LOCUS CM001883 40442896 bp DNA linear CON 26-JUL-2016 DEFINITION Theobroma cacao cultivar Matina 1-6 chromosome 5, whole genome shotgun sequence. ACCESSION CM001883 ALXC01000000 VERSION CM001883.1 DBLINK BioProject: PRJNA51633 BioSample: SAMN02981445 KEYWORDS WGS. SOURCE Theobroma cacao (cacao) ORGANISM Theobroma cacao Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma. REFERENCE 1 (bases 1 to 40442896) AUTHORS Motamayor,J.C., Mockaitis,K., Schmutz,J., Haiminen,N., Iii,D.L., Cornejo,O., Findley,S.D., Zheng,P., Utro,F., Royaert,S., Saski,C., Jenkins,J., Podicheti,R., Zhao,M., Scheffler,B.E., Stack,J.C., Feltus,F.A., Mustiga,G.M., Amores,F., Phillips,W., Marelli,J.P., May,G.D., Shapiro,H., Ma,J., Bustamante,C.D., Schnell,R.J., Main,D., Gilbert,D., Parida,L. and Kuhn,D.N. TITLE The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color JOURNAL Genome Biol. 14 (6), R53 (2013) PUBMED 23731509 REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 40442896) AUTHORS Mockaitis,K., Gilbert,D.G., Schmutz,J.J., Kuhn,D., Saski,C., Scheffler,B., Livingstone,D., Jenkins,J., Main,D., Feltus,A., Podicheti,R., Zheng,P., Ficklin,S., Haiminen,N., Royaert,S., May,G.D., Bretting,P., Shapiro,H., Schnell,R., Parida,L. and Motamayor,J.C. TITLE Direct Submission JOURNAL Submitted (31-AUG-2012) Biology Department, Indiana University, 1000 E. 3rd St., Bloomington, IN 47405, USA COMMENT Submission authors: Mockaitis,K., Gilbert,D.G., Podicheti,R., Indiana University, Biology Department, Bloomington, Indiana, USA Schmutz,J.J., Jenkins,J., HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA Saski,C., Feltus,A., Clemson University, CUGI, Clemson, SC, USA May,G.D., NCGR, Santa Fe, New Mexico, USA Kuhn,D., Livingstone,D., Royaert,S., Schnell,R., USDA-ARS, Miami, FL, USA Scheffler,B., USDA-ARS, Stoneville, Mississippi, USA Bretting,P., USDA-ARS, Beltsville, MD, USA Main,D., Zheng,P., Ficklin,S., Washington State University, Pullman, Washington, USA Haiminen,N., Parida,L. IBM, New York, NY, USA Shapiro,H., Motamayor,J.C., Mars, Incorporated, McLean, VA, USA Genome assembly produced by Jeremy Schmutz (Hudson Alpha) This assembly is primarily composed of Roche 454 Titanium STD reads (USDA-ARS, Stoneville), augmented by 6 recombination paired Titanium libraries (CGB, Indiana U), 3 fosmid packaged Sanger sequenced libraries (USDA-ARS, Miami and CUGI, Clemson), and 3 Sanger sequenced BAC Ends libraries (CUGI, Clemson). Included were an additional 2 paired libraries and linear data from a pre-release version of the Roche 1k system (Roche). We also made extensive use of 100x of 90 bp Illumina based paired sequence (NCGR) and 36x paired 101bp sequence (CGB, Indiana U). The assembly process was as follows: ------------------------------------ 1. Cleaned 454 recombination pairs of duplicate pairs and unpaired read data. 2. Discarded STD Titanium reads < 100 bp. 3. Corrected indel errors in the 454 data by aligning all Illumina reads from a 99x set of V2 illumina data. 4. Assembled the 454 data, FES and BES using our in-house version of the Arachne2 assembler, including a step to remove unanchored repetitive sequence. 5. Applied subsequent filtering steps to remove short (< 150bp) and 454 pair only contigs to minimize chimeric projections. 6. Combined the subsequent assembly with the Cacao physical map (CUGI, Clemson) and the existing Cacao genetic marker maps (CATIE, MCCS, and PNG) (USDA-ARS, Miami) to identify potential misassembled scaffolds. Applied 47 scaffold breaks. 7. Rearranged scaffolds based on the genetic map, additional FES data, and the physical map to build chromosome-scale pseudomolecules with 103 joins (represented by 10k N's in the final scaffolds). 8. Screened the resulting scaffolds for mitochondria, chloroplast, unanchored rDNA, and potential prokaryotic contaminants and removed these scaffolds. 9. Sequestered, small, highly repetitive scaffolds (>=95% composed of 24mers occurring at least 4 times in the larger scaffolds) and small scaffolds, less than 1kb of sequence content. 10. Post-processed the final scaffolds to correct 454 insertion/deletion errors using 36x TrueSeq Illumina data . 11. Validated the resulting pseudomolecules against EST data sets collected as part of this project (CGB, Indiana U) and against an 995 kb Sanger based contig (CUGI, Clemson). 12. Inserted the reference sequence into chromosome 5, replacing the WGS sequence in that region. The resulting pseudomolecules (numbered 1-10) capture 94.6% of the assembled sequence and 98.2% of the sample EST set. Assembled Sequence Coverage per Library: ---------------------------------------- LIB COV. INSERT STDDEV ----- ------ --------------- LINE 15.58x N/A TC3A 0.56x 2368 +/- 707 TC3F 0.51x 2545 +/- 801 TC3D 0.56x 3948 +/- 455 TC3B 0.92x 3949 +/- 452 TC5C 0.92x 6278 +/- 662 TC8E 1.04x 7071 +/- 988 TC8F 0.30x 7176 +/- 1258 TC8A 0.97x 8128 +/- 1005 TCFB 0.01x 35552 +/- 4362 TCFA 0.01x 35706 +/- 4341 TCFC 0.26x 36122 +/- 4467 TCCB 0.03x 93963 +/- 14897 TCCC 0.03x 114008 +/- 24776 TCCA 0.04x 127062 +/- 22613 Total 21.74x Final Assembly Statistics: -------------------------- Main genome scaffold total: 711 Main genome contig total: 20103 Main genome scaffold sequence total: 346.0 MB Main genome contig sequence total: 330.8 MB (-> 4.4% gap) Main genome scaffold N/L50: 5/34.4 MB Main genome contig N/L50: 1080/84.4 KB Number of scaffolds > 50 KB: 74% main genome in scaffolds > 50 KB: 98.4% Minimum Number Number Total Total Scaffold Scaffold of of Scaffold Contig Contig Length Scaffolds Contigs Length Length Coverage -------- --------- ------- ----------- ----------- -------- All 711 20,103 345,993,675 330,821,837 95.61% 1 kb 711 20,103 345,993,675 330,821,837 95.61% 2.5 kb 570 19,917 345,771,487 330,635,450 95.62% 5 kb 438 19,654 345,274,253 330,363,628 95.68% 10 kb 260 19,111 343,977,657 329,666,795 95.84% 25 kb 113 17,955 341,704,814 328,516,629 96.14% 50 kb 74 17,270 340,358,744 327,606,137 96.25% 100 kb 36 15,857 337,733,377 325,806,488 96.47% 250 kb 14 13,751 334,312,246 323,434,351 96.75% 500 kb 13 13,655 333,885,350 323,071,182 96.76% 1 mb 11 13,560 332,179,961 321,406,397 96.76% 2.5 mb 10 13,460 330,456,197 319,759,406 96.76% 5 mb 10 13,460 330,456,197 319,759,406 96.76% EST validation: --------------- We used several 454 EST runs to validate expected coding sequence space. We first removed reads < 300bps and removed all duplicate reads (to avoid over counting 454 duplicates). We then placed these at 90% ID and 85% coverage against the assembly. This is a completeness measure, rather than a comprehensive examination of gene space. Organelle sequence excluded: 1015064 total sequences. 992071 sequences (98.15%) place at >90% identity and >85% coverage 4288 library artifacts (0.42%) 9763 sequences have >=50 percent coverage (0.97%) 8942 sequences are not found (0.88%) Organelle sequence included: 1015064 total sequences. 1000012 sequences (98.90%) place at >90% identity and >85% coverage 3883 library artifacts (0.38%) 8485 sequences have >=50 percent coverage (0.84%) 2684 sequences are not found (0.27%) The ESTs that do not place are primarily composed of rDNA and prokaryotic contamination. ##Genome-Assembly-Data-START## Assembly Method :: Jeremy Schmutz v. 2011-08-01 Assembly Name :: Theobroma_cacao_20110822 Genome Coverage :: 15.58x Sequencing Technology :: 454; Illumina; Sanger ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..40442896 /organism="Theobroma cacao" /mol_type="genomic DNA" /cultivar="Matina 1-6" /db_xref="taxon:3641" /chromosome="5" gene 526..2589 /locus_tag="TCM_021519" /note="dbxref CacaoGD:Thecc1EG021519" mRNA 526..2589 /locus_tag="TCM_021519" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400024444.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016762t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400066018" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.25 coverage" CDS 548..2551 /locus_tag="TCM_021519" /note="paralog of Thecc1EG016762t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY06957.1" /db_xref="Phytozome:PGSC0003DMP400066018" /translation="MVAGRPPDPPIHPLPESSSPPMMSTPTPSFMADKNGGLQASDNH TQPPTSPRFQKKSFLSIAAGSKPPVIPLNRDPAVYKDRPAAVFYEDEICILAKPFSLC LVGKFTRMPKLQEVRSAFKGIGLSGAYEIKWLDYKHVLIHLSNDQDFNRIWTRQQWFI VGQKMRIFKWSPEFEAEKESPVVPVWISFPNLKAHLYEKSALLLIAKTIGKPLFVDEP TAKGSRPSVARVCVEYDCREPPIDQVWIVTQKRETGMVTNGYAQKVEFSQMPDYCEHC CHVGHNETTCLVLGNNSKSSGSMKAQLKGQTKQTLNMSKTQTREKTDGEKEDKAKGIM VEEIRPATKQTDMSKQSIWRVVGKAGKSGAKDASGKEIDVEKRDADSVIPVSNRFQQI MEVESHEQTRNANQGNIDTTYNTLETSNQGEQNNGHPKAPDERQKDATTQHSSGGRKG AELETMSAAPPEGVTRVADFSEQLQIEGSETQNLHENRMHGQKESIVGERMQKLHARS HSDVEKKELTLHTARGLTLHTAHRILSQETPQGDSQKNSKNPSFKPPALAETADVQHG STENGLINSRKNQRMQDLGEADPSPHEAGKQCPDKTPTDRELLTIVPTPGDVDGTKLP AARRQDTFPSYCLQHQRVQGSTFTGAKERVITPHDGTLMQVST" gene 2666..7872 /locus_tag="TCM_021520" /note="dbxref CacaoGD:Thecc1EG021520" mRNA join(2666..3186,3306..4396,5897..6228,7165..7872) /locus_tag="TCM_021520" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400052214.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016762t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.15 coverage" CDS join(2687..3186,3306..4396,5897..6228,7165..7506) /locus_tag="TCM_021520" /note="paralog of Thecc1EG016762t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY06958.1" /translation="MVISASVDSLQDLLPLHGSSDASKQKPSHAQAETISGNANNLSK SMDTASNALNAPTNDKAVEGTRFDDDQTIAENAQLFMVRKPTMRKKAKPALVNLVSAM NIEEADVVLQQVDPTATCTRVETMEAEGSSDNFSQPEPGICMFNKETESIPSNTVIHH SPKQEKRQLELHECIRTLDGKRWSSNRRIHPTESFHPNLSMINCLLWNVRGIAGTAVQ RRLKKLKLMHKVKLLVVLEPMVNTSRINYIKRRLGFDNALSNCSHKIWLFCSNEICCE VVLDQIQCLHVKLSSPWLPHPVYTSFVYAKCTRLERRELWSNLRIISDSMQAPWLVGG DFNSIVSCDERLHGAIPHDGSMEDLSSTLLDCGLLDAGFEGNSFTWTNNRMFQRLDRV VYNHEWAEFFSSTRVQHLNRDGSDHCPLLISCSNTNARGPSTFRFLHAWTKHHDFLPF VEKSWNAPTQASGMTALWYKQQRLKRDLKWWNKHIFGDIFKTLRLAEAEAEQRELIFQ QNPSAINRDLMHKAYAKLNRQLRKRMHWAAWNKITFPCSEGGLDIRNLNDVFDAFTLK LWWRFQTCDSLWTHFLKTKYCLGRIPHYVHPKLHDSLVWKRMIRGREVAIRNIRWKIG KGDLFFWHDCWMGNQPLAELRALLRGLLLCKERHIENLWIEMDALAVIQLIQHSQKGS HDIRYLLESIRKCLSCISYRISHIFREGNQAADYLANEGHSHQNLCVITEAQGELHGM LKLDRLNLPYVRFK" mobile_element 5866..6250 /note="source:CACAO_LINE_E_154_scaffold_6 1924 2308" /mobile_element_type="retrotransposon:LINE/L1" gene 22606..29768 /locus_tag="TCM_021521" /note="dbxref CacaoGD:Thecc1EG021521" mRNA join(22606..25330,25567..26650,27455..29768) /locus_tag="TCM_021521" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g05060.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042329t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400040846" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.14 coverage; weak similarity to DNAse I-like superfamily protein" CDS join(22636..25330,25567..26650,27455..29531) /locus_tag="TCM_021521" /note="paralog of Thecc1EG042329t1; weak similarity to DNAse I-like superfamily protein" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY06959.1" /db_xref="Phytozome:PGSC0003DMP400040846" /db_xref="TAIR:AT1G43760.1" /translation="MAAGRPPDPSNPPPPPVSSFSMLQGTNQNTKDPTNPQPPVNNVG LQATDVQKPPVSPRAQKKSFLSVAAGEKPPIIPTNREPFWYRDRPAVAFFEDEIVALA QPFKHSMVGKFSRMPKLNDIRAAFKGIGLVGVYEIRWLDYKHILIHLSNEQDLNRLWM RQAWFIANQKMRVFKWSPDFQPEKESSLVPVWISFPNLRAHLYEKSALLMIAKSVGRP LFVDEATANGTRPSVARVCVEYDCQQPPLEQIWIVSRDRRTGDITGGFQQKVDFAKLP NYCTHCCHVGHSASTCLVMGHRMEKANNSNAQPYTGRKQAENDGKEVANKPTGDLMSC KGTDRKNIEERPTAADTVPGEDVAAAAEKKTKNPSREVPLKLFPRWQEVGSLDRPAVQ VSIDAETVLENEGKEQYSSLNRFTVLGSVEKEENDEQQQMEKQGQKDDENSALERKNL LSGPPVAVADRQDTGAVKTCGFQAGRRLGSVNPKPKQQQFFSSKQVEDTADVVHITAV EEQTMFAVNKNDNSISVGAEFGADFPVKPQAVDGGMQESSHVNRVHGQRENFFGNRET SPAGKSYAIEPPVVPAAGKSDVRCSLKGERDMKLTTPAEVVPAFAETLMHGDGQQKAE RGSGAKHESGASNKNNFLGALQCIAERQDNVTIGISEMHEGLKMGSNVFKANMQQQIM DDKGEKLVTVGKEANFSNSATSRFSGHGRLDDVDGTGYVLDDSALLNRDQQNIQRGGE NTQKITVRKHKLKKKAKPVLTGLVPVMVIENDEVFLKEAEPAASPQLVSCHSSLAEEN VLVSKIAAEKYERQEGHDENDPNMGLNLTVCGFNKELSFVPSNAGTSSFNSHAAHAKK DDPGGDNLEISSMQPLADSDSVNLEVHPCIARRRKSESSLDHEYVRRRLGFETVISNV SHKIWIFCSEEIGCEILLDHVQYLHVKITVPWLSHPIFSSLVYAKCTRQERLELWNCL RSISWDMQGPWMVGGDFNSILSSAERLHGAHPHSGSMEDFATMLLDCGLLDAGYEGNN FTWTNNHMFQRLDRVVYNHEWADCFNNTRIQHLNRDGSDHCPLLISCNNTVQRGPSNF RFLHAWTHHHDFIPFVEKSWRVPMQATGMLVFWQKQQRLKRDLKWWNKQIFGDIFHNL KLAEAEAAERELHFQQDPSILNRNLMHKAYAKLNRQLSIEESFWQQKSGVKWLVEGER NTKFFHMRMKKKRVRGHIFRIQDQEGNIFEEPSLIKNSAVDFFQNLLKAENCDLSSHL SFADDIVIFTNGCRSSLQKILNFLQEYEQVSGQQVNHQKSCFITANGCALSRRQIISH TTGFHHKTLPVTYLGAPLHKGPKKVFLFDSLISKIRDRISGWENKILSPGGRITLLRS VLSSQPMYLLQVLKPPVTVIEKIERIFNSFLWGDSNDGKKLHWTVWSKITFPVSEGGL DIRNLRDVFEAFSLKLWWRFQTCNSLWTKFLRTKYCLGRIPHFVQPKLHDSQVWKRMI VGRDVALQNIRWRIGKGELFFWHDCWMGDQPLATLCPSFHNDMSHVHKFYNGDVWDIE KLSSCLPTSLVDEILQIPFDRSQEDVAYWALTSNGDFSLWSAWEAIRQRQTPNALFSL IWHRSIPLSISFFLWRVLNNWIPVELRMKDKGIHLASKCVCCRSEESLIHVLWENPVA TQVWFFFAKSFQIYVSKPNHISQIIWAWFFSGDYTRNGHIRILIPLFICWFLWLERND AKHRHMGMYPNRVIWRIMKLLNQLYAGSLLKQWQWKGDTDIATMWGFKFPPKYCTSPQ IIYWIKPFIGEYKLNVDGSSKSNLNAAGGGVLRDHTGKLAFAFSENLGPLPSLQAELH ALLRGLLLCKERNITNLWIEMDALVAVQMVQQSQKGSHDIRYLLESIRLCLRSFSYRI SHIYREGNQAADFLSNKGQTHQSLCVFSEAQGELIGILKLDKLNLPYVRFR" gene 30396..44990 /locus_tag="TCM_021522" /note="dbxref CacaoGD:Thecc1EG021522" mRNA join(30396..32848,33181..33907,34958..36955,37969..39683, 39892..40744,40978..41523,42049..42232,42722..44990) /locus_tag="TCM_021522" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g05060.1" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(30509..32848,33181..33907,34958..36955,37969..39683, 39892..40744,40978..41523,42049..42232,42722..44870) /locus_tag="TCM_021522" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY06960.1" /translation="MPKMQEIRQAFKGIGLTGAYVIRWLDYKHILIHLSNEQDFNRIW TKQQWFIANQKMRVFKWSPDFEAEKESPIVPVWISFPNLKAHLYEKSALLLIAKTVGK PLFIDEATSNASRPSVARVCVEYNCRNAPVEEIWIVIKDRVTGTVTGGYAQKVEFSKM PDYCEHCGHVGHSVSTCLVLGNRSENLRKEKLSNVHSKSLAGKKQTENDDKGLDSKPM DDLKRNKETDRKISEERPMMTGRNTEATAEKRNKILNREVLAKHSLQWQAVGHLGQPK FNGFKGAERHLEDEGTKQFQNVNRFSALGSVQDTENEEQIREGKQILMGESSGKDKQG KDGIDLIFKSEGHQKLNGEVLNASGNHQAAVEKDATFNVTKSAGEEVLPKVPHVHGAR GMAGKSLDILEETVPETRVSRDSTKEFIEESGQELHQERVNKENRGISFDNAENSSNQ LHGAMEKANNAVLHGDIQLQRERGGPQMEKDETEKFTAMTDTELLPPAAGSIAAIGMS AHESVQVGAGAKIKGVSLELSNRAPSFLHRGRHHCSEIAQEDLNMSEGGTSQTRQVIN DEREKIFSAGEATSISAVASSRGPADGRLEVSSATKQVFVDNMLFTGNHGNTQRSFEN VQKITVRKHQLKKKAKPVLASLVPVMDVNNDEVFLKESEPNETHQGAGQEQYWSPAKA SIAAEKNSEEQLNNPQSEPGNCALNMETDSIPSNTILYCNPEQEKSRADHEFFSMQPH AEQESDNLIFHPRNLRRRKSDSSLYSHDNWNSLNASEPAKFTLPWLSHPIFSSFVYAK CTRQERIELWNFLRSVSWDMYGPWMVGGDFNSILSSAERLHGANPHNGSMEDFATMLL DCGLHDAGYEGNNFTWTNNHMFQRLDRVVYNHEWADCFNHTRVQHLNRDGSDHCPLLI SCENTAQRGPSNFRFLHAWTHHHDFTPFVERSWRVPIQATGMLAFWQKQQRLKRDLKW WNKQIFGDIFHNLKLAEAEAATRELHFQQDPSLINRNLMHKAYAKLNLQLDDIVIFTN GCRSSLQKILNFLQEYEQVSGQQVNHQKSCFITTNGCALSRRQIISHTTGFHHKTLPV TYLGAPLHKGQKKVILFDSLISKIRDRISGWENKILSPGGRITLLRSVLSSQPMYLLQ VLKPPVTVIEKIERLFNSFLWGDSCDGKKLHWTAWSKITFPVSEGGLDIRNLRDVFEA FSLKLWWRFQTCNSLWTRFLRTKYCLGRIPHLVQPKLHDSQVWKRMIVGRDVALQNIR WRIGKGELFFWHDCWMGDQPLATLFPSFHNDMSHVHKFYNGDEWDIVKLNSYLPTSLV DEILQIPFDRSQEDVAYWALTSNGEFSFWSAWEIIRQRQTPNALLSFNWHRSIPLSIS FFLWRVLNNWIPVELRMKDKGIHLASKCVCCRSEESLIHVLWENPVAKQVWNFFAKSF QIYVSKPKHISQIIWAWFFSGDYTRNGHIRILIPLFICWFLWLERNDAKHRHMGMYPN RVIWRIMKLLNQLHAGSLLKQWQWKGDTDIATMWGFKYPPKYCQSPQIISWIKPFIGE YKLNVDGSSKSSQNAAGGGVLRDHTGKLAFAFSENLGPLPSLQAELHALLRGLLLCKE RNITNLWIEMDALVAVQMVQQSQKGSHDIRYLLESIRLCLRSFSYRISHIYREGNQAA DFLSNKGQTHQSLCVVSEAQEFPSLPTMHGLPSGRPPDPNQAWPATHQLQQSTATHQQ PSTAPLPQPHSCQQVNGSQIQRPSSPRSQKKSFLSIITGEKPSVVPLTRDPFVFKDRP AAAFFEDEIQTLAKPFKLSLVGKFSRMPKLQDVRAAFKGIGLAGAYEVRWLDYKHVLI HLSNEQDFNRIWTKQNWFIATQKMRVFKWTPEFEPEKESAVVPVWISFPNLKAHLFEK SALLLIAKTVGKPLFVDEATANGSRPSVARVCVEFDCRQPPLDQVWIVVQNRKTGEIT NGYSQRVEFAQMPAYCDHCCHVGHKETDCILLGNKARPPGITKQPNSRLEDGGRRVGS KEDGEFTTEKRKNIENSKKPQNDKILYPEEPPKHQKRGQPANKGSTSGTKIWQGKKVQ SDKASKDENISVSNRFHIISEEEEDEHSRTAQNGKEKKEKNKEKDEGGKTEGIRRGTT EERTTGAEIQTGSGKPEGAEMTATPSALSQILEDNTQGTLHEYGVHGQLQKLVEERDR HAEKESENPRIQNNKIIIKSQQKDNAEQHIRVRLQKEETQKKSTARTAGPSLQAADML RPAKTISGEPTDLPTQAAPTLHGVTQLETDTEDQIISVETLKQATTGHPENTAKQNNK AKAEGGKMITIAPTKLHSERNDAHVRDQEKTHPSENHESAREFVGATVEGEDPAAIGS TPHHNPQVHVERNKDVGGQEPSMHATPEETLLQKACQTNLRQSFLNNIIESSTQVMAL RQDQGHYMTEHRPEVSYSLVDTREGSGEHVPIEEEGKRKEDNDLISPNMESASSKCLF NKEPSDIPSFSGNSQAEVEVHPRERRRRHSDTAIPLRNSLSSATEEAIVLGGNDEDSD GDSISRMEFNCEVLLDHPQCLHVRLTIPWLDFPIFTTFVYAKCTRSERTPLWDSLRGL AADMEGPWLVGGDFNVILKREERLYGADPHEGSMEDFASALLDCGLLDGGFEGNPFTW TNNRMFQRLDRMVFNHQWINKFPITRIQHLNRDGSDHCPLLLSCSNSSEKAPSSFRFL HAWTLHHNFNMSVEEPNLQEVKEVVFGMDPESAAGPDGFSSHFYQQCWDIIAYDLFDA VKDFFQGADIPQGVTSTTGLNALYDQYPSLHYSSGCSMPISHLAFADDVIIFANGSKS ALQRILAFLQEYEELSGQRINPQKSCVVTHTNMASSRRQIILQATGFSHRPLPITYLG APLFKGHKKVILFNDLVAKIEERITGWENKILSPGGRITLLRSTLSSLPIYLLQVLKP PIIVLERINRLFNNFLWGGSASSKRIHWASWGKIALPIAEGGLDIRNLEDVFKAFSMK LWWRFRTTNSLWMQFMRAKYCGGQLPTHVQPKLHDSQTWKRMVTISSITEQNIRWRVG HGKLFFWHDCWMGEEPLVIRNQEFASSMAQVSDFFLNNSWDIEKLKSVLQQEVVEEIA KIPINASSNDRAYWTPTPNGDFSTKSAWQLSRERKVVNPTYNYIWHKSVPLTTSFFLW RLLHDWVPVELKMKSKGFQLASRCRCCKSEESLMHVMWDNPVANQVWSYFAKVFQIHI INPCTINHIISAWFYSGDYSKPGHIRTLVPLFILWFLWVERNDAKHRNLGMYPNRIVW KILKLIHQLFQGKQLQKWQWQGDKQIAQEWGIILKAVAPSPPKLLFWNKPSIGEFKLN VDGSSKYNLQTAAGGGLLRDHTGSMIFGFSENFGSQDSLQAELMALHRGLLLCIDHNV TRLWIEMDAKVAVQMINEGHQGSSRTRYLLASIHRCLSGISFRISHIFREGNQAADHL SNQGYTHQNLQVISQAEGQLRGILRLDKINLAYVRFK" gene complement(44996..54741) /locus_tag="TCM_021523" /note="dbxref CacaoGD:Thecc1EG021523" mRNA complement(join(44996..45080,50574..50814,51098..51190, 54437..54741)) /locus_tag="TCM_021523" /product="Heteroglycan glucosidase 1, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s10310.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016752t2" /inference="similar to AA sequence:ricco:29827.m002602" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.21 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3t1" mobile_element complement(46499..46528) /note="source:INTACT189_F49_scaffold_5-int 13636 13650" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 46529..49281 /note="source:CACAO_M_S_E51987_F15_scaffold_5 1 2753" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(50621..50814,51098..51190,54437..54521)) /locus_tag="TCM_021523" /note="dbxref ricco:29827.m002602; paralog of Thecc1EG016752t2" /codon_start=1 /product="Heteroglycan glucosidase 1, putative" /protein_id="EOY06961.1" /db_xref="TAIR:AT3G23640.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93Y12" /translation="MERKNALILEASLPQLSRPAFTTSFYSYELPLNIPIDGSKQEVW PDSGEQLYEGNLLPNGEWMLVDKCLGLGLINRFHVSDVYKCLIHWGIGTVNLELWSED RPVSKQSPLRAFHEYEVIGTP" gene 54836..59463 /locus_tag="TCM_021524" /note="dbxref CacaoGD:Thecc1EG021524" mRNA join(54836..54998,55126..55183,55280..55509,55709..55825, 55942..56002,56272..56366,56705..56779,56867..56955, 57158..57207,57537..57577,58065..58274,58411..58478, 58574..58634,58724..59463) /locus_tag="TCM_021524" /product="Seven transmembrane MLO family protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400024258" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036726t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400024258" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.44 coverage" CDS join(54882..54998,55126..55183,55280..55509,55709..55825, 55942..56002,56272..56366,56705..56779,56867..56955, 57158..57207,57537..57577,58065..58274,58411..58478, 58574..58634,58724..58927) /locus_tag="TCM_021524" /note="paralog of Thecc1EG036726t1" /codon_start=1 /product="Seven transmembrane MLO family protein" /protein_id="EOY06962.1" /db_xref="Phytozome:PGSC0003DMP400024258" /db_xref="TAIR:AT4G02600.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O49621" /translation="MAGGGTTLEFTPTWVVAVVCAVIVVISLAAERILHYTGKYLKKK HQKPLFEALEKIKEELMLLGFISLLLTVFQDCIGKICIAEHSDSKWLPCKKYDTESKS TSHFQALFLSTRHLLAEASDSDSDPSGAYCAAKGKVPLLSTTPLHHLHIFIFVLAVVH VTFCALTILFGSAKIRQWKHWEDSAAEKEYDPEKVLNTTFTHVQDHDFIKNRFLGIGK NLALLSWMHSFFKQFFGSVTKSDYVTLRLGFINTHCRGNPKFNFHKYMMRALEADFKK VVGISWYLWLFVVAFLLLNIHGWHAYFWIAFIPFMLLLAVGTQLEHVITQLAHEVAEK HVAIEGDLVVQPSDDHFWFHRPQIVLLLIHIILFQNSFELACFFWILVQYHFDSCIMG EVGYVIPRLVIGVIVQFLCSYSTLPLYAIVTQMGSSFKKAIFEEHVQEGIAIWARRAK SKAKGCGKTAKDPKQDSLTLELAKAKEEEKAVEIASESITA" gene complement(58982..66711) /locus_tag="TCM_021525" /note="dbxref CacaoGD:Thecc1EG021525" mRNA complement(join(58982..59645,60267..60341,60447..60657, 61110..61234,61758..61859,61989..62051,62143..62223, 62314..62425,62718..62890,62992..63099,63190..63273, 63371..63433,64252..64863,66595..66711)) /locus_tag="TCM_021525" /product="Guanosine nucleotide diphosphate dissociation inhibitor 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038268001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007377t1" /inference="similar to AA sequence:Phytozome:POPTR_0017s00420.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05663t00001" mRNA complement(join(59284..59645,60267..60341,60447..60657, 61110..61234,61758..61859,61989..62054,62143..62223, 62314..62425,62718..62890,62992..63099,63190..63273, 63371..63433,64252..64791)) /locus_tag="TCM_021525" /product="Guanosine nucleotide diphosphate dissociation inhibitor 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038268001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007377t2" /inference="similar to AA sequence:Phytozome:POPTR_0017s00420.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g827t2; inference alignment:Newbler:10:TSA:cgbaP2_g05663t00001; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc719t2" CDS complement(join(59595..59645,60267..60341,60447..60657, 61110..61234,61758..61859,61989..62051,62143..62223, 62314..62425,62718..62890,62992..63099,63190..63273, 63371..63433,64252..64338)) /locus_tag="TCM_021525" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG007377t1" /codon_start=1 /product="Guanosine nucleotide diphosphate dissociation inhibitor 1 isoform 1" /protein_id="EOY06963.1" /db_xref="Phytozome:POPTR_0017s00420.2" /db_xref="TAIR:AT2G44100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P50395" /translation="MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGEST SLNLIQLWKKFRGNDKPPAHLGSSRDYNVDMIPKFMMANGTLVRVLIHTDVTKYLYFK AVDGSYVFSKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDEKDPKTHEGM DLARVTTRELIAKYGLDDNTVDFIGHALALHRDDCYLDEPALDTVKRMKLYAESLARF QGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDDEGKVSGVTSEGETA RCKKVVCDPSYLPNKVRKIGRVARAIAIMSHPIPNTNDSHSVQIILPQKQLGRRSDMY VFCCSYSHNVAPKGKFIAFVSTEAETDHPETELRPGIDLLGPVDEIFFDIYDRYEPVN EPSLDNCFISTSYDATTHFESTVMDVLNMYTMITGKVLDLSVDLSAASAAEE" CDS complement(join(59595..59645,60267..60341,60447..60657, 61110..61234,61758..61859,61989..62054,62143..62223, 62314..62425,62718..62890,62992..63099,63190..63273, 63371..63433,64252..64338)) /locus_tag="TCM_021525" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG007377t2" /codon_start=1 /product="Guanosine nucleotide diphosphate dissociation inhibitor 1 isoform 2" /protein_id="EOY06964.1" /db_xref="Phytozome:POPTR_0017s00420.2" /db_xref="TAIR:AT2G44100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P50395" /translation="MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGEST SLNLIQLWKKFRGNDKPPAHLGSSRDYNVDMIPKFMMANGTLVRVLIHTDVTKYLYFK AVDGSYVFSKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDEKDPKTHEGM DLARVTTRELIAKYGLDDNTVDFIGHALALHRDDCYLDEPALDTVKRMKLYAESLARF QGGSPYIYPLYGLGELPQQAFARLSAVYGGTYMLNKPECKVEFDDEGKVSGVTSEGET ARCKKVVCDPSYLPNKVRKIGRVARAIAIMSHPIPNTNDSHSVQIILPQKQLGRRSDM YVFCCSYSHNVAPKGKFIAFVSTEAETDHPETELRPGIDLLGPVDEIFFDIYDRYEPV NEPSLDNCFISTSYDATTHFESTVMDVLNMYTMITGKVLDLSVDLSAASAAEE" gene 66860..73491 /locus_tag="TCM_021526" /note="dbxref CacaoGD:Thecc1EG021526" mRNA join(66860..68433,69525..69957,72156..72881,73032..73491) /locus_tag="TCM_021526" /product="Ankyrin repeat family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29093.m000081" /inference="similar to AA sequence:ricco:29093.m000081" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc20t6; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc20t7" mRNA join(66860..67035,67224..68433,69525..69957,72156..73491) /locus_tag="TCM_021526" /product="Ankyrin repeat family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29093.m000081" /inference="similar to AA sequence:ricco:29093.m000081" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc20t7; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc20t7" CDS join(67811..68433,69525..69957,72156..72881,73032..73043) /locus_tag="TCM_021526" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29093.m000081" /codon_start=1 /product="Ankyrin repeat family protein isoform 2" /protein_id="EOY06966.1" /db_xref="TAIR:AT3G59910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HAZ5" /translation="MEKGIEFVVGSDNMHLEEPWFTGMDNEETEMGQPNSEVQGFALE KGEGSSVVFSREAPLVNKESTTSGSCSCSLKKLKSRVAAKESELCPKEKSGHDKKLSR QDRIELGQLFQGAVSSHDWELAESLILLADPQTLNDALCVTLDAIWFLSTQQELYGIT GLIKKIIANGAYDFTRAALRTSFLASCVSACQSRTMSLADTVTVMAQRLHERLQECHG DEVLKAEAGAKVQKFTEWALKCIGSHSRCQGNNDRVNHCSAVEIQLQLTAFKTFLDLA GNQLTGKDFTEAFDAACFPLTLFSSSFDAGWASGITATVIQGLLDMLVEGGADNVNQC FLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYCKIGTMECLVEEGNAMAFL GPLMRAAERGCMQVVQWFVKRGCRDMELCLALTAATSSSQVDVAAYLLPHVPQHVLTA LSIEILKAAGERSGGSLDGVAFLLHSDFLGDAAATYAVADSIARSDDEAVAPELKAFL QEHWSEAAFLDGLKQGQEQYMNLMRILKRGESPICLRDLPAPLRVAITYLPLYRECIE VGGRLLSQRLRGQLVEAVQMLGGGALEEVII" CDS join(67811..68433,69525..69957,72156..72962) /locus_tag="TCM_021526" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29093.m000081" /codon_start=1 /product="Ankyrin repeat family protein isoform 1" /protein_id="EOY06965.1" /db_xref="TAIR:AT3G59910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HAZ5" /translation="MEKGIEFVVGSDNMHLEEPWFTGMDNEETEMGQPNSEVQGFALE KGEGSSVVFSREAPLVNKESTTSGSCSCSLKKLKSRVAAKESELCPKEKSGHDKKLSR QDRIELGQLFQGAVSSHDWELAESLILLADPQTLNDALCVTLDAIWFLSTQQELYGIT GLIKKIIANGAYDFTRAALRTSFLASCVSACQSRTMSLADTVTVMAQRLHERLQECHG DEVLKAEAGAKVQKFTEWALKCIGSHSRCQGNNDRVNHCSAVEIQLQLTAFKTFLDLA GNQLTGKDFTEAFDAACFPLTLFSSSFDAGWASGITATVIQGLLDMLVEGGADNVNQC FLEASRFGSTELVRILLQIAQRNSLDVDVDLALGFASHYCKIGTMECLVEEGNAMAFL GPLMRAAERGCMQVVQWFVKRGCRDMELCLALTAATSSSQVDVAAYLLPHVPQHVLTA LSIEILKAAGERSGGSLDGVAFLLHSDFLGDAAATYAVADSIARSDDEAVAPELKAFL QEHWSEAAFLDGLKQGQEQYMNLMRILKRGESPICLRDLPAPLRVAITYLPLYRECIE VGGRLLSQRLRGQLVEAVQMLGGGALEEVSQGRELLAILEHHLPPFLVRAPSSG" gene complement(73535..76131) /locus_tag="TCM_021527" /note="dbxref CacaoGD:Thecc1EG021527" mRNA complement(join(73535..74802,74935..75016,75404..75921, 76053..76131)) /locus_tag="TCM_021527" /product="Auxin-regulated gene involved in organ size" /inference="alignment:exonerate- protein:2:ricco:29093.m000082" /note="quality class is medium-utrpoor, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc756t26" CDS complement(73971..74351) /locus_tag="TCM_021527" /codon_start=1 /product="Auxin-regulated gene involved in organ size" /protein_id="EOY06967.1" /translation="MRVELSGLNRRFPRGIFNLQDRYSNSIMDMRAGKVPTSVVERKK VEYHRSFSQGGARRLLPVSYFSLESLLLLVCLTASLLILPLILPPLPPPPFLLLLLPI GILAVLMILAFMPSNVRDITYTYM" gene complement(77378..80591) /locus_tag="TCM_021528" /note="dbxref CacaoGD:Thecc1EG021528" mRNA complement(join(77378..77911,78775..79723,80378..80516)) /locus_tag="TCM_021528" /product="Late embryogenesis abundant protein, group 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400024245" /inference="similar to AA sequence:ricco:28266.m000192" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00491t00002; alternateUTRof:Thecc1EG021528t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g12888t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc756t18" mRNA complement(join(77489..77699,77795..77905,78775..79723, 80378..80575)) /locus_tag="TCM_021528" /product="Late embryogenesis abundant protein, group 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400024245" /inference="similar to AA sequence:ricco:28266.m000192" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00559t00001; alternateUTRof:Thecc1EG021528t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g12888t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc756t18" mRNA complement(join(77489..77699,77795..77905,78775..79723, 80034..80118)) /locus_tag="TCM_021528" /product="Late embryogenesis abundant protein, group 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400024245" /inference="similar to AA sequence:ricco:28266.m000192" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00559t00002; alternateUTRof:Thecc1EG021528t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g12888t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc756t18" mRNA complement(join(77586..77905,78775..79723,80378..80591)) /locus_tag="TCM_021528" /product="Late embryogenesis abundant protein, group 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400024245" /inference="similar to AA sequence:ricco:28266.m000192" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g12888t2" CDS complement(78786..79721) /locus_tag="TCM_021528" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28266.m000192" /codon_start=1 /product="Late embryogenesis abundant protein, group 2 isoform 1" /protein_id="EOY06968.1" /db_xref="TAIR:AT2G44060.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O80576" /translation="MASSDKPETTEREVKDDKEDKGGFIEKVKDFIHDIGEKIEEAIG FGKPTADVTGIHIPCINLEKADIVVDVLIKNPNPVPIPLVDINYLIESDGRKLVSGLI PDAGTIHAHGQETVKIPVALIYDDIKSTYDDIKPGSIIPYRIKVDLIVDVPVFGRLTL PLEKTGEIPIPYKPDIDLEKIHFERFSWEETTAVLHLKLENMNDFDLGLNALDYEVWL SDVSIGAAELQKSTKIEKNGISYIDIPISFRPKDFGSALWDMIRGKGTGYSMKGHINV DTPFGAMKLPISKEGGTTRLMKNKEDGGDDDDDDE" CDS complement(78786..79721) /locus_tag="TCM_021528" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28266.m000192" /codon_start=1 /product="Late embryogenesis abundant protein, group 2 isoform 1" /protein_id="EOY06969.1" /db_xref="TAIR:AT2G44060.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O80576" /translation="MASSDKPETTEREVKDDKEDKGGFIEKVKDFIHDIGEKIEEAIG FGKPTADVTGIHIPCINLEKADIVVDVLIKNPNPVPIPLVDINYLIESDGRKLVSGLI PDAGTIHAHGQETVKIPVALIYDDIKSTYDDIKPGSIIPYRIKVDLIVDVPVFGRLTL PLEKTGEIPIPYKPDIDLEKIHFERFSWEETTAVLHLKLENMNDFDLGLNALDYEVWL SDVSIGAAELQKSTKIEKNGISYIDIPISFRPKDFGSALWDMIRGKGTGYSMKGHINV DTPFGAMKLPISKEGGTTRLMKNKEDGGDDDDDDE" CDS complement(78786..79721) /locus_tag="TCM_021528" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:28266.m000192" /codon_start=1 /product="Late embryogenesis abundant protein, group 2 isoform 1" /protein_id="EOY06970.1" /db_xref="TAIR:AT2G44060.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O80576" /translation="MASSDKPETTEREVKDDKEDKGGFIEKVKDFIHDIGEKIEEAIG FGKPTADVTGIHIPCINLEKADIVVDVLIKNPNPVPIPLVDINYLIESDGRKLVSGLI PDAGTIHAHGQETVKIPVALIYDDIKSTYDDIKPGSIIPYRIKVDLIVDVPVFGRLTL PLEKTGEIPIPYKPDIDLEKIHFERFSWEETTAVLHLKLENMNDFDLGLNALDYEVWL SDVSIGAAELQKSTKIEKNGISYIDIPISFRPKDFGSALWDMIRGKGTGYSMKGHINV DTPFGAMKLPISKEGGTTRLMKNKEDGGDDDDDDE" CDS complement(78786..79721) /locus_tag="TCM_021528" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:28266.m000192" /codon_start=1 /product="Late embryogenesis abundant protein, group 2 isoform 1" /protein_id="EOY06971.1" /db_xref="TAIR:AT2G44060.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O80576" /translation="MASSDKPETTEREVKDDKEDKGGFIEKVKDFIHDIGEKIEEAIG FGKPTADVTGIHIPCINLEKADIVVDVLIKNPNPVPIPLVDINYLIESDGRKLVSGLI PDAGTIHAHGQETVKIPVALIYDDIKSTYDDIKPGSIIPYRIKVDLIVDVPVFGRLTL PLEKTGEIPIPYKPDIDLEKIHFERFSWEETTAVLHLKLENMNDFDLGLNALDYEVWL SDVSIGAAELQKSTKIEKNGISYIDIPISFRPKDFGSALWDMIRGKGTGYSMKGHINV DTPFGAMKLPISKEGGTTRLMKNKEDGGDDDDDDE" gene complement(81153..84742) /locus_tag="TCM_021529" /note="dbxref CacaoGD:Thecc1EG021529" mRNA complement(join(81153..81457,81769..81851,81965..83838, 83923..84463)) /locus_tag="TCM_021529" /product="RAP, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:28266.m000193" /inference="similar to AA sequence:Phytozome:POPTR_0017s00380.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g46t2" mRNA complement(join(81220..81457,81769..81851,81965..84668)) /locus_tag="TCM_021529" /product="RAP, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:28266.m000193" /inference="similar to AA sequence:Phytozome:POPTR_0017s00380.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc877t3; alternateUTRof:Thecc1EG021529t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g46t2" CDS complement(join(81386..81457,81769..81851,81965..83777)) /locus_tag="TCM_021529" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="RAP, putative isoform 1" /protein_id="EOY06972.1" /db_xref="Phytozome:POPTR_0017s00380.1" /db_xref="TAIR:AT2G31890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VZE7" /translation="MAFLVKPFPGQTYYKPFTFIPKQVNNLPLLKLRVGIPIPKPKLL FPRRNCTNLGKYTSIGTRNAVNDDQLEEWELEFVGELDPVGWQAPKKRKKQEKSRLLE DTEGMDWCLRARKMALKSIEARGLTHTAEDLITIKKKKKKNKKRFTGKDKINKQSKEI QEDVDFGFKEEIGLEGLDDRIDDSTHGLQEKVSMMAGGLFLEKKEKAMQEFVQKLAQF SGPSDHKKEVNLNKAIIQAHTAEEVLEITAEMIMAVGKGLSPSPLSPLNIATALHRIA KNMEKVSMMNTRRLAFARQREMSMLIGLAMTALPECSPQGISNISWALSKIGGDLLFL SEMDRVAEVALTKVKEFNSQNVANIAGAFATMRHSAPDLFVELAERASDIIHSFQEQE LTQLLWAFASLYEPADTFLQAMDTIFENTDQFKCCLSHEKTNSDEESHVESSRNLKFG EVSDPPVLSLNRDQLGNIAWSYAVLGQVNRIFFPHVWKTLSSFEEQRISEQHRGDIMF ASQVHLVNQCLKLEYPHLQLSLRGDLEEKIVHAGKTKRFNQRTTSSFQKEVAHLLIST GLDWVREYSLDGYTADAVLIDKKVALEIDGPTHFSRNSGTPLGHTMLKRRHIAASGWK VVSLSHQEWEELEGDEEQLEYLRTILKDHLG" CDS complement(join(81386..81457,81769..81851,81965..83777)) /locus_tag="TCM_021529" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="RAP, putative isoform 1" /protein_id="EOY06973.1" /db_xref="Phytozome:POPTR_0017s00380.1" /db_xref="TAIR:AT2G31890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VZE7" /translation="MAFLVKPFPGQTYYKPFTFIPKQVNNLPLLKLRVGIPIPKPKLL FPRRNCTNLGKYTSIGTRNAVNDDQLEEWELEFVGELDPVGWQAPKKRKKQEKSRLLE DTEGMDWCLRARKMALKSIEARGLTHTAEDLITIKKKKKKNKKRFTGKDKINKQSKEI QEDVDFGFKEEIGLEGLDDRIDDSTHGLQEKVSMMAGGLFLEKKEKAMQEFVQKLAQF SGPSDHKKEVNLNKAIIQAHTAEEVLEITAEMIMAVGKGLSPSPLSPLNIATALHRIA KNMEKVSMMNTRRLAFARQREMSMLIGLAMTALPECSPQGISNISWALSKIGGDLLFL SEMDRVAEVALTKVKEFNSQNVANIAGAFATMRHSAPDLFVELAERASDIIHSFQEQE LTQLLWAFASLYEPADTFLQAMDTIFENTDQFKCCLSHEKTNSDEESHVESSRNLKFG EVSDPPVLSLNRDQLGNIAWSYAVLGQVNRIFFPHVWKTLSSFEEQRISEQHRGDIMF ASQVHLVNQCLKLEYPHLQLSLRGDLEEKIVHAGKTKRFNQRTTSSFQKEVAHLLIST GLDWVREYSLDGYTADAVLIDKKVALEIDGPTHFSRNSGTPLGHTMLKRRHIAASGWK VVSLSHQEWEELEGDEEQLEYLRTILKDHLG" mRNA complement(join(81433..81457,81769..84668)) /locus_tag="TCM_021529" /product="RAP, putative isoform 4" /inference="alignment:exonerate- protein:2:ricco:28266.m000193" /inference="similar to AA sequence:Phytozome:POPTR_0017s00380.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc952t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g46t2" mRNA complement(join(81434..81851,81965..84668)) /locus_tag="TCM_021529" /product="RAP, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:28266.m000193" /inference="similar to AA sequence:Phytozome:POPTR_0017s00380.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc952t9; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g46t2" CDS complement(join(81751..81851,81965..83777)) /locus_tag="TCM_021529" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="RAP, putative isoform 3" /protein_id="EOY06974.1" /db_xref="Phytozome:POPTR_0017s00380.1" /db_xref="TAIR:AT2G31890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VZE7" /translation="MAFLVKPFPGQTYYKPFTFIPKQVNNLPLLKLRVGIPIPKPKLL FPRRNCTNLGKYTSIGTRNAVNDDQLEEWELEFVGELDPVGWQAPKKRKKQEKSRLLE DTEGMDWCLRARKMALKSIEARGLTHTAEDLITIKKKKKKNKKRFTGKDKINKQSKEI QEDVDFGFKEEIGLEGLDDRIDDSTHGLQEKVSMMAGGLFLEKKEKAMQEFVQKLAQF SGPSDHKKEVNLNKAIIQAHTAEEVLEITAEMIMAVGKGLSPSPLSPLNIATALHRIA KNMEKVSMMNTRRLAFARQREMSMLIGLAMTALPECSPQGISNISWALSKIGGDLLFL SEMDRVAEVALTKVKEFNSQNVANIAGAFATMRHSAPDLFVELAERASDIIHSFQEQE LTQLLWAFASLYEPADTFLQAMDTIFENTDQFKCCLSHEKTNSDEESHVESSRNLKFG EVSDPPVLSLNRDQLGNIAWSYAVLGQVNRIFFPHVWKTLSSFEEQRISEQHRGDIMF ASQVHLVNQCLKLEYPHLQLSLRGDLEEKIVHAGKTKRFNQRTTSSFQKEVAHLLIST GLDWVREYSLDGYTADAVLIDKKVALEIDGPTHFSRNSGTPLGHTMLKRRHIAASGWK VVSLSHQEVGLCL" mRNA complement(join(<81811..81839,81965..84742)) /locus_tag="TCM_021529" /product="RAP, putative isoform 5" /inference="alignment:exonerate- protein:2:ricco:28266.m000193" /inference="similar to AA sequence:Phytozome:POPTR_0017s00380.1" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is medium, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc953t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g46t2" CDS complement(join(<81811..81839,81965..83777)) /locus_tag="TCM_021529" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="RAP, putative isoform 5" /protein_id="EOY06976.1" /db_xref="Phytozome:POPTR_0017s00380.1" /db_xref="TAIR:AT2G31890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VZE7" /translation="MAFLVKPFPGQTYYKPFTFIPKQVNNLPLLKLRVGIPIPKPKLL FPRRNCTNLGKYTSIGTRNAVNDDQLEEWELEFVGELDPVGWQAPKKRKKQEKSRLLE DTEGMDWCLRARKMALKSIEARGLTHTAEDLITIKKKKKKNKKRFTGKDKINKQSKEI QEDVDFGFKEEIGLEGLDDRIDDSTHGLQEKVSMMAGGLFLEKKEKAMQEFVQKLAQF SGPSDHKKEVNLNKAIIQAHTAEEVLEITAEMIMAVGKGLSPSPLSPLNIATALHRIA KNMEKVSMMNTRRLAFARQREMSMLIGLAMTALPECSPQGISNISWALSKIGGDLLFL SEMDRVAEVALTKVKEFNSQNVANIAGAFATMRHSAPDLFVELAERASDIIHSFQEQE LTQLLWAFASLYEPADTFLQAMDTIFENTDQFKCCLSHEKTNSDEESHVESSRNLKFG EVSDPPVLSLNRDQLGNIAWSYAVLGQVNRIFFPHVWKTLSSFEEQRISEQHRGDIMF ASQVHLVNQCLKLEYPHLQLSLRGDLEEKIVHAGKTKRFNQRTTSSFQKEVAHLLIST GLDWVREYSLDGYTADAVLIDKKVALEIDGPTHFSRNSGHTMLKRRHI" CDS complement(81942..83777) /locus_tag="TCM_021529" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="RAP, putative isoform 4" /protein_id="EOY06975.1" /db_xref="Phytozome:POPTR_0017s00380.1" /db_xref="TAIR:AT2G31890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VZE7" /translation="MAFLVKPFPGQTYYKPFTFIPKQVNNLPLLKLRVGIPIPKPKLL FPRRNCTNLGKYTSIGTRNAVNDDQLEEWELEFVGELDPVGWQAPKKRKKQEKSRLLE DTEGMDWCLRARKMALKSIEARGLTHTAEDLITIKKKKKKNKKRFTGKDKINKQSKEI QEDVDFGFKEEIGLEGLDDRIDDSTHGLQEKVSMMAGGLFLEKKEKAMQEFVQKLAQF SGPSDHKKEVNLNKAIIQAHTAEEVLEITAEMIMAVGKGLSPSPLSPLNIATALHRIA KNMEKVSMMNTRRLAFARQREMSMLIGLAMTALPECSPQGISNISWALSKIGGDLLFL SEMDRVAEVALTKVKEFNSQNVANIAGAFATMRHSAPDLFVELAERASDIIHSFQEQE LTQLLWAFASLYEPADTFLQAMDTIFENTDQFKCCLSHEKTNSDEESHVESSRNLKFG EVSDPPVLSLNRDQLGNIAWSYAVLGQVNRIFFPHVWKTLSSFEEQRISEQHRGDIMF ASQVHLVNQCLKLEYPHLQLSLRGDLEEKIVHAGKTKRFNQRTTSSFQKEVAHLLIST GLDWVREYSLDGYTADAVLIDKKVALEIDGPTHFSRNSGAHFLLM" gene complement(86170..89901) /locus_tag="TCM_021530" /note="dbxref CacaoGD:Thecc1EG021530" mRNA complement(join(86170..87014,87173..87304,87466..87564, 87785..87896,88018..88121,88217..88384,88480..88755, 88933..89223,89401..89901)) /locus_tag="TCM_021530" /product="Glucose-1-phosphate adenylyltransferase" /inference="alignment:exonerate- protein:2:ricco:28266.m000194" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002492t1" /inference="similar to AA sequence:Phytozome:POPTR_0017s00370.1" /note="quality class is strong, express is medium, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1993t2" CDS complement(join(86898..87014,87173..87304,87466..87564, 87785..87896,88018..88121,88217..88384,88480..88755, 88933..89223,89401..89601)) /locus_tag="TCM_021530" /note="paralog of Thecc1EG002492t1" /codon_start=1 /product="Glucose-1-phosphate adenylyltransferase" /protein_id="EOY06977.1" /db_xref="Phytozome:POPTR_0017s00370.1" /db_xref="TAIR:AT1G05610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T528" /translation="MSRTSVTMKLQLSSSTPVNIQTKLPILGLGRYHQRYSPKLPSNF QSTSISNSHQTPSPILLHPPVNQSVAAIVFGEGSDSRLYPLTKRRSEGAIPIAANYRL IDAVVSNCINSNINKIYALTQFNSTSLNSHLSRAYSGAGLGKEGFVEVIAAYQSPEDQ DWFQGTADAIRRCLWVLEEYPVAEFLVLPGHHLYKMDYQKLIEFHRNRKSDVTIVASN DITVRDQDSGFGLLKINTENQVIQYTLKSDREHINYSVAETLTRFNDTSYNNVPSMGI YLINRATMVNLLNKHFRKANDFESEVIRGAISLGMKVQAYLFEGYWEDMRSIEAFYQA NMECIKKSDMGYNFYDRDSPVYTMPRYLPPTIISDAVITDSVIGDGCILNRCKIKGTV VGMRTKVGDGAIVEDSVIMGSDIYQIEDGHESGLAVEEKGIGIPIGIGENTQIRKAIV DKNARIGKNVKIINRDNVEEGGREADGYIISGGIMVILRSAEIPDDSIL" gene complement(90626..94498) /locus_tag="TCM_021531" /note="dbxref CacaoGD:Thecc1EG021531" mRNA complement(join(90626..90923,91998..92057,92438..92484, 93168..93246,93381..93476,93945..94040,94160..94263, 94339..94498)) /locus_tag="TCM_021531" /product="6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038261001" /inference="similar to AA sequence:ricco:28623.m000404" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaL_g07296t00001; inference alignment:Newbler:10:TSA:cgbaL_g07296t00001" CDS complement(join(90885..90923,91998..92057,92438..92484, 93168..93246,93381..93476,93945..94040,94160..94263, 94339..94477)) /locus_tag="TCM_021531" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28623.m000404" /codon_start=1 /product="6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase isoform 1" /protein_id="EOY06978.1" /db_xref="TAIR:AT2G44050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80575" /translation="MASPGCCWMQERLLSGVFPIPRARGLPTPKSTALSFSSSLLQLQ PQGFAPDRKQRSSFVQAPAVRRLVGSLTKTQGLRFAVVIARFNEIVTKQLLEGALDTF SKYSVNEEDIDVVWVPGCFEIGIVAEMLGKSRKYHAILCIGAVIRGDTSHYDAVANSV ASGVLSAGLNSGVPCIFGVLTCDDMEQALNRAGGKAGNKGAECALTAIEMASLFEHQL K" mRNA complement(join(90895..90923,91998..92057,92438..92484, 93384..93476,93945..94040,94160..94267,94349..94479)) /locus_tag="TCM_021531" /product="6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038261001" /inference="similar to AA sequence:ricco:28623.m000404" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc868t7; inference alignment:Newbler:10:TSA:cgbaL_g07296t00001" mRNA complement(join(90895..90923,91998..92057,92438..92484, 93142..93246,93384..93476,93945..94040,94160..94271, 94332..94479)) /locus_tag="TCM_021531" /product="6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038261001" /inference="similar to AA sequence:ricco:28623.m000404" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc886t20; inference alignment:Newbler:10:TSA:cgbaL_g07296t00001" mRNA complement(join(92444..92484,93161..93246,93384..93476, 93945..94040,94160..94271,94332..94479)) /locus_tag="TCM_021531" /product="6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038261001" /inference="similar to AA sequence:ricco:28623.m000404" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc886t14; inference alignment:Newbler:10:TSA:cgbaL_g07296t00001" CDS complement(join(92451..92484,93161..93246,93384..93476, 93945..94040,94160..94271,94332..94477)) /locus_tag="TCM_021531" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:28623.m000404" /codon_start=1 /product="6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase isoform 4" /protein_id="EOY06981.1" /db_xref="TAIR:AT2G44050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80575" /translation="MASPGCCWMQERLLSGVFPIPRARGLPTPKSTALSFSSSLLQLQ PQGHLISGFAPDRKQRSSFVQAPAVRRLVGSLTKTQGLRFAVVIARFNEIVTKQLLEG ALDTFSKYSVNEEDIDVVWVPGCFEIGIVAEMLGKSRKYHAILCIGAIRGDTSHYDAV ANSVASGVLSAGLNSGQLCSLHIWCFDM" CDS complement(join(92458..92484,93384..93476,93945..94040, 94160..94267,94349..94477)) /locus_tag="TCM_021531" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:28623.m000404" /codon_start=1 /product="6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase isoform 3" /protein_id="EOY06980.1" /db_xref="TAIR:AT2G44050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80575" /translation="MASPGCCWMQERLLSGVFPIPRARGLPTPKSTALSFSSSLLQLS GFAPDRKQRSSFVQAPAVRRLVGSLTKTQGLRFAVVIARFNEIVTKQLLEGALDTFSK YSVNEEDIDVVWVPGCFEIGIVAEMLGKSRKYHAILCIGAVFLAYLVF" CDS complement(join(92458..92484,93142..93246,93384..93476, 93945..94040,94160..94271,94332..94477)) /locus_tag="TCM_021531" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28623.m000404" /codon_start=1 /product="6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase isoform 2" /protein_id="EOY06979.1" /db_xref="TAIR:AT2G44050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80575" /translation="MASPGCCWMQERLLSGVFPIPRARGLPTPKSTALSFSSSLLQLQ PQGHLISGFAPDRKQRSSFVQAPAVRRLVGSLTKTQGLRFAVVIARFNEIVTKQLLEG ALDTFSKYSVNEEDIDVVWVPGCFEIGIVAEMLGKSRKYHAILCIGAIRGDTSHYDAV ANSVASGVLSAGLNSGQLSCLMYFVFLAYLVF" gene 95006..99854 /locus_tag="TCM_021532" /note="dbxref CacaoGD:Thecc1EG021532" mRNA join(95006..95486,95567..95740,95902..96005,96178..96388, 96532..96636,96806..96924,97336..97479,98004..98148, 98360..98560,98744..98806,99229..99854) /locus_tag="TCM_021532" /product="Poly (ADP-ribose) glycohydrolase (PARG), putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038259001" /inference="similar to AA sequence:Phytozome:GSVIVT01038259001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g154t2" mRNA join(95006..95486,95567..95740,95902..96005,96178..96388, 96532..96636,96806..96924,97336..97479,98052..98148, 98360..98560,98744..98806,99229..99854) /locus_tag="TCM_021532" /product="Poly (ADP-ribose) glycohydrolase (PARG), putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038259001" /inference="similar to AA sequence:Phytozome:GSVIVT01038259001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:PASA:2:TSA:puevd3b020820t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g154t2" CDS join(95238..95486,95567..95740,95902..96005,96178..96388, 96532..96636,96806..96924,97336..97479,98004..98148, 98360..98560,98744..98806,99229..99390) /locus_tag="TCM_021532" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Poly (ADP-ribose) glycohydrolase (PARG), putative isoform 1" /protein_id="EOY06982.1" /db_xref="Phytozome:GSVIVT01038259001" /db_xref="TAIR:AT2G31870.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SKB3" /translation="MEDRAELDSILPYLPILIGSSRCLLWPSKVVEALEAMSKGPDHS QVNSGQVLSIAISDMRASLSLRDPLAPFSPQGYSLFFDELLTAADSTKWFAEVIPPLA NLLLRLPSLLDFHYQNMQAYGYGLRILGPQQPGMVLLSQELIGALLACSLFCLFPVSN RGVKHLPTINFDQLFASLYESYSEKQENKVRCIVHYFQRICSQMPTGFVSFQRKLLSL EYPPSQSSASYPNADFWTKSTLPLCPFQVYSSGLIEDHPTGALEVDFANKYLGGGALH RGCVQEEIRFMISPELIAGMLFLPSMADNEAIEIVGAERFSDYTGYASSFRFTGDYVD KRSVDFLGRRKTRIVAIDALCSPRMNQYKLKYLLRETNKAFCGFLDQSKYSQYKRLFQ DNGLSAGQLHQDNKHDGDISRNEVLLNEAPSTSNETNEGGSRMEVVRKSDEKGGQFMD PKNCIGIATGNWGCGAFGGDPELKTIIQWLAASQALRPFISYYTFGLDALQSLAQVSQ WILLHKWNVGDLWNMLIEYSSQKSRGETNLGFFAWLLPSLPHCEAAEPAN" CDS join(95238..95486,95567..95740,95902..96005,96178..96388, 96532..96636,96806..96924,97336..97479,98052..98148, 98360..98560,98744..98806,99229..99390) /locus_tag="TCM_021532" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Poly (ADP-ribose) glycohydrolase (PARG), putative isoform 2" /protein_id="EOY06983.1" /db_xref="Phytozome:GSVIVT01038259001" /db_xref="TAIR:AT2G31870.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SKB3" /translation="MEDRAELDSILPYLPILIGSSRCLLWPSKVVEALEAMSKGPDHS QVNSGQVLSIAISDMRASLSLRDPLAPFSPQGYSLFFDELLTAADSTKWFAEVIPPLA NLLLRLPSLLDFHYQNMQAYGYGLRILGPQQPGMVLLSQELIGALLACSLFCLFPVSN RGVKHLPTINFDQLFASLYESYSEKQENKVRCIVHYFQRICSQMPTGFVSFQRKLLSL EYPPSQSSASYPNADFWTKSTLPLCPFQVYSSGLIEDHPTGALEVDFANKYLGGGALH RGCVQEEIRFMISPELIAGMLFLPSMADNEAIEIVGAERFSDYTGYASSFRFTGDYVD KRSVDFLGRRKTRIVAIDALCSPRMNQYKLKYLLRQYKRLFQDNGLSAGQLHQDNKHD GDISRNEVLLNEAPSTSNETNEGGSRMEVVRKSDEKGGQFMDPKNCIGIATGNWGCGA FGGDPELKTIIQWLAASQALRPFISYYTFGLDALQSLAQVSQWILLHKWNVGDLWNML IEYSSQKSRGETNLGFFAWLLPSLPHCEAAEPAN" mobile_element complement(101862..104379) /note="source:INTACT127_F12_scaffold_6-int 8660 11191" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 104856..105892 /locus_tag="TCM_021535" /note="dbxref CacaoGD:Thecc1EG021535" mRNA join(104856..104954,105029..105892) /locus_tag="TCM_021535" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.75 coverage" CDS join(104921..104954,105029..105195) /locus_tag="TCM_021535" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY06984.1" /translation="MDLPIVDEKQQAKSSAYVREFMEKAFVRSGLWSLSGFKNAGNLT SHRSPQATSIGGLPCLENQARH" gene complement(106575..107299) /locus_tag="TCM_021536" /note="dbxref CacaoGD:Thecc1EG021536" mRNA complement(join(106575..106700,106883..107299)) /locus_tag="TCM_021536" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma06g17040.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01814t00002" CDS complement(106885..107223) /locus_tag="TCM_021536" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY06985.1" /translation="MEGLIPLVYRTLKKNKTRRQYQCLSSGAAQTYNIADFDVDGQSP VCMKPSTAEKSCGLKTQRNGHRRHVSMGDFSMRYSSADGMKTGASPTPPAPKLKRFRS HRMFSCVTGA" gene complement(108406..111201) /locus_tag="TCM_021537" /note="dbxref CacaoGD:Thecc1EG021537" mRNA complement(join(108406..110202,110530..111201)) /locus_tag="TCM_021537" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:28266.m000200" /note="quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1541t1" CDS complement(join(109091..110202,110530..111199)) /locus_tag="TCM_021537" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY06986.1" /db_xref="TAIR:AT2G43990.1" /translation="MIDLSLTSHSFLFLLISSVSFFLATLLVPSCTKVYVLVGMIRSS SSSKPHNHKNWSESEVPKTKAMKKRKEKQGSRRAFQHVKNTATSSSSSSSLSSSSSGS IEAPRGCLRFLLSHSSSSASTTNIKTPFNRNCATTAHLISKTPKSAPISRPPHSKPFP FINQNSSSKLGRVKKSQSSKKPTSETPPFLDSNNAAPETESLSVSQDLLKLPEEELQF TPVAVRLVNRSSVSKLSSPAEASMLWLLSPCHEDDDDDKENSAPLHGLLEPKTLPYPS SPLSDLGLSLDLCSFSNNTSDTSNSSCNKCQRSTNNMLISTQLPHFQVCLDSLSDYAL VSSSPNDTPYSRAVPLKEEAKYCYNIEGGCSPFSTDTLGSENVMQTPTSDSSLERHAG LSCSSAKDHKRYHFHSDQLLSVAGDLGTESLSPKRHVSIWDTTSSSFQFDRLTTPSNS MELPPFQKILGDQSLWTSNSTFENVSQSQMRISWREGLVSRIFEMDELDSCRCLSDEE EELNVNSGDPLKPCQSLEINVDVGNVPTLKNGFGSTEFVHGESREKLQSPVQGSCAES ISTDGGGLARSEDSDWSLCYKNNLFEV" gene 111356..115169 /locus_tag="TCM_021538" /note="dbxref CacaoGD:Thecc1EG021538" mRNA join(111356..111520,111720..111835,111935..111994, 112697..112882,112975..113079,113442..113538, 113723..113830,113914..114049,114681..115169) /locus_tag="TCM_021538" /product="Uridine-ribohydrolase 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s00470.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022528t1" /inference="similar to AA sequence:Phytozome:POPTR_0007s00470.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11704t00001" CDS join(111469..111520,111720..111835,111935..111994, 112697..112882,112975..113079,113442..113538, 113723..113830,113914..114049,114681..114789) /locus_tag="TCM_021538" /note="paralog of Thecc1EG022528t1" /codon_start=1 /product="Uridine-ribohydrolase 2" /protein_id="EOY06987.1" /db_xref="Phytozome:POPTR_0007s00470.1" /db_xref="TAIR:AT1G05620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LAC4" /translation="MAAAEAKKIIIDTDPGIDDAMAIFLALRSPEVEVIGLTTIYGNV YTTLATRNALHLLEVAGRTDIPVAEGSHVTITKGTKLRIADFVHGADGLGNQNFPPPK GKPIDMSAAAFLVEQANLYPGKVTVVALGPLTNIALAIQLDPSFTKNVGQIVLLGGAF AVNGNVNPAAEANIFGDPDAADIVFTSGADVLAVGINVTHQVVLTDADRDKLARSIGK FAQYLCKILEVYFSYHHDVYSTKGVYLHDPTAMVAAINPSLLTYMEGAVRVQTNGITR GLTILYNKQKRFAEITEWSDQPTVKVAVTVDAPAVVKLVMERLMDS" mobile_element complement(115674..115742) /note="source:CACAO_M_S_E5162_F13_scaffold_1 5327 5395" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(115689..115778) /note="source:scaffold_4_CACTA_0490 3096 3186" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(115752..115977) /note="source:scaffold_2_CACTA_0256 17371 17569" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(116072..116651) /note="source:CACAO_M_S_E8013_F15_scaffold_2 2125 2704" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 116827..122355 /locus_tag="TCM_021539" /note="dbxref CacaoGD:Thecc1EG021539" mRNA join(116827..116922,117208..117276,117486..117688, 117959..118112,118675..118788,120042..120104, 120520..120665,120767..120905,121569..122355) /locus_tag="TCM_021539" /product="Inositol 1,3,4-trisphosphate 5/6-kinase 4" /inference="alignment:exonerate- protein:2:TAIR:AT2G43980.1" /inference="similar to AA sequence:ricco:30042.m000491" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09852t00001" CDS join(116872..116922,117208..117276,117486..117688, 117959..118112,118675..118788,120042..120104, 120520..120665,120767..120905,121569..121736) /locus_tag="TCM_021539" /note="dbxref ricco:30042.m000491" /codon_start=1 /product="Inositol 1,3,4-trisphosphate 5/6-kinase 4" /protein_id="EOY06988.1" /db_xref="TAIR:AT2G43980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T2M6" /translation="MDKLEELPLTICRLNKKAISNDVVTVGYIMKPSREEDFAKRGAF PMCATPNGLIFLPLTFKIPISTQLEEVDVILHKATDEIVSIELNSFSEPSYRIAFTTG MQELQRNIENHNHCFEVDPLSSIYPVLDRLTIQQILLGLEDLNSGGRCKVRAPHFFKV DRFDEPDLVQRLRDAKLSVPSIVKPQVACGVADAHSMAIVFRVEDFKDLSVPLPAVVQ EYVDHSSTLFKVYVLGERVFHAVKKSTPNADILMKSSEINGLRPLLFDSLKSLPTGTG NQHSGGQDLCLDLALVKEAAEWLSRRLGLTIFGFDIVIQEGSGDHVIVDVNYLPSFKE VPDGTAIPAFWDAIKKKVDSKAMKQASVAASHGM" gene 122396..126925 /locus_tag="TCM_021541" /note="dbxref CacaoGD:Thecc1EG021541" mRNA join(122396..123301,123606..123687,124008..124102, 124216..124287,124504..124583,124700..124799, 124963..125010,125092..125160,125635..125784, 126238..126829) /locus_tag="TCM_021541" /product="RNA-binding protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30042.m000490" /inference="similar to AA sequence:ricco:30042.m000490" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaL_g07100t00001" mRNA join(122552..123301,123606..123687,124008..124102, 124216..124287,124504..124583,124700..124799, 124963..125013,125092..125160,125635..125784, 126238..126925) /locus_tag="TCM_021541" /product="RNA-binding protein, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:30042.m000490" /inference="similar to AA sequence:ricco:30042.m000490" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g187t1; inference alignment:Newbler:10:TSA:cgbaL_g07100t00001" CDS join(122762..123301,123606..123687,124008..124102, 124216..124287,124504..124583,124700..124799, 124963..125013,125092..125160,125635..125784, 126238..126504) /locus_tag="TCM_021541" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30042.m000490" /codon_start=1 /product="RNA-binding protein, putative isoform 3" /protein_id="EOY06991.1" /db_xref="TAIR:AT2G43970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T2M5" /translation="MAQPETLDSPLSASSSSDPQLSRNLSSSRLNAQAPEFVPTRSTP QQQQQQQQQQQQQQQQQQQQQQSHRMMIPPPPPPAMLHVYPPPPPPPAAFHLPVHSPV PMPPHMVPVPHHMPMRNHHHHHHHPPFQNHPHHHREQEVEAVVKKDHHKEQHKEHKDH GASCSKNGLSEEATLKILNQVEYYFSDLNLATTDHLMRFINKDPEGYVPISVVASFKK IKALITTHAQLATVLRNSLKLVVSEDGKKVRRQHPLTESDMEELQSRIIVAENLPEDH CHQNLMKIFSSVGSVKTIRTCQPQPSGGGVSSASRTAKSDGMHFSNKLHAFVEYESVE LAEKAVVAELNDEGNWRSGLRVRLMLRRVSKPTHTRGKKGHDGEGHYEEDDASTSEQQ SNDKQQEDPSQLSDIHSHEYPGEEHSNEKEGGQKKGRNRGRGKGRGRAQYHNNQHNSR GNHVGTPPSATSNLVSNEQATVAKQPPGPRMPDGTRGFAMGRGKPVAVNTA" CDS join(122762..123301,123606..123687,124008..124102, 124216..124287,124504..124583,124700..124799, 124963..125010,125092..125160,125635..125784, 126238..126504) /locus_tag="TCM_021541" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30042.m000490" /codon_start=1 /product="RNA-binding protein, putative isoform 1" /protein_id="EOY06989.1" /db_xref="TAIR:AT2G43970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T2M5" /translation="MAQPETLDSPLSASSSSDPQLSRNLSSSRLNAQAPEFVPTRSTP QQQQQQQQQQQQQQQQQQQQQQSHRMMIPPPPPPAMLHVYPPPPPPPAAFHLPVHSPV PMPPHMVPVPHHMPMRNHHHHHHHPPFQNHPHHHREQEVEAVVKKDHHKEQHKEHKDH GASCSKNGLSEEATLKILNQVEYYFSDLNLATTDHLMRFINKDPEGYVPISVVASFKK IKALITTHAQLATVLRNSLKLVVSEDGKKVRRQHPLTESDMEELQSRIIVAENLPEDH CHQNLMKIFSSVGSVKTIRTCQPQPSGGGVSSASRTAKSDGMHFSNKLHAFVEYESVE LAEKAVAELNDEGNWRSGLRVRLMLRRVSKPTHTRGKKGHDGEGHYEEDDASTSEQQS NDKQQEDPSQLSDIHSHEYPGEEHSNEKEGGQKKGRNRGRGKGRGRAQYHNNQHNSRG NHVGTPPSATSNLVSNEQATVAKQPPGPRMPDGTRGFAMGRGKPVAVNTA" mRNA join(122951..123301,123606..123687,124008..124102, 124216..124287,124504..124583,124700..124799, 124963..125010,125092..125160,125635..125784, 126238..126546) /locus_tag="TCM_021541" /product="RNA-binding protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30042.m000490" /inference="similar to AA sequence:ricco:30042.m000490" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc674t10; inference alignment:Newbler:10:TSA:cgbaL_g07100t00001" CDS join(122969..123301,123606..123687,124008..124102, 124216..124287,124504..124583,124700..124799, 124963..125010,125092..125160,125635..125784, 126238..126504) /locus_tag="TCM_021541" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30042.m000490" /codon_start=1 /product="RNA-binding protein, putative isoform 2" /protein_id="EOY06990.1" /db_xref="TAIR:AT2G43970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T2M5" /translation="MMIPPPPPPAMLHVYPPPPPPPAAFHLPVHSPVPMPPHMVPVPH HMPMRNHHHHHHHPPFQNHPHHHREQEVEAVVKKDHHKEQHKEHKDHGASCSKNGLSE EATLKILNQVEYYFSDLNLATTDHLMRFINKDPEGYVPISVVASFKKIKALITTHAQL ATVLRNSLKLVVSEDGKKVRRQHPLTESDMEELQSRIIVAENLPEDHCHQNLMKIFSS VGSVKTIRTCQPQPSGGGVSSASRTAKSDGMHFSNKLHAFVEYESVELAEKAVAELND EGNWRSGLRVRLMLRRVSKPTHTRGKKGHDGEGHYEEDDASTSEQQSNDKQQEDPSQL SDIHSHEYPGEEHSNEKEGGQKKGRNRGRGKGRGRAQYHNNQHNSRGNHVGTPPSATS NLVSNEQATVAKQPPGPRMPDGTRGFAMGRGKPVAVNTA" gene 127063..130866 /locus_tag="TCM_021542" /note="dbxref CacaoGD:Thecc1EG021542" mRNA join(127063..127520,127860..127949,128371..128541, 128809..128903,129347..129467,129839..129871, 130211..130866) /locus_tag="TCM_021542" /product="Chloroplast outer envelope protein 37 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s00440.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015469t1" /inference="similar to AA sequence:Phytozome:POPTR_0007s00440.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Newbler:10:TSA:cgbaL_g13202t00001" mRNA join(127063..127520,127860..127949,128371..128541, 128809..128903,129347..129467,130211..130866) /locus_tag="TCM_021542" /product="Chloroplast outer envelope protein 37 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s00440.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015469t1" /inference="similar to AA sequence:Phytozome:POPTR_0007s00440.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:PASA:2:TSA:puevd3b020829t1a2; inference alignment:Newbler:10:TSA:cgbaB_g10905t00001" CDS join(127137..127520,127860..127949,128371..128541, 128809..128903,129347..129467,129839..129871, 130211..130342) /locus_tag="TCM_021542" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG015469t1" /codon_start=1 /product="Chloroplast outer envelope protein 37 isoform 1" /protein_id="EOY06992.1" /db_xref="Phytozome:POPTR_0007s00440.1" /db_xref="TAIR:AT2G43950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80565" /translation="MVEPSPPNPVYMAPAVTPPGAGDGDPLFLPPSPPSPSPKRPPWV RVTSEFDSGSLIFFHKVSCKVFDNLAKLKLSFNNNTKREISHPHLALTSKHLSVHYNV EDQEALIKTSFHVAPRLHFKTAHFLKAQQSEVTMVANLADPGYALELSSPVPYVGLPR ATFKFPIGEVSLEGREDEEVKRTFAVNGIIKGQVLNGVCAANYKDEELKLRYTYKDEA LSFIPSISLPSNALSFSFKRRFSPSDKLSYWYNFDSNYWSLVYKHKYGKDFKFKAGYD SEVRAGWASLWIGYGTLLPSQQVGEEGGRAKTAPMKLKVQFTLQVPQDDIKSSALMFR VKKRWDI" CDS join(127137..127520,127860..127949,128371..128541, 128809..128903,129347..129467,130211..130342) /locus_tag="TCM_021542" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG015469t1" /codon_start=1 /product="Chloroplast outer envelope protein 37 isoform 2" /protein_id="EOY06993.1" /db_xref="Phytozome:POPTR_0007s00440.1" /db_xref="TAIR:AT2G43950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80565" /translation="MVEPSPPNPVYMAPAVTPPGAGDGDPLFLPPSPPSPSPKRPPWV RVTSEFDSGSLIFFHKVSCKVFDNLAKLKLSFNNNTKREISHPHLALTSKHLSVHYNV EDQEALIKTSFHVAPRLHFKTAHFLKAQQSEVTMVANLADPGYALELSSPVPYVGLPR ATFKFPIGEVSLEGREDEEVKRTFAVNGIIKGQVLNGVCAANYKDEELKLRYTYKDEA LSFIPSISLPSNALSFSFKRRFSPSDKLSYWYNFDSNYWSLVYKHKYGKDFKFKAGYD SEVRAGWASLWVGEEGGRAKTAPMKLKVQFTLQVPQDDIKSSALMFRVKKRWDI" gene 130836..133276 /locus_tag="TCM_021543" /note="dbxref CacaoGD:Thecc1EG021543" mRNA join(130836..131169,131458..131588,131770..131856, 131993..132093,132169..132268,132523..132569, 132733..132811,132995..133276) /locus_tag="TCM_021543" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30042.m000483" /inference="similar to AA sequence:Phytozome:GSVIVT01038246001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00470t00001" mRNA join(130950..131169,131458..131588,131770..131856, 131993..132093,132169..132268,132733..132811, 132995..133220) /locus_tag="TCM_021543" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30042.m000483" /inference="similar to AA sequence:Phytozome:POPTR_0017s03980.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00617t00004; inference alignment:Newbler:10:TSA:cgbaL_g00470t00001" CDS join(130989..131169,131458..131588,131770..131856, 131993..132093,132169..132268,132523..132569, 132733..132811,132995..133048) /locus_tag="TCM_021543" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /protein_id="EOY06994.1" /db_xref="Phytozome:GSVIVT01038246001" /db_xref="TAIR:AT2G43940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93V78" /translation="MPPSLFSFQFRIRNLPLRVPSTTLGTIRVMNNNRHRTADSRVES NPRVHKLQQLVNTNASGGWEESWKQGVTPWDLGRPTPVISHLHHTGSLPMGRVLVPGC GTGYDVVEMACLGRYVVGLDISEEAIKKAKQMSSTLPNADYFTFIKADFFTWHPTDLF DLIFDYTFFCAIEPDMRSAWAQQIQNFLKPDGELITLMFPMDDHAGGPPYKVSIADYK EVLHPMGFEAISIVDNKWAIEVRKGREKLGRWKRALGQSSL" CDS join(130989..131169,131458..131588,131770..131856, 131993..132093,132169..132268,132733..132738) /locus_tag="TCM_021543" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 2" /protein_id="EOY06995.1" /db_xref="Phytozome:POPTR_0017s03980.1" /db_xref="TAIR:AT2G43940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WP12" /translation="MPPSLFSFQFRIRNLPLRVPSTTLGTIRVMNNNRHRTADSRVES NPRVHKLQQLVNTNASGGWEESWKQGVTPWDLGRPTPVISHLHHTGSLPMGRVLVPGC GTGYDVVEMACLGRYVVGLDISEEAIKKAKQMSSTLPNADYFTFIKADFFTWHPTDLF DLIFDYTFFCAIEPDMRSAWAQQIQNFLKPDGELITLMFPL" gene 132169..141231 /locus_tag="TCM_021544" /note="dbxref CacaoGD:Thecc1EG021544" mRNA join(132169..132569,132733..132811,132995..134667, 134856..135108,135415..136222,136331..136455, 136706..136790,137071..137236,137339..>137367) /locus_tag="TCM_021544" /product="Endonuclease/exonuclease/phosphatase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s03970.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024214t1" /inference="similar to AA sequence:frave:gene08964" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.65 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1389t12; alternateUTRof:Thecc1EG021544t2; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1389t17; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1391t14" mRNA join(132169..132268,132523..132811,132995..134667, 134856..135108,135415..136222,136331..136455, 136706..136790,137071..137236,137339..>137367) /locus_tag="TCM_021544" /product="Endonuclease/exonuclease/phosphatase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s03970.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024214t1" /inference="similar to AA sequence:frave:gene08964" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.59 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1389t11; alternateUTRof:Thecc1EG021544t2; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1389t17; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1391t14" mRNA join(132169..132268,132523..132569,132733..134667, 134856..135108,135415..136222,136331..136455, 136706..136790,137071..137236,137339..>137367) /locus_tag="TCM_021544" /product="Endonuclease/exonuclease/phosphatase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s03970.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024214t1" /inference="similar to AA sequence:frave:gene08964" /note="transcript variant 6; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.59 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1389t9; alternateUTRof:Thecc1EG021544t2; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1389t17; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1391t14" mRNA join(132169..132268,132523..132569,132733..132811, 132995..134667,134856..135108,135415..136222, 136331..136455,136706..136790,137071..137236, 137339..>137367) /locus_tag="TCM_021544" /product="Endonuclease/exonuclease/phosphatase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s03970.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024214t1" /inference="similar to AA sequence:frave:gene08964" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.62 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1389t17; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1389t17; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1391t14" mRNA join(132787..134667,134856..135108,135415..136222, 136331..136455,136706..136790,137071..137379, 137469..137736,138460..138583,138663..139023, 139480..139918) /locus_tag="TCM_021544" /product="Endonuclease/exonuclease/phosphatase family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s03970.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024214t4" /inference="similar to AA sequence:Phytozome:POPTR_0017s03970.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1389t10; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1369t11; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1389t17" mRNA join(133193..134667,134856..135108,135415..136222, 136331..136455,136706..136790,137071..137236, 137339..137379,137469..137736,138460..138583, 138663..139023,139480..140193) /locus_tag="TCM_021544" /product="Endonuclease/exonuclease/phosphatase family protein isoform 7" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s03970.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024214t1" /inference="similar to AA sequence:frave:gene08964" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1369t11; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1369t11; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1389t17" mRNA join(133366..134667,134856..135108,135415..136222, 136331..136455,136706..136790,137071..137236, 137339..137379,137469..137736,138460..138583, 138663..139023,139480..139753,140481..141231) /locus_tag="TCM_021544" /product="Endonuclease/exonuclease/phosphatase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s03970.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024214t1" /inference="similar to AA sequence:frave:gene08964" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1369t11" CDS join(133842..134667,134856..135108,135415..136222, 136331..136455,136706..136790,137071..137236, 137339..137379,137469..137736,138460..138583, 138663..139023,139480..139753,140481..140485) /locus_tag="TCM_021544" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene08964; paralog of Thecc1EG024214t1" /codon_start=1 /product="Endonuclease/exonuclease/phosphatase family protein isoform 1" /protein_id="EOY06996.1" /db_xref="TAIR:AT2G43900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80560" /translation="MDEHTIQDDDDDRDALAGLSSAPTPQRNIHSYSQQLRAPSAQKR YHQVRNHSLDDIPKPLDHNYYNNDSSDDEFFPHSSSLSNNAPSAEEYIITSHSQRLDQ NLSLDGGPDDPRQCHTLPEFTGAGGGTGIFKVPMRATVHPGRPPFLELRPHPLRETQV GKFLRNIACTDTQLWAGQECGVRFWRFQDAYEPGLGAKVRRGDEDAVPFQESTNTSPT MCLLVDSGNRLVWSGHKDGKIRTWKMDQPADDTSPFKEGLSWQAHRGPVLSLIMSSYG DLWSGGEGGAIKIWPWESIEKSLSLRPEEKHMAALLVERSFIDLKSQVTVNGNCSISS SDIKCLISDHVRAKVWCSQPLSFSLWDARTKELLKVFNIDGQIENRVDMPSGQDQPVE DEMKVKFVSSSKKEKSGGFLQRSRNAIMGAADAVRRVATRGAGAFVEDNKRTEALVLS ADGMIWSGCTNGLLVQWDGNGSRLQEVNHHPCAVQCFCAFGARIYVGYVSGTVQVMDL EGNLIAGWVAHNGPVIKLAAGDGFIFSLASHGGLRGWSISSPGPIDSLLRSHLAEKES NYSIQDNVRIVVGTWNVGQGRASQESLMSWLGSVVSDVGIVVVGLQEVEMGAGFLAMS AAKETVGLEGSSIGHWWLDTIGKALDENTTFERMGSRQLAGLLISLWVRKNLRMHVGD IDAAAVPCGFGRAIGNKGGVGLRIRVFDRIMCFVNCHLAAHLEAVNRRNADFDHIYRN MVFTRSSNLLNNAAAGVSTAVQTLRATNAAGVNAEETKLDLAEADMVVFCGDFNYRLF GISYDEARDFVSQRCFDWLREKDQLRAEMKAGKVFQGMREALIRFPPTYKFERHRPGL AGYDSGEKKRIPAWCDRVIYRDNKSGPVSECSLECPIVSSILLYEACMDVTESDHKPV RCKFHSTIAHVDRSVRRQAFGEIIQSNEKVRSLLDELRYVPETVVSTNNIVLQNQDTS ILRITNKCEKEKAIFKIICEGQSTVKDDEEVADYHPRGSFGLPRWLEVTPAAGIIKPE QFVEVSVHHEEFHTLEDLVDGIPQNWWCEDTRDKEVILTVFVQGSCSTETTSHQIHVR HCFSAKTVRIDSKSNTHRKGQGG" CDS join(133842..134667,134856..135108,135415..136222, 136331..136455,136706..136790,137071..137379, 137469..137736,138460..138583,138663..139023, 139480..139827) /locus_tag="TCM_021544" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG024214t4" /codon_start=1 /product="Endonuclease/exonuclease/phosphatase family protein isoform 3" /protein_id="EOY06998.1" /db_xref="Phytozome:POPTR_0017s03970.1" /db_xref="TAIR:AT2G43900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80560" /translation="MDEHTIQDDDDDRDALAGLSSAPTPQRNIHSYSQQLRAPSAQKR YHQVRNHSLDDIPKPLDHNYYNNDSSDDEFFPHSSSLSNNAPSAEEYIITSHSQRLDQ NLSLDGGPDDPRQCHTLPEFTGAGGGTGIFKVPMRATVHPGRPPFLELRPHPLRETQV GKFLRNIACTDTQLWAGQECGVRFWRFQDAYEPGLGAKVRRGDEDAVPFQESTNTSPT MCLLVDSGNRLVWSGHKDGKIRTWKMDQPADDTSPFKEGLSWQAHRGPVLSLIMSSYG DLWSGGEGGAIKIWPWESIEKSLSLRPEEKHMAALLVERSFIDLKSQVTVNGNCSISS SDIKCLISDHVRAKVWCSQPLSFSLWDARTKELLKVFNIDGQIENRVDMPSGQDQPVE DEMKVKFVSSSKKEKSGGFLQRSRNAIMGAADAVRRVATRGAGAFVEDNKRTEALVLS ADGMIWSGCTNGLLVQWDGNGSRLQEVNHHPCAVQCFCAFGARIYVGYVSGTVQVMDL EGNLIAGWVAHNGPVIKLAAGDGFIFSLASHGGLRGWSISSPGPIDSLLRSHLAEKES NYSIQDNVRIVVGTWNVGQGRASQESLMSWLGSVVSDVGIVVVGLQEVEMGAGFLAMS AAKETVGLEGSSIGHWWLDTIGKALDENTTFERMGSRQLAGLLISLWVRKNLRMHVGD IDAAAVPCGFGRAIGNKGGVGLRIRVFDRIMCFVNCHLAAHLEAVNRRNADFDHIYRN MVFTRSSNLLNNAAGMVRLLFFCCSLAFSSYLFRLLYSSGLPLVLCVAAGVSTAVQTL RATNAAGVNAEETKLDLAEADMVVFCGDFNYRLFGISYDEARDFVSQRCFDWLREKDQ LRAEMKAGKVFQGMREALIRFPPTYKFERHRPGLAGYDSGEKKRIPAWCDRVIYRDNK SGPVSECSLECPIVSSILLYEACMDVTESDHKPVRCKFHSTIAHVDRSVRRQAFGEII QSNEKVRSLLDELRYVPETVVSTNNIVLQNQDTSILRITNKCEKEKAIFKIICEGQST VKDDEEVADYHPRGSFGLPRWLEVTPAAGIIKPEQFVEVSVHHEEFHTLEDLVDGIPQ NWWCEDTRDKEVILTVFVQGSCSTETTSHQIHVRHCFSAKTVRIDSKSNTHRKGQGGS LHRSELRQLSSSSDATDDSTRN" CDS join(133842..134667,134856..135108,135415..136222, 136331..136455,136706..136790,137071..137236, 137339..137379,137469..137736,138460..138583, 138663..139023,139480..139827) /locus_tag="TCM_021544" /note="encoded by transcript variant 7; alternatively spliced; dbxref frave:gene08964; paralog of Thecc1EG024214t1" /codon_start=1 /product="Endonuclease/exonuclease/phosphatase family protein isoform 7" /protein_id="EOY07002.1" /db_xref="TAIR:AT2G43900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80560" /translation="MDEHTIQDDDDDRDALAGLSSAPTPQRNIHSYSQQLRAPSAQKR YHQVRNHSLDDIPKPLDHNYYNNDSSDDEFFPHSSSLSNNAPSAEEYIITSHSQRLDQ NLSLDGGPDDPRQCHTLPEFTGAGGGTGIFKVPMRATVHPGRPPFLELRPHPLRETQV GKFLRNIACTDTQLWAGQECGVRFWRFQDAYEPGLGAKVRRGDEDAVPFQESTNTSPT MCLLVDSGNRLVWSGHKDGKIRTWKMDQPADDTSPFKEGLSWQAHRGPVLSLIMSSYG DLWSGGEGGAIKIWPWESIEKSLSLRPEEKHMAALLVERSFIDLKSQVTVNGNCSISS SDIKCLISDHVRAKVWCSQPLSFSLWDARTKELLKVFNIDGQIENRVDMPSGQDQPVE DEMKVKFVSSSKKEKSGGFLQRSRNAIMGAADAVRRVATRGAGAFVEDNKRTEALVLS ADGMIWSGCTNGLLVQWDGNGSRLQEVNHHPCAVQCFCAFGARIYVGYVSGTVQVMDL EGNLIAGWVAHNGPVIKLAAGDGFIFSLASHGGLRGWSISSPGPIDSLLRSHLAEKES NYSIQDNVRIVVGTWNVGQGRASQESLMSWLGSVVSDVGIVVVGLQEVEMGAGFLAMS AAKETVGLEGSSIGHWWLDTIGKALDENTTFERMGSRQLAGLLISLWVRKNLRMHVGD IDAAAVPCGFGRAIGNKGGVGLRIRVFDRIMCFVNCHLAAHLEAVNRRNADFDHIYRN MVFTRSSNLLNNAAAGVSTAVQTLRATNAAGVNAEETKLDLAEADMVVFCGDFNYRLF GISYDEARDFVSQRCFDWLREKDQLRAEMKAGKVFQGMREALIRFPPTYKFERHRPGL AGYDSGEKKRIPAWCDRVIYRDNKSGPVSECSLECPIVSSILLYEACMDVTESDHKPV RCKFHSTIAHVDRSVRRQAFGEIIQSNEKVRSLLDELRYVPETVVSTNNIVLQNQDTS ILRITNKCEKEKAIFKIICEGQSTVKDDEEVADYHPRGSFGLPRWLEVTPAAGIIKPE QFVEVSVHHEEFHTLEDLVDGIPQNWWCEDTRDKEVILTVFVQGSCSTETTSHQIHVR HCFSAKTVRIDSKSNTHRKGQGGSLHRSELRQLSSSSDATDDSTRN" CDS join(133842..134667,134856..135108,135415..136222, 136331..136455,136706..136790,137071..137236, 137339..>137367) /locus_tag="TCM_021544" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene08964; paralog of Thecc1EG024214t1" /codon_start=1 /product="Endonuclease/exonuclease/phosphatase family protein isoform 2" /protein_id="EOY06997.1" /db_xref="TAIR:AT2G43900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80560" /translation="MDEHTIQDDDDDRDALAGLSSAPTPQRNIHSYSQQLRAPSAQKR YHQVRNHSLDDIPKPLDHNYYNNDSSDDEFFPHSSSLSNNAPSAEEYIITSHSQRLDQ NLSLDGGPDDPRQCHTLPEFTGAGGGTGIFKVPMRATVHPGRPPFLELRPHPLRETQV GKFLRNIACTDTQLWAGQECGVRFWRFQDAYEPGLGAKVRRGDEDAVPFQESTNTSPT MCLLVDSGNRLVWSGHKDGKIRTWKMDQPADDTSPFKEGLSWQAHRGPVLSLIMSSYG DLWSGGEGGAIKIWPWESIEKSLSLRPEEKHMAALLVERSFIDLKSQVTVNGNCSISS SDIKCLISDHVRAKVWCSQPLSFSLWDARTKELLKVFNIDGQIENRVDMPSGQDQPVE DEMKVKFVSSSKKEKSGGFLQRSRNAIMGAADAVRRVATRGAGAFVEDNKRTEALVLS ADGMIWSGCTNGLLVQWDGNGSRLQEVNHHPCAVQCFCAFGARIYVGYVSGTVQVMDL EGNLIAGWVAHNGPVIKLAAGDGFIFSLASHGGLRGWSISSPGPIDSLLRSHLAEKES NYSIQDNVRIVVGTWNVGQGRASQESLMSWLGSVVSDVGIVVVGLQEVEMGAGFLAMS AAKETVGLEGSSIGHWWLDTIGKALDENTTFERMGSRQLAGLLISLWVRKNLRMHVGD IDAAAVPCGFGRAIGNKGGVGLRIRVFDRIMCFVNCHLAAHLEAVNRRNADFDHIYRN MVFTRSSNLLNNAAAGVSTAVQTL" CDS join(133842..134667,134856..135108,135415..136222, 136331..136455,136706..136790,137071..137236, 137339..>137367) /locus_tag="TCM_021544" /note="encoded by transcript variant 4; alternatively spliced; dbxref frave:gene08964; paralog of Thecc1EG024214t1" /codon_start=1 /product="Endonuclease/exonuclease/phosphatase family protein isoform 2" /protein_id="EOY06999.1" /db_xref="TAIR:AT2G43900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80560" /translation="MDEHTIQDDDDDRDALAGLSSAPTPQRNIHSYSQQLRAPSAQKR YHQVRNHSLDDIPKPLDHNYYNNDSSDDEFFPHSSSLSNNAPSAEEYIITSHSQRLDQ NLSLDGGPDDPRQCHTLPEFTGAGGGTGIFKVPMRATVHPGRPPFLELRPHPLRETQV GKFLRNIACTDTQLWAGQECGVRFWRFQDAYEPGLGAKVRRGDEDAVPFQESTNTSPT MCLLVDSGNRLVWSGHKDGKIRTWKMDQPADDTSPFKEGLSWQAHRGPVLSLIMSSYG DLWSGGEGGAIKIWPWESIEKSLSLRPEEKHMAALLVERSFIDLKSQVTVNGNCSISS SDIKCLISDHVRAKVWCSQPLSFSLWDARTKELLKVFNIDGQIENRVDMPSGQDQPVE DEMKVKFVSSSKKEKSGGFLQRSRNAIMGAADAVRRVATRGAGAFVEDNKRTEALVLS ADGMIWSGCTNGLLVQWDGNGSRLQEVNHHPCAVQCFCAFGARIYVGYVSGTVQVMDL EGNLIAGWVAHNGPVIKLAAGDGFIFSLASHGGLRGWSISSPGPIDSLLRSHLAEKES NYSIQDNVRIVVGTWNVGQGRASQESLMSWLGSVVSDVGIVVVGLQEVEMGAGFLAMS AAKETVGLEGSSIGHWWLDTIGKALDENTTFERMGSRQLAGLLISLWVRKNLRMHVGD IDAAAVPCGFGRAIGNKGGVGLRIRVFDRIMCFVNCHLAAHLEAVNRRNADFDHIYRN MVFTRSSNLLNNAAAGVSTAVQTL" CDS join(133842..134667,134856..135108,135415..136222, 136331..136455,136706..136790,137071..137236, 137339..>137367) /locus_tag="TCM_021544" /note="encoded by transcript variant 5; alternatively spliced; dbxref frave:gene08964; paralog of Thecc1EG024214t1" /codon_start=1 /product="Endonuclease/exonuclease/phosphatase family protein isoform 2" /protein_id="EOY07000.1" /db_xref="TAIR:AT2G43900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80560" /translation="MDEHTIQDDDDDRDALAGLSSAPTPQRNIHSYSQQLRAPSAQKR YHQVRNHSLDDIPKPLDHNYYNNDSSDDEFFPHSSSLSNNAPSAEEYIITSHSQRLDQ NLSLDGGPDDPRQCHTLPEFTGAGGGTGIFKVPMRATVHPGRPPFLELRPHPLRETQV GKFLRNIACTDTQLWAGQECGVRFWRFQDAYEPGLGAKVRRGDEDAVPFQESTNTSPT MCLLVDSGNRLVWSGHKDGKIRTWKMDQPADDTSPFKEGLSWQAHRGPVLSLIMSSYG DLWSGGEGGAIKIWPWESIEKSLSLRPEEKHMAALLVERSFIDLKSQVTVNGNCSISS SDIKCLISDHVRAKVWCSQPLSFSLWDARTKELLKVFNIDGQIENRVDMPSGQDQPVE DEMKVKFVSSSKKEKSGGFLQRSRNAIMGAADAVRRVATRGAGAFVEDNKRTEALVLS ADGMIWSGCTNGLLVQWDGNGSRLQEVNHHPCAVQCFCAFGARIYVGYVSGTVQVMDL EGNLIAGWVAHNGPVIKLAAGDGFIFSLASHGGLRGWSISSPGPIDSLLRSHLAEKES NYSIQDNVRIVVGTWNVGQGRASQESLMSWLGSVVSDVGIVVVGLQEVEMGAGFLAMS AAKETVGLEGSSIGHWWLDTIGKALDENTTFERMGSRQLAGLLISLWVRKNLRMHVGD IDAAAVPCGFGRAIGNKGGVGLRIRVFDRIMCFVNCHLAAHLEAVNRRNADFDHIYRN MVFTRSSNLLNNAAAGVSTAVQTL" CDS join(133842..134667,134856..135108,135415..136222, 136331..136455,136706..136790,137071..137236, 137339..>137367) /locus_tag="TCM_021544" /note="encoded by transcript variant 6; alternatively spliced; dbxref frave:gene08964; paralog of Thecc1EG024214t1" /codon_start=1 /product="Endonuclease/exonuclease/phosphatase family protein isoform 2" /protein_id="EOY07001.1" /db_xref="TAIR:AT2G43900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80560" /translation="MDEHTIQDDDDDRDALAGLSSAPTPQRNIHSYSQQLRAPSAQKR YHQVRNHSLDDIPKPLDHNYYNNDSSDDEFFPHSSSLSNNAPSAEEYIITSHSQRLDQ NLSLDGGPDDPRQCHTLPEFTGAGGGTGIFKVPMRATVHPGRPPFLELRPHPLRETQV GKFLRNIACTDTQLWAGQECGVRFWRFQDAYEPGLGAKVRRGDEDAVPFQESTNTSPT MCLLVDSGNRLVWSGHKDGKIRTWKMDQPADDTSPFKEGLSWQAHRGPVLSLIMSSYG DLWSGGEGGAIKIWPWESIEKSLSLRPEEKHMAALLVERSFIDLKSQVTVNGNCSISS SDIKCLISDHVRAKVWCSQPLSFSLWDARTKELLKVFNIDGQIENRVDMPSGQDQPVE DEMKVKFVSSSKKEKSGGFLQRSRNAIMGAADAVRRVATRGAGAFVEDNKRTEALVLS ADGMIWSGCTNGLLVQWDGNGSRLQEVNHHPCAVQCFCAFGARIYVGYVSGTVQVMDL EGNLIAGWVAHNGPVIKLAAGDGFIFSLASHGGLRGWSISSPGPIDSLLRSHLAEKES NYSIQDNVRIVVGTWNVGQGRASQESLMSWLGSVVSDVGIVVVGLQEVEMGAGFLAMS AAKETVGLEGSSIGHWWLDTIGKALDENTTFERMGSRQLAGLLISLWVRKNLRMHVGD IDAAAVPCGFGRAIGNKGGVGLRIRVFDRIMCFVNCHLAAHLEAVNRRNADFDHIYRN MVFTRSSNLLNNAAAGVSTAVQTL" mobile_element 139877..139934 /note="source:CACAO_M_S_E32752_F12_scaffold_4 4117 4172" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 140176..140515 /note="source:scaffold_10_CACTA_0130 7927 8270" /mobile_element_type="transposon:TIR/CACTA" mobile_element 140522..141812 /note="source:scaffold_10_CACTA_0130 8380 9607" /mobile_element_type="transposon:TIR/CACTA" gene complement(141877..145909) /locus_tag="TCM_021545" /note="dbxref CacaoGD:Thecc1EG021545" mRNA complement(join(141877..143594,143938..144347, 144866..145909)) /locus_tag="TCM_021545" /product="Ankyrin repeat family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s03960.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041926t2" /inference="similar to AA sequence:Phytozome:POPTR_0017s03960.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g74t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g74t2" mRNA complement(join(141877..143594,143938..144347, 144606..144774)) /locus_tag="TCM_021545" /product="Ankyrin repeat family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s03960.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041926t2" /inference="similar to AA sequence:Phytozome:Glyma03g42530.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g74t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g74t2" CDS complement(join(142734..143594,143938..144347, 144866..145430)) /locus_tag="TCM_021545" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG041926t2" /codon_start=1 /product="Ankyrin repeat family protein isoform 1" /protein_id="EOY07003.1" /db_xref="Phytozome:POPTR_0017s03960.1" /db_xref="TAIR:AT2G31820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SKB8" /translation="MEKQQSFHAVTTEKQSSSQGCMEKQQSFKQSTARGVVEKQLSFR GVTNDRQPSGHGLMVKQKSFRGVMEKQKSFRVVMERQLSFIGAGERRKNRESPGKRGD SPLHLAARTGNLSRVREILQNSDGPNAKEFLAKQNLEGETPLYVAAENGQAVIVAEML KHVDLETASITARNGYDPFHVAAKQGHVEVLEELLGTFPNSAMTTDLSCTTALHTAAA KGHIDVVNLLLETDSDLAKIARNNGKTVLHSAARNGHLEVVKSLLSKDPSTGFRVDRK GQTALHMAVKGQNEEIVLELLKPDPSVLGLEDNRGNTALHIAIKKGHTEIVRCLLSVE RININATNKAGESPLDLAEKMGTPELVSILKEAGATNSKDHGKPPNAAKQLKQTVSDI KHDVQSQLQQTRQTGFRVQKIAKRLKKLHISGLNNAINSATVVAVLIATVAFAAIFTV PGQYVEDMKEGVSLGQAHIANKTPFIVFFVFDSLALFISLAVVVVQTSVVVIEQKAKK QLVFVINKLMWLACLFISVAFISLTYVVVGKQSRWLAVCATVIGSSIMLTTIGSMCYF VILHRMEESKLRSIRKAESRSRSFSMSMASEPEILNSEYKRMYAL" CDS complement(join(142734..143594,143938..144306)) /locus_tag="TCM_021545" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG041926t2" /codon_start=1 /product="Ankyrin repeat family protein isoform 2" /protein_id="EOY07004.1" /db_xref="Phytozome:Glyma03g42530.1" /db_xref="TAIR:AT2G31820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SKB8" /translation="MTTDLSCTTALHTAAAKGHIDVVNLLLETDSDLAKIARNNGKTV LHSAARNGHLEVVKSLLSKDPSTGFRVDRKGQTALHMAVKGQNEEIVLELLKPDPSVL GLEDNRGNTALHIAIKKGHTEIVRCLLSVERININATNKAGESPLDLAEKMGTPELVS ILKEAGATNSKDHGKPPNAAKQLKQTVSDIKHDVQSQLQQTRQTGFRVQKIAKRLKKL HISGLNNAINSATVVAVLIATVAFAAIFTVPGQYVEDMKEGVSLGQAHIANKTPFIVF FVFDSLALFISLAVVVVQTSVVVIEQKAKKQLVFVINKLMWLACLFISVAFISLTYVV VGKQSRWLAVCATVIGSSIMLTTIGSMCYFVILHRMEESKLRSIRKAESRSRSFSMSM ASEPEILNSEYKRMYAL" gene complement(150561..152731) /locus_tag="TCM_021546" /note="dbxref CacaoGD:Thecc1EG021546" mRNA complement(join(150561..151394,151513..151741, 151863..152152,152254..152731)) /locus_tag="TCM_021546" /product="Pectin lyase-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s03950.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021547t1" /inference="similar to AA sequence:Phytozome:POPTR_0017s03950.1" /note="quality class is strong, express is none, homology is ortholog strong, intron is none, protein is complete" CDS complement(join(151176..151394,151513..151741, 151863..152152,152254..152694)) /locus_tag="TCM_021546" /note="paralog of Thecc1EG021547t1" /codon_start=1 /product="Pectin lyase-like superfamily protein" /protein_id="EOY07005.1" /db_xref="Phytozome:POPTR_0017s03950.1" /db_xref="TAIR:AT2G43890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SYK6" /translation="MAPKLVVSCAILFYLLFFCGTSSYAAYSINLIKYGAKPDGKTDS TQPFLKAWAAACKSATAATIYVPKGRYLVKAVVFRGPCRNRITVQIDGTIVAPTDYRA LGNSGYWILFIKVNRVSVIGGTLDAKGAGFWTCRRSGKNCPVGARSITFNWANNILVS GLTSINSQLTHFVINTCNDVKVQNVKLYAPDQSPNTDGIHVQSSTGLTITGSTLQTGD DCISIGPGTRNLVMTSIKCGPGHGVSIGSLGRDLNEAGVQNVTLTNSVFSGSDNGVRI KTWARPSNGFVKNVVFENIIMNNVKNPIIIDQNYCPSNQGCPSQSSGVKISGVTYKNI RGTSATQEAVTFDCSRSSPCRGITLHDIKLTHMNKAATSSCKNVGGTSRGVVVPKSCL " mobile_element 154534..155338 /note="source:CACAO_Again_on_S_E38_scaffold_1 1 789" /mobile_element_type="transposon:TIR/hAT" gene 157744..160407 /locus_tag="TCM_021547" /note="dbxref CacaoGD:Thecc1EG021547" mRNA join(157744..158288,158952..159241,159353..159581, 159705..160407) /locus_tag="TCM_021547" /product="Polygalacturonase" /inference="alignment:exonerate-protein:2:frave:gene31695" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021548t1" /inference="similar to AA sequence:ricco:30042.m000468" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc3707t1" CDS join(157842..158288,158952..159241,159353..159581, 159705..159923) /locus_tag="TCM_021547" /note="dbxref ricco:30042.m000468; paralog of Thecc1EG021548t1" /codon_start=1 /product="Polygalacturonase" /protein_id="EOY07006.1" /db_xref="TAIR:AT2G43870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P48979" /translation="MANTMTHPPLLFLALLFLFFNSSVAAAMKLNVISYGAKADGTTD STKAFLAAWTQACASTIPASIYVPKGRFLLRNVDFRGQCNNAAISIRIDGTLVAPMDY RVIGNVDSWLSFENVDGVSIYGGKLDGKGTGLWACKNSGKSCPSGATSLSISNSKNIV IMGLTSLNSQMFHIVINGCHNVKMQGVKVSAPGNSPNTDGIHVQLSSSVTILNSRIQT GDDCISIGPGATNLWMENIACGPGHGISIGSLGKDQIEAGVQNVTVKTATFIGTQNGV RIKSWARPSNGFASNIVFQHVVMKNVQNPIVIDQNYCPGYKNCPDQVSGVKVSDVTYQ DIHGTSATEVAVKFDCSSKHPCTGIRLEEVKLTYKNEAAQASCSHAGGTVSGLVQPTS CL" gene 160454..164783 /locus_tag="TCM_021548" /note="dbxref CacaoGD:Thecc1EG021548" mRNA join(160454..160532,161037..161724,162103..162182, 162470..162512,162596..162653,162758..163170, 163326..163615,163734..163962,164079..164783) /locus_tag="TCM_021548" /product="Pectin lyase-like superfamily protein" /inference="alignment:exonerate- protein:2:frave:gene31695.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021547t1" /inference="similar to AA sequence:ricco:30042.m000468" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete" CDS join(161479..161724,162103..162182,162470..162512, 162596..162653,162758..163170,163326..163615, 163734..163962,164079..164297) /locus_tag="TCM_021548" /note="dbxref ricco:30042.m000468; paralog of Thecc1EG021547t1" /codon_start=1 /product="Pectin lyase-like superfamily protein" /protein_id="EOY07007.1" /db_xref="TAIR:AT3G59850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P48979" /translation="MMKMGNLIKKLIFDEYEEVRDKQMEKEAGSEAGKLALFSCLSLK QSVGHNTTIHNIAPGNKKYGRGPHSLLLVTALSHMLLLELSMHQLSSEITISERMSCS IKLKLIVSKKFVSDLNVRRYQQFHLLTPPLLSLLLSPLVFRLVLLFFTSSGAAPLAPT YSVLNYGAKPDGNFDSAQAFVAAWTLACGSINPATIYVPPGRFLLRNVVFRGQCKNSA ILFSIDGTLVAPSNYNIIGNTGNWLIFEHVNGVSIYGGILDGQGVGLWTCKRSGRGCP SGATSLRFSNSWNIVINGLTSLNSQMFHIVINGCNNVKVEGVRLSASGNSPNTDGIHV QSSSSVTILNSRIGTGDDCISVGPGTSNLWIENVACGPGHGISIGSLGKEFEEPGVQN VTVKSVTFTGTQNGVRIKSWGRPSTGYARNILFQHAVMTDVENPIVIDQHYCPDEKNC PGQVSGVKISDVTYQDIHGTSATEVALKFDCSSNNPCTDIRLDGVKLTYKNRPAEAAC SNADGTASGFVQASSCL" gene 165036..167070 /locus_tag="TCM_021549" /note="dbxref CacaoGD:Thecc1EG021549" mRNA join(165036..165144,165245..165318,165501..165645, 165940..167070) /locus_tag="TCM_021549" /product="Kinase interacting family protein, putative" /inference="alignment:exonerate- protein:2:ricco:29657.m000486" /inference="similar to AA sequence:Phytozome:GSVIVT01013578001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06684t00001" CDS join(165046..165144,165245..165318,165501..165645, 165940..166527) /locus_tag="TCM_021549" /codon_start=1 /product="Kinase interacting family protein, putative" /protein_id="EOY07008.1" /db_xref="Phytozome:GSVIVT01013578001" /db_xref="TAIR:AT1G58210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7U8W8" /translation="MGRRRGTRYSPKPYKSDHPVAAATPLANLSLNFVLLHDWWLGRA QPRGLAIGGFECRGRQGQRVFCSAAIAKRHDATTLETADGITVAISGFINTSRTHQNG FPLEFCSHFLYGFPYDWEEYASQYSNEESAGRGTQASMTSHSNAVSFLPASLDNLPAT RIRDLLMFSAGDSENSFLKRTITDHVLGKLSTHASQDARTSVDSDMGNTHSNTCSYSA DGENSNCHKKVKVNRNHMDDNNISDSRSTITVESQNDVQSKMGVSILTRPTGVTTRSM TRLKYLTQKQEGLSSKSSVKHIKAV" gene complement(167411..170889) /locus_tag="TCM_021550" /note="dbxref CacaoGD:Thecc1EG021550" mRNA complement(join(167411..167797,167915..168007, 168425..168584,168751..168860,169352..169407, 169596..170889)) /locus_tag="TCM_021550" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s02350.1" /inference="similar to AA sequence:Phytozome:POPTR_0007s02350.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g171t2" mRNA complement(join(167420..167797,167915..167944, 169352..169407,169596..170789)) /locus_tag="TCM_021550" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s02350.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc70t5_C1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g171t2" CDS complement(join(167657..167797,167915..167944, 169352..169407,169596..170370)) /locus_tag="TCM_021550" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY07011.1" /translation="MKCVKTHCLPLPLRSPSPSPPLFLFGSTQLKTWSPQLSFSTPRR SRRSRLPRNPNYDNHNLSLRRSIEFQNSPDNPNVKLVLDFDQISSLSSSKLNRLISFS TDAFQDLRNLVQIDPDTRTLQLSCRKSTLQFLAAFLTCGFVIVFAFTVLVKLGLGLKA RFRPKHKVIVRRDRSLGGREVIVGTKRDGGDPPSFRALDNPLSLSTARPLSTKTNYPR LQVQLGDKLPKWWPEMDSVPKEGSVFNSEYYQTQANRLIRAIIDSRLGGKDITEEDII QHRIFPPEESSPEMEMVARGLEKLLKVEQRELLMGMLVGVCSGESRRSAAEALGLVC" CDS complement(join(167657..167797,167915..168007, 168425..168584,168751..168860,169352..169407, 169596..170370)) /locus_tag="TCM_021550" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY07009.1" /db_xref="Phytozome:POPTR_0007s02350.1" /db_xref="TAIR:AT2G43235.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHD1" /translation="MKCVKTHCLPLPLRSPSPSPPLFLFGSTQLKTWSPQLSFSTPRR SRRSRLPRNPNYDNHNLSLRRSIEFQNSPDNPNVKLVLDFDQISSLSSSKLNRLISFS TDAFQDLRNLVQIDPDTRTLQLSCRKSTLQFLAAFLTCGFVIVFAFTVLVKLGLGLKA RFRPKHKVIVRRDRSLGGREVIVGTKRDGGDPPSFRALDNPLSLSTARPLSTKTNYPR LQVQLGDKLPKWWPEMDSVPKEGSVFNSEYYQTQANRLIRAIIDSRLGGKDITEEDII QLRQICRTSGVRVSIDTTNTRDSFYRVSVELVLNVCCRVPSQSTHVQIDGEDARQFLA GLAENIGLDNTRAARMVSAGVAARTRFIFLQAWAFEMQGKHSEAMLELSKICLVHRIF PPEESSPEMEMVARGLEKLLKVEQRELLMGMLVGVCSGESRRSAAEALGLVC" mRNA complement(join(<168561..168595,168751..168860, 169352..169407,169596..170789)) /locus_tag="TCM_021550" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s02350.1" /inference="similar to AA sequence:ricco:29657.m000484" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc70t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g171t2" CDS complement(join(<168562..168595,168751..168860, 169352..169407,169596..170370)) /locus_tag="TCM_021550" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29657.m000484" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY07010.1" /db_xref="TAIR:AT2G43235.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHD1" /translation="MKCVKTHCLPLPLRSPSPSPPLFLFGSTQLKTWSPQLSFSTPRR SRRSRLPRNPNYDNHNLSLRRSIEFQNSPDNPNVKLVLDFDQISSLSSSKLNRLISFS TDAFQDLRNLVQIDPDTRTLQLSCRKSTLQFLAAFLTCGFVIVFAFTVLVKLGLGLKA RFRPKHKVIVRRDRSLGGREVIVGTKRDGGDPPSFRALDNPLSLSTARPLSTKTNYPR LQVQLGDKLPKWWPEMDSVPKEGSVFNSEYYQTQANRLIRAIIDSRLGGKDITEEDII QLRQICRTSGVRVSIDTTNTRDSFYRVSVELVLNVCCRYFAGCQVNLPM" gene complement(170867..177101) /locus_tag="TCM_021551" /note="dbxref CacaoGD:Thecc1EG021551" mRNA complement(join(170867..170960,171141..171312, 171655..171721,171817..171862,172203..172282, 172398..172531,172694..172801,173083..173152, 173579..173656,173833..173955,174124..174183, 174771..174815,174993..175070,175321..175377, 175669..175785,175955..176146,176767..177101)) /locus_tag="TCM_021551" /product="Nucleotide-sugar transporter family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g39020.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025074t1" /inference="similar to AA sequence:Phytozome:GSVIVT01013580001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g231t2" mRNA complement(join(170911..171312,171654..171721, 171817..171862,172203..172282,172398..172531, 172694..172801,173083..173152,173579..173656, 173833..173955,174124..174183,174771..174815, 174993..175070,175321..175377,175669..175785, 175955..176146,176767..177090)) /locus_tag="TCM_021551" /product="Nucleotide-sugar transporter family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g39020.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025074t1" /inference="similar to AA sequence:Phytozome:GSVIVT01013580001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g231t5; alternateUTRof:Thecc1EG021551t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g231t2" CDS complement(join(171671..171721,171817..171862, 172203..172282,172398..172531,172694..172801, 173083..173152,173579..173656,173833..173955, 174124..174183,174771..174815,174993..175070, 175321..175377,175669..175785,175955..176122)) /locus_tag="TCM_021551" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG025074t1" /codon_start=1 /product="Nucleotide-sugar transporter family protein isoform 1" /protein_id="EOY07012.1" /db_xref="Phytozome:GSVIVT01013580001" /db_xref="TAIR:AT2G43240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GY97" /translation="MKNGMIECSVCHSKLVSPTTRGVSRAYDRHKSRVSSKQRVLNVF LVVGDCVLVGFQPILVYMSKVDGRFMFSPISVNFLTEVAKVLFAVVMLIFQARNQKVG EKPLLSISTFMQAARNNVLLAVPALLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIA VLLKIIMRRRFSVIQWEALALLLIGISVNQLRSLPEGTTALGLPVSTGAYIYTLIFVT VPSLASVYNEYALKSQYETSIYLQNLFLYGYGAIFNFLAILGTAVIKGPSSFDILQGH SKATMLLIFNNAAQGILSSFFFKYADTILKKYSSTVATIFTGIASAALFGHTLTMNFI LGISIVFISMHQFFSPLSKVKDEQQNGKLELVDYQDNHRSKESFINMAAGANEEASHR VGSDERQPLLPT" CDS complement(join(171671..171721,171817..171862, 172203..172282,172398..172531,172694..172801, 173083..173152,173579..173656,173833..173955, 174124..174183,174771..174815,174993..175070, 175321..175377,175669..175785,175955..176122)) /locus_tag="TCM_021551" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG025074t1" /codon_start=1 /product="Nucleotide-sugar transporter family protein isoform 1" /protein_id="EOY07013.1" /db_xref="Phytozome:GSVIVT01013580001" /db_xref="TAIR:AT2G43240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GY97" /translation="MKNGMIECSVCHSKLVSPTTRGVSRAYDRHKSRVSSKQRVLNVF LVVGDCVLVGFQPILVYMSKVDGRFMFSPISVNFLTEVAKVLFAVVMLIFQARNQKVG EKPLLSISTFMQAARNNVLLAVPALLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIA VLLKIIMRRRFSVIQWEALALLLIGISVNQLRSLPEGTTALGLPVSTGAYIYTLIFVT VPSLASVYNEYALKSQYETSIYLQNLFLYGYGAIFNFLAILGTAVIKGPSSFDILQGH SKATMLLIFNNAAQGILSSFFFKYADTILKKYSSTVATIFTGIASAALFGHTLTMNFI LGISIVFISMHQFFSPLSKVKDEQQNGKLELVDYQDNHRSKESFINMAAGANEEASHR VGSDERQPLLPT" gene 177555..180459 /locus_tag="TCM_021552" /note="dbxref CacaoGD:Thecc1EG021552" mRNA 177555..180459 /locus_tag="TCM_021552" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s06350.1" /inference="similar to AA sequence:Phytozome:POPTR_0007s02340.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc606t7" CDS 178107..179987 /locus_tag="TCM_021552" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07014.1" /db_xref="Phytozome:POPTR_0007s02340.1" /db_xref="TAIR:AT2G43250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9P4W3" /translation="MAFAFLYKLQNLWPFKIDDLRTSHDLVRKLSIPDHTKKFVFAVT LPHTQSVIYILSAQNLSERSAADAECLIRELRPDAVVAQISHQALFEIQSQDTEIGDN LDNTIPTSSFGVLKRCFVDKINKDNYENVAGKLVLREIFGVGFHGHFLAAKGAAREVG SSFMVLESPFTSNFPMQDPSREVEAGSKVKGLVSSLVPQKSTLVLASSCRRFCITNDV RSQLVKFLSSHIDLLDSGSVSEVDSNEIQPRKGYEAPPFAQSVYPLLVDLHDIFVDLP PIGRALALSQKMLLDVNRGEVVDTRIISEVYTFRIAVEALRVALNNAGRLPIDKLQNA NTSKVSFSELPIEDKSHAFHAQALQSLSKKFKTIVAIVDASSLAGLRKNWNTPVPPEV KDLVVHLVTDGAGDGDGEPSSHIDRKQLLSNKPVVAVGAGVTAVFGASSISKLIPAST FMKIITLKVPASVKLVMTQTQKVVAMALGKTLGPSKLVAPGLASSGVNSSVFKAAASA EKIRTVVHGVIASAEKTSFSAMRTAFYEIMRKRQVQPIGVLPWATFGCSIATCTSLLV YGAGIECAAESLPAARSIASLGRGIQSLQQASQAVRQTEGNRIQKSIESLMYRLKKVK IQ" gene 180514..182415 /locus_tag="TCM_021553" /note="dbxref CacaoGD:Thecc1EG021553" mRNA join(180514..181263,181563..181888,182307..182415) /locus_tag="TCM_021553" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29657.m000466" /inference="similar to AA sequence:Phytozome:POPTR_0017s06230.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g293t1" CDS join(180641..181263,181563..181827) /locus_tag="TCM_021553" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07015.1" /db_xref="Phytozome:POPTR_0017s06230.1" /db_xref="TAIR:AT2G31600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MY02" /translation="MIMSSSGSKQQPSSSKPPKTPNPITHPDLLNPNPAAAKSNIIKM SPPPNPLGLTPQDVVLSRASHLTRQELLKRRLQHLKQLSRCYRDHYWALMEDVKIQYR DYYWKFGVSPFRHELNHDPADGDIGANPSNNIEGSADNNLVNNNNYNINVNVNNHNNT SLDFKNNHRCLFVGCKFKAMALTSFCHLHILSDSKQKLYKACTYVIKSAQAGPITCGK PILRSTVPSLCTVHFQKAQKHVNRALKKAGLNVASSSKLAPKFHVIVAEYVHQIQAKR RAAPKGDTSKPTIKEESAS" gene complement(182507..186519) /locus_tag="TCM_021554" /note="dbxref CacaoGD:Thecc1EG021554" mRNA complement(join(182507..182722,183544..183951, 184313..184391,184752..184827,184913..185003, 185501..185571,185877..185928,186044..186141, 186228..186519)) /locus_tag="TCM_021554" /product="RNA-binding family protein" /inference="alignment:exonerate-protein:2:frave:gene06632" /inference="similar to AA sequence:Phytozome:GSVIVT01010733001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g295t2" CDS complement(join(183544..183951,184313..184391, 184752..184827,184913..185003,185501..185571, 185877..185928,186044..186141,186228..186369)) /locus_tag="TCM_021554" /codon_start=1 /product="RNA-binding family protein" /protein_id="EOY07016.1" /db_xref="Phytozome:GSVIVT01010733001" /db_xref="TAIR:AT2G43370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MY05" /translation="MGGSNNVNSVFYAETYHPIQAGSIDGTDILPHDNAVYRALLCSN ASLYDPLGDPKLIGDPYHTIFVSRLSHLTTEHTLHKAMSKYGRVKNLRLVRHIVTGAS RGYAFVEFETEREMRRAYKDAHHSFIDDSEVIVDYNRQQLMPGWIPRRLGGGLGGKKE SGQLRFGGRERPFRAPLRQIPYEDLKTLGIRPPPEGRYMSRFQVPSPPRKRRSSVEKE EYSHKRSSVDREEFSQRSSSIERDGHKRTAGGRQESSSKRNSVEEEHHHRKSSTDRSE SSQKRTPIEREDHRHKCSFVDREELSHSRSTAEGGEISRKRTSKDKEERSSKRHRHHG RSNR" mobile_element complement(185269..185370) /note="source:scaffold_3_CACTA_0396 880 983" /mobile_element_type="transposon:TIR/CACTA" gene 186492..190112 /locus_tag="TCM_021555" /note="dbxref CacaoGD:Thecc1EG021555" mRNA join(186492..187011,187226..187405,188110..188216, 188428..188633,189136..189275,189581..190112) /locus_tag="TCM_021555" /product="Radical SAM superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01010734001" /inference="similar to AA sequence:ricco:29657.m000468" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00087t00001" CDS join(186826..187011,187226..187405,188110..188216, 188428..188633,189136..189275,189581..189889) /locus_tag="TCM_021555" /note="dbxref ricco:29657.m000468" /codon_start=1 /product="Radical SAM superfamily protein" /protein_id="EOY07017.1" /db_xref="TAIR:AT2G43360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P54967" /translation="MLSIRSPAAQLLLRSCSFYSTTASAAAVEAERTIREGPRNDWTR QQIKSIYDSPVLDLLFHGAQVHRYAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYH TGLKAQKLMTKEAVMQAAKQAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKQIRDM GMEVCCTLGMLEKQQALELKKAGLTAYNHNLDTSREYYPNIITTRTYDERLETLQHVR EAGINVCSGGIIGLGEAEEDRVGLLHTLATLPSHPESVPINALVAVKGTPLQDQKPVE IWEMIRMIATARIAMPKSMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNND FDADQLMFKILGLIPKAPSFSEEAAKTSEAENCEEALSSSG" gene complement(189485..202886) /locus_tag="TCM_021556" /note="dbxref CacaoGD:Thecc1EG021556" mRNA complement(join(189485..190530,190645..190736, 190842..190953,191170..191235,191653..191775, 192050..192117,192242..192305,192699..192840, 192967..193055,193517..193580,193669..193772, 193996..194133,194251..194376,194810..195022, 195172..195255,195410..195569,196191..196324, 196596..196685,197278..197436,197650..197728, 198951..199048,199410..199523,200189..200354, 200878..201095,201638..201781,201966..202031, 202123..202886)) /locus_tag="TCM_021556" /product="TRNA synthetase class I (I, L, M and V) family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s02170.1" /inference="similar to AA sequence:ricco:29657.m000469" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g513t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g513t5" CDS complement(join(190423..190530,190645..190736, 190842..190953,191170..191235,191653..191775, 192050..192117,192242..192305,192699..192840, 192967..193055,193517..193580,193669..193772, 193996..194133,194251..194376,194810..195022, 195172..195255,195410..195569,196191..196324, 196596..196685,197278..197436,197650..197728, 198951..199048,199410..199523,200189..200354, 200878..201095,201638..201781,201966..202031, 202123..202656)) /locus_tag="TCM_021556" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29657.m000469" /codon_start=1 /product="TRNA synthetase class I (I, L, M and V) family protein isoform 1" /protein_id="EOY07018.1" /db_xref="TAIR:AT4G10320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SV89" /translation="MEDVSEGKDFSFPSQEEHILSYWSQIDAFKGQLARTQNLPEYIF YDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVESEIDRKLG INRRDQVLDMGIDKYNEECRSVVTRYVEEWEDIISRTGRWIDFKNDYKTMDLKFMESV WWAFGQLYQKGLIYKGFKVMPYSTGCKTPLSNFEAGENYKLVPDPELMVAFPIVGAPD NAAFVAWTTTPWTLPSNLALCVNANLVYVKARNKYSGKIYVAAESRLSELPTEKPKSN AAKGPSGDSKKSKTKGSSGEKTKDSTADSYEVLDKFSGASLVGTKYEPLFNYFLEFSN AAFRVIADNYVTDDSGTGIVHCAPAFGEDDYRVCIGNQIINKGENLIVAVDDDGCFTG KITDFSGRYVKDADKDIIEAMKAKGRLVKLGTFTHSYPFCWRSDTPLIYRAVPSWFVR VEQLKEQLLENNKQTYWVPDYVKEKRFHNWLENARDWAISRSRFWGTPIPVWISEDGE EVIVMDSVEKLERLSGAKVFDLHRHNIDHITIPSTRGPEFGVLRRIDDVFDCWFESGS MPYAYIHYPFENVELFEKNFPGHFVAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICN GLVLAEDGKKMSKRLKNYPSPMEVINDYGADALRLYLINSPVVRAETLRFKKEGVFGV VKDVFLPWYNAYRFLVQNAKRLEYEGCAPFVPIDLTILQKSSNVLDQWINSATQSLVH FVREEMDGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRTGEEDCRMALSTLYNVLL TACKVMAPFTPFFTEVLYQNMRKVCDGAEESIHYCSFPQEEGKRGERIEESVARMMKI IDLARNIRERHNRPLKTPLREMVVVHKDEDFLDDIAGKLREYVLEELNIRSLVPCNDT LKYASLRAEPDFSVLGKRLGKSMGVVAKEVKAMSQEDILAFEEAGEVTIATHCLKRTD IKVVRDFKRPDGMTDKEMDAVGDGDVLVILDLRPDESLFEAGVAREVVNRIQKLRKKA GLEPTDMVEVYFESLDEDKSVIQQVLNSQESYIRDTIGSPLLASNMMPLHTVVLCEEN FEGISNMSFKISLARPALFFMSNAILALYAGNTKFAQGLQTYLLSRDHSSLKSEFQHG HGKMEVGCIENQPAVEVTLGEHVFLTVGDYYLTIKNGC" mRNA complement(join(190712..190736,190834..191235, 191653..191775,192050..192117,192242..192305, 192699..192840,192967..193055,193517..193580, 193669..193772,193996..194133,194251..194376, 194810..195022,195172..195255,195410..195569, 196191..196324,196596..196685,197278..197436, 197650..197728,198951..199048,199410..199523, 200189..200354,200878..201095,201638..201781, 201966..202031,202123..202886)) /locus_tag="TCM_021556" /product="TRNA synthetase class I (I, L, M and V) family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s02170.1" /inference="similar to AA sequence:ricco:29657.m000469" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc299t12; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g513t5" CDS complement(join(190837..191235,191653..191775, 192050..192117,192242..192305,192699..192840, 192967..193055,193517..193580,193669..193772, 193996..194133,194251..194376,194810..195022, 195172..195255,195410..195569,196191..196324, 196596..196685,197278..197436,197650..197728, 198951..199048,199410..199523,200189..200354, 200878..201095,201638..201781,201966..202031, 202123..202656)) /locus_tag="TCM_021556" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29657.m000469" /codon_start=1 /product="TRNA synthetase class I (I, L, M and V) family protein isoform 2" /protein_id="EOY07019.1" /db_xref="TAIR:AT4G10320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SV89" /translation="MEDVSEGKDFSFPSQEEHILSYWSQIDAFKGQLARTQNLPEYIF YDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVESEIDRKLG INRRDQVLDMGIDKYNEECRSVVTRYVEEWEDIISRTGRWIDFKNDYKTMDLKFMESV WWAFGQLYQKGLIYKGFKVMPYSTGCKTPLSNFEAGENYKLVPDPELMVAFPIVGAPD NAAFVAWTTTPWTLPSNLALCVNANLVYVKARNKYSGKIYVAAESRLSELPTEKPKSN AAKGPSGDSKKSKTKGSSGEKTKDSTADSYEVLDKFSGASLVGTKYEPLFNYFLEFSN AAFRVIADNYVTDDSGTGIVHCAPAFGEDDYRVCIGNQIINKGENLIVAVDDDGCFTG KITDFSGRYVKDADKDIIEAMKAKGRLVKLGTFTHSYPFCWRSDTPLIYRAVPSWFVR VEQLKEQLLENNKQTYWVPDYVKEKRFHNWLENARDWAISRSRFWGTPIPVWISEDGE EVIVMDSVEKLERLSGAKVFDLHRHNIDHITIPSTRGPEFGVLRRIDDVFDCWFESGS MPYAYIHYPFENVELFEKNFPGHFVAEGLDQTRGWFYTLMVLSTALFGKPAFRNLICN GLVLAEDGKKMSKRLKNYPSPMEVINDYGADALRLYLINSPVVRAETLRFKKEGVFGV VKDVFLPWYNAYRFLVQNAKRLEYEGCAPFVPIDLTILQKSSNVLDQWINSATQSLVH FVREEMDGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRTGEEDCRMALSTLYNVLL TACKVMAPFTPFFTEVLYQNMRKVCDGAEESIHYCSFPQEEGKRGERIEESVARMMKI IDLARNIRERHNRPLKTPLREMVVVHKDEDFLDDIAGKLREYVLEELNIRSLVPCNDT LKYASLRAEPDFSVLGKRLGKSMGVVAKEVKAMSQEDILAFEEAGEVTIATHCLKRTD IKVVRDFKRPDGMTDKEMDAVGDGDVLVILDLRPDESLFEAGVAREVVNRIQKLRKKA GLEPTDMVEVYFESLDEDKSVIQQVLNSQESYIRDTIGSPLLASNMMPLHTVSLFSLG LEYLQICSGHALSCFLFRCYPPLPLPKKKDFAPFLNLHYSSYLSLIMLVEFVCLYSIV LLQKNLQVVLCEENFEGISNMSFKISLARPALFFMSNAILALYAG" mobile_element complement(203404..204325) /note="source:CACAO_PIF_E144_scaffold_10 1208 2391" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 204664..207632 /locus_tag="TCM_021557" /note="dbxref CacaoGD:Thecc1EG021557" mRNA join(204664..205258,205978..206054,206191..206252, 206340..206458,206808..206975,207074..207114, 207246..207632) /locus_tag="TCM_021557" /product="Glutathione peroxidase 2" /inference="alignment:exonerate- protein:2:ricco:29657.m000470" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016241t1" /inference="similar to AA sequence:ricco:29657.m000470" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g12887t1" CDS join(205112..205258,205978..206054,206191..206252, 206340..206458,206808..206975,207074..207106) /locus_tag="TCM_021557" /note="dbxref ricco:29657.m000470; paralog of Thecc1EG016241t1" /codon_start=1 /product="Glutathione peroxidase 2" /protein_id="EOY07020.1" /db_xref="TAIR:AT2G43350.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6JAG4" /translation="MMHWFRFTNLVSLVFLGFAFFLYFHIYPSSSHQNMAENAPKSVY EFTVKDIRGNDVSLSEYSGKVLLIVNVASKCGLTHSNYKELNVLYEKYKNQGFEILAF PCNQFAGQEPGTNEHIQEVACTMFKAEFPIFDKVEVNGKNSAPLYKFLKSVKGGYFGD AIKWNFTKFLVDKEGKVVERYAPTTSPLKIEKDIQKLLGSS" mobile_element complement(206018..206082) /note="source:INTACT563_F255_scaffold_10-int 1515 1579" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(207525..210399) /locus_tag="TCM_021558" /note="dbxref CacaoGD:Thecc1EG021558" mRNA complement(join(207525..208180,208305..208376, 208531..208536,208640..210399)) /locus_tag="TCM_021558" /product="Pentatricopeptide repeat superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s06150.1" /inference="similar to AA sequence:Phytozome:POPTR_0017s06150.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1132t7" CDS complement(join(208063..208180,208305..208376, 208531..208536,208640..210276)) /locus_tag="TCM_021558" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein" /protein_id="EOY07021.1" /db_xref="Phytozome:POPTR_0017s06150.1" /db_xref="TAIR:AT5G65560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MY08" /translation="MLRAGRHGGRDLFSNLLKISSCSEFFLHSSPFSSTPRTATNYPL SLTKQLPQVSASKAVSSSAVRSIAALLSAPTVQCKDFDDLLKDYKDKLNSKLVLHILM NYKQLGRVKTLEFFSWAGTQTGFQFDDCVIEYMADFLGRRKLFDDIKCLLLTILSHKG GLSCRVFSICIRFLGRQGRVAEALSLFQEMETTFRCKPDNIVCNNILYVLCKKETSGE LIDVALTIFHRIDVPDTYSYSNILVGLCKFGRLETALEVFHKMHRAGLVPTRSAVNVL IGQLCLLSAKEGAIEKVRVKNVSRPFTILVPNVSSKKGAIEPAVSVFRKAHDSGLLPS AFVIVQLLSELCRLEKLEEAYKILKVVEQRKMSCLEEGYSVLVQAFCERNLVEKASFL FGRTLSLGVKPKLVVYNSMICMLCKAGILDDAERVFKIMNKERCLPDNVTYNALVNAY CEARNWKAAYSLLTEMLGLGLTPNFHTFTLVDKLLRENGQVDLCFKLEGKLETQILLK HCKVGQLEVAYQKLNLMIGKGFHPPVYVRDAFQQAFQNRQFPLTLPRVEGEIWDKPDM LPRITRQELPDGTAQIKMESSRIIAWFLKHQGDAFLELFEAMLD" mobile_element 210526..210607 /note="source:scaffold_8_CACTA_0854 71 148" /mobile_element_type="transposon:TIR/CACTA" gene complement(211214..213057) /locus_tag="TCM_021559" /note="dbxref CacaoGD:Thecc1EG021559" mRNA complement(join(211214..211335,211496..211553, 211758..212044,212465..213002)) /locus_tag="TCM_021559" /product="Signal transducer and transcription activator isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01010739001" /inference="similar to AA sequence:Phytozome:POPTR_0007s02150.4" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g12918t1" mRNA complement(join(211637..212044,212465..213057)) /locus_tag="TCM_021559" /product="Signal transducer and transcription activator isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01010739001" /inference="similar to AA sequence:Phytozome:POPTR_0007s02150.4" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Newbler:10:TSA:cgbaB_g11741t00001; alternateUTRof:Thecc1EG021559t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g12918t1" CDS complement(join(211965..212044,212465..212960)) /locus_tag="TCM_021559" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Signal transducer and transcription activator isoform 1" /protein_id="EOY07022.1" /db_xref="Phytozome:POPTR_0007s02150.4" /db_xref="TAIR:AT2G31560.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HH73" /translation="MVGSSSQTESWVSIRNSIYQAQEEETTTAAAESFVDQERREWTK IDQDDDDDDSSNNEDKIGKKKKKNQVLLEGYVEALDKEDDLTRTKSLTDEDLDELKGC LDLGFGFSYEEIPELCNTLPALELCYSMSQKYLDEHQKSPDPSPDTTAETVSSPIANW KISSPGDHPEDVKARLKFWAQAVACTVKLCS" CDS complement(join(211965..212044,212465..212960)) /locus_tag="TCM_021559" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Signal transducer and transcription activator isoform 1" /protein_id="EOY07023.1" /db_xref="Phytozome:POPTR_0007s02150.4" /db_xref="TAIR:AT2G31560.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HH73" /translation="MVGSSSQTESWVSIRNSIYQAQEEETTTAAAESFVDQERREWTK IDQDDDDDDSSNNEDKIGKKKKKNQVLLEGYVEALDKEDDLTRTKSLTDEDLDELKGC LDLGFGFSYEEIPELCNTLPALELCYSMSQKYLDEHQKSPDPSPDTTAETVSSPIANW KISSPGDHPEDVKARLKFWAQAVACTVKLCS" mobile_element complement(214072..214146) /note="source:INTACT134F_F392_scaffold_2-int 4995 5071" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 214096..214160 /note="source:INTACT289_F14_scaffold_4-int 1364 1428" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(214101..214168) /note="source:CACAO_M_E14113_F106_scaffold_3 13790 13857" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 216018..216105 /note="source:CACAO_M_E12463_F12_scaffold_3 4642 4690" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(216553..221272) /locus_tag="TCM_021561" /note="dbxref CacaoGD:Thecc1EG021561" mRNA complement(join(216553..218170,218494..218679, 218786..218893,219883..220218,220366..220436, 220866..221119)) /locus_tag="TCM_021561" /product="Inositol transporter 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s02140.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020108t1" /inference="similar to AA sequence:Phytozome:POPTR_0007s02140.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g84t1" mRNA complement(join(216750..218170,218494..218679, 218786..218893,219883..220218,220365..220436, 220866..221272)) /locus_tag="TCM_021561" /product="Inositol transporter 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s02140.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020108t1" /inference="similar to AA sequence:Phytozome:POPTR_0007s02140.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g84t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g84t1" CDS complement(join(217520..218170,218494..218679, 218786..218893,219883..220218,220366..220436, 220866..221007)) /locus_tag="TCM_021561" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG020108t1" /codon_start=1 /product="Inositol transporter 1 isoform 1" /protein_id="EOY07024.1" /db_xref="Phytozome:POPTR_0007s02140.1" /db_xref="TAIR:AT2G43330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MY11" /translation="MTLESLPGSSGYLDLHPERRMSYFGNPYILGLTVVAGIGGLLFG YDTGVISGALLYIKDDFEVVNHSSFLQETIVSMALVGAMIGAASGGWINDAYGRKKAT LLADVVFTAGAIVMAVAPDPYILIMGRFLVGLGVGTASVTAPVYIAEASPSEIRGELV STNVLMITGGQFLSYLVNLAFTQVQGTWRWMLGVSAVPAVIQFALMLCLPESPRWLFM KNDEAQAITVLSKIYDLARLEDEIDHLSASLEEERQKKNTVKYMDVFKSKEMRLAFLA GAGLQALQQFTGINTVMYYSPTIVQMAGFTPNQLALLLSLIVAAMNAAGTVLGIYLID HVGRKKLALSSLSGVIISLLILSGAFFAQSSGSSSGLFGWAAVLGLALYIAFFSPGMG PVPWTVNSEIYPEQYRGICGGMSATVNWVSNLIVAQTFLSVAEAAGTASTFLILAGIA VLAVVFVIMFVPETQGLTFVEVEQIWKERAWGSSYNIESLLEQENQS" CDS complement(join(217520..218170,218494..218679, 218786..218893,219883..220218,220365..220403)) /locus_tag="TCM_021561" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG020108t1" /codon_start=1 /product="Inositol transporter 1 isoform 2" /protein_id="EOY07025.1" /db_xref="Phytozome:POPTR_0007s02140.1" /db_xref="TAIR:AT2G43330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MY11" /translation="MTLKWSITVVSYRETIVSMALVGAMIGAASGGWINDAYGRKKAT LLADVVFTAGAIVMAVAPDPYILIMGRFLVGLGVGTASVTAPVYIAEASPSEIRGELV STNVLMITGGQFLSYLVNLAFTQVQGTWRWMLGVSAVPAVIQFALMLCLPESPRWLFM KNDEAQAITVLSKIYDLARLEDEIDHLSASLEEERQKKNTVKYMDVFKSKEMRLAFLA GAGLQALQQFTGINTVMYYSPTIVQMAGFTPNQLALLLSLIVAAMNAAGTVLGIYLID HVGRKKLALSSLSGVIISLLILSGAFFAQSSGSSSGLFGWAAVLGLALYIAFFSPGMG PVPWTVNSEIYPEQYRGICGGMSATVNWVSNLIVAQTFLSVAEAAGTASTFLILAGIA VLAVVFVIMFVPETQGLTFVEVEQIWKERAWGSSYNIESLLEQENQS" gene 221753..226259 /locus_tag="TCM_021562" /note="dbxref CacaoGD:Thecc1EG021562" mRNA join(221753..221947,222876..224327,225368..226259) /locus_tag="TCM_021562" /product="Pentatricopeptide repeat superfamily protein, putative" /inference="alignment:exonerate-protein:2:frave:gene13822" /inference="similar to AA sequence:Phytozome:POPTR_0006s10700.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc917t1" CDS join(221807..221947,222876..224327,225368..225403) /locus_tag="TCM_021562" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein, putative" /protein_id="EOY07026.1" /db_xref="Phytozome:POPTR_0006s10700.1" /db_xref="TAIR:AT2G38420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HD94" /translation="MRYHSGACIYDRCVIRFEVDLLRDRSNFSFQRLKSELAWSDLAW PLKEMVRCRNLFLRKHRRWPHFAYKTKWNQTFTQKQAMLSFKQLVAVAQDNLPPPILL STLVRSFSLYNVHPTPQAYHFLIKTLIQNLHFNHIPSVLHHLEHVEKFQTPEYIFADL ITTYGIANRIQDAVDIFYRIPKFRCVPSAYSLNSLLALLCRNQYSLKLVPQVLLKSLL MNIRVEESTLRILVSALCRMNKVSYAIDILQRMIDEGLGVNDKVCSFILSSICAKADL DGEDVMGLWRELGKLGFCPAMSDYNCLIRFLVKKGRGLDALDFLNQMKSVGIKPGIVS YTMALNGVIAEGDYMLADELFDELLMLGLVPDVYTYNAYIDALCKQNKVEEGIKMVAC MEELRCKPNVLTYNMLLEAICKVGEISRAMELVKEMKYKGIEMNLVSYTVIIDGLVSK GEILEAHGLVEEVLHKCFCHQSLAFDEVICGLCQRGLVCEALELLRKMVAKNVSPGAR GWEALLLSSESKINFANTTLIESAIRPQPLGLAT" mobile_element complement(226313..226375) /note="source:CACAO_M_S_E33129_F347_scaffold_4 454 515" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(227131..227184) /note="source:scaffold_4_CACTA_0491 531 570" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(229781..230267) /note="source:INTACT639F_F363_scaffold_5-int 8107 8573" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(229907..230334) /note="source:CACAO_on_E18_scaffold_1 715 1178" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 230059..231005 /note="source:CACAO_on_E683_scaffold_9 1323 2306" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(231077..231132) /note="source:CACAO_M_E22886_F96_scaffold_3 703 745" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 231174..233384 /locus_tag="TCM_021564" /note="dbxref CacaoGD:Thecc1EG021564" mRNA join(231174..231446,233095..233384) /locus_tag="TCM_021564" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.47 coverage" mobile_element complement(231816..231933) /note="source:scaffold_3_CACTA_0382 1860 1982" /mobile_element_type="transposon:TIR/CACTA" mobile_element 231830..231986 /note="source:CACAO_M_S_E14849_F156_scaffold_2 702 800" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(231933..232004) /note="source:CACAO_PIF_E144_scaffold_10 5993 6056" /mobile_element_type="transposon:TIR/PIF-Harbinger" CDS 233098..233328 /locus_tag="TCM_021564" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07027.1" /translation="MSLHPQHILTQHHQIMHVHFPVSHNDKSTFNCDQQQFECVIIKI PISFFPFRIRFTRLMLQLNDRATWNLGYYVEG" gene 235294..245318 /locus_tag="TCM_021565" /note="dbxref CacaoGD:Thecc1EG021565" mRNA join(235294..236069,236165..236236,236401..236444, 236526..236637,236776..236847,237137..237199, 237842..237919,238024..238116,238528..238647, 239168..239254,239422..239631,239720..239767, 240182..240436,240633..240739,241017..241261, 241678..241746,241842..241906,242037..242206, 242363..242441,242941..243196,243432..243477, 243710..243818,244057..244119,244296..245318) /locus_tag="TCM_021565" /product="D-alanine--D-alanine ligase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01030240001" /inference="similar to AA sequence:Phytozome:POPTR_0006s10670.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1493t7" mRNA join(235294..236069,236165..236236,236401..236444, 236526..236637,236776..236847,237137..237199, 237842..237919,238024..238116,238528..238647, 239168..239254,239422..239631,239720..239767, 240182..240436,240633..240739,241017..241261, 241678..241746,241842..241906,242037..242572) /locus_tag="TCM_021565" /product="D-alanine--D-alanine ligase family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01030240001" /inference="similar to AA sequence:Phytozome:POPTR_0006s10670.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:PASA:2:TSA:puevd3b020856t1a3; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1493t7" mRNA join(235536..236069,236165..236236,236401..236444, 236526..236637,236776..236847,237137..237199, 237842..237919,238024..238116,238528..238647, 239168..239254,239422..239631,239720..239767, 240182..240436,240633..240739,241017..241261, 241678..241746,241842..241906,242037..242206, 242363..242441,242941..243196,243432..243477, 243710..243818,243961..244080) /locus_tag="TCM_021565" /product="D-alanine--D-alanine ligase family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01030240001" /inference="similar to AA sequence:Phytozome:POPTR_0006s10670.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1493t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1493t7" CDS join(235737..236069,236165..236236,236401..236444, 236526..236637,236776..236847,237137..237199, 237842..237919,238024..238116,238528..238647, 239168..239254,239422..239631,239720..239767, 240182..240436,240633..240739,241017..241261, 241678..241746,241842..241906,242037..242206, 242363..242441,242941..243196,243432..243477, 243710..243818,244057..244119,244296..244376) /locus_tag="TCM_021565" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="D-alanine--D-alanine ligase family protein isoform 1" /protein_id="EOY07028.1" /db_xref="Phytozome:POPTR_0006s10670.1" /db_xref="TAIR:AT3G08840.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IYI8" /translation="MASLSCGSNLALLLRVANPNWNDPSSSLPSSSNLIGKFGPKSVT TACCRSSSSSKAVGVGVTRATAQVADALVVDKEEKSQVLRVGVICGGPSAERGISLNS ARSVLDHIQGEDLRVSCYYIDSHLNAYAISSAQVYSNTPSDFDFKLESLAQGFRSLSE FAEHLAASVDIVFPVIHGRFGEDGGIQELLEEHNVPFVGTGSKECCQAFDKYDASLSL SKHGFVTIPSFLVQGSEVNESELSKWFASNQLDFNSGKVVVKPTRAGSSIGVTVAYGV TDSLKKAKEIISQGIDDRVLVELFLEGGSEFTAIVLDVGHGFDCQPVVLLPTEVELQF HGSGDVRERDAIFNYRRKYLPTQQVAYHTPPRFPIDIIKSIREGASLLFRRLGLRDFA RIDGWFLPSTTKALSSSEDKYGMTELGTILFTDINLISGMEQTSFLFQQASKVGFSHS NILRSIIHRACLRFPELATYSSESGQLRRTSKCLKPTETSKGLEGIHKVFVIFGGDTS ERQVSLMSGTNVWLNLQAFDDLDVTPCLLASSIDHSSTTDSDKKESDVSSREVWLLPY SLVLRHTTEEVLDACMEAIEPARAALTSHLRNQVMNELMEGLKKHGWFMGFDITDQQP VRYSLKEWIKFAKEVEATVFISVHGGIGEDGTLQSLLEAEEIPYSGPGVKASKICMDK VATSLALNHLGDMGVLTINKDVKRKKELLKMPILQTWHDLTSKLQCETLCIKPARDGC STGVARLCCAEDLAVYAKAVDDCLLRIPPNSFSKAHGMIEMPNPPPELLIFEPFVETD EIVVSSKTATANSQHLLWKGHSRWVEVTVGVIGKRGSMHSLSPSITVKETGDILSLEE KFQGGTGINLTPPPVSIMSNEVLGRCKQRIELIANTLQLEGFSRMDAFVNVDSGEVLV IEVNTVPGMTPSTVLIHQALAEQPPMYPHQFFRSLLDLASERVL" CDS join(235737..236069,236165..236236,236401..236444, 236526..236637,236776..236847,237137..237199, 237842..237919,238024..238116,238528..238647, 239168..239254,239422..239631,239720..239767, 240182..240436,240633..240739,241017..241261, 241678..241746,241842..241906,242037..242206, 242363..242441,242941..243196,243432..243477, 243710..243818,243961..243984) /locus_tag="TCM_021565" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="D-alanine--D-alanine ligase family protein isoform 3" /protein_id="EOY07030.1" /db_xref="Phytozome:POPTR_0006s10670.1" /db_xref="TAIR:AT3G08840.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IYI8" /translation="MASLSCGSNLALLLRVANPNWNDPSSSLPSSSNLIGKFGPKSVT TACCRSSSSSKAVGVGVTRATAQVADALVVDKEEKSQVLRVGVICGGPSAERGISLNS ARSVLDHIQGEDLRVSCYYIDSHLNAYAISSAQVYSNTPSDFDFKLESLAQGFRSLSE FAEHLAASVDIVFPVIHGRFGEDGGIQELLEEHNVPFVGTGSKECCQAFDKYDASLSL SKHGFVTIPSFLVQGSEVNESELSKWFASNQLDFNSGKVVVKPTRAGSSIGVTVAYGV TDSLKKAKEIISQGIDDRVLVELFLEGGSEFTAIVLDVGHGFDCQPVVLLPTEVELQF HGSGDVRERDAIFNYRRKYLPTQQVAYHTPPRFPIDIIKSIREGASLLFRRLGLRDFA RIDGWFLPSTTKALSSSEDKYGMTELGTILFTDINLISGMEQTSFLFQQASKVGFSHS NILRSIIHRACLRFPELATYSSESGQLRRTSKCLKPTETSKGLEGIHKVFVIFGGDTS ERQVSLMSGTNVWLNLQAFDDLDVTPCLLASSIDHSSTTDSDKKESDVSSREVWLLPY SLVLRHTTEEVLDACMEAIEPARAALTSHLRNQVMNELMEGLKKHGWFMGFDITDQQP VRYSLKEWIKFAKEVEATVFISVHGGIGEDGTLQSLLEAEEIPYSGPGVKASKICMDK VATSLALNHLGDMGVLTINKDVKRKKELLKMPILQTWHDLTSKLQCETLCIKPARDGC STGVARLCCAEDLAVYAKAVDDCLLRIPPNSFSKAHGMIEMPNPPPELLIFEPFVETD EIVVSSKTATANSQHLLWKGHSRWVEVTVGVIGKRGSMHSLSPSITVKETGDILSLEE KFQGGTGINLTPPPVSIMSNEVLGRCKQRIELIANTLQLEGFSRMDAFVNVDSGEIVC KIKW" CDS join(235737..236069,236165..236236,236401..236444, 236526..236637,236776..236847,237137..237199, 237842..237919,238024..238116,238528..238647, 239168..239254,239422..239631,239720..239767, 240182..240436,240633..240739,241017..241261, 241678..241746,241842..241906,242037..242210) /locus_tag="TCM_021565" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="D-alanine--D-alanine ligase family protein isoform 4" /protein_id="EOY07031.1" /db_xref="Phytozome:POPTR_0006s10670.1" /db_xref="TAIR:AT3G08840.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GXZ7" /translation="MASLSCGSNLALLLRVANPNWNDPSSSLPSSSNLIGKFGPKSVT TACCRSSSSSKAVGVGVTRATAQVADALVVDKEEKSQVLRVGVICGGPSAERGISLNS ARSVLDHIQGEDLRVSCYYIDSHLNAYAISSAQVYSNTPSDFDFKLESLAQGFRSLSE FAEHLAASVDIVFPVIHGRFGEDGGIQELLEEHNVPFVGTGSKECCQAFDKYDASLSL SKHGFVTIPSFLVQGSEVNESELSKWFASNQLDFNSGKVVVKPTRAGSSIGVTVAYGV TDSLKKAKEIISQGIDDRVLVELFLEGGSEFTAIVLDVGHGFDCQPVVLLPTEVELQF HGSGDVRERDAIFNYRRKYLPTQQVAYHTPPRFPIDIIKSIREGASLLFRRLGLRDFA RIDGWFLPSTTKALSSSEDKYGMTELGTILFTDINLISGMEQTSFLFQQASKVGFSHS NILRSIIHRACLRFPELATYSSESGQLRRTSKCLKPTETSKGLEGIHKVFVIFGGDTS ERQVSLMSGTNVWLNLQAFDDLDVTPCLLASSIDHSSTTDSDKKESDVSSREVWLLPY SLVLRHTTEEVLDACMEAIEPARAALTSHLRNQVMNELMEGLKKHGWFMGFDITDQQP VRYSLKEWIKFAKEVEATVFISVHGGIGEDGTLQSLLEAEEIPYSGPGVKASKICMDK VATSLALNHLGDMGVLTINKDVKRKKELLKMPILQTWHDLTSKLQCETLCIKPARDGC STGVARLW" mRNA join(235784..236069,236165..236236,236401..236444, 236526..236637,236776..236902,237137..237199, 237842..237919,238024..238116,238528..238647, 239168..239254,239422..239631,239720..239767, 240182..240436,240633..240739,241017..241261, 241678..241746,241842..241906,242037..242206, 242363..242441,242941..243196,243432..243477, 243710..243818,244057..244120,244296..244611) /locus_tag="TCM_021565" /product="D-alanine--D-alanine ligase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01030240001" /inference="similar to AA sequence:Phytozome:POPTR_0006s10670.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g88t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1493t7" CDS join(236606..236637,236776..236902,237137..237199, 237842..237919,238024..238116,238528..238647, 239168..239254,239422..239631,239720..239767, 240182..240436,240633..240739,241017..241261, 241678..241746,241842..241906,242037..242206, 242363..242441,242941..243196,243432..243477, 243710..243818,244057..244120,244296..244387) /locus_tag="TCM_021565" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="D-alanine--D-alanine ligase family protein isoform 2" /protein_id="EOY07029.1" /db_xref="Phytozome:POPTR_0006s10670.1" /db_xref="TAIR:AT3G08840.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IYI8" /translation="MVGLVKMVAFRSYWKNIMFHLLAQDPRSVVKHLTRFRNFISHII MTSLFILINYDASLSLSKHGFVTIPSFLVQGSEVNESELSKWFASNQLDFNSGKVVVK PTRAGSSIGVTVAYGVTDSLKKAKEIISQGIDDRVLVELFLEGGSEFTAIVLDVGHGF DCQPVVLLPTEVELQFHGSGDVRERDAIFNYRRKYLPTQQVAYHTPPRFPIDIIKSIR EGASLLFRRLGLRDFARIDGWFLPSTTKALSSSEDKYGMTELGTILFTDINLISGMEQ TSFLFQQASKVGFSHSNILRSIIHRACLRFPELATYSSESGQLRRTSKCLKPTETSKG LEGIHKVFVIFGGDTSERQVSLMSGTNVWLNLQAFDDLDVTPCLLASSIDHSSTTDSD KKESDVSSREVWLLPYSLVLRHTTEEVLDACMEAIEPARAALTSHLRNQVMNELMEGL KKHGWFMGFDITDQQPVRYSLKEWIKFAKEVEATVFISVHGGIGEDGTLQSLLEAEEI PYSGPGVKASKICMDKVATSLALNHLGDMGVLTINKDVKRKKELLKMPILQTWHDLTS KLQCETLCIKPARDGCSTGVARLCCAEDLAVYAKAVDDCLLRIPPNSFSKAHGMIEMP NPPPELLIFEPFVETDEIVVSSKTATANSQHLLWKGHSRWVEVTVGVIGKRGSMHSLS PSITVKETGDILSLEEKFQGGTGINLTPPPVSIMSNEVLGRCKQRIELIANTLQLEGF SRMDAFVNVDSGEVLVIEVNTVPGMTPSTVLIHQGTGRAASHVSSPVLPFTSRFGVRE SAVKVV" gene 245462..246200 /locus_tag="TCM_021566" /note="dbxref CacaoGD:Thecc1EG021566" mRNA 245462..246200 /locus_tag="TCM_021566" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s13730.1" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g12905t00001" CDS 245625..246023 /locus_tag="TCM_021566" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07032.1" /translation="MASTRPGKERRAKSLGWLCHRVWLSCPISQPCGFTSRTVSHVLK YSLNCVIRPSFKVHTWTQYTCAPSQPSAITQSPTTSMLLGSNLNSVWLDSPVSTRIIC WHRGGPWNHHSRSLASSLTTVLVPPCASAL" gene complement(250268..251160) /locus_tag="TCM_021567" /note="dbxref CacaoGD:Thecc1EG021567" mRNA complement(250268..251160) /locus_tag="TCM_021567" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s13710.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s13710.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g71t1" CDS complement(250465..251085) /locus_tag="TCM_021567" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07033.1" /db_xref="Phytozome:POPTR_0016s13710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AGY2" /translation="MEKMGSQSSSRKTIRRRSHTRKIAQGSVINMAEARREIAHALHL HRSSSSSSSSSSSTSTKTQSYVAQEREPWMLGNTTKPTLASSYCCYSLAEALPMPVPD PVWSTTEPSVPAAPSGSEAMEFFEWGENEASSYTWWLAFLRALDVNNVQKTEHPFADN VMKENSMVLEKQASSEIEKATTFVGASDQNASLDEWLMFPTTEDDS" mobile_element complement(252776..252863) /note="source:CACAO_M_E3248_F5_scaffold_1 3644 3726" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 252777..252853 /note="source:INTACT296_F13_scaffold_9-int 13191 13268" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 252854..252882 /note="source:CACAO_M_S_E101631_F270_scaffold_9 2106 2207" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(253483..253879) /locus_tag="TCM_021568" /note="dbxref CacaoGD:Thecc1EG021568" mRNA complement(253483..253879) /locus_tag="TCM_021568" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021572t1" /inference="similar to AA sequence:ricco:28092.m000077" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.22 coverage" CDS complement(253507..253716) /locus_tag="TCM_021568" /note="dbxref ricco:28092.m000077; paralog of Thecc1EG021572t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07034.1" /translation="MNWESPFEQEVEKMEEFVRGLASVKGLTLRAQDIAEAALYLASD ESKYVSGHNLGVDGGVTTSRNCDGL" gene complement(257269..258239) /locus_tag="TCM_021570" /note="dbxref CacaoGD:Thecc1EG021570" mRNA complement(257269..258239) /locus_tag="TCM_021570" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013989t1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.25 coverage" CDS complement(257668..257898) /locus_tag="TCM_021570" /note="paralog of Thecc1EG013989t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07035.1" /translation="MKMKEEESIQEYTDKLLKMVNQLKMLGHEVTDQKIVNKILVSIL DNFESKVTSLEDYKDLTRILVKELISTLLAFE" mobile_element 258922..259009 /note="source:scaffold_4_CACTA_0505 18591 18677" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(258984..259365) /note="source:INTACT1604F_F75_scaffold_10-int 4629 5024" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(259365..260453) /note="source:INTACT444_F216_scaffold_4-int 1799 2884" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(260597..260951) /note="source:INTACT444_F216_scaffold_4-int 1382 1744" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(261147..262099) /locus_tag="TCM_021571" /note="dbxref CacaoGD:Thecc1EG021571" mRNA complement(261147..262099) /locus_tag="TCM_021571" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS complement(261443..261715) /locus_tag="TCM_021571" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07036.1" /translation="MPPIGEPTVGESRPLGSSSRQLERADRWGATIVGWGKPIVRGTT PPVGESKPSGSSSRWLGKADRWVVAGGLVERRERIWVVKRENGEGK" mobile_element complement(261882..262231) /note="source:CACAO_Mutator_E1149_scaffold_5 4093 4489" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(262230..262683) /note="source:INTACT1604F_F75_scaffold_10-int 4221 4655" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(262693..262770) /note="source:INTACT1604F_F75_scaffold_10-int 5329 5417" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 262771..263594 /note="source:CACAO_M_S_E51990_F2_scaffold_5 1 824" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 264811..264880 /note="source:CACAO_M_E44848_F172_scaffold_6 1882 1959" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(264821..264839) /note="source:CACAO_M_E57763_F96_scaffold_9 739 773" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(264840..264899) /note="source:CACAO_Again_on_E207_scaffold_9 1008 1067" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(264900..264911) /note="source:CACAO_M_E57763_F96_scaffold_9 713 738" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(265401..267578) /locus_tag="TCM_021572" /note="dbxref CacaoGD:Thecc1EG021572" mRNA complement(join(265401..266332,266855..267411, 267494..267578)) /locus_tag="TCM_021572" /product="NAD(P)-binding Rossmann-fold superfamily protein" /inference="alignment:exonerate- protein:2:ricco:28092.m000077" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021573t1" /inference="similar to AA sequence:ricco:28092.m000077" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g04354t00001" CDS complement(join(265495..266332,266855..266937)) /locus_tag="TCM_021572" /note="dbxref ricco:28092.m000077; paralog of Thecc1EG021573t1" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein" /protein_id="EOY07037.1" /db_xref="TAIR:AT3G51680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P50160" /translation="MPAQLMPEKTLQCLHVLARDNNPPSSKRLEGKIAIVTGGARGIG AATVRLFAIHGAKVVIADVEDKAGTALADSLDPWVTFVHCDVSLEGDIENLIDSIILR YGRIDILFNNAGVLGDQKKHKSIVDFDIEEFDRVMRVNVRGVALGMKHAARVMIPKGG GCIISTASVAGVMGGLGPHAYTASKHAIVGLTKNTACELGRYGIRVNCISPFGVATSM LVNAWRSSAASDDEEEGERMNWGSPFEQEVEKMEEFVRGLASLKGPTLRAKDIAEAAL YLASDESKYVSGHNLVVDGGVTTSRNCVGL" gene complement(270004..271689) /locus_tag="TCM_021573" /note="dbxref CacaoGD:Thecc1EG021573" mRNA complement(join(270004..271140,271505..271689)) /locus_tag="TCM_021573" /product="NAD(P)-binding Rossmann-fold superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s10660.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021572t1" /inference="similar to AA sequence:ricco:28092.m000077" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaB_g11222t00001" CDS complement(join(270312..271140,271505..271590)) /locus_tag="TCM_021573" /note="dbxref ricco:28092.m000077; paralog of Thecc1EG021572t1" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein" /protein_id="EOY07038.1" /db_xref="TAIR:AT3G51680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P50160" /translation="MPAQVMPEKTLQSLHVLGRENNSSPHPKRLEGKIAIVTGGARGI GEATVRLFARHGAKVVIADLEDTLGAALANSLSPSVTFVHCDVRLEEDIENLINSTIS RYGRLDILFNNAGVLGNQKKHKSIVDFDVDEFDNVMRVNVRGMALGIKHAARAMIPRG GGCIISTASVAGVMGGLGPHAYTASKHAIVGLTKNTACELGRYGIRVNCISPFGVATS MLVNAWRSHDDDEEEDSINFGIPCQQETEKMEEFVRGLANLKGPTLRAKDIAEAALYL ASDESKYVSGHNLVVDGGVTTSRNCVGL" mobile_element 271634..271670 /note="source:scaffold_5_CACTA_0580 13320 13356" /mobile_element_type="transposon:TIR/CACTA" gene complement(272603..273223) /locus_tag="TCM_021575" /note="dbxref CacaoGD:Thecc1EG021575" mRNA complement(join(272603..272797,272974..273223)) /locus_tag="TCM_021575" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc5989t2" CDS complement(join(272645..272797,272974..273102)) /locus_tag="TCM_021575" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07039.1" /translation="MASTIDKIIIKITPDNKLKMKIKVGKQSRELIMQLLSTSNTRQV PCLFSKIFLIRYGTRTHIFLLKLASLAYRLQNMGRYIVYITNDLSDLSA" gene 277764..286416 /locus_tag="TCM_021577" /note="dbxref CacaoGD:Thecc1EG021577" mRNA join(277764..277814,278240..278918,279575..279738, 280365..280488,280584..280713,281544..281605, 281720..285251,285367..285453,285583..285687, 285774..285908,286020..286337) /locus_tag="TCM_021577" /product="SCAR, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29820.m001037" /inference="similar to AA sequence:ricco:29820.m001037" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc885t11" mRNA join(278551..278918,279575..279738,280365..280488, 280584..280713,281544..281605,281720..285251, 285367..285453,285583..285907) /locus_tag="TCM_021577" /product="SCAR, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:29820.m001037" /inference="similar to AA sequence:ricco:29820.m001037" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc885t5; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc885t11" CDS join(278764..278918,279575..279738,280365..280488, 280584..280713,281544..281605,281720..285251, 285367..285453,285583..285687,285774..285830) /locus_tag="TCM_021577" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29820.m001037" /codon_start=1 /product="SCAR, putative isoform 1" /protein_id="EOY07040.1" /db_xref="TAIR:AT2G38440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SL38" /translation="MPLTRYQIRNEYSLADPELYRAADKDDPEALLEGVAMAGLVGVL RQLGDLAEFAAEIFHDLHEEVMATAARGHGLTVRVQQLEAEFPSIEKAFLSQTNHSLF FTNAGVDWHPNLRTEHNLITRGDLPRCVLDSYEECRGPPRLFLLDKFDVAGAGACLKR YTDPSFFKAESAFPEIAAAEVQREKKSRKLKKKGSRWRNGETPEIALTSHAKLHQLFL EERIENAYKDPSRLVKLKRRQLNESPLEIKSGKSYMEKFLESPSPEHKAVYETSGTPP PLELTLDNSSDSGLEILEISTVSPVKNTSQGKDNSSSSPDAQEIVLKPSVEELNREVI DREIVKVPERTADFTDGIPPSFHKAAIEKDIIVDGEGRKGCSIDGDHSDDMTSEVDNY MDALATMESEMDTDNEYRPKNDIGFLNIGKYRTDSDANEEKLEVQVHSSDSQSVGISS VSDDGNSSFKKERSSFSYSDTVDNLAEDMPSDGEIAAKEFPSNKNCAAEIVEAPSIHL PACSEMQCSSSDEAWPSKDTSFGECKLPDLGEESHSSCLEELNPTHVLLDPKTSSMAV SLPEPEVPYVDVKTNSDLSEMDGGKYLADSSEKQDVTLITLSAESHQVDELDSEDTNV SSDALPHLSNILQLAPEKRSSNDPFDEVLETDFAGETCAENSVNQMIGSPNSVISSAE EQLPCSTFAEVERSSEGLDVMRPVNLVSEVNDATLEAGVKSECMAPMVGTSQTCGFNE QKCSDGINDDPQLEADSTEIGASYSEQKQNADQLFDVAEGEGTGEITCRVSMVGGDAI ACDLPSNSADNLDLNNHVGLDDLATETVHAETMAVSTAACGSADLDDDVDNTTSESSN LICSPSKNQKNLQEPLSGAGDLCTEGLESDEVISQECLVESEAQEETNQAEGAPADLE STSCKLVSYDNSNLEDDIHDPSLAEPAKNSLNFIDLTTVPASSELSDQESESKYLSHL IESRADVVSSPTRCLSEKETSFEQSLDLHTSQHDMGSLQMVEDSSNSLNLLSNQIESL NHINQERCLQTASEHSAEGSSSQPSVEFSQQSGRQDKQEMYPSDSTQPAVVLLHGATK VSMEEMPPLPPLPPMQWRIGRAQHASPASQRELVEHGQGSFSMIPQYAIEQKAQFGLS ALESRNPFLPLVKGEERYGHVSDQFATDFMQPSPFPMDPPTMGNSANSQYDGIHLDRT HPNPFLTLPIISNESHEYGSAAMEDDRVESSFSFLSMPVTEHATSRHIPESLHEKTTH APNQFVLDTGLEGGAFKHPKQNSEGEHGNPPDIFVASSTKREEQSPTKVAEELPTKVE EQFPTTVEEQHGLAAPEGETSQTSNTTVQHDLSTSEGEANGNANGNPNVKLPRPRNPL IDAVAAHDKSKLRKVTERVRPPMIPKVDERDSLLEQIRTKSFNLKPAAVTRPSIQGPK TNLRVAAILEKANAIRQALAGSDEDDGDEDDWSDC" CDS join(278764..278918,279575..279738,280365..280488, 280584..280713,281544..281605,281720..285251, 285367..285453,285583..285738) /locus_tag="TCM_021577" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29820.m001037" /codon_start=1 /product="SCAR, putative isoform 3" /protein_id="EOY07042.1" /db_xref="TAIR:AT2G38440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SL38" /translation="MPLTRYQIRNEYSLADPELYRAADKDDPEALLEGVAMAGLVGVL RQLGDLAEFAAEIFHDLHEEVMATAARGHGLTVRVQQLEAEFPSIEKAFLSQTNHSLF FTNAGVDWHPNLRTEHNLITRGDLPRCVLDSYEECRGPPRLFLLDKFDVAGAGACLKR YTDPSFFKAESAFPEIAAAEVQREKKSRKLKKKGSRWRNGETPEIALTSHAKLHQLFL EERIENAYKDPSRLVKLKRRQLNESPLEIKSGKSYMEKFLESPSPEHKAVYETSGTPP PLELTLDNSSDSGLEILEISTVSPVKNTSQGKDNSSSSPDAQEIVLKPSVEELNREVI DREIVKVPERTADFTDGIPPSFHKAAIEKDIIVDGEGRKGCSIDGDHSDDMTSEVDNY MDALATMESEMDTDNEYRPKNDIGFLNIGKYRTDSDANEEKLEVQVHSSDSQSVGISS VSDDGNSSFKKERSSFSYSDTVDNLAEDMPSDGEIAAKEFPSNKNCAAEIVEAPSIHL PACSEMQCSSSDEAWPSKDTSFGECKLPDLGEESHSSCLEELNPTHVLLDPKTSSMAV SLPEPEVPYVDVKTNSDLSEMDGGKYLADSSEKQDVTLITLSAESHQVDELDSEDTNV SSDALPHLSNILQLAPEKRSSNDPFDEVLETDFAGETCAENSVNQMIGSPNSVISSAE EQLPCSTFAEVERSSEGLDVMRPVNLVSEVNDATLEAGVKSECMAPMVGTSQTCGFNE QKCSDGINDDPQLEADSTEIGASYSEQKQNADQLFDVAEGEGTGEITCRVSMVGGDAI ACDLPSNSADNLDLNNHVGLDDLATETVHAETMAVSTAACGSADLDDDVDNTTSESSN LICSPSKNQKNLQEPLSGAGDLCTEGLESDEVISQECLVESEAQEETNQAEGAPADLE STSCKLVSYDNSNLEDDIHDPSLAEPAKNSLNFIDLTTVPASSELSDQESESKYLSHL IESRADVVSSPTRCLSEKETSFEQSLDLHTSQHDMGSLQMVEDSSNSLNLLSNQIESL NHINQERCLQTASEHSAEGSSSQPSVEFSQQSGRQDKQEMYPSDSTQPAVVLLHGATK VSMEEMPPLPPLPPMQWRIGRAQHASPASQRELVEHGQGSFSMIPQYAIEQKAQFGLS ALESRNPFLPLVKGEERYGHVSDQFATDFMQPSPFPMDPPTMGNSANSQYDGIHLDRT HPNPFLTLPIISNESHEYGSAAMEDDRVESSFSFLSMPVTEHATSRHIPESLHEKTTH APNQFVLDTGLEGGAFKHPKQNSEGEHGNPPDIFVASSTKREEQSPTKVAEELPTKVE EQFPTTVEEQHGLAAPEGETSQTSNTTVQHDLSTSEGEANGNANGNPNVKLPRPRNPL IDAVAAHDKSKLRKVTERVRPPMIPKVDERDSLLEQIRTKSFNLKPAAVTRPSIQGPK TNLRVAAILEKANAIRQVSIYPYLSLSLSLSLF" mRNA join(278895..278918,279575..279738,280365..280488, 280584..280713,281544..281605,281720..285251, 285367..285453,285583..285687,285774..285856, 286020..286416) /locus_tag="TCM_021577" /product="SCAR, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:29820.m001037" /inference="similar to AA sequence:ricco:29820.m001037" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc804t7; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc885t11" CDS join(279615..279738,280365..280488,280584..280713, 281544..281605,281720..285251,285367..285453, 285583..285687,285774..285830) /locus_tag="TCM_021577" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29820.m001037" /codon_start=1 /product="SCAR, putative isoform 2" /protein_id="EOY07041.1" /db_xref="TAIR:AT2G38440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SL38" /translation="MATAARGHGLTVRVQQLEAEFPSIEKAFLSQTNHSLFFTNAGVD WHPNLRTEHNLITRGDLPRCVLDSYEECRGPPRLFLLDKFDVAGAGACLKRYTDPSFF KAESAFPEIAAAEVQREKKSRKLKKKGSRWRNGETPEIALTSHAKLHQLFLEERIENA YKDPSRLVKLKRRQLNESPLEIKSGKSYMEKFLESPSPEHKAVYETSGTPPPLELTLD NSSDSGLEILEISTVSPVKNTSQGKDNSSSSPDAQEIVLKPSVEELNREVIDREIVKV PERTADFTDGIPPSFHKAAIEKDIIVDGEGRKGCSIDGDHSDDMTSEVDNYMDALATM ESEMDTDNEYRPKNDIGFLNIGKYRTDSDANEEKLEVQVHSSDSQSVGISSVSDDGNS SFKKERSSFSYSDTVDNLAEDMPSDGEIAAKEFPSNKNCAAEIVEAPSIHLPACSEMQ CSSSDEAWPSKDTSFGECKLPDLGEESHSSCLEELNPTHVLLDPKTSSMAVSLPEPEV PYVDVKTNSDLSEMDGGKYLADSSEKQDVTLITLSAESHQVDELDSEDTNVSSDALPH LSNILQLAPEKRSSNDPFDEVLETDFAGETCAENSVNQMIGSPNSVISSAEEQLPCST FAEVERSSEGLDVMRPVNLVSEVNDATLEAGVKSECMAPMVGTSQTCGFNEQKCSDGI NDDPQLEADSTEIGASYSEQKQNADQLFDVAEGEGTGEITCRVSMVGGDAIACDLPSN SADNLDLNNHVGLDDLATETVHAETMAVSTAACGSADLDDDVDNTTSESSNLICSPSK NQKNLQEPLSGAGDLCTEGLESDEVISQECLVESEAQEETNQAEGAPADLESTSCKLV SYDNSNLEDDIHDPSLAEPAKNSLNFIDLTTVPASSELSDQESESKYLSHLIESRADV VSSPTRCLSEKETSFEQSLDLHTSQHDMGSLQMVEDSSNSLNLLSNQIESLNHINQER CLQTASEHSAEGSSSQPSVEFSQQSGRQDKQEMYPSDSTQPAVVLLHGATKVSMEEMP PLPPLPPMQWRIGRAQHASPASQRELVEHGQGSFSMIPQYAIEQKAQFGLSALESRNP FLPLVKGEERYGHVSDQFATDFMQPSPFPMDPPTMGNSANSQYDGIHLDRTHPNPFLT LPIISNESHEYGSAAMEDDRVESSFSFLSMPVTEHATSRHIPESLHEKTTHAPNQFVL DTGLEGGAFKHPKQNSEGEHGNPPDIFVASSTKREEQSPTKVAEELPTKVEEQFPTTV EEQHGLAAPEGETSQTSNTTVQHDLSTSEGEANGNANGNPNVKLPRPRNPLIDAVAAH DKSKLRKVTERVRPPMIPKVDERDSLLEQIRTKSFNLKPAAVTRPSIQGPKTNLRVAA ILEKANAIRQALAGSDEDDGDEDDWSDC" mRNA join(281580..281605,281720..285251,285367..285687, 285774..286416) /locus_tag="TCM_021577" /product="SCAR, putative isoform 5" /inference="alignment:exonerate- protein:2:ricco:29820.m001037" /inference="similar to AA sequence:ricco:29820.m001037" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc804t8; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc885t11" mRNA join(281580..285251,285367..285453,285583..285687, 285774..285907) /locus_tag="TCM_021577" /product="SCAR, putative isoform 4" /inference="alignment:exonerate- protein:2:ricco:29820.m001037" /inference="similar to AA sequence:ricco:29820.m001037" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc885t6; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc885t11" CDS join(281844..285251,285367..285687,285774..285830) /locus_tag="TCM_021577" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:29820.m001037" /codon_start=1 /product="SCAR, putative isoform 5" /protein_id="EOY07044.1" /db_xref="TAIR:AT2G38440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SL38" /translation="MEKFLESPSPEHKAVYETSGTPPPLELTLDNSSDSGLEILEIST VSPVKNTSQGKDNSSSSPDAQEIVLKPSVEELNREVIDREIVKVPERTADFTDGIPPS FHKAAIEKDIIVDGEGRKGCSIDGDHSDDMTSEVDNYMDALATMESEMDTDNEYRPKN DIGFLNIGKYRTDSDANEEKLEVQVHSSDSQSVGISSVSDDGNSSFKKERSSFSYSDT VDNLAEDMPSDGEIAAKEFPSNKNCAAEIVEAPSIHLPACSEMQCSSSDEAWPSKDTS FGECKLPDLGEESHSSCLEELNPTHVLLDPKTSSMAVSLPEPEVPYVDVKTNSDLSEM DGGKYLADSSEKQDVTLITLSAESHQVDELDSEDTNVSSDALPHLSNILQLAPEKRSS NDPFDEVLETDFAGETCAENSVNQMIGSPNSVISSAEEQLPCSTFAEVERSSEGLDVM RPVNLVSEVNDATLEAGVKSECMAPMVGTSQTCGFNEQKCSDGINDDPQLEADSTEIG ASYSEQKQNADQLFDVAEGEGTGEITCRVSMVGGDAIACDLPSNSADNLDLNNHVGLD DLATETVHAETMAVSTAACGSADLDDDVDNTTSESSNLICSPSKNQKNLQEPLSGAGD LCTEGLESDEVISQECLVESEAQEETNQAEGAPADLESTSCKLVSYDNSNLEDDIHDP SLAEPAKNSLNFIDLTTVPASSELSDQESESKYLSHLIESRADVVSSPTRCLSEKETS FEQSLDLHTSQHDMGSLQMVEDSSNSLNLLSNQIESLNHINQERCLQTASEHSAEGSS SQPSVEFSQQSGRQDKQEMYPSDSTQPAVVLLHGATKVSMEEMPPLPPLPPMQWRIGR AQHASPASQRELVEHGQGSFSMIPQYAIEQKAQFGLSALESRNPFLPLVKGEERYGHV SDQFATDFMQPSPFPMDPPTMGNSANSQYDGIHLDRTHPNPFLTLPIISNESHEYGSA AMEDDRVESSFSFLSMPVTEHATSRHIPESLHEKTTHAPNQFVLDTGLEGGAFKHPKQ NSEGEHGNPPDIFVASSTKREEQSPTKVAEELPTKVEEQFPTTVEEQHGLAAPEGETS QTSNTTVQHDLSTSEGEANGNANGNPNVKLPRPRNPLIDAVAAHDKSKLRKVTERVRP PMIPKVDERDSLLEQIRTKVRPNSRILDILFVPYFIYRKKSVERWEMHLSDKVRADLL CFVQSFNLKPAAVTRPSIQGPKTNLRVAAILEKANAIRQALAGSDEDDGDEDDWSDC" CDS join(281844..285251,285367..285453,285583..285687, 285774..285830) /locus_tag="TCM_021577" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29820.m001037" /codon_start=1 /product="SCAR, putative isoform 4" /protein_id="EOY07043.1" /db_xref="TAIR:AT2G38440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SL38" /translation="MEKFLESPSPEHKAVYETSGTPPPLELTLDNSSDSGLEILEIST VSPVKNTSQGKDNSSSSPDAQEIVLKPSVEELNREVIDREIVKVPERTADFTDGIPPS FHKAAIEKDIIVDGEGRKGCSIDGDHSDDMTSEVDNYMDALATMESEMDTDNEYRPKN DIGFLNIGKYRTDSDANEEKLEVQVHSSDSQSVGISSVSDDGNSSFKKERSSFSYSDT VDNLAEDMPSDGEIAAKEFPSNKNCAAEIVEAPSIHLPACSEMQCSSSDEAWPSKDTS FGECKLPDLGEESHSSCLEELNPTHVLLDPKTSSMAVSLPEPEVPYVDVKTNSDLSEM DGGKYLADSSEKQDVTLITLSAESHQVDELDSEDTNVSSDALPHLSNILQLAPEKRSS NDPFDEVLETDFAGETCAENSVNQMIGSPNSVISSAEEQLPCSTFAEVERSSEGLDVM RPVNLVSEVNDATLEAGVKSECMAPMVGTSQTCGFNEQKCSDGINDDPQLEADSTEIG ASYSEQKQNADQLFDVAEGEGTGEITCRVSMVGGDAIACDLPSNSADNLDLNNHVGLD DLATETVHAETMAVSTAACGSADLDDDVDNTTSESSNLICSPSKNQKNLQEPLSGAGD LCTEGLESDEVISQECLVESEAQEETNQAEGAPADLESTSCKLVSYDNSNLEDDIHDP SLAEPAKNSLNFIDLTTVPASSELSDQESESKYLSHLIESRADVVSSPTRCLSEKETS FEQSLDLHTSQHDMGSLQMVEDSSNSLNLLSNQIESLNHINQERCLQTASEHSAEGSS SQPSVEFSQQSGRQDKQEMYPSDSTQPAVVLLHGATKVSMEEMPPLPPLPPMQWRIGR AQHASPASQRELVEHGQGSFSMIPQYAIEQKAQFGLSALESRNPFLPLVKGEERYGHV SDQFATDFMQPSPFPMDPPTMGNSANSQYDGIHLDRTHPNPFLTLPIISNESHEYGSA AMEDDRVESSFSFLSMPVTEHATSRHIPESLHEKTTHAPNQFVLDTGLEGGAFKHPKQ NSEGEHGNPPDIFVASSTKREEQSPTKVAEELPTKVEEQFPTTVEEQHGLAAPEGETS QTSNTTVQHDLSTSEGEANGNANGNPNVKLPRPRNPLIDAVAAHDKSKLRKVTERVRP PMIPKVDERDSLLEQIRTKSFNLKPAAVTRPSIQGPKTNLRVAAILEKANAIRQALAG SDEDDGDEDDWSDC" gene 286384..289818 /locus_tag="TCM_021578" /note="dbxref CacaoGD:Thecc1EG021578" mRNA join(286384..286674,286894..286946,287063..287369, 287681..287750,287856..287945,289548..289818) /locus_tag="TCM_021578" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01030249001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042415t1" /inference="similar to AA sequence:Phytozome:Glyma01g31990.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g12903t1" CDS join(286666..286674,286894..286946,287063..287369, 287681..287750,287856..287905) /locus_tag="TCM_021578" /note="paralog of Thecc1EG042415t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07045.1" /db_xref="Phytozome:Glyma01g31990.1" /db_xref="TAIR:AT2G38450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HYJ0" /translation="MLLIKKEKNPQKKKRKKPKERSLPGATKLQHLAKATAQHLNKTG KNAKPTAQNRRIVSEDKSKNKMESSSASQRLPLSDVVSDCVKRWFKDTLKEAKAGDVN MQVLVSQMYYSGYGVPRDAQKGRIWMTRASRLRSSVWKVSDKHPGYNASDSDSDEMKG DS" gene 286981..293465 /locus_tag="TCM_046793" /note="dbxref CacaoGD:Thecc1EG046793" mRNA join(286981..287369,287681..287750,287856..287945, 289548..290513,290779..290929,291194..291390, 291729..292214,292327..292498,292608..292745, 292887..292997,293117..293465) /locus_tag="TCM_046793" /product="Iron regulated 1 protein" /inference="alignment:exonerate- protein:2:ricco:29820.m001034" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046795t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s13630.1" /note="quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g217t3" CDS join(290416..290513,290779..290929,291194..291390, 291729..292214,292327..292498,292608..292745, 292887..292997,293117..293245) /locus_tag="TCM_046793" /note="paralog of Thecc1EG046795t1" /codon_start=1 /product="Iron regulated 1 protein" /protein_id="EOY07046.1" /db_xref="Phytozome:POPTR_0016s13630.1" /db_xref="TAIR:AT5G03570.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O80905" /translation="MERQLLLAQELRPPSSLLKNLYAAHFLARWGARMWEFSVGLYMI SVWPDSLLLAAIYGAVESASTALFGSVIGRWVDRLTYVKVLKLWLVTQNLSLIIAGCA VMALLVFSSLKVTNLVAFISLVILTNISGAVGVLSTLAGTILIEREWVVVISEGHPPG LLTEMNSVIRRIDLTCKLVAPVITGFIISFVSLKASAMTLALWTTITVWVEYWLFMSV YNGIPALGESSLRRISEVSPSDVAEESTSASQEIPDSLSNNGENSAAAGKNSGSKFIE WVAKVPYIDAWRVYLQQDVVLPGVALALLYFTVLSFGTLMTAALEWEGIPAFVIGIAR GISASIGIAATVVYPMLQSRILTLRTGLWSVWSQWNCLLLCVASIWVKNSHLSAYMLM GGVATSRLGLWMFDLSVIQQMQDLVPESNRCIVGGVQSSLQSTLDFMGYVMGILISNP RDFWKLSMMSFCAVTLAAFLYTFHLYRIRKHLFHLEKLLSLVQ" mobile_element 295352..295979 /note="source:CACAO_on_E445_scaffold_2 3 686" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 296007..299098 /locus_tag="TCM_046794" /note="dbxref CacaoGD:Thecc1EG046794" mRNA join(296007..296149,296425..296575,296840..297035, 297389..297662,297693..297874,297987..298158, 298268..298405,298547..298657,298970..299098) /locus_tag="TCM_046794" /product="Iron regulated 1, putative" /inference="alignment:exonerate- protein:2:Phytozome:Sb10g022120.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046793t1" /inference="similar to AA sequence:ricco:29820.m001033" /note="quality class is strong-expertchoice, express is weak, homology is paralog strong, intron is strong, protein is complete; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc179t27" CDS join(296890..297035,297389..297662,297693..297874, 297987..298158,298268..298405,298547..298657, 298970..299011) /locus_tag="TCM_046794" /note="dbxref ricco:29820.m001033; paralog of Thecc1EG046793t1" /codon_start=1 /product="Iron regulated 1, putative" /protein_id="EOY07047.1" /db_xref="TAIR:AT2G38460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80905" /translation="MCSNGLAGIFKPQGHKSHSIHLPGDIDQHLWSCWCAFNSSSTIL IEREWVVVLSEGHPPDLLTEMNSVIRRIDLTCKLVAPVITGFIISFVSLKASAMTLAL WTTITVWVEYWLFMSVYNGIPALGESSLRRISEVSPSDEIPDSLSNDGENSAAAGKNS GSKFIECVAKVPYIDAWRVYLQQDVVLPGVALALLYFTVLSFGTLMTAAFEWEGIPAF VIGIARGISASIGIAATVVYPMVQSRILTLRTGLWSVWSQWNCLLLCVASIWVKNSHL SAYMLMGGVATSRLGLWMFDLCVIQQMQDLVPESDRCIVGGVQNSLQSTLDLMAYVMG ILISNPQIHMRSMYYHKIIC" gene 299540..303014 /locus_tag="TCM_046795" /note="dbxref CacaoGD:Thecc1EG046795" mRNA join(299540..300013,300273..300423,300689..300885, 301230..301748,301861..302032,302142..302279, 302424..302534,302654..303014) /locus_tag="TCM_046795" /product="Iron regulated 1 protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01030250001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046793t1" /inference="similar to AA sequence:frave:gene13805" /note="quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g227t2" CDS join(299919..300013,300273..300423,300689..300885, 301230..301748,301861..302032,302142..302279, 302424..302534,302654..302782) /locus_tag="TCM_046795" /note="dbxref frave:gene13805; paralog of Thecc1EG046793t1" /codon_start=1 /product="Iron regulated 1 protein" /protein_id="EOY07048.1" /db_xref="TAIR:AT2G38460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80905" /translation="MSQPLPAQEQRPPSSLLKYLYAAHFLARWGARMWEFSVGLYMIS VWPDSLLLAAIYGAVESASTALFGPIIGRWVDRLTYVKVLKLWLVTQNLSFIIAGCAV MALLVFSSLKVTNLVAFISLVILTNISGAVGVLSTLAGTILIEREWVVVISEGHPPAL LTEMNSVIRRIDLTCKLVAPVITGFIISFVSLKASAMTLALWTIITVWVEYWLFMSVY SGIPALGESSLRRISEVSPSDVVEESTSASQDVVEESTSASREIPDSLSNDGENSAAA RKNSWSKFIEWVSKVPYIDAWRVYLQQDVVLPGVALALLYFTVLSFGTLMTATLQWEG IPAFVIGIARGISASIGIAATVVYPMVQSRILTLRTGLWSVWSQWICLLLCVASIWVK NSHLSAYMLMGGVATSRLGLWMFDLSVIQQMQDLVPESNRCIVGGVQSSLQSTLDFMG YVMGILISNPRDFWKLSMMSFCAVTLAAFLYTFHLYRVRKHLFHLEKLLSLVQ" gene 306561..315476 /locus_tag="TCM_021580" /note="dbxref CacaoGD:Thecc1EG021580" mRNA join(306561..307783,308070..308195,308615..308719, 308834..309227,309310..309439,309650..309944, 310032..310251,310611..310685,312924..313249, 313361..313549,314025..314632,314730..314891, 314985..315476) /locus_tag="TCM_021580" /product="RNI-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s13610.1" /inference="similar to AA sequence:ricco:29820.m001031" /note="quality class is strong, express is medium, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g158t2" CDS join(307139..307783,308070..308195,308615..308719, 308834..309227,309310..309439,309650..309944, 310032..310251,310611..310685,312924..313249, 313361..313549,314025..314632,314730..314891, 314985..315426) /locus_tag="TCM_021580" /note="dbxref ricco:29820.m001031" /codon_start=1 /product="RNI-like superfamily protein" /protein_id="EOY07049.1" /db_xref="TAIR:AT5G01720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RWU5" /translation="MKKQKKECFGGFNPFDLLSEEIIFMILDLLHRNPLDKKSFSLVC KSFYATESNHRRTLKPLRQEHLPAILCRYSNITHLDLTLCSRVTDASLSIISNACTST LRSVDFSRSRLFSTSGLLGLALNCKNLVEIDLSNGTDLKDSAMAAVAEAKNLEKLWLA RCKSITDLGVGCVAVGCRKLRFVCLKWCLGVGDLGVGLIAVKCKQILYLDLSYLPITN KCLSSVLKLQHLEDLVMEGCFGIDDDSLAVLKHGCKSLKSLDVSTCQNITDSGLSSLI SGAEGLQQLTLAHGSPVTSSLADCLKKLSLLQSVKLDGCLITYDGLKTIGNWCLSLRE LSLSKCLGVTDEGLSSVVTKHKDLRKLDITCCRKITDVSVAHITNSCNFLSSLRMESC TLVSRKAFGLIGQQCHLLEELDLTDNEIDDEGLKSISRCSKLSNLKLGICLNITDEGL IHIGRGCSKLIELDLYRCAEITDLGILAIAQGCPGLEMINIAYCKDITDRSLLSLSKC SCLKTFESRGCSRITSLGLTAIAVGCKELSKLDIKKCHNIDDAGMLPLAHFSQNLRQI NLSHSSVTDVGLLSLASISCLQNITILHLKGLTPSGLAAALLACAGLRKVKLQAAFRW LLPHRLFEHLEARGCGIRSQVLEITVGRSNAIEILEDLVGTNTSNTSSINSQTAFPFS NSNPMAASSSFMNMDNINQNRSTSITSWGLSGHQVTDKFGIEIPKFKSLAPSSLPISP APVSPSSYLVTPPAAFSPTDFLDSPVLFSTSSIFPSPTTGAFAGQTLNWRSNSNDNQQ GIKGEHNNFFDFSFQPQPGPSSTSSSTFQSSSNIVSVEQSTWNFSEPMKQPELPVEKA ARVKSEFAPMQNFSSEMAPSQTTMQQSNTGSQPAGYNQYNQSTQYTRENRKVQDGYNW RKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRR SSSHAACTNSEISDQSGGTLGNEQTDSFLVHEDTSGSIGEDEFDQASPLSNPGGDDNE NEPDAKRWKGENENEGIIGSGSRTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGN PNPRSYYKCTTIGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGYAINRPSTT NNSNAPMPIRPSAVPSQASNTSYPNSLQTRLPTSGSQPPVTLEMLQNQGSYGFSGFGK PIGSYMSQAQFSEGAFARAKDEPEDDSFFDGFLS" gene complement(315853..317289) /locus_tag="TCM_021581" /note="dbxref CacaoGD:Thecc1EG021581" mRNA complement(join(315853..316303,316760..316895, 316999..317289)) /locus_tag="TCM_021581" /product="CASP-like protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s13590.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021582t1" /inference="similar to AA sequence:Phytozome:Glyma18g44020.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaB_g12696t00001" CDS complement(join(316112..316303,316760..316895, 316999..317267)) /locus_tag="TCM_021581" /note="paralog of Thecc1EG021582t1" /codon_start=1 /product="CASP-like protein, putative" /protein_id="EOY07050.1" /db_xref="Phytozome:Glyma18g44020.1" /db_xref="TAIR:AT2G38480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LE26" /translation="MSNPDEPTKNNHAGSPVPAETPTADVENPTPAAGFGVSAITRRW KREDLLKRGSLVARGLALLFSLLSFIIMASNKHGDRKNFDNYEEYRYLLAIAILSTLY TGVQALRHVHEISTGKQIFERRISAMVDFLGDQVVAYLLISSASAAIPMTNRMREGQD NIFTDSSASAISMSVFAFLSLALSAMVSGYNLSTQSYI" gene complement(317790..319621) /locus_tag="TCM_021582" /note="dbxref CacaoGD:Thecc1EG021582" mRNA complement(join(317790..318250,318739..318868, 318970..319621)) /locus_tag="TCM_021582" /product="CASP-like protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s13590.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021581t1" /inference="similar to AA sequence:Phytozome:Glyma09g41680.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.20 coverage" CDS complement(join(318059..318250,318739..318868, 318970..319241)) /locus_tag="TCM_021582" /note="paralog of Thecc1EG021581t1" /codon_start=1 /product="CASP-like protein, putative" /protein_id="EOY07051.1" /db_xref="Phytozome:Glyma09g41680.1" /db_xref="TAIR:AT2G38480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LE26" /translation="MSNPDEPTKNNHEVSPAPPTATDVENPTQGVESGVSAITSRWRR EDLLKRGSLVARGLALLFSFLSFTIMASNKHGDEEDGEDFNKYQEYRYLLAIAILSFL YTGGQVGRHVIWTGKQIFERRVCAMVDFLGDQVMAYLLISSASAAIPVTNQMREGLDN IFTDSSAAAISMSFLAFLSLALSAMVSGHKLSTQSYI" mobile_element complement(322986..323039) /note="source:scaffold_6_CACTA_0717 7120 7173" /mobile_element_type="transposon:TIR/CACTA" gene 323726..325804 /locus_tag="TCM_021583" /note="dbxref CacaoGD:Thecc1EG021583" mRNA 323726..325804 /locus_tag="TCM_021583" /product="Methyltransferases" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024625001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042238t1" /inference="similar to AA sequence:TAIR:AT5G01710.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g12917t1" CDS 323892..325448 /locus_tag="TCM_021583" /note="paralog of Thecc1EG042238t1" /codon_start=1 /product="Methyltransferases" /protein_id="EOY07052.1" /db_xref="TAIR:AT5G01710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M005" /translation="MEPTSGKPSLLRNILARALLFGVIVIVVRFAYVVTITGESCNIG DFCFFSLPQNLNFVIPGSGAGVSAVIGNDAVPRSNPRRDLYTSKEWIKAVHFYSSIFQ DLISEGYLTPHSKSLCVETPSGQDVFALKEIGVEDSVGIFKKAAKPLVIKGEGHLIPF DDNTFDFIFSGGARLDVSARPSEFASEIARTLKPEGFALVHIQANDTYSFNSFLDLFN SCKLVKMHEIDGFDSSMPYIREIVLKKEFEILHHGDRKMPDGNSYNKCSVPGHKRELV QKAEPLIEEEPLKPWITLKRNINNIKYLPSMVDISFKNRYVYVDVGARSYGSSIGSWF RKQYPKQNKTFHVYAIEADKHFHKQYELKKKRVTLLPYAAWVRNESLSFEINGDPGQE EVNELKDKGRGMGRIQPVKSRQGEFTGEVDEIQGFDFAEWLKNTVTERDFVVMKMDVE GTEFDLIPRLFETGAICLIDEIFLECHYNRWQRCCPGQRSTKYEKNYGQCLELFTSLR KSGVLVHQWW" mobile_element 326458..326668 /note="source:CACAO_on_E48_scaffold_6 2380 2564" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(326479..326720) /note="source:scaffold_4_CACTA_0511 13579 13831" /mobile_element_type="transposon:TIR/CACTA" mobile_element 326645..326945 /note="source:CACAO_on_E33_A_scaffold_3 860 1143" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(326691..327264) /note="source:scaffold_4_CACTA_0511 12877 13444" /mobile_element_type="transposon:TIR/CACTA" gene 327607..332003 /locus_tag="TCM_021584" /note="dbxref CacaoGD:Thecc1EG021584" mRNA join(327607..328422,329302..329670,329770..329887, 329987..330210,330550..330828,330919..331004, 331551..332003) /locus_tag="TCM_021584" /product="Phosphatase 2C family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s10580.1" /inference="similar to AA sequence:ricco:29820.m001025" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc3162t1" CDS join(328204..328422,329302..329670,329770..329887, 329987..330210,330550..330828,330919..331004, 331551..331803) /locus_tag="TCM_021584" /note="dbxref ricco:29820.m001025" /codon_start=1 /product="Phosphatase 2C family protein, putative" /protein_id="EOY07053.1" /db_xref="TAIR:AT5G01700.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HD82" /translation="MGACCSTQIKYNGCRPHEHDLEEIEDRVAHEDGDTTIRRDGAIV RFQGSSSYTSMYTRQGKKGVNQDAMTVWENFMGEKNVFFCGVFDGHGASGHRIARYIC DTLPPKLSSVIRASQPDACQENVDAVAVGQNHGKDDSTGVNKDSDKEDSNHNEILSSW EASLIQAFGEVDEDLMLEESLDSYCSGTTAVIIVKQAEHLIVSNLGDSRAVLCTRDDT NQLVPVQLTVDLKPSIPSEAERIQRYGGRVFAMDEEPNVQRVWMPNQDYPGLAMARAF GDFCLKDHGLSSIPQVSYRRLTSKDEFVVLATDGVWDVLTNNEVIRIVASVKKRSIAA KLLVYYAVQTWRTKYPGSKVDDCAVVCLFLKKRPFVSRSFSDMRQHTGSHLDVTDSSI SKDKKTDEGETSESEEISSGFWRNRSQMVISNDFPNLTMRISSTANKRVEYMEETVTE AANTAQVLKSIDKDFDLILVERRHDEESLMLIFLSECTEMAELGAIGDLLVSSDFESM ASVAGFQ" gene 331927..335362 /locus_tag="TCM_021585" /note="dbxref CacaoGD:Thecc1EG021585" mRNA join(331927..332063,333536..334030,334114..334214, 334285..334558,334644..335362) /locus_tag="TCM_021585" /product="Cation/hydrogen exchanger 15-like protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024625001.2" /inference="similar to AA sequence:Phytozome:GSVIVT01024625001" /note="quality class is medium, express is medium, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.37 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g124t1" CDS join(333581..334030,334114..334214,334285..334558, 334644..335156) /locus_tag="TCM_021585" /codon_start=1 /product="Cation/hydrogen exchanger 15-like protein" /protein_id="EOY07054.1" /db_xref="Phytozome:GSVIVT01024625001" /db_xref="TAIR:AT2G13620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GUI0" /translation="MSKQTPEGERIKESILGIILLLVLGCAFAGEFIGVHAFVGPTLL GLVLPDRSALAATLVDEVESFVTFAILPFFFLSYGLSTELHSINARAYFALQFLVPFG FSAKFLGITLVSVFYCDFVLKDAIILGLILSSIGITDVQFYRRSFQLELIDYRCFGVM ITSSIVMAGFSSYVVKALYDPFRSVHNQEYVPSIINLLEASNPTRESQMCVNLLHLIE LAAGVSPAAVHQSWETRYHRSLPRRHHPHVKPRHSLYKPTESIINAFRIFERNNESLK PCLIIIPIHIKWNSGGIATESPEFRNVNLKVIVNAPCSVGILVDRGSQGGPRSVQGCW CLYRVSVLFIGGPDDREAVSCATRMANHPHVNVTVIRLTALLEIADNTEEKRLDSVTI HTFKKTNVTREKAAYKEEILADSAETCNLIHSMENEFDLILVGRRTESPLLLG" gene complement(335351..337988) /locus_tag="TCM_021586" /note="dbxref CacaoGD:Thecc1EG021586" mRNA complement(join(335351..335967,336111..336353, 336427..336498,336655..336786,336896..336983, 337342..337415,337502..337552,337791..337988)) /locus_tag="TCM_021586" /product="NAD(P)-linked oxidoreductase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01030263001" /inference="similar to AA sequence:TAIR:AT5G01670.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00143t00006" CDS complement(join(335878..335967,336111..336353, 336427..336498,336655..336786,336896..336983, 337342..337415,337502..337552,337791..337934)) /locus_tag="TCM_021586" /codon_start=1 /product="NAD(P)-linked oxidoreductase superfamily protein" /protein_id="EOY07055.1" /db_xref="TAIR:AT5G01670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GXW0" /translation="MSQATFTQEGQKTQSFGLLYGHTIPAVGLGTRRSGSQAENSVFT AIVEAVYRHIDTAWEYGVQEDVGRATKAAIHAGLERRNLFIASKLWCTDLCPERVQPA LKNTLQELQLEYLDLYLIHCPFRLRDEPAGLPRLGIYRISAWKWFGEKWKSLSRKTLL ETLMEMHPGWRNDKMLEACRKNGIHVTAYSPLGSSAGGRDLIHDQTVERIANKLTKTT GQVLVKWALQRGTSVIPKSSNPDRIKENIKVFGWQLPEEDFQALCNIPDERRVLNGAE LFVNKDVGPFRSVADLWDYED" gene 338275..338793 /locus_tag="TCM_021587" /note="dbxref CacaoGD:Thecc1EG021587" mRNA 338275..338793 /locus_tag="TCM_021587" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.52 coverage" CDS 338594..338755 /locus_tag="TCM_021587" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07056.1" /translation="MTYDTKAVFALPLIVHLGGTNLLKFESSEYGVLSCLFAPQTASL EPSIPRLRC" gene complement(339155..341842) /locus_tag="TCM_021588" /note="dbxref CacaoGD:Thecc1EG021588" mRNA complement(join(339155..339977,340135..340276, 340612..340736,340835..341842)) /locus_tag="TCM_021588" /product="SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s13540.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036506t7" /inference="similar to AA sequence:Phytozome:POPTR_0016s13540.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g12974t2" CDS complement(join(339717..339977,340135..340276, 340612..340736,340835..341575)) /locus_tag="TCM_021588" /note="paralog of Thecc1EG036506t7" /codon_start=1 /product="SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein" /protein_id="EOY07057.1" /db_xref="Phytozome:POPTR_0016s13540.1" /db_xref="TAIR:AT3G51670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GXS8" /translation="MEKSPSPIPIPEKTPPQDLPEASPKPYKKSFVTTLMEAATLRSP SFKEDTYFISQLKSSEKKALQELKDKLMASYGPDGECAMWGIPLLGGDEKADVILLKF LRARDFRVSDSLHMLEKCLAWRKEFSADNVAEEDLGFKELEGVVAYMHGYDREGHPVC YNAYGVFRDKDMYERIFGDEEKLKKFLRWRVQVLERGINLLHFKPGGINSIIQVTDLK DMPKRELRVASNQILSLFQDNYPEMVARKIFINVPWYFSLLYSMFSPFLTQRTKSKFV ISREGNAAESLYKFIRPEDVPVQYGGLSRLNDLQNGPPKPASEFTVKGGEKVNIQIEG IEAGATITWDLVVGGWDLEYSAEFVPNAEGSYTIAVEKPRKLSPSEEAIHNFFTSREA GKMVLSVDNSASRRKKVAAYRYIVRKSALV" gene 343027..352648 /locus_tag="TCM_021589" /note="dbxref CacaoGD:Thecc1EG021589" mRNA join(343027..343504,345255..345279,347342..347483, 348152..348327,348525..348706,348797..349477, 349617..349694,350241..350403,350500..350565, 350649..350848,351303..351379,351554..351655, 352006..352192,352279..352648) /locus_tag="TCM_021589" /product="Beta-propeller, Kelch repeat type 1, Development/cell death domain, Kelch related, Kelch-type beta propeller, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s13530.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s13530.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g215t3" CDS join(345258..345279,347342..347483,348152..348327, 348525..348706,348797..349477,349617..349694, 350241..350403,350500..350565,350649..350848, 351303..351379,351554..351655,352006..352192, 352279..352374) /locus_tag="TCM_021589" /codon_start=1 /product="Beta-propeller, Kelch repeat type 1, Development/cell death domain, Kelch related, Kelch-type beta propeller, putative" /protein_id="EOY07058.1" /db_xref="Phytozome:POPTR_0016s13530.1" /db_xref="TAIR:AT5G01660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IGK0" /translation="MALGREIVGDGHFCFVKADISCFALCVREPSRRSLSVCVLLQTK PTVTLKLYSPLMGTGRKPQTFLVNGNAPYTPNLTNSNVAARNLRKSQLGGVIFGCKDS TFKECLFKQLFGLPAQHFSFVKNIDPGLPLFLFNYTDRKLHGIFEAASRGQMNINPYG WTTDGSEKTQYPAQVQIRIRLHCQPLLEEQFRPIIADNYYCRNHFWFELDHTQTSKLM SLLASLAVSPSTYLHHNMAKWRNIFQALPSTGTNGEGEGFRQLVPEMEHSNHSRKKSD TDVYFDEIKVADEGFKPPAQEVEHFSQSSGKSDSTDFTLFDSLEAHVDAKTTGQDEKD FILIKLKELAQKRKDQDVSLMDNVEDSTVLKGTHFEDSVSSREQMDLVPENEDGACSS SQCQSVIAQLIQGMEELGAFKAEQSMKMIQMEQKLVAAEMEIQKLRDRCLMLESLSNH SVEHVNGKAIEPSEELQLDPTESIFLVGGYDAAQLNGELYVFGGGDGYSWYDTVESYS PSSDEWTRCPSLKEKKGSLAGAALDGKIFAIGGGNGVQSFADVEMLDSILGRWINTRS MLQKRFALAAVELNGAIYATGGYDGNDYLKSAERFDPREHSWTKIASMSTKRGCHSLA VLDEKLYAIGGFDGTKMVPSVEIFDPRLGSWMSGEPINQARGYAVATVVKGSIYVIGG LRAGEDIVDSVECFKEGQGWELKTTKAVGKRCFLSAIALKS" gene complement(350240..357967) /locus_tag="TCM_021590" /note="dbxref CacaoGD:Thecc1EG021590" mRNA complement(join(350240..350565,350649..350848, 351303..351374,351549..351655,352006..352200, 352277..353602,353924..354456,355222..355311, 355462..355602,355929..356120,356537..356761, 356937..357017,357129..357796)) /locus_tag="TCM_021590" /product="ARM repeat superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s13520.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s13520.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc198t10; alternateUTRof:Thecc1EG021590t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc144t13" mRNA complement(join(350240..350552,350647..350848, 351303..351374,351549..351655,352006..352200, 352277..353602,353924..354456,355222..355311, 355462..355602,355929..356120,356537..356761, 356937..357017,357129..357796)) /locus_tag="TCM_021590" /product="ARM repeat superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s13520.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s13520.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc198t2; alternateUTRof:Thecc1EG021590t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc144t13" mRNA complement(join(352169..353602,353924..354456, 355222..355311,355462..355602,355929..356120, 356537..356761,356937..357017,357129..357967)) /locus_tag="TCM_021590" /product="ARM repeat superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s13520.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s13520.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc144t13; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc144t13" CDS complement(join(352678..353602,353924..354456, 355222..355311,355462..355602,355929..356120, 356537..356761,356937..357017,357129..357773)) /locus_tag="TCM_021590" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="ARM repeat superfamily protein, putative isoform 1" /protein_id="EOY07059.1" /db_xref="Phytozome:POPTR_0016s13520.1" /db_xref="TAIR:AT3G08800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GXT0" /translation="MEQLVMNSIEQSLDNNQPLSFQTLASIRSLVINPSTSDSTLSSV LNALTRSLQLSRDSVFLHHVVKLLTDLSSRCPHLSPVAIDLLRSNSLFTSSDSPRLVG ESLSALVSLTSSQNDVDDARFVSLCLSPSVSVRLWLLRNAEKFAVRDSVLLAVFLGFT RDPYPYVRKAALDGLVKLCEKGDFDDHDVAQGCYFRAVELLCDAEDCVRSPAVRAVCG WGKMIVVSTEERNKQDLADAVFIQLCCMVRDMSMEVRLEAFDALGKIGLVSEDILLQT VSKKVLGMNKEKIYKPIEGLEISASGAAGAFVHGLEDEFSEVRMSACYSLRTLTVFSL RFAGEALNLLMDMLNDDSTVVRLQALGTMHHMAISNNLKVEEIHMHRFLGTLFDSSSA IRFVTRKILKLAKLPKLGLFKLCIDGLLGNLETYPEDEVDVFSVLFHIGRNHGKFTVC MIEEVSSELEPAFGGKLGFDSTRVAAFLVLAISVPLSHEKDARGVPPRIFSYAVTWLG RISHALSDLMSQETLLAYLSECSRSSIISLADFKIKDALPTVEGDMPSHLCSDVGSPV RIPLWQQDGETSDHHHTKLWSLGKSATHAEYELGEHDELRKSLNLIFRKVKDLWPLVQ LGCTNEALKAIRACKEEVASYTAESPGSAGAVAFTLQYLRITKLLVAVWEHLLLTKKL NPYGVGKLELLLAKLDRRLREINNRFIGLSKGEELQIMDLIVVACLLRLSKVEIYCYE TAMKKLSSTISHVEFLHKEGSIEPSHFMVEVKKSLHEVGSSIGGNTCKPLLFKKLVDS FSFEQFVLCASPRYLNAELEVPGNDSESPLPFISGIPASIPLVITLHNISSDNKLWLR ISMSEESTQFVFLDLNLIRGNNEVRKFTFVAPFYLTPKAVSFTLRVSIGMECMGETLH LVKTFGGPKCELTYLSPEKEIFLCKSTKC" CDS complement(join(352678..353602,353924..354456, 355222..355311,355462..355602,355929..356120, 356537..356761,356937..357017,357129..357773)) /locus_tag="TCM_021590" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="ARM repeat superfamily protein, putative isoform 1" /protein_id="EOY07060.1" /db_xref="Phytozome:POPTR_0016s13520.1" /db_xref="TAIR:AT3G08800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GXT0" /translation="MEQLVMNSIEQSLDNNQPLSFQTLASIRSLVINPSTSDSTLSSV LNALTRSLQLSRDSVFLHHVVKLLTDLSSRCPHLSPVAIDLLRSNSLFTSSDSPRLVG ESLSALVSLTSSQNDVDDARFVSLCLSPSVSVRLWLLRNAEKFAVRDSVLLAVFLGFT RDPYPYVRKAALDGLVKLCEKGDFDDHDVAQGCYFRAVELLCDAEDCVRSPAVRAVCG WGKMIVVSTEERNKQDLADAVFIQLCCMVRDMSMEVRLEAFDALGKIGLVSEDILLQT VSKKVLGMNKEKIYKPIEGLEISASGAAGAFVHGLEDEFSEVRMSACYSLRTLTVFSL RFAGEALNLLMDMLNDDSTVVRLQALGTMHHMAISNNLKVEEIHMHRFLGTLFDSSSA IRFVTRKILKLAKLPKLGLFKLCIDGLLGNLETYPEDEVDVFSVLFHIGRNHGKFTVC MIEEVSSELEPAFGGKLGFDSTRVAAFLVLAISVPLSHEKDARGVPPRIFSYAVTWLG RISHALSDLMSQETLLAYLSECSRSSIISLADFKIKDALPTVEGDMPSHLCSDVGSPV RIPLWQQDGETSDHHHTKLWSLGKSATHAEYELGEHDELRKSLNLIFRKVKDLWPLVQ LGCTNEALKAIRACKEEVASYTAESPGSAGAVAFTLQYLRITKLLVAVWEHLLLTKKL NPYGVGKLELLLAKLDRRLREINNRFIGLSKGEELQIMDLIVVACLLRLSKVEIYCYE TAMKKLSSTISHVEFLHKEGSIEPSHFMVEVKKSLHEVGSSIGGNTCKPLLFKKLVDS FSFEQFVLCASPRYLNAELEVPGNDSESPLPFISGIPASIPLVITLHNISSDNKLWLR ISMSEESTQFVFLDLNLIRGNNEVRKFTFVAPFYLTPKAVSFTLRVSIGMECMGETLH LVKTFGGPKCELTYLSPEKEIFLCKSTKC" CDS complement(join(352678..353602,353924..354456, 355222..355311,355462..355602,355929..356120, 356537..356761,356937..357017,357129..357773)) /locus_tag="TCM_021590" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="ARM repeat superfamily protein, putative isoform 1" /protein_id="EOY07061.1" /db_xref="Phytozome:POPTR_0016s13520.1" /db_xref="TAIR:AT3G08800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GXT0" /translation="MEQLVMNSIEQSLDNNQPLSFQTLASIRSLVINPSTSDSTLSSV LNALTRSLQLSRDSVFLHHVVKLLTDLSSRCPHLSPVAIDLLRSNSLFTSSDSPRLVG ESLSALVSLTSSQNDVDDARFVSLCLSPSVSVRLWLLRNAEKFAVRDSVLLAVFLGFT RDPYPYVRKAALDGLVKLCEKGDFDDHDVAQGCYFRAVELLCDAEDCVRSPAVRAVCG WGKMIVVSTEERNKQDLADAVFIQLCCMVRDMSMEVRLEAFDALGKIGLVSEDILLQT VSKKVLGMNKEKIYKPIEGLEISASGAAGAFVHGLEDEFSEVRMSACYSLRTLTVFSL RFAGEALNLLMDMLNDDSTVVRLQALGTMHHMAISNNLKVEEIHMHRFLGTLFDSSSA IRFVTRKILKLAKLPKLGLFKLCIDGLLGNLETYPEDEVDVFSVLFHIGRNHGKFTVC MIEEVSSELEPAFGGKLGFDSTRVAAFLVLAISVPLSHEKDARGVPPRIFSYAVTWLG RISHALSDLMSQETLLAYLSECSRSSIISLADFKIKDALPTVEGDMPSHLCSDVGSPV RIPLWQQDGETSDHHHTKLWSLGKSATHAEYELGEHDELRKSLNLIFRKVKDLWPLVQ LGCTNEALKAIRACKEEVASYTAESPGSAGAVAFTLQYLRITKLLVAVWEHLLLTKKL NPYGVGKLELLLAKLDRRLREINNRFIGLSKGEELQIMDLIVVACLLRLSKVEIYCYE TAMKKLSSTISHVEFLHKEGSIEPSHFMVEVKKSLHEVGSSIGGNTCKPLLFKKLVDS FSFEQFVLCASPRYLNAELEVPGNDSESPLPFISGIPASIPLVITLHNISSDNKLWLR ISMSEESTQFVFLDLNLIRGNNEVRKFTFVAPFYLTPKAVSFTLRVSIGMECMGETLH LVKTFGGPKCELTYLSPEKEIFLCKSTKC" mobile_element 354832..355098 /note="source:CACAO_M_E44210_F112_scaffold_5 2 269" /mobile_element_type="retrotransposon:LTR/Copia" gene 360453..362175 /locus_tag="TCM_021591" /note="dbxref CacaoGD:Thecc1EG021591" mRNA join(360453..360649,361804..362175) /locus_tag="TCM_021591" /product="Tautomerase/MIF superfamily protein" /inference="alignment:exonerate- protein:2:ricco:29820.m001014" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021592t1" /inference="similar to AA sequence:ricco:29820.m001014" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03054t00002" CDS join(360539..360649,361804..362031) /locus_tag="TCM_021591" /note="dbxref ricco:29820.m001014; paralog of Thecc1EG021592t1" /codon_start=1 /product="Tautomerase/MIF superfamily protein" /protein_id="EOY07062.1" /db_xref="TAIR:AT3G51660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HD81" /translation="MPCLYISTNLNLDEVDTGPIFSETTKAVASIIGKPENFVMVILK GSVAISFNGNKDPAAYAEVVSMGGINREVKRKLIATLGTILENMLSIPRTRFFLKVYD TTAGLKISKI" gene 362750..365243 /locus_tag="TCM_021592" /note="dbxref CacaoGD:Thecc1EG021592" mRNA join(362750..362864,364429..364629,364930..365243) /locus_tag="TCM_021592" /product="Tautomerase/MIF superfamily protein" /inference="alignment:exonerate- protein:2:ricco:29820.m001013" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039453t1" /inference="similar to AA sequence:ricco:29820.m001013" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g03929t00002" CDS join(362754..362864,364429..364629,364930..364965) /locus_tag="TCM_021592" /note="dbxref ricco:29820.m001013; paralog of Thecc1EG039453t1" /codon_start=1 /product="Tautomerase/MIF superfamily protein" /protein_id="EOY07063.1" /db_xref="TAIR:AT5G01650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SMV2" /translation="MPCLNLSTNVNLDGVDTSAVLSEATSSVAKLIGKPEAYVMIVLK GSVPMSFGGTEQPAAYGELVSIGGLNPDVNKKLSAAIAAILETKLQVPKSRFFLKFYD TKGSNFGWNGSTF" mobile_element complement(363046..363872) /note="source:scaffold_1_CACTA_0016 1416 2293" /mobile_element_type="transposon:TIR/CACTA" gene 365697..366880 /locus_tag="TCM_021593" /note="dbxref CacaoGD:Thecc1EG021593" mRNA join(365697..366726,366840..366880) /locus_tag="TCM_021593" /product="Prenylated RAB acceptor 1.B4" /inference="alignment:exonerate- protein:2:ricco:29820.m001012" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042426t1" /inference="similar to AA sequence:TAIR:AT2G38360.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00326t00002" CDS 366037..366684 /locus_tag="TCM_021593" /note="paralog of Thecc1EG042426t1" /codon_start=1 /product="Prenylated RAB acceptor 1.B4" /protein_id="EOY07064.1" /db_xref="TAIR:AT2G38360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HCA0" /translation="MSSSAPPVLPISTTQSAESQPPVATPAFRVFISHLNDSLRNGFS QRRSWSELVDRSAFSKPESFSEAALRVRKNYSYFRVNYLSVIGLILAFSLLSHPFSLL LLLGLLCSWIFLYLFRPADQPLVLFGRTFSDRETLGILIIFSVFVVFLTTVGSLLISA LMVGFGLVCAHGAFRVPEDLFLDEQEPAATGFLSFLGGAASNAAAAAAPAVAARV" gene 369463..375865 /locus_tag="TCM_021594" /note="dbxref CacaoGD:Thecc1EG021594" mRNA join(369463..371681,371898..373987,374082..374120, 375521..375728) /locus_tag="TCM_021594" /product="Inflorescence meristem receptor-like kinase 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s13400.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042427t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s13400.1" /note="transcript variant 8; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc728t8; alternateUTRof:Thecc1EG021594t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g251t3" mRNA join(369463..371681,371898..374167,375365..375425, 375523..375550) /locus_tag="TCM_021594" /product="Inflorescence meristem receptor-like kinase 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s13400.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042427t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s13400.1" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc728t7; alternateUTRof:Thecc1EG021594t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g251t3" mRNA join(369463..371681,371898..373987,374087..374167, 375365..375425,375523..375550) /locus_tag="TCM_021594" /product="Inflorescence meristem receptor-like kinase 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s13400.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042427t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s13400.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc728t5; alternateUTRof:Thecc1EG021594t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g251t3" mRNA join(369463..371681,371898..373987,374096..374167, 375365..375425,375523..375550) /locus_tag="TCM_021594" /product="Inflorescence meristem receptor-like kinase 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s13400.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042427t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s13400.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc728t4; alternateUTRof:Thecc1EG021594t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g251t3" mRNA join(369463..371681,371898..372233,372405..373987, 374082..374167,375365..375425,375523..375550) /locus_tag="TCM_021594" /product="Inflorescence meristem receptor-like kinase 2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s13400.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042427t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s13400.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc728t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g251t3" mRNA join(369521..371681,371898..373987,374082..374167, 375363..375425,375523..375865) /locus_tag="TCM_021594" /product="Inflorescence meristem receptor-like kinase 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s13400.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042427t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s13400.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g251t4; alternateUTRof:Thecc1EG021594t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g251t3" mRNA join(369521..371681,371898..373987,374082..374167, 375365..375425,375523..375865) /locus_tag="TCM_021594" /product="Inflorescence meristem receptor-like kinase 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s13400.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042427t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s13400.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g251t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g251t3" mRNA join(369521..371681,371898..373987,374082..374167, 375369..375425,375523..375865) /locus_tag="TCM_021594" /product="Inflorescence meristem receptor-like kinase 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s13400.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042427t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s13400.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g251t5; alternateUTRof:Thecc1EG021594t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g251t3" CDS join(369734..371681,371898..372511) /locus_tag="TCM_021594" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042427t1" /codon_start=1 /product="Inflorescence meristem receptor-like kinase 2 isoform 1" /protein_id="EOY07065.1" /db_xref="Phytozome:POPTR_0016s13400.1" /db_xref="TAIR:AT3G51740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HCA0" /translation="MENTCHLLNESNPLLNENVSGSEDKWNIKPRKKHVSPFVLRNKF FLFAHLFLFLLPFSALLASGQHWDGVIVTQADYQALRAIKHELVDFRGFLRSWNDSGY GACSGRWAGIKCVKGQVIAIQLPWRGLGGRISEKIGQLQALRKLSLHDNVLGGPVPWS LGFLPSLRGVYLFNNRLSGSIPPSVGNCPALQTLDLSNNSLSGTIPPSLANSTRLYRL NLSYNSLLGSIPVRLTRSPSLTILALQHNNLSGSVPDTWVGTGNSSYQLQILTLDHNF LTGAIPVTLRKLSLLEQISLGHNQISGTIPDELGTLSKLQMLDLSSNAISGSFPSSFS SLSSLVSLNLEGNRLDNQIPEGLDKLQNLTVLNLKNNRLSGQIPATIGNISGINQFDL SENNFTGEIPDSLASLTNLSHFNVSYNNLSGAVPSLLAKNFNSSSFMGNLQLCGYSTS TLCPSPAPFNPSPAPAEAPKHHHRKLSVKDIILIAVGGLLAILLILCCILLFCLLKKK ATLKQKSGKMGAVIGKTEKEVPVAGTEVESGGEMGGKLVHFDGPFVFTADDLLCATAE IMGKSNYGTAYKATLEDGNQVAVKRLREKTTKGQREFESEAAALGKIRHPNLLALRAY YLGPKGEKLLVFDYMPRGSLASFLHARGPETTIDWPTRMTIALGITRGLNYLHTQENI IHGNLTSSNILLDEQTNAHIADFGLSRLMTAAASTNVIATAGTLGYRAPELSKLKNAS TKTDVYSLGVIILELLTGKSPGEPMNGMDLPQWVASIVKEEWTNEVFDLELMRDTPTI NDELLNTLKLALHCVDPSPAARPEVQQVLQQLEEIKPEVAAGSGDDGDKVPPTTE" CDS join(369734..371681,371898..372511) /locus_tag="TCM_021594" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG042427t1" /codon_start=1 /product="Inflorescence meristem receptor-like kinase 2 isoform 1" /protein_id="EOY07067.1" /db_xref="Phytozome:POPTR_0016s13400.1" /db_xref="TAIR:AT3G51740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HCA0" /translation="MENTCHLLNESNPLLNENVSGSEDKWNIKPRKKHVSPFVLRNKF FLFAHLFLFLLPFSALLASGQHWDGVIVTQADYQALRAIKHELVDFRGFLRSWNDSGY GACSGRWAGIKCVKGQVIAIQLPWRGLGGRISEKIGQLQALRKLSLHDNVLGGPVPWS LGFLPSLRGVYLFNNRLSGSIPPSVGNCPALQTLDLSNNSLSGTIPPSLANSTRLYRL NLSYNSLLGSIPVRLTRSPSLTILALQHNNLSGSVPDTWVGTGNSSYQLQILTLDHNF LTGAIPVTLRKLSLLEQISLGHNQISGTIPDELGTLSKLQMLDLSSNAISGSFPSSFS SLSSLVSLNLEGNRLDNQIPEGLDKLQNLTVLNLKNNRLSGQIPATIGNISGINQFDL SENNFTGEIPDSLASLTNLSHFNVSYNNLSGAVPSLLAKNFNSSSFMGNLQLCGYSTS TLCPSPAPFNPSPAPAEAPKHHHRKLSVKDIILIAVGGLLAILLILCCILLFCLLKKK ATLKQKSGKMGAVIGKTEKEVPVAGTEVESGGEMGGKLVHFDGPFVFTADDLLCATAE IMGKSNYGTAYKATLEDGNQVAVKRLREKTTKGQREFESEAAALGKIRHPNLLALRAY YLGPKGEKLLVFDYMPRGSLASFLHARGPETTIDWPTRMTIALGITRGLNYLHTQENI IHGNLTSSNILLDEQTNAHIADFGLSRLMTAAASTNVIATAGTLGYRAPELSKLKNAS TKTDVYSLGVIILELLTGKSPGEPMNGMDLPQWVASIVKEEWTNEVFDLELMRDTPTI NDELLNTLKLALHCVDPSPAARPEVQQVLQQLEEIKPEVAAGSGDDGDKVPPTTE" CDS join(369734..371681,371898..372511) /locus_tag="TCM_021594" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG042427t1" /codon_start=1 /product="Inflorescence meristem receptor-like kinase 2 isoform 1" /protein_id="EOY07068.1" /db_xref="Phytozome:POPTR_0016s13400.1" /db_xref="TAIR:AT3G51740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HCA0" /translation="MENTCHLLNESNPLLNENVSGSEDKWNIKPRKKHVSPFVLRNKF FLFAHLFLFLLPFSALLASGQHWDGVIVTQADYQALRAIKHELVDFRGFLRSWNDSGY GACSGRWAGIKCVKGQVIAIQLPWRGLGGRISEKIGQLQALRKLSLHDNVLGGPVPWS LGFLPSLRGVYLFNNRLSGSIPPSVGNCPALQTLDLSNNSLSGTIPPSLANSTRLYRL NLSYNSLLGSIPVRLTRSPSLTILALQHNNLSGSVPDTWVGTGNSSYQLQILTLDHNF LTGAIPVTLRKLSLLEQISLGHNQISGTIPDELGTLSKLQMLDLSSNAISGSFPSSFS SLSSLVSLNLEGNRLDNQIPEGLDKLQNLTVLNLKNNRLSGQIPATIGNISGINQFDL SENNFTGEIPDSLASLTNLSHFNVSYNNLSGAVPSLLAKNFNSSSFMGNLQLCGYSTS TLCPSPAPFNPSPAPAEAPKHHHRKLSVKDIILIAVGGLLAILLILCCILLFCLLKKK ATLKQKSGKMGAVIGKTEKEVPVAGTEVESGGEMGGKLVHFDGPFVFTADDLLCATAE IMGKSNYGTAYKATLEDGNQVAVKRLREKTTKGQREFESEAAALGKIRHPNLLALRAY YLGPKGEKLLVFDYMPRGSLASFLHARGPETTIDWPTRMTIALGITRGLNYLHTQENI IHGNLTSSNILLDEQTNAHIADFGLSRLMTAAASTNVIATAGTLGYRAPELSKLKNAS TKTDVYSLGVIILELLTGKSPGEPMNGMDLPQWVASIVKEEWTNEVFDLELMRDTPTI NDELLNTLKLALHCVDPSPAARPEVQQVLQQLEEIKPEVAAGSGDDGDKVPPTTE" CDS join(369734..371681,371898..372511) /locus_tag="TCM_021594" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG042427t1" /codon_start=1 /product="Inflorescence meristem receptor-like kinase 2 isoform 1" /protein_id="EOY07069.1" /db_xref="Phytozome:POPTR_0016s13400.1" /db_xref="TAIR:AT3G51740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HCA0" /translation="MENTCHLLNESNPLLNENVSGSEDKWNIKPRKKHVSPFVLRNKF FLFAHLFLFLLPFSALLASGQHWDGVIVTQADYQALRAIKHELVDFRGFLRSWNDSGY GACSGRWAGIKCVKGQVIAIQLPWRGLGGRISEKIGQLQALRKLSLHDNVLGGPVPWS LGFLPSLRGVYLFNNRLSGSIPPSVGNCPALQTLDLSNNSLSGTIPPSLANSTRLYRL NLSYNSLLGSIPVRLTRSPSLTILALQHNNLSGSVPDTWVGTGNSSYQLQILTLDHNF LTGAIPVTLRKLSLLEQISLGHNQISGTIPDELGTLSKLQMLDLSSNAISGSFPSSFS SLSSLVSLNLEGNRLDNQIPEGLDKLQNLTVLNLKNNRLSGQIPATIGNISGINQFDL SENNFTGEIPDSLASLTNLSHFNVSYNNLSGAVPSLLAKNFNSSSFMGNLQLCGYSTS TLCPSPAPFNPSPAPAEAPKHHHRKLSVKDIILIAVGGLLAILLILCCILLFCLLKKK ATLKQKSGKMGAVIGKTEKEVPVAGTEVESGGEMGGKLVHFDGPFVFTADDLLCATAE IMGKSNYGTAYKATLEDGNQVAVKRLREKTTKGQREFESEAAALGKIRHPNLLALRAY YLGPKGEKLLVFDYMPRGSLASFLHARGPETTIDWPTRMTIALGITRGLNYLHTQENI IHGNLTSSNILLDEQTNAHIADFGLSRLMTAAASTNVIATAGTLGYRAPELSKLKNAS TKTDVYSLGVIILELLTGKSPGEPMNGMDLPQWVASIVKEEWTNEVFDLELMRDTPTI NDELLNTLKLALHCVDPSPAARPEVQQVLQQLEEIKPEVAAGSGDDGDKVPPTTE" CDS join(369734..371681,371898..372511) /locus_tag="TCM_021594" /note="encoded by transcript variant 6; alternatively spliced; paralog of Thecc1EG042427t1" /codon_start=1 /product="Inflorescence meristem receptor-like kinase 2 isoform 1" /protein_id="EOY07070.1" /db_xref="Phytozome:POPTR_0016s13400.1" /db_xref="TAIR:AT3G51740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HCA0" /translation="MENTCHLLNESNPLLNENVSGSEDKWNIKPRKKHVSPFVLRNKF FLFAHLFLFLLPFSALLASGQHWDGVIVTQADYQALRAIKHELVDFRGFLRSWNDSGY GACSGRWAGIKCVKGQVIAIQLPWRGLGGRISEKIGQLQALRKLSLHDNVLGGPVPWS LGFLPSLRGVYLFNNRLSGSIPPSVGNCPALQTLDLSNNSLSGTIPPSLANSTRLYRL NLSYNSLLGSIPVRLTRSPSLTILALQHNNLSGSVPDTWVGTGNSSYQLQILTLDHNF LTGAIPVTLRKLSLLEQISLGHNQISGTIPDELGTLSKLQMLDLSSNAISGSFPSSFS SLSSLVSLNLEGNRLDNQIPEGLDKLQNLTVLNLKNNRLSGQIPATIGNISGINQFDL SENNFTGEIPDSLASLTNLSHFNVSYNNLSGAVPSLLAKNFNSSSFMGNLQLCGYSTS TLCPSPAPFNPSPAPAEAPKHHHRKLSVKDIILIAVGGLLAILLILCCILLFCLLKKK ATLKQKSGKMGAVIGKTEKEVPVAGTEVESGGEMGGKLVHFDGPFVFTADDLLCATAE IMGKSNYGTAYKATLEDGNQVAVKRLREKTTKGQREFESEAAALGKIRHPNLLALRAY YLGPKGEKLLVFDYMPRGSLASFLHARGPETTIDWPTRMTIALGITRGLNYLHTQENI IHGNLTSSNILLDEQTNAHIADFGLSRLMTAAASTNVIATAGTLGYRAPELSKLKNAS TKTDVYSLGVIILELLTGKSPGEPMNGMDLPQWVASIVKEEWTNEVFDLELMRDTPTI NDELLNTLKLALHCVDPSPAARPEVQQVLQQLEEIKPEVAAGSGDDGDKVPPTTE" CDS join(369734..371681,371898..372511) /locus_tag="TCM_021594" /note="encoded by transcript variant 7; alternatively spliced; paralog of Thecc1EG042427t1" /codon_start=1 /product="Inflorescence meristem receptor-like kinase 2 isoform 1" /protein_id="EOY07071.1" /db_xref="Phytozome:POPTR_0016s13400.1" /db_xref="TAIR:AT3G51740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HCA0" /translation="MENTCHLLNESNPLLNENVSGSEDKWNIKPRKKHVSPFVLRNKF FLFAHLFLFLLPFSALLASGQHWDGVIVTQADYQALRAIKHELVDFRGFLRSWNDSGY GACSGRWAGIKCVKGQVIAIQLPWRGLGGRISEKIGQLQALRKLSLHDNVLGGPVPWS LGFLPSLRGVYLFNNRLSGSIPPSVGNCPALQTLDLSNNSLSGTIPPSLANSTRLYRL NLSYNSLLGSIPVRLTRSPSLTILALQHNNLSGSVPDTWVGTGNSSYQLQILTLDHNF LTGAIPVTLRKLSLLEQISLGHNQISGTIPDELGTLSKLQMLDLSSNAISGSFPSSFS SLSSLVSLNLEGNRLDNQIPEGLDKLQNLTVLNLKNNRLSGQIPATIGNISGINQFDL SENNFTGEIPDSLASLTNLSHFNVSYNNLSGAVPSLLAKNFNSSSFMGNLQLCGYSTS TLCPSPAPFNPSPAPAEAPKHHHRKLSVKDIILIAVGGLLAILLILCCILLFCLLKKK ATLKQKSGKMGAVIGKTEKEVPVAGTEVESGGEMGGKLVHFDGPFVFTADDLLCATAE IMGKSNYGTAYKATLEDGNQVAVKRLREKTTKGQREFESEAAALGKIRHPNLLALRAY YLGPKGEKLLVFDYMPRGSLASFLHARGPETTIDWPTRMTIALGITRGLNYLHTQENI IHGNLTSSNILLDEQTNAHIADFGLSRLMTAAASTNVIATAGTLGYRAPELSKLKNAS TKTDVYSLGVIILELLTGKSPGEPMNGMDLPQWVASIVKEEWTNEVFDLELMRDTPTI NDELLNTLKLALHCVDPSPAARPEVQQVLQQLEEIKPEVAAGSGDDGDKVPPTTE" CDS join(369734..371681,371898..372511) /locus_tag="TCM_021594" /note="encoded by transcript variant 8; alternatively spliced; paralog of Thecc1EG042427t1" /codon_start=1 /product="Inflorescence meristem receptor-like kinase 2 isoform 1" /protein_id="EOY07072.1" /db_xref="Phytozome:POPTR_0016s13400.1" /db_xref="TAIR:AT3G51740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HCA0" /translation="MENTCHLLNESNPLLNENVSGSEDKWNIKPRKKHVSPFVLRNKF FLFAHLFLFLLPFSALLASGQHWDGVIVTQADYQALRAIKHELVDFRGFLRSWNDSGY GACSGRWAGIKCVKGQVIAIQLPWRGLGGRISEKIGQLQALRKLSLHDNVLGGPVPWS LGFLPSLRGVYLFNNRLSGSIPPSVGNCPALQTLDLSNNSLSGTIPPSLANSTRLYRL NLSYNSLLGSIPVRLTRSPSLTILALQHNNLSGSVPDTWVGTGNSSYQLQILTLDHNF LTGAIPVTLRKLSLLEQISLGHNQISGTIPDELGTLSKLQMLDLSSNAISGSFPSSFS SLSSLVSLNLEGNRLDNQIPEGLDKLQNLTVLNLKNNRLSGQIPATIGNISGINQFDL SENNFTGEIPDSLASLTNLSHFNVSYNNLSGAVPSLLAKNFNSSSFMGNLQLCGYSTS TLCPSPAPFNPSPAPAEAPKHHHRKLSVKDIILIAVGGLLAILLILCCILLFCLLKKK ATLKQKSGKMGAVIGKTEKEVPVAGTEVESGGEMGGKLVHFDGPFVFTADDLLCATAE IMGKSNYGTAYKATLEDGNQVAVKRLREKTTKGQREFESEAAALGKIRHPNLLALRAY YLGPKGEKLLVFDYMPRGSLASFLHARGPETTIDWPTRMTIALGITRGLNYLHTQENI IHGNLTSSNILLDEQTNAHIADFGLSRLMTAAASTNVIATAGTLGYRAPELSKLKNAS TKTDVYSLGVIILELLTGKSPGEPMNGMDLPQWVASIVKEEWTNEVFDLELMRDTPTI NDELLNTLKLALHCVDPSPAARPEVQQVLQQLEEIKPEVAAGSGDDGDKVPPTTE" CDS join(369734..371681,371898..372233,372405..372511) /locus_tag="TCM_021594" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042427t1" /codon_start=1 /product="Inflorescence meristem receptor-like kinase 2 isoform 2" /protein_id="EOY07066.1" /db_xref="Phytozome:POPTR_0016s13400.1" /db_xref="TAIR:AT3G51740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HCA0" /translation="MENTCHLLNESNPLLNENVSGSEDKWNIKPRKKHVSPFVLRNKF FLFAHLFLFLLPFSALLASGQHWDGVIVTQADYQALRAIKHELVDFRGFLRSWNDSGY GACSGRWAGIKCVKGQVIAIQLPWRGLGGRISEKIGQLQALRKLSLHDNVLGGPVPWS LGFLPSLRGVYLFNNRLSGSIPPSVGNCPALQTLDLSNNSLSGTIPPSLANSTRLYRL NLSYNSLLGSIPVRLTRSPSLTILALQHNNLSGSVPDTWVGTGNSSYQLQILTLDHNF LTGAIPVTLRKLSLLEQISLGHNQISGTIPDELGTLSKLQMLDLSSNAISGSFPSSFS SLSSLVSLNLEGNRLDNQIPEGLDKLQNLTVLNLKNNRLSGQIPATIGNISGINQFDL SENNFTGEIPDSLASLTNLSHFNVSYNNLSGAVPSLLAKNFNSSSFMGNLQLCGYSTS TLCPSPAPFNPSPAPAEAPKHHHRKLSVKDIILIAVGGLLAILLILCCILLFCLLKKK ATLKQKSGKMGAVIGKTEKEVPVAGTEVESGGEMGGKLVHFDGPFVFTADDLLCATAE IMGKSNYGTAYKATLEDGNQVAVKRLREKTTKGQREFESEAAALGKIRHPNLLALRAY YLGPKGEKLLVFDYMPRGSLASFLHARGPETTIDWPTRMTIALGITRGLNYLHTQENI IHGNLTSSNILLDEQTNAHIADFGLSRLMTAAASTNVIATAGTLGYRAPELSKLKNAS TKTDVYSLGVIILELLTGKSPARPEVQQVLQQLEEIKPEVAAGSGDDGDKVPPTTE" gene 372967..375701 /locus_tag="TCM_021595" /note="dbxref CacaoGD:Thecc1EG021595" mRNA join(372967..373987,374082..374167,375365..375425, 375523..375701) /locus_tag="TCM_021595" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29820.m001009" /inference="similar to AA sequence:ricco:29820.m001009" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc728t3" CDS join(373115..373987,374082..374138) /locus_tag="TCM_021595" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29820.m001009" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY07073.1" /db_xref="TAIR:AT3G08780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RY09" /translation="MDDLVLQKIAISGPTLASMIQRLSSSPADVDGLLFGHVTYIAPS TLPDDSAQTPPDSQLVATISSFLSFPSLLSFYDSLGRVDSSSLTPHLDHKSIIGWFSS RRKTPLRPSVREFSVSRSLSSIPNLSLPVQDANFNSHFSPSIFLLFTTPIQDQFVQTN QYRAFQFQSAKLRFNPVSIDIVNIGPAFRGHYGSFSPNSALPFLNCELRSLTAMNEDR TEEKLTGMKQAAKDQSELDMCTEGMQIGRLSRLIGPEAVNYTAGLEDLYQKMLSKIES LARLVETSSAKVLEQESHNRKLRYKVARSTGVE" mRNA join(<373308..373987,374082..374167,375367..375465) /locus_tag="TCM_021595" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29820.m001009" /inference="similar to AA sequence:ricco:29820.m001009" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00248t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc728t3" CDS join(<373310..373987,374082..374138) /locus_tag="TCM_021595" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29820.m001009" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY07074.1" /db_xref="TAIR:AT3G08780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RY09" /translation="FLSFPSLLSFYDSLGRVDSSSLTPHLDHKSIIGWFSSRRKTPLR PSVREFSVSRSLSSIPNLSLPVQDANFNSHFSPSIFLLFTTPIQDQFVQTNQYRAFQF QSAKLRFNPVSIDIVNIGPAFRGHYGSFSPNSALPFLNCELRSLTAMNEDRTEEKLTG MKQAAKDQSELDMCTEGMQIGRLSRLIGPEAVNYTAGLEDLYQKMLSKIESLARLVET SSAKVLEQESHNRKLRYKVARSTGVE" gene 375235..378771 /locus_tag="TCM_021596" /note="dbxref CacaoGD:Thecc1EG021596" mRNA join(375235..375425,375623..376375,376522..376645, 376738..378771) /locus_tag="TCM_021596" /product="Uncharacterized protein" /inference="similar to AA sequence:Phytozome:Glyma07g19220.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.78 coverage; weak similarity to Integrase-type DNA-binding superfamily protein; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g200t1" CDS join(376157..376375,376522..376645,376738..378521) /locus_tag="TCM_021596" /note="weak similarity to Integrase-type DNA-binding superfamily protein" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07075.1" /db_xref="Phytozome:Glyma07g19220.1" /db_xref="TAIR:AT2G40340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6T1B3" /translation="MIDKAAVISTTKSSKKKMVFNTTSRIRIWSTALKTEPCKRKTIL PRQENDGIYVGRGLATSHRSAYDPYKRRHGINVGYFSYPPDGVVTHINTQNKRKLKGT TCKATGCLRLFMSMSSPMIRNSGSSVMEDGVRARNKKPRRRRNGRESVEDTIEKWKKY NNDQLQLGEEVGLKKVGKVPAKGSKKGCMQGKGGPENSRCKYRGVRQRIWGKWVAEIR QPINGVRVGNKGNNRLWLGTFSNAIEAALAYDKAAKAMYGPYARLNFPDHSEESAVHN SNNESASSTNETCSTESTSISNSFAEKAKESSVHYSSPVEEPELHVVEESKVCLVDKP MEKRDCSQVYINEEAGCIAEDTATETRGTEYNSRNDCKPYKEQGVEVETLKEAMDHEL TELMRLHNDTNDYLHNELKDEGCQLSINFLDSDDYNLQTPFKKKEMESEVELSQNMLS SAYSGFNFRPNYMDNEEQDAGISIIDLEPSNDVKVEMPVTRENWKCELAGSIESIDYN IFSGKDDNLQTELTGGNLSLGFCYKPSSEMKAEAPVLMEEVEVEHGGFTDFNSYKGFG KTYDHMPYEPTDMICERQMNATTPTDFKAQTPINYGGFNSFKDKLDFLHSWPAEAITD VKPFALIRNDNCGLRPKESYNSDQFESSSTSYPERGGLQDPIAEAQGGFNQYETGFGE DYKLEFSRPDVDLDLGTDLWFPEHGF" gene complement(378657..385252) /locus_tag="TCM_021597" /note="dbxref CacaoGD:Thecc1EG021597" mRNA complement(join(378657..379273,379401..379522, 379632..379727,381743..381859,381955..382026, 382183..382346,382901..383001,383124..383220, 383793..383928,384034..384176,384274..384411, 384498..384619,384734..385252)) /locus_tag="TCM_021597" /product="MATE efflux family protein 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01030279001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046712t1" /inference="similar to AA sequence:Phytozome:GSVIVT01030279001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g190t3" mRNA complement(join(378849..379168,379401..379523, 379632..379727,381743..381859,381955..382029, 382183..382346,382901..383001,383124..383220, 383793..383928,384034..384176,384274..384411, 384498..384619,384734..385140)) /locus_tag="TCM_021597" /product="MATE efflux family protein 2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01030279001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046712t1" /inference="similar to AA sequence:Phytozome:GSVIVT01030279001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g190t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g190t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1497t2" CDS complement(join(379100..379168,379401..379523, 379632..379727,381743..381859,381955..382029, 382183..382346,382901..383001,383124..383220, 383793..383928,384034..384176,384274..384411, 384498..384619,384734..385005)) /locus_tag="TCM_021597" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG046712t1" /codon_start=1 /product="MATE efflux family protein 2 isoform 2" /protein_id="EOY07077.1" /db_xref="Phytozome:GSVIVT01030279001" /db_xref="TAIR:AT2G38330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q84K71" /translation="MAATLSHFRSKFNAAKHPFLKPHKLSRNRSFSLCTPILPKSSKH KNSTTSLKTSPQQQNVQPEKSRSRLPSKPVGIADSDPTSSLLFRRLRDGFKIDELGLE ILSIALPAALALAADPIASLVDTAFVGHLGSVELAAVGVSVSIFNLVSKLFNVPLLNI TTSFVAEEQALIGKNSNDGEFEHQGKKVLPSVSTSLALAAGLGIAEAVALSVGSGFLL NIMGIPVDSPMRGPAEQFLSWRAFGAPPIVIALAAQGTFRGFKDTKTPLYAIGAGNLL NAILDAILIFPIGFGVGGAAVATVTSEYLIAIILLWELNGKVVLISPSVDWRKVALYI KSGGLLIVRTIATLGTLTLATSLAARQGPIPMAGHQICIQVWLAVSLLTDALALSGQQ ALLATDYSQENYQQARRVIYSVLLIGLGTGFSLAVFLFLGFGAFSGLFSTDSEVLQIA LSGTLFVASSQPVNAIAFVLDGLYYGVSDYEYAAVSMGSSRINLISVPTCGCSCVQSC WSLDRLISLHGFACGSWNLEFQMLNAFRVDMGKWWRWQKYHS" CDS complement(join(379210..379273,379401..379522, 379632..379727,381743..381859,381955..382026, 382183..382346,382901..383001,383124..383220, 383793..383928,384034..384176,384274..384411, 384498..384619,384734..385005)) /locus_tag="TCM_021597" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG046712t1" /codon_start=1 /product="MATE efflux family protein 2 isoform 1" /protein_id="EOY07076.1" /db_xref="Phytozome:GSVIVT01030279001" /db_xref="TAIR:AT2G38330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q84K71" /translation="MAATLSHFRSKFNAAKHPFLKPHKLSRNRSFSLCTPILPKSSKH KNSTTSLKTSPQQQNVQPEKSRSRLPSKPVGIADSDPTSSLLFRRLRDGFKIDELGLE ILSIALPAALALAADPIASLVDTAFVGHLGSVELAAVGVSVSIFNLVSKLFNVPLLNI TTSFVAEEQALIGKNSNDGEFEHQGKKVLPSVSTSLALAAGLGIAEAVALSVGSGFLL NIMGIPVDSPMRGPAEQFLSWRAFGAPPIVIALAAQGTFRGFKDTKTPLYAIGAGNLL NAILDAILIFPIGFGVGGAAVATVTSEYLIAIILLWELNGKVVLISPSVDWRKVALYI KSGGLLIVRTIATLGTLTLATSLAARQGPIPMAGHQICIQVWLAVSLLTDALALSGQA LLATDYSQENYQQARRVIYSVLLIGLGTGFSLAVFLFLGFGAFSGLFSTDSEVLQIAL SGTLFVASSQPVNAIAFVLDGLYYGVSDYEYAAVSMVLVGLISSAFLLVAAPVFSLAG VWTGLFLFMALRVVAGIWRLGTKTGPWKMIYSDMESRNG" gene 379699..381590 /locus_tag="TCM_021598" /note="dbxref CacaoGD:Thecc1EG021598" mRNA 379699..381590 /locus_tag="TCM_021598" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s01875.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036128t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s01875.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1485t8" CDS 380383..381057 /locus_tag="TCM_021598" /note="paralog of Thecc1EG036128t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07078.1" /db_xref="Phytozome:POPTR_0012s01875.1" /translation="MVFYAISWSVWLQRNEVVFRGVNWDANQVWENSKLRVAVWAKAK WPHKNGSTIDTYRNPSLGAAITQLKQGRKANGWATPAPREMKFNVDEATKGSPGESGI GGVMRDEHGHIKIMFSKSIGVGDANLAEIIAIREAFILFIASKWGQTKSLIIERDSSN AVKWVNQPTKGPWRLQKWILHVERLKREVISWQINHTFGGNNQLADRLAKAGIQRVQD LINELD" gene complement(385737..387684) /locus_tag="TCM_021599" /note="dbxref CacaoGD:Thecc1EG021599" mRNA complement(join(385737..386267,386873..387684)) /locus_tag="TCM_021599" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g192t4" CDS complement(385780..386121) /locus_tag="TCM_021599" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07079.1" /translation="MNNLNLLIQGIADILSCIGRKSSEKLPCPLFVFVFLFNKREHIV HELLTTMCTNSCKQSEFCLSVTMVHPCNWNNRVTLAFEFLSFYYYCYYYHLRKKFVGF QNFCLFFPDKN" gene 389117..391151 /locus_tag="TCM_021600" /note="dbxref CacaoGD:Thecc1EG021600" mRNA join(389117..389651,389840..390283,390452..390509, 390884..391151) /locus_tag="TCM_021600" /product="Uncharacterized protein isoform 1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is none, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc827t1" mRNA join(389492..389651,389840..390562) /locus_tag="TCM_021600" /product="Uncharacterized protein isoform 1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g196t2; alternateUTRof:Thecc1EG021600t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc827t1" mRNA join(389838..390509,390884..391151) /locus_tag="TCM_021600" /product="Uncharacterized protein isoform 1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc827t3; alternateUTRof:Thecc1EG021600t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc827t1" CDS 389874..390254 /locus_tag="TCM_021600" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY07080.1" /translation="MLIRKGARRAFWSKYNPFEPNGHVPWKQKSSFWGLENFNDATCH TATGAEMVARCTFYSLVIALNLPGEGGIPVHRIKPRVNIGRLSRTHAHFLQFCQPFSK QEWVIGWVAEEVKRVKRKAPANWV" CDS 389874..390254 /locus_tag="TCM_021600" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY07081.1" /translation="MLIRKGARRAFWSKYNPFEPNGHVPWKQKSSFWGLENFNDATCH TATGAEMVARCTFYSLVIALNLPGEGGIPVHRIKPRVNIGRLSRTHAHFLQFCQPFSK QEWVIGWVAEEVKRVKRKAPANWV" CDS 389874..390254 /locus_tag="TCM_021600" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY07082.1" /translation="MLIRKGARRAFWSKYNPFEPNGHVPWKQKSSFWGLENFNDATCH TATGAEMVARCTFYSLVIALNLPGEGGIPVHRIKPRVNIGRLSRTHAHFLQFCQPFSK QEWVIGWVAEEVKRVKRKAPANWV" mobile_element 391137..391206 /note="source:CACAO_M_E44848_F172_scaffold_6 1922 1962" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 391152..391213 /note="source:scaffold_9_CACTA_0936 4284 4345" /mobile_element_type="transposon:TIR/CACTA" gene 392745..400368 /locus_tag="TCM_021601" /note="dbxref CacaoGD:Thecc1EG021601" mRNA join(392745..393167,393245..393478,393707..394750, 394829..394953,395044..395198,395419..395541, 395630..395827,395906..395987,396081..396161, 396233..396308,396421..396532,396618..396689, 397297..397492,397568..397750,397954..398096, 398161..398223,398318..398528,399108..399275, 399362..400225) /locus_tag="TCM_021601" /product="BREAST CANCER 2 like 2A, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0014s19050.1" /inference="similar to AA sequence:ricco:29820.m001006" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1451t3" mRNA join(392953..393167,393245..393400,393707..394744, 394847..394953,395044..395198,395419..395541, 395630..395827,395906..395987,396081..396131, 396233..396308,396421..396532,396618..396689, 397297..397492,397568..397750,397954..398096, 398161..398223,398318..398528,399108..399275, 399362..399565,399860..399889) /locus_tag="TCM_021601" /product="BRCA2-like B, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0014s19050.1" /inference="similar to AA sequence:ricco:29820.m001006" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1451t3; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1451t3" mRNA join(392953..393167,393245..393400,393707..394744, 394847..394953,395044..395198,395419..395541, 395630..395827,395906..395987,396081..396131, 396233..396308,396421..396532,396618..396689, 397297..397492,397568..397750,397954..398096, 398161..398223,398359..398528,399108..399275, 399362..399565,399860..399889) /locus_tag="TCM_021601" /product="BREAST CANCER 2 like 2A, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0014s19050.1" /inference="similar to AA sequence:ricco:29820.m001006" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1451t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1451t3" CDS join(393023..393167,393245..393478,393707..394750, 394829..394953,395044..395198,395419..395541, 395630..395827,395906..395987,396081..396161, 396233..396308,396421..396532,396618..396689, 397297..397492,397568..397750,397954..398096, 398161..398223,398318..398528,399108..399275, 399362..399418) /locus_tag="TCM_021601" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29820.m001006" /codon_start=1 /product="BREAST CANCER 2 like 2A, putative isoform 1" /protein_id="EOY07083.1" /db_xref="TAIR:AT5G01630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IB91" /translation="MSTWQIFSDAGNDFRWEVSGRILPSKPDDEPNRAPVPPLPSMAD LLLQGCSKLIENGDAGVRNCPMFRTGLGKSVALKESSIAKALSILGDDDVGTAVTSSK RFSLSLFSFNNVHLAFHILILSFIWEVVPGNNGFGCSNSLFQTGSGKMVNISSAGLVR AKTLLGLEQDNEHHSFEGFQHPKKLPATNEPCGWQSFSHSEKKEGLRNTGVADFFSES RHLLNSRNGFVGSTVGSENDSTPVHSKEFDSAPKPPPIKFHTAGGRSLSVSSDALKRA RSLLGDPELGNFFGEVEEEVPPFTVSEEKFNDASSNKENHFFTSFSLQGTIKSKDTSK DFISPLKASFKQMRSIFNSEKICCGSNLIDKFDAVGKFDAVGNSNACVSTTNMPSAQK PLSNSTSEKNLVTNISLPRLGKSFGGPLADISNNIVTSQTNNKRIMTEKKRIGRSSFI SPYKRPRCSEFSTPLNKGVSFVGNALSASSDDHSCCKRTVSTKYPFQVPRVYMKEYFA VPPSACSMLECLSDQEKQIKPDNAIKYMFKDESGLSRIGAEAFYDMLAHSGASMQYIC KEWVANHYKWIVWKLVCYERCYPSKCAGKFLTISNVLEELKYRYDREVNHAHRSAIKR ILEGDASPSTMLVLCISNIQSNSEPKMETNLLITNGADNSGNAKVELTDGWYSMDAVL DVLLSKQLAAGKLFVGQKLRIWGAGLCGWVGPVSPLEVLADLKFFKEASSAISLLLNI NGTFRAHWADRLGFCKGVGTPLAFRCIKSDGGPVPWTLVGVTRIYPVLYRERLSNGGS IVRSERMESRMVQQHNQRGSVVVDHVISEYQRGVNSSHILSDSESEGAKILKILETAA EPEVLMAEMSPEQLTSFATYKSKLEATRQLEMEKSIKKALAEAGLNERDVVPFIRVRV VGLTTRKYHGKGRPKEGIITIWNPTEKQKSELVEGQAYVVAGLIPIYSDSEALYLQAR GSTTKWQPLSPMAMECFEPFFSPRKPTKLSNLGEIPLSSEFDIAVYVVYVGEVYTAAH QKKQWVFVTDDSISNLLSEGLSDSLLAISFCSPCIDKDSFAPINSNLVGSMVGFCNLI KKAKDQMNHLWVAEAAENCAYFLNLNPSICSHLKIAGACVQTWAKASNSIIDKLREKV LFILDNCGG" CDS join(393023..393167,393245..393400,393707..394744, 394847..394953,395044..395198,395419..395541, 395630..395827,395906..395987,396081..396131, 396233..396308,396421..396532,396618..396689, 397297..397492,397568..397750,397954..398096, 398161..398223,398318..398528,399108..399275, 399362..399418) /locus_tag="TCM_021601" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29820.m001006" /codon_start=1 /product="BRCA2-like B, putative isoform 2" /protein_id="EOY07084.1" /db_xref="TAIR:AT5G01630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IB91" /translation="MSTWQIFSDAGNDFRWEVSGRILPSKPDDEPNRAPVPPLPSMAD LLLQGCSKLIENGDAGVRNCPMFRTGLGKSVALKESSIAKALSILGDDDVGTAVTSRE VVPGNNGFGCSNSLFQTGSGKMVNISSAGLVRAKTLLGLEQDNEHHSFEGFQHPKKLP ATNEPCGWQSFSHSEKKEGLRNTGVADFFSESRHLLNSRNGFVGSTVGSENDSTPVHS KEFDSAPKPPPIKFHTAGGRSLSVSSDALKRARSLLGDPELGNFFGEVEEEVPPFTVS EEKFNDASSNKENHFFTSFSLQGTIKSKDTSKDFISPLKASFKQMRSIFNSEKICCGS NLIDKFDAVGKFDAVGNSNACVSTTNMPSAQKPLSNSTSEKNLVTNISLPRLGKSFGG PLADISNNIVTSQTNNKRIMTEKKRIGRSSFISPYKRPRCSEFSTPLNKGVSFVDDHS CCKRTVSTKYPFQVPRVYMKEYFAVPPSACSMLECLSDQEKQIKPDNAIKYMFKDESG LSRIGAEAFYDMLAHSGASMQYICKEWVANHYKWIVWKLVCYERCYPSKCAGKFLTIS NVLEELKYRYDREVNHAHRSAIKRILEGDASPSTMLVLCISNIQSNSEPKMETNLLIT NGADNSGNAKVELTDGWYSMDAVLDVLLSKQLAAGKLFVGQKLRIWGAGLCGWVGPVS PLEASSAISLLLNINGTFRAHWADRLGFCKGVGTPLAFRCIKSDGGPVPWTLVGVTRI YPVLYRERLSNGGSIVRSERMESRMVQQHNQRGSVVVDHVISEYQRGVNSSHILSDSE SEGAKILKILETAAEPEVLMAEMSPEQLTSFATYKSKLEATRQLEMEKSIKKALAEAG LNERDVVPFIRVRVVGLTTRKYHGKGRPKEGIITIWNPTEKQKSELVEGQAYVVAGLI PIYSDSEALYLQARGSTTKWQPLSPMAMECFEPFFSPRKPTKLSNLGEIPLSSEFDIA VYVVYVGEVYTAAHQKKQWVFVTDDSISNLLSEGLSDSLLAISFCSPCIDKDSFAPIN SNLVGSMVGFCNLIKKAKDQMNHLWVAEAAENCAYFLNLNPSICSHLKIAGACVQTWA KASNSIIDKLREKVLFILDNCGG" CDS join(393023..393167,393245..393400,393707..394744, 394847..394953,395044..395198,395419..395541, 395630..395827,395906..395987,396081..396131, 396233..396308,396421..396532,396618..396689, 397297..397492,397568..397750,397954..398096, 398161..398223,398359..398407) /locus_tag="TCM_021601" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29820.m001006" /codon_start=1 /product="BREAST CANCER 2 like 2A, putative isoform 3" /protein_id="EOY07085.1" /db_xref="TAIR:AT5G01630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IB91" /translation="MSTWQIFSDAGNDFRWEVSGRILPSKPDDEPNRAPVPPLPSMAD LLLQGCSKLIENGDAGVRNCPMFRTGLGKSVALKESSIAKALSILGDDDVGTAVTSRE VVPGNNGFGCSNSLFQTGSGKMVNISSAGLVRAKTLLGLEQDNEHHSFEGFQHPKKLP ATNEPCGWQSFSHSEKKEGLRNTGVADFFSESRHLLNSRNGFVGSTVGSENDSTPVHS KEFDSAPKPPPIKFHTAGGRSLSVSSDALKRARSLLGDPELGNFFGEVEEEVPPFTVS EEKFNDASSNKENHFFTSFSLQGTIKSKDTSKDFISPLKASFKQMRSIFNSEKICCGS NLIDKFDAVGKFDAVGNSNACVSTTNMPSAQKPLSNSTSEKNLVTNISLPRLGKSFGG PLADISNNIVTSQTNNKRIMTEKKRIGRSSFISPYKRPRCSEFSTPLNKGVSFVDDHS CCKRTVSTKYPFQVPRVYMKEYFAVPPSACSMLECLSDQEKQIKPDNAIKYMFKDESG LSRIGAEAFYDMLAHSGASMQYICKEWVANHYKWIVWKLVCYERCYPSKCAGKFLTIS NVLEELKYRYDREVNHAHRSAIKRILEGDASPSTMLVLCISNIQSNSEPKMETNLLIT NGADNSGNAKVELTDGWYSMDAVLDVLLSKQLAAGKLFVGQKLRIWGAGLCGWVGPVS PLEASSAISLLLNINGTFRAHWADRLGFCKGVGTPLAFRCIKSDGGPVPWTLVGVTRI YPVLYRERLSNGGSIVRSERMESRMVQQHNQRGSVVVDHVISEYQRGVNSSHILSDSE SEGAKILKILETAAEPEVLMAEMSPEQLTSFATYKSKLEATRQLEMEKSIKKALAEAG LNERDVVPFIRVRVVGLTTRKYHGKGRPKEGIITIWNPTEKQKSELVEGQAYVVAGLI PIYSDSEALYLQARGSTTKWQPLSPMAMECFEPFFSPRKPTKLSNLGEIPLSSLYGCS SKETVGVCDR" mRNA join(393967..394744,394847..394953,395044..395198, 395419..395541,395630..395827,395906..395987, 396081..396131,396233..396308,396421..396532, 396618..396689,397297..397492,397568..397750, 397954..398096,398161..398223,398318..398528, 399108..399275,399362..399565,399860..400368) /locus_tag="TCM_021601" /product="BRCA2-like B, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0014s19050.1" /inference="similar to AA sequence:Phytozome:GSVIVT01030280001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1451t3; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1451t3" CDS join(394366..394744,394847..394953,395044..395198, 395419..395541,395630..395827,395906..395987, 396081..396131,396233..396308,396421..396532, 396618..396689,397297..397492,397568..397750, 397954..398096,398161..398223,398318..398528, 399108..399275,399362..399418) /locus_tag="TCM_021601" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="BRCA2-like B, putative isoform 4" /protein_id="EOY07086.1" /db_xref="Phytozome:GSVIVT01030280001" /db_xref="TAIR:AT5G01630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IB91" /translation="MRSIFNSEKICCGSNLIDKFDAVGKFDAVGNSNACVSTTNMPSA QKPLSNSTSEKNLVTNISLPRLGKSFGGPLADISNNIVTSQTNNKRIMTEKKRIGRSS FISPYKRPRCSEFSTPLNKGVSFVDDHSCCKRTVSTKYPFQVPRVYMKEYFAVPPSAC SMLECLSDQEKQIKPDNAIKYMFKDESGLSRIGAEAFYDMLAHSGASMQYICKEWVAN HYKWIVWKLVCYERCYPSKCAGKFLTISNVLEELKYRYDREVNHAHRSAIKRILEGDA SPSTMLVLCISNIQSNSEPKMETNLLITNGADNSGNAKVELTDGWYSMDAVLDVLLSK QLAAGKLFVGQKLRIWGAGLCGWVGPVSPLEASSAISLLLNINGTFRAHWADRLGFCK GVGTPLAFRCIKSDGGPVPWTLVGVTRIYPVLYRERLSNGGSIVRSERMESRMVQQHN QRGSVVVDHVISEYQRGVNSSHILSDSESEGAKILKILETAAEPEVLMAEMSPEQLTS FATYKSKLEATRQLEMEKSIKKALAEAGLNERDVVPFIRVRVVGLTTRKYHGKGRPKE GIITIWNPTEKQKSELVEGQAYVVAGLIPIYSDSEALYLQARGSTTKWQPLSPMAMEC FEPFFSPRKPTKLSNLGEIPLSSEFDIAVYVVYVGEVYTAAHQKKQWVFVTDDSISNL LSEGLSDSLLAISFCSPCIDKDSFAPINSNLVGSMVGFCNLIKKAKDQMNHLWVAEAA ENCAYFLNLNPSICSHLKIAGACVQTWAKASNSIIDKLREKVLFILDNCGG" gene 399926..402222 /locus_tag="TCM_021602" /note="dbxref CacaoGD:Thecc1EG021602" mRNA join(399926..399951,400657..400764,400883..401096, 401171..401504,401576..402222) /locus_tag="TCM_021602" /product="Brassinosteroid signaling positive regulator family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s13350.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s13350.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1453t2" CDS join(401199..401504,401576..401776) /locus_tag="TCM_021602" /codon_start=1 /product="Brassinosteroid signaling positive regulator family protein" /protein_id="EOY07087.1" /db_xref="Phytozome:POPTR_0016s13350.1" /translation="MAGEKKTTLRGCIKKSKGPWIVHRATKDGGIVTRYRFPTENERQ KNKQRERRRRAVAQNIFAGLKEHGNYKLPKHADANDLLKALCQEAGWHVEEDGTIYRK KTVSSTMAASVENGEAKDQDYCTCNDHGNVLPASGTFLSVGQSQECSGINLVLSLSVS NSLTRNVS" gene complement(401982..405830) /locus_tag="TCM_021603" /note="dbxref CacaoGD:Thecc1EG021603" mRNA complement(join(401982..402956,403842..403994, 404086..404282,404511..404682,405050..405332, 405495..405830)) /locus_tag="TCM_021603" /product="Trichome birefringence-like 35 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g06340.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021604t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s13340.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05947t00001" mRNA complement(join(402327..402957,404510..404682, 405050..405332,405495..405827)) /locus_tag="TCM_021603" /product="Trichome birefringence-like 35 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g06340.1" /inference="similar to AA sequence:ricco:29820.m001004" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc897t1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc897t1; inference alignment:Newbler:10:TSA:cgbaP2_g05947t00001" CDS complement(join(402626..402956,403842..403994, 404086..404282,404511..404682,405050..405332, 405495..405693)) /locus_tag="TCM_021603" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG021604t1" /codon_start=1 /product="Trichome birefringence-like 35 isoform 1" /protein_id="EOY07088.1" /db_xref="Phytozome:POPTR_0016s13340.1" /db_xref="TAIR:AT5G01620.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K9F9" /translation="MSVTPRWSRKKPHIPLLAVLLLVFIACSILYNEFSIQQIHESPD HAPHSQETSFTYVKPNLPKGASEVLDRFSSCNTTRNYSGKKIQWVDPDAKSGRRSRVN QESCDVFSGKWVFDNTSYPLYKESDCPYMSDQLACHKHGRSDLQYQYWRWQPRNCNLK RWNATEMWEKLRGKRLMFVGDSLNRGQWISMVCLLQSVIPANKRSISPNAELTIFRAE EYNATVEFLWAPLLVESNSDDPVNHRLAERIIRPDSVLKHSSQWEHADILIFNSYLWW RQGPVKLLWSAEENGACEELNGVGGMELAMGAWADWVASNVIPLKKRVFFVTMSPTHF WSQEWESGSDGNCYNQMTPITLEGYWGSGSDLPTMRMVDKVLSRLGSKVSVINITQLS EYRKDGHPSIYRKFWETLSPQQLANPASYSDCIHWCLPGVPDVWNELIFHFL" CDS complement(join(402626..402957,404510..404682, 405050..405332,405495..405693)) /locus_tag="TCM_021603" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29820.m001004" /codon_start=1 /product="Trichome birefringence-like 35 isoform 2" /protein_id="EOY07089.1" /db_xref="TAIR:AT5G01620.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K9F9" /translation="MSVTPRWSRKKPHIPLLAVLLLVFIACSILYNEFSIQQIHESPD HAPHSQETSFTYVKPNLPKGASEVLDRFSSCNTTRNYSGKKIQWVDPDAKSGRRSRVN QESCDVFSGKWVFDNTSYPLYKESDCPYMSDQLACHKHGRSDLQYQYWRWQPRNCNLK RWNATEMWEKLRGKRLMFVGDSLNRGQWISMVCLLQSVIPANKRSISPNAELTIFRAE GSQEWESGSDGNCYNQMTPITLEGYWGSGSDLPTMRMVDKVLSRLGSKVSVINITQLS EYRKDGHPSIYRKFWETLSPQQLANPASYSDCIHWCLPGVPDVWNELIFHFL" gene complement(406465..408712) /locus_tag="TCM_021604" /note="dbxref CacaoGD:Thecc1EG021604" mRNA complement(join(406465..407066,407167..407328, 407427..407623,407759..407930,408085..408712)) /locus_tag="TCM_021604" /product="Trichome birefringence-like 34" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s13330.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021603t1" /inference="similar to AA sequence:Phytozome:GSVIVT01030284001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g205t1" CDS complement(join(406718..407066,407167..407328, 407427..407623,407759..407930,408085..408473)) /locus_tag="TCM_021604" /note="paralog of Thecc1EG021603t1" /codon_start=1 /product="Trichome birefringence-like 34" /protein_id="EOY07090.1" /db_xref="Phytozome:GSVIVT01030284001" /db_xref="TAIR:AT2G38320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SR66" /translation="MGEPSQTHKAERGENMAKKQQAMVSAAWDIRTSFQSLVALLIAI LVVAAIYLRQTNEQLFESGTTLSGGSLTSRCNLFSGKWVYDNESYPLYKERECTFMSD QLACEKFGRKDLNYRFWRWQPHQCDLPRFNATALLERLRNKRLVFVGDSLNRNQWISM VCLVDSAIPPAFKSMHNNGSINIFKATEYNATIEFYWSPLLVESNSDDPVNHRVPNRI VRVQAIEKHARHWTDADILIFNTYLWWRRRQMNVLWGSFENPEDGIYKAVMLPRVYEM ALQTWAQWLEVHVNRNTTQLFFISMSPTHQRADRWGGIQGENCYSETEPVSKEGYVGD GASPRMMRAVDSVLGELKTRGLNVHMMNITQLSDYRKEGHPSIYRKHWETITEEQLSN PKNYSDCIHWCLPGVPDVWNELLYAYILQL" mobile_element complement(410482..410563) /note="source:CACAO_M_S_E51240_F74_scaffold_4 2247 2322" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(411948..412962) /locus_tag="TCM_021605" /note="dbxref CacaoGD:Thecc1EG021605" mRNA complement(411948..412962) /locus_tag="TCM_021605" /product="Polyketide cyclase/dehydrase and lipid transport superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s13320.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042432t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s13320.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1412t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g12934t1" CDS complement(412255..412911) /locus_tag="TCM_021605" /note="paralog of Thecc1EG042432t1" /codon_start=1 /product="Polyketide cyclase/dehydrase and lipid transport superfamily protein" /protein_id="EOY07091.1" /db_xref="Phytozome:POPTR_0016s13320.1" /db_xref="TAIR:AT2G38310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IGH2" /translation="MPVNPPKSSLLLHRINNTTPNTNSTTTTTTATADNSSMFCQKRY PLTCTTPVPDTVARHHTHPVGPNQCCSAVVQQIAAPVSTVWSVVRRFDNPQAYKHFVK SCHVIVGDGEVGTLREIHVISGLPAGRSTERLEILDDERHVLSFSVVGGDHRLANYRS VTTLHPSTAGNGTVVVESYVVDVPPGNTKDDTCVFVDTIVRCNLQSLAQIAENLARRK " gene 415866..418245 /locus_tag="TCM_021606" /note="dbxref CacaoGD:Thecc1EG021606" mRNA join(415866..416081,416874..416928,417615..418245) /locus_tag="TCM_021606" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01030288001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014119t1" /inference="similar to AA sequence:Phytozome:GSVIVT01030288001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g06983t00001" CDS join(415995..416081,416874..416928,417615..417985) /locus_tag="TCM_021606" /note="paralog of Thecc1EG014119t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07092.1" /db_xref="Phytozome:GSVIVT01030288001" /db_xref="TAIR:AT3G08890.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FHW0" /translation="MDQILNKVGSYWLGQKANKEINSVGDDINSLSTSIEGGAKWLVN KIKGKMQKPLQELLKEYNLPIGIFPRDATNYEFNEETGKLTVFIPTVCEVGFKDSSVL RFFTTVTAYLEKGKLADIEGMKTKVVIWVKVTSITSDGSKLYVTAGMKKSRNREAYEV SRDGVSVDKF" mobile_element complement(418541..418613) /note="source:scaffold_1_CACTA_0032 2772 2844" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(418678..418756) /note="source:scaffold_6_CACTA_0709 2599 2684" /mobile_element_type="transposon:TIR/CACTA" gene complement(418796..420654) /locus_tag="TCM_021607" /note="dbxref CacaoGD:Thecc1EG021607" mRNA complement(join(418796..419378,419682..420542)) /locus_tag="TCM_021607" /product="Mitochondrial substrate carrier family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29820.m000998" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042220t1" /inference="similar to AA sequence:ricco:29820.m000998" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc3397t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g211t2" mRNA complement(join(418981..419398,419693..420654)) /locus_tag="TCM_021607" /product="Mitochondrial substrate carrier family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29820.m000998" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042220t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s13300.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g211t2" CDS complement(join(419198..419398,419693..420463)) /locus_tag="TCM_021607" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042220t1" /codon_start=1 /product="Mitochondrial substrate carrier family protein isoform 1" /protein_id="EOY07093.1" /db_xref="Phytozome:POPTR_0016s13300.1" /db_xref="TAIR:AT1G07030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LMJ6" /translation="MATDASPQYRPVPLPPEFHSDISPSHPPTHDGLHFWQFMIAGSI AGTVEHMAMFPVDTLKTRMQAIGASCSVQPIGVRQALGSILKLEGPSGLYRGIAAMGL GAGPAHAVYFSVYELSKQALSRGDPNNSMVHAASGVVATVTSDAVFTPMDMVKQRLQL KSSPYKGVADCVRRVLMEEGIGAFYASYRTTVVMNAPFTAVHFATYEAAKRGLMEVSP DSTDDERLAVHATAGAAAGALAAAVTTPLDVVKTQLQCQGVCGCDRFSSSSIGNVIRT IVKKDGYRGLMRGWIPRMLFHAPAAAICWSTYEASKTFFQELNSSYN" CDS complement(join(419198..419378,419682..420463)) /locus_tag="TCM_021607" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29820.m000998; paralog of Thecc1EG042220t1" /codon_start=1 /product="Mitochondrial substrate carrier family protein isoform 2" /protein_id="EOY07094.1" /db_xref="TAIR:AT1G07030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LMJ6" /translation="MATDASPQYRPVPLPPEFHSDISPSHPPTHDGLHFWQFMIAGSI AGTVEHMAMFPVDTLKTRMQAIGASCSVQPIGVRQALGSILKLEGPSGLYRGIAAMGL GAGPAHAVYFSVYELSKQALSRGDPNNSMVHAASGVVATVTSDAVFTPMDMVKQRLQL KSSPYKGVADCVRRVLMEEGIGAFYASYRTTVVMNAPFTAVHFATYEAAKRGLMEVSP DSTDDERLAVHATAGAAAGALAAAVTTPLDVVKTQLQCQVNSLFSSSSIGNVIRTIVK KDGYRGLMRGWIPRMLFHAPAAAICWSTYEASKTFFQELNSSYN" mobile_element 420959..421223 /note="source:scaffold_4_CACTA_0511 3139 3363" /mobile_element_type="transposon:TIR/CACTA" gene 423531..426000 /locus_tag="TCM_021608" /note="dbxref CacaoGD:Thecc1EG021608" mRNA join(423531..424168,424286..424369,424455..424515, 424604..424691,424898..424959,425133..425208, 425286..425342,425513..>425537) /locus_tag="TCM_021608" /product="Ferretin 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s19190.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042448t1" /inference="similar to AA sequence:frave:gene13775" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc3142t2; inference alignment:Newbler:10:TSA:cgbaP2_g00477t00001_C1" mRNA join(423757..424168,424286..424369,424455..424515, 424604..424691,424898..424959,425133..425198, 425279..425342,425513..426000) /locus_tag="TCM_021608" /product="Ferretin 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s19190.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042448t1" /inference="similar to AA sequence:frave:gene13775" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00477t00001_C1" CDS join(423834..424168,424286..424369,424455..424515, 424604..424691,424898..424959,425133..425198, 425279..425342,425513..425562) /locus_tag="TCM_021608" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene13775; paralog of Thecc1EG042448t1" /codon_start=1 /product="Ferretin 1 isoform 1" /protein_id="EOY07095.1" /db_xref="TAIR:AT5G01600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O65100" /translation="MFLRSVSSISVQTKHGDNLISSLRGSPALSSSSFGSAFPSSSAL GFPQRKPGRAFGVSASLETNDFALTGVVFQPFEEVKKKELDIPVAPQVSLARQKYTDE CEAAINEQINVEYNVSYVYHSLYAYFDRDNIALKGLAKFFKESSEEEREHAEKLMEYQ NIRGGRVKLHSILMPPSEFEHAEKGDALYAMELALSLEKLTNEKLLSLHNVAERNHDA QMSEFIEREFLSEQVEAIKKISEYVAQLRMVGKGHGVWHFDQMLLHEGDAA" CDS join(423834..424168,424286..424369,424455..424515, 424604..424691,424898..424959,425133..425208, 425286..425342,425513..>425535) /locus_tag="TCM_021608" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene13775; paralog of Thecc1EG042448t1" /codon_start=1 /product="Ferretin 1 isoform 2" /protein_id="EOY07096.1" /db_xref="TAIR:AT5G01600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O65100" /translation="MFLRSVSSISVQTKHGDNLISSLRGSPALSSSSFGSAFPSSSAL GFPQRKPGRAFGVSASLETNDFALTGVVFQPFEEVKKKELDIPVAPQVSLARQKYTDE CEAAINEQINVEYNVSYVYHSLYAYFDRDNIALKGLAKFFKESSEEEREHAEKLMEYQ NIRGGRVKLHSILMPPSEFEHAEKGDALYAMELALSLEKLTNEKLLSLHNVAERNHDA QMSEFIEREFLSEQVSSTIKKISEYVAQLRMVGKGHGVWHFDQM" gene complement(426044..426615) /locus_tag="TCM_021609" /note="dbxref CacaoGD:Thecc1EG021609" mRNA complement(join(426044..426341,426466..426615)) /locus_tag="TCM_021609" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s10470.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is medium, protein is complete; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1066t1" CDS complement(join(426172..426341,426466..426568)) /locus_tag="TCM_021609" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07097.1" /translation="MERWRGWLRFKHSVLFPTKCMLLKFTSRLRPKAKENRQVLLTLY KDMESCGEYEDIQVMWKMIHSSFPSNGHKTRRSRRPSYFRFCFKPR" gene complement(428086..430495) /locus_tag="TCM_021610" /note="dbxref CacaoGD:Thecc1EG021610" mRNA complement(join(428086..428784,428911..429008, 429357..429537,429678..429755,430409..430495)) /locus_tag="TCM_021610" /product="Ribosomal protein S4 (RPS4A) family protein" /inference="alignment:exonerate- protein:2:ricco:30128.m008716" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004680t1" /inference="similar to AA sequence:ricco:30098.m001731" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11259t00001" CDS complement(join(428356..428784,428911..429008, 429357..429537,429678..429755,430409..430411)) /locus_tag="TCM_021610" /note="dbxref ricco:30098.m001731; paralog of Thecc1EG004680t1" /codon_start=1 /product="Ribosomal protein S4 (RPS4A) family protein" /protein_id="EOY07098.1" /db_xref="TAIR:AT5G58420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P62701" /translation="MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL ILILRNRLKYALTYREVIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLL YDTKGRFRLHAITGDETKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTI KLDLESNKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDAAGHEF ATRLGNVFTIGKGTKPWVSLPKGKGIKLSVIEEARKRLAAQNAV" gene complement(430872..432455) /locus_tag="TCM_021611" /note="dbxref CacaoGD:Thecc1EG021611" mRNA complement(join(430872..430940,431450..431530, 431632..432455)) /locus_tag="TCM_021611" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01030296001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g257t1" mRNA complement(join(431254..431527,431632..432255)) /locus_tag="TCM_021611" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01030296001" /inference="similar to AA sequence:Phytozome:GSVIVT01030296001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g12822t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g257t1" CDS complement(join(431469..431527,431632..432217)) /locus_tag="TCM_021611" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY07100.1" /db_xref="Phytozome:GSVIVT01030296001" /translation="MEDVVAEAESLLHPINLSGDEVIEERQNPEAAKQEGGDRAGGFI NHLISNLVTGGDADEEKQDEQADKETIPEDKGGGILDHMISNLVTPSSPQAGNITQGK VEAFDVRSENESGFRSEEEVGGGGRGGEGLINNIVSNLFHHSEGEVRESPDENKKEEM VKVGEETKAEKTEGGGGGGGGIIENIVSHLPISLPDDAAPTSDEATILIHIAQD" CDS complement(join(431469..431530,431632..432217)) /locus_tag="TCM_021611" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY07099.1" /translation="MEDVVAEAESLLHPINLSGDEVIEERQNPEAAKQEGGDRAGGFI NHLISNLVTGGDADEEKQDEQADKETIPEDKGGGILDHMISNLVTPSSPQAGNITQGK VEAFDVRSENESGFRSEEEVGGGGRGGEGLINNIVSNLFHHSEGEVRESPDENKKEEM VKVGEETKAEKTEGGGGGGGGIIENIVSHLPISLPADDAAPTSDEATILIHIAQD" gene complement(432525..435962) /locus_tag="TCM_021612" /note="dbxref CacaoGD:Thecc1EG021612" mRNA complement(join(432525..433219,433527..433689, 433846..434128,434510..434707,435093..435962)) /locus_tag="TCM_021612" /product="TRNA pseudouridine synthase B" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01030297001" /inference="similar to AA sequence:TAIR:AT5G01590.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05351t00001" CDS complement(join(433022..433219,433527..433689, 433846..434128,434510..434707,435093..435792)) /locus_tag="TCM_021612" /codon_start=1 /product="TRNA pseudouridine synthase B" /protein_id="EOY07101.1" /db_xref="TAIR:AT5G01590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C555" /translation="MASINFNPFESWFRKPQNPIQPVNLPSLADSFLPKTSSNSPNFA SINASSLFKKKPKKPDEDSDKPGPYKQMLDQFFWECENLPDYRHTPEVENILNEDPLF EKKENPTEEEVKENEKWWQDFRSSPVVQFLARAEEIADEINRMELKENDEPYRSEDKK LWQALPHVIGLDGRPMPRKAIKTRKESDDKFWDFAKQFFFGLWGFRQRPYPPGRPIDV AQAIGYKRLEKRYYDYIMRSGGWYYKDRLGRTRGPCELITLKTAWGAGIIDKHTFIWG EDMDEWAPIHMVYGLEPAIATWEVRLGAAATAFLHKLQKGIPPWVPLKGHEKKTYKQL QEEAIESKRRDLAVLKANDGIWPGVRIPSHTLFLWASGSEMTTLLESDHMPNKYISKD LRRKLAKAIPGLRPWEVLSVEQAMDEITYGGEWYREPLGSYTTGPPYIRHWNKDVKRI FRIFYNLSSQVYNKLERTIPGFNAIMEKVQADAAARDDRRKAKREAQKKAEEAAIYGS TENDP" gene 437357..439877 /locus_tag="TCM_021613" /note="dbxref CacaoGD:Thecc1EG021613" mRNA join(437357..437831,438443..438508,438681..438818, 438908..439000,439094..439198,439305..439877) /locus_tag="TCM_021613" /product="Gamma interferon responsive lysosomal thiol reductase family protein, putative" /inference="alignment:exonerate- protein:2:ricco:29820.m000991" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042205t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s12960.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g265t2" CDS join(437580..437831,438443..438508,438681..438818, 438908..439000,439094..439198,439305..439400) /locus_tag="TCM_021613" /note="paralog of Thecc1EG042205t1" /codon_start=1 /product="Gamma interferon responsive lysosomal thiol reductase family protein, putative" /protein_id="EOY07102.1" /db_xref="Phytozome:POPTR_0016s12960.1" /db_xref="TAIR:AT5G01580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M017" /translation="MASPRFFFAFFLSTSMLFLLSISPCHAQNVTLSLYYETLCPYCA DFIVNHLVKLFDKGLNSIVNLRLVPWGNAVMQRDGNFVCQHGPDECVLNAIDACTITI YPEVERHFRFILCVERLALENKVNEWVNCFDMTGLGRVPVDCYKSGYGNMLEKHYAAE TAQLNPPHKFVPWVLVNGQPLEEDFKSFVSYVCKAYQGKLVPEACHQSLPLMNNSLKK ASLLNADTPFSITLLLIFGIHFWLLSALIEQ" gene 440267..443112 /locus_tag="TCM_021614" /note="dbxref CacaoGD:Thecc1EG021614" mRNA join(440267..440639,441419..441484,441573..441713, 441913..442005,442082..443112) /locus_tag="TCM_021614" /product="Gamma-interferon-inducible lysosomal thiol reductase, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s10390.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021615t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s10390.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g267t2" CDS join(440328..440639,441419..441484,441573..441713, 441913..442005,442082..442234) /locus_tag="TCM_021614" /note="paralog of Thecc1EG021615t1" /codon_start=1 /product="Gamma-interferon-inducible lysosomal thiol reductase, putative" /protein_id="EOY07103.1" /db_xref="Phytozome:POPTR_0006s10390.1" /db_xref="TAIR:AT1G07080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HCZ2" /translation="MLSKMAFCKLAFPVLVMACLLFPFTFPSHVSVRNDAGVKVSTSN SSQKVNVSIYYEALCVRCAKFIVNKLEDVFENGLISIINLRLVPWGASYISKSNNTII CKHGQDECQLNTIQACAIYVWPDVNKHYGLIYCIEFLAIEERQKEWESCFKSLGLPQK HILDCYNSGKGRTLELAYANETAHLSPRHAFTPWVVVNNQSIGNDYENFAAYICKAYK GNASTESCKSLPSNINSTSIAKKLTSSTPTKKMLSL" gene 443537..445236 /locus_tag="TCM_021615" /note="dbxref CacaoGD:Thecc1EG021615" mRNA join(443537..444059,444166..444231,444360..444515, 444629..444721,444797..445236) /locus_tag="TCM_021615" /product="Gamma-interferon-inducible lysosomal thiol reductase precursor, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s12980.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021616t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s10950.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g322t1" CDS join(443697..444059,444166..444231,444360..444515, 444629..444721,444797..444991) /locus_tag="TCM_021615" /note="paralog of Thecc1EG021616t1" /codon_start=1 /product="Gamma-interferon-inducible lysosomal thiol reductase precursor, putative" /protein_id="EOY07104.1" /db_xref="Phytozome:POPTR_0012s10950.1" /db_xref="TAIR:AT1G07080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I400" /translation="MEASSSTIYIPLAKGSFSIVQSYYKMANVRLFCIIVASLPFMFV SASHSSLDYDNAKTLSPAINNEKVNLSLYYETLCPYCASFISDNLVKVFQNDLDTIVN LRLVPWGNAFIVGNRTQCQHGEEECYLNTIHSCVIYLWPDVKTHFEFIDCTEKQNLKR GPVTTKEELWEPCCEKLILSEDRIKECYNSGYGNKLQRQYANETASLNPPHDYVPWVV VNNQPIRDDFVNFVKYVCQAYKGDHVPVACKAQSSNVSSAKMANKIHPGCYTTEIFRN SAPPAAAKTGPGTK" gene 445227..447171 /locus_tag="TCM_021616" /note="dbxref CacaoGD:Thecc1EG021616" mRNA join(445227..445748,445896..445961,446222..446386, 446645..446737,446817..447171) /locus_tag="TCM_021616" /product="Gamma-interferon-inducible lysosomal thiol reductase precursor, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s10920.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021615t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s10920.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g02890t00001" CDS join(445458..445748,445896..445961,446222..446386, 446645..446737,446817..447032) /locus_tag="TCM_021616" /note="paralog of Thecc1EG021615t1" /codon_start=1 /product="Gamma-interferon-inducible lysosomal thiol reductase precursor, putative" /protein_id="EOY07105.1" /db_xref="Phytozome:POPTR_0012s10920.1" /db_xref="TAIR:AT5G01580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I400" /translation="MASSQLLPFLLLSLLIILICPSHSSPENNVTESQSHSKPERVNL SLYYESLCPYCRRFIVNQLVKVFNSDLLNIINLRLVPWGNAKVVKPDKTINCQHGEDE CYLNTIHACAINIWPDLRKHFNFIYCTENQGVHIKDGQHSDGADAVWKACSARLGMDQ KLIKKCYDSGYGRKLLLQYATETNNLHPKHLYVPWVTVNNQPLFDKYENFVTYVCNAY KDKALPNACKSHSPKETEEESSIYPVCYPDSASFIPAKEIPNSAVTSLVQGKKIEAPA " gene complement(447304..449023) /locus_tag="TCM_021617" /note="dbxref CacaoGD:Thecc1EG021617" mRNA complement(join(447304..447567,447685..447758, 448375..448476,448566..448707,448814..449023)) /locus_tag="TCM_021617" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s13040.1" /inference="similar to AA sequence:TAIR:AT3G08880.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g08378t00001" CDS complement(join(447458..447567,447685..447758, 448375..448476,448566..448707,448814..448991)) /locus_tag="TCM_021617" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07106.1" /db_xref="TAIR:AT3G08880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IGF0" /translation="MGESSRMIDVEKLISYSDDLVEVLKDKRDVNNLTQCLQHLNDLH SHCDSDSKEVHRLLQEYEEKIEACKKKTEQAKSEVADGAEMESLQKELKQELEKEREL MEELRAIGNEISELDRQRVSIEERKQKLRKFEQDKLKEQRKLSMYASITNIIPDLEDK SRISGHIVDRDRKLVEKFEFDPSKMTASDVCDRIWKMINSQ" gene complement(449426..451272) /locus_tag="TCM_021618" /note="dbxref CacaoGD:Thecc1EG021618" mRNA complement(449426..451272) /locus_tag="TCM_021618" /product="GRAS family transcription factor, putative" /inference="alignment:exonerate- protein:2:ricco:29820.m000986" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042194t1" /inference="similar to AA sequence:ricco:29820.m000986" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete" CDS complement(449588..451204) /locus_tag="TCM_021618" /note="dbxref ricco:29820.m000986; paralog of Thecc1EG042194t1" /codon_start=1 /product="GRAS family transcription factor, putative" /protein_id="EOY07107.1" /translation="MMESENFPLLWPVDDFMNPTIDQFELHDLNMSAHFNGCEFSSSF TTREDSSDISSISHFSTMFSGEVFQFPACDDQLQVTVPLEDFSVVPLEGLESMLTDGI EDLYNCLDETSEESFQSLPLSSHGQDVWSPSPSVRSSEASTDVTSMQSSLTMPGVAME IDNQLSIFHLLKAYGEAREKNQTQLAEVIMRCVGEKASPVGETWERIAFSLSQSIQNQ SDYLMQESSRNFETAFRAFYQMFPYGRFAHFAANSAILEAMPNDADMLHIVDFDIGEG IQWPPLIEAMAWQHKTLRLTSIRWGEEDFAHSPWRFEDTRRQLCDHARSLGLKLKVEE MGIEDLANELKKMKKRGGGREWLAFNCMVGLPHMGKGKSRKFVNQFLNVAKELLASSV PRNRGIITFGDGDACAKLKDCSGFGTFFDGHLMHYQAILESMQSNFAEHLMQARMAME SLFVGPNICPQAWFQKWKEIEETRHFQAETALEGLRVSTERLMEAKGTVRERENLFEV SIGGNCGNELALEWRGTTLVRVSSWRQDQS" gene 451327..461990 /locus_tag="TCM_021619" /note="dbxref CacaoGD:Thecc1EG021619" mRNA join(451327..451538,459068..461990) /locus_tag="TCM_021619" /product="Concanavalin A-like lectin protein kinase family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s10410.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021621t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s10410.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.32 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1702t1" mobile_element 452796..456482 /note="source:INTACT803_F10_scaffold_6-int 3 4816" /mobile_element_type="retrotransposon:LTR/Copia" CDS 459081..461105 /locus_tag="TCM_021619" /note="paralog of Thecc1EG021621t1" /codon_start=1 /product="Concanavalin A-like lectin protein kinase family protein, putative" /protein_id="EOY07108.1" /db_xref="Phytozome:POPTR_0006s10410.1" /db_xref="TAIR:AT5G01550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5DMV1" /translation="MAGSCSWASLIFCIVFFPVFAQPQPPSFIFNDFNGSESKLTLEG ASIIRASGALKLTNKSNYAVGHAFYSESIQMLDNKSLPGSPKASSFSTTFVFAIVPPT SGRGGHGLAFTLSPSKQFPGAEAGHYMGIFNKENDGLSSNHVFAVEFDTVNGFNDDSD SDGNHVGININSMYSKETEPAAYFINNTNLKEDMKLESGDPVHAWIEYDGNFVNVTIS PLKVEKPSQPLISHRIDLTPLVEETMYVGFSASTGEKSSSHFILGWSFSTGGTARQLN VSQLPVPPPKEKDGSSFDPQVIGLIAALSTVTVLLLGILIYFTLYKRKAKSEELEDWE LDCPHRFQYKDLYAATRGFKDSEIIGVGGFGAVYKGVLPTTGAEIAVKKITQNSIQGL REFAAEIESLGRLRHKNLVNLQGWCKQKNDLLLIYEYIPYGSLHSLLFNQKQGFALSW DQRFNIIKGIAAGLLYLHEEWELVVIHRDVKSSNVLIDAGMNARLGDFGLARLYDHGT ESHTTNIVGTIGYIAPELARNGKASTRSDVFAYGVLLLEVVSGRKPIDSRNIFLVDWV IECHKAGQILDAMDPKLNSSFVTEEVRLVLLLGLLCSHPKPEVRPSMRKVMRYLNRDD PLPPIDYWESFDSRDELYSKFLEVISSDYKITKSHPSSSTSTSISYSSGT" gene 462177..465715 /locus_tag="TCM_021621" /note="dbxref CacaoGD:Thecc1EG021621" mRNA join(462177..462506,463288..464460,464544..465715) /locus_tag="TCM_021621" /product="Receptor lectin protein kinase-like, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s10410.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021619t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s10410.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.35 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc514t5; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1724t1" CDS join(463365..464460,464544..465382) /locus_tag="TCM_021621" /note="paralog of Thecc1EG021619t1" /codon_start=1 /product="Receptor lectin protein kinase-like, putative" /protein_id="EOY07109.1" /db_xref="Phytozome:POPTR_0006s10410.1" /db_xref="TAIR:AT5G01550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5DMV1" /translation="MASAASLALLFCFFPLLIALAQSVEFIFPGFNASEASLTREGAS IIKPTGVLRLTNKAHNVAGHAFYYQPIPMLDRYTSVSRNASSFSTSFVFEIVPSSPGQ GGYGLAFTLSPTPSFYRAGTAHYLGIFNSSNDGSETNHIFAVEFDTVNGHNEKDDRRG NHVGIDINSVDSTSLEMAAYFVNGIKEDLALEGEGPVHAWIEYGVQKIVNVTVCPLGK EKPTEPLISGLIDLRSVVKETMYVGFSAATGRKSSSHYILGWSFSTNGEAPTLSISQL PTTPVEKSSSNSFEPQIIALIAALSVVTMLLLVSLISLTLYRRMTRYENLEAWELDYP HRFSYRDLYTATKRFKESELIGVGGFGAVYREIESLGRLRHKHLVNLQGWCKQKNDLR LVYDYIPNWSLDTPLFNRKDNFVLSWARRFDIIKGIGAGLLYLHEEWEQVVIHRDVKS SNVLIDAEMNARLGDFGLARLYDHGTASHTTNVVGTIGYIAPELARNGKASTSIDVFA FGVLLLEIATGRRPTDSGNFFLVDWVMECRQMSRILDAADLKLNSNYVVEEMELILEL GLLCSHQRPGCRPTMRQVMQYLNEDGSLPFFDDWGSIDSQSIFETNARFLEVISKDSI LTSHSSSIGSISSTSISAGR" gene complement(465616..470000) /locus_tag="TCM_021622" /note="dbxref CacaoGD:Thecc1EG021622" mRNA complement(join(465616..466288,466387..468816, 469647..470000)) /locus_tag="TCM_021622" /product="Importin beta-1, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01030311001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015443t1" /inference="similar to AA sequence:Phytozome:GSVIVT01030311001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc499t4; alternateUTRof:Thecc1EG021622t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc499t1" mRNA complement(join(465616..466288,466387..468822, 469647..470000)) /locus_tag="TCM_021622" /product="Importin beta-1, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01030311001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015443t1" /inference="similar to AA sequence:Phytozome:GSVIVT01030311001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc499t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc499t1" CDS complement(join(466084..466288,466387..468806)) /locus_tag="TCM_021622" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG015443t1" /codon_start=1 /product="Importin beta-1, putative isoform 1" /protein_id="EOY07110.1" /db_xref="Phytozome:GSVIVT01030311001" /db_xref="TAIR:AT3G08947.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SKY7" /translation="MAMEITQFLLAAQSADAKVRTEAEGNLRQFQEQNLPVFLLSLSV ELANNEKPVESRRLAGIVLKNSLDAKDAIRKEQLVQQWMAIDISVKSQIKDLLLRTLG SSVPEARHTSAQVVAKIASIEIPRKQWPELIGSLLNNMTQQDRPAALKQATLETLGYV CEEISHQDLVQEEVNAVLTAVVQGMNLAEHSPEVRLAATRALYNALEFAQTNFENEME RNYIMKVVCDTAMSKEVEIRQAAFECLVAIASAYYEVLEPYMQTLFELTSNAVKGDEE TVALQAIEFWSSICDEEIELQEFETPESGDSGPPHSRFIEKALSSLVPLLLETLLKQE EDQDQDDTVWNISMAGGTCLGLVARTVGDAIVPLVMPFVESNILKPDWRCREAATYAF GSILEGPTIEKLSPLVQAGLDFLLTAMKDGNNHVKDTTAWTLSRIFELLHSPASGFSV IAPENLKRVVGVLLESIKDAPNVAEKVCGAIYYLVQGYEDAGPSASVLSPYLTDIISC LIATADRTDGSDSKLRSSAYETLNEVVRCSNIAETSPIIAQLLPVIMSKLGQTVEIQI VSSDDREKQGDLQASLCGVLQVIIQKLSSTDETKTIILQAADQIMILFLRVFGCRSST VHEEAMLAIGALAYATGPQFEKYMPEFYKYLEMGLQNFEEYQVCAITVGVVGDICRAL DDKVLPYCDGIMGLLLKDLASSELHRSVKPPIFSCFGDIGLAIGEHFEKYVPFALPMM QGAAEICAQLETADEEMMDYGNQLRRSIFEAYSGILQGFKSVKPDVMMPYAQHLLKFI ELVSRDRQRDESVTKAAVAVMGDLADALGSNTNTKLLFKDCAFYSEFLGECLQSDDEQ LKETAGWTQGMIGRVMVL" CDS complement(join(466084..466288,466387..468806)) /locus_tag="TCM_021622" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG015443t1" /codon_start=1 /product="Importin beta-1, putative isoform 1" /protein_id="EOY07111.1" /db_xref="Phytozome:GSVIVT01030311001" /db_xref="TAIR:AT3G08947.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SKY7" /translation="MAMEITQFLLAAQSADAKVRTEAEGNLRQFQEQNLPVFLLSLSV ELANNEKPVESRRLAGIVLKNSLDAKDAIRKEQLVQQWMAIDISVKSQIKDLLLRTLG SSVPEARHTSAQVVAKIASIEIPRKQWPELIGSLLNNMTQQDRPAALKQATLETLGYV CEEISHQDLVQEEVNAVLTAVVQGMNLAEHSPEVRLAATRALYNALEFAQTNFENEME RNYIMKVVCDTAMSKEVEIRQAAFECLVAIASAYYEVLEPYMQTLFELTSNAVKGDEE TVALQAIEFWSSICDEEIELQEFETPESGDSGPPHSRFIEKALSSLVPLLLETLLKQE EDQDQDDTVWNISMAGGTCLGLVARTVGDAIVPLVMPFVESNILKPDWRCREAATYAF GSILEGPTIEKLSPLVQAGLDFLLTAMKDGNNHVKDTTAWTLSRIFELLHSPASGFSV IAPENLKRVVGVLLESIKDAPNVAEKVCGAIYYLVQGYEDAGPSASVLSPYLTDIISC LIATADRTDGSDSKLRSSAYETLNEVVRCSNIAETSPIIAQLLPVIMSKLGQTVEIQI VSSDDREKQGDLQASLCGVLQVIIQKLSSTDETKTIILQAADQIMILFLRVFGCRSST VHEEAMLAIGALAYATGPQFEKYMPEFYKYLEMGLQNFEEYQVCAITVGVVGDICRAL DDKVLPYCDGIMGLLLKDLASSELHRSVKPPIFSCFGDIGLAIGEHFEKYVPFALPMM QGAAEICAQLETADEEMMDYGNQLRRSIFEAYSGILQGFKSVKPDVMMPYAQHLLKFI ELVSRDRQRDESVTKAAVAVMGDLADALGSNTNTKLLFKDCAFYSEFLGECLQSDDEQ LKETAGWTQGMIGRVMVL" gene complement(470844..472212) /locus_tag="TCM_021624" /note="dbxref CacaoGD:Thecc1EG021624" mRNA complement(470844..472212) /locus_tag="TCM_021624" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29820.m000981" /inference="similar to AA sequence:ricco:29820.m000981" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc5915t1" CDS complement(471187..472062) /locus_tag="TCM_021624" /note="dbxref ricco:29820.m000981" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07112.1" /db_xref="TAIR:AT3G51760.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IGG1" /translation="MIFLYMGEGMNEAMEKKRPRKLNFNAPLLSTRRPAGGHIGDKLS CTNSQGGCKDSSNGIPFCWEQAPGKPKNLDESNNVDDAETPRPKLPPSKWRPPEEACQ DHNHDHDEGCDADVDDYDDDNNDDVFSDAMEVLSLTQAIDIVEKAEKFRGSSDGLKSK SLEPSDLYGLNLESLDRSDCPSPSFIIERFLPDATALAASSAMNTSLKTKLPYLCNYS ESPCVSQAVINRPFSSPKGCGLEILLPWRMKHKLCGVKSPIKESSIIVKPTTSSKQKK LFSSIVAPSGEWRCK" gene complement(472210..478642) /locus_tag="TCM_021625" /note="dbxref CacaoGD:Thecc1EG021625" mRNA complement(join(472210..473261,474081..474390, 474478..474769,475672..477845,478093..478642)) /locus_tag="TCM_021625" /product="Tetratricopeptide repeat (TPR)-containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s13180.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042191t1" /inference="similar to AA sequence:TAIR:AT3G51770.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1685t4" mRNA complement(join(472437..473261,474081..474390, 474478..474769,475672..477665,477836..478164)) /locus_tag="TCM_021625" /product="Tetratricopeptide repeat (TPR)-containing protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s13180.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042191t1" /inference="similar to AA sequence:TAIR:AT3G51770.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1685t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1685t4" CDS complement(join(473032..473261,474081..474390, 474478..474769,475672..477707)) /locus_tag="TCM_021625" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042191t1" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-containing protein isoform 1" /protein_id="EOY07113.1" /db_xref="TAIR:AT3G51770.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O65020" /translation="MRTNMQHNIFTTMRSLKLIDGCKGTQVYALNTTGGGGGGGTTAG SGAGGVGEKLFHQLQDHLRANSIRSKSSRNYQASNTPAVVTETLLPYGLPVSDLLEPQ IESCLKFVDFIETIADVYRRIENCPQFEKSGMFIEECAIFRGLSDPKLFRRSLRSARQ HAVDVHSKIVLAAWLRYERREDELVGTSSMDCCGRNIECPKATLVAGYNPESIYDPCI CSRTPQGEFDDDLSMADEECSTSDDSGDMSFCIGDDEIRCIRSNIASLSTPFRTMLCG GFRESRRERINFTNNGISAEGMRAAEVYSRTKRLDCFDPQIVLELLSFSNRFCCDNLK SACDAYLASLVNEMEDALLLIEHGLAENAYLLVAACLQVFLRELPNSMHSPNVMKLFC NSDARERLAQVGHASFLLYYFLSQIAMEEDMKSNTTVMLLERLTECATESWQKQLAYH QLGVVMLERKEYKDAQNWFETAFKSGHIYSLVGAARAKFKRGHKYSAYKLINSLISDY KPVGWMYQERSLYCSGKEKMLDLEMATELDPTLSFPYKYRAVSLLEVNKIGAAISEIN KIIGFKVSPDCLELRAWISIAMEDYEGALRDVRALLTLEPNYMMFHGKMHGDHLVELL CPLVQQWSQADCWMQLYDRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNC QKAAMRSLRLARNHSTSEHERLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLK AYALADSSLDQESSLYVIQLLEDALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCY MNALNIKHTRAHQGLARVFHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMA KSDLIMATQLDPLRTYPYRYRAAVLMDDHKENEAIAELTKALAFKPDLQLLHLRAAFH DSMGAYISAVRDCEAALCLDPNHTETLELYNKVCDQVKEQK" CDS complement(join(473032..473261,474081..474390, 474478..474769,475672..477308)) /locus_tag="TCM_021625" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042191t1" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-containing protein isoform 2" /protein_id="EOY07114.1" /db_xref="TAIR:AT3G51770.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O65020" /translation="MFIEECAIFRGLSDPKLFRRSLRSARQHAVDVHSKIVLAAWLRY ERREDELVGTSSMDCCGRNIECPKATLVAGYNPESIYDPCICSRTPQGEFDDDLSMAD EECSTSDDSGDMSFCIGDDEIRCIRSNIASLSTPFRTMLCGGFRESRRERINFTNNGI SAEGMRAAEVYSRTKRLDCFDPQIVLELLSFSNRFCCDNLKSACDAYLASLVNEMEDA LLLIEHGLAENAYLLVAACLQVFLRELPNSMHSPNVMKLFCNSDARERLAQVGHASFL LYYFLSQIAMEEDMKSNTTVMLLERLTECATESWQKQLAYHQLGVVMLERKEYKDAQN WFETAFKSGHIYSLVGAARAKFKRGHKYSAYKLINSLISDYKPVGWMYQERSLYCSGK EKMLDLEMATELDPTLSFPYKYRAVSLLEVNKIGAAISEINKIIGFKVSPDCLELRAW ISIAMEDYEGALRDVRALLTLEPNYMMFHGKMHGDHLVELLCPLVQQWSQADCWMQLY DRWSSVDDIGSLAVVHHMLANDPGKSLLRFRQSLLLLRLNCQKAAMRSLRLARNHSTS EHERLVYEGWILYDTGHREEALAKAEESISIQRSFEAFFLKAYALADSSLDQESSLYV IQLLEDALRCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYMNALNIKHTRAHQGLAR VFHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLIMATQLDPLRTYP YRYRAAVLMDDHKENEAIAELTKALAFKPDLQLLHLRAAFHDSMGAYISAVRDCEAAL CLDPNHTETLELYNKVCDQVKEQK" gene complement(<477665..>478146) /locus_tag="TCM_021626" /note="dbxref CacaoGD:Thecc1EG021626" mRNA complement(join(<477665..477689,477846..>478146)) /locus_tag="TCM_021626" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is partial; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1640t1" CDS complement(join(<477666..477689,477846..>478145)) /locus_tag="TCM_021626" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07115.1" /translation="EKQRVAVSTATYTSNNFWLAANVIISSSLNSTLHFQSTIFFLCA FSQFSREKKKIPRGERKAKTCAEKVPSFIYFFYSTIEPCITIVFSASVYLSCGVVQHN IFTTMR" gene 478007..482617 /locus_tag="TCM_021627" /note="dbxref CacaoGD:Thecc1EG021627" mRNA join(478007..478532,480439..480476,481444..481508, 482327..482617) /locus_tag="TCM_021627" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.34 coverage" CDS join(480442..480476,481444..481508,482327..482457) /locus_tag="TCM_021627" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07116.1" /translation="MKHTGLIKSLLGYPSTSQLMICRFMETLNESVKAQELDEGFKAS GFRLQPSAFSLPLSTDPFDLSKIPNKPISIGK" mobile_element 481921..481990 /note="source:CACAO_M_E52694_F25_scaffold_8 4017 4085" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(481930..482006) /note="source:scaffold_6_CACTA_0712 1413 1489" /mobile_element_type="transposon:TIR/CACTA" mobile_element 481939..482025 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3219 3307" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(481942..482016) /note="source:INTACT146F_F14_scaffold_2-int 13446 13520" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(482026..482047) /note="source:CACAO_M_E14113_F106_scaffold_3 13758 13872" /mobile_element_type="retrotransposon:LTR/Copia" gene 489539..491725 /locus_tag="TCM_021628" /note="dbxref CacaoGD:Thecc1EG021628" mRNA join(489539..489815,489881..490151,490242..490318, 490459..490495,490611..490731,490841..491563) /locus_tag="TCM_021628" /product="Myb-like HTH transcriptional regulator family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s12940.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s12940.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc6152t1; alternateUTRof:Thecc1EG021628t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc6152t1" mRNA join(489542..490151,490242..490318,490459..490495, 490611..490731,490841..491725) /locus_tag="TCM_021628" /product="Myb-like HTH transcriptional regulator family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s12940.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s12940.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc6152t1" CDS join(489893..490151,490242..490318,490459..490495, 490611..490731,490841..491453) /locus_tag="TCM_021628" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Myb-like HTH transcriptional regulator family protein, putative isoform 1" /protein_id="EOY07117.1" /db_xref="Phytozome:POPTR_0016s12940.1" /db_xref="TAIR:AT2G38300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AMV6" /translation="MEGNNGTECSKTSPSKQNQAESESTEENDGESRPKNGGSSSNST VEENEKKPSVRPYVRSKMPRLRWTPDLHLRFIHAVERLGGQDRATPKLVLQLMNIKGL SIAHVKSHLQMYRSKKIDDPGQVITEHRHLVESGDRNIYNLSQLPMLQGYNNHHHGDS SSSFRYGDASWNGQECLQRNPYSSRSFIDEPRPGLHGTMTERIFGSKSTSNWSNYSLR MGSSSFNALPSWKSHELKNEFPSSHNLESFRTQPRSGAIELNPTSQTQAKVEEHISFG RSIGPSDANKTNAQECKAMKRKAPDCNLDLDLSLRLTQVNEESQRRSKEDDVGSELSL SLYSPSSSSKLSRLKGEDHSKESARRVSTLDLTI" CDS join(489893..490151,490242..490318,490459..490495, 490611..490731,490841..491453) /locus_tag="TCM_021628" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Myb-like HTH transcriptional regulator family protein, putative isoform 1" /protein_id="EOY07118.1" /db_xref="Phytozome:POPTR_0016s12940.1" /db_xref="TAIR:AT2G38300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AMV6" /translation="MEGNNGTECSKTSPSKQNQAESESTEENDGESRPKNGGSSSNST VEENEKKPSVRPYVRSKMPRLRWTPDLHLRFIHAVERLGGQDRATPKLVLQLMNIKGL SIAHVKSHLQMYRSKKIDDPGQVITEHRHLVESGDRNIYNLSQLPMLQGYNNHHHGDS SSSFRYGDASWNGQECLQRNPYSSRSFIDEPRPGLHGTMTERIFGSKSTSNWSNYSLR MGSSSFNALPSWKSHELKNEFPSSHNLESFRTQPRSGAIELNPTSQTQAKVEEHISFG RSIGPSDANKTNAQECKAMKRKAPDCNLDLDLSLRLTQVNEESQRRSKEDDVGSELSL SLYSPSSSSKLSRLKGEDHSKESARRVSTLDLTI" gene complement(491775..493221) /locus_tag="TCM_021629" /note="dbxref CacaoGD:Thecc1EG021629" mRNA complement(join(491775..492064,492217..492343, 492480..492570,492678..493016,493145..493221)) /locus_tag="TCM_021629" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.44 coverage" CDS complement(join(491991..492064,492217..492343, 492480..492570,492678..492988)) /locus_tag="TCM_021629" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07119.1" /translation="MPPKDQTSPNPEQMISPEGSNPPSSLDIVELTSSLQATEPRRAI SLHKRSASDSLVILRKPYLVGQSSSSLVTETQKWGRSFEPTMDPKKMKRWTYLHTHTM KLLLANRVSAQKSRLRRMEYIEKLNKDIETEQAKIAELAPQVSYYKHRRAMLQKENDE IKQKIEFLEKEEARKEAEYQALKDERDMLALTYFLQQEGL" mobile_element 495204..495282 /note="source:INTACT296_F13_scaffold_9-int 13163 13242" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(495474..496532) /locus_tag="TCM_021630" /note="dbxref CacaoGD:Thecc1EG021630" mRNA complement(join(495474..495725,495800..495858, 495947..496532)) /locus_tag="TCM_021630" /product="Uncharacterized protein" /note="quality class is medium, express is strong, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g318t1" CDS complement(join(495579..495725,495800..495858, 495947..496046)) /locus_tag="TCM_021630" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07120.1" /translation="MAASPPPLLSMAPDDPQQDDHLLFSRDRHFALHEILTCKNVIRP SKFRHINSPCVRPLDLYGTLGLSLGSWSRRPGPAFCHIRVKIESAMRWQLQNGGDRE" mobile_element 500496..505497 /note="source:INTACT192_F168_scaffold_5-int 1 5002" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 508392..509654 /note="source:CACAO_on_S_E46_scaffold_2 7394 9638" /mobile_element_type="transposon:TIR/Mutator" mobile_element 509655..510816 /note="source:CACAO_M_E12289_F140_scaffold_3 1210 2371" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 511288..511337 /note="source:scaffold_4_CACTA_0490 8834 8882" /mobile_element_type="transposon:TIR/CACTA" gene 512091..513842 /locus_tag="TCM_021635" /note="dbxref CacaoGD:Thecc1EG021635" mRNA join(512091..512460,512630..512772,512854..512973, 513190..513234,513365..513842) /locus_tag="TCM_021635" /product="Nudix hydrolase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s12910.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029756t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s12910.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g02614t00001" CDS join(512130..512460,512630..512772,512854..512973, 513190..513234,513365..513583) /locus_tag="TCM_021635" /note="paralog of Thecc1EG029756t1" /codon_start=1 /product="Nudix hydrolase" /protein_id="EOY07121.1" /db_xref="Phytozome:POPTR_0016s12910.1" /db_xref="TAIR:AT1G28960.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IGE3" /translation="MARIPPSMSIETEMECGRKEVVGSQTLQRIAEQLQCYKTPSLIE ELENVTGRNMGSKFGIMDHVEGENGLFTHANWRKRRAAVLICLFEGKQGELRVILTKR SMKLSSHPGDVALPGGKMEEGDDDDSATALREAMEEIGLDSYLVQVVAKLEPFISQNQ LRVVPVVGLLAKIEDFSPVLNCDEVDAVFDVPLEMFLKGGNSGKQGGLGDLETVDNHR CEERAWKSWKYVFHCFDCETEQGAFTICGLTASILIRAASVVYQQIPCFSSNLPDFQQ LQRALSNAA" gene 514534..518118 /locus_tag="TCM_021636" /note="dbxref CacaoGD:Thecc1EG021636" mRNA join(514534..515242,515339..515624,515724..515827, 516855..518118) /locus_tag="TCM_021636" /product="Ammonium transporter 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s10370.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003161t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s10370.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05352t00001" CDS join(514598..515242,515339..515624,515724..515827, 516855..517289) /locus_tag="TCM_021636" /note="paralog of Thecc1EG003161t1" /codon_start=1 /product="Ammonium transporter 2" /protein_id="EOY07122.1" /db_xref="Phytozome:POPTR_0006s10370.1" /db_xref="TAIR:AT2G38290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M6N7" /translation="MAVEQLAYTAHEIAPAVPPWLNKGDNAWQMIASTLVGIQSMPGL VILYASIVKKKWAVNSAFMALYAFAAVLICWVLLCYRMAFGDELLPFWGKGAPALGQK YLVDRAKIPESKHRITNGNYEITEPFYPMATLVYFQFTFAAITLILLAGSVLGRMNIK AWMAFVPLWLIFSYTVVAFSLWGGGFLYRWGVIDYSGGYVIHLASGIAGLTAAYWVGP RIKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAANIDSSIAVLNTNVAAATSL LVWTSLDVVFFGKPSVIGAVQGMMTGLACITPGAGLVQSWAAIVMGMLSGSIPWVSMM ILHKRCSLLQKIDDTLGVFHTHAVAGLLGGLLTGLLAEPDLCKLILPTDTRGAFYGEN GGVQFLKQIVAALFVIGWNVASTTIILLVIRLFIPLRMPDNQLEIGDDAVHGEEAYAL WGDGEKYDPTRHGWHTSSHSEVTAPSPYVNGARGVTINL" gene complement(518571..521401) /locus_tag="TCM_021637" /note="dbxref CacaoGD:Thecc1EG021637" mRNA complement(join(518571..518972,520039..520185, 520285..520800)) /locus_tag="TCM_021637" /product="BCL-2-associated athanogene 4, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s12880.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042183t1" /inference="similar to AA sequence:frave:gene13483" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc738t1; inference alignment:Newbler:10:TSA:cgbaP1_g05631t00001; inference alignment:Newbler:10:TSA:cgbaP2_g02106t00001" mRNA complement(join(518577..518972,520039..520185, 520285..520604,520813..521040)) /locus_tag="TCM_021637" /product="BCL-2-associated athanogene 4, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s12880.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042183t1" /inference="similar to AA sequence:frave:gene13483" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02438t00002; inference alignment:Newbler:10:TSA:cgbaP1_g05631t00001; inference alignment:Newbler:10:TSA:cgbaP2_g02106t00001" mRNA complement(join(518598..518972,520039..520185, 520285..520604,521072..521401)) /locus_tag="TCM_021637" /product="BCL-2-associated athanogene 4, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s12880.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042183t1" /inference="similar to AA sequence:frave:gene13483" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g02106t00001; inference alignment:Newbler:10:TSA:cgbaP2_g02106t00001" CDS complement(join(518775..518972,520039..520185, 520285..520604,521072..521285)) /locus_tag="TCM_021637" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene13483; paralog of Thecc1EG042183t1" /codon_start=1 /product="BCL-2-associated athanogene 4, putative isoform 1" /protein_id="EOY07123.1" /db_xref="TAIR:AT3G51780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HNC8" /translation="MKSPNAQSEETDWELRPGGMLVQRRDGQEDHHHKHDHETAAADS SFGPMIKINVSYGPAQHELYVPAHSTFGELKKEIAQKTGLEPDRQKVLFRGKEKEDKE HLNVAGVKDKSKVLLLENPARKEKKVEEMSSSKEKAEESTSSEENEVEEMRESEEMSK AFAAVAGVRKEVDKLSERVAALEVAVNSGTKVANEEFDVSAELLMRELLKLDGIEAEG EAKLQRKAEVRRVQNFHETLDNLKARNSNPFSNSSNAVSVTTNWETFDSGMGSLTAPP PMSSSTKMTQDWEQFE" CDS complement(join(518775..518972,520039..520185, 520285..520604,520813..520861)) /locus_tag="TCM_021637" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene13483; paralog of Thecc1EG042183t1" /codon_start=1 /product="BCL-2-associated athanogene 4, putative isoform 2" /protein_id="EOY07124.1" /db_xref="TAIR:AT3G51780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HNC8" /translation="MPFHMGLGASTPKTASGELKKEIAQKTGLEPDRQKVLFRGKEKE DKEHLNVAGVKDKSKVLLLENPARKEKKVEEMSSSKEKAEESTSSEENEVEEMRESEE MSKAFAAVAGVRKEVDKLSERVAALEVAVNSGTKVANEEFDVSAELLMRELLKLDGIE AEGEAKLQRKAEVRRVQNFHETLDNLKARNSNPFSNSSNAVSVTTNWETFDSGMGSLT APPPMSSSTKMTQDWEQFE" CDS complement(join(518775..518972,520039..520185, 520285..520635)) /locus_tag="TCM_021637" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene13483; paralog of Thecc1EG042183t1" /codon_start=1 /product="BCL-2-associated athanogene 4, putative isoform 3" /protein_id="EOY07125.1" /db_xref="TAIR:AT3G51780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HNC8" /translation="MSSCFYRVMAGELKKEIAQKTGLEPDRQKVLFRGKEKEDKEHLN VAGVKDKSKVLLLENPARKEKKVEEMSSSKEKAEESTSSEENEVEEMRESEEMSKAFA AVAGVRKEVDKLSERVAALEVAVNSGTKVANEEFDVSAELLMRELLKLDGIEAEGEAK LQRKAEVRRVQNFHETLDNLKARNSNPFSNSSNAVSVTTNWETFDSGMGSLTAPPPMS SSTKMTQDWEQFE" gene complement(521828..525022) /locus_tag="TCM_021638" /note="dbxref CacaoGD:Thecc1EG021638" mRNA complement(join(521828..522329,522689..522788, 524156..525022)) /locus_tag="TCM_021638" /product="Transmembrane protein G1P-related 1" /inference="alignment:exonerate-protein:2:frave:gene20600" /inference="similar to AA sequence:frave:gene20600" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1461t1_C2" CDS complement(join(522268..522329,522689..522788, 524156..524911)) /locus_tag="TCM_021638" /note="dbxref frave:gene20600" /codon_start=1 /product="Transmembrane protein G1P-related 1" /protein_id="EOY07126.1" /db_xref="TAIR:AT3G51790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q96326" /translation="MAARLALHFRSHLLRNLHNQKPPTLATLKSQPLISQLAPVPITT VDHFFTSPTLRFLSTSRRIPTRPKKVDIGARARQLQTRRLWTYALTFSCIAGFVVLVL NNFQEQLVFYVTPTDALEKYTQNPSKTKFRLGGLVLEGSVVQPGSSKEMEFVITDLIT DILVRYEGSLPDLFREGHSVVVEGFVKPFTEETKREVSSKSVSGKARSGDCYFSATEV LAKHDEKYMPAEVAAAIEKNKKKIEEGLEGTKESDLLHLPSARFLCLSGLAYMRRKPL FLFYLVRLPVLKSSPVVYGNILELRSSSW" gene complement(525941..526804) /locus_tag="TCM_021639" /note="dbxref CacaoGD:Thecc1EG021639" mRNA complement(join(525941..526239,526330..526804)) /locus_tag="TCM_021639" /product="PEBP (phosphatidylethanolamine-binding protein) family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01030332001" /inference="similar to AA sequence:ricco:29601.m000434" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g330t1" CDS complement(join(526165..526239,526330..526761)) /locus_tag="TCM_021639" /note="dbxref ricco:29601.m000434" /codon_start=1 /product="PEBP (phosphatidylethanolamine-binding protein) family protein" /protein_id="EOY07127.1" /db_xref="TAIR:AT5G01300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7M739" /translation="MATDQDQFRLVSPAINHEGRLPRKYTDEGQGTKKNLSPPLEWYN VPEGTRTLALVVEDIDAPDPSEPIVRWTCWVVVNIPPTLKGLPEGFSGKEEEAGGDYA EIKEGSNDHKVPGWHGPKLPSHGHRFQFRLFALDDELKLGNKVTKEKLLDSIEGHMLG EAEFTTKF" gene complement(527020..527425) /locus_tag="TCM_021640" /note="dbxref CacaoGD:Thecc1EG021640" mRNA complement(527020..527425) /locus_tag="TCM_021640" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS complement(527073..527315) /locus_tag="TCM_021640" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07128.1" /translation="MCRPHPPALDLAINQQLENKTLVLELDPASLFMIMSISPTISPC SIALKTFDSLCSAYHYHPSLVLLCIAYIEPGPIQEE" gene 529669..530489 /locus_tag="TCM_021641" /note="dbxref CacaoGD:Thecc1EG021641" mRNA 529669..530489 /locus_tag="TCM_021641" /product="Transcription factor bHLH140" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01030333001" /inference="similar to AA sequence:Phytozome:POPTR_0006s10350.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g328t1" CDS 529739..530254 /locus_tag="TCM_021641" /codon_start=1 /product="Transcription factor bHLH140" /protein_id="EOY07129.1" /db_xref="Phytozome:POPTR_0006s10350.1" /db_xref="TAIR:AT5G01310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HCY8" /translation="MDYFPSPNLCSSSSFAGSPSVANNRNNNNNSKEKKKAGKKTKGA VKLSTDPQSVAARERRHRISDRFKILQSMVPGGTKMDTVSMLDEAIHYVKFLKTQIWL HQAMINFVDDDPSSFFAGSFPVQGDFYSPNNTNPNPAAALQPSQLLPLPDSCFQDDQW TMPYDVYMKNQ" gene complement(531798..533439) /locus_tag="TCM_021642" /note="dbxref CacaoGD:Thecc1EG021642" mRNA complement(531798..533439) /locus_tag="TCM_021642" /product="Serine-threonine protein kinase, plant-type, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021643t1" /inference="similar to AA sequence:ricco:29601.m000437" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.87 coverage" CDS complement(532479..533411) /locus_tag="TCM_021642" /note="dbxref ricco:29601.m000437; paralog of Thecc1EG021643t1" /codon_start=1 /product="Serine-threonine protein kinase, plant-type, putative" /protein_id="EOY07130.1" /db_xref="TAIR:AT2G15042.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SWX6" /translation="MKVDDNETQLSVKHLQFEFLQLSGLYYADGITVTNKGLTMELVK ILTLFTSIDLSFNNFEGPIPDVIGEFKALYVLNLSHNALTGAIPPSLGKLQQLESLDL SSNNLNGSIPPQLVNLNFLAVLNLSHNQLEGPIPAGKQFSTFENESYEGNKGLCGYPL TKSCKNANNGHNSQSDAAEKNQNDEFDWEFIFIGAGFGVGAAAAVAPFIFWKRANKWV DNTVDKILGIILPKVGLVYTPPDDAEVKADNTENDDEDEEIKDKYGEFRGRYCVFCSK LDKTRTKAIHDTCCTCYDSPSLSPSSSTSSSFSP" mobile_element 536630..537424 /note="source:CACAO_Helitron_E81_scaffold_3 2554 3372" /mobile_element_type="transposon:Helitron" gene 537454..539599 /locus_tag="TCM_021644" /note="dbxref CacaoGD:Thecc1EG021644" mRNA join(537454..537765,538389..539599) /locus_tag="TCM_021644" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.22 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2081t1" CDS join(537709..537765,538389..538703) /locus_tag="TCM_021644" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07131.1" /translation="MDLKKEKRVFKMSSLGTVAAEICRVKRLNCLKVGNPFSMDFHQI AETGQWGDFSAQVGPSSTPHFPRLCWTWGPPRINFRQVSLPVRFWMLRPQRASLTWSY PPPKETRFCHLNLCRMEMLST" gene complement(538096..547250) /locus_tag="TCM_021645" /note="dbxref CacaoGD:Thecc1EG021645" mRNA complement(join(538096..539033,540075..540169, 540670..540752,542005..542047,542371..542547, 544048..544222,544707..544764,545053..545105, 546734..546901,547053..547250)) /locus_tag="TCM_021645" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.17 coverage" CDS complement(join(538878..539033,540075..540169, 540670..540752,542005..542047,542371..542547, 544048..544222,544707..544764,545053..545105, 546734..546901,547053..547133)) /locus_tag="TCM_021645" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07132.1" /translation="MLCSMEKGAVTNDKLVVPYSLIRKKANGETPAKLDSFFASDGDE DSESEASEAPEFASIGDIIILMDSTSPVFMALIAKTMAKLENVLTRPLFGVYFPKDRV LTTALKMFIEPLLCMKLKIDSGNDNNGNEKNNKRLKAGVDTPCYRNHNLLLLRHIQPS LPCASKESAPHLSVSSFRRCFRAWNTLGAFALGTPLGTSMLGKPLGSSRLRTPLSVFM FRVFLRLKNLGRSALGTPLTLLVSMCTNASFLILYGHIKRDYPTKGDESNENKGECAF VAEGPFPKSISAIDLTTTQVHWPFGGIKCWTMLDASPLIIQSLADCSNWCHNHDTILD FLHAKASNLIFICCFPSAIRGLHSSTSL" mobile_element complement(539442..541967) /note="source:INTACT575_F74_scaffold_1-int 1 2591" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 542285..542573 /note="source:CACAO_M_E52630_F119_scaffold_7 1 269" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(542836..543643) /note="source:INTACT44_F119_scaffold_6-int 1 862" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 545452..545733 /note="source:CACAO_on_E69_scaffold_9 87 315" /mobile_element_type="transposon:TIR/hAT" mobile_element 545708..545777 /note="source:CACAO_on_E69_scaffold_9 957 1025" /mobile_element_type="transposon:TIR/hAT" mobile_element 546248..546473 /note="source:CACAO_M_E49809_F2_scaffold_7 3312 3522" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(547218..547338) /note="source:CACAO_M_S_E5795_F2_scaffold_2 5867 6002" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(549900..553409) /locus_tag="TCM_021646" /note="dbxref CacaoGD:Thecc1EG021646" mRNA complement(549900..553409) /locus_tag="TCM_021646" /product="LRR receptor-like serine/threonine-protein kinase GSO1, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400038156" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021647t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s12810.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1278t9" CDS complement(550084..553266) /locus_tag="TCM_021646" /note="paralog of Thecc1EG021647t1" /codon_start=1 /product="LRR receptor-like serine/threonine-protein kinase GSO1, putative" /protein_id="EOY07133.1" /db_xref="Phytozome:POPTR_0016s12810.1" /db_xref="TAIR:AT1G47890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IGD5" /translation="MRISLVSWLFFISFIAIFFTINAVSVSGQCQSDQQELLLGLKIA LNSTLSVKLMKWNQSTDCCSWDGVSCDAGGRVIELDLSNQSISGAIESSCSLFRLQHL QRLNLAYNEFISAFPSEFDKLANLTYLNLSAAGFTGQIPIEISYMTKLVTLDLSTFWF LDLPAKLEKPNLVMLVQNLTRLKILYLDGVNISANGKEWSQALASSLPNLQVLSMSYC YLSGPIDPSLAKLKSLSVIRLDGNNLSAPFPKFFAEFQTLTSLHLSETGLSGRLPEEI LQVPTLQTLDLSFNYLLEGSFPKFPPNASLQTLVLSYTNFGGELLESIGNLGQLRRIE LTKCKFNGPIPETIEKLRQLIYLDFSQNNFSGPIPSFTSLRNLSDLHLADNQLTSSIL STNWSSLLNLVTLDLRHNSFSGAVSPTLLRSPSLKRVDLSKNQFTGGFSEVSGEFSLE LKVLDLSHNKLQGPFPMSVFEIQGLTFLSLSWNNFSGLIPLTAFQKLRELSFLDLSYN NFFVDSSASVPYFTNITRLKLASCNLTKFPDFVKNQSKLTHLDLSNNQIYGEIPNWIW KPKLQYLNLSLNFLVQFKGPLHIPSYLSVIDFRGNQLQGHIPIFPPQAIYLDYSNNNF SSVLPPEIGNYLQFATFFFISGNNFHGSIPTSICNNSYLQVLDLSNNSLSGPIPECLI QMSVSLGVLNLRRNNLSGIITDTFSKICTLQTLDLNRNLIGGKVPKSLANCRMLEVLD IGNNQINDTFPCHLKDTSRLRALVLRSNKFNGDIYCQGNNITWPMLQIIDLASNYFSG KLPQAYLRTWNAMKANEDGPHLKHLQFEVFQFDELSFQDVLTVTIKGQEMELVKILTI FTSIDFSCNKFEGPIPQVIGEFKALHVLNLSSNLLTGTIPSFLGDLLTLESLDLSSNH LTGQLPSQLANLNFLSFLNVSNNKLVGRIPKGTQLQSFSDASFENNGGLCGPPLEAKC QSSPTFKDSPSHSGTGRHIDWNLISVETGFFFGLGIVIAPLIFWKRWRIWYYKHIDRA LFRLFPRLVLKNRNHGRRAHRSRGRRLQQQ" mobile_element complement(554226..554334) /note="source:CACAO_Mutator_E1376_scaffold_6 1864 1962" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(555037..555126) /note="source:CACAO_M_S_E16543_F3_scaffold_2 4776 4864" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 555064..555146 /note="source:CACAO_M_S_E7994_F98_scaffold_2 2041 2121" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 555406..555469 /note="source:scaffold_5_CACTA_0603 5854 5921" /mobile_element_type="transposon:TIR/CACTA" mobile_element 555740..556525 /note="source:CACAO_M_S_E5234_F276_scaffold_1 6842 7701" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(559870..560063) /note="source:CACAO_M_S_E14849_F156_scaffold_2 665 801" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 559982..560287 /note="source:CACAO_PIF_E220_scaffold_7 1264 1569" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 560316..561223 /note="source:scaffold_9_CACTA_0924 6691 7950" /mobile_element_type="transposon:TIR/CACTA" mobile_element 561244..561603 /note="source:scaffold_9_CACTA_0924 7881 8297" /mobile_element_type="transposon:TIR/CACTA" gene complement(562107..566229) /locus_tag="TCM_021647" /note="dbxref CacaoGD:Thecc1EG021647" mRNA complement(562107..566229) /locus_tag="TCM_021647" /product="LRR receptor-like serine/threonine-protein kinase GSO1, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400038156" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021643t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s12810.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.16 coverage" CDS complement(562910..566104) /locus_tag="TCM_021647" /note="paralog of Thecc1EG021643t1" /codon_start=1 /product="LRR receptor-like serine/threonine-protein kinase GSO1, putative" /protein_id="EOY07134.1" /db_xref="Phytozome:POPTR_0016s12810.1" /db_xref="TAIR:AT1G47890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IGD5" /translation="MRISLVSWLFFISFVAIFFSINAVSVSGQCQSDQQELLLGLKNG LNSTLSVKLVKWNQSTDCCSWDGVSCDAGGRVIALNLSNESISGVIDNSSSLFSLHNL QSLNLAYNSFNSTIPSTFDELANLSYLNLSNAGFKGQIPVAISRMTRLVTLDLSTLNF PGDVQLKLENPNLRMLVQNLSKLEELHLDGVNISAQGKEWCQPISASLSKLQVLSMSN CYLSGPIEPHLQNLKNLSVIHLDKNNLSATVPTFLAKLSNLTSLRLSSCGLHGIFPKE ILQVRTLQSLDIHENEKLQGSLQEFPYNGSLRILLLSGTNFSGSLPQSIGNLVNLTRL DLSNCNFSGAILYSFPNLQQLVYLDLSFNSFTGQIPPFNMSKNLASIDLSHNKLTGEI QSYDWEGLQNLTYIDLSHNALHGNIPSYLFALPLLKTVMLSNNQFDGTVLNFPNVRQS LLDILDLSGNQLQGPIPMSVFELRGLHVLSLSSNKFNGTIWLGDIQKLVNLTHLDLSH NKLSVDATGSYSTFSSFPKFSRLELASCRLKVFPDLKNQSRLTYLDLSDNQISGEVPN WIWNVADGFLQHLNLSFNRLVGLQKPYQMPLLNVLDLHSNNLSGNIPTLPTSASYLDY SRNNFTSTLPPNIGSNLSYTIFFSLSSNGLTGFIPDSICDAVYLQVLDLSNNNLSGRI PNCLIAREVSLGVLNLGGNSLDGNIPDAFPSHCSIQTLNVNSNELQGKIPRSLVRCKE LEVLDLGNNHINDSYPCRLNNISSLRVLVLRSNEFHGEIGCPVNTGTGSKLQIIDIAH NSFNGRLPEKLLTTWEAMMVDEDEAQLNVKRLQFEFLQGSGLYYLDGVTVTIKGLTVD LVKILTLFTSIDFSCNKFEGPIPDVIGEFKALYFLNLSQNALTGAIPPSLGKLHQLES LDLSSNHLIGQIPPQLANLNFLSFLNVSNNKLVGGIPTGTQLQSFPNASFEKNAGLCG PPLEVQCQSPAAIEDSPSNSWTGSHIDWNFISIETGFFFGLGIVIAPLIFWKRWRIWY YKHIDRALFRLLPRLVLKNKNHGRRAHRSQRRRL" gene 566492..575000 /locus_tag="TCM_021648" /note="dbxref CacaoGD:Thecc1EG021648" mRNA join(566492..566760,567299..567433,567530..567634, 569492..569628,569846..570771,571285..572172, 572701..573208,573297..573467,574144..575000) /locus_tag="TCM_021648" /product="APRATAXIN-like" /inference="alignment:exonerate-protein:2:frave:gene13477" /inference="similar to AA sequence:ricco:29601.m000441" /note="quality class is strong, express is medium, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc18t14" CDS join(566688..566760,567299..567433,567530..567634, 569492..569628,569846..570771,571285..572172, 572701..573208,573297..573467,574144..574479) /locus_tag="TCM_021648" /note="dbxref ricco:29601.m000441" /codon_start=1 /product="APRATAXIN-like" /protein_id="EOY07135.1" /db_xref="TAIR:AT5G01310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BIM1" /translation="MLAAIASFFSFLSLLINAKKLLVLDQALGFIYKCVKGQTLPCRL CLSRCFLSNQGIGDCFSSFHHHESQVEEEAHEKIEEKAQKDEAEIQVDRSNLSRPTGF SVKKEGEEEKEKGKPIVAMLVGAPGSGKSTFCDNVMRASSRPWVRICQDTINNGKAGT KLQCLNSAAASLKGGKSVFIDRCNLDKEQRLDFVKLGGPQVEVHAVVLDLPAKLCISR IVKRTGHEGNLQGGKAAAVVNRMLQNKELPNLSEGFSRITFCQNEADVQAAVNTYTAL GSLDILPHGCFGQKNPNAKTQLSILKFLKRPHETNSQDSEPSQLSKGKGPCSKSQETV SSLSGAASQKIKVSEDPVAGFISQHDDDFPTLAFPSISTADFQFNLEKASNIIVEKVE EFIDKLGNARLVLVDLTHGSKILSSVRAKAGEKNIDSKRFFTFVGDITQLYSKGGLRC NVIANAANWRLKPGGGGVNAAIFNAGGPALEAATTDRAKSLLPGNALVVPLPSISPLY SKEGVTHVIHVLGPNMNPHRPNCLDNDYTKGCKVLRDAYSSLFEGFLSIAKTQVKFPS RSSQSIQLELSISEDKTENILRNHFSHSDQEIKEYGNYESDRSKKCKESENEVVVVMG KEQEMVLSLSGAASEKIKVIEEPAASSISQRGFDVPTLAFPSISTADFKFNLEKASNI IVEKIEEFMDRLGNARLVLVDLTHRSEILSLVRAKAAQKNIDSKRFFTFVGDITRLNS EGGLHCNVIANAANWRLKPGGGGVNAAIFNAGGSGLEAATKNQAMSLLPGTAVVVPLP SISPLSIREGMTHVIHVLGPNMNPERPNCLDDDYIKGCKILQDAYSSLFEGFLSIAKT QVKFPKRSSKSILSEPSVPEDKIIGTMTKTWAPWVQSLYNIAMQPEKYKDEVLEASDD VVVLNDKYPKAKQHLLVLARFEGLDCLADARKEHLQLLTTMHAMGLKWAEKFLHEDAA LVFRLGYHSVPSMRQLHLHVISQDFDSKHLKNKKHWNSFNAAFFRDSLDVIEEVSNHG KATLQDDNRLMSMELRCHRCRSAHPNMPRLKSHISNCQAPFPAALQENGRLVLAQSNS GCDP" gene complement(575218..586182) /locus_tag="TCM_021649" /note="dbxref CacaoGD:Thecc1EG021649" mRNA complement(join(575218..575820,575901..576089, 576216..576333,576468..577118,577216..577379, 577494..578019,583616..584198,585934..586182)) /locus_tag="TCM_021649" /product="Thiamine pyrophosphate dependent pyruvate decarboxylase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s12760.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021650t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s12760.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04813t00001" CDS complement(join(575650..575820,575901..576089, 576216..576333,576468..577118,577216..577379, 577494..578018)) /locus_tag="TCM_021649" /note="paralog of Thecc1EG021650t1" /codon_start=1 /product="Thiamine pyrophosphate dependent pyruvate decarboxylase family protein" /protein_id="EOY07136.1" /db_xref="Phytozome:POPTR_0016s12760.1" /db_xref="TAIR:AT4G33070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10MW3" /translation="MDTKIGSLDVCKPSSTDVGSPPNGTVATIQGSVSPTVINSCEAT LGRHLARRLVQVGVTDVFSVPGDFNLTLLDHLIAEPELNLIGCCNELNAGYAADGYAR SRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRVLHHTIGLPD FSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISISCNLAAIPHPTF SSEPVPFSLSPKLSNKMGLEAAVEATAEFLNKAVKPVLVGGPKLRVAKACEAFVELAD ASGYALAVMPSAKGLIPEQHPHFIGTYWGAVSTAFCAEIVESADAYLFAGPIFNDYSS VGYSLLLKKEKAIIVQPDRVVIANGPAFGCVLMKDFLRALAKRVKHNNTAYENYHRIF VPEGHPLKASPREPLRVNVLFQHIQNLLSSDTAVIAETGDSWFNCQKLKLPRGCGYEF QMQYGSIGWSVGATLGYAQAVPEKRVIACIGDGSFQVTAQDVSTMLRCGQNTIIFLIN NGGYTIEVEIHDGPYNVIKNWNYTALVDAIHNGEGNCWTTKVFCEEELIEAIEMATGA KKDCLCFIEVIVHKDDTSKELLEWGSRVSAANSRPPNPQ" mobile_element 579105..579171 /note="source:scaffold_5_CACTA_0580 11361 11484" /mobile_element_type="transposon:TIR/CACTA" mobile_element 579172..579228 /note="source:CACAO_M_E49205_F4_scaffold_6 9401 9457" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 581603..581752 /note="source:CACAO_hAT_E410_scaffold_1 59 214" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(581751..581795) /note="source:CACAO_M_E23512_F28_scaffold_4 9094 9138" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 582064..582677 /note="source:CACAO_hAT_E1967_scaffold_5 116 746" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(582067..582618) /note="source:CACAO_Again_on_S_E275_scaffold_9 296 901" /mobile_element_type="transposon:TIR/hAT" mobile_element 582175..582802 /note="source:scaffold_3_CACTA_0398 3640 4254" /mobile_element_type="transposon:TIR/CACTA" mobile_element 582793..583090 /note="source:scaffold_3_CACTA_0398 3956 4249" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(583089..583179) /note="source:INTACT433_F212_scaffold_1-int 3049 3135" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 583164..583222 /note="source:CACAO_hAT_E410_scaffold_1 2705 2762" /mobile_element_type="transposon:TIR/hAT" mobile_element 583180..583193 /note="source:scaffold_2_CACTA_0280 663 703" /mobile_element_type="transposon:TIR/CACTA" gene complement(586234..590398) /locus_tag="TCM_021650" /note="dbxref CacaoGD:Thecc1EG021650" mRNA complement(join(586234..586619,586700..586888, 586990..587134,588730..589380,589476..589639, 589746..590398)) /locus_tag="TCM_021650" /product="Thiamine pyrophosphate dependent pyruvate decarboxylase family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g29190.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021649t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s12760.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.46 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g765t1" CDS complement(join(586449..586619,586700..586888, 586990..587134,588730..589380,589476..589639, 589746..590270)) /locus_tag="TCM_021650" /note="paralog of Thecc1EG021649t1" /codon_start=1 /product="Thiamine pyrophosphate dependent pyruvate decarboxylase family protein" /protein_id="EOY07137.1" /db_xref="Phytozome:POPTR_0016s12760.1" /db_xref="TAIR:AT4G33070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10MW3" /translation="MDTKIGSVDVCKPSSNDVGSPPNGIVATIQGSVSPTVINSSEAT LGRHLARRLVQVGVTDVFSVPGDFNLTLLDHLIAEPELNLIGCCNELNAGYAADGYAR SRGVGACVVTCTVGGLSVLNAIAGAYSESLPLICIVGGPNSNDFGTHWILHHTIGLPD FSQELRCFQTVTCYQAVVNNLEDAHELIDTAISTSLKESKPVYISISCNLAAIPHPTF SLEPVPFSLSPKMSNKMGLEAAVEATAEFLNKAVKPVLVGGPKLRVAKACEAFVKLAD TSGYALAVMPSAKGLVPEHHPHFIGTYWGAVSTAFCAEIVESADAYLFAGPIFSDDSS VGYSLLLKKEKAIIVQPDRVVIANGPAIGSVSMKDFLGALAKRLKHNNTAYENYHRIF FTEGHPLEASPRELLRVNILFQHIQNLLSSETAVIVETGDSWFSCQRLKLPRGCGYEF QMQYGSIGWSVGATLGYAQAVPEKRIIACIGDGSFQIPAVIFCPVVTAQDVSTMLRCG QNTIIFLINNGGYTVEVQIHDGPYNVIKNWDYAALVDAIHNGEGNCWTTKVFCEEELI EAIDMAIGAKKDCLCFIEVIVHKDDTSKDVLEFGTRVSIVNSRPPNSQ" mobile_element complement(587241..587445) /note="source:CACAO_on_E52_scaffold_7 3884 4093" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(587455..587565) /note="source:CACAO_PIF_E465_scaffold_115 6266 6375" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(591504..592281) /note="source:CACAO_Again_on_S_E228_scaffold_7 2428 3019" /mobile_element_type="transposon:TIR/hAT" gene complement(592556..593968) /locus_tag="TCM_021651" /note="dbxref CacaoGD:Thecc1EG021651" mRNA complement(join(592556..593156,593401..593471, 593561..593623,593693..593814,593934..593968)) /locus_tag="TCM_021651" /product="DNAJ heat shock N-terminal domain-containing-like protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021655t1" /inference="similar to AA sequence:Phytozome:GSVIVT01003939001" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(592886..593156,593401..593471, 593561..593623,593693..593782)) /locus_tag="TCM_021651" /note="paralog of Thecc1EG021655t1" /codon_start=1 /product="DNAJ heat shock N-terminal domain-containing-like protein" /protein_id="EOY07138.1" /db_xref="Phytozome:GSVIVT01003939001" /db_xref="TAIR:AT3G08970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SR96" /translation="MKDQGQFGGSSRSHSQCRSSAKSIRAINSEGKQYYESIIEEVAS LLQGAIKVGFGSIKLWDRENTKVVCLFIQREFHRNHYQGDNQSVASGSRNSMSYILLD ATKQPSFLSVFDKSGFKSPDHFLVAYKPRKGNFAAYMGDMTMEEIEIFIGSVLNGDIQ FTRT" mobile_element complement(596326..596452) /note="source:CACAO_Helitron_E87_scaffold_3 1 137" /mobile_element_type="transposon:Helitron" mobile_element 597428..597651 /note="source:scaffold_7_CACTA_0789 1861 2094" /mobile_element_type="transposon:TIR/CACTA" gene complement(599015..600719) /locus_tag="TCM_021652" /note="dbxref CacaoGD:Thecc1EG021652" mRNA complement(join(599015..599698,599790..599953, 600061..600719)) /locus_tag="TCM_021652" /product="Thiamine pyrophosphate dependent pyruvate decarboxylase family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g29190.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021649t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s12760.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g781t1" CDS complement(join(599044..599698,599790..599953, 600061..600585)) /locus_tag="TCM_021652" /note="paralog of Thecc1EG021649t1" /codon_start=1 /product="Thiamine pyrophosphate dependent pyruvate decarboxylase family protein" /protein_id="EOY07139.1" /db_xref="Phytozome:POPTR_0016s12760.1" /db_xref="TAIR:AT4G33070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10MW3" /translation="MDTKIGSVDICKPTSNDIGSPPNGIVATIQGSVSPTVINSSEAT LGRHLARRLVQVGVTDVFSVPGDFNLTLLDHLIAEPELKLIGCCNELNAGYAADGYAR SRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDFGTNRILHHTIGLPD FSQELRCFQTVTCYQAVVNNLEDAHELIDTAISTALKESKPVYISISCNLAAIPHATF SREPVAFSLCPKLSNKMGLEAAVEATAEFLNKAVKPVLVGGPKLRVAKACEAFVNLAD ASGYALAVMPSAKGLVPEHHPRFIGTYWGAVSTAFCAEIVESADAYLFAGPIFSDHSS VGYSLLLKKEKAIIVQPDRVVIASGPAFGCVLMKDFLGALAKRLKHNNTAYENYHRIF VTQGHPLKASPREPLRVNIMFQHIQNLLSSETAVIVETGDSWFNCQKLKLPGGCG" mobile_element complement(602299..602520) /note="source:CACAO_on_E52_scaffold_7 3864 4094" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(602501..602658) /note="source:CACAO_PIF_E465_scaffold_115 6266 6426" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(604042..605926) /locus_tag="TCM_021653" /note="dbxref CacaoGD:Thecc1EG021653" mRNA complement(join(604042..604500,604685..604768, 604865..604939,605134..605572,605825..605926)) /locus_tag="TCM_021653" /product="Thiamine pyrophosphate dependent pyruvate decarboxylase family protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021649t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s12760.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.60 coverage" CDS complement(join(604071..604500,604685..604768, 604865..604939,605134..605572,605825..605885)) /locus_tag="TCM_021653" /note="paralog of Thecc1EG021649t1" /codon_start=1 /product="Thiamine pyrophosphate dependent pyruvate decarboxylase family protein" /protein_id="EOY07140.1" /db_xref="Phytozome:POPTR_0016s12760.1" /db_xref="TAIR:AT4G33070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10MW3" /translation="MVSQTGGRHCSSETDTCFAPGPVSPTVINSSEATLGRHLARRLV HVGVTDVFSVPGDFNLTLLDHLIAELELNLIGCCNELKAGYAADGYAWSRGVGACVVT FTVGGLSVLNGIAGAYSESLPLICIVGGPNSNDFGTNRILHHTIGLPDFSQELRCFET VTCHQAIISCNLAVIPHPTFSLEPVPLSLSPTLSNKMGLEAAVEATAESLNKAVKPGF SRAVSTAFCAEIVESADAYLFAGPTFNDHSSVGYSPLLKKVKAINVQPDRVVIANGRA FGCVLMKDFLGALAKRVKHNNTADENYHMIFVTEGHPLKASPREPLRVNILFQNIQNL LSSETAVIAETGDSWFNCQKLKLARGCG" mobile_element complement(606791..607249) /note="source:CACAO_Mariner_E176_scaffold_6 3896 4343" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene complement(612975..617649) /locus_tag="TCM_021655" /note="dbxref CacaoGD:Thecc1EG021655" mRNA complement(join(612975..613211,613512..613678, 613766..614344,614689..615042,615311..615652, 615743..616290,616568..616641,616999..617054, 617408..617649)) /locus_tag="TCM_021655" /product="DNAJ heat shock N-terminal domain-containing protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s12750.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s12750.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc368t10" CDS complement(join(614051..614344,614689..615042, 615311..615652,615743..616290,616568..616641, 616999..617054,617408..617497)) /locus_tag="TCM_021655" /codon_start=1 /product="DNAJ heat shock N-terminal domain-containing protein" /protein_id="EOY07141.1" /db_xref="Phytozome:POPTR_0016s12750.1" /db_xref="TAIR:AT3G08970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SR96" /translation="MEIRPPPLSFVILSTLLLLYAEAKTIDPYKVLGVEKNAGQREIQ KAFHKLSLQYHPDKNKNQGAQEKFAEINNAYDILSDEEKRKNYDMYGDEKGAPGFGAG HPGDGGGYTYFTSGGPGQSGFTSGSGGWQHMGRQGSSRTFSFSFGGPGGSRSFGGGGG PSSFGFDLNDIFSGFFRGGMKDQGQFGGFGGSSRSQSQSRSSPKSIRAINSEVFRKEI ADQGMTWLLLSYTPSLQGKQYYESIIEEVASLLQGAIKVGSINCETESTFCKDLGMHP GRTPRLLVYSYKGSEKGSLEEYKGDLIAKNIKTFCQEHLPRFSKRISLNHLDLSSSNV ETYPRVMLFSTKKDTPVIWRVLSGLYHKRFIFYDAEVHDVSDPAVKKLGVDALPAIIG CLSNGEKQILKSGISVKDLKSAIQDLSTLLDSFEKNNKKVASSQTRKMQTDSTEGQLP LLMASNFEALCGEKTPLCIIGAFRSSRAREKLDSLLSKVSQKSLSRRQNQSVASGSRD SISYMLLDATKQPSFLSAFDKSGFKSSDNIVVAYKPRKRKFAAYMGDMTMEEVEMFIG SVLNGDVQFTRTRQKPVLK" gene 619318..629160 /locus_tag="TCM_021656" /note="dbxref CacaoGD:Thecc1EG021656" mRNA join(619318..619850,619959..620068,620274..620346, 620624..620685,620801..620942,621293..621511, 621650..621716,622285..622684,622974..623121, 623249..623409,623667..623766,624414..624488, 624606..624740,625183..625272,625641..625823, 625911..626015,626637..626795,627191..627578, 627821..627927,628022..628078,628175..628247, 628333..628584,628804..628827) /locus_tag="TCM_021656" /product="ARM repeat superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:29601.m000444" /inference="similar to AA sequence:ricco:29601.m000444" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1110t5; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1110t10; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1056t12" mRNA join(619318..619850,619959..620068,620274..620346, 620624..620685,620801..620942,621293..621511, 621650..621716,622285..622684,622974..623121, 623249..623409,623667..623766,624414..624488, 624606..624740,625183..625272,625641..625823, 625911..626015,626637..626795,627191..627235, 627357..627578,627821..627927,628022..628078, 628175..628231,628333..628584,628804..628827) /locus_tag="TCM_021656" /product="ARM repeat superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29601.m000444" /inference="similar to AA sequence:ricco:29601.m000444" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1110t6; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1110t10; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1056t12" mRNA join(619318..619850,619959..620068,620274..620346, 620624..620685,620801..620942,621293..621511, 621650..621716,622285..622684,622974..623121, 623249..623409,623667..623766,624414..624488, 624606..624740,625183..625272,625641..625823, 625911..626015,626189..626392) /locus_tag="TCM_021656" /product="ARM repeat superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:29601.m000444" /inference="similar to AA sequence:frave:gene29851" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1110t7; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1110t10; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1056t12" mRNA join(619366..619850,619959..620068,620274..620346, 620624..620685,620801..620942,621056..621115, 621293..621511,621650..621716,622285..622684, 622974..623121,623249..623409,623667..623766, 624414..624488,624606..624740,625183..625272, 625641..625823,625911..626015,626553..626795, 627191..627235,627357..627578,627821..627927, 628022..628078,628175..628247,628333..628584, 628804..629160) /locus_tag="TCM_021656" /product="ARM repeat superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29601.m000444" /inference="similar to AA sequence:ricco:29601.m000444" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1110t10" CDS join(619710..619850,619959..620068,620274..620346, 620624..620685,620801..620942,621056..621115, 621293..621511,621650..621716,622285..622684, 622974..623121,623249..623409,623667..623766, 624414..624488,624606..624740,625183..625272, 625641..625823,625911..626015,626553..626795, 627191..627235,627357..627578,627821..627927, 628022..628078,628175..628247,628333..628497) /locus_tag="TCM_021656" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29601.m000444" /codon_start=1 /product="ARM repeat superfamily protein isoform 1" /protein_id="EOY07142.1" /db_xref="TAIR:AT3G08960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IYK6" /translation="MAFSASDLPAIYSLLANSMSQDETIRKPAEAALSQSESRPGFCS CLMEVITAKDLASQVDVRLMASVYFKNSINRYWRNRRDSSGISSEEKVHLRQKLLSHL REEKYQIAQMLAVLISKIARFDYPREWAELFSFLAQQLQSADVLTSHRIFMILFRTLK ELSTKRLTADQRNFAETGCLSLDSIGLKGIVMLMTNISSHLFEYCWHLWQSDVQTILH GFSTITQSYNSNAEEQHHDDLYLMCERWLLCLKIICQLVISGFQSDAKCVQEVRPVKE VSPVLLNAVQSFLPYYTSFQNGHPKFWDFIKRACTKLMKVLVAIQQRHPYSFGDKCVL QPVLNFCLNKITDPEPDILSFEEFLIKCMVMVKSVLECKEYKPSLTGRVMEENGVTLE QMKKNLSNAVAGVLTSLLPNERIILLCNVLIRRYFVLTASDLEEWYVNPEAFHHEQDM VQWTEKLRPCAEALYIVLFENHSQLLAPIVVSVLQEAMNGCPTSVTEITPGLLLKEAA YGAAAYVYYELSNYLSFKDWFNGALSLELSNDHPIMRIIHRKVALILGQWVSEIKNDT KRAVYCALIRLLQDKDLSVRLAACRSLCLHVEDANFSEQDFSDLLPVCWGSCFNLVKE VQEFDSKVQVLNLISVLLGHVNEVIPYANNLMQFFQMVWEESSGESLLQIQLLIALRN FVVALGYQSPSCYSMLLPILQKGIDINSPDEINLLEDSMLLWEATLSHAPAMVPQLLA YFPCLVEILERNFDQLQSYKSLLAAPTPFVSPAILYLILMRICLQVAVNITEAYIILG GREFLSMHASSVAKLLDLIVGNVNDRGLLATFPVIDILIQCFPMDVPPLISSTLQKLL VICLSGGDDGDPSKTAVKASSAAILARILVMNTNYLAQLTAEPSLSSLLQQTGVNIEE NILLCLVDVWLDKVDNVSSPQKKIFGLALSIILTLRLPQVLDKLDQILSVCTSVILGG TDDLTEEESSGDNMSSSRSHGEGSLPSKELRRRQIKFSDPINQLSLENSVRDNLQTCA ALHGDPSFNSAIGRMHPSAFAQLKQALKMP" CDS join(619710..619850,619959..620068,620274..620346, 620624..620685,620801..620942,621293..621511, 621650..621716,622285..622684,622974..623121, 623249..623409,623667..623766,624414..624488, 624606..624740,625183..625272,625641..625823, 625911..626015,626637..626795,627191..627235, 627357..627578,627821..627927,628022..628078, 628175..628231,628333..628381) /locus_tag="TCM_021656" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29601.m000444" /codon_start=1 /product="ARM repeat superfamily protein isoform 2" /protein_id="EOY07143.1" /db_xref="TAIR:AT3G08960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IYK6" /translation="MAFSASDLPAIYSLLANSMSQDETIRKPAEAALSQSESRPGFCS CLMEVITAKDLASQVDVRLMASVYFKNSINRYWRNRRDSSGISSEEKVHLRQKLLSHL REEKYQIAQMLAVLISKIARFDYPREWAELFSFLAQQLQSADVLTSHRIFMILFRTLK ELSTKRLTADQRNFAEISSHLFEYCWHLWQSDVQTILHGFSTITQSYNSNAEEQHHDD LYLMCERWLLCLKIICQLVISGFQSDAKCVQEVRPVKEVSPVLLNAVQSFLPYYTSFQ NGHPKFWDFIKRACTKLMKVLVAIQQRHPYSFGDKCVLQPVLNFCLNKITDPEPDILS FEEFLIKCMVMVKSVLECKEYKPSLTGRVMEENGVTLEQMKKNLSNAVAGVLTSLLPN ERIILLCNVLIRRYFVLTASDLEEWYVNPEAFHHEQDMVQWTEKLRPCAEALYIVLFE NHSQLLAPIVVSVLQEAMNGCPTSVTEITPGLLLKEAAYGAAAYVYYELSNYLSFKDW FNGALSLELSNDHPIMRIIHRKVALILGQWVSEIKNDTKRAVYCALIRLLQDKDLSVR LAACRSLCLHVEDANFSEQDFSDLLPVCWGSCFNLVKEVQEFDSKVQVLNLISVLLGH VNEVIPYANNLMQFFQMVWEESSGESLLQIQLLIALRNFVVALGYQSPSCYSMLLPIL QKGIDINSPDEINLLEDSMLLWEATLSHAPAMVPQLLAYFPCLVEILERNFDQLQVAV NITEAYIILGGREFLSMHASSVAKLLDLIVGNVNDRGLLATFPVIDILIQCFPMDVPP LISSTLQKLLVICLSGGDDGDPSKTAVKASSAAILARILVMNTNYLAQLTAEPSLSSL LQQTGVNIEENILLCLVDVWLDKVDNVSSPQKKIFGLALSIILTLRLPQVLDKLDQIL SVCTSVILGGTDDLTEEESSGDNMSSSRSHGEGSLPSKESSSQTLSTSCHWKTQ" CDS join(619710..619850,619959..620068,620274..620346, 620624..620685,620801..620942,621293..621511, 621650..621716,622285..622684,622974..623121, 623249..623409,623667..623766,624414..624488, 624606..624740,625183..625272,625641..625823, 625911..626015,626637..626795,627191..627346) /locus_tag="TCM_021656" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29601.m000444" /codon_start=1 /product="ARM repeat superfamily protein isoform 3" /protein_id="EOY07144.1" /db_xref="TAIR:AT3G08960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IYK6" /translation="MAFSASDLPAIYSLLANSMSQDETIRKPAEAALSQSESRPGFCS CLMEVITAKDLASQVDVRLMASVYFKNSINRYWRNRRDSSGISSEEKVHLRQKLLSHL REEKYQIAQMLAVLISKIARFDYPREWAELFSFLAQQLQSADVLTSHRIFMILFRTLK ELSTKRLTADQRNFAEISSHLFEYCWHLWQSDVQTILHGFSTITQSYNSNAEEQHHDD LYLMCERWLLCLKIICQLVISGFQSDAKCVQEVRPVKEVSPVLLNAVQSFLPYYTSFQ NGHPKFWDFIKRACTKLMKVLVAIQQRHPYSFGDKCVLQPVLNFCLNKITDPEPDILS FEEFLIKCMVMVKSVLECKEYKPSLTGRVMEENGVTLEQMKKNLSNAVAGVLTSLLPN ERIILLCNVLIRRYFVLTASDLEEWYVNPEAFHHEQDMVQWTEKLRPCAEALYIVLFE NHSQLLAPIVVSVLQEAMNGCPTSVTEITPGLLLKEAAYGAAAYVYYELSNYLSFKDW FNGALSLELSNDHPIMRIIHRKVALILGQWVSEIKNDTKRAVYCALIRLLQDKDLSVR LAACRSLCLHVEDANFSEQDFSDLLPVCWGSCFNLVKEVQEFDSKVQVLNLISVLLGH VNEVIPYANNLMQFFQMVWEESSGESLLQIQLLIALRNFVVALGYQSPSCYSMLLPIL QKGIDINSPDEINLLEDSMLLWEATLSHAPAMVPQLLAYFPCLVEILERNFDQLQVAV NITEAYIILGGREFLSMHASSVAKLLDLIVGNVNDRGLLATFPVIDILIQCFPMDVPP LISSTLQVSMVLYLQRFFIVHVLSYICHYICLFITFHSTVMPC" CDS join(619710..619850,619959..620068,620274..620346, 620624..620685,620801..620942,621293..621511, 621650..621716,622285..622684,622974..623121, 623249..623409,623667..623766,624414..624488, 624606..624740,625183..625272,625641..625823, 625911..626015,626189..626203) /locus_tag="TCM_021656" /note="encoded by transcript variant 4; alternatively spliced; dbxref frave:gene29851" /codon_start=1 /product="ARM repeat superfamily protein isoform 4" /protein_id="EOY07145.1" /db_xref="TAIR:AT3G08960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IYK6" /translation="MAFSASDLPAIYSLLANSMSQDETIRKPAEAALSQSESRPGFCS CLMEVITAKDLASQVDVRLMASVYFKNSINRYWRNRRDSSGISSEEKVHLRQKLLSHL REEKYQIAQMLAVLISKIARFDYPREWAELFSFLAQQLQSADVLTSHRIFMILFRTLK ELSTKRLTADQRNFAEISSHLFEYCWHLWQSDVQTILHGFSTITQSYNSNAEEQHHDD LYLMCERWLLCLKIICQLVISGFQSDAKCVQEVRPVKEVSPVLLNAVQSFLPYYTSFQ NGHPKFWDFIKRACTKLMKVLVAIQQRHPYSFGDKCVLQPVLNFCLNKITDPEPDILS FEEFLIKCMVMVKSVLECKEYKPSLTGRVMEENGVTLEQMKKNLSNAVAGVLTSLLPN ERIILLCNVLIRRYFVLTASDLEEWYVNPEAFHHEQDMVQWTEKLRPCAEALYIVLFE NHSQLLAPIVVSVLQEAMNGCPTSVTEITPGLLLKEAAYGAAAYVYYELSNYLSFKDW FNGALSLELSNDHPIMRIIHRKVALILGQWVSEIKNDTKRAVYCALIRLLQDKDLSVR LAACRSLCLHVEDANFSEQDFSDLLPVCWGSCFNLVKEVQEFDSKVQVLNLISVLLGH VNEVIPYANNLMQFFQMVWEESSGESLLQIQLLIALRNFVVALGYQSPSCYSMLLPIL QKGIDINSPDEINLLEDSMLLWEATLSHAPAMVPQLLAYFPCLVEILERNFDQLQAMN I" gene complement(629486..632185) /locus_tag="TCM_021657" /note="dbxref CacaoGD:Thecc1EG021657" mRNA complement(join(629486..630171,631316..631441, 631570..631706,631780..631785,631817..632024)) /locus_tag="TCM_021657" /product="Ran-binding protein 1 b isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024705001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042170t1" /inference="similar to AA sequence:Phytozome:POPTR_0009s07750.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc213t16; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc213t19; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g12991t1" mRNA complement(join(629644..630171,631316..631441, 631570..631721,631817..632185)) /locus_tag="TCM_021657" /product="Ran-binding protein 1 b isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024705001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042170t1" /inference="similar to AA sequence:Phytozome:POPTR_0009s07750.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g12991t1" CDS complement(join(629936..630171,631316..631441, 631570..631721,631817..631983)) /locus_tag="TCM_021657" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042170t1" /codon_start=1 /product="Ran-binding protein 1 b isoform 1" /protein_id="EOY07146.1" /db_xref="Phytozome:POPTR_0009s07750.1" /db_xref="TAIR:AT2G30060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RWG8" /translation="MASTAKTDPEEHKREDEENAPAADDEDTGAQVAPIVKLEEVAVS TGEEDEDPILDLKAKLYRFDKEGNQWKERGVGSVKLLKHKVSGKVRLVMRQSKTLKIC ANHLVLPTMTVQEHAGNDKSCVWHATDFADGELKEEMFCIRFASVENCKSFMEMVQEV AESQGKKEENKDATATADLLEKLTVEESKTDGKEPEEKAAASEDKEEDAAATEEKAKT EDEPASKA" CDS complement(join(629936..630171,631316..631441, 631570..631706,631780..631785,631817..631983)) /locus_tag="TCM_021657" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042170t1" /codon_start=1 /product="Ran-binding protein 1 b isoform 2" /protein_id="EOY07147.1" /db_xref="Phytozome:POPTR_0009s07750.1" /db_xref="TAIR:AT2G30060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RWG8" /translation="MASTAKTDPEEHKREDEENAPAADDEDTGAQVAPIVKLEEVAVS TGEEDEDPILDLNFRFDKEGNQWKERGVGSVKLLKHKVSGKVRLVMRQSKTLKICANH LVLPTMTVQEHAGNDKSCVWHATDFADGELKEEMFCIRFASVENCKSFMEMVQEVAES QGKKEENKDATATADLLEKLTVEESKTDGKEPEEKAAASEDKEEDAAATEEKAKTEDE PASKA" gene complement(632833..637237) /locus_tag="TCM_021658" /note="dbxref CacaoGD:Thecc1EG021658" mRNA complement(join(632833..633291,633411..633590, 633696..634008,634103..634318,636035..636188, 636286..636435,636541..636625,636749..636862, 636989..637237)) /locus_tag="TCM_021658" /product="Metallopeptidase M24 family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29601.m000446" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400052850" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:PASA:2:TSA:puevd3b020951t1a2; inference alignment:Newbler:10:TSA:cgbaL_g08908t00001" mRNA complement(join(632833..633291,633411..633590, 633696..633787,633872..634008,634103..634318, 636035..636188,636286..636435,636541..636625, 636749..636862,636989..637129)) /locus_tag="TCM_021658" /product="Metallopeptidase M24 family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29601.m000446" /inference="similar to AA sequence:Phytozome:GSVIVT01003934001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaL_g08908t00001" CDS complement(join(633215..633291,633411..633590, 633696..633787,633872..634008,634103..634318, 636035..636188,636286..636435,636541..636625, 636749..636839)) /locus_tag="TCM_021658" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Metallopeptidase M24 family protein isoform 1" /protein_id="EOY07148.1" /db_xref="Phytozome:GSVIVT01003934001" /db_xref="TAIR:AT3G51800.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IGC6" /translation="MSDDEREEKELDLTSPEVVTKYKSAAEIVNKALQLVVKDCKPKA KIVDICEKGDVFIREQTGNMYKNVKRKIERGVAFPTCISVNNTVCHISPLASDTSELE EGDMVKIDLGCHIDGFIAIVAHTHVVQDGPITGRQADVVAAVNTAAEVALRLVRPGKK NKDVTDAIQKVAAAYDCKIVEGVLSHQLKQFVIDGNKVILSVSNPDTRVDDAEFEENE VYAVDIVASTGEGKPKLLDEKQTTIYKRAVDKNYHLKMKTSRFIFSEINQKFPILPFT ARALEEKRARLGLVECVNHDLLQPYPVLHEKPGDYVAHIKFTVLLMPNGSDRVTSHPL QELQPTKTIDDPEIKAWLALGTKTKKKGGGKKKKGKKGDKAEESAEAEPMDEATNGAT S" CDS complement(join(633844..634008,634103..634318, 636035..636188,636286..636435,636541..636625, 636749..636839)) /locus_tag="TCM_021658" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Metallopeptidase M24 family protein isoform 2" /protein_id="EOY07149.1" /db_xref="Phytozome:PGSC0003DMP400052850" /db_xref="TAIR:AT3G51800.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IGC6" /translation="MSDDEREEKELDLTSPEVVTKYKSAAEIVNKALQLVVKDCKPKA KIVDICEKGDVFIREQTGNMYKNVKRKIERGVAFPTCISVNNTVCHISPLASDTSELE EGDMVKIDLGCHIDGFIAIVAHTHVVQDGPITGRQADVVAAVNTAAEVALRLVRPGKK NKDVTDAIQKVAAAYDCKIVEGVLSHQLKQFVIDGNKVILSVSNPDTRVDDAEFEENE VYAVDIVASTGEGKPKLLDEKQTTIYKRAVDKNYHLKMKTSRFIFSEINQKFPILPFT ARSVIVSHLL" gene 638424..640015 /locus_tag="TCM_021659" /note="dbxref CacaoGD:Thecc1EG021659" mRNA join(638424..638590,639134..639305,639399..640015) /locus_tag="TCM_021659" /product="Stress induced protein" /inference="alignment:exonerate- protein:2:ricco:29601.m000448" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042481t1" /inference="similar to AA sequence:ricco:29601.m000448" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g365t1" CDS join(638456..638590,639134..639305,639399..639616) /locus_tag="TCM_021659" /note="dbxref ricco:29601.m000448; paralog of Thecc1EG042481t1" /codon_start=1 /product="Stress induced protein" /protein_id="EOY07150.1" /db_xref="TAIR:AT3G51810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q02400" /translation="MKSSHLTRQQIVWATTSFCSRNFAGALQRQFDGNLVVITKLPEV KFPSCVKETSKAAPKRAKVIMASQQDREELDARARLGETVVPGGTGGKSLAAQEHLAE GRSRGGQTRKEQLGREGYQELGSKGGQTRKEQIGTEGYQEMGRKGGLSTMDKSGGERA AEKGIHIDESKYRT" gene complement(640093..644351) /locus_tag="TCM_021660" /note="dbxref CacaoGD:Thecc1EG021660" mRNA complement(join(640093..640529,640819..640869, 640973..641049,641158..641239,641383..641445, 641533..641608,642079..642140,642240..642323, 642404..642469,642536..642622,642721..642806, 643090..643177,643602..643690,643792..643836, 644038..644351)) /locus_tag="TCM_021660" /product="UbiA prenyltransferase family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29601.m000449" /inference="similar to AA sequence:frave:gene13467" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g409t3; inference alignment:Newbler:10:TSA:cgbaB_g08152t00001" mRNA complement(join(640148..640529,640819..640866, 640973..641049,641158..641239,641383..641445, 641533..641689,642079..642140,642240..642323, 642404..642469,642536..642622,642721..642806, 643090..643177,643602..643690,643792..643836, 644038..644305)) /locus_tag="TCM_021660" /product="UbiA prenyltransferase family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29601.m000449" /inference="similar to AA sequence:frave:gene13467" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08152t00001" CDS complement(join(640467..640529,640819..640869, 640973..641049,641158..641239,641383..641445, 641533..641608,642079..642140,642240..642323, 642404..642469,642536..642622,642721..642806, 643090..643177,643602..643690,643792..643836, 644038..644164)) /locus_tag="TCM_021660" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene13467" /codon_start=1 /product="UbiA prenyltransferase family protein isoform 2" /protein_id="EOY07152.1" /db_xref="TAIR:AT3G51820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q38833" /translation="MSSVLNTVSSLRLSRIYRNYSNNNHLRVPTQSVSTPASVSFTRR KLTVRAADTDTNEVKSKAPDKAPAGGGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTW PPLVWGVVCGAAASGNFHWNLEDVAKSILCMIMSGPCLTGYTQTLNDWYDREIDAINE PYRPIPSGAISENEVVTQIWLLLLGGIGIAGLLDVWAGHDIPIVFYLALGGSLLSYIY SAPPLKLKQNGWFGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGFGIAIV NDFKSVEGDKALGLQSIPVAFGAETAKWICVGAIDITQISVAGYLLGAGKPYYALALL ALIVPQVVFQQFQYFLKDPVKYDVKYQASAQPFLVLGLLVTALAMSH" CDS complement(join(640467..640529,640819..640866, 640973..641049,641158..641239,641383..641445, 641533..641689,642079..642140,642240..642323, 642404..642469,642536..642622,642721..642806, 643090..643177,643602..643690,643792..643836, 644038..644164)) /locus_tag="TCM_021660" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene13467" /codon_start=1 /product="UbiA prenyltransferase family protein isoform 1" /protein_id="EOY07151.1" /db_xref="TAIR:AT3G51820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q38833" /translation="MSSVLNTVSSLRLSRIYRNYSNNNHLRVPTQSVSTPASVSFTRR KLTVRAADTDTNEVKSKAPDKAPAGGGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTW PPLVWGVVCGAAASGNFHWNLEDVAKSILCMIMSGPCLTGYTQTLNDWYDREIDAINE PYRPIPSGAISENEVVTQIWLLLLGGIGIAGLLDVWAGHDIPIVFYLALGGSLLSYIY SAPPLKLKQNGWFGNFALGASYISLPCLFTLFGYVLKYVTYILDFHFVPNLANRWAGQ ALFGTLTPDIIVLTLLYSIAGFGIAIVNDFKSVEGDKALGLQSIPVAFGAETAKWICV GAIDITQISVAGYLLGAGKPYYALALLALIVPQVVFQFQYFLKDPVKYDVKYQASAQP FLVLGLLVTALAMSH" gene complement(645824..646964) /locus_tag="TCM_021661" /note="dbxref CacaoGD:Thecc1EG021661" mRNA complement(645824..646964) /locus_tag="TCM_021661" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is paralog medium, intron is none, protein is utrpoor_complete" CDS complement(646105..646410) /locus_tag="TCM_021661" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07153.1" /translation="MPFIIFCGVDSLPLFFNYPSEFNGNDEAECKETRRFPFWFTAPA RISCCILVPISWRLFNNFVRNFARNHMIHPEDDDYLETVRLNSYTLGFTCALVLSLY" mobile_element complement(649497..652409) /note="source:CACAO_M_E69760_F9_scaffold_9 6707 9651" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 656833..657775 /locus_tag="TCM_021664" /note="dbxref CacaoGD:Thecc1EG021664" mRNA join(656833..657245,657363..657775) /locus_tag="TCM_021664" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g382t1" CDS join(657199..657245,657363..657486) /locus_tag="TCM_021664" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07154.1" /translation="MFSAYGNRWDSSETSRDQIYKLQDLQSRNMPVPNNEPLEIEALI CDFHKFNTFYMV" gene complement(658664..661499) /locus_tag="TCM_021665" /note="dbxref CacaoGD:Thecc1EG021665" mRNA complement(join(658664..659178,661030..661499)) /locus_tag="TCM_021665" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021667t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.25 coverage" CDS complement(658709..659095) /locus_tag="TCM_021665" /note="paralog of Thecc1EG021667t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07155.1" /translation="MALPFFFLCPRSLCMARVHCHFFFNYLWHGSEFNGSDKAECKET GRFPVCFTAAASILCYILVPISWRLLKNFIGNLVKHPDPNGALATVLVLPFLFGFCVI LLKHSSEFRYREEILEDCKEFSKFRY" gene 662413..663406 /locus_tag="TCM_021666" /note="dbxref CacaoGD:Thecc1EG021666" mRNA join(662413..662658,662774..662881,662978..663406) /locus_tag="TCM_021666" /product="Uncharacterized protein" /note="quality class is strong-utrpoor, express is strong, homology is none, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1718t1" CDS 663169..663369 /locus_tag="TCM_021666" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07156.1" /translation="MFSMYLRLVLQFVLSGALIVISMVQLAFQEYHKNLNLPLSTISL WISFITTDFHFTTNAKIFRTLT" gene complement(665821..666863) /locus_tag="TCM_021667" /note="dbxref CacaoGD:Thecc1EG021667" mRNA complement(join(665821..666647,666782..666863)) /locus_tag="TCM_021667" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021665t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g380t1" CDS complement(666053..666631) /locus_tag="TCM_021667" /note="paralog of Thecc1EG021665t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07157.1" /translation="MKHDEEENPPRIYLAAYIIMIGAPKFFGLMWFSLSLFKMELKLP EENHAQTPLVLAIILYYGFAFGFLMPSIIVYGAGSLSLFFNYLWHGSDKAECKETGRF PVCFTAAASILCYILVPASWRLLKNFIGNLVKHPDANGALATALVLPFLLGFCIIQML LSIPPNSDIEKKSSEIVKSSPNSDIDNIQPKS" gene 674757..683338 /locus_tag="TCM_021668" /note="dbxref CacaoGD:Thecc1EG021668" mRNA join(674757..675265,675882..676063,676173..676359, 676805..676983,677074..677125,677227..677354, 677448..677627,678037..678104,678206..678348, 678829..678890,679195..679308,679493..679633, 679751..679903,680194..680247,680324..680434, 680519..680692,680781..680861,681230..681603, 681699..683338) /locus_tag="TCM_021668" /product="AMP deaminase / myoadenylate deaminase, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s10290.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010011t1" /inference="similar to AA sequence:Phytozome:Glyma03g07460.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:PASA:2:TSA:puevd3b020959t1a3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g849t1" mRNA join(674757..675265,675882..676063,676173..676359, 676805..676983,677074..677125,677227..677354, 677448..677627,678037..678104,678206..678348, 678829..678890,679195..679308,679493..679633, 679751..679903,680194..680247,680324..680434, 680519..680692,680781..680861,681230..681328, 681482..683338) /locus_tag="TCM_021668" /product="AMP deaminase / myoadenylate deaminase, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s10290.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010011t1" /inference="similar to AA sequence:Phytozome:Glyma03g07460.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:PASA:2:TSA:puevd3b020959t1a2; alternateUTRof:Thecc1EG021668t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g849t1" mRNA join(674768..675265,675882..676063,676173..676359, 676805..676983,677074..677125,677227..677354, 677448..677627,678037..678104,678206..678348, 678829..678890,679195..679308,679493..679633, 679751..679903,680194..680247,680324..680434, 680519..680692,680781..680861,681230..681328, 681482..681603,681699..683338) /locus_tag="TCM_021668" /product="AMP deaminase / myoadenylate deaminase, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s10290.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010011t1" /inference="similar to AA sequence:Phytozome:Glyma03g07460.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g849t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g849t1" CDS join(674914..675265,675882..676063,676173..676359, 676805..676983,677074..677125,677227..677354, 677448..677627,678037..678104,678206..678348, 678829..678890,679195..679308,679493..679633, 679751..679903,680194..680247,680324..680434, 680519..680692,680781..680861,681230..681328, 681482..681550) /locus_tag="TCM_021668" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG010011t1" /codon_start=1 /product="AMP deaminase / myoadenylate deaminase, putative isoform 1" /protein_id="EOY07158.1" /db_xref="Phytozome:Glyma03g07460.1" /db_xref="TAIR:AT2G38280.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HCY3" /translation="MDTYTVHIAMAALVGASLVAVSAYYMHRKTLSQLLEFAKTVERE REEVSDGESPQHSKKRRGHHSRRKGNGYYRRGSASLPDVTVISGGIDGEEKRNGAIHV DGIPPGLPRLHTLPQGKSGAHATSAKRSSSLIRPTSPKSPVASASAFESIEGSDDEDN MTDNSKIDTTYLHTNGKAGPNLPDHINANGETIQIAASSMIRSHSVSGDLHGVQPDPI AADILRKEPEQETFARLRIAPTEVPSADEVEAYVVLQECLEMRKRYVFKEPVAPWEKE VISDPSTPKPNPEPFFYAPEEKSDHYFEMQDGVIHVYANKDSKEELFPVADATTFFTD LHHILRVIAAGNIRTLCHHRLNLLEQKFNLHLMLNADREFLAQKSAPHRDFYNVRKVD THVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDL LDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLGELTKQVFSDLAAS KYQMAEYRISIYGRKQSEWDQLASWIVNNDLYSENVVWLIQIPRLYNIYKEMGIVTSF QNILDNIFIPLFEVTVDPDSHPHLHVFLKQVVGLDLVDDESKPERRPTKHMPTPDQWT NVFNPAYSYYVYYCYANLYTLNKLRESKGMTTIKFRPHSGEAGDIDHLAATFLTAHNI AHGINLRKSPVLQYLYYLAQIGLAMSPLSNNSLFLDYHRNPFPMFFLRGLNVSLSTDD PLQIHLTKEPLVEEYSIAASVWKLSSCDLCEIARNSVYQSGFSHALKSHWIGKEYYKR GPDGNDIHRTNVPHIRLEFRDTIWKEEMQQVYLGKAIIPQEVDK" CDS join(674914..675265,675882..676063,676173..676359, 676805..676983,677074..677125,677227..677354, 677448..677627,678037..678104,678206..678348, 678829..678890,679195..679308,679493..679633, 679751..679903,680194..680247,680324..680434, 680519..680692,680781..680861,681230..681328, 681482..681550) /locus_tag="TCM_021668" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG010011t1" /codon_start=1 /product="AMP deaminase / myoadenylate deaminase, putative isoform 1" /protein_id="EOY07159.1" /db_xref="Phytozome:Glyma03g07460.1" /db_xref="TAIR:AT2G38280.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HCY3" /translation="MDTYTVHIAMAALVGASLVAVSAYYMHRKTLSQLLEFAKTVERE REEVSDGESPQHSKKRRGHHSRRKGNGYYRRGSASLPDVTVISGGIDGEEKRNGAIHV DGIPPGLPRLHTLPQGKSGAHATSAKRSSSLIRPTSPKSPVASASAFESIEGSDDEDN MTDNSKIDTTYLHTNGKAGPNLPDHINANGETIQIAASSMIRSHSVSGDLHGVQPDPI AADILRKEPEQETFARLRIAPTEVPSADEVEAYVVLQECLEMRKRYVFKEPVAPWEKE VISDPSTPKPNPEPFFYAPEEKSDHYFEMQDGVIHVYANKDSKEELFPVADATTFFTD LHHILRVIAAGNIRTLCHHRLNLLEQKFNLHLMLNADREFLAQKSAPHRDFYNVRKVD THVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDL LDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLGELTKQVFSDLAAS KYQMAEYRISIYGRKQSEWDQLASWIVNNDLYSENVVWLIQIPRLYNIYKEMGIVTSF QNILDNIFIPLFEVTVDPDSHPHLHVFLKQVVGLDLVDDESKPERRPTKHMPTPDQWT NVFNPAYSYYVYYCYANLYTLNKLRESKGMTTIKFRPHSGEAGDIDHLAATFLTAHNI AHGINLRKSPVLQYLYYLAQIGLAMSPLSNNSLFLDYHRNPFPMFFLRGLNVSLSTDD PLQIHLTKEPLVEEYSIAASVWKLSSCDLCEIARNSVYQSGFSHALKSHWIGKEYYKR GPDGNDIHRTNVPHIRLEFRDTIWKEEMQQVYLGKAIIPQEVDK" CDS join(674914..675265,675882..676063,676173..676359, 676805..676983,677074..677125,677227..677354, 677448..677627,678037..678104,678206..678348, 678829..678890,679195..679308,679493..679633, 679751..679903,680194..680247,680324..680434, 680519..680692,680781..680861,681230..681340) /locus_tag="TCM_021668" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG010011t1" /codon_start=1 /product="AMP deaminase / myoadenylate deaminase, putative isoform 3" /protein_id="EOY07160.1" /db_xref="Phytozome:Glyma03g07460.1" /db_xref="TAIR:AT2G38280.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HCY3" /translation="MDTYTVHIAMAALVGASLVAVSAYYMHRKTLSQLLEFAKTVERE REEVSDGESPQHSKKRRGHHSRRKGNGYYRRGSASLPDVTVISGGIDGEEKRNGAIHV DGIPPGLPRLHTLPQGKSGAHATSAKRSSSLIRPTSPKSPVASASAFESIEGSDDEDN MTDNSKIDTTYLHTNGKAGPNLPDHINANGETIQIAASSMIRSHSVSGDLHGVQPDPI AADILRKEPEQETFARLRIAPTEVPSADEVEAYVVLQECLEMRKRYVFKEPVAPWEKE VISDPSTPKPNPEPFFYAPEEKSDHYFEMQDGVIHVYANKDSKEELFPVADATTFFTD LHHILRVIAAGNIRTLCHHRLNLLEQKFNLHLMLNADREFLAQKSAPHRDFYNVRKVD THVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDL LDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLGELTKQVFSDLAAS KYQMAEYRISIYGRKQSEWDQLASWIVNNDLYSENVVWLIQIPRLYNIYKEMGIVTSF QNILDNIFIPLFEVTVDPDSHPHLHVFLKQVVGLDLVDDESKPERRPTKHMPTPDQWT NVFNPAYSYYVYYCYANLYTLNKLRESKGMTTIKFRPHSGEAGDIDHLAATFLTAHNI AHGINLRKSPVLQYLYYLAQIGLAMSPLSNNSLFLDYHRNPFPMFFLRGLNVSLSTDD PLQIHLTKEPLVEEYSIAASVWKLSSCDLCEIARNSVYQSGFSHALKSHWIGKEYYKR GPDGNDIHRTNVPHIRLEFRDTVGP" gene complement(682438..685391) /locus_tag="TCM_046796" /note="dbxref CacaoGD:Thecc1EG046796" mRNA complement(join(682438..683036,683462..683594, 683705..683794,684066..684278,684627..684717, 684807..685004,685099..685391)) /locus_tag="TCM_046796" /product="Electron transport SCO1/SenC family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g18460.1" /inference="similar to AA sequence:frave:gene20562" /note="quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaL_g09376t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc323t21" CDS complement(join(682922..683036,683462..683594, 683705..683794,684066..684278,684627..684717, 684807..685004,685099..685254)) /locus_tag="TCM_046796" /note="dbxref frave:gene20562" /codon_start=1 /product="Electron transport SCO1/SenC family protein" /protein_id="EOY07161.1" /db_xref="TAIR:AT3G08950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYP0" /translation="MASRAIWRSASRFRNFHVCLCTHTLRQCGSSVSFSPTIADYLRR PSLPFLQPVIPVGAGFKSLGICGRYLSSSAAASTSTSDNQEKSSSSSKANSEGTQSSG GSQQSGSDAGKPVRGGPVSWLSFLLLLATGMGIIFYYDKEKKRHIEEISNASKAVKEG PSAGKAAIGGPFSLINHDDKPVTEKDFLGKWTMIYFGFTHCPDICPDELQKLAAAVDK IKEKAGIEIVPVFISVDPERDTTEQVREYVKEFHPKLIGLTGTSDEIKKVARAYRVYY MKTAEEDSDYLVDHSIVMYLMDPNMEFVKFFGKNSDVDSLTDGVIKEIKQRKLKR" gene complement(685731..688131) /locus_tag="TCM_046797" /note="dbxref CacaoGD:Thecc1EG046797" mRNA complement(join(685731..686223,686312..686370, 686492..686553,687802..687904,688075..688131)) /locus_tag="TCM_046797" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s12630.2" /inference="similar to AA sequence:Phytozome:GSVIVT01011181001" /note="quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage" CDS complement(join(686209..686223,686312..686370, 686492..686553,687802..687878)) /locus_tag="TCM_046797" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07162.1" /db_xref="Phytozome:GSVIVT01011181001" /translation="MAGGNFMHRVISYVVNELVVDRLANSPAFQRFAVRTSKKIEDIS SMAVQKRQELAEQMKEITKDFESKNH" mobile_element complement(687125..687172) /note="source:CACAO_M_E22186_F143_scaffold_3 9946 9993" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(688883..691571) /locus_tag="TCM_021670" /note="dbxref CacaoGD:Thecc1EG021670" mRNA complement(join(688883..689866,689959..690117, 690334..690530,690622..690793,690889..691126, 691250..691571)) /locus_tag="TCM_021670" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s12660.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046948t1" /inference="similar to AA sequence:ricco:28176.m000265" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaL_g07410t00001" CDS complement(join(689533..689866,689959..690117, 690334..690530,690622..690793,690889..691126, 691250..691541)) /locus_tag="TCM_021670" /note="dbxref ricco:28176.m000265; paralog of Thecc1EG046948t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07163.1" /db_xref="TAIR:AT5G01360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IGB9" /translation="MGEKGSSHHSIAPAHTLYPTVELNSSHALPPTMSFAASPSTIMM KTYKGKLPLSIITVIVCSFAFLALLYAERLSFLSSSSILKSTSCARRSVVATAKDKTA EKNVENPEIDDRFEFDPEECNVANGKWVFNRSVKPLYTDRSCPYIDMQFACVRNGRLD FDYRHWEWQPEDCNLPRFRPELALKKLRGKRLVFSGDSLQRNQWESFVCMIEWTIPPE KKSMKRGRVRSVFKAKEYNATIEFYWAPFLIESNTDIDVLEPKKRILKVDSVANHSKH WEGADILAFNTYVWWMSGLRLKTLWGSFANGEEGYTVLDTPVAYKVGLKTWANWIDST INPNKTRVFFTTISPVHTRSQDWGKEDGLKCFNETKPVMKKKFWGSGSDKKMMSVVDG VLKKMKVPVTVLNITQLSEYRIDAHSSIYTETGGRLLTDEEKADPRRHADCIHWCLPG VPDTWNQILLAHL" gene 692081..697142 /locus_tag="TCM_021671" /note="dbxref CacaoGD:Thecc1EG021671" mRNA join(692081..692219,694326..694806,695785..696596, 697113..697142) /locus_tag="TCM_021671" /product="CAX-interacting protein 2" /inference="alignment:exonerate- protein:2:ricco:28176.m000266" /inference="similar to AA sequence:Phytozome:GSVIVT01011178001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05050t00001" CDS join(692128..692219,694326..694806,695785..696288) /locus_tag="TCM_021671" /codon_start=1 /product="CAX-interacting protein 2" /protein_id="EOY07164.1" /db_xref="Phytozome:GSVIVT01011178001" /db_xref="TAIR:AT2G38270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T1J0" /translation="MLSSWSIFNSLEGKKKKRKTFSGLNTSHLDRTKNKNKNGNSLPS SSNFQADAKNPGFSKALFRMAAFNLSPLPSSSLRVLSSHHPRNTPTLSFYSRFTPSLS FPSVSLRPLTSKKPRSCIISSALKNLSEVEPVSFPEKPEEFVAKFPSDAGVYAVFDQN DDLQFIGISRNIAGSLFNHKKSVSELCGSVKVGVVNEPDRAALTQAWKSWMEEHIKTT GKVPPGNESGNTTWARQPPKTKPDLRLTPGRHVQLTVPLEELINKLVKENRVVAFIKG SRSAPMCGFSQRVIAILESQGVDYESVDVLDEEYNYGLRDTLKQYSNWPTFPQVFVNG ELVGGCDILTSMYEKGELAGLFKN" gene 697191..703724 /locus_tag="TCM_021672" /note="dbxref CacaoGD:Thecc1EG021672" mRNA join(697191..697948,698202..698276,698402..698529, 698634..698725,698818..698875,699381..699437, 699649..699751,699864..699950,700038..700144, 700494..700580,700693..700770,701083..701147, 701560..701658,701764..701863,702036..702144, 702234..702306,702397..702490,702600..702686, 702809..702875,703073..703724) /locus_tag="TCM_021672" /product="SAC domain-containing protein 8 isoform 1" /inference="alignment:exonerate- protein:2:ricco:28176.m000267" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000073t3" /inference="similar to AA sequence:Phytozome:GSVIVT01011177001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g499t2" mRNA join(697672..697894,698202..698276,698402..698529, 698634..698725,698818..698875,699378..699437, 699649..699682,699870..699950,700038..700144, 700494..700580,700693..700770,701083..701147, 701560..701658,701764..701863,702036..702144, 702234..702306,702397..702490,702600..702686, 702809..702875,703073..703408) /locus_tag="TCM_021672" /product="SAC domain-containing protein 8 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma18g43270.1" /inference="alignment:exonerate- protein:2:ricco:28176.m000267" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000073t3" /inference="similar to AA sequence:ricco:28176.m000267" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g499t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g499t2" mRNA join(697672..697894,698202..698276,698402..698529, 698634..698725,698818..698875,699381..699437, 699649..699682,699870..699950,700038..700144, 700494..700580,700693..700770,701083..701147, 701560..701658,701764..701863,702036..702144, 702234..702306,702397..702490,702600..702686, 702809..702875,703073..703408) /locus_tag="TCM_021672" /product="SAC domain-containing protein 8 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma18g43270.1" /inference="alignment:exonerate- protein:2:ricco:28176.m000267" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000073t3" /inference="similar to AA sequence:ricco:28176.m000267" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g499t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g499t2" CDS join(697744..697948,698202..698276,698402..698529, 698634..698725,698818..698875,699381..699437, 699649..699751,699864..699950,700038..700144, 700494..700580,700693..700770,701083..701147, 701560..701658,701764..701863,702036..702144, 702234..702306,702397..702490,702600..702686, 702809..702875,703073..703200) /locus_tag="TCM_021672" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG000073t3" /codon_start=1 /product="SAC domain-containing protein 8 isoform 1" /protein_id="EOY07165.1" /db_xref="Phytozome:GSVIVT01011177001" /db_xref="TAIR:AT3G51830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BMH3" /translation="MEIGSSSGNFKLYDRLELLEYQDKFVIKSVESPDQGFSICRREG NIEPLSGKFLILLFFLYLRFAEILNESSSGRPSKISTIYGVAGTIRLLAGIYVLVITS RKEVGSFLGYPVYRVESMKFLACNEALRYSNSQEKRDEAYFMTLLKTVEATPGLYYSY ETDITLNLQRRCKLMEGWMSKSIWKQADPRFVWNKHLLEELIEYKLDGFIIPLLQGNI LKLLFPRAFELICMCVACACICLSFQVAQLKLKNSPATFTLLSRRCTRRLGTRMWRRG ANLEGDTANFIETEQLLELEGFRCSLLQIRGSIPLLWEQIVDLSYKPQLRVINHEQTP QVVERHFHDLFQRYGETIALDLTDKHGDEGQLSAAYSAEMQKLPNVRYVSFDFHHVCG NSNFDNLHILYDQISQEFEKQGYFLIDTDGNILEEQKGIIRSNCIDCLDRTNVTQSYL AQKSLNIQLQRIGVFTSTECISMFAEDYGKFRTLWAEQGDEISLEYAGTHALKGDLVR FGKQTVAGLLKDGMSALSRYYLNNFHDGIRQDALDLVSGRYTVSRNNPSPFQLNSFES FSYLPVASALLIGGLTVTTFTIQQAGRNAQQYVSSVVWAGVAAGVMALVKANGRQFCS RPRLCGLL" CDS join(697744..697894,698202..698276,698402..698529, 698634..698725,698818..698875,699378..699437, 699649..699682,699870..699950,700038..700144, 700494..700580,700693..700770,701083..701147, 701560..701658,701764..701863,702036..702144, 702234..702306,702397..702490,702600..702686, 702809..702875,703073..703200) /locus_tag="TCM_021672" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:28176.m000267; paralog of Thecc1EG000073t3" /codon_start=1 /product="SAC domain-containing protein 8 isoform 3" /protein_id="EOY07167.1" /db_xref="TAIR:AT3G51830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q96328" /translation="MEIGSSSGNFKLYDRLELLEYQDKFVIKSVESPDQGFSICRREG NIEPLSDESSSGRPSKISTIYGVAGTIRLLAGIYVLVITSRKEVGSFLGYPVYRVESM KFLACNEALRYSNSQEKRDEAYFMTLLKTVEATPGLYYSYETDITLNLQRRCKLMEGW MSKSIWKQQADPRFVWNKHLLEELIEYKLDGFIIPLLQGSFQVAQLKLKNSPATFTLL SRRCTRRLGTRMWRRGANLEGDTANFIETEQLLELEGFRCSLLQIRGSIPLLWEQIVD LSYKPQLRVINHEQTPQVVERHFHDLFQRYGETIALDLTDKHGDEGQLSAAYSAEMQK LPNVRYVSFDFHHVCGNSNFDNLHILYDQISQEFEKQGYFLIDTDGNILEEQKGIIRS NCIDCLDRTNVTQSYLAQKSLNIQLQRIGVFTSTECISMFAEDYGKFRTLWAEQGDEI SLEYAGTHALKGDLVRFGKQTVAGLLKDGMSALSRYYLNNFHDGIRQDALDLVSGRYT VSRNNPSPFQLNSFESFSYLPVASALLIGGLTVTTFTIQQAGRNAQQYVSSVVWAGVA AGVMALVKANGRQFCSRPRLCGLL" CDS join(697744..697894,698202..698276,698402..698529, 698634..698725,698818..698875,699381..699437, 699649..699682,699870..699950,700038..700144, 700494..700580,700693..700770,701083..701147, 701560..701658,701764..701863,702036..702144, 702234..702306,702397..702490,702600..702686, 702809..702875,703073..703200) /locus_tag="TCM_021672" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28176.m000267; paralog of Thecc1EG000073t3" /codon_start=1 /product="SAC domain-containing protein 8 isoform 2" /protein_id="EOY07166.1" /db_xref="TAIR:AT3G51830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q96328" /translation="MEIGSSSGNFKLYDRLELLEYQDKFVIKSVESPDQGFSICRREG NIEPLSDESSSGRPSKISTIYGVAGTIRLLAGIYVLVITSRKEVGSFLGYPVYRVESM KFLACNEALRYSNSQEKRDEAYFMTLLKTVEATPGLYYSYETDITLNLQRRCKLMEGW MSKSIWKQADPRFVWNKHLLEELIEYKLDGFIIPLLQGSFQVAQLKLKNSPATFTLLS RRCTRRLGTRMWRRGANLEGDTANFIETEQLLELEGFRCSLLQIRGSIPLLWEQIVDL SYKPQLRVINHEQTPQVVERHFHDLFQRYGETIALDLTDKHGDEGQLSAAYSAEMQKL PNVRYVSFDFHHVCGNSNFDNLHILYDQISQEFEKQGYFLIDTDGNILEEQKGIIRSN CIDCLDRTNVTQSYLAQKSLNIQLQRIGVFTSTECISMFAEDYGKFRTLWAEQGDEIS LEYAGTHALKGDLVRFGKQTVAGLLKDGMSALSRYYLNNFHDGIRQDALDLVSGRYTV SRNNPSPFQLNSFESFSYLPVASALLIGGLTVTTFTIQQAGRNAQQYVSSVVWAGVAA GVMALVKANGRQFCSRPRLCGLL" gene 703808..705212 /locus_tag="TCM_021673" /note="dbxref CacaoGD:Thecc1EG021673" mRNA 703808..705212 /locus_tag="TCM_021673" /product="Response to aba and salt 1, putative" /inference="alignment:exonerate- protein:2:ricco:28176.m000269" /inference="similar to AA sequence:ricco:28176.m000269" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc208t16" CDS 704294..705001 /locus_tag="TCM_021673" /note="dbxref ricco:28176.m000269" /codon_start=1 /product="Response to aba and salt 1, putative" /protein_id="EOY07168.1" /db_xref="TAIR:AT1G58330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9R6R3" /translation="MTPGGSSTSTNHNAGSFDAFFQVWLERQEQYLDELLSVQQRSHE AREDDLKDLITRVLSHHQQYYEEKSRVAHRNIFLVFSPTWLSSFERASLWIAGFKPGF ALKLVSNSVQDLSQEQSERIKRLMAETRVEERVLNDELARVQESIAAPPLLEIARKRA RLMNAEIAGEQAALASLRKAVEEVVAAADLLRMTTAMRVVEILNPVQNVNFLTAATQL LVKLRNWGLQKDGERKE" gene complement(705373..710131) /locus_tag="TCM_021674" /note="dbxref CacaoGD:Thecc1EG021674" mRNA complement(join(705373..705626,705868..705960, 706056..706227,706313..706389,706578..706737, 707232..707341,707464..707523,707632..707705, 707845..707968,708067..708144,708308..708414, 708618..708722,708995..709129,709749..710131)) /locus_tag="TCM_021674" /product="Acyl-CoA oxidase 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01011175001" /inference="similar to AA sequence:Phytozome:GSVIVT01011175001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05517t00001" CDS complement(join(705495..705626,705868..705960, 706056..706227,706313..706389,706578..706737, 707232..707341,707464..707523,707632..707705, 707845..707968,708067..708144,708308..708414, 708618..708722,708995..709129,709749..709755)) /locus_tag="TCM_021674" /codon_start=1 /product="Acyl-CoA oxidase 4" /protein_id="EOY07169.1" /db_xref="Phytozome:GSVIVT01011175001" /db_xref="TAIR:AT3G51840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q96329" /translation="MLEAKQPKLACQLYLPPAADLSLSILSKNRKKKPLLSITMALLS KFRDETDKSAKSSYFNLPPLDVSVAFPQATPASTFPPPASDYYQFDDLLSPEEQAIRK KVRECMEKEVAPVMTEYWEKAEFPFQIVPKLAALRIAGGTIKGYGCPGLSITGSAIST AEVARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLKTIACWALTEPDYG SDASALKTTATKVKGGWMLEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDSPG LTATKIANKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPI GISMGVYDMCQRYLKERKQFGAPLAAFQINQQKLALMLGNVQAMTLVGWRLCKLYEGG KMTPGQASLGKSWITLKARETVSLGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYD INSLVTGREITGFASFKPAALSQRSRL" mobile_element 709772..713864 /note="source:CACAO_M_S_E51998_F88_scaffold_5 1 4093" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 714138..718273 /note="source:CACAO_M_S_E51998_F88_scaffold_5 4094 8229" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(718447..722381) /locus_tag="TCM_021675" /note="dbxref CacaoGD:Thecc1EG021675" mRNA complement(join(718447..718752,718840..718983, 719080..719148,719241..719384,719647..719803, 719914..720010,720220..720502,720603..720728, 720956..721027,721103..721221,721372..721457, 721633..721726,721806..721971,722051..722183, 722266..722381)) /locus_tag="TCM_021675" /product="Lysyl-tRNA synthetase 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400033312.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019889t3" /inference="similar to AA sequence:Phytozome:GSVIVT01019319001" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.23 coverage" CDS complement(join(718714..718752,718840..718983, 719080..719148,719241..719384,719647..719803, 719914..720010,720220..720502,720603..720728, 720956..721027,721103..721221,721372..721457, 721633..721726,721806..721971,722051..722183, 722266..722351)) /locus_tag="TCM_021675" /note="paralog of Thecc1EG019889t3" /codon_start=1 /product="Lysyl-tRNA synthetase 1" /protein_id="EOY07170.1" /db_xref="Phytozome:GSVIVT01019319001" /db_xref="TAIR:AT3G11710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I4L4" /translation="MDSCVSEPEPASSETLSKKYCSSCALLSVALKRERRARERQVRE EEKKRQVSTIRTSQNQRQQAADDDTIDPTQYLRNRIKSLALLKESGFNPYPHKFVVSM SITEFVAKFGSLSIGEHVESTEISLAGRIMNKRSSSSKLYFYDLQGNGAKIQVMTDAR HSNMDENEFSNYHSGVKRGDIVGISGFPGKSQRGELSIFPKSFAVLTPCLHMLPRHTV TSNCDEAQSKKKTTDHLWTPGMTRNPETYTLRDQETRYRQRYLDLMLNPEVQKVFRTR AKIISYYRNFLDNLGFIEVETPVMTMTAGGAAARPFITHHNELDMKLYMRISLELYLK KLVIGGLDRVYEIGKVFRNEGMDLTHLSEFTMCEFYMAYADYNDLMDLTEKLLSGMVK ELTGSYKIKYHGNGFDSEPIEIDFTPPFRRMDLIEELESRANLSIPKDLSSEPANWYL LEACERFDVKCPPPHTTTRLLDKLVGHFLEETCINPTFIINHPETMSPLAKWHRSKPG LTERFELFVNKRELCNAYTELNDPEVQRQRFAEQLKDRQSGDDEAMVLDESFCTALEY GLPPTAGLGMGIDRLAMLLTDSPNAKEVLLFPAMKPQD" gene 723516..731748 /locus_tag="TCM_021676" /note="dbxref CacaoGD:Thecc1EG021676" mRNA join(723516..724093,724234..724352,724610..724694, 725005..725058,725143..725234,725356..725459, 725697..725772,726180..726615,727137..727475, 727569..727775,727847..727945,728047..728119, 728195..728322,728457..728751,728847..729070, 729154..729278,729458..729572,729785..729840, 729946..730039,730118..730295,730375..730446, 730528..730780,731044..731748) /locus_tag="TCM_021676" /product="Transducin family protein / WD-40 repeat family protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s12520.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042486t1" /inference="similar to AA sequence:Phytozome:GSVIVT01011173001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:PASA:2:TSA:puevd3b020968t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g443t2" mRNA join(723516..724093,724234..724352,724610..724694, 725005..725058,725143..725234,725356..725459, 725697..725772,726180..726615,727137..727475, 727569..727775,727847..727945,728047..728119, 728195..728322,728457..728751,728847..729070, 729154..729278,729458..729572,729785..729840, 729946..730039,730118..730295,730375..730446, 730528..730628,730718..730780,731044..731748) /locus_tag="TCM_021676" /product="Transducin family protein / WD-40 repeat family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s12520.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042486t1" /inference="similar to AA sequence:Phytozome:GSVIVT01011173001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g443t2" mRNA join(723910..724093,724234..724352,724610..724694, 725005..725058,725143..725234,725356..725459, 725697..725772,726254..726615,727137..727475, 727569..727775,727847..727945,728047..728119, 728195..728322,728457..728751,728847..729070, 729154..729278,729458..729572,729785..729840, 729946..730039,730118..730295,730375..730446, 730528..730628,730718..730780,731044..731645) /locus_tag="TCM_021676" /product="Transducin family protein / WD-40 repeat family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s12520.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042486t1" /inference="similar to AA sequence:Phytozome:GSVIVT01011173001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g443t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g443t2" CDS join(724049..724093,724234..724352,724610..724694, 725005..725058,725143..725234,725356..725459, 725697..725772,726180..726615,727137..727475, 727569..727775,727847..727945,728047..728119, 728195..728322,728457..728751,728847..729070, 729154..729278,729458..729572,729785..729840, 729946..730039,730118..730295,730375..730446, 730528..730628,730718..730780,731044..731151) /locus_tag="TCM_021676" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042486t1" /codon_start=1 /product="Transducin family protein / WD-40 repeat family protein, putative isoform 1" /protein_id="EOY07171.1" /db_xref="Phytozome:GSVIVT01011173001" /db_xref="TAIR:AT5G05570.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IGA9" /translation="MFAKRLLQKAVHHSQHENLKSEDLDLRVAIHYGIPSTASLLTFD PIQRLLAIGTLDGRIKVIGGDGIEALFISPKQLPFKYLEFIQNQGFLISISNDNDIQV WNLESRCLACCLQWESNVTAFSFISGSQFMYIGDEYGLMSVIKYDAENGKLLQLPYYI SANSLSEAAGFSFPDDQPVVGILPQPHSSGNRVIIAYANGLIILWDVSEAQILFIGGG KDLQLKDAVESDVQDDTFEHHLQEKEISAICWASSDGTILAVGYIDGDILFWNTSSIA SSKGERNGQNKNVVKLQLSSAERRLPVIVLQWSSNNRSRNDCNGQLFIYGGDEIGSEE VLTVLSLEWSSGMETVRCVGRVDLTLTGSFADMILLPTAGATGGNHKADLFVLTNPGQ LHLYDDTILSTLLSEHERKQFSCPVEFPMVIPTADPSMTVAKFSVLPKGGNSPKGLSE LASMMKPGSTPTPAGGIKWPLTGGVPTQLSVAKDKSINQVYIAGYQDGSVRIWDASYP VLTLISVLEGEVQGTNVAGLSAPVTTLNFCWLTLSLAVGNECGVVRIYNLNGSSGKTS FHYVTETKCEVQSLPQGKGPQCIAVFSLLNSPVRAMQFVNCGAKLAVGFEFSHVAVLD VSSSSVLFVTDCVSSSSSPIISVSWLEFKNAHSLVKSSKHSETEAAVKSEEEIIFILT KDGKIISVDGGNGAMIRPHPWHLKKEETALSMYIIESSFSVSELNCEKQLEESSKDTT DKGEPRLNASSTGTEHLPSSETASSQEHSLDALLLLCCENSLRLYSMKSVIQGKDKTI LKVKHAKPCCWTTTFKKDGRVCGLVLLFQTGDMEIRSLPDLELVKESSIMSILRWNYK ANMDKMMTSDNAQVTLASGCEVAFVSLLNGENDFRVPESLPCLHDKVLAAAADAAFSF SSNQNKKQGAAPGILRGIAKGFKGGKVNTSPTPESDFSHLERKFLMSPFLDTAQNAIN TQEDVELDIDDIEIDEMPPVTSSSSHEVVKTKGEKETDREKLLGASDDTTPRLRTPQE IIAKYRKTGDASSAAAHARNKLVERQEKLERISRRTEELQSGAENFASLADELVKAME NRKWWQI" CDS join(724049..724093,724234..724352,724610..724694, 725005..725058,725143..725234,725356..725459, 725697..725772,726180..726615,727137..727475, 727569..727775,727847..727945,728047..728119, 728195..728322,728457..728751,728847..729070, 729154..729278,729458..729572,729785..729840, 729946..730039,730118..730295,730375..730446, 730528..730691) /locus_tag="TCM_021676" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG042486t1" /codon_start=1 /product="Transducin family protein / WD-40 repeat family protein, putative isoform 3" /protein_id="EOY07173.1" /db_xref="Phytozome:GSVIVT01011173001" /db_xref="TAIR:AT5G05570.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IGA9" /translation="MFAKRLLQKAVHHSQHENLKSEDLDLRVAIHYGIPSTASLLTFD PIQRLLAIGTLDGRIKVIGGDGIEALFISPKQLPFKYLEFIQNQGFLISISNDNDIQV WNLESRCLACCLQWESNVTAFSFISGSQFMYIGDEYGLMSVIKYDAENGKLLQLPYYI SANSLSEAAGFSFPDDQPVVGILPQPHSSGNRVIIAYANGLIILWDVSEAQILFIGGG KDLQLKDAVESDVQDDTFEHHLQEKEISAICWASSDGTILAVGYIDGDILFWNTSSIA SSKGERNGQNKNVVKLQLSSAERRLPVIVLQWSSNNRSRNDCNGQLFIYGGDEIGSEE VLTVLSLEWSSGMETVRCVGRVDLTLTGSFADMILLPTAGATGGNHKADLFVLTNPGQ LHLYDDTILSTLLSEHERKQFSCPVEFPMVIPTADPSMTVAKFSVLPKGGNSPKGLSE LASMMKPGSTPTPAGGIKWPLTGGVPTQLSVAKDKSINQVYIAGYQDGSVRIWDASYP VLTLISVLEGEVQGTNVAGLSAPVTTLNFCWLTLSLAVGNECGVVRIYNLNGSSGKTS FHYVTETKCEVQSLPQGKGPQCIAVFSLLNSPVRAMQFVNCGAKLAVGFEFSHVAVLD VSSSSVLFVTDCVSSSSSPIISVSWLEFKNAHSLVKSSKHSETEAAVKSEEEIIFILT KDGKIISVDGGNGAMIRPHPWHLKKEETALSMYIIESSFSVSELNCEKQLEESSKDTT DKGEPRLNASSTGTEHLPSSETASSQEHSLDALLLLCCENSLRLYSMKSVIQGKDKTI LKVKHAKPCCWTTTFKKDGRVCGLVLLFQTGDMEIRSLPDLELVKESSIMSILRWNYK ANMDKMMTSDNAQVTLASGCEVAFVSLLNGENDFRVPESLPCLHDKVLAAAADAAFSF SSNQNKKQGAAPGILRGIAKGFKGGKVNTSPTPESDFSHLERKFLMSPFLDTAQNAIN TQEDVELDIDDIEIDEMPPVTSSSSHEVVKTKGEKETDREKLLGASDDTTPRLRTPQE IIAKYRKTGVTVLDTFWFYQFIFFAVAAS" mRNA join(<725696..725772,726180..726615,727137..727475, 727569..727775,727847..727945,728047..728119, 728195..728322,728457..728751,728847..729070, 729154..729278,729458..729572,729785..730039, 730118..730295,730375..730446,730528..730628, 730718..730780,731044..731645) /locus_tag="TCM_021676" /product="Transducin family protein / WD-40 repeat family protein, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s12520.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042486t1" /inference="similar to AA sequence:Phytozome:GSVIVT01011173001" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1009t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g443t2" mRNA join(<725696..725772,726180..726615,727137..727475, 727569..727775,727847..727945,728047..728119, 728195..728322,728457..728751,728847..729070, 729154..729278,729458..729572,729785..729840, 729946..730295,730375..730446,730528..730628, 730718..730780,731044..731645) /locus_tag="TCM_021676" /product="Transducin family protein / WD-40 repeat family protein, putative isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s12520.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042486t1" /inference="similar to AA sequence:Phytozome:GSVIVT01011173001" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1009t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g443t2" CDS join(<725696..725772,726180..726615,727137..727475, 727569..727775,727847..727945,728047..728119, 728195..728322,728457..728751,728847..729070, 729154..729278,729458..729572,729785..730039, 730118..730295,730375..730446,730528..730628, 730718..730780,731044..731151) /locus_tag="TCM_021676" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG042486t1" /codon_start=1 /product="Transducin family protein / WD-40 repeat family protein, putative isoform 4" /protein_id="EOY07174.1" /db_xref="Phytozome:GSVIVT01011173001" /db_xref="TAIR:AT5G05570.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IGA9" /translation="EAAGFSFPDDQPVVGILPQPHSSGNRVIIAYANGLIILWDVSEA QILFIGGGKDLQLKDAVESDVQDDTFEHHLQEKEISAICWASSDGTILAVGYIDGDIL FWNTSSIASSKGERNGQNKNVVKLQLSSAERRLPVIVLQWSSNNRSRNDCNGQLFIYG GDEIGSEEVLTVLSLEWSSGMETVRCVGRVDLTLTGSFADMILLPTAGATGGNHKADL FVLTNPGQLHLYDDTILSTLLSEHERKQFSCPVEFPMVIPTADPSMTVAKFSVLPKGG NSPKGLSELASMMKPGSTPTPAGGIKWPLTGGVPTQLSVAKDKSINQVYIAGYQDGSV RIWDASYPVLTLISVLEGEVQGTNVAGLSAPVTTLNFCWLTLSLAVGNECGVVRIYNL NGSSGKTSFHYVTETKCEVQSLPQGKGPQCIAVFSLLNSPVRAMQFVNCGAKLAVGFE FSHVAVLDVSSSSVLFVTDCVSSSSSPIISVSWLEFKNAHSLVKSSKHSETEAAVKSE EEIIFILTKDGKIISVDGGNGAMIRPHPWHLKKEETALSMYIIESSFSVSELNCEKQL EESSKDTTDKGEPRLNASSTGTEHLPSSETASSQEHSLDALLLLCCENSLRLYSMKSV IQGKDKTILKVKHAKPCCWTTTFKKDGRVCGLVLLFQTGDMEIRSLPDLELVKESSIM SILRWNYKANMDKMMTSDNAQVTLASGCEVAFVSLLNGENDFRYYCHFFNLMHGESLK MSIKIINEEKESENLLCRSRVPESLPCLHDKVLAAAADAAFSFSSNQNKKQGAAPGIL RGIAKGFKGGKVNTSPTPESDFSHLERKFLMSPFLDTAQNAINTQEDVELDIDDIEID EMPPVTSSSSHEVVKTKGEKETDREKLLGASDDTTPRLRTPQEIIAKYRKTGDASSAA AHARNKLVERQEKLERISRRTEELQSGAENFASLADELVKAMENRKWWQI" CDS join(<725696..725772,726180..726615,727137..727475, 727569..727775,727847..727945,728047..728119, 728195..728322,728457..728751,728847..729070, 729154..729278,729458..729572,729785..729840, 729946..730295,730375..730446,730528..730628, 730718..730780,731044..731151) /locus_tag="TCM_021676" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG042486t1" /codon_start=1 /product="Transducin family protein / WD-40 repeat family protein, putative isoform 5" /protein_id="EOY07175.1" /db_xref="Phytozome:GSVIVT01011173001" /db_xref="TAIR:AT5G05570.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IGA9" /translation="EAAGFSFPDDQPVVGILPQPHSSGNRVIIAYANGLIILWDVSEA QILFIGGGKDLQLKDAVESDVQDDTFEHHLQEKEISAICWASSDGTILAVGYIDGDIL FWNTSSIASSKGERNGQNKNVVKLQLSSAERRLPVIVLQWSSNNRSRNDCNGQLFIYG GDEIGSEEVLTVLSLEWSSGMETVRCVGRVDLTLTGSFADMILLPTAGATGGNHKADL FVLTNPGQLHLYDDTILSTLLSEHERKQFSCPVEFPMVIPTADPSMTVAKFSVLPKGG NSPKGLSELASMMKPGSTPTPAGGIKWPLTGGVPTQLSVAKDKSINQVYIAGYQDGSV RIWDASYPVLTLISVLEGEVQGTNVAGLSAPVTTLNFCWLTLSLAVGNECGVVRIYNL NGSSGKTSFHYVTETKCEVQSLPQGKGPQCIAVFSLLNSPVRAMQFVNCGAKLAVGFE FSHVAVLDVSSSSVLFVTDCVSSSSSPIISVSWLEFKNAHSLVKSSKHSETEAAVKSE EEIIFILTKDGKIISVDGGNGAMIRPHPWHLKKEETALSMYIIESSFSVSELNCEKQL EESSKDTTDKGEPRLNASSTGTEHLPSSETASSQEHSLDALLLLCCENSLRLYSMKSV IQGKDKTILKVKHAKPCCWTTTFKKDGRVCGLVLLFQTGDMEIRSLPDLELVKESSIM SILRWNYKANMDKMMTSDNAQVTLASGCEVAFVSLLNGENDFRVPESLPCLHDKVLAA AADAAFSFSSNQNKKQVHGKISFLVFISEETNLLIQFIKLLQGAAPGILRGIAKGFKG GKVNTSPTPESDFSHLERKFLMSPFLDTAQNAINTQEDVELDIDDIEIDEMPPVTSSS SHEVVKTKGEKETDREKLLGASDDTTPRLRTPQEIIAKYRKTGDASSAAAHARNKLVE RQEKLERISRRTEELQSGAENFASLADELVKAMENRKWWQI" CDS join(725721..725772,726254..726615,727137..727475, 727569..727775,727847..727945,728047..728119, 728195..728322,728457..728751,728847..729070, 729154..729278,729458..729572,729785..729840, 729946..730039,730118..730295,730375..730446, 730528..730628,730718..730780,731044..731151) /locus_tag="TCM_021676" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042486t1" /codon_start=1 /product="Transducin family protein / WD-40 repeat family protein, putative isoform 2" /protein_id="EOY07172.1" /db_xref="Phytozome:GSVIVT01011173001" /db_xref="TAIR:AT5G05570.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IGA9" /translation="MTNLLLGFFLNPILLGIGGKDLQLKDAVESDVQDDTFEHHLQEK EISAICWASSDGTILAVGYIDGDILFWNTSSIASSKGERNGQNKNVVKLQLSSAERRL PVIVLQWSSNNRSRNDCNGQLFIYGGDEIGSEEVLTVLSLEWSSGMETVRCVGRVDLT LTGSFADMILLPTAGATGGNHKADLFVLTNPGQLHLYDDTILSTLLSEHERKQFSCPV EFPMVIPTADPSMTVAKFSVLPKGGNSPKGLSELASMMKPGSTPTPAGGIKWPLTGGV PTQLSVAKDKSINQVYIAGYQDGSVRIWDASYPVLTLISVLEGEVQGTNVAGLSAPVT TLNFCWLTLSLAVGNECGVVRIYNLNGSSGKTSFHYVTETKCEVQSLPQGKGPQCIAV FSLLNSPVRAMQFVNCGAKLAVGFEFSHVAVLDVSSSSVLFVTDCVSSSSSPIISVSW LEFKNAHSLVKSSKHSETEAAVKSEEEIIFILTKDGKIISVDGGNGAMIRPHPWHLKK EETALSMYIIESSFSVSELNCEKQLEESSKDTTDKGEPRLNASSTGTEHLPSSETASS QEHSLDALLLLCCENSLRLYSMKSVIQGKDKTILKVKHAKPCCWTTTFKKDGRVCGLV LLFQTGDMEIRSLPDLELVKESSIMSILRWNYKANMDKMMTSDNAQVTLASGCEVAFV SLLNGENDFRVPESLPCLHDKVLAAAADAAFSFSSNQNKKQGAAPGILRGIAKGFKGG KVNTSPTPESDFSHLERKFLMSPFLDTAQNAINTQEDVELDIDDIEIDEMPPVTSSSS HEVVKTKGEKETDREKLLGASDDTTPRLRTPQEIIAKYRKTGDASSAAAHARNKLVER QEKLERISRRTEELQSGAENFASLADELVKAMENRKWWQI" gene 732256..735875 /locus_tag="TCM_021677" /note="dbxref CacaoGD:Thecc1EG021677" mRNA join(732256..733448,733563..733652,733806..733872, 733982..734074,734151..734534,734674..734811, 734917..735351) /locus_tag="TCM_021677" /product="Omega-3 fatty acid desaturase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s10250.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042487t2" /inference="similar to AA sequence:Phytozome:POPTR_0006s10250.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:PASA:2:TSA:puevd3b020969t1a3; inference alignment:Newbler:10:TSA:cgbaP2_g01221t00002" mRNA join(732256..732743,732874..733448,733563..733652, 733806..733872,733982..734074,734151..734336, 734454..734534,734674..734811,734917..735320) /locus_tag="TCM_021677" /product="Fatty acid desaturase 8 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s10250.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042487t2" /inference="similar to AA sequence:Phytozome:POPTR_0006s10250.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01221t00002" mRNA join(732718..732743,732879..733448,733563..733652, 733806..733872,733982..734074,734151..734336, 734454..734534,734674..734811,734917..735875) /locus_tag="TCM_021677" /product="Fatty acid desaturase 8 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s10250.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042487t2" /inference="similar to AA sequence:Phytozome:POPTR_0006s10250.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc308t10; alternateUTRof:Thecc1EG021677t1; inference alignment:Newbler:10:TSA:cgbaP2_g01221t00002" CDS join(732916..733448,733563..733652,733806..733872, 733982..734074,734151..734336,734454..734534, 734674..734811,734917..735096) /locus_tag="TCM_021677" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042487t2" /codon_start=1 /product="Fatty acid desaturase 8 isoform 1" /protein_id="EOY07176.1" /db_xref="Phytozome:POPTR_0006s10250.1" /db_xref="TAIR:AT5G05580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P46310" /translation="MASFVISECGLKPLPHIYARPRAGVVSRNSSKPRFLHTSKNFSD LKTTNSIKFSTGVFEDRNWGLKVSAPLKVASIEEDEEREERIRYVNGFGEQEEESGFD PGAPPPFKLSDIRAAIPKHCWVKDPWKSMSYVVRDVAVVFGLAAAAAYLNNWLVWPLY WAAQGTMFWGLFVLGHDCGHGSFSNNPKLNSVVGHLLHSSILVPYHGWRISHRTHHQN HGHVENDESWHPLSEKIYRSLDNVTRILRFMLPFPMLAYPFYLWIRSPGKTGSHFDPN SDLFVPSERKDVITSTLCWTAMAAILVGLGFTMGPTQLLKLYGIPYWIFVMWLDGVTY LHHHGHEEKLPWYRGKEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYH LVDATEAAKPVLGKYYREPEKSGPLPFHLIGSLIRSLKKDHYVSDTGDVVYYQSDAEL KDPSK" CDS join(732916..733448,733563..733652,733806..733872, 733982..734074,734151..734336,734454..734534, 734674..734811,734917..735096) /locus_tag="TCM_021677" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042487t2" /codon_start=1 /product="Fatty acid desaturase 8 isoform 1" /protein_id="EOY07177.1" /db_xref="Phytozome:POPTR_0006s10250.1" /db_xref="TAIR:AT5G05580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P46310" /translation="MASFVISECGLKPLPHIYARPRAGVVSRNSSKPRFLHTSKNFSD LKTTNSIKFSTGVFEDRNWGLKVSAPLKVASIEEDEEREERIRYVNGFGEQEEESGFD PGAPPPFKLSDIRAAIPKHCWVKDPWKSMSYVVRDVAVVFGLAAAAAYLNNWLVWPLY WAAQGTMFWGLFVLGHDCGHGSFSNNPKLNSVVGHLLHSSILVPYHGWRISHRTHHQN HGHVENDESWHPLSEKIYRSLDNVTRILRFMLPFPMLAYPFYLWIRSPGKTGSHFDPN SDLFVPSERKDVITSTLCWTAMAAILVGLGFTMGPTQLLKLYGIPYWIFVMWLDGVTY LHHHGHEEKLPWYRGKEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYH LVDATEAAKPVLGKYYREPEKSGPLPFHLIGSLIRSLKKDHYVSDTGDVVYYQSDAEL KDPSK" CDS join(732916..733448,733563..733652,733806..733872, 733982..734074,734151..734453) /locus_tag="TCM_021677" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG042487t2" /codon_start=1 /product="Omega-3 fatty acid desaturase isoform 3" /protein_id="EOY07178.1" /db_xref="Phytozome:POPTR_0006s10250.1" /db_xref="TAIR:AT3G11170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P46310" /translation="MASFVISECGLKPLPHIYARPRAGVVSRNSSKPRFLHTSKNFSD LKTTNSIKFSTGVFEDRNWGLKVSAPLKVASIEEDEEREERIRYVNGFGEQEEESGFD PGAPPPFKLSDIRAAIPKHCWVKDPWKSMSYVVRDVAVVFGLAAAAAYLNNWLVWPLY WAAQGTMFWGLFVLGHDCGHGSFSNNPKLNSVVGHLLHSSILVPYHGWRISHRTHHQN HGHVENDESWHPLSEKIYRSLDNVTRILRFMLPFPMLAYPFYLWIRSPGKTGSHFDPN SDLFVPSERKDVITSTLCWTAMAAILVGLGFTMGPTQLLKLYGIPYWVAFVFLLVIYF LHCRNDASVGISSPVREFNLTRLCFVV" gene 736746..739884 /locus_tag="TCM_021678" /note="dbxref CacaoGD:Thecc1EG021678" mRNA join(736746..737888,737996..738318,738425..738518, 739411..739710,739819..739884) /locus_tag="TCM_021678" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s12480.1" /inference="similar to AA sequence:Phytozome:GSVIVT01011170001" /note="quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.97 coverage; weak similarity to ALC-interacting protein 1" CDS join(737036..737888,737996..738318,738425..738518, 739411..739637) /locus_tag="TCM_021678" /note="weak similarity to ALC-interacting protein 1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07179.1" /db_xref="Phytozome:GSVIVT01011170001" /db_xref="TAIR:AT5G01370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SY19" /translation="MSNTQSSSSGCFSAVVRRLLCSGSPQTHPSEDIKESTTNGFVGD EAKVQVKASESGPGIVARLMGLDSLPEKNWVQKGNNPGPVTRSRSVNFMDYMLEFDLA NAKHRRVKTSASFREVPQGPQLLQHNHNHDFLVVYLDSADKSNEAGLKPRKSEKGDGS SSKHDKQKENLREKVACKGENQEKNKKIAKLKNERRRVSGQHSLKAGSCISGAKDVQI NRGANSKAKRPLKMVNQKEASVLTRKKKSQRELKKVEYSENNSEGSSPVSVLNVDDFT AHQENGISESRSLELKSEKKWSSKSVKHDSPAMNFSARISITEGLGKQEYTKRNFEST GIEETEYYMELVGKPCKLTEEDIKFSNWIEPKTVFTFEDFEDICAEFGEQLLDLMMHQ GEISCERSPPTLITGPVVSASRLQQGSRVTWQDLDRNLRFLPPSEHRDQGCVFLLHCE HSGRIVVCMKVLRCNLGSCDIQKGGTISPSFYVQTGIDLLCQPPLSTA" gene 748326..749204 /locus_tag="TCM_021679" /note="dbxref CacaoGD:Thecc1EG021679" mRNA 748326..749204 /locus_tag="TCM_021679" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.90 coverage" CDS 748431..749015 /locus_tag="TCM_021679" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07180.1" /translation="MEIRTQPFSFFSSPDDLLIRCLLSDDLSTFIYIVENEGCKIDEE ITCGCRQIGSDRRTELKRTPLMLAAMSGSFNVLNYILQSGQVDVDKPSSSDGATALTC AYSAGSPPKIIQALISASKSFSSIPPTANNAKTGQNSSQDREEGSSEHGELNRRFPGQ GQEQNMATNTTKANTSRLTYYIARRLTGDFHGRS" mobile_element complement(751067..751276) /note="source:CACAO_M_E29_F88_scaffold_1 2726 2809" /mobile_element_type="retrotransposon:LTR/Copia" gene 751456..752568 /locus_tag="TCM_021680" /note="dbxref CacaoGD:Thecc1EG021680" mRNA join(751456..751537,752190..752568) /locus_tag="TCM_021680" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021681t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS 752219..752467 /locus_tag="TCM_021680" /note="paralog of Thecc1EG021681t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07181.1" /translation="MSNKNTGGYGAKLNVNLARLGTDSLKRYCKLYNIDNMGSDSSRE QMLNAVQQHFASQPLLHEQQVIPEFVDAIRTRPKDKKN" gene complement(754012..763001) /locus_tag="TCM_021681" /note="dbxref CacaoGD:Thecc1EG021681" mRNA complement(join(754012..754308,756152..756314, 757016..757080,757210..757713,757785..757877, 761149..761262,762478..763001)) /locus_tag="TCM_021681" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.32 coverage" CDS complement(join(754112..754308,756152..756314, 757016..757080,757210..757713,757785..757875)) /locus_tag="TCM_021681" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07182.1" /translation="MAERKCVLITKLKISNMNKEILNEEGANPVDMAERKCVLITKLR MSNKNKEILNEEGADSTGDSNKEGHGVKLNVNLVKLGTDSLRRYCKFYNIDNIDSDSS RNKCSMLSAVQQHFASQPPLDEQQVIPNFVDAARRLHKDGKPKDRVIHHAIAGLILLR QIYIYIIYGFWWLTDDLAAVGYLLLFYDVEISKDQNDAGITGVLDSEGYAVLPFVQAN VQVAKGDWRGYLHHRVLTIAAGLHLQPVDSRPFSFQLNQLWHSPFNKLLSSKALHGEK IKLKMSDKNKEIPANFHADLNVNLAKLWIDSYGRYCKLFKIDNIDSHSSREQVLDVVQ QHIVS" mobile_element 756976..757309 /note="source:scaffold_5_CACTA_0610 7714 8075" /mobile_element_type="transposon:TIR/CACTA" mobile_element 758005..758129 /note="source:CACAO_M_S_E87872_F28_scaffold_7 221 345" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 758461..758619 /note="source:scaffold_4_CACTA_0482 4468 4634" /mobile_element_type="transposon:TIR/CACTA" mobile_element 758491..759158 /note="source:CACAO_MITE_S117_scaffold_4 1 425" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(760044..760134) /note="source:CACAO_M_E427_F230_scaffold_1 1120 1182" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(764124..765766) /locus_tag="TCM_021682" /note="dbxref CacaoGD:Thecc1EG021682" mRNA complement(join(764124..765024,765196..765512, 765600..765766)) /locus_tag="TCM_021682" /product="Homeodomain-like superfamily protein" /inference="alignment:exonerate- protein:2:ricco:28308.m000066" /inference="similar to AA sequence:Phytozome:POPTR_0006s10240.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g429t1" CDS complement(join(764488..765024,765196..765459)) /locus_tag="TCM_021682" /codon_start=1 /product="Homeodomain-like superfamily protein" /protein_id="EOY07183.1" /db_xref="Phytozome:POPTR_0006s10240.1" /db_xref="TAIR:AT5G01380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IGA4" /translation="MEGRHHHPHPPQQQTMGVNVDVDRFPQWSIQETKEFLMIRAELD RSFMETKRNKMLWEVISTRMREKGYNRSAEQCKCKWKNLVTRYKGCETMEADAMRQQF PFYNELQAIFSSRMQSILWTDEGGVTGSKKKAVQLSSEEDEDMEESELDKGSGIRKKK KGKTGIGGGASGSSNNIKEILEDFMRQQMQMEMQWREAFEARENERRLKEMEWRQTMQ ALENERIMMDRRWREKEEQRRVREEARAEKRDALITALLNKLRREEHM" mobile_element 773479..774572 /note="source:scaffold_2_CACTA_0244 13498 14704" /mobile_element_type="transposon:TIR/CACTA" gene 775525..781379 /locus_tag="TCM_021684" /note="dbxref CacaoGD:Thecc1EG021684" mRNA join(775525..776433,777904..778047,778180..778413, 778623..778738,778825..778992,780006..780236, 780317..781379) /locus_tag="TCM_021684" /product="Calcium-dependent protein kinase 13 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s12460.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013784t1" /inference="similar to AA sequence:ricco:28308.m000065" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g480t2" mRNA join(775692..776433,777904..778047,778180..778332, 778623..778738,778825..778992,780006..780236, 780317..780946) /locus_tag="TCM_021684" /product="Calcium-dependent protein kinase 13 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s12460.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013784t1" /inference="similar to AA sequence:ricco:28308.m000065" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g480t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g480t2" CDS join(775812..776433,777904..778047,778180..778413, 778623..778738,778825..778992,780006..780236, 780317..780466) /locus_tag="TCM_021684" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28308.m000065; paralog of Thecc1EG013784t1" /codon_start=1 /product="Calcium-dependent protein kinase 13 isoform 1" /protein_id="EOY07184.1" /db_xref="TAIR:AT3G51850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SSF8" /translation="MGNCCRSPAAVAREDVKSNFSAHDHARKDSVSKQKPPITVLNGV PKENIEEKYLVDRELGRGEFGVTYLCIDRGTRELLACKSISKRKLRTAVDIEDVRREV AIMKHLPKNSSIVSLKEACEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVTRT IVEVVQLCHKHGVIHRDLKPENFLFANKKENSPLKAIDFGLSIFFKPGERFSEIVGSP YYMAPEVLKRNYGPEIDIWSAGVILYILLCGVPPFWAESEQGVAQAILRGLIDFKRDP WPNISESAKSLVRQMLEPDPKLRLTAKQVLGSKISSVLCLGELVYVSWEGAGWGLGVQ HPWLQNAKKAPNVPLGDVVKSRLKQFSMMNRFKRKALRVIAEFLSIEEVEDIKEMFKK MDTDNDGIVSIEELKAGFRNFGSHLAESEVQMLIEAVDANGKGTLDYGEFLAVSLHLQ RIANDEHLRKAFSYFDKDGNGYIEPDELRDSLMEDGADDCTNVANDIFQEVDTDKDGR ISYDEFTAMMKTGTDWRKASRHYSRGRFNSLSMKLMKDGSLNLGNE" CDS join(775812..776433,777904..778047,778180..778332, 778623..778738,778825..778992,780006..780236, 780317..780466) /locus_tag="TCM_021684" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28308.m000065; paralog of Thecc1EG013784t1" /codon_start=1 /product="Calcium-dependent protein kinase 13 isoform 2" /protein_id="EOY07185.1" /db_xref="TAIR:AT3G51850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SSF8" /translation="MGNCCRSPAAVAREDVKSNFSAHDHARKDSVSKQKPPITVLNGV PKENIEEKYLVDRELGRGEFGVTYLCIDRGTRELLACKSISKRKLRTAVDIEDVRREV AIMKHLPKNSSIVSLKEACEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVTRT IVEVVQLCHKHGVIHRDLKPENFLFANKKENSPLKAIDFGLSIFFKPGERFSEIVGSP YYMAPEVLKRNYGPEIDIWSAGVILYILLCGVPPFWAESEQGVAQAILRGLIDFKRDP WPNISESAKSLVRQMLEPDPKLRLTAKQVLEHPWLQNAKKAPNVPLGDVVKSRLKQFS MMNRFKRKALRVIAEFLSIEEVEDIKEMFKKMDTDNDGIVSIEELKAGFRNFGSHLAE SEVQMLIEAVDANGKGTLDYGEFLAVSLHLQRIANDEHLRKAFSYFDKDGNGYIEPDE LRDSLMEDGADDCTNVANDIFQEVDTDKDGRISYDEFTAMMKTGTDWRKASRHYSRGR FNSLSMKLMKDGSLNLGNE" gene 782156..786711 /locus_tag="TCM_021685" /note="dbxref CacaoGD:Thecc1EG021685" mRNA join(782156..782575,783441..783998,784519..784625, 786334..786711) /locus_tag="TCM_021685" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.16 coverage" CDS join(783826..783998,784519..784615) /locus_tag="TCM_021685" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07186.1" /translation="MGCVKDDYGRVWDFYSKSFVLVSDFPLQCKMFHSFACYKLPLQE YNKLNFESCAQYIWQHNEFGNWMLSGDDLLRNVCCNGDAYVDELD" mobile_element 784152..785835 /note="source:scaffold_10_CACTA_0130 7905 9607" /mobile_element_type="transposon:TIR/CACTA" mobile_element 786021..786335 /note="source:MITE_CACTA_25 1 315" /mobile_element_type="transposon:TIR/MITE" mobile_element 789696..790360 /note="source:INTACT345_F202_scaffold_1-int 1 694" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(790983..792593) /note="source:INTACT458_F219_scaffold_7-int 14984 16560" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 793030..793145 /note="source:INTACT446_F218_scaffold_9-int 7172 7286" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 793046..794968 /note="source:scaffold_5_CACTA_0615 198 2253" /mobile_element_type="transposon:TIR/CACTA" gene 797545..799937 /locus_tag="TCM_021686" /note="dbxref CacaoGD:Thecc1EG021686" mRNA join(797545..798289,799008..799338,799450..799937) /locus_tag="TCM_021686" /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s12440.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042490t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s12440.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g455t2" CDS join(797787..798289,799008..799338,799450..799698) /locus_tag="TCM_021686" /note="paralog of Thecc1EG042490t1" /codon_start=1 /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein" /protein_id="EOY07187.1" /db_xref="Phytozome:POPTR_0016s12440.1" /db_xref="TAIR:AT5G05600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FFF6" /translation="MNCLQSWPEPVVRVQSLSDSGIRAIPERYIKPLTDRPGLKTCSK IEEHVDIPVVDLQNLFGKDLALREETLRCISSTCRDWGFFQAVNHGVSHELMRRIREV WRRFFSLPLEVKQGYANEPSTYEGYGSRLGVEKGAILDWSDYFFLHFMPVSSRNQSKW PAQPSSCRELVAEYGAEVVKLCGRLLKAMSTNLGLPEDYLQKAFGGEDIGACLRVNFY PKCPQPDLTLGLSSHSDPGAMTILLPDHDVAGLQVCKNGKWITVKPVPNAFIVNVGDQ LQVLSNGIYKSVEHRVIVNSAKDRVSLAFFYNPKSDLLIEPAKELVSKDRPALYNPMT FDEYRLYIRTKGPCGKAQVESLKSNR" gene 801386..802442 /locus_tag="TCM_021687" /note="dbxref CacaoGD:Thecc1EG021687" mRNA join(801386..801666,802059..802442) /locus_tag="TCM_021687" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.59 coverage" CDS join(801663..801666,802059..802300) /locus_tag="TCM_021687" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07188.1" /translation="MEGRYNVTTRRQACVTHCLLSLKLLTVLSRHQLWTKISPFHACS FTQVSGHLSFKPNGQYATMAIGMAGGCAHVCCLFVSA" gene complement(802512..804433) /locus_tag="TCM_021688" /note="dbxref CacaoGD:Thecc1EG021688" mRNA complement(join(802512..803081,803621..803660, 803752..803828,803912..804152)) /locus_tag="TCM_021688" /product="Myb-like HTH transcriptional regulator family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s10190.1" /inference="similar to AA sequence:ricco:29701.m000580" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1773t2; inference alignment:Newbler:10:TSA:cgbaB_g00410t00001" mRNA complement(join(802703..803142,803259..803331, 803431..803488,803621..803660,803752..803828, 803912..804433)) /locus_tag="TCM_021688" /product="Myb-like HTH transcriptional regulator family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s10190.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s10190.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00410t00001" CDS complement(join(802768..803081,803621..803660, 803752..803828,803912..804020)) /locus_tag="TCM_021688" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29701.m000580" /codon_start=1 /product="Myb-like HTH transcriptional regulator family protein isoform 2" /protein_id="EOY07190.1" /db_xref="TAIR:AT2G01060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SQ15" /translation="MRRPSRSDGLAKERLRWTQELHDRFEDAVNQLGGPDRATPKGIL KAMGVDGLTIYHVKSHLQKYRILKFVPETNTSQHGNRATPTKATKPFSPTSLPSLCEE SESTAKDGFETDPEADRNEIESGERVQAMYAFESWDQYDHQDMVLNREERVSYLANDI SFPWNVPVCSSSPLVPSFL" CDS complement(join(802768..803142,803259..803331, 803431..803488,803621..803660,803752..803828, 803912..804020)) /locus_tag="TCM_021688" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Myb-like HTH transcriptional regulator family protein isoform 1" /protein_id="EOY07189.1" /db_xref="Phytozome:POPTR_0006s10190.1" /db_xref="TAIR:AT2G01060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HCX3" /translation="MRRPSRSDGLAKERLRWTQELHDRFEDAVNQLGGPDRATPKGIL KAMGVDGLTIYHVKSHLQKYRILKFVPETNTKCKFERRDISEILPNFGTTSGAQLNEA LQMHKEAERKQGDHQLEAQRNLKIKIEAQVIFLERLAGQHGNRATPTKATKPFSPTSL PSLCEESESTAKDGFETDPEADRNEIESGERVQAMYAFESWDQYDHQDMVLNREERVS YLANDISFPWNVPVCSSSPLVPSFL" mobile_element complement(804394..804958) /note="source:CACAO_M_S_E32470_F28_scaffold_3 5126 5703" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(805136..807585) /locus_tag="TCM_021689" /note="dbxref CacaoGD:Thecc1EG021689" mRNA complement(join(805136..805586,806186..806307, 806726..806947,807283..807315,807425..807585)) /locus_tag="TCM_021689" /product="Alfin-like 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g07750.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042491t2" /inference="similar to AA sequence:Phytozome:Glyma01g29950.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13022t3" CDS complement(join(805335..805586,806186..806307, 806726..806947,807283..807315,807425..807515)) /locus_tag="TCM_021689" /note="paralog of Thecc1EG042491t2" /codon_start=1 /product="Alfin-like 1" /protein_id="EOY07191.1" /db_xref="Phytozome:Glyma01g29950.1" /db_xref="TAIR:AT5G05610.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D9ZIL8" /translation="MEMASAARTVEEIFKDYSARRTAIVRALTYDVDEFYGLCDPEKE NLCLYGHPNESWEVTLPAEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLIS VAFYLGARLNRNERKRLYSMMNDLPTVFEVVTERKPVKDKPSMDSGSKSRGSTKRSIE GQAKSNPKVADEIFEEDEDEHSETLCGSCGGNYNADEFWIGCDVCERWFHGKCVKITP AKAESIKQYKCPSCSLKRGRQ" mobile_element 805988..806051 /note="source:CACAO_on_E230_scaffold_8 5290 5354" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(807870..812443) /locus_tag="TCM_021690" /note="dbxref CacaoGD:Thecc1EG021690" mRNA complement(join(807870..807962,808782..809412, 810907..811325,811397..811726,812208..812443)) /locus_tag="TCM_021690" /product="DnaJ subfamily B member 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29701.m000582" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029806t1" /inference="similar to AA sequence:ricco:29701.m000582" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09143t00001" mRNA complement(join(808877..809412,810914..811325, 811397..811832)) /locus_tag="TCM_021690" /product="DnaJ subfamily B member 1 isoform 3" /inference="alignment:exonerate- protein:2:ricco:29701.m000582" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029806t1" /inference="similar to AA sequence:ricco:29701.m000582" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc356t7_C1; inference alignment:Newbler:10:TSA:cgbaB_g09143t00001" CDS complement(join(808971..809412,810907..811325, 811397..811561)) /locus_tag="TCM_021690" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29701.m000582; paralog of Thecc1EG029806t1" /codon_start=1 /product="DnaJ subfamily B member 1 isoform 1" /protein_id="EOY07192.1" /db_xref="TAIR:AT3G08910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SR91" /translation="MGVDYYKILQVDRNAKDEDLKKAYRKLAMKWHPDKNPKNKKDAE AKFKQISEAYDVLSDPQKRAVYDQYGEEGLKGHMPPPGAGGFPGGADGGPTMFRFNTR SPDDIFSEIFGFSSPFGGMGDMGGSRAGASGFPRGMFGEDIFASLRGGAGEGSTTMPR KGPAIERTLPCSLEDLYKGTTKKMKISRDVSDGIGRPTTVEEILTIEIKPGWKKGTKI TFPEKGNEQRGVIPSDLVFIIDEKPHGVFKRDGNDLVVTQKISLVEALTGYTAQLTTL DGRNLTVPINNVISPTYEEVVKGEGMPIPKEPSKKGNLRIKFSIKFPTKLTTEQKTGL KRLMSSP" mRNA complement(join(<809097..809412,810907..811304, 811397..811832)) /locus_tag="TCM_021690" /product="DnaJ subfamily B member 1 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29701.m000582" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029806t1" /inference="similar to AA sequence:ricco:29701.m000582" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc276t4; inference alignment:Newbler:10:TSA:cgbaB_g09143t00001" CDS complement(join(<809097..809412,810907..811304, 811397..811561)) /locus_tag="TCM_021690" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29701.m000582; paralog of Thecc1EG029806t1" /codon_start=1 /product="DnaJ subfamily B member 1 isoform 2" /protein_id="EOY07193.1" /db_xref="TAIR:AT3G08910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SR91" /translation="MGVDYYKILQVDRNAKDEDLKKAYRKLAMKWHPDKNPKNKKDAE AKFKQISEAYDRAVYDQYGEEGLKGHMPPPGAGGFPGGADGGPTMFRFNTRSPDDIFS EIFGFSSPFGGMGDMGGSRAGASGFPRGMFGEDIFASLRGGAGEGSTTMPRKGPAIER TLPCSLEDLYKGTTKKMKISRDVSDGIGRPTTVEEILTIEIKPGWKKGTKITFPEKGN EQRGVIPSDLVFIIDEKPHGVFKRDGNDLVVTQKISLVEALTGYTAQLTTLDGRNLTV PINNVISPTYEEVVKGE" CDS complement(join(809210..809412,810914..811325, 811397..811561)) /locus_tag="TCM_021690" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29701.m000582; paralog of Thecc1EG029806t1" /codon_start=1 /product="DnaJ subfamily B member 1 isoform 3" /protein_id="EOY07194.1" /db_xref="TAIR:AT2G20560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SR91" /translation="MGVDYYKILQVDRNAKDEDLKKAYRKLAMKWHPDKNPKNKKDAE AKFKQISEAYDVLSDPQKRAVYDQYGEEGLKGHMPPPGAGGFPGGADGGPTMFRFNTR SPDDIFSEIFGFSSPFGGMGDMGGSRAGASGFPRGMFGEDIFASLRGGAGEGSTTMPR KGPAIERTLPCSLEDLYKGTTKKMKISRDVSDGDLLQWRKFLLLRLSQGGKKVQKSLF QRRETSNEGLFLLTLSSSLTRSLTVCSRGMAMILLLLRRYL" gene complement(812494..823711) /locus_tag="TCM_021691" /note="dbxref CacaoGD:Thecc1EG021691" mRNA complement(join(812494..813403,813545..813648, 813768..813851,813936..813980,814292..814363, 814454..814534,814652..814747,815061..815135, 816065..816112,816195..816278,816388..816495, 816591..816653,816769..816933,817799..817936, 818023..818070,818161..818406,818486..818602, 818984..819052,819186..819803,820160..820720, 820854..820982,821404..821578,821967..822135, 822248..822353,822428..822520,822830..822989, 823091..823711)) /locus_tag="TCM_021691" /product="HEAT repeat-containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g07790.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s12390.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc836t5" CDS complement(join(813256..813403,813545..813648, 813768..813851,813936..813980,814292..814363, 814454..814534,814652..814747,815061..815135, 816065..816112,816195..816278,816388..816495, 816591..816653,816769..816933,817799..817936, 818023..818070,818161..818406,818486..818602, 818984..819052,819186..819803,820160..820720, 820854..820982,821404..821578,821967..822135, 822248..822353,822428..822520,822830..822989, 823091..823305)) /locus_tag="TCM_021691" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="HEAT repeat-containing protein isoform 1" /protein_id="EOY07195.1" /db_xref="Phytozome:POPTR_0016s12390.1" /db_xref="TAIR:AT5G01400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IG98" /translation="MVGIMNPVSREKLASLFNSVKLAVDLASKLDLSHQLKQTLLEED AAALSEFLPRLFDLYSDPSGPVRKLATEIIGEIGVKNLDFVPEIAPFLITVLEDATPA VARQSIACSIDLFRLTLEKIAIQGLYSSELDSDLEASWSWMLKLKEKIYSIAFQPGSG GIRLVALKFVEAVILLYTPDPTGSPEAPPDEGTPVEFNATWLCGGHPLLNVGDLSIEA SQQLGLLLDQLRFPIVKSLTNSVIVVLINSLSGIAKKRPAYYGRILSVLLGLDSPSVV IKGVHVYGAHHALKNALLSCLKCTHPSAAPWRDRVLGALREMKAGGLAEPALNQVLKT NGSVEEGKDDSSVIKEEKPLVRARDAAGSNMGRKRSVTEDSSDLAENDDVSGKRVRST PSVSEESTKELNRNTTTSQGDICSTQPTINKGDVDTGPVQQLVAMFGALVAQGEKAVG SLGILISSISADLLAEVVMANMRNLPPDHPHTDGDDELLENMSIVGSDTQAKYPPSFL ADVVSLSSTFPPIASLLNSQLSVSNKIVIQKTEGEEEVDVVAGPNNAVAYAGMAHEAE HALLATDLPVSSDIVLPGKVKIDLPPPSDIHDVGYLESEIPGLDSSVRTDGLSDTQTA SSLVSTDLEDASQEQVTSFGGRSPLHVLPSISTDRSEELSPKAAVMDSNSLISSTATS VVSSYIALPKMSAPVVNLSDDQKDDLQKLAFIRIIEAYKQIALSGSLQVHFSLLAYLG VELPSELDLQKLLREHVLSDYINHQGHELTLRVLYRLFGEAEEESDFFSCTTAASAYE TFLLAVAETLRDSFPPSDKSLSKLLGEAPRLPKSVLNLLECLCSPGISEKAENESQSG DRVTQGLSTVWSLILLRPPIRDVCLKIALKSAVHHLEEVRMKAIRLVANKLYPLSSIA QQIEDFAREMLLSVVNGDGIERTDAEGSITEPQKESDSEKPSNEHQSMSSIGKDISAD VHQSETSQSVSSLSVPEAQQSMSLYFALCTKKHSLFRQIFVIYKSASKAVKQAIHRHI PILVRTMGSSSDLLEIISDPPSGSESLLMQVLHTLTDGTVPSAELMFTIKKLFDSKLK DVEILIPVLPFLPRDEVLLLFPHLVNLPLDKFQAALTRLLQGSSHSAPALSPAEVLIA IHGIDPERDGIPLKKVTDACNACFEQRQIFTQQVLAKVLNQLVEQIPLPLLFMRTVLQ AIGAFPALVDFIMEILSRLVSKQIWKYPKLWVGFLKCALLTKPQSFSVLLQLPPPQLE NALNRTAALKAPLVAHASQQNIRTSLPRSILAVLGLSLDSQNSSQAQTSQAHTGDTSN SDKDAVAVEKSKESSSAS" mRNA complement(join(813376..813403,813545..813851, 813936..813980,814292..814363,814454..814534, 814652..814747,815061..815135,816065..816112, 816195..816278,816388..816495,816591..816653, 816769..816933,817799..817936,818023..818070, 818161..818406,818486..818602,818984..819052, 819186..819797,820160..820720,820854..820982, 821404..821578,821967..822135,822248..822353, 822428..822520,822830..822989,823091..823639)) /locus_tag="TCM_021691" /product="HEAT repeat-containing protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g07790.1" /inference="similar to AA sequence:Phytozome:GSVIVT01011157001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc836t3; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc836t5" mRNA complement(join(813376..813403,813545..813648, 813768..813851,813936..813980,814292..814363, 814454..814534,814652..814747,815061..815148, 816065..816112,816195..816278,816388..816495, 816591..816653,816769..816933,817799..817936, 818023..818070,818161..818406,818486..818602, 818984..819052,819186..819797,820160..820720, 820854..820982,821404..821578,821967..822135, 822248..822353,822428..822520,822830..822989, 823091..823639)) /locus_tag="TCM_021691" /product="HEAT repeat-containing protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g07790.1" /inference="similar to AA sequence:Phytozome:GSVIVT01011157001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc836t2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc836t5" mRNA complement(join(<813380..813403,813545..813648, 813768..813851,813936..813980,814292..814363, 814454..814534,814652..814747,815061..815135, 816065..816112,816195..816278,816388..816495, 816591..816653,816769..816933,817799..817936, 818023..818070,818161..818406,818486..818602, 818984..819052,819186..819797,820160..820720, 820854..820982,821404..821578,821967..822135, 822248..822353,822428..822520,822830..822989, 823091..823639)) /locus_tag="TCM_021691" /product="HEAT repeat-containing protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g07790.1" /inference="similar to AA sequence:ricco:29701.m000585" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc765t14; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc836t5" CDS complement(join(<813382..813403,813545..813648, 813768..813851,813936..813980,814292..814363, 814454..814534,814652..814747,815061..815135, 816065..816112,816195..816278,816388..816495, 816591..816653,816769..816933,817799..817936, 818023..818070,818161..818406,818486..818602, 818984..819052,819186..819797,820160..820720, 820854..820982,821404..821578,821967..822135, 822248..822353,822428..822520,822830..822989, 823091..823305)) /locus_tag="TCM_021691" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29701.m000585" /codon_start=1 /product="HEAT repeat-containing protein isoform 3" /protein_id="EOY07197.1" /db_xref="TAIR:AT5G01400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IG98" /translation="MVGIMNPVSREKLASLFNSVKLAVDLASKLDLSHQLKQTLLEED AAALSEFLPRLFDLYSDPSGPVRKLATEIIGEIGVKNLDFVPEIAPFLITVLEDATPA VARQSIACSIDLFRLTLEKIAIQGLYSSELDSDLEASWSWMLKLKEKIYSIAFQPGSG GIRLVALKFVEAVILLYTPDPTGSPEAPPDEGTPVEFNATWLCGGHPLLNVGDLSIEA SQQLGLLLDQLRFPIVKSLTNSVIVVLINSLSGIAKKRPAYYGRILSVLLGLDSPSVV IKGVHVYGAHHALKNALLSCLKCTHPSAAPWRDRVLGALREMKAGGLAEPALNQVLKT NGSVEEGKDDSSVIKEEKPLVRARDAAGSNMGRKRSVTEDSSDLAENDDVSGKRVRST PSVSEESTKELNRNTTTSQGDICSTQPTINKGDVDTGPVQQLVAMFGALVAQGEKAVG SLGILISSISADLLAEVVMANMRNLPPDHPHTDGDDELLENMSIVGSDTQAKYPPSFL ADVVSLSSTFPPIASLLNSQLSVSNKIVKTEGEEEVDVVAGPNNAVAYAGMAHEAEHA LLATDLPVSSDIVLPGKVKIDLPPPSDIHDVGYLESEIPGLDSSVRTDGLSDTQTASS LVSTDLEDASQEQVTSFGGRSPLHVLPSISTDRSEELSPKAAVMDSNSLISSTATSVV SSYIALPKMSAPVVNLSDDQKDDLQKLAFIRIIEAYKQIALSGSLQVHFSLLAYLGVE LPSELDLQKLLREHVLSDYINHQGHELTLRVLYRLFGEAEEESDFFSCTTAASAYETF LLAVAETLRDSFPPSDKSLSKLLGEAPRLPKSVLNLLECLCSPGISEKAENESQSGDR VTQGLSTVWSLILLRPPIRDVCLKIALKSAVHHLEEVRMKAIRLVANKLYPLSSIAQQ IEDFAREMLLSVVNGDGIERTDAEGSITEPQKESDSEKPSNEHQSMSSIGKDISADVH QSETSQSVSSLSVPEAQQSMSLYFALCTKKHSLFRQIFVIYKSASKAVKQAIHRHIPI LVRTMGSSSDLLEIISDPPSGSESLLMQVLHTLTDGTVPSAELMFTIKKLFDSKLKDV EILIPVLPFLPRDEVLLLFPHLVNLPLDKFQAALTRLLQGSSHSAPALSPAEVLIAIH GIDPERDGIPLKKVTDACNACFEQRQIFTQQVLAKVLNQLVEQIPLPLLFMRTVLQAI GAFPALVDFIMEILSRLVSKQIWKYPKLWVGFLKCALLTKPQSFSVLLQLPPPQLENA LNRTAALKAPLVAHASQQNIRTSLPRSILAVLG" CDS complement(join(813726..813851,813936..813980, 814292..814363,814454..814534,814652..814747, 815061..815135,816065..816112,816195..816278, 816388..816495,816591..816653,816769..816933, 817799..817936,818023..818070,818161..818406, 818486..818602,818984..819052,819186..819797, 820160..820720,820854..820982,821404..821578, 821967..822135,822248..822353,822428..822520, 822830..822989,823091..823305)) /locus_tag="TCM_021691" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="HEAT repeat-containing protein isoform 4" /protein_id="EOY07198.1" /db_xref="Phytozome:GSVIVT01011157001" /db_xref="TAIR:AT5G01400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IG98" /translation="MVGIMNPVSREKLASLFNSVKLAVDLASKLDLSHQLKQTLLEED AAALSEFLPRLFDLYSDPSGPVRKLATEIIGEIGVKNLDFVPEIAPFLITVLEDATPA VARQSIACSIDLFRLTLEKIAIQGLYSSELDSDLEASWSWMLKLKEKIYSIAFQPGSG GIRLVALKFVEAVILLYTPDPTGSPEAPPDEGTPVEFNATWLCGGHPLLNVGDLSIEA SQQLGLLLDQLRFPIVKSLTNSVIVVLINSLSGIAKKRPAYYGRILSVLLGLDSPSVV IKGVHVYGAHHALKNALLSCLKCTHPSAAPWRDRVLGALREMKAGGLAEPALNQVLKT NGSVEEGKDDSSVIKEEKPLVRARDAAGSNMGRKRSVTEDSSDLAENDDVSGKRVRST PSVSEESTKELNRNTTTSQGDICSTQPTINKGDVDTGPVQQLVAMFGALVAQGEKAVG SLGILISSISADLLAEVVMANMRNLPPDHPHTDGDDELLENMSIVGSDTQAKYPPSFL ADVVSLSSTFPPIASLLNSQLSVSNKIVKTEGEEEVDVVAGPNNAVAYAGMAHEAEHA LLATDLPVSSDIVLPGKVKIDLPPPSDIHDVGYLESEIPGLDSSVRTDGLSDTQTASS LVSTDLEDASQEQVTSFGGRSPLHVLPSISTDRSEELSPKAAVMDSNSLISSTATSVV SSYIALPKMSAPVVNLSDDQKDDLQKLAFIRIIEAYKQIALSGSLQVHFSLLAYLGVE LPSELDLQKLLREHVLSDYINHQGHELTLRVLYRLFGEAEEESDFFSCTTAASAYETF LLAVAETLRDSFPPSDKSLSKLLGEAPRLPKSVLNLLECLCSPGISEKAENESQSGDR VTQGLSTVWSLILLRPPIRDVCLKIALKSAVHHLEEVRMKAIRLVANKLYPLSSIAQQ IEDFAREMLLSVVNGDGIERTDAEGSITEPQKESDSEKPSNEHQSMSSIGKDISADVH QSETSQSVSSLSVPEAQQSMSLYFALCTKKHSLFRQIFVIYKSASKAVKQAIHRHIPI LVRTMGSSSDLLEIISDPPSGSESLLMQVLHTLTDGTVPSAELMFTIKKLFDSKLKDV EILIPVLPFLPRDEVLLLFPHLVNLPLDKFQAALTRLLQGSSHSAPALSPAEVLIAIH GIDPERDGIPLKKVTDACNACFEQRQIFTQQVLAKVLNQLVEQIPLPLLFMRTVLQAI GAFPALVDFIMEILSRLVSKQIWKYPKLWVGFLKCALLTKPQSFSVLLQVHVSFINYF KMHF" CDS complement(join(815092..815148,816065..816112, 816195..816278,816388..816495,816591..816653, 816769..816933,817799..817936,818023..818070, 818161..818406,818486..818602,818984..819052, 819186..819797,820160..820720,820854..820982, 821404..821578,821967..822135,822248..822353, 822428..822520,822830..822989,823091..823305)) /locus_tag="TCM_021691" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="HEAT repeat-containing protein isoform 2" /protein_id="EOY07196.1" /db_xref="Phytozome:GSVIVT01011157001" /db_xref="TAIR:AT5G01400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IG98" /translation="MVGIMNPVSREKLASLFNSVKLAVDLASKLDLSHQLKQTLLEED AAALSEFLPRLFDLYSDPSGPVRKLATEIIGEIGVKNLDFVPEIAPFLITVLEDATPA VARQSIACSIDLFRLTLEKIAIQGLYSSELDSDLEASWSWMLKLKEKIYSIAFQPGSG GIRLVALKFVEAVILLYTPDPTGSPEAPPDEGTPVEFNATWLCGGHPLLNVGDLSIEA SQQLGLLLDQLRFPIVKSLTNSVIVVLINSLSGIAKKRPAYYGRILSVLLGLDSPSVV IKGVHVYGAHHALKNALLSCLKCTHPSAAPWRDRVLGALREMKAGGLAEPALNQVLKT NGSVEEGKDDSSVIKEEKPLVRARDAAGSNMGRKRSVTEDSSDLAENDDVSGKRVRST PSVSEESTKELNRNTTTSQGDICSTQPTINKGDVDTGPVQQLVAMFGALVAQGEKAVG SLGILISSISADLLAEVVMANMRNLPPDHPHTDGDDELLENMSIVGSDTQAKYPPSFL ADVVSLSSTFPPIASLLNSQLSVSNKIVKTEGEEEVDVVAGPNNAVAYAGMAHEAEHA LLATDLPVSSDIVLPGKVKIDLPPPSDIHDVGYLESEIPGLDSSVRTDGLSDTQTASS LVSTDLEDASQEQVTSFGGRSPLHVLPSISTDRSEELSPKAAVMDSNSLISSTATSVV SSYIALPKMSAPVVNLSDDQKDDLQKLAFIRIIEAYKQIALSGSLQVHFSLLAYLGVE LPSELDLQKLLREHVLSDYINHQGHELTLRVLYRLFGEAEEESDFFSCTTAASAYETF LLAVAETLRDSFPPSDKSLSKLLGEAPRLPKSVLNLLECLCSPGISEKAENESQSGDR VTQGLSTVWSLILLRPPIRDVCLKIALKSAVHHLEEVRMKAIRLVANKLYPLSSIAQQ IEDFAREMLLSVVNGDGIERTDAEGSITEPQKESDSEKPSNEHQSMSSIGKDISADVH QSETSQSVSSLSVPEAQQSMSLYFALCTKKHSLFRQIFVIYKSASKAVKQAIHRHIPI LVRTMGSSSDLLEIISDPPSGSESLLMQVLHTLTDGTVPSAELMFTIKKLFDSKLKDV EILIPVLPFLPRDEFVFLGFAALSTSCKSSAG" mRNA complement(join(815853..816112,816195..816278, 816388..816495,816591..816653,816769..816933, 817799..817936,818023..818070,818161..818406, 818486..818602,818984..819052,819186..819797, 820160..820720,820854..820982,821404..821578, 821967..822135,822248..822353,822428..822520, 822830..822989,823091..823639)) /locus_tag="TCM_021691" /product="HEAT repeat-containing protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g07790.1" /inference="similar to AA sequence:Phytozome:GSVIVT01011157001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc765t8; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc836t5" CDS complement(join(815993..816112,816195..816278, 816388..816495,816591..816653,816769..816933, 817799..817936,818023..818070,818161..818406, 818486..818602,818984..819052,819186..819797, 820160..820720,820854..820982,821404..821578, 821967..822135,822248..822353,822428..822520, 822830..822989,823091..823305)) /locus_tag="TCM_021691" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="HEAT repeat-containing protein isoform 5" /protein_id="EOY07199.1" /db_xref="Phytozome:GSVIVT01011157001" /db_xref="TAIR:AT5G01400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IG98" /translation="MVGIMNPVSREKLASLFNSVKLAVDLASKLDLSHQLKQTLLEED AAALSEFLPRLFDLYSDPSGPVRKLATEIIGEIGVKNLDFVPEIAPFLITVLEDATPA VARQSIACSIDLFRLTLEKIAIQGLYSSELDSDLEASWSWMLKLKEKIYSIAFQPGSG GIRLVALKFVEAVILLYTPDPTGSPEAPPDEGTPVEFNATWLCGGHPLLNVGDLSIEA SQQLGLLLDQLRFPIVKSLTNSVIVVLINSLSGIAKKRPAYYGRILSVLLGLDSPSVV IKGVHVYGAHHALKNALLSCLKCTHPSAAPWRDRVLGALREMKAGGLAEPALNQVLKT NGSVEEGKDDSSVIKEEKPLVRARDAAGSNMGRKRSVTEDSSDLAENDDVSGKRVRST PSVSEESTKELNRNTTTSQGDICSTQPTINKGDVDTGPVQQLVAMFGALVAQGEKAVG SLGILISSISADLLAEVVMANMRNLPPDHPHTDGDDELLENMSIVGSDTQAKYPPSFL ADVVSLSSTFPPIASLLNSQLSVSNKIVKTEGEEEVDVVAGPNNAVAYAGMAHEAEHA LLATDLPVSSDIVLPGKVKIDLPPPSDIHDVGYLESEIPGLDSSVRTDGLSDTQTASS LVSTDLEDASQEQVTSFGGRSPLHVLPSISTDRSEELSPKAAVMDSNSLISSTATSVV SSYIALPKMSAPVVNLSDDQKDDLQKLAFIRIIEAYKQIALSGSLQVHFSLLAYLGVE LPSELDLQKLLREHVLSDYINHQGHELTLRVLYRLFGEAEEESDFFSCTTAASAYETF LLAVAETLRDSFPPSDKSLSKLLGEAPRLPKSVLNLLECLCSPGISEKAENESQSGDR VTQGLSTVWSLILLRPPIRDVCLKIALKSAVHHLEEVRMKAIRLVANKLYPLSSIAQQ IEDFAREMLLSVVNGDGIERTDAEGSITEPQKESDSEKPSNEHQSMSSIGKDISADVH QSETSQSVSSLSVPEAQQSMSLYFALCTKKHSLFRQIFVIYKSASKAVKQAIHRHIPI LVRTMGSSSDLLEIISDPPSGSESLLMQVLHTLTDGTVPSAELMFTIKKLFDSKLKDV EILIPVLPFLPRDEVFLHSLIISFLIVYEHGCFAEEC" mobile_element 824005..824073 /note="source:CACAO_PIF_E119_scaffold_3 2162 2230" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 824166..825390 /locus_tag="TCM_021692" /note="dbxref CacaoGD:Thecc1EG021692" mRNA join(824166..824860,824940..825390) /locus_tag="TCM_021692" /product="Rhodanese/Cell cycle control phosphatase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01011156001" /inference="similar to AA sequence:Phytozome:GSVIVT01011156001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g09720t00001" CDS join(824406..824860,824940..825138) /locus_tag="TCM_021692" /codon_start=1 /product="Rhodanese/Cell cycle control phosphatase superfamily protein" /protein_id="EOY07200.1" /db_xref="Phytozome:GSVIVT01011156001" /db_xref="TAIR:AT3G08920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HCW9" /translation="MAIQLNHFRASTLKQEKQPQPPFFTSSKTRTFRVAAASSNALQL IQSGEVKPIPPKDAATAMNSEGFRLLDIRPEWEREKAHVKGSVHVPLFVKDMDNSPIT LLKKWVHFGYIGLWTGQNFTMINPNFIREVEAAVPDKDAKLLVACGEGLRSMMATSKL YEGGYKNLGWLAGGFNRAADGDFPEVEGPEKLQYATLGGASYYFFQLLLLLQAVGKE" gene complement(825681..827894) /locus_tag="TCM_021693" /note="dbxref CacaoGD:Thecc1EG021693" mRNA complement(join(825681..826050,826825..827894)) /locus_tag="TCM_021693" /product="Aldolase-type TIM barrel family protein" /inference="alignment:exonerate-protein:2:frave:gene18342" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028738t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s12370.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13028t1" CDS complement(826855..827784) /locus_tag="TCM_021693" /note="paralog of Thecc1EG028738t1" /codon_start=1 /product="Aldolase-type TIM barrel family protein" /protein_id="EOY07201.1" /db_xref="Phytozome:POPTR_0016s12370.1" /db_xref="TAIR:AT5G01410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L940" /translation="MAGTGVVAVYGNGAITETHKSPFSVKVGLAQMLRGGVIMDVVTP EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKEIKQAVTIPVMAKARIGH FVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAA MIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFSFAKKIQSPYDLVMQTKQL GRLPVVHFAAGGVATPADAALMMQLGCDGVFVGSGVFKSGDPARRARAIVQAVTHYSD PDVLAEVSCGLGEAMVGLNLNDKKVERFAARSE" gene complement(828482..833401) /locus_tag="TCM_021694" /note="dbxref CacaoGD:Thecc1EG021694" mRNA complement(join(828482..829064,829387..829466, 829780..829831,830006..830357,830446..830518, 830758..830904,831643..831725,831803..831877, 832015..832108,832198..832323,832433..832539, 832651..833401)) /locus_tag="TCM_021694" /product="RING/U-box superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s10120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041620t1" /inference="similar to AA sequence:ricco:29701.m000588" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g491t2" mRNA complement(join(828660..829064,829387..829831, 830006..830357,830446..830523,830754..830904, 831643..831725,831803..831877,832015..832108, 832198..832323,832433..832539,832651..833272)) /locus_tag="TCM_021694" /product="RING/U-box superfamily protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s10120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041620t1" /inference="similar to AA sequence:ricco:29701.m000588" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc636t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g491t2" CDS complement(join(828917..829064,829387..829466, 829780..829831,830006..830357,830446..830518, 830758..830904,831643..831725,831803..831877, 832015..832108,832198..832323,832433..832539, 832651..832984)) /locus_tag="TCM_021694" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29701.m000588; paralog of Thecc1EG041620t1" /codon_start=1 /product="RING/U-box superfamily protein, putative isoform 1" /protein_id="EOY07202.1" /db_xref="TAIR:AT2G38185.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IG95" /translation="MAEPNRSSPSASASASASSSSSSSSYREDSGGAAGAAASSSGTS SQVREEEEGQDHEYRQHLQHFHNPELENQHIDLVSYRGNLSGFDDSSTVIGDDTWSCI IVVLTFWFFVSMTLILGVYGAVNIRVGPNCSLLLQPNPIFVQSVKVEEVDDTKPGLKL YGFYKSPSLDVVTTWSETRTATVQADSHKEWIHYLNRGSQVNISYNVNSAGSSVFLII AQGSEGLSQWLEDPTYPNTTLSWNIVRGSGMIQQDIYRSSSYYIALGNLNSEDVEVEL NITVRAFIYNTTEAYYRCTFGNGLCSLSVLFPQGNSVVLTSPGLEQSTSADDWSVRLS YGPRWIIYIVGIGGMTAIMLVAFNFLNKFQFTRGGETNLHYGENASARAPLLSNKDDD ISSWGSSYDSVSSDEADLEDFLAAGSVEGTSIREGENSNNTRRLCAICFDAPRDCFFL PCGHCVACFACGSRIAEAAGTCPICRRNMKKAQQLQTEILYLPVLHSLVSFSLLNSIK REKEDLLLFLFSTRKWTGGKRVKAIVDRSCSRQVREAFLFLSLFPPTF" mRNA complement(join(829312..829831,830006..830345, 830446..830518,830758..830904,831643..831725, 831803..831877,832015..832108,832198..832323, 832433..832539,832651..833344)) /locus_tag="TCM_021694" /product="RING/U-box superfamily protein, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s10120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041620t1" /inference="similar to AA sequence:ricco:29701.m000588" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc631t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g491t2" mRNA complement(join(829312..829831,830006..830357, 830446..830518,830758..830904,831643..831725, 831803..831877,832015..832108,832198..832323, 832433..832539,832651..833344)) /locus_tag="TCM_021694" /product="RING/U-box superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s10120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041620t1" /inference="similar to AA sequence:ricco:29701.m000588" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc631t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g491t2" mRNA complement(join(829312..830357,830446..830518, 830758..830904,831643..831725,831803..831877, 832015..832108,832198..832323,832433..832539, 832651..833344)) /locus_tag="TCM_021694" /product="RING/U-box superfamily protein, putative isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s10120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041620t1" /inference="similar to AA sequence:ricco:29701.m000588" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc631t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g491t2" CDS complement(join(829756..829831,830006..830345, 830446..830518,830758..830904,831643..831725, 831803..831877,832015..832108,832198..832323, 832433..832539,832651..832984)) /locus_tag="TCM_021694" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29701.m000588; paralog of Thecc1EG041620t1" /codon_start=1 /product="RING/U-box superfamily protein, putative isoform 4" /protein_id="EOY07205.1" /db_xref="TAIR:AT2G38185.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IG95" /translation="MAEPNRSSPSASASASASSSSSSSSYREDSGGAAGAAASSSGTS SQVREEEEGQDHEYRQHLQHFHNPELENQHIDLVSYRGNLSGFDDSSTVIGDDTWSCI IVVLTFWFFVSMTLILGVYGAVNIRVGPNCSLLLQPNPIFVQSVKVEEVDDTKPGLKL YGFYKSPSLDVVTTWSETRTATVQADSHKEWIHYLNRGSQVNISYNVNSAGSSVFLII AQGSEGLSQWLEDPTYPNTTLSWNIVRGSGMIQQDIYRSSSYYIALGNLNSEDVEVEL NITVRAFIYNTTEAYYRCTFGNGLCSLSVLFPQGNSVVLTSPGLEQSTSADDWSVRLS YGPRWIIYIVGIAIMLVAFNFLNKFQFTRGGETNLHYGENASARAPLLSNKDDDISSW GSSYDSVSSDEADLEDFLAAGSVEGTSIREGENSNNTRRLCAICFDAPRDCFFLPCGH CVACFACGSRIAEAAGTCPICRRNMKKVRKIFTV" CDS complement(join(829756..829831,830006..830357, 830446..830518,830758..830904,831643..831725, 831803..831877,832015..832108,832198..832323, 832433..832539,832651..832984)) /locus_tag="TCM_021694" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29701.m000588; paralog of Thecc1EG041620t1" /codon_start=1 /product="RING/U-box superfamily protein, putative isoform 2" /protein_id="EOY07203.1" /db_xref="TAIR:AT2G38185.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IG95" /translation="MAEPNRSSPSASASASASSSSSSSSYREDSGGAAGAAASSSGTS SQVREEEEGQDHEYRQHLQHFHNPELENQHIDLVSYRGNLSGFDDSSTVIGDDTWSCI IVVLTFWFFVSMTLILGVYGAVNIRVGPNCSLLLQPNPIFVQSVKVEEVDDTKPGLKL YGFYKSPSLDVVTTWSETRTATVQADSHKEWIHYLNRGSQVNISYNVNSAGSSVFLII AQGSEGLSQWLEDPTYPNTTLSWNIVRGSGMIQQDIYRSSSYYIALGNLNSEDVEVEL NITVRAFIYNTTEAYYRCTFGNGLCSLSVLFPQGNSVVLTSPGLEQSTSADDWSVRLS YGPRWIIYIVGIGGMTAIMLVAFNFLNKFQFTRGGETNLHYGENASARAPLLSNKDDD ISSWGSSYDSVSSDEADLEDFLAAGSVEGTSIREGENSNNTRRLCAICFDAPRDCFFL PCGHCVACFACGSRIAEAAGTCPICRRNMKKVRKIFTV" CDS complement(join(829756..829831,830006..830357, 830446..830523,830754..830904,831643..831725, 831803..831877,832015..832108,832198..832323, 832433..832539,832651..832984)) /locus_tag="TCM_021694" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29701.m000588; paralog of Thecc1EG041620t1" /codon_start=1 /product="RING/U-box superfamily protein, putative isoform 3" /protein_id="EOY07204.1" /db_xref="TAIR:AT2G38185.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IG95" /translation="MAEPNRSSPSASASASASSSSSSSSYREDSGGAAGAAASSSGTS SQVREEEEGQDHEYRQHLQHFHNPELENQHIDLVSYRGNLSGFDDSSTVIGDDTWSCI IVVLTFWFFVSMTLILGVYGAVNIRVGPNCSLLLQPNPIFVQSVKVEEVDDTKPGLKL YGFYKSPSLDVVTTWSETRTATVQADSHKEWIHYLNRGSQVNISYNVNSAGSSVFLII AQGSEGLSQWLEDPTYPNTTLSWNIVRGSGMIQQDIYRSSSYYIALGNLNSEDVEVEL NITVRAFIYNTTEAYYRCTFGNGLCSLSVLFPQGNSVVLTSPGLEQVIQSTSADDWSV RLSYGPRWIIYIVGIGGMTAIMLVAFNFLNKFQFTRGGETNLHYGENASARAPLLSNK DDDISSWGSSYDSVSSDEADLEDFLAAGSVEGTSIREGENSNNTRRLCAICFDAPRDC FFLPCGHCVACFACGSRIAEAAGTCPICRRNMKKVRKIFTV" CDS complement(join(830002..830357,830446..830518, 830758..830904,831643..831725,831803..831877, 832015..832108,832198..832323,832433..832539, 832651..832984)) /locus_tag="TCM_021694" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:29701.m000588; paralog of Thecc1EG041620t1" /codon_start=1 /product="RING/U-box superfamily protein, putative isoform 5" /protein_id="EOY07206.1" /db_xref="TAIR:AT2G38185.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IG95" /translation="MAEPNRSSPSASASASASSSSSSSSYREDSGGAAGAAASSSGTS SQVREEEEGQDHEYRQHLQHFHNPELENQHIDLVSYRGNLSGFDDSSTVIGDDTWSCI IVVLTFWFFVSMTLILGVYGAVNIRVGPNCSLLLQPNPIFVQSVKVEEVDDTKPGLKL YGFYKSPSLDVVTTWSETRTATVQADSHKEWIHYLNRGSQVNISYNVNSAGSSVFLII AQGSEGLSQWLEDPTYPNTTLSWNIVRGSGMIQQDIYRSSSYYIALGNLNSEDVEVEL NITVRAFIYNTTEAYYRCTFGNGLCSLSVLFPQGNSVVLTSPGLEQSTSADDWSVRLS YGPRWIIYIVGIGGMTAIMLVAFNFLNKFQFTRGGETNLHYGENASARAPLLSNKDDD ISSWGSSYDSVSSDEADLEDFLAAGSVEGTSIREGENSNNTRRLCAICFDAPRDCFFL PCGHCVACFACGSR" mobile_element complement(835441..835862) /note="source:CACAO_PIF_E144_scaffold_10 1 406" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 835981..836036 /note="source:CACAO_MITE_S38_scaffold_2 56 109" /mobile_element_type="transposon:TIR/MITE" gene 836674..841201 /locus_tag="TCM_021695" /note="dbxref CacaoGD:Thecc1EG021695" mRNA join(836674..837284,837385..837470,837802..837920, 838059..838169,838297..838395,838514..838636, 839026..839088,839206..839270,839598..839707, 839789..839903,839998..840063,840266..840376, 840465..840531,840646..841065) /locus_tag="TCM_021695" /product="LMBR1-like membrane protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s12350.1" /inference="similar to AA sequence:ricco:29701.m000591" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11854t00001" mRNA join(836839..837284,837385..837470,837802..837920, 838059..838169,838297..838395,838514..838636, 839026..839088,839206..839270,839598..839707, 839789..839903,839998..840063,840266..840376, 840465..841201) /locus_tag="TCM_021695" /product="LMBR1-like membrane protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s12350.1" /inference="similar to AA sequence:ricco:29701.m000591" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1199t3; inference alignment:Newbler:10:TSA:cgbaL_g11854t00001" CDS join(836935..837284,837385..837470,837802..837920, 838059..838169,838297..838395,838514..838636, 839026..839088,839206..839270,839598..839707, 839789..839903,839998..840063,840266..840376, 840465..840531,840646..840693) /locus_tag="TCM_021695" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29701.m000591" /codon_start=1 /product="LMBR1-like membrane protein isoform 1" /protein_id="EOY07207.1" /db_xref="TAIR:AT5G01460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SR93" /translation="MGDFNLALVIVAIIVCVLVFLFNVYLLVNYQHPDDANQAYFPKF VVVFGLSIAAISILMLPADVANRQACRNAIYNGACKLTLPMKDLWLAVYIVDAVLVFF IIPFAMFYYEGDQDKSVGKRIKSALLWVVTTAIVCALLLGILYGLVGKVDFTVRHLSS ATTNFPSTWEFSSGQPCIGGSGARACSAYTANASSEKTWTMRTTFPEYVVALATIVGS VLFSIFGGVGIASLPLGLIASFIRRPKAVITRSQYIKEATELGKKARELKKAADALHQ EERNGSKGRKWRKNVKAVEKELLQLEEDVKLLEEMYPQGEKAETAWALTVLGYLGKLV LGILGLIVSVAWVAHIIIYLLIDPPLSPFLNEVFIKLDDIWGLLGTVAFAFFCFYLLL AVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVALILLCSISVIQFCSTAFGYYAQ ATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFVVLAGLTFVYYVAFGWRRKKPSGRFQL SS" CDS join(836935..837284,837385..837470,837802..837920, 838059..838169,838297..838395,838514..838636, 839026..839088,839206..839270,839598..839707, 839789..839903,839998..840063,840266..840376, 840465..840585) /locus_tag="TCM_021695" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29701.m000591" /codon_start=1 /product="LMBR1-like membrane protein isoform 2" /protein_id="EOY07208.1" /db_xref="TAIR:AT5G01460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SR93" /translation="MGDFNLALVIVAIIVCVLVFLFNVYLLVNYQHPDDANQAYFPKF VVVFGLSIAAISILMLPADVANRQACRNAIYNGACKLTLPMKDLWLAVYIVDAVLVFF IIPFAMFYYEGDQDKSVGKRIKSALLWVVTTAIVCALLLGILYGLVGKVDFTVRHLSS ATTNFPSTWEFSSGQPCIGGSGARACSAYTANASSEKTWTMRTTFPEYVVALATIVGS VLFSIFGGVGIASLPLGLIASFIRRPKAVITRSQYIKEATELGKKARELKKAADALHQ EERNGSKGRKWRKNVKAVEKELLQLEEDVKLLEEMYPQGEKAETAWALTVLGYLGKLV LGILGLIVSVAWVAHIIIYLLIDPPLSPFLNEVFIKLDDIWGLLGTVAFAFFCFYLLL AVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVALILLCSISVIQFCSTAFGYYAQ ATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFVVLAGLTFVYYVAFVSFQLSSLFSLSF HSSE" mRNA join(836943..837284,837385..837470,837802..837920, 838059..838169,838297..838395,838514..838637, 839846..839903,839998..840063,840266..840376, 840465..840531,840646..841201) /locus_tag="TCM_021695" /product="LMBR1-like membrane protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s12350.1" /inference="similar to AA sequence:ricco:29701.m000591" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1150t3_C2; inference alignment:Newbler:10:TSA:cgbaL_g11854t00001" CDS join(837109..837284,837385..837470,837802..837920, 838059..838169,838297..838395,838514..838637, 839846..839903,839998..840063,840266..840376, 840465..840531,840646..840693) /locus_tag="TCM_021695" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29701.m000591" /codon_start=1 /product="LMBR1-like membrane protein isoform 3" /protein_id="EOY07209.1" /db_xref="TAIR:AT5G01460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SR93" /translation="MLPADVANRQACRNAIYNGACKLTLPMKDLWLAVYIVDAVLVFF IIPFAMFYYEGDQDKSVGKRIKSALLWVVTTAIVCALLLGILYGLVGKVDFTVRHLSS ATTNFPSTWEFSSGQPCIGGSGARACSAYTANASSEKTWTMRTTFPEYVVALATIVGS VLFSIFGGVGIASLPLGLIASFIRRPKAVITRSQYIKEATELGKKARELKKAADALHQ EERNGSKGRKWRKNVKAVEKVAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVALILL CSISVIQFCSTAFGYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFVVLAGLTFV YYVAFGWRRKKPSGRFQLSS" mobile_element 840764..840838 /note="source:scaffold_8_CACTA_0856 642 715" /mobile_element_type="transposon:TIR/CACTA" gene complement(841271..844346) /locus_tag="TCM_021696" /note="dbxref CacaoGD:Thecc1EG021696" mRNA complement(join(841271..841667,841768..841982, 842185..842325,842449..842526,844156..844346)) /locus_tag="TCM_021696" /product="SGNH hydrolase-type esterase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033960001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042517t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033960001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g04197t00001_C2" CDS complement(join(841454..841667,841768..841982, 842185..842325,842449..842526,844156..844266)) /locus_tag="TCM_021696" /note="paralog of Thecc1EG042517t1" /codon_start=1 /product="SGNH hydrolase-type esterase superfamily protein" /protein_id="EOY07210.1" /db_xref="Phytozome:GSVIVT01033960001" /db_xref="TAIR:AT3G11210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HCD7" /translation="MVGPGRPLFVLFGSSIVQFSYSNQGWGAILADIYARKADIVLRG YSGWNSRRALKVLHQVFPKDAGAQPSLVIVYFGGNDSMEPHPLGLGPHVPLPEYVENM KKIAMHLKGLSDKTRVMFLSTPPVNEEQISQTLGVQGRSNEACQIYSEACLKLCKELD VEGIDLWTAIQQRADWKTACFTDGIHLSSEGSKIVAKEILKALREAKWKPSLYWRTLP TEFEEDSAYDPICQDGRSTLNISELEFSRSVQWE" gene 845070..847033 /locus_tag="TCM_021697" /note="dbxref CacaoGD:Thecc1EG021697" mRNA join(845070..845743,845980..846057,846260..846354, 846456..846513,846606..846662,846739..847033) /locus_tag="TCM_021697" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1603t6_C2" CDS join(845666..845743,845980..846057,846260..846354, 846456..846513,846606..846662,846739..846822) /locus_tag="TCM_021697" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07211.1" /translation="MASNAINTRVLASKNALADQRNGRVGEAKTFDFSLTGASSRSCK YVLTTLMQKILKFYESDTMERLRISFGMKFYVCCKSIYKMAKSCLYNWQHTCFVILQG LTMLLLVLFPSIPPLFFEAFNFRPLIAMEKAVDFLWNEEALLLLAKQ" mobile_element complement(847021..847060) /note="source:CACAO_M_E49062_F90_scaffold_6 296 335" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(847654..849715) /locus_tag="TCM_021698" /note="dbxref CacaoGD:Thecc1EG021698" mRNA complement(join(847654..848364,848428..849191, 849563..849715)) /locus_tag="TCM_021698" /product="Transducin/WD40 repeat-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Sb10g029890.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001828t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s24010.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.96 coverage" CDS complement(join(847915..848364,848428..849191, 849563..849632)) /locus_tag="TCM_021698" /note="paralog of Thecc1EG001828t1" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein" /protein_id="EOY07212.1" /db_xref="Phytozome:POPTR_0005s24010.1" /db_xref="TAIR:AT5G14050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FMU5" /translation="MNCTSFYLDFALVGCGRNLLPFQGGGKTTINIAKVNRLRKLRKE EDESVISGSEYISRLRAQHAKLNPGTKWAELDSGLRNCTIYDDESSDEEGGVVAAHGY RNVKADDDILRKNEDLVVKSSVKLLPGLLEYSRLVDAHAEEPANGPINSVQFHRNAQL LFAAGLDRRIRFFQIDGKRNTKIQSLFLADCPVRKASFLPDGSQVIIVGRRKFFYCFD LVKAKIDKIEPLVGREEKSLEVFEVSPNSSTIAFLGNEGYILLVSTKTKGLIGTLKMN GTVYHWDLRTRTCFHKAVDEGCINGTALCTSLTGRMFAAGSDSGIVNIYNRDEFLGGK RKPIKTVENLTTEVDFMKFNSDAQILAICSTLKKNSLKLIHVPSFTVYSNWPPPNVNL HYPRCLDFSPGGGFVAVGNAAGKVLLYKLHHYSHA" mobile_element complement(849879..850053) /note="source:scaffold_1_CACTA_0008 8513 8686" /mobile_element_type="transposon:TIR/CACTA" gene 850459..854213 /locus_tag="TCM_021699" /note="dbxref CacaoGD:Thecc1EG021699" mRNA join(850459..850672,850762..850823,851743..851876, 852326..852471,852932..853003,853533..853694) /locus_tag="TCM_021699" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s10090.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033961001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g509t2; inference alignment:Newbler:10:TSA:cgbaP2_g10341t00001; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1171t4" mRNA join(850558..850672,850762..850823,851743..851876, 852326..852471,852932..853003,853533..853640, 853763..854213) /locus_tag="TCM_021699" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s10090.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033961001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g10341t00001; inference alignment:Newbler:10:TSA:cgbaP2_g10341t00001" mRNA join(<850588..850668,850762..850823,851743..851876, 852326..852471,852932..853003,853533..853640, 853763..854046) /locus_tag="TCM_021699" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s10090.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033961001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00509t00004; inference alignment:Newbler:10:TSA:cgbaP2_g10341t00001; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1171t4" mRNA join(<850588..850668,850762..850823,851743..851876, 852326..852471,852932..853003,853533..853637, 853763..854046) /locus_tag="TCM_021699" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s10090.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033961001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00509t00002; inference alignment:Newbler:10:TSA:cgbaP2_g10341t00001; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1171t4" CDS join(<850590..850668,850762..850823,851743..851876, 852326..852471,852932..853003,853533..853640, 853763..853947) /locus_tag="TCM_021699" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 3" /protein_id="EOY07215.1" /db_xref="Phytozome:GSVIVT01033961001" /db_xref="TAIR:AT5G01470.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A8MS01" /translation="TNEENGHSSLLSIFTLRRRRRRRRSLYEDQTEIHQSYVERKHQF SGIELLIREFSFHQLNANLLWPGTFAFSEWLVQHQSWIDGRRCLELGSGTGALAIFLR KSFNLDITTSDYDDQEIEENIAHNCQANGITPVLPHIKHSWGDPFPTADPDWDLVIAS DILLYVKQYPNLIKSLSYLLKSYKPKEDKAVCPVGNDQNSGKRMGLPAPAFLMSWRRR IGKEDESLFFSGCEDAGLEVEHIGSRVYCIKLRKNIVTIPQES" CDS join(<850590..850668,850762..850823,851743..851876, 852326..852471,852932..853003,853533..853637, 853763..853947) /locus_tag="TCM_021699" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 2" /protein_id="EOY07214.1" /db_xref="Phytozome:GSVIVT01033961001" /db_xref="TAIR:AT5G01470.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A8MS01" /translation="TNEENGHSSLLSIFTLRRRRRRRRSLYEDQTEIHQSYVERKHQF SGIELLIREFSFHQLNANLLWPGTFAFSEWLVQHQSWIDGRRCLELGSGTGALAIFLR KSFNLDITTSDYDDQEIEENIAHNCQANGITPVLPHIKHSWGDPFPTADPDWDLVIAS DILLYVKQYPNLIKSLSYLLKSYKPKEDKAVCPVGNDQNRKRMGLPAPAFLMSWRRRI GKEDESLFFSGCEDAGLEVEHIGSRVYCIKLRKNIVTIPQES" CDS join(850603..850672,850762..850823,851743..851876, 852326..852471,852932..853003,853533..853640, 853763..853947) /locus_tag="TCM_021699" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /protein_id="EOY07213.1" /db_xref="Phytozome:GSVIVT01033961001" /db_xref="TAIR:AT5G01470.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A8MS01" /translation="MDIALFSPSSLFADDGDDEEVSVDEDQTEIHQSYVERKHQFSGI ELLIREFSFHQLNANLLWPGTFAFSEWLVQHQSWIDGRRCLELGSGTGALAIFLRKSF NLDITTSDYDDQEIEENIAHNCQANGITPVLPHIKHSWGDPFPTADPDWDLVIASDIL LYVKQYPNLIKSLSYLLKSYKPKEDKAVCPVGNDQNSGKRMGLPAPAFLMSWRRRIGK EDESLFFSGCEDAGLEVEHIGSRVYCIKLRKNIVTIPQES" CDS join(850603..850672,850762..850823,851743..851876, 852326..852471,852932..853003,853533..853672) /locus_tag="TCM_021699" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 4" /protein_id="EOY07216.1" /db_xref="Phytozome:GSVIVT01033961001" /db_xref="TAIR:AT5G01470.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A8MS01" /translation="MDIALFSPSSLFADDGDDEEVSVDEDQTEIHQSYVERKHQFSGI ELLIREFSFHQLNANLLWPGTFAFSEWLVQHQSWIDGRRCLELGSGTGALAIFLRKSF NLDITTSDYDDQEIEENIAHNCQANGITPVLPHIKHSWGDPFPTADPDWDLVIASDIL LYVKQYPNLIKSLSYLLKSYKPKEDKAVCPVGNDQNSGNVRAKIIIY" mobile_element complement(857624..857691) /note="source:scaffold_7_CACTA_0795 2957 3025" /mobile_element_type="transposon:TIR/CACTA" gene 857874..861676 /locus_tag="TCM_021701" /note="dbxref CacaoGD:Thecc1EG021701" mRNA join(857874..858329,858753..858820,858921..858949, 859524..859720,859809..860024,860143..860274, 860415..860531,860627..860680,860772..860888, 860987..861077,861173..861237,861321..861676) /locus_tag="TCM_021701" /product="Vacuolar cation/proton exchanger 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s12290.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041626t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s12290.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02251t00001" CDS join(858063..858329,858753..858820,858921..858949, 859524..859720,859809..860024,860143..860274, 860415..860531,860627..860680,860772..860888, 860987..861077,861173..861234) /locus_tag="TCM_021701" /note="paralog of Thecc1EG041626t1" /codon_start=1 /product="Vacuolar cation/proton exchanger 3" /protein_id="EOY07217.1" /db_xref="Phytozome:POPTR_0016s12290.1" /db_xref="TAIR:AT3G51860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93Z81" /translation="MASLQEPWLLENGNLKGSSKEIRHGRTAHNLSSSSLRKKSDLTL VSKIRYGMLRQFLTNLQEVILGTKLSVLFPAIPLAVVAESYGFGRPWVFALSLLGLTP LAERVSFLTEQIAYYTGPTVGGLLNATCGNATELIIAVFALSQYKIDVVKYSLLGSVL SNLLLVLGTSLFCGGIANLRKEQKYDRRQADVNSLLLLLALLCHSLPLLFRMLGASDA VSTADSTLHLSRASSIVMLIAYLSYLIFQLFTHRPLFEAQEESDDDENGISEEAPVIG FWSGFIWLFGMTGVISLLSEYVVETIEDASNSWGISVSFISIILLPIVGNAAEHAGAI IFAFKNKLDISLGVALGSATQISMFVVPLCVIVAWTMGIKMDLNFNLLETGSLALSII TVAFALQDGTSHYMKGLVLLLLYIVIGACFFVFKTPLNQVNFTNSGIKTPTETIFRA" gene 862174..868303 /locus_tag="TCM_021702" /note="dbxref CacaoGD:Thecc1EG021702" mRNA join(862174..862508,864394..864838,865079..865135, 865308..865370,865482..865538,865634..865717, 866036..866104,866185..866297,866385..866554, 866873..866951,867586..868303) /locus_tag="TCM_021702" /product="Envelope ADP,ATP carrier protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s12280.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s10070.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1049t5" CDS join(862423..862508,864394..864838,865079..865135, 865308..865370,865482..865538,865634..865717, 866036..866104,866185..866297,866385..866554, 866873..866951,867586..867709) /locus_tag="TCM_021702" /codon_start=1 /product="Envelope ADP,ATP carrier protein" /protein_id="EOY07218.1" /db_xref="Phytozome:POPTR_0006s10070.1" /db_xref="TAIR:AT3G51870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M024" /translation="MGIKLGGGENDYSPISVESGGPNISTSVGPLRSLLPSLSATKPP LALSLLCPSSTLQIPNPSQSTMREEKPIFRLQSIPGLTPFETARNEPFLGKAWLAYGF KDGSGSARNFACLSMAEKREQRRGSAPTPGQLLNHPLAALAYVPKDVAIFAAGAIAGA AAKTVTAPLDRIKLLMQTHGVRAGQESAKKAIGFIEAIVLIGKDEGIKGYWKGNLPQV IRVVPYSAVQLFAYETYKKLFKGKDGELSVIGRLAAGACAGMTSTFITYPLDVLRLRL AVEPGCRTMSEVALTMLQEEGFASFYYGLGPSLLGIAPYIAVNFCIFDLVKKALPENY RQKTQASLLTAVVSAACATLTCYPLDTVRRQMQMRGTPYKSVLEAIPGIVECDGVIGL YRGFVPNALKNLPNSSIRLTTFDIVKRLIAASEKEFQKIVGENSHKEKQETNAEQS" gene 868454..872961 /locus_tag="TCM_021703" /note="dbxref CacaoGD:Thecc1EG021703" mRNA join(868454..868769,868851..868913,869023..869174, 869329..869429,869971..870029,870282..870328, 870408..870486,870562..870634,871000..871089, 871245..871304,871416..871529,871776..871836, 871925..872043,872181..872961) /locus_tag="TCM_021703" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29701.m000598" /inference="similar to AA sequence:Phytozome:Glyma07g18120.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:PASA:2:TSA:puevd3b020998t1a2; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc205t2" mRNA join(868454..868769,868851..868913,869023..869174, 869329..869429,869971..870029,870282..870328, 870408..870486,870562..870634,871000..871089, 871245..871304,871416..871529,871776..871836, 871925..872043,872181..872273,872352..872961) /locus_tag="TCM_021703" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29701.m000598" /inference="similar to AA sequence:Phytozome:POPTR_0006s10060.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc205t2" CDS join(868630..868769,868851..868913,869023..869174, 869329..869429,869971..870029,870282..870328, 870408..870486,870562..870634,871000..871089, 871245..871304,871416..871529,871776..871836, 871925..872043,872181..872273,872352..872579) /locus_tag="TCM_021703" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY07219.1" /db_xref="Phytozome:POPTR_0006s10060.1" /db_xref="TAIR:AT5G01510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B6IDH3" /translation="MSCSYTSQIPFPSRIFPSRRKSIEKRLRHLQNLHSSKEGQQEPD GDRNSESQDQVILLERYGNGTIKRYMLGDDLQIRAFLGKHDSTSNEFQDSHLSNPNLS WLPGILKDFILPAGFPGSVSDDYLQYMLLQFPTNVTGWICHTLVTSSLLKAVGVGSFS GTSAAASAAAIRWVSKDGIGAVGRLFIGGRFGNLFDDDPKQWRMYADFIGSAGSIFDL TTQVYPAYFLPLASLGNLAKAVARGLKDPSFRVIQNHFAISGNLGEVAAKEEVWEVTA QLLGLYLGILILDTPDLVKSYPVLVSTWGSMRLLHLWLRYLSLSALRFNTINLKRAHV LVKSHVLHSRVPGCNECNREENILSWQRFIRPRIIFGVAMEEILGGGRSISMLRTLLR IYASEKYILMVNQQRKDFEVFVSFKAGATSISVLRSVWQTYWLHENLNVSENIFDQLV KSLSEMDDRFKEFIQQLDNAGWDTHQINLRVPKEISIDECHV" CDS join(868630..868769,868851..868913,869023..869174, 869329..869429,869971..870029,870282..870328, 870408..870486,870562..870634,871000..871089, 871245..871304,871416..871529,871776..871836, 871925..872043,872181..872285) /locus_tag="TCM_021703" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY07220.1" /db_xref="Phytozome:Glyma07g18120.1" /db_xref="TAIR:AT5G01510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B6IDH3" /translation="MSCSYTSQIPFPSRIFPSRRKSIEKRLRHLQNLHSSKEGQQEPD GDRNSESQDQVILLERYGNGTIKRYMLGDDLQIRAFLGKHDSTSNEFQDSHLSNPNLS WLPGILKDFILPAGFPGSVSDDYLQYMLLQFPTNVTGWICHTLVTSSLLKAVGVGSFS GTSAAASAAAIRWVSKDGIGAVGRLFIGGRFGNLFDDDPKQWRMYADFIGSAGSIFDL TTQVYPAYFLPLASLGNLAKAVARGLKDPSFRVIQNHFAISGNLGEVAAKEEVWEVTA QLLGLYLGILILDTPDLVKSYPVLVSTWGSMRLLHLWLRYLSLSALRFNTINLKRAHV LVKSHVLHSRVPGCNECNREENILSWQRFIRPRIIFGVAMEEILGGGRSISMLRTLLR IYASEKYILMVNQQRKDFEVFVSFKVCV" gene 873261..876926 /locus_tag="TCM_021704" /note="dbxref CacaoGD:Thecc1EG021704" mRNA join(873261..873798,873882..873949,874715..875381, 875804..875904,876795..876926) /locus_tag="TCM_021704" /product="Undecaprenyl pyrophosphate synthetase family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024746001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041630t1" /inference="similar to AA sequence:Phytozome:Glyma14g37190.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g533t1" CDS join(873367..873798,873882..873949,874715..875153) /locus_tag="TCM_021704" /note="paralog of Thecc1EG041630t1" /codon_start=1 /product="Undecaprenyl pyrophosphate synthetase family protein, putative" /protein_id="EOY07221.1" /db_xref="Phytozome:Glyma14g37190.1" /db_xref="TAIR:AT5G58770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q56Y11" /translation="MHFSLQFSLPPVITALSPRSKSFSHQPHHHRIKKLTSHVPKSPL CSTTECALIHQCKEEEEEAFDGRVEDQTLPLGLRPEALPRHVAVIMDGNRRWARLRDL PVGSGYEAGVRSLRKIVELCCEWGIKVLSVFAFSSDNWFRPKVEVEFLMSLFERGMQE DTGIFLRENIRISVIGDLARLPEALQELIINLEEATKNNARFQLIVAVSYSGHYDVVQ ACQRLALKAKCGLIEPSDINESLIEQELVTKCTEFPYPDLLIRTSGEFRVSNFMLWQL AYAELFFAQSLWPDFGEAEFLKALLAFQKRQRRYGG" gene 878031..880495 /locus_tag="TCM_021705" /note="dbxref CacaoGD:Thecc1EG021705" mRNA join(878031..878293,879305..879455,879555..879621, 879709..879943,880240..880495) /locus_tag="TCM_021705" /product="RING/U-box superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400038797.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041631t2" /inference="similar to AA sequence:Phytozome:POPTR_0016s12270.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g13119t00001" CDS join(878229..878293,879305..879455,879555..879621, 879709..879943,880240..880450) /locus_tag="TCM_021705" /note="paralog of Thecc1EG041631t2" /codon_start=1 /product="RING/U-box superfamily protein" /protein_id="EOY07222.1" /db_xref="Phytozome:POPTR_0016s12270.1" /db_xref="TAIR:AT5G01520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q337S3" /translation="MRKSFKDSLKALEADIQFANTLASDYPREYDGTCLQMRLSYSPA AHLFLFLVQWTDCYLAGALGLLRILIYKAYADGKTTMSIHERKASIREFYGVIFPSLL QLQRGITDVDDRKQKEICAAKYKKRDEMNKGKLSEIDLEREEECGICMEMHSKIVLPD CNHSMCMKCYRTWHAKSQSCPFCRDSLKRVDSGDLWIYTSSNDIVDLSSILRENMKRL FMYIEKLPLIVPDPKIVSYDPRLR" gene complement(880989..883713) /locus_tag="TCM_021706" /note="dbxref CacaoGD:Thecc1EG021706" mRNA complement(join(880989..881322,881525..881602, 881694..881774,882127..882171,882263..882320, 882423..882545,882815..882891,883455..883713)) /locus_tag="TCM_021706" /product="High mobility group B1, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s19720.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042534t2" /inference="similar to AA sequence:TAIR:AT3G51880.2" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:PASA:2:TSA:puevd3b021003t1a2; alternateUTRof:Thecc1EG021706t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13039t3" mRNA complement(join(880989..881307,881525..881602, 881694..881774,882127..882171,882263..882320, 882423..882545,882815..882894,883455..883713)) /locus_tag="TCM_021706" /product="High mobility group B1 isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s19720.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042534t2" /inference="similar to AA sequence:TAIR:AT3G51880.2" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:PASA:2:TSA:puevd3b021003t1a3; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13039t3" mRNA complement(join(881000..881307,881525..881602, 881694..881774,882127..882171,882263..882320, 882423..882545,882815..882894,883455..883542)) /locus_tag="TCM_021706" /product="High mobility group B1 isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s19720.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042534t2" /inference="similar to AA sequence:TAIR:AT3G51880.2" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01385t00002; alternateUTRof:Thecc1EG021706t5; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13039t3; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc3011t1" mRNA complement(join(881017..881322,881525..881602, 881694..881774,882127..882171,882263..882320, 882423..882545,882815..882894,883455..883488)) /locus_tag="TCM_021706" /product="High mobility group B1, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s19720.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042534t2" /inference="similar to AA sequence:TAIR:AT3G51880.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13039t3; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13039t3" mRNA complement(join(881116..881318,881522..881602, 881694..881774,882127..882171,882263..882320, 882423..882545,882815..882894,883577..883713)) /locus_tag="TCM_021706" /product="High mobility group B1 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s19720.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042534t2" /inference="similar to AA sequence:TAIR:AT3G51880.2" /note="transcript variant 8; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc844t6; alternateUTRof:Thecc1EG021706t3; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13039t3; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc3011t1" mRNA complement(join(881116..881318,881522..881602, 881694..881774,882127..882171,882263..882320, 882423..882545,882815..882894,883455..883606)) /locus_tag="TCM_021706" /product="High mobility group B1 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s19720.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042534t2" /inference="similar to AA sequence:TAIR:AT3G51880.2" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc844t10; alternateUTRof:Thecc1EG021706t3; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13039t3; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc3011t1" mRNA complement(join(881116..881318,881522..881602, 881694..881774,882127..882171,882263..882320, 882423..882545,882815..882894,883030..883069, 883455..883606)) /locus_tag="TCM_021706" /product="High mobility group B1 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s19720.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042534t2" /inference="similar to AA sequence:TAIR:AT3G51880.2" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc844t7; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13039t3; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc3011t1" CDS complement(join(881241..881318,881522..881602, 881694..881774,882127..882171,882263..882320, 882423..882545,882815..882882)) /locus_tag="TCM_021706" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG042534t2" /codon_start=1 /product="High mobility group B1 isoform 3" /protein_id="EOY07225.1" /db_xref="TAIR:AT3G51880.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O49595" /translation="MKGARGKGAARNTAEALRPADDRKVGKRKALVDQSSIRKAKKER RAMKDPNKPKRPPSAFFVFLEEFRATFKKENPNVKAVSAVGKAAGEKWKSLSEDEKAP YEAKAAKRKADYEKQMNAYNRKQETAANGEESEKSKSEVNDEDDEASGEVDNNSRTMR RRKKRKRTKMMIEKVDG" CDS complement(join(881241..881318,881522..881602, 881694..881774,882127..882171,882263..882320, 882423..882545,882815..882882)) /locus_tag="TCM_021706" /note="encoded by transcript variant 6; alternatively spliced; paralog of Thecc1EG042534t2" /codon_start=1 /product="High mobility group B1 isoform 3" /protein_id="EOY07228.1" /db_xref="TAIR:AT3G51880.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O49595" /translation="MKGARGKGAARNTAEALRPADDRKVGKRKALVDQSSIRKAKKER RAMKDPNKPKRPPSAFFVFLEEFRATFKKENPNVKAVSAVGKAAGEKWKSLSEDEKAP YEAKAAKRKADYEKQMNAYNRKQETAANGEESEKSKSEVNDEDDEASGEVDNNSRTMR RRKKRKRTKMMIEKVDG" CDS complement(join(881241..881318,881522..881602, 881694..881774,882127..882171,882263..882320, 882423..882545,882815..882882)) /locus_tag="TCM_021706" /note="encoded by transcript variant 8; alternatively spliced; paralog of Thecc1EG042534t2" /codon_start=1 /product="High mobility group B1 isoform 3" /protein_id="EOY07230.1" /db_xref="TAIR:AT3G51880.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O49595" /translation="MKGARGKGAARNTAEALRPADDRKVGKRKALVDQSSIRKAKKER RAMKDPNKPKRPPSAFFVFLEEFRATFKKENPNVKAVSAVGKAAGEKWKSLSEDEKAP YEAKAAKRKADYEKQMNAYNRKQETAANGEESEKSKSEVNDEDDEASGEVDNNSRTMR RRKKRKRTKMMIEKVDG" CDS complement(join(881257..881307,881525..881602, 881694..881774,882127..882171,882263..882320, 882423..882545,882815..882882)) /locus_tag="TCM_021706" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG042534t2" /codon_start=1 /product="High mobility group B1 isoform 5" /protein_id="EOY07227.1" /db_xref="TAIR:AT3G51880.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O49595" /translation="MKGARGKGAARNTAEALRPADDRKVGKRKALVDQSSIRKAKKER RAMKDPNKPKRPPSAFFVFLEEFRATFKKENPNVKAVSAVGKAAGEKWKSLSEDEKAP YEAKAAKRKADYEKQMNAYNRKQETAANGEESEKSKSEVNDEDDEASGEPDDEEEEEE EEDEDDD" CDS complement(join(881257..881307,881525..881602, 881694..881774,882127..882171,882263..882320, 882423..882545,882815..882882)) /locus_tag="TCM_021706" /note="encoded by transcript variant 7; alternatively spliced; paralog of Thecc1EG042534t2" /codon_start=1 /product="High mobility group B1 isoform 5" /protein_id="EOY07229.1" /db_xref="TAIR:AT3G51880.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O49595" /translation="MKGARGKGAARNTAEALRPADDRKVGKRKALVDQSSIRKAKKER RAMKDPNKPKRPPSAFFVFLEEFRATFKKENPNVKAVSAVGKAAGEKWKSLSEDEKAP YEAKAAKRKADYEKQMNAYNRKQETAANGEESEKSKSEVNDEDDEASGEPDDEEEEEE EEDEDDD" CDS complement(join(881257..881322,881525..881602, 881694..881774,882127..882171,882263..882320, 882423..882545,882815..882882)) /locus_tag="TCM_021706" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042534t2" /codon_start=1 /product="High mobility group B1, putative isoform 1" /protein_id="EOY07223.1" /db_xref="TAIR:AT3G51880.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O49595" /translation="MKGARGKGAARNTAEALRPADDRKVGKRKALVDQSSIRKAKKER RAMKDPNKPKRPPSAFFVFLEEFRATFKKENPNVKAVSAVGKAAGEKWKSLSEDEKAP YEAKAAKRKADYEKQMNAYNRKQETAANGEESEKSKSEVNDEDDEASGEEGQQQPDDE EEEEEEEDEDDD" CDS complement(join(881257..881322,881525..881602, 881694..881774,882127..882171,882263..882320, 882423..882545,882815..882882)) /locus_tag="TCM_021706" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG042534t2" /codon_start=1 /product="High mobility group B1, putative isoform 1" /protein_id="EOY07226.1" /db_xref="TAIR:AT3G51880.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O49595" /translation="MKGARGKGAARNTAEALRPADDRKVGKRKALVDQSSIRKAKKER RAMKDPNKPKRPPSAFFVFLEEFRATFKKENPNVKAVSAVGKAAGEKWKSLSEDEKAP YEAKAAKRKADYEKQMNAYNRKQETAANGEESEKSKSEVNDEDDEASGEEGQQQPDDE EEEEEEEDEDDD" mRNA complement(join(<881289..881322,881525..881602, 881694..881774,882127..882171,882263..882320, 882423..882545,882815..882894,883455..883596)) /locus_tag="TCM_021706" /product="High mobility group B1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s19720.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042534t2" /inference="similar to AA sequence:TAIR:AT3G51880.2" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.69 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g10508t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13039t3; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc3011t1" CDS complement(join(<881290..881322,881525..881602, 881694..881774,882127..882171,882263..882320, 882423..882545,882815..882882)) /locus_tag="TCM_021706" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042534t2" /codon_start=1 /product="High mobility group B1 isoform 2" /protein_id="EOY07224.1" /db_xref="TAIR:AT3G51880.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O49595" /translation="MKGARGKGAARNTAEALRPADDRKVGKRKALVDQSSIRKAKKER RAMKDPNKPKRPPSAFFVFLEEFRATFKKENPNVKAVSAVGKAAGEKWKSLSEDEKAP YEAKAAKRKADYEKQMNAYNRKQETAANGEESEKSKSEVNDEDDEASGEEGQQQPDDE EE" mobile_element complement(884126..884258) /note="source:CACAO_PIF_E119_scaffold_3 4553 4685" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(884391..884554) /note="source:scaffold_10_CACTA_0127 10156 10244" /mobile_element_type="transposon:TIR/CACTA" gene 885060..886538 /locus_tag="TCM_021708" /note="dbxref CacaoGD:Thecc1EG021708" mRNA join(885060..885650,886049..886538) /locus_tag="TCM_021708" /product="Light-harvesting complex II protein Lhcb4" /inference="alignment:exonerate- protein:2:ricco:29701.m000601" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042535t1" /inference="similar to AA sequence:ricco:29701.m000601" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g04842t00001" CDS join(885156..885650,886049..886408) /locus_tag="TCM_021708" /note="dbxref ricco:29701.m000601; paralog of Thecc1EG042535t1" /codon_start=1 /product="Light-harvesting complex II protein Lhcb4" /protein_id="EOY07231.1" /db_xref="TAIR:AT3G08940.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HCM1" /translation="MAATAAAAATSSFMGTRLPDVYTSSGRVVARFGLGRKKAARKVS KPTSDRPLWYPGAVAPEWLDGSLVGDYGFDPFGLGKPAEYLQYELDSLDQNLAKNVAG EIIGTRTEVSDVKATPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTW QDAGKVELVEGSSYLGQPLPFNISTLIWIEVLLIGYIEFQRNAELDPEKRLYPGGKFF DPLGLASDPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHT TIIDTFTS" gene 887436..889737 /locus_tag="TCM_021709" /note="dbxref CacaoGD:Thecc1EG021709" mRNA join(887436..887606,887998..888211,888295..888367, 888883..889042,889276..889734) /locus_tag="TCM_021709" /product="Peptidase S24/S26A/S26B/S26C family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29701.m000603" /inference="similar to AA sequence:ricco:29701.m000603" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g582t1" mRNA join(887456..887606,887986..888211,888295..888367, 888883..889042,889276..889737) /locus_tag="TCM_021709" /product="Peptidase S24/S26A/S26B/S26C family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29701.m000603" /inference="similar to AA sequence:ricco:29701.m000603" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00766t00001; alternateUTRof:Thecc1EG021709t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g582t1" CDS join(888046..888211,888295..888367,888883..889042, 889276..889383) /locus_tag="TCM_021709" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29701.m000603" /codon_start=1 /product="Peptidase S24/S26A/S26B/S26C family protein isoform 1" /protein_id="EOY07232.1" /db_xref="TAIR:AT3G08980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IG86" /translation="MGTPSVLWNVAKKCFTVGLVSLTVSDRFASIVSVRGGSMSPTFN PKTNTLFGSLSDDYVLVEKFCLQKYKFSHGDVVVFSSPYDHKEKHVKRIIGLPGDWVG THYDVVKVPEGHCWVEGDNSASSMDSRSFGPVPLGLVNGRVVHILWPPHRVGSVERKA PQHRVSSS" CDS join(888046..888211,888295..888367,888883..889042, 889276..889383) /locus_tag="TCM_021709" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29701.m000603" /codon_start=1 /product="Peptidase S24/S26A/S26B/S26C family protein isoform 1" /protein_id="EOY07233.1" /db_xref="TAIR:AT3G08980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IG86" /translation="MGTPSVLWNVAKKCFTVGLVSLTVSDRFASIVSVRGGSMSPTFN PKTNTLFGSLSDDYVLVEKFCLQKYKFSHGDVVVFSSPYDHKEKHVKRIIGLPGDWVG THYDVVKVPEGHCWVEGDNSASSMDSRSFGPVPLGLVNGRVVHILWPPHRVGSVERKA PQHRVSSS" gene 889335..893315 /locus_tag="TCM_021710" /note="dbxref CacaoGD:Thecc1EG021710" mRNA join(889335..889462,890682..890798,891895..891938, 892511..892619,892736..892791,892866..893176) /locus_tag="TCM_021710" /product="Yippee family zinc-binding protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032842001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042536t4" /inference="similar to AA sequence:Phytozome:GSVIVT01032842001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1163t11_C2; alternateUTRof:Thecc1EG021710t2; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1159t6" mRNA join(890467..890581,890682..890798,891895..891938, 892511..892619,892736..892791,892866..893107) /locus_tag="TCM_021710" /product="Yippee family zinc-binding protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032842001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042536t4" /inference="similar to AA sequence:Phytozome:GSVIVT01032842001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g15359t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1159t6" mRNA join(890574..890798,891213..891279,891842..891938, 892511..892619,892736..892791,892866..893315) /locus_tag="TCM_021710" /product="Yippee family zinc-binding protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032842001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042536t4" /inference="similar to AA sequence:Phytozome:GSVIVT01032842001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1159t6" mRNA join(890684..890798,891895..891938,892511..892619, 892736..892791,892866..893176) /locus_tag="TCM_021710" /product="Yippee family zinc-binding protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032842001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042536t4" /inference="similar to AA sequence:Phytozome:GSVIVT01032842001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1003t10; alternateUTRof:Thecc1EG021710t2; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1159t6" CDS join(890703..890798,891213..891279,891842..891938, 892511..892619,892736..892791,892866..892950) /locus_tag="TCM_021710" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042536t4" /codon_start=1 /product="Yippee family zinc-binding protein, putative isoform 1" /protein_id="EOY07234.1" /db_xref="Phytozome:GSVIVT01032842001" /db_xref="TAIR:AT2G40110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LE51" /translation="MGRLFVITLEGSVYSCKHCQTHLALLADIISKNFDGWSHCDGRK PKEGHVCLNDGIVQQHRDILTQPLPVFQSFHCRHGRAYLFDKVVNITVGEKEERMMMT GMHTVVDIFCVGCGSIVGWKYEAAHEKLQKYKEGKFILERFKVLGPDGSNYLVSQEAM VGGSDADDA" CDS join(890703..890798,891895..891938,892511..892619, 892736..892791,892866..892950) /locus_tag="TCM_021710" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042536t4" /codon_start=1 /product="Yippee family zinc-binding protein, putative isoform 2" /protein_id="EOY07235.1" /db_xref="Phytozome:GSVIVT01032842001" /db_xref="TAIR:AT2G40110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LE51" /translation="MGRLFVITLEGSVYSCKHCQTHLALLADIISKSFHCRHGRAYLF DKVVNITVGEKEERMMMTGMHTVVDIFCVGCGSIVGWKYEAAHEKLQKYKEGKFILER FKVLGPDGSNYLVSQEAMVGGSDADDA" CDS join(890703..890798,891895..891938,892511..892619, 892736..892791,892866..892950) /locus_tag="TCM_021710" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG042536t4" /codon_start=1 /product="Yippee family zinc-binding protein, putative isoform 2" /protein_id="EOY07236.1" /db_xref="Phytozome:GSVIVT01032842001" /db_xref="TAIR:AT2G40110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LE51" /translation="MGRLFVITLEGSVYSCKHCQTHLALLADIISKSFHCRHGRAYLF DKVVNITVGEKEERMMMTGMHTVVDIFCVGCGSIVGWKYEAAHEKLQKYKEGKFILER FKVLGPDGSNYLVSQEAMVGGSDADDA" CDS join(890703..890798,891895..891938,892511..892619, 892736..892791,892866..892950) /locus_tag="TCM_021710" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG042536t4" /codon_start=1 /product="Yippee family zinc-binding protein, putative isoform 2" /protein_id="EOY07237.1" /db_xref="Phytozome:GSVIVT01032842001" /db_xref="TAIR:AT2G40110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LE51" /translation="MGRLFVITLEGSVYSCKHCQTHLALLADIISKSFHCRHGRAYLF DKVVNITVGEKEERMMMTGMHTVVDIFCVGCGSIVGWKYEAAHEKLQKYKEGKFILER FKVLGPDGSNYLVSQEAMVGGSDADDA" gene 895749..899703 /locus_tag="TCM_021711" /note="dbxref CacaoGD:Thecc1EG021711" mRNA join(895749..896227,896308..896440,897478..897592, 897872..898906,899065..899703) /locus_tag="TCM_021711" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s12230.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042539t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s19760.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01167t00001" CDS join(896101..896227,896308..896440,897478..897592, 897872..898906,899065..899325) /locus_tag="TCM_021711" /note="paralog of Thecc1EG042539t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07238.1" /db_xref="Phytozome:POPTR_0010s19760.1" /db_xref="TAIR:AT2G40070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HSQ1" /translation="MVMKERDEELALFLEMRRREKEKEKNNNLLSLHNSEQLNAPLGS NVNVNGNGGGGSPISKIVSAVPVRKTAADIFLNSENEKSDYDWLLTPPGTPLFPSLEM ESQKTLMSQIGMSNARPTALKTRLANHREEPASKSTLAPKQQTLSAGLNSSTNLNKRP SSSGGPKSASRPATPTGRPTLPTATKPTRSSTPTSRATLPSTKPAASTARSSTPTRST ARSSTPTARPSLPASKSTSRSATPTRRPATSSSTPIASAPTGRSSSVTRSAPTTSSVP RSAPLTSSVMKSAPPMSSATKSAPTTSKNSVPSRGTSPTVKSRPWKPSEMPGFSLDTP PNLRTSLPERPASATRGRPAAGGTRSASVEASSNGRPRRQSCSPARSRASSGSVCGNG SSIRSARRADTNGCDNDSPVVIGTKMVERVVNMRKLVPPKQDDNPRNNPTAKLSASLD SSGFGRTLSKKSLDMALRHMDIRRSIPGNQRPLMTNVPASSIYSVRSGSTKSRTVSVS DSPLATSSNASSEPSVNNNSFCIDGIEMEYNDLSSERGNSSPTSQPAR" gene complement(900239..901069) /locus_tag="TCM_021712" /note="dbxref CacaoGD:Thecc1EG021712" mRNA complement(900239..901069) /locus_tag="TCM_021712" /product="HSP20-like chaperones superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400068679" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015401t1" /inference="similar to AA sequence:ricco:29673.m000922" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc3021t1" CDS complement(900370..900894) /locus_tag="TCM_021712" /note="dbxref ricco:29673.m000922; paralog of Thecc1EG015401t1" /codon_start=1 /product="HSP20-like chaperones superfamily protein" /protein_id="EOY07239.1" /db_xref="TAIR:AT5G53400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GZU9" /translation="MSKLTPNKANGLDMENHSWGQNLQEVTVSIPVSQGTRSRDVICD IKKKYLKIELKGQAPILDGELFGTVKPDECYWSLEDQSMISVFLTKCDKSNWWKSLLK GGPEIDTQKAEPEPSKLSDLDFETRSAVEKMMFDQRQKQLGLPTSQEIENQEMLKKFM AQNPNFDFSNAKMM" gene 901808..905263 /locus_tag="TCM_021713" /note="dbxref CacaoGD:Thecc1EG021713" mRNA join(901808..902055,902248..902395,903085..903197, 903448..903658,903790..904027,904330..904480, 904569..905191) /locus_tag="TCM_021713" /product="Kinase superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29701.m000608" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029907t4" /inference="similar to AA sequence:Phytozome:POPTR_0016s12220.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g537t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g537t1" mRNA join(901829..902114,902248..902395,903031..903197, 903448..903690,903756..904027,904330..904480, 904569..905263) /locus_tag="TCM_021713" /product="Kinase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29701.m000608" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029907t4" /inference="similar to AA sequence:Phytozome:POPTR_0016s12220.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g537t1" mRNA join(902058..902114,902248..902395,903448..903658, 903790..904027,904330..904480,904569..905191) /locus_tag="TCM_021713" /product="Kinase superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:29701.m000608" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029907t4" /inference="similar to AA sequence:Phytozome:GSVIVT01033973001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g537t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g537t1" CDS join(902323..902395,903031..903197,903448..903690, 903756..904027,904330..904480,904569..904925) /locus_tag="TCM_021713" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG029907t4" /codon_start=1 /product="Kinase superfamily protein isoform 1" /protein_id="EOY07240.1" /db_xref="Phytozome:POPTR_0016s12220.1" /db_xref="TAIR:AT3G09010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BC93" /translation="MSCRCFGLFELFKGRNSHDQKQAQVPDKVLICSCVCCICAWLEF ATDNIRLFSYNSLRSATSDFHPSNRIGGGGFGVVYRGVLRDGTQVAIKTLSAESKQGL REFVTEIDMISNIRHPNLVELIGCCVDDNHRILVYEYLENNSLASVLLGNHITPMPST FGVLMSRNHNFSGSRSKYIALDWPKRAAICLGTASGLAFLHYEAVPHIVHRDIKASNI LLDGNFQPKIGDFGLAKLFPENVTHVSTRVAGTVGYLAPEYALLGQLTKKADVYSFGV LVLELISGRSSSKAAFGVELMLLVEWTWKLKEEERLLDIVDPELTNYPQGEVMRFIKV ALFCTQATAHQRPTMKQVVEMLSKDVHLNEKILTKPGVYKGPTSRHLGASGSGTSSFS KTKGKQSADPSSSTNIYSSHSITEMLPR" CDS join(902323..902395,903085..903197,903448..903658, 903790..904027,904330..904480,904569..904925) /locus_tag="TCM_021713" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG029907t4" /codon_start=1 /product="Kinase superfamily protein isoform 2" /protein_id="EOY07241.1" /db_xref="Phytozome:POPTR_0016s12220.1" /db_xref="TAIR:AT3G09010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BC93" /translation="MSCRCFGLFELFKGRNSHDQKQAQEFATDNIRLFSYNSLRSATS DFHPSNRIGGGGFGVVYRGVLRDGTQVAIKTLSAESKQGLREFVTEIDMISNIRHPNL VELIGCCVDDNHRILVYEYLENNSLASVLLGSRSKYIALDWPKRAAICLGTASGLAFL HYEAVPHIVHRDIKASNILLDGNFQPKIGDFGLAKLFPENVTHVSTRVAGTVGYLAPE YALLGQLTKKADVYSFGVLVLELISGRSSSKAAFGVELMLLVEWTWKLKEEERLLDIV DPELTNYPQGEVMRFIKVALFCTQATAHQRPTMKQVVEMLSKDVHLNEKILTKPGVYK GPTSRHLGASGSGTSSFSKTKGKQSADPSSSTNIYSSHSITEMLPR" CDS join(902375..902395,903448..903658,903790..904027, 904330..904480,904569..904925) /locus_tag="TCM_021713" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG029907t4" /codon_start=1 /product="Kinase superfamily protein isoform 3" /protein_id="EOY07242.1" /db_xref="Phytozome:GSVIVT01033973001" /db_xref="TAIR:AT3G09010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BC93" /translation="MTRNKLKGVLRDGTQVAIKTLSAESKQGLREFVTEIDMISNIRH PNLVELIGCCVDDNHRILVYEYLENNSLASVLLGSRSKYIALDWPKRAAICLGTASGL AFLHYEAVPHIVHRDIKASNILLDGNFQPKIGDFGLAKLFPENVTHVSTRVAGTVGYL APEYALLGQLTKKADVYSFGVLVLELISGRSSSKAAFGVELMLLVEWTWKLKEEERLL DIVDPELTNYPQGEVMRFIKVALFCTQATAHQRPTMKQVVEMLSKDVHLNEKILTKPG VYKGPTSRHLGASGSGTSSFSKTKGKQSADPSSSTNIYSSHSITEMLPR" mobile_element 903297..903350 /note="source:scaffold_5_CACTA_0580 13309 13364" /mobile_element_type="transposon:TIR/CACTA" gene complement(905852..908876) /locus_tag="TCM_021714" /note="dbxref CacaoGD:Thecc1EG021714" mRNA complement(join(905852..905876,906118..906528, 907577..907730,907955..908876)) /locus_tag="TCM_021714" /product="Clathrin light chain protein" /inference="alignment:exonerate- protein:2:ricco:29701.m000609" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042540t1" /inference="similar to AA sequence:ricco:29701.m000609" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13038t1" CDS complement(join(906148..906528,907577..907730, 907955..908316)) /locus_tag="TCM_021714" /note="dbxref ricco:29701.m000609; paralog of Thecc1EG042540t1" /codon_start=1 /product="Clathrin light chain protein" /protein_id="EOY07243.1" /db_xref="TAIR:AT3G51890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHM6" /translation="MSSRPFDDDGYIGYDPRLASQRFESYSNFETDSVKDSVADSPPM FNNQSYGTGDDVFVSQPMPETPSPPPIYGSGGGYSAFSSEQNGKGFNGEFGGLDGPIL PPPADVEAEEGFALREWRRQNAIQLEEKEKKEKEMLEQIIKEADEYKVEFYRKRSTAV ENNKASNREKEKLFLASREKFHAEAEKNYWKAIAELIPHEVPAIEKRGKKDKEKKPSI VVIQGPKPGKPTDLSRMRQILVKLKHNPPPHMKPKPPPPAEAKKDAKTGTPAPPVAPG AGPSAAPPKTAAATTPKTVAAA" gene 910934..918625 /locus_tag="TCM_021715" /note="dbxref CacaoGD:Thecc1EG021715" mRNA join(910934..911423,911519..911989,912427..912637, 912896..913053,913144..913214,913318..913423, 913518..913607,913878..914019,914124..914527, 914610..914667,915093..915208,915303..915356, 915617..915713,916182..916586,917006..917082, 917568..918625) /locus_tag="TCM_021715" /product="RNA polymerase II C-terminal domain phosphatase-like 2 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033975001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029910t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033975001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:PASA:2:TSA:puevd3b021012t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g632t4" mRNA join(910934..911423,911519..911989,912427..912637, 912896..913053,913144..913214,913318..913423, 913518..913607,913878..914019,914124..914527, 914610..914667,915093..915208,915303..915356, 915617..915713,916182..916339,917006..917082, 917568..918625) /locus_tag="TCM_021715" /product="RNA polymerase II C-terminal domain phosphatase-like 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033975001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029910t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033975001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g632t4" mRNA join(910949..911423,911519..911989,912427..912637, 912896..913053,913144..913214,913318..913423, 913518..913607,913878..914019,914124..914527, 914610..914667,915093..915208,915300..915356, 915617..915713,916182..916339,916413..916586, 917006..917082,917566..918031) /locus_tag="TCM_021715" /product="RNA polymerase II C-terminal domain phosphatase-like 2 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033975001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029910t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033975001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g632t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g632t4; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc812t16" mRNA join(910949..911423,911519..911989,912427..912637, 912896..913053,913144..913214,913318..913423, 913518..913607,913878..914019,914124..914527, 914610..914667,915093..915208,915303..915356, 915617..915713,916182..916339,916413..916586, 917006..917082,917568..918031) /locus_tag="TCM_021715" /product="RNA polymerase II C-terminal domain phosphatase-like 2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033975001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029910t3" /inference="similar to AA sequence:Phytozome:GSVIVT01033975001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g632t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g632t4; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc812t16" mRNA join(910992..911423,911519..911989,912427..912637, 912896..913053,913144..913214,913318..913423, 913518..913607,913869..914019,914124..914527, 914610..914667,915093..915208,915303..>915354) /locus_tag="TCM_021715" /product="RNA polymerase II C-terminal domain phosphatase-like 2 isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033975001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029910t3" /inference="similar to AA sequence:Phytozome:GSVIVT01033975001" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc793t9; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g632t4; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc812t16" CDS join(911154..911423,911519..911989,912427..912637, 912896..913053,913144..913214,913318..913423, 913518..913607,913878..914019,914124..914527, 914610..914667,915093..915208,915303..915356, 915617..915713,916182..916339,917006..917082, 917568..917673) /locus_tag="TCM_021715" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG029910t1" /codon_start=1 /product="RNA polymerase II C-terminal domain phosphatase-like 2 isoform 1" /protein_id="EOY07244.1" /db_xref="Phytozome:GSVIVT01033975001" /db_xref="TAIR:AT5G01270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5YDB5" /translation="MSRLGFKSVVYHGDVCLGELDTIPVSDTNFQFPNNEIRIHHISP PSERCIPLSVLHTVSSFPVRCKLESSSPVEQPHLIHLHASCFYELKTAVVLVGDEEVH LVPMPSKQKKFPCFWCFSVPTGLYNSCLGMLNLRCLAIVFDLDETLIVANTMKSFEDR IEALRGWLARETDTIRHLGMSAELRRYIDDRMLLKQYTESDCVVDNGKMFKVQMEEVP PLSDGHEKVVRPVIRLQERNIVLTRINPEIRDTSVLVRLRPAWEELRSYLTAKGRKRF EVYVCTMAERDYALEMWRLLDPEAHLIGSKQLLDRVVCVKSGSRKSLLNVFRDGKCHP QMAMVIDDRSKVWEDKDQPRVHVVPPFAPYYAPQAETANAVPVLCVARNVACNVRGLF FKEFDENVIRKISEVFYEDEVVNLPLAPDVSNHLMLEDAGFAPNGNGGAPISEGMNGV EVERRLNQLEEKHVSDSSTHLVMNNPELRYETSQPPVAIVPNVVGPASLTAPLPSQKP SLLGAPGLLSAPTLLGASVRRESNTIDSDYDMKRRALGSKQTLDLRNQSSVQPPLLSK VPAQISSSSILPQGGWLVEEDNNKAHLNDRSSGSAQEFDATKSDKLRNQNPFSHSAPG SVSTGLPSHASQVKVEEAHAGLDTQKQNVPPAGHLSEIGGTQNHVSSTEGGKLNLLPS HLSISVLQEIGRRCGSKVEFRTVVSTSKDLQFSVEVLFTGEKIGVGMGKTRKDAQQQA AELALHNLAEKYLAYIAPRSGAVDRDFNKLSLGTENGFLWDVNPASSEALREDGLPKD STSEVADVEPGSNSSSLVNQPVQKRANSPRSSESMPSKRSKEEVLRRLRSLSSSRQPK NEHPIS" CDS join(911154..911423,911519..911989,912427..912637, 912896..913053,913144..913214,913318..913423, 913518..913607,913878..914019,914124..914527, 914610..914667,915093..915208,915300..915356, 915617..915713,916182..916339,916413..916529) /locus_tag="TCM_021715" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG029910t1" /codon_start=1 /product="RNA polymerase II C-terminal domain phosphatase-like 2 isoform 3" /protein_id="EOY07246.1" /db_xref="Phytozome:GSVIVT01033975001" /db_xref="TAIR:AT5G01270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5YDB5" /translation="MSRLGFKSVVYHGDVCLGELDTIPVSDTNFQFPNNEIRIHHISP PSERCIPLSVLHTVSSFPVRCKLESSSPVEQPHLIHLHASCFYELKTAVVLVGDEEVH LVPMPSKQKKFPCFWCFSVPTGLYNSCLGMLNLRCLAIVFDLDETLIVANTMKSFEDR IEALRGWLARETDTIRHLGMSAELRRYIDDRMLLKQYTESDCVVDNGKMFKVQMEEVP PLSDGHEKVVRPVIRLQERNIVLTRINPEIRDTSVLVRLRPAWEELRSYLTAKGRKRF EVYVCTMAERDYALEMWRLLDPEAHLIGSKQLLDRVVCVKSGSRKSLLNVFRDGKCHP QMAMVIDDRSKVWEDKDQPRVHVVPPFAPYYAPQAETANAVPVLCVARNVACNVRGLF FKEFDENVIRKISEVFYEDEVVNLPLAPDVSNHLMLEDAGFAPNGNGGAPISEGMNGV EVERRLNQLEEKHVSDSSTHLVMNNPELRYETSQPPVAIVPNVVGPASLTAPLPSQKP SLLGAPGLLSAPTLLGASVRRESNTIDSDYDMKRRALGSKQTLDLRNQSSVQPPLLSK VPAQISSSSILPQGGWLVEEDNNKAHLNDRSSGSAQEFDATKSDKLRNQNPFSHSAPG SVSTGLPSHASQVKVEEAHAGLDTQKQNVPPAGHLSEIGGTQNHVSSTEGGKLNLLPS HLSISVLQEIGRRCGSKKVEFRTVVSTSKDLQFSVEVLFTGEKIGVGMGKTRKDAQQQ AAELALHNLAEKYLAYIAPRSGAVDRDFNKLSLGTENGFLWDVNPASSEALREDGLPK DSTSEGMWARNFQIRGSGYLERNHSSLDFALHQDVRAITLKGE" CDS join(911154..911423,911519..911989,912427..912637, 912896..913053,913144..913214,913318..913423, 913518..913607,913878..914019,914124..914527, 914610..914667,915093..915208,915303..915356, 915617..915713,916182..916339,916413..916529) /locus_tag="TCM_021715" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG029910t3" /codon_start=1 /product="RNA polymerase II C-terminal domain phosphatase-like 2 isoform 2" /protein_id="EOY07245.1" /db_xref="Phytozome:GSVIVT01033975001" /db_xref="TAIR:AT5G01270.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5YDB5" /translation="MSRLGFKSVVYHGDVCLGELDTIPVSDTNFQFPNNEIRIHHISP PSERCIPLSVLHTVSSFPVRCKLESSSPVEQPHLIHLHASCFYELKTAVVLVGDEEVH LVPMPSKQKKFPCFWCFSVPTGLYNSCLGMLNLRCLAIVFDLDETLIVANTMKSFEDR IEALRGWLARETDTIRHLGMSAELRRYIDDRMLLKQYTESDCVVDNGKMFKVQMEEVP PLSDGHEKVVRPVIRLQERNIVLTRINPEIRDTSVLVRLRPAWEELRSYLTAKGRKRF EVYVCTMAERDYALEMWRLLDPEAHLIGSKQLLDRVVCVKSGSRKSLLNVFRDGKCHP QMAMVIDDRSKVWEDKDQPRVHVVPPFAPYYAPQAETANAVPVLCVARNVACNVRGLF FKEFDENVIRKISEVFYEDEVVNLPLAPDVSNHLMLEDAGFAPNGNGGAPISEGMNGV EVERRLNQLEEKHVSDSSTHLVMNNPELRYETSQPPVAIVPNVVGPASLTAPLPSQKP SLLGAPGLLSAPTLLGASVRRESNTIDSDYDMKRRALGSKQTLDLRNQSSVQPPLLSK VPAQISSSSILPQGGWLVEEDNNKAHLNDRSSGSAQEFDATKSDKLRNQNPFSHSAPG SVSTGLPSHASQVKVEEAHAGLDTQKQNVPPAGHLSEIGGTQNHVSSTEGGKLNLLPS HLSISVLQEIGRRCGSKVEFRTVVSTSKDLQFSVEVLFTGEKIGVGMGKTRKDAQQQA AELALHNLAEKYLAYIAPRSGAVDRDFNKLSLGTENGFLWDVNPASSEALREDGLPKD STSEGMWARNFQIRGSGYLERNHSSLDFALHQDVRAITLKGE" CDS join(911154..911423,911519..911989,912427..912637, 912896..913053,913144..913214,913318..913423, 913518..913607,913878..914019,914124..914527, 914610..914667,915093..915208,915303..915356, 915617..915713,916182..916372) /locus_tag="TCM_021715" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG029910t1" /codon_start=1 /product="RNA polymerase II C-terminal domain phosphatase-like 2 isoform 4" /protein_id="EOY07247.1" /db_xref="Phytozome:GSVIVT01033975001" /db_xref="TAIR:AT5G01270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5YDB5" /translation="MSRLGFKSVVYHGDVCLGELDTIPVSDTNFQFPNNEIRIHHISP PSERCIPLSVLHTVSSFPVRCKLESSSPVEQPHLIHLHASCFYELKTAVVLVGDEEVH LVPMPSKQKKFPCFWCFSVPTGLYNSCLGMLNLRCLAIVFDLDETLIVANTMKSFEDR IEALRGWLARETDTIRHLGMSAELRRYIDDRMLLKQYTESDCVVDNGKMFKVQMEEVP PLSDGHEKVVRPVIRLQERNIVLTRINPEIRDTSVLVRLRPAWEELRSYLTAKGRKRF EVYVCTMAERDYALEMWRLLDPEAHLIGSKQLLDRVVCVKSGSRKSLLNVFRDGKCHP QMAMVIDDRSKVWEDKDQPRVHVVPPFAPYYAPQAETANAVPVLCVARNVACNVRGLF FKEFDENVIRKISEVFYEDEVVNLPLAPDVSNHLMLEDAGFAPNGNGGAPISEGMNGV EVERRLNQLEEKHVSDSSTHLVMNNPELRYETSQPPVAIVPNVVGPASLTAPLPSQKP SLLGAPGLLSAPTLLGASVRRESNTIDSDYDMKRRALGSKQTLDLRNQSSVQPPLLSK VPAQISSSSILPQGGWLVEEDNNKAHLNDRSSGSAQEFDATKSDKLRNQNPFSHSAPG SVSTGLPSHASQVKVEEAHAGLDTQKQNVPPAGHLSEIGGTQNHVSSTEGGKLNLLPS HLSISVLQEIGRRCGSKVEFRTVVSTSKDLQFSVEVLFTGEKIGVGMGKTRKDAQQQA AELALHNLAEKYLAYIAPRSGAVDRDFNKLSLGTENGFLWDVNPASSEALREDGLPKD STSEVGIPDDAFST" CDS join(911154..911423,911519..911989,912427..912637, 912896..913053,913144..913214,913318..913423, 913518..913607,913869..914019,914124..914527, 914610..914667,915093..915208,915303..>915353) /locus_tag="TCM_021715" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG029910t3" /codon_start=1 /product="RNA polymerase II C-terminal domain phosphatase-like 2 isoform 5" /protein_id="EOY07248.1" /db_xref="Phytozome:GSVIVT01033975001" /db_xref="TAIR:AT5G01270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5YDB5" /translation="MSRLGFKSVVYHGDVCLGELDTIPVSDTNFQFPNNEIRIHHISP PSERCIPLSVLHTVSSFPVRCKLESSSPVEQPHLIHLHASCFYELKTAVVLVGDEEVH LVPMPSKQKKFPCFWCFSVPTGLYNSCLGMLNLRCLAIVFDLDETLIVANTMKSFEDR IEALRGWLARETDTIRHLGMSAELRRYIDDRMLLKQYTESDCVVDNGKMFKVQMEEVP PLSDGHEKVVRPVIRLQERNIVLTRINPEIRDTSVLVRLRPAWEELRSYLTAKGRKRF EVYVCTMAERDYALEMWRLLDPEAHLIGSKQLLDRVVCVKSGSRKSLLNVFRDGKCHP QMAMVIDDRSKVWEDKDQPRVHVVPPFAPYYAPQAETANAVPVLCVARNVACNVRGLF FKEFDENVIRKISEVFYEDEVVNLPLAPDVSNHLMLEDAGFAPNGNGGAPISEGMNGV EVERRLNQLFLQEEKHVSDSSTHLVMNNPELRYETSQPPVAIVPNVVGPASLTAPLPS QKPSLLGAPGLLSAPTLLGASVRRESNTIDSDYDMKRRALGSKQTLDLRNQSSVQPPL LSKVPAQISSSSILPQGGWLVEEDNNKAHLNDRSSGSAQEFDATKSDKLRNQNPFSHS APGSVSTGLPSHASQVKVEEAHAGLDTQKQNVPPAGHLSEIGGTQNHVSSTEGGKLNL LPSHLSISVLQEIGRRCGSKVEFRTVVSTSKDLQFSV" gene 918204..922179 /locus_tag="TCM_021716" /note="dbxref CacaoGD:Thecc1EG021716" mRNA 918204..922179 /locus_tag="TCM_021716" /product="TATA box-binding protein-associated factor RNA polymerase I subunit C, putative" /inference="alignment:exonerate- protein:2:ricco:28582.m000322" /inference="similar to AA sequence:ricco:28582.m000322" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1579t3" CDS 918788..921520 /locus_tag="TCM_021716" /note="dbxref ricco:28582.m000322" /codon_start=1 /product="TATA box-binding protein-associated factor RNA polymerase I subunit C, putative" /protein_id="EOY07249.1" /db_xref="TAIR:AT3G18310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I4V0" /translation="MELSEEWKSYFPIGKSLDPPLLLSSASPGPLFFIPKPRTLPKTL FSSPSLFPPLHPPPSRLSFSRFLSTSSVPYSASSSIASRFGLESFYDDAASSSFLSHN RLHLLHCPDQNIAVVFFTTGANHDRIGFFAVHVQDNDFKFLGDRDGDILISHNHCNHK ILRILVSPVDDDDFEENSGDSVVGYLMACTLYSVHWYSVKFVKSSKSPALDYLGCKLF KSSSIVSACFSPHLPQESMVLLENGALFFFDLESDVNCQIPNAYFKGNKLRVLWNDSS GSENYKWLGVEFSWHPRILIVARSDAVFLVDNRLDQCNVICLAKVEMLSPYTVDEEDQ FLAFSRAGADGFQFVLASRSLLVLCDVRKPMMPLLRWAHNLDNPCYIHVFRLSELRSQ SRDDRYHWATESGFCIILGSFWNCEFRLFCYGPSPASEGSTASEIAKFCKPFLAWDLP SDLSLSSRECHCGSCLVREEFSKGALPEWVDWQQKKDIVLGFGILNRDISELVCESDE FGGFTLIRLMSSGKIETQRYCASWDLVQKLDVGHREPLLNFEDSLLYSFGDDEYKFPK KFKYLNLDYLRGYLNGNVAEVLDSKMKSCKGPLEKESFGLDFHEILCEKLKVCGFGRF RSSPPLAIVFNDISSPTSICEVASRQMWATLPLELLLLAFSGYSDLFDAPFDDNTMPL KFSVVPDLPQLPPFLLRKPSCCSTKWSHKVWPDDSLVGPVLPLPVLLTLHEFRNGCPD SENMCEYSSEVELGLRCNEVMQVAAEMAVSDSSLLDNDEAISLADDRDGMWLDSQRPK PFFLYHPVGGEPSSTGQLQGNHMYKDEKFITMITKVHEKEADSSVTMANVGLELFDDL CLIELKFDVPAMNFMSQELEAYKTLKRQFSKWQEHFNPYQELCKQNNLNSQRRE" gene complement(922222..926051) /locus_tag="TCM_021717" /note="dbxref CacaoGD:Thecc1EG021717" mRNA complement(join(922222..922665,923169..923313, 924031..924774,924859..925019,925097..925136, 925497..926051)) /locus_tag="TCM_021717" /product="Carbohydrate-binding-like fold, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g28520.2" /inference="similar to AA sequence:Phytozome:POPTR_0016s12180.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00355t00004" CDS complement(join(922622..922665,923169..923313, 924031..924774,924859..925019,925097..925136, 925497..925712)) /locus_tag="TCM_021717" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Carbohydrate-binding-like fold, putative isoform 1" /protein_id="EOY07250.1" /db_xref="Phytozome:POPTR_0016s12180.1" /db_xref="TAIR:AT5G01260.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HKS9" /translation="MKTLTSSCSKAIIDKHRDKGLSCFNDLSLNRGEVCLFPSKKLVR IRLLRLLSVQHRRLQPVLSSSSLSPDSQVDFETAETQPAEENPSKTVHVKFQLQKECS FGEHFFIVGDHPMLGIWDPESAIPLNWLKGHVWTVELDIPVGKSIQFKFVLKTSTGNL LWQPGPDRIFKSWETENTIIVSEDWEEAEYQKLIEEEPSANQDGPVLDSEMAIVAENL TPPKEELVSDMELVSETDSITNLEKEPLQAFSEELATSSGAPSLEEPLAIVAENISYP TENFVANVDNVVLGVKRTDYPNDEALATSNKNHLVAEDLGNIGRVETVQNPATADVEG NLVVHEGSPVLVPGLTPLDTVSTEEANLDEYEKNSITEASIEVNEANYQKMPELDEKQ EPEGEPQEEKPTAVSKDEEEQLDNRHIQSRQLAREQPDPDPFQIGNLETRIEEGVRQ" mRNA complement(join(922640..923313,924031..924774, 924859..925019,925097..925134,925496..925892)) /locus_tag="TCM_021717" /product="Carbohydrate-binding-like fold, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g28520.2" /inference="similar to AA sequence:Phytozome:POPTR_0016s12180.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1354t12_C2; inference alignment:Newbler:10:TSA:cgbaL_g00355t00004" mRNA complement(join(922784..923313,924031..924774, 924859..925136,925497..925772)) /locus_tag="TCM_021717" /product="Carbohydrate-binding-like fold, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g28520.2" /inference="similar to AA sequence:Phytozome:POPTR_0016s12180.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00355t00002; inference alignment:Newbler:10:TSA:cgbaL_g00355t00004" CDS complement(join(923092..923313,924031..924774, 924859..925019,925097..925134,925496..925611)) /locus_tag="TCM_021717" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Carbohydrate-binding-like fold, putative isoform 2" /protein_id="EOY07251.1" /db_xref="Phytozome:POPTR_0016s12180.1" /db_xref="TAIR:AT5G01260.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HKS9" /translation="MLVPFQKASENPAPAFAFCATQAPAACFVIFFLVTRLTGDFETA ETQPAEENPSKTVHVKFQLQKECSFGEHFFIVGDHPMLGIWDPESAIPLNWLKGHVWT VELDIPVGKSIQFKFVLKTSTGNLLWQPGPDRIFKSWETENTIIVSEDWEEAEYQKLI EEEPSANQDGPVLDSEMAIVAENLTPPKEELVSDMELVSETDSITNLEKEPLQAFSEE LATSSGAPSLEEPLAIVAENISYPTENFVANVDNVVLGVKRTDYPNDEALATSNKNHL VAEDLGNIGRVETVQNPATADVEGNLVVHEGSPVLVPGLTPLDTVSTEEANLDEYEKN SITEASIEVNEANYQKMPELDEKQEPEGEPQEEKPTAVSKDEEEQLDNRHIQSRQLAR EQPDPDPFQSNVLQSDVQWGRKTLKRLLNSLRFL" CDS complement(join(923092..923313,924031..924774, 924859..924933)) /locus_tag="TCM_021717" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Carbohydrate-binding-like fold, putative isoform 3" /protein_id="EOY07252.1" /db_xref="Phytozome:POPTR_0016s12180.1" /db_xref="TAIR:AT5G01260.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HKS9" /translation="MLGIWDPESAIPLNWLKGHVWTVELDIPVGKSIQFKFVLKTSTG NLLWQPGPDRIFKSWETENTIIVSEDWEEAEYQKLIEEEPSANQDGPVLDSEMAIVAE NLTPPKEELVSDMELVSETDSITNLEKEPLQAFSEELATSSGAPSLEEPLAIVAENIS YPTENFVANVDNVVLGVKRTDYPNDEALATSNKNHLVAEDLGNIGRVETVQNPATADV EGNLVVHEGSPVLVPGLTPLDTVSTEEANLDEYEKNSITEASIEVNEANYQKMPELDE KQEPEGEPQEEKPTAVSKDEEEQLDNRHIQSRQLAREQPDPDPFQSNVLQSDVQWGRK TLKRLLNSLRFL" gene 928004..932146 /locus_tag="TCM_021718" /note="dbxref CacaoGD:Thecc1EG021718" mRNA join(928004..931205,931368..932146) /locus_tag="TCM_021718" /product="LRR receptor-like serine/threonine-protein kinase, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s10000.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042545t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s10000.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.40 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g553t1" CDS join(928448..931205,931368..931774) /locus_tag="TCM_021718" /note="paralog of Thecc1EG042545t1" /codon_start=1 /product="LRR receptor-like serine/threonine-protein kinase, putative" /protein_id="EOY07253.1" /db_xref="Phytozome:POPTR_0006s10000.1" /db_xref="TAIR:AT3G47570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HCL8" /translation="MLLSCALLYNKPVLNFLLLFNVNTLLLLCIITWLHSHSPVFAAT TLHANETDRLALLAIKAQLTQDPLGLTSSWNDSLHFCNWSGVICGHGHQRVITLNLSY HDLVGSLSPYVGNLTFLRGISLEQNYFHGEIPPEVGRLSGLRYLNFSNNSLSGEIPAN LSGCSNLIMLRLGFNKLIGKIPYQLGSLQKLERFQLHYNNLSGPIPASLGNLSSVRSL SFSVNSFEGTIPDALGQLKTLNFLGLGLNQLTGIVPPSIFNLSSITIFTLPFNQLHGN LPSNLGFALPNLRVLNIGHNQFTGALPESLSNGSNLLEFDINGSNFTGKVNIDFGGLP VLWSLVLASNPLGRGEADDLDFLNSLTKCRNLQILDLSNDQFGGVIPISFGNLSTELV QLRLGGNKLWGSIPTGIKNLVNLTELTMEQNNLTGNIPAVIGNLRMLRLLDLSENQFS GNLPSSIANISQLYKLHLQSNNFTGNIPSSFGNLTSLQDLDLSQNYLSGAIPKNVIGL SSLTISLNLAQNQLTGLLPSEVSNLKNLGHLDVSENQLSGEIPSGLGSCVTLEQIYME GNFFEGTIPNSFRFLRGLRDLDLSRNNLSGQIPEYLQRLSLMTLNLSFNEFEGMVPTT GVFKNTTALSIVGNKKLCGGIPELKLSPCRNSNSKKGTLSRRHKFMIAFLSASVGLVL IVSLLIVNRLRKLKREPALPLASASVKKELLPRVSYESLQKATDGFSSENLIGAGSFG SVYKGILDQNENIVAVKVLYLHQPGALKSFMAECETLRNIRHRNLVKLLTACSSVDFQ GNEFKALVYEFMPNGSLESWLHPVPNAGGDGMEDDLRILSLTQRANIAIDVACALEYL HHHCQKPIVHRDLKPSNILLDNDMTAHVSDFGLAKFLLEAMERSQTNQSSSAGLKGTV GYAAPEYGMGGMASTYGDIYSYGILLLEMFTGKRPTDETFKDGLDLHNFVKTALPERI LEVLDPLFVAGGGGEEEEIANEGGCILVETKKDLLQNSLTEILKIGVACSLEQPRERM KLGDVIKELQLVRGLLLGSDMTQR" gene complement(932186..939979) /locus_tag="TCM_021719" /note="dbxref CacaoGD:Thecc1EG021719" mRNA complement(join(932186..933133,933335..935398, 939109..939979)) /locus_tag="TCM_021719" /product="Leucine-rich repeat protein kinase family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g17910.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021718t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s12170.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2321t3" CDS complement(join(932700..933133,933335..935398, 939109..939625)) /locus_tag="TCM_021719" /note="paralog of Thecc1EG021718t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein, putative" /protein_id="EOY07254.1" /db_xref="Phytozome:POPTR_0016s12170.1" /db_xref="TAIR:AT3G47570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IG78" /translation="MFGICNDTYFANESDRLALLDFKNRVTQDPLHVMASWNNFVHFC SWVGITCSPSNGRVVILNLEGQKLVGSIPPSIGNLTFLTGINLVNNTFRGEIPQEIGR LLRLQHLNLTYNSFGGKTPSNLTHCVELATIRLGYNGLIGRIPDQLASLSKLKILELG ANNLTGTIRTWIAQNNLQGTIPDELGQLSGLGGFHLYGNYLSGIIPPSIYNISSIYYF SVTQNQLQGHLPPDVGLTLPNLEIFAGGVNNFTGTIPVSLSNASRLQIIDFAENGLTG TIPGNLGNLEDLIRLNFDDNKLGTGKIGDLSFFGSLTNISALEVLGLSGNRFGGELPS SIANLSDKLKIFTIGRNLIHGSIPVGIGNLVNLNSLGMEGNQLEGTLPDVLGKLQNLE GLQLNYNRFSGSMPFSLGNLTALTRLFMDENRFEGSIPPSLGNCQNLLELNFSSNNLS GTIPREILALSSLSISLSMSHNSLSGSIPVEVGNLNILAELDLAENRLSGEIPSSLAS CISLERLYLEGNAFEGKIPLSLKSLRGLEEIDLSRNNLSGQIPEFLSKILFLKHLNLS HNDFDGEVSQAGIFGNASAFSVVENNKLCGGVQDLHLPTCTRKSPGRRLAPKVVIPVT GAVIFVVLLLCSYASYHRVRNSGSQSNASFSKEWQLCMSYSDIVKATDGFSEENLIGS GSFGSVYKGTISRDETVVAIKVLNLQQQGASRSFIDECNALRSVRHRNLLKIITACST VDHQGNDFKALVFEFMPNGNLDQWLHPGGNDQYQSMRLSLIQRLNIAIDIASALDYLH HHCVTPIVHCDLKPSNVLLDENIAAHVGDFGLARFIFDSSSNASRSQTMSVRLKGSMG YIPPEYGMGGQVSIHGDTYSYGILLLEMLTGKRPTDDSFEDDLGICEFVDRALPGHVM DIVDRSMLFEEENVHKKVRGNREDYVEERALIKNQNSHVSSVRRREECLISMMKIGLS CAATLPSERLTMTVVVNNLLDIKAMLVAISGF" gene complement(935203..936476) /locus_tag="TCM_021720" /note="dbxref CacaoGD:Thecc1EG021720" mRNA complement(join(935203..936007,936067..936083, 936173..936476)) /locus_tag="TCM_021720" /product="EF-TU receptor, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g17910.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021719t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s12170.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.32 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc3629t5" CDS complement(935508..936002) /locus_tag="TCM_021720" /note="paralog of Thecc1EG021719t1" /codon_start=1 /product="EF-TU receptor, putative" /protein_id="EOY07255.1" /db_xref="Phytozome:POPTR_0016s12170.1" /db_xref="TAIR:AT5G20480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IG78" /translation="MKLTCLFFQGILLLWMSSCSESAMIPAFANESDRLALLDFKNRV TQDPLHVMDSWNNSVHFCSWVGVTCSPSNGRVVILNLKGQKLVGSIPPSIGNLTFLTR INLVNNNFRGEIPQEIGRLLRLQHLNLSYNSFGGQIPTNLTQCTELAIIHIGFNGLIG QIPD" mobile_element 936601..936662 /note="source:INTACT687_F13_scaffold_3-int 1929 1989" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 937600..937803 /note="source:CACAO_LINE_E_177_scaffold_6 49 250" /mobile_element_type="retrotransposon:LINE/L1" mobile_element complement(937620..938129) /note="source:scaffold_5_CACTA_0603 2029 2544" /mobile_element_type="transposon:TIR/CACTA" mobile_element 938100..938120 /note="source:MITE_Unknow_TSD_5_14 29 94" /mobile_element_type="transposon:TIR/MITE" mobile_element 938121..938170 /note="source:CACAO_M_S_E65805_F7_scaffold_5 5101 5143" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 938175..938411 /note="source:MITE_Unknow_TSD_5_6 1 237" /mobile_element_type="transposon:TIR/MITE" gene complement(940719..941711) /locus_tag="TCM_021721" /note="dbxref CacaoGD:Thecc1EG021721" mRNA complement(join(940719..941225,941366..941711)) /locus_tag="TCM_021721" /product="Leucine-rich repeat protein kinase family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400009672.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021719t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s12170.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Newbler:10:TSA:cgbaL_g05272t00001" CDS complement(join(940798..941225,941366..941681)) /locus_tag="TCM_021721" /note="paralog of Thecc1EG021719t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein, putative" /protein_id="EOY07256.1" /db_xref="Phytozome:POPTR_0016s12170.1" /db_xref="TAIR:AT3G47570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IG78" /translation="MSNGSLYQWLHPGGNDRYQTKKLSLIQRLDIAIDVASALDYLHH QCETPIVHCDLKPSNLLLDENMTAHVGDFRLARFLFDSSDNPSSNQTISIKLKGSIGY IPPEYGIGGQASIHGDIYSYGILLLEMFTGKSPTDDMFKDDQSLHNFVEVALPEHVMD VVDLSMLSEEENAEETELIMMRKPHPRVSAASMVEEFVVPVMKMGLSCSAASPTERMI MTFVVNKLNDIKDRFLKLKRNNERRMRRR" gene complement(941767..944441) /locus_tag="TCM_021722" /note="dbxref CacaoGD:Thecc1EG021722" mRNA complement(join(941767..941837,941966..943583, 943689..944441)) /locus_tag="TCM_021722" /product="Leucine-rich repeat protein kinase family protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021719t1" /inference="similar to AA sequence:Phytozome:Glyma18g42770.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.32 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2998t1" CDS complement(join(941806..941837,941966..943583, 943689..943868)) /locus_tag="TCM_021722" /note="paralog of Thecc1EG021719t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein" /protein_id="EOY07257.1" /db_xref="Phytozome:Glyma18g42770.1" /db_xref="TAIR:AT3G47570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IG78" /translation="MDSWNYSVPFCKWVDVACSPSSGRVVVLNLENHKVVAPYHLPLE TLHSLLESTWKEMDFMNLRVLDTSYNEFVGQIPEQLSTLSKLAILRLTGNSLTGRIPA WIGHLSSLHSLVLSMNNLQGSIPSELGQLSGLGYFQLYGNYLSGIVPPIYNVSSIYFF SVAQNQLQGHLPPDAGLTFPNLGVFACGVNNFTGPIPVSLSNASRLQIIDFTNNSLTG TMPGNLGSLPGLIRLNFDDNQLGTGGIGDLSFLNFLSNCSFLEVLGLAGNRLGGELPS SITNLSNLLQRLTMGENLISGSIPIGIGNLVSLYILGLERNYFSGSVPTVIGKLQKLE ELNLEGNRFSGSIPSSLGNLTLLNGLYLHDNKFEGSIPPSLGNCQNLLAINLSSNNLT GITPIQILGLSSLKKCLFISHNFLTGSLPVEVGQLDQLEKLDLSQNKLSGEIPESLGS YTSLESLHLEHNSFGGTIPLSLESLRGIEEIDLSYNNLSGQIPEFLRKIVSLRHLNLS YNDFEGEVSQEGIFANASVISILGKNKLCGGISELYLPPCSTTSSGKNLTLIVISVTI NVVTLIFLLFCSFVTYSSVRSHSIPSSSKEWRSGIKPSTARSF" mobile_element complement(946515..946638) /note="source:CACAO_Helitron_E18_scaffold_1 1 133" /mobile_element_type="transposon:Helitron" gene 949100..951723 /locus_tag="TCM_021723" /note="dbxref CacaoGD:Thecc1EG021723" mRNA join(949100..951252,951332..951723) /locus_tag="TCM_021723" /product="Lactosylceramide 4-alpha-galactosyltransferase, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s12140.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021725t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s12140.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc3402t2" CDS 949279..950565 /locus_tag="TCM_021723" /note="paralog of Thecc1EG021725t1" /codon_start=1 /product="Lactosylceramide 4-alpha-galactosyltransferase, putative" /protein_id="EOY07258.1" /db_xref="Phytozome:POPTR_0016s12140.1" /db_xref="TAIR:AT3G09020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SZC5" /translation="MTVKKVASHEVFGCRLVSRAKSPVVTVILFALLIFFMFADSLVS NISLHSAAFDEKEDSEVLQARKFIRKMKSDVSAVQLDVSTQRKIINVDSEHHDSPVSS SVVREEQGTGRFRRKLPENEIFRSDELTKKFHGRVLEFFNQKCEVQFFMTWISTVESF GRREMLSVESVFKAHPHGCLMILSRTMDSVNGYRILKPLLDRCFKVLAVTPDMPFLLK NTPAEAWFDAIKSGKKDPGEIPLAQNLSNLMRLAVLYKYGGVYLDTDFIVLKSFKGLK NTIGAQSIHAESKNWTRLNNAVLVFDMNHPLLFKFIEEFALTFDGNKWGHNGPYMVSR VARRVEGRPGYNFTILPPMAFYPVDWIKIGSLFKMPKARADSRWVEAKLLQLTRETYG VHLWNKQSSKLMVEQGSVMGRLISENCVLCEHIYSS" gene complement(950816..952019) /locus_tag="TCM_021724" /note="dbxref CacaoGD:Thecc1EG021724" mRNA complement(join(950816..951509,951817..952019)) /locus_tag="TCM_021724" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s09970.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s09970.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc5109t1" CDS complement(950901..951506) /locus_tag="TCM_021724" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07259.1" /db_xref="Phytozome:POPTR_0006s09970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HCL6" /translation="MISSEITREQDEENTYFINSEVEKESIRWIIQYQKSLYWSSSSS SSLSSSAASSSSVSSCRSSSLLELMRSGSTSLKRLFEMEHTSLLTHFEDYSGSPMTKS IPLWGSDTDGEVQDPWESIKQTGPFHSFETGTPSGFASDGRFMEKDFSFRNRRTKNGN HRLTRKKSFRRLPGFGLWRCTGFRIRLRLRRLRTMICGKMF" mobile_element complement(952457..952663) /note="source:CACAO_on_S_E390_scaffold_9 2159 2366" /mobile_element_type="transposon:TIR/Mutator" gene 953247..955244 /locus_tag="TCM_021725" /note="dbxref CacaoGD:Thecc1EG021725" mRNA 953247..955244 /locus_tag="TCM_021725" /product="Alpha 1,4-glycosyltransferase family protein" /inference="alignment:exonerate-protein:2:frave:gene18839" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021726t2" /inference="similar to AA sequence:frave:gene18839" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13044t1" CDS 953474..954817 /locus_tag="TCM_021725" /note="dbxref frave:gene18839; paralog of Thecc1EG021726t2" /codon_start=1 /product="Alpha 1,4-glycosyltransferase family protein" /protein_id="EOY07260.1" /db_xref="TAIR:AT2G38150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7LKT7" /translation="MSPQKKFSVRSMLGPFRRMSKKSLTYRLISRMAKSPVLSTISLA AILFFIYADSLMSNLPVHNANIKTGEVFPSTQTQTTPVVEGEGQVATSLNSLPVAAAT TIQERKIEETENEDPLIPPFKASVDERMEWFRRKLPELEILKSNELSERFHGRVLELF NNKCSAQFFMVWLSTAQSFGPREFLAVDSLFSTAPDGCLLILSSSMDSPKGYRILKPL IDRGFNVLAVTPDLPFLVKNTPAEPWLDDLKSGNMDPGSIPLFNHLSDLIRLAVLYKY GGVYLDTDFIFLKDLSGLRNAIGAQSINQQTKKWTRLNGAVMIFDIHHPVLVEFLREY ATTFNGNRWGHNGPYLVSRVLERLRENSEYNITVFPPKAFYPVDWIKIAKLFKKPETE ADLKWADDTLADISNDSYVVHLWNKRSRELKIEEGSVMARMIAEHCNICENIYDP" gene 956399..958506 /locus_tag="TCM_021726" /note="dbxref CacaoGD:Thecc1EG021726" mRNA join(956399..956633,956723..958506) /locus_tag="TCM_021726" /product="Lactosylceramide 4-alpha-galactosyltransferase, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene18840" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021725t1" /inference="similar to AA sequence:frave:gene18840" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc568t1; alternateUTRof:Thecc1EG021726t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc573t4" mRNA 956606..958504 /locus_tag="TCM_021726" /product="Lactosylceramide 4-alpha-galactosyltransferase, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene18840" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021725t1" /inference="similar to AA sequence:frave:gene18840" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc573t4; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc573t4" CDS 956774..958087 /locus_tag="TCM_021726" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene18840; paralog of Thecc1EG021725t1" /codon_start=1 /product="Lactosylceramide 4-alpha-galactosyltransferase, putative isoform 1" /protein_id="EOY07261.1" /db_xref="TAIR:AT2G38150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SZC5" /translation="MAVRNLFRMSSYQLFLCSVKLPIFSTISLFFTISVAAVFFIIYE NILTSNLSMYPEHITTTEIITALSTKSEGQSRSIFSSKPLQINTEGKVEGVDNENLDP LIPPSNVTREERIAWFQKKLPELELFKSNNLSSQFHDQVLGFFDRDCTIRYFMIWLSP AQSFGPREFAALDSLFKASPKGCLMILSPSLDSRQGYRILKPLIDGGFKVLAVTPDLH FLVKNTPAEGWLDEMKNGSKDPGNISLSYNLSNLIRLAILYKYGGVYLDVDFIILKDF MGLRNAIGAQSIDPITRKWTRINGAAMIFNDAHPLLLDFLQEFAMTFDGSKWGHNGPY LVSRVIGRVGNAPGYNLTILPPKTFYPMTWTNIDRLFKKPETEAELQWVEDTLVTLKS STQAIHLWNHRTRDFMIEEGSVIERLISAYCVICQQRNNQQILPI" CDS 956774..958087 /locus_tag="TCM_021726" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene18840; paralog of Thecc1EG021725t1" /codon_start=1 /product="Lactosylceramide 4-alpha-galactosyltransferase, putative isoform 1" /protein_id="EOY07262.1" /db_xref="TAIR:AT2G38150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SZC5" /translation="MAVRNLFRMSSYQLFLCSVKLPIFSTISLFFTISVAAVFFIIYE NILTSNLSMYPEHITTTEIITALSTKSEGQSRSIFSSKPLQINTEGKVEGVDNENLDP LIPPSNVTREERIAWFQKKLPELELFKSNNLSSQFHDQVLGFFDRDCTIRYFMIWLSP AQSFGPREFAALDSLFKASPKGCLMILSPSLDSRQGYRILKPLIDGGFKVLAVTPDLH FLVKNTPAEGWLDEMKNGSKDPGNISLSYNLSNLIRLAILYKYGGVYLDVDFIILKDF MGLRNAIGAQSIDPITRKWTRINGAAMIFNDAHPLLLDFLQEFAMTFDGSKWGHNGPY LVSRVIGRVGNAPGYNLTILPPKTFYPMTWTNIDRLFKKPETEAELQWVEDTLVTLKS STQAIHLWNHRTRDFMIEEGSVIERLISAYCVICQQRNNQQILPI" gene complement(958228..958968) /locus_tag="TCM_047048" /note="dbxref CacaoGD:Thecc1EG047048" mRNA complement(join(958228..958506,958590..958654, 958748..958968)) /locus_tag="TCM_047048" /product="Plastid-specific ribosomal protein 4" /inference="alignment:exonerate- protein:2:TAIR:AT2G38140.1" /inference="similar to AA sequence:frave:gene18841" /note="quality class is strong-expertchoice, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.44 coverage; inference alignment:Newbler:10:TSA:cgbaB_g16830t00001" CDS complement(join(958372..958506,958590..958654, 958748..958913)) /locus_tag="TCM_047048" /note="dbxref frave:gene18841" /codon_start=1 /product="Plastid-specific ribosomal protein 4" /protein_id="EOY07263.1" /db_xref="TAIR:AT2G38140.1" /translation="MASLLLGAAPVPAQSVNLSSLSRISSSHSQTLGTSLSVSTSSVS LSTASSPSIPYVYCGRGDKKTKKGKRFNHSFGNARPRNKKKGRGPPRVPIPPSPPRKD KFDDDEKIKIEIDESLFSS" gene complement(961175..965540) /locus_tag="TCM_021727" /note="dbxref CacaoGD:Thecc1EG021727" mRNA complement(join(961175..961598,962203..962460, 962623..962830,963360..963457,963563..963746, 963855..963967,964145..964330,964443..964773)) /locus_tag="TCM_021727" /product="Transmembrane amino acid transporter family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033986001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042567t2" /inference="similar to AA sequence:Phytozome:Glyma07g17810.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1115t4; alternateUTRof:Thecc1EG021727t1; inference alignment:Newbler:10:TSA:cgbaB_g05488t00001" mRNA complement(join(961356..961598,962203..962460, 962623..962830,963360..963457,963563..963746, 963855..963967,964145..964330,964443..964660, 964965..965540)) /locus_tag="TCM_021727" /product="Transmembrane amino acid transporter family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033986001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042567t2" /inference="similar to AA sequence:Phytozome:Glyma07g17810.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05488t00001" CDS complement(join(961377..961598,962203..962460, 962623..962830,963360..963457,963563..963746, 963855..963967,964145..964330,964443..964616)) /locus_tag="TCM_021727" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042567t2" /codon_start=1 /product="Transmembrane amino acid transporter family protein isoform 1" /protein_id="EOY07264.1" /db_xref="Phytozome:Glyma07g17810.2" /db_xref="TAIR:AT2G38120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LFB2" /translation="MLPPKQAEEAIVSNFSETEHETREEEKEDEQHSMFSVKSFLWHG GSAWDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILLQVFYGLLGSWTAYLISVLYIE YRSRKEKENVSFKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNI YYINDKLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIASLVHG QVDGVTHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLLATLYVF TLTLPSASAVYWAFGDQLLNHSNAFSLLPKNRFRDAAVILMLIHQFITFGFACTPLYF VWEKVIGMHDTRSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIP ALAHMLTYRKASARQNAAEKPPFFMPSWTAMYVFNAFVVVWVLVVGFGFGGWASMTNF IRQIDTFGLFAKCYQCKPPTPVPGAAAQHH" CDS complement(join(961377..961598,962203..962460, 962623..962830,963360..963457,963563..963746, 963855..963967,964145..964330,964443..964616)) /locus_tag="TCM_021727" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042567t2" /codon_start=1 /product="Transmembrane amino acid transporter family protein isoform 1" /protein_id="EOY07265.1" /db_xref="Phytozome:Glyma07g17810.2" /db_xref="TAIR:AT2G38120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LFB2" /translation="MLPPKQAEEAIVSNFSETEHETREEEKEDEQHSMFSVKSFLWHG GSAWDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILLQVFYGLLGSWTAYLISVLYIE YRSRKEKENVSFKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNI YYINDKLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIASLVHG QVDGVTHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLLATLYVF TLTLPSASAVYWAFGDQLLNHSNAFSLLPKNRFRDAAVILMLIHQFITFGFACTPLYF VWEKVIGMHDTRSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIP ALAHMLTYRKASARQNAAEKPPFFMPSWTAMYVFNAFVVVWVLVVGFGFGGWASMTNF IRQIDTFGLFAKCYQCKPPTPVPGAAAQHH" gene 966736..971237 /locus_tag="TCM_021729" /note="dbxref CacaoGD:Thecc1EG021729" mRNA join(966736..966984,967497..967864,970900..971237) /locus_tag="TCM_021729" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.15 coverage" CDS join(966916..966984,967497..967826) /locus_tag="TCM_021729" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07266.1" /translation="MKTAGAEPSRAEMDPPRCGTLLKGGDEGSDGGNGDGGRVVVVVV EPPSHHGFKEGEGAAEESIYGTPCKMEEMLMIFHTKLLRNPFPTGICRLGEGFLTLAR SPPSTSPTCPLRSLYLTHTLAFASFFHLIL" gene 974526..980215 /locus_tag="TCM_021730" /note="dbxref CacaoGD:Thecc1EG021730" mRNA join(974526..974612,978591..978709,979539..980215) /locus_tag="TCM_021730" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS join(978612..978709,979539..979707) /locus_tag="TCM_021730" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07267.1" /translation="MIQSGIHLDMEDKDYFGVNASTSSSLTIPPFSRILEIFGRPFDG IQSIDYFQYDLSLRITGTIEFVGIFLTLRIPLWTVFNSGETWHW" mobile_element 981235..981900 /note="source:CACAO_Helitron_E81_scaffold_3 2558 3226" /mobile_element_type="transposon:Helitron" gene complement(981800..989889) /locus_tag="TCM_021731" /note="dbxref CacaoGD:Thecc1EG021731" mRNA complement(join(981800..983100,983193..983686, 984119..984339,984458..984617,984817..985166, 989524..989889)) /locus_tag="TCM_021731" /product="Major facilitator superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033988001" /inference="similar to AA sequence:Phytozome:GSVIVT01033988001" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete" mobile_element 982099..982153 /note="source:CACAO_Helitron_S_E53_scaffold_8 103 157" /mobile_element_type="transposon:Helitron" CDS complement(join(982167..983100,983193..983686, 984119..984339,984458..984617,984817..984900)) /locus_tag="TCM_021731" /codon_start=1 /product="Major facilitator superfamily protein, putative" /protein_id="EOY07268.1" /db_xref="Phytozome:GSVIVT01033988001" /db_xref="TAIR:AT3G53960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HKT4" /translation="MILEILCGQSAVLFSQMNFSDVLFPLLLLANQLGIMRIERNSSD DRGCKAAAGNMFSKLGCVVTNWIRYHIYFSRGALFISGLVFSHGLAEHAVMCILTSYF MENWKKTDLRQAAAVVNVEEGASTIMAIIVSYISDAYFCRFKVIVHTTGLCIIGLLLL GVSTWISPEVDVRLLYPVVILLAVGKAGRDHPLKAFIVDQLTDSKPNQAIDKEQVEAR KNFWWRVAWSLGLVASFCLSTSSLRCSFFTSALVMAVAYLWFLSGINFYCYKKPEGSP LTVVYKVFKAAVLKRHLAYPTSANGYFKNDRDQLLLWPIVPFFRWLDKASIVESSSCQ LKLEEQEITGRLCSVVQVKQVKCLLTLVPIWTTFAVYGLVEATGRTFFVAQANDMDDN IGSLSVVCLFLTLKSFVSFLVSFLFQLLIPKWLSGAKRQCIILVRIGLGMVFSIFSCI AAWQVEVHRMNLIKEEKFSDQYTRLTITITIFWLAPQFTLLGLMGGFAEDGIRDLIYN YHVADQSKKLHDSSFRDCTLAIGNFLNILFAFIFRAWFRDNINNSRLDKYFLMLAMLT IGNLCLYFLAALVWYRKFWPEEETQQEKVKLNLDVTLEDALTDSVTDNSLSNNFFYCT IINRLI" mobile_element 985002..989986 /note="source:CACAO_M_E34377_F10_scaffold_5 1 4985" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 990974..991238 /note="source:CACAO_Mutator_E39_scaffold_1 10745 11030" /mobile_element_type="transposon:TIR/Mutator" mobile_element 991009..993396 /note="source:CACAO_on_E459_scaffold_2 147 2549" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 991066..992039 /locus_tag="TCM_021733" /note="dbxref CacaoGD:Thecc1EG021733" mRNA 991066..992039 /locus_tag="TCM_021733" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.73 coverage" CDS 991085..991366 /locus_tag="TCM_021733" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07269.1" /translation="MAGHAPSHPLTIPSPSLPIKSPTTMHQGFWPPTPWCQNPPSPGC PNFWTTRLFKKTHTKIKGEIYQQEDPATETKAKKTNTKQEKKKRVRSEK" mobile_element 991239..991318 /note="source:INTACT555_F251_scaffold_2-int 10404 10721" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 998085..999617 /locus_tag="TCM_021735" /note="dbxref CacaoGD:Thecc1EG021735" mRNA join(998085..998682,998781..999076,999185..999325, 999436..999617) /locus_tag="TCM_021735" /product="Plasma membrane intrinsic protein 1,4" /inference="alignment:exonerate- protein:2:ricco:29969.m000266" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042573t1" /inference="similar to AA sequence:ricco:29969.m000266" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13066t1" CDS join(998349..998682,998781..999076,999185..999325, 999436..999528) /locus_tag="TCM_021735" /note="dbxref ricco:29969.m000266; paralog of Thecc1EG042573t1" /codon_start=1 /product="Plasma membrane intrinsic protein 1,4" /protein_id="EOY07270.1" /db_xref="TAIR:AT4G00430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P43286" /translation="MEGQNEDVRLGANKYRERQPIGTAAQSQDVKDYNDPPSAPIFEP GELSSWSFYRAGIAEFVATFLFLYITVLTVMGVVKSSSKCSTVGIQGIAWAFGGMIFA LVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKSFQKTPY ERLGGGANTVSSGYSKTSGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIG FAVFLVHLATIPITGTGINPARSLGAALIYNKEQAWADHWIFWVGPFIGAALAALYHQ IVIRAVLFKSK" gene 1004733..1007546 /locus_tag="TCM_021737" /note="dbxref CacaoGD:Thecc1EG021737" mRNA join(1004733..1005545,1006199..1007546) /locus_tag="TCM_021737" /product="Glycerol-3-phosphate acyltransferase 6" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s09900.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005317t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s09900.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02375t00001" CDS join(1004922..1005545,1006199..1007086) /locus_tag="TCM_021737" /note="paralog of Thecc1EG005317t1" /codon_start=1 /product="Glycerol-3-phosphate acyltransferase 6" /protein_id="EOY07271.1" /db_xref="Phytozome:POPTR_0006s09900.1" /db_xref="TAIR:AT2G38110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80437" /translation="MVMGAHRRFEPISKCSNEGRSNQTVAADLDGTLLLSRSAFPYFM LVALEAGSLVRALVLLASVPFVYFTYLFISESVAINTFIFITFAGLKVKDIELVSRSV LPKFYAEDVHPESWRVFSSFGKRYIITASPRIMVEPFVKTFLGADKVIGTELEVTKSG RATGFTIKPGVLVGEHKRAAISKEFGMKLPDLGLGDRETDHDFMSLCKEGYMVPRSKC DPLPRNKLLSPIIFHEGRLVQRPTPVAALLTFLWLPIGFILSLLRVYLNIPLPERIAR YNYKILGIKLIVKGNPPPAPKKGQSGVLFVCNHRTVLDPVVTAVALGRKISCVTYSIS KFTEIISPIRAVALSREREKDAANIKRLLEEGDLVICPEGTTCREPFLLRFSALFAEL TDRIVPVAINTKQTVFHGTTVRGHKLLDPYFVFMNPMPTYEITFLNQLPTELTCKGGK SAIEVANYIQRVLAGTLGFECTNLTRKDKYAMMAGTDGRVPSKKEKEQEKEKA" gene 1008574..1009377 /locus_tag="TCM_021738" /note="dbxref CacaoGD:Thecc1EG021738" mRNA 1008574..1009377 /locus_tag="TCM_021738" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.78 coverage" CDS 1008863..1009081 /locus_tag="TCM_021738" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07272.1" /translation="MKRSGFNPYLPESVLLNFSLAKTEEKMEKNSNFPESNYFTIRLF TTSWELWTHVGQLTPKTELDSALSVHPY" gene 1010698..1013585 /locus_tag="TCM_021739" /note="dbxref CacaoGD:Thecc1EG021739" mRNA join(1010698..1010997,1011503..1011595,1011713..1011794, 1011884..1011980,1012169..1012244,1012351..1012409, 1012552..1012674,1012884..1012941,1013062..1013147, 1013235..1013585) /locus_tag="TCM_021739" /product="RP non-ATPase subunit 8A" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033994001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042594t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019538001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01177t00001" CDS join(1010811..1010997,1011503..1011595,1011713..1011794, 1011884..1011980,1012169..1012244,1012351..1012409, 1012552..1012674,1012884..1012941,1013062..1013147, 1013235..1013306) /locus_tag="TCM_021739" /note="paralog of Thecc1EG042594t1" /codon_start=1 /product="RP non-ATPase subunit 8A" /protein_id="EOY07273.1" /db_xref="Phytozome:GSVIVT01019538001" /db_xref="TAIR:AT5G05780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O24412" /translation="MDVIKTQQISSRPIEKVIVHPLVLLSIVDNYNRVAKDTRKRVVG VLLGTSFKGTVDVTNSYAVPFEEDEKDPNIWFLDHNYHESMFSMFKRINAKEHVVGWY STGPKLRENDLDIHRLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQ KVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVTGKLTALKGLDARLREIRA YLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVNELIKAFAVKTNDMMLVIYLSSLIRS VIALHNLINNKMLNKEHEKAEDAKPATVPAASSS" mobile_element 1013883..1015024 /note="source:INTACT135F_F90_scaffold_2-int 12864 14016" /mobile_element_type="retrotransposon:LTR/Copia" gene 1015335..1019160 /locus_tag="TCM_021740" /note="dbxref CacaoGD:Thecc1EG021740" mRNA join(1015335..1015430,1015515..1015608,1015693..1015742, 1015835..1015884,1016176..1016284,1016805..1016865, 1016979..1017031,1017269..1017361,1017504..1017567, 1017991..1018098,1018331..1018534,1018738..1019160) /locus_tag="TCM_021740" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein" /inference="alignment:exonerate- protein:2:ricco:29969.m000270" /inference="similar to AA sequence:ricco:29969.m000270" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00341t00001" CDS join(1015404..1015430,1015515..1015608,1015693..1015742, 1015835..1015884,1016176..1016284,1016805..1016865, 1016979..1017031,1017269..1017361,1017504..1017567, 1017991..1018098,1018331..1018534,1018738..1018775) /locus_tag="TCM_021740" /note="dbxref ricco:29969.m000270" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein" /protein_id="EOY07274.1" /db_xref="TAIR:AT5G01230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C1MLW1" /translation="MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKR VVDLCAAPGSWSQVLSRKLYLPAKQSPDSKDDDLPLIVAIDLQPMAPIEGVIQVQGDI TNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIVTHVLKQG GKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYSPPEGFNPK DLHRLLEKVGSPSGVDDLDCSSGWLEGPNKVYIPFLACGDLSGYDSDRSYPLPKVADG TYQSLDPVQPPIAPPYKRALEMKKASSQGIRDLEKLSLDS" gene complement(1019374..1020439) /locus_tag="TCM_021741" /note="dbxref CacaoGD:Thecc1EG021741" mRNA complement(1019374..1020439) /locus_tag="TCM_021741" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s12020.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s12020.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g15010t00001" CDS complement(1019646..1020050) /locus_tag="TCM_021741" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07275.1" /db_xref="Phytozome:POPTR_0016s12020.1" /translation="MSRRTSKRVSFSPDVNERPTILLKHGGSTGRTRGNRRRVVAGIF TFRLVRSSRFSPARLLRRLGAKVARALRFVSMRRNSNSHKVSSSSSNLARSRSLAESI DSHRAEAIEDCIEFLNSSSSLSRSNSVSTCSC" mobile_element complement(1023151..1023314) /note="source:scaffold_4_CACTA_0483 6689 6851" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1023182..1023585 /note="source:MITE_PIF_Tourist_7 2 404" /mobile_element_type="transposon:TIR/MITE" gene 1027222..1031953 /locus_tag="TCM_021743" /note="dbxref CacaoGD:Thecc1EG021743" mRNA join(1027222..1027941,1028292..1028358,1028758..1028828, 1029467..1029584,1029706..1029779,1029888..1029943, 1030033..1030116,1030365..1030452,1030542..1030619, 1030823..1030879,1031180..1031953) /locus_tag="TCM_021743" /product="Sulfoquinovosyldiacylglycerol 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033998001" /inference="similar to AA sequence:Phytozome:POPTR_0006s09880.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03533t00001" CDS join(1027574..1027941,1028292..1028358,1028758..1028828, 1029467..1029584,1029706..1029779,1029888..1029943, 1030033..1030116,1030365..1030452,1030542..1030619, 1030823..1030879,1031180..1031675) /locus_tag="TCM_021743" /codon_start=1 /product="Sulfoquinovosyldiacylglycerol 2" /protein_id="EOY07276.1" /db_xref="Phytozome:POPTR_0006s09880.1" /db_xref="TAIR:AT5G01220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5ZBM2" /translation="MSPSTSLSKNPSLSPSFFFAYPSSYSSSSFTFHPPNCVKVLPFS SFSAIPISLVVKRSHFSEPVRWKSERKRRVVVVRASEMTITEVREEEEGGEESPPLID SENKNSGPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVMVVTTHEGVPQEFY GAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALFIAKL LCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLILKFLHRAADLTLVPSAAIGRDLQAAR VTAANKIRLWNKGVDSESFHPQYRSHEMRLRLSNGEPDRPLVIHVGRLGVEKSLDFLK SVMDRLPDARIAFIGDGPYREELEKMFTGMPAVFTGMLQGEELSQAYASGDVFVMPSE SETLGLVVLEAMSSGVPVVGARAGGIPDIIPAEQEGKTGFLFNPGDVDDCLSKLEALL RNKELRETIGKAAREEMEKYDWKAATKKIRNEQYNAAIWFWRKKRAQLLRPLQWLARR LFPSQEVNYR" gene complement(1032034..1034320) /locus_tag="TCM_021744" /note="dbxref CacaoGD:Thecc1EG021744" mRNA complement(1032034..1034320) /locus_tag="TCM_021744" /product="HXXXD-type acyl-transferase family protein" /inference="alignment:exonerate- protein:2:ricco:29969.m000273" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042595t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s11990.1" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.23 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc61t13; inference alignment:Newbler:10:TSA:cgbaP1_g11421t00001" CDS complement(1032818..1034227) /locus_tag="TCM_021744" /note="paralog of Thecc1EG042595t1" /codon_start=1 /product="HXXXD-type acyl-transferase family protein" /protein_id="EOY07277.1" /db_xref="Phytozome:POPTR_0016s11990.1" /db_xref="TAIR:AT5G01210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HCK4" /translation="MPSSSATLISKCTIFPDQKSNVKTLKLSVSDIPMLSCQYIQKGV LLTAPPISFDDLVVFLKQSISTTLSHFPPLAGRLMTDPDGHVHITCNDAGIEFLVVKS PKVSIHDILCPGDVPNCVKEFFTFDKTLSYSGHFKPLAAVQVTELVDGVFIGSTVNHA VTDGTSFWHFFNTFAEMTKGASKISKTPDFSRNTVFNSQAVLKFPPGGPTVTFAGNEP LRERIFHFTREAILKLKYRANYGRFLTKQTNSEGLGKLRNDSWKSVNGETNGLSNGKV KNSNDEISSFQSLCAQLWRSVTRARKLEITKTTTFRMAVNCRHRLDPKLEPYYFGNAI QSIPTFAPAGELLAKDLGWSADLLHKNVVAHDDGTVRGGVADWEKQPRLFPLGNSDGA SITMGSSPRFPMYDNDFGWGRPLAVRSGRANKFDGKISAFPGREGNGSVDLEVVLAPD TMAGIENDAEFMQYVSAIV" gene 1034865..1036896 /locus_tag="TCM_021745" /note="dbxref CacaoGD:Thecc1EG021745" mRNA join(1034865..1034975,1035559..1035686,1035854..1036896) /locus_tag="TCM_021745" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1138t3" CDS 1035895..1036122 /locus_tag="TCM_021745" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07278.1" /translation="MLIMIKGKEGIIKAKTSTEKMRSSMEIMNQESKNVTAEDHRKKK IVFPMCYNCRFASGKARNKPDRSTKLMSYRA" mobile_element 1036507..1041472 /note="source:INTACT4_F104_scaffold_5-int 1 4966" /mobile_element_type="retrotransposon:LTR/Copia" gene 1037736..1039374 /locus_tag="TCM_021747" /note="dbxref CacaoGD:Thecc1EG021747" mRNA 1037736..1039374 /locus_tag="TCM_021747" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045387t1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.41 coverage" CDS 1038167..1038520 /locus_tag="TCM_021747" /note="paralog of Thecc1EG045387t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07279.1" /translation="MVETQSGNKYISNVFFVFEANQNLLSVGQLSQSHYALLFKDKSC IIFNPKGEEVLTVKMRNKCFPIDCKHAEHKAYFNAINESELWHRRLSYVDNNSLQNMA SHQLVEGLPKITKPK" mobile_element complement(1042004..1042680) /note="source:CACAO_MITE5_scaffold_1 1 744" /mobile_element_type="transposon:TIR/MITE" mobile_element 1042577..1042693 /note="source:scaffold_4_CACTA_0483 6710 6840" /mobile_element_type="transposon:TIR/CACTA" gene complement(1043130..1046255) /locus_tag="TCM_021748" /note="dbxref CacaoGD:Thecc1EG021748" mRNA complement(join(1043130..1043456,1043539..1043600, 1044872..1044924,1045099..1045169,1045580..1045691, 1046049..1046255)) /locus_tag="TCM_021748" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.50 coverage" CDS complement(join(1043288..1043456,1043539..1043600, 1044872..1044924,1045099..1045169,1045580..1045691, 1046049..1046196)) /locus_tag="TCM_021748" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07280.1" /translation="MANGRKLRTEVMLSTAGGTVSHEFASQGSGHFGNNQMGTISLAA GPPLAFGPRKPAFRGDGPICLLGNDVANVIIRDVAKPRTKENSTSLSRRSSPVYILPI NTRYTPAKGNPRAGRVHRQVMEGTRKALTKRFSTRTNWLICSKYIGRGETARGDAIND GNCIKFRRTPFSNGWLNKPTDKLGSSGFNSGSLSVTLGGQDLSP" gene complement(1048333..1061189) /locus_tag="TCM_021750" /note="dbxref CacaoGD:Thecc1EG021750" mRNA complement(join(1048333..1048702,1052002..1052829, 1053219..1053800,1061054..1061189)) /locus_tag="TCM_021750" /product="Duplicated homeodomain-like superfamily protein" /inference="alignment:exonerate- protein:2:ricco:28288.m000014.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041672t1" /inference="similar to AA sequence:ricco:28288.m000014" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01353t00002" gene complement(1050246..1050921) /locus_tag="TCM_021751" /note="dbxref CacaoGD:Thecc1EG021751" mRNA complement(1050246..1050921) /locus_tag="TCM_021751" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.47 coverage" CDS complement(1050312..1050518) /locus_tag="TCM_021751" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07282.1" /translation="MKEEREMKAFPLQKTNNFLALLFHLAPFFCCSLLLVAGAVTKLL LLLLLQQPSWKRPGAHHFACTMHI" CDS complement(join(1052331..1052829,1053219..1053800, 1061054..1061061)) /locus_tag="TCM_021750" /note="dbxref ricco:28288.m000014; paralog of Thecc1EG041672t1" /codon_start=1 /product="Duplicated homeodomain-like superfamily protein" /protein_id="EOY07281.1" /db_xref="TAIR:AT2G38090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GXN7" /translation="MASHFSAFFYLGFSLSLNISFKEGEKQRSSSFFFFLYGQINCWQ LHNYKKKREMMNRGLEVLSPASYLQTSNWLFQESRGTKWTPEENKCFENALALYDKDT PDRWFMVAAMIPGKTVEDVIKQYRELEEDVSDIEAGLIPIPGYSSDSFTLEWVNDSQG FDGFRQYYTPGGKRGAGTRPSDQERKKGVPWTEEEHRQFLMGLKKYGKGDWRNISRNF VTTRTPTQVASHAQKYFIRQLNGGKDKRRSSIHDITTINVPDTPSSSPDHSKPLSPNN SAAVMQAQQQPKVAGVTKELLEWKQQNEGAAMIFNQTSGNAFLSPFCGISSYGPKVDE QNFLRGTLPRSQFGSYNTLFQMQSMQRQ" mobile_element complement(1057499..1057683) /note="source:CACAO_MITE101_scaffold_6 14 198" /mobile_element_type="transposon:TIR/MITE" gene complement(1061170..1067549) /locus_tag="TCM_021754" /note="dbxref CacaoGD:Thecc1EG021754" mRNA complement(join(1061170..1061597,1061705..1062631, 1062708..1062836,1062965..1063450,1063875..1064131)) /locus_tag="TCM_021754" /product="Laccase/Diphenol oxidase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s11950.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041673t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s11950.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc6220t8; inference alignment:Newbler:10:TSA:cgbaL_g03379t00001" mRNA complement(join(1061255..1061597,1061705..1062631, 1062708..1062836,1062965..1063209,1063299..1063450, 1063875..1064481,1067413..1067549)) /locus_tag="TCM_021754" /product="Laccase/Diphenol oxidase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s11950.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041673t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s11950.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03379t00001" CDS complement(join(1061467..1061597,1061705..1062631, 1062708..1062836,1062965..1063209,1063299..1063450, 1063875..1063961)) /locus_tag="TCM_021754" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG041673t1" /codon_start=1 /product="Laccase/Diphenol oxidase family protein isoform 1" /protein_id="EOY07283.1" /db_xref="Phytozome:POPTR_0016s11950.1" /db_xref="TAIR:AT2G38080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HL88" /translation="MGSWVRGLVLVACLFPVLVDCTVRNYKFDVVLKNKTRLCSSKPI VTVNGKFPGPTLYAREGDTVLVKVVNHVKYNVSIHWHGVRQLRTGWADGPAYITQCPI PTGQSYVYNFTITGQRGTLLWHAHILWLRSTVHGAIVILPKRGVPYPFPKPHKEVVVI LAEWWKSDTEAVINEALKSGLAPNVSDAHTINGHTGPVSSCPSQGGFTLPVENGKTYL LRLINAALNEELFFKIAGHKLTVVEVDATYVKPFKTKTVIIAPGQTTNVLVSADKSSG KYLVAASPFMDAPIAVDNLTATATLHYSGTLANTPTTLTSLPPKNATPVANNFINSLR ALNSKQYPALVPQSIDHNLFFTVGLGINPCPTCKAGNGSRAVASINNVTFVMPTTALL QAHFFNISGVFTTDFPANPPNVFNYSGTPPTNLQTTNGTKVFRLAYNSTVQLVLQDTG IIAPENHPIHLHGFNFFAVGRGLGNYNPKTDPQNFNLVDPVERNTIGVPSGGWVAIRF RADNPGVWFLHCHLEVHTTWGLKMAFLVDNGKGPNQSLLPPPSDLPKC" CDS complement(join(1061467..1061597,1061705..1062631, 1062708..1062836,1062965..1063250)) /locus_tag="TCM_021754" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG041673t1" /codon_start=1 /product="Laccase/Diphenol oxidase family protein isoform 2" /protein_id="EOY07284.1" /db_xref="Phytozome:POPTR_0016s11950.1" /db_xref="TAIR:AT2G38080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HL88" /translation="MDPCFHLIVHLICRHGVRQLRTGWADGPAYITQCPIPTGQSYVY NFTITGQRGTLLWHAHILWLRSTVHGAIVILPKRGVPYPFPKPHKEVVVILAEWWKSD TEAVINEALKSGLAPNVSDAHTINGHTGPVSSCPSQGGFTLPVENGKTYLLRLINAAL NEELFFKIAGHKLTVVEVDATYVKPFKTKTVIIAPGQTTNVLVSADKSSGKYLVAASP FMDAPIAVDNLTATATLHYSGTLANTPTTLTSLPPKNATPVANNFINSLRALNSKQYP ALVPQSIDHNLFFTVGLGINPCPTCKAGNGSRAVASINNVTFVMPTTALLQAHFFNIS GVFTTDFPANPPNVFNYSGTPPTNLQTTNGTKVFRLAYNSTVQLVLQDTGIIAPENHP IHLHGFNFFAVGRGLGNYNPKTDPQNFNLVDPVERNTIGVPSGGWVAIRFRADNPGVW FLHCHLEVHTTWGLKMAFLVDNGKGPNQSLLPPPSDLPKC" gene 1065225..1067255 /locus_tag="TCM_021755" /note="dbxref CacaoGD:Thecc1EG021755" mRNA join(1065225..1065599,1066481..1067255) /locus_tag="TCM_021755" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.50 coverage" CDS 1066906..1067136 /locus_tag="TCM_021755" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07285.1" /translation="MLSIKYPLQWAVASTDSHSYGGVPLTGKDGEGELNTANINPAFS VLEVIGIYLLYRICLDVIKILYIIYILFYNFT" gene 1067887..1070233 /locus_tag="TCM_021756" /note="dbxref CacaoGD:Thecc1EG021756" mRNA join(1067887..1068270,1068371..1068588,1068666..1069216, 1069472..1070233) /locus_tag="TCM_021756" /product="Peptide transporter 1" /inference="alignment:exonerate- protein:2:ricco:27847.m000125" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021757t2" /inference="similar to AA sequence:Phytozome:POPTR_0016s11940.1" /note="quality class is strong, express is medium, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g666t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g662t1" CDS join(1068165..1068270,1068371..1068588,1068666..1069216, 1069472..1070144) /locus_tag="TCM_021756" /note="paralog of Thecc1EG021757t2" /codon_start=1 /product="Peptide transporter 1" /protein_id="EOY07286.1" /db_xref="Phytozome:POPTR_0016s11940.1" /db_xref="TAIR:AT3G54140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HKW9" /translation="MAEEDIYTKDGTTDFRNKPAIRNKTGTWKACPYILGNDCCERLA YYGINTNLVNYLKFQLNQRNVAAVSNVTNWSGTCYVMPLIGAFLAEAYWGRYWTIASF SIIYVFGMTISTMSASIHGLKPACKNNVCHPTGLQTGVFFLGLYLIALGTAGIKPCVS SFGADQFDDSNEAVKKKKSSFFNWFYFSVNIGALVAGSVLVWIQTNVGWAWGFGIPAV AMAVAVASFFSGTRLYRNQKPGGSPLTRIFQVLVASFRKVRVEVPADKSLLYETADEE SAVKGSRKLDHTKQLSQMGTLFVLQGNTMDLHMGGSFEIPSASLSLFDTISVIFWVPV YDRFIVPLARKFTGHKNGFTQLQRIAIGLVISIFAMLAAGTLELVRLRQVKKHNYYEL KHMPMSIFWQVPQYFIIGCAEVFTFIGQLEFFYKQAPDAMRRLCSALSLTTAALGNYL STFLVNIVTDFSTRHGNPGWIPDNLNYGHLHYFFWLLAVLSLLNLGVYLVVARSYTYK KPVLSIN" gene 1072015..1076110 /locus_tag="TCM_021757" /note="dbxref CacaoGD:Thecc1EG021757" mRNA join(1072015..1072435,1073631..1073786,1073903..1074120, 1074296..1074846,1075032..1076110) /locus_tag="TCM_021757" /product="Peptide transporter 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:27847.m000125" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041674t1" /inference="similar to AA sequence:ricco:27847.m000125" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc985t8" mRNA join(1072277..1072435,1073635..1073786,1073903..1074120, 1074296..1074846,1075032..1076091) /locus_tag="TCM_021757" /product="Peptide transporter 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:27847.m000125" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041674t1" /inference="similar to AA sequence:ricco:27847.m000125" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc985t5; alternateUTRof:Thecc1EG021757t1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc985t8" CDS join(1073681..1073786,1073903..1074120,1074296..1074846, 1075032..1075863) /locus_tag="TCM_021757" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:27847.m000125; paralog of Thecc1EG041674t1" /codon_start=1 /product="Peptide transporter 1 isoform 1" /protein_id="EOY07287.1" /db_xref="TAIR:AT3G54140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HKW9" /translation="MGEDDIYTNDGTVDIHKNPANKSKTGNWKACRFILGNECCERLA YYGMGTNLVNYLEQRLNQGNVTASNNVTNWSGTCYITPLIGAFLADAYLGRYWTIAGF SIIYVLGMTLLTLSASVTGLKPSCNGDVCHPTASQSAVFFVALYMIALGTGGIKPCVS SFGADQFDETDDIERKKKSSFFNWFYFSINIGALVASSVLVWIQMNVGWGWGFGIPAA AMAIAVVFFFSGSRMYRLQRPGGSPLTRIFQVIVSSFRKLNVKVPADESLLYETADQE CSIQGSRKLEHTDKLKFFDKAAVETQTDYVKGSVNPWRLCTVTEVEELKSIIRLLPIW ASGIVFATVYSQMSTMFVLQGNTMDQHMGPHFKIPSASLSLFDTLSVIFWAPVYDRII VPWARKFTGKERGFTQLQRMGIGLVISIFSMVTAGILEVVRLKIVRKNNYYDLEYIPM SIFWQVPQYFLIGCAEVFTFIGQLEFFYDQAPDAMRSMCSALSLTTVALGNYLSTLLV TIVSKVTTRDGKLGWIPDNLNRGHLDYFYWLLAILSLVNFLVYLWIARWYTYKKATGR PY" CDS join(1073681..1073786,1073903..1074120,1074296..1074846, 1075032..1075863) /locus_tag="TCM_021757" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:27847.m000125; paralog of Thecc1EG041674t1" /codon_start=1 /product="Peptide transporter 1 isoform 1" /protein_id="EOY07288.1" /db_xref="TAIR:AT3G54140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HKW9" /translation="MGEDDIYTNDGTVDIHKNPANKSKTGNWKACRFILGNECCERLA YYGMGTNLVNYLEQRLNQGNVTASNNVTNWSGTCYITPLIGAFLADAYLGRYWTIAGF SIIYVLGMTLLTLSASVTGLKPSCNGDVCHPTASQSAVFFVALYMIALGTGGIKPCVS SFGADQFDETDDIERKKKSSFFNWFYFSINIGALVASSVLVWIQMNVGWGWGFGIPAA AMAIAVVFFFSGSRMYRLQRPGGSPLTRIFQVIVSSFRKLNVKVPADESLLYETADQE CSIQGSRKLEHTDKLKFFDKAAVETQTDYVKGSVNPWRLCTVTEVEELKSIIRLLPIW ASGIVFATVYSQMSTMFVLQGNTMDQHMGPHFKIPSASLSLFDTLSVIFWAPVYDRII VPWARKFTGKERGFTQLQRMGIGLVISIFSMVTAGILEVVRLKIVRKNNYYDLEYIPM SIFWQVPQYFLIGCAEVFTFIGQLEFFYDQAPDAMRSMCSALSLTTVALGNYLSTLLV TIVSKVTTRDGKLGWIPDNLNRGHLDYFYWLLAILSLVNFLVYLWIARWYTYKKATGR PY" gene complement(1076628..1081940) /locus_tag="TCM_021759" /note="dbxref CacaoGD:Thecc1EG021759" mRNA complement(join(1076628..1077733,1078082..1078148, 1078278..1080763,1081354..1081940)) /locus_tag="TCM_021759" /product="Pentatricopeptide repeat (PPR) superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Sb03g040130.1" /inference="similar to AA sequence:frave:gene18808" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:PASA:2:TSA:puevd3b021054t1a2; alternateUTRof:Thecc1EG021759t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1508t2" gene 1076716..1077911 /locus_tag="TCM_021758" /note="dbxref CacaoGD:Thecc1EG021758" mRNA join(1076716..1077267,1077363..1077911) /locus_tag="TCM_021758" /product="8-amino-7-oxononanoate synthase" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g14630.1" /inference="similar to AA sequence:ricco:27847.m000124" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g676t1" CDS join(1076932..1077267,1077363..1077797) /locus_tag="TCM_021758" /note="dbxref ricco:27847.m000124" /codon_start=1 /product="8-amino-7-oxononanoate synthase" /protein_id="EOY07291.1" /db_xref="TAIR:AT3G09050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SS82" /translation="MIALKAIQASFTPSQHALFHTRRFAYSTKSSILCLSKSNDSEPD SDPQSSEGDTRKQELLAQIAMLQAQKVRLTDYLDEKSAYLNQFGEEANAEFDKVGEDA LKGLEEAGERIMENIESQMHAFEESQEMNRQEIEKNEGQLAQFEGQIEKDRNEGLFFK NLTEKKPVDKAKAKQEAEKIKEITKEKAGSKVRRNIYLALIALLVIEIADSFISSSDW RKVAVLGAILVALFSQFTYEQTLLSEAEKSEKKDENKK" mRNA complement(join(1077702..1077733,1078082..1078148, 1078278..1080763,1081354..1081940)) /locus_tag="TCM_021759" /product="Pentatricopeptide repeat (PPR) superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Sb03g040130.1" /inference="similar to AA sequence:frave:gene18808" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1508t2" CDS complement(1078519..1080576) /locus_tag="TCM_021759" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene18808" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein isoform 1" /protein_id="EOY07289.1" /db_xref="TAIR:AT3G09060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SS81" /translation="MAEFPKNLSSKRVLKLLKSEKNVQSALALFDSATRHPGYTHSPD VFHHILRRLVDSRLVSHVSRIVQVIEAQKCNCPEDVPLTVIKAYAKNSMPEKALDSFQ RMKRIFGCEPGIRSYNTLLNAFAESNRWEQAESFFKYFETVGVKPNLQTYNILIKIAC RKEHFEKAKRLLDWIWKMGFHPNVQSYGTLINGLVKGGKLVVAMEVFDEMVNRKVTPD VMCYNLLIDGFFKKRDFVMANEVWERLLEDSSAYPNSVTYNVMINGLCKCGKFDECLR LWERMKKNEREKDLFTYSSMIHGLCEAGKVDGAERVYKEMVESGALVDVVTYNAMLNG YCKAGKFDECFELWKQMEKDGCINVVSFDILIRGLLENGKVDEAISTWRILPERGCNA EASTYAVLIHGLCKNGYLKKALEILKEAELGGSKLDSFGYSSIIDGFCKQGKLGEVAG LISQMVKCGCKLNPYICNPMIHGFIQASRLDDAVQFFKGMDSMGYSPTVASYNILISG LCKAERFREAYCFLKEMLEKGWKPDMITYSSLMKGLFQGKNVDMALSLWHHVLDKAFK PDVIMHNIIIHGLCSVGKVEDALQLYSKMRRRNCAPNLVTHNTIMEGLYKAGEYEKAS EIWTRISTDGLQPDIISYNITLKGLCSCGKIQDAVGFLEDALARGILPTVITWNILVR AVL" CDS complement(1078519..1080576) /locus_tag="TCM_021759" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene18808" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein isoform 1" /protein_id="EOY07290.1" /db_xref="TAIR:AT3G09060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SS81" /translation="MAEFPKNLSSKRVLKLLKSEKNVQSALALFDSATRHPGYTHSPD VFHHILRRLVDSRLVSHVSRIVQVIEAQKCNCPEDVPLTVIKAYAKNSMPEKALDSFQ RMKRIFGCEPGIRSYNTLLNAFAESNRWEQAESFFKYFETVGVKPNLQTYNILIKIAC RKEHFEKAKRLLDWIWKMGFHPNVQSYGTLINGLVKGGKLVVAMEVFDEMVNRKVTPD VMCYNLLIDGFFKKRDFVMANEVWERLLEDSSAYPNSVTYNVMINGLCKCGKFDECLR LWERMKKNEREKDLFTYSSMIHGLCEAGKVDGAERVYKEMVESGALVDVVTYNAMLNG YCKAGKFDECFELWKQMEKDGCINVVSFDILIRGLLENGKVDEAISTWRILPERGCNA EASTYAVLIHGLCKNGYLKKALEILKEAELGGSKLDSFGYSSIIDGFCKQGKLGEVAG LISQMVKCGCKLNPYICNPMIHGFIQASRLDDAVQFFKGMDSMGYSPTVASYNILISG LCKAERFREAYCFLKEMLEKGWKPDMITYSSLMKGLFQGKNVDMALSLWHHVLDKAFK PDVIMHNIIIHGLCSVGKVEDALQLYSKMRRRNCAPNLVTHNTIMEGLYKAGEYEKAS EIWTRISTDGLQPDIISYNITLKGLCSCGKIQDAVGFLEDALARGILPTVITWNILVR AVL" gene complement(1082254..1085270) /locus_tag="TCM_021761" /note="dbxref CacaoGD:Thecc1EG021761" mRNA complement(join(1082254..1084914,1084979..1085270)) /locus_tag="TCM_021761" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29068.m000019" /inference="similar to AA sequence:Phytozome:POPTR_0016s11900.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1347t1" CDS complement(1082576..1084603) /locus_tag="TCM_021761" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07292.1" /db_xref="Phytozome:POPTR_0016s11900.1" /db_xref="TAIR:AT3G09070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HCJ6" /translation="MNPNVEPPPPPPALAPPPQPPQPHRPSTSCDRHPEEHFTGFCPS CLCERLAVLEPSSSAAASSSSSSRKPPIAATTSTATAALKAIFKPSGGGGTRPGFFPE LRRTKSFSASKNEGFSGVFEPQRKSCDVRVRNTLWSLFYQDDERNPYKKEAAGNGRSS EIVEVEARNLGSSSSVVQGPVFESKEEDQTESETDHEDDIEIIEEQQPNVAVTTGSLI EEKVEEIVEEYEKELRQEEELKPMKDHIDLDSQTKKASGRDFKEIAGSFWSAASVFSK KLQKWRQKQKLKKRSNGGGSARLPVEKPIGRQYRETQSEIADYGFGRRSCDTDPRFSL DAGRMSFDAARISFDDPRYSFDEPRASWDGYLIGRTFPRMPTMVSVVEDAPVHHVMRS DTQIPVEDPPAMNSINEDESVPGGSAQTRDYYSDSSSRRRKSLDRSNSIRKTAAAVVA EIDEMKSVSNAKVSPATVDYIHGPKLVPDRDSRDSNSNSLRDDYSETFEIGFRDSASV IGNGERKGSSKKSRRWSKAWNIWGFIHRRSVNKDEDEDRYSRANGVERSYSESWPELR GERNGDVRGGFNPKVLRSNSSVSWRNSSSFGGSFGGARKNHADTNGHSKKKRDEFGLE RNRSARYSPNNIENGLLRFYLTPLRSSRRGGSGKSRASHAHSIARSVLRLY" mobile_element complement(1087148..1087220) /note="source:CACAO_MITE111_scaffold_7 141 214" /mobile_element_type="transposon:TIR/MITE" gene 1088656..1090014 /locus_tag="TCM_021762" /note="dbxref CacaoGD:Thecc1EG021762" mRNA 1088656..1090014 /locus_tag="TCM_021762" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.23 coverage" misc_feature complement(join(1088958..1090137,1091713..1091764)) /locus_tag="TCM_021764" /note="Gene fragment of Thecc1EG021764t1; dbxref gnl|CacaoGD|Thecc1EG021764t1; quality class is mediumpartial-partof is thecc1eg021764t1, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1337t9; dbxref CacaoGD:Thecc1EG021763t1" CDS 1089193..1089504 /locus_tag="TCM_021762" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07293.1" /translation="MIPIKQFPYLYLCSTIETFHPIVFKLAFISIRVCEFMYVFLFAS IFLFKTVIVQIISPHPQILHVHTITLLDYLSLSNQSFYLVYLFVPNMFISLTTTFFFF C" gene complement(1090075..1100371) /locus_tag="TCM_021764" /note="dbxref CacaoGD:Thecc1EG021764" mRNA complement(join(1090075..1090137,1091713..1091764, 1092356..1092547,1092652..1093124,1093304..1093510, 1093841..1093935,1094079..1094150,1094363..1094481, 1094570..1094763,1095227..1095583,1095731..1095892, 1095977..1096063,1096288..1096426,1096705..1096806, 1096906..1097048,1097188..1097318,1097574..1097823, 1097929..1097984,1098078..1098318,1098625..1098845, 1098936..1099301,1099416..1099524,1099819..1100037, 1100131..1100371)) /locus_tag="TCM_021764" /product="Transducin/WD40 repeat-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s09770.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s09770.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1337t4" CDS complement(join(1092654..1093124,1093304..1093510, 1093841..1093935,1094079..1094150,1094363..1094481, 1094570..1094763,1095227..1095583,1095731..1095892, 1095977..1096063,1096288..1096426,1096705..1096806, 1096906..1097048,1097188..1097318,1097574..1097823, 1097929..1097984,1098078..1098318,1098625..1098845, 1098936..1099301,1099416..1099524,1099819..1100037, 1100131..1100178)) /locus_tag="TCM_021764" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein, putative" /protein_id="EOY07294.1" /db_xref="Phytozome:POPTR_0006s09770.1" /db_xref="TAIR:AT3G09080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HCJ4" /translation="MKTNRKLKKSDPASSKLVLKEIIGLTAKNENGLASSVTASTCVY VAGCVAVVYDVEKGTQSHLMLSHRMPKPLSCVAVSRDGRYVAAGESGHQPSVLVWDCA TLAFISELKGHLYGVECIAFSSDGEHLVSVGGYIYLWDWRSGILVTKLKASSSCSAVT SVTFSSDSKYIVTAGKKHLKFWAVGASPRTRMNKGTISLSIHAKPINLGPQKGSSFVS VASAIWTEGRVVNCDQVDELFPIYALTDAGVLCLIDSELSLRNSVDLKVCLTSNPMLF VLDISESAHQGIWECFLRSNILNRLSRWIQEGPCWSHSHCSQNAEVEKGFALSASSKL IACACSNGLVQLFKVEDLRYVGSLLYTKAKTCRGEIDHFCPKFSEKNLQSAPTLPDAV ACQFISEKLVVVYGDHSLHIWDFHEENEATRSFVLNSHSACIWDIKNLCCENMHDPSL MCAAMGCSGGVSFATCSADGTIRLWDLVLQPNLLGDTVDSNSLINEPVGAMNIDTTFG NQGFRSMAVSSDGKYMAVGDCEGNLHIYDLHNSDYTCIKDSHDAEILSLSFSLSSTKD ADSGGDMDNHYLLASGGRDRIIHLYDVKRNFNLIESIDDHSAAVTSVKLASNGCKILS CSADRSLVFRDVSLTESRCKISRRHHQMASHGTVYDMSVDPVMEVVVTVGQDKKINTF DIVSGKLIRSVKHNKDFGDPIKVTMDPSGSYLVCSFSNKSICVYDFISGEMIAQAVGH GEVVTGVIFLPDCKHIVSVGGDGCIFVWKLPARLAFRMLQKVKETSVSLSPRTPALPV GFSEAIICGEGDLPCRIDFKDVLPTESSSQLKQRANYHGLDTQETYAFKLSISRLPKW AQDKVTSSDFVQRNLEFTSPQQKEVEPKILSTLISNGGAYASLCHEHQTPFGRGSGGR NSCLSSLCRSSSNVSKSQSSASPEEFASSSATEDHWFTVYNVRLDLLNSPEVQNPNHL KMPVSSPKLVQGLAEIPSESEQSLGYRGHFVDDEHDAMVINAFHMKSEDSDLFKEHFG NLSAILKVKKRQSSTKRRYSSQYFVRRDYLVGCKKLLDTSMQDVGAFNQEKESATNVT LEEDPLFKEQQVLGFINQDLNSTECLLTPSCALSRDEKDKEDSSTIEEAMAQKQCVDG GSEPGEKITACREALRSLDTAAENVFQLFAKLGTECSLEEFSSGSGAQLRNEAIELLP KITEKVNAVAEWVQNNRSSTGSSTSRVEGSAFEPVLGKLAESLSQRVVEIVKKNLSTV " mobile_element 1101835..1102539 /note="source:CACAO_on_E373_scaffold_1 1 726" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 1102923..1109714 /locus_tag="TCM_021765" /note="dbxref CacaoGD:Thecc1EG021765" mRNA join(1102923..1103443,1103948..1104174,1104386..1104734, 1104831..1104875,1105155..1105301,1105574..1105711, 1105844..1105877,1106013..1106697,1107789..1108296, 1109371..1109714) /locus_tag="TCM_021765" /product="Phosphate transporter 4,2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400035286" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041681t2" /inference="similar to AA sequence:ricco:27798.m000580" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc728t2" CDS join(1103006..1103443,1103948..1104174,1104386..1104734, 1104831..1104875,1105155..1105301,1105574..1105711, 1105844..1105877,1106013..1106182) /locus_tag="TCM_021765" /note="dbxref ricco:27798.m000580; paralog of Thecc1EG041681t2" /codon_start=1 /product="Phosphate transporter 4,2" /protein_id="EOY07295.1" /db_xref="TAIR:AT2G38060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7XJR2" /translation="MAAGSLLLHSSSSSSTKPSCFLSRYQSSLIESRTTQLGLRGRVL GKQVKWESLSLSSRGRDHALKKKEKGGGGGGVVVRCTAEGIERRVLIGETASSVRVPE RFKVVALMACVMCLCNADRVVMSVAIVPLADKLNWSNSFLGVVQSSFLWGYIFSSAIG GALVDKYGGKKVLAWGVALWSLATLLTPWAANHSTIALLAIRAFFGLAEGVALPSMST LLSRWFPGDERASAVGVSMAGFHLGNVVGLLLTPILLSSIGISGPFILFSSLGLLWLS SWVYKVTSDPRESPFVSKSELRLIQTGKTHPPVSTGESPPIRLILSKLPTWAIIFANV TNNWGYFVLLSWMPVYFRTVFNVNLKQAAWFSAVPWGTMAVSGYIAGAVSDSLIKEGY SITLVRKIMQSIGFIGPGVSLLCLNFAKSPAVAALFITVALSFSSFSQAGFLLNMQDI APQYAGFVHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLSVTAGLYFITTIFWNLF ATGERVF" mobile_element 1109993..1110146 /note="source:CACAO_PIF_E465_scaffold_115 1174 1327" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(1111560..1112059) /note="source:CACAO_Again_on_S_E233_scaffold_7 1 536" /mobile_element_type="transposon:TIR/hAT" gene complement(1112292..1118883) /locus_tag="TCM_021766" /note="dbxref CacaoGD:Thecc1EG021766" mRNA complement(join(1112292..1112883,1113008..1113190, 1113280..1113397,1113496..1113779,1114154..1114335, 1114936..1115192,1115404..1115474,1115592..1116091, 1116467..1116627,1116739..1116856,1116976..1117058, 1117232..1117342,1117437..1117749,1117872..1118371)) /locus_tag="TCM_021766" /product="Defective in exine formation protein (DEX1) isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034014001" /inference="similar to AA sequence:Phytozome:POPTR_0006s09730.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc163t42" mRNA complement(join(1112439..1112883,1113008..1113190, 1113280..1113397,1113496..1113779,1114154..1114335, 1114936..1115192,1115404..1115474,1115592..1116091, 1116467..1116627,1116739..1116856,1116976..1117058, 1117232..1117342,1117437..1118875)) /locus_tag="TCM_021766" /product="Defective in exine formation protein (DEX1) isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034014001" /inference="similar to AA sequence:Phytozome:POPTR_0006s09730.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc219t19; alternateUTRof:Thecc1EG021766t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc163t42" CDS complement(join(1112566..1112883,1113008..1113190, 1113280..1113397,1113496..1113779,1114154..1114335, 1114936..1115192,1115404..1115474,1115592..1116091, 1116467..1116627,1116739..1116856,1116976..1117058, 1117232..1117342,1117437..1117573)) /locus_tag="TCM_021766" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Defective in exine formation protein (DEX1) isoform 1" /protein_id="EOY07296.1" /db_xref="Phytozome:POPTR_0006s09730.1" /db_xref="TAIR:AT3G09090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SS78" /translation="MKSFEIRVLWILFLLISHSSFSHGEDSKNKFRQRGATDDELGYP EMDEDALLNTRCPRNLELRWQTEVSSSIYATPLIADINSDGKLDIVVPSFVHYLEVLE GSDGDKMPGWPAFHQSTVHSSPLLYDIDKDGVREIALATYNGEVIFFRVSGYMMTDKL EVPRRRVRKDWYVGLHPDPVDRSHPDVQDDLLVQEAAKMNAMNQTNGSILESNLTGSK SIENHSSKVNLSNAEDGKKTNGSQIEDTIKLPTIVDNTSVNTESVGNNEAHNRASAGR RLLEDNNSKGSQEGSSDSKDKVQEATVENEQGLEVDADSSFELFRDSDELADEYSYDY DDYVDESMWGDEEWTEGQHEKMEDYVNIDSHILSTPVIADIDNDGVSEMIVAVSYFFD HEYYDNPEHMKELGGIEIGKYVAGGIVVFNLDTKQVKWIKDLDLSTDTSNFRAYIYSS LSVVDLDGDGNLDILVGTSFGLFYVLDHHGNVRQKFPLEMAEIQSAVVAADINDDGKI ELVTTDTHGNVAAWTAQGEEIWEVHLKSLVPQGPAVGDVDGDGHTDLVIPTLSGNIYV LSGKDGSVVRPYPYRTHGRVMNQVLLVDLNKRGEKSKGLTIVTTSFDGYLYLIDGPTS CADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAPHHPLKAWRSTSQG RNNFAYRYNREGVYVTHSSRAFRDEEGKSFWVEIEIVDKHRYPSGFQAPYNVTTTLLV PGNYQGERRIKQSQIFDRPGKYRIKLPTVAVRTTGTVVVEMVDRNGLHFSDDFSLTFH MYYYKLLKWLLVIPMLGMFGVLVILRPQDAMPLPSFSRNTDL" CDS complement(join(1112566..1112883,1113008..1113190, 1113280..1113397,1113496..1113779,1114154..1114335, 1114936..1115192,1115404..1115474,1115592..1116091, 1116467..1116627,1116739..1116856,1116976..1117058, 1117232..1117342,1117437..1117573)) /locus_tag="TCM_021766" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Defective in exine formation protein (DEX1) isoform 1" /protein_id="EOY07297.1" /db_xref="Phytozome:POPTR_0006s09730.1" /db_xref="TAIR:AT3G09090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SS78" /translation="MKSFEIRVLWILFLLISHSSFSHGEDSKNKFRQRGATDDELGYP EMDEDALLNTRCPRNLELRWQTEVSSSIYATPLIADINSDGKLDIVVPSFVHYLEVLE GSDGDKMPGWPAFHQSTVHSSPLLYDIDKDGVREIALATYNGEVIFFRVSGYMMTDKL EVPRRRVRKDWYVGLHPDPVDRSHPDVQDDLLVQEAAKMNAMNQTNGSILESNLTGSK SIENHSSKVNLSNAEDGKKTNGSQIEDTIKLPTIVDNTSVNTESVGNNEAHNRASAGR RLLEDNNSKGSQEGSSDSKDKVQEATVENEQGLEVDADSSFELFRDSDELADEYSYDY DDYVDESMWGDEEWTEGQHEKMEDYVNIDSHILSTPVIADIDNDGVSEMIVAVSYFFD HEYYDNPEHMKELGGIEIGKYVAGGIVVFNLDTKQVKWIKDLDLSTDTSNFRAYIYSS LSVVDLDGDGNLDILVGTSFGLFYVLDHHGNVRQKFPLEMAEIQSAVVAADINDDGKI ELVTTDTHGNVAAWTAQGEEIWEVHLKSLVPQGPAVGDVDGDGHTDLVIPTLSGNIYV LSGKDGSVVRPYPYRTHGRVMNQVLLVDLNKRGEKSKGLTIVTTSFDGYLYLIDGPTS CADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAPHHPLKAWRSTSQG RNNFAYRYNREGVYVTHSSRAFRDEEGKSFWVEIEIVDKHRYPSGFQAPYNVTTTLLV PGNYQGERRIKQSQIFDRPGKYRIKLPTVAVRTTGTVVVEMVDRNGLHFSDDFSLTFH MYYYKLLKWLLVIPMLGMFGVLVILRPQDAMPLPSFSRNTDL" mRNA complement(join(1112860..1113190,1113280..1113397, 1113496..1113779,1114154..1114335,1114936..1115192, 1115404..1115474,1115592..1116091,1116467..1116627, 1116739..1116856,1116976..1117058,1117232..1117342, 1117437..1118883)) /locus_tag="TCM_021766" /product="Defective in exine formation protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034014001" /inference="similar to AA sequence:Phytozome:POPTR_0006s09730.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc222t17; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc163t42" CDS complement(join(1112894..1113190,1113280..1113397, 1113496..1113779,1114154..1114335,1114936..1115192, 1115404..1115474,1115592..1116091,1116467..1116627, 1116739..1116856,1116976..1117058,1117232..1117342, 1117437..1117573)) /locus_tag="TCM_021766" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Defective in exine formation protein isoform 3" /protein_id="EOY07298.1" /db_xref="Phytozome:POPTR_0006s09730.1" /db_xref="TAIR:AT3G09090.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SS78" /translation="MKSFEIRVLWILFLLISHSSFSHGEDSKNKFRQRGATDDELGYP EMDEDALLNTRCPRNLELRWQTEVSSSIYATPLIADINSDGKLDIVVPSFVHYLEVLE GSDGDKMPGWPAFHQSTVHSSPLLYDIDKDGVREIALATYNGEVIFFRVSGYMMTDKL EVPRRRVRKDWYVGLHPDPVDRSHPDVQDDLLVQEAAKMNAMNQTNGSILESNLTGSK SIENHSSKVNLSNAEDGKKTNGSQIEDTIKLPTIVDNTSVNTESVGNNEAHNRASAGR RLLEDNNSKGSQEGSSDSKDKVQEATVENEQGLEVDADSSFELFRDSDELADEYSYDY DDYVDESMWGDEEWTEGQHEKMEDYVNIDSHILSTPVIADIDNDGVSEMIVAVSYFFD HEYYDNPEHMKELGGIEIGKYVAGGIVVFNLDTKQVKWIKDLDLSTDTSNFRAYIYSS LSVVDLDGDGNLDILVGTSFGLFYVLDHHGNVRQKFPLEMAEIQSAVVAADINDDGKI ELVTTDTHGNVAAWTAQGEEIWEVHLKSLVPQGPAVGDVDGDGHTDLVIPTLSGNIYV LSGKDGSVVRPYPYRTHGRVMNQVLLVDLNKRGEKSKGLTIVTTSFDGYLYLIDGPTS CADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAPHHPLKAWRSTSQG RNNFAYRYNREGVYVTHSSRAFRDEEGKSFWVEIEIVDKHRYPSGFQAPYNVTVSHHV HAKITTAKSNSNVSFLSPFIFKYCQLFHSLIC" mobile_element 1117413..1117465 /note="source:INTACT349_F203_scaffold_6-int 9553 9603" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(1118444..1128026) /locus_tag="TCM_021767" /note="dbxref CacaoGD:Thecc1EG021767" mRNA complement(join(1118444..1119573,1119663..1119796, 1119889..1119973,1120077..1120166,1120446..1120544, 1120635..1120757,1121285..1121422,1121517..1121733, 1122611..1122660,1123613..1123732,1124202..1124405, 1124494..1124622,1124997..1125059,1125139..1125222, 1125646..1125797,1126313..1126451,1127083..1127243, 1127645..1128004)) /locus_tag="TCM_021767" /product="MRNA capping enzyme family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034015001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039824t1" /inference="similar to AA sequence:Phytozome:Glyma01g27240.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g923t2; alternateUTRof:Thecc1EG021767t1; inference alignment:Newbler:10:TSA:cgbaB_g00137t00002; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc219t20_C2" mRNA complement(join(1118454..1118697,1118781..1119573, 1119663..1119796,1119889..1119973,1120077..1120166, 1120446..1120544,1120635..1120757,1121285..1121422, 1121571..1121733,1122611..1122660,1123613..1123732, 1124202..1124405,1124494..1124622,1124997..1125059, 1125139..1125222,1125646..1125797,1126313..1126451, 1127083..1127243,1127645..1128026)) /locus_tag="TCM_021767" /product="MRNA capping enzyme family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034015001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039824t1" /inference="similar to AA sequence:Phytozome:Glyma01g27240.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:PASA:2:TSA:puevd3b021062t1a2; inference alignment:Newbler:10:TSA:cgbaB_g00137t00002" mRNA complement(join(1118856..1119340,1119664..1119796, 1119889..1119973,1120077..1120166,1120446..1120544, 1120635..1120757,1121285..1121422,1121544..1121733, 1122611..1122660,1123613..1123732,1124202..1124405, 1124494..1124622,1124997..1125059,1125139..1125222, 1125646..1125797,1126313..1126451,1127083..1127243, 1127641..1127930)) /locus_tag="TCM_021767" /product="MRNA capping enzyme family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034015001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039824t1" /inference="similar to AA sequence:Phytozome:Glyma01g27240.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc219t20_C2; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc219t20_C2; inference alignment:Newbler:10:TSA:cgbaB_g00137t00002" mRNA complement(join(1118866..1119573,1119663..1119796, 1119889..1119973,1120077..1120166,1120446..1120544, 1120635..1120757,1121285..1121422,1121517..1121733, 1122611..1122660,1123613..1123732,1124202..1124405, 1124494..1124622,1124997..1125059,1125139..1125222, 1125646..1125797,1126313..1126451,1127083..1127243, 1127645..1128018)) /locus_tag="TCM_021767" /product="MRNA capping enzyme family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034015001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039824t1" /inference="similar to AA sequence:Phytozome:Glyma01g27240.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00137t00002; inference alignment:Newbler:10:TSA:cgbaB_g00137t00002" CDS complement(join(1119325..1119340,1119664..1119796, 1119889..1119973,1120077..1120166,1120446..1120544, 1120635..1120757,1121285..1121422,1121544..1121733, 1122611..1122660,1123613..1123732,1124202..1124405, 1124494..1124622,1124997..1125059,1125139..1125222, 1125646..1125797,1126313..1126451,1127083..1127211)) /locus_tag="TCM_021767" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG039824t1" /codon_start=1 /product="MRNA capping enzyme family protein isoform 4" /protein_id="EOY07302.1" /db_xref="Phytozome:Glyma01g27240.1" /db_xref="TAIR:AT3G09100.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IYM6" /translation="MIASMDLNASPLPEDDEETYERHIEHYSAPEDHVESAVEISRRE REERRKRLRRDRPDDRPVHVSQPPVHDHFYQNRNPRAYDRSRIPPGWLDCPSVGQEIG CIIPSKVPLGESYNDCVPPGKRYSFKQVIHQQRVLGRKLGLVIDLTNTFRYYQTTDLK REGIKHVKIQCRGRDAVPDNGSVNTFVYEVSQFLLRQKSKKHILVHCTHGHNRTGYMI IHYLMRSQSMSVTQAIKIFSDARPPGIYKPDYIDALYAFYHERRPEMVVCPPTPEWKR SSDLDLNGEAVADDDDDGGPTALHENHETDVMLTNDDILGDEIPHDQQESLRLFCYQM LKLNPGVRGHSQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITVDGCYLID RSFNFRRVQMRFPSKHPPEVCPSKHPPEGIGDRTHHFTLLDGEMVIDTMPDSQKQERR YLIYDMMALNHVPIIERPFCERWKMLEKEVIEPRNYERQNIYQSRNPYYRYDLEPFRV RRKDFWLLSTVNKVLKEFIPRLSHEADGLIFQGWDDPYVPRTHEGLLKWKYAQLNSVD FLFEVGSDDRELLFLYERGRKKLMEGTTVEFRGVSDPPPSFSGKIIECSWDPDQHVWI YMRIRTDKSTPNDFNTFKKGVFW" CDS complement(join(1119430..1119573,1119663..1119796, 1119889..1119973,1120077..1120166,1120446..1120544, 1120635..1120757,1121285..1121422,1121571..1121733, 1122611..1122660,1123613..1123732,1124202..1124405, 1124494..1124622,1124997..1125059,1125139..1125222, 1125646..1125797,1126313..1126451,1127083..1127211)) /locus_tag="TCM_021767" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG039824t1" /codon_start=1 /product="MRNA capping enzyme family protein isoform 3" /protein_id="EOY07301.1" /db_xref="Phytozome:Glyma01g27240.1" /db_xref="TAIR:AT3G09100.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IYM6" /translation="MIASMDLNASPLPEDDEETYERHIEHYSAPEDHVESAVEISRRE REERRKRLRRDRPDDRPVHVSQPPVHDHFYQNRNPRAYDRSRIPPGWLDCPSVGQEIG CIIPSKVPLGESYNDCVPPGKRYSFKQVIHQQRVLGRKLGLVIDLTNTFRYYQTTDLK REGIKHVKIQCRGRDAVPDNGSVNTFVYEVSQFLLRQKSKKHILVHCTHGHNRTGYMI IHYLMRSQSMSVTQAIKIFSDARPPGIYKPDYIDALYAFYHERRPEMVVCPPTPEWKR SSDLDLNGEAVADDDDDGGPTALHENHETDVMLTNDDILGDEIPHDQQESLRLFCYQM LKLNPGVRGHSQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITVDGCYLID RSFNFRRVQMRFPSKHPPEGIGDRTHHFTLLDGEMVIDTMPDSQKQERRYLIYDMMAL NHVPIIERPFCERWKMLEKEVIEPRNYERQNIYQSRNPYYRYDLEPFRVRRKDFWLLS TVNKVLKEFIPRLSHEADGLIFQGWDDPYVPRTHEGLLKWKYAQLNSVDFLFEVGSDD RELLFLYERGRKKLMEGTTVEFRGVSDPPPSFSGKIIECSWDPDQHVWIYMRIRTDKS TPNDFNTFKKVMRSIKDNITEEILLNEINEIIRLPMYADRIKIDSKAHLHTNSARRK" CDS complement(join(1119430..1119573,1119663..1119796, 1119889..1119973,1120077..1120166,1120446..1120544, 1120635..1120757,1121285..1121422,1121517..1121733, 1122611..1122660,1123613..1123732,1124202..1124405, 1124494..1124622,1124997..1125059,1125139..1125222, 1125646..1125797,1126313..1126451,1127083..1127211)) /locus_tag="TCM_021767" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG039824t1" /codon_start=1 /product="MRNA capping enzyme family protein isoform 1" /protein_id="EOY07299.1" /db_xref="Phytozome:Glyma01g27240.1" /db_xref="TAIR:AT3G09100.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IYM6" /translation="MIASMDLNASPLPEDDEETYERHIEHYSAPEDHVESAVEISRRE REERRKRLRRDRPDDRPVHVSQPPVHDHFYQNRNPRAYDRSRIPPGWLDCPSVGQEIG CIIPSKVPLGESYNDCVPPGKRYSFKQVIHQQRVLGRKLGLVIDLTNTFRYYQTTDLK REGIKHVKIQCRGRDAVPDNGSVNTFVYEVSQFLLRQKSKKHILVHCTHGHNRTGYMI IHYLMRSQSMSVTQAIKIFSDARPPGIYKPDYIDALYAFYHERRPEMVVCPPTPEWKR SSDLDLNGEAVADDDDDGGPTALHENHETDVMLTNDDILGDEIPHDQQESLRLFCYQM LKLNPGVRGHSQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITVDGCYLID RSFNFRRVQMRFPSKHPPEVCPSKHPPEVCPSKHPPEGIGDRTHHFTLLDGEMVIDTM PDSQKQERRYLIYDMMALNHVPIIERPFCERWKMLEKEVIEPRNYERQNIYQSRNPYY RYDLEPFRVRRKDFWLLSTVNKVLKEFIPRLSHEADGLIFQGWDDPYVPRTHEGLLKW KYAQLNSVDFLFEVGSDDRELLFLYERGRKKLMEGTTVEFRGVSDPPPSFSGKIIECS WDPDQHVWIYMRIRTDKSTPNDFNTFKKVMRSIKDNITEEILLNEINEIIRLPMYADR IKIDSKAHLHTNSARRK" CDS complement(join(1119430..1119573,1119663..1119796, 1119889..1119973,1120077..1120166,1120446..1120544, 1120635..1120757,1121285..1121422,1121517..1121733, 1122611..1122660,1123613..1123732,1124202..1124405, 1124494..1124622,1124997..1125059,1125139..1125222, 1125646..1125797,1126313..1126451,1127083..1127211)) /locus_tag="TCM_021767" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG039824t1" /codon_start=1 /product="MRNA capping enzyme family protein isoform 1" /protein_id="EOY07300.1" /db_xref="Phytozome:Glyma01g27240.1" /db_xref="TAIR:AT3G09100.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IYM6" /translation="MIASMDLNASPLPEDDEETYERHIEHYSAPEDHVESAVEISRRE REERRKRLRRDRPDDRPVHVSQPPVHDHFYQNRNPRAYDRSRIPPGWLDCPSVGQEIG CIIPSKVPLGESYNDCVPPGKRYSFKQVIHQQRVLGRKLGLVIDLTNTFRYYQTTDLK REGIKHVKIQCRGRDAVPDNGSVNTFVYEVSQFLLRQKSKKHILVHCTHGHNRTGYMI IHYLMRSQSMSVTQAIKIFSDARPPGIYKPDYIDALYAFYHERRPEMVVCPPTPEWKR SSDLDLNGEAVADDDDDGGPTALHENHETDVMLTNDDILGDEIPHDQQESLRLFCYQM LKLNPGVRGHSQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITVDGCYLID RSFNFRRVQMRFPSKHPPEVCPSKHPPEVCPSKHPPEGIGDRTHHFTLLDGEMVIDTM PDSQKQERRYLIYDMMALNHVPIIERPFCERWKMLEKEVIEPRNYERQNIYQSRNPYY RYDLEPFRVRRKDFWLLSTVNKVLKEFIPRLSHEADGLIFQGWDDPYVPRTHEGLLKW KYAQLNSVDFLFEVGSDDRELLFLYERGRKKLMEGTTVEFRGVSDPPPSFSGKIIECS WDPDQHVWIYMRIRTDKSTPNDFNTFKKVMRSIKDNITEEILLNEINEIIRLPMYADR IKIDSKAHLHTNSARRK" gene 1135115..1138511 /locus_tag="TCM_021769" /note="dbxref CacaoGD:Thecc1EG021769" mRNA join(1135115..1135273,1135703..1136953,1137685..1137894, 1137966..1138511) /locus_tag="TCM_021769" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400068205" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400068205" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.38 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc12372t1" CDS join(1135739..1136953,1137685..1137894,1137966..1138097) /locus_tag="TCM_021769" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07303.1" /db_xref="Phytozome:PGSC0003DMP400068205" /translation="MKANQLNNGNLPELPEHIIVDILAKVPSEVLYNTFRFVCKAWYR LISSSEFTHENAVHQKPGLLIQVPRRHCDIEGTWWKTTLLQIDENEFDFTLTNFSTHS MKLIRSSCSGLVLGKTEEGTSMLCVKNILTGSVLTLPSCPSGCKHLNPDCGLALGFNP GTKEYKVVHVYADSYGFELFTIGSDHKWRRIPGPFEDLNERPFDVERFRWSDPESIGG QVLHWFVESDTYIISMDLRDEKFRRTNLPDVGRSVMKYEYDLVEMNGELCFVYKLSGF QIDLWVLKDFDRQVWSKEHSIIAMSINYTPSGASSGLTKKDKDQSHGGKQKKVDDASV YRKEKKAKLPNFLKLEALATLRNGEVIVLMDKQNSIHANIMYLYDLKHEEMRQFRIKM KKGTSFQPHRSGLVWSKEHSIIAMSTNYTPFRASSGPTKKVKDHSDGGEEKKVDDASL SRKEKKTKLPNFLKLAAVATLRNGEHEMRQFRIKMTQGTKFIPHRSSLSRRLRTDQME LSAELETSDI" gene complement(1137911..1146656) /locus_tag="TCM_021770" /note="dbxref CacaoGD:Thecc1EG021770" mRNA complement(join(1137911..1138180,1140383..1140919, 1141339..1142479,1142554..1142631,1143035..1143103, 1143189..1143240,1143479..1143633,1143718..1143832, 1143940..1144100,1144273..1144380,1145075..1145149, 1145237..1145594,1146060..1146656)) /locus_tag="TCM_021770" /product="Acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s11790.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005375t3" /inference="similar to AA sequence:ricco:27798.m000585" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc834t1" gene 1138797..1140121 /locus_tag="TCM_021771" /note="dbxref CacaoGD:Thecc1EG021771" mRNA 1138797..1140121 /locus_tag="TCM_021771" /product="3-oxo-5-alpha-steroid 4-dehydrogenase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s11800.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s11800.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g11428t00001" CDS 1139005..1139790 /locus_tag="TCM_021771" /codon_start=1 /product="3-oxo-5-alpha-steroid 4-dehydrogenase family protein" /protein_id="EOY07305.1" /db_xref="Phytozome:POPTR_0016s11800.1" /db_xref="TAIR:AT2G38050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q38944" /translation="MPRDSDQPLFHYSLLGLYLIVLPTWISLKFIQAPYGKHNRPGWG PTLSPSLAWFLMESPTLWLTVLLFPFGRHFSNPKSFILMSPYLFHYFNRTVLYPLRLS RSSNGQARSFPVSIALMAFGFNLLNAYLQARWVSHYKDDYENDKLFWLRFLVGLLVFI AGMWVNVWADSVLVGLKKQGGGGYKVPRGGLFDLVSCPNYFGEIMEWLGWAVMTWSCV GFGFFLYTCANLVPRARASRRWYLEKFKDDYPKHRKAVIPFLY" CDS complement(join(1141340..1142479,1142554..1142631, 1143035..1143103,1143189..1143240,1143479..1143633, 1143718..1143832,1143940..1144100,1144273..1144380, 1145075..1145149,1145237..1145563)) /locus_tag="TCM_021770" /note="dbxref ricco:27798.m000585; paralog of Thecc1EG005375t3" /codon_start=1 /product="Acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit" /protein_id="EOY07304.1" /db_xref="TAIR:AT2G38040.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HKX6" /translation="MASMSYSPAAFTGTAASDLLRSSSNGVSGIPLKTLGKARFTVKG RDATVAAKMRKVKKHEYPWPADPDPNVKGGVLTHLSPFKPLKEKQKPVTLDFEKPLVA LEKKIIDVRRMANETGLDFSDQIISLENKYQQALKDLYTHLTPIQRVNIARHPNRPTF LDHVFSITDKFVELHGDRAGYDDPAVVTGIGTIDGRRYMFMGHQKGRNTKENIQRNFG MPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAFADLKSEELGQGEAIAHNLRTMFGL KVPIVSIVIGEGGSGGALAIGCANKLLMLENAVFYVASPEACAAILWKSAKASPKAAE KLRITARELSKLQICDGIIPEPLGGAHADPAWTSQQIKAAINETMDELTAMDTEKLLK HRMLKFRKLGGFQEGVPVDPKKKVNMKRKEETVGRTSKAELEGEVEKLKQQILKAKES STKPPELALKDMIEKLKKEVDHEYSEAVKAMGLKDRLAMLREEVSKVNSKDQLMNPVI MDKIEKLKHEFNQGLAAAPNYTTLKYKLDMLKEFSKAKSLSEAATLKQEVNKKFNEVM GQPEINEKFEALKAEVQNSGASSFVDLDQGLKDKILNMKKEVELEIINALESLGLDVE VVKSNAKVLGDWALLAVFKDKVENLNEEINKKIENVVHSSELKNMMESLKLEIAKAGK TPNTESKSKIKALEQQIKQRLSEAISSSELKGKHEELKAEIFEAIQSSGGTDGSLQKE TKYEEPRVEINLGANRSFA" gene 1147203..1149914 /locus_tag="TCM_021772" /note="dbxref CacaoGD:Thecc1EG021772" mRNA join(1147203..1147260,1147344..1147500,1147608..1147695, 1148200..1148263,1148633..1148738,1148808..1148897, 1149197..1149250,1149660..1149914) /locus_tag="TCM_021772" /product="Cysteine proteinases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400035349" /inference="similar to AA sequence:Phytozome:POPTR_0016s11780.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01405t00001; inference alignment:Newbler:10:TSA:cgbaB_g01405t00002" mRNA join(1147203..1147260,1147344..1147500,1147608..1147695, 1148200..1148263,1148633..1148738,1148843..1148897, 1149197..1149250,1149660..1149914) /locus_tag="TCM_021772" /product="Cysteine proteinases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400035349" /inference="similar to AA sequence:Phytozome:POPTR_0016s11780.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01405t00002; inference alignment:Newbler:10:TSA:cgbaB_g01405t00002" CDS join(1147239..1147260,1147344..1147500,1147608..1147695, 1148200..1148263,1148633..1148738,1148843..1148897, 1149197..1149250,1149660..1149803) /locus_tag="TCM_021772" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Cysteine proteinases superfamily protein isoform 1" /protein_id="EOY07306.1" /db_xref="Phytozome:POPTR_0016s11780.1" /db_xref="TAIR:AT2G38025.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GYW0" /translation="MADKVFNENILEQIRHGIAQFELVSSPVSSVSTPSVSHSLSAAF LGDSSSRFFARIGPSLGSGSPATKKVEHFSVHKVTGDGRCLFRALVKGMALHKGIALR PQKERDDADELRMAVKEVLCDSGKDRQQYEEALVAITVEESLKRYCQRIQQPDFWGGE SELLVLSRLCGQPIIVYIPEHEHRKGGWGSGFIPIAEYGAEFRKGSGKAKPRKVVRLL YSGRNHYDLLV" CDS join(1147239..1147260,1147344..1147500,1147608..1147695, 1148200..1148263,1148633..1148738,1148808..1148897, 1149197..1149250,1149660..1149759) /locus_tag="TCM_021772" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Cysteine proteinases superfamily protein isoform 2" /protein_id="EOY07307.1" /db_xref="Phytozome:POPTR_0016s11780.1" /db_xref="TAIR:AT2G38025.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SPE6" /translation="MADKVFNENILEQIRHGIAQFELVSSPVSSVSTPSVSHSLSAAF LGDSSSRFFARIGPSLGSGSPATKKVEHFSVHKVTGDGRCLFRALVKGMALHKGIALR PQKERDDADELRMAVKEVLCDSGKDRQQYEEALVAITVEESLKRNPCDENLSTAAVTA NAFNNLIFGEESQSSWCFQDCAVSQLLSIYLSMSIGRVDGVQVLFPLQNTELSSARAP EKQNPGKS" gene 1150471..1153635 /locus_tag="TCM_021773" /note="dbxref CacaoGD:Thecc1EG021773" mRNA join(1150471..1151158,1152898..1153635) /locus_tag="TCM_021773" /product="Josephin family protein" /inference="alignment:exonerate-protein:2:frave:gene18786" /inference="similar to AA sequence:ricco:27798.m000587" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13069t1" CDS join(1150916..1151158,1152898..1153479) /locus_tag="TCM_021773" /note="dbxref ricco:27798.m000587" /codon_start=1 /product="Josephin family protein" /protein_id="EOY07308.1" /db_xref="TAIR:AT3G54130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M391" /translation="MEGASNGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALAS DLDTKERQMMLEGTAAAGDFLSEESHNVSLGGDFSIQVLEKALEVWDLQVIPLDCPVA EPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPQHFSKFYLSAYLDSLKG SGWSIFLVRGNFPKECPISSSEASNRYGQWLSPEDAERITKSCNLTQTQRNDIDQLPP EPVFSLDGTGVQISDIEDEDLKAAIAASLMDSSPATASVEASTSKTENKDSQEKTA" gene 1153711..1156152 /locus_tag="TCM_021774" /note="dbxref CacaoGD:Thecc1EG021774" mRNA join(1153711..1154137,1154273..1154344,1154482..1154519, 1154754..1154934,1155208..1155419,1155672..1156120) /locus_tag="TCM_021774" /product="Reticulon family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034020001" /inference="similar to AA sequence:Phytozome:GSVIVT01034020001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g15188t00001" CDS join(1154124..1154137,1154273..1154344,1154482..1154519, 1154754..1154934,1155208..1155419,1155672..1155841) /locus_tag="TCM_021774" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Reticulon family protein isoform 1" /protein_id="EOY07309.1" /db_xref="Phytozome:GSVIVT01034020001" /db_xref="TAIR:AT3G54120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IG40" /translation="MISQYWNLVATNLVFHQPSQYNSKDIGERQRTVHEVLGGGFVAD VMLWRRGNLTLGILLVTLAAWVVFEKSGYTLLSLVSSVLLLLNVILFLWAKSAAILNR PAPPLPELYLSEEMVNEVGAFMRAHVNDFLSASQDIAMGRDARLFVKVAAYLLLISVV GGLTDFLTLGYTSLVVVLTVPALYERYENYINSYAITGFRKMQQLYVKFDAKFVNRIR KWILERQKLS" mRNA join(1154251..1154519,1154754..1154934,1155208..1155419, 1155672..1156152) /locus_tag="TCM_021774" /product="Reticulon family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034020001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045537t1" /inference="similar to AA sequence:Phytozome:GSVIVT01034020001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:PASA:2:TSA:puevd3b021068t1a2; inference alignment:Newbler:10:TSA:cgbaP2_g15188t00001" CDS join(1154453..1154519,1154754..1154934,1155208..1155419, 1155672..1155841) /locus_tag="TCM_021774" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG045537t1" /codon_start=1 /product="Reticulon family protein isoform 2" /protein_id="EOY07310.1" /db_xref="Phytozome:GSVIVT01034020001" /db_xref="TAIR:AT3G54120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IG40" /translation="MGSSNRLFNRQRTVHEVLGGGFVADVMLWRRGNLTLGILLVTLA AWVVFEKSGYTLLSLVSSVLLLLNVILFLWAKSAAILNRPAPPLPELYLSEEMVNEVG AFMRAHVNDFLSASQDIAMGRDARLFVKVAAYLLLISVVGGLTDFLTLGYTSLVVVLT VPALYERYENYINSYAITGFRKMQQLYVKFDAKFVNRIRKWILERQKLS" mRNA join(1154492..1154616,1154754..1154934,1155208..1155419, 1155672..1156151) /locus_tag="TCM_021774" /product="Reticulon family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034020001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045537t1" /inference="similar to AA sequence:ricco:27798.m000588" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1390t1; inference alignment:Newbler:10:TSA:cgbaB_g02708t00002; inference alignment:Newbler:10:TSA:cgbaP2_g15188t00001" CDS join(1154765..1154934,1155208..1155419,1155672..1155841) /locus_tag="TCM_021774" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:27798.m000588; paralog of Thecc1EG045537t1" /codon_start=1 /product="Reticulon family protein isoform 3" /protein_id="EOY07311.1" /db_xref="TAIR:AT3G54120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IG40" /translation="MLWRRGNLTLGILLVTLAAWVVFEKSGYTLLSLVSSVLLLLNVI LFLWAKSAAILNRPAPPLPELYLSEEMVNEVGAFMRAHVNDFLSASQDIAMGRDARLF VKVAAYLLLISVVGGLTDFLTLGYTSLVVVLTVPALYERYENYINSYAITGFRKMQQL YVKFDAKFVNRIRKWILERQKLS" mobile_element complement(1156268..1156433) /note="source:scaffold_1_CACTA_0032 2772 2938" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1157158..1159421) /note="source:scaffold_9_CACTA_0932 16 1637" /mobile_element_type="transposon:TIR/CACTA" gene complement(1160013..1161547) /locus_tag="TCM_021775" /note="dbxref CacaoGD:Thecc1EG021775" mRNA complement(join(1160013..1160464,1161121..1161547)) /locus_tag="TCM_021775" /product="60S ribosomal protein L21" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s21010.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024987t2" /inference="similar to AA sequence:Phytozome:POPTR_0016s06110.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13098t1" CDS complement(join(1160207..1160464,1161121..1161357)) /locus_tag="TCM_021775" /note="paralog of Thecc1EG024987t2" /codon_start=1 /product="60S ribosomal protein L21" /protein_id="EOY07312.1" /db_xref="Phytozome:POPTR_0016s06110.1" /db_xref="TAIR:AT1G09690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9AV87" /translation="MPAGHGLRARTRDLFARPFRKKGYIPLSTYLRTYKTGDYVDIKV NGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVQPSRCT EEFKLRKVKNDQLKAEAKAKGEVISTKRQPEGPKPGFMVEGATLETVTPIPYDVVNDL KGGY" mobile_element complement(1161528..1161663) /note="source:CACAO_PIF_E119_scaffold_3 2153 2287" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(1162078..1164651) /locus_tag="TCM_021776" /note="dbxref CacaoGD:Thecc1EG021776" mRNA complement(join(1162078..1163661,1163895..1163953, 1164241..1164651)) /locus_tag="TCM_021776" /product="RING/U-box superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:27798.m000589" /inference="similar to AA sequence:Phytozome:POPTR_0006s09670.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06248t00001" CDS complement(join(1162509..1163661,1163895..1163953, 1164241..1164495)) /locus_tag="TCM_021776" /codon_start=1 /product="RING/U-box superfamily protein, putative" /protein_id="EOY07313.1" /db_xref="Phytozome:POPTR_0006s09670.1" /db_xref="TAIR:AT5G01160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HKX7" /translation="MLQIRLSKGPSADAGGSVKPLPVETVTVACPDHLVLADLPVAKS IGAATSSSLVKTVGRRSRRQLGERVHFCVRCDFPIAIYGRLSPCEHAFCLDCARSDSI CYLCDERIQKIQTIKMMEGILICAAPHCLKSFLKKTEFEFHIHESHADLLLPNAEKED GKESEVLSAKQPTGLDTTVRGPPRPVISPGSNPQLYDTEEKARRQQPREQLPSRPMMQ PKGAPAFGQVQNLPSESQPDNNLPPGFDRPGPHNHFQQGFDRQGTPQPESSQFSDKQQ GVLSENQFSEYPPMHSMQPPNFVMPMNSNPMFAPYGVPPFPTDGAQPFYGAPYEMARP SSAPDVGSEQGSLLGFPPGPVGGINYPTGYPQPWNGGQPGAPFEAPPGGHMMGDAFAN YQGDYGRNPGGLPMIPPPPSANKGMEAVQGSNSMDPRDGKGILAPQPMQVPPPPPPLP HHMPQLKRGNFHSGDMGRDGQGFGWQHENRDGFGGSQD" gene complement(1165643..1168942) /locus_tag="TCM_021777" /note="dbxref CacaoGD:Thecc1EG021777" mRNA complement(join(1165643..1165801,1166127..1166213, 1166623..1166697,1167158..1167262,1167353..1167451, 1167544..1167677,1167772..1167850,1167952..1168170, 1168690..1168942)) /locus_tag="TCM_021777" /product="Plant uncoupling mitochondrial protein 1" /inference="alignment:exonerate- protein:2:ricco:27798.m000592" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041688t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s09660.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09637t00001" CDS complement(join(1165766..1165801,1166127..1166213, 1166623..1166697,1167158..1167262,1167353..1167451, 1167544..1167677,1167772..1167850,1167952..1168170, 1168690..1168773)) /locus_tag="TCM_021777" /note="paralog of Thecc1EG041688t1" /codon_start=1 /product="Plant uncoupling mitochondrial protein 1" /protein_id="EOY07314.1" /db_xref="Phytozome:POPTR_0006s09660.1" /db_xref="TAIR:AT3G54110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O81845" /translation="MVADQKGKSDISLAGTFASSAFAACFAEICTIPLDTAKVRLQLQ KKAVGGDAAALPKYRGLLGTVGTIAREEGLAALWKGVIPGLHRQCLFGGLRIGMYEPV KNFYVGKDHVGDAPLTKKILAALTTGALGITVANPTDLVKVRLQAEGRLPPGVPRRYS GALNAYSTIARQEGVAALWTGLGPNIARNAIINAAELASYDQVKQTILKIPGFTDNVV THLFAGLGAGFFAVCIGSPVDVVKSRMMGDSTYKNTLDCFIKTFKSDGPLAFYKGFIP NFGRLGSWNVIMFLTLEQAKKFVRNLESS" gene complement(1171127..1172787) /locus_tag="TCM_021778" /note="dbxref CacaoGD:Thecc1EG021778" mRNA complement(join(1171127..1171537,1171643..1171871, 1171978..1172081,1172234..1172787)) /locus_tag="TCM_021778" /product="Nucleotide-sugar transporter family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s20130.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042615t1" /inference="similar to AA sequence:Phytozome:GSVIVT01034023001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13093t2" CDS complement(join(1171391..1171537,1171643..1171871, 1171978..1172081,1172234..1172674)) /locus_tag="TCM_021778" /note="paralog of Thecc1EG042615t1" /codon_start=1 /product="Nucleotide-sugar transporter family protein" /protein_id="EOY07315.1" /db_xref="Phytozome:GSVIVT01034023001" /db_xref="TAIR:AT5G05820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6DBP3" /translation="MKTVIPWTTVWIVISWYSSNIGVLLLNKYLLSNYGFKYPIFLTM CHMLACSLLSYVAIAWIKVVPMQSIGSRKQFLKITGLSLVFCFSVVLGNVSLRYLPVS FNQAIGATTPFFTAVFAYVMSKKMERWVTYLTLIPVVAGVIIASGAEPSFHLFGFLMC VSATAARALKSVLQAILLSSEEEKLNSMNLLMYMAPIAVAILLPATLLMERNVVAITV ALARKDIKIVYYLFFNSSLAYLVNLTNFLVTKHTSALTLQVLGNAKGAVAVVVSILIF RNPISLIGMLGYSLTVFGVVLYSESKKGNK" gene complement(1173436..1179361) /locus_tag="TCM_021779" /note="dbxref CacaoGD:Thecc1EG021779" mRNA complement(join(1173436..1174136,1174273..1174442, 1174681..1174744,1175168..1175293,1175396..1175666, 1175783..1176047,1176495..1176851,1177180..1177388, 1177515..1177874,1178036..1178059,1178309..1178879, 1179054..1179361)) /locus_tag="TCM_021779" /product="Neutral/alkaline non-lysosomal ceramidase" /inference="alignment:exonerate- protein:2:ricco:27798.m000593" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041695t1" /inference="similar to AA sequence:ricco:27798.m000593" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1878t2" CDS complement(join(1173570..1174136,1174273..1174442, 1174681..1174744,1175168..1175293,1175396..1175666, 1175783..1176047,1176495..1176851,1177180..1177388, 1177515..1177855)) /locus_tag="TCM_021779" /note="dbxref ricco:27798.m000593; paralog of Thecc1EG041695t1" /codon_start=1 /product="Neutral/alkaline non-lysosomal ceramidase" /protein_id="EOY07316.1" /db_xref="TAIR:AT2G38010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q304B9" /translation="MKMVSKDCCCMERPSMVIWFSFLLFLLLQIGGSLSASNCLVGLG SYDITGPAADVNMMGYANIEQIASGIHFRLRARAFIVAEPHGNRVVFVNLDACMASQI VTIKVLERLKARYGELYTEKNVAFSGIHTHAGPGGYLQYVVYIVTSLGFVRQSFDVIV DGIEKSIIQAHENLRPSSILINKGELLDAGINRSPSAYLNNPADERSKYKYNVDKEMT LIKFVDEEWGPIGSFNWFATHGTSMSRTNSLISGDNKGAAARFMEDWFEQTGFMTDFR SWPFNNSATDGIPRRVSSLVPNLHDKRNELIELAASFKSSQGQSATRFLSVARRVRNA LRRADRPQFVSAFCQSNCGDVSPNTLSAFCRDTGLPCDFNHSTCNGKNEQCYGRGPGY PDEFKSTEIIGKRQFRKAVELFNKATEKLKGKVGYQHAYLDFSNLEVSVPKMGGGSAV VKTCPAALGFAFAAGTTDGPGAFDFTQGDDKGNAFWRLVRNLLKTPNQEQINCQKPKP ILLDTGEMKQPYDWAPSILPVQILRIGQLVILSVPAEFTTMAGRRLRDAVKTVLTSGS NRQFDSNVHIVIAGLTNTYSQYVTTFEEYEVQRYEGASTLYGPHTLNAYIQEFKKLAT ALISGASVEPGPQPPDLLDKQISLLPPVVLDATPPLVNFGDVKDDVPFNTTFKQGDIV SVTFWSACPRNDLMTEGTFALVQYLQDHKTWIPAYDDDDFCLRFKWSRPAKLSPQSYA TIEWWIPESVVSGVYRIRHFGASKSLLGSVRHFAGSSSAFVVEKPAEIS" gene complement(1180269..1181613) /locus_tag="TCM_021780" /note="dbxref CacaoGD:Thecc1EG021780" mRNA complement(join(1180269..1180521,1180933..1180975, 1181079..1181307,1181401..1181436,1181523..1181563)) /locus_tag="TCM_021780" /product="Ribosomal protein L35Ae family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016386001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042616t1" /inference="similar to AA sequence:Phytozome:Glyma02g42080.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc151t9" mRNA complement(join(1180278..1180523,1180933..1180975, 1181079..1181307,1181401..1181436,1181523..1181613)) /locus_tag="TCM_021780" /product="Ribosomal protein L35Ae family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016386001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042616t1" /inference="similar to AA sequence:Phytozome:Glyma02g42080.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1367t4; alternateUTRof:Thecc1EG021780t1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc151t9" mRNA complement(join(1180312..1180521,1180933..1180975, 1181079..1181307,1181401..1181436,1181523..1181612)) /locus_tag="TCM_021780" /product="Ribosomal protein L35Ae family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016386001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042616t1" /inference="similar to AA sequence:Phytozome:Glyma02g42080.2" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc151t9; alternateUTRof:Thecc1EG021780t1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc151t9" CDS complement(join(1180934..1180975,1181079..1181307, 1181401..1181436,1181523..1181554)) /locus_tag="TCM_021780" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042616t1" /codon_start=1 /product="Ribosomal protein L35Ae family protein isoform 1" /protein_id="EOY07317.1" /db_xref="Phytozome:Glyma02g42080.2" /db_xref="TAIR:AT1G74270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2D6E9" /translation="MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNSKE EVGWYCGKRMAYIYKAKVKKNGSHYRCIWGKVTRAHGNSGIVRAKFKSNLPPKSMGDK VRVFMYPSNI" CDS complement(join(1180934..1180975,1181079..1181307, 1181401..1181436,1181523..1181554)) /locus_tag="TCM_021780" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042616t1" /codon_start=1 /product="Ribosomal protein L35Ae family protein isoform 1" /protein_id="EOY07318.1" /db_xref="Phytozome:Glyma02g42080.2" /db_xref="TAIR:AT1G74270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2D6E9" /translation="MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNSKE EVGWYCGKRMAYIYKAKVKKNGSHYRCIWGKVTRAHGNSGIVRAKFKSNLPPKSMGDK VRVFMYPSNI" CDS complement(join(1180934..1180975,1181079..1181307, 1181401..1181436,1181523..1181554)) /locus_tag="TCM_021780" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG042616t1" /codon_start=1 /product="Ribosomal protein L35Ae family protein isoform 1" /protein_id="EOY07319.1" /db_xref="Phytozome:Glyma02g42080.2" /db_xref="TAIR:AT1G74270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2D6E9" /translation="MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNSKE EVGWYCGKRMAYIYKAKVKKNGSHYRCIWGKVTRAHGNSGIVRAKFKSNLPPKSMGDK VRVFMYPSNI" gene 1182506..1186013 /locus_tag="TCM_021782" /note="dbxref CacaoGD:Thecc1EG021782" mRNA join(1182506..1182718,1182839..1183039,1183294..1183360, 1183620..1183951,1184193..1184334,1184729..1184854, 1185261..1186013) /locus_tag="TCM_021782" /product="Chaperone protein dnaJ-related" /inference="alignment:exonerate- protein:2:ricco:27798.m000596" /inference="similar to AA sequence:ricco:27798.m000596" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13099t1" CDS join(1182697..1182718,1182839..1183039,1183294..1183360, 1183620..1183951,1184193..1184334,1184729..1184854, 1185261..1185645) /locus_tag="TCM_021782" /note="dbxref ricco:27798.m000596" /codon_start=1 /product="Chaperone protein dnaJ-related" /protein_id="EOY07320.1" /db_xref="TAIR:AT2G38000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SH87" /translation="MEQPLLSEKRSESEESERLSSYQYVGRTGSVIPTASLAGTEVSI EEIRSATSFSGHYPPSIHAPLISSPEPHPNEQVVLHQGTYTTDYGAYSNDFQRQLLDE VEIRELLIDHIGHRCCWGSRPARTWKINAVEDCNVYVGTLETFLEEREVVRETEPYLG GKIDGKDNSPELGIWELDLRSQFPVLFVPYKETRIKIPHSETVEKCSGCAGRGDIACP TCNADQERGFYKENQMSQCPACYGRGLIAHRDGSDTICTRCDGKGKIPCATCTSRGLL KCETCHGSGSLLTCKIAIVKWKTLSTRKVSATSGAASVPDEVFHRAKGVQLCNTQAHQ CTPAFFADSFFLNKFSSDVIADRAFVPPTARVICERHTISVVPVTRVTMSHHRQSFSF YIVGFSRDVYLKDYYPARFCWGLCPCLEWLKL" mobile_element 1186670..1187806 /note="source:CACAO_Again_on_E92_scaffold_3 140 1287" /mobile_element_type="transposon:TIR/hAT" gene 1192355..1196649 /locus_tag="TCM_021783" /note="dbxref CacaoGD:Thecc1EG021783" mRNA join(1192355..1192500,1192662..1192913,1193095..1193271, 1193816..1193888,1193988..1194058,1194148..1194236, 1194321..1194453,1194545..1194777,1194854..1195330, 1195426..1196339) /locus_tag="TCM_021783" /product="O-fucosyltransferase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034027001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037543t1" /inference="similar to AA sequence:Phytozome:GSVIVT01034027001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc220t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g819t1" mRNA join(1192495..1192500,1192662..1193271,1193816..1193888, 1193988..1194058,1194148..1194236,1194321..1194453, 1194545..1194777,1194854..1195330,1195426..1196649) /locus_tag="TCM_021783" /product="O-fucosyltransferase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034027001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037543t1" /inference="similar to AA sequence:Phytozome:GSVIVT01034027001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g819t1" CDS join(1192663..1193271,1193816..1193888,1193988..1194058, 1194148..1194236,1194321..1194453,1194545..1194777, 1194854..1195330,1195426..1195675) /locus_tag="TCM_021783" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG037543t1" /codon_start=1 /product="O-fucosyltransferase family protein isoform 1" /protein_id="EOY07321.1" /db_xref="Phytozome:GSVIVT01034027001" /db_xref="TAIR:AT3G54100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M393" /translation="MSSGGANNSANGSPIQGGPTTARRRVGDLLGAESDSNNISSGSD YYALASDDEEADNPNGYIPSCSCGSHYSQQHHHQNHPVIRYLLLRRKLLFSWVPDEWF IWVDNTCHGAVNMAQSLRSGRNVGRKVLGVLLLMAVVSFFLKVSLLSSHVEDNGKLKG EKGPLILQTIKEDWSLAQRVVAETHTEPETEHSMPKRVLERVSTPEIWMKPNSDNYQQ CISRPKNRIRTGSKTNGYIIVHANGGLNQMRTGICDMVAVAKIMNATLVLPSLDHESF WTDLSDFKDIFDWRHFINVLKDDIEIVEYLPVKYSGIKPLAKAPVSWSRASYYRREVL PLLKRHKVIKFTHSDSRLANNGLAPSIQRLRCRANYEALRYTKEIEDLGRTLVDRLKN NNEPYIALHLRYEKDMLAFTGCIHNLTVEEASELTVMRYNVEHWKVKEIDGVEQRLKG GCPMTPREAAMFLKAMGYPSSTPIYIVAGEIYGQNSMAAFRAEYPNVFTHSTLATEEE LELLKPYQNRLAALDYIVALESDVFVYTYDGNMAKAVQGHRRFEGFRKTINPDRVNFV RLIDQLDGGVISWEQFSSEVKSLHSDRLGAPYLRRPGESPRLEENFYANPLPGCICNR SREQQIISLKFDKNLNSVRR" CDS join(1192860..1192913,1193095..1193271,1193816..1193888, 1193988..1194058,1194148..1194236,1194321..1194453, 1194545..1194777,1194854..1195330,1195426..1195675) /locus_tag="TCM_021783" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG037543t1" /codon_start=1 /product="O-fucosyltransferase family protein isoform 2" /protein_id="EOY07322.1" /db_xref="Phytozome:GSVIVT01034027001" /db_xref="TAIR:AT2G37980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M393" /translation="MRVPLLAAAPPPKPPRDQVSLLSSHVEDNGKLKGEKGPLILQTI KEDWSLAQRVVAETHTEPETEHSMPKRVLERVSTPEIWMKPNSDNYQQCISRPKNRIR TGSKTNGYIIVHANGGLNQMRTGICDMVAVAKIMNATLVLPSLDHESFWTDLSDFKDI FDWRHFINVLKDDIEIVEYLPVKYSGIKPLAKAPVSWSRASYYRREVLPLLKRHKVIK FTHSDSRLANNGLAPSIQRLRCRANYEALRYTKEIEDLGRTLVDRLKNNNEPYIALHL RYEKDMLAFTGCIHNLTVEEASELTVMRYNVEHWKVKEIDGVEQRLKGGCPMTPREAA MFLKAMGYPSSTPIYIVAGEIYGQNSMAAFRAEYPNVFTHSTLATEEELELLKPYQNR LAALDYIVALESDVFVYTYDGNMAKAVQGHRRFEGFRKTINPDRVNFVRLIDQLDGGV ISWEQFSSEVKSLHSDRLGAPYLRRPGESPRLEENFYANPLPGCICNRSREQQIISLK FDKNLNSVRR" gene complement(1196428..1202200) /locus_tag="TCM_021784" /note="dbxref CacaoGD:Thecc1EG021784" mRNA complement(join(1196428..1197872,1198100..1198751, 1201251..1202200)) /locus_tag="TCM_021784" /product="Fructokinase-like 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400035367" /inference="similar to AA sequence:Phytozome:GSVIVT01034028001" /note="quality class is medium, express is weak, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.29 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g845t1" CDS complement(join(1197180..1197872,1198100..1198751, 1201251..1201849)) /locus_tag="TCM_021784" /codon_start=1 /product="Fructokinase-like 1" /protein_id="EOY07323.1" /db_xref="Phytozome:GSVIVT01034028001" /db_xref="TAIR:AT3G54090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HKY0" /translation="MGMILGKISVETPKYEVVQSSADYEIRKYSPSVVAEVTYDPSQF KGNKDGGFSVLANYIGALGNPQNAKPEKIAMTAPVITKSPGSESEKIAMTAPVITKGE KNMVTMQFLLPAMYERAEEAPKPLDERVVIREEGERKYGVVKFAGVATDQVVEEKVEN LKKSLERDGHKVIGEFLLARYNPPWTLPAFRTNEVMLPVQTVGLPRASVETNEAVESP KPTRRGRKKKPTSSSPATKTRRTRKTQNENGSIESESQGEEEELGDFDDGMDFPYEEP PLICCFGAAQKEFVPTVRVNEEKMHPDKYSHWKMLQWDPPEFGRAPGGPPSNVAISHV RLGGRAAFMGKVGDDEYGDELVLMMNKEKVQTRGVKFDENVKTGCTYMKVKFDEKGRL KMETVKESAEDSLLSSELNLAVLKETRIFHFNSEVLTSPSMQSTLFKAIAWSKKFGGL IFFDLNLPLLLWRSRDETREVIKEAWNKADIIEVSRQELEFLLDEEYYERKRNYRPQY YAESFDQTKNRRDCYHYTSEEISPLWHDGLKYLFVTDGTLRIHYYTPSFDGVVVGTED VLITPFTCDRTGSGDAVVAGIMRKLTTYPEMFENQDTLERQLRFAIAAGIISQWTIGA VRGFPTESATQNLKEQVYVPSMW" gene 1198686..1200739 /locus_tag="TCM_021785" /note="dbxref CacaoGD:Thecc1EG021785" mRNA join(1198686..1198737,1198860..1199263,1200177..1200739) /locus_tag="TCM_021785" /product="Yos1-like protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g26980.1" /inference="similar to AA sequence:Phytozome:Glyma03g14970.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g13677t00001" CDS 1200180..1200413 /locus_tag="TCM_021785" /codon_start=1 /product="Yos1-like protein" /protein_id="EOY07324.1" /db_xref="Phytozome:Glyma03g14970.1" /db_xref="TAIR:AT2G37975.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LG42" /translation="MGFWTLLEGLLLFANALAILNEDRFLALRGWTLAEIQGGRRNTL KGQIIGLIHACQFLRLPLILFNIITIVVKLFTG" gene 1204766..1206710 /locus_tag="TCM_021786" /note="dbxref CacaoGD:Thecc1EG021786" mRNA join(1204766..1205239,1205329..1205598,1205698..1206710) /locus_tag="TCM_021786" /product="Tubulin beta 8" /inference="alignment:exonerate- protein:2:frave:gene13266.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016233t1" /inference="similar to AA sequence:ricco:30147.m013736" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02557t00001" CDS join(1204846..1205239,1205329..1205598,1205698..1206368) /locus_tag="TCM_021786" /note="dbxref ricco:30147.m013736; paralog of Thecc1EG016233t1" /codon_start=1 /product="Tubulin beta 8" /protein_id="EOY07325.1" /db_xref="TAIR:AT5G23860.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q01GL4" /translation="MREILHIQGGQCGNQIGAKFWEVVCTEHGIDSTGKYNGDSDLQL ERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWA KGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT TPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSR GSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQ NKNSSYFVEWIPNNVKSTVCDIPPNGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRK AFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEEYEEDEEEYQE" gene complement(1206848..1208740) /locus_tag="TCM_021787" /note="dbxref CacaoGD:Thecc1EG021787" mRNA complement(1206848..1208740) /locus_tag="TCM_021787" /product="Concanavalin A-like lectin family protein, putative" /inference="alignment:exonerate- protein:2:ricco:27798.m000604" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042627t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s09600.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc672t6" CDS complement(1207475..1208551) /locus_tag="TCM_021787" /note="paralog of Thecc1EG042627t1" /codon_start=1 /product="Concanavalin A-like lectin family protein, putative" /protein_id="EOY07326.1" /db_xref="Phytozome:POPTR_0006s09600.1" /db_xref="TAIR:AT5G01090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IG28" /translation="MATFSISNYFTVLTFIIFHFKILAADQSSSFSFKSFGKDPNFVS NIALYGDARVANDGSWVQLTNSVSGSAGKVMYKKPIKLVEGKVRNFASFSTYFSFSMS HENGDGLAFVMVPRSFNLNVLHNSSFGVSLGLEKRNRGAVAVEFDTFKDARYGDLNGN HVGVDVGSLVSVKARNLSSANLVLNNGEKLHSWIDYEASSKRLEIRLNQSGSTRPEDP LLSYSIDLSKLWNDEDLFVGLSASNRNSSQTCFIYSWSFKLRQVPNWMHSQPLNPEAI AKNPKPLTTAHKSSNCFWRVLAVFIFGGACGALTASCVLYLWTILGDRRPVAPEECGV HPVDFEYKKFKVAEDEEAVKVGKK" gene complement(1212325..1215193) /locus_tag="TCM_021788" /note="dbxref CacaoGD:Thecc1EG021788" mRNA complement(join(1212325..1213189,1213379..1213730, 1214059..1214237,1214646..1215193)) /locus_tag="TCM_021788" /product="Plastid transcriptionally active isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034032001" /inference="similar to AA sequence:Phytozome:GSVIVT01034032001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g07485t00001" mRNA complement(join(1212846..1213189,1213379..1213412, 1213431..1213730,1214059..1214237,1214646..1215138)) /locus_tag="TCM_021788" /product="Plastid transcriptionally active isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034032001" /inference="similar to AA sequence:Phytozome:GSVIVT01034032001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01432t00001; inference alignment:Newbler:10:TSA:cgbaP2_g07485t00001" CDS complement(join(1213109..1213189,1213379..1213412, 1213431..1213730,1214059..1214237,1214646..1215065)) /locus_tag="TCM_021788" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Plastid transcriptionally active isoform 2" /protein_id="EOY07328.1" /db_xref="Phytozome:GSVIVT01034032001" /db_xref="TAIR:AT3G09210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6MEN9" /translation="MKQGLLLWSPCYLSPLSFHSLSHRIPSTKHAPQLPPISASIDST DTQQRQQQLSARERRQLRNERRESKAGYSWREEVEERLIKKPKKRYTSWTEELNLDNL AHLGPQWWVVRVARIRGLETAEVVARSLARNFPDIEFKMYTPAVQEKKRLKNGSISIK PKPLFPGCVFLKCVLNKEIHDFIRECDGVGGFVGSKVGNTKRQINKPRPVSDDDMEAI FKQAKEEQEKADQAFQEEQEGEKTLTADKLNVEYNLDSNGVTTSILDSKPKRQSRKRY DTVANRAKSSKLVPGSMVRVVSGTSLEKLNRKTGKATVGFTLFGKESLVELDVKDIVL ETK" CDS complement(join(1213109..1213189,1213379..1213730, 1214059..1214237,1214646..1215065)) /locus_tag="TCM_021788" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Plastid transcriptionally active isoform 1" /protein_id="EOY07327.1" /db_xref="Phytozome:GSVIVT01034032001" /db_xref="TAIR:AT3G09210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6MEN9" /translation="MKQGLLLWSPCYLSPLSFHSLSHRIPSTKHAPQLPPISASIDST DTQQRQQQLSARERRQLRNERRESKAGYSWREEVEERLIKKPKKRYTSWTEELNLDNL AHLGPQWWVVRVARIRGLETAEVVARSLARNFPDIEFKMYTPAVQEKKRLKNGSISIK PKPLFPGCVFLKCVLNKEIHDFIRECDGVGGFVGSKVGNTKRQINKPRPVSDDDMEAI FKQAKEEQEKADQAFQEEQEGEKTLTADKLNVEYNLDSNGVTTSILDSKPKRQSRKRY DTVANRAKSSKLVPGSMVRVVSGTFAEFLGSLEKLNRKTGKATVGFTLFGKESLVELD VKDIVLETK" mobile_element complement(1215569..1215731) /note="source:CACAO_Mutator_E1376_scaffold_6 1862 2022" /mobile_element_type="transposon:TIR/Mutator" gene 1216847..1219930 /locus_tag="TCM_021789" /note="dbxref CacaoGD:Thecc1EG021789" mRNA join(1216847..1217612,1218114..1218314,1218391..1219078, 1219207..1219313,1219400..1219459,1219555..1219829) /locus_tag="TCM_021789" /product="DNA double-strand break repair rad50 ATPase, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400035321" /inference="similar to AA sequence:Phytozome:POPTR_0006s09570.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g876t6" mRNA join(1217051..1217612,1218108..1218314,1218397..1219078, 1219207..1219313,1219400..1219459,1219555..1219930) /locus_tag="TCM_021789" /product="DNA double-strand break repair rad50 ATPase, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400035321" /inference="similar to AA sequence:Phytozome:POPTR_0006s09570.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04729t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g876t6" CDS join(1217174..1217612,1218108..1218314,1218397..1219078, 1219207..1219313,1219400..1219459,1219555..1219607) /locus_tag="TCM_021789" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="DNA double-strand break repair rad50 ATPase, putative isoform 2" /protein_id="EOY07330.1" /db_xref="Phytozome:POPTR_0006s09570.1" /db_xref="TAIR:AT2G37960.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HCH5" /translation="MGKQGRSKAKPENLGKGKVTPVQVAFIVDRYLSDNNYPGTRSVF RNEASALISKSPVREAPKSLLSLGAMLDEYICLKEQKVMLEQEKARLEQEKCRVQTLL QGMQSVMNAYNASATASVPVIPHATATKSVAVVPQSDPCAGSPSALGPPVYGTPTVIP VSGPSNSRMEHDNYSSPVTSQPITRKKRSSEAVTEAPAAEKKTRSKLTSRKLTTQEKL PESENVMNSQVAAQLIPANQSSPPNSTSNTSTMHVSSVAKCLFNRPHLSPPTNSSGPK TPPQAVSPQSDKSMTPLGVSSTANCSHNNTPQEITPTNCTIISTERVTVSPLKQMTCY TIERNRCISSCSPVRTSLKRLGKRDHVKGRLDFDGSDAAVNVDKPVTNETSTSESEID ADIFDLDLPSLDAFGANFSFSELLVDLDLGCEGIGYPCQPTLGPSADALSGSSHESGD GNLGAPQVMSEFSSTVTKVFSEKDMNAQGPDSVTSVKSITKCVKILSPAKGRRSSSEQ QNCSSKN" CDS join(1217174..1217612,1218114..1218314,1218391..1219078, 1219207..1219313,1219400..1219459,1219555..1219607) /locus_tag="TCM_021789" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="DNA double-strand break repair rad50 ATPase, putative isoform 1" /protein_id="EOY07329.1" /db_xref="Phytozome:POPTR_0006s09570.1" /db_xref="TAIR:AT2G37960.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HCH5" /translation="MGKQGRSKAKPENLGKGKVTPVQVAFIVDRYLSDNNYPGTRSVF RNEASALISKSPVREAPKSLLSLGAMLDEYICLKEQKVMLEQEKARLEQEKCRVQTLL QGMQSVMNAYNASATASVPVIPHATATKSVAVVPQSDPCAGSPSGPPVYGTPTVIPVS GPSNSRMEHDNYSSPVTSQPITRKKRSSEAVTEAPAAEKKTRSKLTSRKLTTQGTEKL PESENVMNSQVAAQLIPANQSSPPNSTSNTSTMHVSSVAKCLFNRPHLSPPTNSSGPK TPPQAVSPQSDKSMTPLGVSSTANCSHNNTPQEITPTNCTIISTERVTVSPLKQMTCY TIERNRCISSCSPVRTSLKRLGKRDHVKGRLDFDGSDAAVNVDKPVTNETSTSESEID ADIFDLDLPSLDAFGANFSFSELLVDLDLGCEGIGYPCQPTLGPSADALSGSSHESGD GNLGAPQVMSEFSSTVTKVFSEKDMNAQGPDSVTSVKSITKCVKILSPAKGRRSSSEQ QNCSSKN" gene 1220492..1221410 /locus_tag="TCM_021790" /note="dbxref CacaoGD:Thecc1EG021790" mRNA join(1220492..1220746,1220824..1221410) /locus_tag="TCM_021790" /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021632t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400050591" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.82 coverage" CDS join(1220512..1220746,1220824..1221179) /locus_tag="TCM_021790" /note="paralog of Thecc1EG021632t1" /codon_start=1 /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /protein_id="EOY07331.1" /db_xref="Phytozome:PGSC0003DMP400050591" /db_xref="TAIR:AT4G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BUM5" /translation="MYSCKVVDLPLNTGNKLNKEDDSGKADGMLYKSMVSSLLYLSAT RLDLMFATNLLSRFMQNPSVCHFTVAKSVLRYIKGSIDDSKSTNGFCFSFGNALFCWN IKKQDIVAQSFTKAEYKATAAAANQDIWLRKLLIDLGFKQEKATQINVDNQSAIAIAR NPVQHGKTKHIRVKYHAFRESVKEGEIQLANCPIDM" gene complement(1222076..1224290) /locus_tag="TCM_021791" /note="dbxref CacaoGD:Thecc1EG021791" mRNA complement(join(1222076..1222100,1222668..1223181, 1223457..1223681,1223772..1223879,1224003..1224290)) /locus_tag="TCM_021791" /product="High cyclic electron flow 1, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s11621.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021792t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s11621.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g882t2" CDS complement(join(1223170..1223181,1223457..1223681, 1223772..1223879,1224003..1224203)) /locus_tag="TCM_021791" /note="paralog of Thecc1EG021792t1" /codon_start=1 /product="High cyclic electron flow 1, putative" /protein_id="EOY07332.1" /db_xref="Phytozome:POPTR_0016s11621.1" /db_xref="TAIR:AT3G54050.2" /db_xref="UniProtKB/TrEMBL:UniRef50_P25851" /translation="MVQEISTSSWKFLFSQSHGSISTLLCLNLHHANHVQTFVHRIST GVQCKAVELPLPAASETQVQNKKIASLLHRSSIINLTGGQATINIQGEDQKKLDVISN ELFCNCLRSSGRTGIIASEEEDVPVAVEETYSGNYIVVFDPMYGSANIDTALTTASIF GIYGPDEQCLIDLDDSSTHTA" gene complement(1224831..1227050) /locus_tag="TCM_021792" /note="dbxref CacaoGD:Thecc1EG021792" mRNA complement(join(1224831..1225172,1225270..1225776, 1225856..1226080,1226379..1227050)) /locus_tag="TCM_021792" /product="High cyclic electron flow 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034037001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006444t1" /inference="similar to AA sequence:ricco:27798.m000608" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g823t1" CDS complement(join(1225101..1225172,1225270..1225776, 1225856..1226080,1226379..1226807)) /locus_tag="TCM_021792" /note="dbxref ricco:27798.m000608; paralog of Thecc1EG006444t1" /codon_start=1 /product="High cyclic electron flow 1" /protein_id="EOY07333.1" /db_xref="TAIR:AT3G54050.2" /db_xref="UniProtKB/TrEMBL:UniRef50_P25851" /translation="MVAAAAATASSQLLLSSSRSLSRLSPIQLCVFDSKTLVSCPSNT IKRRHVAGGVRCMAVETASDAVTKKNGFEIQALTSWLLMQEQAGVIDAELTIVMSSIS MACKQIASLVQRASISNLTGVQGAVNVQGEDQKKLDVVSNEVFSNCLRSSGRTGIIAS EEEDVPVAVEESFSGNYIVVFDPLDGSSNIDAAVSTGSIFGIYSPNDECLADISDDST LDTTEQRCVVNVCQPGSNLLAAGYCMYSSSIIFVLTLGNGVFAFTLDPMYGEFVLTQE NIQIPKAGKIYAFNEGNYQLWDDKLKKYIDDLKDPGPSGKPYSARYIGSLVGDFHRTL LYGGIYGYPRDKKSKNGKLRLLYECAPMSFIVEQAGGKGSDGHQRILDIQPVEIHQRV PLYIGSTEEVEKLEKYLA" gene 1228208..1229577 /locus_tag="TCM_021793" /note="dbxref CacaoGD:Thecc1EG021793" mRNA join(1228208..1228463,1228571..1228897,1229340..1229577) /locus_tag="TCM_021793" /product="PAR1 protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s09540.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015178t1" /inference="similar to AA sequence:Phytozome:Glyma01g26840.2" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaB_g13610t00001" CDS join(1228400..1228463,1228571..1228897,1229340..1229488) /locus_tag="TCM_021793" /note="paralog of Thecc1EG015178t1" /codon_start=1 /product="PAR1 protein" /protein_id="EOY07334.1" /db_xref="Phytozome:Glyma01g26840.2" /db_xref="TAIR:AT3G54040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7THD8" /translation="MASFKFPVFLFISSLFLHASLAEIICEDLPKDVCAFSIASSGKR CLLETAVVKDGNVEYQCRTSEVVVERMAEYIESDECVRACGVDRSSIGISSDSLLEPQ LTAKLCAPACYQKCPNIVDLYFNLAAGEGVFLPDLCHAQRTNPRRTMFELLSSGAAPG PVSSEPGSLVGEAPAPAPL" gene complement(1228869..>2274214) /locus_tag="TCM_021794" /note="dbxref CacaoGD:Thecc1EG021794" mRNA complement(join(1228869..1229574,2168395..2168404, 2272195..2273001,2273809..2273877,2274006..>2274214)) /locus_tag="TCM_021794" /product="Pectin lyase-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025593001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042986t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s23090.1" /note="quality class is strongpartial, express is strong, homology is ortholog strong, intron is weak, protein is partial5; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc589t6" gene complement(1230527..1240479) /locus_tag="TCM_021795" /note="dbxref CacaoGD:Thecc1EG021795" mRNA complement(join(1230527..1231452,1231538..1232494, 1232577..1232705,1232876..1233085,1238525..1238779, 1238865..1238993,1239100..1239344,1239713..1239864, 1240319..1240479)) /locus_tag="TCM_021795" /product="Laccase-7" /inference="alignment:exonerate- protein:2:ricco:27798.m000610" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042428t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016490001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2525t1" CDS complement(join(1231322..1231452,1231538..1232494, 1232577..1232705,1232876..1233085,1238525..1238779, 1238865..1238993,1239100..1239344,1239713..1239864, 1240319..1240411)) /locus_tag="TCM_021795" /note="paralog of Thecc1EG042428t1" /codon_start=1 /product="Laccase-7" /protein_id="EOY07336.1" /db_xref="Phytozome:GSVIVT01016490001" /db_xref="TAIR:AT3G09220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SR40" /translation="MGRPVFLFACALLLLAASTASASKIVEHTFYVQNLTVNRLCNRQ VINAVNGSLPGPTIRVREGDTLVVHVFNKSPYNMTVHWHGVFQILSAWADGPSMVTQC PILPGSKYTYKFKISKQEGTLWWHAHVSWLRATVYGALIIRPRAGHSYPFPKPYKEVP ILLGEWWNANVVDVENEALATGAGPNISDAYTINGWPGDLYPCSQNQMYKLKVEQGKT YLLRIINAALNNQLFYKIANHKMTVVAIDACYTKPYVTDVVVAAPGQTLDVLLTADQP VGSYYMAARAYASAADGPNMITQCPIRPGNKYTYKFRITGQEGTFWWHAHVSWLRATV YGALVVRPRSGRSYPFPKPHREVPILLGEWWNANVIDVEQQAVATGGAPNLSDAYTIN GWPGDLYPCSQNHMYKLQVETGKTYLLRIVNAALNNQLFYKIAKHKLRVVAVDAAYTK PYVTDVVVIAPGQTVDVLLAADQRVGSFFMAATPYASADGVPFDDTTTRGVVTYDGTP SSATPVMPDLPAFNDTPTAHKFFSNLTGLKGGPNWVEVPRKVDHKMFVTIGLGLEACP ANTTCVGPNGVRPSASMNNQSFALPTTVSILQALFSNVGGVYTTDFPAKPPIQFDYTN ATSVGNNPGLFFAPKATKVTKLKFNSTVEMILQNTAILGVENHPMHIHGFNFHVLAQG FGNYNPATDRKKFNLVDPQMRNTIGVPVGGWAVIRFTANNPGVWVMHCHLDVHLGWGL ATAFVVENGPTPATTLPPPPADLPKC" gene 1245745..1248693 /locus_tag="TCM_021796" /note="dbxref CacaoGD:Thecc1EG021796" mRNA join(1245745..1246169,1246966..1248693) /locus_tag="TCM_021796" /product="R2r3-myb transcription factor, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034041001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042629t1" /inference="similar to AA sequence:Phytozome:GSVIVT01034041001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06448t00001" CDS join(1245836..1246169,1246966..1247843) /locus_tag="TCM_021796" /note="paralog of Thecc1EG042629t1" /codon_start=1 /product="R2r3-myb transcription factor, putative" /protein_id="EOY07337.1" /db_xref="Phytozome:GSVIVT01034041001" /db_xref="TAIR:AT3G09230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SPH1" /translation="METEMEAVENGNDATVTEINVPVAIDGGEATEGGGDGGSRGDSA IGGRKRKERVKGPWSPEEDVILSELVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLD PAVKRKPFTDEEDQMIISAHAVHGNKWAVIARLLPGRTDNAIKNHWNSTLRRRCMELG RIKSESEHMAEDASLDKTKASSEETLSCAEDSSFRSMEGKDVSSLEKLDTQLKGKSLT GIQSSHESIEPPTLFRPVARVSAFNVYNHVDRPEFVLPCSRPVLMQGPLIQTSKPDVG ICKLHEGVYKEGIVPLQCGHGCCGTQNVRNGNSNSLLGPEFVEFSEPPSFPNYELAAI ASDISNLAWLKSGLENNSVRPMDDAAGGTTSHRSQVCTGHFEKTRMSDHFHIEERNKK LMGRMTNLLST" gene complement(1247880..1248829) /locus_tag="TCM_021798" /note="dbxref CacaoGD:Thecc1EG021798" mRNA complement(join(1247880..1248031,1248507..1248829)) /locus_tag="TCM_021798" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS complement(join(1247948..1248031,1248507..1248662)) /locus_tag="TCM_021798" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07338.1" /translation="MNFHKLPGMKHSLQGYQQQQNQDPRVVEAIPQLETPLLPHKTSP HLQEQFIQYHMAFTSNTEETRISFLHQPQANSELL" gene 1253110..1255731 /locus_tag="TCM_021799" /note="dbxref CacaoGD:Thecc1EG021799" mRNA join(1253110..1253709,1255277..1255731) /locus_tag="TCM_021799" /product="RING/FYVE/PHD zinc finger superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g17130.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042630t1" /inference="similar to AA sequence:Phytozome:Glyma07g17130.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13119t1" CDS join(1253261..1253709,1255277..1255517) /locus_tag="TCM_021799" /note="paralog of Thecc1EG042630t1" /codon_start=1 /product="RING/FYVE/PHD zinc finger superfamily protein" /protein_id="EOY07339.1" /db_xref="Phytozome:Glyma07g17130.1" /db_xref="TAIR:AT5G05830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HC75" /translation="MSSLEMSQIDLEQGTHSRNGSDVSAGEASVCFSDADEGSCYSQF YSTTGGSYDEYSFACASDGQIGDVSDSRRVSSVSDCSVEVEIQRGVPEIKVHLAKVEK DCRICHLGLESNSHESGVPIELGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICHSIAR NVVGVTEIESTEQSNEANSSTTTAAVSGAAPHSDSRSFWHGHRFLNFLLACMVFAFFI SWLFHFNVPSS" gene complement(1255879..1259837) /locus_tag="TCM_021800" /note="dbxref CacaoGD:Thecc1EG021800" mRNA complement(join(1255879..1256864,1257146..1257259, 1257643..1257807,1258042..1258230,1258586..1258671, 1258764..1258869,1258955..1259088,1259175..1259310, 1259396..1259616,1259704..1259837)) /locus_tag="TCM_021800" /product="Kinase protein with tetratricopeptide repeat domain" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s09500.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041709t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s09500.2" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g898t1" CDS complement(join(1256622..1256864,1257146..1257259, 1257643..1257807,1258042..1258230,1258586..1258671, 1258764..1258869,1258955..1259088,1259175..1259310, 1259396..1259616,1259704..1259785)) /locus_tag="TCM_021800" /note="paralog of Thecc1EG041709t1" /codon_start=1 /product="Kinase protein with tetratricopeptide repeat domain" /protein_id="EOY07340.1" /db_xref="Phytozome:POPTR_0006s09500.2" /db_xref="TAIR:AT3G54030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FHD7" /translation="MGARCSKFSICWFQSHLKASVLESSDLENGGKGEKNTWPSFSEF SLEQLKAATCGFSSDNIVSEHGEKAPNVVFKGKLDNDRWVAVKRFNKFAWPDSRQFLE EARAVGSLRSERLANLIGCCYEGEERLLVAEFMPIETLAKHLFHWENQPMKWAMRLRV ALYLAQALEYCSSQGRALYHDLNAYRILFDNDGNPRLSCFGLMKNSRDGKSYSTNLAF TPPEYLRTGRVTPESVVYSFGTLMLDLMSGKHIPPSHALDLIRSKNFLMLMDSALEGH FSNDDGTELVRLASRCLQYEARERPNAKSLVTSLLSLQKEAEVPSYVLMGIPQGTASP KQPLSLTPFGEACLRLDLTAIHEILEKMGYKDDEGIANELSFQMWTSQMQETLNSKKH GDTAFRAKDFASAVDCYTQFIDVGTMVSPTVYARRCLSYLMNDRPQEALGDAMQAQAV SPEWPTALYLQAACLFSLGMESDGQETLKDSTSLEAKRSKN" gene complement(1263009..1266713) /locus_tag="TCM_021801" /note="dbxref CacaoGD:Thecc1EG021801" mRNA complement(join(1263009..1263339,1263439..1263566, 1263669..1263715,1263802..1263897,1264128..1264230, 1264338..1264398,1264570..1264641,1265181..1265261, 1265440..1265508,1265610..1265696,1266201..1266290, 1266398..1266713)) /locus_tag="TCM_021801" /product="Inositol phosphorylceramide synthase 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034044001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041710t1" /inference="similar to AA sequence:Phytozome:GSVIVT01034044001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03709t00001" CDS complement(join(1263259..1263339,1263439..1263566, 1263669..1263715,1263802..1263897,1264128..1264230, 1264338..1264398,1264570..1264641,1265181..1265261, 1265440..1265508,1265610..1265696,1266201..1266290, 1266398..1266430)) /locus_tag="TCM_021801" /note="paralog of Thecc1EG041710t1" /codon_start=1 /product="Inositol phosphorylceramide synthase 1" /protein_id="EOY07341.1" /db_xref="Phytozome:GSVIVT01034044001" /db_xref="TAIR:AT3G54020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M325" /translation="MTLYIGREASKLWKRICAETTTEVNLLLDNWKYLLAGLIFQYIH GLAARGVHYLHQPGPTLQDLGFILLPELGQDKAYISETVFTFIFLSFVLWTFHPFIMK SKKIYTVLVWCRVLAFLVASQMLRIITFYSTQLPGPNYHCREGSKLARLPKPESVLEV LLINFPRGVIYGCGDLIFSSHMIFTLVFVLTYQKYGTRRFIKQFAWLVAIIQSFLIVA SRKHYTVDVVVAWYTVNLVVFFIDKKLPELPDRSNGSSPLLLPLSTKDKDSKTKEENH KLLNGNSIDPADWRPRTQVNGKTLEDANGIHVDTAMNGA" mobile_element complement(1269203..1269295) /note="source:scaffold_6_CACTA_0717 7077 7173" /mobile_element_type="transposon:TIR/CACTA" gene complement(1273157..1275567) /locus_tag="TCM_021802" /note="dbxref CacaoGD:Thecc1EG021802" mRNA complement(1273157..1275567) /locus_tag="TCM_021802" /product="Uncharacterized protein" /inference="similar to AA sequence:Phytozome:Glyma16g33430.1" /note="quality class is weak, express is weak, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.16 coverage" CDS complement(1273994..1275535) /locus_tag="TCM_021802" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07342.1" /db_xref="Phytozome:Glyma16g33430.1" /db_xref="TAIR:AT3G02645.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H612" /translation="MVFSESIISPCFPEENWVVEIKDILENNGEAKEVVVSVFEVPEQ LRAANPVAYAPQLLAFGPYHHFRPKLYQMQRFKVAAAVKAQKDWLVVDFQQLVAQIEG LEFLIRTCYQRHLNIHADTLAWILAIDGLSLLKVLHSALYYYKNLPGSFGKNPFAEFS ERTPDLDMILRDMLMLENQIPMIVLKAIAEKRPGSDNLQILVDFCETLSPLQLTFKPS TSEVVKHKHLLDLFYQMIICPKEVINTSSKEEKEDELQDSTMEIPSNPDCSVFKKLLA TLSKLQFRFAALPEKLMTLLLSSLELLGITPHDFFDRDRSWIPTASQLNNAGLKFSTC DGINHIKYDNQTLYLPVITLNSAPDPENILSSKLTSEVILRNLVAYESLSKDKSESLP FTRYTQLMNGIIDNDEDVNLLKKANVIKGDLYSVEIAGLFNGLSESIEPKDRDINIDE AITKVNRYYDNTLRVKTNKILKKYIYSSWRFLTFLASFLLLALLALETFCDFYTCRVM RFKAA" gene 1275971..1278053 /locus_tag="TCM_021803" /note="dbxref CacaoGD:Thecc1EG021803" mRNA join(1275971..1276315,1276603..1276774,1277286..1277885) /locus_tag="TCM_021803" /product="Nuclear transport factor 2 family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400035331" /inference="similar to AA sequence:Phytozome:POPTR_0016s09990.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Newbler:10:TSA:cgbaL_g15458t00001" mRNA join(1276180..1276315,1276603..1276774,1277286..1278053) /locus_tag="TCM_021803" /product="Nuclear transport factor 2 family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400035331" /inference="similar to AA sequence:Phytozome:POPTR_0016s09990.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Newbler:10:TSA:cgbaL_g15458t00001; alternateUTRof:Thecc1EG021803t1; inference alignment:Newbler:10:TSA:cgbaL_g15458t00001" CDS join(1276283..1276315,1276603..1276774,1277286..1277860) /locus_tag="TCM_021803" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Nuclear transport factor 2 family protein isoform 1" /protein_id="EOY07343.1" /db_xref="Phytozome:POPTR_0016s09990.1" /db_xref="TAIR:AT3G09250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SR38" /translation="MALQGSSFCYNVNVNCVPCSSTNSFRSLHCFSPPPPKRCHVVLA RTSTGNRTEFFAGPCLSKLPSGRPPPFRENSCMLSLIPCQAKSDDLEGTLSGESIILD EQTLQRDLQNAIEEENYAQAARIRDDLRVLHENSKASVLAANSRFYDAFRRGDLAAMQ NLWAKGDDVCCVHPGANGISGYDFVMESWEVVWMNYEFPLEIELKNVQVHVKGDAGYV TCMEFIKTKGSSWGGQFVTNVFERINGQWCICIHHASLVDL" CDS join(1276283..1276315,1276603..1276774,1277286..1277860) /locus_tag="TCM_021803" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Nuclear transport factor 2 family protein isoform 1" /protein_id="EOY07344.1" /db_xref="Phytozome:POPTR_0016s09990.1" /db_xref="TAIR:AT3G09250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SR38" /translation="MALQGSSFCYNVNVNCVPCSSTNSFRSLHCFSPPPPKRCHVVLA RTSTGNRTEFFAGPCLSKLPSGRPPPFRENSCMLSLIPCQAKSDDLEGTLSGESIILD EQTLQRDLQNAIEEENYAQAARIRDDLRVLHENSKASVLAANSRFYDAFRRGDLAAMQ NLWAKGDDVCCVHPGANGISGYDFVMESWEVVWMNYEFPLEIELKNVQVHVKGDAGYV TCMEFIKTKGSSWGGQFVTNVFERINGQWCICIHHASLVDL" mRNA join(1276631..1276774,1277281..1277881) /locus_tag="TCM_021803" /product="Nuclear transport factor 2 (NTF2) family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400035331" /inference="similar to AA sequence:ricco:28659.m000072" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc151t1; inference alignment:Newbler:10:TSA:cgbaL_g15458t00001" CDS join(1276743..1276774,1277281..1277860) /locus_tag="TCM_021803" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:28659.m000072" /codon_start=1 /product="Nuclear transport factor 2 (NTF2) family protein isoform 3" /protein_id="EOY07345.1" /db_xref="TAIR:AT3G09250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SR38" /translation="MSVQVAKWQTSAAPFRENSCMLSLIPCQAKSDDLEGTLSGESII LDEQTLQRDLQNAIEEENYAQAARIRDDLRVLHENSKASVLAANSRFYDAFRRGDLAA MQNLWAKGDDVCCVHPGANGISGYDFVMESWEVVWMNYEFPLEIELKNVQVHVKGDAG YVTCMEFIKTKGSSWGGQFVTNVFERINGQWCICIHHASLVDL" gene complement(1278234..1283269) /locus_tag="TCM_021804" /note="dbxref CacaoGD:Thecc1EG021804" mRNA complement(join(1278234..1279008,1279102..1281752, 1282783..1283269)) /locus_tag="TCM_021804" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s10000.1" /inference="similar to AA sequence:ricco:28659.m000073" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g912t1" CDS complement(join(1278709..1279008,1279102..1281714)) /locus_tag="TCM_021804" /note="dbxref ricco:28659.m000073" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07346.1" /db_xref="TAIR:AT5G01030.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HC71" /translation="MPFDRRKANEYVEPLRDMGFGSESKRSSNLQQNSKIVKEKTQLP QANLRLKSQGKLKGKNGIALPYGNLPGERGQNQIHSTLVETKSLGDCHGQPRKGKPTK EDELVKYMSNLPGYLQRVDIGENFQENALNVGVLDWARLEKWEHHQKRIPKITGNDVS STSTISLMKTNTKSSALSSAVPKDTAANKSKQHQQTCSSLNSSYKEGLPRGAKPSTLK VRHFQDIETASKSTLDQQKKTSKTYKSSGTTYSDAILDKGKKKELNQKITLEMGNMSS NMRNQGVSPLPKETVNVCDGGAKNRVEQRQEIDVNKKDLDLKNTSDVEASSSKFRHYG VSLGSRKKLDAEGDKTKETQGSEIDLAHQVSPGEHKNIVLLRPRSARNSFFEEPRERF DGTLNEANRNSFPCDFLQKVRSGELCSEVPHSCPLPSGVEMNPATDIMAQGLEPSSNA SHGSAFSNNSGNLRSEGKHSAENKIKSLDAHVETLKILEEEMAELATRKSRSSSPNRR FSFSLSRMSRSFSFKEGSTAPQLSSTYVSVKSGPVRSDSSGFLDDTIREKVNGHNRAR SSPLRRMLDPLLKSRGLHSFRFTDTVQPSKGSLNSSSARPVNTNESPQEEKFESSMIQ ALLQLTIKNGLPMFRFVVDNGSNMLATTMKSLASSAKGGSDQSYIFSSVSEIKKKSGS WISQGNKEKNCGYIYNIIGQMRISNSLISDLTAEDSCNQYPVVRESVLFSVEQRPADQ ASAKFTPNAELAAVVIKMPGESTDVQHSDKDITKKGFTDCLATDGCSCNPVENASFNS TTVILPGGVHSLPNKGIPSPLIDRWKSGGLCDCGGWDVGCKLRILSNQKRRCCKTSRT CQACLNPNRLDLYAQGEAQQNRPILNLVPHKNGIYAIEFSSSITALQAFFISVTAISC QKSSDLPEFGNLPEGKVIKETILNGSHGMENKPINVLRNMPAKYAPNPPHSPVGRA" mobile_element 1285384..1285466 /note="source:scaffold_2_CACTA_0248 14090 14168" /mobile_element_type="transposon:TIR/CACTA" gene 1286073..1292357 /locus_tag="TCM_021805" /note="dbxref CacaoGD:Thecc1EG021805" mRNA join(1286073..1286315,1286773..1287148,1287692..1288602, 1292191..1292357) /locus_tag="TCM_021805" /product="UDP-glucosyl transferase 85A3, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Sb02g033580.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021806t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s10010.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g03562t00001; inference alignment:Newbler:10:TSA:cgbaP2_g03562t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g984t1" mRNA join(1286302..1287148,1287692..1288910) /locus_tag="TCM_021805" /product="UDP-glucosyl transferase 85A3, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Sb02g033580.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021806t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s10010.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g984t1" CDS join(1286307..1286315,1286773..1287148,1287692..1288602, 1292191..1292241) /locus_tag="TCM_021805" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG021806t1" /codon_start=1 /product="UDP-glucosyl transferase 85A3, putative isoform 2" /protein_id="EOY07348.1" /db_xref="Phytozome:POPTR_0016s10010.1" /db_xref="TAIR:AT1G22380.1" /translation="MIQRIHDRLLSTDLLARYPEFQFLTIPDVVPRDRPRSGTMSPGD FLLAAGPVIKPALRQLFISLCKKKGRWQPATCIIEDGILSSSVIDVAEEFQVPVFAFR TSSACCIWTYFHVRKLVEEGDVPVVQDKDMDKPVTCIPGLENVVRRRDLPGIFRIERA DDPGLEFFINDQTLVMPRAFAIIINTFDGLEATMISKLASVFTKMYTVGPLHGLSNAR AKEETTSASSNSILWKEDRGCMFWLDSQPSRSVVFVSFGSFVGLTRDKMLEFGHGLVN SGYPFLWVIRPDSITGEVDPSLILGELKAMIEDNKGLMVSWAPQEEVLAHPAIGVFLT HSGWNSTLESVYAGVPMICWPAIGDQQINSRFVSDVWKIGLDMKDTCDRSTIEKMVRS LMEDKREEIMKSVNEIKKLAHETIKEGGSSFSNLEKLIDDIRLRSHLGHNNSEGKK" CDS join(1286638..1287148,1287692..1288647) /locus_tag="TCM_021805" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG021806t1" /codon_start=1 /product="UDP-glucosyl transferase 85A3, putative isoform 1" /protein_id="EOY07347.1" /db_xref="Phytozome:POPTR_0016s10010.1" /db_xref="TAIR:AT1G22380.1" /translation="MEQAEPQVPHVVFLPIPGLGHIKPMLKLAELLSRPSFQVTFINT QRIHDRLLSTDLLARYPEFQFLTIPDVVPRDRPRSGTMSPGDFLLAAGPVIKPALRQL FISLCKKKGRWQPATCIIEDGILSSSVIDVAEEFQVPVFAFRTSSACCIWTYFHVRKL VEEGDVPVVQDKDMDKPVTCIPGLENVVRRRDLPGIFRIERADDPGLEFFINDQTLVM PRAFAIIINTFDGLEATMISKLASVFTKMYTVGPLHGLSNARAKEETTSASSNSILWK EDRGCMFWLDSQPSRSVVFVSFGSFVGLTRDKMLEFGHGLVNSGYPFLWVIRPDSITG EVDPSLILGELKAMIEDNKGLMVSWAPQEEVLAHPAIGVFLTHSGWNSTLESVYAGVP MICWPAIGDQQINSRFVSDVWKIGLDMKDTCDRSTIEKMVRSLMEDKREEIMKSVNEI KKLAHETIKEGGSSFSNLEKLIDDIWSMSHFARKERSD" gene 1289597..1292846 /locus_tag="TCM_021806" /note="dbxref CacaoGD:Thecc1EG021806" mRNA join(1289597..1290831,1291283..>1292190) /locus_tag="TCM_021806" /product="UDP-glucosyl transferase 85A3, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s10010.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021805t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s10010.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is medium, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc845t6_C2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13129t2; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc759t8_C2" mRNA join(1289724..1290831,1291277..1292248,1292784..1292846) /locus_tag="TCM_021806" /product="UDP-glucosyl transferase 85A3, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s10010.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021805t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s10010.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13129t2" CDS join(1290306..1290831,1291277..1292241) /locus_tag="TCM_021806" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG021805t1" /codon_start=1 /product="UDP-glucosyl transferase 85A3, putative isoform 1" /protein_id="EOY07349.1" /db_xref="Phytozome:POPTR_0016s10010.1" /db_xref="TAIR:AT1G22380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6KI45" /translation="MEQTQPRVPHVVLLPFPSLGHIKPLLSLAELLSHASFQVTFLNP QQIHDRLLLSMDMPAFHRRHPEFEFLSMPDPVRRSSDRPRPGLFSLHDNILSLGSVIK PALGELLISFNRERGRRQPATCIIADGLLSSPVIDVAEQFEIPFFALRTSSACCIWAY FNPPKLVEEGDVPFQVADEDMDKLVTCIPGLENVVRRRDLPGIFRIERANDPALEYFI NDQTLVLPRASGLILNTFDELEAPVIAKLGSHFTKVYTVGPLHSLSTVRMKDLISVAS GENILWKEDTSCMTWLDSQLSKSVIFVSFGSVISFTRDQMFELWHGLVNCGKPFLWAI RQDSIIGEDGPSLILGKLKDMTGDKGLLVSWAPQELVLTHPAIGGFFTHSGWNSTLES IFAGVPMICWPAIGDQQMNSRFVSDVWKIGFDMKDSCDRSLIEKMVRDLMEDKREEIM KSVNEIKKLAHEAVKEGGSSFCNLDKLIDDIRLRSHLGHNNSEGKK" CDS join(1290306..1290831,1291283..>1292190) /locus_tag="TCM_021806" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG021805t1" /codon_start=1 /product="UDP-glucosyl transferase 85A3, putative isoform 2" /protein_id="EOY07350.1" /db_xref="Phytozome:POPTR_0016s10010.1" /db_xref="TAIR:AT1G22380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HNP0" /translation="MEQTQPRVPHVVLLPFPSLGHIKPLLSLAELLSHASFQVTFLNP QQIHDRLLLSMDMPAFHRRHPEFEFLSMPDPVRRSSDRPRPGLFSLHDNILSLGSVIK PALGELLISFNRERGRRQPATCIIADGLLSSPVIDVAEQFEIPFFALRTSSACCIWAY FNPPKLVEEGDVPFQDEDMDKLVTCIPGLENVVRRRDLPGIFRIERANDPALEYFIND QTLVLPRASGLILNTFDELEAPVIAKLGSHFTKVYTVGPLHSLSTVRMKDLISVASGE NILWKEDTSCMTWLDSQLSKSVIFVSFGSVISFTRDQMFELWHGLVNCGKPFLWAIRQ DSIIGEDGPSLILGKLKDMTGDKGLLVSWAPQELVLTHPAIGGFFTHSGWNSTLESIF AGVPMICWPAIGDQQMNSRFVSDVWKIGFDMKDSCDRSLIEKMVRDLMEDKREEIMKS VNEIKKLAHEAVKEGGSSFCNLDKLIDD" gene 1292424..1294589 /locus_tag="TCM_021807" /note="dbxref CacaoGD:Thecc1EG021807" mRNA join(1292424..1292924,1293011..1294589) /locus_tag="TCM_021807" /product="UDP-glucosyl transferase 85A3, putative" /inference="alignment:exonerate-protein:2:frave:gene18745" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021805t1" /inference="similar to AA sequence:frave:gene18747" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g984t2" CDS join(1292438..1292924,1293011..1293930) /locus_tag="TCM_021807" /note="dbxref frave:gene18747; paralog of Thecc1EG021805t1" /codon_start=1 /product="UDP-glucosyl transferase 85A3, putative" /protein_id="EOY07351.1" /db_xref="TAIR:AT1G22360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HNN8" /translation="MRQPHVLVLPFPAQGHIKPMLCLAELLCQAGLRVTFLNTHHSHR RLNNLQDLSTRFPTLHFESVSDGLPEDHPRNLVHFMHLVHSIKNVTKPLLRDLLTSLS LKTDIPPVSCIIADGILSFAIDVAEELQIKVIIFRTISSCCLWSYLCVPKLIQQGELQ FSDSDMGQKVSSVPEMKGSLRLHDRPYSFGLKQLEDPNFQFFVSETQAMTRASAVIFN TFDSLEAPVLSQMIPLLPKVYTIGPLHALRKARLGDLSQHSSFNGNLREADHNCITWL DSQPLRSVVYVSFGSHVVLTSEELLEFWHGLVNSGKRFLWVLRPDIIAGEKDHNQIIA REPDLGTKEKGLLVDWAPQEEVLAHPSVGGFLTHCGWNSTLESMVAGVPMLCWPKLPD QLVNSSCVSEVWKIGLDLKDMCDRSTVEKMVRALMEDRREEVMRSVDGISKLARESVS HGGSSSSNLEMLIQELET" gene 1294884..1297199 /locus_tag="TCM_021808" /note="dbxref CacaoGD:Thecc1EG021808" mRNA join(1294884..1295718,1295818..1297043) /locus_tag="TCM_021808" /product="UDP-glucosyl transferase 85A4-like protein isoform 1" /inference="alignment:exonerate- protein:2:frave:gene18747.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021805t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s10010.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g976t1" mRNA join(1295131..1295715,1295818..1297199) /locus_tag="TCM_021808" /product="UDP-Glycosyltransferase superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:frave:gene18747.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021805t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s10010.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1113t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2800t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g976t1" CDS join(1295196..1295718,1295818..1296767) /locus_tag="TCM_021808" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG021805t1" /codon_start=1 /product="UDP-glucosyl transferase 85A4-like protein isoform 1" /protein_id="EOY07352.1" /db_xref="Phytozome:POPTR_0016s10010.1" /db_xref="TAIR:AT1G78270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HNN8" /translation="MEQPEPQVPHVVFFPFPAHGHIKPMFRLAELLSHANFQVTFLNT QRNHDLLLLSSDIPAFRSRYPNFQLLSYPDKVPLGLDPHRRSEQGFVDLLLSTKAAAK PALSELLEKKTGRRPPTCIIADWAIMCSSAMDVAKEFGNIPVFAFQTACAHYMWMDFH LLKLIEEGEVPLRGYKDMDKPVTSISGLGMSVRRRDLSGFARFDTVCKQVIEISTNYG SSAVSQAYGVIHNTFDKLEAPVISKLSSFLPFKIYTIGPLHCLLNNYCIKDSNPLHSI NVTICKEDTNCITWLDSQPSGSVIFVSFGSLVSLSRSQILEIGQGLLNSCRPFLWVIL PNPIVGQQEDDSTPGQILMELENMSKEKGLIVSWAPQEKVLAHPAIGGFLTHSGWNST MESIYARVPMICWPTEADQLVNSRCVSELWRIGFDMKDTCDRSTVEKLVNDLMEDKRD EIMKSMDKITRQAEESVQEGGSSYCNLQRLITDIRSLIPT" CDS join(1295196..1295715,1295818..1296767) /locus_tag="TCM_021808" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG021805t1" /codon_start=1 /product="UDP-Glycosyltransferase superfamily protein isoform 2" /protein_id="EOY07353.1" /db_xref="Phytozome:POPTR_0016s10010.1" /db_xref="TAIR:AT1G22400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HNN8" /translation="MEQPEPQVPHVVFFPFPAHGHIKPMFRLAELLSHANFQVTFLNT QRNHDLLLLSSDIPAFRSRYPNFQLLSYPDKVPLGLDPHRRSEQGFVDLLLSTKAAAK PALSELLEKKTGRRPPTCIIADWAIMCSSAMDVAKEFGNIPVFAFQTACAHYMWMDFH LLKLIEEGEVPLRDKDMDKPVTSISGLGMSVRRRDLSGFARFDTVCKQVIEISTNYGS SAVSQAYGVIHNTFDKLEAPVISKLSSFLPFKIYTIGPLHCLLNNYCIKDSNPLHSIN VTICKEDTNCITWLDSQPSGSVIFVSFGSLVSLSRSQILEIGQGLLNSCRPFLWVILP NPIVGQQEDDSTPGQILMELENMSKEKGLIVSWAPQEKVLAHPAIGGFLTHSGWNSTM ESIYARVPMICWPTEADQLVNSRCVSELWRIGFDMKDTCDRSTVEKLVNDLMEDKRDE IMKSMDKITRQAEESVQEGGSSYCNLQRLITDIRSLIPT" gene complement(1297548..1298566) /locus_tag="TCM_021809" /note="dbxref CacaoGD:Thecc1EG021809" mRNA complement(1297548..1298566) /locus_tag="TCM_021809" /product="HSP20-like chaperones superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s09460.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041713t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400052808" /note="quality class is strong, express is medium, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1784t1" CDS complement(1297596..1298030) /locus_tag="TCM_021809" /note="paralog of Thecc1EG041713t1" /codon_start=1 /product="HSP20-like chaperones superfamily protein" /protein_id="EOY07354.1" /db_xref="Phytozome:PGSC0003DMP400052808" /db_xref="TAIR:AT1G53540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P19037" /translation="MSLIPSIFGNRIIFDPFSSDIWAPLNSNDEISTFANAQIDWKET PEAHVIRADLPGLKKEEVKVEIEEGRVLQLSGERSVEKEDKNEKWHRIERGRGKFLRR FRLPENAKVDEVKATMENGVLTMTMPKVEEKKTKLKSIDISN" gene 1298850..1299596 /locus_tag="TCM_021810" /note="dbxref CacaoGD:Thecc1EG021810" mRNA 1298850..1299596 /locus_tag="TCM_021810" /product="HSP20-like chaperones superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s09450.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041941t1" /inference="similar to AA sequence:Phytozome:Glyma13g24490.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc6261t1" CDS 1298949..1299413 /locus_tag="TCM_021810" /note="paralog of Thecc1EG041941t1" /codon_start=1 /product="HSP20-like chaperones superfamily protein, putative" /protein_id="EOY07355.1" /db_xref="Phytozome:Glyma13g24490.1" /db_xref="TAIR:AT1G07400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P12810" /translation="MSKVPNSYLHEPFYQQAWDPFQEFNFGGTLVAPRPAFSSGSPFA LANLDWKETPEAHVLKADLPGLNRNEVKLELEDGRILCISGDKSSEKEVKSDNWHRVE WSSGSFVRRFRLPEDAKVDKLTAYLENGVLTVTVPKKEARKGNQKRTIQILG" gene 1300801..1301571 /locus_tag="TCM_021811" /note="dbxref CacaoGD:Thecc1EG021811" mRNA 1300801..1301571 /locus_tag="TCM_021811" /product="Copper transporter, putative" /inference="alignment:exonerate- protein:2:ricco:28659.m000077" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041729t1" /inference="similar to AA sequence:ricco:28659.m000077" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g03221t00001" CDS 1300845..1301285 /locus_tag="TCM_021811" /note="dbxref ricco:28659.m000077; paralog of Thecc1EG041729t1" /codon_start=1 /product="Copper transporter, putative" /protein_id="EOY07356.1" /db_xref="TAIR:AT2G37925.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T7G3" /translation="MVNMVETTSAWNTTGLHVHRKSLLHMSFYWGHKSEILFSGWPGS NSGMYALALMFVFALAVTVEWLSYCSIIKPGANKVAAGFFQTAMHTVRAGLSYMVMLA VMSFNGGVFLSAVFGHAVGFLVFGSRAFRKSGGSEKKPDLPPRK" gene 1302224..1303282 /locus_tag="TCM_021812" /note="dbxref CacaoGD:Thecc1EG021812" mRNA join(1302224..1302301,1302377..1302436,1302540..1303282) /locus_tag="TCM_021812" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.95 coverage" CDS join(1302265..1302301,1302377..1302436,1302540..1303033) /locus_tag="TCM_021812" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07357.1" /translation="MCYLKFVSASGPQSKIKNAICVSPLSHLSPRNDEPDEPLRGKDL VNEVCNHTSDYKFCADTLLPSAASAPSATAGEIANTALRFAQVKATDARVLIASLLLK NSSSSTGRRLLQRCQLDNNKTIRELSSANDDLNSDSIDSMVEDLNNAANATRSCQDTI RETPFSSALDNKNIEVIKLCEIGVVSTKFFTIDDFT" gene 1304271..1304942 /locus_tag="TCM_021813" /note="dbxref CacaoGD:Thecc1EG021813" mRNA 1304271..1304942 /locus_tag="TCM_021813" /product="Copper transporter, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s09430.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021811t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s09430.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g10024t00001" CDS 1304336..1304794 /locus_tag="TCM_021813" /note="paralog of Thecc1EG021811t1" /codon_start=1 /product="Copper transporter, putative" /protein_id="EOY07358.1" /db_xref="Phytozome:POPTR_0006s09430.1" /db_xref="TAIR:AT2G26975.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HC67" /translation="MSDHGGMDMPTPAGSTSNGSMKSMDMHMSFYWGKDVIVLFSGWP ESNSGMYVLAIFFVLLLGAAIEVLSMLPPVKPGTKPVLGAFTQASVYAVRMCFAYMVM LSVMSYNLGIFIAAVAGHAIGFFIVKLRALQAKETTEQRYMSPDGIASKI" gene 1305755..1306448 /locus_tag="TCM_021814" /note="dbxref CacaoGD:Thecc1EG021814" mRNA 1305755..1306448 /locus_tag="TCM_021814" /product="Nucleic acid-binding, OB-fold-like protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s23460.1" /inference="similar to AA sequence:frave:gene20326" /note="quality class is strong, express is medium, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g16240t00001" gene complement(1305946..1312761) /locus_tag="TCM_021815" /note="dbxref CacaoGD:Thecc1EG021815" mRNA complement(join(1305946..1306886,1306982..1307053, 1307140..1307241,1307619..1307696,1307826..1307894, 1308255..1308311,1308519..1308578,1308770..1308839, 1308922..1309019,1309211..1309359,1309784..1309841, 1309935..1310093,1310509..1310593,1310700..1310758, 1311045..1311077,1311313..1311435,1311567..1311664, 1311866..1311935,1312078..1312162,1312257..1312336, 1312579..1312666)) /locus_tag="TCM_021815" /product="FKBP-type peptidyl-prolyl cis-trans isomerase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034052001" /inference="similar to AA sequence:Phytozome:GSVIVT01034052001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01548t00002; inference alignment:Newbler:10:TSA:cgbaB_g01548t00002" CDS 1305949..1306422 /locus_tag="TCM_021814" /note="dbxref frave:gene20326" /codon_start=1 /product="Nucleic acid-binding, OB-fold-like protein, putative" /protein_id="EOY07359.1" /db_xref="TAIR:AT1G07130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H8B6" /translation="MDQQALHNTHVKLLGFDLLSLTPSPNNSSTFYLKGNPISRAEIV GVITSRDQKPNKFLKFTLDDGTANVTCVLWLNHLTSPYFSSRQPTTVRVISEAAKRFA SDAQVGKVARVRGRITSYRGKLQVTVSDVVIERDPNAEILHWLDCLSLARRRYGG" mobile_element 1306452..1306549 /note="source:scaffold_1_CACTA_0029 12309 12403" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(1306599..1306886,1306982..1307053, 1307140..1307241,1307619..1307696,1307826..1307894, 1308255..1308311,1308519..1308578,1308770..1308839, 1308922..1309019,1309211..1309359,1309784..1309841, 1309935..1310093,1310509..1310593,1310700..1310758, 1311045..1311077,1311313..1311435,1311567..1311664, 1311866..1311935,1312078..1312162,1312257..1312330)) /locus_tag="TCM_021815" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="FKBP-type peptidyl-prolyl cis-trans isomerase family protein isoform 1" /protein_id="EOY07360.1" /db_xref="Phytozome:GSVIVT01034052001" /db_xref="TAIR:AT3G54010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7DMA9" /translation="MAVEEDAEQSYLPQKKKSESDEDKRRKKIIPGSLMKALMRPGGG ESNPSDGDQVIYHCTVRTLDGVVIQSTRSENGGKGIPVRDVLGKSKMILGLLEGIPSM LKGEVSMFKMKPQMHYAEDDCPVPVPSNFPKDDELHFEIELIDFSKVKVVCDDLGVLK KVVDEGQGWESPREPYEVKAWISAKTGDGKLILSHTEGEPYFFTFGKSEVPKGLEIGI GTMARKEKAIIYVRNQYLTPSPLLPEIEDYEEVHFEVELDHFIQVRDMLGDGRLIKRR LQDGKGEFPMDCPLHDSLLRVHYRGMLLNEVKTVFYDTRVDNQGDPLEFSSGEGMVPE GFEMCVRLMLPGEIALVTCPPDYAYDKFSRPPNVPEGAHVQWEIELLGFEMPKDWTGL NFQSIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLREFNHVNPQTDEEGKVFLDTRN LLHLNVALCFLKMGECRKSIEACNKVLDATPVHAKALYRRGMAYMAAGDFEEARSDFQ MMIKVDKSAEPDATAALAKLKKQEQEVETKARKQFKGLFDKKPGEIAEAQVEDRGGDQ ASGSENQKNSEESSSSSSDGVDESQDVHRAAAGQPRLGWLYNLWPPGGRVLSALGLQR CTIL" mRNA complement(join(1307215..1307696,1307826..1307894, 1308255..1308311,1308519..1308578,1308770..1308839, 1308922..1309019,1309211..1309359,1309784..1309841, 1309935..1310093,1310509..1310593,1310700..1310758, 1311045..1311077,1311313..1311435,1311567..1311664, 1311866..1311935,1312078..1312162,1312257..1312336, 1312579..1312761)) /locus_tag="TCM_021815" /product="FKBP-type peptidyl-prolyl cis-trans isomerase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034052001" /inference="similar to AA sequence:Phytozome:GSVIVT01034052001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc189t10; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc189t11; inference alignment:Newbler:10:TSA:cgbaB_g01548t00002" CDS complement(join(1307511..1307696,1307826..1307894, 1308255..1308311,1308519..1308578,1308770..1308839, 1308922..1309019,1309211..1309359,1309784..1309841, 1309935..1310093,1310509..1310593,1310700..1310758, 1311045..1311077,1311313..1311435,1311567..1311664, 1311866..1311935,1312078..1312162,1312257..1312330)) /locus_tag="TCM_021815" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="FKBP-type peptidyl-prolyl cis-trans isomerase family protein isoform 2" /protein_id="EOY07361.1" /db_xref="Phytozome:GSVIVT01034052001" /db_xref="TAIR:AT3G54010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7DMA9" /translation="MAVEEDAEQSYLPQKKKSESDEDKRRKKIIPGSLMKALMRPGGG ESNPSDGDQVIYHCTVRTLDGVVIQSTRSENGGKGIPVRDVLGKSKMILGLLEGIPSM LKGEVSMFKMKPQMHYAEDDCPVPVPSNFPKDDELHFEIELIDFSKVKVVCDDLGVLK KVVDEGQGWESPREPYEVKAWISAKTGDGKLILSHTEGEPYFFTFGKSEVPKGLEIGI GTMARKEKAIIYVRNQYLTPSPLLPEIEDYEEVHFEVELDHFIQVRDMLGDGRLIKRR LQDGKGEFPMDCPLHDSLLRVHYRGMLLNEVKTVFYDTRVDNQGDPLEFSSGEGMVPE GFEMCVRLMLPGEIALVTCPPDYAYDKFSRPPNVPEGAHVQWEIELLGFEMPKDWTGL NFQSIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLREFNHVNPQTDEEGKVFLDTRN LLHLNVALCFLKMGECRKSIEACNKVCNDFKLEPSLFSLFNGKMKFLMILLVFMRKDT SI" mobile_element 1310187..1310286 /note="source:CACAO_Again_on_E207_scaffold_9 307 405" /mobile_element_type="transposon:TIR/hAT" mobile_element 1310198..1310291 /note="source:CACAO_M_S_E16386_F9_scaffold_2 2050 2142" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(1316289..1318686) /locus_tag="TCM_021816" /note="dbxref CacaoGD:Thecc1EG021816" mRNA complement(join(1316289..1317015,1317102..1317221, 1317315..1317627,1317728..1318039,1318137..1318686)) /locus_tag="TCM_021816" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034054001" /inference="similar to AA sequence:Phytozome:POPTR_0016s10060.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1168t1" CDS complement(join(1316801..1317015,1317102..1317221, 1317315..1317627,1317728..1318039,1318137..1318490)) /locus_tag="TCM_021816" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07362.1" /db_xref="Phytozome:POPTR_0016s10060.1" /db_xref="TAIR:AT3G54000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AD59" /translation="MADVLDDGEFWLPPEFLTDDDLFLDNSKAKNNHKNPKDGFGLEL DGSKSLFPYEFRHGFGSFGFSSDLSSPIESVVGSTETESDEEDYLAGLTRQMAHSTLE DGFRRNDRVFGSENSKGWILSRSPQSTLCAVGSGCGCKQGSSRGSPNSQSRVSSPPGT WDLLYAAAGEVARMRMNEESYGGFNNRSLLGPPARKPSPNLDVPGYYPPHQSLSHQKL QATQFQQLKQEQLMKQQNASVWGGQKQQHQHHHHVVQNRGRNGNSNRPLGLSPSAWPP LQQQQQPQTQNGSGMRAVFLGNPTAKRECAGTGVFLPRRIGTPAETRKKPACSTVLLP ARVVQALNLNLDEIGAQPQLHPRFNASFTADSGCCFEASKWWECLFKSKATQFQATAR DEPRSPVTAGVDILTQLCFCWSTNSAGSFFLFFFLAFLFRKWEGF" mobile_element complement(1318347..1318454) /note="source:MITE_Unknown_5_4 1239 1330" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(1319547..1319781) /note="source:scaffold_4_CACTA_0482 5964 6227" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1319801..1319890) /note="source:CACAO_M_S_E66867_F2_scaffold_6 478 568" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1325572..1325651 /note="source:scaffold_7_CACTA_0789 1903 1990" /mobile_element_type="transposon:TIR/CACTA" gene 1331113..>1337099 /locus_tag="TCM_021817" /note="dbxref CacaoGD:Thecc1EG021817" mRNA join(1331113..1331520,1331622..1331731,1331830..1331951, 1337034..>1337099) /locus_tag="TCM_021817" /product="Adenine nucleotide alpha hydrolases-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g26300.1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g16950.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041733t1" /inference="similar to AA sequence:Phytozome:Glyma03g16510.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1291t2; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc565t13; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc10594t1" mRNA join(1331242..1331520,1331622..1331731,1331830..1331951, 1332045..1332372) /locus_tag="TCM_021817" /product="Adenine nucleotide alpha hydrolases-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g26300.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041733t1" /inference="similar to AA sequence:Phytozome:Glyma03g16510.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc565t13" CDS join(1331346..1331520,1331622..1331731,1331830..1331951, 1337034..>1337097) /locus_tag="TCM_021817" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG041733t1" /codon_start=1 /product="Adenine nucleotide alpha hydrolases-like superfamily protein isoform 2" /protein_id="EOY07364.1" /db_xref="Phytozome:Glyma03g16510.1" /db_xref="TAIR:AT3G53990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6SZP4" /translation="MAKDRKIGVAMDFSPSSKNALQWAVDNLADKGDTLYIIHINANS LDESHNALWAKSGSPLIPLTEFREPEIMKKYDVKPDIEVLDMLDTASRQKEIHIVTKL YWGGDAREKILDAVEGLKLDSLVMGSRGLGTVQRIILGSVSNYVMTHAPCPVTIV" CDS join(1331346..1331520,1331622..1331731,1331830..1331951, 1332045..1332135) /locus_tag="TCM_021817" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG041733t1" /codon_start=1 /product="Adenine nucleotide alpha hydrolases-like superfamily protein isoform 1" /protein_id="EOY07363.1" /db_xref="Phytozome:Glyma03g16510.1" /db_xref="TAIR:AT3G53990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6SZP4" /translation="MAKDRKIGVAMDFSPSSKNALQWAVDNLADKGDTLYIIHINANS LDESHNALWAKSGSPLIPLTEFREPEIMKKYDVKPDIEVLDMLDTASRQKEIHIVTKL YWGGDAREKILDAVEGLKLDSLVMGSRGLGTVQRIILGSVSNYVMTHASCPVTIVKES SSMKH" gene complement(1332726..1334020) /locus_tag="TCM_021818" /note="dbxref CacaoGD:Thecc1EG021818" mRNA complement(join(1332726..1333270,1333514..1334020)) /locus_tag="TCM_021818" /product="Tau class glutathione transferase GSTU45" /inference="alignment:exonerate-protein:2:frave:gene18732" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021820t1" /inference="similar to AA sequence:frave:gene18732" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Newbler:10:TSA:cgbaL_g04423t00001" CDS complement(join(1332899..1333270,1333514..1333828)) /locus_tag="TCM_021818" /note="dbxref frave:gene18732; paralog of Thecc1EG021820t1" /codon_start=1 /product="Tau class glutathione transferase GSTU45" /protein_id="EOY07365.1" /db_xref="TAIR:AT3G09270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D2WL57" /translation="MAEEVKVFGAWGSPFSRRVELALQLKGVQYEYIEEDVLKNKSPL LLKYNPVHKKIPVLLHNGKPIAESLVILEYIEETWKGNPILPEDPYDKAMARFWANFV DEKCLPVLRKAGWSQESEREKVVEEACECLKTLESALRGKRFFGGDTVGMVDIAANFI GYWLRVIQEATGMEVLSAEKFPELFKWTDEFVSCSIVKGSLPPRDKLLAFVKARIAAG MDQAPTNASK" mobile_element 1334172..1334456 /note="source:CACAO_on_E378_scaffold_1 3 292" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 1336088..1339548 /locus_tag="TCM_021819" /note="dbxref CacaoGD:Thecc1EG021819" mRNA join(1336088..1336503,1336609..1336718,1336819..1336940, 1337034..1337101,1337564..1337603,1337685..1337817, 1337896..1338054,1338351..1339548) /locus_tag="TCM_021819" /product="Adenine nucleotide alpha hydrolases-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g16950.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031632t1" /inference="similar to AA sequence:Phytozome:Glyma03g16510.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.10 coverage" CDS join(1336461..1336503,1336609..1336718,1336819..1336940, 1337034..1337101,1337564..1337603,1337685..1337817, 1337896..1338054,1338351..1338980) /locus_tag="TCM_021819" /note="paralog of Thecc1EG031632t1" /codon_start=1 /product="Adenine nucleotide alpha hydrolases-like superfamily protein" /protein_id="EOY07366.1" /db_xref="Phytozome:Glyma03g16510.1" /db_xref="TAIR:AT3G53990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6SZP4" /translation="MSLTMLSGLNPVLVTLIPLTEFREPEIMKKYDVKPDIEVLDMLD TASRQKEIHIVTKLFWGEDAREKILDAIEDLKLDSLVMGSRGLGTVQRIILGSVSNYV MTHAPCPVTIVNSNFHNKLASELRVRFTQWQRMMKDLLVQIGLMRPLLGKEEGQPNDM KDVEWAELEQRCVKLEKIYLAKSLSNKLQLRRKLYRLKMEENGDLMKHMNEFNGIIDQ LKKVDVKGLSYKRDESNENKGECTFVAEGDNCDVLTISENMDANSDWYLDFASATHIC YQKNCFDLLQEGVTGNLTLGNKSIVKVMGLVVVKIKMFDGVVRSLGGVAYVPKMHKNL ISLSLLDSKGYGYSACDGVVKVTQGDMVLMRGNLHNGLYHLECEASKGWEQCTGDGSY QSEISLAEEVMKDSHGVDDGERTKNLTNSELEGSLRSLSEVN" mobile_element 1337101..1339690 /note="source:CACAO_M_S_E52005_F74_scaffold_5 1 2590" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(1340243..1341552) /locus_tag="TCM_021820" /note="dbxref CacaoGD:Thecc1EG021820" mRNA complement(join(1340243..1340852,1341095..1341552)) /locus_tag="TCM_021820" /product="Tau class glutathione transferase GSTU45" /inference="alignment:exonerate- protein:2:frave:gene18732.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021818t1" /inference="similar to AA sequence:Phytozome:Glyma03g16600.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00782t00001" CDS complement(join(1340505..1340852,1341095..1341409)) /locus_tag="TCM_021820" /note="paralog of Thecc1EG021818t1" /codon_start=1 /product="Tau class glutathione transferase GSTU45" /protein_id="EOY07367.1" /db_xref="Phytozome:Glyma03g16600.1" /db_xref="TAIR:AT3G09270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D2WL57" /translation="MAEEVKVFGAWGSPFSRRVELALQLKGVQYEYIEEDVHKNKSPL LLKYNPVHKKVPVLLHNGKPIAESLVILEYIEETWKGNPILPEDPYDRAMARFWAKFI DEKCLPAIWKAGWSPESEREKPVEEACECLKTLESALGGKRFFGGDKVGMVDIAANFI GYWLRLIQEVTGMELLSAEKFPELFKWTDEFVSCSVVKGSLPPRDKLLAFFKARIAET MD" gene complement(1342484..1343537) /locus_tag="TCM_021821" /note="dbxref CacaoGD:Thecc1EG021821" mRNA complement(join(1342484..1342990,1343103..1343537)) /locus_tag="TCM_021821" /product="Tau class glutathione transferase GSTU45" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g16810.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021820t1" /inference="similar to AA sequence:frave:gene18732" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc8332t1" CDS complement(join(1342637..1342990,1343103..1343423)) /locus_tag="TCM_021821" /note="dbxref frave:gene18732; paralog of Thecc1EG021820t1" /codon_start=1 /product="Tau class glutathione transferase GSTU45" /protein_id="EOY07368.1" /db_xref="TAIR:AT3G09270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D2WL57" /translation="MAEEVKLFGAWGSPFSRRVEIALELKGIPFEYIEENVSDDKFKS PLLLKYNPIHKKVPVLLHNGKPVLESLIILEYVDETWKDNPILPEDPHERTMARFWAR FIDEKCMPPVWKALLGTGEEREKALEEVRECLKTLEGVLNGKRFFGGETIGLLDIAAN FIAFWLRVIQEVSGLEFLTADKCPVLIKWCDEFVSCNPVKEHLPPRDKLIAFMKNWLS GDGWTD" gene 1345011..1360806 /locus_tag="TCM_021822" /note="dbxref CacaoGD:Thecc1EG021822" mRNA join(1345011..1345459,1360642..1360806) /locus_tag="TCM_021822" /product="Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT3G53980.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021824t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s06210.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1130t1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1130t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13133t1" mRNA join(1345083..1345459,1345564..1345725) /locus_tag="TCM_021822" /product="Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT3G53980.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021824t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s06210.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13133t1" CDS join(1345120..1345459,1360642..1360652) /locus_tag="TCM_021822" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG021824t1" /codon_start=1 /product="Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein isoform 2" /protein_id="EOY07370.1" /db_xref="Phytozome:POPTR_0008s06210.1" /db_xref="TAIR:AT3G53980.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M329" /translation="MAAALKFVCLLGLIVLVSIVGLERVDAAGECGKSSPDNEAIKLA PCAEAAQDQNAAVSASCCDQVRKIGRSPSCLCAVMLSNTAKASGIKPEIAITIPKRCN IANRPVGYKCGRIR" CDS join(1345120..1345459,1345564..1345580) /locus_tag="TCM_021822" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG021824t1" /codon_start=1 /product="Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein isoform 1" /protein_id="EOY07369.1" /db_xref="Phytozome:POPTR_0008s06210.1" /db_xref="TAIR:AT3G53980.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M329" /translation="MAAALKFVCLLGLIVLVSIVGLERVDAAGECGKSSPDNEAIKLA PCAEAAQDQNAAVSASCCDQVRKIGRSPSCLCAVMLSNTAKASGIKPEIAITIPKRCN IANRPVGYKCGPYTLP" gene complement(1345727..1355759) /locus_tag="TCM_021823" /note="dbxref CacaoGD:Thecc1EG021823" mRNA complement(join(1345727..1346039,1348789..1348837, 1350206..1350524,1350606..1350637,1350728..1350805, 1351151..1351226,1351570..1351681,1351902..1352407, 1355695..1355759)) /locus_tag="TCM_021823" /product="Glutathione s-transferase-like protein" /inference="similar to AA sequence:ricco:29751.m001837" /note="quality class is medium, express is medium, homology is paralog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.33 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc4592t1" CDS complement(join(1345872..1346039,1348789..1348837, 1350206..1350524,1350606..1350637,1350728..1350805, 1351151..1351226,1351570..1351681,1351902..1352213)) /locus_tag="TCM_021823" /note="dbxref ricco:29751.m001837" /codon_start=1 /product="Glutathione s-transferase-like protein" /protein_id="EOY07371.1" /db_xref="TAIR:AT3G09270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S3A4" /translation="MAEEVKVVDACGSPFICSVKLTLQLEGVQYEYIEEDVHKNKSPV LLKYNPVLKKVPVVIHNGKPIAKSLDILEYVEETWEGNHIWPEDPYDRAVARCCKLID EEVFLWCVCGACLRNGKQGEARRISEKSHWKMNPFILKSRIIWSLDNAYIHVRFPNLG KAQKKLSLVVPPVNPMGGSDRVPGPGAGMYPTRGDVGGGSMLLGPNDPRWLGGVGGEP GFTGAQPLALSLSLSLCVCSAYIILENLFWIGLFETGVFLLVHVLIHLAPLVFLVLSP IDLSGASKLDVSQLQFGPMGLILMYLSFQQYQLKVSLLLKVHLLIRKLIKVFPFQNCD PQIKAVSILSVGGTNALKWSFKKFWSLEETDIGSGQVLCNHMFIKVD" mobile_element complement(1346317..1346937) /note="source:CACAO_M_E4753_F17_scaffold_2 7194 7826" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1346393..1347267 /note="source:scaffold_2_CACTA_0244 12400 13335" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1346630..1347533) /note="source:scaffold_10_CACTA_0140 6108 7093" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1346938..1347079) /note="source:INTACT135F_F90_scaffold_2-int 13233 14004" /mobile_element_type="retrotransposon:LTR/Copia" gene 1355852..1362039 /locus_tag="TCM_021824" /note="dbxref CacaoGD:Thecc1EG021824" mRNA join(1355852..1357017,1357099..1357215,1357382..1357536, 1358045..1358119,1358199..1358489,1358572..1358928, 1359022..1359418,1360956..1361228,1361333..1362039) /locus_tag="TCM_021824" /product="RHO guanyl-nucleotide exchange factor 7" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034063001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042645t1" /inference="similar to AA sequence:frave:gene18730" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1160t1" CDS join(1356426..1357017,1357099..1357215,1357382..1357536, 1358045..1358119,1358199..1358489,1358572..1358928, 1359022..1359418,1360956..1361228,1361333..1361349) /locus_tag="TCM_021824" /note="dbxref frave:gene18730; paralog of Thecc1EG042645t1" /codon_start=1 /product="RHO guanyl-nucleotide exchange factor 7" /protein_id="EOY07372.1" /db_xref="TAIR:AT5G02010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHI9" /translation="MDDGAFTHQKQVDSTQQQHYQFKLCLPVPELKAKSFWVLKSVRS LCYRGLESNGCCLKRLEYSGMIVNNSVFCASPGFFEEEKAEMEGLVEKSEGFEDKNES FNENGVQMGTFAKLLEDKGRESSSSSDFLTSETTGHEEEHSHSSSEEESASPPSLGWP VQKNAETEDCSSSNCSEDGKKPPSDDRKLEKQGSTVSEIELMKERFAKLLLGEDMSGC GNGVCTALAISNAITNLCATLFGQIWRLEPLPVEKKAMWRREMEWLLSVSDHIVELIP SWQTFPDGSKLEVMTCRPRSDLYINLPALRKLDNMLLEILDSFVDTEFWYVDQGILAP EADGSTSFRKALQRQEEKWWLPVPRVPPGGLHENSRKQLQHKRDCTNQILKAAMAINS ITLADMEVPESYLESLPKNGRASLGDLIYRYISSDLFTPECLLDCLDLSSEHQAIEIA NRVEASIYLWRKKTNSKPVNNTTRSSSKSSWEMVKDLMVDAEKREILADRAESLLLCL KQRFPGLPQTTLDMSKIQYNKDVGKSILESYSRVLESLAFNIVARIDDLLYVDDLTKH SDQFSSLTRVGVIGQKSLSIPYSVPFSSTPYRTAFTTPNFSPAQLVSPAKGERSPYLT SSKFQQRGIGVKKVLTDYLSIDVRGKECSNSNEGTESERVDAAGECGKSSPDNEALKL APCAEAAQDQNAAVSASCCDQVRKIGRSPSCLCAVMLSNTAKASGIKPEIAITIPKRC NIANRPVGYKCGPYTLP" gene complement(1361664..1373648) /locus_tag="TCM_021825" /note="dbxref CacaoGD:Thecc1EG021825" mRNA complement(join(1361664..1361809,1362682..1362731, 1363343..1363391,1363508..1363568,1363729..1363904, 1364399..1364489,1365108..1365181,1369055..1369114, 1369216..1369281,1370866..1370927,1371041..1371118, 1371216..1371279,1371361..1371392,1371496..1371573, 1372421..1372510,1372626..1372775,1372894..1373065, 1373148..1373648)) /locus_tag="TCM_021825" /product="Proteasome inhibitor-related" /inference="alignment:exonerate- protein:2:ricco:27958.m000040" /inference="similar to AA sequence:Phytozome:GSVIVT01034068001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1228t3" CDS complement(join(1363375..1363391,1363508..1363568, 1363729..1363904,1364399..1364489,1365108..1365181, 1369055..1369114,1369216..1369281,1370866..1370927, 1371041..1371118,1371216..1371279,1371361..1371392, 1371496..1371573,1372421..1372510,1372626..1372775, 1372894..1373065,1373148..1373322)) /locus_tag="TCM_021825" /codon_start=1 /product="Proteasome inhibitor-related" /protein_id="EOY07373.1" /db_xref="Phytozome:GSVIVT01034068001" /db_xref="TAIR:AT3G53970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFZ6" /translation="MSNEKSVMAVIRAARPSFRNDHDKIAFAVHASFLSSGFVLTATG PPALADNALSSPSPDEVGIDNWNEFDDHYAFVYTNPEKGSKKVLVKCLVMNGKLLVDA FADGGSEPVHLEIDIDNYVGENGSGNFSAQYKNLEKMVSSLDKEVISKLYGKSSKSSS SSDPPSLETGEGSRRDVNDPGVRINEPAGPQPHPSGVVVPPIYPMGGSDLFPGPGAGM YPTRGDFGGGGMLLGPNDPRWFGGVGGEPGFPGAQPGVPPGARFDPYGPPGVPGFEPN RFVRNPRRPGGGTHPDLEHFGGGSVSASQVPLASEARPLSILPDQQSYSKIFATLGVV CKCCDGPGELFGSKESPSSSTGIFRSIFAPPSKVLGRESLRPDLMAKRQDSPNEAGNT KPGAPGNFSKELEAENQSMANRDMSSIYQEQRVQPCHLCSSIYYGGQDVYSHPQSNQG SGLNSVSKKDGGEDDSGSASRGNWWQGSLYY" gene 1364487..1364972 /locus_tag="TCM_021826" /note="dbxref CacaoGD:Thecc1EG021826" mRNA 1364487..1364972 /locus_tag="TCM_021826" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc2427t1" CDS 1364723..1364935 /locus_tag="TCM_021826" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07374.1" /translation="MSSLKRFKHQSRLYQLSLAVLFSPFTARDNLTFKICQKHFKSFA LINPLINLVTLNKRKFPIQKEKTKKQ" gene 1365724..1368046 /locus_tag="TCM_021827" /note="dbxref CacaoGD:Thecc1EG021827" mRNA join(1365724..1365972,1366478..1366722,1367960..1368046) /locus_tag="TCM_021827" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.31 coverage" CDS join(1365794..1365972,1366478..1366676) /locus_tag="TCM_021827" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07375.1" /translation="MPPGAITVYVGPGSKSRPVTATSTLVDNNNSPTPRSFSFPKSLA RVSISYRIDKVLKPYENFFLVMKRNGPHGKRGQGGAEGDKQEFQVEKGRRGQGGSCVD SCHCGSPHGLHVSNPEPHGVSSS" gene complement(1373758..1374609) /locus_tag="TCM_021829" /note="dbxref CacaoGD:Thecc1EG021829" mRNA complement(1373758..1374609) /locus_tag="TCM_021829" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s09330.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s09330.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1227t1" CDS complement(1374020..1374541) /locus_tag="TCM_021829" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07376.1" /db_xref="Phytozome:POPTR_0006s09330.1" /translation="MAQCFLLCLILVNTFVAVASENAQTMLRSSLADVQHPPAPAPYN NEKPTTAEAPTVRKLGKHQPKVVKTFGSAPASSPSQAPQPEKDMHRIGESPSTGQTAA TVERNNGENVSVEGQTIHLQKHHRSVDKSVAGGGVILGGLATTFLVAVICYIRATGRH KSETHQSTTETTN" gene 1375787..1378079 /locus_tag="TCM_021830" /note="dbxref CacaoGD:Thecc1EG021830" mRNA join(1375787..1375998,1376768..1378079) /locus_tag="TCM_021830" /product="Copper ion transmembrane transporters" /inference="alignment:exonerate- protein:2:TAIR:AT2G37920.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s09320.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaB_g10438t00001" mobile_element complement(1376825..1376901) /note="source:scaffold_1_CACTA_0032 2768 2844" /mobile_element_type="transposon:TIR/CACTA" CDS 1376932..1377873 /locus_tag="TCM_021830" /codon_start=1 /product="Copper ion transmembrane transporters" /protein_id="EOY07377.1" /db_xref="Phytozome:POPTR_0006s09320.1" /db_xref="TAIR:AT2G37920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HC56" /translation="MLFMDNPCSPKPQIQSCTMLQAAVANLFLDSLENPPRPQKISLF TPFFSPNSMSSILKMQLSIPATSQSLSFSKSLLFPTPLFLHTKLSSLSLHTPTRPNTV IRMGGGPRTYPGGVSKWQWKRMQAKKAKQLLKARLARERHIYEIRKRAELQAAVSELE RPWEVVEKAPNLFSVSADEQVKVLADRFQKPGGFDMWSNRDGPQLFDTVDGLPSARFF PKGVVHSVKPYLRSRESDENAKHLADNKSEETENEDGNSQRNGKRNGVKWRRKGMRRM LDAAGEGSFDEKRSNLKSEVYDVSLQRDGSYGINKKK" gene 1379882..1381136 /locus_tag="TCM_021831" /note="dbxref CacaoGD:Thecc1EG021831" mRNA join(1379882..1380131,1380359..1381136) /locus_tag="TCM_021831" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.46 coverage" CDS join(1379930..1380131,1380359..1380663) /locus_tag="TCM_021831" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07378.1" /translation="MCPHFTYQRSQPAPTLLAYIAHLFTPQARIVSGLSNSSSQHPPK SALVTLVACFLIYQRICFISLFLGVIMIMICHFHMSPTVIYLGLVYKVSQDLIIGSFL IEPLSMVSLVKILSRALLQVAASAGAMNHTPTTGRGLLQYHEILETPKFGVLWLARWL LDSILFKT" gene 1385392..1390470 /locus_tag="TCM_021832" /note="dbxref CacaoGD:Thecc1EG021832" mRNA join(1385392..1385479,1385600..1385764,1387592..1387809, 1388189..1388733,1388809..1389828) /locus_tag="TCM_021832" /product="Major facilitator superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s09310.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042662t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s09310.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g929t1; alternateUTRof:Thecc1EG021832t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g929t1" mRNA join(1385463..1385764,1387592..1387810,1388214..1388733, 1388809..>1389343) /locus_tag="TCM_021832" /product="Major facilitator superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s09310.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042662t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s09310.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is weak, protein is partial3; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1296t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g929t1" mRNA join(1385505..1385764,1387592..1387809,1388189..1388733, 1388809..1390470) /locus_tag="TCM_021832" /product="Major facilitator superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s09310.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042662t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s09310.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g929t1" CDS join(1385620..1385764,1387592..1387809,1388189..1388733, 1388809..1389670) /locus_tag="TCM_021832" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042662t1" /codon_start=1 /product="Major facilitator superfamily protein isoform 1" /protein_id="EOY07379.1" /db_xref="Phytozome:POPTR_0006s09310.1" /db_xref="TAIR:AT2G37900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AH99" /translation="MVLEQRKGKEMRDVGDEEKWVYDSSVDHKGRVPLRASTGVWKAS LFIIAIEFSERLSYFGIATSLIIYLTKVIHQDLKTAARSVNYWAGVTTLMPLLGGFIA DAYLGRFSTVLVSCIAYLLGLLLLTMSWFVPSLKACDADVCDEPRKIHEVVFFLAIYL VSIGTGGHKPSLESFGADQFDDDHSEERKKKMSFFNWWNFGLCCGLLFGVTVVVYVQD HVNWGAADIILALVMAWSLLIFIIGRPYYRYRVPSGSPLTPMLQVLVAAISKRKLPHP SNPADLYEVPTSQKAQGRLLCHTKKLKFLDRAAIIEDNENSIDKQNPWRLATVTKVEE MKLVLNMIPIWLATLPFGICVAQASTFFIKQGATMNRNIGNFVIPPASIFSLAAIGMI ISVTIYEKVLVPALRKTTGNERGIKILQRIGIGMAFSVATMVVAALVERKRLAAVKKD PVHGSLSMSVFWLAPQFVIIGAGDGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAA NFLSSLLITLVDHVTEKGGKSWFGKDLNSSRLDNFYWLLAIMTMANLCVYMFLAKRYS YKNIQSLAVANCNEEDDNAGSMA" CDS join(1385620..1385764,1387592..1387809,1388189..1388733, 1388809..1389670) /locus_tag="TCM_021832" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042662t1" /codon_start=1 /product="Major facilitator superfamily protein isoform 1" /protein_id="EOY07380.1" /db_xref="Phytozome:POPTR_0006s09310.1" /db_xref="TAIR:AT2G37900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AH99" /translation="MVLEQRKGKEMRDVGDEEKWVYDSSVDHKGRVPLRASTGVWKAS LFIIAIEFSERLSYFGIATSLIIYLTKVIHQDLKTAARSVNYWAGVTTLMPLLGGFIA DAYLGRFSTVLVSCIAYLLGLLLLTMSWFVPSLKACDADVCDEPRKIHEVVFFLAIYL VSIGTGGHKPSLESFGADQFDDDHSEERKKKMSFFNWWNFGLCCGLLFGVTVVVYVQD HVNWGAADIILALVMAWSLLIFIIGRPYYRYRVPSGSPLTPMLQVLVAAISKRKLPHP SNPADLYEVPTSQKAQGRLLCHTKKLKFLDRAAIIEDNENSIDKQNPWRLATVTKVEE MKLVLNMIPIWLATLPFGICVAQASTFFIKQGATMNRNIGNFVIPPASIFSLAAIGMI ISVTIYEKVLVPALRKTTGNERGIKILQRIGIGMAFSVATMVVAALVERKRLAAVKKD PVHGSLSMSVFWLAPQFVIIGAGDGFALVGLQEYFYDQVPDSMRSLGIAFYLSVIGAA NFLSSLLITLVDHVTEKGGKSWFGKDLNSSRLDNFYWLLAIMTMANLCVYMFLAKRYS YKNIQSLAVANCNEEDDNAGSMA" CDS join(1385620..1385764,1387592..1387810,1388214..1388733, 1388809..>1389343) /locus_tag="TCM_021832" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG042662t1" /codon_start=1 /product="Major facilitator superfamily protein isoform 3" /protein_id="EOY07381.1" /db_xref="Phytozome:POPTR_0006s09310.1" /db_xref="TAIR:AT2G37900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AH99" /translation="MVLEQRKGKEMRDVGDEEKWVYDSSVDHKGRVPLRASTGVWKAS LFIIAIEFSERLSYFGIATSLIIYLTKVIHQDLKTAARSVNYWAGVTTLMPLLGGFIA DAYLGRFSTVLVSCIAYLLGFVPSLKACDADVCDEPRKIHEVVFFLAIYLVSIGTGGH KPSLESFGADQFDDDHSEERKKKMSFFNWWNFGLCCGLLFGVTVVVYVQDHVNWGAAD IILALVMAWSLLIFIIGRPYYRYRVPSGSPLTPMLQVLVAAISKRKLPHPSNPADLYE VPTSQKAQGRLLCHTKKLKFLDRAAIIEDNENSIDKQNPWRLATVTKVEEMKLVLNMI PIWLATLPFGICVAQASTFFIKQGATMNRNIGNFVIPPASIFSLAAIGMIISVTIYEK VLVPALRKTTGNERGIKILQRIGIGMAFSVATMVVAALVERKRLAAVKKDPVHGSLSM SVFWLAPQFVIIGAGDGFALVGL" mobile_element 1386387..1386437 /note="source:CACAO_M_E11518_F369_scaffold_2 2044 2096" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(1389949..1404033) /locus_tag="TCM_021833" /note="dbxref CacaoGD:Thecc1EG021833" mRNA complement(join(1389949..1392444,1392550..1392634, 1393217..1393316,1395962..1396090,1396350..1396465, 1396555..1396636,1397734..1398106,1403541..1404033)) /locus_tag="TCM_021833" /product="Glyoxal oxidase-related protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s10240.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s10240.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.33 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13152t1" CDS complement(join(1390864..1392444,1392550..1392634, 1393217..1393316,1395962..1396090,1396350..1396465, 1396555..1396636,1397734..1397992)) /locus_tag="TCM_021833" /codon_start=1 /product="Glyoxal oxidase-related protein" /protein_id="EOY07382.1" /db_xref="Phytozome:POPTR_0016s10240.1" /db_xref="TAIR:AT3G53950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C8CPQ2" /translation="MGRSLLTENTKLTLWSHYIGSEHKIKKASKSLKNIVDFGGDDYD GLQQFPSNFFRNLNGLSSSPQSIKTLYFRCWRSLSSCILQNHARFHQAYELGAQACQA CHNPTQKFKVNRFWDLKALRLSSKSITTAPINCGKHVLNPIASFITEFLQGPVTFGPC PYLFSSFCYSNLIISIQTVPTVLRLLQPGTLVLPAEFYCLVIVLRFLPPTRINAMFRV KRISISISLIRTDSPRSDGWLLFSYTERSRTLYSRARFKVLIFTTLVAVRAQLPGTWE LLVPNAGIASMHTAVTRFNTVVLLDRTNIGPSRKMLPKGHCRIDPTDVILKKDCYAHS VVFDPQTNHIRPLMILTDTWCSSGQFLPDGTLLQTGGDLDGFKKIRKFEPCEPTGFCD WVELRDVELVNGRWYATNQILPDGTVIIVGGRGTNTVEYVPPRKNGAIELKFLADVED KQMDNLYPYVHLLPNGHLFIFANNKAVMYDHEVNKVIRDYPALSGGPRNYPSAGSSVM LALEGDFSTAVIVICGGAQYGAFIERSTDTPAHGSCGRIVATDPKPGWEMEDMPFGRI MGDMVMLPTGDSLIINGAQAGTQGFEMASNPCLYPLLYRPDQPAGLRFMTLNPGKVPR MYHSTANLLPDGRVLIAGSNPHYFYKFAVELPTELRLEAFWPEYLSPDRANIRPVIEG IPETVRYGEAFDVFVSVSLPVVGIVEVNFASAPFATHSFSQGQRLVKLNVAPSVPEDG RYRIKCTAPPSGAVAPPGYYMVFAVNQGVPSVARWVRVLPKIV" mobile_element 1402749..1402834 /note="source:scaffold_5_CACTA_0580 11357 11441" /mobile_element_type="transposon:TIR/CACTA" gene 1403541..1409393 /locus_tag="TCM_021834" /note="dbxref CacaoGD:Thecc1EG021834" mRNA join(1403541..1405136,1407802..1408169,1408270..1408334, 1408517..1409393) /locus_tag="TCM_021834" /product="POX family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:29973.m000390" /inference="similar to AA sequence:Phytozome:GSVIVT01034073001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b021130t1a2; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc769t5" mRNA join(1403541..1405136,1407802..1408169,1408270..1408330, 1408517..1409357) /locus_tag="TCM_021834" /product="POX family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29973.m000390" /inference="similar to AA sequence:ricco:29973.m000390" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc769t5; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc769t5" CDS join(1404147..1405136,1407802..1408169,1408270..1408330, 1408517..1409047) /locus_tag="TCM_021834" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29973.m000390" /codon_start=1 /product="POX family protein, putative isoform 1" /protein_id="EOY07383.1" /db_xref="TAIR:AT5G02030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZM8" /translation="MAEGFEPYHVPQQSRRDKLRIVAQNHPACVEATAATLSGCSALL PLYDPSLLSSDLLTCAANASATAGSHDFHHQTNHLSASASGKNSPVCVVKEEGVNFMG FVGGIVNASSSSSTSHHPYLDPQSSLPLNPSSIQDMNNNPFLYTPQNLQSLRDFDHSY NNGGEVVVYKPEALSLNHESSTTGQGLSLSLSSHNAHQNNLPLELNLQRFESAIYSDK VTASGYVVPGIVGASASTSNEVSRSSVPLGPFTGYASILKESRFMRPAQQLLEELCDV GRGSYAEKITPDSSLMEPPLENLSPAGIVDDPLGGGDGGESRRKKSRLISMLDEVYKR YKQYYQQMQAVVASFEYVAGLGNAAPYANLALKAMSKHFRCLKSAITNQLQFTNKAHG QISPGKEEGPRFGSTDRSLYSRPVHNAGFLEHQPVWRPQRGLPERAVTVLRAWLFEHF LHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQALKASQKE DRNANKSSDHLSSANSLASENPSTSTQRVQDTPSKRTRSELPDLPAGSEPLNLSYNSL SSHPHVGVGVSMAGGSGGVSLTLGLHQNNGIGLSEPFPINAAQRFGLGLEVSSEGYVI GGFEAQNRHFGRDVIGGQLLHDFVG" CDS join(1404147..1405136,1407802..1408169,1408270..1408334, 1408517..1408647) /locus_tag="TCM_021834" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="POX family protein, putative isoform 2" /protein_id="EOY07384.1" /db_xref="Phytozome:GSVIVT01034073001" /db_xref="TAIR:AT5G02030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZM8" /translation="MAEGFEPYHVPQQSRRDKLRIVAQNHPACVEATAATLSGCSALL PLYDPSLLSSDLLTCAANASATAGSHDFHHQTNHLSASASGKNSPVCVVKEEGVNFMG FVGGIVNASSSSSTSHHPYLDPQSSLPLNPSSIQDMNNNPFLYTPQNLQSLRDFDHSY NNGGEVVVYKPEALSLNHESSTTGQGLSLSLSSHNAHQNNLPLELNLQRFESAIYSDK VTASGYVVPGIVGASASTSNEVSRSSVPLGPFTGYASILKESRFMRPAQQLLEELCDV GRGSYAEKITPDSSLMEPPLENLSPAGIVDDPLGGGDGGESRRKKSRLISMLDEVYKR YKQYYQQMQAVVASFEYVAGLGNAAPYANLALKAMSKHFRCLKSAITNQLQFTNKAHG QISPGKEEGPRFGSTDRSLYSRPVHNAGFLEHQPVWRPQRGLPERAVTVLRAWLFEHF LHPYPTDTDKLMLAKQTGLSRSQVCVKLVYQCKSKALEAYGGRNTHARNTASSKSFAK GGQKCQQVK" gene 1409976..1411182 /locus_tag="TCM_021835" /note="dbxref CacaoGD:Thecc1EG021835" mRNA 1409976..1411182 /locus_tag="TCM_021835" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.54 coverage" CDS 1410018..1410230 /locus_tag="TCM_021835" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07385.1" /translation="MMATIVYAEGRQRPGAKGRPSISHFFFGAPEGGGRERERERGYF ALVQSSELETDRHRERERGKKSVVHC" mobile_element 1412136..1412307 /note="source:scaffold_4_CACTA_0483 981 1147" /mobile_element_type="transposon:TIR/CACTA" gene 1412658..1415923 /locus_tag="TCM_021836" /note="dbxref CacaoGD:Thecc1EG021836" mRNA join(1412658..1413183,1413798..1413974,1414076..1414225, 1414365..1414466,1414550..1414620,1414734..1414801, 1415178..1415923) /locus_tag="TCM_021836" /product="Mitochondrial substrate carrier family protein" /inference="alignment:exonerate-protein:2:frave:gene20864" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042664t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s10250.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07623t00001" CDS join(1412926..1413183,1413798..1413974,1414076..1414225, 1414365..1414466,1414550..1414620,1414734..1414801, 1415178..1415419) /locus_tag="TCM_021836" /note="paralog of Thecc1EG042664t1" /codon_start=1 /product="Mitochondrial substrate carrier family protein" /protein_id="EOY07386.1" /db_xref="Phytozome:POPTR_0016s10250.1" /db_xref="TAIR:AT3G53940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8W4M2" /translation="MNMEARVGVVVEGGQRALNSAHGTVVDAGARKFLQHQHQQQQHG HSSKQGLNPQIGTIQQLLAGGIAGAFSKTCTAPLARLTILFQVQGMHSDVSALSKASI WREASRIMNEEGVRAFWKGNMVTIAHRLPYSSVNFYAYERYKSFLQSILGLEDQRGNA SADLCVHFVGGGLAGMTAASATYPLDLVRTRLAAQRNAIYYRGIWHAFHTICRDEGIF GLYKGLGATLLGVGPSIAISFSVYESLRSYWQLQRPDDSTIMVSLACGSLSGIASSTA TFPIDLVRRRMQLEGAAGRARVYTTGLFGTFRHIIQSEGLRGLYRGILPEYYKVVPGV GIVFMTYETLKMLLSRIPTSY" gene 1416078..1417601 /locus_tag="TCM_021837" /note="dbxref CacaoGD:Thecc1EG021837" mRNA join(1416078..1416184,1416355..1416442,1416539..1417601) /locus_tag="TCM_021837" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.36 coverage" CDS 1416661..1417044 /locus_tag="TCM_021837" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07387.1" /translation="MTAHDIRSDIIFSREGNPGEGSNSLCLAAHHYKFCCDSIGGIQL RMVPRGEANSICLNTLSKTAAFGQLCRKTDQIKGPLRNIAMIPCRKTQRKQNEEDEQS KEMESTNWIPIFHSHIYVFHTLTIN" mobile_element complement(1416879..1416929) /note="source:INTACT318_F196_scaffold_2-int 528 622" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 1417082..1417176 /note="source:INTACT237_F179_scaffold_7-int 205 298" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(1418605..1419948) /locus_tag="TCM_021838" /note="dbxref CacaoGD:Thecc1EG021838" mRNA complement(join(1418605..1419064,1419717..1419948)) /locus_tag="TCM_021838" /product="RHO guanyl-nucleotide exchange factor 11" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s09290.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028757t1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc8189t1" CDS complement(join(1418861..1419064,1419717..1419854)) /locus_tag="TCM_021838" /note="paralog of Thecc1EG028757t1" /codon_start=1 /product="RHO guanyl-nucleotide exchange factor 11" /protein_id="EOY07388.1" /db_xref="TAIR:AT1G52240.2" /db_xref="UniProtKB/TrEMBL:UniRef50_C6T3J4" /translation="MLEGKAVVRETDMPEEMQSRVMELAYQALDLHEVSDCQSIAHYI KQKFDEAYGPAWHCVAGKDFGSCISHLCGSFIFFHVEMMEFLIFKDGSDFSETKEEAI GVLQEAKKSDS" gene complement(1420367..1421993) /locus_tag="TCM_021839" /note="dbxref CacaoGD:Thecc1EG021839" mRNA complement(join(1420367..1420616,1421203..1421993)) /locus_tag="TCM_021839" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s09280.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034800t1" /inference="similar to AA sequence:ricco:29973.m000394" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(join(1420559..1420616,1421203..1421915)) /locus_tag="TCM_021839" /note="dbxref ricco:29973.m000394; paralog of Thecc1EG034800t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07389.1" /db_xref="TAIR:AT2G37880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1PEW0" /translation="MTKFDALRRLIPCFYPTPTNSIATITPTKKRLSTSLRDDLDDPI TITNQDQDKDSQDSTNTTDLETTTLAPARPSRSMVIGTIFGQRKGHVWFCIQHDRLST KPSLLLELPIPTHQLVQEMRYGIVRIALECDHSELSACPLHSVPLWTMYCNGRKIGFA TKRKASHHNLLMLKTMQSTTVGAGVIPAGFGSSGSEEIMYMRANYEHVVGDADSESFH LVNPDECTGQELSVFLMRSSSNLLTIRSHHHSYSGYVF" gene complement(1422167..1425063) /locus_tag="TCM_021841" /note="dbxref CacaoGD:Thecc1EG021841" mRNA complement(join(1422167..1423993,1424357..1424574, 1424724..1425063)) /locus_tag="TCM_021841" /product="Major facilitator superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s10270.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013807t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s09270.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc3103t1" CDS complement(join(1422572..1423993,1424357..1424574, 1424724..1424853)) /locus_tag="TCM_021841" /note="paralog of Thecc1EG013807t1" /codon_start=1 /product="Major facilitator superfamily protein, putative" /protein_id="EOY07390.1" /db_xref="Phytozome:POPTR_0006s09270.1" /db_xref="TAIR:AT5G28470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q3E8X3" /translation="MTEKDMGDGSNSSLVEQNSQSPPLPSPSLRKEPGGWRAVKYILG NETFEKLASMSLVANMTVYLRTKYNMDGIAVVNVINIWSGCSNITAIAGALVSDTFLG RYRTLLFGSISSLLGMATMTLTAGVPKLRPPTCIDERNCIDPRFWQMGVLFAGLAFMA IGAGGIRPCNIAFGADQFDTTTKKGRAQLESFFNWWYFSFTLALVVALTAVVYIQTNI SWVIGYAIPTSCLFLSIIIFVTGHHAYIIMTPQGSVFVDMAKVITAAIRKHSLTPSGH SLYDPDLQKSGSKLSRTKRLSCLDKAAIIADSNELDDQGRPKNDWRLCSVEQVENLKM LLGMLPVWVAGIGCFITMDQQGTLGILQAIQTNKTLGSRFEVPPAWMGLSSMIALAIW VFIYEQIWVPQTRKRAGKAKRLSTAQRINIGIVIAIACCLLAAVTEKQRRKAALKQGS FESPMSILFLLPQFALSGLIEAFAAVALMEFLTTQLPESMRTVAGAIFFVSLSIASYL NSILVNIVYRITSKDGNPPWLGGHDLNKDRLEKFYCLVAGIGALNLLYFNLFARRFVT NAVVDKKGSEGEQNNEEKTLDVA" gene complement(1425253..1429575) /locus_tag="TCM_021842" /note="dbxref CacaoGD:Thecc1EG021842" mRNA complement(join(1425253..1425976,1426265..1426329, 1427112..1427191,1427277..1427346,1427498..1427718, 1428108..1428206,1428402..1428995,1429092..1429575)) /locus_tag="TCM_021842" /product="Reticulata-related 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034077001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041530t1" /inference="similar to AA sequence:Phytozome:Glyma18g41130.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07085t00001" mRNA complement(join(1425390..1425976,1426265..1426329, 1427112..1427191,1427277..1427346,1427498..1427678, 1428527..1429017,1429092..1429421)) /locus_tag="TCM_021842" /product="Reticulata-related 1 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034077001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041530t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s10280.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1537t2; inference alignment:Newbler:10:TSA:cgbaB_g07085t00001" mRNA complement(join(1425390..1425976,1426265..1426329, 1427111..1427191,1427277..1427349,1427498..1427718, 1428108..1428206,1428402..1428995,1429092..1429397)) /locus_tag="TCM_021842" /product="Reticulata-related 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034077001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041530t1" /inference="similar to AA sequence:Phytozome:Glyma18g41130.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1033t1; inference alignment:Newbler:10:TSA:cgbaB_g07085t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1521t9_C2" CDS complement(join(1425783..1425976,1426265..1426329, 1427112..1427191,1427277..1427346,1427498..1427678, 1428527..1428953)) /locus_tag="TCM_021842" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG041530t1" /codon_start=1 /product="Reticulata-related 1 isoform 3" /protein_id="EOY07393.1" /db_xref="Phytozome:POPTR_0016s10280.1" /db_xref="TAIR:AT2G37860.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GW60" /translation="MSGFGLLHLVSVKNDVFLSKLWGQDLSFVKSSSKRFLFSVKKKQ RLVILSLSQPPEAGPQSGAATTIVTKESSGNNIRKEEVRILGSGNEEAKIDEGNGGGF FDGNGGNGKFNNGGGRGGGGGGDGDDGEKGDPEEEEFGPIKKRGKDFWAEFELYVADL LVGVVVNIALVGMLAPYARIGQPSISTGFLGRMQHAYGALPSSVFEAERPGCRFTVKQ RIGTYFYKGVLYGAVGFACGIIGQGIANLIMTAKRSMKKSEEDIPVPPLVKSAALWGV FLAVSSNTRYQIINGLERLVEASPLAKQVPPVAMAFTVGVRFANNIYGGMQFVDWARW SGVQ" CDS complement(join(1425783..1425976,1426265..1426329, 1427112..1427191,1427277..1427346,1427498..1427718, 1428108..1428206,1428402..1428953)) /locus_tag="TCM_021842" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG041530t1" /codon_start=1 /product="Reticulata-related 1 isoform 1" /protein_id="EOY07391.1" /db_xref="Phytozome:Glyma18g41130.1" /db_xref="TAIR:AT2G37860.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GW60" /translation="MSGFGLLHLVSVKNDVFLSKLWGQDLSFVKSSSKRFLFSVKKKQ RLVILSLSQPPEAGPQSGAATTIVTKESSGNNIRKEEVRILGSGNEEAKIDEGNGGGF FDGNGGNGKFNNGGGRGGGGGGDGDDGEKGDPEEEEFGPIMKFEEVLKETEARGATLP ADMMEAAKSVGIRKLLLLRYLDLQGSSWPLGFAMRSWGMLRNRMLADPSFLFKIGTEI VIDSCCATLAEVQKRGKDFWAEFELYVADLLVGVVVNIALVGMLAPYARIGQPSISTG FLGRMQHAYGALPSSVFEAERPGCRFTVKQRIGTYFYKGVLYGAVGFACGIIGQGIAN LIMTAKRSMKKSEEDIPVPPLVKSAALWGVFLAVSSNTRYQIINGLERLVEASPLAKQ VPPVAMAFTVGVRFANNIYGGMQFVDWARWSGVQ" CDS complement(join(1425931..1425976,1426265..1426329, 1427111..1427191,1427277..1427349,1427498..1427718, 1428108..1428206,1428402..1428953)) /locus_tag="TCM_021842" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG041530t1" /codon_start=1 /product="Reticulata-related 1 isoform 2" /protein_id="EOY07392.1" /db_xref="Phytozome:Glyma18g41130.1" /db_xref="TAIR:AT2G37860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GW60" /translation="MSGFGLLHLVSVKNDVFLSKLWGQDLSFVKSSSKRFLFSVKKKQ RLVILSLSQPPEAGPQSGAATTIVTKESSGNNIRKEEVRILGSGNEEAKIDEGNGGGF FDGNGGNGKFNNGGGRGGGGGGDGDDGEKGDPEEEEFGPIMKFEEVLKETEARGATLP ADMMEAAKSVGIRKLLLLRYLDLQGSSWPLGFAMRSWGMLRNRMLADPSFLFKIGTEI VIDSCCATLAEVQKRGKDFWAEFELYVADLLVGVVVNIALVGMLAPYARIGQPSISTG FLGRMQHAYGALPSSSVFEAERPGCRFTVKQRIGTYFYKGVLYGAVGFACGIIGQGIA NLIMTAKREHEEVRRGHTCSTSCEECSFVGCFSCSFFQYSISDH" gene 1429693..1430354 /locus_tag="TCM_021843" /note="dbxref CacaoGD:Thecc1EG021843" mRNA 1429693..1430354 /locus_tag="TCM_021843" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.63 coverage" CDS 1429749..1430078 /locus_tag="TCM_021843" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07394.1" /translation="MLCFNLHFSSCKLSFWRFRSCALEEFFCLFIILIIIDVPLFFSN QQLFLLFRILTRPQSGAPLPGNVGNGSILPSFEHLVSLLKRAFGFHSDINLVPDIESV RTGLYHV" gene complement(1429837..1433256) /locus_tag="TCM_021844" /note="dbxref CacaoGD:Thecc1EG021844" mRNA complement(1429837..1433256) /locus_tag="TCM_021844" /product="S-locus lectin protein kinase family protein, putative" /inference="alignment:exonerate-protein:2:frave:gene18710" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021847t1" /inference="similar to AA sequence:frave:gene18710" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.37 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc8026t1" CDS complement(1430555..1432969) /locus_tag="TCM_021844" /note="dbxref frave:gene18710; paralog of Thecc1EG021847t1" /codon_start=1 /product="S-locus lectin protein kinase family protein, putative" /protein_id="EOY07395.1" /db_xref="TAIR:AT1G34300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFY5" /translation="MEIPLFYIILVLAPFLACALAGLPGLSTLSPGNSLAVENEDDYL VSPNGTFTGGFYKVGTNAYCFSIWFTNSADKTVVWMANRDRPVNGKQSRLTLHDSGNL VLLDADGSIVWSSNTVSSAAVEVRLLETGNLVLINREKNVVIWESFDFPTDTLLASQR FTRNTTLVSMRSRGTYLLGFYNLKFDDNNVLDLLYNGPLLSSVYWPNSVSTIFYNGRT PYNSSRIAVLNEIGSFKSSDNFRFNASDYGVGPKRRLTLDYDGILRLYSLDESTGSWK LSWRPGGLDSCLVQGLCGVNGICTYNPLPTCTCPTGFKRNNPSDWSKGCSPLFNLTCD PAELDFVELHKTDYYGFDLNTYQAGIALETCREKCLNDCKCKGFGYALDGKGQCFPKG ALRNGYRNPSNRMIMHIKVPKGMVKSIEETEAVTTNVLDCSTGQLVLENNSPDDRKTN KNGYMKYLIAFAASVAGIEMICTGLGWWYVFRNHADNEESVDAGYIALALGFKRFTYS ELKRATKNFKKEIGKGGFGTVYKGVLDDDRVVAVKRLEGVLQGHAQFWAEVSVIGKIN HRNLVKLWGFCAENEHKILVYEYVENGSLDKILFFDSPKVLGWDQRYNIAVGTAKGLA YLHEECLEWVLHCDVKPQNILIDSHFEPKVADFGMSMLFKDGNDRGFSKVRGTRGYLA PEWMMNLKIDAKADVYSYGIVLLELLTGKSASGLESATSLDTECSDLVELTTESIREE ELEKIIDPKLKDKYNKEQLKRMVEVALLCVKDDRSTRPAMSKVVELLMEMMSENQMKI LKRSTD" gene complement(1434089..1441173) /locus_tag="TCM_021845" /note="dbxref CacaoGD:Thecc1EG021845" mRNA complement(join(1434089..1434471,1438547..1440400, 1440498..1441173)) /locus_tag="TCM_021845" /product="S-locus lectin protein kinase family protein, putative" /inference="alignment:exonerate- protein:2:frave:gene18710.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021847t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s10340.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.27 coverage" gene complement(1434089..1437283) /locus_tag="TCM_021846" /note="dbxref CacaoGD:Thecc1EG021846" mRNA complement(1434089..1437283) /locus_tag="TCM_021846" /product="S-locus lectin protein kinase family protein, putative" /inference="alignment:exonerate-protein:2:frave:gene18710" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021847t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s10350.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.28 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc3069t1" CDS complement(join(1434329..1434471,1438547..1440400, 1440498..1440927)) /locus_tag="TCM_021845" /note="paralog of Thecc1EG021847t1" /codon_start=1 /product="S-locus lectin protein kinase family protein, putative" /protein_id="EOY07396.1" /db_xref="Phytozome:POPTR_0016s10340.1" /db_xref="TAIR:AT1G34300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFY5" /translation="MRSQRLTSQSSTLFLVAISLCFSLSSSRNPNILQRGSSLSVEDD SDMLTSADNTFTCGFYNVGENAYYFSIWFTNSKEKTVVWMANRDKPVNGKGSRVSLLR DGALVLKDVDGSTTWETNTSSTDVQKAELLDNGNLVLKDSTEEIMLLDISFFFFDTDN VLRLMYDGPDISSVYWPNIDLNVFQNGRTNYNSTKIAVLDDMGRFLSSDRLDFNASDW GFGIKRRLTIDYDGNLRLYSLNNRTGLWIISWKAVMQHCLVHGLCGRNGICVYTPETK CSCPPGYEMADPSNWSKGCKPMFSAICSHSQQVRFVKLQHVDFYGFDSSYTTEISFDS CKKKCLEDCQCQAFSYRLSGEGRCYTKVELFNGYQSPNFSGNIYLKLPLSIESSEDII LNGTNYICNSSESIMKIGISSMYGIGGKRMRWVYLYSFASAIGLIEMLLIVSSWWLLI RRRGVQAVVEEGYRVISRQFMKFTYMELKKATKNFKEELGKGASGAVFKGVLADERVV AVKKLGGAYQMEEVFQAEVSTIGKINHMNLVRMWGFCSESRHRLLVYEYVENKSLDKL LFTENFLGWKERFKVAVGTAKGLAYLHHECLEWVIHCDVKPENILLDGEFEPKISDFG LAKLSQRGHKNSEFSRIRGTKGYMAPEWALNLPITAKVDVYSYGVVILELVKGIRLSN WVVEDGEEQETELTRFVRVTKRKIQSEEAAWMEDAVDTRLNGEFSKIQAAKMVEIGIS CVEEDRSKRPTMDSIVQALMASKMVEIGISCVEEDRNKRPTMDSIVQALMACEDVSRI RTPDNLSVII" CDS complement(1434329..1436767) /locus_tag="TCM_021846" /note="paralog of Thecc1EG021847t1" /codon_start=1 /product="S-locus lectin protein kinase family protein, putative" /protein_id="EOY07397.1" /db_xref="Phytozome:POPTR_0016s10350.1" /db_xref="TAIR:AT1G34300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFY5" /translation="MSSQSVTSTSSTLFLVAIFVCFSLSSSRNPNFMQKGSSLSVEDN SDLLISADNTFACGFYSVGENAYCFSIWFTNSKEKTVVWMANRDKPVNGKGSRVSLLR DGAFVLTDVDGSTTWETNTGTTDVQKAELLDNGNLVLMDSSGKILWQSFDFPTDTLLP HQPITRSKKMISRLGRGNYSAGYFNFYFDNDNVLRLMYDGPDTSTLYWPDVDNTVTQN GRTGYNNTRIAVLDDMGRFLSSDSLQFNASDLGFGIKRRLTIDYDGNLRLYSLNNGTG LWTITWEALLQPCLVRGICGRNGICISTPKLPRCSCLPGYEMTDPSNWNAGCKPRFSI TCSQSQQLKFVEFQHMNFYGNDINIYSNKTLDWCKKKCKEDCQCQAFNYRLTGEVKCH LKAALFNGCKSSTVKVSTYLKLPLNIEISEYIILNDTNLTCSSRGYKVPVTGFSSTYM ARGKKLRWVYLYCFASAVGVIEFIFLASGWWFLFRRHDVLVAVEEGYRALTSQFRTFS YTELKKATKSFKEELGRGASGVVFKGVLADERVIAVKKLGDAYQMEEVFRAEVSTIGK INHMNLVRMWGFCSESKHRLLVYEYVENKSLDKLLFSENFLGWKERFKVALGTAKGLA YLHHECLEWVIHCDVKPENILLDGEFEPKISDFGLSKLFQKGFNNSKFSRIRGTKGYM APEWASNLPITAKVDVYSYGVVILELVKGIRLSNWVVEDGEDQEAELTRFVRVVKRKI QSEEATWIEDVVDTRLNGQFSRTQIAKMVEIGISCVEEDRNKRPTMDSIVQALMACED VSRIRTPDNLSVII" gene complement(1441220..1446133) /locus_tag="TCM_021847" /note="dbxref CacaoGD:Thecc1EG021847" mRNA complement(join(1441220..1441616,1442814..1446133)) /locus_tag="TCM_021847" /product="S-locus lectin protein kinase family protein, putative" /inference="alignment:exonerate- protein:2:frave:gene18710.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021845t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s10350.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.14 coverage" mobile_element complement(1442640..1442781) /note="source:scaffold_4_CACTA_0510 5730 5897" /mobile_element_type="transposon:TIR/CACTA" CDS complement(1443371..1445935) /locus_tag="TCM_021847" /note="paralog of Thecc1EG021845t1" /codon_start=1 /product="S-locus lectin protein kinase family protein, putative" /protein_id="EOY07398.1" /db_xref="Phytozome:POPTR_0016s10350.1" /db_xref="TAIR:AT2G19130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFY5" /translation="MEILLIFKKKKKATGVVDLMVFEELYSSHYALHIGVAFIQQWQK FLSPGDAVAMRSQSYSSLSSTLFLIVISVCFSLASSRNPNILPRGSSLSVEHDSDLLI SADNTFTCGFCSVGENAYCFSIWFTNSKEKTVAWMANRDKPVNGKGSRVSLQQDGAFV LKDVDGSTTWETNTSSTDVQKAELLDNGNLVLMDSSGKILWQSFDFPTDTLLPQQLFT KSKKLISKLRGGNYATGYFHFLFDNDNVLRLMYDGPDVSSVYWPNIDTNVFTNGRTNF NSTRIAILDDMGRFFSSDWMQFNASDSGSGIKRRLTMDHDGNLRLYSLNNGTGLWTVS WKAVMQQCLVHGLCGRNGMCIYAPEPKCSCPPGYEMDDPSNWNKGCKPRFTRSCSHSQ QVRFVKIQHADFYGFDSSSLTNISLESCQTKCLEDCRCQAFGYKLSGDAKCYIKIELF NGHQSASFPSDIYLKLPLSIETSEPIVLNDTNRICNSSESTITIGASSSMYGAGGKRV RWVYLYSFASVIGAIEMLFIMSSWWLLFRRRDVHAVVEEGYRVISSQFMKFTYIELKK ATKNFREELGQGASGAVFKGVLEDERVVAVKKLENAYQMEEVFRAEVSTIGKINHMNL VRMWGFCSESRHRLLVYEYVENKSLDKLLFAENILGWKERFKIALGSAKGLAYLHHEC LEWVIHCDVKPENILLDGDFEPKISDFGLAKLSQRGRKNSEFSRIRGTKGYMAPEWAL NLPITAKVDVYGYGVVILELVKGIRLSNWVEEDGEGQETELTRFVRVIKGKGQGEETA WIEDAVDTRLNGQFSRIQAAKMIEIGISCVEEDRNKRPTMDSIVQALMECEDVSRI" gene complement(1446215..1452897) /locus_tag="TCM_021848" /note="dbxref CacaoGD:Thecc1EG021848" mRNA complement(join(1446215..1447036,1447294..1447364, 1447577..1447868,1448210..1448571,1448712..1448833, 1448936..1449091,1449182..1449254,1449775..1449883, 1450043..1450123,1450211..1450304,1450578..1450642, 1450981..1451039,1451122..1451239,1452166..1452897)) /locus_tag="TCM_021848" /product="Kinase superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s10080.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005020t1" /inference="similar to AA sequence:frave:gene18376" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:PASA:2:TSA:puevd3b021144t1a2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc131t10" mRNA complement(join(1446215..1447036,1447294..1447364, 1447577..1447868,1448210..1448571,1448712..1449091, 1449182..1449254,1449775..1449883,1450043..1450123, 1450211..1450304,1450578..1450642,1450981..1451039, 1451122..1451239,1452166..1452897)) /locus_tag="TCM_021848" /product="Kinase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s10080.1" /inference="similar to AA sequence:frave:gene18376" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc131t10" mRNA complement(join(1446544..1447036,1447294..1447364, 1447577..1447868,1448210..1448571,1448712..1448833, 1448936..1449091,1449182..1449257,1449775..1449883, 1450043..1450123,1450211..1450304,1450578..1450642, 1450981..1451039,1451122..1451239,1452163, 1452166..1452573)) /locus_tag="TCM_021848" /product="Kinase superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s10080.1" /inference="similar to AA sequence:frave:gene18376" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1066t3; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc131t10" CDS complement(join(1446806..1447036,1447294..1447364, 1447577..1447868,1448210..1448571,1448712..1448833, 1448936..1449091,1449182..1449254,1449775..1449883, 1450043..1450123,1450211..1450304,1450578..1450642, 1450981..1451039,1451122..1451239,1452166..1452408)) /locus_tag="TCM_021848" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene18376; paralog of Thecc1EG005020t1" /codon_start=1 /product="Kinase superfamily protein isoform 2" /protein_id="EOY07400.1" /db_xref="TAIR:AT2G37840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IG02" /translation="MAQATGRERVVGNYIVGRQIGSGSFSVVWHARHRVHGTEVAIKE IAMGRLNKKLQDSLMSEIFILRRINHPNIIRMHDIIEVPGKIHLVLEYCKGGDLSMYI TRHGSVSEATAKHFMQQLAAGLQVLRDNNLIHRDLKPQNLLLSRNDSNAVLKIADFGF ARSLQPRGLAETLCGSPLYMAPEIMQLQKYDAKADLWSVGAILFQLVTGKTPFTGNNQ IQLLQNIVKSTELHFPVENNYLTADCKDLCRKLLRRNPVERLTFEEFFNHPFLSQGQP DESLRSQRFSRTVAGYPLSESNPVRNTEDSFQEDCLPFFLDDDSSGPEGSPSSAMKSG TRHKPENTSFRLESHKVPGETLHEPQKSMDQRSVNTGSRVGDSLELIDQDYVLVSGPP MDVSCSSASTSKPNNIPYKSESPPLIPFTNNSTSTAPVPIVDATNINICTVGSLESQS SAPGTSQGSMDMGDVLEQPSSHCMTRIKSLQQCASAITELVHENIEAGKQLEAFSIQL VILAIWKQALHICHAQAASAMEGSPSQETSRLRSGSKKHGTSDTEECQDIFSPEGPED ISVEIEREFLQEVEHAEELAKVIEPGRTEMPDAMETIFQAALALGRHGGVDELMGEME RAALLYSKAVRLLVFLLVEAPSLILNPPFSLTNSDRYRLQTYIDVLRNRQGYSRSQRM ALLKCKEQP" CDS complement(join(1446806..1447036,1447294..1447364, 1447577..1447868,1448210..1448571,1448712..1449091, 1449182..1449254,1449775..1449883,1450043..1450123, 1450211..1450304,1450578..1450642,1450981..1451039, 1451122..1451239,1452166..1452408)) /locus_tag="TCM_021848" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene18376" /codon_start=1 /product="Kinase superfamily protein isoform 1" /protein_id="EOY07399.1" /db_xref="TAIR:AT2G37840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IG02" /translation="MAQATGRERVVGNYIVGRQIGSGSFSVVWHARHRVHGTEVAIKE IAMGRLNKKLQDSLMSEIFILRRINHPNIIRMHDIIEVPGKIHLVLEYCKGGDLSMYI TRHGSVSEATAKHFMQQLAAGLQVLRDNNLIHRDLKPQNLLLSRNDSNAVLKIADFGF ARSLQPRGLAETLCGSPLYMAPEIMQLQKYDAKADLWSVGAILFQLVTGKTPFTGNNQ IQLLQNIVKSTELHFPVENNYLTADCKDLCRKLLRRNPVERLTFEEFFNHPFLSQGQP DESLRSQRFSRTVAGYPLSESNPVRNTEDSFQEDCLPFFLDDDSSGPEGSPSSAMKRS SMKSAYGFSPDAKDASEVTSNPLNKVGFTSKYSGTRHKPENTSFRLESHKVPGETLHE PQKSMDQRSVNTGSRVGDSLELIDQDYVLVSGPPMDVSCSSASTSKPNNIPYKSESPP LIPFTNNSTSTAPVPIVDATNINICTVGSLESQSSAPGTSQGSMDMGDVLEQPSSHCM TRIKSLQQCASAITELVHENIEAGKQLEAFSIQLVILAIWKQALHICHAQAASAMEGS PSQETSRLRSGSKKHGTSDTEECQDIFSPEGPEDISVEIEREFLQEVEHAEELAKVIE PGRTEMPDAMETIFQAALALGRHGGVDELMGEMERAALLYSKAVRLLVFLLVEAPSLI LNPPFSLTNSDRYRLQTYIDVLRNRQGYSRSQRMALLKCKEQP" CDS complement(join(1446806..1447036,1447294..1447364, 1447577..1447868,1448210..1448571,1448712..1448833, 1448936..1449091,1449182..1449257,1449775..1449883, 1450043..1450123,1450211..1450304,1450578..1450642, 1450981..1451039,1451122..1451185)) /locus_tag="TCM_021848" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene18376" /codon_start=1 /product="Kinase superfamily protein isoform 3" /protein_id="EOY07401.1" /db_xref="TAIR:AT2G37840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IG02" /translation="MYITRHGSVSEATAKHFMQQLAAGLQVLRDNNLIHRDLKPQNLL LSRNDSNAVLKIADFGFARSLQPRGLAETLCGSPLYMAPEIMQLQKYDAKADLWSVGA ILFQLVTGKTPFTGNNQIQLLQNIVKSTELHFPVENNYLTADCKDLCRKLLRRNPAVE RLTFEEFFNHPFLSQGQPDESLRSQRFSRTVAGYPLSESNPVRNTEDSFQEDCLPFFL DDDSSGPEGSPSSAMKSGTRHKPENTSFRLESHKVPGETLHEPQKSMDQRSVNTGSRV GDSLELIDQDYVLVSGPPMDVSCSSASTSKPNNIPYKSESPPLIPFTNNSTSTAPVPI VDATNINICTVGSLESQSSAPGTSQGSMDMGDVLEQPSSHCMTRIKSLQQCASAITEL VHENIEAGKQLEAFSIQLVILAIWKQALHICHAQAASAMEGSPSQETSRLRSGSKKHG TSDTEECQDIFSPEGPEDISVEIEREFLQEVEHAEELAKVIEPGRTEMPDAMETIFQA ALALGRHGGVDELMGEMERAALLYSKAVRLLVFLLVEAPSLILNPPFSLTNSDRYRLQ TYIDVLRNRQGYSRSQRMALLKCKEQP" mRNA complement(join(1447340..1447364,1447590..1448571, 1448712..1449091,1449182..1449254,1449775..1449883, 1450043..1450123,1450211..1450304,1450578..1450642, 1450981..1451039,1451122..1451239,1452166..1452578)) /locus_tag="TCM_021848" /product="Kinase superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s10080.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005020t1" /inference="similar to AA sequence:Phytozome:GSVIVT01034089001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc127t1_C2; alternateUTRof:Thecc1EG021848t4; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc131t10" mRNA complement(join(1447340..1447364,1447577..1448571, 1448712..1449091,1449182..1449254,1449775..1449883, 1450043..1450123,1450211..1450304,1450578..1450642, 1450981..1451039,1451122..1451239,1452166..1452578)) /locus_tag="TCM_021848" /product="Kinase superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s10080.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005020t1" /inference="similar to AA sequence:Phytozome:GSVIVT01034089001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc127t10_C2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc131t10" CDS complement(join(1448198..1448571,1448712..1449091, 1449182..1449254,1449775..1449883,1450043..1450123, 1450211..1450304,1450578..1450642,1450981..1451039, 1451122..1451239,1452166..1452408)) /locus_tag="TCM_021848" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG005020t1" /codon_start=1 /product="Kinase superfamily protein isoform 4" /protein_id="EOY07402.1" /db_xref="Phytozome:GSVIVT01034089001" /db_xref="TAIR:AT2G37840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IG02" /translation="MAQATGRERVVGNYIVGRQIGSGSFSVVWHARHRVHGTEVAIKE IAMGRLNKKLQDSLMSEIFILRRINHPNIIRMHDIIEVPGKIHLVLEYCKGGDLSMYI TRHGSVSEATAKHFMQQLAAGLQVLRDNNLIHRDLKPQNLLLSRNDSNAVLKIADFGF ARSLQPRGLAETLCGSPLYMAPEIMQLQKYDAKADLWSVGAILFQLVTGKTPFTGNNQ IQLLQNIVKSTELHFPVENNYLTADCKDLCRKLLRRNPVERLTFEEFFNHPFLSQGQP DESLRSQRFSRTVAGYPLSESNPVRNTEDSFQEDCLPFFLDDDSSGPEGSPSSAMKRS SMKSAYGFSPDAKDASEVTSNPLNKVGFTSKYSGTRHKPENTSFRLESHKVPGETLHE PQKSMDQRSVNTGSRVGDSLELIDQDYVLVSGPPMDVSCSSASTSKPNNIPYKSESPP LIPFTNNSTSTAPVPIVDATNINICTVGSLESQSSAPGTSQGSMDMGDVLEQPSSHCM TRIKSLQQCASAITELVHENVSP" CDS complement(join(1448198..1448571,1448712..1449091, 1449182..1449254,1449775..1449883,1450043..1450123, 1450211..1450304,1450578..1450642,1450981..1451039, 1451122..1451239,1452166..1452408)) /locus_tag="TCM_021848" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG005020t1" /codon_start=1 /product="Kinase superfamily protein isoform 4" /protein_id="EOY07403.1" /db_xref="Phytozome:GSVIVT01034089001" /db_xref="TAIR:AT2G37840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IG02" /translation="MAQATGRERVVGNYIVGRQIGSGSFSVVWHARHRVHGTEVAIKE IAMGRLNKKLQDSLMSEIFILRRINHPNIIRMHDIIEVPGKIHLVLEYCKGGDLSMYI TRHGSVSEATAKHFMQQLAAGLQVLRDNNLIHRDLKPQNLLLSRNDSNAVLKIADFGF ARSLQPRGLAETLCGSPLYMAPEIMQLQKYDAKADLWSVGAILFQLVTGKTPFTGNNQ IQLLQNIVKSTELHFPVENNYLTADCKDLCRKLLRRNPVERLTFEEFFNHPFLSQGQP DESLRSQRFSRTVAGYPLSESNPVRNTEDSFQEDCLPFFLDDDSSGPEGSPSSAMKRS SMKSAYGFSPDAKDASEVTSNPLNKVGFTSKYSGTRHKPENTSFRLESHKVPGETLHE PQKSMDQRSVNTGSRVGDSLELIDQDYVLVSGPPMDVSCSSASTSKPNNIPYKSESPP LIPFTNNSTSTAPVPIVDATNINICTVGSLESQSSAPGTSQGSMDMGDVLEQPSSHCM TRIKSLQQCASAITELVHENVSP" mobile_element complement(1454463..1454858) /note="source:MITE_PIF_Tourist_7 2 404" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(1454749..1454873) /note="source:CACAO_Mariner_E11_scaffold_1 986 1110" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene 1455893..1458905 /locus_tag="TCM_021849" /note="dbxref CacaoGD:Thecc1EG021849" mRNA join(1455893..1456211,1456438..1456478,1456558..1456636, 1456806..1456892,1456969..1457057,1457155..1457226, 1457319..1457441,1458775..1458905) /locus_tag="TCM_021849" /product="Prenylated RAB acceptor 1.A1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g16630.1" /inference="similar to AA sequence:Phytozome:GSVIVT01034090001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13166t1" CDS join(1456054..1456211,1456438..1456478,1456558..1456636, 1456806..1456892,1456969..1457057,1457155..1457226, 1457319..1457422) /locus_tag="TCM_021849" /codon_start=1 /product="Prenylated RAB acceptor 1.A1" /protein_id="EOY07404.1" /db_xref="Phytozome:GSVIVT01034090001" /db_xref="TAIR:AT5G02040.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZM7" /translation="MDWGNVTAEDLIDALREVDWSSPPRPLSEFFSRFTVPRSYAKWN SRLKCNLYYYRTNYFIMIVLILGMGFLRRPVAILAAILTALSIAFLNDSFAGTFSEKV TRTVRQFSPHLAAKMRPPLTPVIRGRPSAKRAIHICGRPRWVFVFIFSSVSFILWYVS CGLLTVLWALAIALLATILHASFRTPNLKARLNTFREEFRAVWRNYSEL" gene complement(1456959..1464387) /locus_tag="TCM_021850" /note="dbxref CacaoGD:Thecc1EG021850" mRNA complement(join(1456959..1457051,1463764..1464387)) /locus_tag="TCM_021850" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.19 coverage" mobile_element 1459989..1462186 /note="source:CACAO_hAT_E1967_scaffold_5 1 2198" /mobile_element_type="transposon:TIR/hAT" gene complement(1462156..1464715) /locus_tag="TCM_021851" /note="dbxref CacaoGD:Thecc1EG021851" mRNA complement(join(1462156..1463203,1464589..1464715)) /locus_tag="TCM_021851" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.59 coverage" CDS complement(1462478..1462765) /locus_tag="TCM_021851" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07406.1" /translation="MRKPPSNTVISSFTRTAAVAVVYVTVLAWFCAEATAHETYQQHE TPSRCQSLCPIQVMLHSFLLLTPQLCSSPLLPLIISRPHYYVSCHSHYNDL" CDS complement(1463903..1464166) /locus_tag="TCM_021850" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07405.1" /translation="MLKSIIPSSADPKLLCVWTNILEKNTGLSRLILLSQTEAQVPGS LLQLAVCLDILVLPWVKVKPDSIKRKQGSMTNHFACRVLAAPG" mobile_element complement(1464561..1464705) /note="source:CACAO_Mariner_E265_scaffold_10 1067 1208" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(1464951..1465039) /note="source:INTACT1604F_F75_scaffold_10-int 447 534" /mobile_element_type="retrotransposon:LTR/Copia" gene 1465152..1470226 /locus_tag="TCM_021852" /note="dbxref CacaoGD:Thecc1EG021852" mRNA join(1465152..1465433,1466177..1466437,1467430..1467493, 1468752..1468924,1469384..1469417,1469830..1470226) /locus_tag="TCM_021852" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.54 coverage" CDS join(1465268..1465433,1466177..1466437,1467430..1467493, 1468752..1468924,1469384..1469417,1469830..1469956) /locus_tag="TCM_021852" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07407.1" /translation="MVLFRCPMGVESSATVDGGSGGDAVGSEDGGDGPDTNGGGDGGG GDGRVAGVWKFGGSVGSGGAGHHFGGGGHGPHGFGGDVAIDIGGSDNGGGVAGGCSDW GVGGTGGHSSWGGGGGGFDGGGGGGGGGGGCDGGGGGGGGGNNGALMVVVEAVNEIDH VCRRKQKRKDGTLGSPSDGVGGHGFGRGGHRSHGNGGSGGGGDINITMSTWGGGGFGS GGGDTVEIPINILGSKVAPTGDGLPVFVGGRHPGGGFGGGGGVGGGGCDGGGGGGC" gene 1470615..1471699 /locus_tag="TCM_021853" /note="dbxref CacaoGD:Thecc1EG021853" mRNA join(1470615..1470848,1471316..1471699) /locus_tag="TCM_021853" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.38 coverage" CDS join(1470785..1470848,1471316..1471623) /locus_tag="TCM_021853" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07408.1" /translation="MKFERGLEETLGSGTGSMEASGCTSLISQKLNEYHPCTIEEKLW GNFFARKNHDGSLTGYNEGHGGGEHFGSGGGGGDGGGTEGGGFGGCDSDAGGWGGGGG AGGCDGGAGGGGGGGGRAGAC" gene complement(1471694..1475186) /locus_tag="TCM_021854" /note="dbxref CacaoGD:Thecc1EG021854" mRNA complement(join(1471694..1472099,1472185..1472232, 1472323..1472378,1472865..1472932,1473165..1473226, 1473497..1473545,1473803..1473884,1473994..1474071, 1474248..1474306,1474428..1474506,1474615..1474722, 1474865..1475186)) /locus_tag="TCM_021854" /product="Uracil phosphoribosyltransferase" /inference="alignment:exonerate- protein:2:ricco:29973.m000401" /inference="similar to AA sequence:Phytozome:POPTR_0006s09200.2" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1244t5" CDS complement(join(1472048..1472099,1472185..1472232, 1472323..1472378,1472865..1472932,1473165..1473226, 1473497..1473545,1473803..1473884,1473994..1474071, 1474248..1474306,1474428..1474506,1474615..1474722, 1474865..1475161)) /locus_tag="TCM_021854" /codon_start=1 /product="Uracil phosphoribosyltransferase" /protein_id="EOY07409.1" /db_xref="Phytozome:POPTR_0006s09200.2" /db_xref="TAIR:AT3G53900.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M336" /translation="MKGKPRKVPNWTQKSDPKETAMPKKEKGLSRKGESNSNYTRLGY NWPGEIEIIGCMACRINFSLRCSSSDTPRFVPTCHPCKNPTLLLPPFKPHSNPIKLSF SSSRWLRRRRMGFVTVNSHMATEEKPVSEDRMLVFVPPHPLIKHWISVLRNEQTPCPI FRNAMAELGRLLIYEASRDWLPTVAGEIQSPMAIASVEFVDPREPVAIVPILRAGLSL AEHASSILPATKTYHLGVSRDEETLLPTVYLNKLPDKFPAGSRVFVVDPMLATGGTIV AALDLLKERGIDNKQMKVISAVAAPPALQKLSEKFPGLHVYTGIIDPTVNEKGFIIPG LGDAGDRSYGT" mobile_element complement(1475437..1475501) /note="source:scaffold_1_CACTA_0001 5962 6027" /mobile_element_type="transposon:TIR/CACTA" gene 1475537..1476465 /locus_tag="TCM_021855" /note="dbxref CacaoGD:Thecc1EG021855" mRNA 1475537..1476465 /locus_tag="TCM_021855" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.53 coverage" CDS 1475576..1476124 /locus_tag="TCM_021855" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07410.1" /translation="MPHGVLLFHAYKLNLVLRNPPQATRQKVHACNVCCDLVDGLSYA TLLCMHPICTKLSEHVRHVMHLNHLLKVRSFHPGWCLVCKAMCTSCRYRCELCCFDLR LDCVLPSDTPTPRFLPPEAPPPRAPCFSCAPVALPRPPYAYGLPFIRPYFVPYASRIF PTNSSSQVQGDRNKKSLIVFGE" gene 1477767..1479769 /locus_tag="TCM_021856" /note="dbxref CacaoGD:Thecc1EG021856" mRNA join(1477767..1478424,1478497..1478913,1479458..1479769) /locus_tag="TCM_021856" /product="Cysteine/Histidine-rich C1 domain family protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT2G37800.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021857t1" /inference="similar to AA sequence:TAIR:AT2G37820.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1012t1" CDS join(1477778..1478424,1478497..1478734) /locus_tag="TCM_021856" /note="paralog of Thecc1EG021857t1" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein, putative" /protein_id="EOY07411.1" /db_xref="TAIR:AT2G37820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HL39" /translation="MTPLSKKTMQHFTHSHPLTEVYADTEFLCDGCRTIGIGTRYRCE SCHFDLHDHCATCRSELSSFMHEHDLKLVVFRPQAACQNGRFCDLCGDPIEGIFYHCK LCEFDVHPLCTQLPEYVRHVMHKDHPLRLQRSVPGWCMVCKDTCPSWHYRCGLCCFDI HFECVLAPCEVAETSTPTPPSLKRPVPPPPSPSASPSFDACYAYGSGAIPPPPYFASG GYNVNSHPHGNSQGHGVYGAIPPPPYFEYGYGVPLAPPYFGPHPHGYGIPPSSGRYNV NSHPHSDSQVHGGWGKFR" gene 1479658..1481702 /locus_tag="TCM_021857" /note="dbxref CacaoGD:Thecc1EG021857" mRNA join(1479658..1480539,1480648..1481702) /locus_tag="TCM_021857" /product="Cysteine/Histidine-rich C1 domain family protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT2G37800.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021856t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400015484" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2091t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2715t6" CDS join(1479948..1480539,1480648..1480955) /locus_tag="TCM_021857" /note="paralog of Thecc1EG021856t1" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein, putative" /protein_id="EOY07412.1" /db_xref="Phytozome:PGSC0003DMP400015484" /db_xref="TAIR:AT2G37820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HL39" /translation="MASLPQKTVQHFTHDHPLTEVDARTEFVCDGCRTLGVGTRYGCE SCDFDLHDHCATCPLELSSFMHEHDLKLVVSKPQATSLQNERFCDLCGNPVQGIFYQC RLCEFDVHPLCTKLPEYVRHVMHKEHPLRLQGSVPGRCMVCKDTCTSWHYRCGICCFD LHLECVLAPCEEEATSTSTSRSLKSPVPPPSPSAPSLSSPYYVYGYGAIQPPPPPPSS PYYAYGYGAIPPPPYSAYGYRPSAHGYGTPSSSGGYHLNNHPQCSSQVQGVGGKNRKN MYAIAGQLALGVVTNVVFGTIFW" gene 1481750..1491049 /locus_tag="TCM_021858" /note="dbxref CacaoGD:Thecc1EG021858" mRNA join(1481750..1481831,1484136..1484640,1484800..1484871, 1484997..1485100,1485220..1485322,1485430..1485591, 1486077..1486354,1486800..1486950,1487063..1487227, 1487381..1487458,1487562..1487651,1488222..1488308, 1488424..1488510,1488587..1488683,1488757..1488860, 1489044..1489119,1489404..1489554,1489666..1489734, 1490009..1490075,1490149..1490219,1490598..1491049) /locus_tag="TCM_021858" /product="Pyrroline-5-carboxylate synthetase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016467001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042687t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016467001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02558t00001" mRNA join(1484514..1484640,1484800..1484871,1484997..1485100, 1485220..1485322,1485430..1485591,1486077..1486354, 1486800..1486950,1487063..1487227,1487381..1487458, 1487562..1487651,1488222..1488308,1488424..1488510, 1488587..1488683,1489402..1489734,1490009..1490075, 1490149..1490219,1490598..1490746) /locus_tag="TCM_021858" /product="Pyrroline-5-carboxylate synthetase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016467001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042687t2" /inference="similar to AA sequence:Phytozome:Glyma03g12240.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc139t4; alternateUTRof:Thecc1EG021858t3; inference alignment:Newbler:10:TSA:cgbaL_g02558t00001" mRNA join(1484514..1484640,1484800..1484871,1484997..1485100, 1485220..1485322,1485430..1485591,1486077..1486354, 1486800..1486950,1487063..1487227,1487381..1487458, 1487562..1487651,1488222..1488308,1488424..1488510, 1488587..1488683,1489402..1489554,1489666..1490075, 1490149..1490219,1490598..1490746) /locus_tag="TCM_021858" /product="Pyrroline-5-carboxylate synthetase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016467001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042687t2" /inference="similar to AA sequence:Phytozome:Glyma03g12240.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc139t7; alternateUTRof:Thecc1EG021858t3; inference alignment:Newbler:10:TSA:cgbaL_g02558t00001" mRNA join(1484514..1484640,1484800..1484871,1484997..1485100, 1485220..1485322,1485430..1485591,1486077..1486354, 1486800..1486950,1487063..1487227,1487381..1487458, 1487562..1487651,1488222..1488308,1488424..1488510, 1488587..1488683,1489402..1489554,1489666..1489734, 1490009..1490219,1490598..1490746) /locus_tag="TCM_021858" /product="Pyrroline-5-carboxylate synthetase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016467001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042687t2" /inference="similar to AA sequence:Phytozome:Glyma03g12240.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc139t8; alternateUTRof:Thecc1EG021858t3; inference alignment:Newbler:10:TSA:cgbaL_g02558t00001" mRNA join(1484514..1484640,1484800..1484871,1484997..1485100, 1485220..1485322,1485430..1485591,1486077..1486354, 1486800..1486950,1487063..1487227,1487381..1487458, 1487562..1487651,1488222..1488308,1488424..1488510, 1488587..1488683,1489402..1489554,1489666..1489734, 1490009..1490075,1490149..1490219,1490598..1490746) /locus_tag="TCM_021858" /product="Pyrroline-5-carboxylate synthetase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016467001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042687t2" /inference="similar to AA sequence:Phytozome:Glyma03g12240.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc139t12; inference alignment:Newbler:10:TSA:cgbaL_g02558t00001" mRNA join(1484538..1484640,1484800..1484871,1485046..1485100, 1485220..1485322,1485430..1485591,1486077..1486354, 1486800..1486950,1487063..1487227,1487381..1487458, 1487562..1487651,1488222..1488308,1488424..1488510, 1488587..1488683,1488757..1488860,1489044..1489119, 1489404..1489554,1489666..1489734,1490009..1490075, 1490149..1490219,1490598..1490933) /locus_tag="TCM_021858" /product="Pyrroline-5-carboxylate synthetase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016467001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042687t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016467001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02558t00002; inference alignment:Newbler:10:TSA:cgbaL_g02558t00001" CDS join(1484581..1484640,1484800..1484871,1484997..1485100, 1485220..1485322,1485430..1485591,1486077..1486354, 1486800..1486950,1487063..1487227,1487381..1487458, 1487562..1487651,1488222..1488308,1488424..1488510, 1488587..1488683,1488757..1488860,1489044..1489119, 1489404..1489554,1489666..1489734,1490009..1490075, 1490149..1490219,1490598..1490685) /locus_tag="TCM_021858" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042687t1" /codon_start=1 /product="Pyrroline-5-carboxylate synthetase isoform 1" /protein_id="EOY07413.1" /db_xref="Phytozome:GSVIVT01016467001" /db_xref="TAIR:AT3G55610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B1A2U9" /translation="MDSMDPSRAFVTNVKRLIVKVGTAVVTRADGRLALGRLGALCEQ LKELNSQGYEIVLVTSGAVGLGRQRLRYRKLVNSSLADLQNLQFELDGKACAAVGQSS LMALYDTLFSQLDVTSSQHLVTDSDFRSVSFRKQLSETVQSLLALKVIPIFNENDAVS TRRAPYQDSSGIFWDNDSLAGLLALELQADLLVLLSDVDGLYSGPPSDPNSKLIHTYI KEKHQGEITFGDKSRLGRGGMTAKVNAALCAVFAGIPVVITSGYATDNIIKVLQGKRI GTLFHQDAHLWTSVKEVGAREMAVAARDCSRRLQALHSEDRRKILLDIADALEANESL IKVENEADVAAAQDAGYETSLISRLALKPGKIAGLAKSIRVLADMEEPIGRVLKRTEL ADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAKRSNAILHK VITSAIPNNIGDKLIGLVASREDIPDLLKLDDVIDLVIPRGSNKLVSQIKNSTKIPVL GHADGICHVYVDKSAKADMAKQIVLDAKIDYPAACNAMETLLVHKDLSNNGLLNELIV ELRHEGVILYGGPRASSLLNIPEVHSFHHEYNSMAFTIEIVDDVQAAIEHIHQHGSSH TDCIVTENHEVAEIFLNRVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVG VEGLLTTRWILRGSGQVVDGDKGVIYSHKDLPLQLQL" CDS join(1484581..1484640,1484800..1484871,1484997..1485100, 1485220..1485322,1485430..1485591,1486077..1486354, 1486800..1486950,1487063..1487227,1487381..1487458, 1487562..1487651,1488222..1488308,1488424..1488510, 1488587..1488683,1489402..1489445) /locus_tag="TCM_021858" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG042687t2" /codon_start=1 /product="Pyrroline-5-carboxylate synthetase isoform 3" /protein_id="EOY07415.1" /db_xref="Phytozome:Glyma03g12240.1" /db_xref="TAIR:AT2G39800.4" /db_xref="UniProtKB/TrEMBL:UniRef50_B1A2U9" /translation="MDSMDPSRAFVTNVKRLIVKVGTAVVTRADGRLALGRLGALCEQ LKELNSQGYEIVLVTSGAVGLGRQRLRYRKLVNSSLADLQNLQFELDGKACAAVGQSS LMALYDTLFSQLDVTSSQHLVTDSDFRSVSFRKQLSETVQSLLALKVIPIFNENDAVS TRRAPYQDSSGIFWDNDSLAGLLALELQADLLVLLSDVDGLYSGPPSDPNSKLIHTYI KEKHQGEITFGDKSRLGRGGMTAKVNAALCAVFAGIPVVITSGYATDNIIKVLQGKRI GTLFHQDAHLWTSVKEVGAREMAVAARDCSRRLQALHSEDRRKILLDIADALEANESL IKVENEADVAAAQDAGYETSLISRLALKPGKIAGLAKSIRVLADMEEPIGRVLKRTEL ADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAKRSNAILHK VITSAIPNNIGDKLIGLVASREDIPDLLKLDDVIDLVIPRGSNKLVSQIKNSTKIPVL GHAEVLSCMVDQERLLY" CDS join(1484581..1484640,1484800..1484871,1484997..1485100, 1485220..1485322,1485430..1485591,1486077..1486354, 1486800..1486950,1487063..1487227,1487381..1487458, 1487562..1487651,1488222..1488308,1488424..1488510, 1488587..1488683,1489402..1489445) /locus_tag="TCM_021858" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG042687t2" /codon_start=1 /product="Pyrroline-5-carboxylate synthetase isoform 3" /protein_id="EOY07416.1" /db_xref="Phytozome:Glyma03g12240.1" /db_xref="TAIR:AT2G39800.4" /db_xref="UniProtKB/TrEMBL:UniRef50_B1A2U9" /translation="MDSMDPSRAFVTNVKRLIVKVGTAVVTRADGRLALGRLGALCEQ LKELNSQGYEIVLVTSGAVGLGRQRLRYRKLVNSSLADLQNLQFELDGKACAAVGQSS LMALYDTLFSQLDVTSSQHLVTDSDFRSVSFRKQLSETVQSLLALKVIPIFNENDAVS TRRAPYQDSSGIFWDNDSLAGLLALELQADLLVLLSDVDGLYSGPPSDPNSKLIHTYI KEKHQGEITFGDKSRLGRGGMTAKVNAALCAVFAGIPVVITSGYATDNIIKVLQGKRI GTLFHQDAHLWTSVKEVGAREMAVAARDCSRRLQALHSEDRRKILLDIADALEANESL IKVENEADVAAAQDAGYETSLISRLALKPGKIAGLAKSIRVLADMEEPIGRVLKRTEL ADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAKRSNAILHK VITSAIPNNIGDKLIGLVASREDIPDLLKLDDVIDLVIPRGSNKLVSQIKNSTKIPVL GHAEVLSCMVDQERLLY" CDS join(1484581..1484640,1484800..1484871,1484997..1485100, 1485220..1485322,1485430..1485591,1486077..1486354, 1486800..1486950,1487063..1487227,1487381..1487458, 1487562..1487651,1488222..1488308,1488424..1488510, 1488587..1488683,1489402..1489445) /locus_tag="TCM_021858" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG042687t2" /codon_start=1 /product="Pyrroline-5-carboxylate synthetase isoform 3" /protein_id="EOY07417.1" /db_xref="Phytozome:Glyma03g12240.1" /db_xref="TAIR:AT2G39800.4" /db_xref="UniProtKB/TrEMBL:UniRef50_B1A2U9" /translation="MDSMDPSRAFVTNVKRLIVKVGTAVVTRADGRLALGRLGALCEQ LKELNSQGYEIVLVTSGAVGLGRQRLRYRKLVNSSLADLQNLQFELDGKACAAVGQSS LMALYDTLFSQLDVTSSQHLVTDSDFRSVSFRKQLSETVQSLLALKVIPIFNENDAVS TRRAPYQDSSGIFWDNDSLAGLLALELQADLLVLLSDVDGLYSGPPSDPNSKLIHTYI KEKHQGEITFGDKSRLGRGGMTAKVNAALCAVFAGIPVVITSGYATDNIIKVLQGKRI GTLFHQDAHLWTSVKEVGAREMAVAARDCSRRLQALHSEDRRKILLDIADALEANESL IKVENEADVAAAQDAGYETSLISRLALKPGKIAGLAKSIRVLADMEEPIGRVLKRTEL ADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAKRSNAILHK VITSAIPNNIGDKLIGLVASREDIPDLLKLDDVIDLVIPRGSNKLVSQIKNSTKIPVL GHAEVLSCMVDQERLLY" CDS join(1484581..1484640,1484800..1484871,1484997..1485100, 1485220..1485322,1485430..1485591,1486077..1486354, 1486800..1486950,1487063..1487227,1487381..1487458, 1487562..1487651,1488222..1488308,1488424..1488510, 1488587..1488683,1489402..1489445) /locus_tag="TCM_021858" /note="encoded by transcript variant 6; alternatively spliced; paralog of Thecc1EG042687t2" /codon_start=1 /product="Pyrroline-5-carboxylate synthetase isoform 3" /protein_id="EOY07418.1" /db_xref="Phytozome:Glyma03g12240.1" /db_xref="TAIR:AT2G39800.4" /db_xref="UniProtKB/TrEMBL:UniRef50_B1A2U9" /translation="MDSMDPSRAFVTNVKRLIVKVGTAVVTRADGRLALGRLGALCEQ LKELNSQGYEIVLVTSGAVGLGRQRLRYRKLVNSSLADLQNLQFELDGKACAAVGQSS LMALYDTLFSQLDVTSSQHLVTDSDFRSVSFRKQLSETVQSLLALKVIPIFNENDAVS TRRAPYQDSSGIFWDNDSLAGLLALELQADLLVLLSDVDGLYSGPPSDPNSKLIHTYI KEKHQGEITFGDKSRLGRGGMTAKVNAALCAVFAGIPVVITSGYATDNIIKVLQGKRI GTLFHQDAHLWTSVKEVGAREMAVAARDCSRRLQALHSEDRRKILLDIADALEANESL IKVENEADVAAAQDAGYETSLISRLALKPGKIAGLAKSIRVLADMEEPIGRVLKRTEL ADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAKRSNAILHK VITSAIPNNIGDKLIGLVASREDIPDLLKLDDVIDLVIPRGSNKLVSQIKNSTKIPVL GHAEVLSCMVDQERLLY" CDS join(1485293..1485322,1485430..1485591,1486077..1486354, 1486800..1486950,1487063..1487227,1487381..1487458, 1487562..1487651,1488222..1488308,1488424..1488510, 1488587..1488683,1488757..1488860,1489044..1489119, 1489404..1489554,1489666..1489734,1490009..1490075, 1490149..1490219,1490598..1490685) /locus_tag="TCM_021858" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042687t1" /codon_start=1 /product="Pyrroline-5-carboxylate synthetase isoform 2" /protein_id="EOY07414.1" /db_xref="Phytozome:GSVIVT01016467001" /db_xref="TAIR:AT3G55610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B1A2U9" /translation="MALYDTLFSQLDVTSSQHLVTDSDFRSVSFRKQLSETVQSLLAL KVIPIFNENDAVSTRRAPYQDSSGIFWDNDSLAGLLALELQADLLVLLSDVDGLYSGP PSDPNSKLIHTYIKEKHQGEITFGDKSRLGRGGMTAKVNAALCAVFAGIPVVITSGYA TDNIIKVLQGKRIGTLFHQDAHLWTSVKEVGAREMAVAARDCSRRLQALHSEDRRKIL LDIADALEANESLIKVENEADVAAAQDAGYETSLISRLALKPGKIAGLAKSIRVLADM EEPIGRVLKRTELADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKG GKEAKRSNAILHKVITSAIPNNIGDKLIGLVASREDIPDLLKLDDVIDLVIPRGSNKL VSQIKNSTKIPVLGHADGICHVYVDKSAKADMAKQIVLDAKIDYPAACNAMETLLVHK DLSNNGLLNELIVELRHEGVILYGGPRASSLLNIPEVHSFHHEYNSMAFTIEIVDDVQ AAIEHIHQHGSSHTDCIVTENHEVAEIFLNRVDSAAVFHNASTRFCDGARFGLGAEVG ISTSRIHARGPVGVEGLLTTRWILRGSGQVVDGDKGVIYSHKDLPLQLQL" gene complement(1491002..1493737) /locus_tag="TCM_021861" /note="dbxref CacaoGD:Thecc1EG021861" mRNA complement(join(1491002..1491349,1491482..1491727, 1491816..1492091,1492215..1492302,1492806..1492882, 1492977..1493027,1493344..1493481,1493587..1493737)) /locus_tag="TCM_021861" /product="NAD(P)-linked oxidoreductase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s10370.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021862t1" /inference="similar to AA sequence:Phytozome:GSVIVT01034098001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1412t4" CDS complement(join(1491263..1491349,1491482..1491727, 1491816..1492091,1492215..1492302,1492806..1492882, 1492977..1493027,1493344..1493475)) /locus_tag="TCM_021861" /note="paralog of Thecc1EG021862t1" /codon_start=1 /product="NAD(P)-linked oxidoreductase superfamily protein" /protein_id="EOY07419.1" /db_xref="Phytozome:GSVIVT01034098001" /db_xref="TAIR:AT2G37770.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B7EYZ0" /translation="MDKENGHGPLYFELNTGAKMPSVGLGTWKAPPGVVGDAVIAAVK AGYRHIDCAHVYDNEKEVGIALKELLSTGVVKRSEMFITSKLWCSDLAPEDVSKALTR TLEALQLDYIDLYLIHWPFRTKPGMRGWDPEIMAPLCLPETWSAMEGLYASGQARAIG VSNFSTKKLQDLLQSAKVPPAVNQVECHPVWQQPGLHNLCKSTGVHLSAYSPLGSPGT WIKGEIMKEPVLIEIAEKLNKSPAQVALRWGIQSGHSVLPKSVNESRIKENFSLFDWS IPPELFSKFSGIHQQRLLRGEFAVHGTRSPYKSLEELWDGEI" mobile_element complement(1492594..1492664) /note="source:CACAO_Mutator_E39_scaffold_1 4419 4486" /mobile_element_type="transposon:TIR/Mutator" gene complement(1494423..1497017) /locus_tag="TCM_021862" /note="dbxref CacaoGD:Thecc1EG021862" mRNA complement(join(1494423..1494555,1494873..1495121, 1495296..1495571,1495841..1495928,1496030..1496106, 1496307..1496357,1496474..1497017)) /locus_tag="TCM_021862" /product="NAD(P)-linked oxidoreductase superfamily protein" /inference="alignment:exonerate- protein:2:ricco:29973.m000407" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021863t1" /inference="similar to AA sequence:TAIR:AT2G37770.2" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g02212t00001_C2" CDS complement(join(1494469..1494555,1494873..1495121, 1495296..1495571,1495841..1495928,1496030..1496106, 1496307..1496357,1496474..1496593)) /locus_tag="TCM_021862" /note="paralog of Thecc1EG021863t1" /codon_start=1 /product="NAD(P)-linked oxidoreductase superfamily protein" /protein_id="EOY07420.1" /db_xref="TAIR:AT2G37770.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M338" /translation="MASEIRFFELNTGAKIPSVGLGTWQSEPGLLGAAVAAAVKIGYR HIDCAQIYGNEKEIGLVLKKLFEDGVVKREELFITSKLWCTDHAPEDVPAALDRTLQD LQLDYVDLYLIHWPIRMKKGSVGFKPENLLQPDIPSTWRAMEALYDSGKARALGVSNF SSKKLQDLLEVARVPPAVNQVECHPSWQQTKLRELCKSKGIHLSGYSPLGSPGTTWLK SEVLKLPILNMVAQKLGKTPAQVALRWGLQMGHSVLPKSTHEERIKENFDVFDWSIPE DLFAKFSEIEQARLVRGNSFAHETLSPYKSVEELWDGEI" gene complement(1497071..1512013) /locus_tag="TCM_021863" /note="dbxref CacaoGD:Thecc1EG021863" mRNA complement(join(1497071..1497908,1498086..1498334, 1498503..1498778,1498937..1499024,1499129..1499205, 1499311..1499361,1499684..1499893,1500172..1500281, 1500613..1500688,1500801..1501049,1501306..1501581, 1501696..1501783,1501957..1502033,1502216..1502266, 1502650..1502811,1502914..1502947,1504250..1504271, 1504512..1504587,1504691..1504939,1505084..1505359, 1505477..1505564,1505654..1505730,1505892..1505942, 1506040..1506122,1509744..1509819,1509923..1510171, 1510316..1510591,1510709..1510796,1510891..1510967, 1511148..1511198,1511297..1512013)) /locus_tag="TCM_021863" /product="NAD(P)-linked oxidoreductase superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT2G37760.2" /inference="similar to AA sequence:frave:gene18358" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1061t9" mRNA complement(join(1497071..1497908,1498086..1498778, 1498937..1499024,1499129..1499205,1499311..1499361, 1499684..1499893,1500172..1500281,1500613..1500688, 1500801..1501049,1501306..1501581,1501696..1501783, 1501957..1502033,1502216..1502266,1502650..1502811, 1502914..1502947,1504250..1504271,1504512..1504587, 1504691..1504939,1505084..1505359,1505477..1505564, 1505654..1505730,1505892..1505942,1506040..1506122, 1509744..1509819,1509923..1510171,1510316..1510591, 1510709..1510796,1510891..1510967,1511148..1511198, 1511297..1512013)) /locus_tag="TCM_021863" /product="NAD(P)-linked oxidoreductase superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Sb03g039760.1.2" /inference="similar to AA sequence:frave:gene18358" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:PASA:2:TSA:puevd3b021160t1a2; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1061t9" CDS complement(join(1497822..1497908,1498086..1498334, 1498503..1498778,1498937..1499024,1499129..1499205, 1499311..1499361,1499684..1499893,1500172..1500281, 1500613..1500688,1500801..1501049,1501306..1501581, 1501696..1501783,1501957..1502033,1502216..1502266, 1502650..1502811,1502914..1502947,1504250..1504271, 1504512..1504587,1504691..1504939,1505084..1505359, 1505477..1505564,1505654..1505730,1505892..1505942, 1506040..1506122,1509744..1509819,1509923..1510171, 1510316..1510591,1510709..1510796,1510891..1510967, 1511148..1511198,1511297..1511419)) /locus_tag="TCM_021863" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene18358" /codon_start=1 /product="NAD(P)-linked oxidoreductase superfamily protein, putative isoform 1" /protein_id="EOY07421.1" /db_xref="TAIR:AT2G37770.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B7EYZ0" /translation="MADDIRFFELNTGAKIPSVGLGTYGAKQHGVIQNTVTTAIKVGY RHIDCASLYGNEKEIGSALKKLFNEGIVRREDLWITSKLWCSDHLPEDVPKALNKTLQ DLQLDYVDLYLIHWPVSLKKGSIVVTPESFTQPDIPGTWRAMEALYDSGKARAIGVSN FSSKKLGDLLEVARITPAVNQVEIHPVWQQPKLHEYCQSKGVHLTGYSPLGSQAGENV RKKVLDNPVVKMVAEELGKSPAQVALRWGLQMGHSILPKSISEARLKENIDVFNWSIP EDLIAQLSQIQQERLGRAEHFVHDSYGVYRTVEELWDGAKIPSVGLGTYGAKHGVIQN TVITAIKVGYRHIDCASLYGNEKEIGSALKKLFNEGIVRREDLWITSKLWCSDHLPED VSKALNKTLQDLQLDYVDLYLIHWPVSLKKGSIVVKPESFTQPDIPGTWRAMEALNDS GKARAIGVSNFSSKKLGDLLEVARITPAVNQVEIHPVWQQPKLHEYCQSKGVHLTGYS PLGSQAGENVRKKVLDNPVVKMVAEELGKSPAQVALRWGLQMGHSVVPKSISEARLKE NIDVFDWSIPEDLIAQLSQIQQERLARAEHFVHDSYGVYRTVEELWDGSVHFKFRKRR QGKNPQLGKKTPVNLSVVSMNKMAEAIRYFELNTGAKIPSVGLGTWQAAPGVVGNAVA AAIKLGYRHIDCAEAYENQKEIGSVLKKLFDDGVVKREDLWITSKLWCNSHAPEVVPE ALNNTLQDLQLDYLDLYLIHWPASMKKGAVGFKPENLTQPDIPSTWRAMEALYDSGKA RAIGVSNFSSKKLGDLLEVARVSPAVLQVESHPVWQQPKLHEFCKSNGVHITGYSPLG SPGTGTIKTQVLKNPVLNMVAEKLGRSPAQVALRWGLQMGHSVLPKSTNEVRIRENFD VFDWSIPEDLFVKLSEIEQERLVRGTGFVHETYGAFRTIEELWDVQESNRWYRSKPRL AATSPKHSSIKGRVTFKYIDKDWILAYLYWSLLAAVSFPYKKDSHWSQHSLAKMAQAI RYFELNTGAKIPSVGLGTWQAAPGVVGDAVATAIKLGYRHIDCAQVYGNEKEIGSVLK KLFEDGVVKREDLWITSKLWNTNHAPEDVQEALNSTLEDLHLNYLDLYLIHWPVSMKK GAVGFNGEDLTQPDIPATWRAMEALYDSGKARAIGVSNFSTKKLGDLFEVARVPPAVV QVECHPVWQQPKLHALCKSKGIHLTGFSPLGSPGTGTVQIEVLKDPVLNMVAEKLGKS PAQIAIRWGLQMGHSVLPKSTNEVRIRQNFDVFDFSIPEDLFVKFSEIEQERLIKATV FAHETFGAYRTVEELWDGEV" CDS complement(join(1498494..1498778,1498937..1499024, 1499129..1499205,1499311..1499361,1499684..1499893, 1500172..1500281,1500613..1500688,1500801..1501049, 1501306..1501581,1501696..1501783,1501957..1502033, 1502216..1502266,1502650..1502811,1502914..1502947, 1504250..1504271,1504512..1504587,1504691..1504939, 1505084..1505359,1505477..1505564,1505654..1505730, 1505892..1505942,1506040..1506122,1509744..1509819, 1509923..1510171,1510316..1510591,1510709..1510796, 1510891..1510967,1511148..1511198,1511297..1511419)) /locus_tag="TCM_021863" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene18358" /codon_start=1 /product="NAD(P)-linked oxidoreductase superfamily protein, putative isoform 2" /protein_id="EOY07422.1" /db_xref="TAIR:AT2G37770.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B7EYZ0" /translation="MADDIRFFELNTGAKIPSVGLGTYGAKQHGVIQNTVTTAIKVGY RHIDCASLYGNEKEIGSALKKLFNEGIVRREDLWITSKLWCSDHLPEDVPKALNKTLQ DLQLDYVDLYLIHWPVSLKKGSIVVTPESFTQPDIPGTWRAMEALYDSGKARAIGVSN FSSKKLGDLLEVARITPAVNQVEIHPVWQQPKLHEYCQSKGVHLTGYSPLGSQAGENV RKKVLDNPVVKMVAEELGKSPAQVALRWGLQMGHSILPKSISEARLKENIDVFNWSIP EDLIAQLSQIQQERLGRAEHFVHDSYGVYRTVEELWDGAKIPSVGLGTYGAKHGVIQN TVITAIKVGYRHIDCASLYGNEKEIGSALKKLFNEGIVRREDLWITSKLWCSDHLPED VSKALNKTLQDLQLDYVDLYLIHWPVSLKKGSIVVKPESFTQPDIPGTWRAMEALNDS GKARAIGVSNFSSKKLGDLLEVARITPAVNQVEIHPVWQQPKLHEYCQSKGVHLTGYS PLGSQAGENVRKKVLDNPVVKMVAEELGKSPAQVALRWGLQMGHSVVPKSISEARLKE NIDVFDWSIPEDLIAQLSQIQQERLARAEHFVHDSYGVYRTVEELWDGSVHFKFRKRR QGKNPQLGKKTPVNLSVVSMNKMAEAIRYFELNTGAKIPSVGLGTWQAAPGVVGNAVA AAIKLGYRHIDCAEAYENQKEIGSVLKKLFDDGVVKREDLWITSKLWCNSHAPEVVPE ALNNTLQDLQLDYLDLYLIHWPASMKKGAVGFKPENLTQPDIPSTWRAMEALYDSGKA RAIGVSNFSSKKLGDLLEVARVSPAVLQVESHPVWQQPKLHEFCKSNGVHITGYSPLG SPGTGTIKTQVLKNPVLNMVAEKLGRSPAQVALRWGLQMGHSVLPKSTNEVRIRENFD VFDWSIPEDLFVKLSEIEQERLVRGTGFVHETYGAFRTIEELWDVQESNRWYRSKPRL AATSPKHSSIKGRVTFKYIDKDWILAYLYWSLLAAVSFPYKKDSHWSQHSLAKMAQAI RYFELNTGAKIPSVGLGTWQAAPGVVGDAVATAIKLGYRHIDCAQVYGNEKEIGSVLK KLFEDGVVKREDLWITSKLWNTNHAPEDVQEALNSTLEDLHLNYLDLYLIHWPVSMKK GAVGFNGEDLTQPDIPATWRAMEALYDSGKARAIGVSNFSTKKLGDLFEVARVPPAVV QVECHPVWQQPKLHALCKSKGIHLTVS" mobile_element complement(1502429..1502477) /note="source:scaffold_4_CACTA_0505 16301 16350" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1502592..1502633) /note="source:scaffold_4_CACTA_0491 533 575" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1507925..1508035 /note="source:scaffold_4_CACTA_0510 5756 5881" /mobile_element_type="transposon:TIR/CACTA" gene 1512572..1515498 /locus_tag="TCM_021864" /note="dbxref CacaoGD:Thecc1EG021864" mRNA join(1512572..1512907,1514436..1514568,1515096..1515498) /locus_tag="TCM_021864" /product="CASP-like protein" /inference="alignment:exonerate- protein:2:ricco:29973.m000408" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042690t2" /inference="similar to AA sequence:ricco:29973.m000408" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13163t1" CDS join(1512777..1512907,1514436..1514568,1515096..1515296) /locus_tag="TCM_021864" /note="dbxref ricco:29973.m000408; paralog of Thecc1EG042690t2" /codon_start=1 /product="CASP-like protein" /protein_id="EOY07423.1" /db_xref="TAIR:AT3G53850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q945M8" /translation="MKELIGSPGTVSGLTLRIAQCAFAAASIGVMVSTSDFSTYTAFC YLIASMGLQLLWSFGLACLDVYALRRKRDLQNPVLVSLFVVGDWVTAMLSLAAACSSA GVIVLYARDLDFCRAQAHLPCRRYEISIILAFITWVLIAMSSHVMFWILASF" gene complement(1515931..1518533) /locus_tag="TCM_021865" /note="dbxref CacaoGD:Thecc1EG021865" mRNA complement(join(1515931..1517238,1517328..1517567, 1517668..1517730,1518045..1518184,1518453..1518533)) /locus_tag="TCM_021865" /product="Glucose-1-phosphate adenylyltransferase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s09130.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042692t4" /inference="similar to AA sequence:Phytozome:POPTR_0006s09130.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00165t00002" mRNA complement(join(1515931..1517238,1517328..1517567, 1517668..1517730,1518045..1518184,1518367..1518452)) /locus_tag="TCM_021865" /product="Glucose-1-phosphate adenylyltransferase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s09130.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042692t4" /inference="similar to AA sequence:Phytozome:POPTR_0006s09130.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:PASA:2:TSA:puevd3b021163t1a2; alternateUTRof:Thecc1EG021865t1; inference alignment:Newbler:10:TSA:cgbaP1_g00165t00002" mRNA complement(join(1516110..1517238,1517328..1517567, 1517668..1517733,1518045..1518184,1518367..1518452)) /locus_tag="TCM_021865" /product="Glucose-1-phosphate adenylyltransferase family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s09130.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042692t5" /inference="similar to AA sequence:Phytozome:POPTR_0006s09130.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1096t2; inference alignment:Newbler:10:TSA:cgbaP1_g00165t00002" CDS complement(join(1516567..1517238,1517328..1517567, 1517668..1517730,1518045..1518155)) /locus_tag="TCM_021865" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042692t4" /codon_start=1 /product="Glucose-1-phosphate adenylyltransferase family protein isoform 1" /protein_id="EOY07424.1" /db_xref="Phytozome:POPTR_0006s09130.1" /db_xref="TAIR:AT2G39770.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D8M1B1" /translation="MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAI GVTEVVLAINYQPEIMLNFLKEFEKKLDIKITCSQETEPLGTAGPLALARDKLIDGSG EPFFVLNSDVISEYPLKEMIDFHKGHGGEASIMVTKVDEPSKYGVVVMEETTGKVEKF VEKPKIFVGNKINAGIYLLNPSVLDRIELRPTSIEKEVFPMIAGENKLYAMVLPGFWM DIGQPKDYITGLRLYLDSLRKKSSAELEAGSNIVGNVLVDESAVIGQGCLIGPDVAIG PGCIIESGVRLSRCTIMRGVRIKKHACISSSIIGWHSTVGRWARVENMTILGEDVHLG DEVYSNGGVVLPHKEIKSSILKPEIVM" CDS complement(join(1516567..1517238,1517328..1517567, 1517668..1517730,1518045..1518155)) /locus_tag="TCM_021865" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042692t4" /codon_start=1 /product="Glucose-1-phosphate adenylyltransferase family protein isoform 1" /protein_id="EOY07425.1" /db_xref="Phytozome:POPTR_0006s09130.1" /db_xref="TAIR:AT2G39770.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D8M1B1" /translation="MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAI GVTEVVLAINYQPEIMLNFLKEFEKKLDIKITCSQETEPLGTAGPLALARDKLIDGSG EPFFVLNSDVISEYPLKEMIDFHKGHGGEASIMVTKVDEPSKYGVVVMEETTGKVEKF VEKPKIFVGNKINAGIYLLNPSVLDRIELRPTSIEKEVFPMIAGENKLYAMVLPGFWM DIGQPKDYITGLRLYLDSLRKKSSAELEAGSNIVGNVLVDESAVIGQGCLIGPDVAIG PGCIIESGVRLSRCTIMRGVRIKKHACISSSIIGWHSTVGRWARVENMTILGEDVHLG DEVYSNGGVVLPHKEIKSSILKPEIVM" CDS complement(join(1516567..1517238,1517328..1517567, 1517668..1517733,1518045..1518155)) /locus_tag="TCM_021865" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG042692t5" /codon_start=1 /product="Glucose-1-phosphate adenylyltransferase family protein isoform 3" /protein_id="EOY07426.1" /db_xref="Phytozome:POPTR_0006s09130.1" /db_xref="TAIR:AT2G39770.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D8M1B1" /translation="MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQQIEALKA IGVTEVVLAINYQPEIMLNFLKEFEKKLDIKITCSQETEPLGTAGPLALARDKLIDGS GEPFFVLNSDVISEYPLKEMIDFHKGHGGEASIMVTKVDEPSKYGVVVMEETTGKVEK FVEKPKIFVGNKINAGIYLLNPSVLDRIELRPTSIEKEVFPMIAGENKLYAMVLPGFW MDIGQPKDYITGLRLYLDSLRKKSSAELEAGSNIVGNVLVDESAVIGQGCLIGPDVAI GPGCIIESGVRLSRCTIMRGVRIKKHACISSSIIGWHSTVGRWARVENMTILGEDVHL GDEVYSNGGVVLPHKEIKSSILKPEIVM" gene complement(1520203..1523377) /locus_tag="TCM_021866" /note="dbxref CacaoGD:Thecc1EG021866" mRNA complement(join(1520203..1520700,1521155..1522210, 1522429..1522491,1522643..1523377)) /locus_tag="TCM_021866" /product="Kinase family protein" /inference="alignment:exonerate-protein:2:frave:gene18355" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021867t1" /inference="similar to AA sequence:ricco:29973.m000410" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.32 coverage" CDS complement(join(1520537..1520700,1521155..1522210, 1522429..1522491,1522643..1523345)) /locus_tag="TCM_021866" /note="dbxref ricco:29973.m000410; paralog of Thecc1EG021867t1" /codon_start=1 /product="Kinase family protein" /protein_id="EOY07427.1" /db_xref="TAIR:AT5G02070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZM4" /translation="MVRCSNCGRIPVPYPLSTGPNCGDQAYKIRCTAGALWFNALKGS YTITSINPLTQRIILQPPSLSGGTCISSDISTQGIQLDDNLPFNITSSNTVLLLNCTN AMLHLQAPINCTSTSICHNYIKDNAAACMNTPLCCVFKTGGSQTAYVVRIHDGGCLAY QSFVNFDTVNPPKKWPEPGLEIEWALPQEPVCKTPLDCKNLLHSKCLADPVNVGSSRC LCNKGFQWDPINGLCQSAKCRPGKRCKNPKKQTVLICGMAAALGGISLAIMIGILVYR QRQRVKKELQKNLIKEREEILNAKNHGKSTRVFTGKEITRATDNFSAANLIGSGGFGE VFKGVLDDGTVTAIKRAKLGNTKGTDQVLNEVRVLCQVNHRSLVRLLGCCVELDLPLM IYEFIPNGTLFDHLHYHLSGKYAPLTWQRRLRIAHQTAEGLAYLHSAAVPPIYHRDVK SSNILLDEKLNAKVSDFGLSRLVETTEAGDSHIHTSAQGTLGYLDPEYYRSFQLTDKS DVYSFGVVLLELLTSKKAIDFNREDENVNLVVYMKNIIDEERLMDVVDPVLKEGATNL ELETIIALGLLAASCLDDKRQDRPSMKEVADEIEYIISIATGPFNIEDQIVISISIEL VNGSLCIFLVNEIDKSKTSVQIRLMITGNVDISYLSK" gene complement(1523955..1530973) /locus_tag="TCM_021867" /note="dbxref CacaoGD:Thecc1EG021867" mRNA complement(join(1523955..1524131,1525275..1526319, 1526419..1526481,1527096..1528427,1529972..1530116, 1530470..1530973)) /locus_tag="TCM_021867" /product="Kinase superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Sb03g044740.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021866t1" /inference="similar to AA sequence:ricco:29973.m000410" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.18 coverage" CDS complement(join(1524041..1524131,1525275..1526319, 1526419..1526481,1527096..1527870)) /locus_tag="TCM_021867" /note="dbxref ricco:29973.m000410; paralog of Thecc1EG021866t1" /codon_start=1 /product="Kinase superfamily protein, putative" /protein_id="EOY07428.1" /db_xref="TAIR:AT3G53840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M342" /translation="MLPLLILTMAMLVSTDPVMALKLCPNCGRMSVPYPLSTGPDCGD PWYKVRCNAGTLRLDGLNGSSYMITSINPMTQTLIIRPPGFAQNTCMAADFGSQGIQL DSNLPFNITSTNTVMIMNCSIAVLQEYAALNCSSTSICHDYIKGNQEARAKCRALPVC CWFVTGGTVHAHRIRVRPERCSAYQSFVNLDMNLPVSKWPAPGLEIEWLTPEEPRCKL PEDCNGLLNSVCLPDPVNVGQRRCLCKSGFQWDPIHGICRDVKCKHGRSCKHQKKKTS ILGGAAFAGGAILIGLIITIVIIYKQRKHCEREAEVSLTKAHKDLLISNTGKLAKFFT SKEIAKATNDFSKDKLLGSGGFGEVFKGILDDGTRIAVKRAKLGNAKGVDQIINEVRI LCQVNHRNLVKLLGCCVELQQPLLIYEYIPNGNLFDHLHMAFSGKGVTLSWHRRLGIA YQTAQGLAYLHSSVVPPIYHRDIKSSNILLDENLDAKVSNFGLPRLGLSDVSHVTTCA QGTLGYLDPEYYLNFQLTEKSDVYSFGVVLLELLTSKKAIDFNREEEDVNLVVFARKI LKEERFMDIIDPNLIQGAGKMELETMKALGFLAESCLNERRQNRPSMKAVAQEIESLM SVVNRAFGSEPIAVMMISTCMRRAMLQPERCGI" mobile_element 1528102..1528411 /note="source:INTACT165_F160_scaffold_9-int 1 297" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(1528134..1529076) /note="source:INTACT434_F213_scaffold_2-int 4061 5031" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 1529078..1531249 /note="source:INTACT117_F146_scaffold_2-int 1 2211" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1531249..1535233) /note="source:INTACT434_F213_scaffold_2-int 42 4065" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 1536706..1537068 /note="source:INTACT44_F119_scaffold_6-int 2189 2550" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(1537191..1538562) /locus_tag="TCM_021870" /note="dbxref CacaoGD:Thecc1EG021870" mRNA complement(1537191..1538562) /locus_tag="TCM_021870" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene18355" /inference="similar to AA sequence:Phytozome:POPTR_0006s09110.1" /note="quality class is medium-utrpoor, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.77 coverage" mobile_element 1537280..1537360 /note="source:INTACT433_F212_scaffold_1-int 3052 3135" /mobile_element_type="retrotransposon:LTR/Copia" CDS complement(1538093..1538386) /locus_tag="TCM_021870" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07429.1" /db_xref="Phytozome:POPTR_0006s09110.1" /translation="MEGLIPFVYRAIVQHKNGREGVLATWFSESPSASYMRLPTGDSG RFQVSDKQVFQSDYGDFSASSPSSMAASSTTQIILSTGVQSPVCRLTSRRVVA" mobile_element complement(1540276..1540360) /note="source:CACAO_on_SS_E135_scaffold_10 7196 7280" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(1540459..1541027) /note="source:CACAO_on_SS_E135_scaffold_10 6647 7202" /mobile_element_type="transposon:TIR/Mutator" mobile_element 1546012..1546096 /note="source:scaffold_4_CACTA_0510 5793 5877" /mobile_element_type="transposon:TIR/CACTA" gene 1547654..1552039 /locus_tag="TCM_021871" /note="dbxref CacaoGD:Thecc1EG021871" mRNA join(1547654..1548125,1548324..1548733,1548844..1548925, 1549977..1550248,1550615..1550738,1551004..1552039) /locus_tag="TCM_021871" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene04701" /inference="similar to AA sequence:frave:gene24361" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS join(1547846..1548125,1548324..1548733,1548844..1548925, 1549977..1550248,1550615..1550738,1551004..1551770) /locus_tag="TCM_021871" /note="dbxref frave:gene24361" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07430.1" /translation="MAIINKMCVHGEKMEHMTVVEKILRSMTPKFNYVVCAIDESKDL DDLSIDELQGSLLVHEQKLSFQDKGEQALKASSNNSSSTSNSSDQGRGKDSSKENGGR ADFAKIEENVSLLMVCHANEETHKNLWYLDTSCINHKFRDKSVFSYLNESYRDIVKFG DNFQVSMIGKGKVTIQTKENLVHYITIVLFVSKLKTNLLDMGKLPKKGYVIFIKNGVC KIKDEKLGLIVQTSEFWWIKDTSSKEYGGWSPLTSSFSSTFKDVVKEPKWQKAMDDEI SAIKRNNIWELTDLLSNQKTIRVKWVYKTKFEENGEVDKYKPCLVAKGYKPKYGVDYK EIFVPVSRRDTIRLGPLQGIVWFGSILCAPLQLKWLKAFPSGGAKGLGFDPRDQKVNT PIEFGLKLTRDPERKKVDSTLYKQIVGSLMYMDAIRPDIMHVVSLISKYMESSREVHV LVANVLWNMDCSTRKGEKSDLICFTDSDYARDRDDRKSTLGFVFMLGSGAISWSSRKQ PIVTLSTIEAKFVAATSCACQVVWLKRILEDLCLRNEKPIVIYCDNSSTIKLSNNPVL HERNKHINVRYHFLRDLCNNGIIDLVFCKSKDQVDDILNKPLKQARCVCEASKNAWSM LFKECCSREGIAEVLKFIYS" mobile_element 1547959..1548005 /note="source:CACAO_M_S_E15589_F14_scaffold_2 2341 2396" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1550590..1550646 /note="source:INTACT735_F7_scaffold_8-int 4572 4630" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 1550598..1550827 /note="source:MITE_Unknow_TSD_5_10 1 230" /mobile_element_type="transposon:TIR/MITE" mobile_element 1556943..1557082 /note="source:CACAO_Mutator_E1430_scaffold_6 1161 1298" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(1558562..1558663) /note="source:scaffold_8_CACTA_0858 14195 14297" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1558657..1558749 /note="source:scaffold_3_CACTA_0377 2474 2572" /mobile_element_type="transposon:TIR/CACTA" gene 1559104..1568689 /locus_tag="TCM_021872" /note="dbxref CacaoGD:Thecc1EG021872" mRNA join(1559104..1559727,1560437..1560637,1560988..1561081, 1561178..1561219,1561414..1561473,1561922..1563010, 1563115..1563216,1563580..1563726,1563827..1563952, 1565581..>1565761) /locus_tag="TCM_021872" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 7" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034110001" /inference="similar to AA sequence:Phytozome:GSVIVT01034110001" /note="transcript variant 7; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.63 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc300t21_C2; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc300t21_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1339t1" mRNA join(1559104..1559727,1560437..1560637,1560988..1561081, 1561178..1561219,1561414..1561473,1561922..1563010, 1563115..1563216,1563580..1563726,1563827..1563952, 1564055..1564615,1564707..1565166) /locus_tag="TCM_021872" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034110001" /inference="similar to AA sequence:Phytozome:GSVIVT01034110001" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc300t24; alternateUTRof:Thecc1EG021872t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1339t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc300t21_C2" mRNA join(1559217..1559727,1560437..1560637,1560988..1561081, 1561178..1561219,1561414..1561473,1561922..1563010, 1563115..1563216,1563580..1563726,1563827..1563952, 1564055..1565547) /locus_tag="TCM_021872" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034110001" /inference="similar to AA sequence:Phytozome:GSVIVT01034110001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1339t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1339t1" CDS join(1559630..1559727,1560437..1560637,1560988..1561081, 1561178..1561219,1561414..1561473,1561922..1563010, 1563115..1563216,1563580..1563726,1563827..1563952, 1565581..>1565760) /locus_tag="TCM_021872" /note="encoded by transcript variant 7; alternatively spliced" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 7" /protein_id="EOY07437.1" /db_xref="Phytozome:GSVIVT01034110001" /db_xref="TAIR:AT1G06150.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7THI8" /translation="MGTSALRQLLKSFCSNSPWKYAVLWKLRHRSPMSLTWEDGYCVY PRPRESVESISSDVHSNSEIIPSHFETSIHDGCFGGYPIGLVVANMSHLKYAWGEGVV GKVAYTGKHCWVSYDDIFTGKANSKLVPECPEEWLLQFASGIKTIVLVPVLPHGVFQL GSLEMVPEDLSTPAYIKDRFSCKDIHTQLPSLLTSSLLEKLEESSSASISPLNSEDSN AVDGIKPLSIQNAFQVPEIDLPEVLESEGENKISVPPVSLSEVSSPLSQSINSYQLAM GESEMFGLSCIKEELWANPEYNGYTVGECGEILDGVTYPYPASDLLEPPFGDFSVYDA GFLSFPKDCELHKALGPAFEKQSNEYFWESSFLTEDVFRDLFDDIEPSFAKGGDAEYL LQAVVGHVYDGSVDIANRSNHFMTSTGQLPVSIRPQSVMGDSIPVSRVTSALVGEAKN NSSSKTSASFKSTVSTLTDDKNLGKDCYYMQSRKGQKQSSVTKRRARLGDNPRPRPRD RQMIQDRLKELRELVPNGDKHSIDALLDHTVKHMRYLSSVTNQAEKLKQWVHREVTVR KNMRSSESKDCYQMGASWAFEIGDELKACPIVVEDLAYPGHFLIEMLCNEHCLFLEIA QVIRSFNLTILKGVMESCSNNTWAHFIVEPAQHQYPAVQTDYHQRHILGHQQLCKRYA TGQQQLLGLVYPKKKKRKLVSKDHLYFLGHT" CDS join(1559630..1559727,1560437..1560637,1560988..1561081, 1561178..1561219,1561414..1561473,1561922..1563010, 1563115..1563216,1563580..1563726,1563827..1563952, 1564055..1564144) /locus_tag="TCM_021872" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1" /protein_id="EOY07431.1" /db_xref="Phytozome:GSVIVT01034110001" /db_xref="TAIR:AT1G06150.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7THI8" /translation="MGTSALRQLLKSFCSNSPWKYAVLWKLRHRSPMSLTWEDGYCVY PRPRESVESISSDVHSNSEIIPSHFETSIHDGCFGGYPIGLVVANMSHLKYAWGEGVV GKVAYTGKHCWVSYDDIFTGKANSKLVPECPEEWLLQFASGIKTIVLVPVLPHGVFQL GSLEMVPEDLSTPAYIKDRFSCKDIHTQLPSLLTSSLLEKLEESSSASISPLNSEDSN AVDGIKPLSIQNAFQVPEIDLPEVLESEGENKISVPPVSLSEVSSPLSQSINSYQLAM GESEMFGLSCIKEELWANPEYNGYTVGECGEILDGVTYPYPASDLLEPPFGDFSVYDA GFLSFPKDCELHKALGPAFEKQSNEYFWESSFLTEDVFRDLFDDIEPSFAKGGDAEYL LQAVVGHVYDGSVDIANRSNHFMTSTGQLPVSIRPQSVMGDSIPVSRVTSALVGEAKN NSSSKTSASFKSTVSTLTDDKNLGKDCYYMQSRKGQKQSSVTKRRARLGDNPRPRPRD RQMIQDRLKELRELVPNGDKHSIDALLDHTVKHMRYLSSVTNQAEKLKQWVHREVTVR KNMRSSESKDCYQMGASWAFEIGDELKACPIVVEDLAYPGHFLIEMLCNEHCLFLEIA QVIRSFNLTILKGVMESCSNNTWAHFIVEASRGFHRLDIFWPLMQLLQRQRNPISSKI " CDS join(1559630..1559727,1560437..1560637,1560988..1561081, 1561178..1561219,1561414..1561473,1561922..1563010, 1563115..1563216,1563580..1563726,1563827..1563952, 1564055..1564144) /locus_tag="TCM_021872" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1" /protein_id="EOY07436.1" /db_xref="Phytozome:GSVIVT01034110001" /db_xref="TAIR:AT1G06150.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7THI8" /translation="MGTSALRQLLKSFCSNSPWKYAVLWKLRHRSPMSLTWEDGYCVY PRPRESVESISSDVHSNSEIIPSHFETSIHDGCFGGYPIGLVVANMSHLKYAWGEGVV GKVAYTGKHCWVSYDDIFTGKANSKLVPECPEEWLLQFASGIKTIVLVPVLPHGVFQL GSLEMVPEDLSTPAYIKDRFSCKDIHTQLPSLLTSSLLEKLEESSSASISPLNSEDSN AVDGIKPLSIQNAFQVPEIDLPEVLESEGENKISVPPVSLSEVSSPLSQSINSYQLAM GESEMFGLSCIKEELWANPEYNGYTVGECGEILDGVTYPYPASDLLEPPFGDFSVYDA GFLSFPKDCELHKALGPAFEKQSNEYFWESSFLTEDVFRDLFDDIEPSFAKGGDAEYL LQAVVGHVYDGSVDIANRSNHFMTSTGQLPVSIRPQSVMGDSIPVSRVTSALVGEAKN NSSSKTSASFKSTVSTLTDDKNLGKDCYYMQSRKGQKQSSVTKRRARLGDNPRPRPRD RQMIQDRLKELRELVPNGDKHSIDALLDHTVKHMRYLSSVTNQAEKLKQWVHREVTVR KNMRSSESKDCYQMGASWAFEIGDELKACPIVVEDLAYPGHFLIEMLCNEHCLFLEIA QVIRSFNLTILKGVMESCSNNTWAHFIVEASRGFHRLDIFWPLMQLLQRQRNPISSKI " mRNA join(1559703..1559727,1560437..1560637,1560988..1561081, 1561178..1561219,1561414..1561473,1561922..1563010, 1563115..1563216,1563580..1563726,1563827..1563952, 1564055..1564617,1564708..1564750,1565143..1565236, 1565581..1565761,1566121..1566163,1566458..1566778, 1566871..1567107,1567203..1567335,1567813..1567895, 1568016..1568090,1568369..1568689) /locus_tag="TCM_021872" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034110001" /inference="similar to AA sequence:Phytozome:GSVIVT01034110001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00170t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1339t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc300t21_C2" mRNA join(1559703..1559727,1560437..1560637,1560988..1561081, 1561178..1561219,1561414..1561473,1561922..1563010, 1563115..1563216,1563580..1563726,1563827..1563952, 1564055..1564617,1564708..1564750,1565143..1565236, 1565581..1565761,1566121..1566163,1566458..1566706, 1566876..1567107,1567203..1567335,1567813..1567895, 1568016..1568090,1568369..1568689) /locus_tag="TCM_021872" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034110001" /inference="similar to AA sequence:Phytozome:GSVIVT01034110001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00170t00003; alternateUTRof:Thecc1EG021872t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1339t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc300t21_C2" mRNA join(1559703..1559727,1560437..1560637,1560988..1561081, 1561178..1561219,1561414..1561473,1561922..1563010, 1563115..1563216,1563580..1563726,1563827..1563952, 1564055..1564617,1564708..1564750,1565143..1565236, 1565581..1565761,1566121..1566163,1566458..1566778, 1566871..1567107,1567203..1567334,1567614..1567714) /locus_tag="TCM_021872" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034110001" /inference="similar to AA sequence:Phytozome:GSVIVT01034110001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00170t00002; alternateUTRof:Thecc1EG021872t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1339t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc300t21_C2" mRNA join(1559703..1559727,1560437..1560637,1560988..1561081, 1561178..1561219,1561414..1561473,1561922..1563010, 1563115..1563216,1563580..1563726,1563827..1563952, 1564055..1564617,1564708..1564750,1565143..1565236, 1565581..1565761,1566121..1566163,1566458..1566706, 1566876..1567107,1567203..1567334,1567614..1567714) /locus_tag="TCM_021872" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034110001" /inference="similar to AA sequence:Phytozome:GSVIVT01034110001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00170t00004; alternateUTRof:Thecc1EG021872t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1339t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc300t21_C2" CDS join(1559726..1559727,1560437..1560637,1560988..1561081, 1561178..1561219,1561414..1561473,1561922..1563010, 1563115..1563216,1563580..1563726,1563827..1563952, 1564055..1564144) /locus_tag="TCM_021872" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 2" /protein_id="EOY07432.1" /db_xref="Phytozome:GSVIVT01034110001" /db_xref="TAIR:AT1G06150.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7THI8" /translation="MSLTWEDGYCVYPRPRESVESISSDVHSNSEIIPSHFETSIHDG CFGGYPIGLVVANMSHLKYAWGEGVVGKVAYTGKHCWVSYDDIFTGKANSKLVPECPE EWLLQFASGIKTIVLVPVLPHGVFQLGSLEMVPEDLSTPAYIKDRFSCKDIHTQLPSL LTSSLLEKLEESSSASISPLNSEDSNAVDGIKPLSIQNAFQVPEIDLPEVLESEGENK ISVPPVSLSEVSSPLSQSINSYQLAMGESEMFGLSCIKEELWANPEYNGYTVGECGEI LDGVTYPYPASDLLEPPFGDFSVYDAGFLSFPKDCELHKALGPAFEKQSNEYFWESSF LTEDVFRDLFDDIEPSFAKGGDAEYLLQAVVGHVYDGSVDIANRSNHFMTSTGQLPVS IRPQSVMGDSIPVSRVTSALVGEAKNNSSSKTSASFKSTVSTLTDDKNLGKDCYYMQS RKGQKQSSVTKRRARLGDNPRPRPRDRQMIQDRLKELRELVPNGDKHSIDALLDHTVK HMRYLSSVTNQAEKLKQWVHREVTVRKNMRSSESKDCYQMGASWAFEIGDELKACPIV VEDLAYPGHFLIEMLCNEHCLFLEIAQVIRSFNLTILKGVMESCSNNTWAHFIVEASR GFHRLDIFWPLMQLLQRQRNPISSKI" CDS join(1559726..1559727,1560437..1560637,1560988..1561081, 1561178..1561219,1561414..1561473,1561922..1563010, 1563115..1563216,1563580..1563726,1563827..1563952, 1564055..1564144) /locus_tag="TCM_021872" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 2" /protein_id="EOY07433.1" /db_xref="Phytozome:GSVIVT01034110001" /db_xref="TAIR:AT1G06150.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7THI8" /translation="MSLTWEDGYCVYPRPRESVESISSDVHSNSEIIPSHFETSIHDG CFGGYPIGLVVANMSHLKYAWGEGVVGKVAYTGKHCWVSYDDIFTGKANSKLVPECPE EWLLQFASGIKTIVLVPVLPHGVFQLGSLEMVPEDLSTPAYIKDRFSCKDIHTQLPSL LTSSLLEKLEESSSASISPLNSEDSNAVDGIKPLSIQNAFQVPEIDLPEVLESEGENK ISVPPVSLSEVSSPLSQSINSYQLAMGESEMFGLSCIKEELWANPEYNGYTVGECGEI LDGVTYPYPASDLLEPPFGDFSVYDAGFLSFPKDCELHKALGPAFEKQSNEYFWESSF LTEDVFRDLFDDIEPSFAKGGDAEYLLQAVVGHVYDGSVDIANRSNHFMTSTGQLPVS IRPQSVMGDSIPVSRVTSALVGEAKNNSSSKTSASFKSTVSTLTDDKNLGKDCYYMQS RKGQKQSSVTKRRARLGDNPRPRPRDRQMIQDRLKELRELVPNGDKHSIDALLDHTVK HMRYLSSVTNQAEKLKQWVHREVTVRKNMRSSESKDCYQMGASWAFEIGDELKACPIV VEDLAYPGHFLIEMLCNEHCLFLEIAQVIRSFNLTILKGVMESCSNNTWAHFIVEASR GFHRLDIFWPLMQLLQRQRNPISSKI" CDS join(1559726..1559727,1560437..1560637,1560988..1561081, 1561178..1561219,1561414..1561473,1561922..1563010, 1563115..1563216,1563580..1563726,1563827..1563952, 1564055..1564144) /locus_tag="TCM_021872" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 2" /protein_id="EOY07434.1" /db_xref="Phytozome:GSVIVT01034110001" /db_xref="TAIR:AT1G06150.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7THI8" /translation="MSLTWEDGYCVYPRPRESVESISSDVHSNSEIIPSHFETSIHDG CFGGYPIGLVVANMSHLKYAWGEGVVGKVAYTGKHCWVSYDDIFTGKANSKLVPECPE EWLLQFASGIKTIVLVPVLPHGVFQLGSLEMVPEDLSTPAYIKDRFSCKDIHTQLPSL LTSSLLEKLEESSSASISPLNSEDSNAVDGIKPLSIQNAFQVPEIDLPEVLESEGENK ISVPPVSLSEVSSPLSQSINSYQLAMGESEMFGLSCIKEELWANPEYNGYTVGECGEI LDGVTYPYPASDLLEPPFGDFSVYDAGFLSFPKDCELHKALGPAFEKQSNEYFWESSF LTEDVFRDLFDDIEPSFAKGGDAEYLLQAVVGHVYDGSVDIANRSNHFMTSTGQLPVS IRPQSVMGDSIPVSRVTSALVGEAKNNSSSKTSASFKSTVSTLTDDKNLGKDCYYMQS RKGQKQSSVTKRRARLGDNPRPRPRDRQMIQDRLKELRELVPNGDKHSIDALLDHTVK HMRYLSSVTNQAEKLKQWVHREVTVRKNMRSSESKDCYQMGASWAFEIGDELKACPIV VEDLAYPGHFLIEMLCNEHCLFLEIAQVIRSFNLTILKGVMESCSNNTWAHFIVEASR GFHRLDIFWPLMQLLQRQRNPISSKI" CDS join(1559726..1559727,1560437..1560637,1560988..1561081, 1561178..1561219,1561414..1561473,1561922..1563010, 1563115..1563216,1563580..1563726,1563827..1563952, 1564055..1564144) /locus_tag="TCM_021872" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 2" /protein_id="EOY07435.1" /db_xref="Phytozome:GSVIVT01034110001" /db_xref="TAIR:AT1G06150.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7THI8" /translation="MSLTWEDGYCVYPRPRESVESISSDVHSNSEIIPSHFETSIHDG CFGGYPIGLVVANMSHLKYAWGEGVVGKVAYTGKHCWVSYDDIFTGKANSKLVPECPE EWLLQFASGIKTIVLVPVLPHGVFQLGSLEMVPEDLSTPAYIKDRFSCKDIHTQLPSL LTSSLLEKLEESSSASISPLNSEDSNAVDGIKPLSIQNAFQVPEIDLPEVLESEGENK ISVPPVSLSEVSSPLSQSINSYQLAMGESEMFGLSCIKEELWANPEYNGYTVGECGEI LDGVTYPYPASDLLEPPFGDFSVYDAGFLSFPKDCELHKALGPAFEKQSNEYFWESSF LTEDVFRDLFDDIEPSFAKGGDAEYLLQAVVGHVYDGSVDIANRSNHFMTSTGQLPVS IRPQSVMGDSIPVSRVTSALVGEAKNNSSSKTSASFKSTVSTLTDDKNLGKDCYYMQS RKGQKQSSVTKRRARLGDNPRPRPRDRQMIQDRLKELRELVPNGDKHSIDALLDHTVK HMRYLSSVTNQAEKLKQWVHREVTVRKNMRSSESKDCYQMGASWAFEIGDELKACPIV VEDLAYPGHFLIEMLCNEHCLFLEIAQVIRSFNLTILKGVMESCSNNTWAHFIVEASR GFHRLDIFWPLMQLLQRQRNPISSKI" mRNA join(1561450..1561801,1561922..1563010,1563115..1563216, 1563580..1563726,1563827..1563952,1564055..1564615, 1564707..1565166) /locus_tag="TCM_021872" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 8" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034110001" /inference="similar to AA sequence:Phytozome:POPTR_0006s09100.1" /note="transcript variant 8; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc300t15; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1339t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc300t21_C2" CDS join(1561778..1561801,1561922..1563010,1563115..1563216, 1563580..1563726,1563827..1563952,1564055..1564144) /locus_tag="TCM_021872" /note="encoded by transcript variant 8; alternatively spliced" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 8" /protein_id="EOY07438.1" /db_xref="Phytozome:POPTR_0006s09100.1" /db_xref="TAIR:AT1G06150.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HC36" /translation="MSLYMFLRVPEDLSTPAYIKDRFSCKDIHTQLPSLLTSSLLEKL EESSSASISPLNSEDSNAVDGIKPLSIQNAFQVPEIDLPEVLESEGENKISVPPVSLS EVSSPLSQSINSYQLAMGESEMFGLSCIKEELWANPEYNGYTVGECGEILDGVTYPYP ASDLLEPPFGDFSVYDAGFLSFPKDCELHKALGPAFEKQSNEYFWESSFLTEDVFRDL FDDIEPSFAKGGDAEYLLQAVVGHVYDGSVDIANRSNHFMTSTGQLPVSIRPQSVMGD SIPVSRVTSALVGEAKNNSSSKTSASFKSTVSTLTDDKNLGKDCYYMQSRKGQKQSSV TKRRARLGDNPRPRPRDRQMIQDRLKELRELVPNGDKHSIDALLDHTVKHMRYLSSVT NQAEKLKQWVHREVTVRKNMRSSESKDCYQMGASWAFEIGDELKACPIVVEDLAYPGH FLIEMLCNEHCLFLEIAQVIRSFNLTILKGVMESCSNNTWAHFIVEASRGFHRLDIFW PLMQLLQRQRNPISSKI" gene complement(1563990..1568691) /locus_tag="TCM_021873" /note="dbxref CacaoGD:Thecc1EG021873" mRNA complement(join(1563990..1564614,1564705..1564748, 1565141..1565231,1565576..1565758,1566118..1566161, 1566456..1566695,1566869..1567105,1567201..1567332, 1567810..1567894,1568015..1568088,1568367..1568691)) /locus_tag="TCM_021873" /product="Regulator of chromosome condensation (RCC1) family protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene18353" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042741t3" /inference="similar to AA sequence:Phytozome:Glyma11g34470.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1337t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1337t4" mRNA complement(join(1564466..1564614,1564705..1564748, 1565141..1565231,1565576..1565758,1566118..1566161, 1566456..1566695,1567810..1567894,1568015..1568088, 1568367..1568651)) /locus_tag="TCM_021873" /product="Regulator of chromosome condensation family protein isoform 3" /inference="alignment:exonerate-protein:2:frave:gene18353" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042741t3" /inference="similar to AA sequence:ricco:28670.m000105" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc292t14; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1337t4" CDS complement(join(1564477..1564614,1564705..1564748, 1565141..1565231,1565576..1565758,1566118..1566161, 1566456..1566695,1567810..1567894,1568015..1568088, 1568367..1568562)) /locus_tag="TCM_021873" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:28670.m000105; paralog of Thecc1EG042741t3" /codon_start=1 /product="Regulator of chromosome condensation family protein isoform 3" /protein_id="EOY07441.1" /db_xref="TAIR:AT3G53830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7THI9" /translation="MNGNETEGVKMEECKEMAVYMWGYLPGASPEKSPMLSPVPVRLP TSASSWKDVCGGGCGFAMAISDCGKLITWGSADDEGQSYLTSGKHGETPEPFALPTEA SIVKAGAGWAHCVSVTDMGQVWGWGYGGEGQLGLGSRIKMVSSPHLIPCIEQTTSGKD RSQAVHQGSLSSQMQLSKAYGSYVKEITCGGRHSAVITDAGALLTFGWGLYGQCGQGS TSDLLKPTCVSSFSGIQVLGVAAGLWHTVCIAVDGQVYAFGGNQFGQLGTGAEQAETS PRQLDAASLEGKHAKMVSCGARHSAILTDDGRVLSWGWNKYGQLGLGDTIDRNTPAPV PIDGCLPKNVACGWWHTLLLAETPIWAPNS" CDS complement(join(1564477..1564614,1564705..1564748, 1565141..1565231,1565576..1565758,1566118..1566161, 1566456..1566695,1566869..1567105,1567201..1567332, 1567810..1567894,1568015..1568088,1568367..1568562)) /locus_tag="TCM_021873" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042741t3" /codon_start=1 /product="Regulator of chromosome condensation (RCC1) family protein isoform 1" /protein_id="EOY07439.1" /db_xref="Phytozome:Glyma11g34470.1" /db_xref="TAIR:AT3G53830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7THI9" /translation="MNGNETEGVKMEECKEMAVYMWGYLPGASPEKSPMLSPVPVRLP TSASSWKDVCGGGCGFAMAISDCGKLITWGSADDEGQSYLTSGKHGETPEPFALPTEA SIVKAGAGWAHCVSVTDKGEGYTWGWKECVPSGKITHDWVIGGSFEKDIVGKQTTLQT EQVSPKSRGSNVSGGTVSQTENRKAGEETAKRRRISAAKEEHESLTSGVEFFTVSPCL VTLGPGVKITSVAAGGRHTLALSDMGQVWGWGYGGEGQLGLGSRIKMVSSPHLIPCIE QTTSGKDRSQAVHQGSLSSQMQLSKAYGSYVKEITCGGRHSAVITDAGALLTFGWGLY GQCGQGSTSDLLKPTCVSSFSGIQVLGVAAGLWHTVCIAVDGQVYAFGGNQFGQLGTG AEQAETSPRQLDAASLEGKHAKMVSCGARHSAILTDDGRVLSWGWNKYGQLGLGDTID RNTPAPVPIDGCLPKNVACGWWHTLLLAETPIWAPNS" mRNA complement(join(1564729..1564748,1565141..1565758, 1566118..1566161,1566456..1566695,1566869..1567105, 1567201..1567332,1567810..1567894,1568015..1568088, 1568367..1568650)) /locus_tag="TCM_021873" /product="Regulator of chromosome condensation family protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene18353" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042741t4" /inference="similar to AA sequence:Phytozome:Glyma11g34470.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc300t20_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1337t4" CDS complement(join(1565480..1565758,1566118..1566161, 1566456..1566695,1566869..1567105,1567201..1567332, 1567810..1567894,1568015..1568088,1568367..1568562)) /locus_tag="TCM_021873" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042741t4" /codon_start=1 /product="Regulator of chromosome condensation family protein isoform 2" /protein_id="EOY07440.1" /db_xref="Phytozome:Glyma11g34470.2" /db_xref="TAIR:AT3G53830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7THI9" /translation="MNGNETEGVKMEECKEMAVYMWGYLPGASPEKSPMLSPVPVRLP TSASSWKDVCGGGCGFAMAISDCGKLITWGSADDEGQSYLTSGKHGETPEPFALPTEA SIVKAGAGWAHCVSVTDKGEGYTWGWKECVPSGKITHDWVIGGSFEKDIVGKQTTLQT EQVSPKSRGSNVSGGTVSQTENRKAGEETAKRRRISAAKEEHESLTSGVEFFTVSPCL VTLGPGVKITSVAAGGRHTLALSDMGQVWGWGYGGEGQLGLGSRIKMVSSPHLIPCIE QTTSGKDRSQAVHQGSLSSQMQLSKAYGSYVKEITCGGRHSAVITDAGALLTFGWGLY GQCGQGSTSDLLKPTCVSSFSGIQVLGVAAGLWHTVCIAVDGQVYAFGGNQFGQLGTG AEQAEVYLNAVIYFTLVIYSSRGQWKQEVYMSLPKC" gene complement(1570268..1573767) /locus_tag="TCM_021874" /note="dbxref CacaoGD:Thecc1EG021874" mRNA complement(join(1570268..1570707,1570779..1570848, 1572138..1572295,1572388..1572494,1572582..1572798, 1573253..1573460,1573602..1573751)) /locus_tag="TCM_021874" /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene18349" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042735t1" /inference="similar to AA sequence:frave:gene18349" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g10443t00001" CDS complement(join(1570510..1570707,1570779..1570848, 1572138..1572295,1572388..1572494,1572582..1572798, 1573253..1573460,1573602..1573690)) /locus_tag="TCM_021874" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene18349; paralog of Thecc1EG042735t1" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 1" /protein_id="EOY07442.1" /db_xref="TAIR:AT2G29150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HL77" /translation="MAGAGPGCKNQRWSLQGMTALVTGGTRGIGYAIVEELAALGAVV HTCSRNQTEINERLQEWQSKGFKVSGSVCDLSSREQREKLMETVSSVFYGKLNILVNN AGITMLKPCVEHTLEDYSTVMSTNVEAPYHLSQLAHPFLKASGNGSIVFISSVAGSLA LPRLSAYSASKGAINQITKNLACEWAKDNIRTNTVSPWGVKTTIMIPKPDSPYVEEFI RLIAGTAMPRTGEPEEISSLVAFLCLPAASYITGQVISVDGGSMFHCNDIDQSVEEQD SGQKLVTLRMKLICKSKRVCYHICQLALPLLRLSRNGSIAGVVASPYLSLYAGSFLPS LEAVLIMTLHLWKF" mRNA complement(join(1571862..1572292,1572388..1572494, 1572582..1572798,1573253..1573460,1573602..1573767)) /locus_tag="TCM_021874" /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene18349" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042735t1" /inference="similar to AA sequence:frave:gene18349" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1094t2; inference alignment:Newbler:10:TSA:cgbaP2_g10443t00001" CDS complement(join(1572077..1572292,1572388..1572494, 1572582..1572798,1573253..1573460,1573602..1573690)) /locus_tag="TCM_021874" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene18349; paralog of Thecc1EG042735t1" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 2" /protein_id="EOY07443.1" /db_xref="TAIR:AT5G06060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HL77" /translation="MAGAGPGCKNQRWSLQGMTALVTGGTRGIGYAIVEELAALGAVV HTCSRNQTEINERLQEWQSKGFKVSGSVCDLSSREQREKLMETVSSVFYGKLNILVNN AGITMLKPCVEHTLEDYSTVMSTNVEAPYHLSQLAHPFLKASGNGSIVFISSVAGSLA LPRLSAYSASKGAINQITKNLACEWAKDNIRTNTVSPWGVKTTIMIPPDSPYVEEFIR LIAGTAMPRTGEPEEISSLVAFLCLPAASYITGQVISVDGGYTAGGCWPFQNFSFTSF GP" mobile_element 1574333..1574432 /note="source:CACAO_M_E43482_F345_scaffold_5 1159 1280" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1574633..1575866) /note="source:scaffold_5_CACTA_0614 1444 2645" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1576909..1576994) /note="source:scaffold_1_CACTA_0005 6272 6356" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1581752..1581870) /note="source:scaffold_4_CACTA_0506 6424 6542" /mobile_element_type="transposon:TIR/CACTA" gene 1582392..1583864 /locus_tag="TCM_021875" /note="dbxref CacaoGD:Thecc1EG021875" mRNA 1582392..1583864 /locus_tag="TCM_021875" /product="Zinc-finger protein 10, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s10460.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s10460.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1072t1" CDS 1582564..1583481 /locus_tag="TCM_021875" /codon_start=1 /product="Zinc-finger protein 10, putative" /protein_id="EOY07444.1" /db_xref="Phytozome:POPTR_0016s10460.1" /db_xref="TAIR:AT2G37740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HBV3" /translation="MEQARYWMWTKRRHGLSSHLQASTYAAYDDSWEEQAFAEDAAGS LGGCIWPPRSYSCSFCGREFRSAQALGGHMNVHRRDRARLKQSPTPHGETIHHHDHQN SQSHIQNPFLPMGFQYQPDEVCNFVYNPNPNSDHGTLTSPSTSSRVSPPPTKENCPGK ILIPTFSSPIVQERPKTKSPDSSPKSWSNLVADRYYHFSDLSTEGEKSPRILESGCKV KADYVQTDMSVSLNLVVRRARPTTSGSREETVGCKRKRTDTPTLPFFLKPISIERHHL QPADLPELRPSSVDDIDLELRLGDRPKVK" gene 1590197..1590944 /locus_tag="TCM_021876" /note="dbxref CacaoGD:Thecc1EG021876" mRNA 1590197..1590944 /locus_tag="TCM_021876" /product="C2H2 and C2HC zinc fingers superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:28345.m000111" /inference="similar to AA sequence:Phytozome:POPTR_0016s10480.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2855t1_C1" CDS 1590380..1590889 /locus_tag="TCM_021876" /codon_start=1 /product="C2H2 and C2HC zinc fingers superfamily protein, putative" /protein_id="EOY07445.1" /db_xref="Phytozome:POPTR_0016s10480.1" /translation="METKHPKVEKSDHIVWSLEDLPGQAKSYTCSFCKKGFSNAQALG GHMNIHRKDRAKLRESSEENILPLDMLKTINPPDDHSQVSEIILESSEEKSSSPRRPS KLSREDDGGSASVSPGGKVAIKTSGESEKESLRLIHGWTSQIELDLELRLGPDPHQDQ TTKSTRECF" mobile_element 1591881..1592647 /note="source:INTACT687_F13_scaffold_3-int 1283 2055" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1592759..1593102) /note="source:CACAO_Mariner_E176_scaffold_6 442 781" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 1592984..1593189 /note="source:scaffold_4_CACTA_0505 9591 9802" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1593326..1593627 /note="source:scaffold_4_CACTA_0505 9946 10252" /mobile_element_type="transposon:TIR/CACTA" gene 1593713..1598637 /locus_tag="TCM_021877" /note="dbxref CacaoGD:Thecc1EG021877" mRNA join(1593713..1593768,1595462..1596344,1596419..1596964, 1597564..1598637) /locus_tag="TCM_021877" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s09010.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042733t2" /inference="similar to AA sequence:Phytozome:POPTR_0006s09010.1" /note="quality class is strong, express is medium, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1723t1_C2" CDS join(1595472..1596344,1596419..1596964,1597564..1597674) /locus_tag="TCM_021877" /note="paralog of Thecc1EG042733t2" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07446.1" /db_xref="Phytozome:POPTR_0006s09010.1" /db_xref="TAIR:AT2G37730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HBV0" /translation="MSSTRETMVDPLKTWKFLVWPTITIKPIGSYFFLLKTILASFLV ASISLSLYFAFSSQPQWLPSPNCNNPVIISDHQKFTTKNISSQAYERTDLSHIQFGIG GSAKTWNERRRYCELWWRPNVTRGFVWLDEKPPNDEKLPPTSPPYKISQDTSRFKYTS WYGSRSAVRIARIVKESFELGLDNVRWFVMGDDDTVFFLENLVTVLNKYDHNQMYYIG GNSESVEQDVIHSYTMAYGGGGFAISYPLAAELVKVLDGCIDRYASFYGSDQKIQGCM SEIGIPVTKELGFHQVDIRGNPYGLLAAHPLAPLVSLHHLDYIQSIFPGRTQIYSIKK LLSAYEKDPSRALQHSFCYDLKRNWSVSVSWGYTVQLYPSLVTAKKLETAFLTFKSWR SWNDEPFTFNTRPVGQDPCERPVIYFLDRTERVTGDRTLTTYIRYVDGSETECDKPDY APTLAVQFFHVSSARLNPAIWRMAPRRQCCEVINGGDGEDNLIQVKIRGCKRFESVTP L" gene 1601567..1603959 /locus_tag="TCM_021878" /note="dbxref CacaoGD:Thecc1EG021878" mRNA 1601567..1603959 /locus_tag="TCM_021878" /product="Avr9/Cf-9 rapidly elicited protein 137, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034121001" /inference="similar to AA sequence:Phytozome:GSVIVT01034121001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1525t1" CDS 1601691..1603253 /locus_tag="TCM_021878" /codon_start=1 /product="Avr9/Cf-9 rapidly elicited protein 137, putative" /protein_id="EOY07447.1" /db_xref="Phytozome:GSVIVT01034121001" /db_xref="TAIR:AT3G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FQZ2" /translation="MIAASMAWLSAGVDKASSGSKKCSIFRQENSSSSSPTLEILAFE TAKTMSRLVALYRSLSDDEVCKLRTGTMKSPGVAYLNSTDESYLLGLACKEKLEDLNQ AAAIISRLAKKCIDQELNRFEIAYHNIKQGIIDVSKIDYNSRNVGKIIDKMEKCANAT SVLYASLIGLNELELSEKKMQKWKINACPKKSSEKTNIDYFNEKISFQRKQVRHFRQI SLWNQTFDKSVGLMARIVCVVYTRICTIFEPFVPSLPRTTRNRHFQTRLYVSNPKPLH MKVYPEANYCLLLNKDKYMMKQASKSGPIMKTPRIKPGTTRFHSGELSPKEKGLGFRI SAVTITDRVTTKINNEENNRRNQRLIQLPPPNTVGAAGLAVRYANVIIMAESYFYSAT TISDEAREQMFEMLPMSLKHTLRGKLKSHWCRDAEERDGQHGLAEGWKDALEDIIGWL APMAHDTLRWQQERNLEQQSLDAKPTVLLLQTLHFSDLEKTEAAIVEVLVGLSCIYRY ENRRERGANGGR" mobile_element complement(1603650..1603751) /note="source:scaffold_3_CACTA_0396 879 983" /mobile_element_type="transposon:TIR/CACTA" gene 1604133..1612136 /locus_tag="TCM_021879" /note="dbxref CacaoGD:Thecc1EG021879" mRNA join(1604133..1604396,1606173..1608955,1609067..1609409, 1611877..1612136) /locus_tag="TCM_021879" /product="EF-TU receptor, putative" /inference="alignment:exonerate- protein:2:Phytozome:Sb05g026010.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042545t1" /inference="similar to AA sequence:Phytozome:Glyma09g05550.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.31 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc12246t1" gene 1606276..1615618 /locus_tag="TCM_021880" /note="dbxref CacaoGD:Thecc1EG021880" mRNA join(1606276..1606543,1612716..1613035,1613152..1613257, 1613353..1613438,1613680..1614152,1614239..1614657) /locus_tag="TCM_021880" /product="Rubisco activase isoform 2" /inference="alignment:exonerate- protein:2:ricco:28345.m000114" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042729t1" /inference="similar to AA sequence:Phytozome:GSVIVT01034123001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00133t00003; inference alignment:Newbler:10:TSA:cgbaB_g00133t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1252t2" CDS join(1606312..1608955,1609067..1609401) /locus_tag="TCM_021879" /note="paralog of Thecc1EG042545t1" /codon_start=1 /product="EF-TU receptor, putative" /protein_id="EOY07448.1" /db_xref="Phytozome:Glyma09g05550.1" /db_xref="TAIR:AT5G20480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HCL8" /translation="MAAETTILILLSLIIQPLLGGSQGLPRFNNNTDQESLLAFKSEI SRDPLGVLGTWNLSTSFCDWTGVTCNVTKQRVTGINLENHGLVGIIAPHIGNLSFLNY LNLQNNSFLGNLPQEMGQLFRLRTLILGSNQIQGTIPSSLSLCTRLTLLDLSINRLQG TIPKELGSLSELQDVSLAQNFLTGPIPSSFVNLSSLTNLILMSNGLHGQIPEGLGHLP FLINLQVGLNSISGEIPPSLFNSSSLIALAMAGNRLTGTLPPDMFTTLTSLTTLYLGG NLLSGRIPPSLGNASNLVRVDLSNNSFSGQIPLLWNLPNIQILSLQINKLVNAGNMDF ITSLANSTQLQVFSVAENQLTGKLPSSIGNLSRQLSLLVMNNNFFEGSLPGELSNLIN LTLIAFERNSLSGSIPPSIGSLPNLQNIYLHQNKFSGEIPESLGNLTYLSEVHLSNNF LEGTIPATLGDCQRLQSLDLSVNLLNGTIPRDIFGIPSFGMILNLSFNSLSGFVPAEV GNLNMIQAIDMANNEISGDIPVTIGDCSSLLYLNMSRNSFQGTIPNSLAKLKGIEYID LSSNKLTGVIPTSLETLKFLQVLNLSRNQLSGEVPKAGVFRNSTGVSLSGNLKLCGGV PDLGLPKCDSPGKHSGDSKVKIILIALFASVAFIIISMLVLWSVRKKWSGVLEDNDDA NSPEGHPRYRHHDLKLATRNFSSEYLIGEGSFGSVYKGIFRDGSLAAIKVFKMGQHGA SKSFLAECKALRNIRHRNLVKIISVCSAGDFKALVLPFMPNGNLEQLLHPRSENCEVE KALDINLRLKIAQDVASALAYLHHDCETPVVHCDLKPSNVLLDGEMVAHVGDFGLARI LLKNSPKADLSSSLGLKGSIGYMAPEYGIGAGASTRGDVYSFGILILELFTRKRPTDN LFTGDMDFQKWVSMHLPDNLLDIVDHELLQNEWQPAHSDGIATVINFGLMCARKSPEE RPTMREVSAMIENVKAKLSE" CDS join(1606520..1606543,1612716..1613035,1613152..1613257, 1613353..1613438,1613680..1614152,1614239..1614525) /locus_tag="TCM_021880" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042729t1" /codon_start=1 /product="Rubisco activase isoform 2" /protein_id="EOY07450.1" /db_xref="Phytozome:GSVIVT01034123001" /db_xref="TAIR:AT2G39730.3" /db_xref="UniProtKB/TrEMBL:UniRef50_O98997" /translation="MSLSRELQWNLNGSKPAAASLPSSAFLGNTLKKVTSKISHRKVS PKNFKVVAEYDESKKTSKDRWKGLAYDESDDQQDITRGKGMVDTLFQAPMGTGTHHAI MSSYDYISQGLRMYNLDNTMDGFYIAPAFMDKVVVHITKNFLSLPNIKVPLILGIWGG KGQGKSFQCELVFAKMGINSIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCC LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIV TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFKTDRVPHEDSVKLVDTFPGQ SIDFFSALRARVYDDEVREWVSEVGVQNVGKRLVNSKEGPPTFEQPKMTLEKLLEYGN MLVQEQENVKRVQLADKYLKEAALGEANDDAIKNESFYG" mRNA join(1612212..1613035,1613152..1613257,1613353..1613438, 1613680..1614152,1614239..1614520,1614646..1614684, 1614972..1615618) /locus_tag="TCM_021880" /product="Ribulose bisphosphate carboxylase/oxygenase activase 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:28345.m000114" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042729t2" /inference="similar to AA sequence:Phytozome:GSVIVT01034123001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1252t2" CDS join(1612413..1613035,1613152..1613257,1613353..1613438, 1613680..1614152,1614239..1614520,1614646..1614684, 1614972..1615045) /locus_tag="TCM_021880" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042729t2" /codon_start=1 /product="Ribulose bisphosphate carboxylase/oxygenase activase 1 isoform 1" /protein_id="EOY07449.1" /db_xref="Phytozome:GSVIVT01034123001" /db_xref="TAIR:AT2G39730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P10896" /translation="MATVVSAVGAVNGVPVLCFFPPYFAFLSSHYRSISRLCRPFNCL FYSFYRLSNFWVLLQLGEQNGKRMNLQTVNSFLKDMKSVVLLQSCGAVVKKRASLLQW NLNGSKPAAASLPSSAFLGNTLKKVTSKISHRKVSPKNFKVVAEYDESKKTSKDRWKG LAYDESDDQQDITRGKGMVDTLFQAPMGTGTHHAIMSSYDYISQGLRMYNLDNTMDGF YIAPAFMDKVVVHITKNFLSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINSIMM SAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRMGGTTQYTVNN QMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW APTREDRIGVCSGIFKTDRVPHEDSVKLVDTFPGQSIDFFSALRARVYDDEVREWVSE VGVQNVGKRLVNSKEGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLKEAA LGEANDDAIKNESFYGKAARQVNLPVPEGCTDPSATNFDPTARSDDGSCVYS" gene 1617403..1620355 /locus_tag="TCM_021881" /note="dbxref CacaoGD:Thecc1EG021881" mRNA 1617403..1620355 /locus_tag="TCM_021881" /product="Concanavalin A-like lectin protein kinase family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma18g40310.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042728t1" /inference="similar to AA sequence:ricco:28345.m000115" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04565t00001" CDS 1617987..1620038 /locus_tag="TCM_021881" /note="dbxref ricco:28345.m000115; paralog of Thecc1EG042728t1" /codon_start=1 /product="Concanavalin A-like lectin protein kinase family protein" /protein_id="EOY07451.1" /db_xref="TAIR:AT3G55550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HMK3" /translation="MAYFLPLLSTLFFLLISSSSSQPTELYFPGFKDINPNNLTLTGI AQIEKNGILCVTNDTSRLIGHAFYSSPFRFKNSSNGQAFSFSTSFALAIVPEYPKLGG HGLAFTITASKDLKALPSQYLGILNATDMGNFSNHLVAVEFDTVQDFEFQDINDNHIG IDLNSLDSNASAPASYYTDGSTKQNLTLKSGKPIQAWIDYDSVEHVINVTIAPNSTRP RLPILSFHVDLSPYLQEFMYVGFSASTGLLASSHYILGWSFKINGQAQALDLSSLPLL PGPPKKDTALTVGVSVSSVIFVIIALSIAIYFIIKIKNADVIEDWELEIGPQRYPYQE LKQATNGFSDKTLLGHGGFGRVYKGTLPNAKTEVAVKRISHESKQGLREFLSEIASIG RLRHRNLVQLLGWCRRRGDLLLVYDFMANGSLDKFLFDEPQTILSWEQRFRIIKGVAS GLLYLHEGYEQIVVHRDVKASNVLLDDEMNGRLGDFGLARLYEHGSNPGTTRVVGTLG YLAPELPKTGKATTSSDVYAFGALLLEVACGRRPLEPKALPEELVLVDWVWEKFRQGM VLEMVDTRLNGQYDQGEMLMVLKLGLICSNDVPVARPSMRQVLRFLDGEAELPENLRP PGAFDGGKAFAEGFEAFVHSLASSSFDNMSSCSFIENGNGGTSFASLSTSPLSLLRET R" gene complement(1622406..1623096) /locus_tag="TCM_021882" /note="dbxref CacaoGD:Thecc1EG021882" mRNA complement(join(1622406..1622769,1622979..1623096)) /locus_tag="TCM_021882" /product="Subtilisin inhibitor 1, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s08880.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021885t1" /inference="similar to AA sequence:ricco:28345.m000117" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1101t3" CDS complement(join(1622540..1622769,1622979..1623054)) /locus_tag="TCM_021882" /note="dbxref ricco:28345.m000117; paralog of Thecc1EG021885t1" /codon_start=1 /product="Subtilisin inhibitor 1, putative" /protein_id="EOY07452.1" /translation="MAENQHSQPSERQPGESTDPTPVLLRTYGCLLGSNTPPKMEWPE LVGLTPEEAETKIREDMPRVHIQVVQANSFVTMDFNQGRVRLYLDSSGKVQRPPRIG" gene complement(1623909..1626877) /locus_tag="TCM_021883" /note="dbxref CacaoGD:Thecc1EG021883" mRNA complement(1623909..1626877) /locus_tag="TCM_021883" /product="Concanavalin A-like lectin protein kinase family protein" /inference="alignment:exonerate- protein:2:Phytozome:Sb07g003240.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021886t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s08940.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.36 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1103t1" CDS complement(1624456..1626465) /locus_tag="TCM_021883" /note="paralog of Thecc1EG021886t1" /codon_start=1 /product="Concanavalin A-like lectin protein kinase family protein" /protein_id="EOY07453.1" /db_xref="Phytozome:POPTR_0006s08940.1" /db_xref="TAIR:AT3G53810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M345" /translation="MCFRFTVLLALLISFAAACDVDFIYNGFRSSKLSLDGIAKFTSN GLLKLTNETWRQKGQAFYPNPVNFKNSTNGSVFSFATTFVFAIISEYPNLSGHGIAFV IAPTRGLPGTLPSQFLGLFNDSNNGNAANHVVAVELDTIQSNEFADINENHVGIDING LKSDKSFPAGYYEDGTRQFRNLTLISGQRMQVWVEYHGLEKRMDVTLAPINVPKPKTP LLSLSRDLSSILNNEMYVGFSSSTGSVLTSHYVLGWSFKINGQAQELTLSQLPKLPRL GRKKRSRFLTIGLPLILVSSVLAAVSGVAYFIRRKRKFAEVVEDWELEYGPHRFKYKD LYVATKGFKDKELVGAGGFGRVYRGVLPTSKLEIAVKRVSHESRQGMKEFVAEIVSIG RLRHRNLVQLLGYCRRKGELLLVYDYMPNGSLDKYLYDQPNVTLNWRQRFRVIKGVAS GLFYLHEEWDQVVIHRDVKASNVLLDGELNGRLGDFGLARLYDHGKDPQTTRIVGTLG YLAPEHTRTGKATPLTDVFAFGAFLLEVACGRRPIQAQSPTEDVILIDWVYSCWYKGD ILEAKDPKLGTDYVAEEVELVLKLGLLCSHSEPEARPTMRQCVQFLEGDIPLPEISSL TLSSGGLAFAHREGFDDFAMSYTSSIYKGFSQSSSVAESLLSGGR" gene complement(1628808..1629592) /locus_tag="TCM_021885" /note="dbxref CacaoGD:Thecc1EG021885" mRNA complement(join(1628808..1629216,1629336..1629592)) /locus_tag="TCM_021885" /product="Subtilisin inhibitor 1, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021882t1" /inference="similar to AA sequence:ricco:28345.m000117" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2084t2" CDS complement(join(1628987..1629216,1629336..1629501)) /locus_tag="TCM_021885" /note="dbxref ricco:28345.m000117; paralog of Thecc1EG021882t1" /codon_start=1 /product="Subtilisin inhibitor 1, putative" /protein_id="EOY07454.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T430" /translation="MAENQHSQPSEKQPGESTDSTPVLPSELFAARLSHINGFANLII QVIRQLVRFMFGTYGSLLGSNTPPKMEWPELVGLTPEEAETKMKEDMPRVHIQVVQAN SFVTMDFNQGRARLYLDPSGKVQRPTRIG" mobile_element complement(1630318..1630719) /note="source:CACAO_MITE80_scaffold_4 2 410" /mobile_element_type="transposon:TIR/MITE" gene complement(1631165..1634128) /locus_tag="TCM_021886" /note="dbxref CacaoGD:Thecc1EG021886" mRNA complement(1631165..1634128) /locus_tag="TCM_021886" /product="Receptor lectin kinase" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021883t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s08940.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1103t1" CDS complement(1631797..1633806) /locus_tag="TCM_021886" /note="paralog of Thecc1EG021883t1" /codon_start=1 /product="Receptor lectin kinase" /protein_id="EOY07455.1" /db_xref="Phytozome:POPTR_0006s08940.1" /db_xref="TAIR:AT2G37710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80939" /translation="MCFRFAVLLALLISFAAAGDVDLISNGFRSSNLSLDGIAEFTSN GLLKLTNETRQQKGHAFYPNPVNFKNSTNGSVFTFSTTFVFAIIPEYPNLSGHGIAFV IAPTRGLPGALPSQFLGLFNESNNGNATNHVVAVELDTIQSNEFADINDNHVGIDING LKSDKSFPAGYYEDGTRQFRNLTLISGQRMQVWVEYHGLEKRMDVTLAPINVPKPKTP LLSLSRDLSSILNNEMYVGFSSSTGSVLTSHYVLGWSFSINGQAQELTLSQLPKLPRL GPKKRSRFLTIGLPLILVSLVLAAVSGVAYFMRRKRKFAEVVEDWELEYGPHRFKYKD LYVATKGFKDKELLGAGGFGRVYRGVLPTSKLEIAVKRVSHESRQGMKEFVAEIVSIG RLRHRNLVQLLGYCRRKGELLLVYDYMPNGSLDKYLYDQPNVTLNWRQRFRVIKGVAS GLFYLHEEWDQVVIHRDVKASNVLLDGELNGRLGDFGLARLYDHGKDPQTTHIVGTLG YLAPEHTRTGKATPLNDVFAFGAFLLEVACGRRPIQAQSPAEDVILIDWVYSCWYKGD ILEAKDPKLGTEYVAEEVELVLKLGLLCSHSEPEARPTMRQCVQFLEGDIPLPEISSL TLSSSGLAFAHREGFDDFAMSYTSSIYKGFSQSSSVAESLLSGGR" mobile_element 1639868..1639926 /note="source:scaffold_1_CACTA_0016 1224 1282" /mobile_element_type="transposon:TIR/CACTA" gene complement(1641788..1644739) /locus_tag="TCM_021887" /note="dbxref CacaoGD:Thecc1EG021887" mRNA complement(1641788..1644739) /locus_tag="TCM_021887" /product="Concanavalin A-like lectin protein kinase family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s19600.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021891t1" /inference="similar to AA sequence:ricco:29008.m000037" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.29 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc3696t1" CDS complement(1642625..1644631) /locus_tag="TCM_021887" /note="dbxref ricco:29008.m000037; paralog of Thecc1EG021891t1" /codon_start=1 /product="Concanavalin A-like lectin protein kinase family protein, putative" /protein_id="EOY07456.1" /db_xref="TAIR:AT4G29050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SZX6" /translation="MFFKKLLLLFLWIKVATSSNQGFIFNGFSLQLVSGQEQSLELGG IAELRTDGLFRLTDSSTFQVGHVFYSVPFKFKSSPNANAFSFSTTFVFVIVPENSRGH GITFVLAPSKEFGQVAPGQHLGLFNFSTDGLSSNHIVAIEFDTFQNQEFADIDDNHVG VDINSLKSAKSVSAGYVYSKTGKYRPADLSCGDRMQVWVEYDGTKHQLNVTLSPVIRR SKPKVPLLSMDIDLSPIILEQMYIGFSSATGLQVASTYISGWSFQMDGVAKDLDLDKL PSVTRSRKKKSRKKQIIVAVAVPVVGVLLLAVVFSAIFFLSRKKDRFTEILEDWEVQF GPHRFPYRDLFAATGGFNEKELLGRGGCGQVYRGELPASKVQIAVKRIFDKSQQRMKE FLAEIGTIGRLRHPNLVRLLGYCRGKDELLLVYDYMPNGSLDKYLHNKPEVTLNWSQR FKIIKDVASAVAYLHEEWLEVIIHRDIKASNVLLDDDLNGKLGDFGLARCSKHAQETI HLAGTYGYIAPELAKTGRANTSTDVYAFGAFCLEVVCGRRPLMPRASAEEVHLVDWVF NCWNEGDILKTADPELNKDFAAEEIDLVLKLALLCSHTIAAYRPRMSQVISYLNGQAS LPEDLDKILHTQELLEQSRDYSLTWTKDSVATMAVTESFLFAGR" gene 1644834..1650021 /locus_tag="TCM_021888" /note="dbxref CacaoGD:Thecc1EG021888" mRNA join(1644834..1644918,1646791..1647251,1649929..1650021) /locus_tag="TCM_021888" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026354t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS 1646805..1647242 /locus_tag="TCM_021888" /note="paralog of Thecc1EG026354t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07457.1" /translation="MSFFTIIWSIWLYRNEMIFDGKMWDLLKVMDIVKLRVAWWVKFK WPGDNVVSDIATTPLLASAPTSKRKVKSMVSWECPLAVWLKFNTDEAAKGCPGHLGIG GVLRANKGVVKVTFSKKAGWGDANLAEILAVREAMILFFASSW" mobile_element 1647302..1649860 /note="source:INTACT42_F19_scaffold_5-int 1 2555" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(1650023..1654212) /locus_tag="TCM_021891" /note="dbxref CacaoGD:Thecc1EG021891" mRNA complement(join(1650023..1652995,1654053..1654212)) /locus_tag="TCM_021891" /product="Concanavalin A-like lectin protein kinase family protein, putative" /inference="alignment:exonerate- protein:2:ricco:29008.m000037" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021887t1" /inference="similar to AA sequence:ricco:29008.m000037" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.64 coverage" mobile_element 1650547..1650607 /note="source:scaffold_6_CACTA_0709 2571 2630" /mobile_element_type="transposon:TIR/CACTA" CDS complement(1650776..1652944) /locus_tag="TCM_021891" /note="dbxref ricco:29008.m000037; paralog of Thecc1EG021887t1" /codon_start=1 /product="Concanavalin A-like lectin protein kinase family protein, putative" /protein_id="EOY07458.1" /db_xref="TAIR:AT4G29050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04534" /translation="MVQGSLTCRKSGPICQRRIQPLPANFLVSQFSLYLLSLNLSIQT KSNQRVPIMCLKDFLVLFVLIKVAASSNEGFIFNGFSSGLVSGQNKSLELAGVAEVSD GLCRLTNTESFKIGHAFYSVPFRFKNSSNTNAFSFSTTFVFAMVPENFRGHGMAFVLA PSQEFISGQGVASGQHLGLFNRTNNGNPSNHIVAVELDTFLNQEFGDPNGNHVGIDIN SLSSVNLTSANDVPESGLLDPVDLVSGEGGQLWVEYDGAKHQLNVTLSRFNTSKPEPL LSVDIDLSPFILDQMYVGFSSATAQLTASSYVLGWSFQIDGKAEDLDLAKLPSVPSAS IERSGKKKTTLAVGLSIAGVLFVGVIVSVIFILKRKKDTFVELVEDWEFQFGPHRFAY KDLFIATRGFNEKELLGQGGFGQVFRGELPGSKVQIAVKRIFHKSQQGMKEFIAEIGT IGRLRHPNLARLLGYCRSKDELLLVYDFMPNGSLDKFLYNKPKATLNWNQRFSIIKDV ATALAYLHEGWAEVIIHRDIKASNVLLDGEFNGKLGDFGLARCSKLAQDPQTTHVAGT FGYMAPELAKTGKASTSTDVYAFGAFCLEVTCGRRPIKQRASAEEVHLVDWVFKCWKE GDILKTADSKLENDFKVGETDLVLKLGLLCSHNVAAHRPRMSQVILYLRGQASLPENL DLILHTSELVEESSDYSAPSTNDFTRASVTITESFLSRGR" mobile_element complement(1654065..1654252) /note="source:scaffold_5_CACTA_0580 11361 11551" /mobile_element_type="transposon:TIR/CACTA" gene complement(1654250..1656678) /locus_tag="TCM_021892" /note="dbxref CacaoGD:Thecc1EG021892" mRNA complement(1654250..1656678) /locus_tag="TCM_021892" /product="Concanavalin A-like lectin protein kinase family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021891t1" /inference="similar to AA sequence:ricco:29008.m000037" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.18 coverage" CDS complement(1654613..1656580) /locus_tag="TCM_021892" /note="dbxref ricco:29008.m000037; paralog of Thecc1EG021891t1" /codon_start=1 /product="Concanavalin A-like lectin protein kinase family protein, putative" /protein_id="EOY07459.1" /db_xref="TAIR:AT4G29050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04534" /translation="MYFKNFLVVFVLIQVAAASSSGFVFQKFDRGSLELSGVAEVRDD GLLRLTNAAPSQFGQAFYSVPFGFKNSSNGSVSSFSTTCVLAIAPDLGNGMALVLAPS KKFIMGQGLGLFNLSNNGSSSNHIVAVELRTFQNQEVDDIDDNHVGIAINSLTSAISG HAGYVSIGSSESRHVDLASGERIQLWVEYDGTKHQLNVTLSPIHLSKPKVPLLSMDID LSPIIVEQMYVGFTSATGQQVSSLYVLGWSFQIEGKAQDLDLDKLPSLPGLGKSRKKQ VILAVVLPLTGVLLVAVTISAMVFLAFRNKRAVVPDISEDWEVQFGSHRFPYEDLLVA TGGFDEKELLGQGGFGQVFRGELPGSKVQVAVKRISHQSHQGTKEFISEICTIGRLRH PNLVKVLGYSRVNNELLLVYEYMPNGSLDKFLHNKPEVTLDWDQRFRIIKDVASALAF LHDEWTEVIIHRDIKPSNVLLDGDLNGKLGDFGLAICSNIAQGPQTTHIAGTFGYMAP ELPKTGMPSTSTDVYAFGAFCLEVVCGRRPIKSQASADEVHLADWVFKCWKEGDLLKT IDSTLGKDIKVGEINLVMKLGLLCTHKVAAVRPRMPEIILYLKEQASLPESLDAILQE YAKEPGDYSAARANDSTAIMTVTESFLSRGR" gene 1657631..1660218 /locus_tag="TCM_021893" /note="dbxref CacaoGD:Thecc1EG021893" mRNA join(1657631..1657725,1657918..1657973,1658210..1658353, 1658728..1658730,1658874..1658947,1659097..1659151, 1659219..1659281,1659376..1659503,1659765..1660218) /locus_tag="TCM_021893" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034127001" /inference="similar to AA sequence:Phytozome:GSVIVT01034127001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:PASA:2:TSA:puevd3b021192t1a3; inference alignment:Newbler:10:TSA:cgbaP2_g11893t00001" mRNA join(1657631..1657725,1657918..1657973,1658210..1658353, 1658874..1658947,1659097..1659151,1659219..1659281, 1659462..1659503,1659765..1660218) /locus_tag="TCM_021893" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034127001" /inference="similar to AA sequence:Phytozome:GSVIVT01034127001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:PASA:2:TSA:puevd3b021192t1a2; inference alignment:Newbler:10:TSA:cgbaP2_g11893t00001" mRNA join(1657631..1657725,1657918..1657973,1658210..1658353, 1658874..1658947,1659097..1659151,1659219..1659281, 1659376..1659503,1659765..1660104) /locus_tag="TCM_021893" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034127001" /inference="similar to AA sequence:Phytozome:GSVIVT01034127001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g11893t00001; inference alignment:Newbler:10:TSA:cgbaP2_g11893t00001" CDS join(1657680..1657725,1657918..1657973,1658210..1658353, 1658728..1658730,1658874..1658947,1659097..1659151, 1659219..1659281,1659376..1659503,1659765..1659843) /locus_tag="TCM_021893" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY07461.1" /db_xref="Phytozome:GSVIVT01034127001" /db_xref="TAIR:AT2G37680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A8MQJ8" /translation="MPVRVAENSAPSQVSGTNSGNTSPPACTLLSVGQAFSGTQNVSS LQKEEAWRVNVRIQGCDLEHGYLCGTMEALNVPMADTPIVVTFWEGEIVDTKNYTFYT GKWEASSEDDKRHWTKFPSFSPLLNQVEVDGGKSLDLSNYPYIFMRWKEQYFVNVGTD CGLTIAGFYYVCFSCSDGSINGFYYDPNSSPFQKLELISTNEGRSGFSFSSYELQ" CDS join(1657680..1657725,1657918..1657973,1658210..1658353, 1658874..1658947,1659097..1659151,1659219..1659281, 1659376..1659503,1659765..1659843) /locus_tag="TCM_021893" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY07460.1" /db_xref="Phytozome:GSVIVT01034127001" /db_xref="TAIR:AT2G37680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A8MQJ8" /translation="MPVRVAENSAPSQVSGTNSGNTSPPACTLLSVGQAFSGTQNVSS LQKEEAWRVNVRIQGCDLEHGYLCGTMEALNVPMADTPVVTFWEGEIVDTKNYTFYTG KWEASSEDDKRHWTKFPSFSPLLNQVEVDGGKSLDLSNYPYIFMRWKEQYFVNVGTDC GLTIAGFYYVCFSCSDGSINGFYYDPNSSPFQKLELISTNEGRSGFSFSSYELQ" CDS join(1657680..1657725,1657918..1657973,1658210..1658353, 1658874..1658947,1659097..1659151,1659219..1659281, 1659462..1659497) /locus_tag="TCM_021893" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY07462.1" /db_xref="Phytozome:GSVIVT01034127001" /db_xref="TAIR:AT2G37680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A8MQJ8" /translation="MPVRVAENSAPSQVSGTNSGNTSPPACTLLSVGQAFSGTQNVSS LQKEEAWRVNVRIQGCDLEHGYLCGTMEALNVPMADTPVVTFWEGEIVDTKNYTFYTG KWEASSEDDKRHWTKFPSFSPLLNQVEVDGGKSLDLSNYPYIFMRWFYQWLLLRS" mobile_element complement(1660154..1660222) /note="source:INTACT135F_F90_scaffold_2-int 13800 13997" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 1660223..1661286 /note="source:scaffold_2_CACTA_0244 12400 13390" /mobile_element_type="transposon:TIR/CACTA" gene 1660274..1664282 /locus_tag="TCM_021894" /note="dbxref CacaoGD:Thecc1EG021894" mRNA join(1660274..1660305,1662251..1662649,1662760..1662846, 1662948..1663046,1663146..1663350,1663518..1663651, 1663746..1664282) /locus_tag="TCM_021894" /product="D7-type cyclin, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s08860.1" /inference="similar to AA sequence:ricco:29568.m000279" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.15 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1135t1" mobile_element complement(1661287..1661605) /note="source:INTACT135F_F90_scaffold_2-int 12866 13799" /mobile_element_type="retrotransposon:LTR/Copia" CDS join(1662287..1662649,1662760..1662846,1662948..1663046, 1663146..1663350,1663518..1663651,1663746..1663985) /locus_tag="TCM_021894" /note="dbxref ricco:29568.m000279" /codon_start=1 /product="D7-type cyclin, putative" /protein_id="EOY07463.1" /db_xref="TAIR:AT5G02110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A8Y924" /translation="MSESDHIPSGIVVIISRNINFCTLVYDFFPKRKRKAMENLLCDE VWLSSPGTPDHSHDEREHCMLKGYADSFYTTKEDSEQAFVVCLEKEFSYMPEPGYLDH LQSKNLVFARFRAVQWLIKTCTRLNLSVGTVFNSANYLDRFLSVSQCHGWEHWMVELL SVACLSIASKFNETSLASLDELQMEDLDHSFQSSTIQQMELKLLQALKWRLGSTTVYS YIELITSNIICLKCNLQKELLNQVTKTLLRAELDFRLLRYPPSVVAISALWCTLEKLF PLSYNVYLTTIMRLINQDHEDDIIKCRRIMKAWLVDPLHTLKASDEQSYYYPSSPVTV LSMERIDHHINDCRVDLSFFRIPGSNANPESSAAKRKREEE" gene 1664417..1665403 /locus_tag="TCM_021895" /note="dbxref CacaoGD:Thecc1EG021895" mRNA join(1664417..1664571,1664656..1664809,1664906..1665028, 1665224..1665403) /locus_tag="TCM_021895" /product="HLIP/One helix protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s08850.1" /inference="similar to AA sequence:ricco:29568.m000280" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc449t12" CDS join(1664507..1664571,1664656..1664809,1664906..1665028, 1665224..1665292) /locus_tag="TCM_021895" /note="dbxref ricco:29568.m000280" /codon_start=1 /product="HLIP/One helix protein" /protein_id="EOY07464.1" /db_xref="TAIR:AT5G02120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HBU0" /translation="MNCLLGTVCNKSPTTTATNSYILKTMATSSLISSSFLLTTKPLT IQRQNQLHDTTTFRNRAPCKVQAAKLPPGVTVPKVQPKFTAPFLGFTRTAEVWNSRAC MIGLIGIFLVELILNKGILQMIGVDVGKGLDIPL" gene complement(1665078..1669152) /locus_tag="TCM_021896" /note="dbxref CacaoGD:Thecc1EG021896" mRNA complement(join(1665078..1666061,1666315..1666492, 1667056..1667156,1667266..1667327,1667418..1667622, 1667702..1667746,1667873..1668023,1668116..1668162, 1668261..1668334,1668425..1668557,1668696..1669152)) /locus_tag="TCM_021896" /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0002s09200.1" /inference="similar to AA sequence:Phytozome:POPTR_0002s09200.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:PASA:2:TSA:puevd3b021195t1a2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc529t7" mRNA complement(join(1665223..1666061,1666315..1666356, 1666438..1666492,1667056..1667156,1667266..1667327, 1667418..1667622,1667702..1667746,1667873..1668023, 1668116..1668162,1668261..1668334,1668425..1668557, 1668696..1668901)) /locus_tag="TCM_021896" /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0002s09200.1" /inference="similar to AA sequence:Phytozome:POPTR_0002s09200.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc531t1; alternateUTRof:Thecc1EG021896t1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc529t7" mRNA complement(join(1665550..1666061,1666315..1666356, 1666438..1666492,1667056..1667156,1667266..1667327, 1667418..1667622,1667702..1667746,1667873..1668023, 1668116..1668162,1668261..1668334,1668425..1668557, 1668696..1669152)) /locus_tag="TCM_021896" /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0002s09200.1" /inference="similar to AA sequence:Phytozome:POPTR_0002s09200.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc529t7" CDS complement(join(1665883..1666061,1666315..1666356, 1666438..1666492,1667056..1667156,1667266..1667327, 1667418..1667622,1667702..1667746,1667873..1668023, 1668116..1668162,1668261..1668334,1668425..1668557, 1668696..1668888)) /locus_tag="TCM_021896" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 1" /protein_id="EOY07465.1" /db_xref="Phytozome:POPTR_0002s09200.1" /db_xref="TAIR:AT5G02130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZL9" /translation="MIQAAAKLSRSAIAVSGNSRLGHISRTSSRPLRFLHDGINGPSA NPVAVQMINYALSHARSQKSDESYAQGMLILEQCLSTQLSESDGQFAQNSIGTVLLAM STLLYERGSFEEAIEKLRRVQDLTQSSLGVRVAAAEALVGLYLQLGQDDTSSVLTDKC LELLDKDDLKRNSGSKEFVVARAKAVKGLVELVNGNLESATSFFQGLQDNEDCNGTVA LSYGEFLHTTQNFSLAKELYQKIIEGVLKKEDFSDTNSLAVCNMAPDEVLLAATFALG QLESHMGNFGAAEEILTKALTKTEEYFGSHHPKVGVVLTCIALMFRTKARQEHSSALL IQEGLYRRAIEFLKAPPLESKETKLDQRDISALARGGYAEVLCVQQNRKTEGEKMKTW ADAAWRNRRMSLADALDISKPSSKVPVIDARISRVL" CDS complement(join(1665883..1666061,1666315..1666356, 1666438..1666492,1667056..1667156,1667266..1667327, 1667418..1667622,1667702..1667746,1667873..1668023, 1668116..1668162,1668261..1668334,1668425..1668557, 1668696..1668888)) /locus_tag="TCM_021896" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 1" /protein_id="EOY07466.1" /db_xref="Phytozome:POPTR_0002s09200.1" /db_xref="TAIR:AT5G02130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZL9" /translation="MIQAAAKLSRSAIAVSGNSRLGHISRTSSRPLRFLHDGINGPSA NPVAVQMINYALSHARSQKSDESYAQGMLILEQCLSTQLSESDGQFAQNSIGTVLLAM STLLYERGSFEEAIEKLRRVQDLTQSSLGVRVAAAEALVGLYLQLGQDDTSSVLTDKC LELLDKDDLKRNSGSKEFVVARAKAVKGLVELVNGNLESATSFFQGLQDNEDCNGTVA LSYGEFLHTTQNFSLAKELYQKIIEGVLKKEDFSDTNSLAVCNMAPDEVLLAATFALG QLESHMGNFGAAEEILTKALTKTEEYFGSHHPKVGVVLTCIALMFRTKARQEHSSALL IQEGLYRRAIEFLKAPPLESKETKLDQRDISALARGGYAEVLCVQQNRKTEGEKMKTW ADAAWRNRRMSLADALDISKPSSKVPVIDARISRVL" CDS complement(join(1666406..1666492,1667056..1667156, 1667266..1667327,1667418..1667622,1667702..1667746, 1667873..1668023,1668116..1668162,1668261..1668334, 1668425..1668557,1668696..1668888)) /locus_tag="TCM_021896" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 3" /protein_id="EOY07467.1" /db_xref="Phytozome:POPTR_0002s09200.1" /db_xref="TAIR:AT5G02130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZL9" /translation="MIQAAAKLSRSAIAVSGNSRLGHISRTSSRPLRFLHDGINGPSA NPVAVQMINYALSHARSQKSDESYAQGMLILEQCLSTQLSESDGQFAQNSIGTVLLAM STLLYERGSFEEAIEKLRRVQDLTQSSLGVRVAAAEALVGLYLQLGQDDTSSVLTDKC LELLDKDDLKRNSGSKEFVVARAKAVKGLVELVNGNLESATSFFQGLQDNEDCNGTVA LSYGEFLHTTQNFSLAKELYQKIIEGVLKKEDFSDTNSLAVCNMAPDEVLLAATFALG QLESHMGNFGAAEEILTKALTKTEEYFGSHHPKVGVVLTCIALMFRTKARQEHSSALL IQEGLYRRAIEFLKAPPLESKGLEHWNISLA" gene 1670681..1671852 /locus_tag="TCM_021897" /note="dbxref CacaoGD:Thecc1EG021897" mRNA join(1670681..1670831,1670918..1671852) /locus_tag="TCM_021897" /product="Pathogenesis-related thaumatin superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s08840.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042726t1" /inference="similar to AA sequence:frave:gene18459" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g10815t00001" CDS join(1670768..1670831,1670918..1671591) /locus_tag="TCM_021897" /note="dbxref frave:gene18459; paralog of Thecc1EG042726t1" /codon_start=1 /product="Pathogenesis-related thaumatin superfamily protein" /protein_id="EOY07468.1" /db_xref="TAIR:AT5G02140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HTG2" /translation="MPTSSILFSLFLCLLAFSTIADGEQVILVNNCKESIWPGTLGGA GQVSPKDGGFHLGSGEEVVLDVPQKWSGRIWGRQGCNFDSNGKGSCETGDCSGMLHCQ GKGGTPPATVIEMTLGSSSSPLHFYDVSLVDGFNLPVSMKPVGGGIGCGVASCEVDLN VCCPSALEVKKGAKVVGCKSACLAMQSAKYCCTGEYANPNTCKPTLFAHLFKAICPKA YSYAFDDSSSLNKCRASRYVITFCPPK" gene 1672618..1674345 /locus_tag="TCM_021898" /note="dbxref CacaoGD:Thecc1EG021898" mRNA join(1672618..1672939,1673123..1673370,1673485..1673716, 1673927..1674345) /locus_tag="TCM_021898" /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein, putative" /inference="alignment:exonerate-protein:2:frave:gene18454" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042722t1" /inference="similar to AA sequence:Phytozome:GSVIVT01034131001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc5100t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1148t1" CDS join(1672637..1672939,1673123..1673370,1673485..1673716, 1673927..1674181) /locus_tag="TCM_021898" /note="paralog of Thecc1EG042722t1" /codon_start=1 /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein, putative" /protein_id="EOY07469.1" /db_xref="Phytozome:GSVIVT01034131001" /db_xref="TAIR:AT3G21420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HL84" /translation="MNSKETFSENEEAPTYVPSIPVPNVQELVRKDPLQVPQRYVRDL EDIPKDTDISHLSSLIPVIDLSLLFFFLKGFLSLLLMGNEEKLEKINLACQEWGFFQV VNHGVAKEELQKMKDAAAEFFELPMEEKNKYAMPSNDIHGYGHAYVVSEEQILDWSDV LILVVHPSHYRKLKFWPKSPKGFEEIIEEYPNAIRKVATELFQSLSLIMGMDKEALLG LHKLLVQACRVNYYPACSKPDQVLGVSPHSDTSTITILMQEDYMWSNGKYKSIEHRAT ANHKKAGISYASFLVPHDEVEIEPLDHMLNSQSPQMYKKVNYGDYLRSSMTVKMEGKA HTKMARIEALA" gene complement(1674593..1677332) /locus_tag="TCM_021899" /note="dbxref CacaoGD:Thecc1EG021899" mRNA complement(join(1674593..1675219,1675407..1675509, 1675641..1675862,1676321..1676371,1676468..1676610, 1676703..1677332)) /locus_tag="TCM_021899" /product="Fes1A" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400015495" /inference="similar to AA sequence:Phytozome:POPTR_0006s08830.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13201t2" CDS complement(join(1674691..1675219,1675407..1675509, 1675641..1675862,1676321..1676371,1676468..1676610, 1676703..1676788)) /locus_tag="TCM_021899" /codon_start=1 /product="Fes1A" /protein_id="EOY07470.1" /db_xref="Phytozome:POPTR_0006s08830.1" /db_xref="TAIR:AT3G09350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SR28" /translation="MAKDEPNWDGLLKWSIAHSDGTRPTRNLSEEDRRWFMEAMQSQS VDVIKRMKEITLVMQTPEHVLEAQGVTSADIEDMLDELQEHVESIDMANDLHSIGGLV PLLGYLKNSHANIRAKAAEVVSTIVQNNPRSQQLVMEANGLEPLLSNFTCDPDVTVRT KALGAISSLIRHNKPGIAAFRLANGYAALRDALGTENVRFQRKALNLIQYLLNENSSD CSVVSELGFPRIMLHLASSEDAEVREAALRGLLELARDKTGGDNGGLGEDNEKLKQLL EERIKGISVMSPEDLGAAREERQLVDSLWSTCYTEPSSLREKGLLALPDEDAPPPDVA SKHFEPPLRGWAANHAGDSKSGAEKQKTPLLLGPSPPTDGANI" gene 1678448..1680110 /locus_tag="TCM_021900" /note="dbxref CacaoGD:Thecc1EG021900" mRNA 1678448..1680110 /locus_tag="TCM_021900" /product="Zinc finger family protein, putative" /inference="alignment:exonerate-protein:2:frave:gene18448" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041796t1" /inference="similar to AA sequence:frave:gene18448" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05520t00001" CDS 1678533..1679642 /locus_tag="TCM_021900" /note="dbxref frave:gene18448; paralog of Thecc1EG041796t1" /codon_start=1 /product="Zinc finger family protein, putative" /protein_id="EOY07471.1" /db_xref="TAIR:AT2G39720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HL86" /translation="MESIRSPYWCYRCNRFIRIRVRSPQDSIHCPDCGGGFIEEIETP SRSPIHQRFPAAAMYSDTPSPALSPSPTATPRFRRARRNAGDRSPFNPVVVLRGPTSE TDGVVPERGNNNFELYYDDGSGSGLRPLPARMSEFLMGSGFDRLLDQLSQLEVNGVAR FEQPPASKAAIESMPVIKIVGSHVSTESHCAVCKEPFVLDSEAREMPCKHIYHSDCIL PWLSIRNSCPVCRHELPTESSGNNLGENEAVRDEEAVGLTIWRLPGGGFAVGRFTGGR RAAEREFPVVFTEMDGGFNNAGAPRRISWAPSGRRSQESRGLGRVFRSFVSFFGRFRS SSSRSGSDSRFTRRSRSSSVFDRSSRRDSDWDFED" gene 1682199..1682949 /locus_tag="TCM_021901" /note="dbxref CacaoGD:Thecc1EG021901" mRNA join(1682199..1682531,1682643..1682949) /locus_tag="TCM_021901" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene18447" /inference="similar to AA sequence:frave:gene18447" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g15822t00001" CDS join(1682248..1682531,1682643..1682781) /locus_tag="TCM_021901" /note="dbxref frave:gene18447" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07472.1" /db_xref="TAIR:AT5G02160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B8W9" /translation="MASVASLQTLYATSLKQSPVSGRHSLSSRHAVAPAPWRSTVLSR TKSRNNQKRSLTVVAAIGDVSADSTNYLIAGAAVVALVGTAFPILFSRKDTCPECDGA GFVRKSGVPLRANAARKDEAQIVCARCNGLGKLNQIDK" mobile_element complement(1685206..1685625) /note="source:scaffold_5_CACTA_0596 2011 2413" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1685256..1685638 /note="source:CACAO_M_S_E7818_F60_scaffold_2 6241 6616" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1685627..1685944) /note="source:scaffold_7_CACTA_0794 2278 2591" /mobile_element_type="transposon:TIR/CACTA" gene 1686038..1690205 /locus_tag="TCM_021902" /note="dbxref CacaoGD:Thecc1EG021902" mRNA join(1686038..1686793,1687000..1687268,1687800..1688014, 1688113..1688136,1688243..1688423,1688524..1688743, 1688837..1688972,1689103..1689271,1689369..1689412, 1689511..1689573,1689657..1690205) /locus_tag="TCM_021902" /product="Transmembrane amino acid transporter family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s10570.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043231t5" /inference="similar to AA sequence:Phytozome:POPTR_0016s10570.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.21 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1182t1" CDS join(1686603..1686793,1687000..1687268,1687800..1688014, 1688113..1688136,1688243..1688423,1688524..1688743, 1688837..1688972,1689103..1689271,1689369..1689412, 1689511..1689573,1689657..1689752) /locus_tag="TCM_021902" /note="paralog of Thecc1EG043231t5" /codon_start=1 /product="Transmembrane amino acid transporter family protein, putative" /protein_id="EOY07473.1" /db_xref="Phytozome:POPTR_0016s10570.1" /db_xref="TAIR:AT5G02180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IZW8" /translation="MKIDEDLGFDREDAFQTDDEENRAERVCVDDCGDDTESDYALAS RNPSSNCLEVNNTTWPQSYRESMDMLKGVTPPSINFLSGTTATGLIGSSSFRKHQSND DESSHKKPLISERSFDEEVPTSTLLASQQRIFANESTPSQRQCSFTQSLINGINVLCG IGLLTTPYAVKEGGWLSLSLLIIFGIIACYTGILLKRCLESSPGLQTYPDIGQAAFGV AGRLMISVILYAELYAACVEYVIMMSDNLSTIFPNASIDFAGIYLDSHQVFSIVGALT VLPTVWLRDLSLLSYLSVGGVGASILVVLCLLWVGAVDQVGFHGSGTALNLANLPISV GIYSFCYAGHSVLPNIYSSMKEPSLFPLVLVASFIFCWFACTGAAISGFLIFGDSAES QFTLNMPIKFTASKIAAWTVVIITVSKYALTLTPIALSVEELVPSMTQFRSYGVSIII RTALVISTLVVAMTVPFFAFVMALAGSLLAMLLCIIFPCACYLSILRASLTKLQKAVC IGIAVLGLVIACFGTYSAILRIAGQLD" gene 1691938..1693703 /locus_tag="TCM_021903" /note="dbxref CacaoGD:Thecc1EG021903" mRNA 1691938..1693703 /locus_tag="TCM_021903" /product="Eukaryotic aspartyl protease family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_2222s00200.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042714t1" /inference="similar to AA sequence:Phytozome:POPTR_2222s00200.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1188t1" CDS 1692190..1693533 /locus_tag="TCM_021903" /note="paralog of Thecc1EG042714t1" /codon_start=1 /product="Eukaryotic aspartyl protease family protein" /protein_id="EOY07474.1" /db_xref="Phytozome:POPTR_2222s00200.1" /db_xref="TAIR:AT5G02190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZL3" /translation="MKSFVIFKSNSNPFLKILSLSSFYLQVFLFLLIYVHFSFSCPPK TLIFPLKTQILRSPSKLQFHHNVSLIVSLTVGTPPQNVSMVLDTGSELSWLHCNQTTQ NNQPDPTKFNPIQSSSYKPIPCSSPTCINQTQDFPIPASCDSDNLCHATLSYADASSS EGNLASDIFHLGSSDNISGLVFGCMDSIFSSNSAEDSKTTGLMGMNRGSLSLVSQMGF PKFSYCISGSDFSGLLLLGDSNVTWLMPLNYTPLIQISEPLPYFDRVAYTVQLEGIKV SGKLLPIPKSVLVPDHTGAGQTMVDSGTQFTFLLGPVYNVLRTEFLNQTGGVLRVLED PNFVFQGAMDLCYRVPLGQNNLPNLPSVSLVFTGAEMVVSGDRVLYQVPGEVRANDSV WCFSFGNSDLLGVEAYVIGHHHQQNVWMEFDLEKSRIGLAQVRCDLARQRFGVGN" mobile_element complement(1694130..1694257) /note="source:CACAO_Mariner_E220_scaffold_9 15124 15246" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 1695214..1695623 /note="source:CACAO_hAT_E1792_scaffold_4 35 410" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(1695623..1695808) /note="source:scaffold_5_CACTA_0607 7129 7312" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1695813..1696180 /note="source:CACAO_on_E310_scaffold_10 131 515" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(1696162..1696459) /note="source:CACAO_on_E6_scaffold_1 2516 2812" /mobile_element_type="transposon:TIR/hAT" mobile_element 1696553..1696703 /note="source:CACAO_on_E26_scaffold_4 3053 3204" /mobile_element_type="transposon:TIR/hAT" gene 1698219..1701317 /locus_tag="TCM_046798" /note="dbxref CacaoGD:Thecc1EG046798" mRNA join(1698219..1698438,1698553..1698704,1698805..1699049, 1699137..1699265,1699377..1700342,1700711..1701317) /locus_tag="TCM_046798" /product="Laccase 17" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g46820.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046799t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s08780.1" /note="quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02976t00002" CDS join(1698310..1698438,1698553..1698704,1698805..1699049, 1699137..1699265,1699377..1700342,1700711..1700841) /locus_tag="TCM_046798" /note="paralog of Thecc1EG046799t1" /codon_start=1 /product="Laccase 17" /protein_id="EOY07475.1" /db_xref="Phytozome:POPTR_0006s08780.1" /db_xref="TAIR:AT5G60020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HL88" /translation="MGSVLLTSSAFIRLLLLALCAVSLLPDLALAKHAGITRHYKFDI RMQNVTRLCQTKSIVTVNGQFPGPRIIAREGDRLLIKVVNHVQYNVTLHWHGIRQLRT GWADGPAYITQCPIQTGQSYVYNFTITGQRGTLFWHAHISWLRATLYGPIVILPKRHA SYPFPQPFKEVPIIFGEWWKADTETIINQAMATGGAPNISDAFTINGLPGPSYNCSAK ETFKLKVKPGKTYLLRLINAALNDELFFRIANHTVTVVEADAVYVKPFKTDVLLITPG QTTNVLLKAKSKTPGANFALSARPYATGPATFDNTTTIGILEYEISASASNSNNKKLP LLKAKLPQFNDSTYAMKFNQKIRSLATAKFPAKVPKNVDRRFFFTVGLGILPCSQNQT CQGPNNTRPAAAVNNVSFVQPNIALLQAYFFNRSKGVYTTNFPANPPVKFNYTGTPPK NIMLDSGTKVVVLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVLGQGVGNFDPKKD PAKFNLRDPAERNTVGVPSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKMAWVVNDG NGRKQKLLPPPADLPKC" gene 1703584..1706552 /locus_tag="TCM_046799" /note="dbxref CacaoGD:Thecc1EG046799" mRNA join(1703584..1703801,1703918..1704069,1704166..1704410, 1704498..1704626,1704739..1705704,1706136..1706552) /locus_tag="TCM_046799" /product="Laccase 17" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s08780.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046798t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s08780.1" /note="quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1200t1" CDS join(1703673..1703801,1703918..1704069,1704166..1704410, 1704498..1704626,1704739..1705704,1706136..1706266) /locus_tag="TCM_046799" /note="paralog of Thecc1EG046798t1" /codon_start=1 /product="Laccase 17" /protein_id="EOY07476.1" /db_xref="Phytozome:POPTR_0006s08780.1" /db_xref="TAIR:AT5G60020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HL88" /translation="MSSVLLTSSAFIRVFLLALCAVSLLPDLAVAKHAGITRHYNFDI RMQNVTRLCQTKSIVTVNGQFPGPRIIAREGDRLLIKVVNHVQYNVTLHWHGIRQLRT GWADGPAYITQCPIQTGQSYVYNFTITGQRGTLFWHAHISWLRATLYGPIVILPKRHA SYPFPQPFKEVPIIFGEWWKADTETIINQAMATGGAPNISDAFTINGLPGPSYNCSAK ETFKLKVKPGKTYLLRLINAALNDELFFRIANHTVTVVEADAVYVKPFKTDIVLITPG QTTNVLLKAKSKTSGANFALSARPYATGPATFDNTTTIGILEYEKSASASNSNNKKLP LLKAKLPEFNDSTYAMKFNQKIRSLATAKFPAKVPKNVDRRFFFTVGLGILPCSQKQT CQGPNNTRPAAAVNNVSFVQPNIALLQAHFFNRSKGVYTTNFPANPPFKFNYIGTPPK NIMLDSGTKVMVLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVLGQGVGNFDSKKD PAKFNLVDPAERNTVGVPSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKMAWVVNDG KGRKQKLLPPPADIPKC" gene 1707523..1714690 /locus_tag="TCM_021905" /note="dbxref CacaoGD:Thecc1EG021905" mRNA join(1707523..1707725,1711287..1711458,1712013..1712164, 1712262..1712506,1712594..1712722,1712834..1713799, 1714089..1714690) /locus_tag="TCM_021905" /product="Laccase 17" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s08780.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046798t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s08780.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.46 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1683t8_C2" CDS join(1711330..1711458,1712013..1712164,1712262..1712506, 1712594..1712722,1712834..1713799,1714089..1714219) /locus_tag="TCM_021905" /note="paralog of Thecc1EG046798t1" /codon_start=1 /product="Laccase 17" /protein_id="EOY07477.1" /db_xref="Phytozome:POPTR_0006s08780.1" /db_xref="TAIR:AT5G60020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HL88" /translation="MGSVLLTSSAFFRALFLALCAVWLLPDLALAKHAGITRHYKFNI RMQNVTRLCQTKSIVTVNGQFPGPRIIAREGDRLLIKVVNHVQYNVTLHWHGIRQLRT GWADGPAYITQCPIQTGQSYVYNFTITGQRGTLFWHAHISWLRATLYGPIVILPKRHA SFPFPQPFKEVPIIFGEWWKADTETIINQAMATGGAPNISDAFTINGLPGPSYNCSAK ETFKLKVKPGKTYLLRLINAALNDELFFRIANHTVTVVEADAVYVKPFKTDIVLITPG QTTNVLLKAKSKAPGANFALSARPYATGIATFDNTTTIGILEYEKSASASNSKNKKLP LLKAKLPQFNDSTYAMKFNQKLRSLATTKFPVKVSKNVDRRFFFTVGLGILPCSQNQT CQGPNNTRPAAAVNNVSFVQPNIALLQAHFFNRSKGVYTTNFPANPPFKFNYTGTPPR NIMLDSGTKVVVLPFNTSVELVMQDTSILGAESHPLHLHGFNFFVLGQGVGNFDPKKD PAKFNLVDPAERNTVGVPSGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKMAWVVNDG KGRKQKLLPPPADLPKC" mobile_element 1714744..1714939 /note="source:CACAO_PIF_E119_scaffold_3 4461 4662" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 1715065..1715464 /note="source:CACAO_on_E576_scaffold_5 2 402" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 1715600..1719358 /locus_tag="TCM_021906" /note="dbxref CacaoGD:Thecc1EG021906" mRNA join(1715600..1716075,1717330..1717422,1717847..1717924, 1718001..1718099,1718215..1718310,1718683..1719358) /locus_tag="TCM_021906" /product="DHHC-type zinc finger family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s08770.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043234t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s08770.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:PASA:2:TSA:puevd3b021205t1a2; inference alignment:Newbler:10:TSA:cgbaB_g02411t00001" mRNA join(1715662..1716075,1717330..1717422,1717504..1717605, 1717847..1717924,1718001..1718099,1718215..1718458) /locus_tag="TCM_021906" /product="DHHC-type zinc finger family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s08770.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043234t1" /inference="similar to AA sequence:ricco:29568.m000291" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc916t2; inference alignment:Newbler:10:TSA:cgbaB_g02411t00001" mRNA join(1715662..1716075,1717330..1717422,1717847..1717924, 1718001..1718099,1718215..1718458) /locus_tag="TCM_021906" /product="DHHC-type zinc finger family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s08770.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043234t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s08770.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc916t1; inference alignment:Newbler:10:TSA:cgbaB_g02411t00001" mRNA join(1715693..1716075,1717330..1717422,1717504..1717605, 1717847..1717924,1718001..1718099,1718215..1718310, 1718683..1719100) /locus_tag="TCM_021906" /product="DHHC-type zinc finger family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s08770.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043234t1" /inference="similar to AA sequence:ricco:29568.m000291" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02411t00001; inference alignment:Newbler:10:TSA:cgbaB_g02411t00001" mRNA join(1715693..1716075,1717847..1717924,1718001..1718099, 1718215..1718310,1718683..1719100) /locus_tag="TCM_021906" /product="DHHC-type zinc finger family protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s08770.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s08770.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02411t00002; inference alignment:Newbler:10:TSA:cgbaB_g02411t00001" CDS join(1715803..1716075,1717330..1717422,1717504..1717605, 1717847..1717924,1718001..1718099,1718215..1718310, 1718683..1718796) /locus_tag="TCM_021906" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29568.m000291; paralog of Thecc1EG043234t1" /codon_start=1 /product="DHHC-type zinc finger family protein isoform 1" /protein_id="EOY07478.1" /db_xref="TAIR:AT3G09320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93VV0" /translation="MKRGFSFSLPVTVVISAIAFIYFCTVFIFIDRWFGLMTSPGVMN AVVFTGVAVTCVLNYGFAISTDPGRVPSSFMPDIEDSEVPIHEIKRKGGDLRYCQKCS HFKPPRAHHCRVCKRCVLRMDHHCIWINNCVGHANYKVFFVFVVYAVIACIYSLVLLV GSLTNDSQNDEQQSADSFRTAYVICGLLLVPLSVALSVLLGWHIYLILQNKTTIEYHE GVRAMWLAEKGGNVYKHPYDLGSYENLTTVLGPSIFCWICPTSRHIGNGLRFRTAYDG KSAASISE" CDS join(1715803..1716075,1717330..1717422,1717847..1717924, 1718001..1718099,1718215..1718310,1718683..1718796) /locus_tag="TCM_021906" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG043234t1" /codon_start=1 /product="DHHC-type zinc finger family protein isoform 3" /protein_id="EOY07480.1" /db_xref="Phytozome:POPTR_0006s08770.1" /db_xref="TAIR:AT3G09320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93VV0" /translation="MKRGFSFSLPVTVVISAIAFIYFCTVFIFIDRWFGLMTSPGVMN AVVFTGVAVTCVLNYGFAISTDPGRVPSSFMPDIEDSEVPIHEIKRKGGDLRYCQKCS HFKPPRAHHCRVCKRCVLRMVLLVGSLTNDSQNDEQQSADSFRTAYVICGLLLVPLSV ALSVLLGWHIYLILQNKTTIEYHEGVRAMWLAEKGGNVYKHPYDLGSYENLTTVLGPS IFCWICPTSRHIGNGLRFRTAYDGKSAASISE" CDS join(1715803..1716075,1717847..1717924,1718001..1718099, 1718215..1718310,1718683..1718796) /locus_tag="TCM_021906" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="DHHC-type zinc finger family protein isoform 5" /protein_id="EOY07482.1" /db_xref="Phytozome:POPTR_0006s08770.1" /db_xref="TAIR:AT3G09320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93VV0" /translation="MKRGFSFSLPVTVVISAIAFIYFCTVFIFIDRWFGLMTSPGVMN AVVFTGVAVTCVLNYGFAISTDPGRVPSSFMPDIEDSEVPIHEIKRKVLLVGSLTNDS QNDEQQSADSFRTAYVICGLLLVPLSVALSVLLGWHIYLILQNKTTIEYHEGVRAMWL AEKGGNVYKHPYDLGSYENLTTVLGPSIFCWICPTSRHIGNGLRFRTAYDGKSAASIS E" CDS join(1715803..1716075,1717330..1717422,1717504..1717605, 1717847..1717924,1718001..1718099,1718215..1718355) /locus_tag="TCM_021906" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29568.m000291; paralog of Thecc1EG043234t1" /codon_start=1 /product="DHHC-type zinc finger family protein isoform 2" /protein_id="EOY07479.1" /db_xref="TAIR:AT3G09320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93VV0" /translation="MKRGFSFSLPVTVVISAIAFIYFCTVFIFIDRWFGLMTSPGVMN AVVFTGVAVTCVLNYGFAISTDPGRVPSSFMPDIEDSEVPIHEIKRKGGDLRYCQKCS HFKPPRAHHCRVCKRCVLRMDHHCIWINNCVGHANYKVFFVFVVYAVIACIYSLVLLV GSLTNDSQNDEQQSADSFRTAYVICGLLLVPLSVALSVLLGWHIYLILQNKTTIEYHE GVRAMWLAEKGGNVYKHPYDLGSYENLTTVITCNETAPLLFLR" CDS join(1715803..1716075,1717330..1717422,1717847..1717924, 1718001..1718099,1718215..1718355) /locus_tag="TCM_021906" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG043234t1" /codon_start=1 /product="DHHC-type zinc finger family protein isoform 4" /protein_id="EOY07481.1" /db_xref="Phytozome:POPTR_0006s08770.1" /db_xref="TAIR:AT3G09320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93VV0" /translation="MKRGFSFSLPVTVVISAIAFIYFCTVFIFIDRWFGLMTSPGVMN AVVFTGVAVTCVLNYGFAISTDPGRVPSSFMPDIEDSEVPIHEIKRKGGDLRYCQKCS HFKPPRAHHCRVCKRCVLRMVLLVGSLTNDSQNDEQQSADSFRTAYVICGLLLVPLSV ALSVLLGWHIYLILQNKTTIEYHEGVRAMWLAEKGGNVYKHPYDLGSYENLTTVITCN ETAPLLFLR" gene 1720075..1722679 /locus_tag="TCM_021907" /note="dbxref CacaoGD:Thecc1EG021907" mRNA join(1720075..1720391,1720665..1720726,1721534..1722180, 1722388..1722679) /locus_tag="TCM_021907" /product="Far-red elongated hypocotyl 1, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29568.m000292" /inference="similar to AA sequence:ricco:29568.m000292" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1242t2" CDS join(1720233..1720391,1720665..1720726,1721534..1722180, 1722388..1722461) /locus_tag="TCM_021907" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29568.m000292" /codon_start=1 /product="Far-red elongated hypocotyl 1, putative isoform 1" /protein_id="EOY07483.1" /translation="MRSEKKADLFSDIHEEGKRVVRSLVSSSSSESFRLSAGVCQEME VDNQTNPSQFDTLLVINSATAIYQLGFSLFLLNGSVNIVDFNKKRKLEAEQLGLPISK HQCWNRSLPSKPPTFSSIQEVEGFSPCTFKGKGGAAYDVSETGSAKDSNSFAEDSDCA MSVHDEAKFGTEDTKYLLYGRASSSSSDWGSNSQGSLYSSDSTTVASRSVDKEVLSSP GGQPEPADVELADNLEESLVEYGSHIDYIYSGYGNYPIEEYQDKEIEEILNTNGANPN VYVLSSGRWSANQEAPQTARKPTIDQEFEQYFSTLML" mRNA join(1720309..1720399,1721534..1722180,1722388..1722640) /locus_tag="TCM_021907" /product="Far-red elongated hypocotyl 1, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:29568.m000292" /inference="similar to AA sequence:ricco:29568.m000292" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1242t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1242t2; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc493t5" CDS join(1720359..1720399,1721534..1722180,1722388..1722461) /locus_tag="TCM_021907" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29568.m000292" /codon_start=1 /product="Far-red elongated hypocotyl 1, putative isoform 2" /protein_id="EOY07484.1" /translation="MEVDNQTNPSQVKSLLNGSVNIVDFNKKRKLEAEQLGLPISKHQ CWNRSLPSKPPTFSSIQEVEGFSPCTFKGKGGAAYDVSETGSAKDSNSFAEDSDCAMS VHDEAKFGTEDTKYLLYGRASSSSSDWGSNSQGSLYSSDSTTVASRSVDKEVLSSPGG QPEPADVELADNLEESLVEYGSHIDYIYSGYGNYPIEEYQDKEIEEILNTNGANPNVY VLSSGRWSANQEAPQTARKPTIDQEFEQYFSTLML" gene complement(1722151..1726622) /locus_tag="TCM_021909" /note="dbxref CacaoGD:Thecc1EG021909" mRNA complement(join(1722151..1722181,1723656..1725349, 1725629..1725757,1725849..>1726000)) /locus_tag="TCM_021909" /product="Laccase 2 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma18g40050.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041799t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s08740.1" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is weak, protein is partial5; similar to RNA sequence, EST 0.62 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc2043t2; inference alignment:Newbler:10:TSA:cgbaL_g01322t00001" mRNA complement(join(1722155..1722181,1723656..1724249, 1724488..1725349,1725629..1725757,1725849..1726093, 1726200..1726351,1726436..1726622)) /locus_tag="TCM_021909" /product="Laccase 17 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma18g40050.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032988t1" /inference="similar to AA sequence:ricco:29568.m000293" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc406t14; inference alignment:Newbler:10:TSA:cgbaL_g01322t00001" mRNA complement(join(1722155..1722181,1723656..1724306, 1724390..1725349,1725629..1725757,1725849..1726093, 1726200..1726351,1726436..1726622)) /locus_tag="TCM_021909" /product="Laccase 17 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma18g40050.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032988t1" /inference="similar to AA sequence:ricco:29568.m000293" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc4122t1; alternateUTRof:Thecc1EG021909t1; inference alignment:Newbler:10:TSA:cgbaL_g01322t00001" misc_feature join(1722155..1722180,1723655..1724414) /locus_tag="TCM_021907" /note="Gene fragment of Thecc1EG021907t1; dbxref gnl|CacaoGD|Thecc1EG021907t1; quality class is mediumpartial-partof is thecc1eg021907t1, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.29 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc4122t6; dbxref CacaoGD:Thecc1EG021908t1" mRNA complement(join(1723339..1724306,1724390..1725349, 1725629..1725757,1725849..1726093,1726200..1726351, 1726436..1726622)) /locus_tag="TCM_021909" /product="Laccase 17 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma18g40050.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032988t1" /inference="similar to AA sequence:ricco:29568.m000293" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01322t00001" CDS complement(join(1724176..1724306,1724390..1725349, 1725629..1725757,1725849..1726093,1726200..1726351, 1726436..1726552)) /locus_tag="TCM_021909" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29568.m000293; paralog of Thecc1EG032988t1" /codon_start=1 /product="Laccase 17 isoform 1" /protein_id="EOY07485.1" /db_xref="TAIR:AT5G60020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HL88" /translation="MATSHPIPSFPSMAMLFSFFVLLLLLENVAGETRHYTFNIDYHN VTRLCHTRTILTVNRQFPGPRLVAREGDRVIVKVVNHISNNVSIHWHGIRQLTTGWAD GPSYVTQCPIQTNQSYIYNFTITGQRGTLLWHAHISWLRATIYGPIIILPKRNESYPF VKPHKEVTILFGEWFNTDPEAIISQALQTGAAPNVSDAYTINSLPGPLYNCSSKDTYK LKVKPGKTYLLRLINAALNDELFFSIANHTVTVVEGDAIYTKPFETDKLLITPGQTTN VLLKTKPEFPNASFLMAARPYFTGQGTIDNSTTVGILEYEHPKHHKSSKNLTLLQPTL PPINATAFVANFTGKFRSLANAKFPANVPKTVDKKFFFTVGLGTSPCPQNTTCQGPNN SSKFAASVNNMSFALPSVAILQAYYFGQNGVYTTDFPTQPLIPFNYTGTPPNNTNVMN GTRTVVLPFNTSVELVMQDTSILGAESHPLHLHGYNFFVVGQGFGNFDPNKDPAKFNL VDPMERNTAGVPAGGWLAIRFFADNPGVWFMHCHLDVHTSWGLKMAWIVLDGPQPNQK LQPPPSDLPQC" CDS complement(join(1724176..1724306,1724390..1725349, 1725629..1725757,1725849..1726093,1726200..1726351, 1726436..1726552)) /locus_tag="TCM_021909" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29568.m000293; paralog of Thecc1EG032988t1" /codon_start=1 /product="Laccase 17 isoform 1" /protein_id="EOY07486.1" /db_xref="TAIR:AT5G60020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HL88" /translation="MATSHPIPSFPSMAMLFSFFVLLLLLENVAGETRHYTFNIDYHN VTRLCHTRTILTVNRQFPGPRLVAREGDRVIVKVVNHISNNVSIHWHGIRQLTTGWAD GPSYVTQCPIQTNQSYIYNFTITGQRGTLLWHAHISWLRATIYGPIIILPKRNESYPF VKPHKEVTILFGEWFNTDPEAIISQALQTGAAPNVSDAYTINSLPGPLYNCSSKDTYK LKVKPGKTYLLRLINAALNDELFFSIANHTVTVVEGDAIYTKPFETDKLLITPGQTTN VLLKTKPEFPNASFLMAARPYFTGQGTIDNSTTVGILEYEHPKHHKSSKNLTLLQPTL PPINATAFVANFTGKFRSLANAKFPANVPKTVDKKFFFTVGLGTSPCPQNTTCQGPNN SSKFAASVNNMSFALPSVAILQAYYFGQNGVYTTDFPTQPLIPFNYTGTPPNNTNVMN GTRTVVLPFNTSVELVMQDTSILGAESHPLHLHGYNFFVVGQGFGNFDPNKDPAKFNL VDPMERNTAGVPAGGWLAIRFFADNPGVWFMHCHLDVHTSWGLKMAWIVLDGPQPNQK LQPPPSDLPQC" CDS complement(join(1724192..1724249,1724488..1725349, 1725629..1725757,1725849..1726093,1726200..1726351, 1726436..1726552)) /locus_tag="TCM_021909" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29568.m000293; paralog of Thecc1EG032988t1" /codon_start=1 /product="Laccase 17 isoform 3" /protein_id="EOY07487.1" /db_xref="TAIR:AT5G60020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HL88" /translation="MATSHPIPSFPSMAMLFSFFVLLLLLENVAGETRHYTFNIDYHN VTRLCHTRTILTVNRQFPGPRLVAREGDRVIVKVVNHISNNVSIHWHGIRQLTTGWAD GPSYVTQCPIQTNQSYIYNFTITGQRGTLLWHAHISWLRATIYGPIIILPKRNESYPF VKPHKEVTILFGEWFNTDPEAIISQALQTGAAPNVSDAYTINSLPGPLYNCSSKDTYK LKVKPGKTYLLRLINAALNDELFFSIANHTVTVVEGDAIYTKPFETDKLLITPGQTTN VLLKTKPEFPNASFLMAARPYFTGQGTIDNSTTVGILEYEHPKHHKSSKNLTLLQPTL PPINATAFVANFTGKFRSLANAKFPANVPKTVDKKFFFTVGLGTSPCPQNTTCQGPNN SSKFAASVNNMSFALPSVAILQAYYFGQNGVYTTDFPTQPLIPFNYTGTPPNNTNVMN GTRTVVLPFNTSVELVMQDTSILGAESHPLHLHGYNFFVVGQGFGNFDPNKDMDSLGW AATKSEVAATTV" CDS complement(join(1724340..1725349,1725629..1725757, 1725849..>1725999)) /locus_tag="TCM_021909" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG041799t1" /codon_start=1 /product="Laccase 2 isoform 4" /protein_id="EOY07488.1" /db_xref="Phytozome:POPTR_0006s08740.1" /db_xref="TAIR:AT2G29130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HL88" /translation="FTITGQRGTLLWHAHISWLRATIYGPIIILPKRNESYPFVKPHK EVTILFGEWFNTDPEAIISQALQTGAAPNVSDAYTINSLPGPLYNCSSKDTYKLKVKP GKTYLLRLINAALNDELFFSIANHTVTVVEGDAIYTKPFETDKLLITPGQTTNVLLKT KPEFPNASFLMAARPYFTGQGTIDNSTTVGILEYEHPKHHKSSKNLTLLQPTLPPINA TAFVANFTGKFRSLANAKFPANVPKTVDKKFFFTVGLGTSPCPQNTTCQGPNNSSKFA ASVNNMSFALPSVAILQAYYFGQNGVYTTDFPTQPLIPFNYTGTPPNNTNVMNGTRTV VLPFNTSVELVMQDTSILGAESHPLHLHGYNFFVVGQGFGNFDPNKDPAKFNLVDPME RNTAGVPAGGWLAIRFFADNPGTNLFPLFPRQISQKR" gene complement(1729460..1730192) /locus_tag="TCM_021910" /note="dbxref CacaoGD:Thecc1EG021910" mRNA complement(1729460..1730192) /locus_tag="TCM_021910" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:TAIR:AT5G02220.1" /note="quality class is medium-utrpoor, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g15075t00001" CDS complement(1729765..1729962) /locus_tag="TCM_021910" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07489.1" /translation="MESSSSIEEGCTTPKHRIPVAFHCPPPPRKKSPGGAKREPPKNG YFQPPDLDSLFTLQPRREACA" gene 1731425..1735591 /locus_tag="TCM_021911" /note="dbxref CacaoGD:Thecc1EG021911" mRNA join(1731425..1732167,1733639..1733920,1734018..1734164, 1734929..1735591) /locus_tag="TCM_021911" /product="WRKY DNA-binding protein 49, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034148001" /inference="similar to AA sequence:Phytozome:GSVIVT01034148001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2068t1" CDS join(1731899..1732167,1733639..1733920,1734018..1734164, 1734929..1735430) /locus_tag="TCM_021911" /codon_start=1 /product="WRKY DNA-binding protein 49, putative" /protein_id="EOY07490.1" /db_xref="Phytozome:GSVIVT01034148001" /db_xref="TAIR:AT5G43290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SYC1" /translation="MNLRPPQSLAASPLWLSAPAREQTQAAKPKPTLTVKTIFVFNVC PLGFLGFTKSKPNSYKTSLTLKQTTRKPSLVEDKLCCWFGFLISFWLKLVVCESAVME NGQEKAWFDGSEDELVRELLDDETPFFVLPQETVQPESKTSEEEATKRLLSTLYSGPR IEDIENALSVPTWKDQSQAQEQTRLNSILDRGLSKIENKYTLKIKCCGNGMADDGYKW RKYGQKSIKNSPNPRSYYKCTNPRCSAKKQVERSRDDPDTLIITYEGLHLHFPYPYFS LDPPLQDDSLTKKPKKAISEAESQAFGASQTTETQAANINCEPLPSSFEGCPQGIALE GFSQQGLLEDVVPWMIRNPSRNNISSNSSSCSSSHSRSPPASPSSVSWTPNYKTFFDI GINSSIR" gene 1736093..1743287 /locus_tag="TCM_021912" /note="dbxref CacaoGD:Thecc1EG021912" mRNA join(1736093..1736383,1736475..1736703,1736787..1736858, 1737163..1737293,1737831..1738316,1738444..1739211, 1739618..1739845,1740670..1741194,1741338..1741934, 1742992..1743287) /locus_tag="TCM_021912" /product="Cell division protease ftsH isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400015503" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041805t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s10620.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc353t2" mRNA join(1736136..1736383,1736475..1736703,1736787..1736858, 1737163..1737293,1737831..1738316,1738444..1739404, 1739618..1739632) /locus_tag="TCM_021912" /product="Cell division protease ftsH isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400015503" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041805t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s10620.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc353t4; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc353t2" CDS join(1736324..1736383,1736475..1736703,1736787..1736858, 1737163..1737293,1737831..1738316,1738444..1739211, 1739618..1739845,1740670..1741149) /locus_tag="TCM_021912" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG041805t1" /codon_start=1 /product="Cell division protease ftsH isoform 1" /protein_id="EOY07491.1" /db_xref="Phytozome:POPTR_0016s10620.1" /db_xref="TAIR:AT1G07510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VZI8" /translation="MIFSRIGRTVSRSSRSAFRTNVISRNLLSNESHVSTPVGNACIS RVNQGLGIVRGYFAPAGTGKHLVSNARLSNLDSILANPRIRRFFSSEGSKKSRYENYY PKNKKEIPKANEQKSQSKEDSGAGDPGNSQNIAKLMQNVITPLLLFGILYTSIFSGPH EQKQISFQEFKNKLLEPGLVEKIVVSNKSVAKVYVRSSPRNANQATDDVTQVPTNGAP ARRNISQYKYYFNIGSVESFEEKLEEAQEALGIDPHDHVPVTYVSEVNWIQELMRLAP TALLLGALWFMGRRMQSGLGVGGSGGRGGRGIFNMGKAHITKLDKNAKDKVFFKDVAG CDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFL SMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGGNDER ESTLNQLLVEMDGFGTTSGVVVLAGTNRPDILDRALLRPGRFDRQITIDKPDIKGREQ IFQIYLKRLKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARNESAQISMEHF ESAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVVGWFLEHAEPLLKVTIVPRGTAA LGFAQYVPNENLLMTKEQLFDMTCMTLGGRASEQVLLGKISTGAQNDLEKVTKMTYAQ VAVYGFSDKVGLLSFPQRDDALEMTKPYSSKTGAIIDSEVREWVGKAYERTVQLIEEH KEHVAQIAELLLEKEVLHQEDLVRVLGERPFKPSEPTNYDRFKRGFQEENKESKDTTE SKTVGDDGSAPLEPEVVPA" CDS join(1736324..1736383,1736475..1736703,1736787..1736858, 1737163..1737293,1737831..1738316,1738444..1739379) /locus_tag="TCM_021912" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG041805t1" /codon_start=1 /product="Cell division protease ftsH isoform 2" /protein_id="EOY07492.1" /db_xref="Phytozome:POPTR_0016s10620.1" /db_xref="TAIR:AT1G07510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VZI8" /translation="MIFSRIGRTVSRSSRSAFRTNVISRNLLSNESHVSTPVGNACIS RVNQGLGIVRGYFAPAGTGKHLVSNARLSNLDSILANPRIRRFFSSEGSKKSRYENYY PKNKKEIPKANEQKSQSKEDSGAGDPGNSQNIAKLMQNVITPLLLFGILYTSIFSGPH EQKQISFQEFKNKLLEPGLVEKIVVSNKSVAKVYVRSSPRNANQATDDVTQVPTNGAP ARRNISQYKYYFNIGSVESFEEKLEEAQEALGIDPHDHVPVTYVSEVNWIQELMRLAP TALLLGALWFMGRRMQSGLGVGGSGGRGGRGIFNMGKAHITKLDKNAKDKVFFKDVAG CDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFL SMSGSDFMEMFVGVGPSRVRSLFQEARQCAPSIIFIDEIDAIGRARGRGGFSGGNDER ESTLNQLLVEMDGFGTTSGVVVLAGTNRPDILDRALLRPGRFDRQITIDKPDIKGREQ IFQIYLKRLKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARNESAQISMEHF ESAIDRVIGGLEKKNKVCCSSFLCFFCLLMHRIIVKSLFDLCVWLCFQRCNCVEERFE FLNVKVWFFCFPV" mobile_element complement(1745757..1745918) /note="source:scaffold_5_CACTA_0580 11361 11542" /mobile_element_type="transposon:TIR/CACTA" gene 1746405..1749318 /locus_tag="TCM_021914" /note="dbxref CacaoGD:Thecc1EG021914" mRNA join(1746405..1746520,1747323..1747432,1747519..1747584, 1747678..1747775,1747922..1747959,1748040..1748127, 1748225..1748551,1748639..1748704,1748810..1749318) /locus_tag="TCM_021914" /product="Haloacid dehalogenase-like hydrolase (HAD) superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s08720.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041806t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s08720.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09898t00001" CDS join(1747372..1747432,1747519..1747584,1747678..1747775, 1747922..1747959,1748040..1748127,1748225..1748551, 1748639..1748704,1748810..1748962) /locus_tag="TCM_021914" /note="paralog of Thecc1EG041806t1" /codon_start=1 /product="Haloacid dehalogenase-like hydrolase (HAD) superfamily protein" /protein_id="EOY07493.1" /db_xref="Phytozome:POPTR_0006s08720.1" /db_xref="TAIR:AT5G02230.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PFF5" /translation="MEFEDRYRLAQRPKYDCLLFDLDDTLYPLSSGLARECGKNIKDY MVEKLGIEKDKIVELSNLLYKNYGTTMAGLRAVGCDFDYDEYHSYVHGRLPYENLKPD PQLRSLLLTLPLRKIIFTNADKVHAAKALNKLGLEDCFEGIICFETLNPTHKNTVSDD EDDIEFLGSAAATSDVPSSPEIFDIVGHFAQPKPGATLPKTPIVCKPQESAIERAVKI ARINPQRTLFFDDSVRNIQAGKRVGLHTVLVGTSQRPKGADYALESIHNIKQALPELW ETDMKSEVSYPGQVAVETSVTA" gene complement(1749252..1754607) /locus_tag="TCM_021915" /note="dbxref CacaoGD:Thecc1EG021915" mRNA complement(join(1749252..1749626,1750006..1750125, 1750269..1750463,1750548..1750691,1750885..1750990, 1751605..1752163,1752581..1752713,1752798..1752928, 1753770..1754040,1754519..1754607)) /locus_tag="TCM_021915" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.33 coverage" CDS complement(join(1749455..1749626,1750006..1750125, 1750269..1750463,1750548..1750691,1750885..1750990, 1751605..1752163,1752581..1752713,1752798..1752928, 1753770..1754040,1754519..1754538)) /locus_tag="TCM_021915" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07494.1" /translation="MPHKPGRLPTKGRIKSWCLTNATCVHFVVILRRQRAHLFFSCPL WEKVMQLCCLTRDIGDWNNEFACVKHRLKGKTILECLCLHKIWTERNGRLHIRDVVES SEISVQRHANPTLAQIKQHSEVVAKRYKALISLQLTVSKTKVMQIMNLSKQFEVMKMK EEENIQEYTDKLLQLVNQLRMLGQKETEGKAAVAEEANKSEEVLFMAKADDDITNKCT WLIDIGCSNQLTGNANLFTELDESYRARVKIGNSLYMKILGVGTIGVTTVASMKFIHE VHYVPKADQNLLNIGQLDDNGYALLFNNRQYTIFDPVGAELLTVSMRNKCYPMDLLES KQQAFYSEYDSLELWHKHVGYVNYNSLPTMASKELMLVFGCVCYAQIPDVKRSKFDSK AFTTAHIGYGEKSKGFTQAPTLLHLTTTKRILRYVKGIADFGLRYVRQDSGELVGYSD NDWASVVAQSTTKAEYIATATALNQLRWLRKILADLGFKQDNGTVIFVDNISAIAIAK IQYTMGEPSISRPWGNVKRVTFKSGNRVSDGNGKQLKVGRLKKDSSKCGTVSSLLLIT KYDKKSSRIIAAKPNSLCLQLHAIDGPARYISDAKGRDFQGFSRLPQSQP" mobile_element 1750779..1753160 /note="source:INTACT501_F232_scaffold_3-int 2299 4682" /mobile_element_type="retrotransposon:LTR/Copia" gene 1754528..1757838 /locus_tag="TCM_021916" /note="dbxref CacaoGD:Thecc1EG021916" mRNA join(1754528..1755122,1755967..1756238,1756334..1756370, 1756470..1756571,1756640..1756661,1756726..1756790, 1757137..1757161) /locus_tag="TCM_021916" /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034152001" /inference="similar to AA sequence:ricco:29767.m000205" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1258t6; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1258t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1371t1" mRNA join(1754685..1755122,1755967..1756238,1756334..1756370, 1756470..1756567,1756729..1756790,1757137..1757260, 1757360..1757838) /locus_tag="TCM_021916" /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034152001" /inference="similar to AA sequence:ricco:29767.m000205" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1371t1" CDS join(1754834..1755122,1755967..1756238,1756334..1756370, 1756470..1756567,1756729..1756790,1757137..1757260, 1757360..1757479) /locus_tag="TCM_021916" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29767.m000205" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 1" /protein_id="EOY07495.1" /db_xref="TAIR:AT2G37660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80934" /translation="MAKLTRVPWVFSCTVPAPSSKSLGHCHKCNCVASSTPLTRKVPD CSTLSWPSFNSFSISSSSLSTRNKKGFRRKTVVLASMADLSTVLVTGAGGRTGQILYK KLKERSDQFVTRGLVRTPESKEKIGGADDVFVGDIRDPSTLVPAIQGVDALIILTSAV PRMKPGFDPTKGGRPEFYFDDGAYPEQVDWIGQKNQIDVAKEAGVKRIVLVGSMGGTN LNHPLNSLGNGNILVWKRKAEQYLADSGVPYTIIRAGGLQDRDGGIRELLVGKDDELL QTETRTIARPDVAEVCIQALKFEETKFKAFDLASKPEGVGIPTKDFKALFSQITTPF" CDS join(1754834..1755122,1755967..1756238,1756334..1756370, 1756470..1756571,1756640..1756644) /locus_tag="TCM_021916" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29767.m000205" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 2" /protein_id="EOY07496.1" /db_xref="TAIR:AT2G37660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80934" /translation="MAKLTRVPWVFSCTVPAPSSKSLGHCHKCNCVASSTPLTRKVPD CSTLSWPSFNSFSISSSSLSTRNKKGFRRKTVVLASMADLSTVLVTGAGGRTGQILYK KLKERSDQFVTRGLVRTPESKEKIGGADDVFVGDIRDPSTLVPAIQGVDALIILTSAV PRMKPGFDPTKGGRPEFYFDDGAYPEQVDWIGQKNQIDVAKEAGVKRIVLVGSMGGTN LNHPLNSLGNGNILVK" gene 1757959..1759976 /locus_tag="TCM_021917" /note="dbxref CacaoGD:Thecc1EG021917" mRNA join(1757959..1758256,1758362..1758421,1758523..1758663, 1758747..1758831,1759787..1759976) /locus_tag="TCM_021917" /product="UPF0161 protein" /inference="alignment:exonerate-protein:2:frave:gene18434" /inference="similar to AA sequence:ricco:29767.m000204" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00319t00002" CDS join(1758064..1758256,1758362..1758421,1758523..1758663, 1758747..1758805) /locus_tag="TCM_021917" /note="dbxref ricco:29767.m000204" /codon_start=1 /product="UPF0161 protein" /protein_id="EOY07497.1" /db_xref="TAIR:AT3G09310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SR32" /translation="MAVINSLNNHKPFLPLSTQPKNPNFISINFDPRIPNQISGFRFP AHRNLTANGSLQNSDQNTPQGDEVESLGVKAALSVLKFYKREISPLIPKSCRFVPTCS EYSMEAYKKYGVVKGTVLTAWRLCRCNPLGGSGFDPPRWFDEERPTEE" gene 1759018..1760238 /locus_tag="TCM_021918" /note="dbxref CacaoGD:Thecc1EG021918" mRNA 1759018..1760238 /locus_tag="TCM_021918" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.65 coverage" CDS 1759169..1759420 /locus_tag="TCM_021918" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07498.1" /translation="MAFIRKKVEEGRDKMLNCVWQILKCEFCRRSYVAVMLKMKVEHS ESMKVLFSLSIAILGLLYCRLLSVHFSTIDLPGLLTFSK" gene complement(1760279..1765928) /locus_tag="TCM_021920" /note="dbxref CacaoGD:Thecc1EG021920" mRNA complement(join(1760279..1760306,1761716..1765106)) /locus_tag="TCM_021920" /product="GRAS family transcription factor isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s08690.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042705t3" /inference="similar to AA sequence:Phytozome:POPTR_0006s08690.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.14 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc572t18; alternateUTRof:Thecc1EG021920t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc572t18" mRNA complement(join(1761219..1761561,1761716..1764502, 1765830..1765928)) /locus_tag="TCM_021920" /product="GRAS family transcription factor isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s08690.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042705t3" /inference="similar to AA sequence:Phytozome:POPTR_0006s08690.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.22 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc572t18" CDS complement(1761786..1764053) /locus_tag="TCM_021920" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042705t3" /codon_start=1 /product="GRAS family transcription factor isoform 1" /protein_id="EOY07499.1" /db_xref="Phytozome:POPTR_0006s08690.1" /db_xref="TAIR:AT2G37650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HBM9" /translation="MVMDPRFRGFSGFQLSNQTVSVFPSQPASVFPNQNSVAGPRFQN TYIDHNFREFDYHPPDPTPSNMAPISSLSHEEDPSEDCDFSDSVLRYINHILLEEDME DKSCMLQESLDLQAAEKSFYDVLGKKYPPSPSAEQNSTFVYESGENPDDSFVGNYSSY FSSCSDGSSYVIDTGRMQNLGDYSTTQAQSLPVSGMSQSSYSSSMASIDGLIESPNST LQVPDWNGEIHSIWQFRKGVEEASKFIPGSEELFGNLEVCGVESQESKGWTSGLVVKE EKKDEGEYSPTGSKGKKISRRDDVETEEERCSKQAAVYSESIVRSEMFDMVLLCSSGK APTHFTNLRESLRNGTSKNVRQNGQSKGPNGGKGRGKKQNGKKEVVDLRTLLIHCAQA VAADDRRSANELLKQIRQHTSRFGDGNQRLAHCFADGLEARLAGTGSQIYKGLVSKRT SASDILKAYLLHVAACPFRKVSHFICNKTINVASRKSMKLHVIDFGILYGFQWPTLIE RLSLRSEGPPKLRITGIDFPQPGFRPAERVEETGRRLAAYAKEFKVPFQYNAIAKKWD NIRVEELDIHEDEFVVVNCLYRAKNLLDETVAVDSPRNIVLNLIRKINPNIFIHGIMN GAYNAPFFVTRFREALFHFSSMFDMLETIVPREDWERMLIEKEILGREALNVIACEGW ERVERPETFKQWHARNLRAGFVQLPFGREIVKGATERVRSFYHKDFVIDEDSRWLLQG WKGRIIYALSAWKPA" CDS complement(1761786..1764053) /locus_tag="TCM_021920" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042705t3" /codon_start=1 /product="GRAS family transcription factor isoform 1" /protein_id="EOY07500.1" /db_xref="Phytozome:POPTR_0006s08690.1" /db_xref="TAIR:AT2G37650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HBM9" /translation="MVMDPRFRGFSGFQLSNQTVSVFPSQPASVFPNQNSVAGPRFQN TYIDHNFREFDYHPPDPTPSNMAPISSLSHEEDPSEDCDFSDSVLRYINHILLEEDME DKSCMLQESLDLQAAEKSFYDVLGKKYPPSPSAEQNSTFVYESGENPDDSFVGNYSSY FSSCSDGSSYVIDTGRMQNLGDYSTTQAQSLPVSGMSQSSYSSSMASIDGLIESPNST LQVPDWNGEIHSIWQFRKGVEEASKFIPGSEELFGNLEVCGVESQESKGWTSGLVVKE EKKDEGEYSPTGSKGKKISRRDDVETEEERCSKQAAVYSESIVRSEMFDMVLLCSSGK APTHFTNLRESLRNGTSKNVRQNGQSKGPNGGKGRGKKQNGKKEVVDLRTLLIHCAQA VAADDRRSANELLKQIRQHTSRFGDGNQRLAHCFADGLEARLAGTGSQIYKGLVSKRT SASDILKAYLLHVAACPFRKVSHFICNKTINVASRKSMKLHVIDFGILYGFQWPTLIE RLSLRSEGPPKLRITGIDFPQPGFRPAERVEETGRRLAAYAKEFKVPFQYNAIAKKWD NIRVEELDIHEDEFVVVNCLYRAKNLLDETVAVDSPRNIVLNLIRKINPNIFIHGIMN GAYNAPFFVTRFREALFHFSSMFDMLETIVPREDWERMLIEKEILGREALNVIACEGW ERVERPETFKQWHARNLRAGFVQLPFGREIVKGATERVRSFYHKDFVIDEDSRWLLQG WKGRIIYALSAWKPA" gene complement(1766104..1771538) /locus_tag="TCM_021921" /note="dbxref CacaoGD:Thecc1EG021921" mRNA complement(join(1766104..1766848,1767307..1767370, 1767458..1767772,1767979..1768190,1768546..1768625, 1768727..1768789,1768895..1769086,1769315..1770122, 1770208..1770357,1771265..1771538)) /locus_tag="TCM_021921" /product="Telomeric DNA binding protein 1, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s08680.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041816t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s08680.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04548t00001" mRNA complement(join(1766104..1766848,1767307..1767772, 1767979..1768190,1768546..1768625,1768727..1768789, 1768895..1769086,1769315..1770122,1770208..1770357, 1771265..1771538)) /locus_tag="TCM_021921" /product="Telomeric DNA binding protein 1, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s08680.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s08680.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:PASA:2:TSA:puevd3b021219t1a2; inference alignment:Newbler:10:TSA:cgbaB_g04548t00001" mRNA complement(join(1766461..1766848,1767307..1767370, 1767458..1767772,1767979..1768190,1768546..1768625, 1768727..1768789,1768895..1769086,1769315..1769821)) /locus_tag="TCM_021921" /product="Telomeric DNA binding protein 1, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s08680.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041816t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s08680.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02265t00002; inference alignment:Newbler:10:TSA:cgbaB_g04548t00001" CDS complement(join(1766705..1766848,1767307..1767370, 1767458..1767772,1767979..1768190,1768546..1768625, 1768727..1768789,1768895..1769086,1769315..1770122, 1770208..1770288)) /locus_tag="TCM_021921" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG041816t1" /codon_start=1 /product="Telomeric DNA binding protein 1, putative isoform 1" /protein_id="EOY07501.1" /db_xref="Phytozome:POPTR_0006s08680.1" /translation="MVSGTRLDYGFSGYQVPVFPRASRSARGRVPIRKKGGNSQKHAF EILASVAGELLQESKIFVPPNCKEDQQNTPKNIVLKERDEGQLSKCNHSVQETHDEKT FIQGYHQIYTLNKFSHSQDRFNLKACSSIKSFDQSEKLCLADQLANVNDRNASPSAKI GNSSLVSGEFSEGQIEDAGAELSSIQSVKSATLPVTGSFDMLEMDCKPHALFCSESKL KASLFEDWITLRPSGHADNIETVDRDDDENDTGCTQAATTVKAFRLPSDVADQRIKNL SAGRHWRVSPNLNGGASFKNDGKRRSFFRNGRTSYTRQRSQRISPFNRRKLFNQFPFS VPDRGFQFEDKFNSADKRSNCDNCTAAVGVASSVARRHSQPGPRDRNVKLRIKSFTVP ELFVEIPTTATVGSLKRTVMEAVTTVLGDGLHVGIFLQGKKVRDDSKTLFQTGISQDH KHRNLGFALEPRHAQIIPPPGPGEQGLTRHATSLTPEPGTSSVSLVPPLTSWNSGAQS DLHLVSCLSNISADRTIPNSQSLVSIPAISVEALAVVPFHHRPGCHEFVQRRIRRPFS VAEVEALVQAVEKLGTGRWRDVKLGAFDNAKHRTYVDLKDKWKTLVHTARISPQQRRG EPVPQELLDRVLAAHAYWSRHQAKQKLK" CDS complement(join(1766705..1766848,1767307..1767370, 1767458..1767772,1767979..1768190,1768546..1768625, 1768727..1768789,1768895..1769086,1769315..1769603)) /locus_tag="TCM_021921" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG041816t1" /codon_start=1 /product="Telomeric DNA binding protein 1, putative isoform 3" /protein_id="EOY07503.1" /db_xref="Phytozome:POPTR_0006s08680.1" /db_xref="TAIR:AT1G07540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HBM8" /translation="MLEMDCKPHALFCSESKLKASLFEDWITLRPSGHADNIETVDRD DDENDTGCTQAATTVKAFRLPSDVADQRIKNLSAGRHWRVSPNLNGGASFKNDGKRRS FFRNGRTSYTRQRSQRISPFNRRKLFNQFPFSVPDRGFQFEDKFNSADKRSNCDNCTA AVGVASSVARRHSQPGPRDRNVKLRIKSFTVPELFVEIPTTATVGSLKRTVMEAVTTV LGDGLHVGIFLQGKKVRDDSKTLFQTGISQDHKHRNLGFALEPRHAQIIPPPGPGEQG LTRHATSLTPEPGTSSVSLVPPLTSWNSGAQSDLHLVSCLSNISADRTIPNSQSLVSI PAISVEALAVVPFHHRPGCHEFVQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLGA FDNAKHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWSRHQAKQK LK" CDS complement(join(1767445..1767772,1767979..1768190, 1768546..1768625,1768727..1768789,1768895..1769086, 1769315..1770122,1770208..1770288)) /locus_tag="TCM_021921" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Telomeric DNA binding protein 1, putative isoform 2" /protein_id="EOY07502.1" /db_xref="Phytozome:POPTR_0006s08680.1" /translation="MVSGTRLDYGFSGYQVPVFPRASRSARGRVPIRKKGGNSQKHAF EILASVAGELLQESKIFVPPNCKEDQQNTPKNIVLKERDEGQLSKCNHSVQETHDEKT FIQGYHQIYTLNKFSHSQDRFNLKACSSIKSFDQSEKLCLADQLANVNDRNASPSAKI GNSSLVSGEFSEGQIEDAGAELSSIQSVKSATLPVTGSFDMLEMDCKPHALFCSESKL KASLFEDWITLRPSGHADNIETVDRDDDENDTGCTQAATTVKAFRLPSDVADQRIKNL SAGRHWRVSPNLNGGASFKNDGKRRSFFRNGRTSYTRQRSQRISPFNRRKLFNQFPFS VPDRGFQFEDKFNSADKRSNCDNCTAAVGVASSVARRHSQPGPRDRNVKLRIKSFTVP ELFVEIPTTATVGSLKRTVMEAVTTVLGDGLHVGIFLQGKKVRDDSKTLFQTGISQDH KHRNLGFALEPRHAQIIPPPGPGEQGLTRHATSLTPEPGTSSVSLVPPLTSWNSGAQS DLHLVSCLSNISADRTIPNSQSLVSIPAISVEALAVVPFHHRPGCHEFVQRRIRRPFS VAEVEALVQAVEKLGTGRLLL" mRNA complement(join(1767745..1768190,1768546..1768625, 1768727..1768789,1768895..1769086,1769315..1770122, 1770208..1770357,1771265..1771492)) /locus_tag="TCM_021921" /product="Telomeric DNA binding protein 1, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s08680.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s08680.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc964t6; inference alignment:Newbler:10:TSA:cgbaB_g04548t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1303t1" CDS complement(join(1767975..1768190,1768546..1768625, 1768727..1768789,1768895..1769086,1769315..1770122, 1770208..1770288)) /locus_tag="TCM_021921" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Telomeric DNA binding protein 1, putative isoform 4" /protein_id="EOY07504.1" /db_xref="Phytozome:POPTR_0006s08680.1" /translation="MVSGTRLDYGFSGYQVPVFPRASRSARGRVPIRKKGGNSQKHAF EILASVAGELLQESKIFVPPNCKEDQQNTPKNIVLKERDEGQLSKCNHSVQETHDEKT FIQGYHQIYTLNKFSHSQDRFNLKACSSIKSFDQSEKLCLADQLANVNDRNASPSAKI GNSSLVSGEFSEGQIEDAGAELSSIQSVKSATLPVTGSFDMLEMDCKPHALFCSESKL KASLFEDWITLRPSGHADNIETVDRDDDENDTGCTQAATTVKAFRLPSDVADQRIKNL SAGRHWRVSPNLNGGASFKNDGKRRSFFRNGRTSYTRQRSQRISPFNRRKLFNQFPFS VPDRGFQFEDKFNSADKRSNCDNCTAAVGVASSVARRHSQPGPRDRNVKLRIKSFTVP ELFVEIPTTATVGSLKRTVMEAVTTVLGDGLHVGIFLQGKKVRDDSKTLFQTGISQDH KHRNLGFALEPRHAQIIPPPGPGEQGLTR" gene complement(1771585..1776114) /locus_tag="TCM_021922" /note="dbxref CacaoGD:Thecc1EG021922" mRNA complement(join(1771585..1772160,1772290..1772468, 1773031..1773175,1773421..1773597,1773949..1774070, 1774212..1774330,1774411..1774483,1774582..1774698, 1775325..1775418,1775748..1776114)) /locus_tag="TCM_021922" /product="Oxysterol-binding family protein" /inference="alignment:exonerate- protein:2:ricco:29846.m000181" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041817t1" /inference="similar to AA sequence:ricco:29846.m000181" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02286t00001" CDS complement(join(1771914..1772160,1772290..1772468, 1773031..1773175,1773421..1773597,1773949..1774070, 1774212..1774330,1774411..1774483,1774582..1774698, 1775325..1775418,1775748..1775845)) /locus_tag="TCM_021922" /note="dbxref ricco:29846.m000181; paralog of Thecc1EG041817t1" /codon_start=1 /product="Oxysterol-binding family protein" /protein_id="EOY07505.1" /db_xref="TAIR:AT5G02100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SR33" /translation="MAPNDPKQSGGFFSSIANSLSNFGSAMTKSVNGLLGYEGLEVVN PEGGTEDAEEEARRGRWKQEERDSYWKMMQKYIGSDVTSMVTLPVLIFEPMSMLQKMV ELMEYSYLLDLADECEDPYMRMVYTTSWAISVYYAYQRTWKPFNPILGETYEMVNHGG ITFIAEQVSHHPPMSAGHAENEHFIYDISSKVKTKFLGNSIDIYPLGRTRVTLKRDGV VLDLVPPPTKVNNLIFGRTWVDSPGEMVMTNLTTGDKAVLYFQPCGWFGAGRYEIDGY VYNAAEEPKILMTGKWNESMSYQPCDSEGEPLPGTELKEAWKVADAPKNDKFQYTYFA HKINSFDTAPQKLLASDSRLRPDRYALEQGDLTKAGLEKSSMEERQRAEKKNREEKGH KFTPKWFDFTNEVATTPWGDLEVYQYNGKYTQHRAAIDSSSSGEEIDVRSIEFNPWQY EDLAAN" gene 1777399..1783426 /locus_tag="TCM_021923" /note="dbxref CacaoGD:Thecc1EG021923" mRNA join(1777399..1777420,1780124..1780719,1780861..1781024, 1781783..1781946,1782057..1782313,1782628..1782754, 1783007..1783426) /locus_tag="TCM_021923" /product="RHOMBOID-like 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034160001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041822t1" /inference="similar to AA sequence:Phytozome:Glyma03g13780.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13186t1" CDS join(1780403..1780719,1780861..1781024,1781783..1781946, 1782057..1782313,1782628..1782754,1783007..1783129) /locus_tag="TCM_021923" /note="paralog of Thecc1EG041822t1" /codon_start=1 /product="RHOMBOID-like 1" /protein_id="EOY07506.1" /db_xref="Phytozome:Glyma03g13780.1" /db_xref="TAIR:AT2G29050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WQX7" /translation="MATDPSPQIPTRASSRRSSNLIHPVDVETPPVRTPSPIVYREIK HFKKWVPWLIPAFVVANTVMLIITMYVNNCPKNSVSCIADFLGRFSFQPFKENPLLGP SSATLQKMGALDVKKVVDGHQGWRLITCNWLHGGVFHLLANMLSLLVIGIRLEREFGF IRIGLLYIISGFGGSLLSALFIQSNISVGASGALFGLLGAMLSELITNWTIYANKVAA FVTLLVIIAINLAVGILPHVDNFAHIGGFLTGFLLGFVFLIRPQFGWVSQRYAPPGYS SSAKPKFKTYQCFLWIVSLILLIVGLTLGLVMLLRGVDANDHCSWCHYLSCVPTSRWS CNTEPAYCSSTQLGSQVNVTCSTNGKTTTYFMPSASSSQIQSLCSQQCS" gene 1783463..1797913 /locus_tag="TCM_021924" /note="dbxref CacaoGD:Thecc1EG021924" mRNA join(1783463..1784322,1784835..1784994,1785127..1785240, 1785330..1785407,1785475..1785606,1785773..1785994, 1786203..1786385,1786636..1786698,1786784..1786890, 1786965..1787114,1787597..1787756,1787882..1788277, 1788601..1788825,1788960..1789165,1789255..1789797, 1797842..1797913) /locus_tag="TCM_021924" /product="Ribonuclease II, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s08640.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s08640.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc801t2" mRNA join(1783952..1784322,1784835..1785031,1785127..1785240, 1785329..1785407,1785475..1785606,1785773..1785994, 1786203..1786385,1786636..1786698,1786784..1786890, 1786965..1787114,1787597..1787756,1787882..1788277, 1788601..1788825,1788960..1789165,1789262..1789750) /locus_tag="TCM_021924" /product="Ribonuclease II/R family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s08640.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s08640.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1277t5; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc801t2" mRNA join(1784012..1784322,1784835..1784994,1785127..1785240, 1785330..1785407,1785475..1785606,1785773..1785994, 1786203..1786385,1786636..1786698,1786784..1786890, 1786965..1787114,1787597..1787756,1787882..1788277, 1788601..1788825,1788960..1789165,1789262..1789290) /locus_tag="TCM_021924" /product="Ribonuclease II, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s08640.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s08640.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc801t2; alternateUTRof:Thecc1EG021924t1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc801t2" mRNA join(1784016..1784322,1784835..1785031,1785127..1785407, 1785475..1785606,1785773..1785994,1786203..1786385, 1786636..1786698,1786784..1786890,1786965..1787114, 1787597..1787756,1787882..1788277,1788601..1788825, 1788960..1789165,1789255..1789495) /locus_tag="TCM_021924" /product="Ribonuclease II/R family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s08640.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s08640.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc735t6; alternateUTRof:Thecc1EG021924t2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc801t2" mRNA join(1784016..1784322,1784835..1785031,1785127..1785407, 1785475..1785606,1785773..1785994,1786203..1786385, 1786636..1786698,1786784..1786890,1786965..1787114, 1787597..1787756,1787882..1788277,1788601..1788825, 1788960..1789165,1789262..1789286) /locus_tag="TCM_021924" /product="Ribonuclease II/R family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s08640.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s08640.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc735t13; alternateUTRof:Thecc1EG021924t2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc801t2" CDS join(1784051..1784322,1784835..1784994,1785127..1785240, 1785330..1785407,1785475..1785606,1785773..1785994, 1786203..1786385,1786636..1786698,1786784..1786890, 1786965..1787114,1787597..1787756,1787882..1788277, 1788601..1788825,1788960..1789085) /locus_tag="TCM_021924" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Ribonuclease II, putative isoform 1" /protein_id="EOY07507.1" /db_xref="Phytozome:POPTR_0006s08640.1" /db_xref="TAIR:AT5G02250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T6X7" /translation="MMAVRAVNGGSLFRSAASPPLLAFWCGFRHFSSLPFRRNSELGL RFPIFCCENQFLGYGVGRSCSAYSLVDCVMEELAASRQRRRVRANVKVRITSTGELLE DKLVNRELEKGLLLEFKKDSDRILLGVAQRPDGKKNWMVYDQNGFTSSIKPQQITYIV PGVENFDQTDISKFLQKAEENLDPTLLEIAWVELLEKNKSVTAEELAEMIFGSAEPLE SYCAHLLLSKDEVYFAVQETKGYCSIYVPRPTRQVEELLHKKLAKEAAEKELQDFVQL LVSAKAKPAHAKPSKSLWMMDEKIRNKIESLEAYAIDDCKSDEQKRTAGMILKTMGLT KTVSSALNLLINIGYFPVHVNLDLLKFNIRTNHSDEIIAAAESLLSESYDPDEVNRKD LTDLKVYAIDVDDADELDDALSATRLQDGRIRVWIHAADPTRYVQPGSMVDREALRRG TSVFLATGTYPMFPEKLAMEGMSLKQGELCNAVSISVVLHSDGSIAEYSVQNSIIKPT YMLTYESATELLYLNLEEEAELKMLSEAAALRLKWRRQQGAIDTSTLETRIKVVNPED PEPSINLYVENQADPAMQLVSEMMILCGEVVATFGSANNLPLPYRGQPQSNIDVSAFS HLPEGPVRSSAIVRIMRAAEIDFRKPIRHGVLGVPGYVQFTSPIRRYLDLLAHYQVKA FLRGESPPFSAGQLEGMASIVNMQVRLVRRLSGSSLRYWIIEFLRRQPREKKYRALIL RFIKDRVAALLLVEVGLQASAWVSIGAQVGDEVEVQVEEAHPRDDVLSLKEVIRN" CDS join(1784051..1784322,1784835..1784994,1785127..1785240, 1785330..1785407,1785475..1785606,1785773..1785994, 1786203..1786385,1786636..1786698,1786784..1786890, 1786965..1787114,1787597..1787756,1787882..1788277, 1788601..1788825,1788960..1789085) /locus_tag="TCM_021924" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Ribonuclease II, putative isoform 1" /protein_id="EOY07510.1" /db_xref="Phytozome:POPTR_0006s08640.1" /db_xref="TAIR:AT5G02250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T6X7" /translation="MMAVRAVNGGSLFRSAASPPLLAFWCGFRHFSSLPFRRNSELGL RFPIFCCENQFLGYGVGRSCSAYSLVDCVMEELAASRQRRRVRANVKVRITSTGELLE DKLVNRELEKGLLLEFKKDSDRILLGVAQRPDGKKNWMVYDQNGFTSSIKPQQITYIV PGVENFDQTDISKFLQKAEENLDPTLLEIAWVELLEKNKSVTAEELAEMIFGSAEPLE SYCAHLLLSKDEVYFAVQETKGYCSIYVPRPTRQVEELLHKKLAKEAAEKELQDFVQL LVSAKAKPAHAKPSKSLWMMDEKIRNKIESLEAYAIDDCKSDEQKRTAGMILKTMGLT KTVSSALNLLINIGYFPVHVNLDLLKFNIRTNHSDEIIAAAESLLSESYDPDEVNRKD LTDLKVYAIDVDDADELDDALSATRLQDGRIRVWIHAADPTRYVQPGSMVDREALRRG TSVFLATGTYPMFPEKLAMEGMSLKQGELCNAVSISVVLHSDGSIAEYSVQNSIIKPT YMLTYESATELLYLNLEEEAELKMLSEAAALRLKWRRQQGAIDTSTLETRIKVVNPED PEPSINLYVENQADPAMQLVSEMMILCGEVVATFGSANNLPLPYRGQPQSNIDVSAFS HLPEGPVRSSAIVRIMRAAEIDFRKPIRHGVLGVPGYVQFTSPIRRYLDLLAHYQVKA FLRGESPPFSAGQLEGMASIVNMQVRLVRRLSGSSLRYWIIEFLRRQPREKKYRALIL RFIKDRVAALLLVEVGLQASAWVSIGAQVGDEVEVQVEEAHPRDDVLSLKEVIRN" CDS join(1785475..1785606,1785773..1785994,1786203..1786385, 1786636..1786698,1786784..1786890,1786965..1787114, 1787597..1787756,1787882..1788277,1788601..1788825, 1788960..1789085) /locus_tag="TCM_021924" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Ribonuclease II/R family protein isoform 2" /protein_id="EOY07508.1" /db_xref="Phytozome:POPTR_0006s08640.1" /db_xref="TAIR:AT5G02250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NQJ6" /translation="MIFGSAEPLESYCAHLLLSKDEVYFAVQETKGYCSIYVPRPTRQ VEELLHKKLAKEAAEKELQDFVQLLVSAKAKPAHAKPSKSLWMMDEKIRNKIESLEAY AIDDCKSDEQKRTAGMILKTMGLTKTVSSALNLLINIGYFPVHVNLDLLKFNIRTNHS DEIIAAAESLLSESYDPDEVNRKDLTDLKVYAIDVDDADELDDALSATRLQDGRIRVW IHAADPTRYVQPGSMVDREALRRGTSVFLATGTYPMFPEKLAMEGMSLKQGELCNAVS ISVVLHSDGSIAEYSVQNSIIKPTYMLTYESATELLYLNLEEEAELKMLSEAAALRLK WRRQQGAIDTSTLETRIKVVNPEDPEPSINLYVENQADPAMQLVSEMMILCGEVVATF GSANNLPLPYRGQPQSNIDVSAFSHLPEGPVRSSAIVRIMRAAEIDFRKPIRHGVLGV PGYVQFTSPIRRYLDLLAHYQVKAFLRGESPPFSAGQLEGMASIVNMQVRLVRRLSGS SLRYWIIEFLRRQPREKKYRALILRFIKDRVAALLLVEVGLQASAWVSIGAQVGDEVE VQVEEAHPRDDVLSLKEVIRN" CDS join(1785475..1785606,1785773..1785994,1786203..1786385, 1786636..1786698,1786784..1786890,1786965..1787114, 1787597..1787756,1787882..1788277,1788601..1788825, 1788960..1789085) /locus_tag="TCM_021924" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Ribonuclease II/R family protein isoform 2" /protein_id="EOY07509.1" /db_xref="Phytozome:POPTR_0006s08640.1" /db_xref="TAIR:AT5G02250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NQJ6" /translation="MIFGSAEPLESYCAHLLLSKDEVYFAVQETKGYCSIYVPRPTRQ VEELLHKKLAKEAAEKELQDFVQLLVSAKAKPAHAKPSKSLWMMDEKIRNKIESLEAY AIDDCKSDEQKRTAGMILKTMGLTKTVSSALNLLINIGYFPVHVNLDLLKFNIRTNHS DEIIAAAESLLSESYDPDEVNRKDLTDLKVYAIDVDDADELDDALSATRLQDGRIRVW IHAADPTRYVQPGSMVDREALRRGTSVFLATGTYPMFPEKLAMEGMSLKQGELCNAVS ISVVLHSDGSIAEYSVQNSIIKPTYMLTYESATELLYLNLEEEAELKMLSEAAALRLK WRRQQGAIDTSTLETRIKVVNPEDPEPSINLYVENQADPAMQLVSEMMILCGEVVATF GSANNLPLPYRGQPQSNIDVSAFSHLPEGPVRSSAIVRIMRAAEIDFRKPIRHGVLGV PGYVQFTSPIRRYLDLLAHYQVKAFLRGESPPFSAGQLEGMASIVNMQVRLVRRLSGS SLRYWIIEFLRRQPREKKYRALILRFIKDRVAALLLVEVGLQASAWVSIGAQVGDEVE VQVEEAHPRDDVLSLKEVIRN" CDS join(1785475..1785606,1785773..1785994,1786203..1786385, 1786636..1786698,1786784..1786890,1786965..1787114, 1787597..1787756,1787882..1788277,1788601..1788825, 1788960..1789085) /locus_tag="TCM_021924" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Ribonuclease II/R family protein isoform 2" /protein_id="EOY07511.1" /db_xref="Phytozome:POPTR_0006s08640.1" /db_xref="TAIR:AT5G02250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NQJ6" /translation="MIFGSAEPLESYCAHLLLSKDEVYFAVQETKGYCSIYVPRPTRQ VEELLHKKLAKEAAEKELQDFVQLLVSAKAKPAHAKPSKSLWMMDEKIRNKIESLEAY AIDDCKSDEQKRTAGMILKTMGLTKTVSSALNLLINIGYFPVHVNLDLLKFNIRTNHS DEIIAAAESLLSESYDPDEVNRKDLTDLKVYAIDVDDADELDDALSATRLQDGRIRVW IHAADPTRYVQPGSMVDREALRRGTSVFLATGTYPMFPEKLAMEGMSLKQGELCNAVS ISVVLHSDGSIAEYSVQNSIIKPTYMLTYESATELLYLNLEEEAELKMLSEAAALRLK WRRQQGAIDTSTLETRIKVVNPEDPEPSINLYVENQADPAMQLVSEMMILCGEVVATF GSANNLPLPYRGQPQSNIDVSAFSHLPEGPVRSSAIVRIMRAAEIDFRKPIRHGVLGV PGYVQFTSPIRRYLDLLAHYQVKAFLRGESPPFSAGQLEGMASIVNMQVRLVRRLSGS SLRYWIIEFLRRQPREKKYRALILRFIKDRVAALLLVEVGLQASAWVSIGAQVGDEVE VQVEEAHPRDDVLSLKEVIRN" gene complement(1790302..1791692) /locus_tag="TCM_021925" /note="dbxref CacaoGD:Thecc1EG021925" mRNA complement(1790302..1791692) /locus_tag="TCM_021925" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.38 coverage" CDS complement(1791006..1791266) /locus_tag="TCM_021925" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07512.1" /translation="MVRRYQKETQHFYNVKTQLVQKNIAATSSSPSNIYVQVHLGRPG PSQFSDGEKVLVQCSNSICETKAFFFHIYGLQSLFGSRQQTG" gene 1792037..1792750 /locus_tag="TCM_021926" /note="dbxref CacaoGD:Thecc1EG021926" mRNA 1792037..1792750 /locus_tag="TCM_021926" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.20 coverage" CDS 1792229..1792714 /locus_tag="TCM_021926" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07513.1" /translation="MELILKRLYQIMCAYSDKRVLEYGQGSVVFWVGWQWTQKPMKME EFKWERMQRRRGDPHGRRNVKQVSPVCDGGALSPFDKDAPTWLCPDFVSAPCTFAPPS LDTFYLSLCHGRVQLILIINLCYDNKLVKCLIYNFYLCQNFHFRIQLKFIIGSVSASA S" mobile_element complement(1800435..1800813) /note="source:scaffold_4_CACTA_0505 10638 11020" /mobile_element_type="transposon:TIR/CACTA" gene 1802009..1804012 /locus_tag="TCM_021927" /note="dbxref CacaoGD:Thecc1EG021927" mRNA join(1802009..1802352,1802569..1802887,1803576..1804012) /locus_tag="TCM_021927" /product="Expansin A4, ALPHA 1.6,EXPA4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma18g39850.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042703t1" /inference="similar to AA sequence:Phytozome:GSVIVT01016525001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01594t00002" CDS join(1802190..1802352,1802569..1802887,1803576..1803885) /locus_tag="TCM_021927" /note="paralog of Thecc1EG042703t1" /codon_start=1 /product="Expansin A4, ALPHA 1.6,EXPA4" /protein_id="EOY07514.1" /db_xref="Phytozome:GSVIVT01016525001" /db_xref="TAIR:AT2G39700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M2S9" /translation="MAAAATSSLTVLCFASLLSFSVVVNARIPGVYTGGSWESAHATF YGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCH PGSPSIFVTATNFCPPNYALPSDNGGWCNPPRSHFDLAMPMFLKIAEYRAGIVPVSFR RVPCRKQGGIRFTINGFRYFNLVLVTNVAGAGDIVKVSVKGTKTGWLSMSRNWGQNWQ SNAVLVGQALSFRVTGSDKRTSTSWNVASANWQFGQTFTGKNFRV" gene complement(1807505..1810656) /locus_tag="TCM_021928" /note="dbxref CacaoGD:Thecc1EG021928" mRNA complement(join(1807505..1808023,1808208..1808285, 1808394..1808546,1808721..1808816,1809081..1809200, 1809579..1809712,1809801..1810134,1810513..1810656)) /locus_tag="TCM_021928" /product="Non-intrinsic ABC protein 9" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031286001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003989t1" /inference="similar to AA sequence:Phytozome:GSVIVT01031286001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03726t00001" CDS complement(join(1807784..1808023,1808208..1808285, 1808394..1808546,1808721..1808816,1809081..1809200, 1809579..1809712,1809801..1809966)) /locus_tag="TCM_021928" /note="paralog of Thecc1EG003989t1" /codon_start=1 /product="Non-intrinsic ABC protein 9" /protein_id="EOY07515.1" /db_xref="Phytozome:GSVIVT01031286001" /db_xref="TAIR:AT5G02270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZ98" /translation="MAVESSKPTVEINGLRFTYPGIDGHPPPGSAPLIDDFSLTLNAG NRCLLVGSNGAGKTTILKIMGGKHMVEPHMVRVLGRSAFHDTVLASSGELCYLGGEWR RDVAFAGFEVPIQMDISAEKMIFGVAGIDPKRRAELIKVLDIDLSWRMHKVSDGQRRR VQICMGLLKPFKVLLLDEITVDLDVLARADLLHFLRKECEERGATIIYATHIFDGLEK WPSHIVYVAHGKLQLAMPMDEVKEISNLSLMRTVESWLRKERDEERQKRKERKAHGLP EFENQIEGSRVTGDPARAAVRALNNGWAAGRLHSTVAGEENFLFSSNRVLRQ" gene 1810177..1812158 /locus_tag="TCM_021929" /note="dbxref CacaoGD:Thecc1EG021929" mRNA join(1810177..1810340,1810415..1810583,1811709..1812158) /locus_tag="TCM_021929" /product="SNARE-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0009s07410.1" /inference="similar to AA sequence:Phytozome:GSVIVT01031287001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g13984t00001" CDS join(1810281..1810340,1810415..1810583,1811709..1811905) /locus_tag="TCM_021929" /codon_start=1 /product="SNARE-like superfamily protein" /protein_id="EOY07516.1" /db_xref="Phytozome:GSVIVT01031287001" /db_xref="TAIR:AT5G02280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C1DZS5" /translation="MAAIYSLYIINKSGGLIFYKDYGSKGRMDTNDSLRVASLWHSMH AISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEALLKAIYELY TDYVLKNPFYEMEMPIRCELFDINLTQAIQKDRVVLLGR" gene complement(1814531..1817619) /locus_tag="TCM_021930" /note="dbxref CacaoGD:Thecc1EG021930" mRNA complement(join(1814531..1815209,1815719..1815842, 1815955..1816097,1816172..1816307,1816740..1817065, 1817374..1817619)) /locus_tag="TCM_021930" /product="Kinase superfamily protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041829t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s11410.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06411t00001" CDS complement(join(1814794..1815209,1815719..1815842, 1815955..1816097,1816172..1816307,1816740..1817065, 1817374..1817425)) /locus_tag="TCM_021930" /note="paralog of Thecc1EG041829t1" /codon_start=1 /product="Kinase superfamily protein" /protein_id="EOY07517.1" /db_xref="Phytozome:POPTR_0016s11410.1" /db_xref="TAIR:AT5G02290.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10BD9" /translation="MGACWSNRIKSVSPSTTGVNSTSASRNGNNLSGSSSRVSSASVP QAPRSEGEILQSSNLKVFTFSELRTATRNFRPDSVLGEGGFGSVFKGWIDEHSLTATK PGTGIVIAAKRLKQEGFQGHKEWLAEINYLGQLHHPNLVKLIGYCLEDEHRLLVYEFM ARGSMENHLFRRGSHFPPLSWGIRMKVALGAGKGLAFLHNAKPQVIYRDFKTSNILLH SNYNAKLSDFGLARDGPTGDKSHVSTRVMGTYGYAAPEYLATGHLTAKSDIYSFGVVL LEMLSGRRAIDKNRPQGEHNLVEWAKPYLTNKRRIFRVLDTRLQGQYSLNRVQKVANL ALQCLAVEPKFRPSMDEVVTELEQFQEPGDMPKSVQKEHHVKVQSHSNGKPTTFPKPS ASPLRV" gene complement(1819376..1825414) /locus_tag="TCM_021931" /note="dbxref CacaoGD:Thecc1EG021931" mRNA complement(join(1819376..1819721,1822452..1822602, 1822955..1823686,1824726..1825414)) /locus_tag="TCM_021931" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.69 coverage" mobile_element complement(1820952..1821352) /note="source:MITE_PIF_Tourist_6 1 418" /mobile_element_type="transposon:TIR/MITE" mobile_element 1821179..1821415 /note="source:CACAO_MITE43_scaffold_3 646 830" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(1821432..1822335) /note="source:scaffold_4_CACTA_0506 2691 3579" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(1823494..1823686,1824726..1824916)) /locus_tag="TCM_021931" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07518.1" /translation="MERIFPEGGIIEGRRGMPRRIVGPRLRGPGRGDCSPRFAAQGDE SDVDSTFCCAQKRLSDVSDKLFHQDPKHTYTGNCWAKTGNKSRKGYLWNHKADLTCQT CCKIEGDPPLIFFTMNPTAPCSPRR" gene 1825859..1830013 /locus_tag="TCM_021932" /note="dbxref CacaoGD:Thecc1EG021932" mRNA join(1825859..1826191,1827922..1828035,1828258..1829433) /locus_tag="TCM_021932" /product="Myb-like HTH transcriptional regulator family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29767.m000199" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019507t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s08610.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1151t1" mRNA join(1826162..1826191,1827935..1828035,1828258..1830013) /locus_tag="TCM_021932" /product="Myb-like HTH transcriptional regulator family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29767.m000199" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019507t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s08610.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1151t4; alternateUTRof:Thecc1EG021932t1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1151t1" CDS 1828308..1829381 /locus_tag="TCM_021932" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG019507t1" /codon_start=1 /product="Myb-like HTH transcriptional regulator family protein isoform 1" /protein_id="EOY07519.1" /db_xref="Phytozome:POPTR_0006s08610.1" /db_xref="TAIR:AT2G37630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HBM2" /translation="MKERQRWRAEEDALLHAYVKQYGPREWNLVSQRMNTPLNRDAKS CLERWNNYLKPGIKKGSLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEV FKEKQLREQKEKNKTVDPIEEGKYDRILETFAEKLVKERHSSAFSMATSNGGFLHTDP PSPAPTLLPPWLSNSSTAPAVRPPSPSVTLTLSPSTVTAAPPIPWLQPERMSENTPVV LGNMVPYGSIPPCGENPLVSELVECCRELEEGQRAWVAHKKEAAWRLRRVELQLESEK ACRRREKMEEIESKVKALREEQKATLDRIEAEYREQLEGLRRDAEAKEQKLAEQWAAK HLRLTKFLEQMGCRPRLTEPNGR" CDS 1828308..1829381 /locus_tag="TCM_021932" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG019507t1" /codon_start=1 /product="Myb-like HTH transcriptional regulator family protein isoform 1" /protein_id="EOY07520.1" /db_xref="Phytozome:POPTR_0006s08610.1" /db_xref="TAIR:AT2G37630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HBM2" /translation="MKERQRWRAEEDALLHAYVKQYGPREWNLVSQRMNTPLNRDAKS CLERWNNYLKPGIKKGSLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEV FKEKQLREQKEKNKTVDPIEEGKYDRILETFAEKLVKERHSSAFSMATSNGGFLHTDP PSPAPTLLPPWLSNSSTAPAVRPPSPSVTLTLSPSTVTAAPPIPWLQPERMSENTPVV LGNMVPYGSIPPCGENPLVSELVECCRELEEGQRAWVAHKKEAAWRLRRVELQLESEK ACRRREKMEEIESKVKALREEQKATLDRIEAEYREQLEGLRRDAEAKEQKLAEQWAAK HLRLTKFLEQMGCRPRLTEPNGR" mobile_element complement(1836945..1837018) /note="source:CACAO_M_S_E89710_F231_scaffold_8 1144 1218" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(1837028..1842150) /locus_tag="TCM_021933" /note="dbxref CacaoGD:Thecc1EG021933" mRNA complement(join(1837028..1837586,1838194..1838361, 1838519..1838788,1841367..1842150)) /locus_tag="TCM_021933" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS complement(join(1837341..1837586,1838194..1838361, 1838519..1838788,1841367..1842017)) /locus_tag="TCM_021933" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07521.1" /translation="MVDIDGPTLRKESDKEKDEGNLEKDGAQQTKTVDTGVSTLGKKF DKGKAEKNQESGDARMTKMVDSGDSTSIKESDKDKAEENLESDGAQQITKMVDTDDST LGKGSDKEKTEENLESDGARQPKVTDTDNSTPQKESDKGKAIENPKSDGAQQPKINET ATHGIVIEAEPLAWKPPADQVVIKPAYIEGQRCGLPEGWYVEQRPRTTPKYIGKIDQF YYEPGTRKQFRSLKAVLRHLQVTGQQHEQQAQAGQENNEQSTMQQHEQLAQVGQENDE QTTKEQYELLARASQENDKQVTRQQDKHTSEVSKSSKGKILKNKRGRKKKQAASGYEF DHANPLEKITLVLNTDVENDRCQHGEQFEALKSSKGKISKNKCGRKKKQPASTSASGF EFDYANPPKKVTWTLNTNVENDRWIPSIGETMAPEAVKDLWAETFVSLTKKN" mobile_element complement(1838341..1838446) /note="source:CACAO_M_E12463_F12_scaffold_3 4556 4610" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 1842957..1857599 /locus_tag="TCM_021934" /note="dbxref CacaoGD:Thecc1EG021934" mRNA join(1842957..1843882,1844042..1845154,1846153..1847363, 1847478..1847618,1848286..1848529,1848622..1849344, 1850042..1850233,1850333..1850991,1852041..1852092, 1852178..1852817,1853291..1853496,1853844..1854379, 1854466..1854570,1854701..1854767,1854847..1854924, 1856010..1856078,1856188..1856279,1856375..1856560, 1856742..1857599) /locus_tag="TCM_021934" /product="Ubiquitin ligase E3 alpha, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29846.m000182" /inference="similar to AA sequence:ricco:29846.m000182" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc5t8; alternateUTRof:Thecc1EG021934t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc5t12" mRNA join(1842957..1843882,1844042..1845154,1846153..1847363, 1847478..1847618,1848286..1848529,1848622..1849344, 1850042..1850233,1850333..1850991,1852041..1852092, 1852178..1852817,1853291..1853496,1853844..1854379, 1854466..1854570,1854701..1854767,1854847..1854924, 1856010..1856078,1856188..1856279,1856375..1856534, 1856742..1857599) /locus_tag="TCM_021934" /product="Ubiquitin ligase E3 alpha, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29846.m000182" /inference="similar to AA sequence:ricco:29846.m000182" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc5t12; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc5t12" CDS join(1843829..1843882,1844042..1845154,1846153..1847363, 1847478..1847618,1848286..1848529,1848622..1849344, 1850042..1850233,1850333..1850991,1852041..1852092, 1852178..1852817,1853291..1853496,1853844..1854379, 1854466..1854570,1854701..1854767,1854847..1854924, 1856010..1856078,1856188..1856262) /locus_tag="TCM_021934" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29846.m000182" /codon_start=1 /product="Ubiquitin ligase E3 alpha, putative isoform 1" /protein_id="EOY07522.1" /db_xref="TAIR:AT5G02310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T256" /translation="MESPSDSSPLKPRDRILRRLAALGIPVEYLERRYEGIVDFVMAN GLLLPNVVSAILPTDEEVAQSIQDPRLRSKKWMGLTMISRFRDSMVWLQWLMFEGDPV DALKSLAKLSIGQRGVCGAVWGSNDIAYRCRTCEHDPTCAICVPCFQNGNHKDHDYSI IYTGGGCCDCGDETAWKREGFCSKHKGAEQIQPLPENLVNSVGPVLDALFVCWKNKLF SAESIFLENIRANDPGAEQRKIANELTYVVVEMLLEFCKYSESLLSFVSRRVISLDGL LGILVRAERFLSDSVVKKLHELLLKLLGEPVFKFEFSKVFLSYYPTVINEVIKEGNDK VLSTKFPLLSTFSVQIFTVPTLTPRLVKEMNLLGMLLGCLEEIFVSCAREDGHLQAAK WGSLYDTTNRVVGDIRFVMSHNIVSKYATHEQQDISRTWLKLLAFVQGMNPIKRETGL RIEEENESMHLLFVLGHSIANIHSLLVDGAVATSELANVLSYTYKQDMDDGDSMRHAK VGRLSQESSVCSVTGRTASKVTEVGSGSVSHLFVPSSVIWLIRECLRAMETWLEVDDR ISAAFQSINSPNSSGNSDSNFLAIKKTLYKIRKGKYFGKPTSSSENHSSQSSSSLYSG HQASDDMEIVKNLGSDGNPTFPAEISSVACGSMCLDVNAMETDIGTGLSTLRVSEWPD IIYDVSSQEISVHIPLHRLLSLLLQKALRMCYGESVVPNVRNPYSTSSLSAIYADFFG HILESFHPFGFSACVMEHPLRIRVFCAQVIAGMWRKNGDAALVSCEWYRSVRWSEQGL ELDLFLLQCCAALAPPDLFVKRIVERFGLLNYLSLSLERSNEYEPVLVQEMLTLIMQI LQERRFCGRNTADSLKRELIYKLAIGDATHSQLVKSLPRDLSKFDQLQEILDRVAVYC NPSGFNQGMYSLRWAYWKELDLYHPRWNPRDLQVAEERYLRFCGVSAMTTQLPRWTKI YPPLEGVSRIATCRVTFQIIRAVLFYAVFTDKFTESRAPDGILWTALHLLSLTLDICL QQNGSSSAECYIGDLNCMLAFAVEEISESLNFGAGKQSLLSLLVALMRMHRQENQSNY LESSNCSFSPLIESILKKFAEVDSQCMTKLQQLAPEVICHISQTTPYSDTNRSVSASD SEMRKAKARERQAAILAKMKAEQSKFLTSITSTADDDPKSESEMSNSDAEHETEGAVQ ESCSLCHDPTSKNPVSFLILLQKSRLLSFVDRGPPSWDRWSDKEQGYSLTNRSDQPRS NASSSSSGLASQSVQLTDNAVVGSANDGQGQRREVNVILDFVKSRFPLVRAIQAPSTS SDVKVLETLEEDMYVRIRKEMCDTFLSSSIKEDEVSSAAECSPESSRDAESVFLRKYI AAISKETSENSLGFENTNGDREMTESTSQPLVYDGFGPLDCDGIYLSSCGHAVHQGCL DRYLSSLKERYVRRSFFEGAHIVDPDQGEFLCPVCRRLANSVLPAVHGNLQKAGRQPM TSSVDPLPALCPSSASKEESYSLLLQQGLSLLKTAAKVVGRPDIFEALSLQRKESKSR NLEPISRVLSKMYFSKKQDRLLRSPRLSHPIILWDTLKYSLMSTEIAARSGRTSMTTN YTLTSLYKEFKSSSEFIFSLLLRVVQNLSSTNSLHALQRFRGLQLFAESICSRVSPDY HSSRHKQEGNLGILKHDDKEAIHPDIQFWNRASDPVLARDPFSSLMWVLFCLPCPFIS CDESLLSLVHIFYVVSMVQAVITCCGRHGYNINELDSHDCLITDICGILGGSDCARWY FVSKDANHSCDIKDMIRRLSFPYLRRCALLWKLLKSSAEAPFCDRDNVWESSQVTTDV MDTTESASVELNEVQELEKMFKIPPIDVVLKDEVSRSIALKWFHHFHKVYEACSFQNV FYCNPAVPFKLMSLPHVYQDLLQRYIKQCCPDCEAVLEDPALCLLCGRLCSPSWKPCC RDSGCMAHAMVCGAGIGVFLLIRRTTILLQRCARQAPWPSPYLDAFGEEDSEMHRGKP LYLNEERYAALTYMVASHGLDRSSKVLSQITVGSFFMV" CDS join(1843829..1843882,1844042..1845154,1846153..1847363, 1847478..1847618,1848286..1848529,1848622..1849344, 1850042..1850233,1850333..1850991,1852041..1852092, 1852178..1852817,1853291..1853496,1853844..1854379, 1854466..1854570,1854701..1854767,1854847..1854924, 1856010..1856078,1856188..1856262) /locus_tag="TCM_021934" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29846.m000182" /codon_start=1 /product="Ubiquitin ligase E3 alpha, putative isoform 1" /protein_id="EOY07523.1" /db_xref="TAIR:AT5G02310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T256" /translation="MESPSDSSPLKPRDRILRRLAALGIPVEYLERRYEGIVDFVMAN GLLLPNVVSAILPTDEEVAQSIQDPRLRSKKWMGLTMISRFRDSMVWLQWLMFEGDPV DALKSLAKLSIGQRGVCGAVWGSNDIAYRCRTCEHDPTCAICVPCFQNGNHKDHDYSI IYTGGGCCDCGDETAWKREGFCSKHKGAEQIQPLPENLVNSVGPVLDALFVCWKNKLF SAESIFLENIRANDPGAEQRKIANELTYVVVEMLLEFCKYSESLLSFVSRRVISLDGL LGILVRAERFLSDSVVKKLHELLLKLLGEPVFKFEFSKVFLSYYPTVINEVIKEGNDK VLSTKFPLLSTFSVQIFTVPTLTPRLVKEMNLLGMLLGCLEEIFVSCAREDGHLQAAK WGSLYDTTNRVVGDIRFVMSHNIVSKYATHEQQDISRTWLKLLAFVQGMNPIKRETGL RIEEENESMHLLFVLGHSIANIHSLLVDGAVATSELANVLSYTYKQDMDDGDSMRHAK VGRLSQESSVCSVTGRTASKVTEVGSGSVSHLFVPSSVIWLIRECLRAMETWLEVDDR ISAAFQSINSPNSSGNSDSNFLAIKKTLYKIRKGKYFGKPTSSSENHSSQSSSSLYSG HQASDDMEIVKNLGSDGNPTFPAEISSVACGSMCLDVNAMETDIGTGLSTLRVSEWPD IIYDVSSQEISVHIPLHRLLSLLLQKALRMCYGESVVPNVRNPYSTSSLSAIYADFFG HILESFHPFGFSACVMEHPLRIRVFCAQVIAGMWRKNGDAALVSCEWYRSVRWSEQGL ELDLFLLQCCAALAPPDLFVKRIVERFGLLNYLSLSLERSNEYEPVLVQEMLTLIMQI LQERRFCGRNTADSLKRELIYKLAIGDATHSQLVKSLPRDLSKFDQLQEILDRVAVYC NPSGFNQGMYSLRWAYWKELDLYHPRWNPRDLQVAEERYLRFCGVSAMTTQLPRWTKI YPPLEGVSRIATCRVTFQIIRAVLFYAVFTDKFTESRAPDGILWTALHLLSLTLDICL QQNGSSSAECYIGDLNCMLAFAVEEISESLNFGAGKQSLLSLLVALMRMHRQENQSNY LESSNCSFSPLIESILKKFAEVDSQCMTKLQQLAPEVICHISQTTPYSDTNRSVSASD SEMRKAKARERQAAILAKMKAEQSKFLTSITSTADDDPKSESEMSNSDAEHETEGAVQ ESCSLCHDPTSKNPVSFLILLQKSRLLSFVDRGPPSWDRWSDKEQGYSLTNRSDQPRS NASSSSSGLASQSVQLTDNAVVGSANDGQGQRREVNVILDFVKSRFPLVRAIQAPSTS SDVKVLETLEEDMYVRIRKEMCDTFLSSSIKEDEVSSAAECSPESSRDAESVFLRKYI AAISKETSENSLGFENTNGDREMTESTSQPLVYDGFGPLDCDGIYLSSCGHAVHQGCL DRYLSSLKERYVRRSFFEGAHIVDPDQGEFLCPVCRRLANSVLPAVHGNLQKAGRQPM TSSVDPLPALCPSSASKEESYSLLLQQGLSLLKTAAKVVGRPDIFEALSLQRKESKSR NLEPISRVLSKMYFSKKQDRLLRSPRLSHPIILWDTLKYSLMSTEIAARSGRTSMTTN YTLTSLYKEFKSSSEFIFSLLLRVVQNLSSTNSLHALQRFRGLQLFAESICSRVSPDY HSSRHKQEGNLGILKHDDKEAIHPDIQFWNRASDPVLARDPFSSLMWVLFCLPCPFIS CDESLLSLVHIFYVVSMVQAVITCCGRHGYNINELDSHDCLITDICGILGGSDCARWY FVSKDANHSCDIKDMIRRLSFPYLRRCALLWKLLKSSAEAPFCDRDNVWESSQVTTDV MDTTESASVELNEVQELEKMFKIPPIDVVLKDEVSRSIALKWFHHFHKVYEACSFQNV FYCNPAVPFKLMSLPHVYQDLLQRYIKQCCPDCEAVLEDPALCLLCGRLCSPSWKPCC RDSGCMAHAMVCGAGIGVFLLIRRTTILLQRCARQAPWPSPYLDAFGEEDSEMHRGKP LYLNEERYAALTYMVASHGLDRSSKVLSQITVGSFFMV" mobile_element complement(1858038..1858226) /note="source:scaffold_7_CACTA_0795 2864 3054" /mobile_element_type="transposon:TIR/CACTA" gene complement(1858371..1862909) /locus_tag="TCM_021936" /note="dbxref CacaoGD:Thecc1EG021936" mRNA complement(join(1858371..1858893,1859267..1860363, 1860526..1860654,1860938..1861041,1861135..1861229, 1861497..1861554,1861799..1861850,1862188..1862384, 1862781..1862909)) /locus_tag="TCM_021936" /product="Myb3r3, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29846.m000184" /inference="similar to AA sequence:ricco:29846.m000184" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1024t7; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1024t7" mRNA complement(join(1858371..1858893,1859267..1860363, 1860526..1860654,1860938..1861041,1861135..1861229, 1861497..1861554,1861799..1861850,1862188..1862340, 1862781..1862806)) /locus_tag="TCM_021936" /product="Myb3r3, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29846.m000184" /inference="similar to AA sequence:ricco:29846.m000184" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1024t3; alternateUTRof:Thecc1EG021936t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1024t7" mRNA complement(join(1858371..1858893,1859267..1860363, 1860526..1860654,1860938..1861041,1861135..1861229, 1861497..1861554,1861799..1861850,1862179..>1862212)) /locus_tag="TCM_021936" /product="Myb3r3, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:29846.m000184" /inference="similar to AA sequence:ricco:29846.m000184" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1024t4; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1024t7" CDS complement(join(1859277..1860363,1860526..1860654, 1860938..1861041,1861135..1861229,1861497..1861554, 1861799..1861850,1862188..1862333)) /locus_tag="TCM_021936" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29846.m000184" /codon_start=1 /product="Myb3r3, putative isoform 1" /protein_id="EOY07524.1" /db_xref="TAIR:AT5G02320.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T258" /translation="MAELTMEERCIENKQLTTASSSSVSEGGGGVVVKSPGISSPAPS SPNHRRTTGPIRRAKGGWTPEEDETLRNAVAAFKGKSWKKIAEFFPDRSEVQCLHRWQ KVLNPDLVKGPWTQEEDDKIIELVSRYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPD IKKDAWILEEELALMNAHRIYGNKWAEIAKVLPGRTDNAIKNHWNSSLKKKLDFYLAT GKLPPVGKNGLQNGAKDMNSPAATKSLLVCSKKESDSTAQTSSGTTDICKPEEDGKDQ LESSAPVQDMAASSSVIPNESADTESAEGKPPSFDANPCCCNSEPGAKFESRGISSAI VEDKVVETQVWRDSPTYGSLCYEPPRLQGVTSLDSDNLNKKGMRPEWTSSPITSPISF FTPPSVKGSGLSAHSPEYILRFAAKSFPNTPSIFRKRKTGAQSLTLPKMGRMNEETVK NRIQLSGEQERTENSLEQAPLHDGSSCESPACQGNSSVGPKCTAFNASPPYRLRSKRT AVFKSVERQLEFTFDKERHEDNTKSSDLSMNGTSPIEDCLNATKMGVT" CDS complement(join(1859277..1860363,1860526..1860654, 1860938..1861041,1861135..1861229,1861497..1861554, 1861799..1861850,1862188..1862333)) /locus_tag="TCM_021936" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29846.m000184" /codon_start=1 /product="Myb3r3, putative isoform 1" /protein_id="EOY07525.1" /db_xref="TAIR:AT5G02320.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T258" /translation="MAELTMEERCIENKQLTTASSSSVSEGGGGVVVKSPGISSPAPS SPNHRRTTGPIRRAKGGWTPEEDETLRNAVAAFKGKSWKKIAEFFPDRSEVQCLHRWQ KVLNPDLVKGPWTQEEDDKIIELVSRYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPD IKKDAWILEEELALMNAHRIYGNKWAEIAKVLPGRTDNAIKNHWNSSLKKKLDFYLAT GKLPPVGKNGLQNGAKDMNSPAATKSLLVCSKKESDSTAQTSSGTTDICKPEEDGKDQ LESSAPVQDMAASSSVIPNESADTESAEGKPPSFDANPCCCNSEPGAKFESRGISSAI VEDKVVETQVWRDSPTYGSLCYEPPRLQGVTSLDSDNLNKKGMRPEWTSSPITSPISF FTPPSVKGSGLSAHSPEYILRFAAKSFPNTPSIFRKRKTGAQSLTLPKMGRMNEETVK NRIQLSGEQERTENSLEQAPLHDGSSCESPACQGNSSVGPKCTAFNASPPYRLRSKRT AVFKSVERQLEFTFDKERHEDNTKSSDLSMNGTSPIEDCLNATKMGVT" CDS complement(join(1859277..1860363,1860526..1860654, 1860938..1861041,1861135..1861229,1861497..1861554, 1861799..1861850,1862179..>1862210)) /locus_tag="TCM_021936" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29846.m000184" /codon_start=1 /product="Myb3r3, putative isoform 3" /protein_id="EOY07526.1" /db_xref="TAIR:AT5G02320.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T258" /translation="APSSPNHRYCQRTTGPIRRAKGGWTPEEDETLRNAVAAFKGKSW KKIAEFFPDRSEVQCLHRWQKVLNPDLVKGPWTQEEDDKIIELVSRYGPTKWSVIAKS LPGRIGKQCRERWHNHLNPDIKKDAWILEEELALMNAHRIYGNKWAEIAKVLPGRTDN AIKNHWNSSLKKKLDFYLATGKLPPVGKNGLQNGAKDMNSPAATKSLLVCSKKESDST AQTSSGTTDICKPEEDGKDQLESSAPVQDMAASSSVIPNESADTESAEGKPPSFDANP CCCNSEPGAKFESRGISSAIVEDKVVETQVWRDSPTYGSLCYEPPRLQGVTSLDSDNL NKKGMRPEWTSSPITSPISFFTPPSVKGSGLSAHSPEYILRFAAKSFPNTPSIFRKRK TGAQSLTLPKMGRMNEETVKNRIQLSGEQERTENSLEQAPLHDGSSCESPACQGNSSV GPKCTAFNASPPYRLRSKRTAVFKSVERQLEFTFDKERHEDNTKSSDLSMNGTSPIED CLNATKMGVT" gene 1864841..1869291 /locus_tag="TCM_021937" /note="dbxref CacaoGD:Thecc1EG021937" mRNA join(1864841..1865165,1865276..1865444,1865783..1866176, 1866268..1866473,1866582..1866889,1866973..1867036, 1867155..1867242,1867370..1867614,1867695..1867741, 1867858..1867879,1867973..1868035,1868137..1868175, 1868262..1869291) /locus_tag="TCM_021937" /product="ATP binding microtubule motor family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034173001" /inference="similar to AA sequence:Phytozome:GSVIVT01034173001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13203t2" CDS join(1864966..1865165,1865276..1865444,1865783..1866176, 1866268..1866473,1866582..1866889,1866973..1867036, 1867155..1867242,1867370..1867614,1867695..1867741, 1867858..1867879,1867973..1868035,1868137..1868175, 1868262..1868342) /locus_tag="TCM_021937" /codon_start=1 /product="ATP binding microtubule motor family protein" /protein_id="EOY07527.1" /db_xref="Phytozome:GSVIVT01034173001" /db_xref="TAIR:AT5G02370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5E913" /translation="METQGVKLCTPSKQAIVSKVRVVVRVRPFLPQEIAARNGNSKSC VFLLDNQDSSDEVAVHLKDPNTSRNECYRLDSFFDQEDDNVRRIFYREVNSLIPGIFH GFNATVFAYGATGSGKTYTMQGTKELPGLMPLAMSTILSICQSTGCIAEISYYEVYMD RCYDLLEVKTKEISILDDKDGQIHLRGLSRIPINSMSEFHEVFSCGIQRRKVAHTGLN DVSSRSHGVLVIAVSTPCDDGSGPVTMGKLNLIDLAGNEDNRRTCNEGIRLQESAKIN QSLFALSNVIYALNNNKPRVPYRESKLTRILQDSLGGTSRALMVACLNPGEYQESVHT VSLAARSRHISNVVSSAQKLETPKDKVDMEAKLQAWLESKGKTKSAQRMGLFSSRFIG KTPSSVSSAKKLNNNSSCKVKATAKEGASNAKDRGLFVTSRNLFNNEGVVNPNLEGAH LSAKGNKEEKKADVDEIMLESTMDLAEEPPSKEERKTAMQSPLRKVLSPINSIINPGS LKEQSCKDQFFALSYEPNTPKTPSMASATNKFQDVGTPIDKFNAWSSNIKSSLIQEFI EFLNTASREELQGLKGIGSKMTEYILELRVTSPLKSLSDLEKIGLSSKQVYNLFSKAV KGIFNRPEIATPGPSCS" gene complement(1869365..1870154) /locus_tag="TCM_021938" /note="dbxref CacaoGD:Thecc1EG021938" mRNA complement(join(1869365..1869579,1869674..1869754, 1870004..1870154)) /locus_tag="TCM_021938" /product="Metallothionein 2A, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034174001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00002c00030" CDS complement(join(1869477..1869579,1869674..1869754, 1870004..1870068)) /locus_tag="TCM_021938" /codon_start=1 /product="Metallothionein 2A, putative" /protein_id="EOY07528.1" /translation="MSCCGGNCGCGTGCKCGSGCGGCKMNPDISFAEKTTTETLVLGV APQKVHFEGAEVGFGAESGCDNGCKCGDNCTCNPCTCK" mobile_element 1871035..1871135 /note="source:CACAO_PIF_E465_scaffold_115 270 372" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(1871248..1871318) /note="source:scaffold_8_CACTA_0858 14669 14734" /mobile_element_type="transposon:TIR/CACTA" gene 1871279..1874780 /locus_tag="TCM_021939" /note="dbxref CacaoGD:Thecc1EG021939" mRNA join(1871279..1871715,1873985..1874336,1874606..1874780) /locus_tag="TCM_021939" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.35 coverage" CDS join(1871600..1871715,1873985..1874225) /locus_tag="TCM_021939" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07529.1" /translation="MYSQIQPDLWPHSSALESTKSGAPLGSQGRLDLLLIWKELLSSP PLLLAHASLFLRLTPCACFQHEYLQAPYLFSVHAIRRVQRFQLAANPIKEVKANKLFE TNKHVKTGSSGTKLLK" mobile_element complement(1872632..1872754) /note="source:scaffold_8_CACTA_0858 14591 14733" /mobile_element_type="transposon:TIR/CACTA" mobile_element 1872769..1872984 /note="source:INTACT383F_F354_scaffold_3-int 2389 2607" /mobile_element_type="retrotransposon:LTR/Unclassified" gene complement(1874988..1879684) /locus_tag="TCM_021940" /note="dbxref CacaoGD:Thecc1EG021940" mRNA complement(join(1874988..1876125,1876276..1878055, 1878302..1878387,1878685..1878922,1879392..1879684)) /locus_tag="TCM_021940" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s11080.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s11080.2" /note="quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2728t3" CDS complement(join(1875443..1876125,1876276..1878055, 1878302..1878387,1878685..1878850)) /locus_tag="TCM_021940" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07530.1" /db_xref="Phytozome:POPTR_0016s11080.2" /db_xref="TAIR:AT5G02390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HLC6" /translation="MGKHMRHKSAGNPFPHGHPGCMWRMLQVLNYQHWHWRVIKRRLT YKKHEGRKSDAVAENPGDDAQASTADDSSKRRKAEGANSKVEGKKRQSSPASKSSVKS RLKALITEEMSKRKGRGRHRRSSTCPAGSQLTGTGSDLLAEAHTDDPLPEIALNDESP RVGDENKEISSDSSSEDQVLPKSSEEPCTSDENGEECGIMFSGNDSSHEQVDESEKLS IEKAIFCHDLNDRKQAFLKQKSVSSKELTKDGSAHQSKYFTDARDIINMNKGFLLTIL QDPGSPLAHYFHKQQAISAKMGITKSGTFPSHGSSSRRGSGPRKQNHVRDGQKPPDHE STEDICRKSMPLKAADHRADGIHQLNQANAEVPDMTTSGSSSNHLKQKSDGNQVAKKR FKHLKQKIKHAIRESKKERHRIAMDAVLHKIPHKKGFSKDLTKDIVDYFKNPSRIRDV FSESSTSKRRIQHERRASSFNESMDRYTQLYESSFNREAKEHISKRIQERREEEMVLP RRSAPKSLGRILSSPELHSYFYQSEDSSDAFSSDMPTTVADSTLSISSSTEQNNLDVS AALDYHSQLGTLGKSESQENLTGIRETLSVSSDQLASNSSTHSKTIAQVGKTSDELGN LIIGDIVSQSEQDSKPEIVVPITKLAEPSPIPLLNFNLEGKTASTPAEISKSQEAGLE LTQSHGFPTRLDILADEEHEFKDFPKVAEGRAKFEKVETLKKDLDSDFLKDRLDTKDK DKFKYVRDVLELSGFSGDEALGTWYADDQPVDPFVYEEVKGCIFCEPVCSRDEVGGFC NHPLLFDLINEVLMELYERSYSYCPRPLSSLCHIHPMPLGHHVLEEVWTNISWYLSFE TGFDKPLDYVASKDLTRSDGWMNLQAENECLGLELEEVIFYDLLDELF" gene 1881849..1884677 /locus_tag="TCM_021941" /note="dbxref CacaoGD:Thecc1EG021941" mRNA join(1881849..1883233,1883324..1883437,1883711..1883975, 1884083..1884677) /locus_tag="TCM_021941" /product="Poltergeist like 4, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma18g39640.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041847t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s24620.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.11 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc4547t1" CDS join(1881962..1883233,1883324..1883437,1883711..1883975, 1884083..1884213) /locus_tag="TCM_021941" /note="paralog of Thecc1EG041847t1" /codon_start=1 /product="Poltergeist like 4, putative" /protein_id="EOY07531.1" /db_xref="Phytozome:POPTR_0001s24620.1" /db_xref="TAIR:AT2G28890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZV25" /translation="MGNSVRKLSHCCSCNGESHEMTTHIMPHPTQDFVGHSFCYVRPD PARLSSKVHSLNDCSSSTATKATTFCSISGASVGANITTVPLASSPLPDRSSTFESSE LFASLTLQPVPRGSSHCWSGPMERGFLSGPIDKFQRSLSHGSFNSKKKSLSLMKSFKR AISNKMLKASVSDKELSSDTERSNENFLVKTNPSSRGSLSVDDHGDQNDDDDDGDDGD QFSMKSQNLQWAQGKAGEDRTHLVVSEEDGWIFVGIYDGFSGPDAPDHLLSNLFNAVF EELKGLLWNDGKAESDEASGLDSFEGKENSGKSLKKWKWEWDSERLELSTNSMESVDH SDVLKALSEALSKTEEAYLKVADLKPELHVMGSCVLVALLNGEDVYLMNVGDSRAILA QKAGSMTKPEIETPFNLISLQLTMDHNADVEEEVERIRKEHPDDDEAVVNERVKGYLK VTRAFGAGFLKQPKWNDALYEIFRINYVGTSPYISSSPSLYHYKLSPDDRFLILSSDG LYQYFTNQQVVSEVEWFTASFPDGDPAQHLVEEVLIRAAKKAGLEFHELVEIPPGERR MYHDDVSVIIISLEGRIWRSSVNRNTS" mobile_element complement(1884866..1885264) /note="source:CACAO_MITE139_scaffold_9 2 419" /mobile_element_type="transposon:TIR/MITE" gene complement(1886136..1890244) /locus_tag="TCM_021942" /note="dbxref CacaoGD:Thecc1EG021942" mRNA complement(join(1886136..1886857,1887130..1887266, 1887426..1887531,1887661..1887738,1887892..1887945, 1888189..1888249,1888927..1889051,1889188..1889277, 1889383..1889462,1889569..1889698,1889797..1889879, 1889984..1890244)) /locus_tag="TCM_021942" /product="Pectinacetylesterase family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29846.m000189" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004967t1" /inference="similar to AA sequence:ricco:29846.m000189" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00808t00004" mRNA complement(join(1886136..1887266,1887426..1887531, 1887661..1887738,1887892..1887945,1888189..1888249, 1888927..1889051,1889188..1889277,1889383..1889462, 1889569..1889698,1889797..1889879,1889984..1890244)) /locus_tag="TCM_021942" /product="Pectinacetylesterase family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29846.m000189" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004967t1" /inference="similar to AA sequence:ricco:29846.m000189" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:PASA:2:TSA:puevd3b021239t1a2; inference alignment:Newbler:10:TSA:cgbaL_g00808t00004" mRNA complement(join(1886221..1886849,1887489..1887531, 1887661..1887738,1887892..1887945,1888189..1888249, 1888927..1889051,1889188..1889277,1889383..1889462, 1889569..1889698,1889797..1889879,1889984..>1890165)) /locus_tag="TCM_021942" /product="Pectinacetylesterase family protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:29846.m000189" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004967t1" /inference="similar to AA sequence:frave:gene18404" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc299t13; inference alignment:Newbler:10:TSA:cgbaL_g00808t00004" CDS complement(join(1886741..1886857,1887130..1887266, 1887426..1887531,1887661..1887738,1887892..1887945, 1888189..1888249,1888927..1889051,1889188..1889277, 1889383..1889462,1889569..1889698,1889797..1889879, 1889984..1890179)) /locus_tag="TCM_021942" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29846.m000189; paralog of Thecc1EG004967t1" /codon_start=1 /product="Pectinacetylesterase family protein isoform 1" /protein_id="EOY07532.1" /db_xref="TAIR:AT3G09410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SR22" /translation="MANPRIRTLTWWRKWAKRDWAIAAVGFTIILFALTLLFDSRNPD LNSTDDLVPLTFLHRAKATGAFCLDGSLPAYHFQKGFGSGSNSWVLHIEGGGWCNSIE SCNYRKRTALGSSNYMDQLVQFSGILSRHPSQNPDFYNWNKVKIRYCDGASLAGHPES EFKNGTKLFFRGQLIWEAFTDELLSLGLSNAKQALLSGCSAGGLATLIHCDDFRDHLP KDATVKCLADAGFFLDEPDILGQRTMRAFYHDVVQLQGTAKSLHKNCVGRMEPSKCFF PQEIVKNVRTPLFIVNPAYDFWQIQHILVPDASDPHGYWSRCRLNIQNCNSSQIETLQ GFRNSLLKALSELQQNEEVGMFINSCFIHCQTLMAETWHSPRINNKTIAESVGDWYFN RKVLKQIDCPYPCNPTCYNMDFTRGL" mRNA complement(join(1886824..1887531,1887661..1887738, 1887892..1887945,1888189..1888249,1888927..1889051, 1889188..1889277,1889383..1889462,1889569..1889698, 1889797..1889879,1889984..>1890165)) /locus_tag="TCM_021942" /product="Pectinacetylesterase family protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:29846.m000189" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004967t1" /inference="similar to AA sequence:frave:gene18404" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc299t11; inference alignment:Newbler:10:TSA:cgbaL_g00808t00004" CDS complement(join(1886848..1886849,1887489..1887531, 1887661..1887738,1887892..1887945,1888189..1888249, 1888927..1889051,1889188..1889277,1889383..1889462, 1889569..1889698,1889797..1889879,1889984..>1890164)) /locus_tag="TCM_021942" /note="encoded by transcript variant 4; alternatively spliced; dbxref frave:gene18404; paralog of Thecc1EG004967t1" /codon_start=1 /product="Pectinacetylesterase family protein isoform 4" /protein_id="EOY07535.1" /db_xref="TAIR:AT3G09410.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SR22" /translation="IRTLTWWRKWAKRDWAIAAVGFTIILFALTLLFDSRNPDLNSTD DLVPLTFLHRAKATGAFCLDGSLPAYHFQKGFGSGSNSWVLHIEGGGWCNSIESCNYR KRTALGSSNYMDQLVQFSGILSRHPSQNPDFYNWNKVKIRYCDGASLAGHPESEFKNG TKLFFRGQLIWEAFTDELLSLGLSNAKQALLSGCSAGGLATLIHCDDFRDHLPKDATV KCLADAGFFLDEPDILGQRTMRAFYHDVVQLQGTAKSLHKNCVGRMEPSKCFFPQEIV KNVRTPLFIVNPAYDFWQIQHILVPDASDPHG" CDS complement(join(1887046..1887266,1887426..1887531, 1887661..1887738,1887892..1887945,1888189..1888249, 1888927..1889051,1889188..1889277,1889383..1889462, 1889569..1889698,1889797..1889879,1889984..1890179)) /locus_tag="TCM_021942" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29846.m000189; paralog of Thecc1EG004967t1" /codon_start=1 /product="Pectinacetylesterase family protein isoform 2" /protein_id="EOY07533.1" /db_xref="TAIR:AT3G09410.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SR22" /translation="MANPRIRTLTWWRKWAKRDWAIAAVGFTIILFALTLLFDSRNPD LNSTDDLVPLTFLHRAKATGAFCLDGSLPAYHFQKGFGSGSNSWVLHIEGGGWCNSIE SCNYRKRTALGSSNYMDQLVQFSGILSRHPSQNPDFYNWNKVKIRYCDGASLAGHPES EFKNGTKLFFRGQLIWEAFTDELLSLGLSNAKQALLSGCSAGGLATLIHCDDFRDHLP KDATVKCLADAGFFLDEPDILGQRTMRAFYHDVVQLQGTAKSLHKNCVGRMEPSKCFF PQEIVKNVRTPLFIVNPAYDFWQIQHILVPDASDPHGYWSRCRLNIQNCNSSQIETLQ GFRNSLLKALSELQQNEEVGMFINSCFIHCQTLMAETWHSPRINNKVRNVFIIYYGDK MIVFRIYHDSQNKKF" CDS complement(join(1887421..1887531,1887661..1887738, 1887892..1887945,1888189..1888249,1888927..1889051, 1889188..1889277,1889383..1889462,1889569..1889698, 1889797..1889879,1889984..>1890164)) /locus_tag="TCM_021942" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene18404; paralog of Thecc1EG004967t1" /codon_start=1 /product="Pectinacetylesterase family protein isoform 3" /protein_id="EOY07534.1" /db_xref="TAIR:AT3G09410.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SR22" /translation="IRTLTWWRKWAKRDWAIAAVGFTIILFALTLLFDSRNPDLNSTD DLVPLTFLHRAKATGAFCLDGSLPAYHFQKGFGSGSNSWVLHIEGGGWCNSIESCNYR KRTALGSSNYMDQLVQFSGILSRHPSQNPDFYNWNKVKIRYCDGASLAGHPESEFKNG TKLFFRGQLIWEAFTDELLSLGLSNAKQALLSGCSAGGLATLIHCDDFRDHLPKDATV KCLADAGFFLDEPDILGQRTMRAFYHDVVQLQGTAKSLHKNCVGRMEPSKCFFPQEIV KNVRTPLFIVNPAYDFWQIQHILVPDASDPHGYWSRCRLNIQNCNSSQIETLQG" mobile_element complement(1888464..1888808) /note="source:scaffold_1_CACTA_0008 7159 7384" /mobile_element_type="transposon:TIR/CACTA" gene complement(1890503..1894013) /locus_tag="TCM_021943" /note="dbxref CacaoGD:Thecc1EG021943" mRNA complement(join(1890503..1891117,1891198..1891340, 1891480..1891684,1891775..1891912,1892087..1892357, 1892673..1893006,1893265..1893353,1893474..1894013)) /locus_tag="TCM_021943" /product="DIE2/ALG10 family" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s08500.1" /inference="similar to AA sequence:Phytozome:GSVIVT01034179001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1381t4" CDS complement(join(1890858..1891117,1891198..1891340, 1891480..1891684,1891775..1891912,1892087..1892357, 1892673..1893006,1893265..1893353,1893474..1893563)) /locus_tag="TCM_021943" /codon_start=1 /product="DIE2/ALG10 family" /protein_id="EOY07536.1" /db_xref="Phytozome:GSVIVT01034179001" /db_xref="TAIR:AT5G02410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L638" /translation="MGRIAVAAIVSVWVIPISILVNRIVPDPYMDEIFHIPQAQQYCN GNFRSWDPMITTPPGLYYLSLVHVAALFPGNYFLQLASSFPEVCSTAALRSLNGVLAV LCSILVYEIITHLRPALDDRKATLFAAVLALYPLHWFFTFFYYTDVASLTAVLAMYLA CLKKKYLFSALLGAMAVVIRQTNIIWMLFVTCSGVIDITLAHQRDSAKVYNLKANKGI SPSTLITSVNVSSNLRKRKSRGNSEANKHSFYRTNTSSTSQTSGLLYEIQAIVFTAWR IKWELLVSFSPFFFVLLAFVGFLICNGSVVLGAKEAHTVSPHFAQIMYFSIVSALFAA PLHFTIGQALDLFWSFWKNRLLGFFLGFLALIASLLSVHFFSIAHPYLLADNRHYTFY LWRKIINFHWSMKYLLVPVYVYSWFSIFHLLDKTQRRIWVLVYFLATSAVLVPAPLIE FRYYTIPFYFYMLHTGINDCQSLLLMGILYTVLNVFTMRMFLFRPFHWDHEPGVQRFI W" gene complement(1894288..1897136) /locus_tag="TCM_021944" /note="dbxref CacaoGD:Thecc1EG021944" mRNA complement(join(1894288..1894702,1894797..1895410, 1895668..1896061,1896184..1896254,1896865..1897136)) /locus_tag="TCM_021944" /product="Actin 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s20710.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041851t2" /inference="similar to AA sequence:ricco:29613.m000365" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07832t00001" CDS complement(join(1894637..1894702,1894797..1895410, 1895668..1896061,1896184..1896243)) /locus_tag="TCM_021944" /note="dbxref ricco:29613.m000365; paralog of Thecc1EG041851t2" /codon_start=1 /product="Actin 3" /protein_id="EOY07537.1" /db_xref="TAIR:AT3G53750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P53496" /translation="MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTG VMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEE HPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDG VSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKL AYIALDYEQELETAKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGI HETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAP PERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF" mobile_element complement(1897553..1897725) /note="source:CACAO_PIF_E465_scaffold_115 210 370" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(1898143..1898155) /note="source:CACAO_M_E4753_F17_scaffold_2 7760 7834" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1898156..1898552) /note="source:scaffold_2_CACTA_0244 14284 14702" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1898543..1899479) /note="source:scaffold_2_CACTA_0244 13462 14460" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(1898553..1898646) /note="source:INTACT135F_F90_scaffold_2-int 13527 14001" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(1898647..1898732) /note="source:CACAO_M_E4753_F17_scaffold_2 7215 7759" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1900377..1900468) /note="source:CACAO_M_E22931_F20_scaffold_3 866 946" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(1900503..1903556) /locus_tag="TCM_021946" /note="dbxref CacaoGD:Thecc1EG021946" mRNA complement(join(1900503..1901711,1902436..1902503, 1902955..1903556)) /locus_tag="TCM_021946" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.65 coverage" CDS complement(join(1901465..1901711,1902436..1902503, 1902955..1903029)) /locus_tag="TCM_021946" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07538.1" /translation="MPALQQMGFTCYVIGGWVKGPFKREGKKERERLAFVVEEIRSRK SAVNKDKFLIFEVEGISYRIYGFYQSTSIKQQYGQKQDLQLLAWFQARCVDLTACITT TLQRSSPHHLRLFHAICVNTVCTYEVD" mobile_element 1904596..1904657 /note="source:CACAO_M_E42040_F98_scaffold_5 608 673" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1904611..1904667) /note="source:CACAO_M_E22186_F143_scaffold_3 9947 10006" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(1904623..1904683) /note="source:CACAO_PIF_E144_scaffold_10 5995 6055" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 1904639..1904690 /note="source:CACAO_Mutator_E1149_scaffold_5 4716 4767" /mobile_element_type="transposon:TIR/Mutator" gene 1905047..1905713 /locus_tag="TCM_021947" /note="dbxref CacaoGD:Thecc1EG021947" mRNA 1905047..1905713 /locus_tag="TCM_021947" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s08490.1" /inference="similar to AA sequence:ricco:30025.m000573" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g10141t00001" CDS 1905124..1905648 /locus_tag="TCM_021947" /note="dbxref ricco:30025.m000573" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07539.1" /translation="MYAEFSQVSVLSMSNSEVFLVKDDGEGMELGIVKRPALEFREEC AQATASSHNPDKEPQVDEEKKGGEPSVTASTESEQKKPCLGEFKAIDDDDGFKTPTSL DHKIPVIKQCPPAPRKPKPAPLPSNKRKASSSPITRRNLQLDLSLEIESLFPRPLLAD LHRKVKKARNEDNQ" gene 1907971..1913404 /locus_tag="TCM_021948" /note="dbxref CacaoGD:Thecc1EG021948" mRNA join(1907971..1909846,1910026..1910116,1910215..1910372, 1910701..1910752,1910860..1910939,1911048..1911141, 1911233..1911985,1912580..1912700,1912789..1913404) /locus_tag="TCM_021948" /product="Transducin/WD40 repeat-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30025.m000574" /inference="similar to AA sequence:Phytozome:POPTR_0006s08480.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2325t1" CDS join(1908224..1909846,1910026..1910116,1910215..1910372, 1910701..1910752,1910860..1910939,1911048..1911141, 1911233..1911985,1912580..1912700,1912789..1913158) /locus_tag="TCM_021948" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein, putative" /protein_id="EOY07540.1" /db_xref="Phytozome:POPTR_0006s08480.1" /db_xref="TAIR:AT2G37670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HBL0" /translation="MDSRKMDRRKTMTMNWDGLRDDDDEFFESYDRMSSVVPLDLASS GSEDEDEDFDDCRISFASAVSSVHTPQFRAFATKATPMSPDYDIWMASPGSVKERRQR LFQGMGLSPDKELLSFKRVVSNKVPNGQVQTTTKVPVAVTSVSTTDNQDNNEDSSKPE LPHSPLPILFVRSRSEGEIESLSIEKKRKEELLGSISKQRLTRTSSLISTPHAKSYPY QESIRASPKGAGNSRTIKQNGGLTSMFSKNRFGAFFLIKNLDTGKEFIVNEYDQDGMW NKLSDLQTGKQLTMEEFEKCVGYSPVVKELMRRENVNRMIGDSGIDRKFNSYLSKSLR MSKRRGAAVLRSIKGVANSMTLRGEKERESVLAPEPKNGGKNGNNQWVKVRQTGKSYK ELSALHLCQEIQAHEGSIWTIRFSTDTRFLASAGEDKIIHVWEVQECEVMSMSEGSLT PGNLTPLHPSLSSSPLHPSLSMSQDQSGLLEAVGNLHEKKKKGKGSSSKKGNQIPDYV HVPETVFSLSDKPVCSFKGHLDDVLDLSWSRSQQLLSSSMDKTVRLWDLESKSCLKLF AHNDYVTCIHFNPMDDDYFISGSLDAKVRIWNIPDRQVVDWTDLHEMATSACYTPDGQ GAIIGSHKGTCRMYSTKDYKLTQLEQITIQTKKKAHAKKITGFQFCPINPSEVLITSA DSRIRILDGSEVIYKFKGFRNTSSQISASFTSDGKYIVSASEDSQVFVWRYDESRNTG AGKRSVITARGYEYFPCKDVSVAIPWPGTIRGEAPSMPIAHSKRHSKRSPPQQTNTNC ESPTKEDSPRANNNKKGLPPLPKKNNNNNNVERSVTPPEEELPQISRTDTGIGESPSI SKSSSLRYGDSPSVSAASNLNASSSIRAGDSPSISSASNPSSASIRYGDSPSISSATP SSSWSASWSWFDVGGHGNHHTQATAWGLVIVTATVGVRICGAKSIAEKIRMEDSAPLA TVEDIQKRLLRPPSLHTSPEGLNSSQLKVSLKQSGTVKKKLEDYLHPVLLAAVSSKIG HSKKAKAETGLKREVRGFEWPVDELKVFVEDDSRIANRASWRNREAVDLNNDFDAIGD GGDENEEIASPFQRFEKTALKNFKS" gene 1914635..1916860 /locus_tag="TCM_021949" /note="dbxref CacaoGD:Thecc1EG021949" mRNA join(1914635..1915259,1915355..1915412,1915495..1915612, 1915698..1915815,1916476..1916860) /locus_tag="TCM_021949" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034185001" /inference="similar to AA sequence:ricco:30025.m000578" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g07997t00001; inference alignment:Newbler:10:TSA:cgbaP2_g07997t00001" mRNA join(1914679..1915259,1915355..1915506) /locus_tag="TCM_021949" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034185001" /inference="similar to AA sequence:ricco:30025.m000578" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc616t2; inference alignment:Newbler:10:TSA:cgbaP2_g07997t00001" CDS join(1914717..1915259,1915355..1915412,1915495..1915612, 1915698..1915815,1916476..1916529) /locus_tag="TCM_021949" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30025.m000578" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY07541.1" /db_xref="TAIR:AT3G09430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SP06" /translation="MNSVNSPIAYTVEDKDLDDAALWAVIDSAAASHSSSKHRKTLAI KFPNHQSPLTPASHPSPPQKIPHQNPSHHLYSPPNTNHRRLANAGEDYHRPYKIARSC ASEVSESSPMAIVQRTPIASFPEYRSPETYLSPGFGGNGSEVSLESCGRSDEKEGMRH SLSGKFPSVELFKEYQNAAMAILEKSDYTMISGNPFIKKSGWRKISFYFNLSFEIKDK NIEFDENRNVQRAEFVVRAYMQGGRFSDGWGSCERREKRFLKPNHDIPSTAETRAKNK ACQDLLGIGEYRPGASQFRQ" CDS join(1914717..1915259,1915355..1915456) /locus_tag="TCM_021949" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30025.m000578" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY07542.1" /db_xref="TAIR:AT3G09430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SP06" /translation="MNSVNSPIAYTVEDKDLDDAALWAVIDSAAASHSSSKHRKTLAI KFPNHQSPLTPASHPSPPQKIPHQNPSHHLYSPPNTNHRRLANAGEDYHRPYKIARSC ASEVSESSPMAIVQRTPIASFPEYRSPETYLSPGFGGNGSEVSLESCGRSDEKEGMRH SLSGKFPSVELFKEYQNAAMAILEKSDYTMISGNPFIKKSGKLSLVLLFTLTII" mobile_element complement(1917561..1917669) /note="source:scaffold_4_CACTA_0483 1019 1127" /mobile_element_type="transposon:TIR/CACTA" gene 1918361..1921360 /locus_tag="TCM_021950" /note="dbxref CacaoGD:Thecc1EG021950" mRNA join(1918361..1918386,1918660..1918698,1918805..1918954, 1919831..1921360) /locus_tag="TCM_021950" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s08460.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041854t1" /inference="similar to AA sequence:Phytozome:GSVIVT01034186001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc588t16" CDS join(1918687..1918698,1918805..1918954,1919831..1920298) /locus_tag="TCM_021950" /note="paralog of Thecc1EG041854t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07543.1" /db_xref="Phytozome:GSVIVT01034186001" /db_xref="TAIR:AT5G02440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T5R8" /translation="MAQREEGWPLGLQPLNARIGLVRTRDFSGSVSFSTLLTASPSSS SISSSDLDTQSTGSFFHDNSITLGSLLGASSFLELSRRSTRRRTTETLRDQKSRPWLF SLCSKLSTDAVDTNNAHSLGHFLEVERRAANIYRRNQTPTAYGPDDFSQVMHTSEPNS LFVGDQIAPGSNAALSAEDGRKSDRELLEHGNGYGVPLLLSCLCGQLIK" gene complement(1920510..1923904) /locus_tag="TCM_021951" /note="dbxref CacaoGD:Thecc1EG021951" mRNA complement(join(1920510..1921358,1921651..1921912, 1922515..1922622,1922699..1922839,1922932..1923053, 1923155..1923226,1923323..1923382,1923523..1923904)) /locus_tag="TCM_021951" /product="XB3 in, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034187001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041855t1" /inference="similar to AA sequence:frave:gene18385" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05611t00001" CDS complement(join(1920942..1921358,1921651..1921912, 1922515..1922622,1922699..1922839,1922932..1923053, 1923155..1923226,1923323..1923382,1923523..1923702)) /locus_tag="TCM_021951" /note="dbxref frave:gene18385; paralog of Thecc1EG041855t1" /codon_start=1 /product="XB3 in, putative" /protein_id="EOY07544.1" /db_xref="TAIR:AT2G28840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94B55" /translation="MGQKLSCGENHETSLFSAVQTGDLEMVQAMVEAEPNTLKRTTRY GRSSILHVAAVYGQIEVLSFLLDRCPNSDILNRHRQTPLMLAAMHGKTDCVKMLIQRG AYVLMFDSLQGRTCLHYVAYYGHFDCLQALLSAAHSSPLADSWGFARFVNIRDENGAT PLHLAARQGWSNCVHALLDNGALVCASTGGNGYPGSTPLHFAASGGSIECIRKLLAWG ADRLQPDSYGRIPYLIALKHKHEACAALLDPASAEPLVWPLPLRFISDLNPEAKELLE KALMEANREREKAILQDTIHALPCASDSEVEADHDTTSEASDVDVCCICFDQLCTIEI RQCGHRMCAHCTLALCCHKKPNPLTSSPVVPICPFCRRGITQLAVAKINNNEAEAAEA SPPLRLSCGNITNNDTGPEFSPSKPIKSRKSNFSEGSSSLKGLSAISSFGKMGSRGRK SAS" mobile_element 1921443..1938409 /note="source:scaffold_5_CACTA_0580 1 16967" /mobile_element_type="transposon:TIR/CACTA" gene complement(1924484..1925614) /locus_tag="TCM_021952" /note="dbxref CacaoGD:Thecc1EG021952" mRNA complement(1924484..1925614) /locus_tag="TCM_021952" /product="Agenet domain-containing protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400046985" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021953t1" /inference="similar to AA sequence:Phytozome:POPTR_0009s15325.1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.47 coverage" CDS complement(1925111..1925527) /locus_tag="TCM_021952" /note="paralog of Thecc1EG021953t1" /codon_start=1 /product="Agenet domain-containing protein, putative" /protein_id="EOY07545.1" /db_xref="Phytozome:POPTR_0009s15325.1" /db_xref="TAIR:AT1G06340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7KG24" /translation="MAVFCKGDEVEVCSKEEGFLGSYYEATVISRLKDSHYKVQYKTL VEEEDQSRPLVEIVTADEVRPVPPKTIGEVTWFFFYLQRVDAFDNDGWWVGRITGRQG SRYLVYFPTTGDEILYPVSQLRNNLEWCDGNWVSSK" gene complement(1929339..1930044) /locus_tag="TCM_021954" /note="dbxref CacaoGD:Thecc1EG021954" mRNA complement(1929339..1930044) /locus_tag="TCM_021954" /product="Plant Tudor-like protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021952t1" /inference="similar to AA sequence:Phytozome:POPTR_0009s15325.1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.65 coverage" CDS complement(1929620..1930021) /locus_tag="TCM_021954" /note="paralog of Thecc1EG021952t1" /codon_start=1 /product="Plant Tudor-like protein, putative" /protein_id="EOY07546.1" /db_xref="Phytozome:POPTR_0009s15325.1" /db_xref="TAIR:AT1G06340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HQJ8" /translation="MAVFCKGNEVEVCSNEEGFLRSYIEAKVISRLKDSRYKVHDKNL VEEEDQSRPLFEIVTADEVRPLPPRTAREATRIFTYSGRGDAFHNDGWRVGRITGEEG FKYWVYFPLTREEIEFPPSQLRIHLEWCNGV" gene complement(1937475..1940061) /locus_tag="TCM_021955" /note="dbxref CacaoGD:Thecc1EG021955" mRNA complement(join(1937475..1937628,1938545..1939757, 1939920..1940061)) /locus_tag="TCM_021955" /product="DNA binding with one finger 2.4, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s08440.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042784t2" /inference="similar to AA sequence:Phytozome:GSVIVT01034189001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2114t4" mobile_element 1938619..1938658 /note="source:CACAO_M_S_E85757_F233_scaffold_7 2624 2663" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(1938762..1939757,1939920..1939970)) /locus_tag="TCM_021955" /note="paralog of Thecc1EG042784t2" /codon_start=1 /product="DNA binding with one finger 2.4, putative" /protein_id="EOY07547.1" /db_xref="Phytozome:GSVIVT01034189001" /db_xref="TAIR:AT2G37590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HLD4" /translation="MVFTSIPAYLDPANWQQHPNHQPGASSGASAHQLPPPPPPPPPP QPHGGGGAGSIRPGSMADRARMANIPMPEVATKCPRCESTNTKFCYFNNYSLTQPRHF CKTCRRYWTRGGALRNVPVGGGCRRNKRSKAGSSSKSPVSGDRQTASGSSSTISSNSG STADILGLGPQLPPLRFMAPLHHLSEFGGSDIGLNYGTISAPLGGASDLTFQIGSALA SGGAGGGGGAAAAPGTSLLTMSGLDQWRLQQQAPQFPFLGGLESSSGLYQFESGGVEP SGYGGGAGHQVRPKISSSSATQLASVKMEDNNQQELNLSRQFLGVPGNDQYWSGTAWT DLSSFSSSSTSNPL" gene complement(1941038..1944776) /locus_tag="TCM_021956" /note="dbxref CacaoGD:Thecc1EG021956" mRNA complement(join(1941038..1941564,1941678..1941748, 1941914..1942012,1942382..1942450,1942594..1942737, 1942837..1942902,1943463..1943506,1943733..1943794, 1944045..1944193,1944610..1944615,1944683..1944776)) /locus_tag="TCM_021956" /product="Transcription factor DP isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT5G02470.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022240t1" /inference="similar to AA sequence:Phytozome:GSVIVT01034190001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1853t1; alternateUTRof:Thecc1EG021956t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1420t2" mRNA complement(join(1941121..1941564,1941678..1941748, 1941914..1942012,1942382..1942450,1942594..1942737, 1942837..1942902,1943463..1943506,1943733..1943794, 1944045..1944272,1944683..1944745)) /locus_tag="TCM_021956" /product="Transcription factor DP isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT5G02470.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022240t1" /inference="similar to AA sequence:Phytozome:GSVIVT01034190001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1420t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1420t2" CDS complement(join(1941393..1941564,1941678..1941748, 1941914..1942012,1942382..1942450,1942594..1942737, 1942837..1942902,1943463..1943506,1943733..1943794, 1944045..1944190)) /locus_tag="TCM_021956" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG022240t1" /codon_start=1 /product="Transcription factor DP isoform 1" /protein_id="EOY07548.1" /db_xref="Phytozome:GSVIVT01034190001" /db_xref="TAIR:AT5G02470.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FNY3" /translation="MDDPYLEDSPSCEQSPVATPSNASTSGSARGLNQSAVKQRNASA DVVDGTTRKKVSRMPGGGLRQFSVMVCKKLESKGSTTYAEVADEIIEEFATAQTNTAR SLDEFHEKNVRRRVYDALNVLMALDIITREKKEISWKGLSTTTQAKNLEELKALHVQL MTGIAKKAAYLKDLEEQIAGLQNIIERNQQLLKKSSAPKEGFTLPFILVQTSPHATVE IEISEDMQLVHLDFNSTPFSLHDDAYVLKLMRYYQRPESRNTSQSSSIHSSSSSCKAT VKPFYWNSETETPR" CDS complement(join(1941393..1941564,1941678..1941748, 1941914..1942012,1942382..1942450,1942594..1942737, 1942837..1942902,1943463..1943506,1943733..1943794, 1944045..1944190)) /locus_tag="TCM_021956" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG022240t1" /codon_start=1 /product="Transcription factor DP isoform 1" /protein_id="EOY07549.1" /db_xref="Phytozome:GSVIVT01034190001" /db_xref="TAIR:AT5G02470.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FNY3" /translation="MDDPYLEDSPSCEQSPVATPSNASTSGSARGLNQSAVKQRNASA DVVDGTTRKKVSRMPGGGLRQFSVMVCKKLESKGSTTYAEVADEIIEEFATAQTNTAR SLDEFHEKNVRRRVYDALNVLMALDIITREKKEISWKGLSTTTQAKNLEELKALHVQL MTGIAKKAAYLKDLEEQIAGLQNIIERNQQLLKKSSAPKEGFTLPFILVQTSPHATVE IEISEDMQLVHLDFNSTPFSLHDDAYVLKLMRYYQRPESRNTSQSSSIHSSSSSCKAT VKPFYWNSETETPR" gene complement(1945005..1950179) /locus_tag="TCM_021957" /note="dbxref CacaoGD:Thecc1EG021957" mRNA complement(join(1945005..1945960,1946735..1946850, 1946954..1947029,1948368..1949379,1949747..1950179)) /locus_tag="TCM_021957" /product="Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma18g28140.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018321t1" /inference="similar to AA sequence:ricco:30025.m000582" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1432t2" CDS complement(join(1945446..1945960,1946735..1946850, 1946954..1947029,1948368..1948908)) /locus_tag="TCM_021957" /note="dbxref ricco:30025.m000582; paralog of Thecc1EG018321t1" /codon_start=1 /product="Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein" /protein_id="EOY07550.1" /db_xref="TAIR:AT2G37585.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8S8P3" /translation="MKRTQFPYSPDRSWLLLVLVISIISLTFLLALTFTQSESSSSET DFSFHQPKFTFSERDYRRLPKLPRFAYLISGTKGDGPRVKRLLQSVYHPRNYYVLHLD LEASDSERLELAKYVKSEGVFREFGNVMVIGKADLVTYKGPTMIASTLHAVAILLKKA KEWDWFLNLSASDYPLMSQDDIVHIFSYLPRDLNFLEHTSSIGWKEYQRARPIIIDPG LYHSKKSGVFWAKEKRSLPASFKLFMGSEWVVLTKSFLEFCVWGWDNLPRTLLMYYTN FLSSPEGYFHTVICNNKDYQNTTVNHDLHYIRWDNPPKQHPMTLTLEHFDDMVQSGAP FARKFAKDDPVLNKIDKELLRRSYGQLTPGGWCVGGSYSGKDPCVVYGNPNAVKPSVS SKRLEKLLVKLLDSESFRSKQCK" gene complement(1950710..1952687) /locus_tag="TCM_021958" /note="dbxref CacaoGD:Thecc1EG021958" mRNA complement(join(1950710..1951069,1951174..1952687)) /locus_tag="TCM_021958" /product="RING-H2 finger protein ATL2J, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s18290.1" /inference="similar to AA sequence:ricco:30025.m000583" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13219t1" CDS complement(1951759..1952481) /locus_tag="TCM_021958" /note="dbxref ricco:30025.m000583" /codon_start=1 /product="RING-H2 finger protein ATL2J, putative" /protein_id="EOY07551.1" /db_xref="TAIR:AT2G37580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SP11" /translation="MENSPTVIRPPPPPPQPPPSFVASPPVSQLDNTTNSTSIRSPPP LPFSSTPQIYPIDQNGTVSIVSSNPPPPFPDSPRSVDLSPLEFILALMAVITIPAIIY AFFFAVKCPPWTSRERPDSPRELPRDSRGSGVEVIERRREPVSAVKYQKETHSKDIGN ECPVCLSVFADGEEVRQLSGCKHSFHATCIDMWLNNHNNCPVCRASVTVKRPNNHGTA SGSARSRESDLQQGLPDATSLV" gene complement(1953246..1954016) /locus_tag="TCM_021959" /note="dbxref CacaoGD:Thecc1EG021959" mRNA complement(1953246..1954016) /locus_tag="TCM_021959" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30025.m000584" /inference="similar to AA sequence:ricco:30025.m000584" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1428t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc5883t1" CDS complement(1953453..1953947) /locus_tag="TCM_021959" /note="dbxref ricco:30025.m000584" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07552.1" /translation="MDEEGKQGFRLNPILVGLLGVIAGAIMFATFHLVSSVCNCYRRQ VVDTANTSQNVERNQQERASDRIRSPSTPRLIPIFRYSKDCNEETCAVCLSDFKEGEQ IRVLPDCLHIFHVACIDAWLNLHSNCPLCRADTSPPEQVAVPLPDSDGPQPMELNRLP DFGL" mobile_element 1955720..1955820 /note="source:INTACT433_F212_scaffold_1-int 3050 3148" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(1957545..1957629) /note="source:INTACT433_F212_scaffold_1-int 3052 3137" /mobile_element_type="retrotransposon:LTR/Copia" gene 1958888..1961877 /locus_tag="TCM_021960" /note="dbxref CacaoGD:Thecc1EG021960" mRNA join(1958888..1959306,1959882..1961877) /locus_tag="TCM_021960" /product="HSP20-like chaperones superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30025.m000588" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041867t1" /inference="similar to AA sequence:ricco:30025.m000588" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc283t5" CDS 1960019..1961524 /locus_tag="TCM_021960" /note="dbxref ricco:30025.m000588; paralog of Thecc1EG041867t1" /codon_start=1 /product="HSP20-like chaperones superfamily protein" /protein_id="EOY07553.1" /db_xref="TAIR:AT2G37570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D8TBY2" /translation="MGDSLLTALSMENHHPSTLLSMDSSASSHDELDLEMNRQIVLSR PPDINLPLSAERSPPPQQWNSDQCDILDVGLHSQVYETESYLTVPKPGRKCAKRVDSI WGAWFFFSFYFKPALNDKSKAKIIRDSNGVTGFDKSDLKLDVFMVQHDMENMYMWVFK ERPENALGKMQLRSYMNGHSRQGERPFPFSADKGFVRSHRMQRKHYRGLSNPQCVHGI EVIPSPNLMALDEEEQKRWMDLTGRDLNFTIPPEASDFSSWRNLPNTDFELERPPTIK SVSNSHSKKLLNGSGLNLSTQPSSHSNGDGMDLSLVSNKRRKDFFPHGSDEDFILSVI PPSDRIPDMEIHPSEPLWLNDFSGVMKNVYGPVTAAKTIYEDEAGYLIIISLPFVDLQ RVKVSWRNTLTRGIIKVSCVSTSRMPFIKRHDRTFKLTDPASEHCPPGEFVREIPLST RIPEDANIEAYYDRPGSVLEIMVPKLRVMPEEHEVRVCLRPNLGGSDLMLK" gene complement(1963129..1966653) /locus_tag="TCM_021961" /note="dbxref CacaoGD:Thecc1EG021961" mRNA complement(join(1963129..1965474,1966323..1966653)) /locus_tag="TCM_021961" /product="Heat shock cognate protein 70-1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30025.m000589.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042785t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s05410.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.43 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00001c00188" CDS complement(join(1963748..1965474,1966323..1966536)) /locus_tag="TCM_021961" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042785t1" /codon_start=1 /product="Heat shock cognate protein 70-1 isoform 1" /protein_id="EOY07554.1" /db_xref="Phytozome:POPTR_0008s05410.1" /db_xref="TAIR:AT5G02500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P08107" /translation="MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSY VGFTDTERLIGDAAKNQVAMNPVNTVFDAKRLIGRRFSDASVQSDIKLWPFKVISGPG DKPMIVVSYKGEEKQFAAEEISSMVLMKMREIAEAFLGFAVKNAVVTVPAYFNDSQRQ ATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTI EEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERA KRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDK STVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNE KVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYE GERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKIT ITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGA KLPPADKKKIEDAIEQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQGAGADM GGMDEDVPAGGNGAGPKIEEVD" mRNA complement(join(<1964366..1965474,1966323..>1966585)) /locus_tag="TCM_021961" /product="Heat shock cognate protein 70-1 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30025.m000589.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042785t1" /inference="similar to AA sequence:ricco:29887.m000234" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is medium, protein is partial; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc210t12; inference alignment:Newbler:10:TSA:cgbaP1_g00001c00188" CDS complement(join(<1964366..1965474,1966323..>1966584)) /locus_tag="TCM_021961" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29887.m000234; paralog of Thecc1EG042785t1" /codon_start=1 /product="Heat shock cognate protein 70-1 isoform 2" /protein_id="EOY07555.1" /db_xref="TAIR:AT5G02500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2EKI5" /translation="SFFIFFFVDTAKEEKVMAGKGEGPAIGIDLGTTYSCVGVWQHDR VEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPVNTVFDAKRLIGRRFSDASV QSDIKLWPFKVISGPGDKPMIVVSYKGEEKQFAAEEISSMVLMKMREIAEAFLGFAVK NAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVL IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDIS GNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRK CMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVA YGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVF STYSDNQ" mobile_element complement(1967345..1967466) /note="source:scaffold_3_CACTA_0377 5133 5252" /mobile_element_type="transposon:TIR/CACTA" gene 1969646..1974205 /locus_tag="TCM_021962" /note="dbxref CacaoGD:Thecc1EG021962" mRNA join(1969646..1970022,1970604..1970811,1971360..1971696, 1972416..1973389,1973555..1974205) /locus_tag="TCM_021962" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034198001" /inference="similar to AA sequence:Phytozome:GSVIVT01034198001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:PASA:2:TSA:puevd3b021260t1a3; inference alignment:Newbler:10:TSA:cgbaP2_g01487t00001" mRNA join(1969646..1970022,1970604..1970811,1971360..1971696, 1972416..1973342,1973555..1974205) /locus_tag="TCM_021962" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034198001" /inference="similar to AA sequence:Phytozome:GSVIVT01034198001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01487t00001" mRNA join(1969646..1970022,1970604..1970805,1971360..1971696, 1972416..1973342,1973555..1974205) /locus_tag="TCM_021962" /product="Uncharacterized protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034198001" /inference="similar to AA sequence:Phytozome:GSVIVT01034198001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:PASA:2:TSA:puevd3b021260t1a2; inference alignment:Newbler:10:TSA:cgbaP2_g01487t00001" mRNA join(1969863..1970022,1970604..1970811,1971360..1971696, 1972416..1972824,1973299..1973342,1973555..1974086) /locus_tag="TCM_021962" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034198001" /inference="similar to AA sequence:Phytozome:GSVIVT01034198001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc653t1; inference alignment:Newbler:10:TSA:cgbaP2_g01487t00001" CDS join(1969931..1970022,1970604..1970811,1971360..1971696, 1972416..1973389,1973555..1973779) /locus_tag="TCM_021962" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY07557.1" /db_xref="Phytozome:GSVIVT01034198001" /translation="MEAVTVSDNSVELEAKRKEDSSWHPCRVYLSSSGDSLIVNFGRQ ELDDMLLQKEEVLMHLRFRSMPLQVDDCFHIEEGERVLADRKSQFKILFHDAVVVKVD RVRHSKRGCRCTFMIKWLDQDLEGQTFTLPSSSIMKLATKSISAHPIINKLLKPEKHR GLSYSSPLLTILEGTDSEIDLNKLLQKQIEQISNLADASKKDIPEDIPWRNKGVNKGQ SPHKPTAESNACVPAVADHHNHLKRTTRSTRKLQINIEAENQSGHTISMKEAFIQSRS HLSPLASRAALASSLLTAKKCLDMDLSSSMTASMFMKGKDSSDILAVSIPLVSEASHE ISPHISTQGDASCEPQPTKPSSCIPTKGWENENKTSDEINCTAEQRTYSPVKITAESV TSGVATSTAELPISRAKKSLVHANFNASSTAPIRLTRSATRKGAVIPNNCVQVKICVN DTKRRMSGNKNQLSRSAVFQGNENLANEEENNSTHIIDSDSSEGNIAAPDQSNVATTK STTSEKMKAALTPCNPEIHILTKEGNKSWAKIWTVVGVIKARREKQFIILSKTGDFLL EIFYLALALGIRPSLGSREEPLAVNTYRTYISSSKCSRHQLSSGS" CDS join(1969931..1970022,1970604..1970811,1971360..1971696, 1972416..1973342,1973555..1973694) /locus_tag="TCM_021962" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY07556.1" /db_xref="Phytozome:GSVIVT01034198001" /translation="MEAVTVSDNSVELEAKRKEDSSWHPCRVYLSSSGDSLIVNFGRQ ELDDMLLQKEEVLMHLRFRSMPLQVDDCFHIEEGERVLADRKSQFKILFHDAVVVKVD RVRHSKRGCRCTFMIKWLDQDLEGQTFTLPSSSIMKLATKSISAHPIINKLLKPEKHR GLSYSSPLLTILEGTDSEIDLNKLLQKQIEQISNLADASKKDIPEDIPWRNKGVNKGQ SPHKPTAESNACVPAVADHHNHLKRTTRSTRKLQINIEAENQSGHTISMKEAFIQSRS HLSPLASRAALASSLLTAKKCLDMDLSSSMTASMFMKGKDSSDILAVSIPLVSEASHE ISPHISTQGDASCEPQPTKPSSCIPTKGWENENKTSDEINCTAEQRTYSPVKITAESV TSGVATSTAELPISRAKKSLVHANFNASSTAPIRLTRSATRKGAVIPNNCVQVKICVN DTKRRMSGNKNQLSRSAVFQGNENLANEEENNSTHIIDSDSSEGNIAAPDQSNVATTK STTSEKMKAALTPCKDMDSGRSNQGQKRKAVHHIKQDRRFSPRNFLPRTRSRNKAQPG K" CDS join(1969931..1970022,1970604..1970811,1971360..1971696, 1972416..1972824,1973299..1973342,1973555..1973694) /locus_tag="TCM_021962" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY07558.1" /db_xref="Phytozome:GSVIVT01034198001" /translation="MEAVTVSDNSVELEAKRKEDSSWHPCRVYLSSSGDSLIVNFGRQ ELDDMLLQKEEVLMHLRFRSMPLQVDDCFHIEEGERVLADRKSQFKILFHDAVVVKVD RVRHSKRGCRCTFMIKWLDQDLEGQTFTLPSSSIMKLATKSISAHPIINKLLKPEKHR GLSYSSPLLTILEGTDSEIDLNKLLQKQIEQISNLADASKKDIPEDIPWRNKGVNKGQ SPHKPTAESNACVPAVADHHNHLKRTTRSTRKLQINIEAENQSGHTISMKEAFIQSRS HLSPLASRAALASSLLTAKKCLDMDLSSSMTASMFMKGKDSSDILAVSIPLVSEASHE ISPHISTQGDASCEPKSTTSEKMKAALTPCKDMDSGRSNQGQKRKAVHHIKQDRRFSP RNFLPRTRSRNKAQPGK" CDS join(1969931..1970022,1970604..1970805,1971360..1971696, 1972416..1973342,1973555..1973694) /locus_tag="TCM_021962" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY07559.1" /db_xref="Phytozome:GSVIVT01034198001" /translation="MEAVTVSDNSVELEAKRKEDSSWHPCRVYLSSSGDSLIVNFGRQ ELDDMLLQKEEVLMHLRFRSMPLQVDDCFHIEEGERVLADRKSQFKILFHDAVVVDRV RHSKRGCRCTFMIKWLDQDLEGQTFTLPSSSIMKLATKSISAHPIINKLLKPEKHRGL SYSSPLLTILEGTDSEIDLNKLLQKQIEQISNLADASKKDIPEDIPWRNKGVNKGQSP HKPTAESNACVPAVADHHNHLKRTTRSTRKLQINIEAENQSGHTISMKEAFIQSRSHL SPLASRAALASSLLTAKKCLDMDLSSSMTASMFMKGKDSSDILAVSIPLVSEASHEIS PHISTQGDASCEPQPTKPSSCIPTKGWENENKTSDEINCTAEQRTYSPVKITAESVTS GVATSTAELPISRAKKSLVHANFNASSTAPIRLTRSATRKGAVIPNNCVQVKICVNDT KRRMSGNKNQLSRSAVFQGNENLANEEENNSTHIIDSDSSEGNIAAPDQSNVATTKST TSEKMKAALTPCKDMDSGRSNQGQKRKAVHHIKQDRRFSPRNFLPRTRSRNKAQPGK" mRNA join(1970788..1970871,1971360..1971696,1972416..1973342, 1973555..1974086) /locus_tag="TCM_021962" /product="Uncharacterized protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034198001" /inference="similar to AA sequence:Phytozome:GSVIVT01034198001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc653t2; inference alignment:Newbler:10:TSA:cgbaP2_g01487t00001" CDS join(1970869..1970871,1971360..1971696,1972416..1973342, 1973555..1973694) /locus_tag="TCM_021962" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 5" /protein_id="EOY07560.1" /db_xref="Phytozome:GSVIVT01034198001" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C5J4" /translation="MVDRVRHSKRGCRCTFMIKWLDQDLEGQTFTLPSSSIMKLATKS ISAHPIINKLLKPEKHRGLSYSSPLLTILEGTDSEIDLNKLLQKQIEQISNLADASKK DIPEDIPWRNKGVNKGQSPHKPTAESNACVPAVADHHNHLKRTTRSTRKLQINIEAEN QSGHTISMKEAFIQSRSHLSPLASRAALASSLLTAKKCLDMDLSSSMTASMFMKGKDS SDILAVSIPLVSEASHEISPHISTQGDASCEPQPTKPSSCIPTKGWENENKTSDEINC TAEQRTYSPVKITAESVTSGVATSTAELPISRAKKSLVHANFNASSTAPIRLTRSATR KGAVIPNNCVQVKICVNDTKRRMSGNKNQLSRSAVFQGNENLANEEENNSTHIIDSDS SEGNIAAPDQSNVATTKSTTSEKMKAALTPCKDMDSGRSNQGQKRKAVHHIKQDRRFS PRNFLPRTRSRNKAQPGK" gene 1974553..1976394 /locus_tag="TCM_021963" /note="dbxref CacaoGD:Thecc1EG021963" mRNA join(1974553..1974794,1975025..1975147,1975657..1976394) /locus_tag="TCM_021963" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30025.m000593" /inference="similar to AA sequence:Phytozome:POPTR_0006s08190.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Newbler:10:TSA:cgbaB_g15767t00001" CDS join(1974647..1974794,1975025..1975147,1975657..1976216) /locus_tag="TCM_021963" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07561.1" /db_xref="Phytozome:POPTR_0006s08190.1" /db_xref="TAIR:AT2G28780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HBE2" /translation="MGDDQQSVANQESGWFSIFQGILLQPFPSPQQVPPFAYMEGKEE LIPNARQTKATGDNIPDSLIRAKSYKANREIVTEASNSYVMTINSKGLLQETNMDTPK ALWRVRLGSAFRTVLACTIVGCTTLYGPEPVRRFLTFPAFSYVTTILIVSDTTLGDAL RGCWHVLYASIQVLLPSMLSLWLIGPARFSHGLAAMAVALSSFAIALPDSTHLMAKRI AFGQTLIVYVDAVIQGAETGVLMHPIHVASNSALGAWLLFWQCCFHTLTYPTSRQVAN " gene complement(1976626..1978116) /locus_tag="TCM_021964" /note="dbxref CacaoGD:Thecc1EG021964" mRNA complement(join(1976626..1977033,1977144..1977220, 1977390..1978116)) /locus_tag="TCM_021964" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400029787.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015651t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2303t2" CDS complement(join(1976960..1977033,1977144..1977220, 1977390..1977964)) /locus_tag="TCM_021964" /note="paralog of Thecc1EG015651t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07562.1" /translation="MAFYAIVWSVWLYRNDTVFRRVTWNVDQVFDLLKQRVATWAPAK WHHEYGVVLDTERYPAEGTVIKRRMRTRIVEEWSKPRKGEMKYNVDGAAPGCPGKVGI GGIMRDEEGNTKIVFSKAIGVEDASVAEVRAVREAFLTFAGSKLVATYSLIIESDSKN AVKWTNKPSEAPRRLRKWILHIERLKKEEKKWVMFLCLCLDTWKGLYLYVLRFNERFH DDDGFSFEGQPQIVNINESGVLF" gene 1978454..1981288 /locus_tag="TCM_021965" /note="dbxref CacaoGD:Thecc1EG021965" mRNA join(1978454..1979280,1979361..1981288) /locus_tag="TCM_021965" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30025.m000593" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041877t1" /inference="similar to AA sequence:ricco:30025.m000593" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.35 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc3464t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2471t2" CDS join(1979014..1979280,1979361..1981115) /locus_tag="TCM_021965" /note="dbxref ricco:30025.m000593; paralog of Thecc1EG041877t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07563.1" /db_xref="TAIR:AT2G28780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C5J4" /translation="MRISRFSDLKEGKKVHTVASLVAKLVANIMPVQVRKTCRSYAEN ASNRLNLLVEAFCARDNVAALDLIAEARLFSKTGAKLLRSIKGKHEGMLWEKPRFRFL KPKRSDPGEKLQEMEMPIRGMEVALSTCISFPVRMLDEELQGVLQISKKQIALKLEQA KCSVPFDAATAPETKGEYTDRSSWTQKAISTSHEDLSPFFFLYCMELLQDDPECIVEN EEGKSKKQESSQPKKQGKSRVELIWCSLLSFSRRLSSERLVFAIKCSFSLGLAVLLGL IYNKENGYWSGLTIAISFATGRQATFTMANARAQGTAMGSVYGILCCFIFQKLADLRF FLLLPWIIFTSFLRHSRMYGQAGGISAVIGALLILGRKNYGTPSEFAIARITEATIGL ICFITVEILLHPARSATLAKTELSRTIGALQDCFEVIGLYNRQKEISTEQREKLQKLK YHVSKLENFIAEAELEPNFWFLPFHCSCYKKLLSSLSKMADLLPFAIHQIEFLSQASQ RLGIHWEEIQEQINNDLEHLRDKIGSLVKCLDEVLLIKSLEELENELQKENASHDLEL GKSANGDFSIRLGHERNSIAEIVWPSLQHMMEVANETEGNEVEAKLKSQVLLCLCSLG FCINNMNREAIETEGTIGELLKWVYPARHVNLHELLPKLKKLGSGFAAT" gene complement(1983929..1985237) /locus_tag="TCM_021967" /note="dbxref CacaoGD:Thecc1EG021967" mRNA complement(join(1983929..1984350,1984488..1984579, 1984799..1985237)) /locus_tag="TCM_021967" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.51 coverage" CDS complement(join(1984297..1984350,1984488..1984579, 1984799..1984904)) /locus_tag="TCM_021967" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07564.1" /translation="MIFAMIILDGFSRLSNRTRNQELREAFAKFDHVIHDRMTKYTQG FGFVIYANLEHAEKGIKGREAQVVEGFNRVWQLDDCSGF" gene 1985198..1989392 /locus_tag="TCM_021968" /note="dbxref CacaoGD:Thecc1EG021968" mRNA join(1985198..1985502,1985611..1985696,1985782..1985926, 1986123..1986255,1986384..1986976,1987339..1987420, 1987932..1987990,1988636..1988729,1988986..1989392) /locus_tag="TCM_021968" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400015530" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:PASA:2:TSA:puevd3b021266t1a2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1212t10" mRNA join(1985198..1985502,1985611..1985696,1985782..1985926, 1986123..1986255,1986384..1986976,1987339..1987420, 1987932..1987990,1988146..1988197,1988636..1988729, 1988986..1989334) /locus_tag="TCM_021968" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400015530" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1212t10" mRNA join(1985288..1985502,1985611..1985696,1985782..1985926, 1986123..1986255,1986384..1987368) /locus_tag="TCM_021968" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400015530" /inference="similar to AA sequence:Phytozome:GSVIVT01034205001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1212t9; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1212t10" CDS join(1985416..1985502,1985611..1985696,1985782..1985926, 1986123..1986255,1986384..1986976,1987339..1987420, 1987932..1987990,1988636..1988725) /locus_tag="TCM_021968" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY07566.1" /db_xref="TAIR:AT5G02520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HLG5" /translation="MAPKTRSQKDYNGAQNDSKDGGSSYFQKTVSLHDWWLVKADKDF EGKRLAVAGSTSRELEAVRLFTSAPIVKRYDVFTLETADGICVCIKGFINRHRTEENG FSSEVFTHFSFGFPPYWEEYAKKCLGENGTTDIELEVVCNSSKPARDSDPSLILTPIE HVEVASQDKHVQMSCFQTASKGSDVLNPAVNLSSKVEKRSNLNIGVAIDCSHNLSEQI AAAVDASNASNTQDPAAKLLTSVEERINHSPSNIETDNVNVRKRKNRVNISPYISGNR RTRSQIIKGSPNESSGVGCSMTPKERASATELQDEQKLSRRITRSFPSMLSHVNERCS SGKETRRKLDFEKVASPVSRERKGEQSVISPESLSLKCSRSGRLLLPRLEFWRNQIAV YDQGVDLSLRKGKSVCQEFHKEIWPLQWNYNA" CDS join(1985416..1985502,1985611..1985696,1985782..1985926, 1986123..1986255,1986384..1986976,1987339..1987420, 1987932..1987990,1988146..1988197,1988636..1988688) /locus_tag="TCM_021968" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY07565.1" /translation="MAPKTRSQKDYNGAQNDSKDGGSSYFQKTVSLHDWWLVKADKDF EGKRLAVAGSTSRELEAVRLFTSAPIVKRYDVFTLETADGICVCIKGFINRHRTEENG FSSEVFTHFSFGFPPYWEEYAKKCLGENGTTDIELEVVCNSSKPARDSDPSLILTPIE HVEVASQDKHVQMSCFQTASKGSDVLNPAVNLSSKVEKRSNLNIGVAIDCSHNLSEQI AAAVDASNASNTQDPAAKLLTSVEERINHSPSNIETDNVNVRKRKNRVNISPYISGNR RTRSQIIKGSPNESSGVGCSMTPKERASATELQDEQKLSRRITRSFPSMLSHVNERCS SGKETRRKLDFEKVASPVSRERKGEQSVISPESLSLKCSRSGRLLLPRLEFWRNQIAV YDQTRKITGIREEADVVKPSGSRSEPQKRQKRLSRVS" CDS join(1985416..1985502,1985611..1985696,1985782..1985926, 1986123..1986255,1986384..1987003) /locus_tag="TCM_021968" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY07567.1" /db_xref="Phytozome:GSVIVT01034205001" /db_xref="TAIR:AT5G02520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HLG5" /translation="MAPKTRSQKDYNGAQNDSKDGGSSYFQKTVSLHDWWLVKADKDF EGKRLAVAGSTSRELEAVRLFTSAPIVKRYDVFTLETADGICVCIKGFINRHRTEENG FSSEVFTHFSFGFPPYWEEYAKKCLGENGTTDIELEVVCNSSKPARDSDPSLILTPIE HVEVASQDKHVQMSCFQTASKGSDVLNPAVNLSSKVEKRSNLNIGVAIDCSHNLSEQI AAAVDASNASNTQDPAAKLLTSVEERINHSPSNIETDNVNVRKRKNRVNISPYISGNR RTRSQIIKGSPNESSGVGCSMTPKERASATELQDEQKLSRRITRSFPSMLSHVNERCS SGKETRRKLDFEKVVSFLVLCF" gene complement(1990037..1993751) /locus_tag="TCM_021969" /note="dbxref CacaoGD:Thecc1EG021969" mRNA complement(join(1990037..1990280,1990367..1990594, 1990939..1991230,1991470..1991602,1991702..1991808, 1991888..1992035,1992824..1992953,1993044..1993127, 1993483..1993751)) /locus_tag="TCM_021969" /product="Origin recognition complex second largest subunit 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s09350.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s09350.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12581t1" CDS complement(join(1990084..1990280,1990367..1990594, 1990939..1991230,1991470..1991602,1991702..1991808, 1991888..1992016)) /locus_tag="TCM_021969" /codon_start=1 /product="Origin recognition complex second largest subunit 2" /protein_id="EOY07568.1" /db_xref="Phytozome:POPTR_0003s09350.1" /db_xref="TAIR:AT2G37560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q38899" /translation="MDFNEVDEEEFGFSRNYFLAKELGSSGKKSAHKLSDINVVDEQE LRAAAANIEPKHQKDITALIKSYKCLYPKWIFELRCGFGLLMYGFGSKKALLEDFAST ALTEYSVVVINGYLQSVNIKQVVIGLAEILWEQLKSKRRNSSGNLPKVQQPFSSLSMD DLLAFLDGSVMECDSFICIVIHNIDGPGLRDSETQQYLAQLASCSNVRVVASIDHVNA ALLWDKKMVHAQFNWYWYHVPTFAPYKVEGLFFPMILAHGSSNQSAKTAAIVLQSLTP NAQSVFRILAEYQLSHPDDEGMAIDNLYSVSRERFLVSSQVTLNAHLTEFKDHELVKT RRNSDGQDCLYIPLATEALEKLLTEIG" gene <2000705..2009913 /locus_tag="TCM_021970" /note="dbxref CacaoGD:Thecc1EG021970" mRNA join(<2000705..2001201,2009769..2009913) /locus_tag="TCM_021970" /product="Histone superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400000792.5" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042812t1" /inference="similar to AA sequence:frave:gene13937" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is medium, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12587t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc9125t1" CDS <2000706..2001143 /locus_tag="TCM_021970" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene13937; paralog of Thecc1EG042812t1" /codon_start=1 /product="Histone superfamily protein isoform 2" /protein_id="EOY07570.1" /db_xref="TAIR:AT5G59970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P62805" /translation="NTPPPTSLFKPPPRIPTPPNSLNSKQKPLSDFQPLETNFHKKMS GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG" mRNA 2000826..2001308 /locus_tag="TCM_021970" /product="Histone superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400000792.5" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042812t1" /inference="similar to AA sequence:Phytozome:POPTR_0168s00200.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc9125t1" CDS 2000832..2001143 /locus_tag="TCM_021970" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042812t1" /codon_start=1 /product="Histone superfamily protein isoform 1" /protein_id="EOY07569.1" /db_xref="Phytozome:POPTR_0168s00200.1" /db_xref="TAIR:AT5G59970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P62805" /translation="MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGV KRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG G" mobile_element 2002355..2005358 /note="source:CACAO_M_E42586_F54_scaffold_5 1 2938" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2005359..2005426) /note="source:scaffold_5_CACTA_0615 2012 2081" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2005764..2007241 /note="source:scaffold_5_CACTA_0615 731 2258" /mobile_element_type="transposon:TIR/CACTA" gene 2009334..2010006 /locus_tag="TCM_021971" /note="dbxref CacaoGD:Thecc1EG021971" mRNA 2009334..2010006 /locus_tag="TCM_021971" /product="Histone superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016576001.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021970t2" /inference="similar to AA sequence:Phytozome:POPTR_0168s00200.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14800t2" CDS 2009399..2009710 /locus_tag="TCM_021971" /note="paralog of Thecc1EG021970t2" /codon_start=1 /product="Histone superfamily protein" /protein_id="EOY07571.1" /db_xref="Phytozome:POPTR_0168s00200.1" /db_xref="TAIR:AT5G59970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P62805" /translation="MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGV KRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG G" gene complement(2011817..2014370) /locus_tag="TCM_021972" /note="dbxref CacaoGD:Thecc1EG021972" mRNA complement(join(2011817..2012213,2012876..2013060, 2013144..2013212,2013809..2013964,2014083..2014370)) /locus_tag="TCM_021972" /product="RNA-binding family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025009001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041883t1" /inference="similar to AA sequence:Phytozome:GSVIVT01025009001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03074t00001" CDS complement(join(2012054..2012213,2012876..2013060, 2013144..2013212,2013809..2013964,2014083..2014235)) /locus_tag="TCM_021972" /note="paralog of Thecc1EG041883t1" /codon_start=1 /product="RNA-binding family protein" /protein_id="EOY07572.1" /db_xref="Phytozome:GSVIVT01025009001" /db_xref="TAIR:AT5G59950.5" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GER3" /translation="MTNPLDMSLDDLIKSNRKSGLTRTRPPLNSGNGPSRRFPNRAAN RTAPYSKPVQAPDTTWQHDMFVDDGAGFPSAAGRASSIETGTKLYISNLDYGVSNEDI KELFSEVGDMKRYSVHYDRSGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKIEI VGTNVATPVALPPATNGKFANPNGVPRSGQGRGSFSGRSRGPGRGARRGRGQGRGQGE KVSAEDLDADLENYHKEAMQTE" gene 2018768..2024648 /locus_tag="TCM_021973" /note="dbxref CacaoGD:Thecc1EG021973" mRNA join(2018768..2019035,2019149..2020171,2021488..2022422, 2022525..2023003) /locus_tag="TCM_021973" /product="Cation/H+ exchanger 20 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30025.m000600" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021975t1" /inference="similar to AA sequence:ricco:30025.m000600" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1366t5" mRNA join(2018776..2019035,2019149..2020171,2021488..2022406, 2022506..2023004) /locus_tag="TCM_021973" /product="Cation/H+ exchanger 20 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30025.m000600" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021975t1" /inference="similar to AA sequence:ricco:30025.m000600" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1466t1; alternateUTRof:Thecc1EG021973t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1366t5" mRNA join(2018847..2019035,2019149..2020171,2021488..2022406, 2022506..2022988,2024456..2024648) /locus_tag="TCM_021973" /product="Cation/H+ exchanger 20 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30025.m000600" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021975t1" /inference="similar to AA sequence:ricco:30025.m000600" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1389t3; alternateUTRof:Thecc1EG021973t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1366t5" mRNA join(2018847..2019035,2019149..2020171,2021488..2022406, 2022506..2022985,2024453..2024648) /locus_tag="TCM_021973" /product="Cation/H+ exchanger 20 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30025.m000600" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021975t1" /inference="similar to AA sequence:ricco:30025.m000600" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1387t2; alternateUTRof:Thecc1EG021973t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1366t5" CDS join(2018856..2019035,2019149..2020171,2021488..2022222) /locus_tag="TCM_021973" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30025.m000600; paralog of Thecc1EG021975t1" /codon_start=1 /product="Cation/H+ exchanger 20 isoform 1" /protein_id="EOY07573.1" /db_xref="TAIR:AT3G53720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M353" /translation="MPFNITSIKTSSNGAWQGDNPLDFAFPLLIVQTTLILVLSRFLA FLLKPLRQPKVIAEIVGGILLGPSAFGRNEDYLHRIFPSWSMPVLETVASIGLIFFLF LVGLELDLSSIRRSGRRAFGIAFAGISLPFVCGIGVAFVLRKTVDGADKVGYGQFLVF MGVALSITAFPVLARILAELKLLTTQLGETAMAAAAFNDVAAWILLALAVALAGNGSG HHKSPLISVWVLLSGVAFVAFMFLVIRPAMKWVACRCSPDRDAVDEAYICLTLAGVMV SGFITDLIGVHAIFGAFIFGLTIPKEGEFAERLIERIEDFVSGLLLPLYFASSGLKTN VAKISGGEAWGLLGLVISTACAGKIIGTFAVAMMYSMPVRESLALGVLMNTKGLVELI VLNIGKEKKVLNDETFAILVLMALFTTFVTTPTVMAIYKPARGFSALARRKLRDLANT DESKDELRVLACLHGLSNVPSIISLIESTRSTKKSQLKLFVMHLVELTERSSSIIMVQ RARRNGLPFIKRLRRGEWQDRVAGAFQAYSQLGRVKVRPTTAISALSSMHEDICHVAE TKQVTMIVLPFHKQWRLEGEQRTVENVGHGWRLVNQRVLKNAPCSVAVLVDRGFGNGG QTPGPTTTESHRVCILSWRAR" CDS join(2018856..2019035,2019149..2020171,2021488..2022222) /locus_tag="TCM_021973" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30025.m000600; paralog of Thecc1EG021975t1" /codon_start=1 /product="Cation/H+ exchanger 20 isoform 1" /protein_id="EOY07574.1" /db_xref="TAIR:AT3G53720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M353" /translation="MPFNITSIKTSSNGAWQGDNPLDFAFPLLIVQTTLILVLSRFLA FLLKPLRQPKVIAEIVGGILLGPSAFGRNEDYLHRIFPSWSMPVLETVASIGLIFFLF LVGLELDLSSIRRSGRRAFGIAFAGISLPFVCGIGVAFVLRKTVDGADKVGYGQFLVF MGVALSITAFPVLARILAELKLLTTQLGETAMAAAAFNDVAAWILLALAVALAGNGSG HHKSPLISVWVLLSGVAFVAFMFLVIRPAMKWVACRCSPDRDAVDEAYICLTLAGVMV SGFITDLIGVHAIFGAFIFGLTIPKEGEFAERLIERIEDFVSGLLLPLYFASSGLKTN VAKISGGEAWGLLGLVISTACAGKIIGTFAVAMMYSMPVRESLALGVLMNTKGLVELI VLNIGKEKKVLNDETFAILVLMALFTTFVTTPTVMAIYKPARGFSALARRKLRDLANT DESKDELRVLACLHGLSNVPSIISLIESTRSTKKSQLKLFVMHLVELTERSSSIIMVQ RARRNGLPFIKRLRRGEWQDRVAGAFQAYSQLGRVKVRPTTAISALSSMHEDICHVAE TKQVTMIVLPFHKQWRLEGEQRTVENVGHGWRLVNQRVLKNAPCSVAVLVDRGFGNGG QTPGPTTTESHRVCILSWRAR" CDS join(2018856..2019035,2019149..2020171,2021488..2022222) /locus_tag="TCM_021973" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30025.m000600; paralog of Thecc1EG021975t1" /codon_start=1 /product="Cation/H+ exchanger 20 isoform 1" /protein_id="EOY07575.1" /db_xref="TAIR:AT3G53720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M353" /translation="MPFNITSIKTSSNGAWQGDNPLDFAFPLLIVQTTLILVLSRFLA FLLKPLRQPKVIAEIVGGILLGPSAFGRNEDYLHRIFPSWSMPVLETVASIGLIFFLF LVGLELDLSSIRRSGRRAFGIAFAGISLPFVCGIGVAFVLRKTVDGADKVGYGQFLVF MGVALSITAFPVLARILAELKLLTTQLGETAMAAAAFNDVAAWILLALAVALAGNGSG HHKSPLISVWVLLSGVAFVAFMFLVIRPAMKWVACRCSPDRDAVDEAYICLTLAGVMV SGFITDLIGVHAIFGAFIFGLTIPKEGEFAERLIERIEDFVSGLLLPLYFASSGLKTN VAKISGGEAWGLLGLVISTACAGKIIGTFAVAMMYSMPVRESLALGVLMNTKGLVELI VLNIGKEKKVLNDETFAILVLMALFTTFVTTPTVMAIYKPARGFSALARRKLRDLANT DESKDELRVLACLHGLSNVPSIISLIESTRSTKKSQLKLFVMHLVELTERSSSIIMVQ RARRNGLPFIKRLRRGEWQDRVAGAFQAYSQLGRVKVRPTTAISALSSMHEDICHVAE TKQVTMIVLPFHKQWRLEGEQRTVENVGHGWRLVNQRVLKNAPCSVAVLVDRGFGNGG QTPGPTTTESHRVCILSWRAR" CDS join(2018856..2019035,2019149..2020171,2021488..2022222) /locus_tag="TCM_021973" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30025.m000600; paralog of Thecc1EG021975t1" /codon_start=1 /product="Cation/H+ exchanger 20 isoform 1" /protein_id="EOY07576.1" /db_xref="TAIR:AT3G53720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M353" /translation="MPFNITSIKTSSNGAWQGDNPLDFAFPLLIVQTTLILVLSRFLA FLLKPLRQPKVIAEIVGGILLGPSAFGRNEDYLHRIFPSWSMPVLETVASIGLIFFLF LVGLELDLSSIRRSGRRAFGIAFAGISLPFVCGIGVAFVLRKTVDGADKVGYGQFLVF MGVALSITAFPVLARILAELKLLTTQLGETAMAAAAFNDVAAWILLALAVALAGNGSG HHKSPLISVWVLLSGVAFVAFMFLVIRPAMKWVACRCSPDRDAVDEAYICLTLAGVMV SGFITDLIGVHAIFGAFIFGLTIPKEGEFAERLIERIEDFVSGLLLPLYFASSGLKTN VAKISGGEAWGLLGLVISTACAGKIIGTFAVAMMYSMPVRESLALGVLMNTKGLVELI VLNIGKEKKVLNDETFAILVLMALFTTFVTTPTVMAIYKPARGFSALARRKLRDLANT DESKDELRVLACLHGLSNVPSIISLIESTRSTKKSQLKLFVMHLVELTERSSSIIMVQ RARRNGLPFIKRLRRGEWQDRVAGAFQAYSQLGRVKVRPTTAISALSSMHEDICHVAE TKQVTMIVLPFHKQWRLEGEQRTVENVGHGWRLVNQRVLKNAPCSVAVLVDRGFGNGG QTPGPTTTESHRVCILSWRAR" gene 2021731..2024723 /locus_tag="TCM_021974" /note="dbxref CacaoGD:Thecc1EG021974" mRNA join(2021731..2022406,2022506..2022988,2024456..2024648) /locus_tag="TCM_021974" /product="Cation/H+ exchanger 20, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30025.m000600" /inference="similar to AA sequence:ricco:30025.m000600" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1389t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13230t2" CDS join(2022149..2022406,2022506..2022895) /locus_tag="TCM_021974" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30025.m000600" /codon_start=1 /product="Cation/H+ exchanger 20, putative isoform 2" /protein_id="EOY07578.1" /db_xref="TAIR:AT3G53720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M353" /translation="MVARLRGLLPLSPTGFAFCLGGPDDREALELGGRMADHPAVKVV VVRFVENEGLERDGVMLRPSPSTSTDKNYCFSTAIMNRAKEKESDEAAVAEFRSKWDG MVEYTEKTSRNFVEEVLGLGQCGDYDLIVVGKGRFPSPMVAKLADRQAEHAELGPIGD LLSSSGRRVLSSVLVIQQHDMAHAEETPVSKFVQHDYDKLKSDGSSGMGEISKVV" mRNA join(2022306..2022406,2022506..2022990,2024381..2024723) /locus_tag="TCM_021974" /product="Cation/H+ exchanger 20, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30025.m000600" /inference="similar to AA sequence:ricco:30025.m000600" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13230t2" CDS join(2022326..2022406,2022506..2022895) /locus_tag="TCM_021974" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30025.m000600" /codon_start=1 /product="Cation/H+ exchanger 20, putative isoform 1" /protein_id="EOY07577.1" /db_xref="TAIR:AT3G53720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M353" /translation="MLRPSPSTSTDKNYCFSTAIMNRAKEKESDEAAVAEFRSKWDGM VEYTEKTSRNFVEEVLGLGQCGDYDLIVVGKGRFPSPMVAKLADRQAEHAELGPIGDL LSSSGRRVLSSVLVIQQHDMAHAEETPVSKFVQHDYDKLKSDGSSGMGEISKVV" gene 2026346..2035840 /locus_tag="TCM_021975" /note="dbxref CacaoGD:Thecc1EG021975" mRNA join(2026346..2027194,2027292..2028317,2030846..2031685, 2031793..2032201,2035553..2035840) /locus_tag="TCM_021975" /product="Monovalent cation:proton antiporter, putative" /inference="alignment:exonerate- protein:2:ricco:30025.m000600.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021973t4" /inference="similar to AA sequence:Phytozome:GSVIVT01034209001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2804t1" CDS join(2026898..2027194,2027292..2028317,2030846..2031685, 2031793..2032107) /locus_tag="TCM_021975" /note="paralog of Thecc1EG021973t4" /codon_start=1 /product="Monovalent cation:proton antiporter, putative" /protein_id="EOY07579.1" /db_xref="Phytozome:GSVIVT01034209001" /db_xref="TAIR:AT3G53720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SP30" /translation="MEQTHQHLRVKLYKNPSALHEFSASEKSVVAINFSLVTTMAING TSVRTSSDGVWQGENPLNYAFPLLILQTTIVLFTSRFLAVLLKPLRQPKVVAEIVGGI LLGPSALGRNKDFLHLVFPAWSTPILESAASIGLLFFLFLVGLELDLTVIRQSGRKAF SIAIAGMSVPFIFGAALSLLLHKAVNGEERVSIGQYILFLGVALSITAFPVLARILAE LKLLTTQVGQTAMAAAAFNDLAAWILLALAVALASNGSSEAHKNPLISVWVLISGVAF VAFMLILVRPLMNWLARQCSPEHDFAIDEAYICLTLSGVMLSGFITDLIGIHAIFGAF IFGLTIPKGEFAAKLIKRIEDFVAGLLLPLYFASSGLKTDVTKIRGVEAWGLLALVIT TACAGKILGTFVAAMLCMVPARESLALGLLMNTKGLVELIVLNIGREKKVLNDEMFAI LVLMALFTTFMTTPAVMAIYKPLPRMTSQTQRRLERAMPPAENAEDELRILACIHGPG NVPSLINLIESIRTTKKSQLKLYVMHLVELTDRSSSIVMVQQAQMNGFPFVNRFRRGK SYDQIAATFGAYGQLGRICIRHLTAISTLSTMHEDICHVAEDRRVAMIILPFHKLWRG VEEETMENFGNGWRGVNQRVLKTAPCSVAVLVDRGYGRESEQVAESANVVPKRVGILF IGGPDDREALELGGMMAEHQPVQVTLVRFLQNDDNKTDKELDEYAVAEFIRRWEGSIK YEEKAVTDIAEAALAIGQSREYELLVVGKGQLPSSTELADNYIEHAELGHVGDVLASD GGMLPSTLVIQQQNAVVAEDVTDVKMI" mobile_element 2028537..2029342 /note="source:CACAO_on_E241_scaffold_112 3 636" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(2028909..2029562) /note="source:CACAO_on_E203_scaffold_1 182 746" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(2029025..2029385) /note="source:MITE_hAT_3 232 573" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(2032207..2032623) /note="source:scaffold_9_CACTA_0946 17764 18225" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2033939..2034365) /note="source:MITE_PIF_Tourist_9 2 424" /mobile_element_type="transposon:TIR/MITE" mobile_element 2034423..2034526 /note="source:INTACT164_F159_scaffold_7-int 285 400" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(2035419..2035871) /locus_tag="TCM_021976" /note="dbxref CacaoGD:Thecc1EG021976" mRNA complement(2035419..2035871) /locus_tag="TCM_021976" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.20 coverage" CDS complement(2035454..2035663) /locus_tag="TCM_021976" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07580.1" /translation="MESRQSEITKDHVPSSPRPSKQIRHVVSRSNSKLNLPLLKFIGQ GKQYAAHDFSTSTELYHDIRSTLRQ" gene 2035976..2037661 /locus_tag="TCM_021977" /note="dbxref CacaoGD:Thecc1EG021977" mRNA join(2035976..2036412,2036492..2036724,2036804..2036927, 2037005..2037030,2037145..2037238,2037369..2037661) /locus_tag="TCM_021977" /product="Monovalent cation:proton antiporter-like protein" /inference="similar to AA sequence:Phytozome:GSVIVT01034209001" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS join(2036200..2036412,2036492..2036724,2036804..2036927, 2037005..2037030,2037145..2037238,2037369..2037590) /locus_tag="TCM_021977" /codon_start=1 /product="Monovalent cation:proton antiporter-like protein" /protein_id="EOY07581.1" /db_xref="Phytozome:GSVIVT01034209001" /db_xref="TAIR:AT3G53720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SP30" /translation="MFLGVALSITAFPVLARILAELKLLTTHVGQTAVAAAAFNDVAA CILLALAVALAGNSSGGGTKSPSISIWYRSPDHDSVMDEACICLTLAGVMISGFMTDL LGIYSIFDAFVYGLTIPKGGEFAAKLKERIEDFVAGLLLPLYNASSGEDFGDVCSGHA VYDPRERVVGIWRSKGLVGHIVLNIRREKKGTVSSTVQKFPMMKYLRFSPDGSLHHFH HNSSSHGHQLVQELDQFALAEFRSNESIQCEERVESNVAEEVLRIAQSRGVRDSSRRK GAAPITYGINRELYVQRVKSWELWQIF" gene complement(2038151..2041925) /locus_tag="TCM_021978" /note="dbxref CacaoGD:Thecc1EG021978" mRNA complement(join(2038151..2038603,2038705..2039206, 2040751..2040840,2040933..2041870)) /locus_tag="TCM_021978" /product="ARF-GAP domain 7 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30025.m000603" /inference="similar to AA sequence:ricco:30025.m000603" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1474t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1474t1" mRNA complement(join(2038208..2038603,2038705..2038907, 2038969..2039206,2040751..2040840,2040933..2041925)) /locus_tag="TCM_021978" /product="ARF-GAP domain 7 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30025.m000603" /inference="similar to AA sequence:Phytozome:POPTR_0006s08420.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc28t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1474t1" CDS complement(join(2038706..2039206,2040751..2040840, 2040933..2041745)) /locus_tag="TCM_021978" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30025.m000603" /codon_start=1 /product="ARF-GAP domain 7 isoform 1" /protein_id="EOY07582.1" /db_xref="TAIR:AT2G37550.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFR8" /translation="MAATRRLRDLQSQPGNKTCVDCNQKNPQWASVSYGIFMCLECSG KHRGLGVHISFVRSVTMDSWSEIQIKKMESGGNEQLNSFLAQYGIPKETDIVTKYNTN AASVYRDRIQALAEGRPWRDPPVVKETLNGGGGNRKPPLSGGGGGGRGSNYGNNGGWD SWDNDDSFRSSSDLRRNQSASDFRGGNNHGGQMGGAPVRSRSTEDMYTRSQLEASAAN KESFFARKMAENESRPDGLPPSQGGKYVGFGSSPMPTQRNNNSQGDVLSVVSQGLGKL SVVAASAAQSAANVVQAGTKEFTSKVKEGGYDTRVNETVNVVTARTSEIGQRTWGIMK GVMAIASQKVEEYTKDGMNWKNENWQRNDSEKNGYYQEFKQENKGWNSTSGGQSSSGG SYNSYSSSSWDDWDSKDNRKKDSTKVTASQSNDGWAGWDDAKDDGYDHFYSGASDKKT VGHNGKSDATWTGGGFL" CDS complement(join(2038855..2038907,2038969..2039206, 2040751..2040840,2040933..2041745)) /locus_tag="TCM_021978" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="ARF-GAP domain 7 isoform 2" /protein_id="EOY07583.1" /db_xref="Phytozome:POPTR_0006s08420.1" /db_xref="TAIR:AT2G37550.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFR8" /translation="MAATRRLRDLQSQPGNKTCVDCNQKNPQWASVSYGIFMCLECSG KHRGLGVHISFVRSVTMDSWSEIQIKKMESGGNEQLNSFLAQYGIPKETDIVTKYNTN AASVYRDRIQALAEGRPWRDPPVVKETLNGGGGNRKPPLSGGGGGGRGSNYGNNGGWD SWDNDDSFRSSSDLRRNQSASDFRGGNNHGGQMGGAPVRSRSTEDMYTRSQLEASAAN KESFFARKMAENESRPDGLPPSQGGKYVGFGSSPMPTQRNNNSQGDVLSVVSQGLGKL SVVAASAAQSAANVVQAGTKEFTSKVKEGGYDTRVNETVNVVTARTSEIGQRTWGIMK GVMAIASQKVEEYTKDGMNWKNENWQRNDSEKNGYYQEFKQENKGWIGMTGTQKTIGR KIVQK" mobile_element complement(2040246..2040349) /note="source:scaffold_5_CACTA_0593 1351 1454" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2040374..2040843) /note="source:scaffold_5_CACTA_0593 720 1197" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2042616..2042682 /note="source:scaffold_3_CACTA_0377 5082 5148" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2043980..2044284) /note="source:scaffold_4_CACTA_0506 3278 3579" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2044266..2045101) /note="source:scaffold_5_CACTA_0607 4006 4843" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2045061..2046360 /note="source:scaffold_9_CACTA_0934 13573 14877" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2046346..2046650) /note="source:scaffold_8_CACTA_0855 2043 2349" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2046651..2047110 /note="source:CACAO_on_SSS_E94_scaffold_6 2 467" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(2046836..2047146) /note="source:INTACT714_F310_scaffold_9-int 10166 10471" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(2047393..2054951) /locus_tag="TCM_021979" /note="dbxref CacaoGD:Thecc1EG021979" mRNA complement(join(2047393..2048086,2048193..2048444, 2048520..2048663,2048758..2048868,2048976..2049098, 2049652..2049783,2049896..2050015,2050100..2050224, 2050311..2050620,2050731..2050988,2051097..2051241, 2051655..2052935,2053044..2053129,2053234..2053623, 2053752..2053815,2053931..2054951)) /locus_tag="TCM_021979" /product="Transducin/WD40 repeat-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01009918001" /inference="similar to AA sequence:Phytozome:GSVIVT01009918001" /note="quality class is strong, express is weak, homology is ortholog strong, intron is weak, protein is complete" mobile_element 2047415..2047574 /note="source:scaffold_7_CACTA_0795 2864 3031" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(2048069..2048086,2048193..2048444, 2048520..2048663,2048758..2048868,2048976..2049098, 2049652..2049783,2049896..2050015,2050100..2050224, 2050311..2050620,2050731..2050988,2051097..2051241, 2051655..2052935,2053044..2053129,2053234..2053623, 2053752..2053815,2053931..2054874)) /locus_tag="TCM_021979" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein" /protein_id="EOY07584.1" /db_xref="Phytozome:GSVIVT01009918001" /translation="MAGNYRFVMDQKDIVRTLITTVGSFTQDRLINKEQRIQHKEQCA ERLAAEDGSTDKDMEVRYSDQAVLANLDWGIEALEEAINTSNVETKHARLDYAEKMLQ VCAMLTSDQKTAGVPNSYLSAWAHLNLSYLWKLRNNVHNPVLHILQMFIIDPFFARID FAPELWKELFLPHMSSIVGWYSEARHRLMMEAIPDSSDLSFTADFDQFFNESLIFSMR PDQVEKLKKLEQLYGESLDENTRLFAKYYKDCMNSDSTASKKVMAPMLPIAEPPMTPL HEVSRSIPDYVKFGPILPKSAGFSPVLKSKHGRREGNNRMMSATSVYSHNTDESAAWD PHDGVPEENEDDSECEPNDASIDYEDQCNEVQSSKGMKMTKDKEIGSALQPKKLRNRT HSPSIFSPLDTPKTSSSKSSSPKPEGNSRKESKSILRLLSCRITDSSDPTSLPISPCK SNDHSISSGESDGEVIEMQKSCRKNRGRAHSMSYDNVNIRTSEHSSQNESSEGNHSCV SLPLSEKLTPQSRPPKDFVCPITGQIFNDPVTLETGQTYERKAIEEWLNRGNTTCPIT RQPLSSSALPKTNYVLKRLITSWKEQHPELAQEISYSETHRNSFSSPLGKEIVLVSPS PKSSKVPGCKSIDDYVNQRSKRFIRAAVATSPTSVISQASVETIINGLKPFVPCLCTS NNLQECEAAVLAIARLWKESKGDAAVHSYLSKPTIVNGFVEILSASLDREVLRTSICI LSELIFTNENVGETLTSVDSDIDCLAALLKNGLAEAAVLIYQLRPAIAQLSSHDLVPS LVQMVLHKNEESDDLPSVMEPSDAAIAMLEQILMGGDEKSRSFNALSVISANGIPRLV KCLDRMEIRRSIISILLCCMRVDKSCRNLIATGIELSYVLELFHAGNDSIRGICIDFL FKLVQLNRRTLSNQMLEIIRTEGAFSTMHTFLVYLQMAPMEHQPAIATLLLQLDLLVE PRKMSIYREEAIEALIEALHRKDFPNQQMIVLDALLSLSGRFTSAGESYIEVWLLKMA GFDQPYNALIKTNLLQKHEKDLNETMEGEEKAAYLWERRVAFVLCNHEKGSIFKALEE CFKSNSLKMAKSSLVIASWLTYMLSTLPDTGVSQAARESLLDEFINVLQSSKNLEEKI LAALALKTFINDPAALEELGKYAKGIYKTLRKLKRNSVVATDILKALMNLSSVNATEL WSCTDIVELDSSTNGEVLCMLHLKGCLITSHSDGSIKVWDSGKRGLRLVQEAREHMKA VTCLYVPSSGDRLYSGSLDKTIRIWALKPEEIHCIQVHDVKEAVHDLSANSKFACFIS QGNGVKVYNWTGTPKHITFNKHVKCLAITGDKIYCGCSGYSIQELDLCSSTWSTFYSG TRKLLGKQTINALHIDDGLLYAGGSAVDGIAGKVFSRSSKAVMGSFPTAFDIQQIAVN NDFIFTATKCGIIEVWLKERVTRVASIKMGSKGHAKITSLASDKDGGMLFAGSSDGKI QAWSLD" mobile_element 2056290..2056363 /note="source:CACAO_M_S_E52577_F51_scaffold_5 1825 1906" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2057678..2058753 /note="source:MITE_hAT_20 1 1076" /mobile_element_type="transposon:TIR/MITE" mobile_element 2059826..2059868 /note="source:CACAO_on_SS_E42_scaffold_2 8456 8498" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(2059827..2059873) /note="source:CACAO_M_E49559_F88_scaffold_7 7671 7717" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(2060631..2060700) /note="source:CACAO_Mariner_E180_scaffold_6 4038 4107" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(2061637..2061781) /note="source:scaffold_4_CACTA_0483 1011 1151" /mobile_element_type="transposon:TIR/CACTA" gene 2061846..2065195 /locus_tag="TCM_021980" /note="dbxref CacaoGD:Thecc1EG021980" mRNA join(2061846..2062690,2063429..2063660,2063771..2063850, 2063950..2064103,2064213..2064291,2064468..2064552, 2064643..2064689,2064781..2065060) /locus_tag="TCM_021980" /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025521001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016274t1" /inference="similar to AA sequence:frave:gene18229" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08073t00001" mobile_element complement(2061884..2061979) /note="source:scaffold_3_CACTA_0377 5517 5601" /mobile_element_type="transposon:TIR/CACTA" CDS join(2062366..2062690,2063429..2063660,2063771..2063850, 2063950..2064103,2064213..2064291,2064468..2064552, 2064643..2064689,2064781..2064954) /locus_tag="TCM_021980" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene18229; paralog of Thecc1EG016274t1" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 1" /protein_id="EOY07585.1" /db_xref="TAIR:AT5G02540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LCE7" /translation="MFFVSSLVFIILCSYLFVFFSPLSLRKQRESFLLCLCLVSFSYC SSGLKVSELGIAPFFEWFFELVETMVGIFSLVTGWPGRSGFGSASTAEEVTEGIDGSN LTAIITGGASGIGLETSRVLALRKVHVLIAARNLKAANEAKESILTENETARIDVLEL DLCSIKSIRAFADNFLALNRRLNILINNAGIMFCPFQLSQDGIEVQFATNHIGHFLLT NLLLDNMKNTAKATGIQGRIVNLSSIAHSHCYKNGIRFDKISEKSGYNDKRAYGQSKL ANILHANELSRRLQEEGVNITVNSVHPGLIMTPLFRHSAILMNILKFFSFFLWKNVPQ GAATTCYVALHPSLKGVTGKYFAECNEMTPSSYARDEALAKRLWDFSNKLIHSVSKP" mRNA join(<2062666..2062690,2063429..2063660,2063771..2063850, 2063950..2064103,2064213..2064298,2064475..2064552, 2064643..2064689,2064781..2065195) /locus_tag="TCM_021980" /product="Putativepod-specific dehydrogenase SAC25 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025521001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016274t1" /inference="similar to AA sequence:frave:gene18229" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc830t6; inference alignment:Newbler:10:TSA:cgbaB_g08073t00001" CDS join(<2062666..2062690,2063429..2063660,2063771..2063850, 2063950..2064103,2064213..2064298,2064475..2064552, 2064643..2064689,2064781..2064954) /locus_tag="TCM_021980" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene18229; paralog of Thecc1EG016274t1" /codon_start=1 /product="Putativepod-specific dehydrogenase SAC25 isoform 2" /protein_id="EOY07586.1" /db_xref="TAIR:AT2G37540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LCE7" /translation="SNLTAIITGGASGIGLETSRVLALRKVHVLIAARNLKAANEAKE SILTENETARIDVLELDLCSIKSIRAFADNFLALNRRLNILINNAGIMFCPFQLSQDG IEVQFATNHIGHFLLTNLLLDNMKNTAKATGIQGRIVNLSSIAHSHCYKNGIRFDKIS EKSGYNDKRAYGQSKLANILHANELSRRLQVESVNITVNSVHPGLIMTPLFRHSAILM NILKFFSFFLWKNVPQGAATTCYVALHPSLKGVTGKYFAECNEMTPSSYARDEALAKR LWDFSNKLIHSVSKP" gene complement(2065063..2065711) /locus_tag="TCM_021981" /note="dbxref CacaoGD:Thecc1EG021981" mRNA complement(2065063..2065711) /locus_tag="TCM_021981" /product="Forkhead box protein G1, putative" /inference="alignment:exonerate- protein:2:ricco:29999.m000213" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041884t1" /inference="similar to AA sequence:ricco:29999.m000213" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1472t3" CDS complement(2065331..2065693) /locus_tag="TCM_021981" /note="dbxref ricco:29999.m000213; paralog of Thecc1EG041884t1" /codon_start=1 /product="Forkhead box protein G1, putative" /protein_id="EOY07587.1" /db_xref="TAIR:AT2G37530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IQY1" /translation="MLLALFTSLLHRLFLRWPVLLYAATWTVLLTAVVAIASFSPELA FVSAISQSSSFSKECGIEGSVRVPIDVPGEKLCLPGHLFGRSKIDWIVPPVFAAVVVT GSAWVVRGMGLWEFDETH" gene complement(2066155..2069877) /locus_tag="TCM_021982" /note="dbxref CacaoGD:Thecc1EG021982" mRNA complement(join(2066155..2066383,2066520..2066643, 2066740..2066852,2067280..2067370,2067476..2067726, 2068109..2068153,2068302..2068415,2068512..2068575, 2068841..2069004,2069183..2069877)) /locus_tag="TCM_021982" /product="Major facilitator superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29999.m000212" /inference="similar to AA sequence:ricco:29999.m000212" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05470t00001" CDS complement(join(2066210..2066383,2066520..2066643, 2066740..2066852,2067280..2067370,2067476..2067726, 2068109..2068153,2068302..2068415,2068512..2068575, 2068841..2069004,2069183..2069356)) /locus_tag="TCM_021982" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29999.m000212" /codon_start=1 /product="Major facilitator superfamily protein isoform 1" /protein_id="EOY07588.1" /db_xref="TAIR:AT3G09470.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94AA1" /translation="MAIESMDTRDEEAPLVADISQSETPKTRTRDVHILSCAFLLVFL AYGAAQNLETTVNAEGNLGTVSLGILYVSFAFFSLFASLVVRVLGSKNAVVLGTTGYW LYIAANLKPTWYTMVPVSVYLGFAASIIWVGEGTYLTSIARSHARDSNLHEATVIGNF NGEFWAMFALHQFVGNLITLAVLQNGAEGSSSNTTLLFIVFLCSMTLGTILMCFLCKI NDKEEKVSADSSVSFSSAVVSRLKSVITPLLDIRMLLIIPLIAYSGLQQAFVWADYTK DVVNPILGEAGVGGAMAVYGAFDAICSLAAGRLTSGLKSITFIVCGGAFFQAVIFLWL LLKYSATSGVLGIVYPLLMAALLGIGDGVLNTQLSALLALLFKHDTEGAFAQLKVWQS SAIAVVFFLSPAITLQTMVMIMLVAIIVSLVSFLFLTVKVEKAFS" mRNA complement(join(2066360..2066383,2066520..2066852, 2067280..2067370,2067476..2067726,2068109..2068153, 2068302..2068415,2068512..2068575,2068841..2069004, 2069183..2069761)) /locus_tag="TCM_021982" /product="Major facilitator superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29999.m000212" /inference="similar to AA sequence:Phytozome:GSVIVT01025523001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc845t3; inference alignment:Newbler:10:TSA:cgbaP2_g05470t00001" CDS complement(join(2066691..2066852,2067280..2067370, 2067476..2067726,2068109..2068153,2068302..2068415, 2068512..2068575,2068841..2069004,2069183..2069356)) /locus_tag="TCM_021982" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Major facilitator superfamily protein isoform 2" /protein_id="EOY07589.1" /db_xref="Phytozome:GSVIVT01025523001" /db_xref="TAIR:AT3G09470.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94AA1" /translation="MAIESMDTRDEEAPLVADISQSETPKTRTRDVHILSCAFLLVFL AYGAAQNLETTVNAEGNLGTVSLGILYVSFAFFSLFASLVVRVLGSKNAVVLGTTGYW LYIAANLKPTWYTMVPVSVYLGFAASIIWVGEGTYLTSIARSHARDSNLHEATVIGNF NGEFWAMFALHQFVGNLITLAVLQNGAEGSSSNTTLLFIVFLCSMTLGTILMCFLCKI NDKEEKVSADSSVSFSSAVVSRLKSVITPLLDIRMLLIIPLIAYSGLQQAFVWADYTK DVVNPILGEAGVGGAMAVYGAFDAICSLAAGRLTSGLKSITFIVCGGAFFQAVIFLWL LLKYRLVQCILIKLSIFNFH" gene complement(2069890..2073241) /locus_tag="TCM_021983" /note="dbxref CacaoGD:Thecc1EG021983" mRNA complement(2069890..2073241) /locus_tag="TCM_021983" /product="Pentatricopeptide repeat (PPR) superfamily protein" /inference="alignment:exonerate-protein:2:frave:gene18222" /inference="similar to AA sequence:frave:gene18222" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1759t1" CDS complement(2070432..2072690) /locus_tag="TCM_021983" /note="dbxref frave:gene18222" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein" /protein_id="EOY07590.1" /db_xref="TAIR:AT3G53700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LFF1" /translation="MSSSTCFKCYPWSYSPSLPFFQKPTSYLSISFSSTQQNQTRFPL SHNFTPTQLLDTLRRQNDESSALRLFDWASKQPNFTPNLSIYEELLTRLGKHGSFDSM KHILQQMKLSGCELRRGTFLILVESYADFDLYDEILDVVELMESEFGLKSDTHFYNFL LNVLVDGNKLKLVEAAHNGMVSRGVKPDVSTFNILIKALCNAHQIRPAILMMEEMPSY GLSPDEKTFTTIMQGFIDEGNLDGALRIREQMVEAGQQVTNVTVNVLVHGFCKEGRIE EALDFIQIMTNEGFYPDQFTFNTLVNGLCKAGYVKHALEIMDAMLQDGFDLDIFTYNS LISGLCKIGEIEEAVEILNQMMLRDCSPNTVTYNTLISTLCKENQVEEATELARVLTS KGIFPDVCTFNSLIQGLCLTRNHSIAMELFEEMKNKGCQPDEFTYNMLIDSLCCRGKL EEALSLLKEMESGGCARNVITYNTLIDGFCKNKRIQDAEEIFDEMEIQGVSRNSVTYN TLIDGLCKSRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAVDIVQTMT SNGCEPDIVTYGTLIGGLCKAGRVDVATRVLRTVQMKGMALTPHAYNPVIQALFRRKR TNEAMRLYREMLEKGDPPDAISYKIVFRGLCNGGGPIGEAVDFVVEMIQKGFLPEFSS FYMLAEGLCSLSMEDTLVKLIDMVMEKANCSDSEVSIIRGFLRIRKFQDALAILGNIL DSKKPKKSFSLR" mobile_element 2073222..2074164 /note="source:CACAO_MITE_S250_scaffold_10 1 945" /mobile_element_type="transposon:TIR/MITE" gene complement(2074884..2078781) /locus_tag="TCM_021984" /note="dbxref CacaoGD:Thecc1EG021984" mRNA complement(join(2074884..2075602,2075694..2075949, 2077080..2077251,2078648..2078781)) /locus_tag="TCM_021984" /product="Actin depolymerizing factor 4 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0474s00200.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041889t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s24330.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05650t00001" mRNA complement(join(2074969..2075602,2075694..2075959, 2077080..>2077184)) /locus_tag="TCM_021984" /product="Actin depolymerizing factor 4 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0474s00200.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041889t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s24330.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05650t00001; inference alignment:Newbler:10:TSA:cgbaP1_g05650t00001" CDS complement(join(2075452..2075602,2075694..2075949, 2077080..2077251,2078648..2078650)) /locus_tag="TCM_021984" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG041889t1" /codon_start=1 /product="Actin depolymerizing factor 4 isoform 1" /protein_id="EOY07591.1" /db_xref="Phytozome:POPTR_0001s24330.1" /db_xref="TAIR:AT5G59890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7UC71" /translation="MDIKSPLGRVTEIKGPFNIPFLPPRHRRSSLSIYIFSSSSSSVD RDPLSSFPNKPKRDASGMAVHDECKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGE PAQSYEDFAKSLPADECRYAVYDFDFLTPENVQKSRIFFIAWSPDTSRVRSKMIYASS KDRFKRELDGIQVELQATDPTEMGLDVIKSRAS" CDS complement(join(2075452..2075602,2075694..2075959, 2077080..>2077184)) /locus_tag="TCM_021984" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG041889t1" /codon_start=1 /product="Actin depolymerizing factor 4 isoform 2" /protein_id="EOY07592.1" /db_xref="Phytozome:POPTR_0001s24330.1" /db_xref="TAIR:AT5G59890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7UC71" /translation="LVIGGALFLSTFSPPLLPPSIAIPYRRFQTNRKEMANAASGMAV HDECKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPAQSYEDFAKSLPADECRYA VYDFDFLTPENVQKSRIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVELQATDP TEMGLDVIKSRAS" gene complement(2079573..2080211) /locus_tag="TCM_021985" /note="dbxref CacaoGD:Thecc1EG021985" mRNA complement(2079573..2080211) /locus_tag="TCM_021985" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.84 coverage" CDS complement(2079868..2080125) /locus_tag="TCM_021985" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07593.1" /translation="MSQRPNRHQRKPSQSVFVSFEDLSAPLSDNATDNKLPAPPTNQA PPSLPVRARALPPPPPTAAPAPAETKENVAKDDNEPKNATS" mobile_element complement(2082040..2082490) /note="source:CACAO_Again_on_E34_scaffold_1 700 1126" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(2082211..2082537) /note="source:CACAO_on_E33_A_scaffold_3 2871 3165" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 2083936..2092060 /locus_tag="TCM_021986" /note="dbxref CacaoGD:Thecc1EG021986" mRNA join(2083936..2084330,2084431..2085291,2085393..2085461, 2085564..2085762,2086605..2086686,2087249..2087323, 2087539..2087607,2087693..2087774,2087853..2087912, 2088001..2088053,2088132..2088298,2088698..2088866, 2089190..2089247,2089341..2089397,2089495..2089743, 2090446..2090507,2090781..2090837,2090970..2091063, 2091318..2091458,2091545..2092060) /locus_tag="TCM_021986" /product="Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g19440.1" /inference="similar to AA sequence:Phytozome:Glyma13g19440.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:PASA:2:TSA:puevd3b021283t1a2; alternateUTRof:Thecc1EG021986t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1502t5" mRNA join(2083936..2084325,2084427..2085291,2085393..2085461, 2085564..2085762,2086605..2086686,2087249..2087323, 2087539..2087607,2087693..2087774,2087853..2087912, 2088001..2088053,2088132..2088298,2088698..2088866, 2089190..2089247,2089341..2089397,2089495..2089743, 2090446..2090507,2090781..2090837,2090970..2091063, 2091318..2091458,2091545..2092060) /locus_tag="TCM_021986" /product="Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g19440.1" /inference="similar to AA sequence:Phytozome:Glyma13g19440.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1502t5" mRNA join(2083936..2084325,2084427..2085291,2085393..2085461, 2085564..2085762,2086605..2086686,2087249..2087323, 2087539..2087607,2087693..2087774,2087856..2087912, 2088001..2088053,2088132..2088298,2088698..2088866, 2089190..2089247,2089341..2089397,2089495..2089743, 2090446..2090507,2090781..2090837,2090970..2091063, 2091318..2091458,2091545..2092060) /locus_tag="TCM_021986" /product="Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g19440.1" /inference="similar to AA sequence:Phytozome:Glyma13g19440.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:PASA:2:TSA:puevd3b021283t1a3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1502t5" CDS join(2084635..2085291,2085393..2085461,2085564..2085762, 2086605..2086686,2087249..2087323,2087539..2087607, 2087693..2087774,2087853..2087912,2088001..2088053, 2088132..2088298,2088698..2088866,2089190..2089247, 2089341..2089397,2089495..2089743,2090446..2090507, 2090781..2090837,2090970..2091063,2091318..2091458, 2091545..2091631) /locus_tag="TCM_021986" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain, putative isoform 1" /protein_id="EOY07594.1" /db_xref="Phytozome:Glyma13g19440.1" /db_xref="TAIR:AT2G37520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IQY0" /translation="MEEEGACLESSTEEIMENVNSTKPELKRDLEFVEPEPQSEPEAS PNKKQSKEVSNEDIQSEVSNPIVSPKENTSNFYDISSRNQVGCGEVTSLCSGNSSSEE TLSDSSETGDTSGVVSSSHVTLEIPKHLSSSGIRKITFKFSKRKEDDNETSVSVGGEC MNPENGSIEWSSRYSCAPNMELKMSKKVVPSNYPTNVKKLLGTGILDGARVKYISISM ARVLDGIVHAGGYLCGCSFCNFSKVLSAHEFEQHAGAKTRHPNNHIFLENGKPIYNII QELKNAPVSSLDEVIKDVAGSSINEESFQDWKASLQQSNGKVEAEKKYNMKFSSLPNS RRCFGKSVGERMGPISSALMQNNPVRQPNLCVSSSVLQQKRTAEGVTKKRDNDLHRLL FMPQGLPDGAELAYFIKGQKLLEGYKQGNGIVCGCCLKELSPSQFEAHAGMAARRQPY RHIYTSNGVTLHDIALSLANGQRITTGYSDDMCALCGDAGDLLLCCECPQAFHPACLN LQHLPEGDWHCANCADGHGPGRKAVSGARPILIRLKRVVKAPEFEIGGCAICRAFDFN ASEFNDRTVILCDQCEKEFHVGCLRDSGRCDLKEIPKDKWFCCDDCNMIYEVLQSSVS NGVQIIPTSFSDIIRRKHLEKGLFIDGAIDCVQWRIMSGKSRYPEHLPLLSSAAAIFR ECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSVVVSAGLLRIFGQEVAE LPIVATSREHQGKGYFQALFACIERLLSSLNVENLVLPAAEEALSIWTKKFGFTKMSE QQLFEYQKQLQLTIFKGTSMLEKKVPPMAE" CDS join(2084635..2085291,2085393..2085461,2085564..2085762, 2086605..2086686,2087249..2087323,2087539..2087607, 2087693..2087774,2087853..2087912,2088001..2088053, 2088132..2088298,2088698..2088866,2089190..2089247, 2089341..2089397,2089495..2089743,2090446..2090507, 2090781..2090837,2090970..2091063,2091318..2091458, 2091545..2091631) /locus_tag="TCM_021986" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain, putative isoform 1" /protein_id="EOY07595.1" /db_xref="Phytozome:Glyma13g19440.1" /db_xref="TAIR:AT2G37520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IQY0" /translation="MEEEGACLESSTEEIMENVNSTKPELKRDLEFVEPEPQSEPEAS PNKKQSKEVSNEDIQSEVSNPIVSPKENTSNFYDISSRNQVGCGEVTSLCSGNSSSEE TLSDSSETGDTSGVVSSSHVTLEIPKHLSSSGIRKITFKFSKRKEDDNETSVSVGGEC MNPENGSIEWSSRYSCAPNMELKMSKKVVPSNYPTNVKKLLGTGILDGARVKYISISM ARVLDGIVHAGGYLCGCSFCNFSKVLSAHEFEQHAGAKTRHPNNHIFLENGKPIYNII QELKNAPVSSLDEVIKDVAGSSINEESFQDWKASLQQSNGKVEAEKKYNMKFSSLPNS RRCFGKSVGERMGPISSALMQNNPVRQPNLCVSSSVLQQKRTAEGVTKKRDNDLHRLL FMPQGLPDGAELAYFIKGQKLLEGYKQGNGIVCGCCLKELSPSQFEAHAGMAARRQPY RHIYTSNGVTLHDIALSLANGQRITTGYSDDMCALCGDAGDLLLCCECPQAFHPACLN LQHLPEGDWHCANCADGHGPGRKAVSGARPILIRLKRVVKAPEFEIGGCAICRAFDFN ASEFNDRTVILCDQCEKEFHVGCLRDSGRCDLKEIPKDKWFCCDDCNMIYEVLQSSVS NGVQIIPTSFSDIIRRKHLEKGLFIDGAIDCVQWRIMSGKSRYPEHLPLLSSAAAIFR ECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSVVVSAGLLRIFGQEVAE LPIVATSREHQGKGYFQALFACIERLLSSLNVENLVLPAAEEALSIWTKKFGFTKMSE QQLFEYQKQLQLTIFKGTSMLEKKVPPMAE" CDS join(2084635..2085291,2085393..2085461,2085564..2085762, 2086605..2086686,2087249..2087323,2087539..2087607, 2087693..2087774,2087856..2087912,2088001..2088053, 2088132..2088298,2088698..2088866,2089190..2089247, 2089341..2089397,2089495..2089743,2090446..2090507, 2090781..2090837,2090970..2091063,2091318..2091458, 2091545..2091631) /locus_tag="TCM_021986" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain, putative isoform 3" /protein_id="EOY07596.1" /db_xref="Phytozome:Glyma13g19440.1" /db_xref="TAIR:AT2G37520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IQY0" /translation="MEEEGACLESSTEEIMENVNSTKPELKRDLEFVEPEPQSEPEAS PNKKQSKEVSNEDIQSEVSNPIVSPKENTSNFYDISSRNQVGCGEVTSLCSGNSSSEE TLSDSSETGDTSGVVSSSHVTLEIPKHLSSSGIRKITFKFSKRKEDDNETSVSVGGEC MNPENGSIEWSSRYSCAPNMELKMSKKVVPSNYPTNVKKLLGTGILDGARVKYISISM ARVLDGIVHAGGYLCGCSFCNFSKVLSAHEFEQHAGAKTRHPNNHIFLENGKPIYNII QELKNAPVSSLDEVIKDVAGSSINEESFQDWKASLQQSNGKVEAEKKYNMKFSSLPNS RRCFGKSVGERMGPISSALMQNNPVRQPNLCVSSSVLQQKRTAEGVTKKRDNDLHRLL FMPQGLPDGAELAYFIKGQLLEGYKQGNGIVCGCCLKELSPSQFEAHAGMAARRQPYR HIYTSNGVTLHDIALSLANGQRITTGYSDDMCALCGDAGDLLLCCECPQAFHPACLNL QHLPEGDWHCANCADGHGPGRKAVSGARPILIRLKRVVKAPEFEIGGCAICRAFDFNA SEFNDRTVILCDQCEKEFHVGCLRDSGRCDLKEIPKDKWFCCDDCNMIYEVLQSSVSN GVQIIPTSFSDIIRRKHLEKGLFIDGAIDCVQWRIMSGKSRYPEHLPLLSSAAAIFRE CFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSVVVSAGLLRIFGQEVAEL PIVATSREHQGKGYFQALFACIERLLSSLNVENLVLPAAEEALSIWTKKFGFTKMSEQ QLFEYQKQLQLTIFKGTSMLEKKVPPMAE" mobile_element 2090845..2090895 /note="source:CACAO_Mariner_E36_scaffold_2 1180 1230" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene 2093420..2096655 /locus_tag="TCM_021987" /note="dbxref CacaoGD:Thecc1EG021987" mRNA join(2093420..2093595,2095997..2096065,2096198..2096655) /locus_tag="TCM_021987" /product="RNA-binding family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025527001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031183t1" /inference="similar to AA sequence:Phytozome:GSVIVT01025527001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaL_g10947t00001" CDS join(2093481..2093595,2095997..2096065,2096198..2096433) /locus_tag="TCM_021987" /note="paralog of Thecc1EG031183t1" /codon_start=1 /product="RNA-binding family protein" /protein_id="EOY07597.1" /db_xref="Phytozome:GSVIVT01025527001" /db_xref="TAIR:AT2G37510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10N84" /translation="MAFASRFRRILTGPSPLCSQFASVRLNSTLTSPKLFISGLSRET TDEQFNEAFTPFGQIVEAKVIRDRATGRSKGFGFVTYTAIEEAEKAREEMNAKFLHGW VIFVDPAKPREPRAPPRSESESSEFGFRTNKTVGWCG" gene 2097421..2102435 /locus_tag="TCM_021988" /note="dbxref CacaoGD:Thecc1EG021988" mRNA join(2097421..2097905,2098072..2098197,2098312..2098435, 2098595..2098668,2098901..2098945,2099157..2099207, 2099305..2099373,2099556..2099614,2099955..2100024, 2100238..2100318,2100396..2100482,2100597..2100719, 2101120..2101182,2101451..2101528,2101600..2101745, 2102058..2102128,2102225..2102435) /locus_tag="TCM_021988" /product="Arginine biosynthesis protein ArgJ family" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025529001" /inference="similar to AA sequence:Phytozome:GSVIVT01025529001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1710t3" CDS join(2097846..2097905,2098072..2098197,2098312..2098435, 2098595..2098668,2098901..2098945,2099157..2099207, 2099305..2099373,2099556..2099614,2099955..2100024, 2100238..2100318,2100396..2100482,2100597..2100719, 2101120..2101182,2101451..2101528,2101600..2101745, 2102058..2102128,2102225..2102307) /locus_tag="TCM_021988" /codon_start=1 /product="Arginine biosynthesis protein ArgJ family" /protein_id="EOY07598.1" /db_xref="Phytozome:GSVIVT01025529001" /db_xref="TAIR:AT2G37500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZUR7" /translation="MYSCAPHFVSLKFSGMFSPKIISSICSSKADFKVFAAASDVNEA SSYIPAAPILLPDGVWKQIPGGVTAAKGFKAAGLYGGLRAKGEKPDLALVTCDVDANV AGAFTTNVVAAAPVVYCKNVLSSTKTARAVLINAGQANAATGDAGYQDVLECANALAT ILQIRPEEVLIESTGVIGHRIKKEALLSSLPRLVNSLSPSIQGGDSAAVAITTTDLVS KSVAIEYEVRGTSVRVGGMAKGSGMIHPNMATMLGVITTDALVESDVWRKMVQVAVSR SFNQITVDGDTSTNDTVIAFASGLSGSNWITSMNSYEALLLQTGLDAVMQGLAKSIAW DGEGATCLIEVTVTGAEGEAEAGKIARSVAASSLVKAAVYGRDPNWGRIAAAAGYSGI SFDPNNLQILLGDIMLMDGGQPLAFDRVAASNYLINAGETHGTVEIKITVGNGPGYGK AWGCDLSYDYVKINAEYTT" gene complement(2102657..2104701) /locus_tag="TCM_021989" /note="dbxref CacaoGD:Thecc1EG021989" mRNA complement(join(2102657..2103112,2103297..2103618, 2104187..2104701)) /locus_tag="TCM_021989" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene18216" /inference="similar to AA sequence:frave:gene18216" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13257t2" CDS complement(join(2102690..2103112,2103297..2103587)) /locus_tag="TCM_021989" /note="dbxref frave:gene18216" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07599.1" /translation="MEVLGSREVDDLSDIKQAILHACLNEDDNDGDDTSDVENLLEQG HQSKPPQKCLGKCASFSSAVSPPEDDDELETALRRIFTEDTVQSPYSRSISLPTPLKL VSALKGSREKQGLSPKKLSVTWAPDVYDPPPTSVLHTVRGKKQQKLKKNNDKKKNGKK GQKGNNSRGSGGKDNKQFRRGGGNADRIYKPQEVQGRVVNTSGELDGFTVGKPDPYCG SSFLKESPTRMHYSVAEAL" mobile_element 2104205..2104411 /note="source:scaffold_6_CACTA_0709 1990 2196" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2106256..2106526 /note="source:CACAO_on_E69_scaffold_9 725 1002" /mobile_element_type="transposon:TIR/hAT" gene 2106986..2108260 /locus_tag="TCM_021990" /note="dbxref CacaoGD:Thecc1EG021990" mRNA join(2106986..2107500,2107988..2108260) /locus_tag="TCM_021990" /product="Histone H2A 12" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g40900.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041890t2" /inference="similar to AA sequence:Phytozome:GSVIVT01025019001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13319t1" CDS join(2107291..2107500,2107988..2108239) /locus_tag="TCM_021990" /note="paralog of Thecc1EG041890t2" /codon_start=1 /product="Histone H2A 12" /protein_id="EOY07600.1" /db_xref="Phytozome:GSVIVT01025019001" /db_xref="TAIR:AT5G02560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KCF4" /translation="MDAGAKVKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLK KGRYSQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEEL GKLLAGVTIAHGGVLPNINPVLLPKKNDKAPKEPKSPSKATKSPKKSPKKA" gene complement(2109647..2110561) /locus_tag="TCM_021991" /note="dbxref CacaoGD:Thecc1EG021991" mRNA complement(2109647..2110561) /locus_tag="TCM_021991" /product="Histone superfamily protein" /inference="alignment:exonerate- protein:2:ricco:28872.m000242" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041892t1" /inference="similar to AA sequence:ricco:29589.m001271" /note="quality class is strong, express is medium, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc134t13" CDS complement(2109685..2110104) /locus_tag="TCM_021991" /note="dbxref ricco:29589.m001271; paralog of Thecc1EG041892t1" /codon_start=1 /product="Histone superfamily protein" /protein_id="EOY07601.1" /db_xref="TAIR:AT3G45980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2DP48" /translation="MAPKAEKKPAEKKPVAEKAPASAEKRPKAEKKISKEGGDKKKKK IKKSTETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKP TITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS" gene complement(2111281..2113509) /locus_tag="TCM_021992" /note="dbxref CacaoGD:Thecc1EG021992" mRNA complement(join(2111281..2111600,2112816..2113509)) /locus_tag="TCM_021992" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene18213" /inference="similar to AA sequence:frave:gene18213" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13243t2" CDS complement(join(2111594..2111600,2112816..2113393)) /locus_tag="TCM_021992" /note="dbxref frave:gene18213" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07602.1" /db_xref="TAIR:AT3G53630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VXU5" /translation="MSSFTNTTNLDNLLLQTLMGRLQIRPPNNNPFLTQSLEDLLLDA ANVSDSDSEDNSKTQLAKEESKLEKEIIRIILLGKTDPLKPNSGQAVTINEHHICITF HEEKESDYRVWEWHGHIMLFDEENGYTPEYIYGNYFERLQGKPRVARDEKEKEEEEEE KVGNLGLRELIDGGGESGGGRILHRNISAGSPRF" mobile_element 2114149..2114197 /note="source:scaffold_3_CACTA_0393 1006 1055" /mobile_element_type="transposon:TIR/CACTA" gene complement(2114318..2117645) /locus_tag="TCM_021993" /note="dbxref CacaoGD:Thecc1EG021993" mRNA complement(join(2114318..2114684,2114917..2114998, 2115096..2115216,2115305..2115370,2115655..2115762, 2115868..2115933,2116262..2116290,2116401..2116539, 2117509..2117645)) /locus_tag="TCM_021993" /product="Pyrophosphorylase 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025621001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005017t1" /inference="similar to AA sequence:Phytozome:GSVIVT01025621001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13259t1" CDS complement(join(2114642..2114684,2114917..2114998, 2115096..2115216,2115305..2115370,2115655..2115762, 2115868..2115933,2116262..2116290,2116401..2116536)) /locus_tag="TCM_021993" /note="paralog of Thecc1EG005017t1" /codon_start=1 /product="Pyrophosphorylase 4" /protein_id="EOY07603.1" /db_xref="Phytozome:GSVIVT01025621001" /db_xref="TAIR:AT3G53620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I2Z6" /translation="MAPPIETPTKPSDSHYSSHPPLNERILSSMTRRSVAAHPWHDLE IGPGAPMVFNCVIEIGKGSKVKYELDKKTGLIKVDRVLYSSVVYPHNYGFIPRTLCED NDPLDVLIIMQEPVQPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHFNDIKD LPPHRLAEIRRFFEDYKKNENKEVAVNDFLPATTAYEAIQHSMNLYADYIVESLRR" mobile_element complement(2122283..2122457) /note="source:scaffold_8_CACTA_0855 3293 3462" /mobile_element_type="transposon:TIR/CACTA" gene 2123873..2126997 /locus_tag="TCM_021994" /note="dbxref CacaoGD:Thecc1EG021994" mRNA join(2123873..2124093,2124224..2124335,2124955..2125027, 2125136..2125236,2125950..2126015,2126262..2126359, 2126490..2126552,2126643..2126735,2126874..2126997) /locus_tag="TCM_021994" /product="Ras-related small GTP-binding family protein" /inference="alignment:exonerate- protein:2:ricco:28449.m000019.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042824t1" /inference="similar to AA sequence:Phytozome:Glyma02g10450.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13262t2" CDS join(2124263..2124335,2124955..2125027,2125136..2125236, 2125950..2126015,2126262..2126359,2126490..2126552, 2126643..2126735,2126874..2126957) /locus_tag="TCM_021994" /note="paralog of Thecc1EG042824t1" /codon_start=1 /product="Ras-related small GTP-binding family protein" /protein_id="EOY07604.1" /db_xref="Phytozome:Glyma02g10450.1" /db_xref="TAIR:AT5G59840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P28186" /translation="MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSF ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS FNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSRGQALADEYGIKFFETSA KTNLNVEEVFFSIARDIKQRLADSDSRAEPQTIKINQPDQAAGATVAAQKSACCGS" mobile_element complement(2125252..2125288) /note="source:scaffold_5_CACTA_0591 8034 8070" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2128258..2128407) /note="source:CACAO_M_E70107_F62_scaffold_10 5119 5287" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2128547..2128635) /note="source:INTACT43_F19_scaffold_6-int 260 349" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2129286..2129388 /note="source:CACAO_Mariner_E11_scaffold_1 988 1094" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 2129298..2130113 /note="source:CACAO_MITE135_scaffold_9 1 831" /mobile_element_type="transposon:TIR/MITE" gene complement(2129988..2131173) /locus_tag="TCM_021995" /note="dbxref CacaoGD:Thecc1EG021995" mRNA complement(join(2129988..2130724,2130975..2131173)) /locus_tag="TCM_021995" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.39 coverage" CDS complement(join(2130304..2130724,2130975..2131093)) /locus_tag="TCM_021995" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07605.1" /translation="MGRKAKNLKAGVYFWLVELVLRPSWRKTIYEVNEKNPIDLLVAH NCLWPVGCRSSSIDIGPRLISGPRRCVALICAIVTTSLLGLQIVTFSPTQSKRRPRCL VASLHHKSSTGSPYLVVDKYLKAIHDYPMCVICPQTYSTPQHACAQFLCLQCSHYLEQ KRSSEMWFEYKLMVSLSLS" gene 2133601..2135845 /locus_tag="TCM_021996" /note="dbxref CacaoGD:Thecc1EG021996" mRNA join(2133601..2133945,2134068..2134130,2134218..2134334, 2134443..2134686,2134790..2134951,2135056..2135207, 2135299..2135845) /locus_tag="TCM_021996" /product="Nodulin MtN21 /EamA-like transporter family protein" /inference="alignment:exonerate- protein:2:TAIR:AT2G37460.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042833t1" /inference="similar to AA sequence:TAIR:AT2G37460.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1558t3" CDS join(2133746..2133945,2134068..2134130,2134218..2134334, 2134443..2134686,2134790..2134951,2135056..2135207, 2135299..2135536) /locus_tag="TCM_021996" /note="paralog of Thecc1EG042833t1" /codon_start=1 /product="Nodulin MtN21 /EamA-like transporter family protein" /protein_id="EOY07606.1" /db_xref="TAIR:AT2G37460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZUS1" /translation="MENNQGHGSLGRFKPYFAAIFLQVGLSGMDVLSKAALNQGMSNY ALVVYRHAIATVVMVPFAAVLDKKVRPRMTLPIFIKIMVLGLLEPVIDQNLYYVGMKY TTATFASAMYNILPAITFVMAWVLRLEKVNLRSIRGHGKVVGTLATVAGAMVMTLMKG PVLELFWTKGSTNHQAAAQNGTDIHHTIKGGLMITVGCFSYACFVILQAVTLETYPAE LSLTVWICLMGTLEGTIAALIMERGNAAIWAIKWDTKLLTAAYSGIVCSGLAYYIQGV IMKDRGPVFVTAFSPLCMVIVAIMSTFILAEQMYLGRVIGAIIIIVGLYLVLWGKSNE YKSPPPLIQQQIEPAKIDMAKEEKESFDHQPIIIDEPSRETSIRDEKLHENSDLVPV" gene complement(2134720..2146095) /locus_tag="TCM_021999" /note="dbxref CacaoGD:Thecc1EG021999" mRNA complement(join(2134720..2135016,2142551..2142642, 2142835..2143033,2143126..2143194,2143274..2144284, 2144372..2144551,2145219..2145250)) /locus_tag="TCM_021999" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s08280.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042835t2" /inference="similar to AA sequence:Phytozome:POPTR_0006s08280.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00661t00003; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc861t4_C2; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc873t9" mobile_element 2136800..2142094 /note="source:CACAO_M_E34381_F118_scaffold_5 1 5295" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2137504..2141911 /locus_tag="TCM_021998" /note="dbxref CacaoGD:Thecc1EG021998" mRNA join(2137504..2138214,2138605..2139296,2139606..2141911) /locus_tag="TCM_021998" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Sb10g020018.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001555t1" /inference="similar to AA sequence:Phytozome:Sb10g020018.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc2845t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1507t1" CDS join(2138013..2138214,2138605..2139296,2139606..2141660) /locus_tag="TCM_021998" /note="paralog of Thecc1EG001555t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07611.1" /db_xref="Phytozome:Sb10g020018.1" /translation="MSISRLYERNGQPTRTPISEVRRSKPPDSPLQHHTRFVKKLTRV EMEERRLKGLCFNCDEPFVRGHQCVNWLKTLGPILWDFTNMWMSFTKLGKQIELYGIK TSKPAQNAEIQVVTAEDYHADLQRLLRDFASLFQEPTSLPPSRTCDHRIILKPGTKPI AVRPYRYPHAQKDEIEQQCSEMLKQGIIQPSQSPFSSLVLLVPKSNGTRHMCIDYREL NAKIIKDKFLIPMIEKLLEELFGAKYFSKLDLWSGYHQIQMNEADVEKMAFRTHHGHF EFRVMPFKLTNEPSTFQALMNEFVHNYGSIATPFIAMLRKNSFIWTDQSSQAFKKLKA AMTTAPVLALLDFSQPFTTECDASNTRIGVVLLHNDKPIAFFNRAMTMRHRHLPAYEK ELIGLVKAIKHYRSYLWGKHFIVCTDHYSLKFLLEQKLLTPPQQHWLGEILGYSFSVE YKVGRYNSVADALSRIDSDGAVLLVISMPQLSLFDEIHHKQQNSPEVQSLISSVQEGI AAEPWSFKQRLLFYKHRVYLAPNSLSIQTVLTALHNQGHEGYQKTLFRIAKDFHWNDM KHHIRDFIHACSICQRHKTKTLQPAGLLQLLPVPKHVCSDISLDFVEGLPNSHGTNVI LVVVDHFSKYCHLLPVAHPYSAVSIARLFFDNIFKLHGLLETMVNDRDVTFTSAFWKE LFCLSDTKLCFNSAYHPQSDDQTKVVNRTVEMNLRCFSSAHPTKWMEWLSWAEYSYNT SFHSSLQTTPFKAMYGRPPPRLLSYCLGISKLDAVDQALQSRDMILKSLRQNLLHAQH KMKTIYDSKHHDIEFQVGDKVLLRLQPYRQLSLANRRHQQLLPKFYGPFTILQRLGPM AYKLEFPPSTKLHLVFHVSCLKVFHEGDNPVSATLPIGFLAESMPLPLAIIDRQVNRN IQEVLIHLQDTSLAEASWETVSSMKERFPHFPLEDKRDLKEGSNVSTSDNPLVYKQFT HGKYKLNQHI" mRNA complement(join(2142046..2142640,2142835..2143033, 2143126..2143194,2143274..2144551,2145219..2145456, 2145776..2146095)) /locus_tag="TCM_021999" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s08280.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042835t2" /inference="similar to AA sequence:Phytozome:POPTR_0006s08280.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc873t5; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc873t9; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc861t4_C2" mRNA complement(join(2142112..2142435,2142551..2142642, 2142835..2143033,2143126..2143194,2143274..2144551, 2145219..2145456,2145776..2145988)) /locus_tag="TCM_021999" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s08280.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042835t2" /inference="similar to AA sequence:Phytozome:POPTR_0006s08280.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc861t4_C2" mRNA complement(join(2142266..2142577,2143123..2143194, 2143274..2144551,2145219..2145456)) /locus_tag="TCM_021999" /product="Uncharacterized protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s08280.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042835t2" /inference="similar to AA sequence:Phytozome:POPTR_0006s08280.1" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc879t10; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc873t9; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc861t4_C2" CDS complement(join(2142572..2142642,2142835..2143033, 2143126..2143194,2143274..2144284,2144372..2144551, 2145219..2145221)) /locus_tag="TCM_021999" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG042835t2" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY07609.1" /db_xref="Phytozome:POPTR_0006s08280.1" /db_xref="TAIR:AT5G13660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HQY7" /translation="MSFQNQGFWMSKGAGCINDGEMAYDNSSRIEPKRSHQWFMDGPE TDSFPNKKQAVGVPTTNLFDTETARAVNFDDQSIPSGSTEKVDMGRKVNEDLFANDSS FGLSMSHTMEDPRSGLNYGGFRKVKVCQVKDSENVMSVSMAHAYDRVDKNSVSTDHGY NKVEDGNISMGLAYNKGDENLMSIGDSYERENNVFISMGQSYNKSEDSITVGQTYKES TSAIAMSNTFDKGDNNFMSMGQTFNRTDDNSITVGHTYGKGDDSAISISHSYNRGDNN NLSIGPSYSKGESTIISFGGYDDDEDTNQTGRLISSYDLLMGQPSVQRSDAPNEKEMV KSNADALVPTGNITASGMEVSRKKEDPKTAKKVSSNNFPSNVRSLLSTGMLDGVPVKY IAWSREKELRGVIKGSGYQCGCQTCNFSKVINAYEFERHAGCKTKHPNNHIYFENGKT IYGIVQELRSTPQTMLFDVIQTITGSPINQKSFRLWKESFLAATRELQRIYGKDEGKK LS" CDS complement(join(2142572..2142642,2142835..2143033, 2143126..2143194,2143274..2144551,2145219..2145221)) /locus_tag="TCM_021999" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042835t2" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY07607.1" /db_xref="Phytozome:POPTR_0006s08280.1" /db_xref="TAIR:AT5G13660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HQY7" /translation="MSFQNQGFWMSKGAGCINDGEMAYDNSSRIEPKRSHQWFMDGPE TDSFPNKKQAVGVPTTNLFSGVLNSHVSQWGNSSSFHSISGHFAERLFDTETARAVNF DDQSIPSGSTEKVDMGRKVNEDLFANDSSFGLSMSHTMEDPRSGLNYGGFRKVKVCQV KDSENVMSVSMAHAYDRVDKNSVSTDHGYNKVEDGNISMGLAYNKGDENLMSIGDSYE RENNVFISMGQSYNKSEDSITVGQTYKESTSAIAMSNTFDKGDNNFMSMGQTFNRTDD NSITVGHTYGKGDDSAISISHSYNRGDNNNLSIGPSYSKGESTIISFGGYDDDEDTNQ TGRLISSYDLLMGQPSVQRSDAPNEKEMVKSNADALVPTGNITASGMEVSRKKEDPKT AKKVSSNNFPSNVRSLLSTGMLDGVPVKYIAWSREKELRGVIKGSGYQCGCQTCNFSK VINAYEFERHAGCKTKHPNNHIYFENGKTIYGIVQELRSTPQTMLFDVIQTITGSPIN QKSFRLWKESFLAATRELQRIYGKDEGKKLS" CDS complement(join(2142572..2142577,2143123..2143194, 2143274..2144551,2145219..2145221)) /locus_tag="TCM_021999" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG042835t2" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY07610.1" /db_xref="Phytozome:POPTR_0006s08280.1" /db_xref="TAIR:AT5G13660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HQY7" /translation="MSFQNQGFWMSKGAGCINDGEMAYDNSSRIEPKRSHQWFMDGPE TDSFPNKKQAVGVPTTNLFSGVLNSHVSQWGNSSSFHSISGHFAERLFDTETARAVNF DDQSIPSGSTEKVDMGRKVNEDLFANDSSFGLSMSHTMEDPRSGLNYGGFRKVKVCQV KDSENVMSVSMAHAYDRVDKNSVSTDHGYNKVEDGNISMGLAYNKGDENLMSIGDSYE RENNVFISMGQSYNKSEDSITVGQTYKESTSAIAMSNTFDKGDNNFMSMGQTFNRTDD NSITVGHTYGKGDDSAISISHSYNRGDNNNLSIGPSYSKGESTIISFGGYDDDEDTNQ TGRLISSYDLLMGQPSVQRSDAPNEKEMVKSNADALVPTGNITASGMEVSRKKEDPKT AKKVSSNNFPSNVRSLLSTGMLDGVPVKYIAWSREKELRGVIKGSGYQCGCQTCNFSK VS" CDS complement(join(2142618..2142640,2142835..2143033, 2143126..2143194,2143274..2144551,2145219..2145221)) /locus_tag="TCM_021999" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042835t2" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY07608.1" /db_xref="Phytozome:POPTR_0006s08280.1" /db_xref="TAIR:AT5G13660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HQY7" /translation="MSFQNQGFWMSKGAGCINDGEMAYDNSSRIEPKRSHQWFMDGPE TDSFPNKKQAVGVPTTNLFSGVLNSHVSQWGNSSSFHSISGHFAERLFDTETARAVNF DDQSIPSGSTEKVDMGRKVNEDLFANDSSFGLSMSHTMEDPRSGLNYGGFRKVKVCQV KDSENVMSVSMAHAYDRVDKNSVSTDHGYNKVEDGNISMGLAYNKGDENLMSIGDSYE RENNVFISMGQSYNKSEDSITVGQTYKESTSAIAMSNTFDKGDNNFMSMGQTFNRTDD NSITVGHTYGKGDDSAISISHSYNRGDNNNLSIGPSYSKGESTIISFGGYDDDEDTNQ TGRLISSYDLLMGQPSVQRSDAPNEKEMVKSNADALVPTGNITASGMEVSRKKEDPKT AKKVSSNNFPSNVRSLLSTGMLDGVPVKYIAWSREKELRGVIKGSGYQCGCQTCNFSK VINAYEFERHAGCKTKHPNNHIYFENGKTIYGIVQELRSTPQTMLFDVIQTITGSPIN QKSFRLWKVLFSCHS" gene complement(2147447..2163103) /locus_tag="TCM_022000" /note="dbxref CacaoGD:Thecc1EG022000" mRNA complement(join(2147447..2148326,2149133..2149281, 2149497..2149605,2149711..2149946,2150073..2150553, 2150640..2150834,2150937..2151041,2151423..2151510, 2151836..2151907,2152020..2152104,2152212..2152252, 2153384..2153787,2162895..2163103)) /locus_tag="TCM_022000" /product="Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400041360" /inference="similar to AA sequence:frave:gene18206" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1524t2" CDS complement(join(2148056..2148326,2149133..2149281, 2149497..2149605,2149711..2149946,2150073..2150553, 2150640..2150834,2150937..2151041,2151423..2151510, 2151836..2151907,2152020..2152104,2152212..2152241)) /locus_tag="TCM_022000" /note="dbxref frave:gene18206" /codon_start=1 /product="Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2" /protein_id="EOY07612.1" /db_xref="TAIR:AT2G37440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WT19" /translation="MRTEMRKISKSSWPKVIARKWLNIPSGADEFHSDYAINGQIDER RKSCSDDEYYVIVPEDFSEGWLKEAAGGIKPSKIMPEAAPVTDSHNLRMFVGTWNVGG KSPHEGLNLRDWLRSPAPADIYVLGRVEKVVFLLKASTIQHGCGERTAVDAVLTCFTA HNQLELSPTWSIFIYPSALAFNLVFTCLRRKQFQEIVPLNAGNVLGAEDNGPAAKWLS LIRQALNSNRSDQELAQYYSNSTEARSPSSPQLELQAGLKPRISFSDLLSIEDEFGKE DFERLLYLNSSSSEEGSPSPTCMSGSPNQQRFCLAASKQMVGLFLCVWVRADLYKHIS SLKVSCVGRGIMGYLGNKGSISISMTLYQTTFCFVCTHLTSGEKEGDEIRRNSDVAEI LRRTRFSQSFRDLLKRTRFSNSYRDLRQPLPPESILDHDKIIWLGDLNYRLAAGSGDT HALLKKNDWQALLEKDQLRIEQRAGRVFKGWEEGRIYFAPTYKYLTDSDDYVVQLSNS KEKRRTPAWCDRILWKGEGLKQIWYSRGESRFSDHRPVYSLFSVHVNPANKPISTARS CSPRFSAKTALSSACAAKVQAEELLLIPRAQSCINATSRF" mobile_element 2160477..2160734 /note="source:CACAO_MITE_S193_scaffold_8 1 259" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(2168456..2168544) /note="source:scaffold_2_CACTA_0245 3553 3635" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2168466..2168486) /note="source:CACAO_M_E42040_F98_scaffold_5 647 678" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2168487..2168541 /note="source:scaffold_5_CACTA_0584 1971 2025" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2168542..2168561) /note="source:CACAO_M_E42040_F98_scaffold_5 612 646" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(2168565..2171449) /locus_tag="TCM_022001" /note="dbxref CacaoGD:Thecc1EG022001" mRNA complement(join(2168565..2169153,2169285..2169455, 2171282..2171449)) /locus_tag="TCM_022001" /product="C2H2 and C2HC zinc fingers superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g35740.1" /inference="similar to AA sequence:Phytozome:Glyma19g35740.1" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS complement(join(2168592..2169153,2169285..2169379)) /locus_tag="TCM_022001" /codon_start=1 /product="C2H2 and C2HC zinc fingers superfamily protein, putative" /protein_id="EOY07613.1" /db_xref="Phytozome:Glyma19g35740.1" /db_xref="TAIR:AT2G37430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SLD4" /translation="MFISLDIAHCLRPFLAAKGGALFDSLFINSFHFASKPKKSFSRK IRLTFVDMKGGRESEESVANCLMLLSHGLETKRTLDHSVEDVFECKTCHRRFPSFQAL GGHRASHKRPRLMGESQKADGSKFLSLAITKPKKHECAICGKKFDLGQALGGHMRKHR ASIYESFSPFPVVDPDLPVLSRSNSKRIMRLDLNLTPLENDLKALFGKMAPKIDNLRL " mobile_element complement(2171489..2171554) /note="source:CACAO_on_E33_A_scaffold_3 796 862" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 2171655..2172464 /locus_tag="TCM_022002" /note="dbxref CacaoGD:Thecc1EG022002" mRNA 2171655..2172464 /locus_tag="TCM_022002" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:28637.m000203" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13242t1" CDS 2171860..2172123 /locus_tag="TCM_022002" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07614.1" /translation="MGIMYQMQRSTLGALVPNSTCKSFSNGVKFKSKHGIRLVLFDLF NTGTVETTGNGEKLLSFTAALCLLIWPPKACPMENSWPQMEHS" gene complement(2173387..2180928) /locus_tag="TCM_022003" /note="dbxref CacaoGD:Thecc1EG022003" mRNA complement(join(2173387..2174512,2174629..2174780, 2174870..2174979,2175074..2175175,2175395..2175600, 2175681..2175764,2175844..2176002,2176092..2176199, 2176293..2176454,2176539..2176714,2177467..2177553, 2177633..2177744,2177826..2177906,2177985..2178038, 2178258..2178334,2178423..2178492,2178571..2178727, 2178821..2178918,2179126..2179264,2179355..2179692, 2179907..2180062,2180165..2180294,2180404..2180928)) /locus_tag="TCM_022003" /product="ATP binding microtubule motor family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:28637.m000204" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041959t1" /inference="similar to AA sequence:ricco:28637.m000204" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1553t3" mRNA complement(join(2174060..2174512,2174629..2174780, 2174870..2174979,2175074..2175175,2175395..2175600, 2175681..2175764,2175844..2176002,2176092..2176199, 2176293..2176454,2176539..2176714,2177467..2177554, 2177691..2177744,2177826..2177906,2177985..2178038, 2178258..2178334,2178423..2178492,2178571..2178727, 2178821..2178918,2179126..2179264,2179355..2179692, 2179907..2180062,2180165..2180294,2180404..2180713)) /locus_tag="TCM_022003" /product="ATP binding microtubule motor family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:28637.m000204" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041959t1" /inference="similar to AA sequence:ricco:28637.m000204" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1553t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1553t3" CDS complement(join(2174291..2174512,2174629..2174780, 2174870..2174979,2175074..2175175,2175395..2175600, 2175681..2175764,2175844..2176002,2176092..2176199, 2176293..2176454,2176539..2176714,2177467..2177554, 2177691..2177744,2177826..2177906,2177985..2178038, 2178258..2178334,2178423..2178492,2178571..2178727, 2178821..2178918,2179126..2179264,2179355..2179692, 2179907..2180062,2180165..2180294,2180404..2180585)) /locus_tag="TCM_022003" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28637.m000204; paralog of Thecc1EG041959t1" /codon_start=1 /product="ATP binding microtubule motor family protein isoform 2" /protein_id="EOY07616.1" /db_xref="TAIR:AT2G37420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WQJ7" /translation="MMSLTPDQFRKVGMGGVTPSPSPFLTPRPERRRADSRGPDWSSN RHDRDKEVNVQVLLRCRPLSEDEQRMNVPRVISCNEHKREVTVLQNVANKQVDRVFTF DKVFGPKAQQRTIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDL PAEAGVIPRAVRQIFDTLEAQNADYSMKVTFLELYNEEITDLLAPEENSRYAEDKQRK PISLMEDGKGCVVVRGLEEEAVYSANEIYTLLERGAAKRRTADTLLNKRSSRSHSVFS ITVHIKESAVGDEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRV INALVEHSAHIPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETLSTLDYAYRA KNIKNKPEANQKMSKAVLLKDLYLEMERMKEDVRAARDKNGVYIPHERFAQEEAEKKA RMEKIEQLENDLNLSEKQADKFRELYITEQEQRLDLESDLKDCKINLEKSRKELLDLQ ENHRENSLIERAKELRTDLQHASEDINSLFATLENKDKMEAENRSIVLTFGSQLDQHL KDLHKTILGSISQQHQQLRSMEEQAHSFLASKCDATQALESRIKNMTETHASGVAAMK ELANTMQRKGSSDLEQMSSTFSSQIAATEQFLGTAVLEAKEVIEDLQNSLNEQKELLL FSARQQEEGLHRNLISAQEISKATVDFMTDITNQASKLMTTLEETQTKKSQQLTNFGN RFKEEAVREEKQALEKIAAILATLTSNRTAMVEEASRNMKDTGIQDNTILQQQISVLQ QVTADAGKEMSKYMEKMESHFMEDTFSVAESRDIMEDGLKECSKRVNDSRQQWENAKS YINELNISSLAEIKSTVKENIRINQTVHEELLSAFSSMDAEFGARTGDIMAAINDSLL RDHQSKKEIDSLTNLCLDHLETVQEKHGESISNIRSEAEKCLVKDYLVDHHTNTTPKK RDIVVPSLASIEEMRTPSLENLKEEENNSEKRSKWGNSDSKIHQQIAREAFSPNRTPF ADVN" CDS complement(join(2174291..2174512,2174629..2174780, 2174870..2174979,2175074..2175175,2175395..2175600, 2175681..2175764,2175844..2176002,2176092..2176199, 2176293..2176454,2176539..2176714,2177467..2177553, 2177633..2177744,2177826..2177906,2177985..2178038, 2178258..2178334,2178423..2178492,2178571..2178727, 2178821..2178918,2179126..2179264,2179355..2179692, 2179907..2180062,2180165..2180294,2180404..2180585)) /locus_tag="TCM_022003" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28637.m000204; paralog of Thecc1EG041959t1" /codon_start=1 /product="ATP binding microtubule motor family protein isoform 1" /protein_id="EOY07615.1" /db_xref="TAIR:AT2G37420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WQJ7" /translation="MMSLTPDQFRKVGMGGVTPSPSPFLTPRPERRRADSRGPDWSSN RHDRDKEVNVQVLLRCRPLSEDEQRMNVPRVISCNEHKREVTVLQNVANKQVDRVFTF DKVFGPKAQQRTIYDQAIVPIVNEVLDGFNCTVFAYGQTGTGKTYTMEGGMRNKGGDL PAEAGVIPRAVRQIFDTLEAQNADYSMKVTFLELYNEEITDLLAPEENSRYAEDKQRK PISLMEDGKGCVVVRGLEEEAVYSANEIYTLLERGAAKRRTADTLLNKRSSRSHSVFS ITVHIKESAVGDEELIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRV INALVEHSAHIPYRDSKLTRLLRDSLGGKTKTCIIATISPSAHSLEETLSTLDYAYRA KNIKNKPEANQKMSKAVLLKDLYLEMERMKEDVRAARDKNGVYIPHERFAQEEAEKKA RMEKIEQLENDLNLSEKQADKFRELYITEQEQRLDLESDLKDCKINLEKSRKELLDLQ ENHRAAILMLKEKEFVISKFLGSENSLIERAKELRTDLQHASEDINSLFATLENKDKM EAENRSIVLTFGSQLDQHLKDLHKTILGSISQQHQQLRSMEEQAHSFLASKCDATQAL ESRIKNMTETHASGVAAMKELANTMQRKGSSDLEQMSSTFSSQIAATEQFLGTAVLEA KEVIEDLQNSLNEQKELLLFSARQQEEGLHRNLISAQEISKATVDFMTDITNQASKLM TTLEETQTKKSQQLTNFGNRFKEEAVREEKQALEKIAAILATLTSNRTAMVEEASRNM KDTGIQDNTILQQQISVLQQVTADAGKEMSKYMEKMESHFMEDTFSVAESRDIMEDGL KECSKRVNDSRQQWENAKSYINELNISSLAEIKSTVKENIRINQTVHEELLSAFSSMD AEFGARTGDIMAAINDSLLRDHQSKKEIDSLTNLCLDHLETVQEKHGESISNIRSEAE KCLVKDYLVDHHTNTTPKKRDIVVPSLASIEEMRTPSLENLKEEENNSEKRSKWGNSD SKIHQQIAREAFSPNRTPFADVN" mobile_element complement(2179037..2179136) /note="source:CACAO_M_S_E52697_F28_scaffold_5 6049 6115" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2179070..2179174) /note="source:scaffold_5_CACTA_0608 8715 8809" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2181039..2181152) /note="source:scaffold_1_CACTA_0008 14046 14159" /mobile_element_type="transposon:TIR/CACTA" gene complement(2181286..2184309) /locus_tag="TCM_022004" /note="dbxref CacaoGD:Thecc1EG022004" mRNA complement(join(2181286..2181713,2181965..2182038, 2182133..2182193,2182374..2182461,2182803..2182982, 2183061..2183118,2183329..2183399,2183636..2183803, 2183876..2184271)) /locus_tag="TCM_022004" /product="Diaminopimelate epimerase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025612001" /inference="similar to AA sequence:ricco:28637.m000206" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1607t1; inference alignment:Newbler:10:TSA:cgbaB_g01282t00001" mRNA complement(join(2181331..2181712,2181965..2182038, 2182134..2182193,2182374..2182458,2182803..2182982, 2183061..2183118,2183329..2183399,2183636..2183803, 2183876..2184309)) /locus_tag="TCM_022004" /product="Diaminopimelate epimerase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025612001" /inference="similar to AA sequence:ricco:28637.m000206" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01282t00001" CDS complement(join(2181596..2181712,2181965..2182038, 2182134..2182193,2182374..2182458,2182803..2182982, 2183061..2183118,2183329..2183399,2183636..2183803, 2183876..2184148)) /locus_tag="TCM_022004" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28637.m000206" /codon_start=1 /product="Diaminopimelate epimerase family protein isoform 1" /protein_id="EOY07617.1" /db_xref="TAIR:AT3G53580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LFG2" /translation="MAIAATISLSLALQTRRFSVAGAAPFRSTPSLHFDCLLSNLSLK NPSFRVSASSMSIGTPDKISTTSFLDRRESGFVHFVKYHGLGNDFILVDNRDSTEPRI TPEQAVKLCDRNFGVGADGVIFAMPGTNGTDYTMRIFNSDGSEPEMCGNGVRCFARFI AELENLHGKQSFTVYTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTKLRANKDQSVV KSDLNVDGVIWNVTCVSMGNPHCVTFGTKGSQNLTVDELNLAAVGPKFEHHEMFPART NTEFVEVFSSSHLKMRVWERGAGATLACGTGACAVVVAAVLEGRAGRSCTVDLPGGTL EIEWREEDNHVYMTGPAEVVFYGSVPL" CDS complement(join(2181640..2181713,2181965..2182038, 2182133..2182193,2182374..2182461,2182803..2182982, 2183061..2183118,2183329..2183399,2183636..2183803, 2183876..2184148)) /locus_tag="TCM_022004" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28637.m000206" /codon_start=1 /product="Diaminopimelate epimerase family protein isoform 2" /protein_id="EOY07618.1" /db_xref="TAIR:AT3G53580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LFG2" /translation="MAIAATISLSLALQTRRFSVAGAAPFRSTPSLHFDCLLSNLSLK NPSFRVSASSMSIGTPDKISTTSFLDRRESGFVHFVKYHGLGNDFILVDNRDSTEPRI TPEQAVKLCDRNFGVGADGVIFAMPGTNGTDYTMRIFNSDGSEPEMCGNGVRCFARFI AELENLHGKQSFTVYTGAGLIVPEIQDDGKVKVDMGEPILKASDVPTKLRANKDQSVV KSDLNVDGVIWNVTCVSMGNPHCVTFGTKGSQQNLTVDELNLAAVGPKFEHHEMFPAR TNTEFVEVFSSSHLKMRVWERGAGSNTGLWNWSLRCGGCSCSRRTCWEGVARSICLAA RWRLNGGRKTIMYT" mobile_element 2185082..2185260 /note="source:CACAO_PIF_E144_scaffold_10 2179 2372" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(2186110..2186215) /note="source:scaffold_3_CACTA_0396 894 1006" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2186494..2186700 /note="source:CACAO_on_E216_scaffold_4 4 189" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(2186694..2187213) /note="source:CACAO_on_E6_scaffold_1 3 527" /mobile_element_type="transposon:TIR/hAT" gene complement(2188091..2190313) /locus_tag="TCM_022005" /note="dbxref CacaoGD:Thecc1EG022005" mRNA complement(join(2188091..2188843,2188942..2189103, 2189193..2190017,2190131..2190313)) /locus_tag="TCM_022005" /product="F-box family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022008t1" /inference="similar to AA sequence:Phytozome:GSVIVT01025608001" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1535t1" CDS complement(join(2188430..2188843,2188942..2189103, 2189193..2190017,2190131..2190202)) /locus_tag="TCM_022005" /note="paralog of Thecc1EG022008t1" /codon_start=1 /product="F-box family protein, putative" /protein_id="EOY07619.1" /db_xref="Phytozome:GSVIVT01025608001" /db_xref="TAIR:AT2G39490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TQF4" /translation="MDHKFVSNSFELENTSSNRLSRDKGRMEMEDGRHDFISSLPQDI LKRIISLLPLDEAVRTSTFSAVWRSLWVPVLVPCHEEAEGELKEIISMLSKSYDSHRI WKLYLSYQDSKKAASETKYDVFVLATKGVEQELILEFSKREKEAKDFHLKFKPTCPAS GAVSFSTLKMLRLRSVNNLGKDLTSALFSSCKFLESLELEKCSGLQSLDIEANDNLQS LKVLDCPDMVNIRVSARHLRSFWYQGVLPQVQLKNTLDLVEVMLDLRDGFCSCEFDCE DVVSFLTSLKEIEILTISSWLLEWLCSGGVIFSRLELRFNKLKELSWMEHSGMNKTKR DSLACFLNICPAMEKLLIKVDPGLNSISCPYFHQYLHEPHLWMDDATVKSNTSRLENL KIVEFWGYKSEEDQFLLLELLLEKANMLESITVTSPENHSWEVAKIPQSQLKQTWNTS NQRKQNAVFSLFRAFFMAVFEEIHVVFCPEKAEICNLSWF" mobile_element complement(2191844..2192416) /note="source:scaffold_1_CACTA_0009 13257 13830" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2192126..2192812 /note="source:CACAO_M_E33977_F20_scaffold_4 5405 6158" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2192765..2192888) /note="source:CACAO_M_E33977_F20_scaffold_4 14823 14937" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2192790..2192941 /note="source:CACAO_M_E33977_F20_scaffold_4 5877 6025" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2192841..2201632 /note="source:CACAO_Mutator_E1012_scaffold_5 1 8792" /mobile_element_type="transposon:TIR/Mutator" mobile_element 2196333..2202232 /note="source:scaffold_9_CACTA_0922 1668 7658" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2198777..2203218 /note="source:CACAO_M_E33977_F20_scaffold_4 12106 16548" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2203213..2203521 /note="source:scaffold_4_CACTA_0506 6795 7087" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2204403..2204477) /note="source:INTACT446_F218_scaffold_9-int 7289 7367" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(2204523..2204744) /note="source:INTACT446_F218_scaffold_9-int 7174 7371" /mobile_element_type="retrotransposon:LTR/Unclassified" gene complement(2204809..2209193) /locus_tag="TCM_022008" /note="dbxref CacaoGD:Thecc1EG022008" mRNA complement(join(2204809..2205641,2205838..2205996, 2206101..2206949,2208837..2209193)) /locus_tag="TCM_022008" /product="F-box family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025608001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022005t1" /inference="similar to AA sequence:Phytozome:GSVIVT01025608001" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2610t1" CDS complement(join(2205237..2205641,2205838..2205996, 2206101..2206940)) /locus_tag="TCM_022008" /note="paralog of Thecc1EG022005t1" /codon_start=1 /product="F-box family protein, putative" /protein_id="EOY07620.1" /db_xref="Phytozome:GSVIVT01025608001" /db_xref="TAIR:AT2G39490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TQF4" /translation="MEEEKCDFISSLPSDILRRIISFLALEQAMKTSALSTVWTSLWV PVEVNLREANREVKDIVDLFSKPYDSHQVWKLCLSFQDSKKAPSEMKGEIIALAAKGV DEELYLDFSERQKEQVKNLCLKLEPCCSCHSLLSHPSQAATFSSTLKMLHVRRLSNLS KDLISGLFSSSQFLESLKLEGCNGLQSLDIEANHFLRSLKVIDCPDMVNISVSAINLR SFWYQGILPHQVHLKNTSDLVEVMFDLRNGSGPSEFDCEDVLSLLASLKDIEVLRVSG WLLEWLCSGGVIFRRLDINFNKLKQLSWMDSAMDNTKRDSLACFLNICPSLEKLIIEI DPNRGPLPCPYFHHYWHEPHLWMDYTSVMSNTSQLENLKVVEFMGYTNEEDQSLLIDL LLKKACLLESVTVTSPQHHSWKVAKIPDDQSQLNQTWQSSNQQKQNAVLSLIKFIIRI QNTLFTRIAPSHKNATP" gene 2209923..2215360 /locus_tag="TCM_022009" /note="dbxref CacaoGD:Thecc1EG022009" mRNA join(2209923..2210016,2210801..2211621,2212970..2215360) /locus_tag="TCM_022009" /product="Pentatricopeptide repeat superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025607001" /inference="similar to AA sequence:Phytozome:GSVIVT01025607001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1441t1" CDS join(2209990..2210016,2210801..2211621,2212970..2214518) /locus_tag="TCM_022009" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein" /protein_id="EOY07621.1" /db_xref="Phytozome:GSVIVT01025607001" /db_xref="TAIR:AT5G42450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BSF7" /translation="MYSLWNNNESMLELKSRHLCYNYELESMREALLGEMGMHQETTN VLYQLLSDACQERDEAREQLKRSVAEISELKKLVNKLLPSNSAEISSVVSHVQPDGRN QEILKRNLDIRGSDTVSEAHNNYSDDSSAANSISRTLFNASLTDSSNLALLKKSFVQD SGSHIRMGKFSSKDMAVNPASKVITTLVKGKPLPEKGRFLEAVLDTAPLLETLMITGQ LPKWRNPPSLASNLIANDDHGLIKQRAVISSKSATPVCTMLNYKKCSNSFNFESLGHA SMQRRFKLLLVAAATIFRRICTAARSSLIDTQKASNIHIHSSPDSPSPILNAPQVFDE VSDLDVVSATSIIGSFSKQHQHKEAILLFSRMLFNDIRPNEFTFGTVIHSSTLLKDLN IGKQLHACAIKMGLNTNVFVGSASLDFYSKLSTIEEAKRVFEDTHQPNVVSYTTLISG YMRNKRFEEALWLFKETPERNVVSWNAMIGGFSQTGHNEEAVNLFTRMLREGVMPTQT TFPCAIIAAANIAAHGMGKSFHACVFKCLGDQLNVFTGNALISFYAKCGSMEDSLLVF NKLHSRNIVSWNALICGYAQNGRGKEAIEFFEKMLVSGFRPNDVTLLGLLWACNHAGL VAEGYSYFNKARAEEPNLLKPEHYACVVDLLSRSGHFKEAEEFIQHLPFEPGIGFWKA LLGGCQIHSNTELGEFAAKKIMALDPEDVSSYIMLSNAHVAAGRWEIASTLRREMKEK QMKRIPGCSWIEVRNQVHVFLSRDRKHSQMDEIHRILRFCIQHSQDSEASSFLMEFYI " mobile_element 2211830..2211999 /note="source:scaffold_7_CACTA_0795 2881 3054" /mobile_element_type="transposon:TIR/CACTA" gene 2215938..2220811 /locus_tag="TCM_022010" /note="dbxref CacaoGD:Thecc1EG022010" mRNA join(2215938..2216388,2216740..2216914,2217249..2217275, 2217419..2217572,2217658..2217706,2217824..2217938, 2218220..2218311,2218468..2218624,2218708..2218772, 2219135..2219232,2219314..2219419,2219843..2219982, 2220204..2220811) /locus_tag="TCM_022010" /product="FUS3-complementing gene 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025605001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014497t2" /inference="similar to AA sequence:Phytozome:GSVIVT01025605001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04679t00001" mRNA join(2216082..2216388,2216740..2216914,2217249..2217275, 2217419..2217572,2217658..2217706,2217824..2217938, 2218220..2218311,2218468..2218624,2218708..2218772, 2219135..2219232,2219314..2219419,2219843..2219982, 2220394..2220801) /locus_tag="TCM_022010" /product="FUS3-complementing gene 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025605001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014497t2" /inference="similar to AA sequence:Phytozome:GSVIVT01025605001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1684t4; inference alignment:Newbler:10:TSA:cgbaB_g04679t00001; inference alignment:Newbler:10:TSA:cgbaP1_g03198t00001" CDS join(2216281..2216388,2216740..2216914,2217249..2217275, 2217419..2217572,2217658..2217706,2217824..2217938, 2218220..2218311,2218468..2218624,2218708..2218772, 2219135..2219232,2219314..2219419,2219843..2219982, 2220394..2220427) /locus_tag="TCM_022010" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG014497t2" /codon_start=1 /product="FUS3-complementing gene 1 isoform 2" /protein_id="EOY07623.1" /db_xref="Phytozome:GSVIVT01025605001" /db_xref="TAIR:AT3G53570.4" /db_xref="UniProtKB/TrEMBL:UniRef50_P51566" /translation="METQRIIEFPHKNMDKRPRKRPRLTWDMPPPLPPPKVLPAIYCG QEFGNGGIANFSYPNNMFYRGIPCNGSPPWRPDDKDGHYVFAVGENLTPRYRILTKMG EGTFGQVLECFDNEKQEVVAIKIVRSIHKYREAAMIEIDVLQRLARHDVGGARCVQIR NWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQILESVAFMHDLQLIH TDLKPENILLVSSEYIKVPDYKFLSRSTKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERV LGPLPQHMVLRADRRAEKYFRRGTRLDWPDGATSKESLRAVWKLPRLPNLIMQHVDHS AGDLIDLLQGLLRYDPAERLKAGEALRHPFFTRDHRSLNKKGMIMMF" CDS join(2216281..2216388,2216740..2216914,2217249..2217275, 2217419..2217572,2217658..2217706,2217824..2217938, 2218220..2218311,2218468..2218624,2218708..2218772, 2219135..2219232,2219314..2219419,2219843..2219982, 2220204..2220288) /locus_tag="TCM_022010" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG014497t2" /codon_start=1 /product="FUS3-complementing gene 1 isoform 1" /protein_id="EOY07622.1" /db_xref="Phytozome:GSVIVT01025605001" /db_xref="TAIR:AT3G53570.4" /db_xref="UniProtKB/TrEMBL:UniRef50_P51566" /translation="METQRIIEFPHKNMDKRPRKRPRLTWDMPPPLPPPKVLPAIYCG QEFGNGGIANFSYPNNMFYRGIPCNGSPPWRPDDKDGHYVFAVGENLTPRYRILTKMG EGTFGQVLECFDNEKQEVVAIKIVRSIHKYREAAMIEIDVLQRLARHDVGGARCVQIR NWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQILESVAFMHDLQLIH TDLKPENILLVSSEYIKVPDYKFLSRSTKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERV LGPLPQHMVLRADRRAEKYFRRGTRLDWPDGATSKESLRAVWKLPRLPNLIMQHVDHS AGDLIDLLQGLLRYDPAERLKAGEALRHPFFTRDHRSMFVIWWPYVNCVHPMISGLRS DVQEEQ" gene 2222558..2224206 /locus_tag="TCM_022011" /note="dbxref CacaoGD:Thecc1EG022011" mRNA join(2222558..2222809,2222896..2223001,2223213..2224206) /locus_tag="TCM_022011" /product="Plant protein 1589 of Uncharacterized protein function" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s23000.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042970t1" /inference="similar to AA sequence:Phytozome:Glyma19g35810.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13261t1" CDS join(2222774..2222809,2222896..2223001,2223213..2223358) /locus_tag="TCM_022011" /note="paralog of Thecc1EG042970t1" /codon_start=1 /product="Plant protein 1589 of Uncharacterized protein function" /protein_id="EOY07624.1" /db_xref="Phytozome:Glyma19g35810.1" /db_xref="TAIR:AT3G55240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HC97" /translation="MGGDSSASYIHMVHHLIEECLIFNMSKEECIEALSKHANIKPVI TSTVWNELEKENKEFFEAYTRGRDQRATEIEKRQRIQSRLKASMRETIDKN" gene 2226403..2230626 /locus_tag="TCM_022012" /note="dbxref CacaoGD:Thecc1EG022012" mRNA join(2226403..2227488,2229695..2230247,2230324..2230626) /locus_tag="TCM_022012" /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:28637.m000211" /inference="similar to AA sequence:ricco:28637.m000211" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS 2226413..2227435 /locus_tag="TCM_022012" /note="dbxref ricco:28637.m000211" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative" /protein_id="EOY07625.1" /db_xref="TAIR:AT2G37400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIV4" /translation="MESCAKVHCRHQPLHLSFNHNRPSFPKPISSLSFRTSPIKLSSI RASSSSSSSSAPLCQNPKPSLFQTLTPLLKTTCIAVTVAAALFSTRFHQKPALAAPIV TPTVESTSTDTNISLEDQEKTIEEHLTQYPNDAEALRSLMEVRIKAKKLQQAIEVIDR LIELEPEDTEWPMLKAQIHSYGGDFELAKKEFEEILAKDPVRVEAYHGLVMAYSESGQ KMKELEKRIEGAMEKCKKEKKYKDFRDFKLLIAQIRVIEGNHWEALKVYEALVKEEPR DFRPYLCMGILYTLLKKKDEAEKQFEKFRKLVPRNHPYREYFVDNMVATKIFGEKAER EGAGKI" gene 2230738..2232639 /locus_tag="TCM_022013" /note="dbxref CacaoGD:Thecc1EG022013" mRNA join(2230738..2230905,2231856..2232639) /locus_tag="TCM_022013" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage" CDS join(2230741..2230905,2231856..2231954) /locus_tag="TCM_022013" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07626.1" /translation="MSPWRMAQPAIAGVLFYAMVFFFLKTLRDSFFLGSRPDLRFESH LLLTEILQRPVAMADDTLKEGILVSHQMPLPLTNMRRSIKSAS" gene 2234848..2240739 /locus_tag="TCM_022014" /note="dbxref CacaoGD:Thecc1EG022014" mRNA join(2234848..2235468,2236239..2236341,2236499..2238499, 2239125..2239305,2239658..2240739) /locus_tag="TCM_022014" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene18187" /inference="similar to AA sequence:frave:gene18187" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc461t3" mRNA join(2234903..2235386,2236253..2236341,2236499..2238499, 2239125..2239305,2239658..2240596) /locus_tag="TCM_022014" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene18187" /inference="similar to AA sequence:frave:gene18187" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc463t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc461t3" CDS join(2235299..2235468,2236239..2236341,2236499..2238499, 2239125..2239305,2239658..2240274) /locus_tag="TCM_022014" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene18187" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY07627.1" /db_xref="TAIR:AT3G53540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HCA0" /translation="METFWQRRPEVADRSCTELLPSTAPASLRGPIFSSFSFYLFLTD NFSLGLVAAESEGELFPGNRQLQKQRKFSKLASDSSSCGTDSTDEDQLTFELSWRSSK QSTGTPMKKLLAQEMSKENESRRRQPSVIARLMGLDGLPPQQPGHKQQKRTESKEKVQ KGGSFYSRRSSRKSSKEEQEFKDVFEVLDASKVETGSYSSQGTANSKLSDAEVAFVQQ KFMEAKRLSTDEKLQDSEEFNDALEVLDSNTDLLLKFLQQPDSLFTKHLHDLQGAHDL QGAQPQSRCGRISAMKSSHTLTNENGHLGRRAGRETQCKHCSKSPQGHREDLLSHSCG RYAAHNLLKSPKVQLEEKQEPAVAPTRIVVLKPNLGKSLNSMRTASSPCSSHHFPSDC TGQSEILGIENREAEIWGKKKVHQDVGFSRHNSRESREMAKEITRRMKNSFSNGSMKF STSRFRGYAGDESSCDVSGSESANDSDVTTVSYRDNIGRNKKHRRSSSRSSESSVSRE AKKRLSERWKLTHGSQELLMVSRGSTLGEMLAISDREVRPANSSGIVGEEGCSEFGND VRRAVWKEPLGISSRDGWKNECLGNLSRSRSVPASSTDFGSPRINTRHESLRRDKYVI PKEGFKWDRNKAVKGNFSPWVAPLPSNQRSCTKKSQFLSTCSSNNENSDTSPEFHITP YQVKQTLEGHDQPEQSPMVSGASSTSVDASSVLENAVDVNDQNKVVLSEPSQMELSAS ASMNGDCSTGDLDNLESQESSDGPSKQATLHCPVSELESRASSKEADQPSPVSVIEAP FTDDLSSGSECFESISADLHGLRMQLQLLKLESEAYEEGTMLISSDDDVDEVSVGFAE DKGMPRAEENWESEYIVDVLVNSGINGADLDTFLATWHSPECPVNPSVFEELEKKYCN LNSWSRAERRLMFNWINSKLLETYQQFIDQHPWVKSARKIIPKWNIGELEDSLRKSLV SQNKKLHMDAEEMVLAGESQWLYLREDIDVIGGEMERLLVDELVAEVSGRG" CDS join(2235299..2235386,2236253..2236341,2236499..2238499, 2239125..2239305,2239658..2240274) /locus_tag="TCM_022014" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene18187" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY07628.1" /db_xref="TAIR:AT3G53540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HCA0" /translation="METFWQRRPEVADRSCTELLPSTAPASLRGNRQLQKQRKFSKLA SDSSSCGTDSTDEDQLTFELSWRSSKQSTGTPMKKLLAQEMSKENESRRRQPSVIARL MGLDGLPPQQPGHKQQKRTESKEKVQKGGSFYSRRSSRKSSKEEQEFKDVFEVLDASK VETGSYSSQGTANSKLSDAEVAFVQQKFMEAKRLSTDEKLQDSEEFNDALEVLDSNTD LLLKFLQQPDSLFTKHLHDLQGAHDLQGAQPQSRCGRISAMKSSHTLTNENGHLGRRA GRETQCKHCSKSPQGHREDLLSHSCGRYAAHNLLKSPKVQLEEKQEPAVAPTRIVVLK PNLGKSLNSMRTASSPCSSHHFPSDCTGQSEILGIENREAEIWGKKKVHQDVGFSRHN SRESREMAKEITRRMKNSFSNGSMKFSTSRFRGYAGDESSCDVSGSESANDSDVTTVS YRDNIGRNKKHRRSSSRSSESSVSREAKKRLSERWKLTHGSQELLMVSRGSTLGEMLA ISDREVRPANSSGIVGEEGCSEFGNDVRRAVWKEPLGISSRDGWKNECLGNLSRSRSV PASSTDFGSPRINTRHESLRRDKYVIPKEGFKWDRNKAVKGNFSPWVAPLPSNQRSCT KKSQFLSTCSSNNENSDTSPEFHITPYQVKQTLEGHDQPEQSPMVSGASSTSVDASSV LENAVDVNDQNKVVLSEPSQMELSASASMNGDCSTGDLDNLESQESSDGPSKQATLHC PVSELESRASSKEADQPSPVSVIEAPFTDDLSSGSECFESISADLHGLRMQLQLLKLE SEAYEEGTMLISSDDDVDEVSVGFAEDKGMPRAEENWESEYIVDVLVNSGINGADLDT FLATWHSPECPVNPSVFEELEKKYCNLNSWSRAERRLMFNWINSKLLETYQQFIDQHP WVKSARKIIPKWNIGELEDSLRKSLVSQNKKLHMDAEEMVLAGESQWLYLREDIDVIG GEMERLLVDELVAEVSGRG" gene complement(2240776..2241918) /locus_tag="TCM_022015" /note="dbxref CacaoGD:Thecc1EG022015" mRNA complement(2240776..2241918) /locus_tag="TCM_022015" /product="Hydroxyproline-rich glycofamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025599001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022016t1" /inference="similar to AA sequence:Phytozome:POPTR_0009s11680.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.29 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc11541t1" CDS complement(2240855..2241703) /locus_tag="TCM_022015" /note="paralog of Thecc1EG022016t1" /codon_start=1 /product="Hydroxyproline-rich glycofamily protein, putative" /protein_id="EOY07629.1" /db_xref="Phytozome:POPTR_0009s11680.1" /db_xref="TAIR:AT1G49330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIV6" /translation="MEKASQPLQEFGGKEDDEDLLTLSLSTGPKTSAPAPPSSPFVQE THQLIYLPSTPVPLSPPTSFFQQFLSIPQAPPLPPYHNFQTHSPNLNPDHNAAVPQEI ASTSRPCRSRRNPFQTPKQGKTETVPAPYPWATTQRATVHSLDYLLSHNITTISGEVK CKKCEKIYKIEYDLQQKFTEVASFISRNKLSMHDRAPSDWMYPTLPSCEFCGSYLKPV LPKKKSINWLFLLLGQMLGCCKLSELKYFCKHTHNHRTGAKDRVLYLAYLGLCKQLDP KGPFDI" gene complement(2242085..2243758) /locus_tag="TCM_022016" /note="dbxref CacaoGD:Thecc1EG022016" mRNA complement(2242085..2243758) /locus_tag="TCM_022016" /product="Hydroxyproline-rich glycofamily protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT2G16190.1.2" /inference="similar to AA sequence:Phytozome:POPTR_0009s11680.1" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.32 coverage" CDS complement(2242381..2243694) /locus_tag="TCM_022016" /codon_start=1 /product="Hydroxyproline-rich glycofamily protein, putative" /protein_id="EOY07630.1" /db_xref="Phytozome:POPTR_0009s11680.1" /db_xref="TAIR:AT1G49330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIV6" /translation="MKRTHVFFPCSNDEEGDCEEFLTPWPPSSSSPPSGQQNLHQLPP CLPSTPHCYDFFPCKPDPRRRLSSRCFYGEEEHEELLNLSLSLGPPQPLSSSSVPCTH QKLSLMNNPNPKKRLLSQSFDGEENHEEGLDLSLSIGRGPASSSGLPSTHKKRLFSWS FDGEEDHEELLDLSLSLGRGPSSSSGSPSTYQKRLFSLSFDCEEDHEELLNLSISLGP GPSSIPESSSSFGLPSTHHELPFTDINPNPVHEQVSTGAQHCRPRPRCRKNPFQNPKA GKTETIAAPYPWATTRRATVHDLNYLLSHGISMISGDVECKSCQETYKIQYNLRGKFK EIKDFISAKKFAMHDRAPPAWMDPTLDSCKNCGSALKPVIPKKREINWLFLLLGIMLG CCKLSDLKYFCKHTKNHRTGAKDRVLYLTYLGLCKQLDPHGPFDV" gene complement(2243917..2250218) /locus_tag="TCM_022017" /note="dbxref CacaoGD:Thecc1EG022017" mRNA complement(join(2243917..2244094,2245849..2246183, 2246403..2246478,2246684..2247386,2250178..2250218)) /locus_tag="TCM_022017" /product="Chloroplast-targeted copper chaperone, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s23040.1" /inference="similar to AA sequence:ricco:27917.m000091" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13264t1" CDS complement(join(2246002..2246183,2246403..2246478, 2246684..2247316)) /locus_tag="TCM_022017" /note="dbxref ricco:27917.m000091" /codon_start=1 /product="Chloroplast-targeted copper chaperone, putative" /protein_id="EOY07631.1" /translation="MKRMDIFCASQASTAICLSMDQASSSCYSESAIQLGGRAIDRHN PIIRDAKRFTRTLPSNPCTSQQPPINPLPYHQLRKNEKRSSSSKPNDHTKKSSAASAK SKDHKKKSSTKSSSLKPTDHIVSRKSTSDIKDADSGRKSFAKEVDFVTPPGSSRYLLG DSAFFDGISDYDPVWALVPPETKKIQAIKQDQSIVSKPSSSSRSEKPSADQVVVLRVS LHCKGCEGKVRKHLSRMEGVTSFSIDFAAKKVTIVGDVTPLGVLASVSKVKSAQFWTS SMSASSASTALASGNLATKK" gene complement(2250538..2254403) /locus_tag="TCM_022018" /note="dbxref CacaoGD:Thecc1EG022018" mRNA complement(join(2250538..2251274,2251371..2251463, 2251755..2251829,2251929..2252012,2252849..2252928, 2253020..2253167,2253335..2254048)) /locus_tag="TCM_022018" /product="UDP-glucuronic acid decarboxylase 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400041368" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004657t1" /inference="similar to AA sequence:frave:gene18185" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.40 coverage; inference alignment:Newbler:10:TSA:cgbaL_g06754t00001; inference alignment:Newbler:10:TSA:cgbaL_g06754t00001" CDS complement(join(2251068..2251274,2251371..2251463, 2251755..2251829,2251929..2252012,2252849..2252928, 2253020..2253167,2253335..2253994)) /locus_tag="TCM_022018" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene18185; paralog of Thecc1EG004657t1" /codon_start=1 /product="UDP-glucuronic acid decarboxylase 1 isoform 1" /protein_id="EOY07632.1" /db_xref="TAIR:AT3G53520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HQX8" /translation="MKQLHKQSSVNHRRDEEIPSNQTPPYSPKSLKQPRSLPRSINYL FKEQRLLFILVGILIGSTFFILQPTLSRLGPTEVRSSIPRSFSTDTNTTTTTATISHT QDASGSYSADSNKPFHGKVGRVPVGIGRRRMRIVVTGGAGFVGSHLVDKLIGRGDEVI VIDNFFTGRKENVVHLFGNPRFELIRHDVVEPILLEVDQIYHLACPASPVHYKYNPVK TIKTNVMGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGERSCYD EGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQAIRKQPMTVY GDGKQTRSFQYVSDLVDGLVALMEGEHVGPFNLGNPGEFTMLELAEVVKETIDPSATI EYKPNTADDPHMRKPDISKAKELLNWEPKISLREGLPLMVSDFRNRILNEDEGKGA" mRNA complement(join(2251248..2251274,2251371..2251759, 2252855..2252928,2253020..2253167,2253335..2254088, 2254198..2254403)) /locus_tag="TCM_022018" /product="UDP-glucuronic acid decarboxylase 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400041368" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004657t2" /inference="similar to AA sequence:frave:gene18185" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.42 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc648t6; inference alignment:Newbler:10:TSA:cgbaL_g06754t00001" CDS complement(join(2251676..2251759,2252855..2252928, 2253020..2253167,2253335..2253994)) /locus_tag="TCM_022018" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene18185; paralog of Thecc1EG004657t2" /codon_start=1 /product="UDP-glucuronic acid decarboxylase 1 isoform 2" /protein_id="EOY07633.1" /db_xref="TAIR:AT3G53520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HQX8" /translation="MKQLHKQSSVNHRRDEEIPSNQTPPYSPKSLKQPRSLPRSINYL FKEQRLLFILVGILIGSTFFILQPTLSRLGPTEVRSSIPRSFSTDTNTTTTTATISHT QDASGSYSADSNKPFHGKVGRVPVGIGRRRMRIVVTGGAGFVGSHLVDKLIGRGDEVI VIDNFFTGRKENVVHLFGNPRFELIRHDVVEPILLEVDQIYHLACPASPVHYKYNPVK TIKTNVMGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGERSCYD EGKRTAETLTMDYHRGAGIWYGWLLSYLGFLCCHFFSRIFKYKVT" gene 2255360..2259197 /locus_tag="TCM_022019" /note="dbxref CacaoGD:Thecc1EG022019" mRNA join(2255360..2255447,2255550..2255685,2255775..2255931, 2258883..2259197) /locus_tag="TCM_022019" /product="Ribosomal L29 family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s23060.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041920t1" /inference="similar to AA sequence:ricco:29788.m000318" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g09673t00001" CDS join(2255444..2255447,2255550..2255685,2255775..2255931, 2258883..2258957) /locus_tag="TCM_022019" /note="dbxref ricco:29788.m000318; paralog of Thecc1EG041920t1" /codon_start=1 /product="Ribosomal L29 family protein" /protein_id="EOY07634.1" /db_xref="TAIR:AT5G02610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KDR2" /translation="MARIKVHELRNKSKTELLSQLTDLKAELALLRVAKVTGGAPNKL SKIKVVRLSIAQVLTVISQKQKSALREAYKKKKFLPLDLRPKKTRAIRRRLTKHQASL KTEREKKREMYFPLRKYAIKV" mobile_element complement(2260231..2260441) /note="source:CACAO_PIF_E144_scaffold_10 1739 2390" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(2260442..2260950) /note="source:CACAO_on_SS_E135_scaffold_10 5011 5497" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(2260951..2261123) /note="source:CACAO_PIF_E144_scaffold_10 1197 1738" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(2264137..2264547) /note="source:scaffold_7_CACTA_0795 2864 3299" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2264932..2265132 /note="source:CACAO_on_S_E390_scaffold_9 2166 2362" /mobile_element_type="transposon:TIR/Mutator" mobile_element 2267368..2267869 /note="source:scaffold_9_CACTA_0946 17746 18255" /mobile_element_type="transposon:TIR/CACTA" gene 2269123..2272347 /locus_tag="TCM_022020" /note="dbxref CacaoGD:Thecc1EG022020" mRNA 2269123..2272347 /locus_tag="TCM_022020" /product="Exocyst subunit exo70 family protein H4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s23080.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041921t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s23080.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.14 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1271t3" CDS 2269228..2271417 /locus_tag="TCM_022020" /note="paralog of Thecc1EG041921t1" /codon_start=1 /product="Exocyst subunit exo70 family protein H4" /protein_id="EOY07635.1" /db_xref="Phytozome:POPTR_0006s23080.1" /db_xref="TAIR:AT3G09520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HQX6" /translation="MSWTWATRRHVYRAQGRCLTQKVKSLTPRSSLPSNGDIDPTSIY FPPNVPLHLKLGQVRRKPKAKLKIPILFLFICRQQKPNKNSFKTLTSSPSQKMPRKGM RSLCFSSRTPSFALSRQSMSPSTTSLSSTPRRRISESMIEQTIDDAATIIMKWDADAS AYAKVTSLFYESKKEAMQFIRSVNELQKIMHLLVSEDSGSEKLVLAQNLMQISMKRLQ KEFYQILSMNRAHLDPESVSTRSSRTSARSSLSDYDDEGSTEDEIRAAGDSISEVEEV SSMAMSDLKSIADCMIASGYAKECIHIYKIIRKSIIDEGIYKLGIEKMSSSQINKMDW DVLDLKIQNWLEAVKVSIRTLFTGERILCDHVFAMSDSIRESCFTEISKDGAMLLFGF PELAAKTKRSPQEKMFRVLDMYTAMSENWQEIETIFSFESTSAVRSQALNSLVRLSES VRSLLTDFESTIQKDSSKVMIPGGGLHSLTIYSMNYLTLLADYSNVLTDIISDWPPPA KSSLPKSYFDSPYSDDTPVPAISVHIAWLILVLLCKLDGKAKHYKDVSLSYLFLANNL QHVISRVRTSNLQYLLGEEWITKHEAKVRQFAANYERLAWGHVFASLPENPTSSMSPG EAKECFRKFNSSFDDVYWKQSSCLVPDSKLRDEIKLSIARKLVPVYREFYDTQKSTFG DERTARLFVRFSPEDLGNHLSDLFFGTVNSGSSSTSSSTSSHRRRMR" mobile_element 2271677..2271732 /note="source:CACAO_M_S_E34539_F233_scaffold_4 1190 1244" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(2272774..2273001,2273809..2273877, 2274006..>2274212)) /locus_tag="TCM_021794" /note="paralog of Thecc1EG042986t1" /codon_start=1 /product="Pectin lyase-like superfamily protein" /protein_id="EOY07335.1" /db_xref="Phytozome:POPTR_0006s23090.1" /db_xref="TAIR:AT3G55140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M3D5" /translation="HFSQHDKTILIGADPSHVGDRCIRVTIHHCFFDGTRQRHPRVRF GKVHLYNNYTRHWGIYAVCASVESQIYSQCNIYEAGQKKVAFKYLTEKATDKKEACSG CIRSEGDLFTAGTQAGLLTENARSNLFHPSEYYPTWTVEAPTDTLKHVVQHCTGWQCV PRPTEAA" gene 2276186..2281881 /locus_tag="TCM_022022" /note="dbxref CacaoGD:Thecc1EG022022" mRNA join(2276186..2276458,2276713..2277167,2277507..2277699, 2277792..2277854,2278166..2278250,2278596..2279037, 2279500..2281230) /locus_tag="TCM_022022" /product="Ankyrin repeat family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400019529" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042989t1" /inference="similar to AA sequence:Phytozome:GSVIVT01025592001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2343t3" CDS join(2276437..2276458,2276713..2277167,2277507..2277699, 2277792..2277854,2278166..2278250,2278596..2279037, 2279500..2280324) /locus_tag="TCM_022022" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042989t1" /codon_start=1 /product="Ankyrin repeat family protein isoform 1" /protein_id="EOY07636.1" /db_xref="Phytozome:GSVIVT01025592001" /db_xref="TAIR:AT3G09550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C7A2" /translation="MGSGKEEGYILEFMDFLFFNMNDTCKECEKDLEKGLSPPHWPAQ LVETIPRPSPTTPRPALVLSNSGKALMASNSGKALVVSNSGKALVVSNSGKFLAGSNS GKRFDKKKYVKQVTGRHNDTELHLAAQRGDVGAVRQILAEIDAQMMGTLSGAEFDAEV AEIRLAVVNEVNQLGETAMFTAAEKGHLDVVMELLQYTTKEGISLKNRSGFDPLHIAA NQGHEVHESSVIYLHVKKHVTAFVLKDQSHVLIHDKLTIATSEIDVLAKGQSMYSLSQ FNNYLYAAIVRVLLDHDPGLSKTVGQANATPLVSAATKGHTAVVNELLSKDPSLLEIS KSNGKNPLHFAARQGHVDIVKALLDKDPQLARRTDKKAQTALHMAVKGVSCEVVRLLL QADSAIVMLPDKFGNTALHVATRKKRAEIVNELLHLPDTSVNALTRDHKTALDIAEGL PLSEEIAEIKDCLSRYGAVRANELNQPRDELRKTVTEIKKDVHTQLEQTRKTNRNVNG IAVELRKLHRAGIYNATNSVTVVAVLFATVAFAAIFTVPGGDNDSGMAVAVSRASFKI FFIFNALALFISLAVVVVQITIVRGEMKSERRVVEIINKLMWLASVFTSISFMSSSYI VVGRHNKWAANFVTVIGGVIMAGVLGTMTYFVVKNKRIRKVKKKEKNSRNATHSLRLS DSDSEVNPIYAI" mRNA join(2276650..2277167,2277507..2277699,2278628..2279037, 2279500..2280997,2281132..2281881) /locus_tag="TCM_022022" /product="Ankyrin repeat family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400019529" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042989t1" /inference="similar to AA sequence:Phytozome:GSVIVT01025592001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc2018t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2343t3" CDS join(2276730..2277167,2277507..2277699,2278628..2279037, 2279500..2280324) /locus_tag="TCM_022022" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042989t1" /codon_start=1 /product="Ankyrin repeat family protein isoform 2" /protein_id="EOY07637.1" /db_xref="Phytozome:GSVIVT01025592001" /db_xref="TAIR:AT3G09550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C7A2" /translation="MDFLFFNMNDTCKECEKDLEKGLSPPHWPAQLVETIPRPSPTTP RPALVLSNSGKALMASNSGKALVVSNSGKALVVSNSGKFLAGSNSGKRFDKKKYVKQV TGRHNDTELHLAAQRGDVGAVRQILAEIDAQMMGTLSGAEFDAEVAEIRLAVVNEVNQ LGETAMFTAAEKGHLDVVMELLQYTTKEGISLKNRSGFDPLHIAANQGHEAIVRVLLD HDPGLSKTVGQANATPLVSAATKGHTAVVNELLSKDPSLLEISKSNGKNPLHFAARQG HVDIVKALLDKDPQLARRTDKKAQTALHMAVKGVSCEVVRLLLQADSAIVMLPDKFGN TALHVATRKKRAEIVNELLHLPDTSVNALTRDHKTALDIAEGLPLSEEIAEIKDCLSR YGAVRANELNQPRDELRKTVTEIKKDVHTQLEQTRKTNRNVNGIAVELRKLHRAGIYN ATNSVTVVAVLFATVAFAAIFTVPGGDNDSGMAVAVSRASFKIFFIFNALALFISLAV VVVQITIVRGEMKSERRVVEIINKLMWLASVFTSISFMSSSYIVVGRHNKWAANFVTV IGGVIMAGVLGTMTYFVVKNKRIRKVKKKEKNSRNATHSLRLSDSDSEVNPIYAI" gene 2280638..2287114 /locus_tag="TCM_022023" /note="dbxref CacaoGD:Thecc1EG022023" mRNA join(2280638..2280997,2281132..2281559,2283800..2283842, 2284355..2284771,2285121..2285530,2285848..2287114) /locus_tag="TCM_022023" /product="Ankyrin repeat family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025591001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041926t2" /inference="similar to AA sequence:Phytozome:GSVIVT01025591001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13291t2" CDS join(2281545..2281559,2283800..2283842,2284355..2284771, 2285121..2285530,2285848..2286726) /locus_tag="TCM_022023" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG041926t2" /codon_start=1 /product="Ankyrin repeat family protein isoform 1" /protein_id="EOY07638.1" /db_xref="Phytozome:GSVIVT01025591001" /db_xref="TAIR:AT1G07710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6AWW5" /translation="MLMLSGKTGALVFFKAKNQEIKTIKKKGGKLHSSFWEFALKEAK EQETTGMEQSFGFGKKKMTKQMTGKRDDTPLHSAVRAGDFELVLEIISGGEDGELRDL LSKQNQSGETALYVAAECGYADLVKEMIKYCDIDLAGAQARNGYDAFHIAAKQGDLGV LKILMEANLDLSMTSDSLNTTALHTAASQGHTEVVNFLLENGSNMATIARRNGKTALH SAAKNGHLEIVKALLSKEPGIAMRIDKKGQTALHMAVKGKNVEVVDELIKSDPSLINM VDTKGNTALHIGTQKGRIQIVQMLLNHSGVNKLVINKFGETALDTAEKNKRSDIAGIL GEHGVQSAKFIKSQPTNSARELKQTVSDIKNGVHHQLEHTRQTRKRVQGIAKRLNKMH VEGLNNAINSTTVVAVLIATIAFAAIFNVPGQYADSPEDKAPGVSPGQARTASKPPFM IFIVFDSIALFISLAVVVVQTSVVVIQRNAKEQMMAVINKLMWLACVLISVAFLALSY IVVGEDERWLANLITGIGTVIMVSTLGTLCYWLIVNRIEASKIRSIRRSSINSRSRSL SMSYMSDMDILHDEQKKLYVV" mobile_element 2282899..2282959 /note="source:scaffold_7_CACTA_0795 2968 3032" /mobile_element_type="transposon:TIR/CACTA" mRNA join(2283950..2284771,2285121..2285530,2285848..2287114) /locus_tag="TCM_022023" /product="Ankyrin repeat family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025591001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041926t2" /inference="similar to AA sequence:Phytozome:GSVIVT01025591001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:PASA:2:TSA:puevd3b021320t1a2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13291t2" CDS join(2284447..2284771,2285121..2285530,2285848..2286726) /locus_tag="TCM_022023" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG041926t2" /codon_start=1 /product="Ankyrin repeat family protein isoform 2" /protein_id="EOY07639.1" /db_xref="Phytozome:GSVIVT01025591001" /db_xref="TAIR:AT1G07710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6AWW5" /translation="MEQSFGFGKKKMTKQMTGKRDDTPLHSAVRAGDFELVLEIISGG EDGELRDLLSKQNQSGETALYVAAECGYADLVKEMIKYCDIDLAGAQARNGYDAFHIA AKQGDLGVLKILMEANLDLSMTSDSLNTTALHTAASQGHTEVVNFLLENGSNMATIAR RNGKTALHSAAKNGHLEIVKALLSKEPGIAMRIDKKGQTALHMAVKGKNVEVVDELIK SDPSLINMVDTKGNTALHIGTQKGRIQIVQMLLNHSGVNKLVINKFGETALDTAEKNK RSDIAGILGEHGVQSAKFIKSQPTNSARELKQTVSDIKNGVHHQLEHTRQTRKRVQGI AKRLNKMHVEGLNNAINSTTVVAVLIATIAFAAIFNVPGQYADSPEDKAPGVSPGQAR TASKPPFMIFIVFDSIALFISLAVVVVQTSVVVIQRNAKEQMMAVINKLMWLACVLIS VAFLALSYIVVGEDERWLANLITGIGTVIMVSTLGTLCYWLIVNRIEASKIRSIRRSS INSRSRSLSMSYMSDMDILHDEQKKLYVV" gene complement(2290130..2292213) /locus_tag="TCM_022025" /note="dbxref CacaoGD:Thecc1EG022025" mRNA complement(2290130..2292213) /locus_tag="TCM_022025" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s08160.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042990t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s08160.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g09615t00001" CDS complement(2291066..2292163) /locus_tag="TCM_022025" /note="paralog of Thecc1EG042990t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07640.1" /db_xref="Phytozome:POPTR_0016s08160.1" /db_xref="TAIR:AT2G39370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIW1" /translation="MATSQASCNHADEDYIDMEVSSSSNFLCYSISSPPQSREFEFQM CSVSRDGETSTSPADELFYKGKLLPLHLPPRLQMVQKLLKSSNSTFETKTEAPFEENS AVSFITGSATLSTNTSTPLESCSISPSESCRVSSELNPDDYFFEWSTELNGFIGNDSK KSWSRKLKQSSISQKLKASRVYLKSLFSKSACSDESCAKAACNAEAENVSKSKDRLNK YTKMAKKNPFGKIDNDRFKISSIIMKSIDKEFAEEAANSHRRSFSGAIQRHSAIKSSS TSTSSSGSSSSSSSFSFSSSGFCDLQLLKRSNSANSEIESSIEGAIAHCKQSQQPPSS RKTASELGVCSLSVSKIAVSGDQERPGLCSI" gene complement(2292309..2302613) /locus_tag="TCM_022026" /note="dbxref CacaoGD:Thecc1EG022026" mRNA complement(join(2292309..2293266,2293844..2293943, 2294868..2294928,2295342..2295605,2295690..2295760, 2296021..2296108,2296182..2296246,2296375..2296441, 2296648..2296778,2296940..2297047,2297326..2297391, 2297868..2297934,2298392..2298468,2299002..2299112, 2299547..2299664,2300228..2300301,2300384..2300480, 2300602..2300654,2301430..2301522,2301624..2301908, 2302011..2302613)) /locus_tag="TCM_022026" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene18176" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042992t1" /inference="similar to AA sequence:ricco:29836.m000556" /note="quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.44 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1601t1" gene 2292613..2294140 /locus_tag="TCM_022027" /note="dbxref CacaoGD:Thecc1EG022027" mRNA join(2292613..2293206,2293388..2294140) /locus_tag="TCM_022027" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.64 coverage" CDS complement(join(2293148..2293266,2293844..2293943, 2294868..2294928,2295342..2295605,2295690..2295760, 2296021..2296108,2296182..2296246,2296375..2296441, 2296648..2296778,2296940..2297047,2297326..2297391, 2297868..2297934,2298392..2298468,2299002..2299112, 2299547..2299664,2300228..2300301,2300384..2300480, 2300602..2300654,2301430..2301522,2301624..2301908, 2302011..2302160)) /locus_tag="TCM_022026" /note="dbxref ricco:29836.m000556; paralog of Thecc1EG042992t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07641.1" /db_xref="TAIR:AT2G37370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIW2" /translation="MSWIRTAVNRAVEVGGNNNLTRTVRSYADSVVQHAGSAVAGGAK MIQYRIAARNMQNFRLTVKRLEEVSVSCRGVERVQLLRRWLVALKEIERLSNDQNNKD ITDDKNTKNNNNSDTTKSNDNDENADDQFSFEEFKDSPKKPILVYYFDPQIGEPMNFR EVFLYSQALEGMTLSMILEAPNEEEVSLFLEIFRICLAEGKEVHEAVMSSIKNLAMAF SNYQEEVLVKREELLQYAQAAIAGLKISADLARIDAEACSLKKKLGEMKAFQNPSNEG HEESSEKQTAAMIEFLKEALGQVRLYSRLEALLLQKKSLSNGDSPKLHAEKVDKLKVL SESLVNSTSKAEKRIVEHRFQKEEALSFRVAKANEVSQHEKELEEGIQELEKQKDELE AELKKVNASLTAARARLRNAKEEREHFDEASNQILLLLKSREEEISKSLASCRVEADV VNAWINFLEDTWVLQTTYNEQKEKQVNGELERYGEYFVNLVIHLLSAYKEQLEPSISR IRQLVENLSSSDRSGRAAKDESQKGLNQRKNVEEEYLNLESKISNTLSVVDSMKTQFY SPNEGIQRKNNQRVKELFDNLESIKGEFESIERPTFEVETPSQKSQSPSSAKSQRSPW SRLRSSSRRAEQKKLKFEFENDDGESSEYETEEIVEWDNLLISGTCFHAGEDNVKHET AFNSYSVQNYKSNAVFSLNIAAGFGSKLEDFDQRFRMEPTSNKLERKTYLLYLPTRLK STTLQIESVKIMVW" CDS 2293599..2293835 /locus_tag="TCM_022027" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07642.1" /translation="MCANHLTRSKHGEKNFYLFSSLDSSIFRSFHCSCLTSLTTRISS THPEKKKERISSNVVVVGRGLSKARGLLACLLLC" mobile_element complement(2302545..2302707) /note="source:scaffold_4_CACTA_0483 972 1150" /mobile_element_type="transposon:TIR/CACTA" gene complement(2302748..2310448) /locus_tag="TCM_022029" /note="dbxref CacaoGD:Thecc1EG022029" mRNA complement(join(2302748..2303346,2303474..2303569, 2303678..2303806,2303910..2303953,2304269..2304341, 2304599..2304685,2305315..2305399,2305819..2305892, 2305987..2306585,2306690..2308326,2308790..2309281, 2310274..2310448)) /locus_tag="TCM_022029" /product="Lipin family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s23130.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s23130.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1029t3" mRNA complement(join(2302952..2303346,2303474..2303569, 2303678..2303806,2303910..2303953,2304269..2304344, 2304599..2304685,2305315..2305399,2305819..2305892, 2305987..2306585,2306690..2308326,2308790..2309191)) /locus_tag="TCM_022029" /product="Lipin family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s23130.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s23130.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1609t1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1029t3" CDS complement(join(2303293..2303346,2303474..2303569, 2303678..2303806,2303910..2303953,2304269..2304341, 2304599..2304685,2305315..2305399,2305819..2305892, 2305987..2306585,2306690..2308163)) /locus_tag="TCM_022029" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Lipin family protein isoform 1" /protein_id="EOY07643.1" /db_xref="Phytozome:POPTR_0006s23130.1" /db_xref="TAIR:AT3G09560.3" /db_xref="UniProtKB/TrEMBL:UniRef50_D7L899" /translation="MNVVGKVGSLISQGVYSVATPFHPFGGAVDVIVVQQQDGTFRST PWYVRFGKFQGVLKGAEKVVRITVNGVEADFHMYLDNSGEAYFVREVDSGKGSETNGD LKDSDGEVIQDDSNKHISEFCRIEHSVSDSGVAQLRDECEATCPKRLERAESDTRFYE FQDEQSSLEGSVNLSEFGSGRYEGLDGEHFGEAQVLDSEVILVSVDGHMLTAPVSASE QSPENVQLSTPQFHLGPGEGPDFCEGSEEFRSGDNVWTADYISKLNSSAAKGSSDDVC SVNSDSIALRHQPEVCEEGGEHACQTEETLNLSNRESELDRQSDVEDASVHNKKEDVF KSCLELSELCRHGENTDSEEIDSPLETQLSQDKPFSSSPDIDETENGAVGDSRNEDVL SPSYSPNSSSNNGSPDLPVEGEPVEMKVLDTDYMGSNGVSVDSIGTDPEWKDEQFGTS AATEGINGSPQSPAPEDKSSKSEIVETEAAFSKEIESNASLGFEISLCGNELYAGMGL EAAAEVFEAHRIPADEYKNSAMSIIKNGNLIIRFGQQYLPWEKAAPVVLGMAAFGLEL PLEPQDAIPVEQDESSNPKDDDSIVTSTSSGRRWRLWSIPFRRVKTLEHTNSNSSSEE VFVDTESGLQNSLSDSTPTSSGRIESPNKQFIRTNVPTNEQIASLNLKDGQNMITFSF CTRVLGTQQVDAHLYLWKWNAKIVISDVDGTITKSDVLGQFMPLVGRDWTQSGVARLF SAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQDGKALPNGPVVISPDGLFPSLYREV IRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPKGKIFIINPKG EVAISRIDVRSYTSLHTLVNDMFPPTSLVEQEDFNSWNFWKVPLPDIE" CDS complement(join(2303293..2303346,2303474..2303569, 2303678..2303806,2303910..2303953,2304269..2304344, 2304599..2304685,2305315..2305399,2305819..2305892, 2305987..2306585,2306690..2308163)) /locus_tag="TCM_022029" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Lipin family protein isoform 2" /protein_id="EOY07644.1" /db_xref="Phytozome:POPTR_0006s23130.1" /db_xref="TAIR:AT3G09560.3" /db_xref="UniProtKB/TrEMBL:UniRef50_D7L899" /translation="MNVVGKVGSLISQGVYSVATPFHPFGGAVDVIVVQQQDGTFRST PWYVRFGKFQGVLKGAEKVVRITVNGVEADFHMYLDNSGEAYFVREVDSGKGSETNGD LKDSDGEVIQDDSNKHISEFCRIEHSVSDSGVAQLRDECEATCPKRLERAESDTRFYE FQDEQSSLEGSVNLSEFGSGRYEGLDGEHFGEAQVLDSEVILVSVDGHMLTAPVSASE QSPENVQLSTPQFHLGPGEGPDFCEGSEEFRSGDNVWTADYISKLNSSAAKGSSDDVC SVNSDSIALRHQPEVCEEGGEHACQTEETLNLSNRESELDRQSDVEDASVHNKKEDVF KSCLELSELCRHGENTDSEEIDSPLETQLSQDKPFSSSPDIDETENGAVGDSRNEDVL SPSYSPNSSSNNGSPDLPVEGEPVEMKVLDTDYMGSNGVSVDSIGTDPEWKDEQFGTS AATEGINGSPQSPAPEDKSSKSEIVETEAAFSKEIESNASLGFEISLCGNELYAGMGL EAAAEVFEAHRIPADEYKNSAMSIIKNGNLIIRFGQQYLPWEKAAPVVLGMAAFGLEL PLEPQDAIPVEQDESSNPKDDDSIVTSTSSGRRWRLWSIPFRRVKTLEHTNSNSSSEE VFVDTESGLQNSLSDSTPTSSGRIESPNKQFIRTNVPTNEQIASLNLKDGQNMITFSF CTRVLGTQQVDAHLYLWKWNAKIVISDVDGTITKSDVLGQFMPLVGRDWTQSGVARLF SAIKENGYQLLFLSARAIVQAYLTRSFLLNLKQQDGKALPNGPVVISPDGLFPSLYRE VIRRAPHEFKIACLEDIKKLFPSDYNPFYAGFGNRDTDELSYRKIGIPKGKIFIINPK GEVAISRIDVRSYTSLHTLVNDMFPPTSLVEQEDFNSWNFWKVPLPDIE" mobile_element 2311241..2311339 /note="source:scaffold_1_CACTA_0032 2351 2447" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2311493..2311651) /note="source:scaffold_7_CACTA_0795 2862 3032" /mobile_element_type="transposon:TIR/CACTA" gene 2312527..2315234 /locus_tag="TCM_022030" /note="dbxref CacaoGD:Thecc1EG022030" mRNA 2312527..2315234 /locus_tag="TCM_022030" /product="Lung seven transmembrane receptor family protein" /inference="alignment:exonerate- protein:2:ricco:29836.m000557" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026130t1" /inference="similar to AA sequence:ricco:29836.m000557" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1020t1" CDS 2312956..2314272 /locus_tag="TCM_022030" /note="dbxref ricco:29836.m000557; paralog of Thecc1EG026130t1" /codon_start=1 /product="Lung seven transmembrane receptor family protein" /protein_id="EOY07645.1" /db_xref="TAIR:AT5G18520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZ39" /translation="MTKTTLLLLLFCLLSLLSSTTAEIKTLTINSDSRPMILFEKFGF THTGHVAIAVSSVLVSSSVNAPNPDSSRLGFFLLSEESLLQVLLEIQQNPHFCVLDSH YIQRLFTFSDLSPPPLSRFDRSYPVSSPNEYSLFFSNCAPETRVSMNVRTEIYNLDRD GSKDFLSAGLTQLPSLYTFFSILYLGFLAYWIYVCYTNKRSVHRIHLLMAGLLLFKAL NLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQERE KKVLMIVIPLQVLANIASVVIGETGPFIKDWVTWNQVFLLVDIICCCAIILPIVWSIR SLRETSKTDGKAARNLAKLTLFRQFYIVVIGYLYFTRIVVFALRTIAAYKYQWVSNAA EETASLVFYLVIFYMFRPVEKNEYFILDEEEEEAAELALRDEEFEL" gene complement(2315924..2317692) /locus_tag="TCM_022031" /note="dbxref CacaoGD:Thecc1EG022031" mRNA complement(join(2315924..2316620,2316723..2316809, 2316891..2316969,2317307..2317692)) /locus_tag="TCM_022031" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.20 coverage" CDS complement(join(2316393..2316620,2316723..2316809, 2316891..2316969,2317307..2317587)) /locus_tag="TCM_022031" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07646.1" /translation="MPGNSSKIHMTIKFVSQKDIHFYIKLLGIIDDEVESCSVDEAKA ILKTSFYDESRNILQAPITQEEVKSTTFSLNGSKAHGPGGYTAQFFRAAWTSCSQYQR LWVPIELYAVDKGLCLHKDAEHCCCARKNDISSPMQEVCFADDLIPKHDLTHMQKHHR FSRTAAVRYLGVPLTELTSSFANKRFRVKWLVSLYLVDIGLGWAGIDSMVSVQHPQAC HDCEDG" mobile_element 2318513..2319625 /note="source:CACAO_on_E683_scaffold_9 1199 2311" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(2321801..2322720) /locus_tag="TCM_022033" /note="dbxref CacaoGD:Thecc1EG022033" mRNA complement(2321801..2322720) /locus_tag="TCM_022033" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene18170" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041937t1" /inference="similar to AA sequence:ricco:29836.m000558" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g10728t00001" CDS complement(2322060..2322482) /locus_tag="TCM_022033" /note="dbxref ricco:29836.m000558; paralog of Thecc1EG041937t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07647.1" /db_xref="TAIR:AT5G02640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HCB5" /translation="MTSVCISSCLNDARDPRVPVRATYVNLYKWPESDAEFVRSRSSG MHGHPRVVDGISCRQMYLRSYRFSRKETVPEKTVKCFGRVKDKVAHGKRRNSSQKRRI RRKCFVWRKVKVVFFRFFNRLLSCSASVDVVDQRNAFF" gene 2327772..2333926 /locus_tag="TCM_022034" /note="dbxref CacaoGD:Thecc1EG022034" mRNA join(2327772..2329693,2329929..2329998,2330097..2330218, 2330576..2331334,2331733..2331842,2332034..2332262, 2332388..2333926) /locus_tag="TCM_022034" /product="Endomembrane-type CA-ATPase 4 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g35960.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041938t1" /inference="similar to AA sequence:Phytozome:Glyma03g33240.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:PASA:2:TSA:puevd3b021330t1a2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc66t10" mRNA join(2327772..2329693,2329929..2329998,2330097..2330218, 2330576..2330857,2330957..2331334,2331733..2331842, 2332034..2332262,2332388..2333926) /locus_tag="TCM_022034" /product="Endomembrane-type CA-ATPase 4 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g35960.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041938t1" /inference="similar to AA sequence:Phytozome:Glyma19g35960.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc66t10" mRNA join(2327968..2329693,2329929..2329998,2330097..2330218, 2330576..2330857,2330957..2331334,2331733..2331842, 2332147..2332262,2332388..2333556) /locus_tag="TCM_022034" /product="Endoplasmic reticulum [ER]-type calcium ATPase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g35960.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041938t1" /inference="similar to AA sequence:Phytozome:Glyma03g33240.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc66t5; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc66t10" CDS join(2328278..2329693,2329929..2329998,2330097..2330218, 2330576..2331334,2331733..2331842,2332034..2332262, 2332388..2332969) /locus_tag="TCM_022034" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG041938t1" /codon_start=1 /product="Endomembrane-type CA-ATPase 4 isoform 2" /protein_id="EOY07649.1" /db_xref="Phytozome:Glyma03g33240.1" /db_xref="TAIR:AT1G07670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HPP7" /translation="MGKGGEGCGKGEMITSRPTADPDVFPAWAKDIQECEKRYQVNKK LGLSSAEVENRRKIYGYNELEKHEGQSIWSLILEQFNDTLVRILLVAAVVSFVLAWYD GEEGGEMEITAFVEPLVIFLILIVNAFVGVWQENNAEKALEALKEIQSEQATVIRDGV KIPNLPAKELVPGDIIELKVGDKVPADMRVLELVSSTLRVEQGSLTGESEAVNKTNKL VNEDADIQGKRSMVFAGTTVVNGNCFCLVTQIGMETEIGKVHAQIHVAAQSEEDTPLK KKLNEFGEVLTMIIGVVCVFVWLINVKYFLSWEFVDGWPRNFKFSFEKCTYYFEIAVA LAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTN QMAVAKLVAMGGDAGTLRSFRVDGTTYNPSDGKIHDWPSGGMDANLQTIAKIAAICND AGVTHSDNKFVAHGMPTEAAIKVLVEKMGLPKGSLSGGSAGSDILRCCQWWNEYERRI ATLEFDRDRKSMGVIVNSKSGRRSLLVKGAVENLLERSSKMQLCDGSVVPLDQNSRNL VSCALQDVSSCQLRCLGFAYKDELPEFETYDGGDDHPAHDLLLDPSNYSSIESNLTFV GLVGLRVSYIVSMTAFRIVLIIFFSGELIVLAAAFKCLQDPPREEVHQAIVDCKAAGI RVMVITGDNKDTAEAICREIGVFGPTEDISSNSLIGKEFMELLDKKAHLRQSGGLLFS RAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMV LADDNFSTIVAAIGEGRSIYDNMKAFIRYMISSNIGEVASIFLTAALGIPEGLIPVQL LWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLITAWILFRYLVIGLYVGMATVG VFVIWYTHGSFLGIDLSGDGHTLVRYSQLANWGQCSSWENFTVSPFTAGTQVFSFENN PCDYFQGGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFG LHFLILYVPFLAQVFGIVPLSFNEWLLVLAVAFPVILIDEILKFIGRSTSGIQSSRQR PLKPKSE" CDS join(2328278..2329693,2329929..2329998,2330097..2330218, 2330576..2330857,2330957..2331334,2331733..2331842, 2332034..2332262,2332388..2332969) /locus_tag="TCM_022034" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG041938t1" /codon_start=1 /product="Endomembrane-type CA-ATPase 4 isoform 1" /protein_id="EOY07648.1" /db_xref="Phytozome:Glyma19g35960.1" /db_xref="TAIR:AT1G07670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HPP7" /translation="MGKGGEGCGKGEMITSRPTADPDVFPAWAKDIQECEKRYQVNKK LGLSSAEVENRRKIYGYNELEKHEGQSIWSLILEQFNDTLVRILLVAAVVSFVLAWYD GEEGGEMEITAFVEPLVIFLILIVNAFVGVWQENNAEKALEALKEIQSEQATVIRDGV KIPNLPAKELVPGDIIELKVGDKVPADMRVLELVSSTLRVEQGSLTGESEAVNKTNKL VNEDADIQGKRSMVFAGTTVVNGNCFCLVTQIGMETEIGKVHAQIHVAAQSEEDTPLK KKLNEFGEVLTMIIGVVCVFVWLINVKYFLSWEFVDGWPRNFKFSFEKCTYYFEIAVA LAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTN QMAVAKLVAMGGDAGTLRSFRVDGTTYNPSDGKIHDWPSGGMDANLQTIAKIAAICND AGVTHSDNKFVAHGMPTEAAIKVLVEKMGLPKGSLSGGSAGSDILRCCQWWNEYERRI ATLEFDRDRKSMGVIVNSKSGRRSLLVKGAVENLLERSSKMQLCDGSVVPLDQNSRNL VSCALQDVSSCQLRCLGFAYKDELPEFETYDGGDDHPAHDLLLDPSNYSSIESNLTFV GLVGLRDPPREEVHQAIVDCKAAGIRVMVITGDNKDTAEAICREIGVFGPTEDISSNS LIGKEFMELLDKKAHLRQSGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPA LKLADIGIAMGIAGTEVAKEASDMVLADDNFSTIVAAIGEGRSIYDNMKAFIRYMISS NIGEVASIFLTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSD DSLITAWILFRYLVIGLYVGMATVGVFVIWYTHGSFLGIDLSGDGHTLVRYSQLANWG QCSSWENFTVSPFTAGTQVFSFENNPCDYFQGGKVKAMTLSLSVLVAIEMFNSLNALS EDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQVFGIVPLSFNEWLLVLAVAF PVILIDEILKFIGRSTSGIQSSRQRPLKPKSE" CDS join(2328278..2329693,2329929..2329998,2330097..2330218, 2330576..2330857,2330957..2331334,2331733..2331842, 2332147..2332222) /locus_tag="TCM_022034" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG041938t1" /codon_start=1 /product="Endoplasmic reticulum [ER]-type calcium ATPase isoform 3" /protein_id="EOY07650.1" /db_xref="Phytozome:Glyma03g33240.1" /db_xref="TAIR:AT1G07810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HPP7" /translation="MGKGGEGCGKGEMITSRPTADPDVFPAWAKDIQECEKRYQVNKK LGLSSAEVENRRKIYGYNELEKHEGQSIWSLILEQFNDTLVRILLVAAVVSFVLAWYD GEEGGEMEITAFVEPLVIFLILIVNAFVGVWQENNAEKALEALKEIQSEQATVIRDGV KIPNLPAKELVPGDIIELKVGDKVPADMRVLELVSSTLRVEQGSLTGESEAVNKTNKL VNEDADIQGKRSMVFAGTTVVNGNCFCLVTQIGMETEIGKVHAQIHVAAQSEEDTPLK KKLNEFGEVLTMIIGVVCVFVWLINVKYFLSWEFVDGWPRNFKFSFEKCTYYFEIAVA LAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTN QMAVAKLVAMGGDAGTLRSFRVDGTTYNPSDGKIHDWPSGGMDANLQTIAKIAAICND AGVTHSDNKFVAHGMPTEAAIKVLVEKMGLPKGSLSGGSAGSDILRCCQWWNEYERRI ATLEFDRDRKSMGVIVNSKSGRRSLLVKGAVENLLERSSKMQLCDGSVVPLDQNSRNL VSCALQDVSSCQLRCLGFAYKDELPEFETYDGGDDHPAHDLLLDPSNYSSIESNLTFV GLVGLRDPPREEVHQAIVDCKAAGIRVMVITGDNKDTAEAICREIGVFGPTEDISSNS LIGKEFMELLDKKAHLRQSGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPA LKLADIGIAMGIAGTEVAKEASDMVLADDNFSTIVAAIGEGRSIYDNMKAFIRWTTCN SIGIQSSRQGHHEEASSQK" gene 2334145..2341254 /locus_tag="TCM_022035" /note="dbxref CacaoGD:Thecc1EG022035" mRNA join(2334145..2334700,2336668..2339656,2341064..2341254) /locus_tag="TCM_022035" /product="ABC-2 type transporter family protein" /inference="alignment:exonerate-protein:2:frave:gene18128" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043012t1" /inference="similar to AA sequence:Phytozome:POPTR_0014s07600.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1658t1" mobile_element complement(2335050..2335289) /note="source:INTACT639F_F363_scaffold_5-int 8312 8568" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 2335148..2335320 /note="source:CACAO_on_E329_A_scaffold_147 4069 4254" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(2335317..2336515) /note="source:INTACT639F_F363_scaffold_5-int 7456 8551" /mobile_element_type="retrotransposon:LTR/Copia" CDS 2337063..2339291 /locus_tag="TCM_022035" /note="paralog of Thecc1EG043012t1" /codon_start=1 /product="ABC-2 type transporter family protein" /protein_id="EOY07651.1" /db_xref="Phytozome:POPTR_0014s07600.1" /db_xref="TAIR:AT2G37360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZUT0" /translation="MSFLGSAIKSSGKPVTGDNFPLFNSSKQMELQKYTKRAKPTVSP TLAELLMHVDDAQNDASGNNTPVDHRVLELGYACSSLPSSQPFVLSFNNLTYSVKVRK KLALPFCGEGSKLDSNEIHSKILLNDISGEAREGEIMAVLGASGSGKSTLIDALANRI AKESLKGSLTLNGEVLESRLLRVISAYVMQDDLLFPMLTVEETLMFSAEFRLPRSLSK KKKKARVQALIDQLGLRSAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPIVLFLDEP TSGLDSTSAFMVVKVLQRIAQSGSIVIMSVHQPSYRILSLLDRLIFLSHGHTVYSGSP GNLPHFFAEFGHPIPENENRTEFALDLIRELEETPGGTKSLVEFNTSWQARKNPRSGF SCKPNLSLKDAISASISRGKLVSGATNDSNLTSSVPTFANPFWIEMIVIAKRSMTNSK RMPELFGIRLGAVLVTGIILATMFWKLDNSPKGIQERLGFFAFAMSTTFYTCAEAIPV FLQERYIFMRETAYNAYRRSSYVLAHSLISIPALVVLSISFAATTFWAVGLAGGLSGF FFFFLTIFASFWAGSSFVTFLSGIVAHVMLGFTVVVAILAYFLLFSGFFISRDRIPLY WIWFHYISLVKYPYEAVLQNEFDDPTKCFVRGVQMFDNTPLGAVPVSLKLKLLQSMSS VLGVNITGSTCVTTGRGILVQQGITDISKWNCLWIIIAWGFLFRILFYFTLLLGSKNK RR" gene complement(2341088..2343937) /locus_tag="TCM_022036" /note="dbxref CacaoGD:Thecc1EG022036" mRNA complement(2341088..2343937) /locus_tag="TCM_022036" /product="ABC transporter G family member 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022037t1" /inference="similar to AA sequence:Phytozome:POPTR_0014s07600.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.22 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc7618t1" CDS complement(2341318..2343378) /locus_tag="TCM_022036" /note="paralog of Thecc1EG022037t1" /codon_start=1 /product="ABC transporter G family member 2" /protein_id="EOY07652.1" /db_xref="Phytozome:POPTR_0014s07600.1" /db_xref="TAIR:AT2G37360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZUT0" /translation="MEIEEFPSEEQQGLVLPTASSSIPILDPFVLSFNNLNYDVKVGR KSWFPFYRKNRNVSSENETRSLLKDISGEAREGEIMAILGASGSGKSTLIDALANRIA KHSLMGSITLNGEVLGSGILKVISAYVMQDDLLFPMLTVEETLMFSAEFRLPRSLSKS KKKARVQALIDQLGLRSAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPT SGLDSTSAFMVVKVLQRIAQSGSIVIMSIHQPSSRILGLLDRLIILSHGQALYSSSPA NLSQFFSDFGHPIPEKENPSEFALDFIRELEGAPSGTQNLVEFNKSWQTLTNVNDNIA SNRPSLALKDAISRSISRGKLVSGAIATSDLDHSSSVPSFANPFWIEVLVLSRRLLTN SRRMPAKFGVRLGTIMVTGIVLATMFWQLDDSPSGVQERLGCIAISIAAIFFNCITEV PTFIQERYIFMRETAYNAYRRSSYVLARSLIHIPLLFILSLFFSIITFWAVGLAGGLS GFLFFFFTTLASFWAGSSFAAFLSGLVPDVFLAFVIGIAIVSYFLFLCGFLVSRDRIP KYWIWLHYTSLVKYPYEALLQNEFLDPTKCFARGVQLFDQSALGTLPTSTKNDLLSSM GNVLGRNITSSTCLTTGKDILMQQGITKLSKWNRVWIIIAWGFFFRILFYLTLLFGSK SKRK" gene complement(2344032..2347300) /locus_tag="TCM_022037" /note="dbxref CacaoGD:Thecc1EG022037" mRNA complement(2344032..2347300) /locus_tag="TCM_022037" /product="ABC transporter G family member 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022036t1" /inference="similar to AA sequence:Phytozome:POPTR_0014s07600.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete" CDS complement(2344839..2346968) /locus_tag="TCM_022037" /note="paralog of Thecc1EG022036t1" /codon_start=1 /product="ABC transporter G family member 2" /protein_id="EOY07653.1" /db_xref="Phytozome:POPTR_0014s07600.1" /db_xref="TAIR:AT2G37360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZUT0" /translation="MELQQFSSEAQFSSSPTLEHLLKRDEITGKSDDHQVLDIPNTSS SIPALAPFLLSFNNLTYDVKVGPKSTFPCCGNTTIVSPDNKTKSLLNDITGEAREGEI MAILGASGSGKSTLIDALANKIDRHSLKGSVTLNGEALESGLLKVISAYVMQDDLLFP MLTVEETLMFSAEFRLPRSLSKSKKKARVQALIDQLGLRNAAKTVIGDEGHRGVSGGE RRRVSIGIDIIHDPILLFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSVHQPSSR IIGLLDSLIFLSHGQTLYSGSPANLPRFFNEFGHPFPENGNPSEFALDFIRELEETPF GTQKLVEFNKSWQASMNSNSNASNKPNLALRDAIKRSISRGKLVTGAVATIDVNLTSL VPSFANPFWVEVLVLFKRLVTNSRRIPEVFGVRLGAIIITGIILATMFWQIDNSPRGV QERLGCIAISISTIVYTCTTEAPEFIKERYIFMRETAYNAYRRSSYVLARSFISIPSL IILSLVFSTITFWAIGFSGGLSGFFFYFLTTLATFWAGSSFVAFLAGLFPDFFISFVI AIATTSYFLFFCGFLVSRDRLPKYWIWFHYTSLVKYPYEALLQNEFLQDPSKCFARGA QIFEQTTLGALPTSLKNDLLTSMGNVLGMNVTGSTCILMGKDIVKLQGLTDLNKWNCV WITMAWGFFYRILFNLTLLFGSKNKRN" mobile_element 2347693..2347841 /note="source:CACAO_Again_on_S_E290_scaffold_10 540 688" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(2347720..2347941) /note="source:scaffold_3_CACTA_0398 3284 3827" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2347942..2348332 /note="source:CACAO_on_SS_E42_scaffold_2 24149 24539" /mobile_element_type="transposon:TIR/Mutator" mobile_element 2348418..2348493 /note="source:INTACT599_F268_scaffold_9-int 12773 12842" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2348773..2349089) /note="source:INTACT639F_F363_scaffold_5-int 8237 8574" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 2348991..2349700 /note="source:CACAO_PIF_E278_scaffold_9 3741 4273" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(2349382..2350347) /note="source:INTACT639F_F363_scaffold_5-int 7467 8457" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 2350365..2350455 /note="source:CACAO_Mutator_E39_scaffold_1 4414 4504" /mobile_element_type="transposon:TIR/Mutator" gene complement(2350836..2353219) /locus_tag="TCM_022038" /note="dbxref CacaoGD:Thecc1EG022038" mRNA complement(join(2350836..2352082,2352179..2353219)) /locus_tag="TCM_022038" /product="ABC transporter G family member 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400053076" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022035t1" /inference="similar to AA sequence:Phytozome:POPTR_0014s07600.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1478t1" CDS complement(join(2351058..2352082,2352179..2353148)) /locus_tag="TCM_022038" /note="paralog of Thecc1EG022035t1" /codon_start=1 /product="ABC transporter G family member 2" /protein_id="EOY07654.1" /db_xref="Phytozome:POPTR_0014s07600.1" /db_xref="TAIR:AT3G53510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZUT0" /translation="MELQFLKQEENPGNHDSTSQNNQHQILEIPNSFSSSSPSNRFVL SFNNLTYTVEAGPKTLFPFNGKTVTVSRESNTKTILKDVSGEAREGEIMAILGASGSG KSTLIDALANRIAKHSLKGSVTLNGEVFESGLLKVISAYVMQDDLLFPMLTVEETLMF SAEFRLPRSLSTSKKKARVQALIDQLGLRSAAKTVIGDEGHRGVSGGERRRVSIGIDI IHDPVLLFLDEPTSGLDSTSAFMVVKVLQRIAQSGSIVLMSVHQPSYRILCLLDRLIF LSQGQTLYSGSPANLSEFFRDFGHPIPENENPAEFALDFIRELEETPYAINRSISRGK LVSQATNDLNPTSSVSSFANPFWIELLVLLKRLSINSRRMPEVFGIQLAAIVITGIIV ASMFWQLDDSPRGMQERLGCFAFVVSTTFYTCAHEVPEFIQERFIFMRETAYNTYRCS SYVLARSLISIPSLITLSIAFVTITFWTVGLAGGFPGFVFLLLTIFASFWAGSSFVAF LSALVSDVLVSFVVVVATLAYFTLFSGFFVSRNRLPGYWLWFHYLSIVKYPYEAVLLN EFRDPTKCFTRGVQIFDDTPLGKLPVSLQIDLLKTVGNALGTNITGSTCLTTGRDILL QQGVTELNKWNCFWIAIGWGFFFRILFYLTLLFGSKNKRK" gene 2354274..2357118 /locus_tag="TCM_022039" /note="dbxref CacaoGD:Thecc1EG022039" mRNA join(2354274..2354382,2354509..2354623,2355090..2355171, 2355289..2355375,2355448..2355543,2355668..2355855, 2355988..2356086,2356450..2357118) /locus_tag="TCM_022039" /product="RNA-binding family protein with retrovirus zinc finger-like domain, putative" /inference="alignment:exonerate- protein:2:TAIR:AT2G37340.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043024t3" /inference="similar to AA sequence:Phytozome:Glyma19g35990.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1650t1" CDS join(2354517..2354623,2355090..2355171,2355289..2355375, 2355448..2355543,2355668..2355855,2355988..2356086, 2356450..2356729) /locus_tag="TCM_022039" /note="paralog of Thecc1EG043024t3" /codon_start=1 /product="RNA-binding family protein with retrovirus zinc finger-like domain, putative" /protein_id="EOY07655.1" /db_xref="Phytozome:Glyma19g35990.1" /db_xref="TAIR:AT3G53500.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FYB7" /translation="MPRFDGRYGTTRLYVGRLSSRTRARDLEHIFSRYGRFLGFCLTW RPMVRGSALAELVEIPAQCYLSNDGLTVSSNNFRRIRDVDMKHDFAFVELSYPRDADG ARYSLDGRDFDGSCIIVELARGGPRGSREYLGRGPPPGSGRCFNCGIDGHWARDCRAG DWKNKCDRCGERGHIERNCKNSAKKLNRPGRSYSRSPVRSRSPHRGRSESRSFSRGRS YRSPARRERSIECDDRVESPEPKNIAPLSKGRKRSPTPDEDSSRQERGSPFPQNGKLA AQQNEANYSGSLRGVSTNPATLIEMRGLPEDGTKPY" gene 2355448..2358521 /locus_tag="TCM_022040" /note="dbxref CacaoGD:Thecc1EG022040" mRNA join(2355448..2355543,2355668..2355855,2355991..2356086, 2356441..2357465,2357683..2357761,2357859..2357946, 2358066..2358521) /locus_tag="TCM_022040" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s23180.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s23180.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1570t1" CDS join(2357229..2357465,2357683..2357761,2357859..2357946, 2358066..2358159) /locus_tag="TCM_022040" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07656.1" /db_xref="Phytozome:POPTR_0006s23180.1" /db_xref="TAIR:AT5G02710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HCB9" /translation="MSNITTLPRLGLVSSAHRPGKKGQKTTPKTKPSKSTMGFSAGRK ELWRCVENCGACCKLAKGPAFATPEEIFSDPSDIELYRSLIGPDGWCIHYEKATRTCS IYSERPYFCRVEPDIFKKLYGIENKKFNKEACSCCRDTIKAIYGPHSKELDNFNRSVK GSGSS" gene 2358574..2361025 /locus_tag="TCM_022041" /note="dbxref CacaoGD:Thecc1EG022041" mRNA join(2358574..2359289,2359384..2359533,2360287..2361025) /locus_tag="TCM_022041" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.88 coverage" CDS join(2358674..2359289,2359384..2359533,2360287..2360882) /locus_tag="TCM_022041" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07657.1" /translation="MAILLSQTLTSTMLLLVTLFALTATTESYCSDAMATSLLSGGFT RFLYTLHARNFTTATRLTYLAPPDSALMNHNLDEDSLRSHISTDGALTYQSLLSLSPN TTLSTLCNNTSLVVGTDGEKVSINDILVAVPNLYVDGSCVVHGVDGPLVPIPSSPPVD DFPKTRMTTMKSRVVPKRQTLQISVYSKFIRRGNPPSVTDKGGKPNNSQFIYFVLVIF FVSRVSIVSGRALFCIDLVMFMYYLFLMLEVETGTFLVVAVMSNLSSNKQETQVTEDY TSWFSNRYGIASAGEEPASLFDMCYLHPVSDLDYPPQETAYQSEHGRRSEYDCRYWLS EYDSCCGGYWGDDLFSAGEYSRNDDGCNEPVVKTEDCDQSEDQYPSYTSYCEEDLSQP DSYYNPWPCHQYCEDEDSCSCSGEEPRNTDGCRLDELGLCHGIFGYFPCLLREQQRNN NTQ" gene complement(2361024..2363853) /locus_tag="TCM_022042" /note="dbxref CacaoGD:Thecc1EG022042" mRNA complement(join(2361024..2361654,2362247..2362439, 2363112..2363188,2363483..2363853)) /locus_tag="TCM_022042" /product="Uncharacterized protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s08270.1" /inference="similar to AA sequence:Phytozome:GSVIVT01025578001" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:PASA:2:TSA:puevd3b021339t1a2; alternateUTRof:Thecc1EG022042t4; inference alignment:Newbler:10:TSA:cgbaP2_g10706t00001" mRNA complement(join(2361024..2361654,2362247..2362439, 2363112..2363284,2363483..2363853)) /locus_tag="TCM_022042" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s08270.1" /inference="similar to AA sequence:Phytozome:GSVIVT01025578001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:PASA:2:TSA:puevd3b021339t1a3; alternateUTRof:Thecc1EG022042t1; inference alignment:Newbler:10:TSA:cgbaP2_g10706t00001" mRNA complement(join(2361024..2361654,2362247..2362439, 2363112..2363284,2363483..2363567,2363655..2363797)) /locus_tag="TCM_022042" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s08270.1" /inference="similar to AA sequence:Phytozome:GSVIVT01025578001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g10706t00001" mobile_element 2361095..2361150 /note="source:scaffold_1_CACTA_0031 20 77" /mobile_element_type="transposon:TIR/CACTA" mRNA complement(join(2361106..2361654,2362247..2362439, 2363112..2363188,2363483..2363567,2363655..2363680)) /locus_tag="TCM_022042" /product="Uncharacterized protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s08270.1" /inference="similar to AA sequence:Phytozome:GSVIVT01025578001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2635t1; alternateUTRof:Thecc1EG022042t4; inference alignment:Newbler:10:TSA:cgbaP2_g10706t00001" mRNA complement(join(2361153..2361654,2362247..2362439, 2363112..2363188,2363483..2363853)) /locus_tag="TCM_022042" /product="Uncharacterized protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s08270.1" /inference="similar to AA sequence:Phytozome:GSVIVT01025578001" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1673t1; inference alignment:Newbler:10:TSA:cgbaP2_g10706t00001" mRNA complement(join(2361159..2361654,2362247..2362439, 2363112..2363284,2363483..2363772)) /locus_tag="TCM_022042" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s08270.1" /inference="similar to AA sequence:Phytozome:GSVIVT01025578001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaB_g10192t00001; alternateUTRof:Thecc1EG022042t1; inference alignment:Newbler:10:TSA:cgbaP2_g10706t00001" CDS complement(join(2361431..2361654,2362247..2362439, 2363112..2363188,2363483..2363561)) /locus_tag="TCM_022042" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY07661.1" /db_xref="Phytozome:GSVIVT01025578001" /db_xref="TAIR:AT3G53490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIX2" /translation="MSIRHLQNSRIFFRFLAWWILFSFFPGENRTELPDVTKTGVVYS FKGEESWQPLTELVSKKCKRCGFYEKDTIKADDIFAEWEFCSSDFKAPKYTLFKEEEF NATFHCPDCTSLPAASNTAPEKHDDGNGMHVAVVILISVLISTVTIVALVMAYKYWQK KKRQQDQARFLKLFEEGDDIEDELGLGTVI" CDS complement(join(2361431..2361654,2362247..2362439, 2363112..2363188,2363483..2363561)) /locus_tag="TCM_022042" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY07662.1" /db_xref="Phytozome:GSVIVT01025578001" /db_xref="TAIR:AT3G53490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIX2" /translation="MSIRHLQNSRIFFRFLAWWILFSFFPGENRTELPDVTKTGVVYS FKGEESWQPLTELVSKKCKRCGFYEKDTIKADDIFAEWEFCSSDFKAPKYTLFKEEEF NATFHCPDCTSLPAASNTAPEKHDDGNGMHVAVVILISVLISTVTIVALVMAYKYWQK KKRQQDQARFLKLFEEGDDIEDELGLGTVI" CDS complement(join(2361431..2361654,2362247..2362439, 2363112..2363188,2363483..2363561)) /locus_tag="TCM_022042" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY07663.1" /db_xref="Phytozome:GSVIVT01025578001" /db_xref="TAIR:AT3G53490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIX2" /translation="MSIRHLQNSRIFFRFLAWWILFSFFPGENRTELPDVTKTGVVYS FKGEESWQPLTELVSKKCKRCGFYEKDTIKADDIFAEWEFCSSDFKAPKYTLFKEEEF NATFHCPDCTSLPAASNTAPEKHDDGNGMHVAVVILISVLISTVTIVALVMAYKYWQK KKRQQDQARFLKLFEEGDDIEDELGLGTVI" CDS complement(join(2361431..2361654,2362247..2362439, 2363112..2363284,2363483..2363561)) /locus_tag="TCM_022042" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY07658.1" /db_xref="Phytozome:GSVIVT01025578001" /db_xref="TAIR:AT3G53490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIX2" /translation="MSIRHLQNSRIFFRFLAWWILFSFFPGLISSAVVTLDSIEIFKT HELIGKPTVYFLCKGENRTELPDVTKTGVVYSFKGEESWQPLTELVSKKCKRCGFYEK DTIKADDIFAEWEFCSSDFKAPKYTLFKEEEFNATFHCPDCTSLPAASNTAPEKHDDG NGMHVAVVILISVLISTVTIVALVMAYKYWQKKKRQQDQARFLKLFEEGDDIEDELGL GTVI" CDS complement(join(2361431..2361654,2362247..2362439, 2363112..2363284,2363483..2363561)) /locus_tag="TCM_022042" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY07659.1" /db_xref="Phytozome:GSVIVT01025578001" /db_xref="TAIR:AT3G53490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIX2" /translation="MSIRHLQNSRIFFRFLAWWILFSFFPGLISSAVVTLDSIEIFKT HELIGKPTVYFLCKGENRTELPDVTKTGVVYSFKGEESWQPLTELVSKKCKRCGFYEK DTIKADDIFAEWEFCSSDFKAPKYTLFKEEEFNATFHCPDCTSLPAASNTAPEKHDDG NGMHVAVVILISVLISTVTIVALVMAYKYWQKKKRQQDQARFLKLFEEGDDIEDELGL GTVI" CDS complement(join(2361431..2361654,2362247..2362439, 2363112..2363284,2363483..2363561)) /locus_tag="TCM_022042" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY07660.1" /db_xref="Phytozome:GSVIVT01025578001" /db_xref="TAIR:AT3G53490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIX2" /translation="MSIRHLQNSRIFFRFLAWWILFSFFPGLISSAVVTLDSIEIFKT HELIGKPTVYFLCKGENRTELPDVTKTGVVYSFKGEESWQPLTELVSKKCKRCGFYEK DTIKADDIFAEWEFCSSDFKAPKYTLFKEEEFNATFHCPDCTSLPAASNTAPEKHDDG NGMHVAVVILISVLISTVTIVALVMAYKYWQKKKRQQDQARFLKLFEEGDDIEDELGL GTVI" gene 2364984..2366039 /locus_tag="TCM_022043" /note="dbxref CacaoGD:Thecc1EG022043" mRNA 2364984..2366039 /locus_tag="TCM_022043" /product="CAP, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025577001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005149t1" /inference="similar to AA sequence:Phytozome:GSVIVT01025577001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc864t1" CDS 2365145..2365855 /locus_tag="TCM_022043" /note="paralog of Thecc1EG005149t1" /codon_start=1 /product="CAP, putative" /protein_id="EOY07664.1" /db_xref="Phytozome:GSVIVT01025577001" /db_xref="TAIR:AT3G09590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TQC6" /translation="MATTRTLFPQSLAAALTIFSLLFIAASAQAIPQQNSKPRNNIQK NGNANGKPRRPPTTAELAKKIKSASFVKEAVSAHNAARVTIGQTPMVWNYTLAYFAKQ WAKKRLNDCKLIHSYGPYGENLFWGGKSHWTPSEVVKFWVEEKAYYDPKSNTCATGQM CGHYTQIVWKDSVRVGCARINCYNGKGMYVICSYDPPGNYINEHPFGDLANIDNVNKI ALPPLWKPPVVAPTLPVH" gene complement(2366276..2368660) /locus_tag="TCM_022044" /note="dbxref CacaoGD:Thecc1EG022044" mRNA complement(join(2366276..2366746,2367066..2367311, 2368197..2368660)) /locus_tag="TCM_022044" /product="Aluminum sensitive 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025576001" /inference="similar to AA sequence:ricco:29805.m001522" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaL_g10747t00001" CDS complement(join(2366432..2366746,2367066..2367311, 2368197..2368430)) /locus_tag="TCM_022044" /note="dbxref ricco:29805.m001522" /codon_start=1 /product="Aluminum sensitive 3" /protein_id="EOY07665.1" /db_xref="TAIR:AT2G37330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZUT3" /translation="MDWDWLFEFLKGMVKPVAALSVVLMAVLLSFMQKLGLEKEMIYS ILRAFLQLSVIGFVLQFIFNQENSGWIVLAYLFMVSVAGYTAGQRAKHVPRGKYVAGI SILAGTAVTMFLLVILNVFPFTPRYVIPVAGMMVGNAMTVTGVTMKRLRDDIKIQMNL VETALALGATPRQATLEQVKRALVIALSPVLDNAKTVGLISLPGAMTGLIMGGASPIE AIHLQIVVMNMLIGASTVSSIMSTYLCWPAFFTKAYQLETKVFSSD" mobile_element 2370153..2370254 /note="source:CACAO_MITE128_scaffold_8 476 584" /mobile_element_type="transposon:TIR/MITE" mobile_element 2372480..2372658 /note="source:scaffold_1_CACTA_0008 13998 14179" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2372957..2373041) /note="source:CACAO_MITE_S167_scaffold_6 1 89" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(2373359..2373446) /note="source:scaffold_6_CACTA_0717 7104 7199" /mobile_element_type="transposon:TIR/CACTA" gene 2374208..2376219 /locus_tag="TCM_022045" /note="dbxref CacaoGD:Thecc1EG022045" mRNA join(2374208..2374399,2374509..2374644,2374804..2374888, 2375005..2375052,2375713..2376219) /locus_tag="TCM_022045" /product="Ribosomal protein S24e family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025575001" /inference="similar to AA sequence:Phytozome:GSVIVT01025575001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g06147t00001" CDS join(2374222..2374399,2374509..2374644,2374804..2374888, 2375005..2375052,2375713..2375952) /locus_tag="TCM_022045" /codon_start=1 /product="Ribosomal protein S24e family protein, putative" /protein_id="EOY07666.1" /db_xref="Phytozome:GSVIVT01025575001" /db_xref="TAIR:AT5G02740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TQC4" /translation="MNLLRNAIKSHVSVRTIRPMQALPSFLGASPKRFSTGTDEPQPP QPDASVNQFMESASKGFVFAKLHGITKHTMKSDIMSLLEGCNLTADDIKVHYSRSFFP LGMMLRFSSPAAFSNSARTIRRFDRLYRLEKVEASDWDIVRPYNGKTVLLLGIPRNAL VEDVERFLSGCDYDPSSIQMVTVPKPGTPVPFRFTTVRFPSQIQAMNACISKNRNVCL NNQLSVRVLH" mobile_element 2375223..2375283 /note="source:CACAO_M_E42586_F54_scaffold_5 1741 1803" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(2376569..2378880) /locus_tag="TCM_022046" /note="dbxref CacaoGD:Thecc1EG022046" mRNA complement(2376569..2378880) /locus_tag="TCM_022046" /product="Tetratricopeptide repeat-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025574001" /inference="similar to AA sequence:Phytozome:POPTR_0016s08300.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.13 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc2015t1" gene 2376732..2377236 /locus_tag="TCM_022047" /note="dbxref CacaoGD:Thecc1EG022047" mRNA 2376732..2377236 /locus_tag="TCM_022047" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1248t1" CDS 2376884..2377135 /locus_tag="TCM_022047" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07668.1" /translation="MTTLCGNKHLDHQFTANFAIRIALMIQIDHNCSKPDQEYGHFHP RSIHHVVGFTKMSLNVSMHFEEACLSILIRALYPMQHIA" CDS complement(2377237..2378787) /locus_tag="TCM_022046" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative" /protein_id="EOY07667.1" /db_xref="Phytozome:POPTR_0016s08300.1" /db_xref="TAIR:AT2G37320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZUT4" /translation="MNTLLLKSIIQRNSCFKPLLFFLSQSIPFSSYKLKLNPPSKVLR IMDIMSPKPTPTPRQNHLRLIQDFLQSDSDQFTAQHFVNDFVYSDSPTENLPIFFNEI LAPPVTNKDISKFNPIVLSNAISSCGSKRNLYGGIQYHCLAIKTGFFPNVYVGSSLVT SYGKCGELEEAYKVFDEMPVKNVVSWTTIIAGFAQEWQIDMCLELYNMMKNLTLKPND FTLTSLLRACTGSGALGQGRSAHCQVIQMGFDSYSYICNALISMYCKCGSVEDAMFIF KKMAGNKDIVSWNSMIAGYAQHGLAMEAIDLFEKMKEEKIKPDSITFLGVLSSCRHAG LVEQGRVYFDSMVVHGVEPALDHYSCVVDLLGRAGLLKEAREFILKMPICPNAVIWGS LLSSCRLHGIIWVGIEAAESRLLLEPGCAATHVQLANLYASARRWDQAARVRKLMKDK GLKTSPGYSWIEVKNEVYRFRAEDKSNSKVTEIHGVLGRLVNHMRTLDYGQQMHEEEV DDALCSTI" gene complement(2379005..2382190) /locus_tag="TCM_022048" /note="dbxref CacaoGD:Thecc1EG022048" mRNA complement(join(2379005..2381449,2382009..2382190)) /locus_tag="TCM_022048" /product="Nfrkb-like protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025574001" /inference="similar to AA sequence:ricco:30039.m000237" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.27 coverage" CDS complement(join(2379383..2381449,2382009..2382026)) /locus_tag="TCM_022048" /note="dbxref ricco:30039.m000237" /codon_start=1 /product="Nfrkb-like protein" /protein_id="EOY07669.1" /db_xref="TAIR:AT3G45830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T3J5" /translation="MRKQIEMSMIAKKRIRVESVPEADDIVNDGEIPDFSNQARLSLA LNPNKRGKQVRVSKLKDIGSNVISTRKLGIQSPSIQSGIKRKYLEIDGSMRELSCKEH EAQFCNISRTANRARMGPRSSDGGMEIAERRNPTQRDIEAALALMQLSNDISGLLKTK MQSPSSKEDCLIQRNQNIRKVGGGSTWLQSEYINDDAVEQHNLYKRYQKFGTKEVSLL KRRKAADRTQMGTKVEHDYHRIKAEKDLEEGELPISSLKRKKLPKSSLEKCGLKKVQA EPGLFEGSTACSSFTVSAVGNSTVPEPKPFKKLQFNSICPTAHKGFSFSIIHFLSAIR IAMITPVAKGDPLAFSKYAAKSNPKSVNRSHERKGMSNSQGEQINLPCLTMHEIVERV RWNPGDPCILEAQEPLQDLVRGALKLFSSTTAPPGAKAWKALTLYSKSNKSWSWIGPV AIKPHNNMKETVSSEAWGLPRSTLLKLTNSFADWLKIAQESLQKIRNLPEPPLTLMHQ TVNMKERLREVRPRKIVATISRCPEEIRDYFRKEEAVRYSVPERAFSYTALDGRKSAV APVRRCSGKPSLKCREHFMLKADRPPNITVLTLVRDAAARLPAGMGTRADVCVLIRDS QYIVEDISEEQLSQVVSGALDRLHCEHDPCVQFNRERRLWFYLHGDREEDDFEHDATS SIKKRRRQREIP" gene 2382512..2383031 /locus_tag="TCM_022049" /note="dbxref CacaoGD:Thecc1EG022049" mRNA 2382512..2383031 /locus_tag="TCM_022049" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1613t1_C1" CDS 2382737..2382991 /locus_tag="TCM_022049" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07670.1" /translation="MRKMSSSLTSCLLSCSICLIYWTLGIRKVSVWKIEDCFNCLEVI KPIEFSLKGTMQERNGKWTCKLFKEDIKAKILNCKSLFLQ" gene complement(2383253..2384037) /locus_tag="TCM_022050" /note="dbxref CacaoGD:Thecc1EG022050" mRNA complement(2383253..2384037) /locus_tag="TCM_022050" /product="Disease resistance-responsive family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025574001" /inference="similar to AA sequence:Phytozome:POPTR_0006s23250.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1694t1" CDS complement(2383279..2383779) /locus_tag="TCM_022050" /codon_start=1 /product="Disease resistance-responsive family protein, putative" /protein_id="EOY07671.1" /db_xref="Phytozome:POPTR_0006s23250.1" /db_xref="TAIR:AT3G58090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HCC5" /translation="MEKKSEEAESESGVYELPGEPAVVINGVPEINPNCNTLVLSNVE KEDGESQKDEGCGEWLEGREVRKLFGERYYRGSVIQFDKETGWYRVEYEDGDSEDLDW HELEEVLLPVDITIPLKAVAVKLLKKNQKAAIHKPGNLVAAGSAIQKAKHVGKKGKMS EAHKEA" gene 2383985..2386878 /locus_tag="TCM_022051" /note="dbxref CacaoGD:Thecc1EG022051" mRNA 2383985..2386878 /locus_tag="TCM_022051" /product="Pentatricopeptide repeat (PPR) superfamily protein, putative" /inference="alignment:exonerate-protein:2:frave:gene18118" /inference="similar to AA sequence:frave:gene18118" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1696t1" CDS 2384218..2386221 /locus_tag="TCM_022051" /note="dbxref frave:gene18118" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein, putative" /protein_id="EOY07672.1" /db_xref="TAIR:AT2G37310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZUT5" /translation="MRIANPLLNKLQPPPTTFTSKTQESLRTLHPSNTNLNYGAYGHI IQHFTDHSHPRQAKQLHARIVLSSVTPDNFLASKLISFYSKINHLPQAHHLFDKIPNK NTFSFNALLIAYSQHNMFADTLRLFSSVDNVIRPDNYTVTCLLKALSGSFCDKRLAKE VHCFVLRGGFNEDIFVSNGLITYYSKCEEFGLARIVFDKMGERDIVSWNSMISGYSHG GFYEECKALYREMVDSLECRPNGVTVLSVLQACGQSNDLILGMEVHQCIVENRIEMDV SVCNALIGLYAKCGSLDYARELFEGMSDKDEVTYGALIYGFMFHGFSDKAMELFCELK LPGLSTWNSVISGLFQNKQYDRILDLVREMQSCGFRPNTVTLSSILPTFSYFSNLKGG KEIHAYAVRNNYDRSIYVATALIDTYAKLGFLCGAQRVFDQSKCRSLIIWTAIIAAYS AHGDVNAALGYFHEMLNNGIQPDPVTFTAVLSACAHSGMVDEAQKIFDAMLEEYGISP SVEHYACMVGVLSRAGRLSEAKEFISKMPIEPSAKVWGALLNGASVCADAELGKFICD RLFEMEPENTGNYIIMANLYSKAGRWKEADMIREKMRNAGLKKIPGASWIETSGGLQS FIAKDRSSERTEEIYVLLEGLLGLMKEEGYTLHDEYDEENVYV" gene 2387074..2387822 /locus_tag="TCM_022052" /note="dbxref CacaoGD:Thecc1EG022052" mRNA 2387074..2387822 /locus_tag="TCM_022052" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.92 coverage" CDS 2387440..2387643 /locus_tag="TCM_022052" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07673.1" /translation="MGEKDLTNMLRSTKFLSPKALKNGGMDSFTMQGEKEAEFVSVKA RQLTVMSAQASPASPPLHGCFRF" mobile_element complement(2388306..2388857) /note="source:scaffold_4_CACTA_0511 13209 13817" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2388866..2389202) /note="source:scaffold_4_CACTA_0511 12909 13308" /mobile_element_type="transposon:TIR/CACTA" gene 2389234..2390483 /locus_tag="TCM_022053" /note="dbxref CacaoGD:Thecc1EG022053" mRNA 2389234..2390483 /locus_tag="TCM_022053" /product="RING/U-box superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:29805.m001516" /inference="similar to AA sequence:Phytozome:POPTR_0016s08350.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1676t1" CDS 2389362..2390198 /locus_tag="TCM_022053" /codon_start=1 /product="RING/U-box superfamily protein, putative" /protein_id="EOY07674.1" /db_xref="Phytozome:POPTR_0016s08350.1" /db_xref="TAIR:AT5G02750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HCC7" /translation="MMMEEETTMMAALSTLRPSQLSDLSYSILSLSFHQRRRLCFLLS SPCLFSLTLHHLHSLSLPNKTLLIARHLLFSLHHITRHFQPPPLRPIQFSAAMKHRDL DAVLLLLFLCETHQHNPKALQRPHAEWREVLSNICSDTMLRITGITGVFDGAALIPYI EMVTRCRRFVGILGCGGKEGREVAASPVAVVALPTVEVRRGGVECVICKEEMREGRDV CKLPCQHLFHWMCILPWLKKKNTCPCCRFQLPCDDIFDEIHRLWGVLVKASGKSLDGE WT" mobile_element complement(2394436..2395514) /note="source:INTACT639F_F363_scaffold_5-int 7472 8581" /mobile_element_type="retrotransposon:LTR/Copia" gene 2396500..2398715 /locus_tag="TCM_022054" /note="dbxref CacaoGD:Thecc1EG022054" mRNA join(2396500..2396876,2396960..2397080,2397198..2397622, 2397736..2398715) /locus_tag="TCM_022054" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29805.m001515" /inference="similar to AA sequence:Phytozome:POPTR_0016s08360.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05766t00001" CDS join(2396842..2396876,2396960..2397080,2397198..2397622, 2397736..2397985) /locus_tag="TCM_022054" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07675.1" /db_xref="Phytozome:POPTR_0016s08360.1" /translation="MIACNKEDNKWSERKMEGDDGLRTVECLRGRLLAERQASRTAKE DAELMGNKLIELENKLKEETKLRNKAEKRLKLLKKKLESLKILPSLEESEQSSSSENC AVSSVSSTSTSGAKDPEESASKSQNAVPEISKNVEENASDTTTSIKSLQIPFSEENAT SPGTAQSDSKDSSHKKSSGTSSSNPEDPKIGDTSSSSLKASTMEIDMKGRNENYEDDD YVDNSMALVPLKLPETKLAPEIKIVSKSIGEVLDTLRHARERIQNSMERRQMIRVGPS " gene 2399117..2400625 /locus_tag="TCM_022055" /note="dbxref CacaoGD:Thecc1EG022055" mRNA 2399117..2400625 /locus_tag="TCM_022055" /product="Cyclin F-box" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015901t1" /inference="similar to AA sequence:frave:gene04568" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS 2399195..2400379 /locus_tag="TCM_022055" /note="dbxref frave:gene04568; paralog of Thecc1EG015901t1" /codon_start=1 /product="Cyclin F-box" /protein_id="EOY07676.1" /translation="MKNAKADWKNLPTLPLFLILEKLDVPNNLVRFGVVCKYWHSVFN NFLDSKRRSSLTLVPMLLIPSKKRNIGRKLYSLQAKAKIYSIGLPESHTKRSFSCCYG WLAAVDKKLVITLLNPFKGGITIDLPEIEIETYQRSSLGYQHDIKKVFLSIDPLLHPD DYIVVTIYSIYSKLAFYKPGQRSWIYLDKNIMLIHDVIFYKNLVYAIGSWNKIISFDV SIDNLDDTWKSPNLKTVISAQYQRLKDYIYRAHLFESSKGDLFSIYREWGAVDDNDHL VRFTKNFKVYKLVLDDQSGELLEEKEVKNINGDIVFVGNNQTLAVSALDFPEAQPNSI YFTDDYFIGSYYKPYGPRDIGFFNLQNGSMGKHYQFEPQHTFLSPYIWILPSVKCKLG SA" gene 2401894..2404556 /locus_tag="TCM_022056" /note="dbxref CacaoGD:Thecc1EG022056" mRNA join(2401894..2402740,2403175..2403542,2403653..2403889, 2404005..2404556) /locus_tag="TCM_022056" /product="Phosphatase 2C family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025572001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043030t4" /inference="similar to AA sequence:Phytozome:GSVIVT01025572001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1763t2" CDS join(2402464..2402740,2403175..2403542,2403653..2403889, 2404005..2404199) /locus_tag="TCM_022056" /note="paralog of Thecc1EG043030t4" /codon_start=1 /product="Phosphatase 2C family protein" /protein_id="EOY07677.1" /db_xref="Phytozome:GSVIVT01025572001" /db_xref="TAIR:AT3G12620.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F2E607" /translation="MIKSCWKPTVEGDSGRVDGLLWYKDLGQHVYGEFSMAVIQANSL LEDQSQLESGPLSSSSSGPYGIFIGVYDGHGGPEASRFINDNLFCNLKSFVSEHQEIS INVLRKAFSATEENFLSLVRKQWLGKPQMASVGSCCLTGAICNGLLYIANVGDSRVVL GRAERGAREVIAMQLSTEHNASIDAVRDELRSLHPHDPQIVVMKHKVWRVKGLIQISR SIGDAYLKKAEFNKEPLLPKFRLPESFQKPILSAEPSLLVHKLHPDDQFLIFASDGLW EHLSNQEAVKIVQTSPRNGIARRLVKAALKEAAKKREMRYSDLKKIDRGVRRHFHDDI TVIVVFLDPNLINGGSSYSSPLSI" gene complement(2405239..>2408494) /locus_tag="TCM_022057" /note="dbxref CacaoGD:Thecc1EG022057" mRNA complement(join(2405239..2405283,2405396..2405416, 2406611..2406755,2406883..2406947,2407051..2407111, 2407232..2407363,2407456..2407536,2408003..2408494)) /locus_tag="TCM_022057" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025570001" /inference="similar to AA sequence:frave:gene18113" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc273t4" mRNA complement(join(2405389..2405416,2406611..2406755, 2406883..2406947,2407051..2407111,2407232..2407347, 2407410..2407418,2407458..2407536,2408003..>2408494)) /locus_tag="TCM_022057" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025570001" /inference="similar to AA sequence:frave:gene18113" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog weak, intron is strong, protein is partial5; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc273t8; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc273t4; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc281t1" mRNA complement(join(2405389..2405416,2406611..2406755, 2406852..2406947,2407051..2407111,2407232..2407363, 2407456..2407536,2408003..>2408494)) /locus_tag="TCM_022057" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025570001" /inference="similar to AA sequence:frave:gene18113" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog weak, intron is strong, protein is partial5; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc273t5; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc273t4; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc281t1" mRNA complement(join(2405389..2405416,2406611..2406755, 2406883..2406947,2407051..2407363,2407456..2407536, 2408003..>2408494)) /locus_tag="TCM_022057" /product="Uncharacterized protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025570001" /inference="similar to AA sequence:Phytozome:Glyma19g36050.1" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog weak, intron is strong, protein is partial5; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc273t3; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc273t4; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc281t1" mRNA complement(join(2406614..2406755,2406883..2407111, 2407232..2407364,2407448..2407536,2408003..>2408494)) /locus_tag="TCM_022057" /product="Uncharacterized protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025570001" /inference="similar to AA sequence:Phytozome:Glyma03g33330.1" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog weak, intron is medium, protein is partial5; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc272t5; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc273t4; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc281t1" CDS complement(join(2406909..2406947,2407051..2407111, 2407232..2407347,2407410..2407418,2407458..2407536, 2408003..>2408493)) /locus_tag="TCM_022057" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene18113" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY07680.1" /db_xref="TAIR:AT5G02770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SGT8" /translation="KIQQVLPDPNYLREKEKKKRDCPSSPHALRHRLYISRNPNCRHT TPMATTTEKPVATATTTTTTAPAPVAAANSSAEPNPKKTVDSPPPSTGKSDPPSAVAP AAAEVSLKESEGSKITGTTVSSVAGDSGGSVNDIQKKIRRAERFGVPVQLSEQEKRNS RAERFGTAPSSNGSEAAKQSEELKRKARAEGLGPSAATTDEEAKKKARLARFAPYSKT DSVEEEKRKARAIRFSNPPSGSLPQVNGKGNLDPEAPIAGKAGGGP" CDS complement(join(2406909..2406947,2407051..2407111, 2407232..2407363,2407456..2407536,2408003..>2408493)) /locus_tag="TCM_022057" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene18113" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY07679.1" /db_xref="TAIR:AT5G02770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SGT8" /translation="KIQQVLPDPNYLREKEKKKRDCPSSPHALRHRLYISRNPNCRHT TPMATTTEKPVATATTTTTTAPAPVAAANSSAEPNPKKTVDSPPPSTGKSDPPSAVAP AAAEVSLKESEGSKITGTTVSSVAGDSGGSVNDIQKKIRRAERFGVPVQLSEQEKRNS RAERFGTAPSSNGSEAAKQSEELKRKARAERFGLAVPSAATTDEEAKKKARLARFAPY SKTDSVEEEKRKARAIRFSNPPSGSLPQVNGKGNLDPEAPIAGKAGGGP" CDS complement(join(2406909..2406947,2407051..2407111, 2407232..2407363,2407456..2407536,2408003..2408355)) /locus_tag="TCM_022057" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene18113" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY07678.1" /db_xref="TAIR:AT5G02770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SGT8" /translation="MATTTEKPVATATTTTTTAPAPVAAANSSAEPNPKKTVDSPPPS TGKSDPPSAVAPAAAEVSLKESEGSKITGTTVSSVAGDSGGSVNDIQKKIRRAERFGV PVQLSEQEKRNSRAERFGTAPSSNGSEAAKQSEELKRKARAERFGLAVPSAATTDEEA KKKARLARFAPYSKTDSVEEEKRKARAIRFSNPPSGSLPQVNGKGNLDPEAPIAGKAG GGP" mRNA complement(join(2406918..2407111,2407232..2407347, 2407410..2407418,2407458..2407536,2408003..>2408494)) /locus_tag="TCM_022057" /product="Uncharacterized protein isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025570001" /inference="similar to AA sequence:Phytozome:Glyma03g33330.1" /note="transcript variant 6; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog weak, intron is medium, protein is partial5; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc273t6; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc273t4; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc281t1" CDS complement(join(2407039..2407111,2407232..2407347, 2407410..2407418,2407458..2407536,2408003..>2408493)) /locus_tag="TCM_022057" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 6" /protein_id="EOY07683.1" /db_xref="Phytozome:Glyma03g33330.1" /db_xref="TAIR:AT5G02770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZ08" /translation="KIQQVLPDPNYLREKEKKKRDCPSSPHALRHRLYISRNPNCRHT TPMATTTEKPVATATTTTTTAPAPVAAANSSAEPNPKKTVDSPPPSTGKSDPPSAVAP AAAEVSLKESEGSKITGTTVSSVAGDSGGSVNDIQKKIRRAERFGVPVQLSEQEKRNS RAERFGTAPSSNGSEAAKQSEELKRKARAEGLGPSAATTDEEAKKKARLARFAPYSKT DSVEEEKRKARAIRFSNPPSGSLPQVNGKGNLDPVRP" CDS complement(join(2407039..2407111,2407232..2407364, 2407448..2407536,2408003..>2408493)) /locus_tag="TCM_022057" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 5" /protein_id="EOY07682.1" /db_xref="Phytozome:Glyma03g33330.1" /db_xref="TAIR:AT5G02770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZ08" /translation="KIQQVLPDPNYLREKEKKKRDCPSSPHALRHRLYISRNPNCRHT TPMATTTEKPVATATTTTTTAPAPVAAANSSAEPNPKKTVDSPPPSTGKSDPPSAVAP AAAEVSLKESEGSKITGTTVSSVAGDSGGSVNDIQKKIRRAERFGVPVQLSEQEKRNS RAERFGTAPSSNGSEAAKQSEELKRKARAERFSWFGLAVPSAATTDEEAKKKARLARF APYSKTDSVEEEKRKARAIRFSNPPSGSLPQVNGKGNLDPVRP" CDS complement(join(2407219..2407363,2407456..2407536, 2408003..>2408493)) /locus_tag="TCM_022057" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY07681.1" /db_xref="Phytozome:Glyma19g36050.1" /db_xref="TAIR:AT5G02770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZ08" /translation="KIQQVLPDPNYLREKEKKKRDCPSSPHALRHRLYISRNPNCRHT TPMATTTEKPVATATTTTTTAPAPVAAANSSAEPNPKKTVDSPPPSTGKSDPPSAVAP AAAEVSLKESEGSKITGTTVSSVAGDSGGSVNDIQKKIRRAERFGVPVQLSEQEKRNS RAERFGTAPSSNGSEAAKQSEELKRKARAERFGLAVPSAATTDEEAKKKARLARFAPY SKTDSVEEEKRKARAIRFHC" mobile_element complement(2409479..2411249) /note="source:scaffold_9_CACTA_0943 9262 10857" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2410557..2411309) /note="source:INTACT697_F302_scaffold_2-int 1489 2261" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2411297..2411582 /note="source:scaffold_4_CACTA_0491 1220 1507" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2411457..2412164) /note="source:scaffold_6_CACTA_0702 8459 9183" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2411717..2412267) /note="source:CACAO_M_E43498_F302_scaffold_5 176 721" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2411766..2412344) /note="source:INTACT563_F255_scaffold_10-int 17228 17746" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 2412907..2413726 /note="source:CACAO_M_E34382_F2_scaffold_5 1 820" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2413865..2419194 /locus_tag="TCM_022058" /note="dbxref CacaoGD:Thecc1EG022058" mRNA join(2413865..2414439,2414537..2414611,2414726..2414826, 2414931..2415007,2415170..2415257,2415429..2415509, 2415607..2415663,2415835..2415919,2416121..2416170, 2416341..2416397,2416485..2416563,2416643..2416701, 2416998..2417055,2417154..2417247,2417696..2418369, 2418811..2419194) /locus_tag="TCM_022058" /product="TerC integral membrane domain-containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g05470.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s13620.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00200t00002" mRNA join(2414150..2414439,2414537..2414611,2414729..2414826, 2414931..2415007,2415170..2415257,2415429..2415509, 2415607..2415663,2415835..2415919,2416121..2416170, 2416341..2416397,2416485..2416563,2416643..2416701, 2416998..2418229) /locus_tag="TCM_022058" /product="TerC integral membrane domain-containing protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g05470.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s13620.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:PASA:2:TSA:puevd3b021354t1a2; inference alignment:Newbler:10:TSA:cgbaB_g00200t00002" mRNA join(2414150..2414439,2414537..2414611,2414729..2414826, 2414931..2415007,2415170..2415257,2415429..2415509, 2415607..2415663,2415835..2415919,2416121..2416170, 2416341..2416397,2416485..2416563,2416643..2416701, 2416998..2417055,2417154..2418229) /locus_tag="TCM_022058" /product="TerC integral membrane domain-containing protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g05470.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s13620.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1718t4; alternateUTRof:Thecc1EG022058t2; inference alignment:Newbler:10:TSA:cgbaB_g00200t00002" mRNA join(2414218..2414439,2414537..2414611,2414729..2414826, 2414931..2415007,2415170..2415257,2415429..2415509, 2415607..2415663,2415835..2415919,2416121..2416170, 2416341..2416397,2416485..2416563,2416643..2416701, 2416998..2417055,2417154..2417272,2417677..2418074) /locus_tag="TCM_022058" /product="TerC integral membrane domain-containing protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g05470.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s13620.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00200t00002; inference alignment:Newbler:10:TSA:cgbaB_g00200t00002" CDS join(2414289..2414439,2414537..2414611,2414726..2414826, 2414931..2415007,2415170..2415257,2415429..2415509, 2415607..2415663,2415835..2415919,2416121..2416170, 2416341..2416397,2416485..2416563,2416643..2416701, 2416998..2417055,2417154..2417247,2417696..2417963) /locus_tag="TCM_022058" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="TerC integral membrane domain-containing protein isoform 1" /protein_id="EOY07684.1" /db_xref="Phytozome:POPTR_0006s13620.1" /db_xref="TAIR:AT5G12130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JZG9" /translation="MGLASAVHHGGGIRIALNFDRRVAPISPPVQAPRWTKLRFAHPR LSTIQSVINIRRTQYFPVVRSRGMEQEDLSTAEGERIASYSYADSEEKLQENETYASS VKTVALWVCAAVAFGVGLGLKEGVGPASEYFAGYILEQSLSVDNLFVFVLIFKYFKVP HMYQNRVLSYGIAGAVIFRLSLILLGTATLQRFEIVNLLLAAVLLFSSFKLFSDDDED DSDLSNNFIVKTCRRFIPVTTNYDGNRFITKQDGNWIATPLLLTVAVIELSDIAFAVD SIPAVFGVTRDPFIVFSSNLFAILGLRSLYTLIAEGMADLEYLQPSIGVVLGFIGCKM ILDFFGFHISTEASLGFVAASLGAGVLLSLAKKADLLDRSGNIIHAPATVVSCSCCLI SKAGALLKGNKLAIFLLFKEAVFESDSAVLISSVNDPFRPLHWEVDAVIQSIRWLRNL FFQVLSCLL" CDS join(2414289..2414439,2414537..2414611,2414729..2414826, 2414931..2415007,2415170..2415257,2415429..2415509, 2415607..2415663,2415835..2415919,2416121..2416170, 2416341..2416397,2416485..2416563,2416643..2416701, 2416998..2417055,2417154..2417251) /locus_tag="TCM_022058" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="TerC integral membrane domain-containing protein isoform 2" /protein_id="EOY07685.1" /db_xref="Phytozome:POPTR_0006s13620.1" /db_xref="TAIR:AT5G12130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JZG9" /translation="MGLASAVHHGGGIRIALNFDRRVAPISPPVQAPRWTKLRFAHPR LSTIQSVINIRRTQYFPVVRSRGMEQEDLSTEGERIASYSYADSEEKLQENETYASSV KTVALWVCAAVAFGVGLGLKEGVGPASEYFAGYILEQSLSVDNLFVFVLIFKYFKVPH MYQNRVLSYGIAGAVIFRLSLILLGTATLQRFEIVNLLLAAVLLFSSFKLFSDDDEDD SDLSNNFIVKTCRRFIPVTTNYDGNRFITKQDGNWIATPLLLTVAVIELSDIAFAVDS IPAVFGVTRDPFIVFSSNLFAILGLRSLYTLIAEGMADLEYLQPSIGVVLGFIGCKMI LDFFGFHISTEASLGFVAASLGAGVLLSLAKKADLL" CDS join(2414289..2414439,2414537..2414611,2414729..2414826, 2414931..2415007,2415170..2415257,2415429..2415509, 2415607..2415663,2415835..2415919,2416121..2416170, 2416341..2416397,2416485..2416563,2416643..2416701, 2416998..2417055,2417154..2417251) /locus_tag="TCM_022058" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="TerC integral membrane domain-containing protein isoform 2" /protein_id="EOY07686.1" /db_xref="Phytozome:POPTR_0006s13620.1" /db_xref="TAIR:AT5G12130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JZG9" /translation="MGLASAVHHGGGIRIALNFDRRVAPISPPVQAPRWTKLRFAHPR LSTIQSVINIRRTQYFPVVRSRGMEQEDLSTEGERIASYSYADSEEKLQENETYASSV KTVALWVCAAVAFGVGLGLKEGVGPASEYFAGYILEQSLSVDNLFVFVLIFKYFKVPH MYQNRVLSYGIAGAVIFRLSLILLGTATLQRFEIVNLLLAAVLLFSSFKLFSDDDEDD SDLSNNFIVKTCRRFIPVTTNYDGNRFITKQDGNWIATPLLLTVAVIELSDIAFAVDS IPAVFGVTRDPFIVFSSNLFAILGLRSLYTLIAEGMADLEYLQPSIGVVLGFIGCKMI LDFFGFHISTEASLGFVAASLGAGVLLSLAKKADLL" CDS join(2414289..2414439,2414537..2414611,2414729..2414826, 2414931..2415007,2415170..2415257,2415429..2415509, 2415607..2415663,2415835..2415919,2416121..2416170, 2416341..2416397,2416485..2416563,2416643..2416701, 2416998..2417099) /locus_tag="TCM_022058" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="TerC integral membrane domain-containing protein isoform 4" /protein_id="EOY07687.1" /db_xref="Phytozome:POPTR_0006s13620.1" /db_xref="TAIR:AT5G12130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JZG9" /translation="MGLASAVHHGGGIRIALNFDRRVAPISPPVQAPRWTKLRFAHPR LSTIQSVINIRRTQYFPVVRSRGMEQEDLSTEGERIASYSYADSEEKLQENETYASSV KTVALWVCAAVAFGVGLGLKEGVGPASEYFAGYILEQSLSVDNLFVFVLIFKYFKVPH MYQNRVLSYGIAGAVIFRLSLILLGTATLQRFEIVNLLLAAVLLFSSFKLFSDDDEDD SDLSNNFIVKTCRRFIPVTTNYDGNRFITKQDGNWIATPLLLTVAVIELSDIAFAVDS IPAVFGVTRDPFIVFSSNLFAILGLRSLYTLIAEGMADLEYLQPSIGVVLGFIGCKMI LDFFGLYLGSVSINIKSL" gene complement(2418139..2421448) /locus_tag="TCM_022059" /note="dbxref CacaoGD:Thecc1EG022059" mRNA complement(join(2418139..2418206,2419688..2420224, 2420432..2421448)) /locus_tag="TCM_022059" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29686.m000865.2" /inference="similar to AA sequence:ricco:29686.m000865" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.18 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc7159t1" CDS complement(join(2419814..2420224,2420432..2420983)) /locus_tag="TCM_022059" /note="dbxref ricco:29686.m000865" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07688.1" /translation="MNCWIIILINQLSDLGLDHWKQTKSFSQSKTITKTCSQSRMAFD QVMSTTMKFPMGYRFVPTEEELVLGYLLKKVKGETLPSQAVIDCEIYGDDKEPWKIFN QTSTDKFYVFTKLKKKNGRGRRIDRTAGCGTWKAQNTYLVMDSKNNHVGFNKLFVFEV KGSDSNNAINGHWLMHEFSLLNDKFFRYSRFCILSFLETYSILVILIPCYPALVKGSK KLRIVCMLDYASLFLLQSDFVLCEIRNKNATGVIQTEKEDCEKGSIVEELESCEDGIL TVEELEDMMIGAEESFQSEKEDCSKGSTVIKLASCEVWMDTRGT" gene 2425358..2428263 /locus_tag="TCM_022060" /note="dbxref CacaoGD:Thecc1EG022060" mRNA join(2425358..2425544,2425644..2425715,2425853..2425913, 2426046..2426132,2426530..2426628,2426718..2426820, 2426908..2426981,2427212..2427319,2427779..2427859, 2427944..2428263) /locus_tag="TCM_022060" /product="Glutathione S-transferase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s13580.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043031t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s08430.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:PASA:2:TSA:puevd3b021356t1a2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13327t1" mRNA join(2425487..2425544,2425644..2425715,2425853..2425913, 2426046..2426132,2426530..2426628,2426718..2426820, 2426908..2426981,2427212..2427319,2427779..2427859, 2427960..2428198) /locus_tag="TCM_022060" /product="Glutathione S-transferase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s13580.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043031t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s08430.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13327t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13327t1" CDS join(2425534..2425544,2425644..2425715,2425853..2425913, 2426046..2426132,2426530..2426628,2426718..2426820, 2426908..2426981,2427212..2427319,2427779..2427859, 2427960..2427971) /locus_tag="TCM_022060" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG043031t1" /codon_start=1 /product="Glutathione S-transferase family protein isoform 1" /protein_id="EOY07689.1" /db_xref="Phytozome:POPTR_0016s08430.1" /db_xref="TAIR:AT5G02790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H8U5" /translation="MATDTVEVLPPPLDATAEQPPLFDGTTRLYTCYTCPFAQRVWIT RNYKGLQDKIKLVPLILQNRPAWYKEKVYPENKVPALEHNGKIIGESLDLIKYVDSNF EGPSLLPDDPEKKKFFEELLSYLDTFVRTVFTSFKGDPAKEVGAVFDYLENALQKFDG PFFLGQISLADIAYIPFVERFQIFLLEAFQYDIIAGRPKLAAWIEEMNNIDAYKQTKT DPKELVAFYKQRFMGQK" CDS join(2425534..2425544,2425644..2425715,2425853..2425913, 2426046..2426132,2426530..2426628,2426718..2426820, 2426908..2426981,2427212..2427319,2427779..2427859, 2427944..2427946) /locus_tag="TCM_022060" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG043031t1" /codon_start=1 /product="Glutathione S-transferase family protein isoform 2" /protein_id="EOY07690.1" /db_xref="Phytozome:POPTR_0016s08430.1" /db_xref="TAIR:AT5G02790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H8U5" /translation="MATDTVEVLPPPLDATAEQPPLFDGTTRLYTCYTCPFAQRVWIT RNYKGLQDKIKLVPLILQNRPAWYKEKVYPENKVPALEHNGKIIGESLDLIKYVDSNF EGPSLLPDDPEKKKFFEELLSYLDTFVRTVFTSFKGDPAKEVGAVFDYLENALQKFDG PFFLGQISLADIAYIPFVERFQIFLLEAFQYDIIAGRPKLAAWIEEMNNIDAYKQTKT DPKELVAFYKQRFM" gene 2428355..2437741 /locus_tag="TCM_022061" /note="dbxref CacaoGD:Thecc1EG022061" mRNA join(2428355..2428966,2429670..2429739,2429867..2430772, 2430857..2430997,2431120..2431233,2431973..2432031, 2432347..2432413,2432603..2432654,2432752..2432844, 2432974..2433057,2433149..2433561,2434239..2434300, 2434610..2434679,2434822..2434902,2435009..2435110, 2435758..2435882,2437044..2437134,2437400..2437499) /locus_tag="TCM_022061" /product="Ypt/Rab-GAP domain of gyp1p superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29805.m001506" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043034t4" /inference="similar to AA sequence:ricco:29805.m001506" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1163t19" CDS join(2428920..2428966,2429670..2429739,2429867..2430772, 2430857..2430997,2431120..2431233,2431973..2432031, 2432347..2432413,2432603..2432654,2432752..2432844, 2432974..2433057,2433149..2433561,2434239..2434300, 2434610..2434679,2434822..2434902,2435009..2435110, 2435758..2435882,2437044..2437134,2437400..2437453) /locus_tag="TCM_022061" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29805.m001506; paralog of Thecc1EG043034t4" /codon_start=1 /product="Ypt/Rab-GAP domain of gyp1p superfamily protein isoform 1" /protein_id="EOY07691.1" /db_xref="TAIR:AT2G37290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SGT3" /translation="MTESNLNLLEALEPKRDAYGFAVRPQHIQTYRQYVNIYKEEEEE RSEKWKIFLEQHAKPTEPCFSEVEDRKTLQAEATEMKEKPLPEENKESLHVEASEGNE EAAIEAKEETTSEKEHKVIFQSEATQLNVEAASEEGCRKTCQGEAIKVKEEVDSVDES KETSQTEATELEEGVASKRIKEGDAPSTKLDSAGSTEKPDSASLQESKTEKPDSAHST ESEREKEVQLAEETKTRKVERWAKTRPVLCAIENMMNSRAKKGKNMKNMNMNESGDHL PSIKEARSPEPESEDEFEEKVCVNVRSSREENDAGNEASQESFFPWKEELESLVHGGV PKDLRGEVWQAFVGVKARRVERYYEDLLAQETYEDDQQSNSSGVFRKWKRQIEKDLPR TFPGHPALNDNGRDSLRRLLLAYARHNPSVGYCQAMNFFAGLLLLLMPEENAFWTLVG IIDNYFDGYYTEEMIESQVDQLVFEELMRERFPKLVNHLDYLGVQVAWISGPWFLSIF VNMLPWESVLRIWDVLLFEGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQSLAG STFDSSQLVLTACMGFLAVTDARLQDLRDKHRPAVLAIVEERTKRGRVWKDSKGLASK LYSFKHDRGSLLEETKPAQEVADGDISNLETRSSNLDELLCSLNADSEVDSLPDLQEQ VDWMKVELCRLLEEKRAAILRAEELETALVEMVKEDNRRQLSAKIEQLEQEVADLQQA LADKKEQEAAMLKVLMRLEQEQRITEDARRNTEQDADAQRYAVTVLQEKYEKAMASIA QMEKRVVMAESMLEATLQYQSGQAKALSSPRAQRNQASTQDSPRRKAGILSFGLGWRD KNKGKPNFEESTDGKSWEET" mRNA join(<2429994..2430772,2430857..2430997,2431120..2431233, 2431973..2432031,2432347..2432413,2432603..2432654, 2432752..2432844,2432974..2433057,2433149..2433561, 2434239..2434300,2434610..2434679,2434822..2434902, 2435009..2435110,2435758..2435894,2437044..2437134, 2437400..2437741) /locus_tag="TCM_022061" /product="Run and tbc1 domain containing 3, plant, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:29805.m001506" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043034t2" /inference="similar to AA sequence:Phytozome:POPTR_0006s13570.2" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1163t10; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1163t19; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1202t14" mRNA join(<2429994..2430772,2430857..2430997,2431120..2431233, 2431973..2432031,2432347..2432413,2432603..2432654, 2432752..2432844,2432974..2433057,2433149..2433561, 2434239..2434300,2434610..2434679,2434822..2434902, 2435009..2435110,2435758..2435882,2436138..2436208, 2437115..2437423) /locus_tag="TCM_022061" /product="Run and tbc1 domain containing 3, plant, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:29805.m001506" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043034t3" /inference="similar to AA sequence:Phytozome:POPTR_0006s13570.2" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1163t15; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1163t19; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1202t14" CDS join(<2429996..2430772,2430857..2430997,2431120..2431233, 2431973..2432031,2432347..2432413,2432603..2432654, 2432752..2432844,2432974..2433057,2433149..2433561, 2434239..2434300,2434610..2434679,2434822..2434902, 2435009..2435110,2435758..2435882,2436138..2436165) /locus_tag="TCM_022061" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG043034t3" /codon_start=1 /product="Run and tbc1 domain containing 3, plant, putative isoform 3" /protein_id="EOY07693.1" /db_xref="Phytozome:POPTR_0006s13570.2" /db_xref="TAIR:AT2G37290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SGT3" /translation="KPLPEENKESLHVEASEGNEEAAIEAKEETTSEKEHKVIFQSEA TQLNVEAASEEGCRKTCQGEAIKVKEEVDSVDESKETSQTEATELEEGVASKRIKEGD APSTKLDSAGSTEKPDSASLQESKTEKPDSAHSTESEREKEVQLAEETKTRKVERWAK TRPVLCAIENMMNSRAKKGKNMKNMNMNESGDHLPSIKEARSPEPESEDEFEEKVCVN VRSSREENDAGNEASQESFFPWKEELESLVHGGVPKDLRGEVWQAFVGVKARRVERYY EDLLAQETYEDDQQSNSSGVFRKWKRQIEKDLPRTFPGHPALNDNGRDSLRRLLLAYA RHNPSVGYCQAMNFFAGLLLLLMPEENAFWTLVGIIDNYFDGYYTEEMIESQVDQLVF EELMRERFPKLVNHLDYLGVQVAWISGPWFLSIFVNMLPWESVLRIWDVLLFEGNRVM LFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTFDSSQLVLTACMGFLAVTDARL QDLRDKHRPAVLAIVEERTKRGRVWKDSKGLASKLYSFKHDRGSLLEETKPAQEVADG DISNLETRSSNLDELLCSLNADSEVDSLPDLQEQVDWMKVELCRLLEEKRAAILRAEE LETALVEMVKEDNRRQLSAKIEQLEQEVADLQQALADKKEQEAAMLKVLMRLEQEQRI TEDARRNTEQDADAQRYAVTVLQEKYEKAMASIAQMEKRVVMAESMLEATLQYQSGQA KALSSPRIHAVISVL" CDS join(<2429996..2430772,2430857..2430997,2431120..2431233, 2431973..2432031,2432347..2432413,2432603..2432654, 2432752..2432844,2432974..2433057,2433149..2433561, 2434239..2434300,2434610..2434679,2434822..2434902, 2435009..2435110,2435758..2435886) /locus_tag="TCM_022061" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG043034t2" /codon_start=1 /product="Run and tbc1 domain containing 3, plant, putative isoform 2" /protein_id="EOY07692.1" /db_xref="Phytozome:POPTR_0006s13570.2" /db_xref="TAIR:AT2G37290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SGT3" /translation="KPLPEENKESLHVEASEGNEEAAIEAKEETTSEKEHKVIFQSEA TQLNVEAASEEGCRKTCQGEAIKVKEEVDSVDESKETSQTEATELEEGVASKRIKEGD APSTKLDSAGSTEKPDSASLQESKTEKPDSAHSTESEREKEVQLAEETKTRKVERWAK TRPVLCAIENMMNSRAKKGKNMKNMNMNESGDHLPSIKEARSPEPESEDEFEEKVCVN VRSSREENDAGNEASQESFFPWKEELESLVHGGVPKDLRGEVWQAFVGVKARRVERYY EDLLAQETYEDDQQSNSSGVFRKWKRQIEKDLPRTFPGHPALNDNGRDSLRRLLLAYA RHNPSVGYCQAMNFFAGLLLLLMPEENAFWTLVGIIDNYFDGYYTEEMIESQVDQLVF EELMRERFPKLVNHLDYLGVQVAWISGPWFLSIFVNMLPWESVLRIWDVLLFEGNRVM LFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTFDSSQLVLTACMGFLAVTDARL QDLRDKHRPAVLAIVEERTKRGRVWKDSKGLASKLYSFKHDRGSLLEETKPAQEVADG DISNLETRSSNLDELLCSLNADSEVDSLPDLQEQVDWMKVELCRLLEEKRAAILRAEE LETALVEMVKEDNRRQLSAKIEQLEQEVADLQQALADKKEQEAAMLKVLMRLEQEQRI TEDARRNTEQDADAQRYAVTVLQEKYEKAMASIAQMEKRVVMAESMLEATLQYQSGQA KALSSPR" gene <2435853..2437071 /locus_tag="TCM_022062" /note="dbxref CacaoGD:Thecc1EG022062" mRNA join(<2435853..2435882,2436170..2436288,2437044..2437071) /locus_tag="TCM_022062" /product="Uncharacterized protein isoform 2" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is none, intron is strong, protein is partial5; similar to RNA sequence, EST 0.52 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1209t7; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1163t13" CDS join(<2435854..2435882,2436170..2436287) /locus_tag="TCM_022062" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY07694.1" /translation="GQAKALSSPRPMVSRPTNDRRIGSGVEPHLYGSTRALLNIEEFR SYHN" gene complement(2437537..2441030) /locus_tag="TCM_022063" /note="dbxref CacaoGD:Thecc1EG022063" mRNA complement(join(2437537..2437572,2438094..2438484, 2438689..2439080,2439188..2439377,2439489..2439661, 2440635..2441030)) /locus_tag="TCM_022063" /product="Kinase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025564001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043036t1" /inference="similar to AA sequence:Phytozome:GSVIVT01025564001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc532t2" CDS complement(join(2438161..2438484,2438689..2439080, 2439188..2439377,2439489..2439661,2440635..2440740)) /locus_tag="TCM_022063" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG043036t1" /codon_start=1 /product="Kinase superfamily protein isoform 1" /protein_id="EOY07695.1" /db_xref="Phytozome:GSVIVT01025564001" /db_xref="TAIR:AT5G02800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1PDV6" /translation="MGWLPCSGKSNTKANKSKKNKKMEQMPLDQIKPSSDSSSSGETS RSGGGEHIAAQIFTFRELATATKNFRAECLLGEGGFGRVYKGRLESTNQVVAIKQLDR NGLQGNREFLVEVLMLSLLHHPNLVNLTGYCADGDQRLLVYEYMPLGSLEDHLHDISP GKKRLDWNTRMKIAAGAAKGLEYLHDKASPPVIYRDLKCSNILLGEGCFPKLSDFGLA KLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNS KAAGEQNLVAWARPLFKDRKKFSQMADPMLQGQYPPRGLFQALAVAAMCVQEQPNMRP LIADVVTALTYLASQKFEPDTQSVQGSRLAPGTPPRTKRDRDKKPNGGSGSERDRTRR LS" mRNA complement(join(2438456..2438523,2438689..2439080, 2439188..2439377,2439489..2439661,2440635..2440689)) /locus_tag="TCM_022063" /product="Kinase superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025564001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043036t1" /inference="similar to AA sequence:ricco:29758.m000645" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc540t1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc532t2" CDS complement(join(2438497..2438523,2438689..2439080, 2439188..2439377,2439489..2439661,2440635..2440674)) /locus_tag="TCM_022063" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29758.m000645; paralog of Thecc1EG043036t1" /codon_start=1 /product="Kinase superfamily protein isoform 2" /protein_id="EOY07696.1" /db_xref="TAIR:AT5G18610.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1PDV6" /translation="MEQMPLDQIKPSSDSSSSGETSRSGGGEHIAAQIFTFRELATAT KNFRAECLLGEGGFGRVYKGRLESTNQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHP NLVNLTGYCADGDQRLLVYEYMPLGSLEDHLHDISPGKKRLDWNTRMKIAAGAAKGLE YLHDKASPPVIYRDLKCSNILLGEGCFPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYC APEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKAAGEQNLVAWVAKVSLLS" mobile_element complement(2441381..2441627) /note="source:CACAO_MITE63_scaffold_4 260 502" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(2442693..2442775) /note="source:INTACT433_F212_scaffold_1-int 3050 3136" /mobile_element_type="retrotransposon:LTR/Copia" gene 2442835..2443808 /locus_tag="TCM_022064" /note="dbxref CacaoGD:Thecc1EG022064" mRNA 2442835..2443808 /locus_tag="TCM_022064" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000935t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.76 coverage" CDS 2442986..2443393 /locus_tag="TCM_022064" /note="paralog of Thecc1EG000935t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07697.1" /translation="MGYIPTSICLIAALSKTNKASKHRKQPLGIPPSLPPPTPHPPPP PGSLKLNTDGAAKGKPGPAGIGGVLRDHLGFIKVAFSNHIGIEESNYAAFQAIQEGIR FFSHHEPHPMSWKWKVVLPMPSAGLKTTTRSGA" mobile_element complement(2444291..2446242) /note="source:CACAO_M_E34871_F106_scaffold_5 1 2015" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(2446310..2451444) /locus_tag="TCM_022065" /note="dbxref CacaoGD:Thecc1EG022065" mRNA complement(join(2446310..2446560,2446890..2447092, 2447419..2447577,2447714..2448441,2448641..2448772, 2448854..2449313,2451215..2451295,2451415..2451444)) /locus_tag="TCM_022065" /product="WRKY family transcription factor family protein" /inference="alignment:exonerate- protein:2:ricco:29805.m001504" /inference="similar to AA sequence:ricco:29805.m001504" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1761t1" CDS complement(join(2446906..2447092,2447419..2447577, 2447714..2448441,2448641..2448772,2448854..2449072)) /locus_tag="TCM_022065" /note="dbxref ricco:29805.m001504" /codon_start=1 /product="WRKY family transcription factor family protein" /protein_id="EOY07698.1" /db_xref="TAIR:AT2G37260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MT69" /translation="MEVKEAERIVIAKPVASKPTCSSFKSFSELLAGAINASPPNACS ETAVPAIRPKTVRFKPAVNQAPSAAASSQAELPGIGVSSSSDKVLKSNVKPTVVYKPQ AKLVSKTTVSLLANMGNFSISNQQTLQSTEAPSQHTNQEKKNFRSQVCPNFHQNAPSH AETDQTSEPSKVGSQNMEEDPKSLPAAANIDRPSYDGYNWRKYGQKQVKGSEYPRSYY KCTHPNCPVKKKVERSFDGQIAEIVYKGEHNHSKPQPPKRNSSGTQGLGFTSDGTGQD TNNSLWSNNPNERNEGSEGRVENQNEVGLSAPSSYQGKAVLSYEHVTTGAVNAGVTSE NSIGLSGECEERSKEGEDDEPRSKRRKSENQSSEVGTSGEGIQEPRVVVQSCTDSEIM GDGFRWRKYGQKVVKGNPYPRSYYRCTSLKCNVRKHVERASDDPRAFITTYEGKHNHE MPLRNTNPVASDPDSNSPASKDKR" mobile_element 2454779..2454875 /note="source:scaffold_9_CACTA_0936 329 427" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2456376..2456765 /note="source:scaffold_8_CACTA_0855 3097 3516" /mobile_element_type="transposon:TIR/CACTA" gene complement(2456718..2463494) /locus_tag="TCM_022066" /note="dbxref CacaoGD:Thecc1EG022066" mRNA complement(join(2456718..2456968,2457067..2457153, 2457249..2457483,2457838..2458645,2458759..2459209, 2459365..2459548,2460454..2460615,2460951..2461084, 2461208..2461369,2461937..2462288,2462487..2462552, 2463012..2463494)) /locus_tag="TCM_022066" /product="Sensory transduction histidine kinase, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene18151" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043038t6" /inference="similar to AA sequence:ricco:29805.m001503" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00948t00004" mRNA complement(join(2456718..2457483,2457838..2458645, 2458759..2459209,2459365..2459548,2460454..2460615, 2460951..2461084,2461208..2461369,2461937..2462552, 2463012..2463494)) /locus_tag="TCM_022066" /product="Sensory transduction histidine kinase, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene18151" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043038t6" /inference="similar to AA sequence:ricco:29805.m001503" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:PASA:2:TSA:puevd3b021361t1a2; alternateUTRof:Thecc1EG022066t1; inference alignment:Newbler:10:TSA:cgbaL_g00948t00004" mRNA complement(join(2456718..2457483,2457838..2458645, 2458759..2459209,2459365..2459548,2460454..2460615, 2460951..2461369,2461937..2462552,2463012..2463494)) /locus_tag="TCM_022066" /product="Sensory transduction histidine kinase, putative isoform 4" /inference="alignment:exonerate-protein:2:frave:gene18151" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043038t6" /inference="similar to AA sequence:ricco:29805.m001503" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:PASA:2:TSA:puevd3b021361t1a3; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc771t13" mRNA complement(join(2456751..2457483,2457838..2458645, 2458759..2459209,2459365..2459548,2460454..2460615, 2460951..2461084,2461208..2461369,2461937..2462288, 2462487..2462552,2463012..2463205)) /locus_tag="TCM_022066" /product="Sensory transduction histidine kinase, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene18151" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043038t6" /inference="similar to AA sequence:ricco:29805.m001503" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1774t2; alternateUTRof:Thecc1EG022066t1; inference alignment:Newbler:10:TSA:cgbaL_g00948t00004; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc771t13" mRNA complement(join(2457066..2457483,2457838..2458645, 2458759..2459209,2459365..2459548,2460454..2460615, 2460951..2461084)) /locus_tag="TCM_022066" /product="Pseudo-response regulator 7, putative isoform 4" /inference="alignment:exonerate-protein:2:frave:gene18151" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043038t6" /inference="similar to AA sequence:ricco:29805.m001503" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc771t13; alternateUTRof:Thecc1EG022066t4; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc771t13; inference alignment:Newbler:10:TSA:cgbaL_g00948t00004" mRNA complement(join(2457066..2458645,2458759..2459209, 2459365..2459548,2460454..2460615,2460951..2461084)) /locus_tag="TCM_022066" /product="Sensory transduction histidine kinase, putative isoform 6" /inference="alignment:exonerate-protein:2:frave:gene18151" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043038t9" /inference="similar to AA sequence:ricco:29805.m001503" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc771t8; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc771t13; inference alignment:Newbler:10:TSA:cgbaL_g00948t00004" mRNA complement(join(2457124..2457153,2457249..2458645, 2458759..2459209,2459365..2459548,2460454..>2460615)) /locus_tag="TCM_022066" /product="Pseudo-response regulator 7, putative isoform 7" /inference="alignment:exonerate-protein:2:frave:gene18151" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043038t9" /inference="similar to AA sequence:ricco:29805.m001503" /note="transcript variant 7; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc763t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc771t13; inference alignment:Newbler:10:TSA:cgbaL_g00948t00004" CDS complement(join(2457373..2457483,2457838..2458645, 2458759..2459209,2459365..2459548,2460454..2460615, 2460951..2461084,2461208..2461369,2461937..2462276)) /locus_tag="TCM_022066" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29805.m001503; paralog of Thecc1EG043038t6" /codon_start=1 /product="Sensory transduction histidine kinase, putative isoform 1" /protein_id="EOY07699.1" /db_xref="TAIR:AT5G02810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SGT0" /translation="MKVDSDGDKGLRELNHQLCDGNKRSTNGVVTEEHVTLEGDELKV NEIAQNVNDGHVGAVQAPAVLQIPQQQPQNAMVCWERFLHLRSLKVLLVENDDSTRHV VTALLRNCSYEVIEAANGLQAWKILEDLTNHIDLVLTEVVMPCLSGVGLLSKIMSHKT QKNVPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGS ESGTQTQKSVKSKSAEKSDNNTGSNDGDDNGSIGLNFGDGSDDGSATQSSWTKQAVEV DSPRPVSPWDRVAECRDSTCAQVIHSNADLSGNKWVPVTAAKECKEQDEQLDNVAMGK DLDIGVPRNVDLQLEHPVEVPIKAIGTKQINLLEMGFSKFNEQIDNRKLDLNSETPSS KVKSEAPNQTGIISETTDLQKESADYEASNRLSKISDSNDKNINDSKELPSVDLGLKR LRGVKDAGTAFRDERNVLRRSDSSAFSRYNTASNANKVPTVNIGSSSALDNNIEETRK GSACDVRFHLLNEPPNQCSNVGSNNIDMGSTANNAFAKPAVLKNKSAASSIVRSSHPS STFQPMKNDLSASQKVVLDKADDVNTTAGLAQPRGTHQELQMQRFPHHYDHHHHLARG IQQQQQPPEHNDLSLKKMAADAPHCGSSNVLGGPVEGNAGNYSVNGSASGSNHGSNGP NGSSTAVNTVWTNIESDNGIAGKSGSGDASGSGSGSGVDQSKSAHREAALTKFRQKRK ERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTGNNDDPAPEGNS" CDS complement(join(2457373..2457483,2457838..2458645, 2458759..2459209,2459365..2459548,2460454..2460615, 2460951..2461084,2461208..2461369,2461937..2462276)) /locus_tag="TCM_022066" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29805.m001503; paralog of Thecc1EG043038t6" /codon_start=1 /product="Sensory transduction histidine kinase, putative isoform 1" /protein_id="EOY07700.1" /db_xref="TAIR:AT5G02810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SGT0" /translation="MKVDSDGDKGLRELNHQLCDGNKRSTNGVVTEEHVTLEGDELKV NEIAQNVNDGHVGAVQAPAVLQIPQQQPQNAMVCWERFLHLRSLKVLLVENDDSTRHV VTALLRNCSYEVIEAANGLQAWKILEDLTNHIDLVLTEVVMPCLSGVGLLSKIMSHKT QKNVPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGS ESGTQTQKSVKSKSAEKSDNNTGSNDGDDNGSIGLNFGDGSDDGSATQSSWTKQAVEV DSPRPVSPWDRVAECRDSTCAQVIHSNADLSGNKWVPVTAAKECKEQDEQLDNVAMGK DLDIGVPRNVDLQLEHPVEVPIKAIGTKQINLLEMGFSKFNEQIDNRKLDLNSETPSS KVKSEAPNQTGIISETTDLQKESADYEASNRLSKISDSNDKNINDSKELPSVDLGLKR LRGVKDAGTAFRDERNVLRRSDSSAFSRYNTASNANKVPTVNIGSSSALDNNIEETRK GSACDVRFHLLNEPPNQCSNVGSNNIDMGSTANNAFAKPAVLKNKSAASSIVRSSHPS STFQPMKNDLSASQKVVLDKADDVNTTAGLAQPRGTHQELQMQRFPHHYDHHHHLARG IQQQQQPPEHNDLSLKKMAADAPHCGSSNVLGGPVEGNAGNYSVNGSASGSNHGSNGP NGSSTAVNTVWTNIESDNGIAGKSGSGDASGSGSGSGVDQSKSAHREAALTKFRQKRK ERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTGNNDDPAPEGNS" CDS complement(join(2457373..2457483,2457838..2458645, 2458759..2459209,2459365..2459548,2460454..2460615, 2460951..2461084,2461208..2461369,2461937..2462276)) /locus_tag="TCM_022066" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29805.m001503; paralog of Thecc1EG043038t6" /codon_start=1 /product="Sensory transduction histidine kinase, putative isoform 1" /protein_id="EOY07701.1" /db_xref="TAIR:AT5G02810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SGT0" /translation="MKVDSDGDKGLRELNHQLCDGNKRSTNGVVTEEHVTLEGDELKV NEIAQNVNDGHVGAVQAPAVLQIPQQQPQNAMVCWERFLHLRSLKVLLVENDDSTRHV VTALLRNCSYEVIEAANGLQAWKILEDLTNHIDLVLTEVVMPCLSGVGLLSKIMSHKT QKNVPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGS ESGTQTQKSVKSKSAEKSDNNTGSNDGDDNGSIGLNFGDGSDDGSATQSSWTKQAVEV DSPRPVSPWDRVAECRDSTCAQVIHSNADLSGNKWVPVTAAKECKEQDEQLDNVAMGK DLDIGVPRNVDLQLEHPVEVPIKAIGTKQINLLEMGFSKFNEQIDNRKLDLNSETPSS KVKSEAPNQTGIISETTDLQKESADYEASNRLSKISDSNDKNINDSKELPSVDLGLKR LRGVKDAGTAFRDERNVLRRSDSSAFSRYNTASNANKVPTVNIGSSSALDNNIEETRK GSACDVRFHLLNEPPNQCSNVGSNNIDMGSTANNAFAKPAVLKNKSAASSIVRSSHPS STFQPMKNDLSASQKVVLDKADDVNTTAGLAQPRGTHQELQMQRFPHHYDHHHHLARG IQQQQQPPEHNDLSLKKMAADAPHCGSSNVLGGPVEGNAGNYSVNGSASGSNHGSNGP NGSSTAVNTVWTNIESDNGIAGKSGSGDASGSGSGSGVDQSKSAHREAALTKFRQKRK ERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTGNNDDPAPEGNS" CDS complement(join(2457373..2457483,2457838..2458645, 2458759..2459209,2459365..2459548,2460454..2460615, 2460951..2461082)) /locus_tag="TCM_022066" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29805.m001503; paralog of Thecc1EG043038t6" /codon_start=1 /product="Sensory transduction histidine kinase, putative isoform 4" /protein_id="EOY07702.1" /db_xref="TAIR:AT5G02810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SGT0" /translation="MSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS SSGSGSESGTQTQKSVKSKSAEKSDNNTGSNDGDDNGSIGLNFGDGSDDGSATQSSWT KQAVEVDSPRPVSPWDRVAECRDSTCAQVIHSNADLSGNKWVPVTAAKECKEQDEQLD NVAMGKDLDIGVPRNVDLQLEHPVEVPIKAIGTKQINLLEMGFSKFNEQIDNRKLDLN SETPSSKVKSEAPNQTGIISETTDLQKESADYEASNRLSKISDSNDKNINDSKELPSV DLGLKRLRGVKDAGTAFRDERNVLRRSDSSAFSRYNTASNANKVPTVNIGSSSALDNN IEETRKGSACDVRFHLLNEPPNQCSNVGSNNIDMGSTANNAFAKPAVLKNKSAASSIV RSSHPSSTFQPMKNDLSASQKVVLDKADDVNTTAGLAQPRGTHQELQMQRFPHHYDHH HHLARGIQQQQQPPEHNDLSLKKMAADAPHCGSSNVLGGPVEGNAGNYSVNGSASGSN HGSNGPNGSSTAVNTVWTNIESDNGIAGKSGSGDASGSGSGSGVDQSKSAHREAALTK FRQKRKERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTGNNDDPAPEGNS" CDS complement(join(2457373..2457483,2457838..2458645, 2458759..2459209,2459365..2459548,2460454..2460615, 2460951..2461082)) /locus_tag="TCM_022066" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:29805.m001503; paralog of Thecc1EG043038t6" /codon_start=1 /product="Pseudo-response regulator 7, putative isoform 4" /protein_id="EOY07703.1" /db_xref="TAIR:AT5G02810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SGT0" /translation="MSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS SSGSGSESGTQTQKSVKSKSAEKSDNNTGSNDGDDNGSIGLNFGDGSDDGSATQSSWT KQAVEVDSPRPVSPWDRVAECRDSTCAQVIHSNADLSGNKWVPVTAAKECKEQDEQLD NVAMGKDLDIGVPRNVDLQLEHPVEVPIKAIGTKQINLLEMGFSKFNEQIDNRKLDLN SETPSSKVKSEAPNQTGIISETTDLQKESADYEASNRLSKISDSNDKNINDSKELPSV DLGLKRLRGVKDAGTAFRDERNVLRRSDSSAFSRYNTASNANKVPTVNIGSSSALDNN IEETRKGSACDVRFHLLNEPPNQCSNVGSNNIDMGSTANNAFAKPAVLKNKSAASSIV RSSHPSSTFQPMKNDLSASQKVVLDKADDVNTTAGLAQPRGTHQELQMQRFPHHYDHH HHLARGIQQQQQPPEHNDLSLKKMAADAPHCGSSNVLGGPVEGNAGNYSVNGSASGSN HGSNGPNGSSTAVNTVWTNIESDNGIAGKSGSGDASGSGSGSGVDQSKSAHREAALTK FRQKRKERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTGNNDDPAPEGNS" CDS complement(join(2457754..2458645,2458759..2459209, 2459365..2459548,2460454..2460615,2460951..2461082)) /locus_tag="TCM_022066" /note="encoded by transcript variant 6; alternatively spliced; dbxref ricco:29805.m001503; paralog of Thecc1EG043038t9" /codon_start=1 /product="Sensory transduction histidine kinase, putative isoform 6" /protein_id="EOY07704.1" /db_xref="TAIR:AT5G02810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SGT0" /translation="MSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS SSGSGSESGTQTQKSVKSKSAEKSDNNTGSNDGDDNGSIGLNFGDGSDDGSATQSSWT KQAVEVDSPRPVSPWDRVAECRDSTCAQVIHSNADLSGNKWVPVTAAKECKEQDEQLD NVAMGKDLDIGVPRNVDLQLEHPVEVPIKAIGTKQINLLEMGFSKFNEQIDNRKLDLN SETPSSKVKSEAPNQTGIISETTDLQKESADYEASNRLSKISDSNDKNINDSKELPSV DLGLKRLRGVKDAGTAFRDERNVLRRSDSSAFSRYNTASNANKVPTVNIGSSSALDNN IEETRKGSACDVRFHLLNEPPNQCSNVGSNNIDMGSTANNAFAKPAVLKNKSAASSIV RSSHPSSTFQPMKNDLSASQKVVLDKADDVNTTAGLAQPRGTHQELQMQRFPHHYDHH HHLARGIQQQQQPPEHNDLSLKKMAADAPHCGSSNVLGGPVEGNAGNYSVNGSASGSN HGSNGPNGSSTAVNTVWTNIESDNGIAGKSGSGDASGSGSGSGVDQSKSAHREAALTK FRQKRKERCFRKKVTNIKLFNICKIVNRLKPSSHQHRFCH" CDS complement(join(2457754..2458645,2458759..2459209, 2459365..2459548,2460454..>2460615)) /locus_tag="TCM_022066" /note="encoded by transcript variant 7; alternatively spliced; dbxref ricco:29805.m001503; paralog of Thecc1EG043038t9" /codon_start=1 /product="Pseudo-response regulator 7, putative isoform 7" /protein_id="EOY07705.1" /db_xref="TAIR:AT5G02810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SGT0" /translation="SSGSGSESGTQTQKSVKSKSAEKSDNNTGSNDGDDNGSIGLNFG DGSDDGSATQSSWTKQAVEVDSPRPVSPWDRVAECRDSTCAQVIHSNADLSGNKWVPV TAAKECKEQDEQLDNVAMGKDLDIGVPRNVDLQLEHPVEVPIKAIGTKQINLLEMGFS KFNEQIDNRKLDLNSETPSSKVKSEAPNQTGIISETTDLQKESADYEASNRLSKISDS NDKNINDSKELPSVDLGLKRLRGVKDAGTAFRDERNVLRRSDSSAFSRYNTASNANKV PTVNIGSSSALDNNIEETRKGSACDVRFHLLNEPPNQCSNVGSNNIDMGSTANNAFAK PAVLKNKSAASSIVRSSHPSSTFQPMKNDLSASQKVVLDKADDVNTTAGLAQPRGTHQ ELQMQRFPHHYDHHHHLARGIQQQQQPPEHNDLSLKKMAADAPHCGSSNVLGGPVEGN AGNYSVNGSASGSNHGSNGPNGSSTAVNTVWTNIESDNGIAGKSGSGDASGSGSGSGV DQSKSAHREAALTKFRQKRKERCFRKKVTNIKLFNICKIVNRLKPSSHQHRFCH" gene 2466195..2467436 /locus_tag="TCM_022067" /note="dbxref CacaoGD:Thecc1EG022067" mRNA join(2466195..2466286,2466965..2467436) /locus_tag="TCM_022067" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.77 coverage" CDS join(2466226..2466286,2466965..2467185) /locus_tag="TCM_022067" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07706.1" /translation="MLEFSAWPAQLILYGLLILVDLSIVGSPLTAETPLHPIQKTKRI KPLNLNGKSETWEAPRGDYTSESIDLAWSLGFDDEVIIESGSLSFVNLI" mobile_element complement(2466277..2466947) /note="source:scaffold_1_CACTA_0008 6318 6969" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2467499..2468499 /note="source:CACAO_M_E49279_F74_scaffold_6 1004 1929" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(2469066..2470826) /locus_tag="TCM_022068" /note="dbxref CacaoGD:Thecc1EG022068" mRNA complement(join(2469066..2469364,2469737..2470009, 2470088..2470228,2470421..2470826)) /locus_tag="TCM_022068" /product="Adenosine kinase" /inference="alignment:exonerate- protein:2:TAIR:AT2G37250.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043040t1" /inference="similar to AA sequence:frave:gene18150" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03019t00001" CDS complement(join(2469221..2469364,2469737..2470009, 2470088..2470228,2470421..2470729)) /locus_tag="TCM_022068" /note="dbxref frave:gene18150; paralog of Thecc1EG043040t1" /codon_start=1 /product="Adenosine kinase" /protein_id="EOY07707.1" /db_xref="TAIR:AT2G37250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8HSW1" /translation="MAAITRFSKPLALSHIRRCLCSSSAAAAVSDESNPHVTSPFGNY KITRRDPSERNVQWVFLGSPGVGKGTYASRLSNLLGVPHIATGDLVREELASSGPLSK QLTEIVNQGKLVSDEIIISLLAERLEAGEAKGQSGFILDGFPRTINQAEILEGVTDID LVVNLRLPESVLIEKCLGRRICSQCGKNFNVASINVKGQNGNPGISMAPLLPPSHCMS KLVTRSDDTEKVVKERLRIYNEKSQPLEDYYLNKGKLMEFDLPGGIPESWPKLLEALN LDDFEERQSAAA" gene 2470982..2473594 /locus_tag="TCM_022069" /note="dbxref CacaoGD:Thecc1EG022069" mRNA join(2470982..2471235,2471340..2471479,2471578..2471623, 2471733..2471792,2472075..2472111,2472200..2472276, 2472469..2472560,2473039..2473099,2473265..2473351, 2473445..2473594) /locus_tag="TCM_022069" /product="Thioredoxin superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025554001" /inference="similar to AA sequence:Phytozome:GSVIVT01025554001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00132t00003_C2; inference alignment:Newbler:10:TSA:cgbaB_g11874t00001" mRNA join(2470982..2471235,2471340..2471479,2471578..2471623, 2471733..2471792,2472075..2472111,2472197..2472276, 2472469..2472560,2473039..2473099,2473265..2473485) /locus_tag="TCM_022069" /product="Thioredoxin superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025554001" /inference="similar to AA sequence:Phytozome:GSVIVT01025554001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaB_g11874t00001; inference alignment:Newbler:10:TSA:cgbaB_g11874t00001" CDS join(2471047..2471235,2471340..2471479,2471578..2471623, 2471733..2471792,2472075..2472111,2472197..2472276, 2472469..2472560,2473039..2473099,2473265..2473324) /locus_tag="TCM_022069" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Thioredoxin superfamily protein isoform 1" /protein_id="EOY07708.1" /db_xref="Phytozome:GSVIVT01025554001" /db_xref="TAIR:AT2G37240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZUU2" /translation="MAISLSTSLMPNTFQSNRNPKHLLTRVLLNQPSNFSLKHRENEN KISTRRSPLVASTISGSTGVPSSGVSLDTADSLDTVKVFDLNGNGIPISDLWKDRKAV VAFARHFGCVLCRKRADYLASKKDVMDKSGVALVLIGPGSIEQAKTFAAQTKFKGEVY ADPSHSSYEALIFVSGVTTTFTPKAGLKIIQLYMEGYRQDWKLSFEEDTVKRGGWQQG GILVAGPGKRNISYIHKDKEAGDDPDIEDILKACCS" CDS join(2471047..2471235,2471340..2471479,2471578..2471623, 2471733..2471792,2472075..2472111,2472200..2472276, 2472469..2472560,2473039..2473099,2473265..2473324) /locus_tag="TCM_022069" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Thioredoxin superfamily protein isoform 2" /protein_id="EOY07709.1" /db_xref="Phytozome:GSVIVT01025554001" /db_xref="TAIR:AT2G37240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZUU2" /translation="MAISLSTSLMPNTFQSNRNPKHLLTRVLLNQPSNFSLKHRENEN KISTRRSPLVASTISGSTGVPSSGVSLDTADSLDTVKVFDLNGNGIPISDLWKDRKAV VAFARHFGCVLCRKRADYLASKKDVMDKSGVALVLIGPGSIEQAKTFAAQTKFKGVYA DPSHSSYEALIFVSGVTTTFTPKAGLKIIQLYMEGYRQDWKLSFEEDTVKRGGWQQGG ILVAGPGKRNISYIHKDKEAGDDPDIEDILKACCS" gene 2472948..2475215 /locus_tag="TCM_022070" /note="dbxref CacaoGD:Thecc1EG022070" mRNA join(2472948..2473099,2473265..2475215) /locus_tag="TCM_022070" /product="Spo11/DNA topoisomerase VI, subunit A protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT5G02820.1" /inference="similar to AA sequence:Phytozome:GSVIVT01025540001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.31 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1806t5; alternateUTRof:Thecc1EG022070t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1806t2" mRNA 2473377..2475214 /locus_tag="TCM_022070" /product="Spo11/DNA topoisomerase VI, subunit A protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT5G02820.1" /inference="similar to AA sequence:Phytozome:GSVIVT01025540001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1806t2" CDS 2473749..2475005 /locus_tag="TCM_022070" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Spo11/DNA topoisomerase VI, subunit A protein isoform 1" /protein_id="EOY07710.1" /db_xref="Phytozome:GSVIVT01025540001" /db_xref="TAIR:AT5G02820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZ03" /translation="MADKKKRRRAYSDSEDASQPFKHLLKSDDQILQILKSFSSTSSS STSKPLTLADLSLSSTCREVSDLSLSSVQSAIESLVLQLTHQILSGQGFSFTVPSRSS SNQLYVPEVDRIVLKDKCTIRPFAHISSVRKTTITARILSLIHQLCLKNIHVTKRDLF YTDVKLFQDQLQSDAVLDDVSCMLGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTK MGMGGKAIPPNIDRVGDMQSDALFVLLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPD VATRLFLKKMKTELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLG IRPSDLDKYNIPEQCRLPMTEQDIKTGKDLLEEEFVKKNPGWVEELNLMVKTKQKAEI QALSSFGFQYLSEVYLPLKLQQQDWL" CDS 2473749..2475005 /locus_tag="TCM_022070" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Spo11/DNA topoisomerase VI, subunit A protein isoform 1" /protein_id="EOY07711.1" /db_xref="Phytozome:GSVIVT01025540001" /db_xref="TAIR:AT5G02820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZ03" /translation="MADKKKRRRAYSDSEDASQPFKHLLKSDDQILQILKSFSSTSSS STSKPLTLADLSLSSTCREVSDLSLSSVQSAIESLVLQLTHQILSGQGFSFTVPSRSS SNQLYVPEVDRIVLKDKCTIRPFAHISSVRKTTITARILSLIHQLCLKNIHVTKRDLF YTDVKLFQDQLQSDAVLDDVSCMLGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTK MGMGGKAIPPNIDRVGDMQSDALFVLLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPD VATRLFLKKMKTELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLG IRPSDLDKYNIPEQCRLPMTEQDIKTGKDLLEEEFVKKNPGWVEELNLMVKTKQKAEI QALSSFGFQYLSEVYLPLKLQQQDWL" gene complement(2475362..2482245) /locus_tag="TCM_022071" /note="dbxref CacaoGD:Thecc1EG022071" mRNA complement(join(2475362..2475953,2476125..2476185, 2476981..2477191,2477370..2477467,2477773..2477853, 2477987..2478052,2478715..2479281,2479391..2479555, 2479992..2480099,2480397..2480601,2480761..2480848, 2481397..2482245)) /locus_tag="TCM_022071" /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025541001" /inference="similar to AA sequence:Phytozome:GSVIVT01025541001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc470t5" CDS complement(join(2475610..2475953,2476125..2476185, 2476981..2477191,2477370..2477467,2477773..2477853, 2477987..2478052,2478715..2479281,2479391..2479555, 2479992..2480099,2480397..2480601,2480761..2480848, 2481397..2481979)) /locus_tag="TCM_022071" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative" /protein_id="EOY07712.1" /db_xref="Phytozome:GSVIVT01025541001" /db_xref="TAIR:AT5G02830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GYL7" /translation="MKDFVIILGGSSISTPPANLHHYHHHSSKPKKPNSSLGRLSPSR RQQNCSPSIPTVYSHQHPYPLLSSSSVRWDPTSRRSSLLKYYADLASKLAEDGRLEDF AMIVEMLVASGVNAPRIVSMLSVQFVSKGVASNVQEGKVKSVVEVLKKVEKLGIAPSK LVDGFGLVSMKREFQRIVGSGEVEQAVDLLEALRGFQFTIKELVDPSYIIKVCVDKRN PNLAVRYACLLPHAKILFCSIISEFGKKRDLASALTAYEASKKNLSGPNMYLYRAIID ACGLCGDYLKSRNIYEDLVNQRVTPNIYVFNSLMNVNAHDLGYTLDVYKDMQNLGITA DMASYNILLKACCLAQRVDLAQDIYNEVKHLESTGVLKLDVFTYCTIIKVFADARLWQ MALKIKEDMLSAGVTPNTVTWSSLISACANAGLVEQAFQLFEEMILTGCEPNSQCCNI LLHACVEASQYDRAFRLFHCWTGGQEGFAGNIDSVLGTKQLNNRTTSTALTNSHHLSF AKKFSFTPTTATYNILMKACCTDYYRAKALMDEMKSVGLSPNHVSWSILIDICRGSGN VEGAIQILKTMHVTGIKPDVVAYTTAIKVCVGSKNLKLAFSLFEEMKRYRVQPNLVTY NTLLRARSRYGSLHEVQQCLAIYQDMRKAGYKSNDIYLKELIEEWCEGVIKENNHKRE GLSSCKRTDLERPHSLLLEKIAVHLQMSTAESPAIDLRGLTKVEARIVVLAVLRMIKE NHILGHSVKDDMLIILGVSERHANAAKQKSEVKDAVMKLLQDELGLEVLLVEPQVKNG LVDLQTPIDADPVLLETVGKNSLSSKPLSSTRRPVILQRLKVTRKSLNHWLWRRADVI RR" mobile_element 2482221..2482652 /note="source:scaffold_7_CACTA_0795 2856 3300" /mobile_element_type="transposon:TIR/CACTA" gene 2483681..2487808 /locus_tag="TCM_022072" /note="dbxref CacaoGD:Thecc1EG022072" mRNA join(2483681..2484290,2484707..2484791,2484938..2485078, 2485189..2485277,2485702..2485890,2486001..2486131, 2486254..2486344,2487202..2487808) /locus_tag="TCM_022072" /product="Zinc finger C-x8-C-x5-C-x3-H type family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0308s00200.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043046t1" /inference="similar to AA sequence:ricco:29805.m001499" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:PASA:2:TSA:puevd3b021367t1a2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13310t1" mRNA join(2484009..2484290,2484707..2484791,2484938..2485078, 2485189..2485277,2485702..2485890,2486001..2486131, 2486254..2486356,2487202..2487637) /locus_tag="TCM_022072" /product="Zinc finger C-x8-C-x5-C-x3-H type family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0308s00200.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043046t1" /inference="similar to AA sequence:ricco:29805.m001499" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13310t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13310t1" CDS join(2484120..2484290,2484707..2484791,2484938..2485078, 2485189..2485277,2485702..2485890,2486001..2486131, 2486254..2486356,2487202..2487393) /locus_tag="TCM_022072" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29805.m001499; paralog of Thecc1EG043046t1" /codon_start=1 /product="Zinc finger C-x8-C-x5-C-x3-H type family protein isoform 1" /protein_id="EOY07713.1" /db_xref="TAIR:AT2G20280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0JHZ2" /translation="MPPKQPSKTELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQS VQPKPDSSKVAQKKKKEEEKAKEKELNDLFKIAVTQPKVPVGVDPKSIVCEFYKVGQC AKGFKCKFSHDLNVQRKGEKIDIYSDKRDQETMEDWDQETLEKVVESKTKEYNQNKPT DIVCKYFLEAVEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQMKALIEEEREKTPI EDEIENQRAKLKTSTPMTPELFIEWKKKKIAERDESLAAQKAERAKNDRMSGRELFMS DASLFVDDAEAYEKYQREEESDVAGNKANPDSAADGPSTSATSAADAEALPDDDDDDD DDDDDDELDMDELNELEASLAKTSIQIQEPNA" CDS join(2484120..2484290,2484707..2484791,2484938..2485078, 2485189..2485277,2485702..2485890,2486001..2486131, 2486254..2486344,2487202..2487393) /locus_tag="TCM_022072" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29805.m001499; paralog of Thecc1EG043046t1" /codon_start=1 /product="Zinc finger C-x8-C-x5-C-x3-H type family protein isoform 2" /protein_id="EOY07714.1" /db_xref="TAIR:AT2G20280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0JHZ2" /translation="MPPKQPSKTELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQS VQPKPDSSKVAQKKKKEEEKAKEKELNDLFKIAVTQPKVPVGVDPKSIVCEFYKVGQC AKGFKCKFSHDLNVQRKGEKIDIYSDKRDQETMEDWDQETLEKVVESKTKEYNQNKPT DIVCKYFLEAVEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQMKALIEEEREKTPI EDEIENQRAKLKTSTPMTPELFIEWKKKKIAERDESLAAQKAERAKNDRMSGRELFMS DASLFVDDAEAYEKYQREEESDVANPDSAADGPSTSATSAADAEALPDDDDDDDDDDD DDELDMDELNELEASLAKTSIQIQEPNA" mobile_element 2487244..2487314 /note="source:scaffold_5_CACTA_0617 5029 5104" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2487263..2487329) /note="source:CACAO_M_S_E33235_F289_scaffold_4 826 901" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2492222..2493087) /note="source:INTACT135F_F90_scaffold_2-int 13180 13989" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 2492237..2493276 /note="source:scaffold_2_CACTA_0244 12377 13302" /mobile_element_type="transposon:TIR/CACTA" gene complement(2494665..2496466) /locus_tag="TCM_022073" /note="dbxref CacaoGD:Thecc1EG022073" mRNA complement(join(2494665..2495035,2496242..2496466)) /locus_tag="TCM_022073" /product="2,3-bisphosphoglycerate-independent phosphoglycerate mutase" /inference="alignment:exonerate- protein:2:Phytozome:Sb07g024190.1" /inference="similar to AA sequence:Phytozome:GSVIVT01025542001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g11158t00001" CDS complement(join(2494767..2495035,2496242..2496398)) /locus_tag="TCM_022073" /codon_start=1 /product="2,3-bisphosphoglycerate-independent phosphoglycerate mutase" /protein_id="EOY07715.1" /db_xref="Phytozome:GSVIVT01025542001" /db_xref="TAIR:AT3G53470.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JAF4" /translation="MPMDIQAGIGSLTSHGFWRTSQKSTSPYPCSSFKIFCSKKGSRQ PQENGDNGGDKFSTDWDKAWTNFRKQSKKSIFSRFFPDKYVTWNPRQSNYPLSEEVDP IKRTERSNLMLWTSPGFTLVGATIIVAFLLLYTILAPVK" gene 2498704..2503056 /locus_tag="TCM_022074" /note="dbxref CacaoGD:Thecc1EG022074" mRNA join(2498704..2499400,2500004..2500061,2500158..2500281, 2500367..2500525,2500633..2500758,2500846..2500955, 2501708..2501767,2502093..2502217,2502354..2503056) /locus_tag="TCM_022074" /product="Homeodomain-like superfamily protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene18104" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015255t4" /inference="similar to AA sequence:Phytozome:POPTR_0006s13530.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:PASA:2:TSA:puevd3b021369t1a2; inference alignment:Newbler:10:TSA:cgbaB_g08654t00001" mRNA join(2498704..2499400,2500004..2500061,2500158..2500281, 2500367..2500525,2500633..2500758,2500846..2500955, 2501708..2501767,2502093..2502116,2502205..2502217, 2502354..2502372,2502486..2502546,2502783..2503044) /locus_tag="TCM_022074" /product="Homeodomain-like superfamily protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene18104" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015255t4" /inference="similar to AA sequence:Phytozome:POPTR_0006s13530.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08654t00001" mRNA join(2499122..2499400,2500004..2500061,2500158..2500281, 2500367..2500525,2500633..2500758,2500846..2500955, 2501708..2501767,2502093..2502213,2502354..2502758) /locus_tag="TCM_022074" /product="Homeodomain-like superfamily protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene18104" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015255t4" /inference="similar to AA sequence:Phytozome:POPTR_0006s13530.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00975t00001; alternateUTRof:Thecc1EG022074t2; inference alignment:Newbler:10:TSA:cgbaB_g08654t00001" CDS join(2499216..2499400,2500004..2500061,2500158..2500281, 2500367..2500525,2500633..2500758,2500846..2500955, 2501708..2501767,2502093..2502116,2502205..2502217, 2502354..2502372,2502486..2502546,2502783..2502962) /locus_tag="TCM_022074" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG015255t4" /codon_start=1 /product="Homeodomain-like superfamily protein isoform 1" /protein_id="EOY07716.1" /db_xref="Phytozome:POPTR_0006s13530.1" /db_xref="TAIR:AT3G09600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6R0G4" /translation="MNSSSSSPNPPLPPAPPPQQSSTSANAADGSGKKVRKPYTITKS RESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTIAHV PPPRPKRKAAHPYPQKASKNVLVSLQASMAYPSSINTIAPGYAPWDEASLLVNTAPSK IMPPQDEFTSLQGAEADIGSKGVARISNSGVSGIGSSSRTIPSSDMPNQGKQAPMLHG IPDFAEVYSFIGSIFDPDTQGHVQKLKEMDPINFETVLLLMRNLTVNLCSPDFEPVRK VMSSYDGLQATCLELTRWNGCHPVLTYQPDNCVYSCEVKGAHAAAFKGIHKLIKNPLA RGRKLFVLIDLPTIAGCCGGFHLSGLSFPDRVFCLFSR" CDS join(2499216..2499400,2500004..2500061,2500158..2500281, 2500367..2500525,2500633..2500758,2500846..2500955, 2501708..2501767,2502093..2502188) /locus_tag="TCM_022074" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG015255t4" /codon_start=1 /product="Homeodomain-like superfamily protein isoform 2" /protein_id="EOY07717.1" /db_xref="Phytozome:POPTR_0006s13530.1" /db_xref="TAIR:AT3G09600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6R0G4" /translation="MNSSSSSPNPPLPPAPPPQQSSTSANAADGSGKKVRKPYTITKS RESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTIAHV PPPRPKRKAAHPYPQKASKNVLVSLQASMAYPSSINTIAPGYAPWDEASLLVNTAPSK IMPPQDEFTSLQGAEADIGSKGVARISNSGVSGIGSSSRTIPSSDMPNQGKQAPMLHG IPDFAEVYSFIGSIFDPDTQGHVQKLKEMDPINFETVLLLMRNLTVNLCSPDFEPVRK VMSSYDVSTKTVGLGTGIIPQSQTNDISC" CDS join(2499216..2499400,2500004..2500061,2500158..2500281, 2500367..2500525,2500633..2500758,2500846..2500955, 2501708..2501767,2502093..2502188) /locus_tag="TCM_022074" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG015255t4" /codon_start=1 /product="Homeodomain-like superfamily protein isoform 2" /protein_id="EOY07718.1" /db_xref="Phytozome:POPTR_0006s13530.1" /db_xref="TAIR:AT3G09600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6R0G4" /translation="MNSSSSSPNPPLPPAPPPQQSSTSANAADGSGKKVRKPYTITKS RESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTIAHV PPPRPKRKAAHPYPQKASKNVLVSLQASMAYPSSINTIAPGYAPWDEASLLVNTAPSK IMPPQDEFTSLQGAEADIGSKGVARISNSGVSGIGSSSRTIPSSDMPNQGKQAPMLHG IPDFAEVYSFIGSIFDPDTQGHVQKLKEMDPINFETVLLLMRNLTVNLCSPDFEPVRK VMSSYDVSTKTVGLGTGIIPQSQTNDISC" gene 2503432..2505358 /locus_tag="TCM_022075" /note="dbxref CacaoGD:Thecc1EG022075" mRNA 2503432..2505358 /locus_tag="TCM_022075" /product="Hydroxyproline-rich glycoprotein family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s08510.1" /inference="similar to AA sequence:frave:gene18697" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13388t1" CDS 2503904..2505157 /locus_tag="TCM_022075" /note="dbxref frave:gene18697" /codon_start=1 /product="Hydroxyproline-rich glycoprotein family protein" /protein_id="EOY07719.1" /db_xref="TAIR:AT5G02850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZ00" /translation="MLQHQIVQSPARLGLTNPNSPSLQNPTPPKYPSSQPQPQPPPQQ QQQPSSTNLSATTTSSALLSLLPPLPRAQSLLLQMASLASKLFEVSPNRTVWVSAFRG SLPSFLSSQIQTTPPPPLESTPTSTKEVLSLFTSLQTQLFEAVAQLQEILDLQDFKQK IAREIRSNDGAILAFANKLKEAERVLDMLVDDYSDYRRPKRLKLEEDGGGGDDDSSTT TVASQLNLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYAFAD LDVGLPKAVEAKEKAVEAIIEPPPAQPVDTNPLANLAALQGLLPPNFTVPSGWKPGMP VELPTNLPVPPPGWKPGDPVPLPPLDSLPIPRMEEPHLRPVPPPGLHKPPEPIQVRHV ELDILDPDDDSSDYSSDEGSSDDED" gene 2506134..2508884 /locus_tag="TCM_022076" /note="dbxref CacaoGD:Thecc1EG022076" mRNA join(2506134..2507310,2508294..2508884) /locus_tag="TCM_022076" /product="Ribosomal protein L4/L1 family isoform 1" /inference="alignment:exonerate- protein:2:ricco:29805.m001495.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001268t1" /inference="similar to AA sequence:frave:gene17076" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06633t00001" CDS join(2506198..2507310,2508294..2508407) /locus_tag="TCM_022076" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene17076; paralog of Thecc1EG001268t1" /codon_start=1 /product="Ribosomal protein L4/L1 family isoform 1" /protein_id="EOY07720.1" /db_xref="TAIR:AT3G09630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P36578" /translation="MAAAAAAVRPLVSVQTIESDMATDACPTVPLADVMKASIRPDIV TFVHDNISKNRRQPYAVSKRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNM CRGGRMFAPTKIWRRWHRKINVNQKRYAVASAIAASAIPALVMARGHRIEAVSEMPLV VSDAVEGVEKTSAAIKVLKQVGAYPDVEKAKDSQGIRPGKGKMRNRRYISRKGPLIVY GTEGAKLVKAFRNIPGVEVANVERLNLLKLAPGGHLGRFVIWTKSAYEKLDSIYGSFD KPSEKKKGYVLPRAKMVNADLARIINSDEIQSVVKPIKNEIKRAPLKKNPLKNLNVML KLNPYAKTARRMALLAEAQRVKAKKEKLDKKRKPVSKEEATAIKTAGKAWYQTMISDS DYTEFENFSKWLGVSQ" mRNA join(<2506456..2507310,2508294..>2508336) /locus_tag="TCM_022076" /product="Ribosomal protein L4/L1 family isoform 2" /inference="alignment:exonerate- protein:2:ricco:29805.m001495.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001268t1" /inference="similar to AA sequence:frave:gene17076" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is medium, protein is partial; similar to RNA sequence, EST 0.58 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g12626t00001; inference alignment:Newbler:10:TSA:cgbaB_g06633t00001" CDS join(<2506456..2507310,2508294..>2508335) /locus_tag="TCM_022076" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene17076; paralog of Thecc1EG001268t1" /codon_start=1 /product="Ribosomal protein L4/L1 family isoform 2" /protein_id="EOY07721.1" /db_xref="TAIR:AT3G09630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P36578" /translation="PGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYA VASAIAASAIPALVMARGHRIEAVSEMPLVVSDAVEGVEKTSAAIKVLKQVGAYPDVE KAKDSQGIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEVANVERLNLL KLAPGGHLGRFVIWTKSAYEKLDSIYGSFDKPSEKKKGYVLPRAKMVNADLARIINSD EIQSVVKPIKNEIKRAPLKKNPLKNLNVMLKLNPYAKTARRMALLAEAQRVKAKKEKL DKKRKPVSKEEATAIKTAGKAWY" mobile_element complement(2511205..2511675) /note="source:scaffold_4_CACTA_0505 10639 11118" /mobile_element_type="transposon:TIR/CACTA" gene 2515458..2519235 /locus_tag="TCM_022077" /note="dbxref CacaoGD:Thecc1EG022077" mRNA join(2515458..2516381,2516526..2516551,2516670..2516700, 2516810..2516897,2516983..2517128,2517366..2517410, 2517522..2517625,2517722..2517858,2517961..2518077, 2518465..2519235) /locus_tag="TCM_022077" /product="AP2.7 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s13460.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042000t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s13460.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1778t3" mRNA join(2515458..2516381,2516526..2516551,2516670..2516700, 2516810..2516897,2516983..2517128,2517522..2517625, 2517722..2517858,2517961..2518077,2518465..2519235) /locus_tag="TCM_022077" /product="AP2.7 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s13460.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042000t3" /inference="similar to AA sequence:Phytozome:POPTR_0006s13460.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:PASA:2:TSA:puevd3b021372t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1778t3" CDS join(2515852..2516381,2516526..2516551,2516670..2516700, 2516810..2516897,2516983..2517128,2517366..2517410, 2517522..2517625,2517722..2517858,2517961..2518077, 2518465..2518722) /locus_tag="TCM_022077" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042000t1" /codon_start=1 /product="AP2.7 isoform 1" /protein_id="EOY07722.1" /db_xref="Phytozome:POPTR_0006s13460.1" /db_xref="TAIR:AT2G28550.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6BEL5" /translation="MMLDLNLSVISGGDDSVEMAGEALPDFSGYNNKQMENSGSFDSS IVNADTTTTTGDDDSSSNAAAADTFAYSFGILKTTEKRENNQRTIPLFPVNVQGGGGK STGSSQKEWLDLGKSREASEQHCGAAEQRIAAQQQQQVQLKQQVKKSRRGPRSRSSQY RGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNVND YEEDVKQMSNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYI YLGLFDSEIEAARAYDKAAIKCNGREAVTNFEPSTYEGELISESDNGDRNQGLDLNLG IAPPYTSDPQKENNNSDNFAIQRGWDGLPVETGARIDNSAPATMRVQPSLGQAMAFKH LQNWNGANPSFFPVYRERAIEKRMEVDYAPNWAWQIQGLYGGANPVPLFPTAASSGFS SSTITSPSAAAGQLCIPNTTFLHRHHFPPAITNPNISHFYCQS" CDS join(2515852..2516381,2516526..2516551,2516670..2516700, 2516810..2516897,2516983..2517128,2517522..2517625, 2517722..2517858,2517961..2518077,2518465..2518722) /locus_tag="TCM_022077" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042000t3" /codon_start=1 /product="AP2.7 isoform 2" /protein_id="EOY07723.1" /db_xref="Phytozome:POPTR_0006s13460.1" /db_xref="TAIR:AT2G28550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6BEL5" /translation="MMLDLNLSVISGGDDSVEMAGEALPDFSGYNNKQMENSGSFDSS IVNADTTTTTGDDDSSSNAAAADTFAYSFGILKTTEKRENNQRTIPLFPVNVQGGGGK STGSSQKEWLDLGKSREASEQHCGAAEQRIAAQQQQQVQLKQQVKKSRRGPRSRSSQY RGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNVND YEEDVKQMSNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKAY DKAAIKCNGREAVTNFEPSTYEGELISESDNGDRNQGLDLNLGIAPPYTSDPQKENNN SDNFAIQRGWDGLPVETGARIDNSAPATMRVQPSLGQAMAFKHLQNWNGANPSFFPVY RERAIEKRMEVDYAPNWAWQIQGLYGGANPVPLFPTAASSGFSSSTITSPSAAAGQLC IPNTTFLHRHHFPPAITNPNISHFYCQS" gene complement(2520365..2521524) /locus_tag="TCM_022078" /note="dbxref CacaoGD:Thecc1EG022078" mRNA complement(2520365..2521524) /locus_tag="TCM_022078" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.19 coverage" CDS complement(2520871..2521071) /locus_tag="TCM_022078" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07724.1" /translation="MTSFTLHTKQGGAVAQTADENISLDMHGKFPKQYPCFELLVVNL PTSRVPIYQVGFQECILEIEMK" gene complement(2522335..2530139) /locus_tag="TCM_022079" /note="dbxref CacaoGD:Thecc1EG022079" mRNA complement(join(2522335..2523410,2523495..2523593, 2523672..2523700,2523806..2524397,2524468..2524575, 2524877..2526267,2526349..2526419,2526684..2526822, 2527689..2527780,2527882..2527930,2528002..2528085, 2528201..2528310,2528460..2528613,2528695..2528822, 2528933..2529032,2529885..2530139)) /locus_tag="TCM_022079" /product="RNA binding family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s08560.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s13450.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1826t1" mRNA complement(join(2522335..2523410,2523495..2523593, 2523684..2524397,2524468..2524575,2524877..2526267, 2526349..2526419,2526684..2526822,2527689..2527780, 2527882..2527930,2528002..2528085,2528201..2528310, 2528460..2528613,2528695..2528822,2528933..2529032, 2529885..2530139)) /locus_tag="TCM_022079" /product="RNA binding family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s08560.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s13450.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:PASA:2:TSA:puevd3b021374t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1826t1" mRNA complement(join(2523127..2523410,2523495..2523593, 2523672..2524397,2524468..2524575,2524877..2526267, 2526349..2526419,2526684..2526822,2527689..2527780, 2527882..2527932,2528002..2528085,2528201..2528310, 2528460..2528613,2528695..2528822,2528933..2529032, 2529966..2530029)) /locus_tag="TCM_022079" /product="RNA binding family protein, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s08560.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s13450.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1826t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1826t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1054t18" mRNA complement(join(2523127..2523410,2523495..2523593, 2523672..2524397,2524468..2524575,2524877..2526267, 2526349..2526419,2526684..2526822,2527689..2527780, 2527882..2527930,2528002..2528085,2528201..2528310, 2528460..2528613,2528695..2528822,2528933..2529032, 2529885..2529997)) /locus_tag="TCM_022079" /product="RNA binding family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s08560.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s13450.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1826t1; alternateUTRof:Thecc1EG022079t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1826t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1054t18" CDS complement(join(2523289..2523410,2523495..2523593, 2523672..2523700,2523806..2524397,2524468..2524575, 2524877..2526267,2526349..2526419,2526684..2526822, 2527689..2527780,2527882..2527930,2528002..2528085, 2528201..2528310,2528460..2528613,2528695..2528822, 2528933..2529025)) /locus_tag="TCM_022079" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="RNA binding family protein, putative isoform 1" /protein_id="EOY07725.1" /db_xref="Phytozome:POPTR_0006s13450.1" /db_xref="TAIR:AT3G45630.1" /translation="MSEKGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMEMA EKDNTEGRCPACRSTYDKEKIVGMAANCERLVAEINSERKQKSQKTKPKVSEGRMHLS NIRVIKRNLVYIIGLPLDLADEDLLQRREYFGQYGKVLKLSISKTANGVIQHSSNNSC CVYVTYSKEEEAVCCIQSVHSSVLEGRSLRACFGTTKYCHAWLRNVPCNIPDCLYLHD YGSQEDSFTKDEIVSAFSRSRMQQTIGASNNLHRRSGNVLPPPVGEGIGSSISSSAKP VAKTHSNSRESCVDGGTGTGNSTVLPAASSWVMRVSASLSPVPNMSDSSTLLNKRPDA YAGPHVASEVVSTKIPTHDVWRTVTAEESSEIHYNCRTDSLEFSEEYPDGDYQTCTSN RKVDTLSNMTSTPVTCRDHLPDTSASKGMDIAAPTNIESSVNYCCKSSHSSGSFDENF NADQDFQDLSSICTLSHTKNEESVPIIPNSSVPTHTLCSLPRSPSFQEETNEQNVNAP SLPVHGKSMTTEDLLDFDDQQLKGLEDICNLPSASCSISLQHNLNKSSYNTWQQGKIK HQPDLLAHSGIFPMHDEVSFPLTYENLVSSNGFHNYIDGCFADLDRRFDYSNMSGSGN GRCVNDIASVENYTPDVGEDSIISKILSMELDPWEDSLTSPDSLAKLLRETKEQRASV KPPNLRKVTDNNQSRFSFARQDDFSNQASHLDDSLGSMMDLNKCSAHHDFNAINDLCI DKYQNPCSFNFSEESNNLLNNHPFVSSKLSVSKSPASIPPGFPVPNRTPPPGFSTSGR MHLALDAAASHLLQTSVTQINSIGGSGDVEFLDPAILEVGQGVMAMGLNKSGFDTRTS APHHSRLDHNPGFDTRTSAPRHSSFDHDARLLMQQSLYAHQNQAFQDHSRNRIFQSDD TYTRSPMLLDQSPAYNPFSFPQSTIQQLRNAHMSNGHGGSWNEGRSFSDLRLPELLKN GGLGFNKLTPSYEDMKCQVSSSSNLYNRGFAMFLAFAGIYLEGTWSLPCVEFSCALSQ RQTCRTTNQHSNLTQWVRAGSEHRSQRRRIDDYCTHRGVHTLRDLQMEATGAAAPI" mRNA complement(join(2523564..2523593,2523684..2524397, 2524468..2524575,2524877..2526267,2526349..2526419, 2526684..2526825,2528002..2528085,2528201..2528310, 2528460..2528613,2528695..2528820)) /locus_tag="TCM_022079" /product="RNA binding family protein, putative isoform 7" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s08560.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s13450.1" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1063t20; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1826t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1054t18" mRNA complement(join(2523566..2523593,2523684..2524397, 2524468..2524575,2524877..2526267,2526349..2526419, 2526684..2526822,2527689..2527780,2527882..2527930, 2528002..2528085,2528201..2528310,2528460..2528613, 2528695..2528822,2528933..2529382)) /locus_tag="TCM_022079" /product="RNA binding family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s08560.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s13450.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1058t10; alternateUTRof:Thecc1EG022079t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1826t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1054t18" CDS complement(join(2523802..2524397,2524468..2524575, 2524877..2526267,2526349..2526419,2526684..2526822, 2527689..2527780,2527882..2527930,2528002..2528085, 2528201..2528310,2528460..2528613,2528695..2528822, 2528933..2529025)) /locus_tag="TCM_022079" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="RNA binding family protein, putative isoform 2" /protein_id="EOY07726.1" /db_xref="Phytozome:POPTR_0006s13450.1" /db_xref="TAIR:AT3G45630.1" /translation="MSEKGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMEMA EKDNTEGRCPACRSTYDKEKIVGMAANCERLVAEINSERKQKSQKTKPKVSEGRMHLS NIRVIKRNLVYIIGLPLDLADEDLLQRREYFGQYGKVLKLSISKTANGVIQHSSNNSC CVYVTYSKEEEAVCCIQSVHSSVLEGRSLRACFGTTKYCHAWLRNVPCNIPDCLYLHD YGSQEDSFTKDEIVSAFSRSRMQQTIGASNNLHRRSGNVLPPPVGEGIGSSISSSAKP VAKTHSNSRESCVDGGTGTGNSTVLPAASSWVMRVSASLSPVPNMSDSSTLLNKRPDA YAGPHVASEVVSTKIPTHDVWRTVTAEESSEIHYNCRTDSLEFSEEYPDGDYQTCTSN RKVDTLSNMTSTPVTCRDHLPDTSASKGMDIAAPTNIESSVNYCCKSSHSSGSFDENF NADQDFQDLSSICTLSHTKNEESVPIIPNSSVPTHTLCSLPRSPSFQEETNEQNVNAP SLPVHGKSMTTEDLLDFDDQQLKGLEDICNLPSASCSISLQHNLNKSSYNTWQQGKIK HQPDLLAHSGIFPMHDEVSFPLTYENLVSSNGFHNYIDGCFADLDRRFDYSNMSGSGN GRCVNDIASVENYTPDVGEDSIISKILSMELDPWEDSLTSPDSLAKLLRETKEQRASV KPPNLRKVTDNNQSRFSFARQDDFSNQASHLDDSLGSMMDLNKCSAHHDFNAINDLCI DKYQNPCSFNFSEESNNLLNNHPFVSSKLSVSKSPASIPPGFPVPNRTPPPGFSTSGR MHLALDAAASHLLQTSVTQINSIGGSGDVEFLDPAILEVGQGVMAMGLNKSGFDTRTS APHHSRLDHNPGFDTRTSAPRHSSFDHDARLLMQQSLYAHQNQAFQDHSRNRIFQSDD TYTRSPMLLDQSPAYNPFSFPQSTIQQLRNAHMSNGHGGSWNEGRSFSDLRLPELLKN GGLGFNKLTPSYEDMKCQVSSSSNLYNRGFAM" CDS complement(join(2523802..2524397,2524468..2524575, 2524877..2526267,2526349..2526419,2526684..2526822, 2527689..2527780,2527882..2527930,2528002..2528085, 2528201..2528310,2528460..2528613,2528695..2528822, 2528933..2529025)) /locus_tag="TCM_022079" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="RNA binding family protein, putative isoform 2" /protein_id="EOY07727.1" /db_xref="Phytozome:POPTR_0006s13450.1" /db_xref="TAIR:AT3G45630.1" /translation="MSEKGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMEMA EKDNTEGRCPACRSTYDKEKIVGMAANCERLVAEINSERKQKSQKTKPKVSEGRMHLS NIRVIKRNLVYIIGLPLDLADEDLLQRREYFGQYGKVLKLSISKTANGVIQHSSNNSC CVYVTYSKEEEAVCCIQSVHSSVLEGRSLRACFGTTKYCHAWLRNVPCNIPDCLYLHD YGSQEDSFTKDEIVSAFSRSRMQQTIGASNNLHRRSGNVLPPPVGEGIGSSISSSAKP VAKTHSNSRESCVDGGTGTGNSTVLPAASSWVMRVSASLSPVPNMSDSSTLLNKRPDA YAGPHVASEVVSTKIPTHDVWRTVTAEESSEIHYNCRTDSLEFSEEYPDGDYQTCTSN RKVDTLSNMTSTPVTCRDHLPDTSASKGMDIAAPTNIESSVNYCCKSSHSSGSFDENF NADQDFQDLSSICTLSHTKNEESVPIIPNSSVPTHTLCSLPRSPSFQEETNEQNVNAP SLPVHGKSMTTEDLLDFDDQQLKGLEDICNLPSASCSISLQHNLNKSSYNTWQQGKIK HQPDLLAHSGIFPMHDEVSFPLTYENLVSSNGFHNYIDGCFADLDRRFDYSNMSGSGN GRCVNDIASVENYTPDVGEDSIISKILSMELDPWEDSLTSPDSLAKLLRETKEQRASV KPPNLRKVTDNNQSRFSFARQDDFSNQASHLDDSLGSMMDLNKCSAHHDFNAINDLCI DKYQNPCSFNFSEESNNLLNNHPFVSSKLSVSKSPASIPPGFPVPNRTPPPGFSTSGR MHLALDAAASHLLQTSVTQINSIGGSGDVEFLDPAILEVGQGVMAMGLNKSGFDTRTS APHHSRLDHNPGFDTRTSAPRHSSFDHDARLLMQQSLYAHQNQAFQDHSRNRIFQSDD TYTRSPMLLDQSPAYNPFSFPQSTIQQLRNAHMSNGHGGSWNEGRSFSDLRLPELLKN GGLGFNKLTPSYEDMKCQVSSSSNLYNRGFAM" CDS complement(join(2523802..2524397,2524468..2524575, 2524877..2526267,2526349..2526419,2526684..2526822, 2527689..2527780,2527882..2527930,2528002..2528085, 2528201..2528310,2528460..2528613,2528695..2528822, 2528933..2529025)) /locus_tag="TCM_022079" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="RNA binding family protein, putative isoform 2" /protein_id="EOY07729.1" /db_xref="Phytozome:POPTR_0006s13450.1" /db_xref="TAIR:AT5G60170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HPP2" /translation="MSEKGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMEMA EKDNTEGRCPACRSTYDKEKIVGMAANCERLVAEINSERKQKSQKTKPKVSEGRMHLS NIRVIKRNLVYIIGLPLDLADEDLLQRREYFGQYGKVLKLSISKTANGVIQHSSNNSC CVYVTYSKEEEAVCCIQSVHSSVLEGRSLRACFGTTKYCHAWLRNVPCNIPDCLYLHD YGSQEDSFTKDEIVSAFSRSRMQQTIGASNNLHRRSGNVLPPPVGEGIGSSISSSAKP VAKTHSNSRESCVDGGTGTGNSTVLPAASSWVMRVSASLSPVPNMSDSSTLLNKRPDA YAGPHVASEVVSTKIPTHDVWRTVTAEESSEIHYNCRTDSLEFSEEYPDGDYQTCTSN RKVDTLSNMTSTPVTCRDHLPDTSASKGMDIAAPTNIESSVNYCCKSSHSSGSFDENF NADQDFQDLSSICTLSHTKNEESVPIIPNSSVPTHTLCSLPRSPSFQEETNEQNVNAP SLPVHGKSMTTEDLLDFDDQQLKGLEDICNLPSASCSISLQHNLNKSSYNTWQQGKIK HQPDLLAHSGIFPMHDEVSFPLTYENLVSSNGFHNYIDGCFADLDRRFDYSNMSGSGN GRCVNDIASVENYTPDVGEDSIISKILSMELDPWEDSLTSPDSLAKLLRETKEQRASV KPPNLRKVTDNNQSRFSFARQDDFSNQASHLDDSLGSMMDLNKCSAHHDFNAINDLCI DKYQNPCSFNFSEESNNLLNNHPFVSSKLSVSKSPASIPPGFPVPNRTPPPGFSTSGR MHLALDAAASHLLQTSVTQINSIGGSGDVEFLDPAILEVGQGVMAMGLNKSGFDTRTS APHHSRLDHNPGFDTRTSAPRHSSFDHDARLLMQQSLYAHQNQAFQDHSRNRIFQSDD TYTRSPMLLDQSPAYNPFSFPQSTIQQLRNAHMSNGHGGSWNEGRSFSDLRLPELLKN GGLGFNKLTPSYEDMKCQVSSSSNLYNRGFAM" CDS complement(join(2523802..2524397,2524468..2524575, 2524877..2526267,2526349..2526419,2526684..2526825, 2528002..2528085,2528201..2528310,2528460..2528613, 2528695..2528795)) /locus_tag="TCM_022079" /note="encoded by transcript variant 7; alternatively spliced" /codon_start=1 /product="RNA binding family protein, putative isoform 7" /protein_id="EOY07731.1" /db_xref="Phytozome:POPTR_0006s13450.1" /db_xref="TAIR:AT3G45630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7LJL4" /translation="MEMAEKDNTEGRCPACRSTYDKEKIVGMAANCERLVAEINSERK QKSQKTKPKVSEGRMHLSNIRVIKRNLVYIIGLPLDLADEDLLQRREYFGQYGKVLKL SISKTANGVIQHSSNNSCCVYVTYSKEEEAVCCIQSVHSSVLEGRSLRRSRMQQTIGA SNNLHRRSGNVLPPPVGEGIGSSISSSAKPVAKTHSNSRESCVDGGTGTGNSTVLPAA SSWVMRVSASLSPVPNMSDSSTLLNKRPDAYAGPHVASEVVSTKIPTHDVWRTVTAEE SSEIHYNCRTDSLEFSEEYPDGDYQTCTSNRKVDTLSNMTSTPVTCRDHLPDTSASKG MDIAAPTNIESSVNYCCKSSHSSGSFDENFNADQDFQDLSSICTLSHTKNEESVPIIP NSSVPTHTLCSLPRSPSFQEETNEQNVNAPSLPVHGKSMTTEDLLDFDDQQLKGLEDI CNLPSASCSISLQHNLNKSSYNTWQQGKIKHQPDLLAHSGIFPMHDEVSFPLTYENLV SSNGFHNYIDGCFADLDRRFDYSNMSGSGNGRCVNDIASVENYTPDVGEDSIISKILS MELDPWEDSLTSPDSLAKLLRETKEQRASVKPPNLRKVTDNNQSRFSFARQDDFSNQA SHLDDSLGSMMDLNKCSAHHDFNAINDLCIDKYQNPCSFNFSEESNNLLNNHPFVSSK LSVSKSPASIPPGFPVPNRTPPPGFSTSGRMHLALDAAASHLLQTSVTQINSIGGSGD VEFLDPAILEVGQGVMAMGLNKSGFDTRTSAPHHSRLDHNPGFDTRTSAPRHSSFDHD ARLLMQQSLYAHQNQAFQDHSRNRIFQSDDTYTRSPMLLDQSPAYNPFSFPQSTIQQL RNAHMSNGHGGSWNEGRSFSDLRLPELLKNGGLGFNKLTPSYEDMKCQVSSSSNLYNR GFAM" CDS complement(join(2523802..2524397,2524468..2524575, 2524877..2526267,2526349..2526419,2526684..2526815)) /locus_tag="TCM_022079" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="RNA binding family protein, putative isoform 4" /protein_id="EOY07728.1" /db_xref="Phytozome:POPTR_0006s13450.1" /db_xref="TAIR:AT5G60170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HPP2" /translation="MQQTIGASNNLHRRSGNVLPPPVGEGIGSSISSSAKPVAKTHSN SRESCVDGGTGTGNSTVLPAASSWVMRVSASLSPVPNMSDSSTLLNKRPDAYAGPHVA SEVVSTKIPTHDVWRTVTAEESSEIHYNCRTDSLEFSEEYPDGDYQTCTSNRKVDTLS NMTSTPVTCRDHLPDTSASKGMDIAAPTNIESSVNYCCKSSHSSGSFDENFNADQDFQ DLSSICTLSHTKNEESVPIIPNSSVPTHTLCSLPRSPSFQEETNEQNVNAPSLPVHGK SMTTEDLLDFDDQQLKGLEDICNLPSASCSISLQHNLNKSSYNTWQQGKIKHQPDLLA HSGIFPMHDEVSFPLTYENLVSSNGFHNYIDGCFADLDRRFDYSNMSGSGNGRCVNDI ASVENYTPDVGEDSIISKILSMELDPWEDSLTSPDSLAKLLRETKEQRASVKPPNLRK VTDNNQSRFSFARQDDFSNQASHLDDSLGSMMDLNKCSAHHDFNAINDLCIDKYQNPC SFNFSEESNNLLNNHPFVSSKLSVSKSPASIPPGFPVPNRTPPPGFSTSGRMHLALDA AASHLLQTSVTQINSIGGSGDVEFLDPAILEVGQGVMAMGLNKSGFDTRTSAPHHSRL DHNPGFDTRTSAPRHSSFDHDARLLMQQSLYAHQNQAFQDHSRNRIFQSDDTYTRSPM LLDQSPAYNPFSFPQSTIQQLRNAHMSNGHGGSWNEGRSFSDLRLPELLKNGGLGFNK LTPSYEDMKCQVSSSSNLYNRGFAM" mRNA complement(join(2524468..2526267,2526349..2526419, 2526684..2526822,2527689..2527780,2527882..2527930, 2528002..2528085,2528201..2528310,2528460..2528613, 2528695..2528822,2528933..2529032,2529966..2530066)) /locus_tag="TCM_022079" /product="RNA binding family protein, putative isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s08560.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s08560.5" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1054t12; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1054t18; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1826t1" CDS complement(join(2524836..2526267,2526349..2526419, 2526684..2526822,2527689..2527780,2527882..2527930, 2528002..2528085,2528201..2528310,2528460..2528613, 2528695..2528822,2528933..2529025)) /locus_tag="TCM_022079" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="RNA binding family protein, putative isoform 6" /protein_id="EOY07730.1" /db_xref="Phytozome:POPTR_0016s08560.5" /translation="MSEKGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMEMA EKDNTEGRCPACRSTYDKEKIVGMAANCERLVAEINSERKQKSQKTKPKVSEGRMHLS NIRVIKRNLVYIIGLPLDLADEDLLQRREYFGQYGKVLKLSISKTANGVIQHSSNNSC CVYVTYSKEEEAVCCIQSVHSSVLEGRSLRACFGTTKYCHAWLRNVPCNIPDCLYLHD YGSQEDSFTKDEIVSAFSRSRMQQTIGASNNLHRRSGNVLPPPVGEGIGSSISSSAKP VAKTHSNSRESCVDGGTGTGNSTVLPAASSWVMRVSASLSPVPNMSDSSTLLNKRPDA YAGPHVASEVVSTKIPTHDVWRTVTAEESSEIHYNCRTDSLEFSEEYPDGDYQTCTSN RKVDTLSNMTSTPVTCRDHLPDTSASKGMDIAAPTNIESSVNYCCKSSHSSGSFDENF NADQDFQDLSSICTLSHTKNEESVPIIPNSSVPTHTLCSLPRSPSFQEETNEQNVNAP SLPVHGKSMTTEDLLDFDDQQLKGLEDICNLPSASCSISLQHNLNKSSYNTWQQGKIK HQPDLLAHSGIFPMHDEVSFPLTYENLVSSNGFHNYIDGCFADLDRRFDYSNMSGSGN GRCVNDIASVENYTPDVGEDSIISKILSMELDPWEDSLTSPDSLAKLLRETKEQRASV KPPNLRKVTDNNQSRFSFARQDDFSNQASHLDDSLGSMMDLNKCSAHHDFNAINDLCI DKYQNPCSFNFSEESNNLLNNHPFVSSKLSGEFYLMHHLSFGR" gene 2531526..2534731 /locus_tag="TCM_022080" /note="dbxref CacaoGD:Thecc1EG022080" mRNA join(2531526..2531663,2531787..2531961,2532081..2532146, 2532930..2532978,2533089..2533171,2533285..2533364, 2533990..2534092,2534225..2534287,2534403..2534731) /locus_tag="TCM_022080" /product="Ascorbate peroxidase 2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400003107.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042003t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s08580.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1318t2; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1282t4" mRNA join(2531526..2531663,2531787..2531961,2532081..2532146, 2532930..2532978,2533089..2533171,2533285..2533364, 2533990..2534092,2534225..2534283,2534403..2534731) /locus_tag="TCM_022080" /product="Ascorbate peroxidase 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400003107.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042003t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s08580.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1282t4; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1282t4" CDS join(2531542..2531663,2531787..2531961,2532081..2532146, 2532930..2532978,2533089..2533171,2533285..2533364, 2533990..2534092,2534225..2534283,2534403..2534421) /locus_tag="TCM_022080" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042003t1" /codon_start=1 /product="Ascorbate peroxidase 2 isoform 1" /protein_id="EOY07732.1" /db_xref="Phytozome:POPTR_0016s08580.1" /db_xref="TAIR:AT3G09640.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1PER6" /translation="MAKKCYPTVSEEYQKAVQRCKRKLRGLIAEKHCAPIILRLAWHS AGTFDVNTKTGGPFGTIRHPDELAHDANNGLDIAVRLLEPIKEQFPILSFADFYQLAG VVAVEVTGGPEIPFHPGRPDKTEPPPEGRLPEATKGSDHLRDVFGHMGLSDKDIVALS GGHTLGRCHKERSGFEGPWTNNPLIFDNSYFKELLSGEKEGLIQLPTDKALLEDPVFR PLVEKYAADEDAFFADYADSHLKLSELGFADAE" CDS join(2531542..2531663,2531787..2531961,2532081..2532146, 2532930..2532978,2533089..2533171,2533285..2533364, 2533990..2534092,2534225..2534287) /locus_tag="TCM_022080" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042003t1" /codon_start=1 /product="Ascorbate peroxidase 2 isoform 2" /protein_id="EOY07733.1" /db_xref="Phytozome:POPTR_0016s08580.1" /db_xref="TAIR:AT3G09640.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1PER6" /translation="MAKKCYPTVSEEYQKAVQRCKRKLRGLIAEKHCAPIILRLAWHS AGTFDVNTKTGGPFGTIRHPDELAHDANNGLDIAVRLLEPIKEQFPILSFADFYQLAG VVAVEVTGGPEIPFHPGRPDKTEPPPEGRLPEATKGSDHLRDVFGHMGLSDKDIVALS GGHTLGRCHKERSGFEGPWTNNPLIFDNSYFKELLSGEKEGLIQLPTDKALLEDPVFR PLVEKYAADEDAFFADYADSHLKLSELG" mobile_element 2533374..2533850 /note="source:CACAO_M_E34383_F74_scaffold_5 1 477" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2537687..2537832) /note="source:CACAO_PIF_E465_scaffold_115 267 418" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 2537741..2537844 /note="source:scaffold_5_CACTA_0580 11357 11459" /mobile_element_type="transposon:TIR/CACTA" gene 2540117..2549184 /locus_tag="TCM_022082" /note="dbxref CacaoGD:Thecc1EG022082" mRNA join(2540117..2540713,2541971..2542502,2542814..2543098, 2543228..2543319,2543521..2543653,2543770..2543841, 2543966..2544034,2544111..2544182,2544401..2544469, 2545234..2545385,2545471..2545712,2546594..2546720, 2546789..2546857,2546938..2547124,2547485..2547620, 2547985..2549149) /locus_tag="TCM_022082" /product="Leucine-rich repeat protein kinase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025552001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010695t1" /inference="similar to AA sequence:Phytozome:Glyma19g36210.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc705t7; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc705t7" mRNA join(2540118..2540713,2541971..2542502,2542814..2543319, 2543521..2543653,2543770..2543841,2543966..2544034, 2544111..2544182,2544401..2544469,2545234..2545385, 2545471..2545712,2546594..2546720,2546789..2546857, 2546938..2547124,2547485..2547620,2547985..2549149) /locus_tag="TCM_022082" /product="Leucine-rich repeat protein kinase family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025552001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010695t1" /inference="similar to AA sequence:Phytozome:Glyma19g36210.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc178t21_C1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc705t7" mRNA join(2540551..2540713,2541971..2542502,2542814..2543319, 2543521..2543653,2543770..2543841,2543966..2544034, 2544111..2544182,2544401..2544469,2545234..2545385, 2545471..2545712,2546594..2546720,2546789..2546860, 2546938..2547124,2547485..2547620,2547985..2548774) /locus_tag="TCM_022082" /product="Leucine-rich repeat protein kinase family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025552001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010695t1" /inference="similar to AA sequence:Phytozome:Glyma19g36210.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1830t1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc705t7" CDS join(2540635..2540713,2541971..2542502,2542814..2543319, 2543521..2543653,2543770..2543841,2543966..2544034, 2544111..2544182,2544401..2544469,2545234..2545385, 2545471..2545712,2546594..2546720,2546789..2546860, 2546938..2547124,2547485..2547620,2547985..2548320) /locus_tag="TCM_022082" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG010695t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein isoform 4" /protein_id="EOY07737.1" /db_xref="Phytozome:Glyma19g36210.1" /db_xref="TAIR:AT2G37050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C0LGM1" /translation="MEKRLLLLLLLFPLLLLLDSCSAQVQGFVSLNCGGNGKVMDELG LQWIADDFLTYGEIASISVLNESRKQYMTLRHFPADSRKYCYKLNVISRTRYLVRATF LYGNFDNNNVYPKFDISLGATHWSTIVISDANTIEKVELIFLATSPTISVCLSNATTG KPFISTLELRQFNGSIYYTPFEESFYLSVSARINFGADSEAPVRYPDDPFDRIWESDS VKKANYLVDVAAGTEKVSTDKPIEIGGDERAPQKVMQTAVVGRNGSLTYRLNLDGFPG NGWAFTYFAEIEDLAPDESRKFRLVLPGQPDLSKAIVNIQENAQGKYRVYEPGYPNIT LPFVLSFRFGKTSDSSRGPLLNAMEISRYLEKNDGSLDGAVMANMVELYSSVGWAQEG GDPCLPVPWSWVECNSDLQPRIVSVHLSSKNLTGNIPSDLTKLSSLVELWLDGNSLAG PIPDFTGCVDLKIIHLENNRLTGELPSSLVNLPNLKELSVQNNMLSGRVPSGLLNKDL VLNYAGNINLHEGGGRGRHLSIIIGSSVGAAVLLIATILSCLILRKGKKQREQEQFHH SLPIQSQRMALSNAPAEAAHCFTLAEIEDATNNFEKKIGSGGFGVVYYGKMKDGKEIA VKVLISNSFQGKREFTNEVTLLSRIHHRNLVQFLGYCQEDGRSMLVYEFMHNGTLKER LYGPLTQEHGINWIKRLEIAEDAAKGSIEYLHTGCVPAIIHRDLKTSNILLDKHMRAK VSDFGLSKLAVDGVSHVSSIVRGTVGYLDPEYYISQQLTDKSDVYSFGVILLELMSGQ EAISNESFGVNCRNIVQWAKLHIESGNIQGIIDPSLYNEYDIQSMWKIAEKALNCVQP HGHMRPSISEVLKEIQDAILIEKEGIIVREGNSDDMSRNSANSSLNPGSLDLVATDNY LSLDASIARPVAR" CDS join(2540635..2540713,2541971..2542502,2542814..2543319, 2543521..2543653,2543770..2543841,2543966..2544034, 2544111..2544182,2544401..2544469,2545234..2545385, 2545471..2545712,2546594..2546720,2546789..2546857, 2546938..2547124,2547485..2547620,2547985..2548320) /locus_tag="TCM_022082" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG010695t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein isoform 3" /protein_id="EOY07736.1" /db_xref="Phytozome:Glyma19g36210.1" /db_xref="TAIR:AT2G37050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C0LGM1" /translation="MEKRLLLLLLLFPLLLLLDSCSAQVQGFVSLNCGGNGKVMDELG LQWIADDFLTYGEIASISVLNESRKQYMTLRHFPADSRKYCYKLNVISRTRYLVRATF LYGNFDNNNVYPKFDISLGATHWSTIVISDANTIEKVELIFLATSPTISVCLSNATTG KPFISTLELRQFNGSIYYTPFEESFYLSVSARINFGADSEAPVRYPDDPFDRIWESDS VKKANYLVDVAAGTEKVSTDKPIEIGGDERAPQKVMQTAVVGRNGSLTYRLNLDGFPG NGWAFTYFAEIEDLAPDESRKFRLVLPGQPDLSKAIVNIQENAQGKYRVYEPGYPNIT LPFVLSFRFGKTSDSSRGPLLNAMEISRYLEKNDGSLDGAVMANMVELYSSVGWAQEG GDPCLPVPWSWVECNSDLQPRIVSVHLSSKNLTGNIPSDLTKLSSLVELWLDGNSLAG PIPDFTGCVDLKIIHLENNRLTGELPSSLVNLPNLKELSVQNNMLSGRVPSGLLNKDL VLNYAGNINLHEGGGRGRHLSIIIGSSVGAAVLLIATILSCLILRKGKKQREQEQFHH SLPIQSQRMALSNAPAEAAHCFTLAEIEDATNNFEKKIGSGGFGVVYYGKMKDGKEIA VKVLISNSFQGKREFTNEVTLLSRIHHRNLVQFLGYCQEDGRSMLVYEFMHNGTLKER LYGPLTQEHGINWIKRLEIAEDAAKGIEYLHTGCVPAIIHRDLKTSNILLDKHMRAKV SDFGLSKLAVDGVSHVSSIVRGTVGYLDPEYYISQQLTDKSDVYSFGVILLELMSGQE AISNESFGVNCRNIVQWAKLHIESGNIQGIIDPSLYNEYDIQSMWKIAEKALNCVQPH GHMRPSISEVLKEIQDAILIEKEGIIVREGNSDDMSRNSANSSLNPGSLDLVATDNYL SLDASIARPVAR" CDS join(2540635..2540713,2541971..2542502,2542814..2543098, 2543228..2543319,2543521..2543653,2543770..2543841, 2543966..2544034,2544111..2544182,2544401..2544469, 2545234..2545385,2545471..2545712,2546594..2546720, 2546789..2546857,2546938..2547124,2547485..2547620, 2547985..2548320) /locus_tag="TCM_022082" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG010695t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein isoform 2" /protein_id="EOY07735.1" /db_xref="Phytozome:Glyma19g36210.1" /db_xref="TAIR:AT2G37050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C0LGM1" /translation="MEKRLLLLLLLFPLLLLLDSCSAQVQGFVSLNCGGNGKVMDELG LQWIADDFLTYGEIASISVLNESRKQYMTLRHFPADSRKYCYKLNVISRTRYLVRATF LYGNFDNNNVYPKFDISLGATHWSTIVISDANTIEKVELIFLATSPTISVCLSNATTG KPFISTLELRQFNGSIYYTPFEESFYLSVSARINFGADSEAPVRYPDDPFDRIWESDS VKKANYLVDVAAGTEKVSTDKPIEIGGDERAPQKVMQTAVVGRNGSLTYRLNLDGFPG NGWAFTYFAEIEDLAPDESRKFRFGKTSDSSRGPLLNAMEISRYLEKNDGSLDGAVMA NMVELYSSVGWAQEGGDPCLPVPWSWVECNSDLQPRIVSVHLSSKNLTGNIPSDLTKL SSLVELWLDGNSLAGPIPDFTGCVDLKIIHLENNRLTGELPSSLVNLPNLKELSVQNN MLSGRVPSGLLNKDLVLNYAGNINLHEGGGRGRHLSIIIGSSVGAAVLLIATILSCLI LRKGKKQREQEQFHHSLPIQSQRMALSNAPAEAAHCFTLAEIEDATNNFEKKIGSGGF GVVYYGKMKDGKEIAVKVLISNSFQGKREFTNEVTLLSRIHHRNLVQFLGYCQEDGRS MLVYEFMHNGTLKERLYGPLTQEHGINWIKRLEIAEDAAKGIEYLHTGCVPAIIHRDL KTSNILLDKHMRAKVSDFGLSKLAVDGVSHVSSIVRGTVGYLDPEYYISQQLTDKSDV YSFGVILLELMSGQEAISNESFGVNCRNIVQWAKLHIESGNIQGIIDPSLYNEYDIQS MWKIAEKALNCVQPHGHMRPSISEVLKEIQDAILIEKEGIIVREGNSDDMSRNSANSS LNPGSLDLVATDNYLSLDASIARPVAR" mRNA join(2541599..2541775,2541971..2542502,2542814..2543319, 2543521..2543653,2543770..2543841,2543966..2544034, 2544111..2544182,2544401..2544469,2545234..2545385, 2545471..2545712,2546594..2546720,2546789..2546857, 2546938..2547124,2547485..2547620,2547985..2549184) /locus_tag="TCM_022082" /product="Leucine-rich repeat protein kinase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025552001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010695t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s13430.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc705t7" CDS join(2542009..2542502,2542814..2543319,2543521..2543653, 2543770..2543841,2543966..2544034,2544111..2544182, 2544401..2544469,2545234..2545385,2545471..2545712, 2546594..2546720,2546789..2546857,2546938..2547124, 2547485..2547620,2547985..2548320) /locus_tag="TCM_022082" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG010695t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein isoform 1" /protein_id="EOY07734.1" /db_xref="Phytozome:POPTR_0006s13430.1" /db_xref="TAIR:AT2G37050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C0LGM1" /translation="MDELGLQWIADDFLTYGEIASISVLNESRKQYMTLRHFPADSRK YCYKLNVISRTRYLVRATFLYGNFDNNNVYPKFDISLGATHWSTIVISDANTIEKVEL IFLATSPTISVCLSNATTGKPFISTLELRQFNGSIYYTPFEESFYLSVSARINFGADS EAPVRYPDDPFDRIWESDSVKKANYLVDVAAGTEKVSTDKPIEIGGDERAPQKVMQTA VVGRNGSLTYRLNLDGFPGNGWAFTYFAEIEDLAPDESRKFRLVLPGQPDLSKAIVNI QENAQGKYRVYEPGYPNITLPFVLSFRFGKTSDSSRGPLLNAMEISRYLEKNDGSLDG AVMANMVELYSSVGWAQEGGDPCLPVPWSWVECNSDLQPRIVSVHLSSKNLTGNIPSD LTKLSSLVELWLDGNSLAGPIPDFTGCVDLKIIHLENNRLTGELPSSLVNLPNLKELS VQNNMLSGRVPSGLLNKDLVLNYAGNINLHEGGGRGRHLSIIIGSSVGAAVLLIATIL SCLILRKGKKQREQEQFHHSLPIQSQRMALSNAPAEAAHCFTLAEIEDATNNFEKKIG SGGFGVVYYGKMKDGKEIAVKVLISNSFQGKREFTNEVTLLSRIHHRNLVQFLGYCQE DGRSMLVYEFMHNGTLKERLYGPLTQEHGINWIKRLEIAEDAAKGIEYLHTGCVPAII HRDLKTSNILLDKHMRAKVSDFGLSKLAVDGVSHVSSIVRGTVGYLDPEYYISQQLTD KSDVYSFGVILLELMSGQEAISNESFGVNCRNIVQWAKLHIESGNIQGIIDPSLYNEY DIQSMWKIAEKALNCVQPHGHMRPSISEVLKEIQDAILIEKEGIIVREGNSDDMSRNS ANSSLNPGSLDLVATDNYLSLDASIARPVAR" mobile_element complement(2549149..2549332) /note="source:CACAO_PIF_E119_scaffold_3 4493 4682" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 2549849..2553845 /locus_tag="TCM_022083" /note="dbxref CacaoGD:Thecc1EG022083" mRNA join(2549849..2550062,2550197..2550436,2550587..2550716, 2551270..2551275,2551418..2551492,2551646..2551696, 2553418..2553845) /locus_tag="TCM_022083" /product="Nuclear transcription factor Y subunit B-10 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g33490.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043066t1" /inference="similar to AA sequence:Phytozome:Glyma03g33490.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:PASA:2:TSA:puevd3b021377t1a2; inference alignment:Newbler:10:TSA:cgbaP2_g02201t00001" mRNA join(2549849..2550062,2550197..2550436,2550587..2550716, 2551418..2551492,2551646..2551696,2553412..2553845) /locus_tag="TCM_022083" /product="Nuclear transcription factor Y subunit B-10 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g33490.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043066t3" /inference="similar to AA sequence:Phytozome:Glyma03g33490.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:PASA:2:TSA:puevd3b021377t1a6; inference alignment:Newbler:10:TSA:cgbaP2_g02201t00001" mRNA join(2549849..2550062,2550197..2550436,2550587..2550716, 2551270..2551275,2551418..2551492,2551646..2551696, 2553510..2553835) /locus_tag="TCM_022083" /product="Nuclear transcription factor Y subunit B-10 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g33490.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043066t1" /inference="similar to AA sequence:Phytozome:Glyma19g36220.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03351t00002; inference alignment:Newbler:10:TSA:cgbaP2_g02201t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13333t1" mRNA join(2549851..2550062,2550197..2550436,2550587..2550716, 2551414..2551492,2551646..2551696,2553510..2553636) /locus_tag="TCM_022083" /product="Nuclear transcription factor Y subunit B-10 isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g33490.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043066t4" /inference="similar to AA sequence:Phytozome:Glyma19g36220.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00248t00003; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc678t3; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13333t1" mRNA join(2549876..2550062,2550197..2550436,2550587..2550716, 2551270..2551275,2551418..2551492,2551646..2551696, 2553412..2553835) /locus_tag="TCM_022083" /product="Nuclear transcription factor Y subunit B-10 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g33490.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043066t1" /inference="similar to AA sequence:Phytozome:Glyma03g33490.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g02201t00001; inference alignment:Newbler:10:TSA:cgbaP2_g02201t00001" CDS join(2549899..2550062,2550197..2550436,2550587..2550716, 2551270..2551275,2551418..2551492,2551646..2551696, 2553510..2553548) /locus_tag="TCM_022083" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG043066t1" /codon_start=1 /product="Nuclear transcription factor Y subunit B-10 isoform 4" /protein_id="EOY07741.1" /db_xref="Phytozome:Glyma19g36220.1" /db_xref="TAIR:AT2G37060.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q67XJ2" /translation="MKRDERTVLINLILSSQSSPLSSLLQRPIPSLSSPRNPISLSPA LFFVFSFFPPRVFAMADAPAAPAPVSPGGGSHESGEQSPRSNVREQDRYLPIANISRI MKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL GFEDYIDPLKNYLTRYREMEGDTKGSAKGGDASAKKDVQPSPNPQLIHQGSFSQGVNY GNSQCRNKCYGYAHPM" CDS join(2549899..2550062,2550197..2550436,2550587..2550716, 2551270..2551275,2551418..2551492,2551646..2551696, 2553412..2553453) /locus_tag="TCM_022083" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG043066t1" /codon_start=1 /product="Nuclear transcription factor Y subunit B-10 isoform 1" /protein_id="EOY07738.1" /db_xref="Phytozome:Glyma03g33490.1" /db_xref="TAIR:AT2G37060.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q67XJ2" /translation="MKRDERTVLINLILSSQSSPLSSLLQRPIPSLSSPRNPISLSPA LFFVFSFFPPRVFAMADAPAAPAPVSPGGGSHESGEQSPRSNVREQDRYLPIANISRI MKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL GFEDYIDPLKNYLTRYREMEGDTKGSAKGGDASAKKDVQPSPNPQLIHQGSFSQGVNY GNSQSQAHLMVPMQGTE" CDS join(2549899..2550062,2550197..2550436,2550587..2550716, 2551270..2551275,2551418..2551492,2551646..2551696, 2553418..2553453) /locus_tag="TCM_022083" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG043066t1" /codon_start=1 /product="Nuclear transcription factor Y subunit B-10 isoform 2" /protein_id="EOY07739.1" /db_xref="Phytozome:Glyma03g33490.1" /db_xref="TAIR:AT2G37060.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q67XJ2" /translation="MKRDERTVLINLILSSQSSPLSSLLQRPIPSLSSPRNPISLSPA LFFVFSFFPPRVFAMADAPAAPAPVSPGGGSHESGEQSPRSNVREQDRYLPIANISRI MKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL GFEDYIDPLKNYLTRYREMEGDTKGSAKGGDASAKKDVQPSPNPQLIHQGSFSQGVNY GNSQAHLMVPMQGTE" CDS join(2549899..2550062,2550197..2550436,2550587..2550716, 2551418..2551492,2551646..2551696,2553412..2553453) /locus_tag="TCM_022083" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG043066t3" /codon_start=1 /product="Nuclear transcription factor Y subunit B-10 isoform 3" /protein_id="EOY07740.1" /db_xref="Phytozome:Glyma03g33490.1" /db_xref="TAIR:AT2G37060.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q67XJ2" /translation="MKRDERTVLINLILSSQSSPLSSLLQRPIPSLSSPRNPISLSPA LFFVFSFFPPRVFAMADAPAAPAPVSPGGGSHESGEQSPRSNVREQDRYLPIANISRI MKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL GFEDYIDPLKNYLTRYREGDTKGSAKGGDASAKKDVQPSPNPQLIHQGSFSQGVNYGN SQSQAHLMVPMQGTE" CDS join(2549899..2550062,2550197..2550436,2550587..2550716, 2551414..2551422) /locus_tag="TCM_022083" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG043066t4" /codon_start=1 /product="Nuclear transcription factor Y subunit B-10 isoform 5" /protein_id="EOY07742.1" /db_xref="Phytozome:Glyma19g36220.1" /db_xref="TAIR:AT2G37060.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1W9Y2" /translation="MKRDERTVLINLILSSQSSPLSSLLQRPIPSLSSPRNPISLSPA LFFVFSFFPPRVFAMADAPAAPAPVSPGGGSHESGEQSPRSNVREQDRYLPIANISRI MKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL GFEDYIDPLKNYLTRYREIG" gene 2554831..2563994 /locus_tag="TCM_022084" /note="dbxref CacaoGD:Thecc1EG022084" mRNA join(2554831..2555336,2555797..2556504,2556601..2556711, 2556797..2556913,2557021..2557179,2557275..2557436, 2557743..2557895,2557979..2558100,2558197..2559337, 2559474..2559569,2559740..2560987,2561099..2561329, 2561423..2561527,2562565..2562645,2562732..2562800, 2562920..2563048,2563168..2563251,2563342..2563994) /locus_tag="TCM_022084" /product="Ubiquitin protein ligase E3a, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s13410.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s13410.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1800t2" mRNA join(2554831..2555273,2555797..2556504,2556601..2556711, 2556797..2556913,2557021..2557179,2557275..2557436, 2557743..2557895,2557979..2558100,2558197..2559337, 2559474..2559569,2559740..2560987,2561099..2561329, 2561423..2561527,2562565..2562645,2562732..2562800, 2562920..2563048,2563168..2563251,2563342..2563994) /locus_tag="TCM_022084" /product="Ubiquitin protein ligase E3a, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s13410.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s13410.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:PASA:2:TSA:puevd3b021378t1a2; alternateUTRof:Thecc1EG022084t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1800t2" mRNA join(2555085..2555273,2555797..2556504,2556601..2556711, 2556797..2556913,2557021..2557179,2557275..2557436, 2557743..2557895,2557979..2558100,2558197..2559337, 2559474..2559569,2559740..2560987,2561099..2561329, 2561423..2561527,2562565..2562645,2562732..2562800, 2562920..2563048,2563166..2563251,2563342..2563819) /locus_tag="TCM_022084" /product="Ubiquitin protein ligase E3a, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s13410.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s13410.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1800t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1800t2" mRNA join(2555138..2555273,2555797..2556504,2556601..2556711, 2556797..2556913,2557021..2557179,2557275..2557438, 2557976..2558100,2558197..2559337,2559474..2559569, 2559740..2560987,2561099..2561329,2561423..2561527, 2562565..2562645,2562732..2562800,2562920..2563048, 2563168..2563251,2563342..>2563370) /locus_tag="TCM_022084" /product="Ubiquitin protein ligase E3a, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s13410.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s13410.1" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc152t15; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1800t2" CDS join(2555863..2556504,2556601..2556711,2556797..2556913, 2557021..2557179,2557275..2557436,2557743..2557895, 2557979..2558100,2558197..2559337,2559474..2559569, 2559740..2560987,2561099..2561329,2561423..2561527, 2562565..2562645,2562732..2562800,2562920..2563048, 2563168..2563251,2563342..2563407) /locus_tag="TCM_022084" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Ubiquitin protein ligase E3a, putative isoform 1" /protein_id="EOY07743.1" /db_xref="Phytozome:POPTR_0006s13410.1" /db_xref="TAIR:AT5G02880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SGR6" /translation="MGNRGQKRTETADELPADKRACSSLEFRPSSSNSSSIQTHLNSP NSTPDADMDTSSSASASSRSDGEHEKEEDSAYGSCDSEDAEQQPRHHILRDYQRRRSS SDHGKLNNILSNLNEEGNGDSGQLAALTELCEVLSFCTEDSISSLMADTLSPILVKLA KNESNANIMLLAIRSITYLSDVFPRSSGFLVRHDAVPALCQRLLAIEYVDVAEQCLQA LEKISRDQPLACLQAGAIMAVLNFIDFFSISVQRVALSTVVNICKKLPLEGPAPFVEA VPKLCDLLQHEDQQLVESVATCLIKIAERMCQSSEMLEELCKHELINQVTHLMNLNSR TTVSQPIYNGLIGLLVKLSSGSFVAFRSLYELNISSILKDLLSTYDLTHGMSSPHSVD GNCNQVHEVLKLLNELLPTSTGDLGNQLLLDKKSFLADHPDLLQKFGMDMLPMLVQVV NSGANIYVCYGCLSVISKLVFLSKSDMLVELLKTANIPSFLAGVFTRKDHHLLMLALQ IVEMILQKLSDVFLNSFIKEGVFFAIDTLLMPEKCSQVMLPVFSGFQSLFDSSQKSSA RDIRRCLCYAFDTVPSSSAPPCKLDKDSVCNLAKHIKTSYFAPELSDSEKGMTDILQN LRTFSAALSDLINMPVDDDTPAQHEEKFHSILHQIMLKLNGRERVSTFEFIESGIVKA LMHYLSNGLYLRNNVEFNGIYNHLLVLGKRFEVFAKLFLSYSDIPVEDLPLSVLIQKL QSALSSLENFPVIPSHGFKQKTSFATVPNGRCIMYPCFRVRFVRGEGETCLSDCPEDI LTVDPFSSSDAIEGYLWPKVFIKRTENGESDAEALEQMESQPIHLPSNANSSQGESSG FIDSMSADLPEMQEDEANLSQFASEEVHFRESNSGETMSLDETNMGSTAQVQQFPTES TTKMKPQCSASGNNDNEDSSPRLLLYLEGHQLDRTLTLYQAILQQLLNSENEFITWAK LWTRVYTLTYKKALESKQDDAQEHTLLEQKSSISDKNVASMQNMAFFSSLFACKLASN LDKSSPAYDILFLLKSLEGINKCSFHLMSYERIRAFAEGRIDNLDNLKVMVHSVPQNE FVSSRLTEKLEQQMRDSFTLSTGGMPSWCNQLIASCPFLFSFEAKCKYFRLAAFGPRR VQLHTTLRSNSGASNDRQSTAAGLPRKKFLVWRDRILDSATRMMDLHARHKGLLEVEY NEEVGTGLGPTLEFYTLVCHEFQKSGLGIWREDYRSIITSETLPVVDSGILINPYGLF PHPWSPTTDSCNGIQFSEVLKKFVLLGQIVAKAIQDGRVLDVPFSKAFYKIILGQDLC LYDIQSFNPELGRTLLEFQAIVDRKMHLESICVENSTLKLDLCFRNTRIEDLCLDFTL PGYPDYVLSSECNHKMVNLANLDNYIKLVVDATIHTGIARQVEAFKSGFNQVFAIKHL HIFTGEELERLLCGERDFWAFNELLEHIKFDHGYTASSPPIINLLEIIQEFEYAQRRA FLQFVTGAPRLPPGGLASLNPKLTIVRKHSSNSADTELPSVMTCANYLKLPPYSSKER MKEKLLYAITEGQGSFHLS" CDS join(2555863..2556504,2556601..2556711,2556797..2556913, 2557021..2557179,2557275..2557436,2557743..2557895, 2557979..2558100,2558197..2559337,2559474..2559569, 2559740..2560987,2561099..2561329,2561423..2561527, 2562565..2562645,2562732..2562800,2562920..2563048, 2563168..2563251,2563342..2563407) /locus_tag="TCM_022084" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Ubiquitin protein ligase E3a, putative isoform 1" /protein_id="EOY07745.1" /db_xref="Phytozome:POPTR_0006s13410.1" /db_xref="TAIR:AT5G02880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SGR6" /translation="MGNRGQKRTETADELPADKRACSSLEFRPSSSNSSSIQTHLNSP NSTPDADMDTSSSASASSRSDGEHEKEEDSAYGSCDSEDAEQQPRHHILRDYQRRRSS SDHGKLNNILSNLNEEGNGDSGQLAALTELCEVLSFCTEDSISSLMADTLSPILVKLA KNESNANIMLLAIRSITYLSDVFPRSSGFLVRHDAVPALCQRLLAIEYVDVAEQCLQA LEKISRDQPLACLQAGAIMAVLNFIDFFSISVQRVALSTVVNICKKLPLEGPAPFVEA VPKLCDLLQHEDQQLVESVATCLIKIAERMCQSSEMLEELCKHELINQVTHLMNLNSR TTVSQPIYNGLIGLLVKLSSGSFVAFRSLYELNISSILKDLLSTYDLTHGMSSPHSVD GNCNQVHEVLKLLNELLPTSTGDLGNQLLLDKKSFLADHPDLLQKFGMDMLPMLVQVV NSGANIYVCYGCLSVISKLVFLSKSDMLVELLKTANIPSFLAGVFTRKDHHLLMLALQ IVEMILQKLSDVFLNSFIKEGVFFAIDTLLMPEKCSQVMLPVFSGFQSLFDSSQKSSA RDIRRCLCYAFDTVPSSSAPPCKLDKDSVCNLAKHIKTSYFAPELSDSEKGMTDILQN LRTFSAALSDLINMPVDDDTPAQHEEKFHSILHQIMLKLNGRERVSTFEFIESGIVKA LMHYLSNGLYLRNNVEFNGIYNHLLVLGKRFEVFAKLFLSYSDIPVEDLPLSVLIQKL QSALSSLENFPVIPSHGFKQKTSFATVPNGRCIMYPCFRVRFVRGEGETCLSDCPEDI LTVDPFSSSDAIEGYLWPKVFIKRTENGESDAEALEQMESQPIHLPSNANSSQGESSG FIDSMSADLPEMQEDEANLSQFASEEVHFRESNSGETMSLDETNMGSTAQVQQFPTES TTKMKPQCSASGNNDNEDSSPRLLLYLEGHQLDRTLTLYQAILQQLLNSENEFITWAK LWTRVYTLTYKKALESKQDDAQEHTLLEQKSSISDKNVASMQNMAFFSSLFACKLASN LDKSSPAYDILFLLKSLEGINKCSFHLMSYERIRAFAEGRIDNLDNLKVMVHSVPQNE FVSSRLTEKLEQQMRDSFTLSTGGMPSWCNQLIASCPFLFSFEAKCKYFRLAAFGPRR VQLHTTLRSNSGASNDRQSTAAGLPRKKFLVWRDRILDSATRMMDLHARHKGLLEVEY NEEVGTGLGPTLEFYTLVCHEFQKSGLGIWREDYRSIITSETLPVVDSGILINPYGLF PHPWSPTTDSCNGIQFSEVLKKFVLLGQIVAKAIQDGRVLDVPFSKAFYKIILGQDLC LYDIQSFNPELGRTLLEFQAIVDRKMHLESICVENSTLKLDLCFRNTRIEDLCLDFTL PGYPDYVLSSECNHKMVNLANLDNYIKLVVDATIHTGIARQVEAFKSGFNQVFAIKHL HIFTGEELERLLCGERDFWAFNELLEHIKFDHGYTASSPPIINLLEIIQEFEYAQRRA FLQFVTGAPRLPPGGLASLNPKLTIVRKHSSNSADTELPSVMTCANYLKLPPYSSKER MKEKLLYAITEGQGSFHLS" CDS join(2555863..2556504,2556601..2556711,2556797..2556913, 2557021..2557179,2557275..2557436,2557743..2557895, 2557979..2558100,2558197..2559337,2559474..2559569, 2559740..2560987,2561099..2561329,2561423..2561527, 2562565..2562645,2562732..2562800,2562920..2563048, 2563166..2563210) /locus_tag="TCM_022084" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Ubiquitin protein ligase E3a, putative isoform 2" /protein_id="EOY07744.1" /db_xref="Phytozome:POPTR_0006s13410.1" /db_xref="TAIR:AT5G02880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SGR6" /translation="MGNRGQKRTETADELPADKRACSSLEFRPSSSNSSSIQTHLNSP NSTPDADMDTSSSASASSRSDGEHEKEEDSAYGSCDSEDAEQQPRHHILRDYQRRRSS SDHGKLNNILSNLNEEGNGDSGQLAALTELCEVLSFCTEDSISSLMADTLSPILVKLA KNESNANIMLLAIRSITYLSDVFPRSSGFLVRHDAVPALCQRLLAIEYVDVAEQCLQA LEKISRDQPLACLQAGAIMAVLNFIDFFSISVQRVALSTVVNICKKLPLEGPAPFVEA VPKLCDLLQHEDQQLVESVATCLIKIAERMCQSSEMLEELCKHELINQVTHLMNLNSR TTVSQPIYNGLIGLLVKLSSGSFVAFRSLYELNISSILKDLLSTYDLTHGMSSPHSVD GNCNQVHEVLKLLNELLPTSTGDLGNQLLLDKKSFLADHPDLLQKFGMDMLPMLVQVV NSGANIYVCYGCLSVISKLVFLSKSDMLVELLKTANIPSFLAGVFTRKDHHLLMLALQ IVEMILQKLSDVFLNSFIKEGVFFAIDTLLMPEKCSQVMLPVFSGFQSLFDSSQKSSA RDIRRCLCYAFDTVPSSSAPPCKLDKDSVCNLAKHIKTSYFAPELSDSEKGMTDILQN LRTFSAALSDLINMPVDDDTPAQHEEKFHSILHQIMLKLNGRERVSTFEFIESGIVKA LMHYLSNGLYLRNNVEFNGIYNHLLVLGKRFEVFAKLFLSYSDIPVEDLPLSVLIQKL QSALSSLENFPVIPSHGFKQKTSFATVPNGRCIMYPCFRVRFVRGEGETCLSDCPEDI LTVDPFSSSDAIEGYLWPKVFIKRTENGESDAEALEQMESQPIHLPSNANSSQGESSG FIDSMSADLPEMQEDEANLSQFASEEVHFRESNSGETMSLDETNMGSTAQVQQFPTES TTKMKPQCSASGNNDNEDSSPRLLLYLEGHQLDRTLTLYQAILQQLLNSENEFITWAK LWTRVYTLTYKKALESKQDDAQEHTLLEQKSSISDKNVASMQNMAFFSSLFACKLASN LDKSSPAYDILFLLKSLEGINKCSFHLMSYERIRAFAEGRIDNLDNLKVMVHSVPQNE FVSSRLTEKLEQQMRDSFTLSTGGMPSWCNQLIASCPFLFSFEAKCKYFRLAAFGPRR VQLHTTLRSNSGASNDRQSTAAGLPRKKFLVWRDRILDSATRMMDLHARHKGLLEVEY NEEVGTGLGPTLEFYTLVCHEFQKSGLGIWREDYRSIITSETLPVVDSGILINPYGLF PHPWSPTTDSCNGIQFSEVLKKFVLLGQIVAKAIQDGRVLDVPFSKAFYKIILGQDLC LYDIQSFNPELGRTLLEFQAIVDRKMHLESICVENSTLKLDLCFRNTRIEDLCLDFTL PGYPDYVLSSECNHKMVNLANLDNYIKLVVDATIHTGIARQVEAFKSGFNQVFAIKHL HIFTGEELERLLCGERDFWAFNELLEHIKFDHGYTASSPPIINLLEIIQEFEYAQRRA FLQFVTGAPRLPPGGLASLNPKLTIVRKSIVAIVLIQSCPVL" CDS join(2558063..2558100,2558197..2559337,2559474..2559569, 2559740..2560987,2561099..2561329,2561423..2561527, 2562565..2562645,2562732..2562800,2562920..2563048, 2563168..2563251,2563342..>2563368) /locus_tag="TCM_022084" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Ubiquitin protein ligase E3a, putative isoform 4" /protein_id="EOY07746.1" /db_xref="Phytozome:POPTR_0006s13410.1" /db_xref="TAIR:AT5G02880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SGR6" /translation="MLVELLKTANIPSFLAGVFTRKDHHLLMLALQIVEMILQKLSDV FLNSFIKEGVFFAIDTLLMPEKCSQVMLPVFSGFQSLFDSSQKSSARDIRRCLCYAFD TVPSSSAPPCKLDKDSVCNLAKHIKTSYFAPELSDSEKGMTDILQNLRTFSAALSDLI NMPVDDDTPAQHEEKFHSILHQIMLKLNGRERVSTFEFIESGIVKALMHYLSNGLYLR NNVEFNGIYNHLLVLGKRFEVFAKLFLSYSDIPVEDLPLSVLIQKLQSALSSLENFPV IPSHGFKQKTSFATVPNGRCIMYPCFRVRFVRGEGETCLSDCPEDILTVDPFSSSDAI EGYLWPKVFIKRTENGESDAEALEQMESQPIHLPSNANSSQGESSGFIDSMSADLPEM QEDEANLSQFASEEVHFRESNSGETMSLDETNMGSTAQVQQFPTESTTKMKPQCSASG NNDNEDSSPRLLLYLEGHQLDRTLTLYQAILQQLLNSENEFITWAKLWTRVYTLTYKK ALESKQDDAQEHTLLEQKSSISDKNVASMQNMAFFSSLFACKLASNLDKSSPAYDILF LLKSLEGINKCSFHLMSYERIRAFAEGRIDNLDNLKVMVHSVPQNEFVSSRLTEKLEQ QMRDSFTLSTGGMPSWCNQLIASCPFLFSFEAKCKYFRLAAFGPRRVQLHTTLRSNSG ASNDRQSTAAGLPRKKFLVWRDRILDSATRMMDLHARHKGLLEVEYNEEVGTGLGPTL EFYTLVCHEFQKSGLGIWREDYRSIITSETLPVVDSGILINPYGLFPHPWSPTTDSCN GIQFSEVLKKFVLLGQIVAKAIQDGRVLDVPFSKAFYKIILGQDLCLYDIQSFNPELG RTLLEFQAIVDRKMHLESICVENSTLKLDLCFRNTRIEDLCLDFTLPGYPDYVLSSEC NHKMVNLANLDNYIKLVVDATIHTGIARQVEAFKSGFNQVFAIKHLHIFTGEELERLL CGERDFWAFNELLEHIKFDHGYTASSPPIINLLEIIQEFEYAQRRAFLQFVTGAPRLP PGGLASLNPKLTIVRKHSSNSADTELPSVMTCANYLKLPPYSSKERMKEKLLY" mobile_element 2558600..2558671 /note="source:CACAO_on_E279_scaffold_9 7197 7269" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 2564041..2566896 /locus_tag="TCM_022085" /note="dbxref CacaoGD:Thecc1EG022085" mRNA 2564041..2566896 /locus_tag="TCM_022085" /product="Tetratricopeptide repeat (TPR)-like superfamily protein" /inference="alignment:exonerate- protein:2:ricco:29805.m001488" /inference="similar to AA sequence:frave:gene09580" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04394t00001" CDS 2564307..2566583 /locus_tag="TCM_022085" /note="dbxref frave:gene09580" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein" /protein_id="EOY07747.1" /db_xref="TAIR:AT3G09650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SF38" /translation="MNIPRPSPCSSASSPTSSSSSSSFPSTLHWLSPPPPSATTATTT SKPARLCRLEATAHQQTQPTADFSLSTDRKTNNDQTLLSLLRQRKTEQAWDHYSQSPH LPTPTCLSRLVAQLSYQTTPLSLTRARSIITRLRNERQLHRLDANSLGLLASASAKSG HTLYASSLIKSMLRSGYLPHVKAWSAVVSRLSTESPSESINLFDSVTRRVRRFADPTI VADSKPDTAAYNAVLNACANLGDKSKFLKLFEEMSEWGCEPDVLTYNVMIKLLARADR KDLLVFVLERIVEKRIRLCMTTLHSLVAAYVGFDDLETAERIVQAMREQRNDLCKILR DANLEDLNQAEEDEEEEEEEENRKDLSQNEKDDIVFEKLLPNSIKPSSEARLLPKVYA PNSRIYTTLMKGYMKAGRVSDTVRMLEAMRHQGDKASHPDHVTYTTVVSAFVKAGLMD RAREVLAEMTRIGVPANWITYNILLKGYCQQLQIDKAKELLREMADDAEIKPDVVSYN ILIDGCILIDDSAGALAFFNEMRERGIAPTKISYTTLMKAFALSGQPKLANKVFDEML RDPRVKVDLVAWNMLVEGYSRLGLVEEAKKIIQRMKEKGFYPNVATYGSLANGISLAR KPGEALLLWKEIKERCKMKKEGDNPCSDSSSPPPLKPDEGLLDTLADICVRAAFFKKA LEIVACMEENGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRIERKRAAEAFKFWL GLPNSYYGSEWHFEPIDR" gene complement(2566641..2573459) /locus_tag="TCM_022086" /note="dbxref CacaoGD:Thecc1EG022086" mRNA complement(join(2566641..2567082,2567523..2567636, 2567722..2567892,2568243..2568417,2568512..2568668, 2568776..2568827,2569027..2569156,2569437..2569555, 2569631..2569701,2569906..2570058,2570241..2570336, 2570786..2571049,2571387..2571550,2571683..2571905, 2571999..2572113,2572217..2572357,2572672..2573459)) /locus_tag="TCM_022086" /product="Minichromosome maintenance 8" /inference="alignment:exonerate-protein:2:frave:gene09581" /inference="similar to AA sequence:ricco:29805.m001487" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1790t1" CDS complement(join(2567032..2567082,2567523..2567636, 2567722..2567892,2568243..2568417,2568512..2568668, 2568776..2568827,2569027..2569156,2569437..2569555, 2569631..2569701,2569906..2570058,2570241..2570336, 2570786..2571049,2571387..2571550,2571683..2571905, 2571999..2572113,2572217..2572357,2572672..2573043)) /locus_tag="TCM_022086" /note="dbxref ricco:29805.m001487" /codon_start=1 /product="Minichromosome maintenance 8" /protein_id="EOY07748.1" /db_xref="TAIR:AT3G09660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SF37" /translation="MVGLNKSVHKLPRQSKCPIIKPGKIFFPSRNSPAKKVADKQIKS RRKFDEHSVAKFEITFTTVEMDGAQGESANDKYGSINTSNIGSIVPVYITENEYSKDE EKLIFELIRFFSAPPGQDLAHQVKDDSSSFCLPLDFQKFRKLCDIEEFYAKLADKPKI ALSCMSAAVHQVLLSSSDFSLEEGMKINIRLHNYPESVIVLKNLKAAYIDKLVSVHGT VVKASTVKPLVIKMNFACEKCTTEIPRMFPDGKFSPPSTCTLHGCKSRTFKPIRSSAQ AIDFQKIRLQELLKFEEHEEGRVPRTVECELTEDLVDLCIPGDVVTVTGIIRVINNYM DIGGGKSKSRNQGFYYLYIEAVSIKNSKSQSVPEDLQDSDSNARATELVDLFSFSPRD LEFIVKFSEEHGSYVFRQILQSICPSIYGHELVKAGITLALFGGVRKHSMDRNKVPVR GDIHVIVVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTNAGLTVAVVKDTMTSDYAFE AGAMVLADRGLCCIDEFDKMTAEHQALLEAMEQQCVSVAKAGLVASLSARTSVLAAAN PVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELQDKRLSEHIMSLHAGYGEN SPALKKPRVASQNVEGIGMSAKGSSLVSRLRLGPKKDADFVPLPGPLLRKYIAYARTY VSPRMSKPAAEILQKFYLQLRDRSTSGDGTPITARQLESLVRLAEARARVELREEITT QDARDAVEIMKESLYDKYVNEHGFVDFGRSGGMSQQKEAKRFLSALNKQSELQQKDCF SISEIYSLADRIGLRVADIDTLVDNLNSVGYLLKKGPKTYQVLSSSYSRSQPSRSRC" mobile_element 2573910..2573964 /note="source:MITE_Unknow_2_17 478 532" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(2575103..2575228) /note="source:scaffold_9_CACTA_0946 17859 17998" /mobile_element_type="transposon:TIR/CACTA" gene 2575574..2579550 /locus_tag="TCM_022087" /note="dbxref CacaoGD:Thecc1EG022087" mRNA join(2575574..2575751,2575907..2578835,2579184..2579547) /locus_tag="TCM_022087" /product="Tudor/PWWP/MBT superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s13390.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s13390.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1804t1" mRNA join(2575630..2575751,2575907..2578815,2579184..2579550) /locus_tag="TCM_022087" /product="Tudor/PWWP/MBT superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s13390.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s13390.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1219t4; alternateUTRof:Thecc1EG022087t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1804t1; inference alignment:Newbler:10:TSA:cgbaP1_g00746t00002" mRNA join(2575630..2575741,2575907..2579130) /locus_tag="TCM_022087" /product="Tudor/PWWP/MBT superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s13390.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s13390.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1219t6; alternateUTRof:Thecc1EG022087t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1804t1; inference alignment:Newbler:10:TSA:cgbaP1_g00746t00002" mRNA join(2575839..2578023,2578122..2578766) /locus_tag="TCM_022087" /product="Tudor/PWWP/MBT superfamily protein, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s13390.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s13390.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1226t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1804t1" CDS 2575916..2578780 /locus_tag="TCM_022087" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Tudor/PWWP/MBT superfamily protein, putative isoform 1" /protein_id="EOY07749.1" /db_xref="Phytozome:POPTR_0006s13390.1" /db_xref="TAIR:AT5G02950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MT85" /translation="MSKKIPEEIDLNCDALPVDRENEDNDVNDDEPASGAGTSSTKTL TERTVDGVGVFGKDNESAGGIDELGEESKMESVKHKGIDLEADIGSLGEEVDGKVSAR FSSGGDSLMEVDGGSRGRGDGESVSIEDKKPVVAEQIAMRSSGGVAEDLNVSVCPSED TLIEGNSVRIQLSLFADNTIQSGIAHDLGSDDAKPLSSGLGPGNSLPYGEQNVSSKEG SSGRLEGRDMEIDTPDDTNERNLITAIQDKGDRVIQNAEKGSNLLNDAVDLNSCTSTD EDVSDDADAKPEKPEEPEFCVSDLVWGKVRSHPWWPGQIFDRSAATAKAKKYFKKDCY LIAYFGDQTFAWNEASRIKPFRPHFSHMEKQNNMEEFHYAIDCALDEVSRRVEFGLAC SCICKEAYAEVQAQIIVNAGIREESSRKDGGDRFSGVASFDPFELVERIKALAQSPSY SEVDRLQFITSQAQLLAFHRWKGYSQLPEFQNLCGLLETDVEIPLSEEVKKHCELIGG DVPSVEVDKQVLSEREKSESQDGSSQKQKKIPGDAKVSNKKEKSLSELIAERRLNMQN GKGKLTKKAGDKLISSSPAKKLKVVESVRDDSALKQNRSNASTGSVDKSLQSKQTFRV GASILRVASQLNGSSSTVSTPVLKHGDGTTKKKSAVNNESKGKNSSGKSPGKTAFQTN MSSADEMLSQLCLAATDPLKGYSFLSSMVFFFMELRNSIAMDLNSSEMSEQSSEQGTD GEIGEKSTRFEVTGKSELTSIKDTCCSDRIIQCLPEEQLAVDNHNQTTEVSPDTPSEK GFSVIESQPAAQASPNLDSEQKCTVTDENLGMEAEKRIEYSDESYTEDLYPTALILNF SDLESVPSVEDLNKIFSRYGPLVAPGAEVLKKSVRARVVFKRHADAETAFSSSGKYSI FGPSLVSYRLKRLASALPRSSPVATKQSRTDETCGDGSTT" CDS 2575916..2578780 /locus_tag="TCM_022087" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Tudor/PWWP/MBT superfamily protein, putative isoform 1" /protein_id="EOY07750.1" /db_xref="Phytozome:POPTR_0006s13390.1" /db_xref="TAIR:AT5G02950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MT85" /translation="MSKKIPEEIDLNCDALPVDRENEDNDVNDDEPASGAGTSSTKTL TERTVDGVGVFGKDNESAGGIDELGEESKMESVKHKGIDLEADIGSLGEEVDGKVSAR FSSGGDSLMEVDGGSRGRGDGESVSIEDKKPVVAEQIAMRSSGGVAEDLNVSVCPSED TLIEGNSVRIQLSLFADNTIQSGIAHDLGSDDAKPLSSGLGPGNSLPYGEQNVSSKEG SSGRLEGRDMEIDTPDDTNERNLITAIQDKGDRVIQNAEKGSNLLNDAVDLNSCTSTD EDVSDDADAKPEKPEEPEFCVSDLVWGKVRSHPWWPGQIFDRSAATAKAKKYFKKDCY LIAYFGDQTFAWNEASRIKPFRPHFSHMEKQNNMEEFHYAIDCALDEVSRRVEFGLAC SCICKEAYAEVQAQIIVNAGIREESSRKDGGDRFSGVASFDPFELVERIKALAQSPSY SEVDRLQFITSQAQLLAFHRWKGYSQLPEFQNLCGLLETDVEIPLSEEVKKHCELIGG DVPSVEVDKQVLSEREKSESQDGSSQKQKKIPGDAKVSNKKEKSLSELIAERRLNMQN GKGKLTKKAGDKLISSSPAKKLKVVESVRDDSALKQNRSNASTGSVDKSLQSKQTFRV GASILRVASQLNGSSSTVSTPVLKHGDGTTKKKSAVNNESKGKNSSGKSPGKTAFQTN MSSADEMLSQLCLAATDPLKGYSFLSSMVFFFMELRNSIAMDLNSSEMSEQSSEQGTD GEIGEKSTRFEVTGKSELTSIKDTCCSDRIIQCLPEEQLAVDNHNQTTEVSPDTPSEK GFSVIESQPAAQASPNLDSEQKCTVTDENLGMEAEKRIEYSDESYTEDLYPTALILNF SDLESVPSVEDLNKIFSRYGPLVAPGAEVLKKSVRARVVFKRHADAETAFSSSGKYSI FGPSLVSYRLKRLASALPRSSPVATKQSRTDETCGDGSTT" CDS 2575916..2578780 /locus_tag="TCM_022087" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Tudor/PWWP/MBT superfamily protein, putative isoform 1" /protein_id="EOY07751.1" /db_xref="Phytozome:POPTR_0006s13390.1" /db_xref="TAIR:AT5G02950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MT85" /translation="MSKKIPEEIDLNCDALPVDRENEDNDVNDDEPASGAGTSSTKTL TERTVDGVGVFGKDNESAGGIDELGEESKMESVKHKGIDLEADIGSLGEEVDGKVSAR FSSGGDSLMEVDGGSRGRGDGESVSIEDKKPVVAEQIAMRSSGGVAEDLNVSVCPSED TLIEGNSVRIQLSLFADNTIQSGIAHDLGSDDAKPLSSGLGPGNSLPYGEQNVSSKEG SSGRLEGRDMEIDTPDDTNERNLITAIQDKGDRVIQNAEKGSNLLNDAVDLNSCTSTD EDVSDDADAKPEKPEEPEFCVSDLVWGKVRSHPWWPGQIFDRSAATAKAKKYFKKDCY LIAYFGDQTFAWNEASRIKPFRPHFSHMEKQNNMEEFHYAIDCALDEVSRRVEFGLAC SCICKEAYAEVQAQIIVNAGIREESSRKDGGDRFSGVASFDPFELVERIKALAQSPSY SEVDRLQFITSQAQLLAFHRWKGYSQLPEFQNLCGLLETDVEIPLSEEVKKHCELIGG DVPSVEVDKQVLSEREKSESQDGSSQKQKKIPGDAKVSNKKEKSLSELIAERRLNMQN GKGKLTKKAGDKLISSSPAKKLKVVESVRDDSALKQNRSNASTGSVDKSLQSKQTFRV GASILRVASQLNGSSSTVSTPVLKHGDGTTKKKSAVNNESKGKNSSGKSPGKTAFQTN MSSADEMLSQLCLAATDPLKGYSFLSSMVFFFMELRNSIAMDLNSSEMSEQSSEQGTD GEIGEKSTRFEVTGKSELTSIKDTCCSDRIIQCLPEEQLAVDNHNQTTEVSPDTPSEK GFSVIESQPAAQASPNLDSEQKCTVTDENLGMEAEKRIEYSDESYTEDLYPTALILNF SDLESVPSVEDLNKIFSRYGPLVAPGAEVLKKSVRARVVFKRHADAETAFSSSGKYSI FGPSLVSYRLKRLASALPRSSPVATKQSRTDETCGDGSTT" CDS join(2575916..2578023,2578122..2578134) /locus_tag="TCM_022087" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Tudor/PWWP/MBT superfamily protein, putative isoform 4" /protein_id="EOY07752.1" /db_xref="Phytozome:POPTR_0006s13390.1" /db_xref="TAIR:AT3G09670.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MT85" /translation="MSKKIPEEIDLNCDALPVDRENEDNDVNDDEPASGAGTSSTKTL TERTVDGVGVFGKDNESAGGIDELGEESKMESVKHKGIDLEADIGSLGEEVDGKVSAR FSSGGDSLMEVDGGSRGRGDGESVSIEDKKPVVAEQIAMRSSGGVAEDLNVSVCPSED TLIEGNSVRIQLSLFADNTIQSGIAHDLGSDDAKPLSSGLGPGNSLPYGEQNVSSKEG SSGRLEGRDMEIDTPDDTNERNLITAIQDKGDRVIQNAEKGSNLLNDAVDLNSCTSTD EDVSDDADAKPEKPEEPEFCVSDLVWGKVRSHPWWPGQIFDRSAATAKAKKYFKKDCY LIAYFGDQTFAWNEASRIKPFRPHFSHMEKQNNMEEFHYAIDCALDEVSRRVEFGLAC SCICKEAYAEVQAQIIVNAGIREESSRKDGGDRFSGVASFDPFELVERIKALAQSPSY SEVDRLQFITSQAQLLAFHRWKGYSQLPEFQNLCGLLETDVEIPLSEEVKKHCELIGG DVPSVEVDKQVLSEREKSESQDGSSQKQKKIPGDAKVSNKKEKSLSELIAERRLNMQN GKGKLTKKAGDKLISSSPAKKLKVVESVRDDSALKQNRSNASTGSVDKSLQSKQTFRV GASILRVASQLNGSSSTVSTPVLKHGDGTTKKKSAVNNESKGKNSSGKSPGKTAFQTN MSSADEMLSQLCLAATDPLKGTRN" gene 2579595..2586097 /locus_tag="TCM_022088" /note="dbxref CacaoGD:Thecc1EG022088" mRNA join(2579595..2580307,2580848..2581042,2581126..2581392, 2581865..2581910,2583123..2583183,2583262..2583357, 2583635..2583785,2583889..2584562,2584801..2586097) /locus_tag="TCM_022088" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s13380.1" /inference="similar to AA sequence:ricco:29805.m001486" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1343t1" CDS join(2580184..2580307,2580848..2581042,2581126..2581392, 2581865..2581910,2583123..2583183,2583262..2583357, 2583635..2583785,2583889..2584562,2584801..2585736) /locus_tag="TCM_022088" /note="dbxref ricco:29805.m001486" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07753.1" /db_xref="TAIR:AT3G53320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MT86" /translation="MGDSEKQSDFDIKGLSLIDVSSEDDCLINSPLCDPINPQSSGKR SGTKSVRFAMDPDSAEISLGSLEENGKLEEPPDSLEQDKTSKNGKYNLRKSLAWDSAF FTSAGVLDPEELSSMIGGNEKGEIHTLPGIREDVNKSCDSLTTLDSETLTLESLEADL FEDIRASIQKSNKASNIANSSGKKESKTADTPTVSHNQLFKILATNILKEFALFSFSF PDSKKVELATQDKMKQKAAPKKPNIGVKDSGKTMKQVSVRPQISQSFARSGEPTSSLH KPPKVLSRVVPLSTTPIKRVSLGSKNVKMEKDAKSVTGRGNTVSKTPALGGLRNIVPR PTLSSKSSSCSPVSIKTELTTSCSSLESCASASSGRITKSSLNSIKRKNDSGRVSPSS SGCTISTPSKIASKGKNQAGSSRLSTFSKSSTKLSSSISPASSISEWSSDSSSSTSTV NQRSNIVRPSLGIGSRKGLGTNRDAHQVLDSQDHPTGQCSMGHGAEVTGSLDESVNKV SAGTSGLLHPASMKPSGLRMPSPKLGFFDGVRSSGRTPNGSMLSHPGVPNGLPKIGAK STSPSGSLNKAKIGKLQPVRTLTAIQSPKVDVKQTSSAVKSRSSLTIQKSPNAAAKVS SALRNPKSSPGISTKFQNKSSLKTGRESYSKAQGIGTAEKIVSPGFPKQVVGLGGKDG ARIKDTKIVPLDGVPETTDNLTSKSDDQNTIPLKVAAENETYSHLYLKTDTLILYNTK KKEEAHIEDQIAGTAEGYLSSDTQKEPNADSHLAHGDKKVENCLSKPIRTSPSPMTSE IMAGSRRPFSVKDSFYNMDTHTPLAVTPGSAVGVDKITTLQSPESILPEYS" gene complement(2586475..2588006) /locus_tag="TCM_022089" /note="dbxref CacaoGD:Thecc1EG022089" mRNA complement(join(2586475..2586829,2586929..2587055, 2587141..2587296,2587900..2588006)) /locus_tag="TCM_022089" /product="Ribosomal protein S12/S23 family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s13370.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043077t1" /inference="similar to AA sequence:Phytozome:GSVIVT01025626001" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g03993t00001" CDS complement(join(2586689..2586829,2586929..2587055, 2587141..2587296,2587900..2587904)) /locus_tag="TCM_022089" /note="paralog of Thecc1EG043077t1" /codon_start=1 /product="Ribosomal protein S12/S23 family protein" /protein_id="EOY07754.1" /db_xref="Phytozome:GSVIVT01025626001" /db_xref="TAIR:AT5G02960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P62266" /translation="MGKTRGMGAGRKLRTHRRRQRWADKAYKKSNLGNEWKKPFAGSS HAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIA GFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS" gene complement(2588242..2594368) /locus_tag="TCM_022090" /note="dbxref CacaoGD:Thecc1EG022090" mRNA complement(join(2588242..2590520,2590728..2590908, 2591800..2591901,2593334..2593459)) /locus_tag="TCM_022090" /product="ROP interactive partner 3 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29805.m001484" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041102t3" /inference="similar to AA sequence:ricco:29805.m001484" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04479t00001" mRNA complement(join(2588397..2590520,2590728..2590883, 2591800..>2591897)) /locus_tag="TCM_022090" /product="ROP interactive partner 3 isoform 3" /inference="alignment:exonerate- protein:2:ricco:29805.m001484" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041102t5" /inference="similar to AA sequence:ricco:29805.m001484" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc338t10; inference alignment:Newbler:10:TSA:cgbaB_g04479t00001" CDS complement(join(2588862..2590520,2590728..2590883, 2591800..>2591895)) /locus_tag="TCM_022090" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29805.m001484; paralog of Thecc1EG041102t5" /codon_start=1 /product="ROP interactive partner 3 isoform 3" /protein_id="EOY07757.1" /db_xref="TAIR:AT2G37080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IJ05" /translation="WVRWGLKQRTYILPFYHFNSRGYKNHADAKSKRKSPATPRTARQ LKTPGPDSDTVSSPNPASKTPKDRSPKVTARKALRSPVSEKQRPSKVSELESQLTQLQ DDLKKTKDQLTASESWKRRAIQEAEEAKKQLSAMSAKLEESEQQLMEISASEDDRVEE LRKISQDRDRAWQSELEAVQNQHSMDSAALASAMNEIQKLKVQLEKAYESEAIQTKHA ESAHAEIQNLRIELTETLSLVEKLKSELTDCRESEAQALEVVSKTQMQPETANETIEK LRSDATKATEAYNTLSLELEQSKARVKSLEGLVSKLQAELVGSSSKISKDPKDDGLPR QNGENEEIQHLKTELNFAKLEVGQLRSALDAAEVRYQEEYIRSTLQIRSAYEQVENIR TQSCQREAELGAELKRTKTDVEELRANLMDKETELQSISEENEGLNLKIEKNQSDERE SEHATELKKIEAESTELKANLTAKETELHSVTEQNEMLKMEIKKSEMEGSKVRDESVV LLAAARAAEREALMKLSYVTEEADKSSRRAARVTEQLDAAQATNTEMEAELRRLKVQS DQWRKAAEAAAAMLSTGNNGKHADRTISLDSNYNPIMGSPNSEDMDDDSPKKKNGNML KKIGGLWKKGQK" CDS complement(join(2588862..2590520,2590728..2590908, 2591800..2591819)) /locus_tag="TCM_022090" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29805.m001484; paralog of Thecc1EG041102t3" /codon_start=1 /product="ROP interactive partner 3 isoform 1" /protein_id="EOY07755.1" /db_xref="TAIR:AT2G37080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IJ05" /translation="MQTPKARTSSLEVPQRKSPATPRTARQLKTPGPDSDTVSSPNPA SKTPKDRSPKVTARKALRSPVSEKQRPSKVSELESQLTQLQDDLKKTKDQLTASESWK RRAIQEAEEAKKQLSAMSAKLEESEQQLMEISASEDDRVEELRKISQDRDRAWQSELE AVQNQHSMDSAALASAMNEIQKLKVQLEKAYESEAIQTKHAESAHAEIQNLRIELTET LSLVEKLKSELTDCRESEAQALEVVSKTQMQPETANETIEKLRSDATKATEAYNTLSL ELEQSKARVKSLEGLVSKLQAELVGSSSKISKDPKDDGLPRQNGENEEIQHLKTELNF AKLEVGQLRSALDAAEVRYQEEYIRSTLQIRSAYEQVENIRTQSCQREAELGAELKRT KTDVEELRANLMDKETELQSISEENEGLNLKIEKNQSDERESEHATELKKIEAESTEL KANLTAKETELHSVTEQNEMLKMEIKKSEMEGSKVRDESVVLLAAARAAEREALMKLS YVTEEADKSSRRAARVTEQLDAAQATNTEMEAELRRLKVQSDQWRKAAEAAAAMLSTG NNGKHADRTISLDSNYNPIMGSPNSEDMDDDSPKKKNGNMLKKIGGLWKKGQK" mRNA complement(join(<2588887..2590514,2590728..2590908, 2591800..2591901,2593334..2594368)) /locus_tag="TCM_022090" /product="ROP interactive partner 3 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29805.m001484" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041102t1" /inference="similar to AA sequence:ricco:29805.m001484" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc259t6; inference alignment:Newbler:10:TSA:cgbaB_g04479t00001" CDS complement(join(<2588889..2590514,2590728..2590908, 2591800..2591819)) /locus_tag="TCM_022090" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29805.m001484; paralog of Thecc1EG041102t1" /codon_start=1 /product="ROP interactive partner 3 isoform 2" /protein_id="EOY07756.1" /db_xref="TAIR:AT2G37080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IJ05" /translation="MQTPKARTSSLEVPQRKSPATPRTARQLKTPGPDSDTVSSPNPA SKTPKDRSPKVTARKALRSPVSERPSKVSELESQLTQLQDDLKKTKDQLTASESWKRR AIQEAEEAKKQLSAMSAKLEESEQQLMEISASEDDRVEELRKISQDRDRAWQSELEAV QNQHSMDSAALASAMNEIQKLKVQLEKAYESEAIQTKHAESAHAEIQNLRIELTETLS LVEKLKSELTDCRESEAQALEVVSKTQMQPETANETIEKLRSDATKATEAYNTLSLEL EQSKARVKSLEGLVSKLQAELVGSSSKISKDPKDDGLPRQNGENEEIQHLKTELNFAK LEVGQLRSALDAAEVRYQEEYIRSTLQIRSAYEQVENIRTQSCQREAELGAELKRTKT DVEELRANLMDKETELQSISEENEGLNLKIEKNQSDERESEHATELKKIEAESTELKA NLTAKETELHSVTEQNEMLKMEIKKSEMEGSKVRDESVVLLAAARAAEREALMKLSYV TEEADKSSRRAARVTEQLDAAQATNTEMEAELRRLKVQSDQWRKAAEAAAAMLSTGNN GKHADRTISLDSNYNPIMGSPNSEDMDDDSPKKKNGNMLKKIG" misc_feature complement(join(2591831..2591901,2592197..2592894)) /locus_tag="TCM_022090" /note="Gene fragment of Thecc1EG022090t1; dbxref gnl|CacaoGD|Thecc1EG022090t1; quality class is mediumpartial-partof is thecc1eg022090t1, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2170t1; dbxref CacaoGD:Thecc1EG022091t1" gene 2597014..2598318 /locus_tag="TCM_022093" /note="dbxref CacaoGD:Thecc1EG022093" mRNA 2597014..2598318 /locus_tag="TCM_022093" /product="Zinc finger protein-related, putative" /inference="alignment:exonerate-protein:2:frave:gene09630" /inference="similar to AA sequence:frave:gene09630" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.39 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2398t1" CDS 2597143..2598087 /locus_tag="TCM_022093" /note="dbxref frave:gene09630" /codon_start=1 /product="Zinc finger protein-related, putative" /protein_id="EOY07758.1" /db_xref="TAIR:AT5G54630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HQZ4" /translation="MVFLEGKKEMVERCLMAASMAALVCHPNATIKCFRPKSKTTSSQ RKKSRRENKQPSKSTNQNDLGANSSLSRTSVAFNMNMGSSLSTLPTSRSGGASYVVSN LVEKESSYGVVETIFRSGWDNKIGLKIEKVLKINHSVDALNKFEEYREIVKSKSTNVS ASETRMMERLAVDGNELLRFHGAIVTCSLGNNDFSSICHRECCGVCKMVGSSLSEGEE SVVLSNNSRQAHRKVVTDCVVDKICARKAIVVCRVIAGRVARYRGHGLVDGQEGGFDS VVSLSRDQLEGSEELIVLNARAVLPCFVVVYKAKGHKM" gene complement(2598713..2602596) /locus_tag="TCM_022094" /note="dbxref CacaoGD:Thecc1EG022094" mRNA complement(join(2598713..2599242,2599913..2600014, 2600652..2600710,2600807..2600875,2601431..2601696, 2601773..2601849,2602064..2602275,2602568..2602596)) /locus_tag="TCM_022094" /product="Ribonuclease P family protein, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene09631" /inference="alignment:exonerate- protein:2:Phytozome:Glyma11g01420.1" /inference="similar to AA sequence:Phytozome:Glyma11g01420.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00981t00002; inference alignment:Newbler:10:TSA:cgbaP2_g00981t00001" mRNA complement(join(2598713..2599242,2599913..2600014, 2600652..2600710,2600807..2600875,2601431..2601696, 2601773..2601849,2601942..2601977,2602064..2602275, 2602568..2602596)) /locus_tag="TCM_022094" /product="Ribonuclease P family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma11g01420.1" /inference="similar to AA sequence:Phytozome:Glyma11g01420.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00981t00001; inference alignment:Newbler:10:TSA:cgbaP2_g00981t00001" CDS complement(join(2599145..2599242,2599913..2600014, 2600652..2600710,2600807..2600875,2601431..2601696, 2601773..2601849,2602064..2602271)) /locus_tag="TCM_022094" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Ribonuclease P family protein, putative isoform 2" /protein_id="EOY07760.1" /db_xref="Phytozome:Glyma11g01420.2" /db_xref="TAIR:AT2G43190.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TQH0" /translation="MATSTGPQDQRKRTLEALERRFAVAKAELHQQQKNKKTSVEEDG KETLSIDSSIANASIASSSNSSSKKDVEENGQAYSRLLEPIHQSLLPANSKFSNNKGS VADKILHELLQSGDSARKYMQGSRSIKIDNWILLDNYVQGRVMSTGSHIRALKKHSKR SRKHMSMKQLKKSGAFELPQAIQKFDTFKPMHEMWKGYMDQLLKTTGKNQLAQCLLGA DLHGAFILVAECKITSFTGVSGIMIRETAETFGLITQDDQFRVVPKKVSVFIFQVDCW RIILQGDKLTSRNLGL" CDS complement(join(2599145..2599242,2599913..2600014, 2600652..2600710,2600807..2600875,2601431..2601696, 2601773..2601849,2601942..2601977,2602064..2602271)) /locus_tag="TCM_022094" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Ribonuclease P family protein, putative isoform 1" /protein_id="EOY07759.1" /db_xref="Phytozome:Glyma11g01420.2" /db_xref="TAIR:AT2G43190.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TQH0" /translation="MATSTGPQDQRKRTLEALERRFAVAKAELHQQQKNKKTSVEEDG KETLSIDSSIANASIASSSNSSSKKGNFSFSGPSTSQDVEENGQAYSRLLEPIHQSLL PANSKFSNNKGSVADKILHELLQSGDSARKYMQGSRSIKIDNWILLDNYVQGRVMSTG SHIRALKKHSKRSRKHMSMKQLKKSGAFELPQAIQKFDTFKPMHEMWKGYMDQLLKTT GKNQLAQCLLGADLHGAFILVAECKITSFTGVSGIMIRETAETFGLITQDDQFRVVPK KVSVFIFQVDCWRIILQGDKLTSRNLGL" gene 2602926..2610325 /locus_tag="TCM_022095" /note="dbxref CacaoGD:Thecc1EG022095" mRNA join(2602926..2602945,2605308..2605977,2606177..2606368, 2606464..2606703,2606920..2607137,2607520..2607774, 2608218..2608748,2610056..2610325) /locus_tag="TCM_022095" /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s08750.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041091t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s08750.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05410t00001" mobile_element complement(2603800..2604206) /note="source:CACAO_Mariner_E220_scaffold_9 9034 9432" /mobile_element_type="transposon:TIR/Tc1-Mariner" mRNA join(2605146..2605977,2606177..2606368,2606464..2606703, 2606920..2607137,2607520..2607780,2608216..2608795) /locus_tag="TCM_022095" /product="Alpha/beta-Hydrolases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s08750.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041091t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s08750.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1270t1; inference alignment:Newbler:10:TSA:cgbaB_g05410t00001" mRNA join(2605208..2605977,2606177..2606368,2606464..2606703, 2606920..2607137,2607520..2607770,2608218..2608765) /locus_tag="TCM_022095" /product="Alpha/beta-Hydrolases superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s08750.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041091t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s08750.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1268t1_C2; inference alignment:Newbler:10:TSA:cgbaB_g05410t00001" CDS join(2605548..2605977,2606177..2606368,2606464..2606703, 2606920..2607137,2607520..2607774,2608218..2608487) /locus_tag="TCM_022095" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG041091t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /protein_id="EOY07761.1" /db_xref="Phytozome:POPTR_0016s08750.1" /db_xref="TAIR:AT5G02970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LYY8" /translation="MAEVRGVNTWQEELASLVEDTGMIYTGDMIGVSSLPPFNEAKSA AAAEVVESDHETEPQESLKEQVTGFMKSWCEMLLELGRGCIDIVQQTVVTEDSFLVQK LGGPVAKVSGRLRFLNEFLPEDRDPIHAWPVIFFVFILALSALKLNSGHDELVPPVKK VRAHPPNASRIQLPDGRHLAYREIGVPADKARFSLIAPHPFLSSRLAVIPGVKTSLLE EFGVRLVTYDLPGFGESDPHPSRNLNSSAFDMLHLADAVGVNDKFWVLGFSSGSMHAW AALRYVPHRISGAAMVAPMINPYEPSLTKEEMRSIWGEWLPRRKLMYYLARRLPKLLS FFYRRSFLSGKHGRIEKWMSLSLGRRDTVLTEGQTFEVFWHRDVEESIRQGNAKPFIE EAVLQVSNWGFSLADLQVQRRCYRSGIFPWLRSLYSQAECELAGFLGPIHIWQGMDDK AVPPAMMNYISRVLPGAIMHKLPNEGHFSFFYFCDECHRQILSTLLGSPQGPLDPVTD KGEILSEGDMEEQSSATDSTKNDTSP" CDS join(2605548..2605977,2606177..2606368,2606464..2606703, 2606920..2607137,2607520..2607780,2608216..2608251) /locus_tag="TCM_022095" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG041091t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 2" /protein_id="EOY07762.1" /db_xref="Phytozome:POPTR_0016s08750.1" /db_xref="TAIR:AT5G02970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LYY8" /translation="MAEVRGVNTWQEELASLVEDTGMIYTGDMIGVSSLPPFNEAKSA AAAEVVESDHETEPQESLKEQVTGFMKSWCEMLLELGRGCIDIVQQTVVTEDSFLVQK LGGPVAKVSGRLRFLNEFLPEDRDPIHAWPVIFFVFILALSALKLNSGHDELVPPVKK VRAHPPNASRIQLPDGRHLAYREIGVPADKARFSLIAPHPFLSSRLAVIPGVKTSLLE EFGVRLVTYDLPGFGESDPHPSRNLNSSAFDMLHLADAVGVNDKFWVLGFSSGSMHAW AALRYVPHRISGAAMVAPMINPYEPSLTKEEMRSIWGEWLPRRKLMYYLARRLPKLLS FFYRRSFLSGKHGRIEKWMSLSLGRRDTVLTEGQTFEVFWHRDVEESIRQGNAKPFIE EAVLQVSNWGFSLADLQVQRRCYRSGIFPWLRSLYSQAECELAGFLGPIHIWQVCRGW MTKLFHQQ" CDS join(2605548..2605977,2606177..2606368,2606464..2606703, 2606920..2607137,2607520..2607770,2608218..2608251) /locus_tag="TCM_022095" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG041091t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 3" /protein_id="EOY07763.1" /db_xref="Phytozome:POPTR_0016s08750.1" /db_xref="TAIR:AT5G02970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LYY8" /translation="MAEVRGVNTWQEELASLVEDTGMIYTGDMIGVSSLPPFNEAKSA AAAEVVESDHETEPQESLKEQVTGFMKSWCEMLLELGRGCIDIVQQTVVTEDSFLVQK LGGPVAKVSGRLRFLNEFLPEDRDPIHAWPVIFFVFILALSALKLNSGHDELVPPVKK VRAHPPNASRIQLPDGRHLAYREIGVPADKARFSLIAPHPFLSSRLAVIPGVKTSLLE EFGVRLVTYDLPGFGESDPHPSRNLNSSAFDMLHLADAVGVNDKFWVLGFSSGSMHAW AALRYVPHRISGAAMVAPMINPYEPSLTKEEMRSIWGEWLPRRKLMYYLARRLPKLLS FFYRRSFLSGKHGRIEKWMSLSLGRRDTVLTEGQTFEVFWHRDVEESIRQGNAKPFIE EAVLQVSNWGFSLADLQVQRRCYRSGIFPWLRSLYSQAECELAGFLGPIHIWGWMTKL FHQQ" mobile_element 2608810..2609941 /note="source:CACAO_on_E683_scaffold_9 1194 2303" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(2610642..2611905) /locus_tag="TCM_022096" /note="dbxref CacaoGD:Thecc1EG022096" mRNA complement(join(2610642..2610915,2611501..2611679, 2611801..2611905)) /locus_tag="TCM_022096" /product="Chaperone DnaJ-domain superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g20060.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043084t2" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400030720" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g11790t00001" CDS complement(join(2610759..2610915,2611501..2611679, 2611801..2611839)) /locus_tag="TCM_022096" /note="paralog of Thecc1EG043084t2" /codon_start=1 /product="Chaperone DnaJ-domain superfamily protein" /protein_id="EOY07764.1" /db_xref="Phytozome:PGSC0003DMP400030720" /db_xref="TAIR:AT2G35795.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9T313" /translation="MQKSRDLSDASEMVAPLIAGLAVAAAAYAGRYSIQAWQAFKARP PTARIRRFYEGGFQPIMTKREAALILGVRESTPAEKIREAHRRVMVANHPDAGGSHYL ASKINEAKDMMLGKAKGGSSAF" gene complement(2612705..2616923) /locus_tag="TCM_022097" /note="dbxref CacaoGD:Thecc1EG022097" mRNA complement(join(2612705..2614042,2614666..2614785, 2615107..2615328,2615543..2615863,2615952..2616051, 2616645..2616923)) /locus_tag="TCM_022097" /product="IQ-domain 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s13330.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043085t4" /inference="similar to AA sequence:Phytozome:POPTR_0016s08760.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02417t00001" CDS complement(join(2613344..2614042,2614666..2614785, 2615107..2615328,2615543..2615863,2615952..2616026)) /locus_tag="TCM_022097" /note="paralog of Thecc1EG043085t4" /codon_start=1 /product="IQ-domain 1" /protein_id="EOY07765.1" /db_xref="Phytozome:POPTR_0016s08760.1" /db_xref="TAIR:AT5G03040.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IJ09" /translation="MGRKGKWLSSLKKAFSPESKAKRNQKSKAQFSEKQVHLGPSGSD AATLEAVKLSPPPQPEEVKLTEAEAEQSRQTYPVAVATAADDAVAPAVPAQAAVEVVW RQLNTGARFAGKSEEEAAAIKIQTAFRGYLAKRALRALRGLFRLKSLMEGPVVKRQAA STLRCMQTLSRVQCQIRTRRIRMTEENQALQRQLLQKHAKDLVNLQMGEEWDDSLQSK EQLEASLLSKHEAAMRRERAMAYSFTHQQTWKNSSRSMSPLFMDPNNPSWGWSWLERW MAARPWEGRGMTEKEQSNDQSSVKSARSNFGGEISKSYARYQLNLDKQSPKASQKPSQ TSSLRSPSTPKQASIPARKLKSASPRSSVVGPDDDTRSMISVQSERNRRHSIAGSSVR DDESLASSPSLPSYMVPTESARAKTRLQSPLGLEANGTPEKEPIASAKKRLSYPPSPA RPRRHSGPPKVDSSITKTEVAVVNGGGS" gene complement(2619959..2622792) /locus_tag="TCM_022098" /note="dbxref CacaoGD:Thecc1EG022098" mRNA complement(join(2619959..2620357,2621170..2621416, 2621746..2622792)) /locus_tag="TCM_022098" /product="Glycosyl transferase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s08770.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s08770.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g09533t00001" CDS complement(join(2620181..2620357,2621170..2621416, 2621746..2622422)) /locus_tag="TCM_022098" /codon_start=1 /product="Glycosyl transferase" /protein_id="EOY07766.1" /db_xref="Phytozome:POPTR_0016s08770.1" /db_xref="TAIR:AT2G37090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MT92" /translation="MGSVERSKKKVQLWKKAIVHFSLCFVMGFFTGFAPTGKDSIFSS RVATENKSQISPQPVQTLNQSATAVHSSNVSRSLRAETPVPVPAKSKELESPKQVDTH EVIKLPDRRLIIVVTPTSTKDQFQGVLLRRLANTIKLVPQPLLWIVVEGKSDSNEVSE ILRKTGIMYRHLVFKENFTDPEAEQNHQRNMALKHIEHHKLSGIVHFAGLSNVYDLDF FKELRQIEVFGTWPMALLSANKRKVVIEGPVCDSSQVIGWHLRKMNNHTDAETDAEPK PPIHISSFAFNSSILWDPERWGRPTSVQGTSQNSLKFVKQVVLEDETKLKGIPPEECS KIMLWRLRFPIGVVPRDLVKTASLLDVTVTQR" gene complement(2623389..2634919) /locus_tag="TCM_022099" /note="dbxref CacaoGD:Thecc1EG022099" mRNA complement(join(2623389..2624084,2624190..2624279, 2624455..2624524,2624616..2625499,2625622..2626103, 2626920..2627414,2629610..2630083,2634828..2634919)) /locus_tag="TCM_022099" /product="GTP binding Elongation factor Tu family protein" /inference="alignment:exonerate- protein:2:ricco:29938.m000598" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041078t1" /inference="similar to AA sequence:ricco:29938.m000598" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Newbler:10:TSA:cgbaL_g06382t00001" CDS complement(join(2623890..2624084,2624190..2624279, 2624455..2624524,2624616..2625499,2625622..2626083)) /locus_tag="TCM_022099" /note="dbxref ricco:29938.m000598; paralog of Thecc1EG041078t1" /codon_start=1 /product="GTP binding Elongation factor Tu family protein" /protein_id="EOY07767.1" /db_xref="TAIR:AT5G60390.3" /db_xref="UniProtKB/TrEMBL:UniRef50_A8WGK7" /translation="MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEK EAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNM ITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP KYSKARYDEIVKEVSSYLKKVGYNPEKIPFVPISGFEGDNMIERSTNLDWYKGPTLLD ALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGTLKPGMVVTFGPTGLTTE VKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAASFTSQVII MNHPGQIGNGYAPVLDCHTSHIAVKFAELLTKIDRRSGKELEKEPKFLKNGDAGFVKM IPTKPMVVETFSGYPPLGRFAVRDMRQTVAVGVIKSVDKKDASGAKVTKSAAKKSGNF VDQFLYAVVCVWFGLRLAKLSEFDCEQISKVTRDPSNRNAACKIIGAGILDQNKLCKG FEPSLTNYQLPFVLNFDQELSSPKQDIAISNCRLHRINAKVTDTCAVMLNSVWALPLL " gene 2627247..2638445 /locus_tag="TCM_022100" /note="dbxref CacaoGD:Thecc1EG022100" mRNA join(2627247..2627306,2636999..2637016,2637878..2638445) /locus_tag="TCM_022100" /product="Pre-mRNA splicing factor-related" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008068t1" /inference="similar to AA sequence:frave:gene08122" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.47 coverage" mobile_element complement(2628051..2629077) /note="source:CACAO_Again_on_E173_scaffold_7 2 1028" /mobile_element_type="transposon:TIR/hAT" mobile_element 2632333..2634267 /note="source:scaffold_5_CACTA_0600 3416 5370" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2634321..2635045 /note="source:scaffold_5_CACTA_0600 5371 6101" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2635255..2635400 /note="source:INTACT561_F253_scaffold_5-int 4298 4443" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(2635287..2635579) /note="source:INTACT590_F88_scaffold_1-int 248 530" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 2635403..2635526 /note="source:INTACT561_F253_scaffold_5-int 4319 4444" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(2636388..2636864) /note="source:CACAO_PIF_E119_scaffold_3 1762 2280" /mobile_element_type="transposon:TIR/PIF-Harbinger" CDS join(2637000..2637016,2637878..2638211) /locus_tag="TCM_022100" /note="dbxref frave:gene08122; paralog of Thecc1EG008068t1" /codon_start=1 /product="Pre-mRNA splicing factor-related" /protein_id="EOY07768.1" /db_xref="TAIR:AT4G03430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0IWN2" /translation="MLTLECKVYDAAVAKLFWHDRKVDKARTWLNRAVTLAPDIGDFW ALYYKFELQRGSEENQKDVMKRCVAAEPKHGEKWQAISKAVENSHQPTEAILKKVVVA LGKEESAAENNSKH" mobile_element 2637042..2637107 /note="source:CACAO_PIF_E119_scaffold_3 1762 1826" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 2637123..2637214 /note="source:scaffold_9_CACTA_0936 330 421" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2637202..2637348) /note="source:CACAO_PIF_E119_scaffold_3 4482 4635" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(2637352..2637744) /note="source:scaffold_7_CACTA_0795 2864 3281" /mobile_element_type="transposon:TIR/CACTA" gene complement(2639109..2640979) /locus_tag="TCM_022103" /note="dbxref CacaoGD:Thecc1EG022103" mRNA complement(2639109..2640979) /locus_tag="TCM_022103" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.16 coverage" CDS complement(2640102..2640458) /locus_tag="TCM_022103" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07769.1" /translation="MVQNLLQLPSSCIQVLQMSIHLHKIQVFQQFILFHNLLSPFGNF LQPHHHVFKFFNCQYSFTDSSTVNIPSSNNSRSSTVDPISQSSFFNWTTPVAFLFLIS QSTQSVRKRYEIHVIN" gene complement(2641646..2646315) /locus_tag="TCM_022104" /note="dbxref CacaoGD:Thecc1EG022104" mRNA complement(join(2641646..2642144,2642262..2642412, 2642716..2642838,2643183..2643273,2643354..2643548, 2644523..2644755,2644826..2644906,2645084..2645180, 2645377..2645468,2645551..2645678,2645784..2645901, 2645992..2646315)) /locus_tag="TCM_022104" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29729.m002401" /inference="similar to AA sequence:Phytozome:GSVIVT01025641001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaL_g08974t00001" mRNA complement(join(2641708..2642144,2642340..2642412, 2642716..2642838,2643183..2643273,2643354..2643548, 2644523..2644755,2644826..2644906,2645084..2645180, 2645377..2645468,2645551..2645812)) /locus_tag="TCM_022104" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:29729.m002401" /inference="similar to AA sequence:Phytozome:GSVIVT01025641001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc2044t3; inference alignment:Newbler:10:TSA:cgbaL_g08974t00001" mRNA complement(join(2641708..2642144,2642262..2642412, 2642716..2642838,2643183..2643273,2643354..2643548, 2644523..2644755,2644826..2644906,2645084..2645180, 2645377..2645468,2645551..2645812)) /locus_tag="TCM_022104" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29729.m002401" /inference="similar to AA sequence:Phytozome:GSVIVT01025641001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc2044t10; inference alignment:Newbler:10:TSA:cgbaL_g08974t00001" CDS complement(join(2641936..2642144,2642262..2642412, 2642716..2642838,2643183..2643273,2643354..2643548, 2644523..2644755,2644826..2644906,2645084..2645180, 2645377..2645468,2645551..2645678,2645784..2645901, 2645992..2646072)) /locus_tag="TCM_022104" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /protein_id="EOY07770.1" /db_xref="Phytozome:GSVIVT01025641001" /db_xref="TAIR:AT3G09720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q84TG1" /translation="MEKGASFLFGGTNFNKKKFASDIARFKEKTETEDKVDYLSLFES GNPEKEEFTVSTKKRKRKQAVSEAVEGFNVFKSSKKALVESVENQKDEEEDKLSKEKK KLNQKLEADAILRKKFNIHVSGNNVASPLKSFAELSSVYGCESYLLRNFAELGFKEPT PIQRQAIPVLLSGRECFACAPTGSGKTLAFVSPMLMKLKHASSEGVRAVILCPTRELA AQTTRECKKLAKGNKFYIKLLTKKLIRSADLSKLPCDILISTPLRLSSAIKKRKLNLS RVEYLVLDESDKLFELGLLKQIDSVVKACSNPSIIRSLFSATLPDSVEELARTIMPDA VRVIIGRKNTASKSINQKLVFAGSEEGKLLALRQSFAEKLNPPVLIFVQSKERAKELY EELKFDNIRASVIHSDLSETQRENIVNDFRAGKTWVLIATDVIARGMDFKGVNCVINY DFPYSAAAYIHRIGRSGRAGRSGEAITFYTEDDVPFLRNIANVMAGSGCEVPSWIMAL RKLRWKKHRPKRESISTKPNEAED" CDS complement(join(2641936..2642144,2642340..2642412, 2642716..2642838,2643183..2643273,2643354..2643548, 2644523..2644755,2644826..2644906,2645084..2645180, 2645377..2645468,2645551..2645730)) /locus_tag="TCM_022104" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 3" /protein_id="EOY07772.1" /db_xref="Phytozome:GSVIVT01025641001" /db_xref="TAIR:AT3G09720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q84TG1" /translation="MNIQKKLFFFCLICWKVEAVEGFNVFKSSKKALVESVENQKDEE EDKLSKEKKKLNQKLEADAILRKKFNIHVSGNNVASPLKSFAELSSVYGCESYLLRNF AELGFKEPTPIQRQAIPVLLSGRECFACAPTGSGKTLAFVSPMLMKLKHASSEGVRAV ILCPTRELAAQTTRECKKLAKGNKFYIKLLTKKLIRSADLSKLPCDILISTPLRLSSA IKKRKLNLSRVEYLVLDESDKLFELGLLKQIDSVVKACSNPSIIRSLFSATLPDSVEE LARTIMPDAVRVIIGRKNTASKSINQKLVFAGSEEGKLLALRQSFAEKLNPPVLIFVQ SKERAKELYEELKFDNIRASVIHSDLSETQRENIVNDFRAGKTWVLIATDVIARGRSG RAGRSGEAITFYTEDDVPFLRNIANVMAGSGCEVPSWIMALRKLRWKKHRPKRESIST KPNEAED" CDS complement(join(2641936..2642144,2642262..2642412, 2642716..2642838,2643183..2643273,2643354..2643548, 2644523..2644755,2644826..2644906,2645084..2645180, 2645377..2645468,2645551..2645730)) /locus_tag="TCM_022104" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /protein_id="EOY07771.1" /db_xref="Phytozome:GSVIVT01025641001" /db_xref="TAIR:AT3G09720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q84TG1" /translation="MNIQKKLFFFCLICWKVEAVEGFNVFKSSKKALVESVENQKDEE EDKLSKEKKKLNQKLEADAILRKKFNIHVSGNNVASPLKSFAELSSVYGCESYLLRNF AELGFKEPTPIQRQAIPVLLSGRECFACAPTGSGKTLAFVSPMLMKLKHASSEGVRAV ILCPTRELAAQTTRECKKLAKGNKFYIKLLTKKLIRSADLSKLPCDILISTPLRLSSA IKKRKLNLSRVEYLVLDESDKLFELGLLKQIDSVVKACSNPSIIRSLFSATLPDSVEE LARTIMPDAVRVIIGRKNTASKSINQKLVFAGSEEGKLLALRQSFAEKLNPPVLIFVQ SKERAKELYEELKFDNIRASVIHSDLSETQRENIVNDFRAGKTWVLIATDVIARGMDF KGVNCVINYDFPYSAAAYIHRIGRSGRAGRSGEAITFYTEDDVPFLRNIANVMAGSGC EVPSWIMALRKLRWKKHRPKRESISTKPNEAED" mRNA complement(join(<2642020..2642048,2642262..2642412, 2642716..2642838,2643183..2643273,2643354..2643548, 2644523..2644755,2644826..2644906,2645084..2645180, 2645377..2645468,2645551..2645812)) /locus_tag="TCM_022104" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:29729.m002401" /inference="similar to AA sequence:Phytozome:GSVIVT01025641001" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc2044t1; inference alignment:Newbler:10:TSA:cgbaL_g08974t00001" CDS complement(join(<2642020..2642048,2642262..2642412, 2642716..2642838,2643183..2643273,2643354..2643548, 2644523..2644755,2644826..2644906,2645084..2645180, 2645377..2645468,2645551..2645730)) /locus_tag="TCM_022104" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 4" /protein_id="EOY07773.1" /db_xref="Phytozome:GSVIVT01025641001" /db_xref="TAIR:AT3G09720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q84TG1" /translation="MNIQKKLFFFCLICWKVEAVEGFNVFKSSKKALVESVENQKDEE EDKLSKEKKKLNQKLEADAILRKKFNIHVSGNNVASPLKSFAELSSVYGCESYLLRNF AELGFKEPTPIQRQAIPVLLSGRECFACAPTGSGKTLAFVSPMLMKLKHASSEGVRAV ILCPTRELAAQTTRECKKLAKGNKFYIKLLTKKLIRSADLSKLPCDILISTPLRLSSA IKKRKLNLSRVEYLVLDESDKLFELGLLKQIDSVVKACSNPSIIRSLFSATLPDSVEE LARTIMPDAVRVIIGRKNTASKSINQKLVFAGSEEGKLLALRQSFAEKLNPPVLIFVQ SKERAKELYEELKFDNIRASVIHSDLSETQRENIVNDFRAGKTWVLIATDVIARGMDF KGVNCVINYDFPYSAAAYIHRIGSGCEVPSWI" gene complement(2646370..2652899) /locus_tag="TCM_022105" /note="dbxref CacaoGD:Thecc1EG022105" mRNA complement(join(2646370..2647009,2647339..2647644, 2647721..2647779,2647877..2647958,2648325..2648475, 2648563..2648642,2648771..2648955,2649203..2649305, 2649540..2649693,2649800..2650022,2650104..2650371, 2652885..2652899)) /locus_tag="TCM_022105" /product="Importin alpha isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s08790.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s08790.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05466t00001" CDS complement(join(2646845..2647009,2647339..2647644, 2647721..2647779,2647877..2647958,2648325..2648475, 2648563..2648642,2648771..2648955,2649203..2649305, 2649540..2649693,2649800..2650022,2650104..2650155)) /locus_tag="TCM_022105" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Importin alpha isoform 1" /protein_id="EOY07774.1" /db_xref="Phytozome:POPTR_0016s08790.1" /db_xref="TAIR:AT5G03070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KF65" /translation="MADDSAASHRRDPIKSSVGNVAAQRRRQNAVTVGKERRESLVRA KRLCRVGPSADGDVPVEGNDMITDEEEFLLEAQTSSAVEDLKSTVAYQGKGAMQKRVN ALRELRRLLSKSEFPPIEAALKAGAIPLLVQCLSFGSQDEQLLEAAWCLTNIAAGKPE ETKALLPALPLLIAHLGEKSSLPVAEQCAWALGNVAGEGEELRNVLLSQGALPPLARM MLPNKGSTVRTAAWALSNLIKGPDPKAATELIRVDGVLDAILRHLRKSDEELATEVAW VVVYLSALSNFATGVLVKTDVLHLLVERLATSNSLQLLIPVLRSLGNLVAGDSHTTST ILVPGLEITDGVIKVLVKCLKSEHRVLKKEASWVLSNIAAGSVEHKQLIYSSEAVPLL LHLLSTAPFDIRKEVAYVLGNLCVAPTGGDGKPNLIQEHLVSLVQRGCLSGFIDLVRS ADVEAARLGLQFMELVLRGMPSGEGPKLVEREDGIDAMERYQFHENEDLRNMANGLVD KYFGEDYGVDE" mRNA complement(join(2646985..2647148,2647339..2647644, 2647721..2647779,2647877..2647958,2648325..2648475, 2648563..2648642,2648771..2648955,2649203..2649305, 2649540..2649693,2649800..2650022,2650104..2650249)) /locus_tag="TCM_022105" /product="Importin subunit alpha-2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s08790.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s08790.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc677t3; inference alignment:Newbler:10:TSA:cgbaB_g05466t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13354t3" CDS complement(join(2647092..2647148,2647339..2647644, 2647721..2647779,2647877..2647958,2648325..2648475, 2648563..2648642,2648771..2648955,2649203..2649305, 2649540..2649693,2649800..2650022,2650104..2650155)) /locus_tag="TCM_022105" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Importin subunit alpha-2 isoform 2" /protein_id="EOY07775.1" /db_xref="Phytozome:POPTR_0016s08790.1" /db_xref="TAIR:AT5G03070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KF65" /translation="MADDSAASHRRDPIKSSVGNVAAQRRRQNAVTVGKERRESLVRA KRLCRVGPSADGDVPVEGNDMITDEEEFLLEAQTSSAVEDLKSTVAYQGKGAMQKRVN ALRELRRLLSKSEFPPIEAALKAGAIPLLVQCLSFGSQDEQLLEAAWCLTNIAAGKPE ETKALLPALPLLIAHLGEKSSLPVAEQCAWALGNVAGEGEELRNVLLSQGALPPLARM MLPNKGSTVRTAAWALSNLIKGPDPKAATELIRVDGVLDAILRHLRKSDEELATEVAW VVVYLSALSNFATGVLVKTDVLHLLVERLATSNSLQLLIPVLRSLGNLVAGDSHTTST ILVPGLEITDGVIKVLVKCLKSEHRVLKKEASWVLSNIAAGSVEHKQLIYSSEAVPLL LHLLSTAPFDIRKEVAYVLGNLCVAPTGGDGKPNLIQEHLVSLVQRGCLSGFIDLVRS ADVEAARLGLQFMELVDMGEFTYAAHLFSLLLI" mobile_element 2651562..2652043 /note="source:INTACT135F_F90_scaffold_2-int 12863 13423" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 2652445..2652973 /note="source:INTACT135F_F90_scaffold_2-int 13409 13993" /mobile_element_type="retrotransposon:LTR/Copia" gene 2652834..2655925 /locus_tag="TCM_022106" /note="dbxref CacaoGD:Thecc1EG022106" mRNA join(2652834..2653899,2655455..2655925) /locus_tag="TCM_022106" /product="Phosphatidic acid phosphatase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s13280.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s13280.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.39 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03612t00001" CDS join(2653026..2653899,2655455..2655507) /locus_tag="TCM_022106" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Phosphatidic acid phosphatase family protein isoform 1" /protein_id="EOY07776.1" /db_xref="Phytozome:POPTR_0006s13280.1" /db_xref="TAIR:AT5G03080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NLA5" /translation="MGSPGFPRVGISVAVTSLILFPYSQFSPCGQLTKKQNPKRQLET ELSQSKSHLETTLNLNSFKNPDQILNQIFTMTTHHPLKAVTLTHVRYQRGDRLGHFLA WVSLVPVFISLGGFVSHFIFRRELQGMFFALGLIVSQFINELIKKSVQQARPETCALL EMCDSHGWPSSHSQYMFFFAVYFTLLTCKGIGGIWNVRTKWAALFLPWSLAVLTMYSR VYLGYHTVAQVFAGAALGIFLGGVWFWLVNSKLFCYFPLIEESAFGRYFYAKDTSHIS DVLKFEYDNARAARKGQYLHHCVSRFCFYAYK" mRNA join(<2653052..2653958,2655455..2655857) /locus_tag="TCM_022106" /product="Phosphatidic acid phosphatase family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s13280.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s13280.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is medium, protein is partial5; similar to RNA sequence, EST 0.43 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g07909t00001; inference alignment:Newbler:10:TSA:cgbaP1_g03612t00001" CDS <2653053..2653940 /locus_tag="TCM_022106" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Phosphatidic acid phosphatase family protein isoform 3" /protein_id="EOY07778.1" /db_xref="Phytozome:POPTR_0006s13280.1" /db_xref="TAIR:AT5G03080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NLA5" /translation="GISVAVTSLILFPYSQFSPCGQLTKKQNPKRQLETELSQSKSHL ETTLNLNSFKNPDQILNQIFTMTTHHPLKAVTLTHVRYQRGDRLGHFLAWVSLVPVFI SLGGFVSHFIFRRELQGMFFALGLIVSQFINELIKKSVQQARPETCALLEMCDSHGWP SSHSQYMFFFAVYFTLLTCKGIGGIWNVRTKWAALFLPWSLAVLTMYSRVYLGYHTVA QVFAGAALGIFLGGVWFWLVNSKLFCYFPLIEESAFGRYFYAKDTSHISDVLKFEYDN ARAARKGMAARKAMASKSS" mRNA join(<2653127..2653743,2653855..2653958,2655455..2655856) /locus_tag="TCM_022106" /product="Phosphatidic acid phosphatase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s13280.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s13280.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.53 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09376t00001; inference alignment:Newbler:10:TSA:cgbaP1_g03612t00001" CDS join(<2653128..2653743,2653855..2653940) /locus_tag="TCM_022106" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Phosphatidic acid phosphatase family protein isoform 2" /protein_id="EOY07777.1" /db_xref="Phytozome:POPTR_0006s13280.1" /db_xref="TAIR:AT5G03080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NLA5" /translation="KQNPKRQLETELSQSKSHLETTLNLNSFKNPDQILNQIFTMTTH HPLKAVTLTHVRYQRGDRLGHFLAWVSLVPVFISLGGFVSHFIFRRELQGMFFALGLI VSQFINELIKKSVQQARPETCALLEMCDSHGWPSSHSQYMFFFAVYFTLLTCKGIGGI WNVRTKWAALFLPWSLAVLTMYSRVYLGYHTVAQVFAGAALGIFLDVLKFEYDNARAA RKGMAARKAMASKSS" gene 2657033..2663608 /locus_tag="TCM_022107" /note="dbxref CacaoGD:Thecc1EG022107" mRNA join(2657033..2657421,2657535..2657586,2657831..2662032, 2662759..2663294,2663584..2663608) /locus_tag="TCM_022107" /product="Purine biosynthesis 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s05880.1" /inference="similar to AA sequence:ricco:30143.m001172" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc651t5" mobile_element complement(2657189..2657282) /note="source:CACAO_Mutator_E1018_scaffold_5 6523 6616" /mobile_element_type="transposon:TIR/Mutator" CDS join(2657545..2657586,2657831..2662027) /locus_tag="TCM_022107" /note="dbxref ricco:30143.m001172" /codon_start=1 /product="Purine biosynthesis 4" /protein_id="EOY07779.1" /db_xref="TAIR:AT1G74260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E8RBH0" /translation="MAGVREITAAELLHGTTSQTLFLQRNLSIKRGNLLWGKLCNPSR MGYMFNTKGVSLRCSAQSKPRATASGNVRTSLVDEQPGLIEKPAQEVIHFYRVPLIQE SANDELLKLVQTKVSNQIVGLKTEQCFNIGLDSNISSEKLSTLKWILGETYEPENLAT ESLLEKKRQKGVNAVIVEVGPRLSFTTAWSSNAVSICQSCGLTEVTRMERSRRYLLYS KGVLQEHQINEFAAMVHDRMTECVYSQKLTSFETSVVPEEVRFVPVIEKGRKALEEIN QKMGLAFDEQDLQYYTRLFMEDIKRNPTNVELFDIAQSNSEHSRHWFFTGKIVIDGQP MDRTLMQIVKSTLKANPNNSVIGFKDNSSAIKGFLAYRLRPVKPGTACPLNETTREID VLFTAETHNFPCAVAPYPGAETGAGGRIRDTHATGRGSFVIAATAGYTTGNLNLEGSY APWEDPSFTYPSNLASPLEILIEASNGASDYGNKFGEPLIQGFTRTFGMRLPSGERRE WLKPIMFSAGIGQIDHTHISKGDPEIGMLVVKIGGPAYRIGMGGGAASSMVSGQNDAE LDFNAVQRGDAEMAQKLYRVVRACVEMGEDNPIISIHDQGAGGNCNVVKEIIYPKGAE IDIRAIVVGDHTMSVLEIWGAEYQEQDAILVKPESRNLLESICARERLSMAVIGTING EGRVVLVDSLANEKCRASGLPPPPPAVDLELEKVLGDMPQKSFEFKRVAYAREPLDIA PGVTVMDSLKRVLRLPSVCSKRFLTTKVDRCVTGLVAQQQTVGPLQLPLSDVAVIAQS YVDFTGGACAIGEQPIKGLLDPRAMARLAVGEALTNLVWAKVTSLSDVKASGNWMYAA KLEGEGAAMYDAAIALSEAMIELGIAIDGGKDSLSMAAHAGGEVVKAPGNLVISAYVT CPDITKTVTPDLKLGEDGVLLHIDLAKGKRRLGGSALAQVFDQIGNECPDLDDVSYLK RVFEGVQDLLGDGMISAGHDISDGGLLVCALEMAFAGNCGIVLDLASQGKSVFQSLFA EELGLILEVSKNNLDSVVRKLSSMDVSAELIGQVTTLPMIELKVDGITHLNEKTSLLR DMWEDTSFQLEKLQRLASCVELEKEGLKFRHEPSWALSFTPSFTDEKYMTATLKPKVA IIREEGSNGDREMSAAFYAAGFEPWDVTMSDLLNGAISLHDFRGIAFVGGFSYADVLD SAKGWAASIRFNQPLLNQFQEFYKRPDTFSLGVCNGCQLMALLGWVPGPQVGGVFGAG GDPSQPRFVHNESGRFECRFTSVTIKDSPAMMFKGMEGSTLGVWAAHGEGRAYFPDDG VLDRVLHSDLAPLRYCDDDGNPTEAYPFNLNGSPLGVAAICSPDGRHLAMMPHPERCF LMWQYPWYPKDWNVDKKGPSPWLRMFQNAREWCS" gene 2663744..2668193 /locus_tag="TCM_022108" /note="dbxref CacaoGD:Thecc1EG022108" mRNA join(2663744..2664326,2664863..2664889,2665585..2666000, 2666853..2667108,2667262..2668193) /locus_tag="TCM_022108" /product="Retinitis pigmentosa 1-like 1 protein, putative" /inference="alignment:exonerate- protein:2:ricco:29805.m001475" /inference="similar to AA sequence:ricco:29805.m001475" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08489t00001" CDS join(2663900..2664326,2664863..2664889,2665585..2666000, 2666853..2667108,2667262..2667380) /locus_tag="TCM_022108" /note="dbxref ricco:29805.m001475" /codon_start=1 /product="Retinitis pigmentosa 1-like 1 protein, putative" /protein_id="EOY07780.1" /db_xref="TAIR:AT3G09730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SGQ2" /translation="MWQILLGAAVAGSTGLLAKHLFNPNPNPNNPISQGNPNSDNDQE KQDLQFQNGFLESGCESNGEDKGKQDGIFRFSSSESAGKTGVKTKDRNLRKKVVLKKA EKRSSGAGGVEVSRRKLAVCLKKRRTAKNVAYKCGSCPSKGEEKEGCWWDSSVFRWGL GFGIMYMMSAGKAEINKLNSTMDETAKVVQDLKTELCKRKSSCNVRASNSANEVTTGS KKFSGKNTQLLLDKSGTVNRDDNEIKVCSLPVIDDGEYASSVLTEEPEPEPEVGEMDQ LEAELESELQKLSETEVSTKSLHESVGQRSDSYQCQGVLPSELDQKLCHLLIEQQENQ IEELESELSSAQSKLRDKEAELQALKDCVRRLTNFSLSTVSDDDTEAQGEQARMNDQD CPIKSGLETRKSLVGMKRPIES" gene 2669387..2671210 /locus_tag="TCM_022109" /note="dbxref CacaoGD:Thecc1EG022109" mRNA 2669387..2671210 /locus_tag="TCM_022109" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29805.m001474" /inference="similar to AA sequence:ricco:29805.m001474" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13346t1" CDS 2669715..2670692 /locus_tag="TCM_022109" /note="dbxref ricco:29805.m001474" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07781.1" /db_xref="TAIR:AT5G03110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MT97" /translation="MKLSAKPISSPGRAEKYPPPLMRFLRSNVGSRSRGRSRSSPMFV RKKNTAIETQEPTSPKVTCMGQVRVKRSKQAGTKPGRHGAPTRRRSLCNWIRNALFCR HFAGKVKAKPSCRPTWKKWGAFFQMGSCRKPKTREDSSKFGNKIEDFVEGNEEEEEES EKNEKEAKIFVSSSSSSPPKNALILTRCRSAPYRSSSLACRFWESPLANQETNEEETE ETEEEKRENRGFQKEEAEVPTSEKVSIYRNSDHGSQMDSEKLEKSGFCKEFEEGKTEK PENNEELKTEQFGNVRPLILTRCKSEPARTAERLDPEMSFWKKRRLGFT" mobile_element 2673250..2673283 /note="source:CACAO_M_E1841_F5_scaffold_1 14492 14525" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2673256..2673289) /note="source:INTACT498_F231_scaffold_5-int 8415 8448" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2674676..2674768 /note="source:scaffold_5_CACTA_0615 1980 2067" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2675098..2675567 /note="source:CACAO_Again_on_E34_scaffold_1 643 1128" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(2675149..2675585) /note="source:CACAO_on_E717_scaffold_9 4 421" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 2676489..2677123 /locus_tag="TCM_022111" /note="dbxref CacaoGD:Thecc1EG022111" mRNA join(2676489..2676692,2676788..2676972,2677073..2677123) /locus_tag="TCM_022111" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025645001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1856t1" CDS join(2676605..2676692,2676788..2676972,2677073..2677093) /locus_tag="TCM_022111" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07782.1" /translation="MELIIIKARPISITLVLLLLLLSVPYFSTGSWDVSDREVYEIDY RGPETHSSIPPPDHSHGHRHWIHRETDAATLHKSSKGLKGGNSKGRNVRKIHG" gene 2679636..2681963 /locus_tag="TCM_022112" /note="dbxref CacaoGD:Thecc1EG022112" mRNA join(2679636..2680150,2680747..2680953,2681124..2681215, 2681382..2681963) /locus_tag="TCM_022112" /product="PLAC8 family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29805.m001472" /inference="similar to AA sequence:ricco:29805.m001472" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g01067t00001" mRNA join(2679650..2680150,2680747..2680949,2681382..2681892) /locus_tag="TCM_022112" /product="PLAC8 family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29805.m001472" /inference="similar to AA sequence:ricco:29805.m001472" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaL_g13977t00001; inference alignment:Newbler:10:TSA:cgbaP1_g01067t00001" CDS join(2679847..2680150,2680747..2680953,2681124..2681215, 2681382..2681621) /locus_tag="TCM_022112" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29805.m001472" /codon_start=1 /product="PLAC8 family protein isoform 1" /protein_id="EOY07783.1" /db_xref="TAIR:AT2G37110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MT99" /translation="MAHNNGSNNNDREESSPLLSKQVVEGDEKKEANGKKSKEATAEV AASPAVSTAAGYGWTADGLPLGHGSVVGEPMGRAQWDSPLLACLGRNDEFCSSDVEVC LLGSMAPCVLYGSNVERLGSVPGTFANHCLPYSGLYLIGNSFFGWNCLAPWFSYPSRT AIRRKFNLEAILYLLVNCFLPLHVVSPSCGDGGGGEVKCSVGTCEALNRLCGCCGSCV EDEMQREQCESACDFATHVFCHACALCQEGRELRRRLPHPGFNAQPVLVMMPPGEQTM GRGA" CDS join(2679847..2680150,2680747..2680949,2681382..2681621) /locus_tag="TCM_022112" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29805.m001472" /codon_start=1 /product="PLAC8 family protein isoform 2" /protein_id="EOY07784.1" /db_xref="TAIR:AT2G37110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MT99" /translation="MAHNNGSNNNDREESSPLLSKQVVEGDEKKEANGKKSKEATAEV AASPAVSTAAGYGWTADGLPLGHGSVVGEPMGRAQWDSPLLACLGRNDEFCSSDVEVC LLGSMAPCVLYGSNVERLGSVPGTFANHCLPYSGLYLIGNSFFGWNCLAPWFSYPSRT AIRRKFNLEGTCEALNRLCGCCGSCVEDEMQREQCESACDFATHVFCHACALCQEGRE LRRRLPHPGFNAQPVLVMMPPGEQTMGRGA" gene complement(2682850..2684804) /locus_tag="TCM_022113" /note="dbxref CacaoGD:Thecc1EG022113" mRNA complement(join(2682850..2683256,2684738..2684804)) /locus_tag="TCM_022113" /product="S1FA-like DNA-binding protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025155001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13355t1" CDS complement(join(2683038..2683256,2684738..2684767)) /locus_tag="TCM_022113" /codon_start=1 /product="S1FA-like DNA-binding protein" /protein_id="EOY07785.1" /translation="MSAEFEIGDKGNKISYETEAKGFNPGLIVLLVVVGLLLVFLVGN YALYLYAQKSLPPRKKKPVSKKKMKKERLKQGVSAPGE" gene complement(2685329..2686942) /locus_tag="TCM_022115" /note="dbxref CacaoGD:Thecc1EG022115" mRNA complement(join(2685329..2685592,2686188..2686493, 2686579..2686942)) /locus_tag="TCM_022115" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.34 coverage" CDS complement(join(2686435..2686493,2686579..2686921)) /locus_tag="TCM_022115" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07786.1" /translation="MPKDNSFNCLSSLLTLQIEARRPLPMPDSTCGIKASEILPPKTY AHCGPETASPVSCTRDKWLVFSCIPVNDRLDFTKFMSRFHSNGVANKTPPFTTTLHVP AILPVPTSYAYKDVHHSYSDIKTATTKPLSA" gene complement(2687212..2690242) /locus_tag="TCM_022116" /note="dbxref CacaoGD:Thecc1EG022116" mRNA complement(2687212..2690242) /locus_tag="TCM_022116" /product="Concanavalin A-like lectin protein kinase family protein" /inference="alignment:exonerate-protein:2:frave:gene09648" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030633t1" /inference="similar to AA sequence:frave:gene09648" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g13862t00001; inference alignment:Newbler:10:TSA:cgbaL_g10799t00001" mobile_element complement(2687462..2687512) /note="source:CACAO_M_E36185_F9_scaffold_5 7065 7116" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(2687982..2690126) /locus_tag="TCM_022116" /note="dbxref frave:gene09648; paralog of Thecc1EG030633t1" /codon_start=1 /product="Concanavalin A-like lectin protein kinase family protein" /protein_id="EOY07787.1" /db_xref="TAIR:AT3G53380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LFH9" /translation="MLPFSYKVTSVSLALFVCVFLNFNKTIATTEFDFGTLTLSSLKL LGDAHLNNGSVRLTRDLQVPYSGAGRALYSKPVRFRQPGTHYPCSFSTFFSFSITNLN PSSIGGGLAFVISPDGDFVGAGGGSLGLLDDQGKALGFVAVEFDTLMDVEFQDLNGNH VGLDLNSVVSSQVGDLGALDIDLKSGNLVNSWIEYDASIGVFNISVSYSNLKPKEPML SIALNLDQYVNDFMYVGFSGSTQGSTEVHSIEWWSFSASFESNSGSGSGSTSSPPPPT ASLMNPTANSVKSPPPSLAPSGSDSVSSTQQKSSKSSSSCHNQLCKQGPGAVAGVVTA GAFFLALFAGALIWVYSKKFKHVKKSESFASEVIKMPKEFSYKELKAATRCFNANRII GHGAFGTVYKGILPDNGDIVAVKRCSHSSQGKNEFLSELSIIGTLRHRNLVRLQGWCH EKGEILLVYDLMPNGSLDKALFEARTPLPWPHRQKILLGVASALAYLHQECDHQVIHR DVKTSNIMLDEGFNAKLGDFGLARQVEHDKSPDATVAAGTMGYLAPEYLLTGRATDKT DAFSYGAVVLEVASGRRPIERDANAAAKVGVSGNLVEWVWSLHREGRLLTAADARLED QFDEAEMRRVLLVGLACSHPDPLARPTMRSVVQMLVGEAEVPIVPRAKPSMSFSTSHL LLSLQDSVSDCNGMITLSSSSSENSYIGTDLV" gene complement(2695588..2698762) /locus_tag="TCM_022117" /note="dbxref CacaoGD:Thecc1EG022117" mRNA complement(join(2695588..2696262,2696630..2696795, 2696914..2697102,2697196..2697344,2698383..2698762)) /locus_tag="TCM_022117" /product="Peroxidase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g05800.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030222t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s13190.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1889t1" CDS complement(join(2695856..2696262,2696630..2696795, 2696914..2697102,2697196..2697344,2698383..2698470)) /locus_tag="TCM_022117" /note="paralog of Thecc1EG030222t1" /codon_start=1 /product="Peroxidase superfamily protein" /protein_id="EOY07788.1" /db_xref="Phytozome:POPTR_0006s13190.1" /db_xref="TAIR:AT2G37130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q42580" /translation="MLGKMATDRHHCCSSFIFLLLPLLLQFHSGKSDLQLNYYAESCP NAEEIIKQEVIKLYDKHGNTAVSWVRNLFHDCMVKSCDASLLLETVNGIQSEQLSDRS FGMRNFKYVKTIKQALEKECPMTVSCADIVSLSARDGIVLLGGPRIEMKTGRKDSKES YLTEVENTIPNHNDTMELVLSRFQSIGIDTEGTVALLGAHSVGRVHCVNLVHRLYPTV DPTLDPHYAEYLKGRCPTPDPNPKAVLYARNDRKTPMILDNMYYKNLLEHKGLLLVDQ QLTSDPTTSPFVEKMAADNGYFHDQFARAVLLLAENNPLTGDQGEVRKDCRYVNSD" mobile_element complement(2698193..2698299) /note="source:scaffold_3_CACTA_0377 2083 2192" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2699804..2699935) /note="source:scaffold_1_CACTA_0001 8394 8529" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2699813..2699995 /note="source:scaffold_4_CACTA_0482 4473 4692" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2699836..2700238 /note="source:CACAO_on_E717_scaffold_9 1 418" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(2703022..2704511) /locus_tag="TCM_022118" /note="dbxref CacaoGD:Thecc1EG022118" mRNA complement(join(2703022..2703966,2704104..2704392, 2704410..2704511)) /locus_tag="TCM_022118" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025651001" /inference="similar to AA sequence:Phytozome:GSVIVT01025651001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc2641t2" CDS complement(join(2703424..2703966,2704104..2704392, 2704410..2704483)) /locus_tag="TCM_022118" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07789.1" /db_xref="Phytozome:GSVIVT01025651001" /translation="MMLITTQIFPSNNLSPALYLSTPPPHTHTLSLSMADNLSLCLMG AMDRLWFHQIILFPEPFSLYFPKTLKPVQQPNSESTTTSTSPSSSLSLSSLPEDIPTV VSSPPDQQNSAISSPSTPPDDSRSEEEGVKKRPTRASLSCSRSRSHSSSPSTQKGRKN HRHSTSCSPGGKLQKSMSCRSLKDLELEEVKGFMDLGFIFKKENLNARMISVVPGLLR LGFLKTKQKTELNLAADELPKDDDIEPEETGVVRPYLSETWLIKRPDSPLLNLRVPRV YAAADMKKHLKFWARTVASVAQQEC" gene complement(2704897..2714382) /locus_tag="TCM_022119" /note="dbxref CacaoGD:Thecc1EG022119" mRNA complement(join(2704897..2705687,2705777..2705837, 2705927..2705994,2706110..2706145,2706244..2706417, 2706508..2706548,2706621..2706670,2706818..2706909, 2707017..2707091,2707206..2707294,2709292..2709352, 2709606..2709722,2709840..2710138,2710239..2710296, 2710369..2710523,2710593..2710669,2713174..2713672, 2714185..2714382)) /locus_tag="TCM_022119" /product="Seven transmembrane MLO family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025652001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041068t1" /inference="similar to AA sequence:Phytozome:GSVIVT01025652001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc858t8" mRNA complement(join(2704980..2705837,2705891..2705994, 2706110..2706145,2706244..2706417,2706508..2706548, 2706621..2706670,2706818..2706909,2707017..2707091, 2707206..2707294,2709292..2709352,2709606..2709722, 2709840..2710138,2710239..2710296,2710369..2710565)) /locus_tag="TCM_022119" /product="Seven transmembrane MLO family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025652001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041068t1" /inference="similar to AA sequence:Phytozome:GSVIVT01025652001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1829t3_C2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1829t4_C2; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc858t8" CDS complement(join(2705355..2705687,2705777..2705837, 2705927..2705994,2706110..2706145,2706244..2706417, 2706508..2706548,2706621..2706670,2706818..2706909, 2707017..2707091,2707206..2707294,2709292..2709352, 2709606..2709722,2709840..2710138,2710239..2710296, 2710369..2710494)) /locus_tag="TCM_022119" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG041068t1" /codon_start=1 /product="Seven transmembrane MLO family protein, putative isoform 1" /protein_id="EOY07790.1" /db_xref="Phytozome:GSVIVT01025652001" /db_xref="TAIR:AT3G45290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTA4" /translation="MAAGYTSPSSLEHTPTWALATVCFVFISISIALEHSIHLLTNWL KRRRKAALNDAVEKLKSELMLLGFMSLLLAVTQSRISHICIPAKMADIMLPCSKQVKS KITKVQAYDQNFESETSGRRFSSVSALKDDILWQIHRQLADDDQATTKSGAADIPYCS EGKVSLVTSKGLQQLHKFIFVLAVMQIVHSVVTMVLGRAKMRRWKAWEKETKTTEYQV ANDPERFRFTRQTTFGRRHVSTCTETSIQLWIKCFFRQFFNSVAKVDFMTLRHGFISA HLSGRYSNFDFQKYIERSLDEDFKIVVSISPLMWFVVVILMLVDVHGWHAYLWLSYVP LLVVLTVGTKLEVIVARMALQINNQNRVIRGTPLVQPKDELFWFGRPQFVLTLLHFAL FTNAFEVAFFIWVLILFGFDSCYHEHTAITATRIVLAIVVQVLCSYITLPLYALVTQM GSEFKSKALEDQTTKIIKQWHADVRDRRKRQELLQSPHPSMSTEWSPRRGSTAEFASL PRAGPTLTESIHLSNRGGITEEQDKIVKVEAGCSRGPSQPVILDRPMLRKG" CDS complement(join(2705923..2705994,2706110..2706145, 2706244..2706417,2706508..2706548,2706621..2706670, 2706818..2706909,2707017..2707091,2707206..2707294, 2709292..2709352,2709606..2709722,2709840..2710138, 2710239..2710296,2710369..2710494)) /locus_tag="TCM_022119" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG041068t1" /codon_start=1 /product="Seven transmembrane MLO family protein, putative isoform 2" /protein_id="EOY07791.1" /db_xref="Phytozome:GSVIVT01025652001" /db_xref="TAIR:AT3G45290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTA4" /translation="MAAGYTSPSSLEHTPTWALATVCFVFISISIALEHSIHLLTNWL KRRRKAALNDAVEKLKSELMLLGFMSLLLAVTQSRISHICIPAKMADIMLPCSKQVKS KITKVQAYDQNFESETSGRRFSSVSALKDDILWQIHRQLADDDQATTKSGAADIPYCS EGKVSLVTSKGLQQLHKFIFVLAVMQIVHSVVTMVLGRAKMRRWKAWEKETKTTEYQV ANDPERFRFTRQTTFGRRHVSTCTETSIQLWIKCFFRQFFNSVAKVDFMTLRHGFISA HLSGRYSNFDFQKYIERSLDEDFKIVVSISPLMWFVVVILMLVDVHGWHAYLWLSYVP LLVVLTVGTKLEVIVARMALQINNQNRVIRGTPLVQPKDELFWFGRPQFVLTLLHFAL FTNAFEVAFFIWVLILFGFDSCYHEHTAITATRIVLA" gene 2714477..2718541 /locus_tag="TCM_022120" /note="dbxref CacaoGD:Thecc1EG022120" mRNA join(2714477..2715121,2715221..2715278,2715374..2715630, 2715728..2715844,2715933..2715993,2716122..2716210, 2716345..2716419,2716508..2716602,2716864..2716913, 2717069..2717118,2717206..2717379,2717512..2717547, 2717667..2717734,2717836..2717896,2718001..2718541) /locus_tag="TCM_022120" /product="Seven transmembrane MLO family protein" /inference="alignment:exonerate- protein:2:frave:gene09653.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041062t1" /inference="similar to AA sequence:Phytozome:GSVIVT01025653001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc2470t1" CDS join(2714999..2715121,2715221..2715278,2715374..2715630, 2715728..2715844,2715933..2715993,2716122..2716210, 2716345..2716419,2716508..2716602,2716864..2716913, 2717069..2717118,2717206..2717379,2717512..2717547, 2717667..2717734,2717836..2717896,2718001..2718381) /locus_tag="TCM_022120" /note="paralog of Thecc1EG041062t1" /codon_start=1 /product="Seven transmembrane MLO family protein" /protein_id="EOY07792.1" /db_xref="Phytozome:GSVIVT01025653001" /db_xref="TAIR:AT1G61560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94KB7" /translation="MAAKEGSRSLEQTPTWAVAAVCFVLILISIIIEHVIHLIGMWLK KRHKRALCEALEKIKSELMLFGFMSLLLTVGQGVVSDICISKALGATWHPCSKNQESE SDKNEDKSSDSDEKHLRRLLTFQDSGGGGRRVLAAAGYDKCAAKGQVPFVSTDGIDQL HIFIFLLAISHVLYCVITLALGRAKMRKWKTWEMETRTVDYQFSHDPERFRFTRDTTF GRRHLSFWSRAPVLLWVVCFFRQFFRSVPKVDYLTLRYGFIIAHLAPQSETKFDFQKY IKRSLEEDFKVVVGINPIIWFFAVLFLLFNTHDGTGTYSYLWLPFLPLIIILLVGTKL LVVITNMGLRIQARGEVVKGTPVVQPGNDHFWFNRPHLLLYLIHFVLFQNAFQLAFLV WTLYEFSLKSCFHEKRGDIIIRTSMGMLIQILCSYVTLPLYALVTQMGSTMKPTIFNE RIANALRNWHQEAKKHIEHNQHSGTMTPFSSRSDTPSRGVTPLHLLHNHRGEADSSQT SPRGSNFGNEGWEIEGPDRGQVAEQKHKATNKVDNPSQHEIEIEPYDFSFDQRARK" gene complement(2718564..2728890) /locus_tag="TCM_022121" /note="dbxref CacaoGD:Thecc1EG022121" mRNA complement(join(2718564..2718694,2720851..2721214, 2721414..2721551,2721634..2721732,2722134..2722546, 2722621..2723379,2723629..2723781,2727575..2727681, 2728769..2728890)) /locus_tag="TCM_022121" /product="RING/U-box domain-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30078.m002352" /inference="similar to AA sequence:Phytozome:GSVIVT01025655001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1934t1" gene complement(2718579..2720205) /locus_tag="TCM_022122" /note="dbxref CacaoGD:Thecc1EG022122" mRNA complement(2718579..2720205) /locus_tag="TCM_022122" /product="Ubiquitin 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s06450.1.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031077t1" /inference="similar to AA sequence:frave:gene03175" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.27 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2126t1" CDS complement(2718812..2719957) /locus_tag="TCM_022122" /note="dbxref frave:gene03175; paralog of Thecc1EG031077t1" /codon_start=1 /product="Ubiquitin 4" /protein_id="EOY07796.1" /db_xref="TAIR:AT5G20620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P0CG48" /translation="MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNV KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTL TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST LHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK QLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKI QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQ" mRNA complement(join(2720794..2721214,2721414..2721551, 2721634..2721732,2722134..2722546,2722621..2723379, 2723629..2723781,2724762..2724885)) /locus_tag="TCM_022121" /product="RING/U-box domain-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30078.m002352" /inference="similar to AA sequence:Phytozome:GSVIVT01025655001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1934t1; alternateUTRof:Thecc1EG022121t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1934t1" CDS complement(join(2721065..2721214,2721414..2721551, 2721634..2721732,2722134..2722546,2722621..2723379, 2723629..2723728)) /locus_tag="TCM_022121" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="RING/U-box domain-containing protein, putative isoform 1" /protein_id="EOY07793.1" /db_xref="Phytozome:GSVIVT01025655001" /db_xref="TAIR:AT2G37150.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IQ07" /translation="MGHRHLFGTSQMFEGEHEQSWNHMHTEQPYVNLVRASTTEHGSF FCPVENMTVEGVHFSSHWNPVPRSSGYATSSHNVEAPHYQPDTSGPSHDVFLHPSPPV AFSAAPENYMHHASSSNHDRQTFHGIEGGFVDLTMGGVRGPHKRKSPGVPSVCERGGS SRYVGAGSSSDLPLSSDFWQEKPNIETQHMHWDHVAMPSSYRGNGLSIRGEGSMRNVR SRPALDLESNLVRTHLSSNPSHTAYSTSHPVDHSSSVDLSGQSSNALSREWEWGHLRI SPSHGRNQASDSSVFNHETNQFLGGSSATTASAEVGGLQHDFISGRNPVLPQSFNGNS AQSVRGVRTNYSQRSSPTFRASSSSVRLGHVAPSEEGMQVSAETYSSRHPRPLSAIAW RNNERNGRSRISNDRYRSLADDAAFHDRFSSEGFMIVDRSAFYGSRNMLDQHRDMRLD IDNMTYEELLALGERIGNVSTGLSEDLISKCLTESIYCSSGQFQDESSCVICLEEYKD MDEVGALNTCGHDYHVPCIKKWLSMKNTCPICKASALADDAKEK" CDS complement(join(2721065..2721214,2721414..2721551, 2721634..2721732,2722134..2722546,2722621..2723379, 2723629..2723728)) /locus_tag="TCM_022121" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="RING/U-box domain-containing protein, putative isoform 1" /protein_id="EOY07794.1" /db_xref="Phytozome:GSVIVT01025655001" /db_xref="TAIR:AT2G37150.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IQ07" /translation="MGHRHLFGTSQMFEGEHEQSWNHMHTEQPYVNLVRASTTEHGSF FCPVENMTVEGVHFSSHWNPVPRSSGYATSSHNVEAPHYQPDTSGPSHDVFLHPSPPV AFSAAPENYMHHASSSNHDRQTFHGIEGGFVDLTMGGVRGPHKRKSPGVPSVCERGGS SRYVGAGSSSDLPLSSDFWQEKPNIETQHMHWDHVAMPSSYRGNGLSIRGEGSMRNVR SRPALDLESNLVRTHLSSNPSHTAYSTSHPVDHSSSVDLSGQSSNALSREWEWGHLRI SPSHGRNQASDSSVFNHETNQFLGGSSATTASAEVGGLQHDFISGRNPVLPQSFNGNS AQSVRGVRTNYSQRSSPTFRASSSSVRLGHVAPSEEGMQVSAETYSSRHPRPLSAIAW RNNERNGRSRISNDRYRSLADDAAFHDRFSSEGFMIVDRSAFYGSRNMLDQHRDMRLD IDNMTYEELLALGERIGNVSTGLSEDLISKCLTESIYCSSGQFQDESSCVICLEEYKD MDEVGALNTCGHDYHVPCIKKWLSMKNTCPICKASALADDAKEK" mRNA complement(join(<2721524..2721551,2721634..2721732, 2722134..2722546,2722621..2723379,2723629..2723781, 2724762..2725198)) /locus_tag="TCM_022121" /product="RING/U-box domain-containing protein, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:30078.m002352" /inference="similar to AA sequence:Phytozome:GSVIVT01025655001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc809t14; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1934t1" CDS complement(join(<2721525..2721551,2721634..2721732, 2722134..2722546,2722621..2723379,2723629..2723728)) /locus_tag="TCM_022121" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="RING/U-box domain-containing protein, putative isoform 3" /protein_id="EOY07795.1" /db_xref="Phytozome:GSVIVT01025655001" /db_xref="TAIR:AT2G37150.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IQ07" /translation="MGHRHLFGTSQMFEGEHEQSWNHMHTEQPYVNLVRASTTEHGSF FCPVENMTVEGVHFSSHWNPVPRSSGYATSSHNVEAPHYQPDTSGPSHDVFLHPSPPV AFSAAPENYMHHASSSNHDRQTFHGIEGGFVDLTMGGVRGPHKRKSPGVPSVCERGGS SRYVGAGSSSDLPLSSDFWQEKPNIETQHMHWDHVAMPSSYRGNGLSIRGEGSMRNVR SRPALDLESNLVRTHLSSNPSHTAYSTSHPVDHSSSVDLSGQSSNALSREWEWGHLRI SPSHGRNQASDSSVFNHETNQFLGGSSATTASAEVGGLQHDFISGRNPVLPQSFNGNS AQSVRGVRTNYSQRSSPTFRASSSSVRLGHVAPSEEGMQVSAETYSSRHPRPLSAIAW RNNERNGRSRISNDRYRSLADDAAFHDRFSSEGFMIVDRSAFYGSRNMLDQHRDMRLD IDNMTYEELLALGERI" misc_feature complement(join(2725705..2726684,2727177..2727216, 2727703..2727794,2727869..2727944,2728769..2728899)) /locus_tag="TCM_022121" /note="Gene fragment of Thecc1EG022121t1; dbxref gnl|CacaoGD|Thecc1EG022121t1; quality class is weakpartial-partof is thecc1eg022121t1, express is medium, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00846t00003; dbxref CacaoGD:Thecc1EG022124t1" mobile_element 2732202..2732415 /note="source:scaffold_5_CACTA_0615 174 376" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2732366..2732772) /note="source:scaffold_5_CACTA_0615 1578 2007" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2732758..2733414) /note="source:scaffold_9_CACTA_0934 8987 9639" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2733405..2734954) /note="source:CACAO_M_E9483_F80_scaffold_2 6524 8082" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2734988..2736406 /note="source:scaffold_5_CACTA_0615 824 2260" /mobile_element_type="transposon:TIR/CACTA" gene 2737754..2742354 /locus_tag="TCM_022125" /note="dbxref CacaoGD:Thecc1EG022125" mRNA join(2737754..2738023,2738211..2738336,2738565..2738730, 2741011..2741096,2741233..2741301,2741410..2741454, 2741549..2741611,2741718..2741794,2742081..2742354) /locus_tag="TCM_022125" /product="Syntaxin of plants 71" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s13150.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041056t2" /inference="similar to AA sequence:ricco:30078.m002349" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13372t2" CDS join(2737868..2738023,2738211..2738336,2738565..2738730, 2741011..2741096,2741233..2741301,2741410..2741454, 2741549..2741611,2741718..2741794,2742081..2742096) /locus_tag="TCM_022125" /note="dbxref ricco:30078.m002349; paralog of Thecc1EG041056t2" /codon_start=1 /product="Syntaxin of plants 71" /protein_id="EOY07797.1" /db_xref="TAIR:AT3G09740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SKW3" /translation="MSVIDILTRVDVICKRYDKYDVEKQRDQNVSGDDAFARLYAAVE ADIESALQKGELASKEKSKASAVAVNAEIRRTKARLLEEVPKLQRLAVKKVKGISTEE LAARNDLVLALPDRIQAIPDGTSAPKQTGGWMSSAPSASRNEIKFDSDGRFDNEYFQE SEQSSQFRQEYEMRRMKQDQGLDMISEGLDTLKNMAHDMNEELDRQVPLMDEIDTKVD KAAADLKNTNVRLKDTVNQLRSSRNFCIDIVLLCIVLGIAAYLYNVLKK" gene complement(2743077..2745075) /locus_tag="TCM_022126" /note="dbxref CacaoGD:Thecc1EG022126" mRNA complement(join(2743077..2743940,2744349..2744635, 2744738..2745075)) /locus_tag="TCM_022126" /product="NAC domain protein, IPR003441, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025657001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041055t1" /inference="similar to AA sequence:Phytozome:GSVIVT01025657001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1912t1" CDS complement(join(2743347..2743940,2744349..2744635, 2744738..2744945)) /locus_tag="TCM_022126" /note="paralog of Thecc1EG041055t1" /codon_start=1 /product="NAC domain protein, IPR003441, putative" /protein_id="EOY07798.1" /db_xref="Phytozome:GSVIVT01025657001" /db_xref="TAIR:AT1G61110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTA7" /translation="MLAASASASASSMEKTPGSEIQLPPGFRFHPSDEELIVHYLKNK VTSSPLPASIIAEIDLYKYNPWELPSKALFGEDEWYFFSPRDRKYPNGARPNRAAASG YWKATGTDKPILTSCGTESIGVKKALVFYEGRPPRGTKTEWIMHEYRLRETMIWTPKR KGSMRLDDWVLCRVRQKSSTQRNRLGDRDITSHEPANSYLPKLNEVWLSNSNNPNVEM AESYLFSDCPMLPYIFASQNLPCFDTTTSSISFQNSDRSCTSAQEANSDTKKLQISFS SLESLFNPSKRKSMEGDNQATNFVPPSKKLIWDETEKEEVISLSNDCSDLNFYGTDHS EGNNFSPDQWNPIMQYQELNHLEFTEAC" mobile_element complement(2746668..2746755) /note="source:scaffold_4_CACTA_0503 6178 6265" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2746669..2750828) /note="source:INTACT850F_F2_scaffold_5-int 1 4191" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 2758321..2761211 /locus_tag="TCM_022127" /note="dbxref CacaoGD:Thecc1EG022127" mRNA join(2758321..2758922,2759037..2759433,2759653..2759864, 2760001..2761211) /locus_tag="TCM_022127" /product="C2H2-like zinc finger protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s08990.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041053t1" /inference="similar to AA sequence:Phytozome:GSVIVT01025658001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1932t1" CDS join(2758793..2758922,2759037..2759433,2759653..2759864, 2760001..2760746) /locus_tag="TCM_022127" /note="paralog of Thecc1EG041053t1" /codon_start=1 /product="C2H2-like zinc finger protein, putative" /protein_id="EOY07799.1" /db_xref="Phytozome:GSVIVT01025658001" /db_xref="TAIR:AT5G03150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IJ27" /translation="MSGDAFSMPVSRGGFVQDQNNANPNPKANPNPVKKKRNLPGTPD PDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVRKK VYICPEKTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKT CGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLTSVAATNLNFRNDTVNLPHGF AGRGVQDVAGISQLGSGFGQDFTGMPAAGLPEIVQMASGNLFGSSSLTNFDNHGHFPG FDKSGATSTNANLSLSPLPQGLKEEGGSKGNLMESLSSLYSETQNKQPKPAAPMSATA LLQKAAQMGSTRSNPSFFGNSFGVMSSSSSHTVSLSSTQDRNDQLHQVYPNHVKEQET FMASSSVSMSTDAGLGSSNLNSVASATSNNLEQLMLQTGAKHSNPSQLKMHHPGSNSI DQSLTRDFLGMSNDQSARPFLPQDLAKFASIGSTMGLSQFTSNH" gene 2763977..2768689 /locus_tag="TCM_022128" /note="dbxref CacaoGD:Thecc1EG022128" mRNA join(2763977..2764383,2765409..2765574,2765897..2766098, 2766185..2766345,2766447..2766540,2766754..2766966, 2767067..2767147,2767599..2767817,2768074..2768689) /locus_tag="TCM_022128" /product="Mamallian P58IPK isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g36460.1" /inference="similar to AA sequence:ricco:30078.m002346" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13364t3" mRNA join(2764114..2764383,2765409..2765574,2765897..2766098, 2766185..2766345,2766447..2766540,2766754..2766966, 2767064..2767147,2767599..2767817,2768074..2768572) /locus_tag="TCM_022128" /product="Mamallian P58IPK isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g36460.1" /inference="similar to AA sequence:ricco:30078.m002346" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1947t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13364t3" CDS join(2764251..2764383,2765409..2765574,2765897..2766098, 2766185..2766345,2766447..2766540,2766754..2766966, 2767064..2767147,2767599..2767817,2768074..2768253) /locus_tag="TCM_022128" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30078.m002346" /codon_start=1 /product="Mamallian P58IPK isoform 2" /protein_id="EOY07801.1" /db_xref="TAIR:AT5G03160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFM1" /translation="MLNTLSLSWALNSMAWRGLVYTVLILNFALVCQFLLLQPLVSAF DGKPGNAAELFERVSQSIKVKHYSEALNDLNAAIEADPAFSEAHLRRASVLRQLCRYE ESEKSYKRFLELKPGNSVAEKELSQLHQAQNALETASSLFDSGDSTKALEYLDKVVLV FSPACSKAKLLKVKLLLAAKDYSIAISETGYILKEDENNLEALLLRGRAYYYLADHDV AQRHYQKGLRLDPEHSELKKAYFGLKNLLKKTKSAEDNVNKGKLRLAAEDYKGALALD PNHLAYNVHLHLGLCKVLVKLGRGKDALNSCSEALNIDGELLEALVQQRGEAKLLTED WEGAVEDLKSAAQRSPQDMNIREALMRAEKALKMSKRKDWYKILGVSKTASVAEIKRA YKKLALQWHPDKNVDNREEAEEQFREIAAAYEVLGDEEKRSRYDRGEDIEDMGTGGGG FNPFGGGGGQHFTFTFDGGFGGFPGGGGFGFDF" CDS join(2764251..2764383,2765409..2765574,2765897..2766098, 2766185..2766345,2766447..2766540,2766754..2766966, 2767067..2767147,2767599..2767817,2768074..2768253) /locus_tag="TCM_022128" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30078.m002346" /codon_start=1 /product="Mamallian P58IPK isoform 1" /protein_id="EOY07800.1" /db_xref="TAIR:AT5G03160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFM1" /translation="MLNTLSLSWALNSMAWRGLVYTVLILNFALVCQFLLLQPLVSAF DGKPGNAAELFERVSQSIKVKHYSEALNDLNAAIEADPAFSEAHLRRASVLRQLCRYE ESEKSYKRFLELKPGNSVAEKELSQLHQAQNALETASSLFDSGDSTKALEYLDKVVLV FSPACSKAKLLKVKLLLAAKDYSIAISETGYILKEDENNLEALLLRGRAYYYLADHDV AQRHYQKGLRLDPEHSELKKAYFGLKNLLKKTKSAEDNVNKGKLRLAAEDYKGALALD PNHLAYNVHLHLGLCKVLVKLGRGKDALNSCSEALNIDGELLEALVQRGEAKLLTEDW EGAVEDLKSAAQRSPQDMNIREALMRAEKALKMSKRKDWYKILGVSKTASVAEIKRAY KKLALQWHPDKNVDNREEAEEQFREIAAAYEVLGDEEKRSRYDRGEDIEDMGTGGGGF NPFGGGGGQHFTFTFDGGFGGFPGGGGFGFDF" gene complement(2769116..2770522) /locus_tag="TCM_022129" /note="dbxref CacaoGD:Thecc1EG022129" mRNA complement(2769116..2770522) /locus_tag="TCM_022129" /product="FASCICLIN-like arabinogalactan-protein 11, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s09010.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041052t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s09010.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13358t1" CDS complement(2769312..2770055) /locus_tag="TCM_022129" /note="paralog of Thecc1EG041052t1" /codon_start=1 /product="FASCICLIN-like arabinogalactan-protein 11, putative" /protein_id="EOY07802.1" /db_xref="Phytozome:POPTR_0016s09010.1" /db_xref="TAIR:AT5G03170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9P8F7" /translation="MRKQLLLPFLSLVLFFLCTKSFAQVAPAPPIRTDNITSILEKGG QFTTFIRLLKATQVADQLNNQLSTPDPNDGLTIFAPSDNAFSSLNPGTLNTLSDREKL QLVQFHILPTLMSTTQFQTASNPLRTQAGDVKSGRFPLNVTASGNQVNITTGVVNTTV ANTVFSDRRIAVYQVDQVLLPLQIFGTTPAPAPAPAKPEKDVPVSTPKASTGDAGANS SGAIRNLKLHPMAMVSFQFALFGAIFCSL" gene 2773024..2779100 /locus_tag="TCM_022131" /note="dbxref CacaoGD:Thecc1EG022131" mRNA join(2773024..2773678,2774123..2774437,2774524..2774632, 2774721..2774814,2775476..2775563,2775694..2775777, 2776425..2776521,2776620..2776707,2776847..2776952, 2777044..2777136,2778127..2779100) /locus_tag="TCM_022131" /product="Transducin/WD40 repeat-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g36480.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s09020.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1986t3" CDS join(2773493..2773678,2774123..2774437,2774524..2774632, 2774721..2774814,2775476..2775563,2775694..2775777, 2776425..2776521,2776620..2776707,2776847..2776952, 2777044..2777136,2778127..2778525) /locus_tag="TCM_022131" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein" /protein_id="EOY07803.1" /db_xref="Phytozome:POPTR_0016s09020.1" /db_xref="TAIR:AT3G53390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JAE0" /translation="MTRDAMINTANGMISTSSSTANAQSPGLKTYFKTPEGRYKLHYE KTHPSGLLHYAHGKTVTQVTLAHLKDKPAPSTPTAPSSSFSASSGVRSAAARWLGSGN GSRALGFVGGNGGSKSISSTSRMGSLGASSLSNSMTNTNFDGKGTYLIFNVSDAIFIS DLNSQDKDPIKSIHFSNSNPVCHAFDQEAKDGHDLLIGLNSGDVYSVSLRQQLQDVGK KLVGAQHYNKDGSVNNSRCTSIAWVPGGDGAFVVAHADGNMYVYEKNKDGAGDSSFSV IKDQTQFSVAHARYSKSNPIARWHVCQGSINSIAFSFDGSYLATVGRDGYLRVFDYSK EQLVCGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSG VAFDSYWSSPNSDGTGETVMYRFGSVGQDTQLLLWDLEMDEIVVPLRRGPPGGSPTYS TGSQSSHWDNVCPLGTLQTAPSIRDVPKISPVVAHRVHTEPLSGLSFTQESVLTVCRE GHIKIWMRPGVAESQSINSETVLSTSSKDKTLLSSKVGSSSYKQ" gene complement(2779106..2784472) /locus_tag="TCM_022132" /note="dbxref CacaoGD:Thecc1EG022132" mRNA complement(join(2779106..2780055,2780193..2780272, 2780369..2780459,2780535..2780607,2780829..2781126, 2781763..2781940,2782596..2783093,2784147..2784472)) /locus_tag="TCM_022132" /product="Binding protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025673001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042042t1" /inference="similar to AA sequence:Phytozome:GSVIVT01025673001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1940t2" mRNA complement(join(2779286..2780055,2780193..2780273, 2780828..2781126,2781763..2781940,2782620..2783093, 2784147..2784433)) /locus_tag="TCM_022132" /product="RING/U-box superfamily protein, putative isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025673001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042042t2" /inference="similar to AA sequence:Phytozome:GSVIVT01025673001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1231t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1940t2" mRNA complement(join(2779286..2780055,2780193..2780272, 2780359..2780459,2780535..2780607,2780829..2781126, 2781763..2781940,2782620..2783093,2784147..2784172)) /locus_tag="TCM_022132" /product="Binding protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025673001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042042t2" /inference="similar to AA sequence:Phytozome:GSVIVT01025673001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1241t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1940t2" mRNA complement(join(2779286..2780055,2780193..2780459, 2780535..2780607,2780829..2781126,2781763..2781940, 2782620..2783093,2784147..2784172)) /locus_tag="TCM_022132" /product="Binding protein, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025673001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042042t2" /inference="similar to AA sequence:Phytozome:GSVIVT01025673001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1241t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1940t2" mRNA complement(join(2779286..2780055,2780193..2780272, 2780369..2780607,2780829..2781126,2781763..2781940, 2782620..2783093,2784147..2784172)) /locus_tag="TCM_022132" /product="Binding protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025673001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042042t1" /inference="similar to AA sequence:ricco:30078.m002343" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1241t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1940t2" CDS complement(join(2779804..2780055,2780193..2780273, 2780828..2781126,2781763..2781940,2782620..2783093, 2784147..2784248)) /locus_tag="TCM_022132" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG042042t2" /codon_start=1 /product="RING/U-box superfamily protein, putative isoform 5" /protein_id="EOY07808.1" /db_xref="Phytozome:GSVIVT01025673001" /db_xref="TAIR:AT3G09760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S0M6" /translation="MENEGGHVVKRQNGEGTSNNSNNNNTLDPPPLQRFGDSTEIIEE MPLGQHRKPDDLVLEIPPRTLEDAREDFVRIDMALTPTATPKRVNFSPMPSPIFSRFD DSPVHSSFKNKSALKSLLPKLSFKSRNTNLEIEKAAILALGGSSAEIRGKPRISRTFS LSKLFTPRMKNTSSLPVTPTTHSNPESMHGGQKGGAGPPIHRSHSVPVLNKDGSITQL DSLGGVFRVIPTTPRAVKGTILTTPNTFTKIDNDGNNDGGEDIPEEEAVCRICLTELG EGADTLKMECSCKGELALAHQDCAIKWFSIKGNKTCDVCKQEVQNLPVTLLRVQNDQA HNLRGSGPRQIEAARYRVRRKYVWIYATVQFGLVVLSAHLFYSLLHIQAVLSVLLSAF VGFGGTMCGTSILYEVSRGWRRWRAESNQQLGSQEVPQPDQPSVTMQQIQTDTHPNET ERRASESGNGN" CDS complement(join(2779804..2780055,2780193..2780272, 2780369..2780459,2780535..2780607,2780829..2781126, 2781763..2781940,2782596..2783093,2784147..2784248)) /locus_tag="TCM_022132" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042042t1" /codon_start=1 /product="Binding protein, putative isoform 1" /protein_id="EOY07804.1" /db_xref="Phytozome:GSVIVT01025673001" /db_xref="TAIR:AT3G09760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S0M6" /translation="MENEGGHVVKRQNGEGTSNNSNNNNTLDPPPLQRFGDSTEIIEE MPLGQHRKPDDLVLEIPPRTLEDAREDFVRIDMALTPTATPKRVNFSPMPSPIFSRFD DSPVHSSFKNKSALKSLLPKLSFKSRNTNLEIEKAAILALGGSSAEIRGKPRISRTFS LSKLFTPRMKNTSSLPVTPTTHSNPESMHGGQVISLLSSAKGGAGPPIHRSHSVPVLN KDGSITQLDSLGGVFRVIPTTPRAVKGTILTTPNTFTKIDNDGNNDGGEDIPEEEAVC RICLTELGEGADTLKMECSCKGELALAHQDCAIKWFSIKGNKTCDVCKQEVQNLPVTL LRVQNDQAHNLRGSGPRQIEAARYRVWQDVPILVIVSMLAYFCFLEQLLVSKMKSGAI AISLPFSCILGLLASMTSTTMVRRKYVWIYATVQFGLVVLSAHLFYSLLHIQAVLSVL LSAFVGFGGTMCGTSILYEVSRGWRRWRAESNQQLGSQEVPQPDQPSVTMQQIQTDTH PNETERRASESGNGN" CDS complement(join(2779804..2780055,2780193..2780272, 2780369..2780607,2780829..2781126,2781763..2781940, 2782620..2783063)) /locus_tag="TCM_022132" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30078.m002343; paralog of Thecc1EG042042t1" /codon_start=1 /product="Binding protein, putative isoform 3" /protein_id="EOY07806.1" /db_xref="TAIR:AT3G09760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S0M6" /translation="MPLGQHRKPDDLVLEIPPRTLEDAREDFVRIDMALTPTATPKRV NFSPMPSPIFSRFDDSPVHSSFKNKSALKSLLPKLSFKSRNTNLEIEKAAILALGGSS AEIRGKPRISRTFSLSKLFTPRMKNTSSLPVTPTTHSNPESMHGGQKGGAGPPIHRSH SVPVLNKDGSITQLDSLGGVFRVIPTTPRAVKGTILTTPNTFTKIDNDGNNDGGEDIP EEEAVCRICLTELGEGADTLKMECSCKGELALAHQDCAIKWFSIKGNKTCDVCKQEVQ NLPVTLLRVQNDQAHNLRGSGPRQIEAARYRVWQDVPILVIVSMLAYFCFLEQLLVSL AIWKCFPSFSSFLLFLKLLCTQVSKMKSGAIAISLPFSCILGLLASMTSTTMVRRKYV WIYATVQFGLVVLSAHLFYSLLHIQAVLSVLLSAFVGFGGTMCGTSILYEVSRGWRRW RAESNQQLGSQEVPQPDQPSVTMQQIQTDTHPNETERRASESGNGN" CDS complement(join(2779970..2780055,2780193..2780272, 2780359..2780459,2780535..2780607,2780829..2781126, 2781763..2781940,2782620..2783063)) /locus_tag="TCM_022132" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042042t2" /codon_start=1 /product="Binding protein, putative isoform 2" /protein_id="EOY07805.1" /db_xref="Phytozome:GSVIVT01025673001" /db_xref="TAIR:AT3G09760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S0M6" /translation="MPLGQHRKPDDLVLEIPPRTLEDAREDFVRIDMALTPTATPKRV NFSPMPSPIFSRFDDSPVHSSFKNKSALKSLLPKLSFKSRNTNLEIEKAAILALGGSS AEIRGKPRISRTFSLSKLFTPRMKNTSSLPVTPTTHSNPESMHGGQKGGAGPPIHRSH SVPVLNKDGSITQLDSLGGVFRVIPTTPRAVKGTILTTPNTFTKIDNDGNNDGGEDIP EEEAVCRICLTELGEGADTLKMECSCKGELALAHQDCAIKWFSIKGNKTCDVCKQEVQ NLPVTLLRVQNDQAHNLRGSGPRQIEAARYRVWQDVPILVIVSMLAYFCFLEQLLVSK MKSGAIAISLPFSCILGLLASMTSTTMGGINEEKICLDLCYSAIWTCGSFCSSFLLIA PHTGCSFCSAFCICWVWRNNVWNLYSL" CDS complement(join(2780292..2780459,2780535..2780607, 2780829..2781126,2781763..2781940,2782620..2783063)) /locus_tag="TCM_022132" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG042042t2" /codon_start=1 /product="Binding protein, putative isoform 4" /protein_id="EOY07807.1" /db_xref="Phytozome:GSVIVT01025673001" /db_xref="TAIR:AT3G09760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S0M6" /translation="MPLGQHRKPDDLVLEIPPRTLEDAREDFVRIDMALTPTATPKRV NFSPMPSPIFSRFDDSPVHSSFKNKSALKSLLPKLSFKSRNTNLEIEKAAILALGGSS AEIRGKPRISRTFSLSKLFTPRMKNTSSLPVTPTTHSNPESMHGGQKGGAGPPIHRSH SVPVLNKDGSITQLDSLGGVFRVIPTTPRAVKGTILTTPNTFTKIDNDGNNDGGEDIP EEEAVCRICLTELGEGADTLKMECSCKGELALAHQDCAIKWFSIKGNKTCDVCKQEVQ NLPVTLLRVQNDQAHNLRGSGPRQIEAARYRVWQDVPILVIVSMLAYFCFLEQLLVSK MKSGAIAISLPFSCILGLLASMTSTTMGGIKFVAKFSCDSFVLVNLVICLTN" mRNA complement(join(2780435..2781126,2781763..2781940, 2782620..2783093,2784147..2784433)) /locus_tag="TCM_022132" /product="Binding protein, putative isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025673001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042042t1" /inference="similar to AA sequence:Phytozome:GSVIVT01025673001" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1193t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1940t2" CDS complement(join(2780738..2781126,2781763..2781940, 2782620..2783093,2784147..2784248)) /locus_tag="TCM_022132" /note="encoded by transcript variant 6; alternatively spliced; paralog of Thecc1EG042042t1" /codon_start=1 /product="Binding protein, putative isoform 6" /protein_id="EOY07809.1" /db_xref="Phytozome:GSVIVT01025673001" /db_xref="TAIR:AT3G09760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S0M6" /translation="MENEGGHVVKRQNGEGTSNNSNNNNTLDPPPLQRFGDSTEIIEE MPLGQHRKPDDLVLEIPPRTLEDAREDFVRIDMALTPTATPKRVNFSPMPSPIFSRFD DSPVHSSFKNKSALKSLLPKLSFKSRNTNLEIEKAAILALGGSSAEIRGKPRISRTFS LSKLFTPRMKNTSSLPVTPTTHSNPESMHGGQKGGAGPPIHRSHSVPVLNKDGSITQL DSLGGVFRVIPTTPRAVKGTILTTPNTFTKIDNDGNNDGGEDIPEEEAVCRICLTELG EGADTLKMECSCKGELALAHQDCAIKWFSIKGNKTCDVCKQEVQNLPVTLLRVQNDQA HNLRGSGPRQIEAARYRQVYTAHLMHLATKWYLGSLSTSFVFFFCL" gene 2789017..2791199 /locus_tag="TCM_022133" /note="dbxref CacaoGD:Thecc1EG022133" mRNA join(2789017..2789394,2789498..2791199) /locus_tag="TCM_022133" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene09709" /inference="similar to AA sequence:ricco:30078.m002342" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.99 coverage" CDS 2789543..2790961 /locus_tag="TCM_022133" /note="dbxref ricco:30078.m002342" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07810.1" /db_xref="TAIR:AT3G53400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTB2" /translation="MDFKTLKLMIFHGSLARRVLLRAFMLAAALSIVPLLQMISGTDP EMLHTLSTSADCALRSGFSGPFIFPGTFLFSKIWGSFGPVQCKEDGNLTASVVRELMG KQMLSYNAKALCVGEGSVSAVVALRDSGFSDVTGVYRHPFFSLKQKKFVYELDYEDNS YDFVLSRDLDKVSVPALLVLEIERVLRPGGIGAMLVGISGSDPTSLIRSATPVSSLLK ASSVVHVDYVNEFTLVVFKKKLENTTYFEQYRLPADCPSITDNKAILDHMEPLVEEKP IGFEKSIAYLPKFVNVSSKQRLVYIDIGAGEHLNSNVTSWFLPSYPVDHKAFNAYFVD HDTSVILSYVKKPGINFVYYPGLAGNRATASSGNKASTDSDSVDDSDPFVEDEGFDFL LWFKDTVQYADFVVLKMNAGAVELKLLSDLFESGIICFIDELFLRCSDHMDSGGVVKG DCMDLFKALRRTGVYVHQWWGD" gene complement(2791269..2791902) /locus_tag="TCM_022134" /note="dbxref CacaoGD:Thecc1EG022134" mRNA complement(2791269..2791902) /locus_tag="TCM_022134" /product="Uncharacterized protein" /note="quality class is weak, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.39 coverage" CDS complement(2791332..2791544) /locus_tag="TCM_022134" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07811.1" /translation="MERSLTIFHPCYCGCFHHGKEYIAMSNGAVLIAKNFLALHCTGA PRAGLSEYAHVHVLRRLFILCRCWRP" gene complement(2792047..2795832) /locus_tag="TCM_022135" /note="dbxref CacaoGD:Thecc1EG022135" mRNA complement(join(2792047..2792076,2792173..2792258, 2792782..2792874,2793212..2793707,2794916..2795832)) /locus_tag="TCM_022135" /product="RING/U-box superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s13060.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s13060.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13373t1" CDS complement(join(2792196..2792258,2792782..2792874, 2793212..2793707,2794916..2795391)) /locus_tag="TCM_022135" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="RING/U-box superfamily protein isoform 1" /protein_id="EOY07812.1" /db_xref="Phytozome:POPTR_0006s13060.1" /db_xref="TAIR:AT3G09770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2HV40" /translation="MGNIGSSGVNGRRRTSGRRNHPPPPQPPPPAQPQPEIPTNRYVF AAATPYPPQYPNTNPPHYYQYPGYYPPQPPMPVPLPAPYDHHHRVGPHMEPANWSRYA CDPMMPSHPVPYIEHQKAVTIRNDVNLKKETLKLEADEENPGKFLVSFTFDATVAGSM TVIFFAKEGEDCNLTPMKESILPPVTVHFEQGLGQKFRQPSGTGIDFSMFEEAELQKV DEVDFYHLAVKAEALPVNQNGSDGNQVSGAMNSQITQAVFEKEKGEYQARVVKQILWV NGMRYELQAIYGIGNSVDNDVDANDPGKECVICLSEPRDTTVLPCRHMCMCSSCAKVL RCQTNRCPICRQPVERLLEIKDQLFVYDSSRLALDYHVSVR" mRNA complement(join(2792785..2792874,2793033..2793707, 2794916..2795242)) /locus_tag="TCM_022135" /product="RING/U-box superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s13060.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020513t4" /inference="similar to AA sequence:Phytozome:POPTR_0006s13060.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc369t3; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13373t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc378t12" CDS complement(join(2793143..2793707,2794916..2795169)) /locus_tag="TCM_022135" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG020513t4" /codon_start=1 /product="RING/U-box superfamily protein isoform 2" /protein_id="EOY07813.1" /db_xref="Phytozome:POPTR_0006s13060.1" /db_xref="TAIR:AT3G09770.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2HV40" /translation="MPVPLPAPYDHHHRVGPHMEPANWSRYACDPMMPSHPVPYIEHQ KAVTIRNDVNLKKETLKLEADEENPGKFLVSFTFDATVAGSMTVIFFAKEGEDCNLTP MKESILPPVTVHFEQGLGQKFRQPSGTGIDFSMFEEAELQKVDEVDFYHLAVKAEALP VNQNGSDGNQVSGAMNSQITQAVFEKEKGEYQARVVKQILWVNGMRYELQAIYGIGNS VDNDVDANDPGKECVICLSEPRDTTVLPCRHMVKTAASFLFISFFLSLVVCNID" gene complement(2795812..2802317) /locus_tag="TCM_022137" /note="dbxref CacaoGD:Thecc1EG022137" mRNA complement(join(2795812..2796027,2797438..2797867, 2799010..2799070,2800005..2800259,2802162..2802317)) /locus_tag="TCM_022137" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is ortholog weak, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.11 coverage" mobile_element complement(2796548..2797566) /note="source:CACAO_hAT_E410_scaffold_1 4147 5167" /mobile_element_type="transposon:TIR/hAT" CDS complement(2797462..2797731) /locus_tag="TCM_022137" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07814.1" /translation="MTIWYDILFAVNSVSKSLQSKDMCIDIAIEQLKSLSHLLFLPLT SIFLQKIHKNFVPQIRDALLKLVEVSEDPKTKSEANCLATYELEN" mobile_element complement(2797563..2797638) /note="source:CACAO_hAT_E2824_scaffold_6 418 509" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(2797627..2797851) /note="source:CACAO_hAT_E410_scaffold_1 4147 4371" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(2797848..2798361) /note="source:CACAO_hAT_E2824_scaffold_6 1 509" /mobile_element_type="transposon:TIR/hAT" gene 2802657..2808295 /locus_tag="TCM_022138" /note="dbxref CacaoGD:Thecc1EG022138" mRNA join(2802657..2803148,2803292..2803413,2803500..2803705, 2803883..2804120,2804241..2804391,2804509..2805619) /locus_tag="TCM_022138" /product="LRR receptor-like serine/threonine-protein kinase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s13040.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043124t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s13040.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.49 coverage; inference alignment:PASA:2:TSA:puevd3b021430t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1980t1" mRNA join(2802657..2803148,2803338..2803413,2803500..2803705, 2803883..2804120,2804241..2804391,2804509..2805619) /locus_tag="TCM_022138" /product="LRR receptor-like serine/threonine-protein kinase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s13040.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043124t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s13040.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:PASA:2:TSA:puevd3b021430t1a3; alternateUTRof:Thecc1EG022138t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1980t1" mRNA join(2802779..2802909,2802997..2803179,2803269..2803413, 2803489..2803705,2803883..2804120,2804241..2804406, 2804509..2805274,2808248..2808295) /locus_tag="TCM_022138" /product="LRR receptor-like serine/threonine-protein kinase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s13040.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043124t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s13040.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1980t1" CDS join(2802881..2802909,2802997..2803179,2803269..2803413, 2803489..2803705,2803883..2804120,2804241..2804406, 2804509..2804832) /locus_tag="TCM_022138" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG043124t1" /codon_start=1 /product="LRR receptor-like serine/threonine-protein kinase isoform 1" /protein_id="EOY07815.1" /db_xref="Phytozome:POPTR_0006s13040.1" /db_xref="TAIR:AT1G16670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I0H9" /translation="MYLSSCIPVDSRVHLSSGIELFWGRQSSRFPRQAKDMKLTSCFS NCFSSASETAIDRGGPGKMLGVFISFFFLLSAYTEAEEENDQNFTVFSYSELKAATHG FSASNKIGEGAFGSVYKGLLRNGIVVAVKMLSVELESMRGEREFVSEIITLSNLKHEN LVTLKGCCVDGANRFLVYNYMENNSLAQILLGGEQNRIKLGWEPRRAISLGVARGLAY LHEEAKPHIVHRDIKASNILLDQNLIPKVSDFGLSRILRDNVTHISTHVAGTLGYLAP EYAISGRLTRKTDVYSFGVLLLEIISGQTVVNYDLEHGERYLVQKVMLLEAWELYRAN SILQLVDPIVGMNYPEEEAVRFIKVGLLCAQETAKLRPEMSRAVRMLTNDIDIEGVQI SQPGLVSDLMNIKLGQKTTFPSISSKASSMESSRSPPSSYS" CDS join(2803358..2803413,2803500..2803705,2803883..2804120, 2804241..2804391,2804509..2804832) /locus_tag="TCM_022138" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG043124t1" /codon_start=1 /product="LRR receptor-like serine/threonine-protein kinase isoform 2" /protein_id="EOY07816.1" /db_xref="Phytozome:POPTR_0006s13040.1" /db_xref="TAIR:AT1G16670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I0H9" /translation="MDSLLQTRSEKVPLALSTRNGIVVAVKMLSVELESMRGEREFVS EIITLSNLKHENLVTLKGCCVDGANRFLVYNYMENNSLAQILLGGEQNRIKLGWEPRR AISLGVARGLAYLHEEAKPHIVHRDIKASNILLDQNLIPKVSDFGLSRILRDNVTHIS THVAGTLGYLAPEYAISGRLTRKTDVYSFGVLLLEIISGQTVVNYDLEHGERYLVQKA WELYRANSILQLVDPIVGMNYPEEEAVRFIKVGLLCAQETAKLRPEMSRAVRMLTNDI DIEGVQISQPGLVSDLMNIKLGQKTTFPSISSKASSMESSRSPPSSYS" CDS join(2803358..2803413,2803500..2803705,2803883..2804120, 2804241..2804391,2804509..2804832) /locus_tag="TCM_022138" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG043124t1" /codon_start=1 /product="LRR receptor-like serine/threonine-protein kinase isoform 2" /protein_id="EOY07817.1" /db_xref="Phytozome:POPTR_0006s13040.1" /db_xref="TAIR:AT1G16670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I0H9" /translation="MDSLLQTRSEKVPLALSTRNGIVVAVKMLSVELESMRGEREFVS EIITLSNLKHENLVTLKGCCVDGANRFLVYNYMENNSLAQILLGGEQNRIKLGWEPRR AISLGVARGLAYLHEEAKPHIVHRDIKASNILLDQNLIPKVSDFGLSRILRDNVTHIS THVAGTLGYLAPEYAISGRLTRKTDVYSFGVLLLEIISGQTVVNYDLEHGERYLVQKA WELYRANSILQLVDPIVGMNYPEEEAVRFIKVGLLCAQETAKLRPEMSRAVRMLTNDI DIEGVQISQPGLVSDLMNIKLGQKTTFPSISSKASSMESSRSPPSSYS" gene complement(2804863..2805852) /locus_tag="TCM_022139" /note="dbxref CacaoGD:Thecc1EG022139" mRNA complement(join(2804863..2804887,2805218..2805852)) /locus_tag="TCM_022139" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc760t5_C2" gene complement(2805118..2815210) /locus_tag="TCM_022140" /note="dbxref CacaoGD:Thecc1EG022140" mRNA complement(join(2805118..2805180,2808923..2812011, 2812160..2812430,2815077..2815210)) /locus_tag="TCM_022140" /product="CRINKLY4 related 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s09060.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043122t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s09060.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1953t2" CDS complement(2805317..2805577) /locus_tag="TCM_022139" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07818.1" /translation="MHILYAWLPVCHLQSPSRVRWPSWMACEEPCMHSAVLTMEGVFQ SMVNLMSNRSWDFHNKISFLVINSENFAGPKVTGKIFQELLD" CDS complement(2809095..2811419) /locus_tag="TCM_022140" /note="paralog of Thecc1EG043122t1" /codon_start=1 /product="CRINKLY4 related 1" /protein_id="EOY07819.1" /db_xref="Phytozome:POPTR_0016s09060.1" /db_xref="TAIR:AT3G09780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80963" /translation="MQILKTTMFLLLLLLISAISASGFGSMGPISAAFGEDGFFCAID ASGKQEVICWSKNSSSASSSSSATSSTSSSLSSSDFASQAPQMEALSGGEGFLCGILA NTSQVFCWSLMGSGTDLVPSNYKTRAYSYIAAGKNHVCGIRGAYYSDHESGIVDCWEI VRSSNNTLSSKQSSLFYDQSVSNLVFKKIISGEGFSCGGIRDGGLVCWGPNAEFLGVS NVSGSFLALASAKGSICGILDSSGELKCWGDSHSFSNPPVGIRFVSLTAGAHHFCGIR EDNHGVECWGSFNFSSVPRGSGFMAFASSDYTTCGIREDDLVLDCWSGNASLPPDYNP PLELCSPGLCQPASCGEAEFAFNASILNEPDLTSLCVRKDLQICSFCGSNCSEGFFLS SSCTRNADRICTACSLCQNSSCRDVCGLQSSLEKHWHHLLRLVIIIGSCASGFLLVLL SWCFLPRVFTTKREEGTKKQFKSCIGKPELDADTTADSFPPLSITPFPGTAQIFRLSE LKDATNGFKEFNELGRGSYGFVYKAVLADGRQVAVKRANAATIIHGNNRDFEMELEIL CNVRHCNIVNLIGYCSEMGERLLVYEYMPHGTLHDHLHGGLCPLSWSLRLKIALQTAR GLEYLHKEVVPPIVHRHVKTSNILLDSEWGARIADFGLLTSIERDLDLSGDMKSDVYS FGIVLLEILSGRKAFDRDYTPPSIIDWALPLIKQGKAAAIIDRFVTLPRNVEPLLKLA DVAELAVREDPSERPTMSDSVNLLQQIVKDGLVL" gene 2817165..2819711 /locus_tag="TCM_022141" /note="dbxref CacaoGD:Thecc1EG022141" mRNA join(2817165..2817289,2817472..2817927,2818217..2818226, 2819273..2819711) /locus_tag="TCM_022141" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29687.m000598" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022145t1" /note="quality class is medium-utrpoor, express is medium, homology is paralog medium, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.61 coverage" CDS join(2817820..2817927,2818217..2818226,2819273..2819436) /locus_tag="TCM_022141" /note="paralog of Thecc1EG022145t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07820.1" /translation="MDDLAKDFTDGSKIPQLVPKIDYSGGISSHPLLGLQIAANFGWG RPIFMRPANIVHEGKAYILPSSNKDGSLTLVTRLEISHMKLFGKLLYEL" mobile_element complement(2827228..2827247) /note="source:CACAO_M_S_E66514_F257_scaffold_5 771 791" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 2827248..2827298 /note="source:INTACT1608F_F65_scaffold_10-int 1 50" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2827296..2827881 /note="source:CACAO_M_S_E5285_F300_scaffold_1 17251 17862" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 2828396..2829336 /note="source:INTACT1608F_F65_scaffold_10-int 395 1327" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2828521..2833232 /note="source:INTACT566_F257_scaffold_7-int 484 5222" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(2833631..2835292) /locus_tag="TCM_022143" /note="dbxref CacaoGD:Thecc1EG022143" mRNA complement(join(2833631..2834069,2834184..2834462, 2835111..2835292)) /locus_tag="TCM_022143" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s01875.1.12" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010352t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(2833735..2834069,2834184..2834361)) /locus_tag="TCM_022143" /note="paralog of Thecc1EG010352t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07821.1" /translation="MVKLQVAWWAHAKWPNMNVSVSELSRKPNIGLQPKKIKTAKSDG IWQLSSKGMVKFNVDVEILAIKKAFQMVAASRWATTNCVIVESDSENAVKWANEPTTA PWKHKTTTMLLEFFKTQLKGWNFLKIPRAVNGAAIYLAKAIVERNDEFLWVLAYDGED YTIPHEMLEH" mobile_element 2834442..2834747 /note="source:INTACT566_F257_scaffold_7-int 5233 5536" /mobile_element_type="retrotransposon:LTR/Copia" gene 2835467..2849959 /locus_tag="TCM_022144" /note="dbxref CacaoGD:Thecc1EG022144" mRNA join(2835467..2835928,2836106..2836528,2836931..2836946, 2837147..2837968,2840713..2840792,2845089..2845240, 2846181..2846832,2849902..2849959) /locus_tag="TCM_022144" /product="Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0018s11370.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022145t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s03440.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1245t8" CDS join(2836145..2836528,2836931..2836946,2837147..2837968, 2840713..2840792,2845089..2845240,2846181..2846826) /locus_tag="TCM_022144" /note="paralog of Thecc1EG022145t1" /codon_start=1 /product="Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase" /protein_id="EOY07822.1" /db_xref="Phytozome:POPTR_0001s03440.1" /db_xref="TAIR:AT5G48930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FI78" /translation="MVCPTEETPSRRLWVSNMDLLMTRYHISTVYFYKPNGSSNFFDT KVLKESLSKILVPFYPVAGRLGYDENGRLEIVCNAEGVLFIEANTTSIMDDLVRDFAD SSKTPQLVPKIDYSGGISSYSLLGLQLDTNSFGLTRHEACTLVLRHSWIVTLLRARNP PTPTFRHIEFEPSPSLKTIVLTPKSQPSPESSIMSMFKITADHLKALKAKVNENSNSN TKYSTYSILTAHIWRCATKARDLLRDQELKLPIPIDGRNRLRPPFPPGYFGNVIFHAA PVTLAGDLLSESFIDTIKRIHEILKVMDDEYLRSSIDYIEKAPDIKSVGRGPQIMRCP NLSINSWMWLPIHDADFGWGRPIFVRPVNIVHEGKLYILPSPTKDGSLTLVTRLETSH MKLFGKLLYEFWQHKGGEQSTLVKVQRLCLETGNRSTSTPRTENLKILMASKCSKVKS GKGVAAEEEDILDNVVTYLVKLMDQIENMDKDMRSLPNVKLMITYCGQWVDDTYKGGE TRVRGVGSEHGIQHSNHLYQWQSRLTYPYEFEQPDTHMRCLQMMSAQFRSECASNEIH GTLQQMQPWLENVVGPLSFSNDIVMVMSDDDASYQIEDDVDENDMADWNDKLHDDYVN GHDECSEDDKGEHNNISDCNHADSSTGHATTVVLEEVQYDDHATTIELEDVEGADPIY DNPITLQNCIRSPDDND" mobile_element 2838973..2842276 /note="source:CACAO_M_E34384_F82_scaffold_5 1 3304" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(2842703..2843290) /note="source:CACAO_M_S_E5285_F300_scaffold_1 17231 17859" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 2843364..2843991 /note="source:CACAO_Again_on_E27_scaffold_1 183 919" /mobile_element_type="transposon:TIR/hAT" mobile_element 2843971..2843991 /note="source:CACAO_PIF_E119_scaffold_3 6763 6887" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(2843992..2844096) /note="source:CACAO_Mutator_E592_scaffold_3 20258 20362" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(2844097..2844850) /note="source:CACAO_Mutator_E592_scaffold_3 19616 20361" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(2845260..2846276) /note="source:scaffold_8_CACTA_0867 14005 15223" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2846274..2849081) /note="source:CACAO_Mutator_E592_scaffold_3 13246 16109" /mobile_element_type="transposon:TIR/Mutator" gene 2849883..2853530 /locus_tag="TCM_022145" /note="dbxref CacaoGD:Thecc1EG022145" mRNA join(2849883..2850328,2850513..2850933,2852367..2853530) /locus_tag="TCM_022145" /product="Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0018s11370.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022149t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s03440.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1245t8" CDS join(2850523..2850933,2852367..2853269) /locus_tag="TCM_022145" /note="paralog of Thecc1EG022149t1" /codon_start=1 /product="Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase" /protein_id="EOY07823.1" /db_xref="Phytozome:POPTR_0001s03440.1" /db_xref="TAIR:AT5G48930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IMC6" /translation="MEIAVKESTIVCPAEETPNRRLWVSNFDLVMIMYHISTVYFYKP NGSTNIFDTKVLKESLSKILVPFYPIAGRLGYDENGRLEIICNAKGVLFTEAESSSIM DDLVQDFTDGSKVPQLVPKIDYSGGISSYPLLGLQVTTFKCGGISLGVAVQHTLLDGS SGLHFINSWANTVGGLSPSISPFLDRTLLRARNPPTPKFHHVEFEPSPSLQTMFSTSE SQQSPKPSIVSVFKITTDQLNTLKAKVNESSNSNTKYSTYSILTAHIWRCATKARDLL EDQQLKLTMPVDGRNRLHPPLPPGYFGNVIVMAALVALSGDLLSESFIDTVKRIHKIL KEMDDEYLRSSIDYIEKAPDINVIRRGPQTMRCPNLSVNSWIWLPIHDADFGWGRPIF MRPANIVHEGKVYILPSPTKDGSVTLVTRLETSHMKLFGKLLYEF" gene complement(2857088..2858335) /locus_tag="TCM_022146" /note="dbxref CacaoGD:Thecc1EG022146" mRNA complement(join(2857088..2857452,2857560..2857667, 2857812..2857959,2858066..2858335)) /locus_tag="TCM_022146" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.95 coverage" CDS complement(join(2857345..2857452,2857560..2857667, 2857812..2857959,2858066..2858166)) /locus_tag="TCM_022146" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07824.1" /translation="MATQAPNSTPTADGTKTPNPTLLLKRYINSLFSLLLVFRFPPSI TTVPPPLYTRFLGFGVGMLHYPARREFFASSRVREVPGKVSCFSVSFGTYLQCAIKVK KNGKETGRALHRGKNQRGHLEGNDAGNDAEETSETEKPEETSAVDVKERLKK" mobile_element 2857678..2858076 /note="source:CACAO_Mutator_E1149_scaffold_5 4063 4507" /mobile_element_type="transposon:TIR/Mutator" mobile_element 2858594..2858651 /note="source:INTACT60_F127_scaffold_9-int 16069 16131" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2858890..2858901 /note="source:INTACT375F_F353_scaffold_3-int 1507 1601" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2858902..2858984 /note="source:CACAO_Mutator_E1149_scaffold_5 5915 5996" /mobile_element_type="transposon:TIR/Mutator" mobile_element 2860521..2861473 /note="source:scaffold_10_CACTA_0130 6253 7200" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2861484..2863761) /note="source:INTACT52F_F339_scaffold_1-int 1 2274" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2863762..2864435 /note="source:scaffold_10_CACTA_0130 8875 9576" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2864434..2864726 /note="source:scaffold_10_CACTA_0130 6252 6544" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2864750..2867642 /note="source:INTACT375F_F353_scaffold_3-int 75 2861" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2867640..2870601 /note="source:scaffold_10_CACTA_0130 6541 9607" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2870717..2871545 /note="source:CACAO_M_S_E52014_F2_scaffold_5 1 829" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(2871328..2872491) /locus_tag="TCM_022148" /note="dbxref CacaoGD:Thecc1EG022148" mRNA complement(join(2871328..2871797,2871967..2872012, 2872136..2872251,2872362..2872491)) /locus_tag="TCM_022148" /product="Aquaporin-like superfamily protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022154t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s12980.1" /note="quality class is strong-expresste, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.81 coverage" CDS complement(join(2871693..2871797,2871967..2872012, 2872136..2872251,2872362..2872466)) /locus_tag="TCM_022148" /note="paralog of Thecc1EG022154t1" /codon_start=1 /product="Aquaporin-like superfamily protein, putative" /protein_id="EOY07825.1" /db_xref="Phytozome:POPTR_0006s12980.1" /db_xref="TAIR:AT2G37180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P43286" /translation="MVHFSTILIIGTGINPARSFGATVMYKQDKPLNDHWIFCVRPFI GATFVAIYHQYILRAAAAKAIGSFRSSSAMCHTSLYHLALVFNVPGHPKGNDAGNDAE ETSETKKPEETSAVDVKERLK" gene 2873898..2879951 /locus_tag="TCM_022149" /note="dbxref CacaoGD:Thecc1EG022149" mRNA join(2873898..2874234,2874375..2874796,2875393..2876864, 2879849..2879951) /locus_tag="TCM_022149" /product="Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0018s11370.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022145t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s03440.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1970t1" CDS join(2874386..2874796,2875393..2876295) /locus_tag="TCM_022149" /note="paralog of Thecc1EG022145t1" /codon_start=1 /product="Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase" /protein_id="EOY07826.1" /db_xref="Phytozome:POPTR_0001s03440.1" /db_xref="TAIR:AT5G48930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IMC6" /translation="MEVTMKESTMVCPAEETPNQRLWVSNLDLVVTRYHICTVYFYKP NGSSDFFDTKVLKESLGKILVPFYPIAGRLGYDENGRLEIICNAKGVLFIEAETTSIM DDLVKEFKDDSEGPQLVPKIDYSGGISSYPLLGLQVTTFKCGGISLGVSTQHTMVDGS SGLHFINSWANTVRGCSPNIAPFLDRTLLRARHPPIPKFRHVEFEPSPSLQTMFSTSE CQPSPKPSIVSIFTITADKLNALKAKVNGNSNSNTKYSTYSILTAHIWRCATKARDLL EDQQLKLNMPVDGRNRLHPPFPPGYIGNVIFMAALVALAGELLSESFIDTVKRIHKIL KEMDDEYLRSEIDYIEKAPDIEAIRRGSQTMRCPSLVINSWILLPIHEADFGWGRPIF MRPANIVHEGIVYILPSPTKDGSLTLVTRLETSHMKLFGKLLYEF" mobile_element 2877045..2877178 /note="source:CACAO_Mutator_E1998_scaffold_9 10705 10848" /mobile_element_type="transposon:TIR/Mutator" gene 2877192..2882610 /locus_tag="TCM_022150" /note="dbxref CacaoGD:Thecc1EG022150" mRNA join(2877192..2877236,2879947..2880244,2880422..2880843, 2881433..2881577,2881709..2882610) /locus_tag="TCM_022150" /product="Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase" /inference="alignment:exonerate- protein:2:TAIR:AT5G57840.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022145t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s03440.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g1970t2" mobile_element 2878190..2878647 /note="source:CACAO_Mutator_E1888_scaffold_9 7432 7798" /mobile_element_type="transposon:TIR/Mutator" CDS join(2880433..2880843,2881433..2881577,2881709..2882334) /locus_tag="TCM_022150" /note="paralog of Thecc1EG022145t1" /codon_start=1 /product="Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase" /protein_id="EOY07827.1" /db_xref="Phytozome:POPTR_0001s03440.1" /db_xref="TAIR:AT5G48930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IMC6" /translation="MEIAVKESTMVCPAEETPNRRLWVSNLDLVMTIYHVPTVYFYRP NGSSDFFDTKVLKESLGKILVPFYPIAGRLGYDENGRLEIICNAKGVLFIEAETTSIM DDLVQDFTDGSKVPQLAPKIDYSGGISSYPLLGLQVITFKCGGISLGVSCQHTLVDGS SGLHFINSRANTVRGLSPSIAPCLDLFRITADQLNTLKAKVNENSNSNTKYSTYSILT AHIWRCATKARDLLEDQQLKLNMPIDGRNRLHPSLPPGYFGNVISMAALFTLAGDLLS ESFIDTVKRIHKILKEMHNEYLRSAIDYIEIAPDIEAIRRGPQTFRCPNLLINSWKWL PIHDSDFGWGCPIFMRPANIVHEGKVCMLPSPTKDGSLTLVTRLETSHMKLFGKLLYE F" gene complement(2884184..2886727) /locus_tag="TCM_022151" /note="dbxref CacaoGD:Thecc1EG022151" mRNA complement(join(2884184..2884586,2884824..2884924, 2885402..2885495,2886466..2886727)) /locus_tag="TCM_022151" /product="Vacuolar membrane ATPase 10, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s22880.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043133t1" /inference="similar to AA sequence:Phytozome:GSVIVT01025678001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1548t2" CDS complement(join(2884443..2884586,2884824..2884924, 2885402..2885495,2886466..2886639)) /locus_tag="TCM_022151" /note="paralog of Thecc1EG043133t1" /codon_start=1 /product="Vacuolar membrane ATPase 10, putative" /protein_id="EOY07828.1" /db_xref="Phytozome:GSVIVT01025678001" /db_xref="TAIR:AT3G01390.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O82628" /translation="MEALPTNYKSPRGNQNDMVYLGSLCDANSLFSSLASVKQASFSF ALKSSDKNLDTLFKEIMEASRGQGGIQQLLAAEQEAQHIVNAARNAKMTRLKQAKEEA EKEIAEHRAQAEEEFQRKVAESSGDSGANVKRLEQETEAKIHHLNLEAARISDDVVQM LLKHVTTVKN" gene complement(2886838..2888747) /locus_tag="TCM_022153" /note="dbxref CacaoGD:Thecc1EG022153" mRNA complement(join(2886838..2888121,2888209..2888747)) /locus_tag="TCM_022153" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 0.99 coverage" CDS complement(join(2887301..2888121,2888209..2888620)) /locus_tag="TCM_022153" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07829.1" /translation="MPKQASKVCLFLSIVFSILANHSISATTSEQSYAPAASESENKS LSLESLPFLPNPDSPTTEAEAVAETLSPTYFSFPPSSNIPDVETKPNETLSQENVSNL SNADEPSLETQGEQKLFQDLASPPSVDDPTLESNKENTSLPPSKADPPAVETKESEDL FQENTSLPPSPSVDTPAVETKEDENVSQENLFSAENKDNEIPSQENTSVPSSYSPNVD ATSLEENKSPAVAPAYVDNTPALDTSDDGSFTQENHSPVTYVNTPAPETKGEEDITSQ DYSSVTPPNTESQNPENVPELNDYSSLPKTAVPAPSEAVSFPESDPTIQMTPSNDETF GLAPTSHQTILPFNYRAEDEPVEPYEDEDSWNGVNGAVAGVLVGACVIGVGGFIYQKR KNDNIRAQYTCLAKKGGV" gene complement(2889612..2891604) /locus_tag="TCM_022154" /note="dbxref CacaoGD:Thecc1EG022154" mRNA complement(join(2889612..2890100,2890211..2890351, 2890582..2890877,2891206..2891604)) /locus_tag="TCM_022154" /product="Plasma membrane intrinsic protein 2" /inference="alignment:exonerate- protein:2:ricco:30078.m002337" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042053t1" /inference="similar to AA sequence:ricco:30078.m002337" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13625t1" CDS complement(join(2889981..2890100,2890211..2890351, 2890582..2890877,2891206..2891500)) /locus_tag="TCM_022154" /note="dbxref ricco:30078.m002337; paralog of Thecc1EG042053t1" /codon_start=1 /product="Plasma membrane intrinsic protein 2" /protein_id="EOY07830.1" /db_xref="TAIR:AT2G37170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P43286" /translation="MAKDIEVGGQFQAKDYHDPPPAPLVDAEELTKWSFYRAIIAEFI ATLLFLYITVLTVIGYKSQIDKGGDECGGVGILGIAWAFGGMIFILVYCTAGISGGHI NPAVTFGLFLARKVSLVRAILYMAAQCLGAICGCGLVKAFQKSYYNRYGGGANSLADG YSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPI TGTGINPARSFGAAVMYNQDKPWDDQWIFWVGPFIGAAIAAIYHQYILRAAAAKALGS FRSSSAM" gene complement(2892710..2893317) /locus_tag="TCM_022155" /note="dbxref CacaoGD:Thecc1EG022155" mRNA complement(2892710..2893317) /locus_tag="TCM_022155" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.35 coverage" CDS complement(2892957..2893184) /locus_tag="TCM_022155" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07831.1" /translation="MIGGGCLKYNVARQEWLSQSAAVVGGTKLNWTVVLKGTLMSRYT NLGTRTVTPRHTISCDSCCPNTALEGMVPSD" mobile_element 2893817..2893967 /note="source:CACAO_PIF_E119_scaffold_3 4506 4662" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(2896043..2899207) /locus_tag="TCM_022156" /note="dbxref CacaoGD:Thecc1EG022156" mRNA complement(join(2896043..2896691,2897820..2897845, 2897976..2898519,2898657..2899207)) /locus_tag="TCM_022156" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene09726" /note="quality class is medium-utrpoor, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.80 coverage" CDS complement(join(2896542..2896691,2897820..2897845, 2897976..2898078)) /locus_tag="TCM_022156" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07832.1" /translation="MKLFLLKPSQGRSIRKLDDQLHHGSLYSRAQSQINLQAIALIAA SLMAKGSRKMYNWIEVAPAPIIYPQKPSNSPGLETIVEDVAEEYDDNS" gene complement(2899865..2900869) /locus_tag="TCM_022157" /note="dbxref CacaoGD:Thecc1EG022157" mRNA complement(2899865..2900869) /locus_tag="TCM_022157" /product="Ribosomal protein L11 family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma11g20570.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042055t1" /inference="similar to AA sequence:Phytozome:Glyma11g20570.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc6589t1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc2739t1" CDS complement(2900304..2900804) /locus_tag="TCM_022157" /note="paralog of Thecc1EG042055t1" /codon_start=1 /product="Ribosomal protein L11 family protein" /protein_id="EOY07833.1" /db_xref="Phytozome:Glyma11g20570.1" /db_xref="TAIR:AT5G60670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LFH5" /translation="MPPKFDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGE DIAKETAKDWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKTKNIKHN GNISLDDVIEIAKVMRPRSMAKDLRGTVKEILGTCVSVGCMVDGKDPKDLQEEISEGE VDVPLE" mobile_element 2901099..2901180 /note="source:CACAO_Helitron_S_E26_scaffold_3 1 80" /mobile_element_type="transposon:Helitron" gene 2904272..2905431 /locus_tag="TCM_022158" /note="dbxref CacaoGD:Thecc1EG022158" mRNA join(2904272..2905058,2905374..2905431) /locus_tag="TCM_022158" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s12970.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s09110.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2018t1" CDS 2904516..2905037 /locus_tag="TCM_022158" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07834.1" /db_xref="Phytozome:POPTR_0016s09110.1" /db_xref="TAIR:AT5G03230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTB8" /translation="MASRKIFFGSKPSYIYPTMELDDGNVNHPSSDHHNHLEFDEADV WNSNESTTTTLDAKKPLPTSRTSSKKLLRKMEVSDRRSQMASASLPVNIPDWSKILKD EYREHGKSDEDVEDDDDDVDHDHDGRVPPHEYLARRRGASFSVHEGIGRTLKGRDLRR VRNAIWKKTGFED" mobile_element 2906990..2907707 /note="source:scaffold_4_CACTA_0482 16800 17504" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2908153..2908295 /note="source:CACAO_Mariner_E220_scaffold_9 8960 9108" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene 2908945..2911422 /locus_tag="TCM_022159" /note="dbxref CacaoGD:Thecc1EG022159" mRNA join(2908945..2909148,2909305..2909416,2910431..2910499, 2910932..2911422) /locus_tag="TCM_022159" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30078.m002333" /inference="similar to AA sequence:ricco:30078.m002333" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g02401t00001_C2" CDS join(2909021..2909148,2909305..2909416,2910431..2910499, 2910932..2911012) /locus_tag="TCM_022159" /note="dbxref ricco:30078.m002333" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07835.1" /db_xref="TAIR:AT2G37195.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q52K99" /translation="MVGRERRRILVGLAVAIFLGVAVYFRLWTIDYSVSSDDAELLRR QFDIANREAMDESAEWRLRFDEEADKASKCAKELEEIKESTEKKEDSTSSNEKLAMLQ KENAALLKQVEMLKNELEAEKRRCHSE" gene complement(2911872..2913007) /locus_tag="TCM_022160" /note="dbxref CacaoGD:Thecc1EG022160" mRNA complement(join(2911872..2912335,2912658..2912714, 2912911..2913007)) /locus_tag="TCM_022160" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS complement(join(2912177..2912335,2912658..2912714, 2912911..2912982)) /locus_tag="TCM_022160" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07836.1" /translation="MSTEEEEENRLYQCLRKYQKIVKQFDELVEMMDVRARPPKRRRN TRGSSGSIDPPSANQPDNGEAFVQTITRFLHELKSNPTTDPDSSTSTRDRE" gene complement(2914462..2916927) /locus_tag="TCM_022161" /note="dbxref CacaoGD:Thecc1EG022161" mRNA complement(join(2914462..2914855,2915593..2915725, 2916604..2916927)) /locus_tag="TCM_022161" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30078.m002331" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042063t1" /inference="similar to AA sequence:ricco:30078.m002331" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13378t1" CDS complement(join(2914664..2914855,2915593..2915725, 2916604..2916815)) /locus_tag="TCM_022161" /note="dbxref ricco:30078.m002331; paralog of Thecc1EG042063t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07837.1" /db_xref="TAIR:AT2G37200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFN3" /translation="MNASRPAVHPVEAPPLTDAAVHHPRVRMKDVQGMPGTKGGLFLR LSQFMFAIISVSVMATTNDFRSATAFCYLVLAVGLQSLWSLSLAFVDIYALLVKRSLR NNIVIRLFTIGDGITSTLTFAAACASAGITVLIGNDLDKCAMNHCTKFETATAMAFIS WFAMSPSFLLNFWSLASQ" gene complement(2922465..2926759) /locus_tag="TCM_022163" /note="dbxref CacaoGD:Thecc1EG022163" mRNA complement(join(2922465..2923125,2923245..2924164, 2925166..2926346,2926446..2926759)) /locus_tag="TCM_022163" /product="Auxin response factor 19" /inference="alignment:exonerate- protein:2:ricco:30078.m002329" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042067t2" /inference="similar to AA sequence:frave:gene09733" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc895t5" CDS complement(join(2923035..2923125,2923245..2924164, 2925166..2926284)) /locus_tag="TCM_022163" /note="dbxref frave:gene09733; paralog of Thecc1EG042067t2" /codon_start=1 /product="Auxin response factor 19" /protein_id="EOY07838.1" /db_xref="TAIR:AT4G30080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D9HNU6" /translation="MITFMDSKEKLKEMEKCLDSQLWHACAGGMVQMPSVNAKVFYFP QGHAEHACGPVDFRNCPRIPAYVLCRVASVKFMADPETDEVFAKIGLIPVSTNDPDFE DDGIGSIHGNETQEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQT ILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCIG IRRAKRCIGGGPESSSGWNATGGNCVVPYGGFSAFLREDESKLMRNGSTNGLNSNSNL MGKRKVRPEQVIEAATLAANGQPFEVVYYPRASTPEFCVKASLVKAALQIRWCSGMRF KMAFETEDSSRISWFMGTISSVQVADPLRWADSPWRLLQVTWDEPDLLQNVKRVSPWL VELVSNMPAIHLSPFSPPRKKLRLPQHPDFPLDSQLPMPTFSGNLLGPSSPFGCLPDH TPAGMQGARHAYYGLSLSDLHLKKLQSGLFPAGFPPPDHAATPNRTSNGGPIIQKPSM SENVSCVLTMAHSTQNCKKTDDAKTPQLVLFGQPILTEQQISLSCSADTVSPVLTGNS SSEGNVDKMANFSDGSGSALHQQGLPERSSCEGFPWYKDNRQEAETNLETGHCKVFME AEDVGRTLDLSFLGSYDELYRKLADMFGIENSETLSHVLYRDVTGAVKHIGDEPFSDF MKTARRLTILMDSSSDNVGEYKGRNKH" gene complement(2926696..2931977) /locus_tag="TCM_022164" /note="dbxref CacaoGD:Thecc1EG022164" mRNA complement(join(2926696..2927357,2928771..2928834, 2929031..2929154,2929735..2930428,2931885..2931977)) /locus_tag="TCM_022164" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.29 coverage" CDS complement(join(2927332..2927357,2928771..2928834, 2929031..2929154,2929735..2929850)) /locus_tag="TCM_022164" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07839.1" /translation="MDLKLTPFPSLSRATCRTVTEEHDGNYETWCNLQYLEYWINSMG SRITLDSVLLPKWGTSEWKVSLIFLLSVSSELPLLGITEKEGKVSPQASPSPDQQELV CAFWTLA" mobile_element 2934297..2934661 /note="source:scaffold_8_CACTA_0858 14209 14567" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(2934894..2934981) /note="source:scaffold_7_CACTA_0795 2842 2932" /mobile_element_type="transposon:TIR/CACTA" mobile_element 2935952..2936647 /note="source:CACAO_Again_on_S_E228_scaffold_7 3 730" /mobile_element_type="transposon:TIR/hAT" mobile_element 2936665..2936996 /note="source:CACAO_on_SS_E42_scaffold_2 24210 24541" /mobile_element_type="transposon:TIR/Mutator" gene 2938316..2941736 /locus_tag="TCM_022165" /note="dbxref CacaoGD:Thecc1EG022165" mRNA join(2938316..2938474,2939099..2939168,2939318..2940538, 2940752..2941736) /locus_tag="TCM_022165" /product="Phototropic-responsive NPH3 family protein" /inference="alignment:exonerate- protein:2:ricco:30078.m002328" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043164t1" /inference="similar to AA sequence:ricco:30078.m002328" /note="quality class is strong, express is none, homology is ortholog strong, intron is none, protein is complete" CDS join(2938416..2938474,2939099..2939168,2939318..2940538, 2940752..2941297) /locus_tag="TCM_022165" /note="dbxref ricco:30078.m002328; paralog of Thecc1EG043164t1" /codon_start=1 /product="Phototropic-responsive NPH3 family protein" /protein_id="EOY07840.1" /db_xref="TAIR:AT5G03250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LYW0" /translation="MAFLRLGSKSEAFHREGHSWICTSGLPSDVSINIGEMSFHLHKF PLLSRSGLLSKLIEESSSGDGSSFSLRLNDIPGGAKAFELISKFCYGVKIELTALNVV SIRCAAEYLQMTDDYGDGNLVMQTESFLNEVLGNWADSIRALETCEEVLPYAEELHIV SRCIDSLAMKACADPSLFNWPLPGRVTKQSPENIGLWNGISTATKTQPTGEDWWYEDV SFLSLPLYKRLILAIESRGMRPENIAASVVHYARRYLPLMNRQSSFNDANHVNPGTTI SNPSEADQRALLEEIVGLLPNKKGVTSSKFLIKLLRTAMVLHASPSCKENLEKRVGAQ LDQALLVDLLIPNMGYSETLYDIDCVQRILDHFMLVEQAAAITTPPCIVEEAQLMNGS DSLTPMTMVATLMDGFLAEVAPDVNFKLPKFEALAATIPNYARPLDDGLYHAIDVYLK AHPWITDLEREQLCRLMNCQKLSLEASTHAAQNERLPLRVIVQVLFFEQLRLRTSISS WFFVSDNLENSQNPDGNIGLLKNDGSYTMNSAQDCATGGQDDVKHRVSELEKECLSMK EELQKLVKTKRSWRNFTRRLGFNKKSHSCCPKGSKPTNLRAPPSSMNRQQNYENIEVV PGSLKVN" gene complement(2942068..2942792) /locus_tag="TCM_022166" /note="dbxref CacaoGD:Thecc1EG022166" mRNA complement(join(2942068..2942226,2942410..2942792)) /locus_tag="TCM_022166" /product="Laccase 11" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033501001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006868t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033501001" /note="quality class is strong, express is none, homology is ortholog strong, intron is none, protein is complete" CDS complement(join(2942097..2942226,2942410..2942729)) /locus_tag="TCM_022166" /note="paralog of Thecc1EG006868t1" /codon_start=1 /product="Laccase 11" /protein_id="EOY07841.1" /db_xref="Phytozome:GSVIVT01033501001" /db_xref="TAIR:AT5G03260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TIE4" /translation="MNNITFVMPKIGLLQAHYFNIKEVFRTNFPDRPPVQFNYTGAPL TANRGTSLGTGLSKVAFNSTIELVLQDTNLLTVESHPFHLHGFNIFIVGSGVGNFNLS KDPANVWFMHCHLELHTMWGLKMAFVVENGKSPEESIIPPPKDLAPY" gene complement(2942847..2948424) /locus_tag="TCM_022167" /note="dbxref CacaoGD:Thecc1EG022167" mRNA complement(join(2942847..2943938,2944023..2944193, 2944590..2944756,2944873..2945024,2945136..2945430, 2947999..2948424)) /locus_tag="TCM_022167" /product="Laccase 11, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033501001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000357t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033501001" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.30 coverage" mobile_element complement(2942924..2943868) /note="source:INTACT384F_F20_scaffold_3-int 11665 12580" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(2943832..2943938,2944023..2944193, 2944590..2944756,2944873..2945024,2945136..2945243)) /locus_tag="TCM_022167" /note="paralog of Thecc1EG000357t1" /codon_start=1 /product="Laccase 11, putative" /protein_id="EOY07842.1" /db_xref="Phytozome:GSVIVT01033501001" /db_xref="TAIR:AT5G03260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TIE4" /translation="MAMHLDSYLGSLSLIFFFAWFLTSPAEAAMKKYQFDIKVKNVNR LCHAKPIVTVNGRFPGPTIFVREGDRVLVNVTNHAQYNMSSHWHGLKQFRNGWADGPA YITQCPIKTEHSYTYNFNVTGQRGTLWWHAHILWLRATIYDTLAMEVEAGKTYLLRII NVVLNDELFFAIAGYNMTVVEIDAIYTKPFTTRVILIAPVPVDNKIVTAILQYKGIPN TVLPSVDTRFWLILLL" mobile_element complement(2946005..2947152) /note="source:CACAO_PIF_E144_scaffold_10 1203 2173" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 2949515..2958427 /note="source:scaffold_5_CACTA_0581 1 8913" /mobile_element_type="transposon:TIR/CACTA" gene complement(2949700..2954664) /locus_tag="TCM_022168" /note="dbxref CacaoGD:Thecc1EG022168" mRNA complement(join(2949700..2950113,2950582..2950725, 2950820..2950890,2952534..2952633,2953310..2953340, 2953506..2953603,2953924..2953968,2954325..2954664)) /locus_tag="TCM_022168" /product="Lysine decarboxylase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400037384" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042079t2" /inference="similar to AA sequence:Phytozome:POPTR_0006s12920.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2004t3" mRNA complement(join(2949700..2950113,2950582..2950725, 2950820..2950890,2952534..2952633,2953310..2953340, 2953506..2953603,2954325..2954658)) /locus_tag="TCM_022168" /product="Lysine decarboxylase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400037384" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042079t2" /inference="similar to AA sequence:Phytozome:POPTR_0006s12920.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:PASA:2:TSA:puevd3b021460t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2004t3" CDS complement(join(2950021..2950113,2950582..2950725, 2950820..2950890,2952534..2952633,2953310..2953340, 2953506..2953603,2954325..2954444)) /locus_tag="TCM_022168" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042079t2" /codon_start=1 /product="Lysine decarboxylase family protein isoform 2" /protein_id="EOY07844.1" /db_xref="Phytozome:POPTR_0006s12920.1" /db_xref="TAIR:AT2G37210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IQ18" /translation="MEMESETQQSRFRRICVFCGSSQGKKSSYQDAAIELGRELVSRN IDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRK AEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKA VEEGFISPSARQIIVSAPTAKELVKKLEEYVPCHERVASKLSWEMEQLGYSKTYDISR " CDS complement(join(2950021..2950113,2950582..2950725, 2950820..2950890,2952534..2952633,2953310..2953340, 2953506..2953603,2953924..2953968,2954325..2954444)) /locus_tag="TCM_022168" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042079t2" /codon_start=1 /product="Lysine decarboxylase family protein isoform 1" /protein_id="EOY07843.1" /db_xref="Phytozome:POPTR_0006s12920.1" /db_xref="TAIR:AT2G37210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IQ18" /translation="MEMESETQQSRFRRICVFCGSSQGKKSSYQDAAIELGRELETLM VFQFFSMPIQEVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGE TVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLN VDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPTAKELVKKLEEYVPCHERVASKLSW EMEQLGYSKTYDISR" mRNA complement(join(2950485..2950673,2950820..2950890, 2952534..2952633,2953310..2953340,2953506..2953603, 2954325..2954658)) /locus_tag="TCM_022168" /product="Lysine decarboxylase family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400037384" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042079t2" /inference="similar to AA sequence:Phytozome:GSVIVT01025695001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1419t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2004t3" CDS complement(join(2950596..2950673,2950820..2950890, 2952534..2952633,2953310..2953340,2953506..2953603, 2954325..2954444)) /locus_tag="TCM_022168" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG042079t2" /codon_start=1 /product="Lysine decarboxylase family protein isoform 3" /protein_id="EOY07845.1" /db_xref="Phytozome:GSVIVT01025695001" /db_xref="TAIR:AT2G37210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IQ18" /translation="MEMESETQQSRFRRICVFCGSSQGKKSSYQDAAIELGRELVSRN IDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRK AEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPTKLWKRDLLVQVHARSLYLH LQQRS" mobile_element complement(2958625..2958698) /note="source:CACAO_M_S_E144701_F231_scaffold_10 1177 1224" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 2965893..2971416 /note="source:scaffold_5_CACTA_0582 1 5524" /mobile_element_type="transposon:TIR/CACTA" gene complement(2977281..2982029) /locus_tag="TCM_022171" /note="dbxref CacaoGD:Thecc1EG022171" mRNA complement(join(2977281..2978205,2978311..2978547, 2978743..2978854,2979234..2979526,2979788..2980000, 2980259..2980805,2981791..2982013)) /locus_tag="TCM_022171" /product="Cyclic nucleotide-gated channel 15 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400011894" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042082t1" /inference="similar to AA sequence:Phytozome:GSVIVT01025696001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1766t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2472t4" mRNA complement(join(2977286..2978205,2978311..2978547, 2978743..2978854,2979234..2979526,2979788..2980000, 2980259..2980805,2981022..2981309,2981458..2982029)) /locus_tag="TCM_022171" /product="Cyclic nucleotide-gated channel 15 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400011894" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042082t1" /inference="similar to AA sequence:Phytozome:GSVIVT01025696001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2472t4" CDS complement(join(2977498..2978205,2978311..2978547, 2978743..2978854,2979234..2979526,2979788..2980000, 2980259..2980805,2981022..2981050)) /locus_tag="TCM_022171" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042082t1" /codon_start=1 /product="Cyclic nucleotide-gated channel 15 isoform 1" /protein_id="EOY07846.1" /db_xref="Phytozome:GSVIVT01025696001" /db_xref="TAIR:AT2G28260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HQC1" /translation="MASGNSKSVRFQNDPEKTTFTSTKGGHLSKFMSKMNCNQVPELR TKTFEKTAIGKTFHKKELSRVFSEDYEVVEKTILDPRGPDINRWNKLFLVACLISLFV DPLFFYLPQAKKSMCMTVSLPLEIDLTVTRSVVDAFYIIQIFVRFRTAYVAPSSRVFG RGELVIDPSKIASRYLHKDFWLDIIAAQPLPQVLVWAVIPKLRGSSMVTTKNIVRLII IFQYLLRLYLIFPLSSQIIKTSGVVTETAWAGAAYNLMLYMLASHVLGASWYLLSLER QEECWRKVCSLPVIDCRYEFFDCRFVGDPARAAWFNSSNISGLCDPRSDFFQFGIYAD ALQFGVTSSGFFRKYFYCLWWGLRNLSSLGQGLFTSTYVGEIIFAIIIAIVGLVLFAL LIGNMQTYLQSTTVRLEEWRIRRTDTEQWMHHRQLPHELKQSVRRYDQYKWVATRGVD EEAILKSLPMDLRRDIKRHLCVDLVRQVPLFDLMDDRMLDAICERLKPCLRTPSTCLV REGDPVNEMLFIVRGHLDSFTTNGGRTGFFNSSRIGPGDFCGEELLTWALDPRPNIVL PSSTRTVKAITEVEAFALVSEDLKFVAAQFRRLHSKQLRHTFRFHSHQWRTWAACFIQ AAWFRYKRRKGVAELKKWESMAASSPEQATEQTGAPALPPVASGFASYAAKLAASTRS RGGSRRCGTDFDILGSLQKPNEPDFTVEDR" CDS complement(join(2977498..2978205,2978311..2978547, 2978743..2978854,2979234..2979526,2979788..2980000, 2980259..2980741)) /locus_tag="TCM_022171" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042082t1" /codon_start=1 /product="Cyclic nucleotide-gated channel 15 isoform 2" /protein_id="EOY07847.1" /db_xref="Phytozome:GSVIVT01025696001" /db_xref="TAIR:AT2G28260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HQC1" /translation="MSKMNCNQVPELRTKTFEKTAIGKTFHKKELSRVFSEDYEVVEK TILDPRGPDINRWNKLFLVACLISLFVDPLFFYLPQAKKSMCMTVSLPLEIDLTVTRS VVDAFYIIQIFVRFRTAYVAPSSRVFGRGELVIDPSKIASRYLHKDFWLDIIAAQPLP QVLVWAVIPKLRGSSMVTTKNIVRLIIIFQYLLRLYLIFPLSSQIIKTSGVVTETAWA GAAYNLMLYMLASHVLGASWYLLSLERQEECWRKVCSLPVIDCRYEFFDCRFVGDPAR AAWFNSSNISGLCDPRSDFFQFGIYADALQFGVTSSGFFRKYFYCLWWGLRNLSSLGQ GLFTSTYVGEIIFAIIIAIVGLVLFALLIGNMQTYLQSTTVRLEEWRIRRTDTEQWMH HRQLPHELKQSVRRYDQYKWVATRGVDEEAILKSLPMDLRRDIKRHLCVDLVRQVPLF DLMDDRMLDAICERLKPCLRTPSTCLVREGDPVNEMLFIVRGHLDSFTTNGGRTGFFN SSRIGPGDFCGEELLTWALDPRPNIVLPSSTRTVKAITEVEAFALVSEDLKFVAAQFR RLHSKQLRHTFRFHSHQWRTWAACFIQAAWFRYKRRKGVAELKKWESMAASSPEQATE QTGAPALPPVASGFASYAAKLAASTRSRGGSRRCGTDFDILGSLQKPNEPDFTVEDR" gene complement(2984190..2987134) /locus_tag="TCM_022172" /note="dbxref CacaoGD:Thecc1EG022172" mRNA complement(join(2984190..2984523,2984935..2985036, 2985302..2985601,2986047..2986148,2986663..2986721, 2986795..2987134)) /locus_tag="TCM_022172" /product="RNA-binding family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30078.m002323" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014513t1" /inference="similar to AA sequence:ricco:30078.m002323" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01440t00002" mRNA complement(join(2984265..2984523,2984970..2985036, 2985302..2985601,2986047..2986148,2986663..2987027)) /locus_tag="TCM_022172" /product="RNA-binding family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30078.m002323" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014513t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s09190.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01440t00002; inference alignment:Newbler:10:TSA:cgbaL_g01440t00002; inference alignment:Newbler:10:TSA:cgbaB_g02208t00002" CDS complement(join(2984974..2985036,2985302..2985601, 2986047..2986148,2986663..2986721,2986795..2987035)) /locus_tag="TCM_022172" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30078.m002323; paralog of Thecc1EG014513t1" /codon_start=1 /product="RNA-binding family protein isoform 1" /protein_id="EOY07848.1" /db_xref="TAIR:AT2G37220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFN7" /translation="MSATSASSLILPCLNPKTLSLSNPRPISLFLFSLSHKLHAKPLF CSALQSFELLTKKSSSSRFVRNVAISSEYGQEEDLFVWTVPSSLVVESAGNVEMVEVI YDKVTGRSRGFGFVTMSTAEEVEAAAQQFNGYELEGRALRVNSGPPPPRREEFSPRGS RGAPALGASNRVYVGNLSWGVDDLALETLFSEQGKVVEAKVVYDRESGRSRGFGFVTY NSAEEVDSAIKSLNGVDLDGRPIRVSVAESRPRRQF" CDS complement(join(2984974..2985036,2985302..2985601, 2986047..2986148,2986663..2986671)) /locus_tag="TCM_022172" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG014513t1" /codon_start=1 /product="RNA-binding family protein isoform 2" /protein_id="EOY07849.1" /db_xref="Phytozome:POPTR_0016s09190.1" /db_xref="TAIR:AT2G37220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFN7" /translation="MVEVIYDKVTGRSRGFGFVTMSTAEEVEAAAQQFNGYELEGRAL RVNSGPPPPRREEFSPRGSRGAPALGASNRVYVGNLSWGVDDLALETLFSEQGKVVEA KVVYDRESGRSRGFGFVTYNSAEEVDSAIKSLNGVDLDGRPIRVSVAESRPRRQF" gene complement(2987852..2994572) /locus_tag="TCM_022173" /note="dbxref CacaoGD:Thecc1EG022173" mRNA complement(join(2987852..2988476,2988551..2988682, 2988890..2989264,2989783..2990032,2990449..2990525, 2992127..2992201,2992346..2992447,2992792..2992910, 2993166..2993289,2993432..2993482,2993583..2993681, 2994271..2994572)) /locus_tag="TCM_022173" /product="Calcium-dependent lipid-binding family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025699001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043170t1" /inference="similar to AA sequence:ricco:30078.m002321" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02643t00002" CDS complement(join(2988348..2988476,2988551..2988682, 2988890..2989264,2989783..2990032,2990449..2990525, 2992127..2992201,2992346..2992447,2992792..2992910, 2993166..2993289,2993432..2993482,2993583..2993681, 2994271..2994384)) /locus_tag="TCM_022173" /note="dbxref ricco:30078.m002321; paralog of Thecc1EG043170t1" /codon_start=1 /product="Calcium-dependent lipid-binding family protein" /protein_id="EOY07850.1" /db_xref="TAIR:AT5G04220.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7XA06" /translation="MMGLVGCLLGIIGFGIGVPIGLFIGFLLFIYKEPADVKDPIIRP LHDLDTSSLLDILPEIPSWMKHPDYDRIDWLNRFISDMWPFLNKAISGIIRSTMEPIF AEYTGKLQIISIYFKSLRLGTIPPIIHGIKVVETNQNELVFEPVLRWAGNPDITLVLN LLSLKITLQLLDVQICAAPRIALKPLVPTFPCFTRISVSLMEKPQVDFGLRLLGADIM AIPGLYQYIQEMISKQIASFYLWPQTLEIPILDGSVGATKKPVGILHVKVVRALKLLK MDLLGSSDPYVKLSLSGERLPAKKTSIKMRNLNPVWNEDFKLTVKDPQSQVLQLHVYD WEKVGTHDKLGMQVVPLRLLTPHETQEFSLDLVKNTNPNDPQNKKPRGQLVVQMTFNP FKEDNERFSGPLDRYASNGSGVGRLPKHDGSICGAGLLSVILQRAEGVEGKYHNNPYA VIIFKGEKKKSKLVKRTRDPCWNEEFQFVLEEAPLKDMIHIEVMSKRRHFSLLRRKES LGHVDINLNDVVHNGRINEKYDLMNSKYGVICIEIRWEVT" mobile_element complement(2990887..2991669) /note="source:CACAO_on_E137_scaffold_4 8 823" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(3000228..3000287) /note="source:CACAO_M_E65313_F266_scaffold_9 173 215" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3000246..3000295 /note="source:scaffold_6_CACTA_0712 1342 1391" /mobile_element_type="transposon:TIR/CACTA" gene 3000304..3010163 /locus_tag="TCM_022174" /note="dbxref CacaoGD:Thecc1EG022174" mRNA join(3000304..3000736,3001575..3001807,3002067..3002450, 3003062..3003148,3003289..3003399,3003479..3003691, 3004892..3005077,3005207..3007906,3008521..3009405) /locus_tag="TCM_022174" /product="EIN2-like protein, nramp transporter isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s12900.1" /inference="similar to AA sequence:ricco:30078.m002320" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1301t4" mobile_element complement(3000545..3000605) /note="source:scaffold_5_CACTA_0612 5424 5486" /mobile_element_type="transposon:TIR/CACTA" mRNA join(3000560..3000736,3001575..3002450,3003062..3003148, 3003289..3003399,3003479..3003691,3004892..3005077, 3005207..3007906,3008521..3010163) /locus_tag="TCM_022174" /product="EIN2-like protein, nramp transporter isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s12900.1" /inference="similar to AA sequence:ricco:30078.m002320" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc826t1; alternateUTRof:Thecc1EG022174t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1301t4" CDS join(3002202..3002450,3003062..3003148,3003289..3003399, 3003479..3003691,3004892..3005077,3005207..3007906, 3008521..3008910) /locus_tag="TCM_022174" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30078.m002320" /codon_start=1 /product="EIN2-like protein, nramp transporter isoform 1" /protein_id="EOY07851.1" /db_xref="TAIR:AT5G03280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTC7" /translation="MEAEMGNANHKPAALHRLLPAVLPVLLISIGYVDPGKWVATVDG GARFGFDLVGPMLLFNFAAILCQYLSARIGVVTGKDLAQICNDEYDKATCIFLGVQAE LSVLLLDLTMVLGVGHGINLLFGVDLSTGVFLAALDALLFPVFATLLDHCRASFLCMY AVGFILLSYISGVLISQPEISLSMTGMLTKLSGESAFALMSLLGASIMPHNFYLHSSF VQRHQGPPNISKSALCHDQLFAILCIFSGIYLVNYVLMNSAANVFYSAGLVLVTFQDA MSLMEQVFRSGVLPLVFLLIMFLSNQITASTWNLGGHVVLHDFLGLDIPGWLHCATIR IIAMVPALYCVWTSGAEGIYQLLIFTQVMVALLLPSSVIPLFRIGSSRPIMGVYKISP IVEFLALLTFMGMLGLKIIFVVEMIFGNSDWVGNLRLNAGISMSVPFVVLLVTACASF SLMLWLAATPLKSATARIDAPAWKWDLNRTVPEAAIEGEESGLSETRYHGEEPVHRQE SSSTPGKSIESHSDLSFTNYDLDLPETIMESDQDIPLTTVIENSSNSLYPSPAVRNPE ESASIIESAATLVNEVADDELPGTKTVTIESMNPVEKTVSLEGDLQIEKDDDDGDTWE PEEPSKPPSGSISSLTPDGPPSLRSLSGKSDDGGNGTGSLSRLAGLGRAARRQLAAIL DEFWGQLYDFHGQPTQEAKIRKLDVLLGVDTKPMKVDTAGKECGGYFPSVGGRGSDLL ISSSLYDSPKQLKVRNSIDLPYGYSRGSSSSWSNNRQLLDAYVQTSSRNVDSGEKRYS SLRAAPSTDAWDYQPATVHGYQIASYLSRIAKNRSSDCLNGQMELPASKSPALGPINY RDPLAFTLGQKLQNGITPVQAPGFQNVAVSRNSPLQSERSYYDISSLGPNDNSVISVN SKKYHSLPDISGLSVPHRDSYMSDRSAQWDSSIGYGSSVGRTNYDTPMYPNTGSRAGV PLAFDELSQSKGYKDAFSFQLSSSPDTGSLWSRQPFEQFGVAEKRRTAGSEAFGSGLN SEARDTASGEDLESKLLQSFRDCIVKLLKLDGFDWLFRQNDGADEDLIDRVAARERFV YDAEAREINQVAHLGEPQYLSSERRYGSTPIRDKANLVNFSISSFPHCGEGCIYKADL VISFGVWCIHRILDLSLMESRPELWGKYTYVLNRLQGVIDLAFSKPRTPMTPCFCLQI PVEYQQRSSPPISNGMLPPAAKPGRGKCTTAATLLEKIKDVEIAISCRKGRTGTAAGD VAFPKGKENLASVLKRYKRRLSNKPFGTHEGSGSRKVPTSTPVLASYSS" CDS join(3002202..3002450,3003062..3003148,3003289..3003399, 3003479..3003691,3004892..3005077,3005207..3007906, 3008521..3008910) /locus_tag="TCM_022174" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30078.m002320" /codon_start=1 /product="EIN2-like protein, nramp transporter isoform 1" /protein_id="EOY07852.1" /db_xref="TAIR:AT5G03280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTC7" /translation="MEAEMGNANHKPAALHRLLPAVLPVLLISIGYVDPGKWVATVDG GARFGFDLVGPMLLFNFAAILCQYLSARIGVVTGKDLAQICNDEYDKATCIFLGVQAE LSVLLLDLTMVLGVGHGINLLFGVDLSTGVFLAALDALLFPVFATLLDHCRASFLCMY AVGFILLSYISGVLISQPEISLSMTGMLTKLSGESAFALMSLLGASIMPHNFYLHSSF VQRHQGPPNISKSALCHDQLFAILCIFSGIYLVNYVLMNSAANVFYSAGLVLVTFQDA MSLMEQVFRSGVLPLVFLLIMFLSNQITASTWNLGGHVVLHDFLGLDIPGWLHCATIR IIAMVPALYCVWTSGAEGIYQLLIFTQVMVALLLPSSVIPLFRIGSSRPIMGVYKISP IVEFLALLTFMGMLGLKIIFVVEMIFGNSDWVGNLRLNAGISMSVPFVVLLVTACASF SLMLWLAATPLKSATARIDAPAWKWDLNRTVPEAAIEGEESGLSETRYHGEEPVHRQE SSSTPGKSIESHSDLSFTNYDLDLPETIMESDQDIPLTTVIENSSNSLYPSPAVRNPE ESASIIESAATLVNEVADDELPGTKTVTIESMNPVEKTVSLEGDLQIEKDDDDGDTWE PEEPSKPPSGSISSLTPDGPPSLRSLSGKSDDGGNGTGSLSRLAGLGRAARRQLAAIL DEFWGQLYDFHGQPTQEAKIRKLDVLLGVDTKPMKVDTAGKECGGYFPSVGGRGSDLL ISSSLYDSPKQLKVRNSIDLPYGYSRGSSSSWSNNRQLLDAYVQTSSRNVDSGEKRYS SLRAAPSTDAWDYQPATVHGYQIASYLSRIAKNRSSDCLNGQMELPASKSPALGPINY RDPLAFTLGQKLQNGITPVQAPGFQNVAVSRNSPLQSERSYYDISSLGPNDNSVISVN SKKYHSLPDISGLSVPHRDSYMSDRSAQWDSSIGYGSSVGRTNYDTPMYPNTGSRAGV PLAFDELSQSKGYKDAFSFQLSSSPDTGSLWSRQPFEQFGVAEKRRTAGSEAFGSGLN SEARDTASGEDLESKLLQSFRDCIVKLLKLDGFDWLFRQNDGADEDLIDRVAARERFV YDAEAREINQVAHLGEPQYLSSERRYGSTPIRDKANLVNFSISSFPHCGEGCIYKADL VISFGVWCIHRILDLSLMESRPELWGKYTYVLNRLQGVIDLAFSKPRTPMTPCFCLQI PVEYQQRSSPPISNGMLPPAAKPGRGKCTTAATLLEKIKDVEIAISCRKGRTGTAAGD VAFPKGKENLASVLKRYKRRLSNKPFGTHEGSGSRKVPTSTPVLASYSS" gene 3009495..3010038 /locus_tag="TCM_022175" /note="dbxref CacaoGD:Thecc1EG022175" mRNA join(3009495..3009615,3009757..3010038) /locus_tag="TCM_022175" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2042t1" CDS join(3009500..3009615,3009757..3009916) /locus_tag="TCM_022175" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07853.1" /translation="MFIIIQSYRFIAFHTHNSSASTTLCLKGEDGASYFDFKRAEVKD LPSTWGHLLLRLQLQLRQPKENHPRSKVAEKLACLIKVTLWVSSVFA" mobile_element complement(3012175..3012520) /note="source:CACAO_Mariner_E176_scaffold_6 4004 4338" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(3013807..3013906) /note="source:scaffold_7_CACTA_0795 2950 3050" /mobile_element_type="transposon:TIR/CACTA" gene 3015279..3016711 /locus_tag="TCM_022177" /note="dbxref CacaoGD:Thecc1EG022177" mRNA join(3015279..3015581,3015672..3016711) /locus_tag="TCM_022177" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.58 coverage" gene complement(3015319..3016789) /locus_tag="TCM_022178" /note="dbxref CacaoGD:Thecc1EG022178" mRNA complement(3015319..3016789) /locus_tag="TCM_022178" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.53 coverage" CDS join(3015415..3015581,3015672..3015729) /locus_tag="TCM_022177" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07854.1" /translation="MNLPLMPHDFTNRTSPQGTEVLGLAQGVRTPEYSKFFTVFDGII IIAALQLTVRPILKWSKQPVLRALKYGSGA" CDS complement(3016229..3016528) /locus_tag="TCM_022178" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07855.1" /translation="MKKNITKKKLKFFHIPRRKEWGRGVLFSNKSLGPNCQDQDSEFD RRPHIPPTPNPPLPIPKHGSYLQRVPSHPIPSHPTHQSGFPSFPLHEEIFISPSV" gene 3020550..3024378 /locus_tag="TCM_022179" /note="dbxref CacaoGD:Thecc1EG022179" mRNA join(3020550..3021450,3022119..3024378) /locus_tag="TCM_022179" /product="PHE ammonia lyase 1" /inference="alignment:exonerate- protein:2:ricco:30078.m002319" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043179t1" /inference="similar to AA sequence:ricco:30078.m002319" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03879t00001" CDS join(3021032..3021450,3022119..3023868) /locus_tag="TCM_022179" /note="dbxref ricco:30078.m002319; paralog of Thecc1EG043179t1" /codon_start=1 /product="PHE ammonia lyase 1" /protein_id="EOY07856.1" /db_xref="TAIR:AT2G37040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P35510" /translation="METIAQNGRQNGSLESFCTTASTATKGAVVDPLNWGATAESLKG SHLDEVKRMVAEYRKPSVKLGGETLTISQVAAIATRDLGVKVELSEDARAGVKASADW VLDGMNKGTDSYGVTTGFGATSHRRTKQGAALQKELIRFLNAGIFGNGTESCHTLPHS ATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYI AGLLTGRPNSKAVGPKGESLDAQEAFCVAGIDTGFFVLQPKEGLALVNGTAVGSGLAS MVLFEANILAVLSEILSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHILEGS SYVKAAKKLHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPL IDVSRNKALHGGNFQGTPIGVSMDNARLAIAAIGKLMFAQFSELVNDFYNNGLPSNLS GGRNPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQDVNSLGLISSRKTA EAVDILKLMSSTYLVALCQAIDLRHLEENLRNTVKNTVSQIAKKILTTGANGELHPSR FSEKDLLKAVDSEYVFAYIDDPCSATYPLMQKLRQVLVEHALANGENEKNASTSIFQK VAAFEEELKAILPKEVESARLSLENGNAGIPNRIQECRSYPLYKFVREELGTGLLTGE NVKSPGEEFDKVFTAMCQGKIIDPMLECLKEWNGAPLPIC" mobile_element complement(3025289..3025472) /note="source:CACAO_PIF_E144_scaffold_10 2138 2332" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 3025474..3025628 /note="source:scaffold_2_CACTA_0245 1655 1818" /mobile_element_type="transposon:TIR/CACTA" gene 3026359..3029323 /locus_tag="TCM_022180" /note="dbxref CacaoGD:Thecc1EG022180" mRNA join(3026359..3026690,3027005..3027325,3027416..3027577, 3027668..3027742,3027975..3028084,3028157..3028229, 3028721..3029323) /locus_tag="TCM_022180" /product="Isocitrate dehydrogenase V isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s09240.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000083t2" /inference="similar to AA sequence:Phytozome:POPTR_0016s09240.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02582t00001" mRNA join(3026366..3026690,3027005..3027325,3027416..3027577, 3027668..3027739,3027789..3027869,3028009..3028084, 3028157..3028229,3028721..3028782) /locus_tag="TCM_022180" /product="Isocitrate dehydrogenase V isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s09240.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000083t2" /inference="similar to AA sequence:Phytozome:POPTR_0016s09240.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc495t10; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc495t9; inference alignment:Newbler:10:TSA:cgbaP1_g02582t00001" CDS join(3026511..3026690,3027005..3027325,3027416..3027577, 3027668..3027742,3027975..3028084,3028157..3028229, 3028721..3028912) /locus_tag="TCM_022180" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG000083t2" /codon_start=1 /product="Isocitrate dehydrogenase V isoform 1" /protein_id="EOY07857.1" /db_xref="Phytozome:POPTR_0016s09240.1" /db_xref="TAIR:AT5G03290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q945K7" /translation="MATQLLRRRATQILSHSNLNPNRTSPLSLARAFSSATDPIRATL FPGDGIGPEIAESVKQVFRAAEVPIEWEEHYVGDQIDPRTQSFLTWESLESVRRNGVG LKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDNVNLITIRENTEGE YSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGL FLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPALFDVLVMPNLYGDIISDLCAGLVG GLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSAVSMLHHLNLHDKADR IQDAILKTIAEGNHRTADLGGSSTTTDFTKAICDHL" CDS join(3026511..3026690,3027005..3027325,3027416..3027577, 3027668..3027739,3027789..3027797) /locus_tag="TCM_022180" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG000083t2" /codon_start=1 /product="Isocitrate dehydrogenase V isoform 3" /protein_id="EOY07859.1" /db_xref="Phytozome:POPTR_0016s09240.1" /db_xref="TAIR:AT5G03290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q945K7" /translation="MATQLLRRRATQILSHSNLNPNRTSPLSLARAFSSATDPIRATL FPGDGIGPEIAESVKQVFRAAEVPIEWEEHYVGDQIDPRTQSFLTWESLESVRRNGVG LKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDNVNLITIRENTEGE YSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGL FLKCCREVAEKYPEITYEEVVIDNCCMHF" mRNA join(<3027006..3027325,3027416..3027577,3027668..3027742, 3027975..3028084,3028157..3028229,3028721..3028780, 3028856..3029320) /locus_tag="TCM_022180" /product="Isocitrate dehydrogenase V isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s09240.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000083t2" /inference="similar to AA sequence:Phytozome:POPTR_0016s09240.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g03616t00002; inference alignment:Newbler:10:TSA:cgbaP1_g02582t00001; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc495t9" CDS join(<3027008..3027325,3027416..3027577,3027668..3027742, 3027975..3028084,3028157..3028229,3028721..3028780, 3028856..3028912) /locus_tag="TCM_022180" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG000083t2" /codon_start=1 /product="Isocitrate dehydrogenase V isoform 2" /protein_id="EOY07858.1" /db_xref="Phytozome:POPTR_0016s09240.1" /db_xref="TAIR:AT5G03290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q945K7" /translation="FRAAEVPIEWEEHYVGDQIDPRTQSFLTWESLESVRRNGVGLKG PMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDNVNLITIRENTEGEYSG LEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLK CCREVAEKYPEITYEEVVIDNCCMMLVKNPALFDVLVMPNLYGDIISDLCAGLVGGLG LTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSAVSMLHHLNLGGSSTTTDF TKAICDHL" gene complement(3028644..3047694) /locus_tag="TCM_022181" /note="dbxref CacaoGD:Thecc1EG022181" mRNA complement(join(3028644..3030222,3030597..3030795, 3030897..3031328,3031654..3032934,3033782..3033886, 3035024..3035083,3035191..3035258,3035425..3036370, 3038575..3038748,3038894..3039202,3039274..3039414, 3039542..3039796,3040850..3040999,3042283..3042549, 3042700..3042830,3042945..3043132,3043828..3043973, 3044602..3044683,3045627..3045843)) /locus_tag="TCM_022181" /product="Chromatin remodeling complex subunit-like protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Sb04g000870.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is medium, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:PASA:2:TSA:puevd3b021473t1a2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc610t11" mRNA complement(join(3029414..3029843,3029939..3030222, 3030597..3030795,3030897..3031328,3031654..3032934, 3033782..3033886,3035024..3035083,3035191..3035255, 3035425..3036370,3038575..3038748,3038894..3039202, 3039274..3039414,3039542..3039796,3040850..3040999, 3042283..3042549,3042700..3042830,3042945..3043132, 3043828..3043973,3044602..3044683,3045627..3045723, 3046404..3046931,3047549..3047694)) /locus_tag="TCM_022181" /product="Chromatin remodeling complex subunit-like protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Sb04g000870.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc610t11" CDS complement(join(3029648..3030222,3030597..3030795, 3030897..3031328,3031654..3032934,3033782..3033886, 3035024..3035083,3035191..3035258,3035425..3036370, 3038575..3038748,3038894..3039202,3039274..3039414, 3039542..3039796,3040850..3040999,3042283..3042549, 3042700..3042830,3042945..3043132,3043828..3043973, 3044602..3044683,3045627..3045634)) /locus_tag="TCM_022181" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Chromatin remodeling complex subunit-like protein isoform 2" /protein_id="EOY07861.1" /db_xref="TAIR:AT1G08060.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I6P2" /translation="MQRVDFDSTQQCYSCNAEPGNALHSVFPVQDGKELISELNMDQT EEYSSDVLDKESQLEIKTGGGHNACVTCMLGGKLLSCVGKGCKRDFHLSCLVPALSNY PPGVWHCIWCVKKKKELGVHSVSEVESIWDAREAVSDNKTMPWEKQYFVKYRGLAHVH NRWIPEKKLLLEAPRLVTKYNSKNQEIRWKTEWTVPHRLLQKRKLLFPTNSDENDLDC TYEWLVKWTGLGYEHATWELENSSFLTSPEAMKLMRDFEIRHLKSETLSSHSEEEKKE KCSVSELSQLSFGGSPGEYDRYLSYVNKLLAHWNKCQNAVVYDDQVDQERVIKVILFV LSLQFTARKPILIISKSTALSVWESEFLRVASSANIIVYKGSKDVRSSIRSLEFYNES SSIMFEILLSSSDVVAEDLDMLKAVEWGAVVIDECQSSRMSRYFEQIKRLIADMRLLL VSGQIKDCSADYQNLLSLLDSGYELSSDHLKIDSNTNVYELKETFASYVAFECKSGSS RFVEYWVPVQLSYLQLEQYCAALLSNSMFLSSSLKSDPADALREVIISTRKCCDHPYL LDQSLQSVVTKGLSAEENLAVGIKVSGKLQLLDKILVETKARGLRVLILFQSIGGSGR DSIGNILDDFICQRFGKYSYVRIDGRGYANSKKKVVVNMFNDKESGRLFLLLEDRACL PSIKLSAVDIVILFDSDWEPLNDIKALHRISIGSQFEQLKVFRLYSSFTVEEKILILA KEGRRVDSNIRTLNRNSCLRLLSWGASYLFNKLDEFHGCSKLFSVSNVSCEQSFLNAV LLELLRQLPCRGESNHSAKCSFITKVPQNIVYDGNISLFGEKEIGSMNHEPSTFSWQK LLEGRQPQWKLLSESSPRRKKFQYLDNPPRKSEFGDGGDIKKSQIVVNSTDDPTYPNW KLKGKRKITVANKKRKLAAASKDIGETNFHCSTDGKKDVNQNNQLLLKLGISKLCETL LLPENVRGTAVAFLEYIMRDYDVSWESVSTSQAYQISLCWTAADLLEHKINQNKSLAL AKLRLNLDCREEEVDYIYSKLQSVAKKFAQCSENVKGYKKSNCSKRVCVNPQHPVPKT IPSIPSCGQSGTLQSASSNGPDESLTEKTVSSLPLRLVADHFKSDPEHGGTEVIVLEG VRANNSKQHFKVGSPCDQPKDHALILDSRHHQSPVRLPTTDFIAEPSEVPQAQCNEIV TGNDLVTTTNATQPNEDSDETDAVTLERATVFGSPSDQPKDHALISHSRHHRSPVRLP ATDFVTEPSEVPQAQCNAMVTGNDLVKTTNATQPNEESDETDAVTLERAIVFGSPSDQ PKDHALISESQHHRSPVRLPATNFVAEPSEVPQAQCNAMVTGNDLVKTTNATRPDEES DETDAVSLERATLSRISQHDSAVTHLTGDLNALEFTGTGQSLVEADINTVESYSLLCQ ETAVSLPLHIRSSSSESSISTIPASGIQHLLSSNQHALCQEAPVPRQPLLEVPLDESS GPPVMHSVTLVPQQPSASTPVGESQMCIENQRSTTTLLRSPNDYPCQVNIVRPVSVTP QPACSKPLRIELERIQKFREQTLKLHEDTILRLKSECDKEIEEICKKYDMLLQDAEVA FMQKGQDLESYCSKVYLNNILAETLTFNLEKNSAGSPAIDSFINQLIQQPSLMLDPQI PSSTGLGAAAPAQMSNHTPTGVVAPHSSPAIRVRGSCWVGNARAPAPHLRALNPPPMS TPHISALRGKMPNQQSVSNPQTISPYLPHGTPRLPRESSGIHFPVFNSYVSALEVPLD IGNHAGPNPQHQLRPWHNWGLTSHIPSLTDRVATGSPVVPAAFDAEPICLSDDD" CDS complement(join(3029790..3029843,3029939..3030222, 3030597..3030795,3030897..3031328,3031654..3032934, 3033782..3033886,3035024..3035083,3035191..3035255, 3035425..3036370,3038575..3038748,3038894..3039202, 3039274..3039414,3039542..3039796,3040850..3040999, 3042283..3042549,3042700..3042830,3042945..3043132, 3043828..3043973,3044602..3044683,3045627..3045723, 3046404..3046923)) /locus_tag="TCM_022181" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Chromatin remodeling complex subunit-like protein isoform 1" /protein_id="EOY07860.1" /db_xref="TAIR:AT1G08060.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I6P2" /translation="MESNSGISGSSRKGNGANRSKMTSTTAEGLTSLASAGKDSNCSR SSTREMCKNILTSPSPSSGGNKKQFQKPMFKTKRTPKWFEKRRMTRSMKRLDKIDRYF SCFSVSKMCEKVSGSLRYEKVKLVNPQELVKPHDNVKRVADHELNPSNRMRCDSRSYR EWLRLRASKYKVSGSYGRLSVTSADACEEVKEEVIESRLLCSKMQRVDFDSTQQCYSC NAEPGNALHSVFPVQDGKELISELNMDQTEEYSSDVLDKESQLEIKTGGGHNACVTCM LGGKLLSCVGKGCKRDFHLSCLVPALSNYPPGVWHCIWCVKKKKELGVHSVSEVESIW DAREAVSDNKTMPWEKQYFVKYRGLAHVHNRWIPEKKLLLEAPRLVTKYNSKNQEIRW KTEWTVPHRLLQKRKLLFPTNSDENDLDCTYEWLVKWTGLGYEHATWELENSSFLTSP EAMKLMRDFEIRHLKSETLSSHSEEEKKEKCSVSELSQLSFGGSPGEYDRYLSYVNKL LAHWNKCQNAVVYDDQVDQERVIKVILFVLSLQFTARKPILIISKSTALSVWESEFLR VASSANIIVYKGSKDVRSSIRSLEFYNESSSIMFEILLSSSDVVAEDLDMLKAVEWGA VVIDECQSSRMSRYFEQIKRLIADMRLLLVSGQIKDCSADYQNLLSLLDSGYELSSDH LKIDSNTNVYELKETFASYVAFECKSGSSRFVEYWVPVQLSYLQLEQYCAALLSNSMF LSSSLKSDPADALREVIISTRKCCDHPYLLDQSLQSVVTKGLSAEENLAVGIKVSGKL QLLDKILVETKARGLRVLILFQSIGGSGRDSIGNILDDFICQRFGKYSYVRIDGRGYA NSKKKVVVNMFNDKESGRLFLLLEDRACLPSIKLSAVDIVILFDSDWEPLNDIKALHR ISIGSQFEQLKVFRLYSSFTVEEKILILAKEGRRVDSNIRTLNRNSCLRLLSWGASYL FNKLDEFHGCSKLFSVSNVSCEQSFLNAVLLELLRQLPCRGESNHSAKCSFITKVPQN IVYDGNISLFGEKEIGSMNHEPSTFSWQKLLEGRQPQWKLLSESSPRRKKFQYLDNPP RKSEFGDGGDIKKSQIVVNSTDDPTYPNWKLKGKRKITVANKKRKLAASKDIGETNFH CSTDGKKDVNQNNQLLLKLGISKLCETLLLPENVRGTAVAFLEYIMRDYDVSWESVST SQAYQISLCWTAADLLEHKINQNKSLALAKLRLNLDCREEEVDYIYSKLQSVAKKFAQ CSENVKGYKKSNCSKRVCVNPQHPVPKTIPSIPSCGQSGTLQSASSNGPDESLTEKTV SSLPLRLVADHFKSDPEHGGTEVIVLEGVRANNSKQHFKVGSPCDQPKDHALILDSRH HQSPVRLPTTDFIAEPSEVPQAQCNEIVTGNDLVTTTNATQPNEDSDETDAVTLERAT VFGSPSDQPKDHALISHSRHHRSPVRLPATDFVTEPSEVPQAQCNAMVTGNDLVKTTN ATQPNEESDETDAVTLERAIVFGSPSDQPKDHALISESQHHRSPVRLPATNFVAEPSE VPQAQCNAMVTGNDLVKTTNATRPDEESDETDAVSLERATLSRISQHDSAVTHLTGDL NALEFTGTGQSLVEADINTVESYSLLCQETAVSLPLHIRSSSSESSISTIPASGIQHL LSSNQHALCQEAPVPRQPLLEVPLDESSGPPVMHSVTLVPQQPSASTPVGESQMCIEN QRSTTTLLRSPNDYPCQVNIVRPVSVTPQPACSKPLRIELERIQKFREQTLKLHEDTI LRLKSECDKEIEEICKKYDMLLQDAEVAFMQKGQDLESYCSKVYLNNILAETLTFNLE KNSAGSPAIDSFINQLIQQPSLMLDPQIPSSTGLGAAAPAQMSNHTPTGVVAPHSSPA IRVRGSCWVGNARAPAPHLRALNPPPMSTPHISALRGKMPNQQSLCFSARSSSGYWQS CWS" gene 3033419..3033707 /locus_tag="TCM_022182" /note="dbxref CacaoGD:Thecc1EG022182" mRNA 3033419..3033707 /locus_tag="TCM_022182" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc5130t1" CDS 3033462..3033677 /locus_tag="TCM_022182" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07862.1" /translation="MTHKFVEQYSRKLQIRLEFHIPVINTVCTLMSSKLIHPFTLYQN QFTLKSCPSISKLTLTFTCKHTRVKER" mobile_element complement(3039864..3039913) /note="source:CACAO_M_E49556_F134_scaffold_7 2038 2084" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3046043..3046137 /note="source:scaffold_9_CACTA_0936 328 423" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3047981..3049178) /note="source:scaffold_5_CACTA_0615 1005 2220" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3050096..3053474) /note="source:CACAO_M_E69946_F329_scaffold_9 1 3424" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3053612..3053765) /note="source:CACAO_MITE120_scaffold_7 1 160" /mobile_element_type="transposon:TIR/MITE" gene 3053826..3057951 /locus_tag="TCM_022183" /note="dbxref CacaoGD:Thecc1EG022183" mRNA join(3053826..3054398,3054521..3054574,3055317..3055363, 3055485..3055516,3055616..3055717,3055999..3056066, 3056221..3056297,3056457..3056554,3056639..3056709, 3056791..3056857,3056940..3057123,3057384..3057951) /locus_tag="TCM_022183" /product="Adenosine kinase 2" /inference="alignment:exonerate- protein:2:ricco:28507.m000157" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043180t1" /inference="similar to AA sequence:ricco:28507.m000157" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g01869t00001" CDS join(3054316..3054398,3054521..3054574,3055317..3055363, 3055485..3055516,3055616..3055717,3055999..3056066, 3056221..3056297,3056457..3056554,3056639..3056709, 3056791..3056857,3056940..3057123,3057384..3057526) /locus_tag="TCM_022183" /note="dbxref ricco:28507.m000157; paralog of Thecc1EG043180t1" /codon_start=1 /product="Adenosine kinase 2" /protein_id="EOY07863.1" /db_xref="TAIR:AT5G03300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZG0" /translation="MAYERILLGMGNPLLDISAVVDEDFLKKYDVKLNNAILAEEKHI PMYEEMASNPNVEYIAGGATQNSIKVAQWMLQIPGATSYMGCIGKDKFGEEMKKNSTA AGVNVQYLEDESAPTGTCAVCVVGGERSLIANLSAANCYKSEHLKRPENWALVEKAKY FYIAGFFLTVSPDSIQLVAEHAAANNKVFSMNLSAPFICEFFKDAQEKVLPYMDFVFG NETEARTFSKVHGWETDDVAEIALKISQWPKASGTFKRITVITQGADPVVVAEDGKVK QFPVILLPKEKLVDTNGAGDAFVGGFLSQLVQGKPIDVCVKAGCYASNVIIQRSGCTY PQKPEFN" mobile_element 3058564..3058672 /note="source:scaffold_7_CACTA_0795 2871 2975" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3058588..3058678) /note="source:CACAO_Mutator_E592_scaffold_3 3625 3713" /mobile_element_type="transposon:TIR/Mutator" gene 3058706..3060796 /locus_tag="TCM_022184" /note="dbxref CacaoGD:Thecc1EG022184" mRNA join(3058706..3060362,3060448..3060796) /locus_tag="TCM_022184" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30078.m002316" /inference="similar to AA sequence:Phytozome:POPTR_0006s12850.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1763t5" CDS join(3059186..3060362,3060448..3060506) /locus_tag="TCM_022184" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07864.1" /db_xref="Phytozome:POPTR_0006s12850.1" /db_xref="TAIR:AT2G37035.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTD1" /translation="MTDHHHRFGQLRSTSQILKKTAVQFTAHPFAFLFLSFLLLSFRS LVESGSLLLTSFIDRDPSFKSLLSRLDLHPSHPHARLHPTRRPTRRPFLHLTRVGTLD DDFFSSDDDHRDRSPFGSFPNRPLNGTPVFLSNFDTKLGFSDFVADNGILLPEIVRYG VKFKAASFDYENNEGEQQEERIVDFQFVYKGLELGRRDAAALFFLVSFLSAAYGWVIL GFTAIYSLVLGVLFVTVVNDLIGRFVSFFGAFWDGSKMGLKRLTGFVLMKWAVRDAVT QLLGLWYFGEIEDHYSFFKLFVRLKLMPFSVMSPWIRGFEKEISGFLFTWFLVDTLVS FAFSLAAWIAIVDSRRTGREIIKEGCYLMSTMLNQAIQIKCYEAIVGGSLARWVLTFI GVGKLLQRVGGMGGENWRL" gene complement(3063682..3064226) /locus_tag="TCM_022186" /note="dbxref CacaoGD:Thecc1EG022186" mRNA complement(3063682..3064226) /locus_tag="TCM_022186" /product="SAUR family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025708001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043181t1" /inference="similar to AA sequence:Phytozome:GSVIVT01025708001" /note="quality class is strong, express is none, homology is ortholog strong, intron is none, protein is complete" CDS complement(3063805..3064176) /locus_tag="TCM_022186" /note="paralog of Thecc1EG043181t1" /codon_start=1 /product="SAUR family protein" /protein_id="EOY07865.1" /db_xref="Phytozome:GSVIVT01025708001" /db_xref="TAIR:AT2G37030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFP4" /translation="MKGKTLRACLSKWRKMGSRVIPCGSCEYCYQWAKWPSMHQESSI PRDVPKGHLVVYVGENYKRFVIKITLLKHPLFKALLDQAQDEYDFTTDSKLCIPCDES LFLDVVRCASSPEVGKLSHCL" mobile_element complement(3066493..3066542) /note="source:scaffold_1_CACTA_0030 706 755" /mobile_element_type="transposon:TIR/CACTA" gene 3066924..3068042 /locus_tag="TCM_022187" /note="dbxref CacaoGD:Thecc1EG022187" mRNA 3066924..3068042 /locus_tag="TCM_022187" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.29 coverage" CDS 3066927..3067208 /locus_tag="TCM_022187" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07866.1" /translation="MGNCKKKNLHERVTLSLVKINHWRGRGGETMSEDVGKVVVAGDK RVSIGWEWGEAEEGTWVHMRVGPPHPIPGPTKVFQRGLGGSLTYTNHTA" gene 3070170..3070733 /locus_tag="TCM_022188" /note="dbxref CacaoGD:Thecc1EG022188" mRNA 3070170..3070733 /locus_tag="TCM_022188" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene09607" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc6008t1" CDS 3070244..3070510 /locus_tag="TCM_022188" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07867.1" /translation="MKLLVLFLVVMMVSSSCMAGTRRAMIGGIYGQEQRHRAGKGKAV EGRRNTVEDTDKDIDNHHNIPRQEYGNWGSNSPDNGGNGDDGSG" gene complement(3071228..3078027) /locus_tag="TCM_022189" /note="dbxref CacaoGD:Thecc1EG022189" mRNA complement(join(3071228..3071679,3072179..3072238, 3072322..3072549,3073120..3073673,3073782..3073872, 3074078..3074127,3074941..3075127,3076351..3076463, 3077539..3077609,3077692..3077901)) /locus_tag="TCM_022189" /product="TRF-like 8, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30078.m002313" /inference="similar to AA sequence:Phytozome:GSVIVT01025710001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2299t1; inference alignment:Newbler:10:TSA:cgbaP2_g04878t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc257t2" mRNA complement(join(3071347..3071679,3072182..3072238, 3072322..3072549,3073120..3073673,3073782..3073872, 3074078..3074127,3074941..3075127,3076351..3076463, 3077539..3077609,3077692..3078027)) /locus_tag="TCM_022189" /product="TRF-like 8, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30078.m002313" /inference="similar to AA sequence:Phytozome:GSVIVT01025710001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04878t00001" CDS complement(join(3071470..3071679,3072182..3072238, 3072322..3072549,3073120..3073673,3073782..3073872, 3074078..3074127,3074941..3075127,3076351..3076410)) /locus_tag="TCM_022189" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="TRF-like 8, putative isoform 1" /protein_id="EOY07868.1" /db_xref="Phytozome:GSVIVT01025710001" /db_xref="TAIR:AT2G37025.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TQN4" /translation="MKTDRKPHLIKKLSDMKRQRVDESIVPGLEDEATEVEHLLAEPK SEHVSVDGVLCFGKENLEKHLKMEDFSCAFDYGWKINCGGLDSIHGQGGDDLKLEVLD GLLDEVDEVDDIHAAHDLSGACEDFLLDIEFPEKFSELEPCEGSNLHNSSSESHSPGF SGSSNSAGGISESSIAAVQESNGRNGVLGKMVNCDVHQTFRSKCGCQAPVMDTIHPTI ENMQDLDQSDDDEKPLVSFILSNKKVKSSVKVTKGGTLLRQKRVRKPTRRYIEEFSRN STASGKNKRLKVRSQELPQVPSESRPRRGRPRKIVPKLELESDYELSASESEDEHKRS KRSKTACDRRKHQRMWTLAEVIKLVDGIAQYGVGRWTDIKRLLFASSAYRTPVDLRDK WRNLLRSSSALKHNRREVENDLKHAVRPLPKPVVRRIRELATIHPYPRVRSPKISPVD APSSKHPTTTKGAPVYPHARNLRRKKCS" CDS complement(join(3071470..3071679,3072179..3072238, 3072322..3072549,3073120..3073673,3073782..3073872, 3074078..3074127,3074941..3075127,3076351..3076410)) /locus_tag="TCM_022189" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="TRF-like 8, putative isoform 2" /protein_id="EOY07869.1" /db_xref="Phytozome:GSVIVT01025710001" /db_xref="TAIR:AT2G37025.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TQN4" /translation="MKTDRKPHLIKKLSDMKRQRVDESIVPGLEDEATEVEHLLAEPK SEHVSVDGVLCFGKENLEKHLKMEDFSCAFDYGWKINCGGLDSIHGQGGDDLKLEVLD GLLDEVDEVDDIHAAHDLSGACEDFLLDIEFPEKFSELEPCEGSNLHNSSSESHSPGF SGSSNSAGGISESSIAAVQESNGRNGVLGKMVNCDVHQTFRSKCGCQAPVMDTIHPTI ENMQDLDQSDDDEKPLVSFILSNKKVKSSVKVTKGGTLLRQKRVRKPTRRYIEEFSRN STASGKNKRLKVRSQELPQVPSESRPRRGRPRKIVPKLELESDYELSASESEDEHKRS KRSKTACDRRKHQRMWTLAEVIKLVDGIAQYGVGRWTDIKRLLFASSAYRTPVDLRDK WRNLLRSSSALKHNRREVVENDLKHAVRPLPKPVVRRIRELATIHPYPRVRSPKISPV DAPSSKHPTTTKGAPVYPHARNLRRKKCS" misc_feature complement(join(3073848..3073872,3074078..3074891)) /locus_tag="TCM_022189" /note="Gene fragment of Thecc1EG022189t1; dbxref gnl|CacaoGD|Thecc1EG022189t1; quality class is mediumpartial-partof is thecc1eg022189t1, express is strong, homology is none, intron is medium, protein is utrpoor_complete; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1482t1; dbxref CacaoGD:Thecc1EG022190t1" mobile_element complement(3075451..3076033) /note="source:CACAO_MITE153_scaffold_9 132 727" /mobile_element_type="transposon:TIR/MITE" gene complement(3078474..3081042) /locus_tag="TCM_022191" /note="dbxref CacaoGD:Thecc1EG022191" mRNA complement(join(3078474..3079151,3079251..3079386, 3079682..3079707,3080136..3080183,3080278..3080393, 3080487..3080583,3080667..3081041)) /locus_tag="TCM_022191" /product="Translin family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s12810.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s12810.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2116t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13398t1" mRNA complement(join(3078538..3079151,3079251..3079386, 3079682..3079707,3080139..3080183,3080278..3080393, 3080487..3080583,3080667..3081042)) /locus_tag="TCM_022191" /product="Translin family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s12810.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s12810.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13398t1" CDS complement(join(3079039..3079151,3079251..3079386, 3079682..3079707,3080139..3080183,3080278..3080393, 3080487..3080583,3080667..3081036)) /locus_tag="TCM_022191" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Translin family protein isoform 1" /protein_id="EOY07870.1" /db_xref="Phytozome:POPTR_0006s12810.1" /db_xref="TAIR:AT2G37020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HR38" /translation="MKAAFRNAYCFTLSRYSINPNPTILHLVPAISTFPSLPSSVFKN PPFRSPVTATLCSTSMASGDSDAPQTSPSLEKQFEKFRVQLEDSGSLRERIRAVVLEI ESATRLMQASLLLVHQSKPIPEVLEKAKTQINVLKDLFNKLAEVVRECPGQYYRYHGD WRTETQMVVSLLAFMHWLETGTLLMHTEAEEKLGLNDSDFGLDVEDYLVGICFMSNEM PRYVVNQVTAGDYDCPRKVLKFLTDLHAAFRMLNLRNDFLRKKFDTMKYDLRRVEEVY YDVKIRGLATSGDSVEDQGTQGQP" CDS complement(join(3079039..3079151,3079251..3079386, 3079682..3079707,3080136..3080183,3080278..3080393, 3080487..3080583,3080667..3081036)) /locus_tag="TCM_022191" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Translin family protein isoform 2" /protein_id="EOY07871.1" /db_xref="Phytozome:POPTR_0006s12810.1" /db_xref="TAIR:AT2G37020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HR38" /translation="MKAAFRNAYCFTLSRYSINPNPTILHLVPAISTFPSLPSSVFKN PPFRSPVTATLCSTSMASGDSDAPQTSPSLEKQFEKFRVQLEDSGSLRERIRAVVLEI ESATRLMQASLLLVHQSKPIPEVLEKAKTQINVLKDLFNKLAEVVRECPGQYYRYHGD WRTETQMVVSLLAFMHWLETGTLLMHTEAEEKLGLNDSDFGLDVEDYLVGSICFMSNE MPRYVVNQVTAGDYDCPRKVLKFLTDLHAAFRMLNLRNDFLRKKFDTMKYDLRRVEEV YYDVKIRGLATSGDSVEDQGTQGQP" gene complement(3081829..3091359) /locus_tag="TCM_022192" /note="dbxref CacaoGD:Thecc1EG022192" mRNA complement(join(3081829..3082715,3082861..3082994, 3083092..3083381,3083555..3083703,3084204..3084677, 3085324..3085620,3086219..3087126,3087424..3087497, 3088081..3088115,3088273..3088419,3088521..3088584, 3089545..3089820,3090355..3090431,3090547..3091359)) /locus_tag="TCM_022192" /product="Non-intrinsic ABC protein 12 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s12800.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042114t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s12800.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1743t7" CDS complement(join(3082559..3082715,3082861..3082994, 3083092..3083381,3083555..3083703,3084204..3084677, 3085324..3085620,3086219..3087126,3087424..3087497, 3088081..3088115,3088273..3088419,3088521..3088584, 3089545..3089820,3090355..3090431,3090547..3090761)) /locus_tag="TCM_022192" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042114t1" /codon_start=1 /product="Non-intrinsic ABC protein 12 isoform 1" /protein_id="EOY07872.1" /db_xref="Phytozome:POPTR_0006s12800.1" /db_xref="TAIR:AT2G37010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SJK6" /translation="MREVRPHALFFLLVVLSLFPFARSVDGDDYSQTKNPAYLPLVTD LIYRRLSNLTVTLSNDISRNLGFCIKNAKADWNGAFNFSRNLNFLTNCVKKTKGDLTH RLCTAAEIKFYFSSLFAKGTETINYVKPNKNCNLTTWVSGCEPGWGCYADQNQHFELK NSTYMPTRTQNCQPCCEGFFCPRGLACMIACPSGSYCPLAKLNTSSGVCDPYNYQIPP GLPNHSCGGADMWADVASSSEIFCSPGSYCPSTINRVTCSSGHYCRMGSTSQLPCFKL TTCNPNTSNQDIHGYGIMLFVGMSLLLLIIYNCSDQVISTRERRQAKSREAAARHARE TAQARERWKAAKNIAKKGGWQQQLSRTFSRAKSTRRQEQQKNFGLGKSVKIDTQSPPV PPRVSGQSSTDSKAKKKEPSSLTKMLHSLEEDPKSHEGFNLNIRDKNIKKQAPRGKQL HTQSQIFKYAYGQIEKEKAQQNKNLTFSGIISMATDNDIRTRPVIEISFKDLTLTLKG KQKHLLKCVTGKLMPGRVSAVMGPSGAGKTTFLSALTGKATGCNVTGLILINGKNEPI QSYKKIIGFVPQDDIVHGNLTVEENLRFSARCRLSADMAKPDKVLVIERVIESLGLQA VRDSVVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTTGLDSSSSQLLLRALRR EALEGVNICMVLHQPSYALFKMFDDLILLAKGGLTAYHGSVKKVEEYFAGMGINVPDR VNPPDHFIDILEGIVKPTGVTREQLPIRWMLHNGYPIPSDMLQLADGLTTPSAGSNPS TSGAAAVGQSFAGELWEDVKFNVEVKRDQIQNDYSKSKDLSNRRTPGIARQYRYFLGR VTKQRLREAQMQAVDLMILLLAGACLGTLAKVNDETFGSLGYTYTVIAISLLCKIAAL RSFSLDKLQYQRESASGISSLAYFLSKDTVDHFNTIFKPVAYLSMFYFFSNPRSTFQD NYIVLLCLVYCVTGIAYILAILLAPSLAQLWAVLLPVVLTLTANQDKDSAIVKYFGNF CYTKWALEAFVIANAERYSGVWLITRCGSLNQSGYDLHDWNLCLIILVINGIVARILA FFMLVTFRKK" mRNA complement(join(3083802..3083825,3084204..3084677, 3085324..3085620,3086219..3087126,3087424..3087497, 3088081..3088115,3088273..3088419,3088521..3088584, 3089545..3089820,3090355..3090431,3090547..3091163)) /locus_tag="TCM_022192" /product="Non-intrinsic ABC protein 12 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s12800.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042114t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s12800.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1743t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1743t7; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc2606t5_C2" CDS complement(join(3083804..3083825,3084204..3084677, 3085324..3085620,3086219..3087126,3087424..3087497, 3088081..3088115,3088273..3088419,3088521..3088584, 3089545..3089820,3090355..3090431,3090547..3090761)) /locus_tag="TCM_022192" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042114t1" /codon_start=1 /product="Non-intrinsic ABC protein 12 isoform 2" /protein_id="EOY07873.1" /db_xref="Phytozome:POPTR_0006s12800.1" /db_xref="TAIR:AT2G37010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SJK6" /translation="MREVRPHALFFLLVVLSLFPFARSVDGDDYSQTKNPAYLPLVTD LIYRRLSNLTVTLSNDISRNLGFCIKNAKADWNGAFNFSRNLNFLTNCVKKTKGDLTH RLCTAAEIKFYFSSLFAKGTETINYVKPNKNCNLTTWVSGCEPGWGCYADQNQHFELK NSTYMPTRTQNCQPCCEGFFCPRGLACMIACPSGSYCPLAKLNTSSGVCDPYNYQIPP GLPNHSCGGADMWADVASSSEIFCSPGSYCPSTINRVTCSSGHYCRMGSTSQLPCFKL TTCNPNTSNQDIHGYGIMLFVGMSLLLLIIYNCSDQVISTRERRQAKSREAAARHARE TAQARERWKAAKNIAKKGGWQQQLSRTFSRAKSTRRQEQQKNFGLGKSVKIDTQSPPV PPRVSGQSSTDSKAKKKEPSSLTKMLHSLEEDPKSHEGFNLNIRDKNIKKQAPRGKQL HTQSQIFKYAYGQIEKEKAQQNKNLTFSGIISMATDNDIRTRPVIEISFKDLTLTLKG KQKHLLKCVTGKLMPGRVSAVMGPSGAGKTTFLSALTGKATGCNVTGLILINGKNEPI QSYKKIIGFVPQDDIVHGNLTVEENLRFSARCRLSADMAKPDKVLVIERVIESLGLQA VRDSVVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTTGLDSSSSQLLLRALRR EALEGVNICMVLHQPSYALFKMFDDLILLAKGGLTAYHGSVKKVEEYFAGMGINVPDR VNPPDHFIDILEGIVKPTGVTREQLPIRWMLHNGYPIPSDMLQLADGLTTPSAGSNPS TSGAAAVGQSFAGELWEDVKFNVEVKRDQIQNDYSKSKDLSNRRTPGIARQYRYFLGR LNFLKF" gene 3091986..3095901 /locus_tag="TCM_022193" /note="dbxref CacaoGD:Thecc1EG022193" mRNA join(3091986..3092326,3092848..3093332,3093993..3094253, 3094542..3094664,3095183..3095901) /locus_tag="TCM_022193" /product="Kinase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g06540.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043208t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s12790.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc837t3" CDS join(3092952..3093332,3093993..3094253,3094542..3094664, 3095183..3095692) /locus_tag="TCM_022193" /note="paralog of Thecc1EG043208t1" /codon_start=1 /product="Kinase superfamily protein" /protein_id="EOY07874.1" /db_xref="Phytozome:POPTR_0006s12790.1" /db_xref="TAIR:AT3G09830.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9DGR0" /translation="MKCFIFPSWDKKDESKTPKSVSTRSMNSIFTDREIGRSGSELNS QNVSGVSNESMGRSSFPSMSQRPSNLRVFTVSELKSATKNFSRSVMVGEGGFGCVYKG FLKSPDDSSQKIEVAVKQLGKRGLQGHKEWVTEVNVLGVVEHPNLVKLVGYCAEDDER GIQRLLIYEYMPNRSVENYLSVRSETTLSWEMRLKIAQDAARGLAYLHEGMDFQIIFR DLKSSNILLDEQWNAKLSDFGLARLGPSEGLTHVSTAVVGTMGYAAPEYIQTGRLTSK IDVWSYGVFLYELITGRRPLDKNRPKNEQKLLDWVKPYLSDAKKFQFILDPRLKGKCQ LKSAQRLATVANRCLVRNPKSRPKMSEVLEMVNRVVEASAGSGSPEPLLKTLPSVETS GETGRKHRRRIIDFRSGEKFVWPWTPKLVRAC" mobile_element 3093460..3093505 /note="source:CACAO_M_E9395_F12_scaffold_2 20596 20643" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 3096892..3101782 /locus_tag="TCM_022194" /note="dbxref CacaoGD:Thecc1EG022194" mRNA join(3096892..3097283,3098585..3098959,3099052..3099215, 3099352..3099425,3099573..3099627,3099744..3099818, 3099927..3100000,3100094..3100142,3100596..3100680, 3101012..3101068,3101445..3101524) /locus_tag="TCM_022194" /product="Cysteine-type peptidase, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g06530.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042115t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s11360.3" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13403t1" CDS join(3098635..3098959,3099052..3099215,3099352..3099425, 3099573..3099627,3099744..3099818,3099927..3100000, 3100094..3100142,3100596..3100680,3101012..3101068, 3101445..3101500) /locus_tag="TCM_022194" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042115t1" /codon_start=1 /product="Cysteine-type peptidase, putative isoform 1" /protein_id="EOY07875.1" /db_xref="Phytozome:POPTR_0016s11360.3" /db_xref="TAIR:AT5G03330.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S0J2" /translation="MIMYQQDSDIVHWFLGCDPFYHSAYNSDIIQHDAGDIYHHAHYF RDHTDTESTQIENDEVIARTLQEEFSHLAVSEASKSFHSGEQQLQSYSEPHDWHSSST GDYYYSGYEYGQDGSSDLVPLSSCSSPSDSEDFSCSLELTDGYLLDDDEVGKRLNQMI PIPHVPRINGEIPSINEAMSDHERLLNRLQAYGFVELKVQGDGNCQFRALSDQLYHTP DNHKYVRRQVVNQLKSHPETYEGYVPMDYADYLKKMSKSGEWGDHVTLQAAADSYGVR IFVITSFKDTCYIEILPNFQKSKGVIFLSFWAEVHYNSIYIQGDLPSVEVPRKRKWWN FGN" mRNA join(<3098782..3098959,3099052..3099215,3099352..3099425, 3099573..3099627,3099744..3099818,3099927..3100000, 3100094..3100142,3100596..3100680,3101012..3101068, 3101445..3101782) /locus_tag="TCM_022194" /product="Cysteine-type peptidase, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g06530.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042115t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s11360.3" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g04283t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13403t1" CDS join(<3098782..3098959,3099052..3099215,3099352..3099425, 3099573..3099627,3099744..3099818,3099927..3100000, 3100094..3100142,3100596..3100680,3101012..3101068, 3101445..3101500) /locus_tag="TCM_022194" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042115t1" /codon_start=1 /product="Cysteine-type peptidase, putative isoform 2" /protein_id="EOY07876.1" /db_xref="Phytozome:POPTR_0016s11360.3" /db_xref="TAIR:AT5G03330.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S0J2" /translation="TESTQIENDEVIARTLQEEFSHLAVSEASKSFHSGEQQLQSYSE PHDWHSSSTGDYYYSGYEYGQDGSSDLVPLSSCSSPSDSEDFSCSLELTDGYLLDDDE VGKRLNQMIPIPHVPRINGEIPSINEAMSDHERLLNRLQAYGFVELKVQGDGNCQFRA LSDQLYHTPDNHKYVRRQVVNQLKSHPETYEGYVPMDYADYLKKMSKSGEWGDHVTLQ AAADSYGVRIFVITSFKDTCYIEILPNFQKSKGVIFLSFWAEVHYNSIYIQGDLPSVE VPRKRKWWNFGN" gene complement(3101633..3103152) /locus_tag="TCM_022197" /note="dbxref CacaoGD:Thecc1EG022197" mRNA complement(3101633..3103152) /locus_tag="TCM_022197" /product="Proliferating cell nuclear antigen gene-controlling element binding factor, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g20710.1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400037397" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc473t13" CDS complement(3102445..3103089) /locus_tag="TCM_022197" /codon_start=1 /product="Proliferating cell nuclear antigen gene-controlling element binding factor, putative" /protein_id="EOY07877.1" /db_xref="Phytozome:PGSC0003DMP400037397" /db_xref="TAIR:AT2G37000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D1MJ53" /translation="MGSEMALHKFSTANHNHQNSNINSVVSDESTPKTQLALPTRKPV SSLSKDRHTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAA TGSGTVPAAHEISCPAGPTMTSASPPSVSCQVHPVGVGSGSVVAGMYTMTAPPPNCRL DLCQPVGFQYSAVGRSGYQHMPFTALLLQPTTAAEEVEERQRVEDEEEEIRHHE" mobile_element complement(3104614..3104780) /note="source:scaffold_7_CACTA_0795 3106 3273" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3104793..3104919 /note="source:CACAO_PIF_E119_scaffold_3 4369 4478" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 3106014..3109978 /locus_tag="TCM_022198" /note="dbxref CacaoGD:Thecc1EG022198" mRNA join(3106014..3106338,3106837..3106994,3107141..3107262, 3107383..3107580,3107661..3107934,3108030..3108401, 3108686..3108886,3109077..3109978) /locus_tag="TCM_022198" /product="RNA polymerase sigma factor rpoD, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025717001" /inference="similar to AA sequence:Phytozome:GSVIVT01025717001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaL_g06523t00001" CDS join(3106245..3106338,3106837..3106994,3107141..3107262, 3107383..3107580,3107661..3107934,3108030..3108401, 3108686..3108886,3109077..3109364) /locus_tag="TCM_022198" /codon_start=1 /product="RNA polymerase sigma factor rpoD, putative" /protein_id="EOY07878.1" /db_xref="Phytozome:GSVIVT01025717001" /db_xref="TAIR:AT2G36990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S0J0" /translation="MEAARNLLSPPPTFSTRTQLKSSVFSTSSSSVLMFHEQAAPAAT SIPITSVARHFPTSVLLQEQRDDYRPLPVLHFFKEDKAYPGATDKQQIENGASLNEEN ASNNFGQLGFEKKLLQWPDLTQLLSLLESEENPSSTSNMQSVAADTKEIVDVEPSNIV ALAKKALSASKQAASLSEDLKLDLDDSLSNSLGSANSCTLPVEKEEVVTVRSTRRLER QSKRRRVQPKVTIRETYSSRRTDVRRKLSEGFDPNDPLRLFLWGPETKQLLTAKEESE LSNQVQNLMRLEKVKSKLQSQFGREPTLVEWAEAIGLRCSALQAELHSGNSSRDKLIY ANLRMVVHIAKQYQSRGLSLQDLLQEGSMGLMKSVERFKPQVGCRFATYAYWWIRQTI RKSIMQHSRTVRLPENVHTLLSKVLDAKKSYIREGNHCPSKEELARRVGITVEKLDKL LFTTRMPLSMQQSVWVDQDITFQEVTPDTGIEIPDVSVAKQLMRQHVRNLLSVLSPRE RTIIKLRFGIEESKENSLSEIGNMFGLSKERVRQLESRALYKLKQCLNKHGLGAYVDL LV" gene 3109972..3113174 /locus_tag="TCM_022199" /note="dbxref CacaoGD:Thecc1EG022199" mRNA join(3109972..3112073,3112254..3112361,3112439..3113174) /locus_tag="TCM_022199" /product="Pentatricopeptide repeat superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30156.m001751" /inference="similar to AA sequence:ricco:30156.m001751" /note="quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1880t1" CDS join(3110238..3112073,3112254..3112361,3112439..3112726) /locus_tag="TCM_022199" /note="dbxref ricco:30156.m001751" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein, putative" /protein_id="EOY07879.1" /db_xref="TAIR:AT2G32630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8S8P6" /translation="MSTEKLSQMLKEAVSSNRTSLTNQKTAAKITTILIKSGLKPFKT NPSLLSNLDSNVTSLILSNPNLPLQSCTLFFNFLKTNLSLTSQKPSLKTHIAIILRLY KAGKFKEIKEVLKFIIFDDNLRYPVEEMISLVGFECNDSNFLEKFCDLYFRVCVDNKM FEEANGVFGYMEKMGFKIDERSCILYLIALKKCGKGDSLLGVFRRMVESGVEVSVYSM TIVIDGLCNRGEVEKGRELMNEMVNKGVKANVITYNTILNAYIKTKDFGVVTEVLRLM EKENVEYNAATYTVLIEYFGSVGKHEDVEKLFDEMRERRVEMDVHLYTSMISWHCRRG NIKRAVSLFDDLTEKGLVPNAHVYGALIDGLCKTEQMEAAQMMVNDMQSQGIDVNQVV FNTLLHGYCRKGMMDDALSRLAAMEKKGLQPDVFTYNTIASGMSKLKRHEEAKRWLFM MVEKGVTPNVVNFTTLIDIHCKEGNFVEAKRLFQQMERRGERPDTITYNALIDGYTKK GKLKDAYKVRDEMEAKGRIPDVYTYTSLVHGECIYGKVDEAMKLFNEMHQKGLVPNVV TYTAIISGLSKEGRSDEAFRLYNEMINVGHMPDQRVYSALVGSLHTDFNQRTFLFKKN ACERICLPNHVAQDSLKASMAELEASLRCWSSHPTAIDAAPGKYVSTVGNQIIWLWNP CKFVSFMTSIINVTKLYAAWIALDLMFLLKSVCLLREVSSVDEEDLRETETPNFIMNF SGL" gene 3113217..3115501 /locus_tag="TCM_022200" /note="dbxref CacaoGD:Thecc1EG022200" mRNA join(3113217..3113780,3113856..3115231,3115470..3115501) /locus_tag="TCM_022200" /product="UDP-Glycosyltransferase superfamily protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022335t1" /inference="similar to AA sequence:frave:gene18452" /note="quality class is medium-utrpoor, express is strong, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage" CDS 3114421..3114855 /locus_tag="TCM_022200" /note="dbxref frave:gene18452; paralog of Thecc1EG022335t1" /codon_start=1 /product="UDP-Glycosyltransferase superfamily protein, putative" /protein_id="EOY07880.1" /db_xref="TAIR:AT2G36780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HR47" /translation="MSPGHLVPMIDMARLVATHGSKATVITTPRNISRFQTILNGDHQ SGNLQINLLTLDFHFSAADLFETSENLDTLSSRHLSYNFSKAIMTLQPQADDLVSQYK PDAIISDQNIPWTAEIAQNYVIPGLVFHGTCCLNLSLLNGCS" gene 3115636..3116494 /locus_tag="TCM_022201" /note="dbxref CacaoGD:Thecc1EG022201" mRNA join(3115636..3115925,3116043..3116494) /locus_tag="TCM_022201" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is weak, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.23 coverage" CDS 3116046..3116270 /locus_tag="TCM_022201" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07881.1" /translation="MNMMCSGQFVVYFVLRLRRVCLFVESVEGGFSVYIASEEYWGGR GRPGISSFLYRFLGTGHVVLIQGGYLLSEE" gene complement(3117052..3120176) /locus_tag="TCM_022202" /note="dbxref CacaoGD:Thecc1EG022202" mRNA complement(join(3117052..3118226,3118614..3118652, 3119189..3119246,3119321..3119453,3119868..3120176)) /locus_tag="TCM_022202" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027039t1" /note="quality class is medium-utrpoor, express is strong, homology is paralog medium, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.76 coverage" mobile_element complement(3117469..3118245) /note="source:scaffold_6_CACTA_0699 13002 13800" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(3117922..3118226,3118614..3118652, 3119189..3119246)) /locus_tag="TCM_022202" /note="paralog of Thecc1EG027039t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07882.1" /translation="MDDLKPGIMKMGFKSHWPWTDCSFQPLIAATPGVSWQPSKDGDL KFNVDSSTKGKPKPVGCGGNLKNSDRFVVGVFFGLLDCQESNLAELLAIPYALQLFAS SPYYRSNLIIESDSKVALSWINNESHQLWNF" gene complement(3118482..3142221) /locus_tag="TCM_022204" /note="dbxref CacaoGD:Thecc1EG022204" mRNA complement(join(3118482..3118850,3119090..3119614, 3137440..3138070,3138189..3138548,3138729..3139010, 3139112..3139183,3139290..3139511,3139621..3140387, 3141012..3141240,3141758..3141923,3142007..3142119)) /locus_tag="TCM_022204" /product="ATPase, AAA-type, CDC48 protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g33990.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042132t1" /inference="similar to AA sequence:ricco:30078.m002300" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2625t2" mobile_element complement(3119009..3119069) /note="source:CACAO_hAT_E938_scaffold_2 118 179" /mobile_element_type="transposon:TIR/hAT" mobile_element 3120481..3120543 /note="source:CACAO_M_S_E6117_F51_scaffold_2 1130 1188" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3120495..3120566 /note="source:CACAO_M_E49559_F88_scaffold_7 7666 7741" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 3122747..3123438 /note="source:MITE_Unknow_2_6 1 692" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(3123343..3123449) /note="source:scaffold_4_CACTA_0510 2100 2219" /mobile_element_type="transposon:TIR/CACTA" gene complement(3123452..3126318) /locus_tag="TCM_022205" /note="dbxref CacaoGD:Thecc1EG022205" mRNA complement(join(3123452..3123555,3124346..3124564, 3124624..3124838,3125913..3125955,3126117..3126318)) /locus_tag="TCM_022205" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.26 coverage" CDS complement(join(3123517..3123555,3124346..3124564, 3124624..3124838,3125913..3125955,3126117..3126293)) /locus_tag="TCM_022205" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07885.1" /translation="MNNEETRPWTHRKIFVEIDKLRETFGAVTVNHIFGEAKGVGDSL AKMGIGREENVHSIMVLCQYTCCNHASHVNVGAPSMVPMCLLAQPLKFDLRAGISRSF SRMICNLVLGLLEGFGHVNVGDFWMWVEPLWEWNIATHVLMGMPHDALELGCYGAAFG RPTMRFDILVIGLSRNGGMTKMMNKVFICLSLSGIDSKLPLTTRYWACKLNWLTNNAE LMIDAFKGRLSP" mobile_element complement(3125428..3125477) /note="source:scaffold_7_CACTA_0779 8728 8775" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3131465..3131522) /note="source:CACAO_M_E43428_F369_scaffold_5 1286 1331" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3131480..3131540 /note="source:CACAO_on_E1_scaffold_1 81 138" /mobile_element_type="transposon:TIR/hAT" mobile_element 3134224..3134305 /note="source:CACAO_M_E72142_F322_scaffold_10 685 770" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA complement(join(3137322..3138069,3138430..3138548, 3138729..3139010,3139112..3139183,3139290..3139511, 3139621..3140387,3141012..3141240,3141758..3141923, 3142007..3142221)) /locus_tag="TCM_022204" /product="ATPase, AAA-type, CDC48 protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g33990.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042132t1" /inference="similar to AA sequence:ricco:30078.m002298" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc174t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2625t2; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc176t16" CDS complement(join(3137780..3138070,3138189..3138548, 3138729..3139010,3139112..3139183,3139290..3139511, 3139621..3140387,3141012..3141240,3141758..3141923, 3142007..3142035)) /locus_tag="TCM_022204" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30078.m002300; paralog of Thecc1EG042132t1" /codon_start=1 /product="ATPase, AAA-type, CDC48 protein isoform 1" /protein_id="EOY07883.1" /db_xref="TAIR:AT5G03340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P55072" /translation="MSNQAESSDSKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVV SLHPDTMEKLQLFRGDTILIKGKKRKDTICIALADDTCDEPKIRMNKVVRSNLRVRLG DVVSVHQCPDVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVR GGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRREDENRLDEVGYDDVGGVRKQMA QIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGP EIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLT LMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNM KLAEDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDESIDAEILNSMA VSNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFE KFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREI FDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII GATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVAKEVDLRALAKY TQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMEEDVEDDVAEIKPAHF EESMKFARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFAETGSRAAASDPFAASAGGA DEDDLYS" CDS complement(join(3138039..3138069,3138430..3138548, 3138729..3139010,3139112..3139183,3139290..3139511, 3139621..3140387,3141012..3141240,3141758..3141923, 3142007..3142035)) /locus_tag="TCM_022204" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30078.m002298; paralog of Thecc1EG042132t1" /codon_start=1 /product="ATPase, AAA-type, CDC48 protein isoform 2" /protein_id="EOY07884.1" /db_xref="TAIR:AT3G53230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P55072" /translation="MSNQAESSDSKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVV SLHPDTMEKLQLFRGDTILIKGKKRKDTICIALADDTCDEPKIRMNKVVRSNLRVRLG DVVSVHQCPDVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVR GGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRREDENRLDEVGYDDVGGVRKQMA QIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGP EIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLT LMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNM KLAEDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDESIDAEILNSMA VSNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFE KFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREI FDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII GATNRYREGKEKKG" mobile_element complement(3143382..3143533) /note="source:INTACT446_F218_scaffold_9-int 7174 7322" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(3145417..3146140) /note="source:scaffold_3_CACTA_0398 3292 4046" /mobile_element_type="transposon:TIR/CACTA" gene complement(3146049..3148212) /locus_tag="TCM_022206" /note="dbxref CacaoGD:Thecc1EG022206" mRNA complement(join(3146049..3147165,3147273..3148212)) /locus_tag="TCM_022206" /product="UDP-Glycosyltransferase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400037372.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042134t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400037372" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2118t1" CDS complement(join(3146240..3147165,3147273..3147801)) /locus_tag="TCM_022206" /note="paralog of Thecc1EG042134t1" /codon_start=1 /product="UDP-Glycosyltransferase superfamily protein" /protein_id="EOY07886.1" /db_xref="Phytozome:PGSC0003DMP400037372" /db_xref="TAIR:AT2G36970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HR50" /translation="MEKNHQKPHAIMIAYPLQGHVIPSVQLAMKLASKGFTITFVNTQ SIHHQITKSHPNTTTSDAEDIFTEARKSGLDIRYNVVSDGFPLGFDRSLNHDQFLEGV LHVMSAHIDELVANTIKTNPPPTCLIADTFFVWSSMISNKYNLVNVSFWTEPALVFTL YYHLDLLRSNGHFASIDNRDDVIDYIPGVRAVEPKDLMSYLQASDISTVVHRIIFKAF EDVKKADFIICNTVQELEHETISALNKKQPTYAIGPIFRTGFTKSVVATSLWSESDCT QWLDTKRNGSVLYISFGSYAHASKNDIAEIAHGLLLSGVSFIWVLRPDIVCSGETDFL PVGFEENIKGTGMIVPWCCQIAVISHPAVGGFLTHCGWNSILESVWCTVPLICFPLLT DQFTNRKLAVDDWKIGLNLSDKKQINRDEVVEKIHRLISRKSGDDLRKNIKEVKKKLE NALSTVGSSEENFNQFICDVQIKTKKKRASANHA" mobile_element 3148109..3148436 /note="source:scaffold_8_CACTA_0867 7881 8216" /mobile_element_type="transposon:TIR/CACTA" gene complement(3148770..3155799) /locus_tag="TCM_022207" /note="dbxref CacaoGD:Thecc1EG022207" mRNA complement(join(3148770..3149811,3150010..3150150, 3150232..3150648,3151170..3151542,3151631..3151869, 3151970..3152052,3152230..3152361,3152685..3152964, 3153066..3153150,3153582..3153691,3153799..3153846, 3153921..3154003,3154129..3154322,3155654..3155752)) /locus_tag="TCM_022207" /product="TSL-kinase interacting protein 1, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s12730.1" /inference="similar to AA sequence:Phytozome:GSVIVT01025725001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:PASA:2:TSA:puevd3b021495t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2151t4" mRNA complement(join(3148770..3149811,3150010..3150150, 3150232..3150648,3151170..3151542,3151631..3151869, 3151970..3152127,3152230..3152361,3152685..3152964, 3153066..3153150,3153582..3153691,3153799..3153846, 3153921..3154003,3154129..3154322,3155654..3155752)) /locus_tag="TCM_022207" /product="TSL-kinase interacting protein 1, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s12730.1" /inference="similar to AA sequence:Phytozome:GSVIVT01025725001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2151t4" mobile_element complement(3149225..3149286) /note="source:CACAO_PIF_E144_scaffold_10 5992 6053" /mobile_element_type="transposon:TIR/PIF-Harbinger" CDS complement(join(3149587..3149811,3150010..3150150, 3150232..3150648,3151170..3151542,3151631..3151869, 3151970..3152052,3152230..3152361,3152685..3152964, 3153066..3153150,3153582..3153691,3153799..3153846, 3153921..3154003,3154129..3154255)) /locus_tag="TCM_022207" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="TSL-kinase interacting protein 1, putative isoform 2" /protein_id="EOY07888.1" /db_xref="Phytozome:GSVIVT01025725001" /db_xref="TAIR:AT2G36960.3" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TQP7" /translation="MQTESQVSLASEANCHQEHIPIQIGDPCVASSTPNNAVPEQPAK KPTRQWAAWTRQEEESFFTALRQVGKNFEKITCRVQSKNKDQVRHYYYRLVRRMNKLL GPGLCLDAKNSKDTNAAMLRWWSLLEKYSCRASKLHLKPRRFKIFVEALEHQLLKDRK KNVRKRPSQGENSSPTSPSTVTNQSRASGHDARTVKLVLVDSQNIQKLGPGKGSFKRN TNVGVNRSNSKGESNTMKPARQRRKPGSSSAAYKKWEKAAIAGVSLVADAAEHLERTT TDKEAEHDQDSSVESNIHSAGKLKLQLFPIDDSTRRALEMDKHNPHLELTLSTRKKIS SVLEHLTRKWGNSSVASGELMLFPYGVQRENLMGYQRWTQASIVSAADVYAMIGSPQV FRLRYGWFSDAEVASLTWQAPVSSYIPSEHNVNVEGRNGCIAEEVQVSALSTSDQSKK LDDPCNNQPTLRKENHALQPPLTNFPSEISRFICAGPKDNLGDSPIPVRHASADRSET CNVAILRQLEDVDDQRLNNNTAALSAGEWADSLTNISVGDLLAEVPHDLDDNCVDHPV AESSQCLQQIPFSCDSFDAAIAAHISRHQNKMEVPSLASHPSSIWDAEETCDAFSFSK NHIPCADVPRLSSAVAAACKQITRSNSAGSGTLNKLLPQESPDLEEPMENSACEDLVD ESPSDPHIMDTTEKDFNGLTDIYWPDSLGPLDLDVPSCKYHNEDLILGDSLGGLNRLI ASSLDAFQNCSFFGLDKKESTSTVGARDTASSAFKIGSEG" CDS complement(join(3149587..3149811,3150010..3150150, 3150232..3150648,3151170..3151542,3151631..3151869, 3151970..3152127,3152230..3152361,3152685..3152964, 3153066..3153150,3153582..3153691,3153799..3153846, 3153921..3154003,3154129..3154255)) /locus_tag="TCM_022207" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="TSL-kinase interacting protein 1, putative isoform 1" /protein_id="EOY07887.1" /db_xref="Phytozome:GSVIVT01025725001" /db_xref="TAIR:AT2G36960.3" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TQP7" /translation="MQTESQVSLASEANCHQEHIPIQIGDPCVASSTPNNAVPEQPAK KPTRQWAAWTRQEEESFFTALRQVGKNFEKITCRVQSKNKDQVRHYYYRLVRRMNKLL GPGLCLDAKNSKDTNAAMLRWWSLLEKYSCRASKLHLKPRRFKIFVEALEHQLLKDRK KNVRKRPSQGENSSPTSPSTVTNQSRASGHDARTVKLVLVDSQNIQKLGPGKGSFKRN TNVGVNRSNSKGESNTMKPARQRRKPGSSSAAYKKWEKAAIAGVSLVADAAEHLERTT TDKEAEHDQDSSVPGHKILDPVETNQPPLPVFSQNPLVESNIHSAGKLKLQLFPIDDS TRRALEMDKHNPHLELTLSTRKKISSVLEHLTRKWGNSSVASGELMLFPYGVQRENLM GYQRWTQASIVSAADVYAMIGSPQVFRLRYGWFSDAEVASLTWQAPVSSYIPSEHNVN VEGRNGCIAEEVQVSALSTSDQSKKLDDPCNNQPTLRKENHALQPPLTNFPSEISRFI CAGPKDNLGDSPIPVRHASADRSETCNVAILRQLEDVDDQRLNNNTAALSAGEWADSL TNISVGDLLAEVPHDLDDNCVDHPVAESSQCLQQIPFSCDSFDAAIAAHISRHQNKME VPSLASHPSSIWDAEETCDAFSFSKNHIPCADVPRLSSAVAAACKQITRSNSAGSGTL NKLLPQESPDLEEPMENSACEDLVDESPSDPHIMDTTEKDFNGLTDIYWPDSLGPLDL DVPSCKYHNEDLILGDSLGGLNRLIASSLDAFQNCSFFGLDKKESTSTVGARDTASSA FKIGSEG" mRNA complement(join(3149717..3149741,3150010..3150150, 3150232..3150648,3151170..3151542,3151631..3151869, 3151970..3152052,3152230..3152361,3152685..3152964, 3153066..3153150,3153582..3153691,3153799..3153846, 3153921..3154003,3154129..3154322,3155654..3155799)) /locus_tag="TCM_022207" /product="TSL-kinase interacting protein 1, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s12730.1" /inference="similar to AA sequence:Phytozome:GSVIVT01025725001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc288t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2151t4" CDS complement(join(3149721..3149741,3150010..3150150, 3150232..3150648,3151170..3151542,3151631..3151869, 3151970..3152052,3152230..3152361,3152685..3152964, 3153066..3153150,3153582..3153691,3153799..3153846, 3153921..3154003,3154129..3154255)) /locus_tag="TCM_022207" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="TSL-kinase interacting protein 1, putative isoform 3" /protein_id="EOY07889.1" /db_xref="Phytozome:GSVIVT01025725001" /db_xref="TAIR:AT2G36960.3" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TQP7" /translation="MQTESQVSLASEANCHQEHIPIQIGDPCVASSTPNNAVPEQPAK KPTRQWAAWTRQEEESFFTALRQVGKNFEKITCRVQSKNKDQVRHYYYRLVRRMNKLL GPGLCLDAKNSKDTNAAMLRWWSLLEKYSCRASKLHLKPRRFKIFVEALEHQLLKDRK KNVRKRPSQGENSSPTSPSTVTNQSRASGHDARTVKLVLVDSQNIQKLGPGKGSFKRN TNVGVNRSNSKGESNTMKPARQRRKPGSSSAAYKKWEKAAIAGVSLVADAAEHLERTT TDKEAEHDQDSSVESNIHSAGKLKLQLFPIDDSTRRALEMDKHNPHLELTLSTRKKIS SVLEHLTRKWGNSSVASGELMLFPYGVQRENLMGYQRWTQASIVSAADVYAMIGSPQV FRLRYGWFSDAEVASLTWQAPVSSYIPSEHNVNVEGRNGCIAEEVQVSALSTSDQSKK LDDPCNNQPTLRKENHALQPPLTNFPSEISRFICAGPKDNLGDSPIPVRHASADRSET CNVAILRQLEDVDDQRLNNNTAALSAGEWADSLTNISVGDLLAEVPHDLDDNCVDHPV AESSQCLQQIPFSCDSFDAAIAAHISRHQNKMEVPSLASHPSSIWDAEETCDAFSFSK NHIPCADVPRLSSAVAAACKQITRSNSAGSGTLNKLLPQESPDLEEPMENSACEDLVD ESPSDPHIMDTTEKDFNGLTDIYWVIALGV" gene complement(3156428..3163011) /locus_tag="TCM_022208" /note="dbxref CacaoGD:Thecc1EG022208" mRNA complement(join(3156428..3157156,3157312..3157663, 3158046..3158144,3158272..3158356,3158478..3158527, 3158598..3158674,3158883..3158958,3159277..3159528, 3160199..3160266,3160811..3161096,3161186..3161529, 3161858..3162174,3162586..3162632,3162710..3162883)) /locus_tag="TCM_022208" /product="Phosphoglycerate kinase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025727001" /inference="similar to AA sequence:ricco:30078.m002304" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2124t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2124t3; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1716t5" mRNA complement(join(3156502..3157663,3158046..3158144, 3158272..3158356,3158478..3158527,3158598..3158674, 3158883..3158958,3159229..3159528,3160073..3160266, 3160811..3161096,3161186..3161529,3161858..3162128, 3162309..3162436,3162710..3163011)) /locus_tag="TCM_022208" /product="Phosphoglycerate kinase, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025727001" /inference="similar to AA sequence:ricco:30078.m002304" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2124t3" CDS complement(join(3157430..3157663,3158046..3158144, 3158272..3158356,3158478..3158527,3158598..3158674, 3158883..3158958,3159229..3159528,3160073..3160266, 3160811..3161096,3161186..3161529,3161858..3162128, 3162309..3162335)) /locus_tag="TCM_022208" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30078.m002304" /codon_start=1 /product="Phosphoglycerate kinase, putative isoform 1" /protein_id="EOY07890.1" /db_xref="TAIR:AT3G12780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFP7" /translation="MLKEITFENASLCDGVELEALPHVQTLREFPREELFAKVVMVRF DSTIFLGEKLDWSSQSALRALYTIKFLHESGAKVILVSAWSTKINPKLLAAEVVADIL SSVLRLKVAALRCISCNMPLERKDLQKADILLLENLSNYKEEAANCSKFAELLSSEVD IFVNDSFFQSHKILASTVGVARFCYASMAGFSFDESLCQLKKTATTNKKPYIAIIGGG NLNNKAAALQFLASRCDALVFVGLMSFQIIHALGHSVPTNLVELEAQKAALDIVQFAH NKNVLILYPKDFWCVNQHLPKQLEVLPAQGILDGWVPVDLGPSSLDEINSLVTNSKVK RKLISRYHNMTCYFWLNRDLPSFEIVGTGFILRVYYMSMWKIIWIGPVKFRSSSPYTG GTSKLAQMLYKQCQCECEITIVGSTACEVIKNESSSVSSFNMLENASAVWEFLKGQKL PGVMALDRVYRLLCSVFTSPLCLIAYPFEIDWNVAYCDPSRPLVVDIGSGNGLFIMGM TRKRKDLNFLGLEINGKLVKRCLDSVHQSGITNGYFIETNATSTFHSIVSSYPGELVL LSIECPNPDFNKPEHRWRMMQRSLIEAVADLLASKGKVFLQSDVEAVAMRLKDEFLKY GKGKFHVMHDRYDLVINGNTWLKENPFGIHSDWEQHVIDRGAPMYRLMLSKATGLE" CDS complement(join(3157430..3157663,3158046..3158144, 3158272..3158356,3158478..3158527,3158598..3158674, 3158883..3158958,3159277..3159528,3160199..3160266, 3160811..3161096,3161186..3161529,3161858..3162035)) /locus_tag="TCM_022208" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30078.m002304" /codon_start=1 /product="Phosphoglycerate kinase isoform 2" /protein_id="EOY07891.1" /db_xref="TAIR:AT3G12780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFP7" /translation="MVRFDSTIFLGEKLDWSSQSALRALYTIKFLHESGAKVILVSAW STKINPKLLAAEVVADILSSVLRLKVAALRCISCNMPLERKDLQKADILLLENLSNYK EEAANCSKFAELLSSEVDIFVNDSFFQSHKILASTVGVARFCYASMAGFSFDESLCQL KKTATTNKKPYIAIIGGGNLNNKAAALQFLASRCDALVFVGLMSFQIIHALGHSVPTN LVELEAQKAALDIVQFAHNKNVLILYPKDFWCVNQHLPKQLEVLPAQGILDGWVPVDL GPSSLDEINSLVTNSKKIIWIGPVKFRSSSPYTGGTSKLAQMLYKQCQCECEITIVGS TACEVIKNESSSVSSFNMLENASAVWEFLKGQKLPGVMALDRAYPFEIDWNVAYCDPS RPLVVDIGSGNGLFIMGMTRKRKDLNFLGLEINGKLVKRCLDSVHQSGITNGYFIETN ATSTFHSIVSSYPGELVLLSIECPNPDFNKPEHRWRMMQRSLIEAVADLLASKGKVFL QSDVEAVAMRLKDEFLKYGKGKFHVMHDRYDLVINGNTWLKENPFGIHSDWEQHVIDR GAPMYRLMLSKATGLE" gene 3163646..3165592 /locus_tag="TCM_022209" /note="dbxref CacaoGD:Thecc1EG022209" mRNA join(3163646..3163807,3163894..3163946,3164047..3164147, 3165255..3165592) /locus_tag="TCM_022209" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025728001" /inference="similar to AA sequence:ricco:30078.m002305" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g15627t00001" CDS join(3163735..3163807,3163894..3163946,3164047..3164147, 3165255..3165348) /locus_tag="TCM_022209" /note="dbxref ricco:30078.m002305" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07892.1" /db_xref="TAIR:AT5G03345.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A8MRD2" /translation="MGLGFIIGVFGVLILSHAAYSTIQYRGLLKIMEEEFSGPPMNVV LELLLGFVFCIWAALTVPGKFLSIHPDSEENRIVSLSANLDFMIFNHRAKAFPLEIDM KLKH" gene complement(3165843..3166902) /locus_tag="TCM_022210" /note="dbxref CacaoGD:Thecc1EG022210" mRNA complement(join(3165843..3166088,3166175..3166902)) /locus_tag="TCM_022210" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.66 coverage" CDS complement(join(3166036..3166088,3166175..3166766)) /locus_tag="TCM_022210" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07893.1" /translation="MMIITFISFIIFMVSCVLTEMLIILVIVAHKTCRCSSSIAFSCR KTFDLIKMLFATLIQALAFMHGVASQLEPTLWRHCLSKTLLLRQMICLHSAALFDEST ECYANIATSVCLVLIRIQTTESVAVKGKRTTDGSCLILDCGRKLLYRIIMLELSESWT RYTSNVHARINLSTMVHASAKGRFSCIVVLLAGQFMQGFSLDKTKDEVKVEFQD" gene 3166774..3167583 /locus_tag="TCM_022211" /note="dbxref CacaoGD:Thecc1EG022211" mRNA join(3166774..3167133,3167208..3167583) /locus_tag="TCM_022211" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.78 coverage" CDS join(3167013..3167133,3167208..3167389) /locus_tag="TCM_022211" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07894.1" /translation="MDMAKMNQRTYSFRFTAKSAMKQLKNIFLSIFWWQTQGDRTQEI VELKNGEPKKFFVSLSYLTYPPFMKLLDAAEEEYGFNQKGALVIPCEATELEKILS" gene complement(3167585..3170006) /locus_tag="TCM_022212" /note="dbxref CacaoGD:Thecc1EG022212" mRNA complement(join(3167585..3169659,3169720..3170006)) /locus_tag="TCM_022212" /product="TBP-associated factor 8, putative" /inference="alignment:exonerate-protein:2:frave:gene09624" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018814t2" /inference="similar to AA sequence:frave:gene09624" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Newbler:10:TSA:cgbaB_g13916t00001" CDS complement(3168255..3169376) /locus_tag="TCM_022212" /note="dbxref frave:gene09624; paralog of Thecc1EG018814t2" /codon_start=1 /product="TBP-associated factor 8, putative" /protein_id="EOY07895.1" /db_xref="TAIR:AT4G34340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S0I9" /translation="MSHGGVESTRDTRESEGQRSLPLGRPKADDFGRAVSKISVAQIC ECVGYQGFKESALEALADIAIRYLCDLGKTSSFHANLAGRTECNMFDITQSLEELGAS YGFSGASEIGHCLAGSGAVREIIQFVGSKEEIPFAQPVPQFPVVRNRKLIPSFEHMNE TPPGKHIPAWLPAFPDPHTYIHTPMWNERASDPRADKIEQARQRRKAERALLSLQQRL VCNGSTETSASLVVDAKKETIQEAGNNAFLAAPLQPGEKDVARVVLPAKLSDEVSKDN HVSLLEAFAPAIEAMKGGPSGELDGEKMLLPERRPAVHFKFRTGKKILGESLDLSLQK KGERSTTFFLRDEERDDKKRRAEFILRQTTEYPMELNQS" gene 3170096..3172870 /locus_tag="TCM_022213" /note="dbxref CacaoGD:Thecc1EG022213" mRNA join(3170096..3170391,3171446..3171524,3171651..3171704, 3171790..3172870) /locus_tag="TCM_022213" /product="Aminopeptidase-like protein AC3.5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025730001" /inference="similar to AA sequence:Phytozome:GSVIVT01025730001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13419t1" CDS join(3170240..3170391,3171446..3171524,3171651..3171704, 3171790..3171873) /locus_tag="TCM_022213" /codon_start=1 /product="Aminopeptidase-like protein AC3.5" /protein_id="EOY07896.1" /db_xref="Phytozome:GSVIVT01025730001" /db_xref="TAIR:AT3G09860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PEF9" /translation="MEKYFGNAYRGDPGVPHASPDRFVNIWIGSAAFSALTWFNPYMW QLSNQFNWHDKAMLFEQYHWKKAMAKKQPYKFKWNEYMDKDHRDSYYFNWPLVFLYGF IPSSQSIMLPSLLPLSFRWI" mobile_element complement(3170398..3170485) /note="source:CACAO_M_S_E31635_F14_scaffold_3 3231 3302" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 3172829..3176270 /locus_tag="TCM_022214" /note="dbxref CacaoGD:Thecc1EG022214" mRNA join(3172829..3173410,3173507..3173666,3174433..3174523, 3174669..3174737,3174813..3174922,3175028..3175393, 3176208..3176270) /locus_tag="TCM_022214" /product="Thylakoid lumenal 15.0 kDa protein 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025731001" /inference="similar to AA sequence:ricco:30078.m002295" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc193t14" mRNA join(3173068..3173364,3173563..3173666,3174433..3174523, 3174669..3174737,3174813..3174922,3175028..3175111, 3175273..3175661) /locus_tag="TCM_022214" /product="Thylakoid lumenal 15.0 kDa protein 2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025731001" /inference="similar to AA sequence:ricco:30078.m002295" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2333t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc193t14; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc194t15" CDS join(3173157..3173364,3173563..3173666,3174433..3174523, 3174669..3174737,3174813..3174922,3175028..3175111, 3175273..3175299) /locus_tag="TCM_022214" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30078.m002295" /codon_start=1 /product="Thylakoid lumenal 15.0 kDa protein 2 isoform 2" /protein_id="EOY07898.1" /db_xref="TAIR:AT5G52970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LVV5" /translation="MAFLQYPSPSFRITSIPTYSVPIRASSRLSLPVTPSLNSSTPRN WVPDFRAKSLNWIFSGALALSLSLPGIGFAEAKVGVNKPELLPKEFTSVIDVAGFLSD GQEKRLAEEIGNIEKDTGFKLRVLAQNYPDTPGLAIKDFWQVDDRTIVFVADPTFGNI LNFNVGASVDLDIPRSFWSRLAGKYGNMFYWKEKGEDASIEAAVLAISNCLREPVGPN NCSENHVMLFLD" CDS join(3173157..3173410,3173507..3173666,3174433..3174523, 3174669..3174737,3174813..3174922,3175028..3175120) /locus_tag="TCM_022214" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30078.m002295" /codon_start=1 /product="Thylakoid lumenal 15.0 kDa protein 2 isoform 1" /protein_id="EOY07897.1" /db_xref="TAIR:AT5G52970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LVV5" /translation="MAFLQYPSPSFRITSIPTYSVPIRASSRLSLPVTPSLNSSTPRN WVPDFRAKSLNWIFSGALALSLSLPGKSINLQWMVLDCFQCCFFYYICKIKRFHEPNL VGIGFAEAKVGVNKPELLPKEFTSVIDVAGFLSDGQEKRLAEEIGNIEKDTGFKLRVL AQNYPDTPGLAIKDFWQVDDRTIVFVADPTFGNILNFNVGASVDLDIPRSFWSRLAGK YGNMFYWKEKGEDASIEAAVLAISNCLREPVGPNNCSEVK" gene complement(3176207..3176876) /locus_tag="TCM_022215" /note="dbxref CacaoGD:Thecc1EG022215" mRNA complement(3176207..3176876) /locus_tag="TCM_022215" /product="SAUR family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s09360.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022219t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s09360.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13411t1" CDS complement(3176409..3176807) /locus_tag="TCM_022215" /note="paralog of Thecc1EG022219t1" /codon_start=1 /product="SAUR family protein, putative" /protein_id="EOY07899.1" /db_xref="Phytozome:POPTR_0016s09360.1" /db_xref="TAIR:AT3G09870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTE7" /translation="MCVKMQNWEQRHTGLVVLRLSMKKLKRVFSEFPSRGLDQNAVEF DENVEETKKIPKDVKEGHFAVIAVKGGKPKRFILELSYLRNPAFLRLLEQAKEEYGFH QTGALTVPCQPEELEKILEDRIKKIASAWV" gene complement(3178925..3179777) /locus_tag="TCM_022216" /note="dbxref CacaoGD:Thecc1EG022216" mRNA complement(3178925..3179777) /locus_tag="TCM_022216" /product="SAUR-like auxin-responsive protein family, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s12690.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022217t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s12690.1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(3179342..3179758) /locus_tag="TCM_022216" /note="paralog of Thecc1EG022217t1" /codon_start=1 /product="SAUR-like auxin-responsive protein family, putative" /protein_id="EOY07900.1" /db_xref="Phytozome:POPTR_0006s12690.1" /translation="MAESKRGLMMFRPFFQKLRKGYWVSAFRESPALNHAGFDEDMSV AKTVPDDVKEGFFTVFAVKGKETQRFVIELDQLTNPALLSLLDQAWEEYGFQQKGALS LPCRPHELQAILEHSNKSNAGTESRATCNATILESY" mobile_element 3180653..3180940 /note="source:CACAO_M_E71755_F283_scaffold_10 1 312" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(3182795..3184897) /locus_tag="TCM_022217" /note="dbxref CacaoGD:Thecc1EG022217" mRNA complement(join(3182795..3183358,3184744..3184897)) /locus_tag="TCM_022217" /product="SAUR-like auxin-responsive protein family, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g34020.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022216t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s12690.1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(3182878..3183358,3184744..3184835)) /locus_tag="TCM_022217" /note="paralog of Thecc1EG022216t1" /codon_start=1 /product="SAUR-like auxin-responsive protein family, putative" /protein_id="EOY07901.1" /db_xref="Phytozome:POPTR_0006s12690.1" /db_xref="TAIR:AT3G09870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTE7" /translation="MRSGCTLLGECNLVGSGSPRLDLATGTPKVGLGKRSIHSKETLK IHLEISIKNITESKRNLVMFTPFFRKLRKGFWVLESKGTALNYAEFDEEVDVATTVPD DVKEGYFTVFAVKGKETQRFVIELDKLTNPAFLSLLEQAREEYGFQQKGVLSLPCRPQ ELLEILEHGKVNEAGAEGWTKTDASLLERY" mobile_element 3184511..3184854 /note="source:scaffold_9_CACTA_0936 458 766" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3189400..3191012 /note="source:INTACT554_F250_scaffold_7-int 1 1596" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3191069..3191119) /note="source:CACAO_Mutator_E1149_scaffold_5 4716 4766" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(3191087..3191154) /note="source:CACAO_M_S_E90022_F9_scaffold_8 3103 3170" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3192735..3193076 /note="source:INTACT554_F250_scaffold_7-int 2582 2956" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3194467..3194567) /note="source:CACAO_Mutator_E1376_scaffold_6 8494 8592" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(3196367..3197786) /note="source:CACAO_Mutator_E1376_scaffold_6 2181 3641" /mobile_element_type="transposon:TIR/Mutator" mobile_element 3199365..3199841 /note="source:CACAO_MITE_S250_scaffold_10 2 504" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(3199501..3200194) /note="source:CACAO_Again_on_E210_scaffold_9 612 1404" /mobile_element_type="transposon:TIR/hAT" mobile_element 3199811..3200542 /note="source:CACAO_MITE_S250_scaffold_10 144 853" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(3200266..3200579) /note="source:scaffold_9_CACTA_0943 1724 1989" /mobile_element_type="transposon:TIR/CACTA" gene complement(3201294..3202338) /locus_tag="TCM_022219" /note="dbxref CacaoGD:Thecc1EG022219" mRNA complement(join(3201294..3201812,3202157..3202338)) /locus_tag="TCM_022219" /product="SAUR-like auxin-responsive protein family, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g20630.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022215t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s09360.1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(3201444..3201812,3202157..3202306)) /locus_tag="TCM_022219" /note="paralog of Thecc1EG022215t1" /codon_start=1 /product="SAUR-like auxin-responsive protein family, putative" /protein_id="EOY07902.1" /db_xref="Phytozome:POPTR_0016s09360.1" /translation="MARQNERPRGNGRGKGQDVGPAHWVGWHFDATTIHVPHGDRHNS LLGWKTKCEKRHVGLVMLRLLTEKLLRVISIFPSRGTDHSIVEFVEDVEETKMVPKDV KEGHFAVIAVKGGKQKRFILELSCLRNPAFLTLLEQAKEEYGFRQKGVLVLPCEPEEL QKILEDSTKIYR" mobile_element 3204130..3204841 /note="source:CACAO_Mariner_E176_scaffold_6 1536 2275" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene complement(3206215..3207575) /locus_tag="TCM_022220" /note="dbxref CacaoGD:Thecc1EG022220" mRNA complement(join(3206215..3206861,3207145..3207575)) /locus_tag="TCM_022220" /product="SAUR-like auxin-responsive protein family, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g06370.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022222t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s09360.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.25 coverage" CDS complement(join(3206716..3206861,3207145..3207493)) /locus_tag="TCM_022220" /note="paralog of Thecc1EG022222t1" /codon_start=1 /product="SAUR-like auxin-responsive protein family, putative" /protein_id="EOY07903.1" /db_xref="Phytozome:POPTR_0016s09360.1" /translation="MFRPFLQKIRKGFHVSLSRGQAVINDVEVDEEINVATPMSDDVG AGYFTVFAVQGKETQRFVIELDNLTNPAFLSLLEQAGEEYGFHQKGVLSLPCRPQELQ KILQDWEAEHADTEAGAGCFMCEVLKCFLILMDSVCFVNLVLCSELSGAAPVSSRGSV EARS" mobile_element complement(3211130..3211319) /note="source:CACAO_M_E52630_F119_scaffold_7 60 248" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(3215456..3215925) /locus_tag="TCM_022221" /note="dbxref CacaoGD:Thecc1EG022221" mRNA complement(3215456..3215925) /locus_tag="TCM_022221" /product="SAUR-like auxin-responsive protein family, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022217t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.15 coverage" CDS complement(3215544..3215894) /locus_tag="TCM_022221" /note="paralog of Thecc1EG022217t1" /codon_start=1 /product="SAUR-like auxin-responsive protein family, putative" /protein_id="EOY07904.1" /translation="MFKPFFQKIQKGFPVSASRGLALSDDAITVPDDVEEGYFTVFTV QEIETQRFVIKLDNPINPACLSLLEQARDEHGFQQKGALSVPCRPQELRQILEDRYYQ EKDATECWAAYDVK" mobile_element 3217110..3218208 /note="source:INTACT164_F159_scaffold_7-int 10085 11345" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(3219886..>3221275) /locus_tag="TCM_022222" /note="dbxref CacaoGD:Thecc1EG022222" mRNA complement(3219886..>3221275) /locus_tag="TCM_022222" /product="SAUR-like auxin-responsive protein family, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022220t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s09360.1" /note="quality class is strong-utrpoor, express is strong, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.79 coverage" CDS complement(3220806..>3221273) /locus_tag="TCM_022222" /note="paralog of Thecc1EG022220t1" /codon_start=1 /product="SAUR-like auxin-responsive protein family, putative" /protein_id="EOY07905.1" /db_xref="Phytozome:POPTR_0016s09360.1" /translation="NFKETLLNSQRGILSRALKKTKRGLEMFGPFLQKIRKGFHVSPS RGQAVINDVEVDEELNVATPMSDDVGTGYFTVFAVQGNETQRFVIELDNLTNPAVLSL LEQAGEEYGFHQKGVLSLPCRPQELQKILQDWEAEHADTEGWATCNATTTEGY" gene complement(3223186..3227111) /locus_tag="TCM_022223" /note="dbxref CacaoGD:Thecc1EG022223" mRNA complement(join(3223186..3224157,3224520..3225080, 3225176..3226331,3226510..3227111)) /locus_tag="TCM_022223" /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026101t1" /inference="similar to AA sequence:frave:gene30122" /note="quality class is strong-expresste, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.75 coverage" CDS complement(join(3224127..3224157,3224520..3225080, 3225176..3226331,3226510..3226957)) /locus_tag="TCM_022223" /note="dbxref frave:gene30122; paralog of Thecc1EG026101t1" /codon_start=1 /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /protein_id="EOY07906.1" /db_xref="TAIR:AT4G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BMR0" /translation="MSQESLSGNKYFIVFIDDYSRMTWIYFLKFKSEVFETFVRFKAK VETESGLKLKSLRSNNGGEFTSSEFENYLEAEGIHHQLIVLYSPQQNEVSERKNRSIL DMARCLLFEKKLPKKFWAEAYNTVVYLLNRLPTRALTGKTSYEAWHGRMLHLKKTNWD WSANEPESSTSPFSIQINRPIETEPDIPEQNVDDDENYAVRGTRSLDDIYHTCLVAAT EPDTYQEAAESEEWRVAMQEEIDTMNKTKTWSLVDKPAKHHVIGVKWIFRKKFNSDGT LNKYKARLVAKGYSQLPGVDFLQTFALVARFETIRLLFALSAAFGWKVYHLDVKSAFL NGILQEEIYVEQPEGFKIESQSNKVYKLHKALYGLKQAPRTWNSKIDSYLVNLGFKKS PNEATMYILKHNGTAQVIISLYVDDLLVTECNDKEIRKFKSDMKKNFNMSDLGMMKYF LGIQICQTNKGIFISQENYIQEILNKFHLSNCNPVSTPLVVNQKFSINDGCKLRNASA FRSLVGSLLYICSTHPELMFSVSLLSRLQDIKLVGYSDSDWGGSVDDSKSTSGFGNGA FSWNSHKQCVVAQSSAEAEYIAANAATNQAIWLRKVLNDLTFVQETSTSIFVENKSSI AITKNPVFHGKTKHIKVKFHAIREAERNGEIVLQHCSSENQIADIMTKTLPKLRFETI RTMMSVKDASFKEECWELSMHQLATWTCICPFCFVVLVISTSLLIFQLS" mobile_element 3224294..3224596 /note="source:INTACT239_F181_scaffold_4-int 7231 7533" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 3226164..3228946 /note="source:INTACT239_F181_scaffold_4-int 4746 7531" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(3227468..3229347) /locus_tag="TCM_022224" /note="dbxref CacaoGD:Thecc1EG022224" mRNA complement(join(3227468..3228662,3228799..3229347)) /locus_tag="TCM_022224" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031803t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s13110.1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.86 coverage" CDS complement(3228155..3228469) /locus_tag="TCM_022224" /note="paralog of Thecc1EG031803t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07907.1" /db_xref="Phytozome:POPTR_0011s13110.1" /translation="MKAFLRGCNLWNVVETDPELAPLRENATPAQVNKYEENIAKRYR ALSFIHSTVSESVFSRIIGSETAKQAWDKLEDEFLGFARSKQIRLQHLRREFEFLRMK EN" mobile_element complement(3234351..3240525) /note="source:INTACT85_F9_scaffold_4-int 4685 10769" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3235060..3242240 /note="source:INTACT631_F9_scaffold_10-int 4910 12118" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(3244426..3245170) /locus_tag="TCM_022227" /note="dbxref CacaoGD:Thecc1EG022227" mRNA complement(3244426..3245170) /locus_tag="TCM_022227" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.57 coverage" CDS complement(3244711..3245154) /locus_tag="TCM_022227" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07908.1" /translation="MASVDYTISPIVATASRHAKPNSVLALPMLTNLNSKLMPLGNSL FSLSLSKSISNYMREVKTLSDEIAVSGAPMNNDELVIKVLSGLDPEYTELTIAIWARD SLIGLEELYDKLLAQEVFLKHEGTKQESMVIIAQLNQCSNTSYGN" mobile_element 3247435..3250888 /note="source:CACAO_M_E34392_F323_scaffold_5 1 3454" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3257374..3260323) /note="source:CACAO_M_E49556_F134_scaffold_7 1 2954" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3261780..3263299) /note="source:CACAO_M_E33018_F264_scaffold_4 4201 5728" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3263671..3268380 /note="source:INTACT741_F17_scaffold_3-int 4977 9661" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(3270094..3270558) /locus_tag="TCM_022229" /note="dbxref CacaoGD:Thecc1EG022229" mRNA complement(3270094..3270558) /locus_tag="TCM_022229" /product="SAUR-like auxin-responsive protein family" /inference="alignment:exonerate- protein:2:ricco:30078.m002293" /inference="similar to AA sequence:ricco:30078.m002293" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2145t1" CDS complement(3270250..3270549) /locus_tag="TCM_022229" /note="dbxref ricco:30078.m002293" /codon_start=1 /product="SAUR-like auxin-responsive protein family" /protein_id="EOY07909.1" /translation="MGKAKNFGVLKKGSIGMIRFIAGKLQSSLPLSKTIREGHFVVIA TEGPEPKRFVIKLDHLNNPEFLKLLKQAEEEFGFYREGAIELPCRPDELQRILGI" gene complement(3272346..3275565) /locus_tag="TCM_022230" /note="dbxref CacaoGD:Thecc1EG022230" mRNA complement(join(3272346..3272371,3273758..3274035, 3275109..>3275348)) /locus_tag="TCM_022230" /product="Acylphosphatase family isoform 2" /inference="alignment:exonerate-protein:2:frave:gene09593" /inference="similar to AA sequence:frave:gene09593" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1028t1; inference alignment:Newbler:10:TSA:cgbaP2_g03962t00001" mRNA complement(join(3273624..3274035,3275109..3275565)) /locus_tag="TCM_022230" /product="Acylphosphatase family isoform 1" /inference="alignment:exonerate-protein:2:frave:gene09593" /inference="similar to AA sequence:frave:gene09593" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g03962t00001; inference alignment:Newbler:10:TSA:cgbaP2_g03962t00001" CDS complement(join(3273769..3274035,3275109..3275450)) /locus_tag="TCM_022230" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene09593" /codon_start=1 /product="Acylphosphatase family isoform 1" /protein_id="EOY07910.1" /db_xref="TAIR:AT5G03370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZF2" /translation="MASTQQLKPSLILINHQTSTRFLIFLNNKNLHCLPPRRWFQNAN TCFAHRFPFRSYTNSPSFHPSLPLCSRFPPFRPPIPSLFPLSFYHFRSLLTSMATPQA ANDSSQPSQTKTVRVVIKGRVQGVFYRNWTIENATQLGLKGWVRNRRDGSVEVLLSGS LDSVQEMEQRCRRGPPAAMVTGLRVFPSNDDPGTGFERKPTV" CDS complement(join(3273769..3274035,3275109..>3275348)) /locus_tag="TCM_022230" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene09593" /codon_start=1 /product="Acylphosphatase family isoform 2" /protein_id="EOY07911.1" /db_xref="TAIR:AT5G03370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZF2" /translation="PPRRWFQNANTCFAHRFPFRSYTNSPSFHPSLPLCSRFPPFRPP IPSLFPLSFYHFRSLLTSMATPQAANDSSQPSQTKTVRVVIKGRVQGVFYRNWTIENA TQLGLKGWVRNRRDGSVEVLLSGSLDSVQEMEQRCRRGPPAAMVTGLRVFPSNDDPGT GFERKPTV" mobile_element complement(3276223..3277159) /note="source:INTACT897F_F376_scaffold_6-int 612 1535" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3277530..3282783) /note="source:INTACT897F_F376_scaffold_6-int 1605 6923" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3282812..3283743) /note="source:INTACT897F_F376_scaffold_6-int 612 1535" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3284102..3284222) /note="source:INTACT897F_F376_scaffold_6-int 1 126" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(3286298..3288915) /locus_tag="TCM_022233" /note="dbxref CacaoGD:Thecc1EG022233" mRNA complement(join(3286298..3287241,3287326..3287441, 3287595..3288915)) /locus_tag="TCM_022233" /product="Nitrate transporter 2.4" /inference="alignment:exonerate- protein:2:ricco:30078.m002302" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042127t1" /inference="similar to AA sequence:ricco:30078.m002302" /note="quality class is strong, express is none, homology is ortholog strong, intron is none, protein is complete" CDS complement(join(3286575..3287241,3287326..3287441, 3287595..3288380)) /locus_tag="TCM_022233" /note="dbxref ricco:30078.m002302; paralog of Thecc1EG042127t1" /codon_start=1 /product="Nitrate transporter 2.4" /protein_id="EOY07912.1" /db_xref="TAIR:AT5G60770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6ZH34" /translation="MTETENEPGRSMHGVSAKEQAFAFSVTSPTIPTDPTAKFALPVD SEHKAKVFNLLSFAKPHMVTFHLSWLSFFTCFISTFAAAPLVPIIRDNLNLTKSDISN AGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFCMSFVSSAGGYVAVRFM IGFSLATFVFCQYWMSTMFNGKIIGLVNGTAAGWGNMGGGATQLLMPLIFELIKQAGA TPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGTLQKKGDVIWYAITNYRTWIF VLLYGMSLGVELTTDNVIAEYFFDRFNLKLHTAGTIAATFGMANIFARPMGGFLSDIA ARRFGMRGRLWNLYILQTLGGIFCICLGRANYLSLSIFSMILFSIGAQAACGATFGII PFISCRSLGVISGLTGAGGNFGSGLTQLLFFTSSKYSTATGIFHMGIMIVACTLPVTL VHFPQWGSMFFPASKHGEKCSEEHYYGSEWNEEEKEKGLHHGSLKFAENSRSERGRRI SSAPKPPTSTPRDV" gene 3289768..3290635 /locus_tag="TCM_022234" /note="dbxref CacaoGD:Thecc1EG022234" mRNA join(3289768..3290189,3290282..3290635) /locus_tag="TCM_022234" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.22 coverage" CDS join(3290060..3290189,3290282..3290424) /locus_tag="TCM_022234" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07913.1" /translation="MLCNRDFKFHYTSLKSTLPIPSLLLSNSNFSLQSYAKDMANRPG TKSDISWTQIISTLALLQSCLTWQIDKAQHQTTKELGLSYLGAEGI" gene complement(3301735..3303871) /locus_tag="TCM_022235" /note="dbxref CacaoGD:Thecc1EG022235" mRNA complement(join(3301735..3302436,3302605..3302683, 3302889..3303133,3303414..3303567,3303684..3303871)) /locus_tag="TCM_022235" /product="Heavy metal transport/detoxification superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s09630.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s09630.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13460t3" CDS complement(join(3301892..3302436,3302605..3302683, 3302889..3303133,3303414..3303567,3303684..3303692)) /locus_tag="TCM_022235" /codon_start=1 /product="Heavy metal transport/detoxification superfamily protein, putative" /protein_id="EOY07914.1" /db_xref="Phytozome:POPTR_0016s09630.1" /db_xref="TAIR:AT2G36950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFR1" /translation="MGEQEEGAKPEAEKKPAADAGAKKDDGTVTAVYKIDMHCEGCAK KIKRAIKHYEGVEDVKADSGANKLTVTGKVDPAKVRDRLAEKTKKKVDLISPQPKKDA APAAGGGGDKKPDAEKKPEGKKEEKKEEKKPPKESTVVLKIRTHCDGCIHKIRKIIKK VAGVQSVDVDGAKDLVTVKGTMDVKDLVPYLKEKLKRSVDMVPPKKDDGGEKKDAGGE NKDKGKGAAAGGEKKEGGGEKKEGGEKKEGGGGGEAKMEVSKMEYHGYPYPAQPMYWS DGHMYGPSYAVEGYQNHPHEYGYVNHGYANQGYMHPGYANQGYMMDPRHHYAPQMFSD ENPNACSIM" mobile_element 3305423..3306403 /note="source:INTACT639F_F363_scaffold_5-int 7588 8592" /mobile_element_type="retrotransposon:LTR/Copia" gene 3308485..3314892 /locus_tag="TCM_022236" /note="dbxref CacaoGD:Thecc1EG022236" mRNA join(3308485..3308911,3308992..3309087,3309497..3309585, 3309786..3309915,3310347..3310439,3310651..3310725, 3310950..3311067,3311823..3311965,3312560..3312688, 3314139..3314302,3314415..3314892) /locus_tag="TCM_022236" /product="Histidyl-tRNA synthetase 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s12640.1" /inference="similar to AA sequence:ricco:30078.m002290" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01114t00001" mRNA join(3308485..3308911,3308992..3309087,3309497..3309585, 3309786..3309915,3310347..3310439,3310651..3310725, 3310950..3311067,3311823..3311951,3312560..3312688, 3314139..3314302,3314415..3314892) /locus_tag="TCM_022236" /product="Histidyl-tRNA synthetase 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s12640.1" /inference="similar to AA sequence:ricco:30078.m002290" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:PASA:2:TSA:puevd3b021526t1a3; inference alignment:Newbler:10:TSA:cgbaB_g01794t00001" CDS join(3308567..3308911,3308992..3309087,3309497..3309585, 3309786..3309915,3310347..3310439,3310651..3310725, 3310950..3311067,3311823..3311965,3312560..3312688, 3314139..3314302,3314415..3314553) /locus_tag="TCM_022236" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30078.m002290" /codon_start=1 /product="Histidyl-tRNA synthetase 1 isoform 1" /protein_id="EOY07915.1" /db_xref="TAIR:AT3G46100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O82413" /translation="MPPFPSSLLNPRLSFSLKPLFLFIQSSIAPLQFPVPRQLISAKP RNFSSLASVQSSAIDNGGSSSGGGGGRSGALSPPPVAEEFQRIDVNPPKGTRDFPPED MRLRNWLFNHFREVSRLFGFEEVDYPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVA LRPELTPSLARLVIQKGKSLSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDILGVPE VTAEAELISSIVTFFKRIGISESDVGFKVSSRKVLQEVLRCYSVPENLFGKVCIVIDK IEKIPIDEIKRELKATGLSEEAIEELLQVLSIKSLTKLEEILGGSGEAIADLKQLFLL AEKFGYSEWIQFDASVVRGLAYYTGIVFEGFDREGKLRAICGGGRYDRLLSTFGGDDI PACGFGFGDAVIVELLKEKGLLPELSLEVDNIVCALDYDLQGVAATVATKLRGKGQSV DLVLESKPLKWVFKRAARANAERLILVGNTEWQKGMVGVKILSSGEQYEIKLDELE" CDS join(3308567..3308911,3308992..3309087,3309497..3309585, 3309786..3309915,3310347..3310439,3310651..3310725, 3310950..3311067,3311823..3311951,3312560..3312567) /locus_tag="TCM_022236" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30078.m002290" /codon_start=1 /product="Histidyl-tRNA synthetase 1 isoform 2" /protein_id="EOY07916.1" /db_xref="TAIR:AT3G46100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O82413" /translation="MPPFPSSLLNPRLSFSLKPLFLFIQSSIAPLQFPVPRQLISAKP RNFSSLASVQSSAIDNGGSSSGGGGGRSGALSPPPVAEEFQRIDVNPPKGTRDFPPED MRLRNWLFNHFREVSRLFGFEEVDYPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVA LRPELTPSLARLVIQKGKSLSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDILGVPE VTAEAELISSIVTFFKRIGISESDVGFKVSSRKVLQEVLRCYSVPENLFGKVCIVIDK IEKIPIDEIKRELKATGLSEEAIEELLQVLSIKSLTKLEEILGGSGEAIADLKQLFLL AEKFGYSEWIQFDASVVRGLAYYTGF" mobile_element complement(3312771..3312974) /note="source:MITE_Unknown_5 887 1088" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(3312794..3313909) /note="source:CACAO_Again_on_E108_scaffold_4 1 1122" /mobile_element_type="transposon:TIR/hAT" gene complement(3314894..3319181) /locus_tag="TCM_022238" /note="dbxref CacaoGD:Thecc1EG022238" mRNA complement(join(3314894..3315132,3315250..3315447, 3315536..3315572,3315664..3315718,3315819..3315901, 3316061..3316201,3316289..3316413,3316677..3316795, 3316884..3316982,3317707..3318128,3318963..3319181)) /locus_tag="TCM_022238" /product="Nucleotide-diphospho-sugar transferases superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400004895" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022423t1" /inference="similar to AA sequence:Phytozome:GSVIVT01025737001" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS complement(join(3314985..3315132,3315250..3315447, 3315536..3315572,3315664..3315718,3315819..3315901, 3316061..3316201,3316289..3316413,3316677..3316795, 3316884..3316982,3317707..3318069)) /locus_tag="TCM_022238" /note="paralog of Thecc1EG022423t1" /codon_start=1 /product="Nucleotide-diphospho-sugar transferases superfamily protein, putative" /protein_id="EOY07917.1" /db_xref="Phytozome:GSVIVT01025737001" /db_xref="TAIR:AT5G03760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZR3" /translation="MLKTLFPFKTKRTKKRENEKFSVSRAGGKSNKRDKQPNHAWKSI LRVSFFVPLLRLAILLCSLMSIRLFIERVYMAIVILCVKVLRKKRYTRYSLEAMKDVE LNKSHPLLLVQIPMYNEKEVYKLSIGSACGLSWPSPRLIVQVLAVSTNEVLRELIEFE CRKWIEKGVNVKYETRNNRNGYKAGALKEGLEKHLFSVVNADGGLVTHLREMSLDYHF SVEQEVGSSTCSFFGFNGTAGVWRIPAIKDAGGWKDRTTVEDMDLAVRASLKGWKFLF VGDLAATYRYQRHRWSCGPANLFRKMTKEIIFCEEIPCHLCILLHEDDNCTLATISIL NAVCTPRSIHLLIFWILFENVMSLHRTKAAIIGLLEANRVNEWVVTEKLGNTGKQKNS TKMLKKSRFRVGEERIHVLELVLGIFMLYRAIYGRDHFFLYLSLQAVAFFVMGLGYVG TFASN" mobile_element 3318608..3319322 /note="source:INTACT1608F_F65_scaffold_10-int 2988 3759" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3322369..3322868 /note="source:INTACT52F_F339_scaffold_1-int 1772 2272" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 3323605..3327937 /locus_tag="TCM_022239" /note="dbxref CacaoGD:Thecc1EG022239" mRNA join(3323605..3324107,3325777..3325840,3326958..3327084, 3327858..3327937) /locus_tag="TCM_022239" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(3323875..3324107,3325777..3325840,3326958..3327084, 3327858..3327904) /locus_tag="TCM_022239" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07918.1" /translation="MSTKMHFKVGRPPFFYLGMPLGANLRKTSMWKLIVKRFRDRLVG WKGRMLSMGGRVILINSTLLSLPLYYMSLFKASKRNSISFINSTFLFIVFVDLVRVSE EGTVVNEAKWWANSRVELRTPCEKMIKERKEVQWQLPSEDKPNIGRKFLDPISE" mobile_element complement(3328987..3329261) /note="source:INTACT1818F_F49_scaffold_11-int 20014 20275" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3329859..3329964) /note="source:scaffold_7_CACTA_0785 12038 12124" /mobile_element_type="transposon:TIR/CACTA" gene 3333327..3338208 /locus_tag="TCM_022240" /note="dbxref CacaoGD:Thecc1EG022240" mRNA join(3333327..3333831,3334048..3334091,3334808..3334870, 3334983..3335129,3335242..3335310,3335499..3335597, 3337123..3337193,3337492..3338208) /locus_tag="TCM_022240" /product="Transcription factor DP" /inference="alignment:exonerate- protein:2:Phytozome:Glyma12g02050.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021956t2" /inference="similar to AA sequence:Phytozome:GSVIVT01025739001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc209t3" CDS join(3333702..3333831,3334048..3334091,3334808..3334870, 3334983..3335129,3335242..3335310,3335499..3335597, 3337123..3337193,3337492..3337726) /locus_tag="TCM_022240" /note="paralog of Thecc1EG021956t2" /codon_start=1 /product="Transcription factor DP" /protein_id="EOY07919.1" /db_xref="Phytozome:GSVIVT01025739001" /db_xref="TAIR:AT5G03415.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q84VA0" /translation="MLEFSMNLTDCNFYFCSSKKKKRGQRAVGGDKSGRGLRQFSMKV CEKVESKGRTTYNEVADELVAEFADPSSSVASPDQQQYDEKNIRRRVYDALNVLMAMD IISKDKKEIQWKGLPRTSLNDIEELKTERLGRRNRIEKKAAYLQELEEQFVGLQNLIQ RNEQLYSSGNAPSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNY VLKAMKFCDRPQSDEMAHNFSADGEGSSMSAMYQQQIPPPPRTNTPGRPPTSPPLPGI LKARVKHEH" gene 3340713..3343737 /locus_tag="TCM_022242" /note="dbxref CacaoGD:Thecc1EG022242" mRNA join(3340713..3340792,3340952..3341028,3341168..3341230, 3341815..3341913,3343282..3343737) /locus_tag="TCM_022242" /product="Zinc finger family protein" /inference="alignment:exonerate- protein:2:ricco:30078.m002287" /inference="similar to AA sequence:Phytozome:GSVIVT01033644001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1155t18_C2" CDS join(3340715..3340792,3340952..3341028,3341168..3341230, 3341815..3341913,3343282..3343330) /locus_tag="TCM_022242" /codon_start=1 /product="Zinc finger family protein" /protein_id="EOY07920.1" /db_xref="Phytozome:GSVIVT01033644001" /db_xref="TAIR:AT2G36930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TIR1" /translation="MGGKCPNRKVKKRRYSHKTARRDKFLGDSEKKPLPRDEDLPGMG QYYCLHCDRYFANVTVRDEHYKTKRHKKRLKQMSGPAPHTQLDAELAAGMGMPDNGPT LMSINRSCLHTIMLLVDGA" gene complement(3343947..3351681) /locus_tag="TCM_022244" /note="dbxref CacaoGD:Thecc1EG022244" mRNA complement(join(3343947..3344346,3344601..3346331, 3346658..3347372,3347497..3347870,3349035..3349258, 3349448..3349764,3349851..3350110,3350231..3350431, 3350517..3350692,3350803..3350857,3350951..3351681)) /locus_tag="TCM_022244" /product="ATP binding cassette subfamily B1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s09680.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018479t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s12590.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc605t4" mRNA complement(join(3344638..3346331,3346658..3347372, 3347497..3347870,3349035..3349258,3349448..3349764, 3349851..3350110,3350231..3350431,3350517..3350857, 3350951..3351681)) /locus_tag="TCM_022244" /product="ATP binding cassette subfamily B1 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s09680.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018479t1" /inference="similar to AA sequence:ricco:30078.m002286" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc605t3; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc605t4" mRNA complement(join(3344638..3346331,3346658..3347372, 3347497..3347870,3349035..3349258,3349448..3349764, 3349851..3350110,3350231..3350431,3350517..3350669, 3350804..3350857,3350951..3351506)) /locus_tag="TCM_022244" /product="ATP binding cassette subfamily B1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s09680.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018479t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s12590.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc608t4; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc605t4" CDS complement(join(3345045..3346331,3346658..3347372, 3347497..3347870,3349035..3349258,3349448..3349764, 3349851..3350110,3350231..3350431,3350517..3350669, 3350804..3350857,3350951..3351463)) /locus_tag="TCM_022244" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG018479t1" /codon_start=1 /product="ATP binding cassette subfamily B1 isoform 2" /protein_id="EOY07922.1" /db_xref="Phytozome:POPTR_0006s12590.1" /db_xref="TAIR:AT2G36910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZR72" /translation="MSQDSEEIKTIEQWKWSEMQGLELVSAPPSDPFKTNPSTPTPTT TTNNTHLREQQEKPQQQSQAEAQAYQESVGERREMETSSSSSETKKDGSNNGSGGSGE KPGDLPSVGFGELFRFADGLDYVLMGIGSLGAFVHGCSLPLFLRFFADLVNSFGSNAN NMDKMMQEVLKYAFYFLVVGAAIWASSWAGERQTTKMRIKYLEAALNQDIQYFDTEVR TSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPLI AVIGAIHTTTLAKLSAKSQAALSHGGNIVEQTVVQIRVVMAFVGESRTLQAYSSALKV AQKIGYKSGFAKGMGLGATYFVVFCCYALLLWYGGYLVRHHYTNGGLAIATMFAVMIG GLGLGQSAPSMSAFAKAKVAAAKIFRIIDHKPGIDRNSESGLELESVNGLVELKNVDF AYPSRPDVKILNNFSLSVPAGKTIALVGSSGSGKSTVVSLIERFYDPISGEVLLDGHD IKTLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDANQIEIEEAARVANAHSFIVK LPEGFDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEAL DRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELISKGENGVYAKLIRMQ EMAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLE ASHPNYRMEKLAFKEQASSFWRLAKMNSPEWVYALVGSIGSVVCGSLSAFFAYVLSAV LSVYYNPDHAYMSREIGKYCYLLIGLSSAALLFNTLQHFFWDIVGENLTKRVREKMLA AVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFV LQWRLALVLVAVFPVVVAATVLQKMFMKGFSGDLEAAHAKATQLAGEAIANVRTVAAF NSENKIVGLFSSNLQTPLRRCFWKGQIAGSGFGVAQFSLYASYALGLWYASWLVKHGI SDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEVEPDDPDAT QVPDRLRGEVELKHVDFSYPSRPDVPIFRDLNLRARAGKTLALVGPSGCGKSSVIALI QRFYEPSSGRVMVDGKDIRKYNLKSLRKHIAIVPQEPCLFGSTIYENIAYGHESATEA EIIEAATLSNAHKFISSLPDGYKTFVGERGVQLSGGQKQRIAIARALVRKAELMLLDE ATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIEDGKVAEQGSHSH LLKNYPDGCYARMIQLQRFTHSQVVGMTSGSSSSARPKDDNEREA" CDS complement(join(3345045..3346331,3346658..3347372, 3347497..3347870,3349035..3349258,3349448..3349764, 3349851..3350110,3350231..3350431,3350517..3350692, 3350803..3350857,3350951..3351463)) /locus_tag="TCM_022244" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG018479t1" /codon_start=1 /product="ATP binding cassette subfamily B1 isoform 1" /protein_id="EOY07921.1" /db_xref="Phytozome:POPTR_0006s12590.1" /db_xref="TAIR:AT2G36910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZR72" /translation="MSQDSEEIKTIEQWKWSEMQGLELVSAPPSDPFKTNPSTPTPTT TTNNTHLREQQEKPQQQSQAEAQAYQESVGERREMETSSSSSETKKDGSNNGSGGSGE KPGDLPSVGFGELFRFADGLDYVLMGIGSLGAFVHGCSLPLFLRFFADLVNSFGSNAN NMDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQTTKMRIKYLEAALNQDI QYFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALV TLAVVPLIAVIGAIHTTTLAKLSAKSQAALSHGGNIVEQTVVQIRVVMAFVGESRTLQ AYSSALKVAQKIGYKSGFAKGMGLGATYFVVFCCYALLLWYGGYLVRHHYTNGGLAIA TMFAVMIGGLGLGQSAPSMSAFAKAKVAAAKIFRIIDHKPGIDRNSESGLELESVNGL VELKNVDFAYPSRPDVKILNNFSLSVPAGKTIALVGSSGSGKSTVVSLIERFYDPISG EVLLDGHDIKTLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDANQIEIEEAARVA NAHSFIVKLPEGFDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSES EKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVLQQGSVSEIGTHDELISKGENGV YAKLIRMQEMAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFST SDFSLSLEASHPNYRMEKLAFKEQASSFWRLAKMNSPEWVYALVGSIGSVVCGSLSAF FAYVLSAVLSVYYNPDHAYMSREIGKYCYLLIGLSSAALLFNTLQHFFWDIVGENLTK RVREKMLAAVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALML VACTAGFVLQWRLALVLVAVFPVVVAATVLQKMFMKGFSGDLEAAHAKATQLAGEAIA NVRTVAAFNSENKIVGLFSSNLQTPLRRCFWKGQIAGSGFGVAQFSLYASYALGLWYA SWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEV EPDDPDATQVPDRLRGEVELKHVDFSYPSRPDVPIFRDLNLRARAGKTLALVGPSGCG KSSVIALIQRFYEPSSGRVMVDGKDIRKYNLKSLRKHIAIVPQEPCLFGSTIYENIAY GHESATEAEIIEAATLSNAHKFISSLPDGYKTFVGERGVQLSGGQKQRIAIARALVRK AELMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIEDGKV AEQGSHSHLLKNYPDGCYARMIQLQRFTHSQVVGMTSGSSSSARPKDDNEREA" CDS complement(join(3345045..3346331,3346658..3347372, 3347497..3347870,3349035..3349258,3349448..3349764, 3349851..3350110,3350231..3350431,3350517..3350678)) /locus_tag="TCM_022244" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30078.m002286; paralog of Thecc1EG018479t1" /codon_start=1 /product="ATP binding cassette subfamily B1 isoform 3" /protein_id="EOY07923.1" /db_xref="TAIR:AT2G36910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZR72" /translation="MWTGERQTTKMRIKYLEAALNQDIQYFDTEVRTSDVVFAINTDA VMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPLIAVIGAIHTTTLA KLSAKSQAALSHGGNIVEQTVVQIRVVMAFVGESRTLQAYSSALKVAQKIGYKSGFAK GMGLGATYFVVFCCYALLLWYGGYLVRHHYTNGGLAIATMFAVMIGGLGLGQSAPSMS AFAKAKVAAAKIFRIIDHKPGIDRNSESGLELESVNGLVELKNVDFAYPSRPDVKILN NFSLSVPAGKTIALVGSSGSGKSTVVSLIERFYDPISGEVLLDGHDIKTLKLRWLRQQ IGLVSQEPALFATTIKENILLGRPDANQIEIEEAARVANAHSFIVKLPEGFDTQVGER GLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVI AHRLSTIRKADVVAVLQQGSVSEIGTHDELISKGENGVYAKLIRMQEMAHETALNNAR KSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLEASHPNYRMEKLA FKEQASSFWRLAKMNSPEWVYALVGSIGSVVCGSLSAFFAYVLSAVLSVYYNPDHAYM SREIGKYCYLLIGLSSAALLFNTLQHFFWDIVGENLTKRVREKMLAAVLKNEMAWFDQ EENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAV FPVVVAATVLQKMFMKGFSGDLEAAHAKATQLAGEAIANVRTVAAFNSENKIVGLFSS NLQTPLRRCFWKGQIAGSGFGVAQFSLYASYALGLWYASWLVKHGISDFSKTIRVFMV LMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRKTEVEPDDPDATQVPDRLRGEVEL KHVDFSYPSRPDVPIFRDLNLRARAGKTLALVGPSGCGKSSVIALIQRFYEPSSGRVM VDGKDIRKYNLKSLRKHIAIVPQEPCLFGSTIYENIAYGHESATEAEIIEAATLSNAH KFISSLPDGYKTFVGERGVQLSGGQKQRIAIARALVRKAELMLLDEATSALDAESERS VQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIEDGKVAEQGSHSHLLKNYPDGCYAR MIQLQRFTHSQVVGMTSGSSSSARPKDDNEREA" gene complement(3369715..3376464) /locus_tag="TCM_022246" /note="dbxref CacaoGD:Thecc1EG022246" mRNA complement(join(3369715..3370750,3375313..3375412, 3375748..3376464)) /locus_tag="TCM_022246" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.22 coverage" CDS complement(join(3370693..3370750,3375313..3375412, 3375748..3376051)) /locus_tag="TCM_022246" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07924.1" /translation="MEEVEVCDNVGSQKVMSGPLPLVEEVVSGCNGMDNMVHGSSGFG SKDMIMRNGLEVSYVDVVRKKASVASTFCGGSDRGKQVVIVSVESTPGDDAAEFCEAG GFGPTVLVLEGYYALYRVSFKAYGCDVLLPLSGYFLLYEVFLPSLLLLAPF" mobile_element 3376402..3381898 /note="source:INTACT271_F62_scaffold_5-int 1 5497" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3381970..3385631 /note="source:CACAO_M_S_E52027_F3_scaffold_5 1 3662" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3385732..3391699 /note="source:CACAO_M_S_E52027_F3_scaffold_5 3663 9630" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(3387593..3397782) /locus_tag="TCM_022248" /note="dbxref CacaoGD:Thecc1EG022248" mRNA complement(join(3387593..3387983,3393672..3393981, 3394070..3394172,3394255..3394322,3394417..3394562, 3395091..3395280,3396288..3397782)) /locus_tag="TCM_022248" /product="AMP-dependent synthetase and ligase family protein, putative" /inference="alignment:exonerate- protein:2:ricco:30078.m002285" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042143t1" /inference="similar to AA sequence:ricco:30078.m002285" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2211t2" CDS complement(join(3393868..3393981,3394070..3394172, 3394255..3394322,3394417..3394562,3395091..3395280, 3396288..3397520)) /locus_tag="TCM_022248" /note="dbxref ricco:30078.m002285; paralog of Thecc1EG042143t1" /codon_start=1 /product="AMP-dependent synthetase and ligase family protein, putative" /protein_id="EOY07925.1" /db_xref="TAIR:AT4G05160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M0X9" /translation="MFRYLFCTKERYNLRKKKSNLINLFNYFWQVDVTPLYNCLFLLS QTLFKSSKKQASQSPNPISCKQTLAMAKSFNPKTQTYTSPRPPIKLPTNPELSLTSFI FESTSSIPHETALIDSSNSNETLTFLQLKAQVSSLAYALHHQFHIAKSDVVLILAPNS IRFPISFLAIISLGAIATTANPSFTFNEISKQVNDCRPKLIITIPELYSKVHQFNVPL IFLQSSSSSTNLFLDFSQNPKFSYYSDVIQKYTPPSNFRPYVVRQNDVAALMYSSGTT GTSKGVMLTHKNFIASSLNFTADQDRYNEGRVVCLCFLPMFHGFGSVLSFAQLRRGNV LVSMAKFELEKVLAAVEKFGVTLLFAVPPVMVSLAKRGEVTKHDLSSLRQIISSAAPL SGDVIETCAKNLAHVEIFQGYGMTEACGKISLENPKEGRRFSGSTGTLMPVIESKIVS VNTMKPLPPHQIGEIWIRGPTIMQGYFNNPKATKLAMDEKGWLRTGDLGYFDEQGQLF VVDRIKELIKCNGFQVAPAELEGLLLSHPEIVDVVVIPFPDVKAGEVPIAYIVRAPNS SLNEDDVKIFIAEKVAPYKRLRRVTFLNSVPRSASGKILRRELIQKVRSKI" mobile_element complement(3400233..3400655) /note="source:INTACT458_F219_scaffold_7-int 17837 18131" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3401192..3402132 /note="source:INTACT157_F155_scaffold_1-int 889 1828" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3401700..3403787) /note="source:CACAO_M_E12044_F76_scaffold_2 18128 20177" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3402139..3405619 /note="source:INTACT157_F155_scaffold_1-int 2200 5584" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3405593..3408496) /note="source:INTACT61_F128_scaffold_2-int 5685 8607" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3408497..3410684 /note="source:CACAO_M_S_E52028_F317_scaffold_5 1 2188" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3410785..3411471 /note="source:CACAO_M_S_E52028_F317_scaffold_5 2189 2875" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3411472..3412694 /note="source:INTACT375F_F353_scaffold_3-int 11751 12974" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3412695..3414719 /note="source:INTACT157_F155_scaffold_1-int 9608 11041" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3414193..3414932 /note="source:CACAO_M_S_E38315_F276_scaffold_4 19252 20031" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3415313..3415402) /note="source:INTACT554_F250_scaffold_7-int 16885 16973" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3415324..3416252 /note="source:INTACT345_F202_scaffold_1-int 889 1828" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3415824..3417321) /note="source:CACAO_M_E12044_F76_scaffold_2 4342 5806" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3417512..3420705 /note="source:CACAO_M_E143_F311_scaffold_1 1861 5083" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(3421703..3424846) /locus_tag="TCM_022253" /note="dbxref CacaoGD:Thecc1EG022253" mRNA complement(join(3421703..3422487,3422576..3422678, 3422761..3422828,3422923..3423068,3423597..3423786, 3424804..3424846)) /locus_tag="TCM_022253" /product="AMP-dependent synthetase and ligase family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031500001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022248t1" /inference="similar to AA sequence:Phytozome:Glyma13g39770.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01144t00002" CDS complement(join(3422374..3422487,3422576..3422678, 3422761..3422828,3422923..3423068,3423597..3423777)) /locus_tag="TCM_022253" /note="paralog of Thecc1EG022248t1" /codon_start=1 /product="AMP-dependent synthetase and ligase family protein" /protein_id="EOY07926.1" /db_xref="Phytozome:Glyma13g39770.1" /db_xref="TAIR:AT4G05160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M0X9" /translation="MTEACGKISLENPKEGRRFSGSTGTLMPVIESKIVSVNTMKPLP PHQIGEIWIRGPTIMQGYFNNPEATKLAMDEKGWLRTGDLGYFDEQGQLFVVDRIKEL IKCNGFQVAPAELEGLLLSHPEIVDVVVIPFPDVKAGEVPMAYIVRAPNSSLNEDDVK IFIAEKVAPYKRLRRVTFLNSVPRSASGKILRRELIQKVRSKI" mobile_element 3424355..3424511 /note="source:CACAO_Mutator_E149_scaffold_1 120 285" /mobile_element_type="transposon:TIR/Mutator" mobile_element 3425553..3425798 /note="source:INTACT383F_F354_scaffold_3-int 2298 2566" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(3426600..3427137) /note="source:CACAO_Again_on_S_E4_scaffold_1 5 512" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(3428412..3428984) /note="source:CACAO_Mariner_E176_scaffold_6 3749 4325" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(3428939..3429034) /note="source:scaffold_4_CACTA_0490 3111 3203" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3428962..3429032 /note="source:scaffold_8_CACTA_0856 904 973" /mobile_element_type="transposon:TIR/CACTA" gene 3429549..3432566 /locus_tag="TCM_022254" /note="dbxref CacaoGD:Thecc1EG022254" mRNA join(3429549..3430056,3430442..3430542,3430754..3430867, 3430955..3431056,3432059..3432566) /locus_tag="TCM_022254" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30078.m002284" /inference="similar to AA sequence:ricco:30078.m002284" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:PASA:2:TSA:puevd3b021541t1a2; inference alignment:Newbler:10:TSA:cgbaL_g01028t00001" mRNA join(3429712..3430056,3430442..3430542,3430751..3430867, 3430955..3431056,3432059..3432381) /locus_tag="TCM_022254" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30078.m002284" /inference="similar to AA sequence:ricco:30078.m002284" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01028t00001; inference alignment:Newbler:10:TSA:cgbaL_g01028t00001" CDS join(3429855..3430056,3430442..3430542,3430751..3430867, 3430955..3431056,3432059..3432229) /locus_tag="TCM_022254" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30078.m002284" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY07927.1" /db_xref="TAIR:AT2G36895.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A8MSG0" /translation="MAKTSTIVFSSCPSLSRWRETNSFLPTSFRFSSRPSRFLRFSSK ASDSGSFLGDDSFGFFPWSPDNNDVEWVQEERVTLFTSDGLIQIGGSMVPRRLTSSDK KQGKSKMSQKFQRFQESDYMDPNQSLCLGALFDIAATNGLDMGRRLCIIGFCRSIEML SDVVEDTVLEHGGEVVAAEKASKGGLHEKLTMTVAVPYLWGVPPASETLHLAVRSGGG IVEKVYWQWDFF" CDS join(3429855..3430056,3430442..3430542,3430754..3430867, 3430955..3431056,3432059..3432229) /locus_tag="TCM_022254" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30078.m002284" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY07928.1" /db_xref="TAIR:AT2G36895.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A8MSG0" /translation="MAKTSTIVFSSCPSLSRWRETNSFLPTSFRFSSRPSRFLRFSSK ASDSGSFLGDDSFGFFPWSPDNNDVEWVQEERVTLFTSDGLIQIGGSMVPRRLTSSDK QGKSKMSQKFQRFQESDYMDPNQSLCLGALFDIAATNGLDMGRRLCIIGFCRSIEMLS DVVEDTVLEHGGEVVAAEKASKGGLHEKLTMTVAVPYLWGVPPASETLHLAVRSGGGI VEKVYWQWDFF" mobile_element 3431130..3431227 /note="source:CACAO_M_E69780_F2_scaffold_9 1555 1653" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3435677..3435702) /note="source:CACAO_M_S_E4863_F51_scaffold_1 5692 5768" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3435703..3435746) /note="source:CACAO_Mutator_E1149_scaffold_5 4717 4760" /mobile_element_type="transposon:TIR/Mutator" gene complement(3435951..3437965) /locus_tag="TCM_022255" /note="dbxref CacaoGD:Thecc1EG022255" mRNA complement(join(3435951..3437008,3437375..3437504, 3437669..3437965)) /locus_tag="TCM_022255" /product="Myb domain protein 36" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s12530.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042012t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s12530.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2225t1" CDS complement(join(3436249..3437008,3437375..3437504, 3437669..3437804)) /locus_tag="TCM_022255" /note="paralog of Thecc1EG042012t1" /codon_start=1 /product="Myb domain protein 36" /protein_id="EOY07929.1" /db_xref="Phytozome:POPTR_0006s12530.1" /db_xref="TAIR:AT5G57620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TIR5" /translation="MGRAPCCDKANVKKGPWSPEEDAKLKEHIEKQGTGGNWIALPPK AGLKRCGKSCRLRWLNYLRPNIKHGEFSDDEDRIICTLYASIGSRWSIIAAQLPGRTD NDIKNYWNTKLKKKLFGMAPQSHRKPHHVHHASFSSLLQSSSTSSPSPSPPLSSPSST LLYNCSNNTYNTPARSFRCFEVSYSSNFSNSSASCVTAASVLQPRESLLGPTQHYRLQ DGLQMFGGEASCSSSDGSCSNQISQNKELEYEYGGARGSNGANNGEQMGMHSYFCNEA DESQTLMASNGGCANGWSEKSSNGLWGETVPLDYGFEEIKQLICTSSCSSFIFDENKA EEKVMYY" mobile_element complement(3436927..3437010) /note="source:scaffold_3_CACTA_0395 939 1022" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3439293..3439323 /note="source:CACAO_M_E49559_F88_scaffold_7 7640 7726" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3439324..3439386) /note="source:CACAO_M_E3248_F5_scaffold_1 3676 3737" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3439334..3439421 /note="source:scaffold_10_CACTA_0130 1138 1223" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3439338..3439450 /note="source:CACAO_M_E47_F305_scaffold_1 1294 1401" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3441599..3443119) /note="source:INTACT60_F127_scaffold_9-int 13188 14709" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3443220..3444259 /note="source:INTACT1330F_F382_scaffold_8-int 2896 3947" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3444360..3444637) /note="source:INTACT60_F127_scaffold_9-int 11810 12087" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3444738..3445276 /note="source:INTACT1330F_F382_scaffold_8-int 4252 4790" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3445993..3447331) /note="source:INTACT1330F_F382_scaffold_8-int 7600 8940" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3447432..3448797 /note="source:INTACT60_F127_scaffold_9-int 8550 9915" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3449029..3449771) /note="source:INTACT52F_F339_scaffold_1-int 3472 4214" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3450146..3450500 /note="source:INTACT1330F_F382_scaffold_8-int 5686 6039" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3450601..3451616 /note="source:INTACT60_F127_scaffold_9-int 13517 14527" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3457891..3458538 /note="source:INTACT1330F_F382_scaffold_8-int 7956 8603" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3459099..3460689 /note="source:INTACT1330F_F382_scaffold_8-int 9161 10751" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3460790..3462521) /note="source:INTACT60_F127_scaffold_9-int 14257 15999" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3462622..3462924 /note="source:INTACT52F_F339_scaffold_1-int 1973 2273" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3463069..3465261) /note="source:INTACT52F_F339_scaffold_1-int 1 2285" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3465744..3466466) /note="source:scaffold_4_CACTA_0482 16794 17506" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3466607..3466701) /note="source:scaffold_9_CACTA_0936 327 421" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3467170..3467872 /note="source:INTACT5_F105_scaffold_4-int 712 1416" /mobile_element_type="retrotransposon:LTR/Unclassified" gene 3469889..3476681 /locus_tag="TCM_022261" /note="dbxref CacaoGD:Thecc1EG022261" mRNA join(3469889..3470253,3470362..3470481,3470877..3471031, 3471123..3471476,3471818..3472022,3472300..3472363, 3472456..3472506,3472886..3473005,3473535..3473659, 3474508..3474559,3475381..3475524,3475944..3476681) /locus_tag="TCM_022261" /product="5\'-AMP-activated protein kinase-related, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30078.m002276" /inference="similar to AA sequence:Phytozome:GSVIVT01033649001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2260t3; inference alignment:Newbler:10:TSA:cgbaB_g04569t00001; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc999t13" mRNA join(3469928..3470253,3470362..3470481,3470877..3471031, 3471123..3471476,3471818..3472022,3472300..3472363, 3472456..3472506,3472625..3472678,3472886..3473005, 3473535..3473659,3474508..3474559,3475381..3475524, 3475944..3476489) /locus_tag="TCM_022261" /product="5\'-AMP-activated protein kinase-related, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30078.m002276" /inference="similar to AA sequence:Phytozome:GSVIVT01033649001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04569t00001; inference alignment:Newbler:10:TSA:cgbaB_g04569t00001" mRNA join(3470048..3470253,3470362..3470481,3470877..3471031, 3471128..3471476,3471818..3472022,3472300..3472363, 3472456..3472506,3472625..3472678,3472886..3473005, 3473535..3473659,3474508..>3474555) /locus_tag="TCM_022261" /product="5\'-AMP-activated protein kinase-related, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:30078.m002276" /inference="similar to AA sequence:ricco:30078.m002276" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00147t00004; inference alignment:Newbler:10:TSA:cgbaB_g04569t00001; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc999t13" CDS join(3470099..3470253,3470362..3470481,3470877..3471031, 3471123..3471476,3471818..3472022,3472300..3472363, 3472456..3472506,3472625..3472678,3472886..3473005, 3473535..3473659,3474508..3474559,3475381..3475479) /locus_tag="TCM_022261" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="5\'-AMP-activated protein kinase-related, putative isoform 1" /protein_id="EOY07930.1" /db_xref="Phytozome:GSVIVT01033649001" /translation="MATLFHFPTLLFLSSHKSLISSKPQQWLSWKIHEYPPRRSLKIC AFSIKRPRSGRKVKSNEELCNDIREFVAAVELPDGQVPSVKELSQHGRNDLANIVRRR GYKLIKKLLTSSPEIDIDGFNAEKSVVEKCDATVDSEDILEGQNQKGENAIEDVSLPT EVFSMGNSLIGVYSDSDDHSCMKENTTHTSGDQKEMENAIVEDASPSTFLSNEENYSG SLNANPDLNSEDRSSMPEKSIAMSILEEKVAKFVQNGDLDSIDYNVGGMLNESADKES NEVVETNIEVATQSRTNSQECSEHAYGAAIILKGSTTVAKQVAPPMAVNYLPWSHDNM EAHMLKGDDLREDLNSETTGRDNQIEINHLKFMLHQKELELSCLKEQIEKEKIALSAL QTKAEIEIHKAQKLVSEKDAELHAAEESLSGLEEVQIEYSGDGEIVEVAGSFNGWHHR IKMDPKPSSTIKNPIESRKSKLWSTVLWLYPGIYEIKFIVDGKWEIDPQRESTDKGGI CNNILRVDR" CDS join(3470099..3470253,3470362..3470481,3470877..3471031, 3471123..3471476,3471818..3472022,3472300..3472363, 3472456..3472506,3472886..3473005,3473535..3473659, 3474508..3474559,3475381..3475479) /locus_tag="TCM_022261" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="5\'-AMP-activated protein kinase-related, putative isoform 2" /protein_id="EOY07931.1" /db_xref="Phytozome:GSVIVT01033649001" /translation="MATLFHFPTLLFLSSHKSLISSKPQQWLSWKIHEYPPRRSLKIC AFSIKRPRSGRKVKSNEELCNDIREFVAAVELPDGQVPSVKELSQHGRNDLANIVRRR GYKLIKKLLTSSPEIDIDGFNAEKSVVEKCDATVDSEDILEGQNQKGENAIEDVSLPT EVFSMGNSLIGVYSDSDDHSCMKENTTHTSGDQKEMENAIVEDASPSTFLSNEENYSG SLNANPDLNSEDRSSMPEKSIAMSILEEKVAKFVQNGDLDSIDYNVGGMLNESADKES NEVVETNIEVATQSRTNSQECSEHAYGAAIILKGSTTVAKQVAPPMAVNYLPWSHDNM EAHMLKGDDLREDLNSETTGRDNQIEINHLKFMLIALSALQTKAEIEIHKAQKLVSEK DAELHAAEESLSGLEEVQIEYSGDGEIVEVAGSFNGWHHRIKMDPKPSSTIKNPIESR KSKLWSTVLWLYPGIYEIKFIVDGKWEIDPQRESTDKGGICNNILRVDR" CDS join(3470999..3471031,3471128..3471476,3471818..3472022, 3472300..3472363,3472456..3472506,3472625..3472678, 3472886..3473005,3473535..3473659,3474508..>3474553) /locus_tag="TCM_022261" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30078.m002276" /codon_start=1 /product="5\'-AMP-activated protein kinase-related, putative isoform 3" /protein_id="EOY07932.1" /db_xref="TAIR:AT5G03420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTG2" /translation="MLLLTLKIFWKNQKGENAIEDVSLPTEVFSMGNSLIGVYSDSDD HSCMKENTTHTSGDQKEMENAIVEDASPSTFLSNEENYSGSLNANPDLNSEDRSSMPE KSIAMSILEEKVAKFVQNGDLDSIDYNVGGMLNESADKESNEVVETNIEVATQSRTNS QECSEHAYGAAIILKGSTTVAKQVAPPMAVNYLPWSHDNMEAHMLKGDDLREDLNSET TGRDNQIEINHLKFMLHQKELELSCLKEQIEKEKIALSALQTKAEIEIHKAQKLVSEK DAELHAAEESLSGLEEVQIEYSGDGEIVEVAGSFNGWHHRIKMDPKPSSTIKNPIESR KSKLWSTVLWLYPGI" gene 3476801..3479583 /locus_tag="TCM_022262" /note="dbxref CacaoGD:Thecc1EG022262" mRNA join(3476801..3477534,3478421..3478518,3478643..3478714, 3478815..3478939,3479038..3479110,3479261..3479583) /locus_tag="TCM_022262" /product="GATA zinc finger domain-containing protein 10" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g20490.1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400006869" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13427t1" CDS join(3477237..3477534,3478421..3478518,3478643..3478714, 3478815..3478939,3479038..3479110,3479261..3479365) /locus_tag="TCM_022262" /codon_start=1 /product="GATA zinc finger domain-containing protein 10" /protein_id="EOY07933.1" /db_xref="Phytozome:PGSC0003DMP400006869" /db_xref="TAIR:AT2G36885.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8S8F1" /translation="MAVVNASTAFSLRASPILPAASFPYSRPTSFGTPTRLLHAMQPR GKRKGLLSRSFAVKNELSEPDDGADAKVEELGEPTETLLYSFSPLPLLVVAALPGAGT VRSLFGPFVELVKSWNLPDWLVHWGHPGNMAVVLFAMGGYGTYLGFRIRYSDDVEEKA KAKDLHPKLLGGMFFFFALGATGGITSLLTSDKPIFESPHAITGFIGLTLLTIQTLLP TLFEGNPGLRNVHGILGSGIMTLFLIHAALGLQLGLSY" gene complement(3479562..3483132) /locus_tag="TCM_022263" /note="dbxref CacaoGD:Thecc1EG022263" mRNA complement(join(3479562..3480071,3480149..3480324, 3480404..3480581,3480984..3481087,3482179..3482217, 3482309..3482360,3482441..3482865,3482958..3483132)) /locus_tag="TCM_022263" /product="Uncharacterized protein" /inference="similar to AA sequence:Phytozome:Glyma04g30640.1" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.21 coverage" CDS complement(join(3479985..3480071,3480149..3480324, 3480404..3480581,3480984..3481087,3482179..3482217, 3482309..3482360,3482441..3482865,3482958..3482961)) /locus_tag="TCM_022263" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07934.1" /db_xref="Phytozome:Glyma04g30640.1" /translation="MEDEVNDAIFNCDRNKALRLDGFNFNFFKAQLVSIKEEVMAFMK KFYDTSTFDERINSSIITLIPKCYNPMVLNEYKSISLVRSVYKVVTNVFANRFRVVIG EVVGLNQFTFIKGRQIVNCALIANELVDSLQKSRDGGVFFKVKEVDHFMYHFGCRFGS EAFSALVHKAVVIAGHYSPSSFCRAGLGNNGTEVELWKNVWDGLPPSKVKSKWPSENG SITDVVNASFLACESIMRKYFVGKTTSGMAQVQHRWGYQRVSWTSREQWVLAIREVVV IFAASSWASDTGIIIESDSKNAVAWITNPEASSWTLRQLILKIIALKNDLDKRFDSNV SLDNSCWGVGGPGLFMALPD" mobile_element 3483501..3483898 /note="source:CACAO_M_E70014_F74_scaffold_10 620 988" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3485559..3485779) /note="source:INTACT60_F127_scaffold_9-int 13246 13466" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3485880..3486560 /note="source:INTACT1330F_F382_scaffold_8-int 2792 3485" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3486874..3489184 /note="source:INTACT1330F_F382_scaffold_8-int 3799 6101" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 3488094..3492092 /locus_tag="TCM_022266" /note="dbxref CacaoGD:Thecc1EG022266" mRNA join(3488094..3489098,3489838..3492092) /locus_tag="TCM_022266" /product="Gag-pro-like protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400063108" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011047t1" /inference="similar to AA sequence:Phytozome:Glyma0071s00200.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.32 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc9Loc5216t1_G2" CDS join(3488112..3489098,3489838..3491718) /locus_tag="TCM_022266" /note="paralog of Thecc1EG011047t1" /codon_start=1 /product="Gag-pro-like protein" /protein_id="EOY07935.1" /db_xref="Phytozome:Glyma0071s00200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D0E2V7" /translation="MEEEQRERMDRMERAQEEMREQLAKMMELMMSLSKGKRAIEEPA PSENPPAQDSGNQREDPPYPPGFTPPHAQTSQRVHPQVIPPVYYNAPPPLGHQPIHGQ FGPYSGINPAEPINVPDLDDPIEQEKLRKDLSQTGENEKDQKKYDLLEERLRAIEGVD RFGTMDATELCLVPDVLIPAKFKVPEFEKYDGTKCPMAHITMYCRKMAAQSHDDKLLI HFFQDSLTGSAARWYVQLDRNRIKTWKDLARAFITQYKHVAELAPDRLSLQTMEKKQS ENFKEYAQRWRDTAAQVQPPLTDKEMTVLFINTLRAPFYERLIGNATKNFADLINAIT PEPIDTKEVGHDLTYSCKFHMGAIGHSIQNCDGFRRKLQELMDSSIIEFYEGAEENLV GTISGDTPAEVASSSFGANKPKPLTIFYEENRSPMNDTSPTMIRSGITIEVPNPFPYK SDKAVPWNYQCNISGTASSAPQASFEDLTGVGGITRSGRCYSPEVAEKVGKEKLTQGE GGLKKADTFSKDQVDESVVAPNNEVKNPVTEKEAGEFLKFIKHSEYSVVEQLTKMPAR ISLLSLLLNSEAHRNALLKVLNQAYVAQDISVEKLDHIVGNITVGNFIAFNDEEIPSG GRGSNKALHITIKCKDHAVPRVLVDNGSALNVMPRSTLTKLPVDVSYMRTSRMVVRAF DGTTREVVGDIELPIKIGPCIFEVQFQVMDIAPSYNCLLGRPWIHMAGAVPSSLHQKV KFIAKGQLISVCAEEDILAIQPSSAPYVEATEEVPECSFRSFEFVNATYIGEKKVIPT PRLSVATKMGVKQTVGKGCRAGLGLGKNLQGINRPLTPMKNEERFGLGYKPTKEERRK LTAQKKIKRMAQLEGKEEEFGERTIPHLYETFRSAGFIHPEAPPKVNQVLRMFDELSI HMIRDEEPDGKIPVVYPVLPGEELSNWTATELPIVFKSPKM" mobile_element 3489814..3492905 /note="source:INTACT1330F_F382_scaffold_8-int 6730 9818" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3496482..3496860 /note="source:scaffold_5_CACTA_0586 15350 16103" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3497539..3497555 /note="source:scaffold_5_CACTA_0586 16104 16140" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3499304..3500216 /note="source:CACAO_on_E459_scaffold_2 1648 2549" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 3501057..3502508 /note="source:INTACT58_F125_scaffold_5-int 14729 16037" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3502196..3503387) /note="source:INTACT157_F155_scaffold_1-int 792 1846" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 3503038..3510059 /locus_tag="TCM_022268" /note="dbxref CacaoGD:Thecc1EG022268" mRNA join(3503038..3503479,3507399..3507685,3508496..3510059) /locus_tag="TCM_022268" /product="Methionine adenosyltransferase 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033651001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026823t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s12510.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc961t7" mobile_element 3503476..3503865 /note="source:CACAO_on_E205_scaffold_7 4782 5187" /mobile_element_type="transposon:TIR/Mutator" mobile_element 3503866..3504851 /note="source:INTACT157_F155_scaffold_1-int 883 1864" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3504635..3506058) /note="source:CACAO_M_E34142_F67_scaffold_4 3704 5116" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3504801..3506065) /note="source:INTACT58_F125_scaffold_5-int 14729 16037" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS 3508498..3509670 /locus_tag="TCM_022268" /note="paralog of Thecc1EG026823t1" /codon_start=1 /product="Methionine adenosyltransferase 3" /protein_id="EOY07936.1" /db_xref="Phytozome:POPTR_0006s12510.1" /db_xref="TAIR:AT2G36880.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TIR8" /translation="MDTFLFTSESVNEGHPDKLCDQVSDAILDACLEQDPESKVACET CTKTNMVMVFGEITTKAKVNYEKIVRDTCRGIGFTSADVGLDADNCKVLVNIEQQSPD IAQGVHGHLSKKPEEIGAGDQGHMFGYASDETPELMPLTHVLATKIGAKLTEVRKNKT CPWVRPDGKTQVTVEYRNEGGAMVPIRVHTVLISTQHDETVTNEQIAADLKEHVIKPV IPAKYLDDNTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPT KVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVPEPLSVFVDTYKTGKIPDKDIL ELIKENFDFRPGMISINLDLMRGGKFRYQKTAAYGHFGRDDPDFTWEVVKPLKPKA" gene complement(3510125..3511235) /locus_tag="TCM_022269" /note="dbxref CacaoGD:Thecc1EG022269" mRNA complement(join(3510125..3510590,3510855..3510880, 3510991..3511235)) /locus_tag="TCM_022269" /product="Thioredoxin superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s12500.1" /inference="similar to AA sequence:ricco:30078.m002279" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc840t12_C1" CDS complement(join(3510371..3510590,3510855..3510880, 3510991..3511137)) /locus_tag="TCM_022269" /note="dbxref ricco:30078.m002279" /codon_start=1 /product="Thioredoxin superfamily protein" /protein_id="EOY07937.1" /db_xref="TAIR:AT3G53220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2EBQ3" /translation="MEGGGDGSKKGLEGTGLDLPQNKHGNLKSASSDQNLRDLLLHIK SSKTSTVINYGASWCGVCSQILPAFCRLSNQFPKLSFIYADIDECPETTQHIRYTPTF LFYRDGERVDEMFGAGEERLQDRLWLHS" gene complement(3511570..3518221) /locus_tag="TCM_022270" /note="dbxref CacaoGD:Thecc1EG022270" mRNA complement(join(3511570..3512174,3512281..3512333, 3512427..3512484,3512658..3512810,3512949..3513011, 3513488..3513559,3513736..3513816,3513929..3513979, 3514235..3514331,3514530..3514784,3514994..3515053, 3515275..3515357,3515505..3515622,3515711..3515868, 3515948..3515993,3517696..3518092)) /locus_tag="TCM_022270" /product="Phosphoadenosine phosphosulfate (PAPS) reductase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s12490.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033653001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04891t00001" mRNA complement(join(3511623..3512174,3512281..3512333, 3512427..3512484,3512658..3512810,3512949..3513011, 3513488..3513559,3513736..3513816,3513929..3513979, 3514235..3514331,3514530..3514784,3514994..3515053, 3515275..3515357,3515505..3515622,3515711..3515868, 3515948..3515993,3517696..3517804,3517984..3518221)) /locus_tag="TCM_022270" /product="Phosphoadenosine phosphosulfate (PAPS) reductase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s12490.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033653001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2376t5; alternateUTRof:Thecc1EG022270t1; inference alignment:Newbler:10:TSA:cgbaB_g04891t00001" CDS complement(join(3512097..3512174,3512281..3512333, 3512427..3512484,3512658..3512810,3512949..3513011, 3513488..3513559,3513736..3513816,3513929..3513979, 3514235..3514331,3514530..3514784,3514994..3515053, 3515275..3515357,3515505..3515622,3515711..3515868, 3515948..3515993,3517696..3517796)) /locus_tag="TCM_022270" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Phosphoadenosine phosphosulfate (PAPS) reductase family protein isoform 1" /protein_id="EOY07938.1" /db_xref="Phytozome:GSVIVT01033653001" /db_xref="TAIR:AT5G03430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZE4" /translation="MEIDKAIRESDDTRLKTKYNNAVYVIKRALALYSIEEVAFSFNG GKDSTVLLHLLRAGYFLHRREQNCPNGVLTDFPIRTIYFESASAFPEINSFTYDIAKM YGMQMDIIRSDFKSGLEMLLKAKPIRAIFLGVRIGDPTAVGQEQFSPSSPGWPSFMRV NPILDWSYRDVWAFLLTCKVQYCSLYDQGYTSIGSIYDTVPNALLSISNTSSKEKFKP AYLLPDGRLERAGRVKKISSSDGTRLPAINNGLDSVDSHRNRMFTASVIGVGDEILFG TVEDQLGRSLCRKLHSISWLTSQTAVVRNDIDSVAEEIERRKSTNDVVFLYGGVGPLH SDVTLAGVAKAFGVRLAPDEEFEEYLRHLIGDHCTGDRNEMAQLPEGITELLHHEKLP VPLIKCRNVIVLSATNATELDKQWDCLIELTGSDGCLVTMEPYSSKRLTTNLTDVETA QPLSKLCLEFPDLYIGCFRESRQGPLVISFEGKDLARIHAAVETLCKKLHPEAFSEVN " CDS complement(join(3512097..3512174,3512281..3512333, 3512427..3512484,3512658..3512810,3512949..3513011, 3513488..3513559,3513736..3513816,3513929..3513979, 3514235..3514331,3514530..3514784,3514994..3515053, 3515275..3515357,3515505..3515622,3515711..3515868, 3515948..3515993,3517696..3517796)) /locus_tag="TCM_022270" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Phosphoadenosine phosphosulfate (PAPS) reductase family protein isoform 1" /protein_id="EOY07939.1" /db_xref="Phytozome:GSVIVT01033653001" /db_xref="TAIR:AT5G03430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZE4" /translation="MEIDKAIRESDDTRLKTKYNNAVYVIKRALALYSIEEVAFSFNG GKDSTVLLHLLRAGYFLHRREQNCPNGVLTDFPIRTIYFESASAFPEINSFTYDIAKM YGMQMDIIRSDFKSGLEMLLKAKPIRAIFLGVRIGDPTAVGQEQFSPSSPGWPSFMRV NPILDWSYRDVWAFLLTCKVQYCSLYDQGYTSIGSIYDTVPNALLSISNTSSKEKFKP AYLLPDGRLERAGRVKKISSSDGTRLPAINNGLDSVDSHRNRMFTASVIGVGDEILFG TVEDQLGRSLCRKLHSISWLTSQTAVVRNDIDSVAEEIERRKSTNDVVFLYGGVGPLH SDVTLAGVAKAFGVRLAPDEEFEEYLRHLIGDHCTGDRNEMAQLPEGITELLHHEKLP VPLIKCRNVIVLSATNATELDKQWDCLIELTGSDGCLVTMEPYSSKRLTTNLTDVETA QPLSKLCLEFPDLYIGCFRESRQGPLVISFEGKDLARIHAAVETLCKKLHPEAFSEVN " mobile_element 3519833..3520493 /note="source:scaffold_4_CACTA_0483 14669 15354" /mobile_element_type="transposon:TIR/CACTA" gene complement(3521012..3524959) /locus_tag="TCM_022271" /note="dbxref CacaoGD:Thecc1EG022271" mRNA complement(join(3521012..3524086,3524292..3524959)) /locus_tag="TCM_022271" /product="Tetratricopeptide repeat-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033654001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027267t1" /inference="similar to AA sequence:Phytozome:Glyma13g20460.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.77 coverage" CDS complement(join(3521970..3524086,3524292..3524445)) /locus_tag="TCM_022271" /note="paralog of Thecc1EG027267t1" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative" /protein_id="EOY07940.1" /db_xref="Phytozome:Glyma13g20460.1" /db_xref="TAIR:AT2G29760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HKB8" /translation="MPIKLQECEEIKMNQGTTKNNRALFIFPVHELCLQVHATKKEAL QVYSFFRESCKSIKQAFQVHAQIILNGYHHQFFPISRLISFFALLGSRAGLDYSQILF CQIEHPNQFMYNTMIRGFSHSEFPEKALIFYSSMLHQENRPPNNFTFPFLLNSCARLS TLKPGIQVHSHIIKFGFDLDLFVRNALMHFYSVFKHLNDAQIVFEGSLVRDLVSYNTM INGSALVGQPDPALRLVKEMQDFGIQPDEFTFVALLSAFSSLNDSRIGKQIHGFVYRN LCRIDSNVVLKTAILDMYTKCGLMDLAERVFSSMASKSTAAWSSMVSGYARCGETEAA RRMFDQMDQRDLVCWTAMISGYSQSGQYSEALELFLQMEGLGIRPDEVTLAAVLSACA RLGALSLGERLHHRYIEGDLCYQNIILSNALIDMYSKCGKIDSALDMFHRIPKDLRTL SNFNSMISGLAQHGLGETALAVFREMEPIGLRPDRVTFVAVFSACSHSGLLEEGKELF RLMSDLYGIKPRMEHYGCMVDLLSRDGCLEEAYDIILGMPFEANSVIWRALLGACKRH GNVKIGEVASQKLIELEPDHGARYVLLSNMLANSNQWEEAGRVRKVMEDRGIQKPPGW SYIELEGTLHHFFASDKSHLHDKEIQSMLQDMAMRLKSAGYVPDTGQVVFDVDEEEKE SVVSYHSEKLALAFGLVNASPGETLRIMKNLRVCGDCHSAFKLLSEMYRREIIVRDAI RFHHFKNGSCSCKDFW" gene complement(3525302..3528606) /locus_tag="TCM_022272" /note="dbxref CacaoGD:Thecc1EG022272" mRNA complement(join(3525302..3525398,3525478..3525544, 3526535..3526622,3527352..3527537,3528526..3528606)) /locus_tag="TCM_022272" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30078.m002268" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043308t1" /inference="similar to AA sequence:ricco:30078.m002268" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13444t2" CDS complement(join(3525345..3525398,3525478..3525544, 3526535..3526622,3527352..3527460)) /locus_tag="TCM_022272" /note="dbxref ricco:30078.m002268; paralog of Thecc1EG043308t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07941.1" /db_xref="TAIR:AT5G03440.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HKB9" /translation="METNSGNRCSHENQPPTSSNNANKDQSTENEVFVNCAEISWHEI RRQWVGDRSQKSKRMPREPIMSWTTTYEDLLCSTEPFQQSIPLAEMVDFLVDIWHEEG LYD" mobile_element complement(3531406..3531468) /note="source:scaffold_4_CACTA_0507 7660 7723" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3531474..3532974) /note="source:scaffold_4_CACTA_0507 4694 6180" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3537435..3538399) /note="source:scaffold_4_CACTA_0511 12870 13838" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3540500..3540638) /note="source:scaffold_1_CACTA_0005 4647 4787" /mobile_element_type="transposon:TIR/CACTA" gene 3540811..3546401 /locus_tag="TCM_022276" /note="dbxref CacaoGD:Thecc1EG022276" mRNA join(3540811..3540825,3543003..3543042,3544239..3544472, 3544607..3544707,3544866..3545083,3545657..3546391) /locus_tag="TCM_022276" /product="Xyloglucan endotransglucosylase/hydrolase 32 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s12480.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042151t1" /inference="similar to AA sequence:Phytozome:Glyma03g34170.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05896t00001" CDS join(3543021..3543042,3544239..3544472,3544607..3544707, 3544866..3545083,3545657..3546023) /locus_tag="TCM_022276" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042151t1" /codon_start=1 /product="Xyloglucan endotransglucosylase/hydrolase 32 isoform 1" /protein_id="EOY07942.1" /db_xref="Phytozome:Glyma03g34170.1" /db_xref="TAIR:AT2G36870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SJL9" /translation="MFMVYRIVSFLSSWLSSTFLMALFLSLLLILMFPSTNADWPPSP GYWPSSKFRPMSFYNGFRNLWGPGHQSADQNALTIWLDRTSGSGFKSVRPFRSGYFGA SIKVQPGYTAGVITAFYLSNNEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDG KIIGREMKFHLWFDPTQDFHHYAIFWSPKEIIFLVDDVPIRRYPKKSAATFPLRPMWV YGSIWDASSWATEDGKYKADYRYQPFVAKYTNFKANGCSAYAPAWCRPVSASPFRSGG LTRQQYRAMRWVQRNHMVYDYCKDPKRNHALTPECWT" mRNA join(3544257..3544472,3544607..3544707,3545058..3545083, 3545657..3546401) /locus_tag="TCM_022276" /product="Xyloglucan endotransglucosylase/hydrolase protein 32 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s12480.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042151t1" /inference="similar to AA sequence:Phytozome:Glyma03g34170.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1255t3_C2; inference alignment:Newbler:10:TSA:cgbaP1_g05896t00001" CDS join(3544277..3544472,3544607..3544707,3545058..3545083, 3545657..3546023) /locus_tag="TCM_022276" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042151t1" /codon_start=1 /product="Xyloglucan endotransglucosylase/hydrolase protein 32 isoform 2" /protein_id="EOY07943.1" /db_xref="Phytozome:Glyma03g34170.1" /db_xref="TAIR:AT2G36870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SJL9" /translation="MALFLSLLLILMFPSTNADWPPSPGYWPSSKFRPMSFYNGFRNL WGPGHQSADQNALTIWLDRTSGSGFKSVRPFRSGYFGASIKVQPGYTAGVITAFYIFW SPKEIIFLVDDVPIRRYPKKSAATFPLRPMWVYGSIWDASSWATEDGKYKADYRYQPF VAKYTNFKANGCSAYAPAWCRPVSASPFRSGGLTRQQYRAMRWVQRNHMVYDYCKDPK RNHALTPECWT" gene complement(3547427..3554187) /locus_tag="TCM_022277" /note="dbxref CacaoGD:Thecc1EG022277" mRNA complement(join(3547427..3548650,3548914..3549034, 3550048..3550087,3550173..3550312,3550414..3550524, 3551759..3551808,3552037..3552124,3552718..3552840, 3552961..3553005,3553122..3553211,3553309..3553384, 3553780..3554187)) /locus_tag="TCM_022277" /product="Transducin/WD40 repeat-like superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033660001" /inference="similar to AA sequence:Phytozome:GSVIVT01033660001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:PASA:2:TSA:puevd3b021564t1a2; inference alignment:Newbler:10:TSA:cgbaB_g04576t00001" mRNA complement(join(3547427..3548650,3548844..3549034, 3549120..3549182,3550048..3550087,3550173..3550312, 3550414..3550524,3551759..3551808,3552037..3552124, 3552718..3552840,3552961..3553005,3553122..3553211, 3553309..3553384,3553780..3554186)) /locus_tag="TCM_022277" /product="Transducin/WD40 repeat-like superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033660001" /inference="similar to AA sequence:Phytozome:GSVIVT01033660001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04576t00001" CDS complement(join(3548164..3548650,3548844..3549034, 3549120..3549182,3550048..3550087,3550173..3550312, 3550414..3550524,3551759..3551808,3552037..3552124, 3552718..3552840,3552961..3553005,3553122..3553211, 3553309..3553384,3553780..3554177)) /locus_tag="TCM_022277" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein, putative isoform 1" /protein_id="EOY07944.1" /db_xref="Phytozome:GSVIVT01033660001" /db_xref="TAIR:AT5G03450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTG6" /translation="MYCRLFSLSFLFLPSNSLLNGLIHNPKMSNPYSNVYIVGDQESE DGTEPEAEEDEEDSEEEGGGGEEFIPVTEWPRFLSSKEGKKGGEGRVCLSAGEYGENS QGNEWNRGDIEGLFCPICMEAWTTTGDHHVCCLPCGHIYGFSCIHKWLQQRGTSRKCP QCNRKCTLKDVRKLFASRVVAIDGESQKRIRSLEANCISLEKTSAVLSKKETEWQKRE AEWQKSEAEWQKREAALQQEVHQLKEKTKYLEHLIDVQSRTFGCAPSIRGLQVPLGHN LGSEFNEQGPFILQKELRVDGARLFDVDASSKNLLIARRLQGLGGTHFLTKMSLVAPY ETEDISLPFGTKAVRDLHICPSDGSLALLASLGKKLSVLSTESNNVILAYDLPAAAWS CSWDLNRSHQIYAGLQNGSVLVFDMRQTARHMDSMNGLTSNPVHTIHSLHNSTIPSGI TAILSASSVGICQWSFGGSEERPFLVSETGNQGVCISLAYCPNSDDIIASYRPRIDFS NEMASSQPLLTPVNGQGVQGSHVHLKRAGSNSYQKLGVTCANVNDVRLPRFTIMNIEN HVCLFASGDELTGELVLQKLPSFTVVQRVTLPKHPIHDVKYSHAFDGGLLGCLSEDIL QLFSNHALK" CDS complement(join(3548511..3548650,3548914..3549034, 3550048..3550087,3550173..3550312,3550414..3550524, 3551759..3551808,3552037..3552124,3552718..3552840, 3552961..3553005,3553122..3553211,3553309..3553384, 3553780..3554177)) /locus_tag="TCM_022277" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein, putative isoform 2" /protein_id="EOY07945.1" /db_xref="Phytozome:GSVIVT01033660001" /db_xref="TAIR:AT5G03450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTG6" /translation="MYCRLFSLSFLFLPSNSLLNGLIHNPKMSNPYSNVYIVGDQESE DGTEPEAEEDEEDSEEEGGGGEEFIPVTEWPRFLSSKEGKKGGEGRVCLSAGEYGENS QGNEWNRGDIEGLFCPICMEAWTTTGDHHVCCLPCGHIYGFSCIHKWLQQRGTSRKCP QCNRKCTLKDVRKLFASRVVAIDGESQKRIRSLEANCISLEKTSAVLSKKETEWQKRE AEWQKSEAEWQKREAALQQEVHQLKEKTKYLEHLIDVQSRTFGCAPSIRGLQVPLGHN LGSEFNEQGPFILQKELRVDGARLFDVDASSKNLLIARRLQGLGGTHFLTKMSLVAPY ETEDISLPFGTKAVRDLHICPSDGSLALLASLGKKLSVLSTESNNVILAYDLPNGSVL VFDMRQTARHMDSMNGLTSNPVHTIHSLHNSTIPSGHFWFQRLAIKECVFLLLIVLTV MTLLLHIDHELTFQMRWHLLNLY" mobile_element 3550983..3551619 /note="source:INTACT687_F13_scaffold_3-int 1298 2052" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3554370..3554464 /note="source:scaffold_1_CACTA_0030 632 736" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3554454..3554549 /note="source:scaffold_1_CACTA_0030 656 752" /mobile_element_type="transposon:TIR/CACTA" gene 3555124..3557321 /locus_tag="TCM_022278" /note="dbxref CacaoGD:Thecc1EG022278" mRNA join(3555124..3555336,3555445..3555583,3556986..3557321) /locus_tag="TCM_022278" /product="Rhodanese/Cell cycle control phosphatase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s12460.1" /inference="similar to AA sequence:Phytozome:Glyma19g36900.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g03372t00001" CDS join(3555254..3555336,3555445..3555583,3556986..3557156) /locus_tag="TCM_022278" /codon_start=1 /product="Rhodanese/Cell cycle control phosphatase superfamily protein" /protein_id="EOY07946.1" /db_xref="Phytozome:Glyma19g36900.1" /db_xref="TAIR:AT5G03455.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GY31" /translation="MAKTISYITGSQLLSLNPHPNIAIIDVRDDERSYDGHIAGSLHY ASDTFTNKISNLIQDVKGKDTLVFHCALSQVRGPTCARRFANYLEEMKEDVGIKNILV LERGFNGWEASGRPVCRCTDVPCKGECA" mobile_element 3557587..3557706 /note="source:scaffold_5_CACTA_0617 4227 4343" /mobile_element_type="transposon:TIR/CACTA" gene 3558345..3561150 /locus_tag="TCM_022279" /note="dbxref CacaoGD:Thecc1EG022279" mRNA join(3558345..3558376,3558464..3558541,3558632..3558733, 3560933..3561150) /locus_tag="TCM_022279" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s12450.2" /inference="similar to AA sequence:ricco:30180.m001060" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13451t1" CDS join(3558374..3558376,3558464..3558541,3558632..3558733, 3560933..3561013) /locus_tag="TCM_022279" /note="dbxref ricco:30180.m001060" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07947.1" /translation="MVCIACLLPLFLVPIVNILPLLFHYIMGKIYKLFGWEYRKPERA PPACPYKPAAKTENVKKVGPETVPGSIPESSSKPVEVTDGKQD" mobile_element 3562976..3563039 /note="source:CACAO_M_E45230_F44_scaffold_6 623 685" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3563610..3563795 /note="source:CACAO_PIF_E119_scaffold_3 4472 4668" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(3565314..3565353) /note="source:CACAO_on_SS_E42_scaffold_2 8459 8498" /mobile_element_type="transposon:TIR/Mutator" mobile_element 3565451..3565915 /note="source:scaffold_1_CACTA_0008 14058 14468" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3566742..3566872 /note="source:CACAO_hAT_E2538_scaffold_5 1 135" /mobile_element_type="transposon:TIR/hAT" mobile_element 3566874..3567095 /note="source:CACAO_hAT_E71_scaffold_1 628 860" /mobile_element_type="transposon:TIR/hAT" gene 3568799..3573613 /locus_tag="TCM_022280" /note="dbxref CacaoGD:Thecc1EG022280" mRNA join(3568799..3569408,3569859..3570092,3570405..3570510, 3571006..3571342,3572619..3573613) /locus_tag="TCM_022280" /product="ACT-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30078.m002281.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043322t1" /inference="similar to AA sequence:Phytozome:Glyma19g36910.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:PASA:2:TSA:puevd3b021567t1a2; inference alignment:Newbler:10:TSA:cgbaL_g01700t00002" mRNA join(3568799..3569408,3569859..3570092,3570405..3570510, 3571006..3571342,3571841..3572125,3572619..3572798, 3572870..3572903) /locus_tag="TCM_022280" /product="ACT-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30078.m002281.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043322t1" /inference="similar to AA sequence:frave:gene09676" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01700t00002" CDS join(3569255..3569408,3569859..3570092,3570405..3570510, 3571006..3571342,3571841..3572125,3572619..3572756) /locus_tag="TCM_022280" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene09676; paralog of Thecc1EG043322t1" /codon_start=1 /product="ACT-like superfamily protein isoform 1" /protein_id="EOY07948.1" /db_xref="TAIR:AT2G36840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SJM1" /translation="MGILHDDVVIIRQSEKEGEPNVITVNCPDKTGLGCDLCRILLFF GLSIVRGDVSTDGKWCYIVFWVVCKPATRWGSSRWELLKKRLIGACPSCSSASGISYY RSELQPPKPPDVFLLKLCCYDRKGLLHDVTEVLCCLELNIKKVKVSTTPDGTVMDLFF VTDTRELLHTTKRQEETCKALEDVMQEAVISCNIQKVGPQITACSQASPFLPSQITED IFHLEMSNKLPSVSLTSNSVSVTMDNSLSPAHTLVQIICQDYKGLLYDIMRTLKDYNI QISYGRFYIKQGRKCEIDLFIMQADGKKIVDPSKQNALSSRLQMELLQPLRVAVMSRG PDTELLVANPVELSSKGRPLVFYDITLALKMLDTCIFSAEIGRHMIGDREWEVYRVLL DEGASLSVPRRKVEEGVWKLLMGWE" CDS join(3569255..3569408,3569859..3570092,3570405..3570510, 3571006..3571342,3572619..3572756) /locus_tag="TCM_022280" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG043322t1" /codon_start=1 /product="ACT-like superfamily protein isoform 2" /protein_id="EOY07949.1" /db_xref="Phytozome:Glyma19g36910.2" /db_xref="TAIR:AT2G36840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SJM1" /translation="MGILHDDVVIIRQSEKEGEPNVITVNCPDKTGLGCDLCRILLFF GLSIVRGDVSTDGKWCYIVFWVVCKPATRWGSSRWELLKKRLIGACPSCSSASGISYY RSELQPPKPPDVFLLKLCCYDRKGLLHDVTEVLCCLELNIKKVKVSTTPDGTVMDLFF VTDTRELLHTTKRQEETCKALEDVMQEAVISCNIQKVGPQITACSQASPFLPSQITED IFHLEMSNKLPSVSLTSNSVSVTMDNSLSPAHTLVQIICQDYKGLLYDIMRTLKDYNI QAEIGRHMIGDREWEVYRVLLDEGASLSVPRRKVEEGVWKLLMGWE" gene complement(3574224..3577714) /locus_tag="TCM_022282" /note="dbxref CacaoGD:Thecc1EG022282" mRNA complement(join(3574224..3574757,3574861..3575003, 3575137..3575228,3575348..3575416,3575497..3575563, 3575661..3575673,3575837..3575958,3576664..3576749, 3576864..3577000,3577087..3577278,3577603..3577714)) /locus_tag="TCM_022282" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Newbler:10:TSA:cgbaB_g17302t00001" CDS complement(join(3574727..3574757,3574861..3575003, 3575137..3575228,3575348..3575416,3575497..3575563, 3575661..3575673,3575837..3575958,3576664..3576749, 3576864..3576981)) /locus_tag="TCM_022282" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07950.1" /db_xref="TAIR:AT5G27730.1" /translation="MSLIKPLVSNLQKILKIKDAVNKITLRTLKLLFWGILLQGGYSH SLADNIDLVYGVGKELIRWCGILQVKCGMRGHLGPACNAVGYMDREILGINHLYKSPV RQRLKIQRLVKFNLSYSLGHHRHPLRACADTFQGPLSKAQTTGINGTWLTFSRLTHAI PINKQLYTISYVCLTAGAAGVVFSGVYILIHVWGLRTPFLFLEWIGMNSMLILCWGHK VYLQHSSVAGTITALTTHLSLGSKLMFS" mobile_element complement(3577111..3577426) /note="source:CACAO_M_E236673_F283_scaffold_308 1 342" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(3578351..3583289) /locus_tag="TCM_022283" /note="dbxref CacaoGD:Thecc1EG022283" mRNA complement(join(3578351..3578787,3578886..3579029, 3579132..3579223,3579328..3579409,3579499..3579565, 3579653..3579744,3579854..3579970,3580081..3580189, 3580297..3580412,3580587..3580663,3581015..3581096, 3582697..3582834,3582967..3583289)) /locus_tag="TCM_022283" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033665001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026658t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033665001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00699t00001" CDS complement(join(3578641..3578787,3578886..3579029, 3579132..3579223,3579328..3579409,3579499..3579565, 3579653..3579744,3579854..3579970,3580081..3580189, 3580297..3580412,3580587..3580663,3581015..3581096, 3582697..3582834,3582967..3583218)) /locus_tag="TCM_022283" /note="paralog of Thecc1EG026658t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07951.1" /db_xref="Phytozome:GSVIVT01033665001" /db_xref="TAIR:AT5G27730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C5Y7S6" /translation="MADPGKMEEGLAHEEGAPDQERKDKRDGKVEKEEDGAADRIGND KEERVATTHVEQQNLEEQPLVKQKTKRIATLDAFRGLTVVLMILVDDAGGAYPRIDHS PWNGCTLADFVMPFFLFIVGVAIALALKKVPKIKDAIKKISLRTLKLLFWGVLLQGGY SHAPADLAYGVDMKQIRWCGILQRIALVYFIVALIETLTRKRRPTVLEPGHLSIFTAY RWQWIGGFVAFVIYMITTYSLYVPHWSFVVDNDDEATRYTVKCGMRGHLGPACNAVGY VDREVWGINHLYSSPVWQRLKACTLSSPGSGPFRENAPSWCRAPFEPEGLLSSILAIL SGTMGIHYGHVLIHFKGHFERLKQWVSMALGLLIVAIILHFTDAIPINKQLYSFSYVC FTAAAAGIVFSAFYVLIDVWGFRTPFLFLEWIGMNAMLVYVLGAQGILAAFVNGWYYE SSNNTLVYWIQKHVFINVWHSERLGTLLYVIFAEIAFYGVLSGILHKLGIYWKL" mobile_element complement(3581476..3581583) /note="source:scaffold_4_CACTA_0482 7636 7747" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3581488..3581614 /note="source:scaffold_4_CACTA_0511 5711 5807" /mobile_element_type="transposon:TIR/CACTA" gene 3583473..3587339 /locus_tag="TCM_022284" /note="dbxref CacaoGD:Thecc1EG022284" mRNA join(3583473..3583918,3585412..3585991,3586138..3587339) /locus_tag="TCM_022284" /product="Major facilitator superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30078.m002264" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022288t1" /inference="similar to AA sequence:ricco:30078.m002263" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete" CDS join(3585471..3585991,3586138..3587269) /locus_tag="TCM_022284" /note="dbxref ricco:30078.m002263; paralog of Thecc1EG022288t1" /codon_start=1 /product="Major facilitator superfamily protein, putative" /protein_id="EOY07952.1" /db_xref="TAIR:AT2G39210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HKC4" /translation="MILTEKTGGGSRREMKSFFLAVLSSRLFMVFATIIIMSVNGSGY MFGLYSNDIKTTLGYDQTTLNLLSFFKDLGGNLGILSGLIYEVVPPWVVLSMGSVLNF FGYFMIWLSVTSRTAKPQVWQMCLYMWIAANSQSFPNTGALVTCVKNFPGSRGCVLGL LKGFIGLSGAIMTQFLYIALGLAGFIMVMIILQNRLSFTRTEYIGSASVVLILLLLPL VIVIKEEFNVSTSKTQASNTHSQLNVVIENPPAVPAKPAEATKEAFNCIKKMFKPPDR GEDYTILQAIFSIDMLILFIATACGTGGALTVIDNLGQLGKSLGYPTHSISAFISLVS IWNFLGRVLAGYLSEIVLTKYNFPRPLMLTFVILLSCVGHLLIAFAVPNSLYFASVMT GFCLGAQLPLLCAIISELFGLKHYSTMYNVGSVSSPVGSYIFNVRVAGHLYDKEAVKQ TEALGRTRKPGQDLNCSGAKCYRLAFLIITAATLFGSIVSLILVFRTRTFYKGDIYKK FKEEVVESQAGVAPTGHGGLSLREMEDNAIVTVPEKTALSDG" gene complement(3587368..3590628) /locus_tag="TCM_022285" /note="dbxref CacaoGD:Thecc1EG022285" mRNA complement(3587368..3590628) /locus_tag="TCM_022285" /product="Receptor protein kinase 4" /inference="alignment:exonerate- protein:2:ricco:30179.m000566" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043932t1" /inference="similar to AA sequence:ricco:30170.m014212" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2318t1" CDS complement(3588074..3590473) /locus_tag="TCM_022285" /note="dbxref ricco:30170.m014212; paralog of Thecc1EG043932t1" /codon_start=1 /product="Receptor protein kinase 4" /protein_id="EOY07953.1" /db_xref="TAIR:AT4G00340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I816" /translation="MAKYFPFLVLILFLFASIQFSSSAVPTLRQGSSLSVENPDDVLV SPRGVFSAGFYPVGHNAYCFAIWFSKPCHDGNHTTVWMANRDTPVNGRRSKLSILKTG NVILTDAGEVIIWTSDNRDSESWSELKLLDSGNLVLQTPENVTLWQSFDSPTDTLLPN QPLTRYKSLVSARSQTNYSSGFYKLIYDYDNVLRLVLDGPETSSIYWPDSTLLDYQQG RTRYNDSRIAVFDSQGYFTSSDKVEFRSTDFGRGPWRRLKLDFDGNLRLYTLEDQKGV WSVTWQVMSNPCRIHGACGPNSICSYDPSSGPKCSCPPGFKMKNQADWTDGCEPEFDL SCSNHDIEFVKLRHVNFFGYYYDILRNYTLKECAKACLDSCCIAFQYRYFPEDGAYRC YPKRELRNGHRYSSYNGTLYLKLPKSFTYDKPVEEFKLNCSSKQTKQLERAYQKETGY GSLKILIWCASVIGLIEMICIILVFCFLYKTQQSSDAATYGYLLVATGFKKFSYDELK KATRGFSEEIGRGGGGVVYKGVLSDQRVAAIKRLNIEANQGEEEFLAEISAIGRLNHM NLIEMWGYCAEGKHRLLVYEYMENGSLAKNLMSDSLDWKKRFQIAVGTAKGLAYLHEE CLEWVLHCDVKPQNILLDSNYNPKVADFGLSKLLSRNSLKSSSFSKVRGTRGYMAPEW VYNLPITSKVDIYSYGIVLLEMLTGRSPAIGVPAVKTSGEVWHQSLEEWVKGKKNGAA ATTSWVVELIDPAIGYDYDRNKLENLLEVAIKCTEADRHARPSMSRVVQMLVGDKIDP N" gene complement(3590041..3609306) /locus_tag="TCM_022286" /note="dbxref CacaoGD:Thecc1EG022286" mRNA complement(join(3590041..3590416,3597797..3598577, 3598989..3599549,3600081..3600524,3602016..3602179, 3603467..3603698,3604205..3604338,3604682..3604713, 3609253..3609306)) /locus_tag="TCM_022286" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400023308.2" /inference="similar to AA sequence:Phytozome:Glyma08g32320.1" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.14 coverage" mobile_element complement(3591590..3591920) /note="source:CACAO_hAT_E1468_scaffold_3 1486 1815" /mobile_element_type="transposon:TIR/hAT" mobile_element 3591625..3592730 /note="source:CACAO_on_E21_scaffold_4 90 1219" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(3595486..3595583) /note="source:CACAO_Again_on_E64_scaffold_2 705 790" /mobile_element_type="transposon:TIR/hAT" mobile_element 3595511..3596640 /note="source:CACAO_on_E2_scaffold_1 2 1124" /mobile_element_type="transposon:TIR/hAT" CDS complement(join(3598066..3598577,3598989..3599549, 3600081..3600524,3602016..3602179,3603467..3603698, 3604205..3604338,3604682..3604710)) /locus_tag="TCM_022286" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07954.1" /db_xref="Phytozome:Glyma08g32320.1" /translation="MGKREKKRVRITVVEADKSKNGKEHRKGLKTKIEKTQEKGGSGK TFKETLMQSQMNEMDYFMKTSIVDVERCDPRCRVGNITEGVSESKMSEKWLEEGDQVG WEDKDEGGILEENFKRLAIWEKADVRSQSRLGKNEKKRAMRRLVSKNRPDMLFIQETK LKEESRDIYERLWGKDKICGKSALAEVDWIRKRSVGGVILKIDFEKVYDNVCWEFMEL IMRKMGFMEKWIEWVRECSITARVSVLVNGSPTGQFGMEKGLRQGCPLFPFLFNIVVE AMSRMIKKAEILRLCKGVEIGNNGFIISHLQYADDTIFFCDPNLENLRELRRMLRCFQ VEKTRNDPSDLMPNTSVNRKVSTLWKRIISPFSPSNKYFLQVQSNFSFITGNGENLRF WQDDWLEGVTLAISFPRLFALAENTYGKVAKFGNWVDGFWEWKVETKIQLFDLEIDQP AQLQGMLQEQQVSKDFKDELIWKREPSGKYTYKSFCKYALSSMEIMEGIWKSVWAKLA PLRVEVFVWQMFLDIYRQPPIQSLHGKSMLGRKQIKWEMPKPSQMKFNMDGAARGSSG PIGIGGILKYSNGVVKVTFSKPIRLADANLVEILAVREAFVIFSTSRWKNDYSLCIES DSSNAVKWTKQPDTAPWKMRKWLIQMERMKEELNGWTIRHIMRETNERVDNLAKQGVQ LQSDIIQIF" gene 3608110..3624299 /locus_tag="TCM_022288" /note="dbxref CacaoGD:Thecc1EG022288" mRNA join(3608110..3608245,3616514..3619109,3624048..3624299) /locus_tag="TCM_022288" /product="Major facilitator superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30078.m002263" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043319t1" /inference="similar to AA sequence:ricco:30078.m002263" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2325t1" gene 3613789..3615247 /locus_tag="TCM_022289" /note="dbxref CacaoGD:Thecc1EG022289" mRNA join(3613789..3613806,3614213..3614525,3614944..3615247) /locus_tag="TCM_022289" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete" CDS join(3614261..3614525,3614944..3614954) /locus_tag="TCM_022289" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07956.1" /translation="MIQALKRVLTFDSWSPRRHVVFPKVSIRKERSLHYLGTDAANDL TSPSMVKNPPRAGMSLLGAPPGPADLRSTSAFLSPNFPAKLLLKVFE" CDS 3616757..3618592 /locus_tag="TCM_022288" /note="dbxref ricco:30078.m002263; paralog of Thecc1EG043319t1" /codon_start=1 /product="Major facilitator superfamily protein" /protein_id="EOY07955.1" /db_xref="TAIR:AT2G39210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HKC4" /translation="MAADHFSGVGCAWREMQSFGLNLIIGRWFMVFASLLIMSVSGAT YMFGLYSTVIKSSLGYDQTTLNLLSFSKDLGGNVGVLSGLINEVTPPWVVLLIGSVMN FFGYFMIWLAVTGRTAKPHVWQMCVYICLGANSQAFANTGALVTCVKNFPESRGSVLG LLKSYVGLSGAILTQLYHAFYGENSKSLILLIAWLPAAVSFVFLRTIRIIKIVRQTNE LRVFYNMFYISLALAGFLMVLIVIQNRLSFNRIEYVGSASLVTLLLLFPLTVVVREDF KIWRRKKQALNDVSQMKVVTENPPTVELAPQTMAVESLQPQPAGDPKSPDQKHVACME NIFKPPDRGEDYTILQALFSIDMLILFIATTCGVGGTLTAIDNLGQIGNSLGYPSRSI TTFVSLVSIWNYLGRAVAGFFSEYLLTKYKIPRPLLFTSVILFSCVGHLLIAFAVPNS LYFASVIIGFCFGAQWPLMYAIISEIFGLKYYSTLYNFGAVASPVGSYILNVRVAGHL YDKEALKQMKALGRTRKPGEDLTCTGGQCYRMAFIIIIATTLFGFLVSCILVLRTRKF YKSDIYKKFREEAEAAETDMASTSKQVEPKAPTDAGTTTATTSAN" gene 3624773..3628630 /locus_tag="TCM_022290" /note="dbxref CacaoGD:Thecc1EG022290" mRNA join(3624773..3624858,3624953..3626264,3627600..3628630) /locus_tag="TCM_022290" /product="Phosphatase 2A regulatory B subunit family protein, ALPHA" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g20870.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002146t1" /inference="similar to AA sequence:ricco:30078.m002261" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc574t1" CDS join(3625098..3626264,3627600..3627923) /locus_tag="TCM_022290" /note="dbxref ricco:30078.m002261; paralog of Thecc1EG002146t1" /codon_start=1 /product="Phosphatase 2A regulatory B subunit family protein, ALPHA" /protein_id="EOY07957.1" /db_xref="TAIR:AT5G03470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04375" /translation="MLKKIMKGGHRKPSKSDSTDPSLYGFGPPGSRNPGSAPTPNVVV NHASRAGPYTPGPNSAVPVVPPPMGTVEPLPLFRDVPVSERQNLFMRKLQICCFQFDF SDTLKSVREKEIKRQTLLELVDFIQSGSGKITEMCQEEMIKMVAINIFRCLPPASHEN TGQEATDPEEEEPYLEPSWPHLQLVYELLLRYVVSSDTDTKVAKRYIDHSFVLKLLDL FDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIYETERHSGIGELLEIL GSIINGFALPMKEEHKLFLVRALIPLHKPKPIAVYHQQLSYCITQFVEKDYKLADTVI RGLLKYWPLTNCQKEVLFLGELEEVLEATQSAEFQRCMVPLFRQIARCLNSSHFQVAE RALFLWNNEHIVSLIAQNRQVVLPIIFEAMERNIQSHWNQAVHGLTVNVRKMFMEMDA ELFDECQRQFAEKEARAREVEEQREMTWKKLADVAAQRGGDDMVTA" mobile_element complement(3628890..3628906) /note="source:CACAO_M_E35674_F13_scaffold_5 6929 6942" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3628907..3631671 /note="source:CACAO_M_S_E52029_F305_scaffold_5 1 2765" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3631619..3631682) /note="source:INTACT406_F208_scaffold_3-int 6365 6425" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 3631811..3635376 /locus_tag="TCM_022291" /note="dbxref CacaoGD:Thecc1EG022291" mRNA join(3631811..3632129,3632495..3632572,3632640..3632925, 3633026..3633283,3633374..3633506,3633591..3633784, 3634235..3634845,3635096..3635376) /locus_tag="TCM_022291" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(3631837..3632129,3632495..3632572,3632640..3632925, 3633026..3633283,3633374..3633506,3633591..3633784, 3634235..3634744) /locus_tag="TCM_022291" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07958.1" /translation="MAAGEKPPIIPSIREPFWYKDRSVVSFFEDEIIALTQPFKHSMV GKFSRMPRLNEIRIVFKGIGLVGAYEIHWLDYKHILIHFSKDHDLNRLWMRQAWAQRF NMLGDGTQDGEIGLNKTEIPRERKKNRFNSNEALKIEYEWLVIGKAGKSGAKDSQGVE IVSKEGGNDLMKLSNRFGTFGALEVDEQIDHAKQARIERVNSTMLIPEKKFQIKKNSA RKCETVGSLRASPTSHGKRGVIGTQVVRRNEGLPTTVIDEEFPTVVNFDKGSTHARAW DNAKNDYGSFVSMKILGTVTTSNGQWRMLDRTQSNGNEPFSAQVYQSVERVEGSGEHI PELGAELSQDGFCKLAASTAACTHGMMEKTNHAELEVHPMVLCRRKSNSAISVGHTIS SSFNEAVGEEGKDGMQDNDSISREERLYGAIPYEGSMEDFVAALLDCGLVDRGFESNP YTWTNSHMFQRLDRVVYNHQWLEYLTITRVQHLNRDGSDHCLLLVSCSKSLEKSPSSF RFLHAWVQHHDFKKFVEANWKLPIHDKGMKAFWRKQLRLKHNLKWWNKAVFGDIFHNL KEVEKGAEVNELMFQQE" mobile_element complement(3636941..3638572) /note="source:CACAO_M_E84368_F4_scaffold_10 4507 6140" /mobile_element_type="retrotransposon:LTR/Copia" gene <3640072..3642857 /locus_tag="TCM_022292" /note="dbxref CacaoGD:Thecc1EG022292" mRNA join(3640072..3640321,3640434..3640544,3641326..3641394, 3642395..3642857) /locus_tag="TCM_022292" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s12410.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033669001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2365t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2365t3" mRNA join(<3640072..3640321,3640434..3640544,3642395..3642857) /locus_tag="TCM_022292" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s12410.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033669001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2365t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2365t3" CDS join(<3640073..3640321,3640434..3640544,3642395..3642445) /locus_tag="TCM_022292" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY07960.1" /db_xref="Phytozome:GSVIVT01033669001" /db_xref="TAIR:AT2G36835.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTH2" /translation="KPLLQKAIHSFCVFPSNPNPKTYYLFRCQQRKLEGMSRKGGAPL QKDAPWRASAGKFIPKIHHSPVLRLAQTPHSNYALAVMKHPDPIGSGLATEAIVEAAG PECIVPGQITPVRLLGVKFMDDAVNLMNKSFIDR" CDS join(3640178..3640321,3640434..3640544,3641326..3641394, 3642395..3642445) /locus_tag="TCM_022292" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY07959.1" /db_xref="Phytozome:GSVIVT01033669001" /db_xref="TAIR:AT2G36835.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTH2" /translation="MSRKGGAPLQKDAPWRASAGKFIPKIHHSPVLRLAQTPHSNYAL AVMKHPDPIGSGLATEAIVEAAGPECIVPGQITPVRLLGVKVWPIEVNLKFLEPVGKE LKLLGKFMDDAVNLMNKSFIDR" gene 3643942..3645160 /locus_tag="TCM_022293" /note="dbxref CacaoGD:Thecc1EG022293" mRNA join(3643942..3644138,3644228..3644357,3644430..3644530, 3644617..3645160) /locus_tag="TCM_022293" /product="Myb domain protein 27, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033670001" /inference="similar to AA sequence:frave:gene09683" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2443t1" CDS join(3644000..3644138,3644228..3644357,3644430..3644530, 3644617..3644957) /locus_tag="TCM_022293" /note="dbxref frave:gene09683" /codon_start=1 /product="Myb domain protein 27, putative" /protein_id="EOY07961.1" /db_xref="TAIR:AT3G53200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BED7" /translation="MAYETAAAMHGESLRKGPWHEDEDERLITFVKLLGSRRWDYVAR VSGLKRSGKSCRLRWLNYLRPNIKHGQISAEEEKIILQLHERWGNKWSMIARRLPGRT DNEIKNYWRTHLRKKALIQEQENFQFGGDNGKQLFLFQEDGSSAQNYNGESYKPCKDI LDTENSCYDVVGLSDFTLTSSPYQTRLSDWIPEFPSDQSEIKSQHCNSSDSCYCYPAW ISEENDLWGCSGSLWNME" gene complement(3646705..3651227) /locus_tag="TCM_022294" /note="dbxref CacaoGD:Thecc1EG022294" mRNA complement(join(3646705..3647183,3647632..3647840, 3648383..3648825,3649403..3649863,3650721..3650938)) /locus_tag="TCM_022294" /product="Pectin lyase-like superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g34260.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043329t2" /inference="similar to AA sequence:frave:gene09684" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc119t5; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13458t1" mRNA complement(join(3646705..3647183,3647632..3647840, 3648383..3648825,3649403..3649863,3650431..3650938)) /locus_tag="TCM_022294" /product="Pectin lyase-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g34260.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043329t2" /inference="similar to AA sequence:frave:gene09684" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc119t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13458t1" mRNA complement(join(3646798..3647183,3647632..3647840, 3648383..3648825,3649403..3649863,3650204..3650353, 3650431..3650600,3650721..3651227)) /locus_tag="TCM_022294" /product="Pectin lyase-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g34260.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043329t3" /inference="similar to AA sequence:frave:gene09684" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13458t1" CDS complement(join(3646967..3647183,3647632..3647840, 3648383..3648825,3649403..3649863,3650431..3650561)) /locus_tag="TCM_022294" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene09684; paralog of Thecc1EG043329t2" /codon_start=1 /product="Pectin lyase-like superfamily protein isoform 2" /protein_id="EOY07963.1" /db_xref="TAIR:AT3G53190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E7BTN3" /translation="MLPSNYIALFFLLSSFAPLGKATFNLTFPTPHPNPDEVVQDVQR RVNASMSRRQTLQISQKDQSNCLTGNPIDDCWKCDPDWSNNRQRLADCAIGFGQYALG GKGGEYYIVTDSSDDDAVTPKPGTLRYAVIQTEPLWIVFPSNMLIKLKQELIFNSYKT LDGRGANVHIVGGGCITLQYISNVIIHNIHIHHCVQSGEANVRSSPTHYGWRTESDGD GISIFGSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNFFSHHNEVMLLGHSDDYKP DSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNR YTAPSNSNAKEVTKRVETAEGDWRDWNWRSEGDIMVNGAFFVASGEGVEVKYEKAYSV EPKSAVLIDQLTMHSGVLGVGGRDNNLGKWSSGANGGGAGFSSGEDDGDEDYSDEMSG SNVPLSPPFSNPALFSLFNAMSSFLLLYTIPLSSML" CDS complement(join(3646967..3647183,3647632..3647840, 3648383..3648825,3649403..3649863,3650204..3650353, 3650431..3650561)) /locus_tag="TCM_022294" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene09684; paralog of Thecc1EG043329t3" /codon_start=1 /product="Pectin lyase-like superfamily protein isoform 1" /protein_id="EOY07962.1" /db_xref="TAIR:AT3G53190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E7BTN3" /translation="MLPSNYIALFFLLSSFAPLGKATFNLTFPTPHPNPDEVVQDVQS QAYVRSKNASFLSLCDDLSVLHFECLLRLLRLQTVVLGSVNIFIPTQGTRRVNASMSR RQTLQISQKDQSNCLTGNPIDDCWKCDPDWSNNRQRLADCAIGFGQYALGGKGGEYYI VTDSSDDDAVTPKPGTLRYAVIQTEPLWIVFPSNMLIKLKQELIFNSYKTLDGRGANV HIVGGGCITLQYISNVIIHNIHIHHCVQSGEANVRSSPTHYGWRTESDGDGISIFGSK DLWIDHCSLSHCKDGLIDAVMGSTGITISNNFFSHHNEVMLLGHSDDYKPDSGMQVTI AFNHFGEKLVQRMPRCRRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPSNSN AKEVTKRVETAEGDWRDWNWRSEGDIMVNGAFFVASGEGVEVKYEKAYSVEPKSAVLI DQLTMHSGVLGVGGRDNNLGKWSSGANGGGAGFSSGEDDGDEDYSDEMSGSNVPLSPP FSNPALFSLFNAMSSFLLLYTIPLSSML" CDS complement(join(3646967..3647183,3647632..3647840, 3648383..3648825,3649403..3649847)) /locus_tag="TCM_022294" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene09684; paralog of Thecc1EG043329t2" /codon_start=1 /product="Pectin lyase-like superfamily protein isoform 3" /protein_id="EOY07964.1" /db_xref="TAIR:AT3G53190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E7BTN3" /translation="MSRRQTLQISQKDQSNCLTGNPIDDCWKCDPDWSNNRQRLADCA IGFGQYALGGKGGEYYIVTDSSDDDAVTPKPGTLRYAVIQTEPLWIVFPSNMLIKLKQ ELIFNSYKTLDGRGANVHIVGGGCITLQYISNVIIHNIHIHHCVQSGEANVRSSPTHY GWRTESDGDGISIFGSKDLWIDHCSLSHCKDGLIDAVMGSTGITISNNFFSHHNEVML LGHSDDYKPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTQWEMYAIGGSGN PTINSQGNRYTAPSNSNAKEVTKRVETAEGDWRDWNWRSEGDIMVNGAFFVASGEGVE VKYEKAYSVEPKSAVLIDQLTMHSGVLGVGGRDNNLGKWSSGANGGGAGFSSGEDDGD EDYSDEMSGSNVPLSPPFSNPALFSLFNAMSSFLLLYTIPLSSML" mobile_element complement(3652674..3652852) /note="source:scaffold_7_CACTA_0795 2880 3061" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3658204..3658900) /note="source:CACAO_M_S_E5285_F300_scaffold_1 17252 17968" /mobile_element_type="retrotransposon:LTR/Copia" gene 3661893..3664492 /locus_tag="TCM_022295" /note="dbxref CacaoGD:Thecc1EG022295" mRNA join(3661893..3662232,3662332..3662549,3663330..3663439, 3663575..3663689,3663804..3664113,3664224..3664492) /locus_tag="TCM_022295" /product="Alpha carbonic anhydrase 7 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033673001.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042096t1" /inference="similar to AA sequence:ricco:30078.m002256" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:PASA:2:TSA:puevd3b021582t1a2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13455t1" mRNA join(3661893..3662232,3662332..3662549,3663330..3663439, 3663575..3663689,3663804..3663968,3664060..3664113, 3664224..3664337) /locus_tag="TCM_022295" /product="Alpha carbonic anhydrase 7 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033673001.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042096t1" /inference="similar to AA sequence:ricco:30078.m002256" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13455t1" CDS join(3662136..3662232,3662332..3662549,3663330..3663439, 3663575..3663689,3663804..3663968,3664060..3664113, 3664224..3664313) /locus_tag="TCM_022295" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30078.m002256; paralog of Thecc1EG042096t1" /codon_start=1 /product="Alpha carbonic anhydrase 7 isoform 1" /protein_id="EOY07965.1" /db_xref="TAIR:AT1G08080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTH5" /translation="MKHQSKPIFVSVFLIFAVLFLSYSASVSAQEVEDEREFDYLENS GKGPSQWGDLKKEWVACKNGGLQSPIDMSSLRVKVINKSGELKKRYKPCHAIVKNRGH DISLQWPNYDAGSIKTNGTEYFLQQAHWHSPSEHTINGRRYALELHMVHQCKDPNVKN NLAVVGLLYKFGAPDAFLSKLIGNITSMNDHVQERYMGLIDPSLIKMGGKKYYRYMGS LTVPPCTEGVIWTMNKKIRTVSRDQVRALRIAVHDYAEANARPVQPLNRREIELYGRN PGDVPN" CDS join(3662136..3662232,3662332..3662549,3663330..3663439, 3663575..3663689,3663804..3663992) /locus_tag="TCM_022295" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30078.m002256; paralog of Thecc1EG042096t1" /codon_start=1 /product="Alpha carbonic anhydrase 7 isoform 2" /protein_id="EOY07966.1" /db_xref="TAIR:AT2G28210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTH5" /translation="MKHQSKPIFVSVFLIFAVLFLSYSASVSAQEVEDEREFDYLENS GKGPSQWGDLKKEWVACKNGGLQSPIDMSSLRVKVINKSGELKKRYKPCHAIVKNRGH DISLQWPNYDAGSIKTNGTEYFLQQAHWHSPSEHTINGRRYALELHMVHQCKDPNVKN NLAVVGLLYKFGAPDAFLSKLIGNITSMNDHVQERYMGLIDPSLIKMGGKKYYRYMGS LTVPPCTEGVIWTMNKKVSKSSHP" gene complement(3665217..3668063) /locus_tag="TCM_022296" /note="dbxref CacaoGD:Thecc1EG022296" mRNA complement(join(3665217..3665662,3665751..3665967, 3666095..3666186,3666273..3666355,3666455..3666495, 3666578..3666621,3666714..3666791,3666920..3666952, 3667077..3667136,3667231..3667318,3667403..3667516, 3667629..3667891)) /locus_tag="TCM_022296" /product="PGPD14 isoform 3" /inference="alignment:exonerate- protein:2:ricco:30078.m002255" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042163t3" /inference="similar to AA sequence:ricco:30078.m002255" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b021583t1a3; inference alignment:Newbler:10:TSA:cgbaP1_g03623t00001" mRNA complement(join(3665243..3665662,3665751..3665792, 3665898..3665967,3666095..3666186,3666273..3666355, 3666455..3666495,3666578..3666621,3666714..3666791, 3666920..3666952,3667077..3667136,3667231..3667318, 3667403..3667516,3667629..3667702)) /locus_tag="TCM_022296" /product="PGPD14 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30078.m002255" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042163t3" /inference="similar to AA sequence:ricco:30078.m002255" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03623t00001; inference alignment:Newbler:10:TSA:cgbaP1_g03623t00001" mRNA complement(join(3665244..3665662,3665751..3665792, 3665898..3665967,3666095..3666186,3666273..3666355, 3666455..3666495,3666578..3666621,3666714..3666791, 3666920..3666952,3667077..3667136,3667231..3667318, 3667403..3667516,3667994..3668063)) /locus_tag="TCM_022296" /product="PGPD14 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30078.m002255" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042163t3" /inference="similar to AA sequence:ricco:30078.m002255" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaL_g05702t00001; alternateUTRof:Thecc1EG022296t1; inference alignment:Newbler:10:TSA:cgbaP1_g03623t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1048t8" CDS complement(join(3665510..3665662,3665751..3665792, 3665898..3665967,3666095..3666186,3666273..3666355, 3666455..3666495,3666578..3666621,3666714..3666791, 3666920..3666952,3667077..3667136,3667231..3667318, 3667403..3667473)) /locus_tag="TCM_022296" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30078.m002255; paralog of Thecc1EG042163t3" /codon_start=1 /product="PGPD14 isoform 1" /protein_id="EOY07967.1" /db_xref="TAIR:AT5G22920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZTM6" /translation="MESSFEPKMSNSSSIMENGYGEFGCSHYRRRCKIRAPCCDEIFD CRHCHNESKNSIEVNPLDRHEVPRHDIKRVICSLCDREQDVQQHCIYCGVCMGNYFCS KCNFFDDDVSKNQYHCDECGICRIGGEENFFHCNKCGCCYSTVLKNSHNCVEKAMHHN CAVCFEFLFDTTKDITVLPCGHTIHLECVKQMESHFRYSCPVCSKSYCDMSLVWERLD REVASTVMPQIYQNKMVWILCNDCGENSEVNFHIVAHKCLKCNSYNTRQTRGGAASCS SEIAEIVR" CDS complement(join(3665510..3665662,3665751..3665792, 3665898..3665967,3666095..3666186,3666273..3666355, 3666455..3666495,3666578..3666621,3666714..3666791, 3666920..3666952,3667077..3667136,3667231..3667318, 3667403..3667473)) /locus_tag="TCM_022296" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30078.m002255; paralog of Thecc1EG042163t3" /codon_start=1 /product="PGPD14 isoform 1" /protein_id="EOY07968.1" /db_xref="TAIR:AT5G22920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZTM6" /translation="MESSFEPKMSNSSSIMENGYGEFGCSHYRRRCKIRAPCCDEIFD CRHCHNESKNSIEVNPLDRHEVPRHDIKRVICSLCDREQDVQQHCIYCGVCMGNYFCS KCNFFDDDVSKNQYHCDECGICRIGGEENFFHCNKCGCCYSTVLKNSHNCVEKAMHHN CAVCFEFLFDTTKDITVLPCGHTIHLECVKQMESHFRYSCPVCSKSYCDMSLVWERLD REVASTVMPQIYQNKMVWILCNDCGENSEVNFHIVAHKCLKCNSYNTRQTRGGAASCS SEIAEIVR" CDS complement(join(3665856..3665967,3666095..3666186, 3666273..3666355,3666455..3666495,3666578..3666621, 3666714..3666791,3666920..3666952,3667077..3667136, 3667231..3667318,3667403..3667473)) /locus_tag="TCM_022296" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30078.m002255; paralog of Thecc1EG042163t3" /codon_start=1 /product="PGPD14 isoform 3" /protein_id="EOY07969.1" /db_xref="TAIR:AT5G22920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZTM6" /translation="MESSFEPKMSNSSSIMENGYGEFGCSHYRRRCKIRAPCCDEIFD CRHCHNESKNSIEVNPLDRHEVPRHDIKRVICSLCDREQDVQQHCIYCGVCMGNYFCS KCNFFDDDVSKNQYHCDECGICRIGGEENFFHCNKCGCCYSTVLKNSHNCVEKAMHHN CAVCFEFLFDTTKDITVLPCGHTIHLECVKQMESHFRYSCPVCSKSYCDMSLVWERLD REACLLYLRSTYFCF" gene complement(3671819..3673006) /locus_tag="TCM_022298" /note="dbxref CacaoGD:Thecc1EG022298" mRNA complement(join(3671819..3672373,3672482..3673006)) /locus_tag="TCM_022298" /product="Aquaporin TIP1,6" /inference="alignment:exonerate- protein:2:TAIR:AT2G36830.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042892t1" /inference="similar to AA sequence:TAIR:AT2G36830.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13524t1" CDS complement(join(3672002..3672373,3672482..3672865)) /locus_tag="TCM_022298" /note="paralog of Thecc1EG042892t1" /codon_start=1 /product="Aquaporin TIP1,6" /protein_id="EOY07970.1" /db_xref="TAIR:AT2G36830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D8FSK8" /translation="MPFRNIAVGRPEEAAHPDALKAALAEFISTLIFVFAGSGSSMAY NKLTDNGASTPAGLVAASLAYGFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLR GILYWIAQLLGSTVACLLLKFATNGLSIPAFGLSSGVGVWNAFVFEIVMTFGLVYTVY ATAVDPKKGSVGVIAPLAIGLIVGANILAGGAFEGASMNPAVSFGPALVSWTWKNHWV YWAGPLIGGGIAGLVYEFFFISHTHEQLPATDY" mobile_element 3678962..3679903 /note="source:CACAO_MITE_S250_scaffold_10 27 946" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(3680712..3680931) /note="source:scaffold_4_CACTA_0482 5901 6157" /mobile_element_type="transposon:TIR/CACTA" gene 3685003..3686283 /locus_tag="TCM_022299" /note="dbxref CacaoGD:Thecc1EG022299" mRNA 3685003..3686283 /locus_tag="TCM_022299" /product="Nucleic acid binding protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s10790.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043349t1" /inference="similar to AA sequence:ricco:30078.m002253" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g10645t00001" CDS 3685249..3686115 /locus_tag="TCM_022299" /note="dbxref ricco:30078.m002253; paralog of Thecc1EG043349t1" /codon_start=1 /product="Nucleic acid binding protein, putative" /protein_id="EOY07971.1" /db_xref="TAIR:AT2G28200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S0D6" /translation="MMMMEGQEEVVLCKDQLQIIKGKRTKRPRPLSPLTLLMASSTTS SGGESGGEGGRNSDDSRGLERAVASPTTSVDELTEISTEEEEDMANCLILLAQGQTRI KPSEPASLATTSKTGIYVHQCKTCNRCFSSFQALGGHRASHKKPKVNNEENKGLVFVR EDDDQFNNMNTALSLQITNKAVLCNSSKSKVHECSICGAEFSSGQALGGHMRRHRTFT NVPTTTATTALSVGTRSPESQESKKPRTVLQLDLNLPAPEDDHHRETKFSFASKEKLL VFSASSLVDCHY" gene 3687466..3692116 /locus_tag="TCM_022300" /note="dbxref CacaoGD:Thecc1EG022300" mRNA join(3687466..3687611,3689765..3690013,3690789..3690880, 3690981..3691059,3691144..3691230,3691593..>3691616) /locus_tag="TCM_022300" /product="Ankyrin repeat family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033679001" /inference="similar to AA sequence:Phytozome:Glyma10g06770.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc148t7; inference alignment:Newbler:10:TSA:cgbaP1_g05352t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc148t1" mobile_element complement(3688721..3688851) /note="source:scaffold_9_CACTA_0946 17884 18002" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3688852..3688937) /note="source:scaffold_5_CACTA_0612 6263 6348" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3689252..3689322) /note="source:scaffold_5_CACTA_0612 13247 13319" /mobile_element_type="transposon:TIR/CACTA" mRNA join(3689731..3690013,3690789..3690880,3690981..3691059, 3691144..3691238,3691593..3691688,3691761..3692115) /locus_tag="TCM_022300" /product="Ankyrin repeat family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033679001" /inference="similar to AA sequence:Phytozome:GSVIVT01033679001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g11362t00001; alternateUTRof:Thecc1EG022300t1; inference alignment:Newbler:10:TSA:cgbaP1_g05352t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc148t1" mRNA join(3689796..3690013,3690789..3690880,3690981..3691059, 3691144..3691238,3691593..3691688,3691761..3692116) /locus_tag="TCM_022300" /product="Ankyrin repeat family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033679001" /inference="similar to AA sequence:Phytozome:GSVIVT01033679001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05352t00001; inference alignment:Newbler:10:TSA:cgbaP1_g05352t00001" CDS join(3689836..3690013,3690789..3690880,3690981..3691059, 3691144..3691238,3691593..3691688,3691761..3691841) /locus_tag="TCM_022300" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Ankyrin repeat family protein isoform 1" /protein_id="EOY07972.1" /db_xref="Phytozome:GSVIVT01033679001" /db_xref="TAIR:AT3G09890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTH9" /translation="MAVPGRRNGLMEEDEHDDENALFEENGLEMDLEADTPPHLRDLA AAAQLGDLDALRLALDNLNGSIDEPVEDGDTALHLACLYGYLPCVQLLLERGANFEAK DEDGAVPLHDACAGGFIEIVQLLLGTATNAGCLKRMLDTVDAEGDTPLHHAVRGEHVD VIRLLLANGASPTKANIYGKIPRELADPETEAWRVFDAAAGAETSQ" CDS join(3689836..3690013,3690789..3690880,3690981..3691059, 3691144..3691238,3691593..3691688,3691761..3691841) /locus_tag="TCM_022300" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Ankyrin repeat family protein isoform 1" /protein_id="EOY07973.1" /db_xref="Phytozome:GSVIVT01033679001" /db_xref="TAIR:AT3G09890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTH9" /translation="MAVPGRRNGLMEEDEHDDENALFEENGLEMDLEADTPPHLRDLA AAAQLGDLDALRLALDNLNGSIDEPVEDGDTALHLACLYGYLPCVQLLLERGANFEAK DEDGAVPLHDACAGGFIEIVQLLLGTATNAGCLKRMLDTVDAEGDTPLHHAVRGEHVD VIRLLLANGASPTKANIYGKIPRELADPETEAWRVFDAAAGAETSQ" CDS join(3689836..3690013,3690789..3690880,3690981..3691059, 3691144..3691230,3691593..>3691615) /locus_tag="TCM_022300" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Ankyrin repeat family protein isoform 3" /protein_id="EOY07974.1" /db_xref="Phytozome:Glyma10g06770.1" /db_xref="TAIR:AT3G09890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTH9" /translation="MAVPGRRNGLMEEDEHDDENALFEENGLEMDLEADTPPHLRDLA AAAQLGDLDALRLALDNLNGSIDEPVEDGDTALHLACLYGYLPCVQLLLERGANFEAK DEDGAVPLHDACAGGFIEIVQLLLGTATNAGCLKRMLDTVDAEASSSCSTR" mobile_element complement(3693347..3693467) /note="source:scaffold_3_CACTA_0396 884 999" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3693367..3693462 /note="source:scaffold_9_CACTA_0936 328 426" /mobile_element_type="transposon:TIR/CACTA" gene complement(3694081..3697795) /locus_tag="TCM_022301" /note="dbxref CacaoGD:Thecc1EG022301" mRNA complement(join(3694081..3694446,3694829..3694957, 3695857..3695978,3696722..3696787,3697483..3697551, 3697651..3697795)) /locus_tag="TCM_022301" /product="Rab gtpase c2a, alpha,atrab,atrab18b,atrabc2a,rabc2a" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033681001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043355t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033681001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaB_g12189t00001" CDS complement(join(3694336..3694446,3694829..3694957, 3695857..3695978,3696722..3696787,3697483..3697551, 3697651..3697792)) /locus_tag="TCM_022301" /note="paralog of Thecc1EG043355t1" /codon_start=1 /product="Rab gtpase c2a, alpha,atrab,atrab18b,atrabc2a,rabc2a" /protein_id="EOY07975.1" /db_xref="Phytozome:GSVIVT01033681001" /db_xref="TAIR:AT5G03530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q40206" /translation="MGSSSGQSSGSYDLSFKILLIGDSGVGKSSLLVSFISASVGDLA PTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETF TNLSDVWAKDVELYSTNQDCVKMLVGNKVDRDSERAVSRDEGIALAKELGCMFLECSA KTRENVEQCFEELALKIMEVPSLLEEGSAVGKRNILKQKPEYHAPPGGSCCS" gene 3700159..3702845 /locus_tag="TCM_022302" /note="dbxref CacaoGD:Thecc1EG022302" mRNA join(3700159..3700438,3700529..3700698,3701301..3701377, 3701488..3701553,3701817..3701891,3701974..3702048, 3702299..3702845) /locus_tag="TCM_022302" /product="Hydroxyproline-rich glycoprotein family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s12310.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033687001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03593t00001" CDS join(3700287..3700438,3700529..3700698,3701301..3701377, 3701488..3701553,3701817..3701891,3701974..3702048, 3702299..3702700) /locus_tag="TCM_022302" /codon_start=1 /product="Hydroxyproline-rich glycoprotein family protein" /protein_id="EOY07976.1" /db_xref="Phytozome:GSVIVT01033687001" /db_xref="TAIR:AT2G32600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10NP6" /translation="MDRDWGSKPGSGGAASAQTEAMDRRERLRRLALETIDLAKDPYF MRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKV SVRKTVKIGRPGYRVTKQYDPETKQRSLLFQIEYPEIEDNTKPRHRVMSSYEQRVQPF DRRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQVYFKTKPLEAN KPQPPPPANGTAAPGAPPRPLPPPPHAPPPPPPPPQGLPNPPRAPPPPVPGSLPPPPP PMGNGPRPMPPGGTPMAPPPPPGGSGTMANFTPRPPTIPPPQGFPGQQMQGHPPPPPP NMGQ" gene complement(3703097..3710626) /locus_tag="TCM_022303" /note="dbxref CacaoGD:Thecc1EG022303" mRNA complement(join(3703097..3704019,3704464..3704623, 3705282..3705430,3705749..3705936,3706172..3706282, 3706569..3706734,3707482..3707649,3708168..3709555, 3710420..3710444,3710572..3710626)) /locus_tag="TCM_022303" /product="Phosphatidyl inositol monophosphate 5 kinase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s12300.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006386t1" /inference="similar to AA sequence:Phytozome:Glyma10g06800.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc406t1; alternateUTRof:Thecc1EG022303t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc406t6" mRNA complement(join(3703097..3704019,3704464..3704623, 3705282..3705430,3705749..3705936,3706172..3706282, 3706569..3706734,3707482..3707649,3708168..3709561, 3710236..3710489)) /locus_tag="TCM_022303" /product="Phosphatidyl inositol monophosphate 5 kinase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s12300.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006386t1" /inference="similar to AA sequence:Phytozome:Glyma10g06800.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc406t9; alternateUTRof:Thecc1EG022303t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc406t6" mRNA complement(join(3703097..3704019,3704464..3704623, 3705282..3705430,3705749..3705936,3706172..3706282, 3706569..3706734,3707482..3707649,3708168..3709561, 3710063..3710136,3710234..3710489)) /locus_tag="TCM_022303" /product="Phosphatidyl inositol monophosphate 5 kinase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s12300.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006386t1" /inference="similar to AA sequence:Phytozome:Glyma10g06800.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc406t6; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc406t6" CDS complement(join(3703746..3704019,3704464..3704623, 3705282..3705430,3705749..3705936,3706172..3706282, 3706569..3706734,3707482..3707649,3708168..3709429)) /locus_tag="TCM_022303" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG006386t1" /codon_start=1 /product="Phosphatidyl inositol monophosphate 5 kinase isoform 1" /protein_id="EOY07977.1" /db_xref="Phytozome:Glyma10g06800.1" /db_xref="TAIR:AT3G09920.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L850" /translation="MSGPVATVENVEGALSCAERTKSLDAITDIENGSILTNGDAVHS SETAGFRVGELLLPNGDSYSGSLLGNVPEGRGKYVWQGGCVYEGEWSCGMRHGTGKIQ WPTGTVYDGEFSGGYMHGTGTYIGSNKLTYKGRWKLNLKHGLGYQVYPNGDVFEASWI QGTTEGPGKYTWANGNVYLGNMKGGKMSGKGTLTWTNGDTFEGSWLNGMMHGFGVYTW SDGGFYVGTWTRGLKDGKGSFYPKSSRLPALQEVYLNALRKRGLLPDLRKQVHAHIHH ASSIDMGSIKVGGNRVSHRNSNKLSEGNLLNLEQSRNRNVSLERRWSLEVSIEKVIGH DSSFELSDSFTEGGEKGSETNAPILEREYMQGVLISELVLNNSFSPSSRRAKRRQKKL AKDIKRPGETIIKGHRSYDLMLSLQLGIRYTVGKITPVQRREVRASDFGPRASFWMNF PKEGSQLTPPHQSEDFKWKDYCPMVFRNLREMFKIDAADYMMSICGNDALRELSSPGK SGSIFFLSQDDRFMIKTLRKSEVKVLLRMLPNYHHHVRSYENTLITKFFGLHRIKPSS GQKFRFVVMGNMFCTELRIHRRFDLKGSSLGRSADNVEIDENTTLKDLDLNYCFYLEP SWQEALLRQIEIDSKFLEAQRIMDYSLLLGVHYRAPQHLRSLMSYNTADGLGSVAEEE EDEISNYPQGLVLVPRGTDDNSVVAGSHIRGRRLRASAAGDEEVDLLLPGTARLQIQL GVNMPARAEQIPGKEENTFHEAYDVVLYLGIIDILQEYNMTKKIEHAYKSLQFDSVSI SAVDPTFYSQRFLNFIQKVFPPNSTEN" CDS complement(join(3703746..3704019,3704464..3704623, 3705282..3705430,3705749..3705936,3706172..3706282, 3706569..3706734,3707482..3707649,3708168..3709429)) /locus_tag="TCM_022303" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG006386t1" /codon_start=1 /product="Phosphatidyl inositol monophosphate 5 kinase isoform 1" /protein_id="EOY07978.1" /db_xref="Phytozome:Glyma10g06800.1" /db_xref="TAIR:AT3G09920.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L850" /translation="MSGPVATVENVEGALSCAERTKSLDAITDIENGSILTNGDAVHS SETAGFRVGELLLPNGDSYSGSLLGNVPEGRGKYVWQGGCVYEGEWSCGMRHGTGKIQ WPTGTVYDGEFSGGYMHGTGTYIGSNKLTYKGRWKLNLKHGLGYQVYPNGDVFEASWI QGTTEGPGKYTWANGNVYLGNMKGGKMSGKGTLTWTNGDTFEGSWLNGMMHGFGVYTW SDGGFYVGTWTRGLKDGKGSFYPKSSRLPALQEVYLNALRKRGLLPDLRKQVHAHIHH ASSIDMGSIKVGGNRVSHRNSNKLSEGNLLNLEQSRNRNVSLERRWSLEVSIEKVIGH DSSFELSDSFTEGGEKGSETNAPILEREYMQGVLISELVLNNSFSPSSRRAKRRQKKL AKDIKRPGETIIKGHRSYDLMLSLQLGIRYTVGKITPVQRREVRASDFGPRASFWMNF PKEGSQLTPPHQSEDFKWKDYCPMVFRNLREMFKIDAADYMMSICGNDALRELSSPGK SGSIFFLSQDDRFMIKTLRKSEVKVLLRMLPNYHHHVRSYENTLITKFFGLHRIKPSS GQKFRFVVMGNMFCTELRIHRRFDLKGSSLGRSADNVEIDENTTLKDLDLNYCFYLEP SWQEALLRQIEIDSKFLEAQRIMDYSLLLGVHYRAPQHLRSLMSYNTADGLGSVAEEE EDEISNYPQGLVLVPRGTDDNSVVAGSHIRGRRLRASAAGDEEVDLLLPGTARLQIQL GVNMPARAEQIPGKEENTFHEAYDVVLYLGIIDILQEYNMTKKIEHAYKSLQFDSVSI SAVDPTFYSQRFLNFIQKVFPPNSTEN" CDS complement(join(3703746..3704019,3704464..3704623, 3705282..3705430,3705749..3705936,3706172..3706282, 3706569..3706734,3707482..3707649,3708168..3709429)) /locus_tag="TCM_022303" /note="encoded by transcript variant 6; alternatively spliced; paralog of Thecc1EG006386t1" /codon_start=1 /product="Phosphatidyl inositol monophosphate 5 kinase isoform 1" /protein_id="EOY07982.1" /db_xref="Phytozome:Glyma10g06800.1" /db_xref="TAIR:AT3G09920.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L850" /translation="MSGPVATVENVEGALSCAERTKSLDAITDIENGSILTNGDAVHS SETAGFRVGELLLPNGDSYSGSLLGNVPEGRGKYVWQGGCVYEGEWSCGMRHGTGKIQ WPTGTVYDGEFSGGYMHGTGTYIGSNKLTYKGRWKLNLKHGLGYQVYPNGDVFEASWI QGTTEGPGKYTWANGNVYLGNMKGGKMSGKGTLTWTNGDTFEGSWLNGMMHGFGVYTW SDGGFYVGTWTRGLKDGKGSFYPKSSRLPALQEVYLNALRKRGLLPDLRKQVHAHIHH ASSIDMGSIKVGGNRVSHRNSNKLSEGNLLNLEQSRNRNVSLERRWSLEVSIEKVIGH DSSFELSDSFTEGGEKGSETNAPILEREYMQGVLISELVLNNSFSPSSRRAKRRQKKL AKDIKRPGETIIKGHRSYDLMLSLQLGIRYTVGKITPVQRREVRASDFGPRASFWMNF PKEGSQLTPPHQSEDFKWKDYCPMVFRNLREMFKIDAADYMMSICGNDALRELSSPGK SGSIFFLSQDDRFMIKTLRKSEVKVLLRMLPNYHHHVRSYENTLITKFFGLHRIKPSS GQKFRFVVMGNMFCTELRIHRRFDLKGSSLGRSADNVEIDENTTLKDLDLNYCFYLEP SWQEALLRQIEIDSKFLEAQRIMDYSLLLGVHYRAPQHLRSLMSYNTADGLGSVAEEE EDEISNYPQGLVLVPRGTDDNSVVAGSHIRGRRLRASAAGDEEVDLLLPGTARLQIQL GVNMPARAEQIPGKEENTFHEAYDVVLYLGIIDILQEYNMTKKIEHAYKSLQFDSVSI SAVDPTFYSQRFLNFIQKVFPPNSTEN" mRNA complement(join(3704600..3704755,3705282..3705430, 3705749..3705936,3706172..3706282,3706569..3706734, 3707482..3707649,3708168..3709561,3710236..3710489)) /locus_tag="TCM_022303" /product="Phosphatidyl inositol monophosphate 5 kinase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s12300.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006386t1" /inference="similar to AA sequence:Phytozome:Glyma10g06800.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc406t4; alternateUTRof:Thecc1EG022303t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc406t6" mRNA complement(join(3704600..3705180,3705282..3705430, 3705749..3705936,3706172..3706282,3706569..3706734, 3707482..3707649,3708168..3709561,3710236..3710489)) /locus_tag="TCM_022303" /product="Phosphatidyl inositol monophosphate 5 kinase isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s12300.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006386t1" /inference="similar to AA sequence:Phytozome:Glyma10g06800.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc406t8; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc406t6" mRNA complement(join(3704600..3704755,3705282..3705430, 3705749..3705936,3706172..3706282,3706569..3706734, 3707482..3707649,3708168..3709561,3710063..3710135, 3710236..3710489)) /locus_tag="TCM_022303" /product="Phosphatidyl inositol monophosphate 5 kinase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s12300.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006386t1" /inference="similar to AA sequence:Phytozome:Glyma10g06800.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc323t6_C1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc406t6" CDS complement(join(3704709..3704755,3705282..3705430, 3705749..3705936,3706172..3706282,3706569..3706734, 3707482..3707649,3708168..3709429)) /locus_tag="TCM_022303" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG006386t1" /codon_start=1 /product="Phosphatidyl inositol monophosphate 5 kinase isoform 3" /protein_id="EOY07979.1" /db_xref="Phytozome:Glyma10g06800.1" /db_xref="TAIR:AT3G09920.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L850" /translation="MSGPVATVENVEGALSCAERTKSLDAITDIENGSILTNGDAVHS SETAGFRVGELLLPNGDSYSGSLLGNVPEGRGKYVWQGGCVYEGEWSCGMRHGTGKIQ WPTGTVYDGEFSGGYMHGTGTYIGSNKLTYKGRWKLNLKHGLGYQVYPNGDVFEASWI QGTTEGPGKYTWANGNVYLGNMKGGKMSGKGTLTWTNGDTFEGSWLNGMMHGFGVYTW SDGGFYVGTWTRGLKDGKGSFYPKSSRLPALQEVYLNALRKRGLLPDLRKQVHAHIHH ASSIDMGSIKVGGNRVSHRNSNKLSEGNLLNLEQSRNRNVSLERRWSLEVSIEKVIGH DSSFELSDSFTEGGEKGSETNAPILEREYMQGVLISELVLNNSFSPSSRRAKRRQKKL AKDIKRPGETIIKGHRSYDLMLSLQLGIRYTVGKITPVQRREVRASDFGPRASFWMNF PKEGSQLTPPHQSEDFKWKDYCPMVFRNLREMFKIDAADYMMSICGNDALRELSSPGK SGSIFFLSQDDRFMIKTLRKSEVKVLLRMLPNYHHHVRSYENTLITKFFGLHRIKPSS GQKFRFVVMGNMFCTELRIHRRFDLKGSSLGRSADNVEIDENTTLKDLDLNYCFYLEP SWQEALLRQIEIDSKFLEAQRIMDYSLLLGVHYRAPQHLRSLMSYNTADGLGSVAEEG SSHLWNLVYAIKII" CDS complement(join(3704709..3704755,3705282..3705430, 3705749..3705936,3706172..3706282,3706569..3706734, 3707482..3707649,3708168..3709429)) /locus_tag="TCM_022303" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG006386t1" /codon_start=1 /product="Phosphatidyl inositol monophosphate 5 kinase isoform 3" /protein_id="EOY07981.1" /db_xref="Phytozome:Glyma10g06800.1" /db_xref="TAIR:AT3G09920.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L850" /translation="MSGPVATVENVEGALSCAERTKSLDAITDIENGSILTNGDAVHS SETAGFRVGELLLPNGDSYSGSLLGNVPEGRGKYVWQGGCVYEGEWSCGMRHGTGKIQ WPTGTVYDGEFSGGYMHGTGTYIGSNKLTYKGRWKLNLKHGLGYQVYPNGDVFEASWI QGTTEGPGKYTWANGNVYLGNMKGGKMSGKGTLTWTNGDTFEGSWLNGMMHGFGVYTW SDGGFYVGTWTRGLKDGKGSFYPKSSRLPALQEVYLNALRKRGLLPDLRKQVHAHIHH ASSIDMGSIKVGGNRVSHRNSNKLSEGNLLNLEQSRNRNVSLERRWSLEVSIEKVIGH DSSFELSDSFTEGGEKGSETNAPILEREYMQGVLISELVLNNSFSPSSRRAKRRQKKL AKDIKRPGETIIKGHRSYDLMLSLQLGIRYTVGKITPVQRREVRASDFGPRASFWMNF PKEGSQLTPPHQSEDFKWKDYCPMVFRNLREMFKIDAADYMMSICGNDALRELSSPGK SGSIFFLSQDDRFMIKTLRKSEVKVLLRMLPNYHHHVRSYENTLITKFFGLHRIKPSS GQKFRFVVMGNMFCTELRIHRRFDLKGSSLGRSADNVEIDENTTLKDLDLNYCFYLEP SWQEALLRQIEIDSKFLEAQRIMDYSLLLGVHYRAPQHLRSLMSYNTADGLGSVAEEG SSHLWNLVYAIKII" CDS complement(join(3705173..3705180,3705282..3705430, 3705749..3705936,3706172..3706282,3706569..3706734, 3707482..3707649,3708168..3709429)) /locus_tag="TCM_022303" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG006386t1" /codon_start=1 /product="Phosphatidyl inositol monophosphate 5 kinase isoform 4" /protein_id="EOY07980.1" /db_xref="Phytozome:Glyma10g06800.1" /db_xref="TAIR:AT3G09920.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L850" /translation="MSGPVATVENVEGALSCAERTKSLDAITDIENGSILTNGDAVHS SETAGFRVGELLLPNGDSYSGSLLGNVPEGRGKYVWQGGCVYEGEWSCGMRHGTGKIQ WPTGTVYDGEFSGGYMHGTGTYIGSNKLTYKGRWKLNLKHGLGYQVYPNGDVFEASWI QGTTEGPGKYTWANGNVYLGNMKGGKMSGKGTLTWTNGDTFEGSWLNGMMHGFGVYTW SDGGFYVGTWTRGLKDGKGSFYPKSSRLPALQEVYLNALRKRGLLPDLRKQVHAHIHH ASSIDMGSIKVGGNRVSHRNSNKLSEGNLLNLEQSRNRNVSLERRWSLEVSIEKVIGH DSSFELSDSFTEGGEKGSETNAPILEREYMQGVLISELVLNNSFSPSSRRAKRRQKKL AKDIKRPGETIIKGHRSYDLMLSLQLGIRYTVGKITPVQRREVRASDFGPRASFWMNF PKEGSQLTPPHQSEDFKWKDYCPMVFRNLREMFKIDAADYMMSICGNDALRELSSPGK SGSIFFLSQDDRFMIKTLRKSEVKVLLRMLPNYHHHVRSYENTLITKFFGLHRIKPSS GQKFRFVVMGNMFCTELRIHRRFDLKGSSLGRSADNVEIDENTTLKDLDLNYCFYLEP SWQEALLRQIEIDSKFLEAQRIMDYSLLLGVHYRAPQHLRSLMSYNTADGLGSVAEEG F" gene 3710871..3727109 /locus_tag="TCM_022305" /note="dbxref CacaoGD:Thecc1EG022305" mRNA join(3710871..3711166,3719217..3719986,3720284..3720499, 3720593..3721714,3721898..3722020,3722592..3722773, 3722888..3723119,3723275..3723484,3724207..3724335, 3724910..3724978,3725224..3725346,3725817..3725867, 3725960..3726377) /locus_tag="TCM_022305" /product="Transducin family protein / WD-40 repeat family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30078.m002247" /inference="similar to AA sequence:ricco:30078.m002247" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2461t2" mobile_element 3712281..3712341 /note="source:CACAO_M_E1841_F5_scaffold_1 15860 15931" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA join(3719700..3719986,3720284..3720499,3720593..3721714, 3721898..3722020,3722592..3722773,3722888..3723119, 3723275..3723484,3724207..3724335,3724910..3724980, 3725224..3725346,3725815..3725867,3725960..3726107, 3726579..3726741) /locus_tag="TCM_022305" /product="Transducin family protein / WD-40 repeat family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30078.m002247" /inference="similar to AA sequence:ricco:30078.m002247" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2461t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2461t2" mRNA join(3719700..3719986,3720284..3720499,3720593..3721714, 3721898..3722020,3722592..3722773,3722888..3723119, 3723275..3723484,3724207..3724335,3724910..3724978, 3725224..3725346,3725817..3725867,3725958..3726107, 3726587..3726734) /locus_tag="TCM_022305" /product="Transducin family protein / WD-40 repeat family protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:30078.m002247" /inference="similar to AA sequence:ricco:30078.m002247" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2461t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2461t2" CDS join(3719753..3719986,3720284..3720499,3720593..3721714, 3721898..3722020,3722592..3722773,3722888..3723119, 3723275..3723484,3724207..3724335,3724910..3724978, 3725224..3725346,3725817..3725867,3725960..3726103) /locus_tag="TCM_022305" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30078.m002247" /codon_start=1 /product="Transducin family protein / WD-40 repeat family protein isoform 1" /protein_id="EOY07983.1" /db_xref="TAIR:AT3G21540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTI3" /translation="MVKAYLRYEPAVAFGVIVSVESNITYDSSGKHLFAPALEKLGVW HVRQGVCTKTLTPSPSSRGSSLAVTYVASSRSSLVASGYADGSIRIWDGDKGSCETTL NGHKGAVTALRYNKVGSLLASGSKDNDVILWDVVGETGLFRLRGHRDQVTDLVFLDSG KKLVSSSKDKFLRVWDLETQHCMQIVSGHHSEIWSIDVDPEERYLVAGSADLELRFYA VKHDSTNGESMLNVSGAENEKNGELSTENKWEVLKHFGEIQRQSKDRVATVRFNKSGN LLACQVAGKTVEIFRVLDEAESKRKAKRRINRKKEKKSTKVVAEATENVEAKYGTEEA GSFPVVTVPDVFKLLQTVRASKKICSISFCPITPKKSLASLALSLNNNLLEFYSIESG ASTKTLAIELQGHRSDVRSVTLSSDNSLLMSTSHNAVKIWNPSTGSCLRTIDSGYGLC GLIVPHNKYAIVGTKDGIIEIIDVGSGTCSEGVEAHGGSVRSIAAIPNENGFVSGSAD HDVKFWEYQLKQKPGQDSKCFTVSNVRTLKMNDDVLVVAVSPDAKYVAAALLDCTVKV FFMDSLKFFLSLYGHRLPVLCMDISSDGELIVTGSADKNLKIWGLDFGDCHKSIFAHA DSVMAVQFVRNTHYMFSAGKDRLVKYWDADKFELLLTLEGHLADVWCLAISSRGDFVV TGSHDRSIRRWDRTEEPFFIEEEKEKRLEEMFDADIDNAFENRYAPKEELPEEGAVAL AGKKTQETLTATDSIIDALDVAEMELKHIAEHEEEKTRGKVADFEPNMIMLGLSPSDY VLRALSNINANDLEQTLLALPFSDALKLLSYSKDWTSNPDKVELVCRIVTMLLRMHHS QLISTPSARPVLTVLKEILYARVKECKDTIGFNLAAMDHLKQLMASRSDALFRDAKSK LLEIRSQQSKRLEARTETKTEKRKKKKQKK" CDS join(3719753..3719986,3720284..3720499,3720593..3721714, 3721898..3722020,3722592..3722773,3722888..3723119, 3723275..3723484,3724207..3724335,3724910..3724978, 3725224..3725346,3725817..3725867,3725958..3725966) /locus_tag="TCM_022305" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30078.m002247" /codon_start=1 /product="Transducin family protein / WD-40 repeat family protein isoform 3" /protein_id="EOY07985.1" /db_xref="TAIR:AT3G21540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTI3" /translation="MVKAYLRYEPAVAFGVIVSVESNITYDSSGKHLFAPALEKLGVW HVRQGVCTKTLTPSPSSRGSSLAVTYVASSRSSLVASGYADGSIRIWDGDKGSCETTL NGHKGAVTALRYNKVGSLLASGSKDNDVILWDVVGETGLFRLRGHRDQVTDLVFLDSG KKLVSSSKDKFLRVWDLETQHCMQIVSGHHSEIWSIDVDPEERYLVAGSADLELRFYA VKHDSTNGESMLNVSGAENEKNGELSTENKWEVLKHFGEIQRQSKDRVATVRFNKSGN LLACQVAGKTVEIFRVLDEAESKRKAKRRINRKKEKKSTKVVAEATENVEAKYGTEEA GSFPVVTVPDVFKLLQTVRASKKICSISFCPITPKKSLASLALSLNNNLLEFYSIESG ASTKTLAIELQGHRSDVRSVTLSSDNSLLMSTSHNAVKIWNPSTGSCLRTIDSGYGLC GLIVPHNKYAIVGTKDGIIEIIDVGSGTCSEGVEAHGGSVRSIAAIPNENGFVSGSAD HDVKFWEYQLKQKPGQDSKCFTVSNVRTLKMNDDVLVVAVSPDAKYVAAALLDCTVKV FFMDSLKFFLSLYGHRLPVLCMDISSDGELIVTGSADKNLKIWGLDFGDCHKSIFAHA DSVMAVQFVRNTHYMFSAGKDRLVKYWDADKFELLLTLEGHLADVWCLAISSRGDFVV TGSHDRSIRRWDRTEEPFFIEEEKEKRLEEMFDADIDNAFENRYAPKEELPEEGAVAL AGKKTQETLTATDSIIDALDVAEMELKHIAEHEEEKTRGKVADFEPNMIMLGLSPSDY VLRALSNINANDLEQTLLALPFSDALKLLSYSKDWTSNPDKVELVCRIVTMLLRMHHS QLISTPSARPVLTVLKEILYARVKECKDTIGFNLAAMDHLKSN" CDS join(3719753..3719986,3720284..3720499,3720593..3721714, 3721898..3722020,3722592..3722773,3722888..3723119, 3723275..3723484,3724207..3724335,3724910..3724980, 3725224..3725281) /locus_tag="TCM_022305" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30078.m002247" /codon_start=1 /product="Transducin family protein / WD-40 repeat family protein isoform 2" /protein_id="EOY07984.1" /db_xref="TAIR:AT3G21540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTI3" /translation="MVKAYLRYEPAVAFGVIVSVESNITYDSSGKHLFAPALEKLGVW HVRQGVCTKTLTPSPSSRGSSLAVTYVASSRSSLVASGYADGSIRIWDGDKGSCETTL NGHKGAVTALRYNKVGSLLASGSKDNDVILWDVVGETGLFRLRGHRDQVTDLVFLDSG KKLVSSSKDKFLRVWDLETQHCMQIVSGHHSEIWSIDVDPEERYLVAGSADLELRFYA VKHDSTNGESMLNVSGAENEKNGELSTENKWEVLKHFGEIQRQSKDRVATVRFNKSGN LLACQVAGKTVEIFRVLDEAESKRKAKRRINRKKEKKSTKVVAEATENVEAKYGTEEA GSFPVVTVPDVFKLLQTVRASKKICSISFCPITPKKSLASLALSLNNNLLEFYSIESG ASTKTLAIELQGHRSDVRSVTLSSDNSLLMSTSHNAVKIWNPSTGSCLRTIDSGYGLC GLIVPHNKYAIVGTKDGIIEIIDVGSGTCSEGVEAHGGSVRSIAAIPNENGFVSGSAD HDVKFWEYQLKQKPGQDSKCFTVSNVRTLKMNDDVLVVAVSPDAKYVAAALLDCTVKV FFMDSLKFFLSLYGHRLPVLCMDISSDGELIVTGSADKNLKIWGLDFGDCHKSIFAHA DSVMAVQFVRNTHYMFSAGKDRLVKYWDADKFELLLTLEGHLADVWCLAISSRGDFVV TGSHDRSIRRWDRTEEPFFIEEEKEKRLEEMFDADIDNAFENRYAPKEELPEEGAVAL AGKKTQETLTATDSIIDALDVAEMELKHIAEHEEEKTRGKVADFEPNMIMLGLSPSDY VLRALSNINANDLEQTLLALPFSDALKLLSYSKDWTSNPDKVLSWFAGLLQCCCGCII VS" mRNA join(<3719813..3719986,3720284..3720499,3720593..3721714, 3721898..3722020,3722592..3722773,3723338..3723484, 3724207..3724335,3724910..3724978,3725224..3725346, 3725817..3725867,3725960..3726107,3726579..3727109) /locus_tag="TCM_022305" /product="Transducin family protein / WD-40 repeat family protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:30078.m002247" /inference="similar to AA sequence:ricco:30078.m002247" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1177t32; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2461t2" mRNA join(<3719813..3719986,3720284..3720499,3720593..3721714, 3721898..3722020,3722592..3722773,3723338..3723484, 3724207..3724335,3724910..3724978,3725224..3725346, 3725817..3725867,3725960..3726603) /locus_tag="TCM_022305" /product="Transducin family protein / WD-40 repeat family protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:30078.m002247" /inference="similar to AA sequence:ricco:30078.m002247" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1177t29; alternateUTRof:Thecc1EG022305t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2461t2" CDS join(<3719813..3719986,3720284..3720499,3720593..3721714, 3721898..3722020,3722592..3722773,3723338..3723386) /locus_tag="TCM_022305" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30078.m002247" /codon_start=1 /product="Transducin family protein / WD-40 repeat family protein isoform 4" /protein_id="EOY07986.1" /db_xref="TAIR:AT3G21540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTI3" /translation="ESNITYDSSGKHLFAPALEKLGVWHVRQGVCTKTLTPSPSSRGS SLAVTYVASSRSSLVASGYADGSIRIWDGDKGSCETTLNGHKGAVTALRYNKVGSLLA SGSKDNDVILWDVVGETGLFRLRGHRDQVTDLVFLDSGKKLVSSSKDKFLRVWDLETQ HCMQIVSGHHSEIWSIDVDPEERYLVAGSADLELRFYAVKHDSTNGESMLNVSGAENE KNGELSTENKWEVLKHFGEIQRQSKDRVATVRFNKSGNLLACQVAGKTVEIFRVLDEA ESKRKAKRRINRKKEKKSTKVVAEATENVEAKYGTEEAGSFPVVTVPDVFKLLQTVRA SKKICSISFCPITPKKSLASLALSLNNNLLEFYSIESGASTKTLAIELQGHRSDVRSV TLSSDNSLLMSTSHNAVKIWNPSTGSCLRTIDSGYGLCGLIVPHNKYAIVGTKDGIIE IIDVGSGTCSEGVEAHGGSVRSIAAIPNENGFVSGSADHDVKFWEYQLKQKPGQDSKC FTVSNVRTLKMNDDVLVVAVSPDAKYVAAALLDCTVKVFFMDSLKFFLSLYGHRLPVL CMDISSDGELIVTGSADKNLKIWGLDFGDCHKSIFAHADRDMHLRKNSQRRELLH" CDS join(<3719813..3719986,3720284..3720499,3720593..3721714, 3721898..3722020,3722592..3722773,3723338..3723386) /locus_tag="TCM_022305" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:30078.m002247" /codon_start=1 /product="Transducin family protein / WD-40 repeat family protein isoform 4" /protein_id="EOY07987.1" /db_xref="TAIR:AT3G21540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTI3" /translation="ESNITYDSSGKHLFAPALEKLGVWHVRQGVCTKTLTPSPSSRGS SLAVTYVASSRSSLVASGYADGSIRIWDGDKGSCETTLNGHKGAVTALRYNKVGSLLA SGSKDNDVILWDVVGETGLFRLRGHRDQVTDLVFLDSGKKLVSSSKDKFLRVWDLETQ HCMQIVSGHHSEIWSIDVDPEERYLVAGSADLELRFYAVKHDSTNGESMLNVSGAENE KNGELSTENKWEVLKHFGEIQRQSKDRVATVRFNKSGNLLACQVAGKTVEIFRVLDEA ESKRKAKRRINRKKEKKSTKVVAEATENVEAKYGTEEAGSFPVVTVPDVFKLLQTVRA SKKICSISFCPITPKKSLASLALSLNNNLLEFYSIESGASTKTLAIELQGHRSDVRSV TLSSDNSLLMSTSHNAVKIWNPSTGSCLRTIDSGYGLCGLIVPHNKYAIVGTKDGIIE IIDVGSGTCSEGVEAHGGSVRSIAAIPNENGFVSGSADHDVKFWEYQLKQKPGQDSKC FTVSNVRTLKMNDDVLVVAVSPDAKYVAAALLDCTVKVFFMDSLKFFLSLYGHRLPVL CMDISSDGELIVTGSADKNLKIWGLDFGDCHKSIFAHADRDMHLRKNSQRRELLH" gene complement(3726322..3728881) /locus_tag="TCM_022306" /note="dbxref CacaoGD:Thecc1EG022306" mRNA complement(join(3726322..3726914,3727206..3727524, 3727791..3728108,3728771..3728881)) /locus_tag="TCM_022306" /product="Alpha-expansin 3 precursor" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g37060.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021927t1" /inference="similar to AA sequence:frave:gene09808" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g10329t00001" CDS complement(join(3726590..3726914,3727206..3727524, 3727791..3728034)) /locus_tag="TCM_022306" /note="dbxref frave:gene09808; paralog of Thecc1EG021927t1" /codon_start=1 /product="Alpha-expansin 3 precursor" /protein_id="EOY07988.1" /db_xref="TAIR:AT5G02260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S0C9" /translation="MASPSKAFSATTLLLLAVIIMLLLPECHADHPVKKTSSIHHVVR RVGNPVVSLKHKGRPPFKPGPWKQGHATFYEGGSGTFGGACGYEDVVKMGYGLNTAAL SAALFNNGQKCGACFEIKCVDSSEWCKPGQPSLIVTATDSCPPNYDLPSDNGGWCNPP RAHFDLAKPAFGQIAEYQGGIVPVQYRRVPCKKQGGIRFTVTGNPYFNLVSVWNVGGA GDVISVHVLKGDNKQTWIPLKRNWGQKWETDAKLVGEDLSFRVRTSDGKTSTSWHVAP KNWQFDQTFLGSKNFRGLP" gene complement(3728897..3739260) /locus_tag="TCM_022307" /note="dbxref CacaoGD:Thecc1EG022307" mRNA complement(join(3728897..3729787,3729877..3730019, 3730309..3730541,3730744..3730932,3731983..3732128, 3732535..3732664,3732758..3732810,3732884..3733004, 3733233..3733405,3734025..3734293,3735101..3735149, 3735700..3735795,3735889..3736045,3736386..3736491, 3736566..3736651,3737017..3737081,3738043..3738294, 3738936..3739260)) /locus_tag="TCM_022307" /product="Glutamate-ammonia ligases,catalytics,glutamate-ammonia ligases isoform 1" /inference="alignment:exonerate-protein:2:frave:gene09811" /inference="similar to AA sequence:Phytozome:GSVIVT01033692001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2537t2" mRNA complement(join(3729282..3729787,3729877..3730019, 3730309..3730498,3730744..3730932,3731983..3732128, 3732535..3732664,3732758..3732810,3732884..3733004, 3733233..3733405,3734025..3734293,3735101..3735149, 3735700..3735795,3735889..3736045,3736386..3736491, 3736566..3736681,3737014..3737081,3738043..3738294, 3738936..3739249)) /locus_tag="TCM_022307" /product="Glutamate-ammonia ligases,catalytics,glutamate-ammonia ligases isoform 3" /inference="alignment:exonerate-protein:2:frave:gene09811" /inference="similar to AA sequence:Phytozome:GSVIVT01033692001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc912t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2537t2" mRNA complement(join(3729282..3729787,3729877..3730019, 3730309..3730541,3730744..3730932,3731983..3732128, 3732535..3732664,3732758..3732810,3732884..3733004, 3733233..3733405,3734025..3734293,3735101..3735149, 3735700..3735795,3735889..3736045,3736386..3736491, 3736566..3736681,3737014..3737081,3738043..3738294, 3738936..3739249)) /locus_tag="TCM_022307" /product="Glutamate-ammonia ligases,catalytics,glutamate-ammonia ligases isoform 2" /inference="alignment:exonerate-protein:2:frave:gene09811" /inference="similar to AA sequence:Phytozome:GSVIVT01033692001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc923t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2537t2" CDS complement(join(3729725..3729787,3729877..3730019, 3730309..3730541,3730744..3730932,3731983..3732128, 3732535..3732664,3732758..3732810,3732884..3733004, 3733233..3733405,3734025..3734293,3735101..3735149, 3735700..3735795,3735889..3736045,3736386..3736491, 3736566..3736651,3737017..3737081,3738043..3738294, 3738936..3739097)) /locus_tag="TCM_022307" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Glutamate-ammonia ligases,catalytics,glutamate-ammonia ligases isoform 1" /protein_id="EOY07989.1" /db_xref="Phytozome:GSVIVT01033692001" /db_xref="TAIR:AT3G53180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4J9A0" /translation="MEFAELREAIEKMELVDSHAHNIVPFESSFAFINSLSEATGHAV SFAPHSLSFKRNLREIAELYGTESSLDAVEQYRRSSGLQAISSKCFKAAGISAILVDD GLKLDKKHDIQWHKNFVPFVGRILRIERLAEEILDGELPDGSTWTLDAFTETFLKSLS IAAYRSGLEINPHVTREDAEIGLSEVLQSGKPVRVTNKSFIDHILTCSLEVALQFDLP LQIHTGFGDKDLDLRLSNPLHLRTLLEDTRFSGCRIVLLHASYPFSKEASYLASVYSQ VYLDFGLAIPKLSVHGMISSVKELLELAPIKKVMFSTDAYATPETYYLGAKRAREVIF SVLRDACIDRDLSIAEAIEASKDIFVQNAIQLYKINLGRELFDSNASESPSYMIGTYV PEHSVSLVRIIWVDASGQHRCRVVPKKRFDNVVKKNGVGLTFACMGLTSAIDGPAEET NLTGTGEIRLMPDISTRREIPWTKQEEMVLADMHLKPGEAWEYCPREALRRVSKVLKD EFNLVMNAGFENEFYLLKKLERDGKEEWVPIDSKPYCSFSGFDAISTLFQEIIAALNS LNVVVEQLHAEAGKGQFEMALGHTACTYAADNLIFTREVVRAVASKHGLLATFVPKYA LDDIGSGSHVHLSLWQNGKNVFVASDASSQHGMSKVGEEFMAGVLYHLPSILAFTAPL PNSYDRIQPNTWSGAYQCWGKENREAPLRTACPPGIPNGFVSNFEIKSFDGCANPHLG LAAIIAAGIDGLRRHLRLPGPIDANPATLEGKLQRLPKSLSESLEALQKDNVVRELIG EKLFVAIKGVRKAEIDYYSKNKDAYKQLIHRY" CDS complement(join(3729725..3729787,3729877..3730019, 3730309..3730541,3730744..3730932,3731983..3732128, 3732535..3732664,3732758..3732810,3732884..3733004, 3733233..3733405,3734025..3734293,3735101..3735149, 3735700..3735795,3735889..3736045,3736386..3736491, 3736566..3736681,3737014..3737081,3738043..3738294, 3738936..3739097)) /locus_tag="TCM_022307" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Glutamate-ammonia ligases,catalytics,glutamate-ammonia ligases isoform 2" /protein_id="EOY07990.1" /db_xref="Phytozome:GSVIVT01033692001" /db_xref="TAIR:AT3G53180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4J9A0" /translation="MEFAELREAIEKMELVDSHAHNIVPFESSFAFINSLSEATGHAV SFAPHSLSFKRNLREIAELYGTESSLDAVEQYRRSSGLQAISSKCFKAAGISAILVDD GLKLDKKHDIQWHKNFVPFVGRILRIERLAEEILDGELPDGSTWTLDAFTETFLKSLR SVANEIVGLKSIAAYRSGLEINPHVTREDAEIGLSEVLQSGKPVRVTNKSFIDHILTC SLEVALQFDLPLQIHTGFGDKDLDLRLSNPLHLRTLLEDTRFSGCRIVLLHASYPFSK EASYLASVYSQVYLDFGLAIPKLSVHGMISSVKELLELAPIKKVMFSTDAYATPETYY LGAKRAREVIFSVLRDACIDRDLSIAEAIEASKDIFVQNAIQLYKINLGRELFDSNAS ESPSYMIGTYVPEHSVSLVRIIWVDASGQHRCRVVPKKRFDNVVKKNGVGLTFACMGL TSAIDGPAEETNLTGTGEIRLMPDISTRREIPWTKQEEMVLADMHLKPGEAWEYCPRE ALRRVSKVLKDEFNLVMNAGFENEFYLLKKLERDGKEEWVPIDSKPYCSFSGFDAIST LFQEIIAALNSLNVVVEQLHAEAGKGQFEMALGHTACTYAADNLIFTREVVRAVASKH GLLATFVPKYALDDIGSGSHVHLSLWQNGKNVFVASDASSQHGMSKVGEEFMAGVLYH LPSILAFTAPLPNSYDRIQPNTWSGAYQCWGKENREAPLRTACPPGIPNGFVSNFEIK SFDGCANPHLGLAAIIAAGIDGLRRHLRLPGPIDANPATLEGKLQRLPKSLSESLEAL QKDNVVRELIGEKLFVAIKGVRKAEIDYYSKNKDAYKQLIHRY" CDS complement(join(3730465..3730498,3730744..3730932, 3731983..3732128,3732535..3732664,3732758..3732810, 3732884..3733004,3733233..3733405,3734025..3734293, 3735101..3735149,3735700..3735795,3735889..3736045, 3736386..3736491,3736566..3736681,3737014..3737081, 3738043..3738294,3738936..3739097)) /locus_tag="TCM_022307" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Glutamate-ammonia ligases,catalytics,glutamate-ammonia ligases isoform 3" /protein_id="EOY07991.1" /db_xref="Phytozome:GSVIVT01033692001" /db_xref="TAIR:AT3G53180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4J9A0" /translation="MEFAELREAIEKMELVDSHAHNIVPFESSFAFINSLSEATGHAV SFAPHSLSFKRNLREIAELYGTESSLDAVEQYRRSSGLQAISSKCFKAAGISAILVDD GLKLDKKHDIQWHKNFVPFVGRILRIERLAEEILDGELPDGSTWTLDAFTETFLKSLR SVANEIVGLKSIAAYRSGLEINPHVTREDAEIGLSEVLQSGKPVRVTNKSFIDHILTC SLEVALQFDLPLQIHTGFGDKDLDLRLSNPLHLRTLLEDTRFSGCRIVLLHASYPFSK EASYLASVYSQVYLDFGLAIPKLSVHGMISSVKELLELAPIKKVMFSTDAYATPETYY LGAKRAREVIFSVLRDACIDRDLSIAEAIEASKDIFVQNAIQLYKINLGRELFDSNAS ESPSYMIGTYVPEHSVSLVRIIWVDASGQHRCRVVPKKRFDNVVKKNGVGLTFACMGL TSAIDGPAEETNLTGTGEIRLMPDISTRREIPWTKQEEMVLADMHLKPGEAWEYCPRE ALRRVSKVLKDEFNLVMNAGFENEFYLLKKLERDGKEEWVPIDSKPYCSFSGFDAIST LFQEIIAALNSLNVVVEQLHAEAGKGQFEMALGHTACTYAADNLIFTREVVRAVASKH GLLATFVPKYALDDIGSGSHVHLSLWQNGKNVFVASDASSQHGMSKVGEEFMAGVLYH LPSILAFTAPLPNSAGEKKTEKLL" mobile_element 3740448..3740560 /note="source:CACAO_M_S_E5285_F300_scaffold_1 17462 17579" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3740624..3741862) /note="source:CACAO_M_E13604_F90_scaffold_3 14438 15658" /mobile_element_type="retrotransposon:LTR/Copia" gene 3755038..3756269 /locus_tag="TCM_022309" /note="dbxref CacaoGD:Thecc1EG022309" mRNA join(3755038..3755122,3755307..3756269) /locus_tag="TCM_022309" /product="Thaumatin-like protein 1a" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033694001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022310t1" /inference="similar to AA sequence:frave:gene11532" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.41 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2401t1" CDS join(3755071..3755122,3755307..3756025) /locus_tag="TCM_022309" /note="dbxref frave:gene11532; paralog of Thecc1EG022310t1" /codon_start=1 /product="Thaumatin-like protein 1a" /protein_id="EOY07992.1" /db_xref="TAIR:AT1G20030.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FSG7" /translation="MEVQVIFAFALAIFFFYGAQSATFTFTNNCPYTVWPATLTGAGP QLSSTGFELASKASSTLNVPAPWTGRFWARTQCANTNGKFECATADCGSGQVTCNGAG AIPQASLIEFTLAANSGQDFYDVSLVDGFNLPLSVTPQGGSDGCSAASCPANVNAACP PELQVKGSDGAVIACKSACLAFNQPQYCCTGAYNSPNTCQPTIYSKIFKSQCPQAYSY AFDDKSSTFTCTGGANYLITFCPRRFDYVQIVMTNDHK" mobile_element complement(3756546..3757687) /note="source:CACAO_Again_on_E5_scaffold_1 4994 6169" /mobile_element_type="transposon:TIR/hAT" mobile_element 3757457..3757699 /note="source:scaffold_5_CACTA_0599 7 588" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3757700..3758062) /note="source:CACAO_Again_on_E210_scaffold_9 1 378" /mobile_element_type="transposon:TIR/hAT" gene 3758335..3760031 /locus_tag="TCM_022310" /note="dbxref CacaoGD:Thecc1EG022310" mRNA join(3758335..3758360,3758612..3758735,3758880..3760031) /locus_tag="TCM_022310" /product="Thaumatin-like protein 1a" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g06880.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022309t1" /inference="similar to AA sequence:frave:gene11532" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.37 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05913t00001" CDS join(3758681..3758735,3758880..3759553) /locus_tag="TCM_022310" /note="dbxref frave:gene11532; paralog of Thecc1EG022309t1" /codon_start=1 /product="Thaumatin-like protein 1a" /protein_id="EOY07993.1" /db_xref="TAIR:AT1G20030.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FSG7" /translation="MEAQVIFGISLAVIFFVSGAKSATFTLNNNCPFTVWPGILTSSG PQLSTTGFELASKVSLILDVPATWSGRLWARTQCTNVNGKFQCATGDCASGQVSCGGA GGIPPVSLAEFTLAANNGQDFYDVSLVDGFNLPLSIAPQGGSGGCTPVSCTANVNAVC PQELQVKGSDGGVVACKSACLAFNQSQYCCTGNFSTPDTCPPTNYSNIFKSQCPQAYS YAYDDKSGLATCTGGANYLITFCP" mobile_element 3760156..3760883 /note="source:CACAO_M_S_E5285_F300_scaffold_1 17254 17943" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 3762037..3762448 /note="source:CACAO_MITE_S121_scaffold_5 1 412" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(3766172..3766256) /note="source:CACAO_M_E11930_F2_scaffold_2 186 270" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3767942..3768848 /note="source:CACAO_M_E69780_F2_scaffold_9 1 825" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3769086..3769168) /note="source:CACAO_M_E44173_F2_scaffold_5 160 242" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3769557..3770033 /note="source:INTACT579_F10_scaffold_3-int 3180 3639" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 3771541..3772369 /note="source:INTACT579_F10_scaffold_3-int 4928 5756" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3772519..3772871) /note="source:CACAO_M_E58877_F5_scaffold_9 20417 20735" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3772706..3773179) /note="source:CACAO_M_E52694_F25_scaffold_8 4626 5093" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3773585..3774349) /note="source:CACAO_M_E49539_F76_scaffold_7 4097 4892" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 3776031..3789584 /locus_tag="TCM_022312" /note="dbxref CacaoGD:Thecc1EG022312" mRNA join(3776031..3776811,3777043..3777145,3777236..3778048, 3778267..3778656,3779335..3779750,3780012..3780099, 3780193..3780624,3781361..3781418,3781502..3782226, 3785945..3786086,3789532..3789584) /locus_tag="TCM_022312" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g34830.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027820t1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.46 coverage" CDS join(3776177..3776811,3777043..3777145,3777236..3778048, 3778267..3778656,3779335..3779750,3780012..3780099, 3780193..3780624,3781361..3781418,3781502..3781950) /locus_tag="TCM_022312" /note="paralog of Thecc1EG027820t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07994.1" /translation="MASSSASPLNIYRNDYEIELQMRQIQQEKGDCLTQGHISILPER VHLDLQQNDFTEMVGIWEQWRRAHRDNFQNKYGHIAWLLYVPVDDQMLRAIVQFWDPS YRCFVFNKVDMTPTIEEYSSLLRIDHMQPDKIYWRAQKTGHRRKLAKLLGMTTVEVDK HLKKKGDTECLPWSFLNGYIKKHMEDEQGLLAFAMAIYDLVVFPKVLGHVEVEWPDYK RKEEWVARLRRLMSIEVTWRAPWMPRMQFGSEQFVPMTHQLDQLEFTYGEPETLKRIE EIAQDWKKTCRVDQGRVTDEVTTRYHTWHDQRVKNVIHPPKDPSKHPVNPEPQDVLLE SELTRKRLEKEMMNMKRRHEDELEEVKKETARKVRVALKERDEWQSKFEEVSVANSSL LARIQELQSANNALQHEVQRKGQTIQELKNDCDMLETAMEGYKAQYEAIRQEYFQMRE RNNSCTQSLQRKEAEMQWILRQMREVAFRARVMADKTEELRREILPKDELSERLISHL KMVRDQYDKNKISEKQILHRYNTRARSKIMGDQHSERMDKIEKKQEEIMGQLSKILEL ISTDKGKKAAGSSGTPEDVQQTETNTDPVYPPGFTPPPARNASIPMPSVGQYPFFGMP IGPPPTYAQQRPIGGASPSDPISGKIEGGDMTNTRKGGTFKRKEGEAQAITSGQHQGG TYNPYQPYLPYPYYPAVNNTSQSPYPYPPMPNAFPNLYPYNPIQRTLYPTNIHPPTST TVTASTTQQTTPSNNHTTGESRGWRNKQEKVQFDPIPIPYAELFTQEVYVKRNIREVE TSMEKVFEALVKADMLEDCSSFRKEVQRMMDESKIEFYTEASESAVNMISKESTHPMK IKPLTIFYEPKGEFVEDKNRAKMIIEVPKPFPYKDNKAVPWNYNCKVQVSEAKKWIAE SQDDAANITGVGGITRSGRCYSPEAFENLKNEKGKEKEQSPRKEKKRRKKCLNVPFDP SSSLTPRYRAGAGLGKELQGIRSPIRTTKNEERFGLGYKPAKKEREEMIAERRKERLA RFKGHELEIRGMTYPHLYKTFRSGGCIFPESLTVGNRESVLALGGTFSDLSICATEEG EEQPGNVDEIPTTYLGPPNLKLSSWTTMSLPVTCDSISK" gene 3784018..3785981 /locus_tag="TCM_022313" /note="dbxref CacaoGD:Thecc1EG022313" mRNA join(3784018..3784385,3784523..3784896,3785467..3785583, 3785696..3785981) /locus_tag="TCM_022313" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005366t1" /inference="similar to AA sequence:Phytozome:Glyma06g26140.1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.65 coverage" CDS join(3784038..3784385,3784523..3784558) /locus_tag="TCM_022313" /note="paralog of Thecc1EG005366t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07995.1" /db_xref="Phytozome:Glyma06g26140.1" /translation="MGIQAAIERKIHILEVYGDSALVIYQLRGEWETRDSKLVRYHKY VSKLIENFDEICFNHLPREENQMADALATLAAMFKVGTDVKIQPIMINLRECPAHCSS VEEEIDGKPWYHDIMRGFNRSSENS" mobile_element complement(3787103..3787485) /note="source:CACAO_M_E52694_F25_scaffold_8 4720 5093" /mobile_element_type="retrotransposon:LTR/Copia" gene 3791716..3792976 /locus_tag="TCM_022314" /note="dbxref CacaoGD:Thecc1EG022314" mRNA join(3791716..3791817,3791955..3792976) /locus_tag="TCM_022314" /product="Thaumatin-like protein 1a" /inference="alignment:exonerate- protein:2:frave:gene11532.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022309t1" /inference="similar to AA sequence:frave:gene11532" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13473t1" CDS join(3791766..3791817,3791955..3792634) /locus_tag="TCM_022314" /note="dbxref frave:gene11532; paralog of Thecc1EG022309t1" /codon_start=1 /product="Thaumatin-like protein 1a" /protein_id="EOY07996.1" /db_xref="TAIR:AT1G20030.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FSG7" /translation="MMRLYLLFGLSLALLMSGAHMATLNIRNNCPYTIWPGTLTGGGG AQLPNTGFELAPQASNSINVPAPWTGRLWARTQCSTSSGSFSCATANCGSGQVACNGA GAVPPASLVEFTLAANGGQDFYDVSLVDGFNLPVSITPQGGSGPTCTTTSCAANVNSV CPSELAVRGSDGNIIACKSACVAFNQPQYCCTGDFDSPETCEPSNYSRIFKGQCPQAY SYAYDDPSSTFSCTGGPNYLITFCP" mobile_element complement(3793183..3793384) /note="source:scaffold_7_CACTA_0779 11395 11580" /mobile_element_type="transposon:TIR/CACTA" gene 3798634..3806838 /locus_tag="TCM_022315" /note="dbxref CacaoGD:Thecc1EG022315" mRNA join(3798634..3798713,3803535..3805024,3805248..3805347, 3805460..3806838) /locus_tag="TCM_022315" /product="Uncharacterized protein" /inference="similar to AA sequence:Phytozome:Glyma09g10240.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.14 coverage; weak similarity to RNA-directed DNA polymerase (reverse transcriptase)-related family protein" mobile_element complement(3800336..3800738) /note="source:INTACT525_F2_scaffold_2-int 5294 5696" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3801266..3801504 /note="source:INTACT751_F6_scaffold_4-int 1084 1325" /mobile_element_type="retrotransposon:LTR/Unclassified" CDS join(3803599..3805024,3805248..3805347,3805460..3805937) /locus_tag="TCM_022315" /note="weak similarity to RNA-directed DNA polymerase (reverse transcriptase)-related family protein" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07997.1" /db_xref="Phytozome:Glyma09g10240.1" /db_xref="TAIR:AT3G24255.1" /translation="MMNCTLIANEVIDFVKKKNEGGFLLKVDFKKAYDSVDWTFLQLV MRNIGFGERWRKWVMGCVSNAKVSVLVNGVATEPFKMSRGLRQGCPLSPFLFNIVAKA FSQMMDGGEIVGLCKGIPIGLRGLRISHLQFADDTMIFLKSEIESLVNAKRILRCFQA ISGLRINFHKSSLAGIGTNENFVRECAERINYMFEVIPMVYLGLPLKANPNSIQTWKP IIEKFETRLAGWKAKTLSIGGRVALLRSVLSSLPIFYMSIFQIPKRVIKELEKIERRF LWCGSEKKQKIHYIEWSKVCNYKENGGLGIINMEVKNRALLNKWLWRYGSEMGSLWRE VIVKKVGGNLINLIPEMSANKRVSTVWKNIIKPLSPTNDFSLQVSTDMQLVVGDGSRI LFWADRWTDGGILKDLYPIIFALVRNKDGYIQEFGRWEEEVWVWEVQLRRPTFGWEED QLTQLKECIEQYHLSRKLKDSLAWKGSRRLRGIYFCTVQRYGRSGQNGVKLGSMLGGL WNEVVFKGIAWDSNQTYEISKLRVATWAKAKWPMKYGEILDTYRFPQLGANLAKEENG RKVEGWCKPAQGEMKFNVDRAAKGSPREAGIGGAMRDEHGHVKIIFSKAIGIGDLNLA KIRAIREAFLLFIASKWNQSHSLIIESDSCNAVKWVNKPMEAP" gene 3807404..3808909 /locus_tag="TCM_022316" /note="dbxref CacaoGD:Thecc1EG022316" mRNA join(3807404..3807511,3807620..3807926,3808400..3808467, 3808527..3808909) /locus_tag="TCM_022316" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.32 coverage" CDS join(3807404..3807511,3807620..3807926,3808400..3808467, 3808527..3808769) /locus_tag="TCM_022316" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY07998.1" /translation="MRPSVKQMQVFESISYGRIPEEHQDKFLPKAQIGVLNQSRVDVD YEPFHFVNIQDINVLLVDEDEIVDEAPVRGVRSIQDIHQRCQLAMTKPSSFVENFFDE HCVKHQALRDVENQGEIGIIHYNKGEQIVDTMTKVLYPLTASSDGQTEFTFATQLVVV QADIIEILSSVTRVNSTRDVGGTAPALLQATWPEPQFVVAQLKLPEEVEHCVRAQSLP HPWRGNVNGICCLGANSNPVFGN" mobile_element 3810430..3810778 /note="source:INTACT687_F13_scaffold_3-int 1298 1642" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3810464..3810860 /note="source:scaffold_1_CACTA_0008 953 1363" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3810809..3811075 /note="source:CACAO_M_S_E5285_F300_scaffold_1 17521 17787" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3812563..3812717) /note="source:scaffold_1_CACTA_0008 7212 7366" /mobile_element_type="transposon:TIR/CACTA" gene complement(3812767..3837604) /locus_tag="TCM_022317" /note="dbxref CacaoGD:Thecc1EG022317" mRNA complement(join(3812767..3813776,3813863..3813970, 3814214..3814307,3814396..3814481,3814587..3814658, 3815143..3815241,3817093..3817167,3817266..3817379, 3819414..3819519,3819679..3819779,3819889..3819984, 3820093..3820153,3820258..3820380,3820462..3820643, 3821249..3821380,3821523..3821595,3821730..3821863, 3821949..3822023,3822127..3822255,3822406..3822515, 3822597..3822835,3823852..3823952,3824054..3824134, 3824960..3825105,3825520..3825601,3825977..3826112, 3826500..3826579,3826654..3826783,3828072..3828193, 3828466..3828555,3829092..3829151,3829632..3829706, 3829798..3829896,3830104..3830169,3830277..3830366, 3830727..3830849,3830943..3831042,3831116..3831183, 3831394..3831471,3831601..3831690,3832584..3832689, 3832919..3833022,3833376..3833439,3833534..3833612, 3834103..3834198,3834315..3834405,3834634..3834705, 3835124..3835255,3835347..3835401,3835480..3835570, 3835663..3836059)) /locus_tag="TCM_022317" /product="ARM repeat superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30078.m002241" /inference="similar to AA sequence:ricco:30078.m002241" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2543t5" mRNA complement(join(3813035..3813776,3813863..3813970, 3814214..3814304,3814396..3814481,3814587..3814658, 3815143..3815241,3817266..3817379,3819414..3819519, 3819679..3819779,3819889..3819984,3820093..3820153, 3820258..3820380,3820462..3820643,3821249..3821380, 3821523..3821595,3821730..3821863,3821949..3822023, 3822127..3822255,3822406..3822515,3822597..3822835, 3823852..3823952,3824054..3824134,3824960..3825105, 3825520..3825601,3825977..3826112,3826500..3826579, 3826654..3826783,3828072..3828193,3828466..3828555, 3829092..3829151,3829632..3829706,3829798..3829896, 3830104..3830169,3830277..3830366,3830727..3830849, 3830943..3831042,3831116..3831183,3831394..3831471, 3831601..3831690,3832584..3832689,3832919..3833022, 3833376..3833439,3833534..3833612,3834103..3834198, 3834315..3834405,3834634..3834705,3835124..3835255, 3835347..3835401,3835480..3835570,3835663..3835775, 3836751..3836806,3836893..3836987,3837511..3837604)) /locus_tag="TCM_022317" /product="ARM repeat superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30078.m002241" /inference="similar to AA sequence:ricco:30078.m002241" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:PASA:2:TSA:puevd3b021602t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2543t5" mRNA complement(join(3813091..3813778,3813863..3813970, 3814213..3814304,3814396..3814481,3814587..3814661, 3815143..3815241,3817266..3817379,3819414..3819519, 3819679..3819779,3819889..3819984,3820093..3820153, 3820258..3820380,3820462..3820643,3821249..3821380, 3821523..3821595,3821730..3821863,3821949..3822023, 3822127..3822255,3822406..3822515,3822597..3822835, 3823852..3823952,3824054..3824134,3824960..3825105, 3825520..3825601,3825977..3826112,3826500..3826579, 3826654..3826783,3828072..3828193,3828466..3828555, 3829092..3829151,3829632..3829706,3829798..3829896, 3830104..3830169,3830277..3830366,3830727..3830849, 3830943..3831042,3831116..3831171)) /locus_tag="TCM_022317" /product="ARM repeat superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:30078.m002241" /inference="similar to AA sequence:ricco:30078.m002241" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2543t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2543t5; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1061t10" CDS complement(join(3813597..3813776,3813863..3813970, 3814214..3814304,3814396..3814481,3814587..3814658, 3815143..3815241,3817266..3817379,3819414..3819519, 3819679..3819779,3819889..3819984,3820093..3820153, 3820258..3820380,3820462..3820643,3821249..3821380, 3821523..3821595,3821730..3821863,3821949..3822023, 3822127..3822255,3822406..3822515,3822597..3822835, 3823852..3823952,3824054..3824134,3824960..3825105, 3825520..3825601,3825977..3826112,3826500..3826579, 3826654..3826783,3828072..3828193,3828466..3828555, 3829092..3829151,3829632..3829706,3829798..3829896, 3830104..3830169,3830277..3830366,3830727..3830849, 3830943..3831042,3831116..3831183,3831394..3831471, 3831601..3831690,3832584..3832689,3832919..3833022, 3833376..3833439,3833534..3833612,3834103..3834198, 3834315..3834405,3834634..3834705,3835124..3835255, 3835347..3835401,3835480..3835570,3835663..3835775, 3836751..3836806,3836893..3836987,3837511..3837538)) /locus_tag="TCM_022317" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30078.m002241" /codon_start=1 /product="ARM repeat superfamily protein isoform 2" /protein_id="EOY08000.1" /db_xref="TAIR:AT2G36810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IP13" /translation="MPLNLIHILGKWTSSTSSKTGSNLVKQGGSKKEPKPTIHLDDAT FPSKSAKGARRIKIMREFSFPPLFDASFPFLLKFVTHNSMASSSSIGGSLPAPEAVQV IVSSLADESPMVREASMASLKDISPLNPLLVLDCCSAVSRGGRRRFGNMAGVFQVMAF GVRALDKKDIDASYMGKLAKIATAEIISSKELNADWQRAAASLLVSIGSHLPDLMIEE IFLHLSGPSSALPAMVQILADFASADAMQFTPRLKGVLSRVLPILGNVRDAHRPIFAN AFKCWCQAVWQYNVDFPSDSPLDGDVMSFLNSAFELLLRVWAASRDLKVRISSVEALG QMVGLITRTQLKAALPRLVPTILELYKREQDIALIATYSLYNLLNASLLSETGPPLLD FEELTVILSTLLPVICMNNDSKEHSDFSVGLKTYNEVQRCFLTVGSVYPEDLFTFLLN KCRLKEEPLTFGALCVLKHLLPRSSEAWHNKRPLLLDAVKSLLDEQNLGIGKALSELI VVMASHCYLVGPYAELFVEYLVCHCALSEHDRHDLESSQVKIGSVCPTELRAICEKGL LLLTITIPEMEHILWPFLLKMIIPQAYTGAVATVCRCIAELCRHRSSYNNNMLSDCKA RSDIPNPEELFARLVVLLHNPLAREQLATQILTVLCYLAPLFPRNINLFWQDEIPKMK AYVSDPEDLELDPSYQETWDDMIINFLAESLDVIQDTDWVISLGNAFTKQYSLYAPDD EHSALLHRGLGILLQKVNDRGYVRGKIDWMYKQANIAIPTNRLGLAKAMGLVAASHLD AVLDKLKDILDNVGQSIFQRFLAFFSESYRTEDSDDVHAALALMYGYAARYAPSMVIE ARIDALVGTNMLSRLLHVHHPTAKQAVITAIDLLGRAVINAAENGAPFPLKRRDQLLD YILTLMGRDETDGFADSSLELLHTQALALNACTTLVSVEPKLTIETRNHVMKATLGFF ALPNDPIDVINPLIDNLITLLCAILLTSGEDGRSRAEQLLHILRQIDQYVSSSVEYQR RRGCLAVYEMLVKFRMLCVSGYCALGCRGSCTHSKQIDRTLHGNFSNLPSAFVLPSRE ALSLGDRVIMYLPRCADTNSEVRKISAQILDQLFSISLSLPRPLGSSVGGDIELSYGA LSSLEDVIAILRSDASIDPSEVFNRIVASVCVLLTKDELVGTLHGCMPAICDKIKQSA EGAIQAVIEFVTKRGIELSETDVSRTTQSLLSAVVHVTEKQLRLEVLGAISSLSENTN AKIVFNEVLAAAGRDIVTKDISRLRGGWPMQDAFHAFSQHIVLSVLFLEHLISVLNQT HFTKSDPGKGENSSLLSETQLEDEILQAAIFALTAFFKGGGKVGKRAVEQSYSSVLAA LILQFGSCHGLASSGQHEPLRALLTSFQAFCECVGDLEMGKFLARDGEQNEKEKWINL IGDLAGCISIKRPKEVQNICKIFTKSLNRQEKTQREAAAAALSEFVCYSSGFSSLLEE MVEVLCRHVSDESPAVRCLCLRGLVKIPSVHIYQYTNQVLGVILSLLDDLDESVQLTA VSCLLTISMNVKMRADAFAAFGALSNYGVGAHKDAFIEQIHATLPRLILHLHDDDLAV RHACRNTLKRFATLMEIEGLLALFNSHSINSDHRDYEDFVRDFTRQFVQHLSSRVDTY MVSTIQAFDAPWPIIQANAIYVSSSILSLSNDQHILALYFTQVFGLLVSKMSRSADAV VRATSSSAFGLLLKSTNSISWRVARLERADSGRKGHDSESAKK" CDS complement(join(3813597..3813776,3813863..3813970, 3814214..3814307,3814396..3814481,3814587..3814658, 3815143..3815241,3817093..3817167,3817266..3817379, 3819414..3819519,3819679..3819779,3819889..3819984, 3820093..3820153,3820258..3820380,3820462..3820643, 3821249..3821380,3821523..3821595,3821730..3821863, 3821949..3822023,3822127..3822255,3822406..3822515, 3822597..3822835,3823852..3823952,3824054..3824134, 3824960..3825105,3825520..3825601,3825977..3826112, 3826500..3826579,3826654..3826783,3828072..3828193, 3828466..3828555,3829092..3829151,3829632..3829706, 3829798..3829896,3830104..3830169,3830277..3830366, 3830727..3830849,3830943..3831042,3831116..3831183, 3831394..3831471,3831601..3831690,3832584..3832689, 3832919..3833022,3833376..3833439,3833534..3833612, 3834103..3834198,3834315..3834405,3834634..3834705, 3835124..3835255,3835347..3835401,3835480..3835570, 3835663..3835705)) /locus_tag="TCM_022317" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30078.m002241" /codon_start=1 /product="ARM repeat superfamily protein isoform 1" /protein_id="EOY07999.1" /db_xref="TAIR:AT2G36810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IP13" /translation="MASSSSIGGSLPAPEAVQVIVSSLADESPMVREASMASLKDISP LNPLLVLDCCSAVSRGGRRRFGNMAGVFQVMAFGVRALDKKDIDASYMGKLAKIATAE IISSKELNADWQRAAASLLVSIGSHLPDLMIEEIFLHLSGPSSALPAMVQILADFASA DAMQFTPRLKGVLSRVLPILGNVRDAHRPIFANAFKCWCQAVWQYNVDFPSDSPLDGD VMSFLNSAFELLLRVWAASRDLKVRISSVEALGQMVGLITRTQLKAALPRLVPTILEL YKREQDIALIATYSLYNLLNASLLSETGPPLLDFEELTVILSTLLPVICMNNDSKEHS DFSVGLKTYNEVQRCFLTVGSVYPEDLFTFLLNKCRLKEEPLTFGALCVLKHLLPRSS EAWHNKRPLLLDAVKSLLDEQNLGIGKALSELIVVMASHCYLVGPYAELFVEYLVCHC ALSEHDRHDLESSQVKIGSVCPTELRAICEKGLLLLTITIPEMEHILWPFLLKMIIPQ AYTGAVATVCRCIAELCRHRSSYNNNMLSDCKARSDIPNPEELFARLVVLLHNPLARE QLATQILTVLCYLAPLFPRNINLFWQDEIPKMKAYVSDPEDLELDPSYQETWDDMIIN FLAESLDVIQDTDWVISLGNAFTKQYSLYAPDDEHSALLHRGLGILLQKVNDRGYVRG KIDWMYKQANIAIPTNRLGLAKAMGLVAASHLDAVLDKLKDILDNVGQSIFQRFLAFF SESYRTEDSDDVHAALALMYGYAARYAPSMVIEARIDALVGTNMLSRLLHVHHPTAKQ AVITAIDLLGRAVINAAENGAPFPLKRRDQLLDYILTLMGRDETDGFADSSLELLHTQ ALALNACTTLVSVEPKLTIETRNHVMKATLGFFALPNDPIDVINPLIDNLITLLCAIL LTSGEDGRSRAEQLLHILRQIDQYVSSSVEYQRRRGCLAVYEMLVKFRMLCVSGYCAL GCRGSCTHSKQIDRTLHGNFSNLPSAFVLPSREALSLGDRVIMYLPRCADTNSEVRKI SAQILDQLFSISLSLPRPLGSSVGGDIELSYGALSSLEDVIAILRSDASIDPSEVFNR IVASVCVLLTKDELVGTLHGCMPAICDKIKQSAEGAIQAVIEFVTKRGIELSETDVSR TTQSLLSAVVHVTEKQLRLEVLGAISSLSENTNAKIVFNEVLAAAGRDIVTKDISRLR GGWPMQDAFHAFSQHIVLSVLFLEHLISVLNQTHFTKSDPGKGENSSLLSETQLEDEI LQAAIFALTAFFKGGGKVGKRAVEQSYSSVLAALILQFGSCHGLASSGQHEPLRALLT SFQAFCECVGDLEMGKFLARDGEQNEKEKWINLIGDLAGCISIKRPKEVQNICKIFTK SLNRQEKTQREAAAAALSEFVCYSSGFSSLLEEMVEVLCRHVSDESPAVRCLCLRGLV KIPSVHIYQYTNQVLGVILSLLDDLDESVQLTAVSCLLTILDSSPNDAVEPILLNLSV RLRNLQISMNVKMRADAFAAFGALSNYGVGAHKDAFIEQIHATLPRLILHLHDDDLAV RHACRNTLKRFATLMEIEGLLALFNSHSINSDHRSDYEDFVRDFTRQFVQHLSSRVDT YMVSTIQAFDAPWPIIQANAIYVSSSILSLSNDQHILALYFTQVFGLLVSKMSRSADA VVRATSSSAFGLLLKSTNSISWRVARLERADSGRKGHDSESAKK" CDS complement(join(3813963..3813970,3814213..3814304, 3814396..3814481,3814587..3814661,3815143..3815241, 3817266..3817379,3819414..3819519,3819679..3819779, 3819889..3819984,3820093..3820153,3820258..3820380, 3820462..3820643,3821249..3821380,3821523..3821595, 3821730..3821863,3821949..3822023,3822127..3822255, 3822406..3822515,3822597..3822835,3823852..3823952, 3824054..3824134,3824960..3825105,3825520..3825601, 3825977..3826112,3826500..3826579,3826654..3826783, 3828072..3828193,3828466..3828555,3829092..3829151, 3829632..3829706,3829798..3829896,3830104..3830169, 3830277..3830366,3830727..3830837)) /locus_tag="TCM_022317" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30078.m002241" /codon_start=1 /product="ARM repeat superfamily protein isoform 3" /protein_id="EOY08001.1" /db_xref="TAIR:AT2G36810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HKD5" /translation="MASHCYLVGPYAELFVEYLVCHCALSEHDRHDLESSQVKIGSVC PTELRAICEKGLLLLTITIPEMEHILWPFLLKMIIPQAYTGAVATVCRCIAELCRHRS SYNNNMLSDCKARSDIPNPEELFARLVVLLHNPLAREQLATQILTVLCYLAPLFPRNI NLFWQDEIPKMKAYVSDPEDLELDPSYQETWDDMIINFLAESLDVIQDTDWVISLGNA FTKQYSLYAPDDEHSALLHRGLGILLQKVNDRGYVRGKIDWMYKQANIAIPTNRLGLA KAMGLVAASHLDAVLDKLKDILDNVGQSIFQRFLAFFSESYRTEDSDDVHAALALMYG YAARYAPSMVIEARIDALVGTNMLSRLLHVHHPTAKQAVITAIDLLGRAVINAAENGA PFPLKRRDQLLDYILTLMGRDETDGFADSSLELLHTQALALNACTTLVSVEPKLTIET RNHVMKATLGFFALPNDPIDVINPLIDNLITLLCAILLTSGEDGRSRAEQLLHILRQI DQYVSSSVEYQRRRGCLAVYEMLVKFRMLCVSGYCALGCRGSCTHSKQIDRTLHGNFS NLPSAFVLPSREALSLGDRVIMYLPRCADTNSEVRKISAQILDQLFSISLSLPRPLGS SVGGDIELSYGALSSLEDVIAILRSDASIDPSEVFNRIVASVCVLLTKDELVGTLHGC MPAICDKIKQSAEGAIQAVIEFVTKRGIELSETDVSRTTQSLLSAVVHVTEKQLRLEV LGAISSLSENTNAKIVFNEVLAAAGRDIVTKDISRLRGGWPMQDAFHAFSQHIVLSVL FLEHLISVLNQTHFTKSDPGKGENSSLLSETQLEDEILQAAIFALTAFFKGGGKVGKR AVEQSYSSVLAALILQFGSCHGLASSGQHEPLRALLTSFQAFCECVGDLEMGKFLARD GEQNEKEKWINLIGDLAGCISIKRPKEVQNICKIFTKSLNRQEKTQREAAAAALSEFV CYSSGFSSLLEEMVEVLCRHVSDESPAVRCLCLRGLVKIPSVHIYQYTNQVLGVILSL LDDLDESVQLTAVSCLLTISMNVKMRADAFAAFGALSNYGVGAHKDAFIEQQIHATLP RLILHLHDDDLAVRHACRNTLKRFATLMEIEGLLALFNSHSINSDHRDYEDFVRDFTR QFVQHLSSRVDTYMVSTIQGF" mobile_element complement(3835094..3835128) /note="source:scaffold_3_CACTA_0382 1856 1890" /mobile_element_type="transposon:TIR/CACTA" gene complement(3836170..3840826) /locus_tag="TCM_022318" /note="dbxref CacaoGD:Thecc1EG022318" mRNA complement(join(3836170..3836806,3836893..3836987, 3837784..3837880,3837966..3838022,3838432..3838474, 3838587..3838675,3839231..3839357,3839451..3839673, 3840312..3840826)) /locus_tag="TCM_022318" /product="Tudor/PWWP/MBT superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30078.m002242" /inference="similar to AA sequence:ricco:30078.m002242" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00470t00002" mRNA complement(join(3836550..3836806,3836893..3836987, 3837784..3837880,3838432..3838474,3838587..3838675, 3839231..3839354,3839451..3839673,3840312..3840713)) /locus_tag="TCM_022318" /product="Tudor/PWWP/MBT superfamily protein, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:30078.m002242" /inference="similar to AA sequence:ricco:30078.m002242" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:PASA:2:TSA:puevd3b021603t1a2; inference alignment:Newbler:10:TSA:cgbaB_g00470t00002" mRNA complement(join(3836550..3836806,3836893..3836987, 3837784..3837880,3837966..3838022,3838432..3838474, 3838587..3838675,3839231..3839354,3839451..3839673, 3840312..3840610)) /locus_tag="TCM_022318" /product="Tudor/PWWP/MBT superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30078.m002242" /inference="similar to AA sequence:ricco:30078.m002242" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00470t00002; inference alignment:Newbler:10:TSA:cgbaB_g00470t00002" CDS complement(join(3836711..3836806,3836893..3836987, 3837784..3837880,3838432..3838474,3838587..3838675, 3839231..3839354,3839451..3839673,3840312..3840465)) /locus_tag="TCM_022318" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30078.m002242" /codon_start=1 /product="Tudor/PWWP/MBT superfamily protein, putative isoform 3" /protein_id="EOY08004.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S0C5" /translation="MTKKKAPGKKKQKIKELNHIDNVPQFTKLSRKAASKAKRSSSSS PASPSTPGSLPECSYDRDEASSVTLTSFDDKKDGRKKLHDSVYCRKSWGKRPGFELNF YEFPVVESVALNKVSDPCSGRIVQKVVEQDSDKKKLKVTGSNGVCITPGNVVWAKTAC QVWWPAEIIGQRSILADSRIQHNEEHVLVKFYGKHNSAWVNAARDLSMLEDALVQRKE HIKSCRQLPRSHDSSSHSDQQDRKSGKWTSSTSSKTGSNLVKQGGSKKEPKPTIHLDD ATFPSKSAKGARRIKIMRYLGLTAPIGSPF" CDS complement(join(3836711..3836806,3836893..3836987, 3837784..3837880,3837966..3838022,3838432..3838474, 3838587..3838675,3839231..3839354,3839451..3839673, 3840312..3840465)) /locus_tag="TCM_022318" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30078.m002242" /codon_start=1 /product="Tudor/PWWP/MBT superfamily protein, putative isoform 2" /protein_id="EOY08003.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S0C5" /translation="MTKKKAPGKKKQKIKELNHIDNVPQFTKLSRKAASKAKRSSSSS PASPSTPGSLPECSYDRDEASSVTLTSFDDKKDGRKKLHDSVYCRKSWGKRPGFELNF YEFPVVESVALNKVSDPCSGRIVQKVVEQDSDKKKLKVTGSNGVCITPGNVVWAKTAC QVWWPAEIIGQRSILADSRIQHNEEHVLVKFYGKHNSAWVNAARDLSMLEDCFEERSC NPMENFQDALKQALVQRKEHIKSCRQLPRSHDSSSHSDQQDRKSGKWTSSTSSKTGSN LVKQGGSKKEPKPTIHLDDATFPSKSAKGARRIKIMRYLGLTAPIGSPF" CDS complement(join(3836711..3836806,3836893..3836987, 3837784..3837880,3837966..3838022,3838432..3838474, 3838587..3838675,3839231..3839357,3839451..3839673, 3840312..3840465)) /locus_tag="TCM_022318" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30078.m002242" /codon_start=1 /product="Tudor/PWWP/MBT superfamily protein, putative isoform 1" /protein_id="EOY08002.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S0C5" /translation="MTKKKAPGKKKQKIKELNHIDNVPQFTKLSRKAASKAKRSSSSS PASPSTPGSLPECSYDRDEASSVTLTSFDDKKDGRKKLHDSVYCRKSWGKRPGFELNF YEFPVVESVALNKVSDPCSGRIVHRKVVEQDSDKKKLKVTGSNGVCITPGNVVWAKTA CQVWWPAEIIGQRSILADSRIQHNEEHVLVKFYGKHNSAWVNAARDLSMLEDCFEERS CNPMENFQDALKQALVQRKEHIKSCRQLPRSHDSSSHSDQQDRKSGKWTSSTSSKTGS NLVKQGGSKKEPKPTIHLDDATFPSKSAKGARRIKIMRYLGLTAPIGSPF" gene complement(3840968..3842301) /locus_tag="TCM_022319" /note="dbxref CacaoGD:Thecc1EG022319" mRNA complement(join(3840968..3841694,3841983..3842301)) /locus_tag="TCM_022319" /product="P21, putative" /inference="alignment:exonerate- protein:2:ricco:30078.m002243" /inference="similar to AA sequence:ricco:30078.m002243" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2417t1" CDS complement(join(3841009..3841694,3841983..3842031)) /locus_tag="TCM_022319" /note="dbxref ricco:30078.m002243" /codon_start=1 /product="P21, putative" /protein_id="EOY08005.1" /db_xref="TAIR:AT4G36010.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S0C6" /translation="MANKAVFSLFLLLVISGWQVQSDITFNFDNECSFSVWLAASPSI GDGDPERGPGTLEIFSMPDPWTGSIWARTKCSYDASLNNFTCETGDCGSGLVQCQSPP PKPPATLLNFGINQNVVTYEVNLNHGFNVPVRIKPVGGSLVGGSGPCPVVDCIKNLKD VCPSPLTALNQNGVYVGCNSPCDALQDPKYCCTGASAGQACQPNEYSKTFKQVCQLAH TYPGDNDPPIYKCSGATSYDVTFCPL" gene 3842533..3845917 /locus_tag="TCM_022320" /note="dbxref CacaoGD:Thecc1EG022320" mRNA join(3842533..3842633,3843199..3843292,3843370..3843488, 3843598..3843719,3843837..3843916,3843998..3844081, 3844188..3844298,3844643..3845440,3845533..3845917) /locus_tag="TCM_022320" /product="Laccase 11" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033501001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006868t1" /inference="similar to AA sequence:ricco:30078.m002327" /note="quality class is strong, express is none, homology is ortholog strong, intron is none, protein is complete" CDS join(3842592..3842633,3843199..3843292,3843370..3843488, 3843598..3843719,3843837..3843916,3843998..3844081, 3844188..3844298,3844643..3845440,3845533..3845663) /locus_tag="TCM_022320" /note="dbxref ricco:30078.m002327; paralog of Thecc1EG006868t1" /codon_start=1 /product="Laccase 11" /protein_id="EOY08006.1" /db_xref="TAIR:AT5G03260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TIE4" /translation="MTNSDEAEVLASPLPLHLLYLMNYSIANSELTTLSINLPSISAT IKRRQMPLHLDSYLGSLFLIFGFASFFTFPAEAAVKKYQFDIKVKNVSRLCPAKPIVT VNGRFPGPTIYVREGDRVLVNVNLHGSKQFHNGWADGPAYITQCPIKTGHMYGAIVIM PKEGTPYPFPQPHRETKIILDVEALVNQANKLGLPPQTSDAHIINGKLGPLFPCSEKL YTKAFTTRVILIALGQTPNVLVRADQPPSRYFKAARPFMDAPVPVDNKTVTAILEYKD ISKTVLPSMPKLLAPNNTKVTLHYNKKLKSLNTRQFPAKVPLKVDRHLFYTIGLGANP CSTCQNGTQLTASLNNIAFVMLKIGLLQAHYFNIKGVFRIDFPDHPPIPFKYTGVPLT ANLGISVGIRLSKVAFNSTIELVLQDTNLLTVESHPFHLHGFNFFVVGSGVGNFNPSK DPAKFNLVDPPKRNTVGGPTGGWIAIRFRPDNPRVWLMHCHLELHTMWGLNMAFVVEN GQSPRKSIVPPPRDLPPC" mobile_element 3848109..3848299 /note="source:scaffold_5_CACTA_0614 1682 1916" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3854413..3854498) /note="source:INTACT229_F177_scaffold_9-int 13672 13761" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3855359..3855476) /note="source:CACAO_M_E33977_F20_scaffold_4 16863 16974" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3857631..3857930) /note="source:scaffold_9_CACTA_0924 7965 8297" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3858712..3859018) /note="source:scaffold_9_CACTA_0924 6938 7236" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3860693..3861429) /note="source:scaffold_4_CACTA_0482 16779 17506" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3861607..3861727 /note="source:INTACT45_F20_scaffold_6-int 215 336" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 3862609..3864995 /locus_tag="TCM_022321" /note="dbxref CacaoGD:Thecc1EG022321" mRNA 3862609..3864995 /locus_tag="TCM_022321" /product="UDP-glucosyl transferase 73C6" /inference="alignment:exonerate- protein:2:ricco:30078.m002239" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022335t1" /inference="similar to AA sequence:ricco:30078.m002239" /note="quality class is strong, express is medium, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2135t1" CDS 3862633..3864105 /locus_tag="TCM_022321" /note="dbxref ricco:30078.m002239; paralog of Thecc1EG022335t1" /codon_start=1 /product="UDP-glucosyl transferase 73C6" /protein_id="EOY08007.1" /db_xref="TAIR:AT2G36780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZQ94" /translation="MASKLDQLHFVLIPLMSPGHLLPMTDMARLLAEHGVIVSIVTTP LNTIRFKSTIERAVESGLHIRLLQLQFPSDPLGLPEGCENMDQLPSRDLIKNFFKAAS MLQQPFEQLFNELQPRPSCIISGKNLPWTVDTALKFNVPRIFFDGMGCFSFSCTHNLE VSKVHETMSKFESFLVPGLPHRIELTKAKLPENLNPGSNDLTNMRSNIRAVELIADGI VVNTFEELESEYVKEYKSVKGDNVWCIGPLSACNKLNSDKAERGQKASIDDNQCLKPW LDSKKPGSVIYACLGSISGLTTWQLVELGLGLEASNQAFIWVIRGGKKSEGLEKWIAE EGFEERVKDRGLIIGGWAPQIWILSHPAIGGFLTHCGWNSTMEGICAGVPIVACPLFA EQFLNEKLVVEVLGIGASVGVEAAVAWGMEDKFGLLMKREQVKQAIDKVMDKGNPGEE RRKRAKELGMRATKAIEEGGSSYQNMEMLIKFVLERTRGG" mobile_element 3865196..3868891 /note="source:INTACT648_F285_scaffold_10-int 59 3803" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3869112..3870114 /note="source:INTACT229_F177_scaffold_9-int 12925 13954" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3872974..3873233 /note="source:CACAO_M_S_E5285_F300_scaffold_1 13582 13851" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 3873026..3873997 /note="source:INTACT570_F260_scaffold_5-int 8732 9685" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3873720..3874865 /note="source:CACAO_Mariner_E180_scaffold_6 7090 8273" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(3874133..3875111) /note="source:CACAO_M_S_E17777_F2_scaffold_3 2898 3895" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3874564..3875478) /note="source:scaffold_4_CACTA_0494 1798 2745" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3874798..3875702 /note="source:scaffold_3_CACTA_0384 560 1497" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3875701..3875782 /note="source:scaffold_4_CACTA_0483 6648 6730" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3876756..3876879) /note="source:scaffold_4_CACTA_0493 2261 2385" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3880023..3882616 /note="source:INTACT374_F74_scaffold_9-int 1 2591" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3882939..3882994 /note="source:CACAO_M_E42343_F106_scaffold_5 6708 6764" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3882943..3882957) /note="source:CACAO_M_E14113_F106_scaffold_3 13871 13898" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 3882958..3883055 /note="source:CACAO_PIF_E119_scaffold_3 2596 2687" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 3883023..3883098 /note="source:CACAO_PIF_E119_scaffold_3 2595 2665" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(3883056..3883086) /note="source:CACAO_M_E14113_F106_scaffold_3 13806 13870" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(3890549..3893208) /note="source:CACAO_M_E69780_F2_scaffold_9 1654 4335" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3891920..3893361 /note="source:CACAO_M_E34351_F2_scaffold_4 1298 2758" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 3897649..3898843 /locus_tag="TCM_022327" /note="dbxref CacaoGD:Thecc1EG022327" mRNA join(3897649..3898053,3898160..3898843) /locus_tag="TCM_022327" /product="UDP-glucosyl transferase 73C1-like protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022321t1" /inference="similar to AA sequence:ricco:30078.m002239" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS join(3897843..3898053,3898160..3898599) /locus_tag="TCM_022327" /note="dbxref ricco:30078.m002239; paralog of Thecc1EG022321t1" /codon_start=1 /product="UDP-glucosyl transferase 73C1-like protein" /protein_id="EOY08008.1" /db_xref="TAIR:AT2G36750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BKZ9" /translation="MLLSLVSTFDFSNSKFHQIRLASLPEGSENMDQLPTRDLVKKFF KAASMLKQPFEQLFNELQSRPSCIIPEASKVHETMSKFESFLVPGLPHRMELTKAQLP ENLNPGSNDLTNMRGNIRAVELIADGIVVITFEELESEYVKEYKIVKGDNVWCIGPLS ACNKLNSDKAERGQKASIDDNQCLKPWLDSKKPVSVIMPVLVAYLAAQLGNSWSLF" mobile_element 3898783..3905596 /note="source:CACAO_M_E34404_F23_scaffold_5 1 6814" /mobile_element_type="retrotransposon:LTR/Copia" gene 3905604..3919634 /locus_tag="TCM_022329" /note="dbxref CacaoGD:Thecc1EG022329" mRNA join(3905604..3905964,3906853..3906899,3907086..3907308, 3907388..3908024,3919602..3919634) /locus_tag="TCM_022329" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.35 coverage" CDS join(3905760..3905964,3906853..3906899,3907086..3907308, 3907388..3907746) /locus_tag="TCM_022329" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08009.1" /translation="MEDKFGLLMKRKQIKQAIDKVMDKGNEGEERRQRAKEFGKRATK AIEEGGSSYENMEMLIKFVLERTRGRLLDGRMLQNCGRRMVKSPGVCSWNWRKLLKLR AKAKILIQHLTSNGEGTFLWYDAWHLSGLLLDKFGMKLVYDSAISDEAKVANVIKDVA DKQDVIIWLASSSRKFTTSDAWDSLKDKKAANVPWHELICFRFHIPKFIFIAWLHILN RFKYFLRNSVMGDFLAFSYLCSLQFRIGKRTPLVFTCSYSQAVWRRVLQTSGNQRSLG D" mobile_element complement(3909141..3909311) /note="source:scaffold_9_CACTA_0941 328 513" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(3911828..3911844) /note="source:INTACT359_F73_scaffold_2-int 2719 2734" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3911845..3914638 /note="source:CACAO_M_E34405_F244_scaffold_5 1 2794" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3922409..3922753 /note="source:CACAO_Mutator_E1888_scaffold_9 7437 7798" /mobile_element_type="transposon:TIR/Mutator" mobile_element 3926015..3929490 /note="source:CACAO_PIF_E62_scaffold_2 7071 10658" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 3929047..3929683 /note="source:CACAO_Mutator_E592_scaffold_3 7208 7814" /mobile_element_type="transposon:TIR/Mutator" mobile_element 3929665..3932391 /note="source:CACAO_Mutator_E592_scaffold_3 8284 11040" /mobile_element_type="transposon:TIR/Mutator" mobile_element 3930947..3932555 /note="source:CACAO_PIF_E62_scaffold_2 12410 13942" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(3931044..3931789) /locus_tag="TCM_022331" /note="dbxref CacaoGD:Thecc1EG022331" mRNA complement(3931044..3931789) /locus_tag="TCM_022331" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033546t1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.88 coverage" CDS complement(3931400..3931789) /locus_tag="TCM_022331" /note="paralog of Thecc1EG033546t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08010.1" /translation="MWAQVVSRKEPYTTESCSAHHLNSALDRLVHNFLASTLQGRISC LRHVSVEDLWMMETIESQFGVNIAEYMIMRIRQVVMREETTLPYGNISSTLVKKKGIW SNRYLANWTSHKPRNLSFRWLVKGDMT" mobile_element 3932510..3932800 /note="source:CACAO_Mutator_E1320_scaffold_6 2002 2251" /mobile_element_type="transposon:TIR/Mutator" mobile_element 3932625..3933069 /note="source:CACAO_PIF_E62_scaffold_2 16140 16588" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 3933172..3933253 /note="source:CACAO_PIF_E62_scaffold_2 13777 13858" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 3933220..3933261 /note="source:CACAO_Mutator_E1320_scaffold_6 80 121" /mobile_element_type="transposon:TIR/Mutator" mobile_element 3933254..3933304 /note="source:CACAO_PIF_E119_scaffold_3 6778 6829" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 3933261..3939876 /note="source:CACAO_Mutator_E1018_scaffold_5 1 6616" /mobile_element_type="transposon:TIR/Mutator" gene 3939846..3943230 /locus_tag="TCM_022334" /note="dbxref CacaoGD:Thecc1EG022334" mRNA join(3939846..3939942,3940446..3942301,3943152..3943230) /locus_tag="TCM_022334" /product="Don-glucosyltransferase 1, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g34420.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025454t1" /inference="similar to AA sequence:ricco:29579.m000198" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07053t00001" CDS 3940555..3942060 /locus_tag="TCM_022334" /note="dbxref ricco:29579.m000198; paralog of Thecc1EG025454t1" /codon_start=1 /product="Don-glucosyltransferase 1, putative" /protein_id="EOY08011.1" /db_xref="TAIR:AT2G36800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZQ94" /translation="MGSLSDQLHFVLFPFMAQGHLIPMVDIGRLLAQRNVIVTIVTTP HNAGRVHKSVANATESGHPIRLVQLQFPFKVVGLPEGCENMDMLSSSVENCFKFFSAA NMMEEAAQKLFEKLTPRPNCIISDMCLYYTSRIASKFQVPRIAFHGFCCFCLLCLHNI RSSKILESITSDSEYFIVPGLSDKVEFTKVQLPLNYDETWKEILEPMGEADQTSYGIV INTFEELESSYVKEYRKVRKDKAWCIGPVSLSHKDEQDKAQRGNTASINEHHCLKWLD SQEPSSVVYACLGSICNLRPLQMIELGLGLEASTKPFIWVIRGNDTSKEVEKWIKEEG FEERTKGRGLVILGWAPQVLILSHPAIGGFLTHCGWNSTIEGISAGVPLITWPLFADQ FSNEKLVVQMLKIGVSLGVKKPLLWGQEEKAGIMLKKEDVKNAVDKLMDEGKEATERR KRAKEFGEKAKKAVEVGGSSYVNMTLLIQDIMQQSHKTCWKSGPTSHAEEI" mobile_element 3942301..3942555 /note="source:scaffold_4_CACTA_0482 16794 17048" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3942603..3942627 /note="source:CACAO_on_E565_scaffold_5 13454 13622" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 3942628..3943011 /note="source:scaffold_4_CACTA_0482 17116 17490" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3943012..3943041 /note="source:CACAO_on_E565_scaffold_5 13623 13846" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 3944107..3946239 /locus_tag="TCM_022335" /note="dbxref CacaoGD:Thecc1EG022335" mRNA 3944107..3946239 /locus_tag="TCM_022335" /product="UDP-Glycosyltransferase superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30078.m002216" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030167t1" /inference="similar to AA sequence:ricco:30078.m002239" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc2604t1" CDS 3944486..3945967 /locus_tag="TCM_022335" /note="dbxref ricco:30078.m002239; paralog of Thecc1EG030167t1" /codon_start=1 /product="UDP-Glycosyltransferase superfamily protein" /protein_id="EOY08012.1" /db_xref="TAIR:AT2G36780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZQ94" /translation="MSPQFPELHFVLIPLMCPGHLIPMVDIGRLLAQHGVTVTIVTTP LNATRFKSIIDRDIASGIQIQLLQLRFPCIEAGLPEGCENVDALPSRHLSKNFMDAVG KLQHPIEQFLEETQPKPSCIISDGHIPWTFDVAQKFKIPRLAFDGTSCFTLTCSHFIG MSKIHEKVSDDLESFVVPGLPDRIELTKAQLPTDFNPGSIVLKDKEEHMRVADMASYG LVVNSFEELESGYIEEYRKAKGDKIWCIGPVSLYNKGKLDKAQRGNKASVEVIQCLQW LDSWPQNSVVYASLGTLSCVAPMQLTEMALGLEASNRPFIWVIREGYKSDEFKKWLSE EGFEERTKGRGFLVHGWAPQLSILSHPAVGGLLTHCGWNSVLEGLCAGLPMITWPLLA DQFFNEKLVVQILRIGERVGAEIAMKWGEEEKYGVMVKREQIMKAINLVMDAGEEGEE RRKRAMELGVLAKKAFENEGSSYLNVKRLIKDIIQISGRKAEA" gene 3946964..3949983 /locus_tag="TCM_022336" /note="dbxref CacaoGD:Thecc1EG022336" mRNA join(3946964..3947510,3947673..3949983) /locus_tag="TCM_022336" /product="UDP-Glycosyltransferase superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30078.m002216.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022338t1" /inference="similar to AA sequence:ricco:30078.m002216" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc2714t1" CDS 3948223..3949695 /locus_tag="TCM_022336" /note="dbxref ricco:30078.m002216; paralog of Thecc1EG022338t1" /codon_start=1 /product="UDP-Glycosyltransferase superfamily protein, putative" /protein_id="EOY08013.1" /db_xref="TAIR:AT2G36780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZQ94" /translation="MALNSFQPHFVLIPFMCQGHLIPLIDIARLLAERNVIVTIITTP QNAARLSISIDHAIESGLPIRVLQLHFPAAEAGLPEGCETLDNLPSMHLMSNFYSALS MLQQPLETMFEELKPRPCCIIHDRNFTWIAEIASKFQIPRISFDGKSCFTLLCCHNIS TSKVHECVSDGEPFVVPGLSDRIEFTTGQLPGNLNPGFNMKETAKKIIAAEEEAYGLI VNSFEELEAEYVESYKKLKKQKVWCVGPVSLCNKDNFDKAQRGKEALTDENQCLKWLD SWPPSSVIYVCFGSLNRLTPPQLIELGLALEASNRPFIWVIRGGYKKGEMEKWLAEDG FEERIKGQGLLIRGWAPQVLILSHPSIGGFLTHSGWNSTLEGICAGVPMLTWPLFAEQ FLNEKLLVQILKVGVRVGVEVAVQMGEEEFGVLVKREDVKKAVESLMDEGEEGEDRRK RARKLAMVAKKAVEEGGSSYFNMTLLIEDIVQQATSPASA" mobile_element complement(3950748..3950917) /note="source:scaffold_6_CACTA_0700 6860 7038" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3952129..3952293 /note="source:scaffold_6_CACTA_0701 2699 2872" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3952746..3956007 /note="source:CACAO_M_E34406_F19_scaffold_5 1 3262" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 3955755..3960083 /locus_tag="TCM_022338" /note="dbxref CacaoGD:Thecc1EG022338" mRNA join(3955755..3956191,3958301..3960083) /locus_tag="TCM_022338" /product="UDP-Glycosyltransferase superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30078.m002216.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022336t1" /inference="similar to AA sequence:ricco:30078.m002216" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05577t00001" CDS 3958481..3959968 /locus_tag="TCM_022338" /note="dbxref ricco:30078.m002216; paralog of Thecc1EG022336t1" /codon_start=1 /product="UDP-Glycosyltransferase superfamily protein, putative" /protein_id="EOY08014.1" /db_xref="TAIR:AT2G36780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZQ97" /translation="MNMESCEPHFLFVPLMCPGHIIPLMDIARLLGERNVAVTMVITP LNATRFGSVIERALKSGLPINFLQLQFPSTEVGLPKGCESIDRLPSLDLVGKFLTAQS MLQEPLEEALQGMKPFPSCIVTDKNIPWIATTASKFQIPRILFDGTSSFTHICSHNLH KSMVYEHFSDSEPFVIPGLPHRIEFTKAQLPSSFNPGSNKDLMAFRQTVKASEAGAFG VLLNTFEELETEYVKAYREATGFKVWCIGPVSLCNREILDKAERGRIPAIDENQCMKW LDFQAAGSVIYVCFGTLNRIPSLQLIEIAIALEASNRPFIWVLREGYKREEMETWLDE VGYEERIKGRGLLIRGWASQVLILSHQAIGGFLTHCGWNSTLEGICAGVPMITWPLFA EQFYNEKLIVQVLDIGVGVGTQQVVMHFGENDKSGALVKAEDIKKAIDKLMDAGEEGE QRRKKAAELAATAEKAVAQGGSSYLNITLLIEDVMQKPKFNQTKF" mobile_element complement(3960787..3961645) /note="source:INTACT525_F2_scaffold_2-int 3264 3920" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3961647..3963681) /note="source:CACAO_M_E69958_F2_scaffold_9 2866 4895" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3963660..3964330) /note="source:INTACT525_F2_scaffold_2-int 2227 2886" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3964318..3964506) /note="source:CACAO_M_E69923_F2_scaffold_9 1856 2043" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3964593..3966238) /note="source:CACAO_M_E34036_F2_scaffold_4 184 1857" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3966237..3966333 /note="source:CACAO_M_S_E17777_F2_scaffold_3 11817 11913" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3967029..3967093) /note="source:scaffold_5_CACTA_0584 1907 1971" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3969105..3970180 /note="source:scaffold_5_CACTA_0584 3562 4648" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3971662..3974983 /note="source:scaffold_6_CACTA_0701 1 3362" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3975713..3976257 /note="source:CACAO_M_E4753_F17_scaffold_2 7254 7822" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3976258..3976564 /note="source:scaffold_6_CACTA_0701 3360 3665" /mobile_element_type="transposon:TIR/CACTA" mobile_element 3976665..3977344 /note="source:scaffold_6_CACTA_0701 3649 4323" /mobile_element_type="transposon:TIR/CACTA" gene 3980156..3982250 /locus_tag="TCM_022340" /note="dbxref CacaoGD:Thecc1EG022340" mRNA 3980156..3982250 /locus_tag="TCM_022340" /product="UDP-glucosyl transferase 73D1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s10880.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022336t1" /inference="similar to AA sequence:ricco:30078.m002219" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc3643t1" CDS 3980726..3982198 /locus_tag="TCM_022340" /note="dbxref ricco:30078.m002219; paralog of Thecc1EG022336t1" /codon_start=1 /product="UDP-glucosyl transferase 73D1" /protein_id="EOY08015.1" /db_xref="TAIR:AT3G53150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SCP6" /translation="MASIAKQLHFVLIPLMAQGHMIPMVDIARLLAERGVIVSLITTP HNAFRFDEVIQRASESGLQIRLVKIPFPCQEVGLPTGCENLDTLSSRDLLKKFYNALG MLQEPLEQFLKQQKPLPSCIISDKCLSWTSKTAQRFNIPRIVFHGMGCFSLLSSHNVK LHKAHLSVASDSEPFVVPGLPQKVEITRAQLPGAFVSLPDLDDVRNKMQEAEMTAYGV VINSFNELEHGCVEAYQKAIKKKVWAIGPVSLCNRTNLDKFERGNKASINEEKCLKWL DSMKPRSVIYACLGSLCRLVPAQLIELGLGLEASKQPFIWVVKTGDQRANDELEKWLS EHNFEERIKGRGLLIKGWGPQLLILSHPAIRGFLTHCGWNSTIEAVCSGVPMITWPQF SEQFFNEKLIVEILKIGLRVGVEVPVRWGEEEKLGVLVKKEQVEKAIDMLMNGGEEGE KRRTRARELEAMARTAVGNGGSSYLNMTVLVQDILEKINQ" mobile_element 3985997..3987173 /note="source:CACAO_M_E34409_F73_scaffold_5 1 1177" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3987406..3988735 /note="source:CACAO_M_E34409_F73_scaffold_5 1178 2507" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 3990496..3994163 /note="source:INTACT365_F17_scaffold_9-int 1 3649" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(3993764..3994959) /note="source:INTACT35_F17_scaffold_5-int 3323 4576" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 3995306..3998393 /locus_tag="TCM_022341" /note="dbxref CacaoGD:Thecc1EG022341" mRNA join(3995306..3995764,3995956..3996292,3996380..3996444, 3997746..3998393) /locus_tag="TCM_022341" /product="O-methyltransferase family protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400015095" /inference="similar to AA sequence:Phytozome:POPTR_0006s12160.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g09117t00001" CDS join(3995396..3995764,3995956..3996292,3996380..3996444, 3997746..3998045) /locus_tag="TCM_022341" /codon_start=1 /product="O-methyltransferase family protein" /protein_id="EOY08016.1" /db_xref="Phytozome:POPTR_0006s12160.1" /db_xref="TAIR:AT3G53140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SCP7" /translation="MEDETADSRNKARLAILELANMMSVPMSLNAVVRLNVPDAIWQG GANTPLSATQILSRVLPSGGGDPENLQRILRMLTSYGVFAEHLDSECPERRFSLTDIG KTLVTDADGLSCAPYVLQHHQDALMRVWPLMHEAVLDPTSEPFVKVNGEAAYSYYGKK PEMNGLMQKAMSGVSVPFMRAILNSYDGFKGVKRLVDVGGSVGECLRMILQKHPHVEE GINFDLPEVVAKAPTIPGVSHVGGDMFKSIPSGDGIFMKWVLVTWTDDECKLIMENCY KALPVGGKLIACEPVLPKDSDDSHRTRALLEGDIFVMTIYRTKGKHRTEEEFKQLGLS AGFPHFRAFCFDDFYSVLEFQK" gene complement(3998531..4008461) /locus_tag="TCM_022342" /note="dbxref CacaoGD:Thecc1EG022342" mRNA complement(join(3998531..3998818,3999101..3999351, 4006729..4006935,4007352..4007523,4007676..4008461)) /locus_tag="TCM_022342" /product="Pectin lyase-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s12170.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002054t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s12170.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc48t11" CDS complement(join(3998671..3998818,3999101..3999351, 4006729..4006935,4007352..4007523,4007676..4008100)) /locus_tag="TCM_022342" /note="paralog of Thecc1EG002054t1" /codon_start=1 /product="Pectin lyase-like superfamily protein" /protein_id="EOY08017.1" /db_xref="Phytozome:POPTR_0006s12170.1" /db_xref="TAIR:AT2G36710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HKE8" /translation="MRIKTISFWLLAFLIPLFSILIALYTVPPPSKSSVTPDSHDSFE VARQSGEFLSLLTRMVSRHHHHHHHHHHHHHHHRGRRKHKCDHNKWTSSLISQYKVSL VLTVDSNGCANFSSVQQAIDVVPDSSPSKTLIVIYSGTYREKVVIHANKSNLIIQGEG FLKTAIEWNDTADSTGGTVYSSSVAIFAPNFTVYNISFKNTAPEPSPGETGKQAVALR IAGDQAAFYNCGFYGAQDTLLDDRGRHYFKGCFIQGSIDFIFGNARSLYEGCVIHSIA KEGTSGVGGCITAQARQSMNEQTGFSFVDCIIRGTGTVWLGRAWGAYATVVFSRTYMS DVVAPDGWNDWRDPTRDQTVLFGEYECLGPGANYTFRASYGKQLIEYEAAAYMNISYI DGNEWLQD" mobile_element 3999723..4005395 /note="source:CACAO_M_S_E52042_F309_scaffold_5 1 5673" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(4008537..4017971) /locus_tag="TCM_022344" /note="dbxref CacaoGD:Thecc1EG022344" mRNA complement(join(4008537..4009490,4009612..4009752, 4010176..4010269,4010360..4010416,4010530..4010594, 4011475..4011720,4011859..4011915,4012059..4012116, 4012289..4012499,4013373..4013539,4013631..4013683, 4013905..4013986,4014079..4014171,4014365..4014457, 4014664..4014756,4014902..4014994,4015145..4015237, 4015799..4015907,4016013..4016217,4016322..4016393, 4016520..4017530,4017625..4017971)) /locus_tag="TCM_022344" /product="Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain isoform 3" /inference="alignment:exonerate- protein:2:ricco:30078.m002221" /inference="similar to AA sequence:Phytozome:POPTR_0006s12180.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:PASA:2:TSA:puevd3b021629t1a2; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc60t9" mRNA complement(join(4008537..4009490,4009612..4009752, 4010176..4010269,4010360..4010416,4010530..4010594, 4011475..4011720,4011859..4011915,4012059..4012116, 4012289..4012499,4013373..4013539,4013631..4013683, 4013767..4013826,4013905..4013986,4014079..4014171, 4014365..4014457,4014664..4014756,4014902..4014994, 4015145..4015237,4015799..4015907,4016013..4016217, 4016322..4016393,4016520..4017530,4017625..4017971)) /locus_tag="TCM_022344" /product="Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain isoform 1" /inference="alignment:exonerate- protein:2:ricco:30078.m002221" /inference="similar to AA sequence:Phytozome:POPTR_0006s12180.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc60t9" mRNA complement(join(4008824..4009494,4009612..4009754, 4010176..4010269,4010360..4010416,4010530..4010594, 4011475..4011720,4011859..4011915,4012059..4012116, 4012289..4012499,4013373..4013539,4013631..4013686, 4013905..4013986,4014079..4014171,4014365..4014457, 4014664..4014756,4014902..4014994,4015145..4015237, 4015799..4015907,4016013..4016217,4016322..4016393, 4016520..4017530,4017625..4017844)) /locus_tag="TCM_022344" /product="Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain isoform 4" /inference="alignment:exonerate- protein:2:ricco:30078.m002221" /inference="similar to AA sequence:Phytozome:POPTR_0006s12180.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2641t2; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc60t9" CDS complement(join(4009359..4009490,4009612..4009752, 4010176..4010269,4010360..4010416,4010530..4010594, 4011475..4011720,4011859..4011915,4012059..4012116, 4012289..4012499,4013373..4013539,4013631..4013683, 4013905..4013986,4014079..4014171,4014365..4014457, 4014664..4014756,4014902..4014994,4015145..4015237, 4015799..4015907,4016013..4016217,4016322..4016393, 4016520..4017494)) /locus_tag="TCM_022344" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain isoform 3" /protein_id="EOY08020.1" /db_xref="Phytozome:POPTR_0006s12180.1" /db_xref="TAIR:AT2G36720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFT6" /translation="MKRELEFGLEGSLGPTRESLTQSQTQARSSTSCKRVKVTQVNGY IVYTRVKKSRINCRDEFSENLENKKFENCNEQINGVKECLVGEDQKNKTLIEVSHGNN NVIEDVIGGRPGNQNVAGENVLVKNVVDESLVVRDIGEGGPFVEASIEESRVIGENAI VGNLVVEEIGRDGRLVLQARLGEGSSYNLAMVMSKDERSNELGTCLVEEGGLGEASMQ IVDSSEGKTDLLLKTLRRSKRSLLRPKVEPLDSLECEQHTVVNVSVSSFGGEEAAEGS DLTTPRKKLELKMSKKIALNKCPMTVKELFDTGLLDGVPVVYMGTISSKTAGLRGIIT DGGILCSCSLCKGRRVVPPSQFEIHACKQYKRAAQYICFENGKSLLEVLRACRRRPLH TLEATIQNILSALPEQKCFTCRRCKGSFPVIHVGQIGPLCNSCVESKKSQCSTMSAPS GVARSQEPVLISHSSGSSSVGILPQSTSQWKMTRKSQEPVLMSQSFGSASSSVSPQNK SQWKKARKSSELDVTANSPHCASLCISSQNRSPWKTTRKLTKPGLFTKSLKSASVHIS SQDKAQWRIKKKPIKPVLMSKTLKGVSSPMYSPNGSQWKMTTKDQRLHKLVFEEDGLP DGTEVAYYARGQVSPSQFEAHAGWASRRKPYAYIYTSNGVSLHELAISLSKGRRYSAK DNDDACIICADGGNLLLCDGCPRAFHKECASLPTIPRGRWYCKYCQNMFMREKFVEHN ANAVAAGRILGVDAIEQITSRCIRIVKNIEAELSGCALCRACDFSKSGFGPRTILLCD QCEKEYHIGCLRTHKMADLREIPRGKWFCCSDCSRIHSILQKLLIREAEKLPDSLLDV IRKKYVEKGLDADINIDVRWRLLSGKFASPETRLLLSQAVGIFHECFDPIVDATTGRD LIPCMVYGRNLKGQEYGGMYCAVLTINSFVVSAGIIRVFGQEIAELPLVATSIANHGK GYFQLLFSCIERLLAFLNVKNLVLPAAEEAESIWTDKFGFKKLRPDQLGEYKKSCCQM VIFKGTSMLQKEVPPCRVVNSTEPTVSYNEVE" CDS complement(join(4009359..4009490,4009612..4009752, 4010176..4010269,4010360..4010416,4010530..4010594, 4011475..4011720,4011859..4011915,4012059..4012116, 4012289..4012499,4013373..4013539,4013631..4013683, 4013767..4013826,4013905..4013986,4014079..4014171, 4014365..4014457,4014664..4014756,4014902..4014994, 4015145..4015237,4015799..4015907,4016013..4016217, 4016322..4016393,4016520..4017494)) /locus_tag="TCM_022344" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain isoform 1" /protein_id="EOY08018.1" /db_xref="Phytozome:POPTR_0006s12180.1" /db_xref="TAIR:AT2G36720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFT6" /translation="MKRELEFGLEGSLGPTRESLTQSQTQARSSTSCKRVKVTQVNGY IVYTRVKKSRINCRDEFSENLENKKFENCNEQINGVKECLVGEDQKNKTLIEVSHGNN NVIEDVIGGRPGNQNVAGENVLVKNVVDESLVVRDIGEGGPFVEASIEESRVIGENAI VGNLVVEEIGRDGRLVLQARLGEGSSYNLAMVMSKDERSNELGTCLVEEGGLGEASMQ IVDSSEGKTDLLLKTLRRSKRSLLRPKVEPLDSLECEQHTVVNVSVSSFGGEEAAEGS DLTTPRKKLELKMSKKIALNKCPMTVKELFDTGLLDGVPVVYMGTISSKTAGLRGIIT DGGILCSCSLCKGRRVVPPSQFEIHACKQYKRAAQYICFENGKSLLEVLRACRRRPLH TLEATIQNILSALPEQKCFTCRRCKGSFPVIHVGQIGPLCNSCVESKKSQCSTMSAPS GVARSQEPVLISHSSGSSSVGILPQSTSQWKMTRKSQEPVLMSQSFGSASSSVSPQNK SQWKKARKSSELDVTANSPHCASLCISSQNRSPWKTTRKLTKPGLFTKSLKSASVHIS SQDKAQWRIKKKPIKPVLMSKTLKGVSSPMYSPNGSQWKMTTKDQRLHKLVFEEDGLP DGTEVAYYARGQRLLEGYKKGFGIFCRCCNCEVSPSQFEAHAGWASRRKPYAYIYTSN GVSLHELAISLSKGRRYSAKDNDDACIICADGGNLLLCDGCPRAFHKECASLPTIPRG RWYCKYCQNMFMREKFVEHNANAVAAGRILGVDAIEQITSRCIRIVKNIEAELSGCAL CRACDFSKSGFGPRTILLCDQCEKEYHIGCLRTHKMADLREIPRGKWFCCSDCSRIHS ILQKLLIREAEKLPDSLLDVIRKKYVEKGLDADINIDVRWRLLSGKFASPETRLLLSQ AVGIFHECFDPIVDATTGRDLIPCMVYGRNLKGQEYGGMYCAVLTINSFVVSAGIIRV FGQEIAELPLVATSIANHGKGYFQLLFSCIERLLAFLNVKNLVLPAAEEAESIWTDKF GFKKLRPDQLGEYKKSCCQMVIFKGTSMLQKEVPPCRVVNSTEPTVSYNEVE" CDS complement(join(4009701..4009754,4010176..4010269, 4010360..4010416,4010530..4010594,4011475..4011720, 4011859..4011915,4012059..4012116,4012289..4012499, 4013373..4013539,4013631..4013686,4013905..4013986, 4014079..4014171,4014365..4014457,4014664..4014756, 4014902..4014994,4015145..4015237,4015799..4015907, 4016013..4016217,4016322..4016393,4016520..4017494)) /locus_tag="TCM_022344" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain isoform 4" /protein_id="EOY08021.1" /db_xref="Phytozome:POPTR_0006s12180.1" /db_xref="TAIR:AT2G36720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFT6" /translation="MKRELEFGLEGSLGPTRESLTQSQTQARSSTSCKRVKVTQVNGY IVYTRVKKSRINCRDEFSENLENKKFENCNEQINGVKECLVGEDQKNKTLIEVSHGNN NVIEDVIGGRPGNQNVAGENVLVKNVVDESLVVRDIGEGGPFVEASIEESRVIGENAI VGNLVVEEIGRDGRLVLQARLGEGSSYNLAMVMSKDERSNELGTCLVEEGGLGEASMQ IVDSSEGKTDLLLKTLRRSKRSLLRPKVEPLDSLECEQHTVVNVSVSSFGGEEAAEGS DLTTPRKKLELKMSKKIALNKCPMTVKELFDTGLLDGVPVVYMGTISSKTAGLRGIIT DGGILCSCSLCKGRRVVPPSQFEIHACKQYKRAAQYICFENGKSLLEVLRACRRRPLH TLEATIQNILSALPEQKCFTCRRCKGSFPVIHVGQIGPLCNSCVESKKSQCSTMSAPS GVARSQEPVLISHSSGSSSVGILPQSTSQWKMTRKSQEPVLMSQSFGSASSSVSPQNK SQWKKARKSSELDVTANSPHCASLCISSQNRSPWKTTRKLTKPGLFTKSLKSASVHIS SQDKAQWRIKKKPIKPVLMSKTLKGVSSPMYSPNGSQWKMTTKDQRLHKLVFEEDGLP DGTEVAYYARGQQVSPSQFEAHAGWASRRKPYAYIYTSNGVSLHELAISLSKGRRYSA KDNDDACIICADGGNLLLCDGCPRAFHKECASLPTIPRGRWYCKYCQNMFMREKFVEH NANAVAAGRILGVDAIEQITSRCIRIVKNIEAELSGCALCRACDFSKSGFGPRTILLC DQCEKEYHIGCLRTHKMADLREIPRGKWFCCSDCSRIHSILQKLLIREAEKLPDSLLD VIRKKYVEKGLDADINIDVRWRLLSGKFASPETRLLLSQAVGIFHECFDPIVDATTGR DLIPCMVYGRNLKGQEYGGMYCAVLTINSFVVSAGIIRVFGQEIAELPLVATSIANHG KRATSSCCSPVLRGCWHS" mRNA complement(join(4009723..4009752,4010176..4010269, 4010360..4010416,4010530..4010594,4011475..4011720, 4011859..4011915,4012059..4012499,4013373..4013539, 4013631..4013683,4013767..4013826,4013905..4013986, 4014079..4014171,4014365..4014457,4014664..4014756, 4014902..4014994,4015145..4015237,4015799..4015907, 4016013..4016217,4016322..4016393,4016520..4017530, 4017625..4017885)) /locus_tag="TCM_022344" /product="Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain isoform 2" /inference="alignment:exonerate- protein:2:ricco:30078.m002221" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400048975" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc93t7; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc60t9" CDS complement(join(4012285..4012499,4013373..4013539, 4013631..4013683,4013767..4013826,4013905..4013986, 4014079..4014171,4014365..4014457,4014664..4014756, 4014902..4014994,4015145..4015237,4015799..4015907, 4016013..4016217,4016322..4016393,4016520..4017494)) /locus_tag="TCM_022344" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain isoform 2" /protein_id="EOY08019.1" /db_xref="Phytozome:PGSC0003DMP400048975" /db_xref="TAIR:AT2G36720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IFT6" /translation="MKRELEFGLEGSLGPTRESLTQSQTQARSSTSCKRVKVTQVNGY IVYTRVKKSRINCRDEFSENLENKKFENCNEQINGVKECLVGEDQKNKTLIEVSHGNN NVIEDVIGGRPGNQNVAGENVLVKNVVDESLVVRDIGEGGPFVEASIEESRVIGENAI VGNLVVEEIGRDGRLVLQARLGEGSSYNLAMVMSKDERSNELGTCLVEEGGLGEASMQ IVDSSEGKTDLLLKTLRRSKRSLLRPKVEPLDSLECEQHTVVNVSVSSFGGEEAAEGS DLTTPRKKLELKMSKKIALNKCPMTVKELFDTGLLDGVPVVYMGTISSKTAGLRGIIT DGGILCSCSLCKGRRVVPPSQFEIHACKQYKRAAQYICFENGKSLLEVLRACRRRPLH TLEATIQNILSALPEQKCFTCRRCKGSFPVIHVGQIGPLCNSCVESKKSQCSTMSAPS GVARSQEPVLISHSSGSSSVGILPQSTSQWKMTRKSQEPVLMSQSFGSASSSVSPQNK SQWKKARKSSELDVTANSPHCASLCISSQNRSPWKTTRKLTKPGLFTKSLKSASVHIS SQDKAQWRIKKKPIKPVLMSKTLKGVSSPMYSPNGSQWKMTTKDQRLHKLVFEEDGLP DGTEVAYYARGQRLLEGYKKGFGIFCRCCNCEVSPSQFEAHAGWASRRKPYAYIYTSN GVSLHELAISLSKGRRYSAKDNDDACIICADGGNLLLCDGCPRAFHKECASLPTIPRG RWYCKYCQNMFMREKFVEHNANAVAAGRILGVDAIEQITSRCIRIVKNIEAELSGCAL CR" mobile_element 4020115..4021630 /note="source:CACAO_M_S_E52043_F17_scaffold_5 1 1516" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4032474..4042313 /note="source:INTACT636_F7_scaffold_5-int 1 9840" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 4047666..4049388 /locus_tag="TCM_022347" /note="dbxref CacaoGD:Thecc1EG022347" mRNA join(4047666..4047882,4048520..4049388) /locus_tag="TCM_022347" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.63 coverage" CDS 4048796..4049263 /locus_tag="TCM_022347" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08022.1" /translation="MSHDSKANLFCTKNPFNQAAASTQKLWPLAYKYIGKIPKYQIQN KITRKWMQHNLTRPGESFLEPCKSYNEVKRDDEEAEMPKDRSCPIRETALEEGDSVST ISIDSHCPWKRLVGNDKKKTENERNCITITKKPEALAPLPWWFEHLKPLAGVA" gene complement(4049999..4063481) /locus_tag="TCM_022348" /note="dbxref CacaoGD:Thecc1EG022348" mRNA complement(join(4049999..4051158,4051318..4051451, 4051630..4054866,4056753..4056906,4057006..4057043, 4058079..4058201,4058410..4058607,4058714..4059182, 4063156..4063481)) /locus_tag="TCM_022348" /product="F-box and Leucine Rich Repeat domains containing protein, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene00962" /inference="similar to AA sequence:frave:gene00962" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc2140t1" mRNA complement(join(4049999..4051158,4051318..4051451, 4051630..4054866,4056753..4056906,4057006..4057043, 4058079..4058607,4058714..4059182,4063156..4063481)) /locus_tag="TCM_022348" /product="F-box and Leucine Rich Repeat domains containing protein, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene00962" /inference="similar to AA sequence:frave:gene00962" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:PASA:2:TSA:puevd3b021633t1a2; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc2140t1" CDS complement(join(4050912..4051158,4051318..4051451, 4051630..4054866,4056753..4056906,4057006..4057043, 4058079..4058201,4058410..4058607,4058714..4058938)) /locus_tag="TCM_022348" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene00962" /codon_start=1 /product="F-box and Leucine Rich Repeat domains containing protein, putative isoform 1" /protein_id="EOY08023.1" /db_xref="TAIR:AT1G22060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTJ2" /translation="MLHNNDQQANNLPLGGNTIEIVVVLLLRYLQIFLINSEGKDLEK AGKTMFRLHKTRPTKSGEKIDFRFSNFKAVQVPKGWDRLFMSIISVENGKTIAKTSKA VVRNGTCQWTEALPESIWVSRNEASNVMEDCLFKLVVAMGSARSGILGEATVNMTDYI SSTAVVPVSLPLKKCNHGTNLLVKIHCLTPRLKLMDEEAKQTNSHGEENNTDPSHMSF NSDGPESVESPPSQDLVSAPHQGELESREASFSTSDSHHSYDSAESSIGRESFSTVSN LSGDAQNLIQRRDSPTSQNSLPLGNCHLDDPSQSNDPSFDSQIMGSESTFLDNQQELS ASSLRVTDSSKNLLEAAEKTIEELHAEAKMWERKAEKLMLDLDILRKEHFDQSKNQAN LTMELSAANTERDGLRKEVEQMKLLLEKSMAKQTTLEDSSVRDEGVTHIQKELENEIG FQKESNDNLSLQLKRSQDANIELVSVFQELEGTIEKQRVDMENISSLQSEISKLENTI QLNTKENRNLVIQLQQSKESEKNLQAKVQLLEKALKDKEDDMESGVAQNNDALLNIEE EYKSTLAAKEREIVSLKVKLSESLKERHSLKLESRKGGDAHLIREIEALKAKLEELES DCNELTDENLELLLKLKETKNNFKGGVASTDFSPDELSASAGSEVSEHRSQMLYLEEK LKKKILREIQSDYNSYIQELESQKMELDAEVTEVGKELTQKWTETQTLEATMRSKEEE NVELRRNQCKLEAEVSNLLKEKAQLEDKLDVLQGESDIATKCLDDLRNDMMVLRSSMD SDDSAYKILESKSSELERVKHELEMHLLELEDENKQLSLRLSLLEAQLEDLKDERDSS RMQLEDSKSLATSLKDEIARSRNEMEPQKTDMEEKLQDKHVQWLASQDKCEYLRRANT KLQATAETLIEECNAHQKSAGELRKEKLKLDEHCAHLEAKLKDSDKNLIDCSKKIEVL EKNLTLMMEKFAHKGESLTLELDSIHDKNKKLEAELRREESSWNQLYLEKTNEVENIR QEVENLAMQLSATHHEKEKTANDALHQISGLRVDKVRLESALEEAESKTKCTENELKK LQTEDKTKMEDLLDELAASRENQEILMTEHEKALKLLESYKSSEGKLKTFVNDLELKL TVSEYDRQLVSEQSSNMKVQLLKIENLQENILALRDERNAIKSDKEKLEASLRIVSGE CSDLKAEKNSIVEQISTLQKVVSELEDYKHKNVALEEKLVKMEGDLTVKEALLTQDAE LKNELHQIKRTNRQFQQQIEQLQEENDGLLIKAQTLEEKLKLKAEEKQKQRQSNSHRN QHKREDNNYDFHDGSPHAVGVDPVSKIQLLENELAKAMEANNKYKVRLNRLSEGRKNQ SNTPKKSAIEGEVVAKEKYERTKSSLEAELRDIRERYLHMSLKYAEVEAQREELVMKL RGVKSMRRWFSDPSN" CDS complement(join(4050912..4051158,4051318..4051451, 4051630..4054866,4056753..4056906,4057006..4057043, 4058079..4058159)) /locus_tag="TCM_022348" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene00962" /codon_start=1 /product="F-box and Leucine Rich Repeat domains containing protein, putative isoform 2" /protein_id="EOY08024.1" /translation="MTDYISSTAVVPVSLPLKKCNHGTNLLVKIHCLTPRLKLMDEEA KQTNSHGEENNTDPSHMSFNSDGPESVESPPSQDLVSAPHQGELESREASFSTSDSHH SYDSAESSIGRESFSTVSNLSGDAQNLIQRRDSPTSQNSLPLGNCHLDDPSQSNDPSF DSQIMGSESTFLDNQQELSASSLRVTDSSKNLLEAAEKTIEELHAEAKMWERKAEKLM LDLDILRKEHFDQSKNQANLTMELSAANTERDGLRKEVEQMKLLLEKSMAKQTTLEDS SVRDEGVTHIQKELENEIGFQKESNDNLSLQLKRSQDANIELVSVFQELEGTIEKQRV DMENISSLQSEISKLENTIQLNTKENRNLVIQLQQSKESEKNLQAKVQLLEKALKDKE DDMESGVAQNNDALLNIEEEYKSTLAAKEREIVSLKVKLSESLKERHSLKLESRKGGD AHLIREIEALKAKLEELESDCNELTDENLELLLKLKETKNNFKGGVASTDFSPDELSA SAGSEVSEHRSQMLYLEEKLKKKILREIQSDYNSYIQELESQKMELDAEVTEVGKELT QKWTETQTLEATMRSKEEENVELRRNQCKLEAEVSNLLKEKAQLEDKLDVLQGESDIA TKCLDDLRNDMMVLRSSMDSDDSAYKILESKSSELERVKHELEMHLLELEDENKQLSL RLSLLEAQLEDLKDERDSSRMQLEDSKSLATSLKDEIARSRNEMEPQKTDMEEKLQDK HVQWLASQDKCEYLRRANTKLQATAETLIEECNAHQKSAGELRKEKLKLDEHCAHLEA KLKDSDKNLIDCSKKIEVLEKNLTLMMEKFAHKGESLTLELDSIHDKNKKLEAELRRE ESSWNQLYLEKTNEVENIRQEVENLAMQLSATHHEKEKTANDALHQISGLRVDKVRLE SALEEAESKTKCTENELKKLQTEDKTKMEDLLDELAASRENQEILMTEHEKALKLLES YKSSEGKLKTFVNDLELKLTVSEYDRQLVSEQSSNMKVQLLKIENLQENILALRDERN AIKSDKEKLEASLRIVSGECSDLKAEKNSIVEQISTLQKVVSELEDYKHKNVALEEKL VKMEGDLTVKEALLTQDAELKNELHQIKRTNRQFQQQIEQLQEENDGLLIKAQTLEEK LKLKAEEKQKQRQSNSHRNQHKREDNNYDFHDGSPHAVGVDPVSKIQLLENELAKAME ANNKYKVRLNRLSEGRKNQSNTPKKSAIEGEVVAKEKYERTKSSLEAELRDIRERYLH MSLKYAEVEAQREELVMKLRGVKSMRRWFSDPSN" mobile_element complement(4062517..4063978) /note="source:scaffold_4_CACTA_0503 4041 5503" /mobile_element_type="transposon:TIR/CACTA" gene 4063766..4070766 /locus_tag="TCM_022349" /note="dbxref CacaoGD:Thecc1EG022349" mRNA join(4063766..4063784,4065086..4065938,4066436..4066732, 4066812..4067009,4067690..4067791,4068858..4068998, 4069138..4069245,4069722..4069804,4069912..4070074, 4070157..4070766) /locus_tag="TCM_022349" /product="Cytochrome P450 superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30078.m002224" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025309t2" /inference="similar to AA sequence:TAIR:AT3G53130.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaL_g06288t00001" mobile_element complement(4064415..4064782) /note="source:scaffold_4_CACTA_0507 1798 2165" /mobile_element_type="transposon:TIR/CACTA" mRNA join(4065342..4065938,4066447..4066732,4066812..4067009, 4067690..4067791,4068858..4068998,4069138..4069245, 4069722..4069804,4069912..4070074,4070157..4070377) /locus_tag="TCM_022349" /product="Cytochrome P450 superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30078.m002224" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025309t2" /inference="similar to AA sequence:Phytozome:GSVIVT01033707001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2489t1; inference alignment:Newbler:10:TSA:cgbaL_g06288t00001" CDS join(4065447..4065938,4066436..4066732,4066812..4067009, 4067690..4067791,4068858..4068998,4069138..4069245, 4069722..4069804,4069912..4070074,4070157..4070225) /locus_tag="TCM_022349" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG025309t2" /codon_start=1 /product="Cytochrome P450 superfamily protein isoform 1" /protein_id="EOY08025.1" /db_xref="TAIR:AT3G53130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SCP8" /translation="MRSCVALSSITFPSLPPRRLTINIPLQSFSVKSSIEKTPTTKPK PTSPSKSTSWVSPNWLTSLTKSLTIGSNDDSRIPISSAQLEDVSELLGGALFLPLFKW MNEYGPIYRLAAGPRNFVVVSDPAIAKHVLRNYGKYAKGLVSEVSEFLFGSGLAIAEG SLWTVRRRAVVPSLHKKYLSVMVDRVFCKCAERLVQKLQPFAFDGTAVNMEEKFSQLT LDVIGLSVFNYNFDSLTSDSPVIDAVYTALKEAELRSTDILPYWKIRALCKVIPRQIK AEQAVTVIRRTVEELIIKCKEIVEREGERIDEEEYVNDADPSILRFLLASREEVSSMQ LRDDLLSMLVAGHETTGSVLTWTLYLLSKDSSTLLKAREEVDRVLKGRPPAYEDIKDL KFLTRCITESLRLYPHPPVLIRRAQVDDILPGNYKVKAGQDIMISVYNIHHSSQVWER AEEFVPERFDLESPVPNETNTDYRFIPFSGGPRKCVGDQFALLEAIVALAIFLQRLNF ELVPDQDISMTTGATIHTTNGMYMKLSERRSKFDISSPTSSK" CDS join(4066487..4066732,4066812..4067009,4067690..4067791, 4068858..4068998,4069138..4069245,4069722..4069804, 4069912..4070074,4070157..4070225) /locus_tag="TCM_022349" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG025309t2" /codon_start=1 /product="Cytochrome P450 superfamily protein isoform 2" /protein_id="EOY08026.1" /db_xref="Phytozome:GSVIVT01033707001" /db_xref="TAIR:AT3G53130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SCP8" /translation="MVDRVFCKCAERLVQKLQPFAFDGTAVNMEEKFSQLTLDVIGLS VFNYNFDSLTSDSPVIDAVYTALKEAELRSTDILPYWKIRALCKVIPRQIKAEQAVTV IRRTVEELIIKCKEIVEREGERIDEEEYVNDADPSILRFLLASREEVSSMQLRDDLLS MLVAGHETTGSVLTWTLYLLSKDSSTLLKAREEVDRVLKGRPPAYEDIKDLKFLTRCI TESLRLYPHPPVLIRRAQVDDILPGNYKVKAGQDIMISVYNIHHSSQVWERAEEFVPE RFDLESPVPNETNTDYRFIPFSGGPRKCVGDQFALLEAIVALAIFLQRLNFELVPDQD ISMTTGATIHTTNGMYMKLSERRSKFDISSPTSSK" gene complement(4070391..4071780) /locus_tag="TCM_022350" /note="dbxref CacaoGD:Thecc1EG022350" mRNA complement(join(4070391..4070597,4070794..4071780)) /locus_tag="TCM_022350" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025447t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete" CDS complement(4070805..4071608) /locus_tag="TCM_022350" /note="paralog of Thecc1EG025447t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08027.1" /translation="MASMELKDMEPVENKDFPSDLISQRHPLLVISHGKQHQKKTFFS ISSDRHYPGIIPEVENKLICTSSFGWLVLREDSHECCVLNLESREKIQLPALDMNSSF CILTASPSDCNCYIVFIHGKDNKIIFKFCRPGDQEFSSQTFEGFPCSLSSVAFFGGKI ICSLYPESFLLTAEIVGSTLQFSDLITKEVPPFVSAPKLLSQSHLVEFSGEMLLVYRF RFISGSCWDMGFTVFKLDFSKRALEEVISIGENAIFLDEDHGICCPATD" mobile_element 4072819..4073996 /note="source:INTACT639F_F363_scaffold_5-int 7463 8573" /mobile_element_type="retrotransposon:LTR/Copia" gene 4074196..4077813 /locus_tag="TCM_022351" /note="dbxref CacaoGD:Thecc1EG022351" mRNA join(4074196..4074692,4077311..4077813) /locus_tag="TCM_022351" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.31 coverage" mobile_element 4075143..4075282 /note="source:scaffold_5_CACTA_0584 7148 7303" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4075729..4077033 /note="source:CACAO_M_E3969_F127_scaffold_1 874 2160" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS 4077374..4077613 /locus_tag="TCM_022351" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08028.1" /translation="MSPVPRMALSSSTWMVRLLENQVPATVGGALHDHTGRILGVLAI NIGIEELNYAKILCHKKRVSFSSYPPNVQTPMRSL" gene complement(4080175..4083161) /locus_tag="TCM_022352" /note="dbxref CacaoGD:Thecc1EG022352" mRNA complement(join(4080175..4081228,4081375..4081723, 4081884..4082131,4082233..4082522,4082647..4082759, 4082999..4083161)) /locus_tag="TCM_022352" /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein" /inference="alignment:exonerate-protein:2:frave:gene00958" /inference="similar to AA sequence:frave:gene00958" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc3329t1" CDS complement(join(4080983..4081228,4081375..4081723, 4081884..4082131,4082233..4082522,4082647..4082759, 4082999..4083078)) /locus_tag="TCM_022352" /note="dbxref frave:gene00958" /codon_start=1 /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein" /protein_id="EOY08029.1" /db_xref="TAIR:AT2G36690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HUW4" /translation="MSCMQEVRAMRQDERARERGSFIYHQRLDTKALLHIPDHLLNFI LLLANLLSYPFFPGFSPKRLGSCVFMSPPALAMTNDDARETEFQKGVKHLFENGVSKL PKKYVLPVSDRPNVDKEQPNTAKSSLKLPIIDFAELEGPNRSQVLNSLSSACEEYGFF QVINHDIPIEVIRSMIDVSTRFFGLPYEERAKYMTSDMASPVRYGTSLNQSKDAVFCW RDFLKLVCHPLSDVLPHWPSSPMDFRELAATYAKETKYLFLRITEAILESLGLWGATK EKTPEDDEIVKQFQDGSQLMVVNCFPPCPEPDLTLGMPPHSDYGFLTLLLQDEVEGLQ IQYKGKWITVEPRANSFVVNVGDHLEIFSNGRYKSVLHRVFVNPAKPRLSVASLHSLP FNCMVGPSPKLIDEANPRRYKDTDFATFLEYISSCEPKKKNFLESRKLT" mobile_element 4085861..4090412 /note="source:scaffold_5_CACTA_0583 1 4552" /mobile_element_type="transposon:TIR/CACTA" gene complement(4088463..4090955) /locus_tag="TCM_022353" /note="dbxref CacaoGD:Thecc1EG022353" mRNA complement(join(4088463..4088723,4088828..4088856, 4088948..4089076,4089197..4089230,4089809..4089995, 4090729..4090955)) /locus_tag="TCM_022353" /product="Dynamin related protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s14790.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007356t1" /inference="similar to AA sequence:Phytozome:GSVIVT01012532001" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1547t3" CDS complement(join(4088610..4088723,4088828..4088856, 4088948..4089076,4089197..4089230,4089809..4089995, 4090729..4090811)) /locus_tag="TCM_022353" /note="paralog of Thecc1EG007356t1" /codon_start=1 /product="Dynamin related protein, putative" /protein_id="EOY08030.1" /db_xref="Phytozome:GSVIVT01012532001" /db_xref="TAIR:AT2G14120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HE97" /translation="MKEIHLTLHEKSVYRLYDRERIYMDVASVIESPVDRYFLPRGFD ICTRRPLVLYLLQTKRKPDGSEEYGKFLHLPGKHFYDFYEIRREIQVETDREAGGNKA RIGTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGNVDPDGYRTIGIITKLDIMDR STDARNLLLGKVIPLRLGYIGVVNRSQEVTM" gene complement(4092187..4094595) /locus_tag="TCM_022354" /note="dbxref CacaoGD:Thecc1EG022354" mRNA complement(4092187..4094595) /locus_tag="TCM_022354" /product="Allantoin permease" /inference="alignment:exonerate- protein:2:ricco:30078.m002226" /inference="similar to AA sequence:ricco:30078.m002226" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.20 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g13554t00001" CDS complement(4092583..4094322) /locus_tag="TCM_022354" /note="dbxref ricco:30078.m002226" /codon_start=1 /product="Allantoin permease" /protein_id="EOY08031.1" /db_xref="TAIR:AT5G03555.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HKE2" /translation="MVFKCISFHLHPHPHPHPHPHPHLSLYSAISQNPKFSSLALTPL FSTGTTTKIKATRNQIYHSFPKRCAILTPMASSGQSSVGTKFDELEPDPTLTNDDLKP TTPSQRNFHWWEMACLWIGLVVGVPSYYLAGSLVDIGMAWWQGIATVVAANLILLAPL VLTGHPGAKYGISFPVLARSAFGIRGAHVPTLLRALVGCGWYGIESWIGGEGIFLLLP KSIKESSLSQLLPWLGTSALEFACFIVFWVAQLSIVWKGMDGIKELEKYSAPILIILT SILLIWAYVKADGLGHMLSLSSRLSSSEFWSLFFPSLTANISFWAPVALNIPDFTRYA KSQKDQIIGQAGLPIFMGAFTFVGLAVTSSTEVIFGHVISSPIQLLGQIGGFATKILA ILGISLATLTTNIAANVVAPANALVNLSPSKFTFRRGALLTALLGIAFQPWRLLKSSE SFVYTWLVGYSALLGPIGGIVLADYYLIHRMNLSIKDLYSLSPYGAYYYTGGFNLAAL AALAIGILPVIPGFLQKVGILPTVSDAFVVIYNNAWFFSFFSAGLLYWILSSMRGKHT KPLPYDPLLPPAA" gene 4095492..4096799 /locus_tag="TCM_022355" /note="dbxref CacaoGD:Thecc1EG022355" mRNA 4095492..4096799 /locus_tag="TCM_022355" /product="RING-H2 finger protein ATL3C, putative" /inference="alignment:exonerate-protein:2:frave:gene00955" /inference="similar to AA sequence:frave:gene00955" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc5886t1" CDS 4095816..4096667 /locus_tag="TCM_022355" /note="dbxref frave:gene00955" /codon_start=1 /product="RING-H2 finger protein ATL3C, putative" /protein_id="EOY08032.1" /db_xref="TAIR:AT4G17905.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BL01" /translation="MDPGNSVTQPSGSFLTPLMISLAGVVASTLAIVAYHLLLVKYCV RRADEEARNPSIPTQDEGFATGVEHKILETIPILSFSREKVKEFRTDQSECVVCLGEL EEGERVRLLPNCRHFFHVPCVDNWFLAHSSCPICRTPVAVTTDASVASPPEDDGVERV QDLPQNDDGQAHDRAASTSRVQSNTLLRHCVSLVFPRETKQKHLITGLKRSLSMDQSY ILINLTVDNEKDSTTSSSTSKRSLTKSNSYKARSMKQLDRMSSLLRSFSQLRIGRSST TCGLLPY" gene complement(4098030..4100061) /locus_tag="TCM_022356" /note="dbxref CacaoGD:Thecc1EG022356" mRNA complement(join(4098030..4098774,4098961..4099320, 4099409..4099588,4099704..4100061)) /locus_tag="TCM_022356" /product="PLATZ transcription factor family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s12100.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041560t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s12100.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaB_g15554t00001" CDS complement(join(4098565..4098774,4098961..4099320, 4099409..4099588,4099704..4099706)) /locus_tag="TCM_022356" /note="paralog of Thecc1EG041560t1" /codon_start=1 /product="PLATZ transcription factor family protein" /protein_id="EOY08033.1" /db_xref="Phytozome:POPTR_0006s12100.1" /db_xref="TAIR:AT1G21000.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B8LKW6" /translation="MATMLVPPWLESLLSTAFFTVCRTHGDAARGECNMYCLDCKGDA FCYYCRSSKHKDHQVIQIRRSSYHDVVRVTEIQKVLDISGVQTYVINSARVLFLNERP QPKSGKGVAHLCEICGRSLLDPFRFCSLGCKVSVCLSLFASLHIVFFFSSSTSFTTHH IWSHFVNLHNSTTCSSSLISYLVGIKRNGNASFTLEAKNDVVMDKREDMSREEEELRE GSQQDIYPPTPPPPPSSARRRKGIPHRAPFGS" gene 4105137..4108549 /locus_tag="TCM_022357" /note="dbxref CacaoGD:Thecc1EG022357" mRNA join(4105137..4105327,4106276..4106500,4106773..4106860, 4107766..4107805,4107903..4107949,4108048..4108168, 4108256..4108549) /locus_tag="TCM_022357" /product="Modifier of rudimentary (Mod(r)) protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s10930.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s10930.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05692t00001" CDS join(4105314..4105327,4106276..4106500,4106773..4106860, 4107766..4107805,4107903..4107949,4108048..4108168, 4108256..4108419) /locus_tag="TCM_022357" /codon_start=1 /product="Modifier of rudimentary (Mod(r)) protein" /protein_id="EOY08034.1" /db_xref="Phytozome:POPTR_0016s10930.1" /db_xref="TAIR:AT2G36680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TIW6" /translation="MFKFWGSQEQQAQQRPQEGSSHSWYPPSVVSSPSSSRPTTPSSS ASNSFNLQRPAERPHSPTPVSPAEAAGIIALLKDKSVDELRKLLSDKDAYNQFLLSVD QVKIQNNIRDELRKETLQLARNNLDKEPRIMELRNQCRIIRTTELATAQEKLNELERQ KEEILKYYSPASFIHRLQDAMNETEEELEALHRQLLDREMDLGTFVQKYKKLRTTYHR RALIHLAAKTSPIG" gene complement(4108792..4110804) /locus_tag="TCM_022358" /note="dbxref CacaoGD:Thecc1EG022358" mRNA complement(join(4108792..4109145,4109235..4109565, 4110432..4110804)) /locus_tag="TCM_022358" /product="Tetratricopeptide repeat-like superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30078.m002232" /inference="similar to AA sequence:Phytozome:POPTR_0016s10940.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g06483t00001" CDS complement(join(4109059..4109145,4109235..4109565, 4110432..4110721)) /locus_tag="TCM_022358" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein" /protein_id="EOY08035.1" /db_xref="Phytozome:POPTR_0016s10940.1" /db_xref="TAIR:AT5G03560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C5YN57" /translation="MATRLVRKLPSSSSTFSSSLITKSTAEISPPLVGHGGSILRWAS SSSSSSSSTATTSSNSSSSKQEKKITDRLSAVIDAVNDRKLPPELRGQRNAVRSETDI INVVEQRIWHSMEEGQFENLPGKGKPLNLNTNPHADPAEDTLYRILSKNGCAPEWVEL NKEIRNKVSEWRVALKKAWESKCNGDHNKWVECSETLKMQLCDINDKVFRYNLIVPFG RQMFGLKWEKEVARLEE" gene complement(4111201..4112845) /locus_tag="TCM_022359" /note="dbxref CacaoGD:Thecc1EG022359" mRNA complement(join(4111201..4111598,4111691..4111882, 4112659..4112845)) /locus_tag="TCM_022359" /product="Pollen Ole e 1 allergen and extensin family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s12070.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s12070.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.37 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2532t1" CDS complement(join(4111243..4111598,4111691..4111865)) /locus_tag="TCM_022359" /codon_start=1 /product="Pollen Ole e 1 allergen and extensin family protein, putative" /protein_id="EOY08036.1" /db_xref="Phytozome:POPTR_0006s12070.1" /db_xref="TAIR:AT3G09925.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTK8" /translation="MATVALMLIAASLLMGCSTQTKATVVPALQVINLGGKVLCQDCT KGYGEWAQGSQPIKGCKVSVTCMDDRSRIMYYGSDETDEQGQFNMVVNKFINGKELQA KSCLVRLVSSPHPTCNIPSNFAGGQRGVKLPIRPTVVYRDLVQYQLDTFFYTTPRCDK PADTHDSFECHGNNNY" gene 4112147..4114496 /locus_tag="TCM_022360" /note="dbxref CacaoGD:Thecc1EG022360" mRNA join(4112147..4112221,4112971..4114496) /locus_tag="TCM_022360" /product="Eukaryotic release factor 1 (eRF1) family protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT4G27650.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025327t2" /inference="similar to AA sequence:TAIR:AT4G27650.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.19 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2535t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc4529t1" CDS 4113191..4114303 /locus_tag="TCM_022360" /note="paralog of Thecc1EG025327t2" /codon_start=1 /product="Eukaryotic release factor 1 (eRF1) family protein, putative" /protein_id="EOY08037.1" /db_xref="TAIR:AT4G27650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZT87" /translation="MKILQQNLALNQPGSVKIILEEEDDLWLAYNLFAKGDTIVADTT RKVIHNKSSANGKRKDSTRVKTKLEIRITDVDYEKDSSKVRVRGRNLVANELMAYGAY HTLEIEMNKEFDLSKKHWDSDAIDTLHEGSEKASGADLAVVLFQQWSAQVFLIGHKVT TLAKVEASKTNNKTASNKFFEKVFQAFVKHVDFNTVRCVVLGSPDSTKEEFRGYLFQE AQRLKMKRVEENKSRFVMVNIGNKNSLKEVLHDNEVMGLIKDTKAVMEIRAYKQFSDL LLTDSDRACYGPRSVETAQEMMAIETLLIMDELLRNKEIALRKKYMELVKSVKKAGGK AFLFSSMHVSGEQLAQLTGIAAILRFPLPQLDELVL" gene complement(4114375..4118645) /locus_tag="TCM_022361" /note="dbxref CacaoGD:Thecc1EG022361" mRNA complement(join(4114375..4115048,4115150..4115235, 4115616..4115727,4115804..4116208,4116604..4116669, 4117646..4117873,4117960..4118253,4118352..4118645)) /locus_tag="TCM_022361" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033721001" /inference="similar to AA sequence:Phytozome:GSVIVT01033721001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2644t2" CDS complement(join(4114986..4115048,4115150..4115235, 4115616..4115727,4115804..4116208,4116604..4116669, 4117646..4117873,4117960..4118253,4118352..4118606)) /locus_tag="TCM_022361" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein" /protein_id="EOY08038.1" /db_xref="Phytozome:GSVIVT01033721001" /db_xref="TAIR:AT3G53110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HKF1" /translation="MADTATPTSTAAAAAEVPPPQEAKKATEAPKRWADVEDDPPEES SASLASEEKGAPELDVENLAIDENRKINKFLDEPEDSNIKAVTPWDTPYTSASTFEEL KLSPELLKGLYVEMKFEKPSKIQAISLPMILTPPYMDLIAQAHNGSGKTTCFTLGMLS RVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAIPMDSSNYLPINKRPP ITAQVVIGTPGTIKKWMSAKKLGVSCVKILVFDEADHMLAEDGFKDDSLRIMRDIERI SSNCQVLLFSATFSETVKNFVSRIVKRDHNQLFVKKEELSLESVKQYKVNVPDELSKV TVIKERIFEFGERLGQTIIFVRTRNSASMLHKSLVDLGYDVTTIQGALKQDDRDKIVK EFKDGLTQVLISTDLLARGFDQQQVNLVINYDLPVKHDNRTEPDCEVYLHRIGRAGRF GRKGAVFNLLCGDMDRMIMSKIENHFGTKIAEVADWRNEEDFKAALRSAGLL" gene complement(4121868..4124065) /locus_tag="TCM_022362" /note="dbxref CacaoGD:Thecc1EG022362" mRNA complement(join(4121868..4123173,4123272..4123425, 4123514..4124065)) /locus_tag="TCM_022362" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.75 coverage" CDS complement(join(4122745..4123173,4123272..4123425, 4123514..4123746)) /locus_tag="TCM_022362" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08039.1" /translation="MVKNKYKNSSRKAHCKVVILSTFKERTVRISTPDLTKEAKEEHR HDTARVAVATRVLTLRLYLCYIWDPTIFQREILQYNIKVKGIVFAIVIFCLSKKDMGS VNPLSSRSSQCLLTRSAKWQLDTSLLAKAENELETQVGIKGSASGGVGHKKPHHAICK PLSRKHCDYAQPRLSQYRKKPWRLYGSGLSCSSGHSLCPTFGKSLQDLCLSGPLMNMP SLMYHLVLVRRCVQLLLFELRVTKHWLDRLLHGLTLPLSFFAKQRITMAKTKP" gene <4124506..4142200 /locus_tag="TCM_022363" /note="dbxref CacaoGD:Thecc1EG022363" mRNA join(<4124506..4124878,4125513..4125642,4125744..4125991, 4126538..4126765,4127580..4127742,4127915..4127988, 4128148..4128432,4128732..4128803,4128913..4129893) /locus_tag="TCM_022363" /product="Eukaryotic aspartyl protease family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30078.m002214" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041550t1" /inference="similar to AA sequence:ricco:30078.m002214" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.88 coverage; inference alignment:PASA:2:TSA:puevd3b021647t1a2; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1361t8_C1" CDS join(<4124508..4124878,4125513..4125642,4125744..4125991, 4126538..4126765,4127580..4127742,4127915..4127988, 4128148..4128262) /locus_tag="TCM_022363" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30078.m002214; paralog of Thecc1EG041550t1" /codon_start=1 /product="Eukaryotic aspartyl protease family protein isoform 2" /protein_id="EOY08041.1" /db_xref="TAIR:AT2G36670.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FFC3" /translation="RFLFFSFASSLFFFFFLNAENQTGSIFLFRYLFIKKKLSFLFQF SQSLWKMRALGLLILGILAVLSVVYCDVIPLERAFPLNKRVELSHLVARDQLRHSRIL QGLVGGVVDFSVQGSSDPYLVGLYFTKVKLGSPPREFNVQIDTGSDILWVTCSSCPNC PQSSGLGIQLSLFDTASSSSARLVSCSDPMCSSEFQTTATQCSQSNQCSYSFQYGDGS GTSGYYVSDMLYFDAVLGQSLIANSSAVIMFGCSTYQSGDLTKTDKAVDGIFGFGRGD LSVISQLSSHGITPRVFSHCLRGDGSGGGIMVLGEIMEPGIVYSPLVPSQPHYNLVLQ SIAVNGQFLAIDPSVFATSNNRGTIVDSGTTLAYLVQEAYDPFVSTITATVSPSVTPT IYKGNQCYLVPTSVNEIFPPVSLNFAGGASMTLKPEEYLIHSGFYVSCPT" mRNA join(4124560..4124878,4125513..4125642,4125744..4125991, 4126538..4126765,4127580..4127742,4127915..4127988, 4128148..4128244,4128369..4128432,4128732..4128803, 4128913..4129709,4142192..4142200) /locus_tag="TCM_022363" /product="Eukaryotic aspartyl protease family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30078.m002214" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041550t1" /inference="similar to AA sequence:ricco:30078.m002214" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1361t8_C1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1361t8_C1" CDS join(4124658..4124878,4125513..4125642,4125744..4125991, 4126538..4126765,4127580..4127742,4127915..4127988, 4128148..4128244,4128369..4128432,4128732..4128803, 4128913..4129079) /locus_tag="TCM_022363" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30078.m002214; paralog of Thecc1EG041550t1" /codon_start=1 /product="Eukaryotic aspartyl protease family protein isoform 1" /protein_id="EOY08040.1" /db_xref="TAIR:AT2G36670.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FFC3" /translation="MRALGLLILGILAVLSVVYCDVIPLERAFPLNKRVELSHLVARD QLRHSRILQGLVGGVVDFSVQGSSDPYLVGLYFTKVKLGSPPREFNVQIDTGSDILWV TCSSCPNCPQSSGLGIQLSLFDTASSSSARLVSCSDPMCSSEFQTTATQCSQSNQCSY SFQYGDGSGTSGYYVSDMLYFDAVLGQSLIANSSAVIMFGCSTYQSGDLTKTDKAVDG IFGFGRGDLSVISQLSSHGITPRVFSHCLRGDGSGGGIMVLGEIMEPGIVYSPLVPSQ PHYNLVLQSIAVNGQFLAIDPSVFATSNNRGTIVDSGTTLAYLVQEAYDPFVSTITAT VSPSVTPTIYKGNQCYLVPTSVNEIFPPVSLNFAGGASMTLKPEEYLIHSGFYDGATM WCIGFQKVQGGVTILGDLVLKDKIFVYDLARQRIGWANYDCSLSVNVSITSSKDFINE GQLSVSSSTIEMLFKLIPLSFITLLMQLLEFVEFQFL" gene 4130315..4134141 /locus_tag="TCM_022364" /note="dbxref CacaoGD:Thecc1EG022364" mRNA join(4130315..4130950,4131461..4131579,4131678..4131871, 4131944..4132203,4132299..4132405,4132502..4132691, 4132824..4133119,4133227..4133370,4133458..4133661, 4133750..4134141) /locus_tag="TCM_022364" /product="Poly(A) binding protein 7" /inference="alignment:exonerate- protein:2:ricco:30078.m002213" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007096t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033724001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2550t2" CDS join(4130749..4130950,4131461..4131579,4131678..4131871, 4131944..4132203,4132299..4132405,4132502..4132691, 4132824..4133119,4133227..4133370,4133458..4133661, 4133750..4133947) /locus_tag="TCM_022364" /note="paralog of Thecc1EG007096t1" /codon_start=1 /product="Poly(A) binding protein 7" /protein_id="EOY08042.1" /db_xref="Phytozome:GSVIVT01033724001" /db_xref="TAIR:AT2G36660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B3Z9" /translation="MAVPSAVTMTASPASLYVGDLHPDVSDGQLFDAFSEFKSLASVR VCRDSSTGRSLCYGYVNFISPQDAHHAIEAKNHSLLNGKMIRVMWSLRDADARKSGVG NVFVKNLSDTIDNVGLQELFRMFGNVISCKVATFEDGKSKGYGFVQFELEESANDAIE KLNGSTLGDKQIYVGKFMKKSDRVMLSPDVKYTNLYMKNLDADITEELLQDKFSKFGE IASLFVAKDENGSSRGFGFVNFESPDDAKRAMEAMNGSQLGSKVLYVARAQKKAEREQ ILRRQFEEKRKAQVMKYKASNVYVKNIDDDVTDEELKEHFSQCGTITSSKLMRDDKGI SKGFGFVCFSTPEEATKAVSTFHGHMFHRKPLYVAIAQRKEDRQAHLQLHYAQRTAGL AGPSTAVLPGGYPPLYYTASPGVVSPVPPRPGMMYQPLGLRAGWRANAFTPPTRPAFQ PSSLPMVPSATRQTRQNRARMNGHALLQGGSYSVPQLQQPAQSGTTLKDQSNQQRVGQ AKYVPNGRGREVNRGSGVPPAASNSVAAVSQGSETLSSMLAAASPEQQKTILGERLYP LVQKHQPDLVPKITGMLLEMDNSELLLLLESPESLGAKVEEAVEVLKLSNAKVSGQDA LHPSFLSAEVAVN" mobile_element 4134708..4134821 /note="source:INTACT710_F62_scaffold_3-int 732 847" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4134727..4134822) /note="source:CACAO_M_S_E32672_F265_scaffold_4 1596 1690" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4134824..4135385) /note="source:scaffold_1_CACTA_0009 13287 13830" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4135122..4139092 /note="source:CACAO_M_E33977_F20_scaffold_4 5405 9331" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4138845..4139124 /note="source:CACAO_Mutator_E1410_scaffold_6 5707 5988" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(4139132..4139232) /note="source:scaffold_1_CACTA_0009 9438 9538" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4139239..4142177 /note="source:CACAO_M_E33977_F20_scaffold_4 13768 16527" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4142182..4142714 /note="source:scaffold_3_CACTA_0385 882 1415" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4144540..4144956) /note="source:CACAO_Mutator_E1430_scaffold_6 1030 1429" /mobile_element_type="transposon:TIR/Mutator" mobile_element 4147465..4147551 /note="source:INTACT1334F_F383_scaffold_8-int 2929 3013" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4147712..4147781) /note="source:scaffold_2_CACTA_0253 4286 4359" /mobile_element_type="transposon:TIR/CACTA" gene 4151679..4159836 /locus_tag="TCM_022366" /note="dbxref CacaoGD:Thecc1EG022366" mRNA join(4151679..4152196,4152276..4152367,4152829..4152928, 4153039..4153110,4153234..4153296,4153377..4153517, 4155769..4155864,4156210..4156494,4156582..4156720, 4156816..4156958,4157037..4157213,4157319..4157585, 4157699..4158215,4159730..4159836) /locus_tag="TCM_022366" /product="F21M11.16 protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s12020.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027063t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033725001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04634t00001" mRNA join(4151864..4152196,4152276..4152367,4152829..4152928, 4153039..4153110,4153234..4153294,4155767..4155864, 4156210..4156494,4156582..4156720,4156816..4156958, 4157037..4157213,4157319..4157585,4157699..4158049) /locus_tag="TCM_022366" /product="F21M11.16 protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s12020.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027063t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033725001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1183t11; inference alignment:Newbler:10:TSA:cgbaB_g04634t00001" mRNA join(4151864..4152196,4152276..4152367,4152829..4152928, 4153039..4153110,4153234..4153294,4155767..4155864, 4156210..4156494,4156582..4156720,4156837..4156958, 4157037..4157213,4157319..4157585,4157699..4158049) /locus_tag="TCM_022366" /product="F21M11.16 protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s12020.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027063t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033725001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1183t3; inference alignment:Newbler:10:TSA:cgbaB_g04634t00001" CDS join(4151879..4152196,4152276..4152367,4152829..4152928, 4153039..4153110,4153234..4153296,4153377..4153517, 4155769..4155864,4156210..4156494,4156582..4156720, 4156816..4156958,4157037..4157213,4157319..4157585, 4157699..4157818) /locus_tag="TCM_022366" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG027063t1" /codon_start=1 /product="F21M11.16 protein isoform 1" /protein_id="EOY08043.1" /db_xref="Phytozome:GSVIVT01033725001" /db_xref="TAIR:AT1G03910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZWB1" /translation="MARSSRSKRRSDDDSASESESDETDRPESSPDKRSSKRSRDRSR RSKSKSSRHSHSRSRRDHDPNDDFSGDDSEGSDRGHSKKKRSSRNITEEEIAEYMAKK AQKKAMRAAKKLKAQTVSGYSNDSNPFGDSNLNEKFVWRKKIERDVAQGVPLDTFSVK AEKKRQKERMAEIEKVKKRREERAVEKAQHEEEMALLARERARAEFQDWEKKEEEFHF DQSKVRSEIRLREGRMKSIDVLSKHLNGSDDMDIELNEPYMVFKGLTVKEMEELRDDI KMHLDLDRATPTHIEYWEALMVVCDWELAEAQKKDALDRARVRGEEPPAELLVEERGL HSSIEADVKNLLEGKTHHELEALQSQIESQMRTGTAKVVEYWEAVLKRLHIFKAKACL KEIHAKMLRKHLQRLEQPSEGEDRPESHHGLRSGEEDSDHDVKDVETYSPEPILQEET YEVEEEAGSFSPELLHGDENEEAIDPEEDRAILERKRMAVLEEQQRRMQEAMAAKPTP SEDNFELKAMKAMGAMEEGDAVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYE WNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPAFTIEKDGNSTETCIIRFHA GPPYEDIAFRIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRR" CDS join(4151879..4152196,4152276..4152367,4152829..4152928, 4153039..4153110,4153234..4153294,4155767..4155864, 4156210..4156494,4156582..4156720,4156816..4156958, 4157037..4157213,4157319..4157585,4157699..4157818) /locus_tag="TCM_022366" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG027063t1" /codon_start=1 /product="F21M11.16 protein isoform 2" /protein_id="EOY08044.1" /db_xref="Phytozome:GSVIVT01033725001" /db_xref="TAIR:AT1G03910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZWB1" /translation="MARSSRSKRRSDDDSASESESDETDRPESSPDKRSSKRSRDRSR RSKSKSSRHSHSRSRRDHDPNDDFSGDDSEGSDRGHSKKKRSSRNITEEEIAEYMAKK AQKKAMRAAKKLKAQTVSGYSNDSNPFGDSNLNEKFVWRKKIERDVAQGVPLDTFSVK AEKKRQKERMAEIEKVKKRREERAVEKAQHEEEMALLARERARAEFQDWEKKEEEGLT VKEMEELRDDIKMHLDLDRATPTHIEYWEALMVVCDWELAEAQKKDALDRARVRGEEP PAELLVEERGLHSSIEADVKNLLEGKTHHELEALQSQIESQMRTGTAKVVEYWEAVLK RLHIFKAKACLKEIHAKMLRKHLQRLEQPSEGEDRPESHHGLRSGEEDSDHDVKDVET YSPEPILQEETYEVEEEAGSFSPELLHGDENEEAIDPEEDRAILERKRMAVLEEQQRR MQEAMAAKPTPSEDNFELKAMKAMGAMEEGDAVFGSGAEVNLDSQVYWWHDKYRPRKP KYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPAFTIEKDGN STETCIIRFHAGPPYEDIAFRIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRR" CDS join(4151879..4152196,4152276..4152367,4152829..4152928, 4153039..4153110,4153234..4153294,4155767..4155864, 4156210..4156494,4156582..4156720,4156837..4156958, 4157037..4157213,4157319..4157585,4157699..4157818) /locus_tag="TCM_022366" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG027063t1" /codon_start=1 /product="F21M11.16 protein isoform 3" /protein_id="EOY08045.1" /db_xref="Phytozome:GSVIVT01033725001" /db_xref="TAIR:AT1G03910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZWB1" /translation="MARSSRSKRRSDDDSASESESDETDRPESSPDKRSSKRSRDRSR RSKSKSSRHSHSRSRRDHDPNDDFSGDDSEGSDRGHSKKKRSSRNITEEEIAEYMAKK AQKKAMRAAKKLKAQTVSGYSNDSNPFGDSNLNEKFVWRKKIERDVAQGVPLDTFSVK AEKKRQKERMAEIEKVKKRREERAVEKAQHEEEMALLARERARAEFQDWEKKEEEGLT VKEMEELRDDIKMHLDLDRATPTHIEYWEALMVVCDWELAEAQKKDALDRARVRGEEP PAELLVEERGLHSSIEADVKNLLEGKTHHELEALQSQIESQMRTGTAKVVEYWEAVLK RLHIFKAKACLKEIHAKMLRKHLQRLEQPSEGEDRPESHHGLRSGEEDSDHDVKEPIL QEETYEVEEEAGSFSPELLHGDENEEAIDPEEDRAILERKRMAVLEEQQRRMQEAMAA KPTPSEDNFELKAMKAMGAMEEGDAVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVH TGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPAFTIEKDGNSTETCII RFHAGPPYEDIAFRIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRR" gene complement(4153730..4155530) /locus_tag="TCM_022367" /note="dbxref CacaoGD:Thecc1EG022367" mRNA complement(join(4153730..4154401,4154477..4155208, 4155324..4155530)) /locus_tag="TCM_022367" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035385t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.31 coverage" CDS complement(join(4154133..4154401,4154477..4155208, 4155324..4155387)) /locus_tag="TCM_022367" /note="paralog of Thecc1EG035385t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08046.1" /translation="MDSRKERNGCGGWLLGDILSDAYCRKVLSSVGSRNKTTLWKWVW GTSPHKVEAFMWQLMHGRTAVKAELLQRGLLSENNALCSLCKNNIKTVDHLFVNCDKL WIIWYSCCRQRGVTWVMPRGIKELVVIWNATCLNNGDKRIWVLTPFAISWTIWLYQND VVFQNSCWNSKQVWDLIHLRIATWANVNWPNQHGSLLDVYRHPNSHAIQNTDTRRSAA TNWNRPIGQKLKYNVAGPANGSQGEAGIGGMLRSENGVVLARFSKNIVGKFSLVIESD SLNAVKWVKSPNDAPWRLRKWILHIESSKKMVGDCEICHVLREGNKAADKLAKGAIQR VPDLMETSDDLEHGLAIDIE" gene complement(4160003..4162855) /locus_tag="TCM_022369" /note="dbxref CacaoGD:Thecc1EG022369" mRNA complement(4160003..4162855) /locus_tag="TCM_022369" /product="Kinase family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033727001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042743t1" /inference="similar to AA sequence:ricco:30078.m002210" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.95 coverage" CDS complement(4160713..4162635) /locus_tag="TCM_022369" /note="dbxref ricco:30078.m002210; paralog of Thecc1EG042743t1" /codon_start=1 /product="Kinase family protein" /protein_id="EOY08047.1" /db_xref="TAIR:AT5G02070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SE04" /translation="MISTELNGKPLFICIFIFCLLLLGHHCSSQRTCPSCGSIEIPYP LSTHPNCGDPGYSLRCDSQSQKLFFDALNGSSYLVTRIMASFHRMVVQPSPWLPSKCV TQDMPVSEGLWLNQTLPFNITSSNTIFLFNCSPRLLVSPLNCTPTSLCHRYLESSGHV EAKRALQCASGLDLCCTFTAGGMPSAYKIRLHSSGCKGFRSILHLDPEKPANEWEEGL EIQWAPPPEPVCQSQPDCSGPSKCSPAGAKGLSRCLCNEGYNWDPVLGTCLRKKRNNR ASVGLKVSVGVISFFTLALATAAITYRKCWRNSNQAKLMKVREDMLKSSNGGKPAKMF RLKEVKKATNGFSRDRVLGSGGFGEVYKGELPDGTVVAVKSAKVGNIKSTEQVLNEVG ILSQVNHKNLVRLLGCCVEAEQPLMIYEYISNGTLYDHLHGKYSTFLDWKTRLKIALQ TAEALAYLHSAAYTPIYHRDVKSTNILLDGDFNAKVSDFGLSRLASPGLSHVSTCAQG TLGYLDPEYYRNYQLTDKSDVYSYGVVLLELLTSQRAIDFSRDQDDVNLAIYVSQRAS DGAIMEVMDQRLLGEEPSVNMRKSVKLFSELAFVCLGEKKADRPGMKAVVQNLQCIIQ IIDQENVDKEVSVEIM" gene complement(4163342..4168561) /locus_tag="TCM_022370" /note="dbxref CacaoGD:Thecc1EG022370" mRNA complement(join(4163342..4163694,4163825..4163865, 4164783..4164860,4165241..4165330,4166499..4166573, 4167378..4167435,4167863..4167918,4168008..4168063, 4168156..4168296,4168403..4168561)) /locus_tag="TCM_022370" /product="FKBP-like peptidyl-prolyl cis-trans isomerase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033728001" /inference="similar to AA sequence:Phytozome:GSVIVT01033728001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2564t3" mRNA complement(join(4163439..4163694,4163825..4163865, 4164783..4164860,4165241..4165330,4167378..4167435, 4167863..4167918,4168008..4168063,4168156..4168296, 4168403..4168517)) /locus_tag="TCM_022370" /product="FKBP-like peptidyl-prolyl cis-trans isomerase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033728001" /inference="similar to AA sequence:Phytozome:GSVIVT01033728001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1563t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2564t3" CDS complement(join(4163667..4163694,4163825..4163865, 4164783..4164860,4165241..4165330,4167378..4167435, 4167863..4167918,4168008..4168063,4168156..4168296, 4168403..4168481)) /locus_tag="TCM_022370" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="FKBP-like peptidyl-prolyl cis-trans isomerase family protein isoform 2" /protein_id="EOY08049.1" /db_xref="Phytozome:GSVIVT01033728001" /db_xref="TAIR:AT3G10060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SR70" /translation="MELSLFPSHQNSLTLLHKPLFSVPFSGKRLPKKSSFLLPCLCTL SSSDDTSKPAILSLQDEGRRALVGSLLTAAAAMYVCDVAEAVSTSRRALRGAKIPESE FTTLPNGLKYYDLKVGSGLKAVKGSRVAPYGFDVGQSERGNVLKGLDVGVEGMRVGGQ RLLIVPPELAYGKKGVQEIPPNATIELDVELLAIKQSPFGTPVKVIEG" CDS complement(join(4163667..4163694,4163825..4163865, 4164783..4164860,4165241..4165330,4166499..4166573, 4167378..4167435,4167863..4167918,4168008..4168063, 4168156..4168296,4168403..4168481)) /locus_tag="TCM_022370" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="FKBP-like peptidyl-prolyl cis-trans isomerase family protein isoform 1" /protein_id="EOY08048.1" /db_xref="Phytozome:GSVIVT01033728001" /db_xref="TAIR:AT3G10060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SR70" /translation="MELSLFPSHQNSLTLLHKPLFSVPFSGKRLPKKSSFLLPCLCTL SSSDDTSKPAILSLQDEGRRALVGSLLTAAAAMYVCDVAEAVSTSRRALRGAKIPESE FTTLPNGLKYYDLKVGSGLKAVKGSRVAVHYVAKWRGITFMTSRQGLGVGGGTPYGFD VGQSERGNVLKGLDVGVEGMRVGGQRLLIVPPELAYGKKGVQEIPPNATIELDVELLA IKQSPFGTPVKVIEG" gene complement(4168886..4170940) /locus_tag="TCM_022371" /note="dbxref CacaoGD:Thecc1EG022371" mRNA complement(join(4168886..4169610,4169706..4170940)) /locus_tag="TCM_022371" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033729001" /inference="similar to AA sequence:frave:gene30079" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2562t1" CDS complement(join(4169125..4169610,4169706..4170551)) /locus_tag="TCM_022371" /note="dbxref frave:gene30079" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08050.1" /db_xref="TAIR:AT2G36650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H642" /translation="MESSSSKSEVIKPVILKAGIPLALSVAGFIYARIIAKRRIHPEV SSFETQVSPLETDSQEELRGEGSLNSTSSTSREDEDKIVTSTHFMNLIRSAEIQERTA YEEEILGLRTRVEELQKREWELKRQFLRFCDLKEQESVLMELRNMLLLETFYVEFLDR EISSMEAENERVKNIVMEYLRVVEQLEHWKTQNGLLQRKAKRLLRKTKGQAKIIREKN LKIDAKDAEIKRNGDILEGRSNDIKKLEDEVRELKSLTDQLQEQKNELSRKLDLAENS HSSISKSEEEAVTVEEYNQLENEYEQVQEDRAAELKELIYLRWCNACLRYELKRYQLL QDYIQENKDHLEQESEEVGEIVGLRVEQQLNGPALMEQGEPCLGATTSGQVCSKRQKL LKKFKKWVEGSEKMKSKLDEKEKHESKCFGRHPVSDEGEHLVPARRSCSSV" gene <4174344..4180158 /locus_tag="TCM_022372" /note="dbxref CacaoGD:Thecc1EG022372" mRNA join(<4174344..4175066,4175552..4175696,4178021..4178271, 4178361..4178431,4178515..4178632,4178728..4178862, 4178953..4180158) /locus_tag="TCM_022372" /product="L-O-methylthreonine resistant 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s11980.1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400069232" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc43t8; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13515t1" CDS join(<4174344..4175066,4175552..4175696,4178021..4178271, 4178361..4178431,4178515..4178632,4178728..4178862, 4178953..4179093) /locus_tag="TCM_022372" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="L-O-methylthreonine resistant 1 isoform 2" /protein_id="EOY08052.1" /db_xref="Phytozome:PGSC0003DMP400069232" /db_xref="TAIR:AT3G10050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTL7" /translation="HLPSRHPHCTKPVPSSKTYFHTCHSFIGPIYPLQKLRQKNPFLL CLIKSAPKAASENAFCFVHRFFFFFSNFILFLFVIFVKLKLMDALRLIPPQPPLLRHK ERVAQTSFPWPHVSKKCIIRPWIRAAVSKPTAEISSPNVTSRENAVVSSSSSSFAEVS SAPPKKVSANSLQYPSGYLGAAPERSKDEGNGDVINAMGYLTNILSSKVYDVAIESPL QSATKLSERLGNQVWLKREDLQPVFSFKLRGAYNMMAKLPKGQLERGVICSSAGNHAQ GVALAAKRLGCNAEDMFEEKRSILEPAGALALAGAEAYCKYYGLKGKNIVAITSGANM NFDKLRVVTELANVGRQQEAVLATILPEEPGSFKQFCELVGPMNITEFKYRCSSEKEA VVLYSVGVHTVSELGTMKQRMESSQLRTYNLTASDLVKDHLRYLMGGRLNVENEVLCR FIFPERPGALMKFLDTFSPRWNISLFHYRGQGETGANVLVGIQVAKGEMEEFHHLADR LGYDYVLVTDDKDFQLLMH" mRNA join(4174510..4175066,4175552..4175731,4175814..4176083, 4177207..4177413,4178023..4178271,4178361..4178431, 4178515..4178632,4178728..4178862,4178953..4179907) /locus_tag="TCM_022372" /product="L-O-methylthreonine resistant 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s11980.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s11980.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13515t1" CDS join(4174599..4175066,4175552..4175731,4175814..4176083, 4177207..4177413,4178023..4178271,4178361..4178431, 4178515..4178632,4178728..4178862,4178953..4179093) /locus_tag="TCM_022372" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="L-O-methylthreonine resistant 1 isoform 1" /protein_id="EOY08051.1" /db_xref="Phytozome:POPTR_0006s11980.1" /db_xref="TAIR:AT3G10050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTL7" /translation="MDALRLIPPQPPLLRHKERVAQTSFPWPHVSKKCIIRPWIRAAV SKPTAEISSPNVTSRENAVVSSSSSSFAEVSSAPPKKVSANSLQYPSGYLGAAPERSK DEGNGDVINAMGYLTNILSSKVYDVAIESPLQSATKLSERLGNQVWLKREDLQPVFSF KLRGAYNMMAKLPKGQLERGVICSSAGNHAQGVALAAKRLGCNAVVAMPVTTPEIKWQ SVKSLGATVVLVGDSYDEAQAYAKKRATEEGRTFIPPFDHPDVIMGQGTVGMEIVRQM QGPLHAIFVPVGGGGLVAGIAAYVKRVAPEVKIIGVEPFDANAMALSLHHGERVMLDQ VGGFADGVAVKEVGEETFRLCRELVDGVVLVSRDAICASIKDMFEEKRSILEPAGALA LAGAEAYCKYYGLKGKNIVAITSGANMNFDKLRVVTELANVGRQQEAVLATILPEEPG SFKQFCELVGPMNITEFKYRCSSEKEAVVLYSVGVHTVSELGTMKQRMESSQLRTYNL TASDLVKDHLRYLMGGRLNVENEVLCRFIFPERPGALMKFLDTFSPRWNISLFHYRGQ GETGANVLVGIQVAKGEMEEFHHLADRLGYDYVLVTDDKDFQLLMH" gene 4180285..4183352 /locus_tag="TCM_022373" /note="dbxref CacaoGD:Thecc1EG022373" mRNA join(4180285..4180916,4181118..4181528,4181614..4181744, 4181856..4182089,4182366..4182621,4182898..4183352) /locus_tag="TCM_022373" /product="GDSL-like Lipase/Acylhydrolase family protein" /inference="alignment:exonerate- protein:2:ricco:29815.m000492" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041540t1" /inference="similar to AA sequence:ricco:29815.m000492" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g09306t00001" CDS join(4180745..4180916,4181118..4181528,4181614..4181744, 4181856..4182089,4182366..4182621,4182898..4183091) /locus_tag="TCM_022373" /note="dbxref ricco:29815.m000492; paralog of Thecc1EG041540t1" /codon_start=1 /product="GDSL-like Lipase/Acylhydrolase family protein" /protein_id="EOY08053.1" /db_xref="TAIR:AT5G03810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZC5" /translation="MGLKEIKRGDHLLILSLGMHVPCFLDNFFKTRQLFNVMQKSGRI SKEEQTLSEVLYKRHLSHLDHHSPWLLPSLNSPSPAPLSPHSLLFYTSLFLYHIHTLC FTVGAVGKKEEKNMRVSSSFLASLVLVLVFLVANGDPLVPAVIIFGDSVVDVGNNNNL NTLIKANFPPYGRDFVTHRPTGRFCNGKLATDFTAEYLGFTSYPPAYLSRDARGNDLL TGANFASAASGLYDRTANLYRAIPLTQQLNYYKEYQTKVVNTVGKAKANDIFAGAIHL LSAGSSDYIQNYYINPMLNRVYTPDQFSDILIRSYSTFIQDLYGLGARRIGVTTLPPT GCLPAAITLFGGGSNQCVTRLNQDAVAFNKKLNNTSESLLDKMPGLKLVVFDIYQPLL DMVMKPADNGFFESRRACCGTGTLETSLLCNDRSLGTCTNATSYVFWDGFHPSEAANQ VLAGNLLAQGVSLIS" gene complement(4182594..4191105) /locus_tag="TCM_022374" /note="dbxref CacaoGD:Thecc1EG022374" mRNA complement(join(4182594..4182630,4183830..4184009, 4184141..4184230,4184550..4184666,4184786..4184893, 4185043..4185135,4185219..4185389,4186484..4186736, 4186824..4187102,4187386..4187720,4187800..4188786, 4189518..4190110,4190273..4190513,4190599..4190721, 4190845..4190950)) /locus_tag="TCM_022374" /product="E3 ubiquitin-protein ligase UPL7 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033734001" /inference="similar to AA sequence:ricco:29815.m000491" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1307t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2635t1" mRNA complement(join(4182594..4182630,4183529..4183531, 4183575..4183856,4184548..4184666,4184786..4184893, 4185043..4185135,4185219..4185389,4186484..4186736, 4186824..4187102,4187386..4187720,4187800..4188786, 4189518..4190110,4190273..4190513,4190599..4190721, 4190845..4190950)) /locus_tag="TCM_022374" /product="E3 ubiquitin-protein ligase UPL7 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033734001" /inference="similar to AA sequence:ricco:29815.m000491" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1307t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2635t1" mRNA complement(join(4183423..4183940,4184141..4184230, 4184550..4184666,4184786..4184893,4185043..4185135, 4185219..4185389,4186484..4186736,4186824..4187102, 4187386..4187720,4187800..4188786,4189518..4190110, 4190273..4190513,4190599..4190721,4190845..4191105)) /locus_tag="TCM_022374" /product="Ubiquitin-protein ligase 7 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033734001" /inference="similar to AA sequence:Phytozome:GSVIVT01033734001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2635t1" mRNA complement(join(4183423..4183940,4184141..4184230, 4184550..4185135,4185219..4185389,4186484..4186736, 4186824..4187102,4187386..4187720,4187800..4188786, 4189518..4190110,4190273..4190513,4190599..4190721, 4190845..4191105)) /locus_tag="TCM_022374" /product="E3 ubiquitin-protein ligase UPL7 isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033734001" /inference="similar to AA sequence:Phytozome:GSVIVT01033734001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:PASA:2:TSA:puevd3b021658t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2635t1" mRNA complement(join(4183574..4183940,4184141..4184230, 4184550..4184657,4186484..4186736,4186824..4187102, 4187386..4187720,4187800..4188786,4189518..4190110, 4190273..4190513,4190599..4190721,4190845..4190950)) /locus_tag="TCM_022374" /product="E3 ubiquitin-protein ligase UPL7 isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033734001" /inference="similar to AA sequence:Phytozome:GSVIVT01033734001" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1292t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2635t1" CDS complement(join(4183826..4183856,4184548..4184666, 4184786..4184893,4185043..4185135,4185219..4185389, 4186484..4186736,4186824..4187102,4187386..4187720, 4187800..4188786,4189518..4190110,4190273..4190513, 4190599..4190721,4190845..4190868)) /locus_tag="TCM_022374" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29815.m000491" /codon_start=1 /product="E3 ubiquitin-protein ligase UPL7 isoform 4" /protein_id="EOY08057.1" /db_xref="TAIR:AT3G53090.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SCQ2" /translation="MEEPRKHQVSLRGASAKEISRDALLEKVSQERENRNYARRAASA AIFIQRVWRSYNVTMKVAIKLQEEWESFVKNQAELMTANLISSSVLRPFIFFITCLSI RRRKILARVSNCMQTCFKILLESINSTDSKKNFCSLAVGTMEERRTLTYQAQKLISLC SFVLAQCDTSHGGGQDLVILTSLALRLVVVLTDLKSWKIVSDDNIGNADATVKNLVCF MGSYKGGLYVSMRRYISKLDVCFSPEVKNIVQTDDKFLITASAISLAIRPFSLTTFDA TCPGQFDVHSAVEQYCLFLLTIPWLTQRLPAVLLPALKHKSILSPCLHSLLISRDKIV GKMSEIDQSDMDCSSKAIPQVGWALSNVICLASGSENDFLDSRVLNQGQEYASYVHVV TILADNLLEWLHNVGWNEKGNQNLEGNNEAHVEPVSAVMQESETACGSLKTSYMDLFR PVCQQWHLKKLLSLSERYAHTDEAKILPPNSLECLGNLELLHIAYFYSYMLRIFAAFN PMVGPLTVLNMLSFTPGFLGNLWGVLESSIFRGNSHTIGDSYHGTNKVSGKKKEGIDK KLKQANKDGVNKWVNVLQKFTGKSQADVDFADSVDDHLVDDDSVDVWDIEPLRHGPQG ISKDMSCLLHLFCATYSHLLLVLDDIEFYEKQVPFTLEQQRRIASVLNTLVYNGLSCS VGQQNGSFMESAIRCLHLIYERDCRHQFCPPVLWLSPARRSRPPIAVAARTHEVLSAN IRPEDATVVHSTGSVITSMPHVFPFEERVQMFREFINMDKVSRKMAGEVAGPGSRSVE IVIRRGHIVEDGFRQLNSLGSRLKSSIHVSFVSECGLPEAGLDYGGLSKEFLTDISKE AFAPEYGLFSQTSTSDRLLIPNPAARYLENGIQMIEFLGRVVGKALYEGILLDYSFSH VFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDIKELCLDFTITEESFGKRHVIE LKPGGKDVCVTNENKMQYVHAMADYKLNRQILPFSNAFYRGLTDLISPSWLKLFNASE LNQLLSGGDHDIDVDDLRNNTRYTGGYSEGSRTIKLFWQVMKDFEPKERCMLLKFVTS CSRAPLLGFKFLQPSFTIHKVDLKPFNRCR" CDS complement(join(4183857..4183940,4184141..4184230, 4184550..4184657,4186484..4186736,4186824..4187102, 4187386..4187720,4187800..4188786,4189518..4190110, 4190273..4190513,4190599..4190721,4190845..4190868)) /locus_tag="TCM_022374" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="E3 ubiquitin-protein ligase UPL7 isoform 6" /protein_id="EOY08059.1" /db_xref="Phytozome:GSVIVT01033734001" /db_xref="TAIR:AT3G53090.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SCQ2" /translation="MEEPRKHQVSLRGASAKEISRDALLEKVSQERENRNYARRAASA AIFIQRVWRSYNVTMKVAIKLQEEWESFVKNQAELMTANLISSSVLRPFIFFITCLSI RRRKILARVSNCMQTCFKILLESINSTDSKKNFCSLAVGTMEERRTLTYQAQKLISLC SFVLAQCDTSHGGGQDLVILTSLALRLVVVLTDLKSWKIVSDDNIGNADATVKNLVCF MGSYKGGLYVSMRRYISKLDVCFSPEVKNIVQTDDKFLITASAISLAIRPFSLTTFDA TCPGQFDVHSAVEQYCLFLLTIPWLTQRLPAVLLPALKHKSILSPCLHSLLISRDKIV GKMSEIDQSDMDCSSKAIPQVGWALSNVICLASGSENDFLDSRVLNQGQEYASYVHVV TILADNLLEWLHNVGWNEKGNQNLEGNNEAHVEPVSAVMQESETACGSLKTSYMDLFR PVCQQWHLKKLLSLSERYAHTDEAKILPPNSLECLGNLELLHIAYFYSYMLRIFAAFN PMVGPLTVLNMLSFTPGFLGNLWGVLESSIFRGNSHTIGDSYHGTNKVSGKKKEGIDK KLKQANKDGVNKWVNVLQKFTGKSQADVDFADSVDDHLVDDDSVDVWDIEPLRHGPQG ISKDMSCLLHLFCATYSHLLLVLDDIEFYEKQVPFTLEQQRRIASVLNTLVYNGLSCS VGQQNGSFMESAIRCLHLIYERDCRHQFCPPVLWLSPARRSRPPIAVAARTHEVLSAN IRPEDATVVHSTGSVITSMPHVFPFEERVQMFREFINMDKVSRKMAGEVAGPGSRSVE IVIRRGHIVEDGFRQLNSLGSRLKSSIHVSFVSECGLPEAGLDYGGLSKEFLTDISKE AFAPEYGLFSQTSTSDRLLIPNPAARYLENGIQMIEFLGRVVGKALYEGILLDYSFSH VFVQKLLGRYSFLDELSTLDPELYRNLMYVKDFEPKERCMLLKFVTSCSRAPLLGFKF LQPSFTIHKVASDAPLWATIGGPDVERLPSASTCYNTLKLPTYKRSSTLKAKLRYAIS SNAGFELS" CDS complement(join(4183857..4183940,4184141..4184230, 4184550..4184666,4184786..4184893,4185043..4185135, 4185219..4185389,4186484..4186736,4186824..4187102, 4187386..4187720,4187800..4188786,4189518..4190110, 4190273..4190513,4190599..4190721,4190845..4190868)) /locus_tag="TCM_022374" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Ubiquitin-protein ligase 7 isoform 1" /protein_id="EOY08054.1" /db_xref="Phytozome:GSVIVT01033734001" /db_xref="TAIR:AT3G53090.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SCQ2" /translation="MEEPRKHQVSLRGASAKEISRDALLEKVSQERENRNYARRAASA AIFIQRVWRSYNVTMKVAIKLQEEWESFVKNQAELMTANLISSSVLRPFIFFITCLSI RRRKILARVSNCMQTCFKILLESINSTDSKKNFCSLAVGTMEERRTLTYQAQKLISLC SFVLAQCDTSHGGGQDLVILTSLALRLVVVLTDLKSWKIVSDDNIGNADATVKNLVCF MGSYKGGLYVSMRRYISKLDVCFSPEVKNIVQTDDKFLITASAISLAIRPFSLTTFDA TCPGQFDVHSAVEQYCLFLLTIPWLTQRLPAVLLPALKHKSILSPCLHSLLISRDKIV GKMSEIDQSDMDCSSKAIPQVGWALSNVICLASGSENDFLDSRVLNQGQEYASYVHVV TILADNLLEWLHNVGWNEKGNQNLEGNNEAHVEPVSAVMQESETACGSLKTSYMDLFR PVCQQWHLKKLLSLSERYAHTDEAKILPPNSLECLGNLELLHIAYFYSYMLRIFAAFN PMVGPLTVLNMLSFTPGFLGNLWGVLESSIFRGNSHTIGDSYHGTNKVSGKKKEGIDK KLKQANKDGVNKWVNVLQKFTGKSQADVDFADSVDDHLVDDDSVDVWDIEPLRHGPQG ISKDMSCLLHLFCATYSHLLLVLDDIEFYEKQVPFTLEQQRRIASVLNTLVYNGLSCS VGQQNGSFMESAIRCLHLIYERDCRHQFCPPVLWLSPARRSRPPIAVAARTHEVLSAN IRPEDATVVHSTGSVITSMPHVFPFEERVQMFREFINMDKVSRKMAGEVAGPGSRSVE IVIRRGHIVEDGFRQLNSLGSRLKSSIHVSFVSECGLPEAGLDYGGLSKEFLTDISKE AFAPEYGLFSQTSTSDRLLIPNPAARYLENGIQMIEFLGRVVGKALYEGILLDYSFSH VFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDIKELCLDFTITEESFGKRHVIE LKPGGKDVCVTNENKMQYVHAMADYKLNRQILPFSNAFYRGLTDLISPSWLKLFNASE LNQLLSGGDHDIDVDDLRNNTRYTGGYSEGSRTIKLFWQVMKDFEPKERCMLLKFVTS CSRAPLLGFKFLQPSFTIHKVASDAPLWATIGGPDVERLPSASTCYNTLKLPTYKRSS TLKAKLRYAISSNAGFELS" mRNA complement(join(<4183913..4183940,4184141..4184230, 4184550..4184666,4184786..4184893,4185043..4185135, 4185219..4185389,4186484..4186736,4186824..4187102, 4187386..4187720,4187800..4188786,4189518..4190110, 4190273..4190513,4190599..4190721,4190845..4190950)) /locus_tag="TCM_022374" /product="E3 ubiquitin-protein ligase UPL7 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033734001" /inference="similar to AA sequence:Phytozome:GSVIVT01033734001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1307t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2635t1" CDS complement(join(<4183914..4183940,4184141..4184230, 4184550..4184666,4184786..4184893,4185043..4185135, 4185219..4185389,4186484..4186736,4186824..4187102, 4187386..4187720,4187800..4188786,4189518..4190110, 4190273..4190513,4190599..4190721,4190845..4190868)) /locus_tag="TCM_022374" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="E3 ubiquitin-protein ligase UPL7 isoform 3" /protein_id="EOY08056.1" /db_xref="Phytozome:GSVIVT01033734001" /db_xref="TAIR:AT3G53090.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SCQ2" /translation="MEEPRKHQVSLRGASAKEISRDALLEKVSQERENRNYARRAASA AIFIQRVWRSYNVTMKVAIKLQEEWESFVKNQAELMTANLISSSVLRPFIFFITCLSI RRRKILARVSNCMQTCFKILLESINSTDSKKNFCSLAVGTMEERRTLTYQAQKLISLC SFVLAQCDTSHGGGQDLVILTSLALRLVVVLTDLKSWKIVSDDNIGNADATVKNLVCF MGSYKGGLYVSMRRYISKLDVCFSPEVKNIVQTDDKFLITASAISLAIRPFSLTTFDA TCPGQFDVHSAVEQYCLFLLTIPWLTQRLPAVLLPALKHKSILSPCLHSLLISRDKIV GKMSEIDQSDMDCSSKAIPQVGWALSNVICLASGSENDFLDSRVLNQGQEYASYVHVV TILADNLLEWLHNVGWNEKGNQNLEGNNEAHVEPVSAVMQESETACGSLKTSYMDLFR PVCQQWHLKKLLSLSERYAHTDEAKILPPNSLECLGNLELLHIAYFYSYMLRIFAAFN PMVGPLTVLNMLSFTPGFLGNLWGVLESSIFRGNSHTIGDSYHGTNKVSGKKKEGIDK KLKQANKDGVNKWVNVLQKFTGKSQADVDFADSVDDHLVDDDSVDVWDIEPLRHGPQG ISKDMSCLLHLFCATYSHLLLVLDDIEFYEKQVPFTLEQQRRIASVLNTLVYNGLSCS VGQQNGSFMESAIRCLHLIYERDCRHQFCPPVLWLSPARRSRPPIAVAARTHEVLSAN IRPEDATVVHSTGSVITSMPHVFPFEERVQMFREFINMDKVSRKMAGEVAGPGSRSVE IVIRRGHIVEDGFRQLNSLGSRLKSSIHVSFVSECGLPEAGLDYGGLSKEFLTDISKE AFAPEYGLFSQTSTSDRLLIPNPAARYLENGIQMIEFLGRVVGKALYEGILLDYSFSH VFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDIKELCLDFTITEESFGKRHVIE LKPGGKDVCVTNENKMQYVHAMADYKLNRQILPFSNAFYRGLTDLISPSWLKLFNASE LNQLLSGGDHDIDVDDLRNNTRYTGGYSEGSRTIKLFWQVMKDFEPKERCMLLKFVTS CSRAPLLGFKFLQPSFTIHKVASDAPLWATIGGPDVERLPSASTCYNTLKLPTYKRSS T" CDS complement(join(4183992..4184009,4184141..4184230, 4184550..4184666,4184786..4184893,4185043..4185135, 4185219..4185389,4186484..4186736,4186824..4187102, 4187386..4187720,4187800..4188786,4189518..4190110, 4190273..4190513,4190599..4190721,4190845..4190868)) /locus_tag="TCM_022374" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29815.m000491" /codon_start=1 /product="E3 ubiquitin-protein ligase UPL7 isoform 2" /protein_id="EOY08055.1" /db_xref="TAIR:AT3G53090.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SCQ2" /translation="MEEPRKHQVSLRGASAKEISRDALLEKVSQERENRNYARRAASA AIFIQRVWRSYNVTMKVAIKLQEEWESFVKNQAELMTANLISSSVLRPFIFFITCLSI RRRKILARVSNCMQTCFKILLESINSTDSKKNFCSLAVGTMEERRTLTYQAQKLISLC SFVLAQCDTSHGGGQDLVILTSLALRLVVVLTDLKSWKIVSDDNIGNADATVKNLVCF MGSYKGGLYVSMRRYISKLDVCFSPEVKNIVQTDDKFLITASAISLAIRPFSLTTFDA TCPGQFDVHSAVEQYCLFLLTIPWLTQRLPAVLLPALKHKSILSPCLHSLLISRDKIV GKMSEIDQSDMDCSSKAIPQVGWALSNVICLASGSENDFLDSRVLNQGQEYASYVHVV TILADNLLEWLHNVGWNEKGNQNLEGNNEAHVEPVSAVMQESETACGSLKTSYMDLFR PVCQQWHLKKLLSLSERYAHTDEAKILPPNSLECLGNLELLHIAYFYSYMLRIFAAFN PMVGPLTVLNMLSFTPGFLGNLWGVLESSIFRGNSHTIGDSYHGTNKVSGKKKEGIDK KLKQANKDGVNKWVNVLQKFTGKSQADVDFADSVDDHLVDDDSVDVWDIEPLRHGPQG ISKDMSCLLHLFCATYSHLLLVLDDIEFYEKQVPFTLEQQRRIASVLNTLVYNGLSCS VGQQNGSFMESAIRCLHLIYERDCRHQFCPPVLWLSPARRSRPPIAVAARTHEVLSAN IRPEDATVVHSTGSVITSMPHVFPFEERVQMFREFINMDKVSRKMAGEVAGPGSRSVE IVIRRGHIVEDGFRQLNSLGSRLKSSIHVSFVSECGLPEAGLDYGGLSKEFLTDISKE AFAPEYGLFSQTSTSDRLLIPNPAARYLENGIQMIEFLGRVVGKALYEGILLDYSFSH VFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDIKELCLDFTITEESFGKRHVIE LKPGGKDVCVTNENKMQYVHAMADYKLNRQILPFSNAFYRGLTDLISPSWLKLFNASE LNQLLSGGDHDIDVDDLRNNTRYTGGYSEGSRTIKLFWQVMKDFEPKERCMLLKFVTS CSRAPLLGFKFLQPSFTIHKVASDAPLWATIGGPDVERLPSASTCYNTLKRGRGY" CDS complement(join(4185007..4185135,4185219..4185389, 4186484..4186736,4186824..4187102,4187386..4187720, 4187800..4188786,4189518..4190110,4190273..4190513, 4190599..4190721,4190845..4190868)) /locus_tag="TCM_022374" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="E3 ubiquitin-protein ligase UPL7 isoform 5" /protein_id="EOY08058.1" /db_xref="Phytozome:GSVIVT01033734001" /db_xref="TAIR:AT3G53090.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SCQ2" /translation="MEEPRKHQVSLRGASAKEISRDALLEKVSQERENRNYARRAASA AIFIQRVWRSYNVTMKVAIKLQEEWESFVKNQAELMTANLISSSVLRPFIFFITCLSI RRRKILARVSNCMQTCFKILLESINSTDSKKNFCSLAVGTMEERRTLTYQAQKLISLC SFVLAQCDTSHGGGQDLVILTSLALRLVVVLTDLKSWKIVSDDNIGNADATVKNLVCF MGSYKGGLYVSMRRYISKLDVCFSPEVKNIVQTDDKFLITASAISLAIRPFSLTTFDA TCPGQFDVHSAVEQYCLFLLTIPWLTQRLPAVLLPALKHKSILSPCLHSLLISRDKIV GKMSEIDQSDMDCSSKAIPQVGWALSNVICLASGSENDFLDSRVLNQGQEYASYVHVV TILADNLLEWLHNVGWNEKGNQNLEGNNEAHVEPVSAVMQESETACGSLKTSYMDLFR PVCQQWHLKKLLSLSERYAHTDEAKILPPNSLECLGNLELLHIAYFYSYMLRIFAAFN PMVGPLTVLNMLSFTPGFLGNLWGVLESSIFRGNSHTIGDSYHGTNKVSGKKKEGIDK KLKQANKDGVNKWVNVLQKFTGKSQADVDFADSVDDHLVDDDSVDVWDIEPLRHGPQG ISKDMSCLLHLFCATYSHLLLVLDDIEFYEKQVPFTLEQQRRIASVLNTLVYNGLSCS VGQQNGSFMESAIRCLHLIYERDCRHQFCPPVLWLSPARRSRPPIAVAARTHEVLSAN IRPEDATVVHSTGSVITSMPHVFPFEERVQMFREFINMDKVSRKMAGEVAGPGSRSVE IVIRRGHIVEDGFRQLNSLGSRLKSSIHVSFVSECGLPEAGLDYGGLSKEFLTDISKE AFAPEYGLFSQTSTSDRLLIPNPAARYLENGIQMIEFLGRVVGKALYEGILLDYSFSH VFVQKLLGRYSFLDELSTLDPELYRNLMYVKHYDGDIKELCLDFTITEESFGKRHVIE LKPGGKDVCVTNENKMQYVHAMADYKLNRQILPFSNAFYRGLTDLISPSWLKLFNASE LNQVFSLQMCFMEL" gene complement(<4189518..4196075) /locus_tag="TCM_022376" /note="dbxref CacaoGD:Thecc1EG022376" mRNA complement(join(<4189518..4189609,4192954..4193445, 4196050..4196075)) /locus_tag="TCM_022376" /product="Uncharacterized protein isoform 2" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog weak, intron is weak, protein is partial3; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1600t3_C1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1600t5" CDS complement(join(<4189518..4189609,4192954..4193182)) /locus_tag="TCM_022376" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY08061.1" /translation="MVAEEWVVLGMDNGGHGLRQNSEAPNITSYFHLVFDSVYIRLII LYLSSYMFVPRAFRICLNTQKQKIKGIDKVSCSIPWLTQRLPAVLLPALKHKSILSPC LHSLL" gene 4192031..4192781 /locus_tag="TCM_022375" /note="dbxref CacaoGD:Thecc1EG022375" mRNA 4192031..4192781 /locus_tag="TCM_022375" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.61 coverage" CDS 4192084..4192323 /locus_tag="TCM_022375" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08062.1" /translation="MKRFSVTIDEELFNKHNEPDKASIVYVLEIKQKYDAYRDMQMYG QEMEDSTCSTRGKRARRLIGKERDKQGNTAFNELE" mRNA complement(join(4192836..4193445,4196050..4196061)) /locus_tag="TCM_022376" /product="Uncharacterized protein isoform 1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1600t5" gene 4192891..4199188 /locus_tag="TCM_022377" /note="dbxref CacaoGD:Thecc1EG022377" mRNA join(4192891..4193259,4196100..4199188) /locus_tag="TCM_022377" /product="Pentatricopeptide repeat (PPR) superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033735001" /inference="similar to AA sequence:Phytozome:GSVIVT01033735001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1574t1" CDS complement(4192910..4193182) /locus_tag="TCM_022376" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY08060.1" /translation="MVAEEWVVLGMDNGGHGLRQNSEAPNITSYFHLVFDSVYIRLII LYLSSYMFVPRAFRICLNTQKQKIKGIDKVSCSHFHKLNVTSTTYV" CDS 4196326..4198956 /locus_tag="TCM_022377" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein, putative" /protein_id="EOY08063.1" /db_xref="Phytozome:GSVIVT01033735001" /db_xref="TAIR:AT5G03800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FFN1" /translation="MSTVIHPQNHPLRRHHFPPKPPPPPPHPSLSLPKPKSHHRHLLL SSTTSLPRHTLSKPLIFNDINSPLSLLHLSVQHSDADLAKAVHACSLKSQEDTHLGNS LVLAYLKLGLLNHSFKVFTFLSCPSVVTYSSLISGFAKSSQGNEAIKLFMKMRNEGIM PNEFTFVAILTACIRVLELELGFQVHGLVIKMGFLDRVFVANALMGLYGKFNGALGFV YKMFDEMPHRDVASWNTVISSLVKQGMYEKAFELSGVMQGIGSFRADFFTISTVLSAC EGSNALMKGKEVHAHAIRIGLVGNLSVNNALIGFYSKCGSVGDVVALFESMPVRDVIT WTEMISAYMEFGLVDFAVEVFDKMPEKNCVSYNALMAGFCRNGEGLKAVKLFIEMVEE GLELTDFSLSSVINACALVMDAKTSEQIHGFCVKFGFRSNACVEAALLDMCMRCGRMA DAEKMFCMWPSELDSSVVCTSMVCGYARNGQPDNAISFFLRRRLEGTMDMDDVTLTSV LGVCGTLGFEEMGEQIHCHALKIGFVSDLVVLNSVISMYAKCGNMNGAIKVFNNMPIR DVVSWNALIAGHILHRQGEEALAVWSMMEEADIKADTITLILVILAYRHTNSDLVDNC RKLFLSMKTNYNIEPTPQHYASFVSVLGRWSLLEEAEKMIDKMTAEPKASAWRALLDS CRIHLNTTIGKRVAKHILAMKPRDPPTYILVSNLYSASGRWHCSDTIREDMREKGFRK HPARSWIIHQNKVHSFYARDKSHPQTKDIYSGLEILVLECVKAGYVPDTSFVLHEVEE HQKKDFLLYHSAKLATTYGLLMSRPGEPIRIVKNILLCGDCHTFLKFVSVVTRREIFL RDASGFHCFRSGQCSCKNYW" gene 4203900..4208123 /locus_tag="TCM_022379" /note="dbxref CacaoGD:Thecc1EG022379" mRNA join(4203900..4204844,4205321..4205598,4206392..4206740, 4206855..4208123) /locus_tag="TCM_022379" /product="Exostosin family protein" /inference="alignment:exonerate-protein:2:frave:gene31235" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022382t1" /inference="similar to AA sequence:ricco:29815.m000494" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2601t2" CDS join(4204446..4204844,4205321..4205598,4206392..4206740, 4206855..4207538) /locus_tag="TCM_022379" /note="dbxref ricco:29815.m000494; paralog of Thecc1EG022382t1" /codon_start=1 /product="Exostosin family protein" /protein_id="EOY08064.1" /db_xref="TAIR:AT5G03795.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FFN2" /translation="MGDGNKNCFACCFSTTTTTSSSSSIKLLVFIVPLILVSFFVFIL VPKNSTWVLISSLPSSSSSAAAAASNGSEKVGAVAHAEGSEKVLDLRSRVGTVDVHGS LEEAALSDEAALNRPASPPLAVEAVTQIQELNETKEESLNISIPDSDRLNTSMTGIQN TTTPRNESIALPLNQSRQVRTKLDKLEAGLQRARAAIKEAKNGSLLQDPDYVPIGPMY WDAKAFHRSYLEMEKQFKIFVYKEGEPPVFHDGPCKSIYSMEGNFIHKMDVDSNFQTK DPEKAHVFYLPFSVAKMVRFVYLRDSRDFSPIRRTVVDYVNLIAEKYPYWNRSLGADH FMLACHDWGPEASFSLPYLQKNSIRALCNANTSEKFNPVKDVSIPEINLLTGKLTGLI GGPSASRRPILAFFAGGVHGPIRPILLEHWEGKDEDIRVHKYLPKGVNYYEMMKNSKY CICPSGYEVASPRIVEALYNGCVPVLISKSYVPPFSDVLRWKSFSVVVSVDDIPKLKE ILTKISSRQYIRMQRRVLQVRRHFAFNSPPKRFDVFHMILHSIWLRRLNVRISDDHGV MPN" gene complement(4208193..4208865) /locus_tag="TCM_022380" /note="dbxref CacaoGD:Thecc1EG022380" mRNA complement(4208193..4208865) /locus_tag="TCM_022380" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.17 coverage" CDS complement(4208630..4208836) /locus_tag="TCM_022380" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08065.1" /translation="MAARALRRPASSLSKLVPTLGHFGFKGRSKIDSFSLMDAVGLEF SLHVDLFHSISAPTGGGIELLMAV" mobile_element 4217166..4217495 /note="source:INTACT470_F80_scaffold_3-int 6423 6750" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4217227..4220330 /note="source:scaffold_5_CACTA_0611 2008 5090" /mobile_element_type="transposon:TIR/CACTA" gene 4217320..4222365 /locus_tag="TCM_022381" /note="dbxref CacaoGD:Thecc1EG022381" mRNA join(4217320..4217499,4220640..4220921,4221289..4221458, 4221603..4222365) /locus_tag="TCM_022381" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011209t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.32 coverage" gene 4217359..4227971 /locus_tag="TCM_022382" /note="dbxref CacaoGD:Thecc1EG022382" mRNA join(4217359..4217499,4222867..4223770,4224590..4224846, 4226570..4226915,4227009..4227971) /locus_tag="TCM_022382" /product="Exostosin family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400030375" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022379t1" /inference="similar to AA sequence:ricco:29815.m000494" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1852t4" mobile_element 4219914..4220377 /note="source:CACAO_M_E59738_F82_scaffold_9 2507 2977" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(4220699..4220921,4221289..4221458,4221603..4222205) /locus_tag="TCM_022381" /note="paralog of Thecc1EG011209t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08066.1" /translation="MTVELKALEDNGTWSIVPLPSNCNVIGYKWVYKVKLNADGNVER YKARLVVKGYNQIKGFDHQDTFNPVGQRNNKSDVKEFLKSEFKLKDLGKVKYILGLEI TRSLEGISICQRKYALDLMEEQGLLGTKLVLSQFTEKPGIHHLAAAHRVLKYIKKAPG QGILMKSKCNLRIFGYSDSDWAGCLDTRKSVTGYCIFVGDSLVSWKSKKQSVMARNSA KAECRSMAATCCEIIWLRSLMADFGINHSETVNLYSDSQSAIQISKNHVLHEKTKHIE MDCHFIRDKVLARLINPLHISTQSQLSDIFTKALQPRQFYNLLNKMNVHDIHSSS" CDS join(4223417..4223770,4224590..4224846,4226570..4226915, 4227009..4227692) /locus_tag="TCM_022382" /note="dbxref ricco:29815.m000494; paralog of Thecc1EG022379t1" /codon_start=1 /product="Exostosin family protein, putative" /protein_id="EOY08067.1" /db_xref="TAIR:AT5G03795.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FFN2" /translation="MGEGFKNWFAKTSLSLKVILFAVLLILVSGSASLFVQRRSNWAL IYAVPTSSSSNTNLAAVQRPSLHAKECDSPVDLHSEVVVSVDDHSRKEALSDEAALSK SVSPTIDAQSLQVQQFNGRNEDNPNMSISENFSSTTPLKENESIDPPLKHRRRRVYTK LDRLEDGLRKARAAIKKAMNGSQLQDPDYIPDGPIYRNAKFFHRSYLEMEKKFKIYVY KEGELPLFHDGPCRLLYTMEGQFINKMEVNKKFRTYNPEKAHVFYLPYSVTRMVQYNW VRGTPMKRLGGIVLDYVNVIAGKYPFWNRSLGADHFMLSCHDWGPATSFYVPDLVKNS IRALCNANTSERFNPMKDVSIPEISLKSSRLEGLIGGPSPSQRTILAFFAGGNHGFVR PILFRHWEKKDPAIRVHNYLPRRVPYYDLMRQSKYCLCPSGYEVASPRVVEALYNGCV PVLISKSYVPPFSDVLNWKMFSVMVSLEDIPNLKKILMSIPERQYIKMQKRVVQVRRH FELHVTPKRFDVFHMILHSIWLRRLNVKVSNEPGNILD" gene 4228955..4231098 /locus_tag="TCM_022383" /note="dbxref CacaoGD:Thecc1EG022383" mRNA join(4228955..4230180,4230328..4230959,4231031..4231098) /locus_tag="TCM_022383" /product="Embryonic DC-8-like protein" /inference="alignment:exonerate-protein:2:frave:gene30092" /inference="similar to AA sequence:frave:gene30092" /note="quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01874t00001" CDS join(4229542..4230180,4230328..4230858) /locus_tag="TCM_022383" /note="dbxref frave:gene30092" /codon_start=1 /product="Embryonic DC-8-like protein" /protein_id="EOY08068.1" /db_xref="TAIR:AT3G53040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P20075" /translation="MATRLEIEQRAEAAARQAADDLRDVNRGRVYDERVVYKEELDQS PQQQQQRPGVIGTVLRAVQGTHEHAKAAVVGKSHEAEDFTREGADLAAENTRETKDEA AERAKEYKDNTTVKEKETTDEAARKRGEYKNYAAEKAKEEAEAKDTTKEKTCEYKEYL EQKSREASEQASQASEKAEELAQRAKDTARGKAAEYKDYAAEKAKESAQKANEKAKET KDSAAQKAKETKDSAAQKAKETKDTVAGKTAEYTGYAAQTAKEATDTTTGKAAEYKDY AAEKAKEAKGTTAQMASEYTGYAAQKAREAKDTAMGKASEYKDYAAEKAKEAKDATSK KAKEAAEKAKQGSEYAAEKAKDGKDTTAEKMNEYKDYTAEKAKESKDTTVVSLGS" mobile_element complement(4231273..4231789) /note="source:INTACT726_F314_scaffold_5-int 13423 13899" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4232691..4245075 /note="source:INTACT59_F126_scaffold_9-int 1649 14077" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4245095..4245595) /note="source:INTACT726_F314_scaffold_5-int 13404 13899" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4246410..4247589 /note="source:INTACT36_F116_scaffold_6-int 3926 5085" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(4254386..4255520) /note="source:CACAO_hAT_E2876_scaffold_6 1 1136" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(4260988..4261064) /note="source:CACAO_M_S_E52577_F51_scaffold_5 1783 1859" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 4263817..4267420 /locus_tag="TCM_022388" /note="dbxref CacaoGD:Thecc1EG022388" mRNA join(4263817..4264326,4264427..4264586,4264716..4264916, 4265128..4265189,4265282..4265330,4265421..4265476, 4265764..4265814,4265909..4266148,4266431..4266524, 4266602..4266742,4266847..4267420) /locus_tag="TCM_022388" /product="Sulfite exporter TauE/SafE family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s11920.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037147t1" /inference="similar to AA sequence:ricco:29815.m000496" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:PASA:2:TSA:puevd3b021672t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2633t2" mRNA join(4263817..4264326,4264427..4264586,4264716..4264916, 4265128..4265189,4265282..4265330,4265421..4265476, 4265589..4265675,4265764..4265814,4265909..4266148, 4266431..4266524,4266602..4266742,4266847..4267395) /locus_tag="TCM_022388" /product="Sulfite exporter TauE/SafE family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s11920.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037147t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s11920.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2633t2" CDS join(4264177..4264326,4264427..4264586,4264716..4264916, 4265128..4265189,4265282..4265330,4265421..4265476, 4265589..4265675,4265764..4265814,4265909..4266148, 4266431..4266524,4266602..4266742,4266847..4266929) /locus_tag="TCM_022388" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG037147t1" /codon_start=1 /product="Sulfite exporter TauE/SafE family protein isoform 1" /protein_id="EOY08069.1" /db_xref="Phytozome:POPTR_0006s11920.1" /db_xref="TAIR:AT2G36630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8S9J0" /translation="MATRGFLLYLLSGFSVAILSVLFINKNNNMYHNSTLLHSPNVSS VDKDWPELELNWRLVLATVIGFLGSACGTVGGVGGGGIFVPMLTLIVGFDTKSAAAIS KCMIMGASASSVWYNLRVPHPTKEVPIIDYDLALLFQPMLMLGITVGVALSVVFPYWL ITVLIIILFLSTSSRSFYKATEMWKEETILKKELTRQQETLVNSRGELLIDAEYEPLV PREEKSELQILCFNLRWKRLLILATVWVLFTLIQVIKNDLVVCSTWYWVLFCLQLPIA VLVFGYEATKLYKEHKKRMSTGNREAICEASIQWSPLNIAFCALCGILGGTVGGLLGS GGGFILGPLLLEIGVIPQVASATATFVMMFSSSLSVVEFYLLKRFPIPYALYLMGVSI LAGFWGQYFVRKLITILKRASLIVFILSGVIFASALTMGVIGIDTSIQMIHNHEFMGF LDFCSSQ" CDS join(4264177..4264326,4264427..4264586,4264716..4264916, 4265128..4265189,4265282..4265330,4265421..4265476, 4265764..4265814,4265909..4266148,4266431..4266524, 4266602..4266742,4266847..4266929) /locus_tag="TCM_022388" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29815.m000496; paralog of Thecc1EG037147t1" /codon_start=1 /product="Sulfite exporter TauE/SafE family protein isoform 2" /protein_id="EOY08070.1" /db_xref="TAIR:AT2G36630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8S9J0" /translation="MATRGFLLYLLSGFSVAILSVLFINKNNNMYHNSTLLHSPNVSS VDKDWPELELNWRLVLATVIGFLGSACGTVGGVGGGGIFVPMLTLIVGFDTKSAAAIS KCMIMGASASSVWYNLRVPHPTKEVPIIDYDLALLFQPMLMLGITVGVALSVVFPYWL ITVLIIILFLSTSSRSFYKATEMWKEETILKKELTRQQETLVNSRGELLIDAEYEPLV PREEKSELNDLVVCSTWYWVLFCLQLPIAVLVFGYEATKLYKEHKKRMSTGNREAICE ASIQWSPLNIAFCALCGILGGTVGGLLGSGGGFILGPLLLEIGVIPQVASATATFVMM FSSSLSVVEFYLLKRFPIPYALYLMGVSILAGFWGQYFVRKLITILKRASLIVFILSG VIFASALTMGVIGIDTSIQMIHNHEFMGFLDFCSSQ" mobile_element 4267404..4268338 /note="source:scaffold_4_CACTA_0511 12873 13839" /mobile_element_type="transposon:TIR/CACTA" gene complement(4270745..4276499) /locus_tag="TCM_022389" /note="dbxref CacaoGD:Thecc1EG022389" mRNA complement(join(4270745..4270774,4271824..4272645, 4272732..4272779,4274603..4275571,4276040..4276499)) /locus_tag="TCM_022389" /product="Ser/arg-rich protein kinase 4 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29815.m000497" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041544t2" /inference="similar to AA sequence:ricco:29815.m000497" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc207t5_C2" mRNA complement(join(4271937..4272416,4272558..4272645, 4272732..4272779,4274603..4275571,4276040..4276435)) /locus_tag="TCM_022389" /product="Ser/arg-rich protein kinase 4 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29815.m000497" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041544t2" /inference="similar to AA sequence:ricco:29815.m000497" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc207t2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc207t5_C2" mRNA complement(join(4272099..4272416,4272558..4272645, 4272732..4272779,4274603..4275561,4276040..4276337)) /locus_tag="TCM_022389" /product="Ser/arg-rich protein kinase 4 isoform 3" /inference="alignment:exonerate- protein:2:ricco:29815.m000497" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041544t2" /inference="similar to AA sequence:ricco:29815.m000497" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc207t1_C2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc207t5_C2" CDS complement(join(4272211..4272416,4272558..4272645, 4272732..4272779,4274603..4275571,4276040..4276249)) /locus_tag="TCM_022389" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29815.m000497; paralog of Thecc1EG041544t2" /codon_start=1 /product="Ser/arg-rich protein kinase 4 isoform 2" /protein_id="EOY08072.1" /db_xref="TAIR:AT3G53030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTM4" /translation="MGDKKEEEEWSGSESGDYTSEDEGTEDYRRGGYHAVRIGDTFKN GRYVVQSKLGWGHFSTVWLAWDTQLSHYVALKVQKSAQHYTEAAMDEITILQQIADGD KEDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGDNLLTLIKYSDYRGLPIHMVKEICYH ILVGLDYLHRELSIIHTDLKPENILLLSMIDPSKDPRKSGTPVILPNSKDKTVLDSLK SMNGDLSRNQKKKIRRKAKRAAQGCVEKEVSAEADGDPETSGAAEPSPSEKTNAGSVE ERPTSSGNANRVSDADGTKDTGQVSQGNKRGSRSTRRKLLASVDLNCKLVDFGNACWT YKQFTNDIQTRQYRCPEVILGSKYSTSADLWSFACICFELSTGDVLFDPHSGDNFDRD EDHVALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLGPRLLEPSGSLS QNQAADSHTSEKKKNEMKEREAVEVGMGNIAISADSKPAKDPQSTLKSSKAASTSR" CDS complement(join(4272211..4272645,4272732..4272779, 4274603..4275571,4276040..4276249)) /locus_tag="TCM_022389" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29815.m000497; paralog of Thecc1EG041544t2" /codon_start=1 /product="Ser/arg-rich protein kinase 4 isoform 1" /protein_id="EOY08071.1" /db_xref="TAIR:AT3G53030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTM4" /translation="MGDKKEEEEWSGSESGDYTSEDEGTEDYRRGGYHAVRIGDTFKN GRYVVQSKLGWGHFSTVWLAWDTQLSHYVALKVQKSAQHYTEAAMDEITILQQIADGD KEDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGDNLLTLIKYSDYRGLPIHMVKEICYH ILVGLDYLHRELSIIHTDLKPENILLLSMIDPSKDPRKSGTPVILPNSKDKTVLDSLK SMNGDLSRNQKKKIRRKAKRAAQGCVEKEVSAEADGDPETSGAAEPSPSEKTNAGSVE ERPTSSGNANRVSDADGTKDTGQVSQGNKRGSRSTRRKLLASVDLNCKLVDFGNACWT YKQFTNDIQTRQYRCPEVILGSKYSTSADLWSFACICFELSTGDVLFDPHSGDNFDRD EDHVALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLGKVLVEKYEFSE QDANDMTDFLVPILDFVPEKRPSAAQCLLHPWINAGPRLLEPSGSLSQNQAADSHTSE KKKNEMKEREAVEVGMGNIAISADSKPAKDPQSTLKSSKAASTSR" CDS complement(join(4272211..4272416,4272558..4272645, 4272732..4272779,4274603..4275517)) /locus_tag="TCM_022389" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29815.m000497; paralog of Thecc1EG041544t2" /codon_start=1 /product="Ser/arg-rich protein kinase 4 isoform 3" /protein_id="EOY08073.1" /db_xref="TAIR:AT3G53030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTM4" /translation="MDEITILQQIADGDKEDKKCVVKLLDHFKHSGPNGQHVCMVFEY LGDNLLTLIKYSDYRGLPIHMVKEICYHILVGLDYLHRELSIIHTDLKPENILLLSMI DPSKDPRKSGTPVILPNSKDKTVLDSLKSMNGDLSRNQKKKIRRKAKRAAQGCVEKEV SAEADGDPETSGAAEPSPSEKTNAGSVEERPTSSGNANRVSDADGTKDTGQVSQGNKR GSRSTRRKLLASVDLNCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADL WSFACICFELSTGDVLFDPHSGDNFDRDEDHVALMMELLGMMPRKIALGGRYSRDFFN RYGDLRHIRRLRFWPLGPRLLEPSGSLSQNQAADSHTSEKKKNEMKEREAVEVGMGNI AISADSKPAKDPQSTLKSSKAASTSR" gene 4277906..4279957 /locus_tag="TCM_022390" /note="dbxref CacaoGD:Thecc1EG022390" mRNA join(4277906..4277992,4278749..4278824,4278913..4279014, 4279349..4279497,4279612..4279957) /locus_tag="TCM_022390" /product="Ribosomal protein L24" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033743001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043464t2" /inference="similar to AA sequence:frave:gene13307" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03992t00001" CDS join(4277982..4277992,4278749..4278824,4278913..4279014, 4279349..4279497,4279612..4279768) /locus_tag="TCM_022390" /note="dbxref frave:gene13307; paralog of Thecc1EG043464t2" /codon_start=1 /product="Ribosomal protein L24" /protein_id="EOY08074.1" /db_xref="TAIR:AT2G36620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q42347" /translation="MVLKTELCRFSGAKIYPGKGIRFVRSDSQVFLFSNSKCKRYFHN RLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPE VRDAAREAALREIKERIKKTKDEKKAKKAEVAAKQQKTGGKGNIPKGSAPKGPKLGGG GGKR" gene complement(4281679..4283303) /locus_tag="TCM_022391" /note="dbxref CacaoGD:Thecc1EG022391" mRNA complement(join(4281679..4282027,4282413..4282744, 4283035..4283303)) /locus_tag="TCM_022391" /product="Homeobox-leucine zipper protein ATHB-51" /inference="alignment:exonerate- protein:2:ricco:29815.m000499" /inference="similar to AA sequence:ricco:29815.m000499" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g11971t00001" CDS complement(join(4281788..4282027,4282413..4282744, 4283035..4283125)) /locus_tag="TCM_022391" /note="dbxref ricco:29815.m000499" /codon_start=1 /product="Homeobox-leucine zipper protein ATHB-51" /protein_id="EOY08075.1" /db_xref="TAIR:AT5G03790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZR0" /translation="MDWNGTLRTFVSRPEPSLNFLYNYNYDQYPGMEMKHPGLVEAVH GLVPALDKNSYNNQEKKKRLTTDQLDSLERSFQEEIKLDPDRKMKLSRELGLQPRQIA VWFQNRRARWKAKQLERLYDALKQEYDVISREKQKLQEEVMKLKGMLREQATKNPGST GYTDMSGEETVESTSIRCSNKPRVVANHHHQIAECNYVFNVDEYNPISSPYWAVQLPS YP" gene complement(4283661..4287136) /locus_tag="TCM_022392" /note="dbxref CacaoGD:Thecc1EG022392" mRNA complement(join(4283661..4284550,4285130..4285548, 4287022..4287136)) /locus_tag="TCM_022392" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.57 coverage" CDS complement(join(4284471..4284550,4285130..4285283)) /locus_tag="TCM_022392" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08076.1" /translation="MTPTITKDKEKKYYGNWALWVLNEQGPHLVFFCQQEQGQSFISC GKDGQIYGESARFSCYLNKQKGQNRRRLKHKST" gene 4286817..4288016 /locus_tag="TCM_022393" /note="dbxref CacaoGD:Thecc1EG022393" mRNA 4286817..4288016 /locus_tag="TCM_022393" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.78 coverage" CDS 4287263..4287478 /locus_tag="TCM_022393" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08077.1" /translation="MGTMSKMLYHTNCVLSSQNFFLVVQPCMNLFHLLTAVRRLLDQP LVKRTIGLRTEFKIGMQLTSLFILQQF" gene complement(4288323..4293891) /locus_tag="TCM_022394" /note="dbxref CacaoGD:Thecc1EG022394" mRNA complement(join(4288323..4289105,4292842..4292960, 4293532..4293891)) /locus_tag="TCM_022394" /product="Phloem protein 2-A15" /inference="alignment:exonerate- protein:2:ricco:29815.m000501" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015102t1" /inference="similar to AA sequence:ricco:29815.m000501" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04215t00001_C1" CDS complement(join(4288643..4289105,4292842..4292960, 4293532..4293843)) /locus_tag="TCM_022394" /note="dbxref ricco:29815.m000501; paralog of Thecc1EG015102t1" /codon_start=1 /product="Phloem protein 2-A15" /protein_id="EOY08078.1" /db_xref="TAIR:AT3G53000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LF92" /translation="MGSSLSNLTEGLNGTAMGPGLGDIPESCVACVFTYLTPPEICNL ARLNRAFRGAASSDSVWEKKLPSNYQDLLDLMPPERYQNLSKKDIFALLSRPIPFDDG NKEVWLDRVTGRVCMAISAKGMAITGIDDRRYWNWVSTEESRFHIVAYLQQIWWFEVD GVVKFPLPADIYTLSLRLHLGRFSKRLGRRVSSFEHTHGWDLRPVKFELSTADGQLAS CEHCLDDNEQDYEYGNLKRGCWIEYKVGQFIVSDSEPATEVRFSMKQIDCTHSKGGLC VDSVFIIPTDLRERKRRGVLK" mobile_element 4295801..4298645 /note="source:CACAO_M_E11025_F15_scaffold_2 1 2858" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 4305600..4308326 /locus_tag="TCM_022395" /note="dbxref CacaoGD:Thecc1EG022395" mRNA join(4305600..4306169,4306392..4308326) /locus_tag="TCM_022395" /product="Sequence-specific DNA binding transcription factors isoform 1" /inference="alignment:exonerate- protein:2:ricco:29815.m000502" /inference="similar to AA sequence:Phytozome:POPTR_0006s11870.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00004t00002" mRNA join(4305600..4305934,4306099..4306169,4306392..4308326) /locus_tag="TCM_022395" /product="Sequence-specific DNA binding transcription factors isoform 2" /inference="alignment:exonerate- protein:2:ricco:29815.m000502" /inference="similar to AA sequence:Phytozome:POPTR_0006s11870.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b021678t1a2; inference alignment:Newbler:10:TSA:cgbaP2_g00004t00002" CDS join(4305959..4306169,4306392..4307794) /locus_tag="TCM_022395" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Sequence-specific DNA binding transcription factors isoform 1" /protein_id="EOY08079.1" /db_xref="Phytozome:POPTR_0006s11870.1" /db_xref="TAIR:AT3G10040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTM7" /translation="MFSISLNLLRSNSLHLSFLSAHIVVFFCYIIENLKERALTAFFS GYRRRRRRSFQVPGDCYNSMVVSSLLGMLGLEMPLHPQQQQQQPQNPQSAQNPHQLHH HPQMVAYSLHETDHSQHQQSVKQGYPFASKTKQLSPLSDEDEPGFTPDDGAADAKRKI SPWQRMKWTDSMVRLLIMAVYYIGDEAGSEGNDPAGKKKAGGLLQKKGKWKSVSRAMM EKGFYVSPQQCEDKFNDLNKRYKRVNDILGRGTACKVVENQSLLDTMDLSPKMKEEVR KLLNSKHLFFREMCAYHNSCGHGATAGASGANHSPEVATETSQIQHQQAQQQRCLHSS DTAQIAGNSGGMDPEALKLTKVGSDEEDDDDDDDSDDDEDEDDEEAMDGHSRGHNGHG QEDDEDNDEKSTRKRPRKGALAMSLSPLMQQLSCEAVNVIQDGSKSVWEKHWMKMRLM QLEEQQVSYQYQAFELEKQRLKWVKFSGKKEREMEKAKLENERRRLENERMVLLVRQK ELELVDLQHQHQPQQHSSSKRGDPSSITG" CDS join(4306148..4306169,4306392..4307794) /locus_tag="TCM_022395" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Sequence-specific DNA binding transcription factors isoform 2" /protein_id="EOY08080.1" /db_xref="Phytozome:POPTR_0006s11870.1" /db_xref="TAIR:AT3G10040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTM7" /translation="MVVSSLLGMLGLEMPLHPQQQQQQPQNPQSAQNPHQLHHHPQMV AYSLHETDHSQHQQSVKQGYPFASKTKQLSPLSDEDEPGFTPDDGAADAKRKISPWQR MKWTDSMVRLLIMAVYYIGDEAGSEGNDPAGKKKAGGLLQKKGKWKSVSRAMMEKGFY VSPQQCEDKFNDLNKRYKRVNDILGRGTACKVVENQSLLDTMDLSPKMKEEVRKLLNS KHLFFREMCAYHNSCGHGATAGASGANHSPEVATETSQIQHQQAQQQRCLHSSDTAQI AGNSGGMDPEALKLTKVGSDEEDDDDDDDSDDDEDEDDEEAMDGHSRGHNGHGQEDDE DNDEKSTRKRPRKGALAMSLSPLMQQLSCEAVNVIQDGSKSVWEKHWMKMRLMQLEEQ QVSYQYQAFELEKQRLKWVKFSGKKEREMEKAKLENERRRLENERMVLLVRQKELELV DLQHQHQPQQHSSSKRGDPSSITG" gene complement(4308515..4314676) /locus_tag="TCM_022396" /note="dbxref CacaoGD:Thecc1EG022396" mRNA complement(join(4308515..4309304,4309395..4309454, 4310202..4310301,4310537..4310604,4310740..4310835, 4311536..4311624,4311886..4312030,4312342..4312431, 4312532..4312603,4312707..4312787,4312924..4313055, 4313228..4313305,4313657..4313812,4314161..4314258, 4314348..4314444,4314562..4314676)) /locus_tag="TCM_022396" /product="Pyruvate kinase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s11860.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043508t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s11860.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05309t00001" CDS complement(join(4309152..4309304,4309395..4309454, 4310202..4310301,4310537..4310604,4310740..4310835, 4311536..4311624,4311886..4312030,4312342..4312431, 4312532..4312603,4312707..4312787,4312924..4313055, 4313228..4313305,4313657..4313812,4314161..4314258, 4314348..4314444,4314562..4314630)) /locus_tag="TCM_022396" /note="paralog of Thecc1EG043508t1" /codon_start=1 /product="Pyruvate kinase family protein" /protein_id="EOY08081.1" /db_xref="Phytozome:POPTR_0006s11860.1" /db_xref="TAIR:AT3G52990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94KE3" /translation="MHSSHLLLEEPIRMASILEPSKASFFPAMTKIVGTLGPKSRSVD VISGCLKAGMSVARFDFSWRDAEYHQETLENLKAAVKSTKKLCAVMLDTVGPELQVVN KSEKAISLQADATVILTPDEGQEASSELLPINFDGLSEAVKKGDTIFIGQYLFTGSET TSVWLEVSEVKGNDVVCVIKNSATLAGSLFTLHASQIRIDLPTLSDKDKEVISTWGVQ NKIDFLSLSYTRHAKDVRHAREFLSKLGDLYQTQIFAKIENIEGLNHFDEILKEADGI ILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVA NAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFNQDLYFKKTVKYVGEPMT HLESIASSAVRAAIKVKASVIICFTSSGRAARLIAKYRPTMPVLSVVIPRLKTNQLKW SFSGAFEARQSLIVRGLFPMLADPRHPAESTSATNESVLKVALDHGKVSGVIKSHDRV VVCQKVGDASVVKIIELDD" gene 4318190..4322182 /locus_tag="TCM_022397" /note="dbxref CacaoGD:Thecc1EG022397" mRNA join(4318190..4318970,4319511..4319646,4319739..4319792, 4319894..4319985,4320793..4321028,4321189..4321359, 4321603..4322182) /locus_tag="TCM_022397" /product="Aspartate/glutamate/uridylate kinase family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033748001" /inference="similar to AA sequence:ricco:29815.m000504" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05020t00001" CDS join(4318312..4318970,4319511..4319646,4319739..4319792, 4319894..4319985,4320793..4321028,4321189..4321359, 4321603..4321700) /locus_tag="TCM_022397" /note="dbxref ricco:29815.m000504" /codon_start=1 /product="Aspartate/glutamate/uridylate kinase family protein" /protein_id="EOY08082.1" /db_xref="TAIR:AT3G10030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0JDG0" /translation="MASSVDDDFSLLDDHQTNHNHHHVLHHHHHPSYASIPAPPPDNH DAEDDSDSAFRGANFDNNNNNVTSSDVRIEKRRDQEEINDGVLKRPKQSTTEYRKDRE EWSDAAIGCLLEAYMEKLTQLNRGNLRGRDWEDVAAAVSERCEKQSKSVEQCKNKVDN LKKRYKLERHRMSDGGVTVSHWPWFKKMEEIVGNSLPVKAVPDEDKGGASPGTAVRQS KRYASATPSSAGQIISMKSKSPKWRRVVFKISGAALACTGPHNIDPKVAMLIAREVAI ACRLGVEVAIVVGGRNFFCGDTWVSATGLDRSTAYQIGMMASVMNSILLQSSLEKMGV QTRVQTAFSVQEVAEPYSRQRAIRHLEKGRVVIFGGIGAGTGNPLFSTDTAAALRASE IHAEAVLKGTNVDGVYDCHSQDNNATFEHISFRELVSRGATAMDMMALTFCEENGIPV VVFNLLQPGNISKALCGDQVGTLIDQTGRIS" gene complement(4322980..4326044) /locus_tag="TCM_022398" /note="dbxref CacaoGD:Thecc1EG022398" mRNA complement(join(4322980..4324225,4324326..4326044)) /locus_tag="TCM_022398" /product="Leucine-rich repeat protein kinase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s11840.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009589t1" /inference="similar to AA sequence:ricco:29815.m000505" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13519t1" CDS complement(join(4323546..4324225,4324326..4325745)) /locus_tag="TCM_022398" /note="dbxref ricco:29815.m000505; paralog of Thecc1EG009589t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein" /protein_id="EOY08083.1" /db_xref="TAIR:AT2G36570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SJQ1" /translation="MNYFPHQCSFFLLSTLLLYLLPLSFSSPSSPNDTSALTLFRLQA DTHGNLLSNWTGHDACSSTWRGVVCSSTGRVTALSLPSLSLRGPITSLFLLDQLRILD LQNNRLNGSVSTLTNCTNLKLVYLADNDFSGEIPPQISLLKRLLRLDLSNNNIGGNIP KEISGLNRLITLRLQNNALTGQIPDFSSSLKNLKELNLTYNEFYGRLPESLLKKFTEQ SFTGNEGLCGPSPLPVCSFTGSPPVDASAQTVPSNPSSMPQTPIIGQDKAKARKGLSP GAIVAIVVANCVVFLVVASFVVAYYCGRNRGESVSKAGSESEKRRSGSSYGSEKKAYA SGGADSDGTNATDRSKLVFFERRKQFELEDLLRASAEMLGKGSLGTVYKAVLDDGCTV AVKRLKDANPCPRKEFEQYMDVIGKVKHPNVVKLRAYYYAKEEKLLVYDYLPNGSLHS LLHGRLLVKETFSFHALRTDEPYGNRGPGRIPLDWTTRISLVLGAARGLAKIHEEYSA PKIPHGNVKSSNVLLDKNGVALISDFGLSLLLNPVHAIARLGGYRAPEQAEVKRLSQK ADVYSFGVLLLEVLTGRAPSQYPSPTRPRVEEEEQAVDLPKWVRSVVKEEWTAEVFDQ ELLRYKNIEEELVSMLHVGLACVVPQPEKRPTMAEVAKMIEDIRVEQSPLGEDYDESR NSLSPSLATTEDGLAGY" gene complement(4326074..4338562) /locus_tag="TCM_022399" /note="dbxref CacaoGD:Thecc1EG022399" mRNA complement(join(4326074..4326365,4329830..4329858, 4331052..4331166,4331260..4331332,4332078..4332295, 4333224..4333385,4334090..4334160,4334246..4334365, 4335210..4335300,4335907..4336004,4336558..4336674, 4337023..4337101,4337240..4337359,4337670..4337792, 4337942..4337984,4338135..4338562)) /locus_tag="TCM_022399" /product="3-deoxy-d-manno-octulosonic-acid transferase isoform 1" /inference="alignment:exonerate-protein:2:frave:gene30104" /inference="similar to AA sequence:Phytozome:POPTR_0016s11040.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2723t2" gene complement(4327602..4329072) /locus_tag="TCM_022400" /note="dbxref CacaoGD:Thecc1EG022400" mRNA complement(4327602..4329072) /locus_tag="TCM_022400" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.36 coverage" CDS complement(4328495..4328746) /locus_tag="TCM_022400" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08087.1" /translation="MTQVQSKNEEKDKNTEKERRQSHWCGTLTTANTFFAHELTLEAW CGWSEMKGNSDDNPAFNLSSLPFMHVSLYKARINSACNL" CDS complement(join(4331320..4331332,4332078..4332295, 4333224..4333385,4334090..4334160,4334246..4334365, 4335210..4335300,4335907..4336004,4336558..4336674, 4337023..4337101,4337240..4337359,4337670..4337792, 4337942..4337984,4338135..4338547)) /locus_tag="TCM_022399" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="3-deoxy-d-manno-octulosonic-acid transferase isoform 1" /protein_id="EOY08084.1" /db_xref="Phytozome:POPTR_0016s11040.1" /db_xref="TAIR:AT5G03770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZR2" /translation="MGPEKPFPAQSHRAKPKPSKPCFKKRKRSRLPKQAEGKMAMAGS RGELVYKIYRALTYGLSPLLHLHLHWRKFRGLEHPLRWPERLGRPSLPRPPGLLLWFH AVSLGEGMAAIPVIKCCSQLRPDVNILMTTTTFSAFEVLKNRIPANVIYQFAPIDTPS AMDAFLGYWKPNGIVIMESELWPNLIVGASKCGIGLALLNARLSAKSFRNWSRPVLFP LISLLLSKFSLIVPLSSVQAIHFQLLQAPPFSINFSGDLKYAVDECEPLVKDVGRIED LQKQLSQKRVWMAASIHRGEEEIMLGVHKGLTQTYPDLVTIIVPRHPQHGKEIAEELQ KGGKTVALRSQHEKLIPGTSIYVVDTLGELRQLYKLSPIAVIGGSFFPGLAGHNISEA AAAGCAVLTGHHVGHFSHMVIEMQQLNPLSVMQVSGKLDLEKALGKLFSDAKILESRQ KAAKEAFNALSSSVVTNAWNLLNFHFLRQLTKNWLVQVICFYDESPASIPNSNSQVTR GDIPGKFPLSGSSKFAPHKVHSFEFHNVTDITFGIICWRSHGMRWAD" mRNA complement(join(4331695..4332593,4333228..4333385, 4334090..4334365,4335210..4335300,4335907..4336004, 4336558..4336674,4337023..4337101,4337240..4337359, 4337670..4337792,4337942..4337984,4338135..4338562)) /locus_tag="TCM_022399" /product="3-deoxy-d-manno-octulosonic-acid transferase isoform 2" /inference="alignment:exonerate-protein:2:frave:gene30104" /inference="similar to AA sequence:frave:gene30104" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:PASA:2:TSA:puevd3b021682t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2723t2" CDS complement(join(4333363..4333385,4334090..4334365, 4335210..4335300,4335907..4336004,4336558..4336674, 4337023..4337101,4337240..4337359,4337670..4337792, 4337942..4337984,4338135..4338547)) /locus_tag="TCM_022399" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene30104" /codon_start=1 /product="3-deoxy-d-manno-octulosonic-acid transferase isoform 2" /protein_id="EOY08085.1" /db_xref="TAIR:AT5G03770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZR2" /translation="MGPEKPFPAQSHRAKPKPSKPCFKKRKRSRLPKQAEGKMAMAGS RGELVYKIYRALTYGLSPLLHLHLHWRKFRGLEHPLRWPERLGRPSLPRPPGLLLWFH AVSLGEGMAAIPVIKCCSQLRPDVNILMTTTTFSAFEVLKNRIPANVIYQFAPIDTPS AMDAFLGYWKPNGIVIMESELWPNLIVGASKCGIGLALLNARLSAKSFRNWSRPVLFP LISLLLSKFSLIVPLSSVQAIHFQLLQAPPFSINFSGDLKYAVDECEPLVKDVGRIED LQKQLSQKRVWMAASIHRGEEEIMLGVHKGLTQTYPDLVTIIVPRHPQHGKEIAEELQ KGGKTVALRSQHEKLIPGTSIYVVDTLGELRQLYKLSPIAVIGGSFFPGLAGHNISEA AAAGCAVLTGENLHLAPYVFHLPLNIPFSRVLFCDIFRSSCRPFLTYGDRNAAVKSFV CNAGVREIRS" mRNA complement(join(<4334096..4334160,4334318..4334365, 4335210..4335300,4335907..4336004,4336558..4336674, 4337023..4337101,4337240..4337359,4337670..4337792, 4337942..4337984,4338135..>4338538)) /locus_tag="TCM_022399" /product="3-deoxy-d-manno-octulosonic-acid transferase isoform 3" /inference="alignment:exonerate-protein:2:frave:gene30104" /inference="similar to AA sequence:frave:gene30104" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1378t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2723t2" CDS complement(join(<4334096..4334160,4334318..4334365, 4335210..4335300,4335907..4336004,4336558..4336674, 4337023..4337101,4337240..4337359,4337670..4337792, 4337942..4337984,4338135..>4338538)) /locus_tag="TCM_022399" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene30104" /codon_start=1 /product="3-deoxy-d-manno-octulosonic-acid transferase isoform 3" /protein_id="EOY08086.1" /db_xref="TAIR:AT5G03770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZR2" /translation="EKPFPAQSHRAKPKPSKPCFKKRKRSRLPKQAEGKMAMAGSRGE LVYKIYRALTYGLSPLLHLHLHWRKFRGLEHPLRWPERLGRPSLPRPPGLLLWFHAVS LGEGMAAIPVIKCCSQLRPDVNILMTTTTFSAFEVLKNRIPANVIYQFAPIDTPSAMD AFLGYWKPNGIVIMESELWPNLIVGASKCGIGLALLNARLSAKSFRNWSRPVLFPLIS LLLSKFSLIVPLSSVQAIHFQLLQAPPFSINFSGDLKYAVDECEPLVKDVGRIEDLQK QLSQKRVWMAASIHRGEEEIMLGVHKGLTQTYPDLVTIIVPRHPQHGKEIAEELQKGG KTVALRSQHEKLIPGTSIYVVDTLGELRQLYKLSPIAVIGGHHVGHFSHMVIEMQQLN PLSV" mobile_element 4339631..4339729 /note="source:scaffold_2_CACTA_0256 2647 2733" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4339646..4339722) /note="source:scaffold_9_CACTA_0929 9968 10043" /mobile_element_type="transposon:TIR/CACTA" gene 4344351..4356917 /locus_tag="TCM_022403" /note="dbxref CacaoGD:Thecc1EG022403" mRNA join(4344351..4345282,4345374..4345983,4354208..4355103, 4355440..4356917) /locus_tag="TCM_022403" /product="Cytochrome P450" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033752001" /inference="similar to AA sequence:Phytozome:GSVIVT01033752001" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete" CDS join(4344374..4345282,4345374..4345983,4354208..4355103, 4355440..4356051) /locus_tag="TCM_022403" /codon_start=1 /product="Cytochrome P450" /protein_id="EOY08088.1" /db_xref="Phytozome:GSVIVT01033752001" /db_xref="TAIR:AT3G52970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NBJ8" /translation="MEYEILGLSITLLLWVAWAMVTGRHRRLEELGQLPPGPRWWPVV GNIFQLGWAPHESFAKLARQHGPIMTLWLGSMSTVVISSNEVAREMFKNHDVVLAGRK IYEAMKGDFGHEGSLITSQYGSHWRMLRRLCTTEFFVTSRLDAMQGVRERCVDRMVQF VEGAGANGTNSVDVGRFFFLMAFNLIGNLIFSKDLLDTKSERGAKFFYHAGKVMELAG KPNVADFLPFLRCLDPQGIRRKTQFHVKRAFEIAGEFIKERMESMENGDYKGKRKDFL DVLLEFRGDGVEAPSKFSSRTVNVIVFEMFTAGTDTTTSTLEWAMAELLHNPKTMKVV QAELRSTLDPGKKLEEKDIEKLPYLKAVIKETLRLHPPLPFLVPHMAMNSCKMLGYHI PKETQVLVNVWAIGRDSTTWQEPLEFKPERFLEANTVDYKGHHFEFIPFGSGRRMCPA VPLASRLLPMALGSLLHSFDWTLADGLKPEDVDMTERMGISLRKSVPLKAVPIPHKRL LAFAAFFAGVAWASVRRHFQEPGQLPPGPRRWPVAGNIFQLSWREPPHLSITKLACQH GPITTLWLGSMCTVVISSGEVAREMFKNHDVVLAGRKIYESMKGNYGNEGSIITSQYG SHWRMLRRLCTMEFFVSSRLDAMKGVRSKCVDQMVEFIQNASAFGTNAIDIGRFFLLL TFNLIGNLLFSYDLLDPKSERGANLLYHTGKVIEFAGTPNVADFFPILKRFDPQGIRR KAQFHIEHAFRIVREFIEERTETTENGYNGGKTRKDYLDVLLEFDGDDIGKPSRFSST TINVIVLEMFTAGTDTTAGTLEWAMAELLHNPPILKKLQAELRSTIGSGRKLEEKDIE NLPYLNSVIKETLRLHPPLPFLVPHMAMNSCKMLGYKIPKETQILVNVWAIGQDPNTW DDPLEFKPERFLELNNMDYKGQHFEFIPFGSGRRMCPAVSLASRVLPLALGTLLHSFD WILAGGLKPEDMDMTGRMAMTLRKSVPLNVIALPYK" mobile_element 4351049..4351628 /note="source:CACAO_on_S_E46_scaffold_2 2274 2822" /mobile_element_type="transposon:TIR/Mutator" mobile_element 4352534..4352578 /note="source:CACAO_on_S_E46_scaffold_2 3300 3344" /mobile_element_type="transposon:TIR/Mutator" mobile_element 4362565..4363362 /note="source:CACAO_M_E48538_F49_scaffold_6 1798 2596" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4363425..4365691) /note="source:INTACT336_F12_scaffold_2-int 13334 15103" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4365430..4366330 /note="source:INTACT1820F_F94_scaffold_12-int 1728 2632" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4366308..4366647 /note="source:INTACT1820F_F94_scaffold_12-int 2872 3225" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4372971..4373344 /note="source:CACAO_M_E48538_F49_scaffold_6 2863 3240" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4373523..4376504) /note="source:CACAO_M_E12756_F7_scaffold_3 1 2977" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4379120..4379680) /note="source:INTACT72F_F343_scaffold_2-int 12253 12664" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4382412..4382478) /note="source:INTACT89_F140_scaffold_9-int 15330 15402" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4382434..4383927 /note="source:INTACT59_F126_scaffold_9-int 389 2747" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4383928..4387114 /note="source:CACAO_M_E71405_F316_scaffold_10 4800 7991" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4387094..4398724 /note="source:INTACT59_F126_scaffold_9-int 2727 14260" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4398178..4399637) /note="source:INTACT726_F314_scaffold_5-int 2168 3426" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4399917..4401734) /note="source:INTACT72F_F343_scaffold_2-int 9105 11930" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 4402477..4403989 /locus_tag="TCM_022407" /note="dbxref CacaoGD:Thecc1EG022407" mRNA join(4402477..4402581,4403172..4403989) /locus_tag="TCM_022407" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001997t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(4402574..4402581,4403172..4403487) /locus_tag="TCM_022407" /note="paralog of Thecc1EG001997t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08089.1" /translation="MDRSLGSSAACCKCGARVEDMSHAFRDCRPTKLFLLQCSTSIIE EAFFYMSSKDWVLDNIFNTLNNISNAVTYENLPWNLFFIHALWFLWYWRNLRKFDHNF RWPSN" mobile_element complement(4404444..4405387) /note="source:CACAO_Mutator_E39_scaffold_1 3298 4092" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(4405377..4413160) /note="source:CACAO_on_S_E176_scaffold_5 79 7881" /mobile_element_type="transposon:TIR/Mutator" mobile_element 4411620..4413341 /note="source:scaffold_10_CACTA_0141 435 2174" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4414444..4414776) /note="source:INTACT1608F_F65_scaffold_10-int 3407 3759" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4414842..4415123 /note="source:scaffold_2_CACTA_0248 8858 9146" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4415223..4415396) /note="source:INTACT726_F314_scaffold_5-int 13026 13192" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4415600..4417890) /note="source:INTACT726_F314_scaffold_5-int 10642 12884" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4417637..4420024 /note="source:scaffold_2_CACTA_0248 489 2881" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4420305..4424205 /note="source:scaffold_2_CACTA_0248 3251 7207" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4424212..4424773 /note="source:scaffold_2_CACTA_0248 7335 7880" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4424768..4425037) /note="source:INTACT1608F_F65_scaffold_10-int 2867 3080" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4425203..4425563 /note="source:scaffold_2_CACTA_0248 8802 9169" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4425621..4425815) /note="source:INTACT1608F_F65_scaffold_10-int 2205 2382" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4427853..4428463) /note="source:INTACT532_F84_scaffold_2-int 4021 4632" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4429334..4429420 /note="source:CACAO_M_E43482_F345_scaffold_5 1153 1230" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4429363..4429436) /note="source:CACAO_M_E12463_F12_scaffold_3 4540 4611" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 4433038..4448267 /locus_tag="TCM_022410" /note="dbxref CacaoGD:Thecc1EG022410" mRNA join(4433038..4433214,4442432..4442982,4447915..4448267) /locus_tag="TCM_022410" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete" CDS join(4433161..4433214,4442432..4442982,4447915..4448236) /locus_tag="TCM_022410" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08090.1" /translation="MEEYPVTSNSHVIKTVNRFIPPFYFCSINGFLLSLFHRRSPFFP SSSLVGHTLDFSFLFLSPFHLFYFYFLSFFFSSFADPIIIIISSLSFSFTPCGWPLPI QHKNISVASYLTTWATAHVGLSLFFFFTITYINFYIHLLLLLFILFTQNNKIYIQILN FFVFATQSSSFRILKFVLPTHVKILISFYLLLHVYNQNIETCHKPQLGYIAFCSLSFN VSSLRKISRTMSSGCSQSEYKPITYSLMPKAVNTISSLEFYSYLPIVTPSAHLLTHCL IAHQPLMTIQIRPLINSQTSAFSHFSIHFENT" mobile_element complement(4436023..4438518) /note="source:INTACT127_F12_scaffold_6-int 8677 11179" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4442745..4443316 /note="source:CACAO_M_E48452_F5_scaffold_6 9944 10544" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4446131..4447424 /note="source:CACAO_M_S_E14932_F233_scaffold_2 3245 4042" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4450073..4451542) /note="source:INTACT37_F117_scaffold_2-int 1860 3282" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4451063..4452608 /note="source:INTACT745_F320_scaffold_4-int 6505 8073" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4453338..4453893 /note="source:CACAO_M_E48452_F5_scaffold_6 14273 14825" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 4456242..4464258 /locus_tag="TCM_022413" /note="dbxref CacaoGD:Thecc1EG022413" mRNA join(4456242..4456347,4458248..4458500,4461429..4462357, 4463082..4464258) /locus_tag="TCM_022413" /product="Cytochrome P450 76A2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s09580.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022403t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033752001" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2681t1" mobile_element complement(4457529..4457755) /note="source:INTACT566_F257_scaffold_7-int 529 753" /mobile_element_type="retrotransposon:LTR/Copia" CDS join(4458251..4458500,4461429..4462357,4463082..4463699) /locus_tag="TCM_022413" /note="paralog of Thecc1EG022403t1" /codon_start=1 /product="Cytochrome P450 76A2" /protein_id="EOY08091.1" /db_xref="Phytozome:GSVIVT01033752001" /db_xref="TAIR:AT3G52970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P37122" /translation="MFTAGTDTTSGTLEWAMAELLHNPRTLEKVQAELRSINPSKKIE ENDIENLPYLQAVIKGTLRLHPPLPFLVPHNAKNSCKMLELACEVMDWPTSFLVCLVI FSSSVLFLFFRRRNSNPGKLPPGPPGWPIIGNMFDLGTMPHRTLTCLRDKYGPVIWLR LGTVNTMVLLSTKAATELFKNHDLSFAERNITEIMRAHDYHKSSLALAPYGSYWRVLR RLVTVDMLVNKRINETTCIRRKCVDDMLLWIEDEARKKQGDSHRDGIHVARFVFLLTF NLLGNLMLSRDLFDPDSKEGSELFMVMLRLMEWSGQGNIADFFPWLRWLDPQGLKRKM EKDLGKAIEIASKFVKEKLQQKKVGEDKRDFLDLLIEFEGNGKDEPAKLSDHELNIFI LEIFLAGSETTSSTIEWAFAELLCNPDAMIKAKAELTRVVGPNKKVEERDIENLHYLH AVVKETFRLHPPLPFLIPRKAMQDTNFMGYHIPKNTQVFVNAWAIGRDPEVWDDPLLF KPERFIGSKIEYKGHHYELIPFGAGRRMCAGVALADRVLRLVLGSLLHHFDWELGGNV TKETIDMKDNLGVTMRKLEPLLAVPKKCKTSD" gene 4464515..4466778 /locus_tag="TCM_022414" /note="dbxref CacaoGD:Thecc1EG022414" mRNA join(4464515..4464803,4465519..4466168,4466250..4466778) /locus_tag="TCM_022414" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007413t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS join(4465699..4466168,4466250..4466313) /locus_tag="TCM_022414" /note="paralog of Thecc1EG007413t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08092.1" /translation="MIFDGKIWDPTNMLDITKLRLAWWVKSKWLDHNTSITNFIRAPS STLARTSRKQTKSKVSWECPPIGWLKFNIDGAVRSCPGHLGIGGVLQDETGAIKLIFS KKASWGDANLAEVLAVRKAMVLFATSSWVNSNNIIIESDSKNVVSWVFNPSKALWSSN ETADSLAKSGVNKTHDL" gene 4467030..4468942 /locus_tag="TCM_022415" /note="dbxref CacaoGD:Thecc1EG022415" mRNA join(4467030..4467050,4467182..4467369,4467475..4467660, 4467727..4467870,4468657..4468942) /locus_tag="TCM_022415" /product="Cytochrome P450, family 76, subfamily G, polypeptide 1" /inference="alignment:exonerate- protein:2:ricco:29815.m000520" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS join(4467289..4467369,4467475..4467660,4467727..4467870, 4468657..4468767) /locus_tag="TCM_022415" /codon_start=1 /product="Cytochrome P450, family 76, subfamily G, polypeptide 1" /protein_id="EOY08093.1" /db_xref="TAIR:AT3G52970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HKG4" /translation="MPHQTLYKLKPKYGPVLRLKLGSINTLGTLALGRYGSYWHMDRC ICSTKLLVNKRINEMAPLRQKCLDDMMRYIEEDIVAAHAQGQIGKDLLDSGSKKGKEL FDAMNKVMEWAGKPILADFFLILKWLNPQGIKKNMELGSNITSEAIDMNEMVGIIARK LIPFEAIPKKHVM" mobile_element complement(4470385..4472020) /note="source:INTACT319_F3_scaffold_1-int 1 1635" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4472761..4473833 /note="source:CACAO_M_E34421_F12_scaffold_5 1 1073" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(4485237..>4488279) /locus_tag="TCM_022418" /note="dbxref CacaoGD:Thecc1EG022418" mRNA complement(join(4485237..4487529,4488043..4488049)) /locus_tag="TCM_022418" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene30114" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043560t3" /inference="similar to AA sequence:ricco:29815.m000521" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00670t00002" mRNA complement(join(4485575..4487300,4487381..4487529, 4488043..4488100)) /locus_tag="TCM_022418" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene30114" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043560t3" /inference="similar to AA sequence:Phytozome:GSVIVT01033764001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00670t00003; inference alignment:Newbler:10:TSA:cgbaB_g00670t00002" CDS complement(4485743..4487464) /locus_tag="TCM_022418" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29815.m000521; paralog of Thecc1EG043560t3" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY08094.1" /db_xref="TAIR:AT5G04550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BEF8" /translation="MGREMVIESWFGSSWWNPRKSASESTDKVVLGILAFEVTRLMSK VVNLWHALDGREILKLREEIADSIGIQRLVSDDENYLMDLALNEVIENFGNLAKSVAR LGKKCTDPVYRRFEHFINDPILNNFEWFGWEYRWKKMERKVKKMERFVAVTMQLTQEL EVLAELEQTLRRMQRNAESDRVKLLESQQKVMWQRQEVKNLREMSPWIRTYDYIVRLL LRSLLTILERIKIVFGTNQMATVDGNNDFESMNTDCLSRSHSFSTLIPSSVYPSDNNI CGFSSGPLGRSFSKSVQITHKYRTNSKHLQCHHQSTALHGKHQHLKIKRSSHVGVGPF KGCLSAGSDSPILESCKPIGTGSMRFSRPYTKTIDNINNSKMESSSCSNKIYSKLSIF NTKCLLNAPPSTLGDAALALRYANVIILIEKLVSSPHLIGHDARDDLYNMLPTTMRNA LRVKLKSYAKTLASFIYDASLAAEWSLALVRILEWLAPLAHNMIRWQSERNFEEQHVV SRSNVLLVQTLYFANQAKTEAAITELLVGLNYVYRIERAHNEKAVHDSAGSGGCTQYL IKRDDIR" CDS complement(4485743..4487221) /locus_tag="TCM_022418" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG043560t3" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY08095.1" /db_xref="Phytozome:GSVIVT01033764001" /db_xref="TAIR:AT5G04550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BEF8" /translation="MDLALNEVIENFGNLAKSVARLGKKCTDPVYRRFEHFINDPILN NFEWFGWEYRWKKMERKVKKMERFVAVTMQLTQELEVLAELEQTLRRMQRNAESDRVK LLESQQKVMWQRQEVKNLREMSPWIRTYDYIVRLLLRSLLTILERIKIVFGTNQMATV DGNNDFESMNTDCLSRSHSFSTLIPSSVYPSDNNICGFSSGPLGRSFSKSVQITHKYR TNSKHLQCHHQSTALHGKHQHLKIKRSSHVGVGPFKGCLSAGSDSPILESCKPIGTGS MRFSRPYTKTIDNINNSKMESSSCSNKIYSKLSIFNTKCLLNAPPSTLGDAALALRYA NVIILIEKLVSSPHLIGHDARDDLYNMLPTTMRNALRVKLKSYAKTLASFIYDASLAA EWSLALVRILEWLAPLAHNMIRWQSERNFEEQHVVSRSNVLLVQTLYFANQAKTEAAI TELLVGLNYVYRIERAHNEKAVHDSAGSGGCTQYLIKRDDIR" mRNA complement(join(<4486267..4487475,4488043..>4488279)) /locus_tag="TCM_022418" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate-protein:2:frave:gene30114" /inference="similar to AA sequence:ricco:29815.m000521" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is medium, protein is partial; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1135t1; inference alignment:Newbler:10:TSA:cgbaB_g00670t00002; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1185t2_C2" CDS complement(join(<4486268..4487475,4488043..>4488277)) /locus_tag="TCM_022418" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29815.m000521" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY08096.1" /db_xref="TAIR:AT5G04550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BEF8" /translation="WVSVFNLGLTDFRFFCLLLSLPYLLHPYKPLLLLLPSVRVWSRL LTTGNQTKSSFILFLLVFSSSVASWGCSVLLFYPLYRIMGREMVIESWFGSSWWNPRK SASESTDKVVLGILAFEVTRLMSKVVNLWHALDGREILKLREEIADSIGIQRLVSDDE NYLMDLALNEVIENFGNLAKSVARLGKKCTDPVYRRFEHFINDPILNNFEWFGWEYRW KKMERKVKKMERFVAVTMQLTQELEVLAELEQTLRRMQRNAESDRVKLLESQQKVMWQ RQEVKNLREMSPWIRTYDYIVRLLLRSLLTILERIKIVFGTNQMATVDGNNDFESMNT DCLSRSHSFSTLIPSSVYPSDNNICGFSSGPLGRSFSKSVQITHKYRTNSKHLQCHHQ STALHGKHQHLKIKRSSHVGVGPFKGCLSAGSDSPILESCKPIGTGSMRFSRPYTKTI DNINNSKMESSSCSNKIYSKLSIFNTKCLLN" gene 4497498..4501782 /locus_tag="TCM_022420" /note="dbxref CacaoGD:Thecc1EG022420" mRNA join(4497498..4497727,4497835..4498635,4499332..4499399, 4499530..4499661,4500649..4500810,4501043..4501385, 4501471..4501782) /locus_tag="TCM_022420" /product="DNA binding protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g07550.1" /inference="similar to AA sequence:ricco:29092.m000442" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13526t1" mRNA join(4497765..4498650,4499359..4499399,4499530..4499661, 4500649..>4500782) /locus_tag="TCM_022420" /product="DNA binding protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g07550.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015732t1" /inference="similar to AA sequence:ricco:29092.m000442" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is weak, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc46t8; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13526t1" CDS join(4498167..4498635,4499332..4499399,4499530..4499661, 4500649..4500810,4501043..4501375) /locus_tag="TCM_022420" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29092.m000442" /codon_start=1 /product="DNA binding protein, putative isoform 1" /protein_id="EOY08097.1" /db_xref="TAIR:AT4G12080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SRF6" /translation="MEEKESTISGSLGNSDTDSPPAPVSSLVLPQVMNMDMNMSINMT LERSLDSAATATATVGGVGAGATITAATAIPGSGGGTLGSPGSGGLDSLAKKRRGRPR KYDADGNLRLPYPVVTTSPPGFTLSPCSPSEFSSSKRGRGRPPGSGNWQLLASLGELF ANTAGGDFTPHVVTVNTGEDVAGKILSFSQKGPRGICILSANGAVSNVTIRQPGSSGG ILTYEGRFEILSLTGSFTVSDTGGVKCRTGGLSVSLAGPDGRVIGGGLAGILVAASPI QIVVGSFMPNGYKVHKRKHYREHAVASTVAAAPSAAVTAARPISQAKPEGDNCMTPTS PFPGESLGEGDNSTIDKHVPNATSSHAAAGWNGSEPTSIHRPSPDINVSVPSE" CDS join(4498167..4498650,4499359..4499399,4499530..4499661, 4500649..>4500780) /locus_tag="TCM_022420" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29092.m000442; paralog of Thecc1EG015732t1" /codon_start=1 /product="DNA binding protein, putative isoform 2" /protein_id="EOY08098.1" /db_xref="TAIR:AT4G12080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SRF6" /translation="MEEKESTISGSLGNSDTDSPPAPVSSLVLPQVMNMDMNMSINMT LERSLDSAATATATVGGVGAGATITAATAIPGSGGGTLGSPGSGGLDSLAKKRRGRPR KYDADGNLRLPYPVVTTSPPGFTLSPCSPSEFSSSKRGRGRPPGSGNWQLLASLGKVQ ERDFTPHVVTVNTGEDVAGKILSFSQKGPRGICILSANGAVSNVTIRQPGSSGGILTY EGRFEILSLTGSFTVSDTGGVKCRTGGLSVSLAGPDGRVIGGGLA" gene complement(4503263..4506914) /locus_tag="TCM_022421" /note="dbxref CacaoGD:Thecc1EG022421" mRNA complement(join(4503263..4503939,4504033..4504093, 4504177..4504362,4504449..4504515,4504617..4504698, 4504825..4505041,4505459..4505484,4505678..4505787, 4506883..4506914)) /locus_tag="TCM_022421" /product="Haloacid dehalogenase-like hydrolase superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29092.m000443" /inference="similar to AA sequence:Phytozome:POPTR_0010s25040.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01350t00001" mRNA complement(join(4503263..4503933,4504033..4504093, 4504177..4504362,4504449..4504515,4504617..4504698, 4504825..4505041,4505459..4505604)) /locus_tag="TCM_022421" /product="Haloacid dehalogenase-like hydrolase superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:29092.m000443" /inference="similar to AA sequence:Phytozome:POPTR_0010s25040.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:PASA:2:TSA:puevd3b021703t1a2; inference alignment:Newbler:10:TSA:cgbaB_g01350t00001" CDS complement(join(4503776..4503939,4504033..4504093, 4504177..4504362,4504449..4504515,4504617..4504698, 4504825..4505041,4505459..4505484,4505678..4505768)) /locus_tag="TCM_022421" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Haloacid dehalogenase-like hydrolase superfamily protein, putative isoform 1" /protein_id="EOY08099.1" /db_xref="Phytozome:POPTR_0010s25040.2" /db_xref="TAIR:AT4G26190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HKG9" /translation="MVLIFECMNDQSNLSNSFSLLVIYTERSFEFGRGLRKEKKMAGT SNFTKREFFYGSVEDDRDQNYSVHTKGRKKLLVFGLGGLLCHRICRKDTAEVPIVHRR PDAVYGSYAVYKRPYCEEFMKFCLSRFEVGIWSSAREWYLNSALDCIMSGLRSKILFA WDQNECTNTGVSCLEKKEKPIFLKELKKVWDRNWSSSLQHRDEYSASNTLLIDDKPYK ALLNPPYTAIFPSEYKANQVNDNSLGPDGELWRYLEGLAAADDVPSYVKAHPFGQPAI TPMHSDWDYYSKIMVNIQGTR" CDS complement(join(4503776..4503933,4504033..4504093, 4504177..4504362,4504449..4504515,4504617..4504698, 4504825..4505038)) /locus_tag="TCM_022421" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Haloacid dehalogenase-like hydrolase superfamily protein, putative isoform 2" /protein_id="EOY08100.1" /db_xref="Phytozome:POPTR_0010s25040.2" /db_xref="TAIR:AT2G36540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HKG9" /translation="MAGTSNFTKREFFYGSVEDDRDQNYSVHTKGRKKLLVFGLGGLL CHRICRKDTAEVPIVHRRPDAVYGSYAVYKRPYCEEFMKFCLSRFEVGIWSSAREWYL NSALDCIMSGLRSKILFAWDQNECTNTGVSCLEKKEKPIFLKELKKVWDRNWSSSLQH RDEYSASNTLLIDDKPYKALLNPPYTAIFPSEYKANQVNDNSLDGELWRYLEGLAAAD DVPSYVKAHPFGQPAITPMHSDWDYYSKIMVNIQGTR" gene 4505699..4510413 /locus_tag="TCM_022422" /note="dbxref CacaoGD:Thecc1EG022422" mRNA join(4505699..4505816,4507178..4507832,4509374..4510413) /locus_tag="TCM_022422" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s01580.1" /inference="similar to AA sequence:frave:gene30125" /note="quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc712t2_C1" CDS join(4505746..4505816,4507178..4507832,4509374..4509415) /locus_tag="TCM_022422" /note="dbxref frave:gene30125" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08101.1" /db_xref="TAIR:AT3G10020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I7C5" /translation="MHSKIKTMRHRKHDLNSNKPICLRLRHTRTFDYTWQKLSINVAC RTFQHRLLFQSISFQHFLVSKLKQYAFSSMYYPVLYIKSSSSSGTNIEDKASKVEMKP INDKKEDKKTPVVIQAVSHDEERKKKVEKTEVPSRNIDTIKYVEKKLEDKGVQRMERH PANGIGIGRPPPKSGHGGKYTWEGLMTWQRTSCWRCLQLSMRRTQTISMRRKNRGLRG EKSDVAGFVMGEVEVAKAFEDREGVARVELDPHLKVN" mobile_element 4507837..4508205 /note="source:INTACT1330F_F382_scaffold_8-int 1 378" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4508309..4508667 /note="source:scaffold_5_CACTA_0584 8535 8892" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4508768..4509374 /note="source:CACAO_on_E459_scaffold_2 1951 2551" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 4515363..4515415 /note="source:scaffold_5_CACTA_0584 1925 1976" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4519386..4520270) /note="source:CACAO_M_E49282_F119_scaffold_6 1 927" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 4522015..4526629 /locus_tag="TCM_022423" /note="dbxref CacaoGD:Thecc1EG022423" mRNA join(4522015..4522818,4522905..4523003,4523125..4523377, 4524508..4524618,4524794..4524930,4525133..4525246, 4525343..4525542,4525971..4526165,4526317..4526629) /locus_tag="TCM_022423" /product="Nucleotide-diphospho-sugar transferases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033767001.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043600t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033767001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2701t1" mRNA join(4522065..4522818,4522905..4523003,4523125..4523377, 4524508..4524618,4524794..4524930,4525133..4525246, 4525343..4525542,4525971..4526153,4526317..>4526344) /locus_tag="TCM_022423" /product="Nucleotide-diphospho-sugar transferases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033767001.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043600t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033767001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc746t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2701t1" mRNA join(4522065..4522818,4522905..4523003,4523125..4523377, 4524508..4524618,4524794..4524930,4525133..4525246, 4525343..4525459,4525971..4526153,4526317..4526344) /locus_tag="TCM_022423" /product="Nucleotide-diphospho-sugar transferases superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033767001.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043600t1" /inference="similar to AA sequence:Phytozome:Glyma03g34800.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc746t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2701t1" CDS join(4522489..4522818,4522905..4523003,4523125..4523377, 4524508..4524618,4524794..4524930,4525133..4525246, 4525343..4525542,4525971..4526165,4526317..4526479) /locus_tag="TCM_022423" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG043600t1" /codon_start=1 /product="Nucleotide-diphospho-sugar transferases superfamily protein isoform 1" /protein_id="EOY08102.1" /db_xref="Phytozome:GSVIVT01033767001" /db_xref="TAIR:AT5G03760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZR3" /translation="MDRLSSTTILPDTFQGTRDDFSMQMAVIWGQIKAPLIVPLLRLT VIVCLIMSLMLFIERVYMGIVIMLVKLFGRKPERRYKWEPIKDDVELGNSAYPMVLVQ IPMYNEREVYQLSIGAACGLSWPSDRIIIQVLDDSTDPTIKDLVELECQRWASKGINI KYEIRDNRNGYKAGALKEGMKRSYVKHCDYVVIFDADFQPEPDFLWRTIPFLVHNPEL ALVQARWKFVNADECLMTRMQEMSLDYHFTVEQEVGSSTYAFFGFNGTAGVWRIAALN EAGGWKDRTTVEDMDLAVRASLKGWKFLYLGSLKVKNELPSTLKAYRYQQHRWSCGPA NLFRKMVMEIITNKKVSSWKKVHVIYSFFVVRKLVAHIVTFIFYCVVLPATVLVPEVE VPKWGAVYIPTIITILNAVGTPRSLHLLVFWILFENVMSLHRTKATFIGLLEAGRVNE WIVTEKLGDALKAKAGTKAPRKPRFRFGERLHLLELCVGAYLFFCGCYDVVFGKNHYF IYLFAQAIAFFIMGFGYVGTIVPNS" CDS join(4522489..4522818,4522905..4523003,4523125..4523377, 4524508..4524618,4524794..4524930,4525133..4525246, 4525343..4525542,4525971..4526153,4526317..>4526344) /locus_tag="TCM_022423" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG043600t1" /codon_start=1 /product="Nucleotide-diphospho-sugar transferases superfamily protein isoform 2" /protein_id="EOY08103.1" /db_xref="Phytozome:GSVIVT01033767001" /db_xref="TAIR:AT5G03760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZR3" /translation="MDRLSSTTILPDTFQGTRDDFSMQMAVIWGQIKAPLIVPLLRLT VIVCLIMSLMLFIERVYMGIVIMLVKLFGRKPERRYKWEPIKDDVELGNSAYPMVLVQ IPMYNEREVYQLSIGAACGLSWPSDRIIIQVLDDSTDPTIKDLVELECQRWASKGINI KYEIRDNRNGYKAGALKEGMKRSYVKHCDYVVIFDADFQPEPDFLWRTIPFLVHNPEL ALVQARWKFVNADECLMTRMQEMSLDYHFTVEQEVGSSTYAFFGFNGTAGVWRIAALN EAGGWKDRTTVEDMDLAVRASLKGWKFLYLGSLKVKNELPSTLKAYRYQQHRWSCGPA NLFRKMVMEIITNKKVSSWKKVHVIYSFFVVRKLVAHIVTFIFYCVVLPATVLVPEVE VPKWGAVYIPTIITILNAVGTPRSLHLLVFWILFENVMSLHRTKATFIGLLEAGRVNE WIVTEKLGDALKAKAGTKAPRKPRFRLHLLELCVG" CDS join(4522489..4522818,4522905..4523003,4523125..4523377, 4524508..4524618,4524794..4524930,4525133..4525246, 4525343..4525459,4525971..4526006) /locus_tag="TCM_022423" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG043600t1" /codon_start=1 /product="Nucleotide-diphospho-sugar transferases superfamily protein isoform 3" /protein_id="EOY08104.1" /db_xref="Phytozome:Glyma03g34800.1" /db_xref="TAIR:AT5G03760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZR3" /translation="MDRLSSTTILPDTFQGTRDDFSMQMAVIWGQIKAPLIVPLLRLT VIVCLIMSLMLFIERVYMGIVIMLVKLFGRKPERRYKWEPIKDDVELGNSAYPMVLVQ IPMYNEREVYQLSIGAACGLSWPSDRIIIQVLDDSTDPTIKDLVELECQRWASKGINI KYEIRDNRNGYKAGALKEGMKRSYVKHCDYVVIFDADFQPEPDFLWRTIPFLVHNPEL ALVQARWKFVNADECLMTRMQEMSLDYHFTVEQEVGSSTYAFFGFNGTAGVWRIAALN EAGGWKDRTTVEDMDLAVRASLKGWKFLYLGSLKVKNELPSTLKAYRYQQHRWSCGPA NLFRKMVMEIITNKKVSSWKKVHVIYSFFVVRKLVAHIVTFIFYCVVLPATVLIASLI GLLDPL" gene 4528008..4532352 /locus_tag="TCM_022424" /note="dbxref CacaoGD:Thecc1EG022424" mRNA join(4528008..4531312,4532213..4532352) /locus_tag="TCM_022424" /product="Pentatricopeptide (PPR) repeat-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s25620.1" /inference="similar to AA sequence:frave:gene30131" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.37 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00364t00002" mRNA join(4528526..4531077,4531170..4531515) /locus_tag="TCM_022424" /product="Pentatricopeptide (PPR) repeat-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s25620.1" /inference="similar to AA sequence:frave:gene30131" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00364t00002; alternateUTRof:Thecc1EG022424t1; inference alignment:Newbler:10:TSA:cgbaB_g00364t00002; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1240t3_C2" CDS 4528552..4531011 /locus_tag="TCM_022424" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene30131" /codon_start=1 /product="Pentatricopeptide (PPR) repeat-containing protein, putative isoform 1" /protein_id="EOY08105.1" /db_xref="TAIR:AT5G12100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HVD7" /translation="MAAKRVTLLSKFSCNSQKKLRTPLSLCTLSSPDKTQTNEAPTAN TNNENESFMHNHECHQHIQNLSAFLQQGQTQAAQNLTKSLLFSKSPFASPSDLFTLFS LTSPSLKLIFSNILFSLLAESKMHSEALELYKAMRKEGMQPSITSLNLLLESLVSLNK FDKTINLFEEIIESGFRPNKFMYGKAVQAAVKLGDLKRANEYVHSMKKKGVSPSLFIY NALIGGVCKEKRIRDAEKLFHEMLERKLVASVVTYNTLIDGYCKVGELEKAFDLKERM VRENVEPNLVTFNILVGGLCRAHRMEDAKQVLKEMEAQGFAPDGFTCSIIFDGFLRSG NVKSALALYEEVSGKGVGINRYMLSNWLNYLCKEGKVEKAEEFLQKEIEKGFVPNEVV YNAIVNGYCRISNMNKAISMVEHMEKLGLRPDCVTFNSLIDKFCEMKEVEYAEEWVKM MREKGVLPNVETYNILINGYGQLCLLDRCFAIIEEMENRGIKPNVVSYGSIINYLCKD GKLLEAEITFRDMVSRGVLPNVLIYNMLIAGNCTAGKLKDAFRYFDEMVKGETRPTIV TYNTLINGLCKKGRVTETEDLLSQITSSGCTPDVITYNTLISGYSNEGNAHKCLELYE NMKNLGIKPTLNTYCPLISVCCKEGIELVQRLVCEMSEMHLTPDRLIYNILIHLYAEH GDVQAFALHHEMVERGICSDKMTYNSLILGHFRRGNLSEIKNLVSDMKVKGLVPKADT YDLLIRGYCEQKDFIGAYLWYREMLENHFLPRFTTCNKLLTGLTEQGRLQEAQIICSE MKVKGMDDWSFGEDLSAVVKM" CDS 4528552..4531011 /locus_tag="TCM_022424" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene30131" /codon_start=1 /product="Pentatricopeptide (PPR) repeat-containing protein, putative isoform 1" /protein_id="EOY08107.1" /db_xref="TAIR:AT5G12100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HVD7" /translation="MAAKRVTLLSKFSCNSQKKLRTPLSLCTLSSPDKTQTNEAPTAN TNNENESFMHNHECHQHIQNLSAFLQQGQTQAAQNLTKSLLFSKSPFASPSDLFTLFS LTSPSLKLIFSNILFSLLAESKMHSEALELYKAMRKEGMQPSITSLNLLLESLVSLNK FDKTINLFEEIIESGFRPNKFMYGKAVQAAVKLGDLKRANEYVHSMKKKGVSPSLFIY NALIGGVCKEKRIRDAEKLFHEMLERKLVASVVTYNTLIDGYCKVGELEKAFDLKERM VRENVEPNLVTFNILVGGLCRAHRMEDAKQVLKEMEAQGFAPDGFTCSIIFDGFLRSG NVKSALALYEEVSGKGVGINRYMLSNWLNYLCKEGKVEKAEEFLQKEIEKGFVPNEVV YNAIVNGYCRISNMNKAISMVEHMEKLGLRPDCVTFNSLIDKFCEMKEVEYAEEWVKM MREKGVLPNVETYNILINGYGQLCLLDRCFAIIEEMENRGIKPNVVSYGSIINYLCKD GKLLEAEITFRDMVSRGVLPNVLIYNMLIAGNCTAGKLKDAFRYFDEMVKGETRPTIV TYNTLINGLCKKGRVTETEDLLSQITSSGCTPDVITYNTLISGYSNEGNAHKCLELYE NMKNLGIKPTLNTYCPLISVCCKEGIELVQRLVCEMSEMHLTPDRLIYNILIHLYAEH GDVQAFALHHEMVERGICSDKMTYNSLILGHFRRGNLSEIKNLVSDMKVKGLVPKADT YDLLIRGYCEQKDFIGAYLWYREMLENHFLPRFTTCNKLLTGLTEQGRLQEAQIICSE MKVKGMDDWSFGEDLSAVVKM" mRNA join(4528944..4531077,4531143..4531326) /locus_tag="TCM_022424" /product="Pentatricopeptide (PPR) repeat-containing protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s25620.1" /inference="similar to AA sequence:frave:gene30131" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1196t4; inference alignment:Newbler:10:TSA:cgbaB_g00364t00002" CDS 4528957..4531011 /locus_tag="TCM_022424" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene30131" /codon_start=1 /product="Pentatricopeptide (PPR) repeat-containing protein, putative isoform 2" /protein_id="EOY08106.1" /db_xref="TAIR:AT5G12100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HVD7" /translation="MRKEGMQPSITSLNLLLESLVSLNKFDKTINLFEEIIESGFRPN KFMYGKAVQAAVKLGDLKRANEYVHSMKKKGVSPSLFIYNALIGGVCKEKRIRDAEKL FHEMLERKLVASVVTYNTLIDGYCKVGELEKAFDLKERMVRENVEPNLVTFNILVGGL CRAHRMEDAKQVLKEMEAQGFAPDGFTCSIIFDGFLRSGNVKSALALYEEVSGKGVGI NRYMLSNWLNYLCKEGKVEKAEEFLQKEIEKGFVPNEVVYNAIVNGYCRISNMNKAIS MVEHMEKLGLRPDCVTFNSLIDKFCEMKEVEYAEEWVKMMREKGVLPNVETYNILING YGQLCLLDRCFAIIEEMENRGIKPNVVSYGSIINYLCKDGKLLEAEITFRDMVSRGVL PNVLIYNMLIAGNCTAGKLKDAFRYFDEMVKGETRPTIVTYNTLINGLCKKGRVTETE DLLSQITSSGCTPDVITYNTLISGYSNEGNAHKCLELYENMKNLGIKPTLNTYCPLIS VCCKEGIELVQRLVCEMSEMHLTPDRLIYNILIHLYAEHGDVQAFALHHEMVERGICS DKMTYNSLILGHFRRGNLSEIKNLVSDMKVKGLVPKADTYDLLIRGYCEQKDFIGAYL WYREMLENHFLPRFTTCNKLLTGLTEQGRLQEAQIICSEMKVKGMDDWSFGEDLSAVV KM" gene complement(4532817..4534534) /locus_tag="TCM_022426" /note="dbxref CacaoGD:Thecc1EG022426" mRNA complement(join(4532817..4532856,4533328..4534534)) /locus_tag="TCM_022426" /product="Thioredoxin superfamily protein" /inference="alignment:exonerate- protein:2:ricco:29092.m000446" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028816t1" /inference="similar to AA sequence:ricco:29092.m000446" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.34 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2713t2" CDS complement(4533333..4534007) /locus_tag="TCM_022426" /note="dbxref ricco:29092.m000446; paralog of Thecc1EG028816t1" /codon_start=1 /product="Thioredoxin superfamily protein" /protein_id="EOY08108.1" /db_xref="TAIR:AT3G52960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q949U7" /translation="MAASLTVSRFLSPTVLSFSATTTKLYPKSFSSKLSFSPRSLNLH RRPSKPISFSTKTTQISASISVGDKLPDATLSYFDADGELQTTSVSSLTAGKKVVLFA VPGAFTPTCSQKHLPGFVEKSGELKAKGVDTIACVSVNDSFVMRAWKENLGINDEVLL LSDGNGEFTKKIGCELDLSDKPVGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAE DILKVL" mobile_element 4535881..4535922 /note="source:CACAO_M_S_E14850_F17_scaffold_2 4623 4664" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4535890..4535939) /note="source:CACAO_M_E49195_F17_scaffold_6 1623 1655" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 4537348..4541385 /locus_tag="TCM_022427" /note="dbxref CacaoGD:Thecc1EG022427" mRNA join(4537348..4537499,4537809..4537872,4537968..4538032, 4538127..4538174,4538512..4538598,4538701..4538781, 4538954..4539055,4539131..4539286,4539394..4539456, 4539546..4539623,4539792..4539986,4540101..4540151, 4540247..4540335,4540441..4540492,4540604..4540660, 4540812..4541385) /locus_tag="TCM_022427" /product="Enolase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s11800.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014984t1" /inference="similar to AA sequence:ricco:29092.m000447" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g01828t00001" CDS join(4537431..4537499,4537809..4537872,4537968..4538032, 4538127..4538174,4538512..4538598,4538701..4538781, 4538954..4539055,4539131..4539286,4539394..4539456, 4539546..4539623,4539792..4539986,4540101..4540151, 4540247..4540335,4540441..4540492,4540604..4540660, 4540812..4540892) /locus_tag="TCM_022427" /note="dbxref ricco:29092.m000447; paralog of Thecc1EG014984t1" /codon_start=1 /product="Enolase" /protein_id="EOY08109.1" /db_xref="TAIR:AT2G36530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P09104" /translation="MAVTIVSIKARQIFDSRGNPTVEVDVETSNGKKVRAAVPSGAST GVYEALELRDGGLDYLGKGVSKAVANVNTIIGPALIGKDPTEQTAIDNFMVQQLDGTQ NEWGWCKQKLGANAILAVSLAVCKAGAEVKNIPLYKHIANLAGNKKLVLPVPAFNVIN GGSHAGNKLAMQEFMILPIGASSFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGG FAPNIQENKEGLELLKTAIAKAGYTGKVVIGMDVAASEFYGSDKSYDLNFKEENNDGS QKIPGDALKDLYKSFASEYPIVSIEDPFDQDDWEHYTKLTYEIGEKVQIVGDDLLVTN PKRVEKAINEKACNALLLKVNQIGSVTESIEAVKMSKRAGWGVMASHRSGETEDTFIA DLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGADAVYAGASFRTPVEPY" mobile_element complement(4542364..4542792) /note="source:scaffold_4_CACTA_0482 5421 5897" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4542790..4542838) /note="source:scaffold_4_CACTA_0482 5120 5168" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4543068..4543263) /note="source:scaffold_4_CACTA_0482 4497 4695" /mobile_element_type="transposon:TIR/CACTA" gene complement(4543573..4546693) /locus_tag="TCM_022428" /note="dbxref CacaoGD:Thecc1EG022428" mRNA complement(join(4543573..4543886,4543984..4544119, 4544328..4544418,4544516..4544626,4545026..4545210, 4545301..4545532,4545619..4545695,4546584..4546693)) /locus_tag="TCM_022428" /product="Histone deacetylase 2C, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s11770.1.2" /inference="similar to AA sequence:Phytozome:GSVIVT01031404001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaL_g07478t00001" CDS complement(join(4543823..4543886,4543984..4544119, 4544328..4544418,4544516..4544626,4545026..4545210, 4545301..4545532,4545619..4545695,4546584..4546596)) /locus_tag="TCM_022428" /codon_start=1 /product="Histone deacetylase 2C, putative" /protein_id="EOY08110.1" /db_xref="Phytozome:GSVIVT01031404001" /db_xref="TAIR:AT5G03740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SN59" /translation="MEFWGAEVKNGQIFEVELEDDGSRILHLSQVALGEVTGDNKKEK GNETVCVYLKINDEKFVIGTLSQEKFPQIPLDLVLHDKFELSHTWKNGSVHFTGYYVD TSQGGDSQSEEELPEPTINPIKPHATESDPTASKEVKIVEPKKEEDGSDDEDEDDTSA EDEESSDDQEPGMLVNGENESDDDTDSDEDDSDEESSDEDQETPEKAEPSKKRPAEST TKTPAPEKKAKLVTPQKTDGKKVGGHTATPHPSKQAGKASAATGQVKQNPKLGGSSFP CKSCGRSFGSENALQSHSKAKHGAAV" mobile_element 4555140..4555440 /note="source:CACAO_M_S_E101805_F5_scaffold_9 1735 2032" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4555430..4557694 /note="source:CACAO_M_S_E101805_F5_scaffold_9 2322 4533" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4557992..4559520 /note="source:CACAO_M_E34424_F17_scaffold_5 1 1529" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4562030..4563557) /note="source:INTACT405F_F91_scaffold_4-int 16583 18091" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4563309..4563616 /note="source:INTACT61_F128_scaffold_2-int 837 1166" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4563748..4563839) /note="source:INTACT345_F202_scaffold_1-int 1429 1517" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4568839..4570753 /note="source:INTACT384F_F20_scaffold_3-int 8987 10895" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 4571469..4578484 /locus_tag="TCM_022431" /note="dbxref CacaoGD:Thecc1EG022431" mRNA join(4571469..4571661,4571805..4571922,4572014..4572084, 4572699..4572755,4573448..4573539,4574275..4574322, 4574603..4574723,4574853..4574899,4575618..4575699, 4576443..4576519,4576619..4576738,4577478..4577552, 4577646..4578484) /locus_tag="TCM_022431" /product="Ergosterol biosynthesis ERG4/ERG24 family isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g21450.1.3" /inference="similar to AA sequence:Phytozome:Glyma13g21450.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:PASA:2:TSA:puevd3b021712t1a2; inference alignment:Newbler:10:TSA:cgbaL_g07073t00001" mRNA join(4571469..4571699,4571805..4571922,4572014..4572084, 4572699..4572755,4573448..4573539,4574275..4574322, 4574603..4574723,4574853..4574899,4575618..4575699, 4576443..4576519,4576619..4576738,4577478..4577552, 4577646..4578482) /locus_tag="TCM_022431" /product="Ergosterol biosynthesis ERG4/ERG24 family isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g21450.1.3" /inference="similar to AA sequence:Phytozome:Glyma13g21450.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaL_g07073t00001" CDS join(4571652..4571699,4571805..4571922,4572014..4572084, 4572699..4572755,4573448..4573539,4574275..4574322, 4574603..4574723,4574853..4574899,4575618..4575699, 4576443..4576519,4576619..4576738,4577478..4577552, 4577646..4577799) /locus_tag="TCM_022431" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Ergosterol biosynthesis ERG4/ERG24 family isoform 1" /protein_id="EOY08111.1" /db_xref="Phytozome:Glyma13g21450.1" /db_xref="TAIR:AT3G52940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LDR4" /translation="MDLGYLLQALIPSWNSVAALAIFFAYLAIAGSILPGKLVPGVTL QDGSRLHYRCNGFLALVLLVGLLGIGFKMNFVSPAMISDRGFELLSATLIFSFLVMLV LYAAGCRSGSKGSSLKPHITGNLIHDWWYGIQLNPQFLGIDLKFFFVRAGMMGWLLIN LSILAKSVQDGSLSQSMILYQLFCLLYIVDYFVHEEYMTSTWDIIAERLGFMLVFGDL VWIPFTFSIQGWWLLNNKVELTTAAAIANCFVFLIGYLVFRGANKQKHVFKKNPKALI WGKPPKVIGGKLLASGYWGIARHSNYLGDLLLALSFSLPCGISSPIPYFYPIYLFILL VWRERRDEARCAEKYKEIWAEYCRLVPWRIFPYLY" CDS join(4572064..4572084,4572699..4572755,4573448..4573539, 4574275..4574322,4574603..4574723,4574853..4574899, 4575618..4575699,4576443..4576519,4576619..4576738, 4577478..4577552,4577646..4577799) /locus_tag="TCM_022431" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Ergosterol biosynthesis ERG4/ERG24 family isoform 2" /protein_id="EOY08112.1" /db_xref="Phytozome:Glyma13g21450.1" /db_xref="TAIR:AT3G52940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LDR4" /translation="MNFVSPAMISDRGFELLSATLIFSFLVMLVLYAAGCRSGSKGSS LKPHITGNLIHDWWYGIQLNPQFLGIDLKFFFVRAGMMGWLLINLSILAKSVQDGSLS QSMILYQLFCLLYIVDYFVHEEYMTSTWDIIAERLGFMLVFGDLVWIPFTFSIQGWWL LNNKVELTTAAAIANCFVFLIGYLVFRGANKQKHVFKKNPKALIWGKPPKVIGGKLLA SGYWGIARHSNYLGDLLLALSFSLPCGISSPIPYFYPIYLFILLVWRERRDEARCAEK YKEIWAEYCRLVPWRIFPYLY" mobile_element 4578937..4579662 /note="source:scaffold_4_CACTA_0482 16795 17512" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4579803..4579871) /note="source:scaffold_5_CACTA_0584 1921 1983" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4583329..4585028 /note="source:CACAO_M_E14795_F60_scaffold_3 1 1713" /mobile_element_type="retrotransposon:LTR/Gypsy" assembly_gap 4588265..4598264 /estimated_length=10000 /gap_type="between scaffolds" gene 4600471..4612294 /locus_tag="TCM_022433" /note="dbxref CacaoGD:Thecc1EG022433" mRNA join(4600471..4600629,4600898..4600989,4601098..4601794, 4602318..4604126,4604238..4604633,4605083..4605173, 4605254..4606715,4606804..4606883,4607014..4607098, 4607169..4607260,4607348..4607416,4607527..4607563, 4607661..4607743,4608143..4608598,4608995..4609031, 4609125..4609182,4609344..4609483,4609603..4609671, 4609771..4609885,4609968..4610006,4611463..4612294) /locus_tag="TCM_022433" /product="Repressor of gene silencing 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Sb08g008620.1" /inference="similar to AA sequence:ricco:29092.m000452" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2821t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2821t3; inference alignment:Newbler:10:TSA:cgbaP2_g05354t00001" mRNA join(4600471..4600629,4600898..4600989,4601098..4601794, 4602318..4604126,4604238..4604633,4605083..4605173, 4605254..4606715,4606804..4606883,4607014..4607098, 4607169..4607260,4607348..4607416,4607527..4607563, 4607661..4607743,4608143..4608598,4608995..4609031, 4609125..4609182,4609344..4609483,4609603..4609668, 4609771..4609885,4609968..4610006,4611465..4612294) /locus_tag="TCM_022433" /product="Repressor of gene silencing 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Sb08g008620.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033777001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2821t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2821t3" mRNA join(4600471..4600629,4600898..4600989,4601098..4601794, 4602318..4604126,4604238..4604633,4605083..4605173, 4605254..4606715,4606804..4606883,4607014..4607098, 4607169..4607260,4607348..4607416,4607527..4607563, 4607661..4607743,4608143..4608722) /locus_tag="TCM_022433" /product="Repressor of gene silencing 1 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Sb08g008620.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033777001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:PASA:2:TSA:puevd3b021714t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2821t3" CDS join(4601272..4601794,4602318..4604126,4604238..4604633, 4605083..4605173,4605254..4606715,4606804..4606883, 4607014..4607098,4607169..4607260,4607348..4607416, 4607527..4607563,4607661..4607743,4608143..4608598, 4608995..4609031,4609125..4609182,4609344..4609483, 4609603..4609668,4609771..4609885,4609968..4610006, 4611465..4611595) /locus_tag="TCM_022433" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Repressor of gene silencing 1 isoform 1" /protein_id="EOY08113.1" /db_xref="Phytozome:GSVIVT01033777001" /db_xref="TAIR:AT5G04560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6KFZ2" /translation="MSEQGQEQFEFQSPWVPATPFRPILPKPPVIHVGRQGNHISRAN CIGSESCSSGFTQESQADGVFACSHSASCTEVNGGVNNLKAALVGSTCISGDSYGQRQ CSLDLTELSNVPFADLLALANAASVASMSAASEGINRHHAECSSAGLLPVDVNLSAQQ NIWIDGNCTPKKHQDVIPPQNYDLNLPVKAMDVHSYTGISGFAPITPDKATRAERNED LEIENLYIENKTTEQREEQANELAAARVDVNGSQCSKELQKPVTESSLAAIPTKEIQN PDNGGSNLVDLDRTPQQKQRRKKHRPKVITEGKPRKISKPVTPKPSGSQENPTGKRKY VRKNRLNKDTSISPGEANGENSTRKRKYVRRKGLDKNSMIPTEEEIGEGATHPETLKH NKKSCRRVLDFDMEGQEKGESYACKSACNLNSSSGTENLGKGGSQSKSTMQICGGIEV AVENTQTGIAYELKDYISLPEDQAPGTPLLTKNNPPRRRRHTHSQKLNNMKGKDQATA HDGLRKNGQTVLQSDDQLPARSPNNSNCSSSSVLERGQASELKTNNSSATQQADSSTV ISYGSHYNNLCIYQMIPGMQFSNIHRRKRTEKGQNSATSSTSSSITAAKSLVAAEACP VDNIQVNPHQFTSSGVPAKIQEAGRKFSMEVSPTFNCIMALSQTDGLKKKRTRGATRV RDLASLNGIAQCKRHPECCSSQSPVDYDMQEVGNSDRPHTSIEVLVTEMQAKLAKKKR TKKRNCLVNSACSSTSEAQMHNKLITSNQNQFSAKLLGAPPEVIWKKMFSIDALVEQF NHLDINRQGVLIAYQEQTAVVPYNMRYEEHNALVLYRDGTIVPFGPIKKRRPRPKVDL DEETNRVWKLLLENINSEGIDGTDEEKAKWWEEERRVFRGRADSFIARMHLVQGDRRF SPWKGSVVDSVIGVFLTQNVSDHLSSSAFMSLAAHFPLKSKSNKESYHQEETSLLNGA AFYILQPEDTIKWDTKTSMQPVGDQSSMTVNGSGHSAEKEVVNSKEFSGSTATVSSTN ESKCKLLNSSGSGLNTYCDSTLNRSNMEIVGSGTECFKGDDETNDVLSSQNSVVSSEN SVDLSLVQTTERTGSCSESNSEGVDQTKQPILDILNSSTSFVQLLQMVDSARLHEVYG HQNMSTSENSKVERSQFHNDQRENWDNSGPKSFTGEAIPSANYHPHLTLNSEVREIEH LEMFKEETRSSEASKTKDENVMKGQSPSTEESACQTMDQNDSTMCVQVALQSSSGNNQ SSNNIQQDEMTDPHCQMGLLQDPRNLVESPTQNKEMLGHLNVSKHSEEILDITESTSA FDNQRSPQQKMQESNLYTCDSSADKELNGMNASTLKSKGRKAKKDKKDDFEWDSLRKQ AEANGRKRERTEKTMDSLDWEAVRSADVNEIAKTIKERGMNNMLAERIKDFLNRLVRD HGSIDLEWLRDVPPDKAKEYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRL GWVPLQPLPESLQLHLLELYPILESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCT KSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSATENRTSDQNHAVIIDQLA LPLPQPTEQSDRNLQLQAKSGVNNCDPIIEEPASPEPECKQVAEIDIEEMFCEDPDEI PTIKLNMEEFTQNLQNYMQNNMELQEADMSKALVALTADAASIPTPKLKNVSRLRTEH QVYELPDSHPLLKELDKREPDDPCKYLLAIWTPGETANSIQPPQRRCNSQEHGKLCDE MTCFSCNSIREAESQIVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDV PREWLWNLPRRMVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMAR LHFPASKLTRGKGRGRGAGEDE" CDS join(4601272..4601794,4602318..4604126,4604238..4604633, 4605083..4605173,4605254..4606715,4606804..4606883, 4607014..4607098,4607169..4607260,4607348..4607416, 4607527..4607563,4607661..4607743,4608143..4608598, 4608995..4609031,4609125..4609182,4609344..4609483, 4609603..4609671,4609771..4609885,4609968..4610006, 4611463..4611479) /locus_tag="TCM_022433" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29092.m000452" /codon_start=1 /product="Repressor of gene silencing 1 isoform 2" /protein_id="EOY08114.1" /db_xref="TAIR:AT5G04560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6KFZ2" /translation="MSEQGQEQFEFQSPWVPATPFRPILPKPPVIHVGRQGNHISRAN CIGSESCSSGFTQESQADGVFACSHSASCTEVNGGVNNLKAALVGSTCISGDSYGQRQ CSLDLTELSNVPFADLLALANAASVASMSAASEGINRHHAECSSAGLLPVDVNLSAQQ NIWIDGNCTPKKHQDVIPPQNYDLNLPVKAMDVHSYTGISGFAPITPDKATRAERNED LEIENLYIENKTTEQREEQANELAAARVDVNGSQCSKELQKPVTESSLAAIPTKEIQN PDNGGSNLVDLDRTPQQKQRRKKHRPKVITEGKPRKISKPVTPKPSGSQENPTGKRKY VRKNRLNKDTSISPGEANGENSTRKRKYVRRKGLDKNSMIPTEEEIGEGATHPETLKH NKKSCRRVLDFDMEGQEKGESYACKSACNLNSSSGTENLGKGGSQSKSTMQICGGIEV AVENTQTGIAYELKDYISLPEDQAPGTPLLTKNNPPRRRRHTHSQKLNNMKGKDQATA HDGLRKNGQTVLQSDDQLPARSPNNSNCSSSSVLERGQASELKTNNSSATQQADSSTV ISYGSHYNNLCIYQMIPGMQFSNIHRRKRTEKGQNSATSSTSSSITAAKSLVAAEACP VDNIQVNPHQFTSSGVPAKIQEAGRKFSMEVSPTFNCIMALSQTDGLKKKRTRGATRV RDLASLNGIAQCKRHPECCSSQSPVDYDMQEVGNSDRPHTSIEVLVTEMQAKLAKKKR TKKRNCLVNSACSSTSEAQMHNKLITSNQNQFSAKLLGAPPEVIWKKMFSIDALVEQF NHLDINRQGVLIAYQEQTAVVPYNMRYEEHNALVLYRDGTIVPFGPIKKRRPRPKVDL DEETNRVWKLLLENINSEGIDGTDEEKAKWWEEERRVFRGRADSFIARMHLVQGDRRF SPWKGSVVDSVIGVFLTQNVSDHLSSSAFMSLAAHFPLKSKSNKESYHQEETSLLNGA AFYILQPEDTIKWDTKTSMQPVGDQSSMTVNGSGHSAEKEVVNSKEFSGSTATVSSTN ESKCKLLNSSGSGLNTYCDSTLNRSNMEIVGSGTECFKGDDETNDVLSSQNSVVSSEN SVDLSLVQTTERTGSCSESNSEGVDQTKQPILDILNSSTSFVQLLQMVDSARLHEVYG HQNMSTSENSKVERSQFHNDQRENWDNSGPKSFTGEAIPSANYHPHLTLNSEVREIEH LEMFKEETRSSEASKTKDENVMKGQSPSTEESACQTMDQNDSTMCVQVALQSSSGNNQ SSNNIQQDEMTDPHCQMGLLQDPRNLVESPTQNKEMLGHLNVSKHSEEILDITESTSA FDNQRSPQQKMQESNLYTCDSSADKELNGMNASTLKSKGRKAKKDKKDDFEWDSLRKQ AEANGRKRERTEKTMDSLDWEAVRSADVNEIAKTIKERGMNNMLAERIKDFLNRLVRD HGSIDLEWLRDVPPDKAKEYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRL GWVPLQPLPESLQLHLLELYPILESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCT KSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSATENRTSDQNHAVIIDQLA LPLPQPTEQSDRNLQLQAKSGVNNCDPIIEEPASPEPECKQVAEIDIEEMFCEDPDEI PTIKLNMEEFTQNLQNYMQNNMELQEADMSKALVALTADAASIPTPKLKNVSRLRTEH QVYELPDSHPLLKELDKREPDDPCKYLLAIWTPGETANSIQPPQRRCNSQEHGKLCDE MTCFSCNSIREAESQIVRGTLLIPCRTAMRGSFPLNGTYFQVNEVVFADHDSSLNPID VPREWLWNLPRRMVYFGTSIPSIFKGLTTEGIQHCFWREDMFV" CDS join(4601272..4601794,4602318..4604126,4604238..4604633, 4605083..4605173,4605254..4606715,4606804..4606883, 4607014..4607098,4607169..4607260,4607348..4607416, 4607527..4607563,4607661..4607743,4608143..4608602) /locus_tag="TCM_022433" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Repressor of gene silencing 1 isoform 3" /protein_id="EOY08115.1" /db_xref="Phytozome:GSVIVT01033777001" /db_xref="TAIR:AT5G04560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6KFZ2" /translation="MSEQGQEQFEFQSPWVPATPFRPILPKPPVIHVGRQGNHISRAN CIGSESCSSGFTQESQADGVFACSHSASCTEVNGGVNNLKAALVGSTCISGDSYGQRQ CSLDLTELSNVPFADLLALANAASVASMSAASEGINRHHAECSSAGLLPVDVNLSAQQ NIWIDGNCTPKKHQDVIPPQNYDLNLPVKAMDVHSYTGISGFAPITPDKATRAERNED LEIENLYIENKTTEQREEQANELAAARVDVNGSQCSKELQKPVTESSLAAIPTKEIQN PDNGGSNLVDLDRTPQQKQRRKKHRPKVITEGKPRKISKPVTPKPSGSQENPTGKRKY VRKNRLNKDTSISPGEANGENSTRKRKYVRRKGLDKNSMIPTEEEIGEGATHPETLKH NKKSCRRVLDFDMEGQEKGESYACKSACNLNSSSGTENLGKGGSQSKSTMQICGGIEV AVENTQTGIAYELKDYISLPEDQAPGTPLLTKNNPPRRRRHTHSQKLNNMKGKDQATA HDGLRKNGQTVLQSDDQLPARSPNNSNCSSSSVLERGQASELKTNNSSATQQADSSTV ISYGSHYNNLCIYQMIPGMQFSNIHRRKRTEKGQNSATSSTSSSITAAKSLVAAEACP VDNIQVNPHQFTSSGVPAKIQEAGRKFSMEVSPTFNCIMALSQTDGLKKKRTRGATRV RDLASLNGIAQCKRHPECCSSQSPVDYDMQEVGNSDRPHTSIEVLVTEMQAKLAKKKR TKKRNCLVNSACSSTSEAQMHNKLITSNQNQFSAKLLGAPPEVIWKKMFSIDALVEQF NHLDINRQGVLIAYQEQTAVVPYNMRYEEHNALVLYRDGTIVPFGPIKKRRPRPKVDL DEETNRVWKLLLENINSEGIDGTDEEKAKWWEEERRVFRGRADSFIARMHLVQGDRRF SPWKGSVVDSVIGVFLTQNVSDHLSSSAFMSLAAHFPLKSKSNKESYHQEETSLLNGA AFYILQPEDTIKWDTKTSMQPVGDQSSMTVNGSGHSAEKEVVNSKEFSGSTATVSSTN ESKCKLLNSSGSGLNTYCDSTLNRSNMEIVGSGTECFKGDDETNDVLSSQNSVVSSEN SVDLSLVQTTERTGSCSESNSEGVDQTKQPILDILNSSTSFVQLLQMVDSARLHEVYG HQNMSTSENSKVERSQFHNDQRENWDNSGPKSFTGEAIPSANYHPHLTLNSEVREIEH LEMFKEETRSSEASKTKDENVMKGQSPSTEESACQTMDQNDSTMCVQVALQSSSGNNQ SSNNIQQDEMTDPHCQMGLLQDPRNLVESPTQNKEMLGHLNVSKHSEEILDITESTSA FDNQRSPQQKMQESNLYTCDSSADKELNGMNASTLKSKGRKAKKDKKDDFEWDSLRKQ AEANGRKRERTEKTMDSLDWEAVRSADVNEIAKTIKERGMNNMLAERIKDFLNRLVRD HGSIDLEWLRDVPPDKAKEYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRL GWVPLQPLPESLQLHLLELYPILESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCT KSKPNCNACPMRGECRHFASAFASARLALPGPEEKSIVSATENRTSDQNHAVIIDQLA LPLPQPTEQSDRNLQLQAKSGVNNCDPIIEEPASPEPECKQVAEIDIEEMFCEDPDEI PTIKLNMEEFTQNLQNYMQNNMELQEADMSKALVALTADAASIPTPKLKNVSRLRTEH QV" mobile_element 4615528..4616056 /note="source:INTACT551_F248_scaffold_7-int 19057 19588" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4616993..4617492 /note="source:INTACT497_F83_scaffold_2-int 2412 2905" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4618973..4620489 /note="source:CACAO_M_S_E85282_F17_scaffold_7 28 1555" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4624202..4624747 /note="source:CACAO_M_E69245_F73_scaffold_9 1 546" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4624848..4626367) /note="source:CACAO_M_E72831_F73_scaffold_10 1 1522" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4630435..4631919) /note="source:CACAO_M_E49053_F17_scaffold_6 543 1507" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4631920..4636323 /note="source:CACAO_M_E48701_F73_scaffold_6 1 4663" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 4635907..4636636 /locus_tag="TCM_022438" /note="dbxref CacaoGD:Thecc1EG022438" mRNA 4635907..4636636 /locus_tag="TCM_022438" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.68 coverage" CDS 4636176..4636376 /locus_tag="TCM_022438" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08116.1" /translation="MRNSRFLIKEITEEVEHRIKDNTHLFYELISEILRIKFYFKEGS VVPKLVLGDTLRWASNRVCQGC" mobile_element complement(4636309..4638657) /note="source:CACAO_M_S_E64023_F13_scaffold_5 5812 8173" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4640351..4641206) /note="source:CACAO_M_S_E64023_F13_scaffold_5 253 1120" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4641207..4641534 /note="source:CACAO_M_E42514_F40_scaffold_5 2350 3429" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(4653373..4653481) /note="source:INTACT1818F_F49_scaffold_11-int 19944 20055" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4656060..4657338 /note="source:scaffold_2_CACTA_0253 7254 8540" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4657339..4660269 /note="source:CACAO_M_E14474_F86_scaffold_3 1 2945" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4660270..4660610) /note="source:CACAO_M_E12773_F323_scaffold_3 1 306" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4660611..4660666) /note="source:CACAO_M_E52662_F215_scaffold_7 14000 14054" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4660658..4662405 /note="source:scaffold_2_CACTA_0253 7254 8995" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4662411..4663986 /note="source:scaffold_2_CACTA_0253 7435 8995" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4662713..4666541 /note="source:INTACT691_F9_scaffold_7-int 271 4097" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4666860..4667014) /note="source:CACAO_Mutator_E1998_scaffold_9 11076 11230" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(4667192..4667467) /note="source:CACAO_Again_on_E27_scaffold_1 398 668" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(4667254..4667591) /note="source:CACAO_Mutator_E1998_scaffold_9 10712 11076" /mobile_element_type="transposon:TIR/Mutator" gene 4668857..4685557 /locus_tag="TCM_022441" /note="dbxref CacaoGD:Thecc1EG022441" mRNA join(4668857..4668958,4669322..4670483,4671540..4671841, 4671933..4672077,4672262..4672365,4672763..4672971, 4673628..4674041,4674165..4674205,4674504..4674572, 4675628..4675728,4675887..4675971,4676091..4676189, 4676882..4676950,4677047..4677178,4677823..4677917, 4678020..4678227,4679899..4680018,4683208..4683358, 4685465..4685557) /locus_tag="TCM_022441" /product="Map3k delta-1 protein kinase, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g21480.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043844t2" /inference="similar to AA sequence:ricco:29092.m000453" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2781t3" mRNA join(4668857..4668958,4669322..4670483,4671540..4671841, 4671933..4672077,4672262..4672365,4672763..4672971, 4673628..4674041,4674165..4674205,4674504..4674572, 4675628..4675728,4675887..4675971,4676091..4676189, 4676882..4676950,4677047..4677178,4677802..4677917, 4678020..4678227,4679899..4680147) /locus_tag="TCM_022441" /product="Map3k delta-1 protein kinase, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g21480.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043844t2" /inference="similar to AA sequence:ricco:29092.m000453" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:PASA:2:TSA:puevd3b021721t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2781t3" mRNA join(4669479..4670483,4671540..4671841,4671933..4672077, 4672262..4672365,4672763..4672971,4673628..4674017, 4674549..4675147) /locus_tag="TCM_022441" /product="Map3k delta-1 protein kinase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g21480.1" /inference="similar to AA sequence:ricco:29092.m000453" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc866t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2781t3" CDS join(4669869..4670483,4671540..4671841,4671933..4672077, 4672262..4672365,4672763..4672971,4673628..4674041, 4674165..4674205,4674504..4674572,4675628..4675728, 4675887..4675971,4676091..4676189,4676882..4676950, 4677047..4677178,4677823..4677917,4678020..4678128) /locus_tag="TCM_022441" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29092.m000453; paralog of Thecc1EG043844t2" /codon_start=1 /product="Map3k delta-1 protein kinase, putative isoform 1" /protein_id="EOY08117.1" /db_xref="TAIR:AT5G03730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SRG7" /translation="MEMPGRRSNYSLLSQYPDDQYSVSISGAPSPYYDSLSSDATSNK NNKVKSERGLIDWDQNQSQNQQQANRVGGGGGGGGGNIYASSIGLQRQSSGSSFGESS LSGDYYVPTLSTTAANEIDAFVYGHDESFRHGDLRAKVGGSSSGKSWAQQTEESYQLQ LALALRLSSEATCADDPNFLDPVPDDSTIRTASSSSAETVSHRFWVNGCLSYFDKVPD GFYLIHGVNPYVWTVCTDLHEHGRIPSIESLRSVDPTVDSPLEVILVDRRSDPSLKEL QNRVHNISCSCITTKEVVDQLAKLVCSRMGGSSTTGEDDFVSYWRECSDDLKDCLGSV VVPIGSLSVGLCRHRALLFKVLADTIDLPCRVAKGCKYCKRDDASSCLVRFGLDREYL VDLIGNPGYLCEPDSLLNGPSSISISSPLRFPCLKPAVPAIDFRSLAKQYFSDCESLN LVFDDAPAGATEENPGFSLYPKKVDKIVTGRNNLVQISSNMDDISQLPLHPNIARPTA HDRDSQYSQSIIHSKNIIKDPLKRISPIGHRDVPILLLSDPMGDSDKDSRYAEGSQLV PSKPSRELALEVDDLDIPWNDLVLKERIGAGSFGTVHRAEWNGSDVAVKILMEQDLHA ERFKEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSMYRLLHKPGLREV LDERRRLSMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKAN TFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVVA AVGFKGKRLDIPHDLNPQLAAIIEDCWANEPWKRPSFSNIMDRLKSLIKPSTPQPGRV DMPMLT" CDS join(4669869..4670483,4671540..4671841,4671933..4672077, 4672262..4672365,4672763..4672971,4673628..4674041, 4674165..4674205,4674504..4674572,4675628..4675728, 4675887..4675971,4676091..4676189,4676882..4676950, 4677047..4677178,4677802..4677810) /locus_tag="TCM_022441" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29092.m000453; paralog of Thecc1EG043844t2" /codon_start=1 /product="Map3k delta-1 protein kinase, putative isoform 2" /protein_id="EOY08118.1" /db_xref="TAIR:AT5G03730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SRG7" /translation="MEMPGRRSNYSLLSQYPDDQYSVSISGAPSPYYDSLSSDATSNK NNKVKSERGLIDWDQNQSQNQQQANRVGGGGGGGGGNIYASSIGLQRQSSGSSFGESS LSGDYYVPTLSTTAANEIDAFVYGHDESFRHGDLRAKVGGSSSGKSWAQQTEESYQLQ LALALRLSSEATCADDPNFLDPVPDDSTIRTASSSSAETVSHRFWVNGCLSYFDKVPD GFYLIHGVNPYVWTVCTDLHEHGRIPSIESLRSVDPTVDSPLEVILVDRRSDPSLKEL QNRVHNISCSCITTKEVVDQLAKLVCSRMGGSSTTGEDDFVSYWRECSDDLKDCLGSV VVPIGSLSVGLCRHRALLFKVLADTIDLPCRVAKGCKYCKRDDASSCLVRFGLDREYL VDLIGNPGYLCEPDSLLNGPSSISISSPLRFPCLKPAVPAIDFRSLAKQYFSDCESLN LVFDDAPAGATEENPGFSLYPKKVDKIVTGRNNLVQISSNMDDISQLPLHPNIARPTA HDRDSQYSQSIIHSKNIIKDPLKRISPIGHRDVPILLLSDPMGDSDKDSRYAEGSQLV PSKPSRELALEVDDLDIPWNDLVLKERIGAGSFGTVHRAEWNGSDVAVKILMEQDLHA ERFKEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSMYRLLHKPGLREV LDERRRLSMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKAN TFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQPM" CDS join(4669869..4670483,4671540..4671841,4671933..4672077, 4672262..4672365,4672763..4672971,4673628..4674017, 4674549..4674556) /locus_tag="TCM_022441" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29092.m000453" /codon_start=1 /product="Map3k delta-1 protein kinase isoform 3" /protein_id="EOY08119.1" /db_xref="TAIR:AT5G03730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SRG7" /translation="MEMPGRRSNYSLLSQYPDDQYSVSISGAPSPYYDSLSSDATSNK NNKVKSERGLIDWDQNQSQNQQQANRVGGGGGGGGGNIYASSIGLQRQSSGSSFGESS LSGDYYVPTLSTTAANEIDAFVYGHDESFRHGDLRAKVGGSSSGKSWAQQTEESYQLQ LALALRLSSEATCADDPNFLDPVPDDSTIRTASSSSAETVSHRFWVNGCLSYFDKVPD GFYLIHGVNPYVWTVCTDLHEHGRIPSIESLRSVDPTVDSPLEVILVDRRSDPSLKEL QNRVHNISCSCITTKEVVDQLAKLVCSRMGGSSTTGEDDFVSYWRECSDDLKDCLGSV VVPIGSLSVGLCRHRALLFKVLADTIDLPCRVAKGCKYCKRDDASSCLVRFGLDREYL VDLIGNPGYLCEPDSLLNGPSSISISSPLRFPCLKPAVPAIDFRSLAKQYFSDCESLN LVFDDAPAGATEENPGFSLYPKKVDKIVTGRNNLVQISSNMDDISQLPLHPNIARPTA HDRDSQYSQSIIHSKNIIKDPLKRISPIGHRDVPILLLSDPMGDSDKDSRYAEGSQLV PSKPSRELALEVDDLDIPWNDLAL" mobile_element complement(4678901..4679000) /note="source:CACAO_Mutator_E1149_scaffold_5 5990 6098" /mobile_element_type="transposon:TIR/Mutator" mobile_element 4682138..4683017 /note="source:CACAO_Again_on_E27_scaffold_1 389 966" /mobile_element_type="transposon:TIR/hAT" mobile_element 4683156..4683330 /note="source:CACAO_Mutator_E1998_scaffold_9 11076 11248" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(4686386..4687257) /note="source:CACAO_M_E33977_F20_scaffold_4 15686 16545" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4687671..4687701 /note="source:CACAO_on_S_E176_scaffold_5 1 28" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(4687702..4688117) /note="source:scaffold_1_CACTA_0009 12785 13294" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4687846..4688157) /note="source:CACAO_Mutator_E1012_scaffold_5 3363 3686" /mobile_element_type="transposon:TIR/Mutator" mobile_element 4688118..4697025 /note="source:CACAO_on_S_E176_scaffold_5 29 8337" /mobile_element_type="transposon:TIR/Mutator" gene 4698981..4701794 /locus_tag="TCM_022446" /note="dbxref CacaoGD:Thecc1EG022446" mRNA join(4698981..4699723,4700577..4701794) /locus_tag="TCM_022446" /product="DNA binding protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s11680.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s11680.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2749t2" CDS join(4699370..4699723,4700577..4701653) /locus_tag="TCM_022446" /codon_start=1 /product="DNA binding protein, putative" /protein_id="EOY08120.1" /db_xref="Phytozome:POPTR_0006s11680.1" /db_xref="TAIR:AT5G03720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SRG8" /translation="MNPEDEKRSPSSPPNPPQTLPFPSPLVELETFSTSAPAEKEFIG VPRPLEILQGNPVPPFLSKTFDLVDDTSLDPIISWGPTGESFVVWDPLEFSRLILPRN FKHNNFSSFVRQLNTYGFRKIDTDKWEFANEAFQRGRRHLLKNIQRRKSPQSQQVGNY FGASTEAGRSGLEGEIERLRKEKSVLMQEVVDLQQHHQGTARNVEVVGQRLQAAEKRQ KQMVSFLVKLFQNPAFLARLKQKKEQGEFGSPRMRRKFVRHQQLELLNSEPPVEGQLV EYKPDWRNLAISSSAPDSNPISVEQSPDYLPEGLDGIDLGAECLPFQIDNEVVVSDEL AVAHGYIRTSELVGEGTSALGSKDSHIKGKNIIGSEQEVIPGYLVSFPEELVKHKSSS EFSSSIGETVAKHEDIWSMGFDVTAGMSSSSNELWGNLESYDIPELGVTGELPDVWDL GFVQTAEDSGTDKWPIEESPFDNPET" gene complement(4702660..4705748) /locus_tag="TCM_022447" /note="dbxref CacaoGD:Thecc1EG022447" mRNA complement(join(4702660..4703410,4703511..4703576, 4703659..4703901,4703984..4704229,4705150..4705353, 4705468..4705542,4705647..4705748)) /locus_tag="TCM_022447" /product="Ribosomal RNA processing Brix domain protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033782001" /inference="similar to AA sequence:Phytozome:GSVIVT01033782001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00679t00001_C1" CDS complement(join(4703294..4703410,4703511..4703576, 4703659..4703901,4703984..4704229,4705150..4705353, 4705468..4705536)) /locus_tag="TCM_022447" /codon_start=1 /product="Ribosomal RNA processing Brix domain protein" /protein_id="EOY08121.1" /db_xref="Phytozome:GSVIVT01033782001" /db_xref="TAIR:AT3G23620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LUG5" /translation="MMRIKTPKKGRVKRELEKRAPKLVETGKKTLILQGTKTSSILNA VLSEICHLKKGGVVRYTRKNDNIRPFESGGETSLEFFSLKTDCSIFVYGSHSKKRPNN LVIGRTYDHHIYDLVEVGVENFKSIESFTYDKKLAPLMGSKPFIAFVGEGFENVDELK HLKEVLLDLLRGEVVENINLAGLDRAYVCTAISSNKVYLSHCALRLKKSGTVVPRMEL VEVGPSMDLVVRRHRLPNEGLRKEAMKTAKDQPKKKIKNVSTDAVQGTIGKIYIPDQK IGDMALPNKAKGVKRERREAKKKEANEHASKKQKEESE" mobile_element 4705378..4705430 /note="source:CACAO_M_S_E89710_F231_scaffold_8 1162 1213" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 4705893..4713190 /locus_tag="TCM_022448" /note="dbxref CacaoGD:Thecc1EG022448" mRNA join(4705893..4706768,4708167..4708268,4708502..4708759, 4709140..4709262,4709339..4709800,4710145..4712163, 4712306..4713190) /locus_tag="TCM_022448" /product="ENTH/VHS family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29092.m000457" /inference="similar to AA sequence:ricco:29092.m000457" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1225t9" mRNA join(4705951..4706768,4708502..4708759,4709140..4709262, 4709339..4709800,4710145..4712163,4712306..4713189) /locus_tag="TCM_022448" /product="ENTH/VHS family protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s11670.1" /inference="alignment:exonerate- protein:2:ricco:29092.m000457" /inference="similar to AA sequence:ricco:29092.m000457" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1236t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1225t9; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1233t8" mRNA join(4706072..4706768,4708167..4708268,4708502..4708759, 4709140..4709262,4709441..4709800,4710145..4712163, 4712306..4713189) /locus_tag="TCM_022448" /product="ENTH/VHS family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s11670.1" /inference="alignment:exonerate- protein:2:ricco:29092.m000457" /inference="similar to AA sequence:ricco:29092.m000457" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1225t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1225t9; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1233t8" CDS join(4706370..4706768,4708167..4708268,4708502..4708759, 4709140..4709262,4709339..4709800,4710145..4712163, 4712306..4712320) /locus_tag="TCM_022448" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29092.m000457" /codon_start=1 /product="ENTH/VHS family protein, putative isoform 1" /protein_id="EOY08122.1" /db_xref="TAIR:AT2G36480.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IMX9" /translation="MLINMENQRRSFDRSRELGLKKPRLTEDLAPNPNGRPFPQRPNP VGAASALRFRSTDSETGDLSRGGGAYEPQPVPHQQQQQQHQELVSQYKTALAELTFNS KPIITNLTIIAGENLHAAKAIASTVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKY FAARLPEVFCKAYRQVDPPVHQSMRHLFGTWKGVFPPQPLQMIEKELGFAPMINGSSS GTTTSRPDPLSQRPPHSIHVNPKYLEKQRLQQSSRVKGMVNDMTETMSSSKEDSERPD RAAITAGRPYVDPSVKMNNIQRSHRDMFNEPVREKNIGATFGDYDYGSDLLQTPGMGV GRTGGKVTDQGNDRPWYGATSSVTEMISSQRNGFNIKHGSQNYSASKSVNADPRLQAT KNIAGRSSSGLSSSWKNSEEEEFMWEMHSRLSEHDAANISNNSRKDHWTPDVSEKLDF ETQLRKAQSVHDVGSRFDRERETTADSLSTEQKDKTSYGRRISSAWPLLESNKTDGLP TNNLGHSESYSATIGGLPTGASSSLARIGMRPQKILANVASGSTSTLGQQRFQPLGTA SPPEQSPMRQHSPSPSFPGRHPHQQLQKLAEQDYPQAHSLPRTDPKPSHFSGKLNVGS HKHSSQASSALISSYQPSCHYPFGQPPQPDSVQAEPSSQTQKPLPSQISKVGAASTLG IASEQANPLAIGTSELSSTSSLLAAVMKSGILSSNSFTGSLPNKISQDVGQIPSQPPL PNGPPPAVFTSSGLRVDSGTSSGSASHDALAATTNSSQGKVEQPPLPPGPPPPALVSN APAQTSDAESKASNPISNLLSSLVAKGLISASKKDASSLLSHQIPTQMQESLGMERPT QMQESLGMERHTQMQKESLGMEMPTESPNQSSGISTSSPLPASSIPSSSDDPSSSTMD EVSFAEPATKSSVALHQSAAMEEENLIGLEFRPDVIREFHSSVISKLLDDLPHCCSLC GLRLKLQERLDRHLECHAMKKTESEGSNRALRGWYARSDDWIGGKPGQFAFESTGSVN QLEKTTAKSELMVPADENQYACMLCGELFEDYFCQIRGEWMFKGAVYLTIPSKDGEVG TTNGSAGNGPIVHANCISESSVHDLGLAGGVKLENEE" CDS join(4706370..4706768,4708167..4708268,4708502..4708759, 4709140..4709262,4709441..4709800,4710145..4712163, 4712306..4712320) /locus_tag="TCM_022448" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29092.m000457" /codon_start=1 /product="ENTH/VHS family protein, putative isoform 2" /protein_id="EOY08123.1" /db_xref="TAIR:AT2G36480.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IMX9" /translation="MLINMENQRRSFDRSRELGLKKPRLTEDLAPNPNGRPFPQRPNP VGAASALRFRSTDSETGDLSRGGGAYEPQPVPHQQQQQQHQELVSQYKTALAELTFNS KPIITNLTIIAGENLHAAKAIASTVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKY FAARLPEVFCKAYRQVDPPVHQSMRHLFGTWKGVFPPQPLQMIEKELGFAPMINGSSS GTTTSRPDPLSQRPPHSIHVNPKYLEKQRLQQSSRVKGMVNDMTETMSSSKEDSERPD RAAITAGRPYVDPSVKMNTPGMGVGRTGGKVTDQGNDRPWYGATSSVTEMISSQRNGF NIKHGSQNYSASKSVNADPRLQATKNIAGRSSSGLSSSWKNSEEEEFMWEMHSRLSEH DAANISNNSRKDHWTPDVSEKLDFETQLRKAQSVHDVGSRFDRERETTADSLSTEQKD KTSYGRRISSAWPLLESNKTDGLPTNNLGHSESYSATIGGLPTGASSSLARIGMRPQK ILANVASGSTSTLGQQRFQPLGTASPPEQSPMRQHSPSPSFPGRHPHQQLQKLAEQDY PQAHSLPRTDPKPSHFSGKLNVGSHKHSSQASSALISSYQPSCHYPFGQPPQPDSVQA EPSSQTQKPLPSQISKVGAASTLGIASEQANPLAIGTSELSSTSSLLAAVMKSGILSS NSFTGSLPNKISQDVGQIPSQPPLPNGPPPAVFTSSGLRVDSGTSSGSASHDALAATT NSSQGKVEQPPLPPGPPPPALVSNAPAQTSDAESKASNPISNLLSSLVAKGLISASKK DASSLLSHQIPTQMQESLGMERPTQMQESLGMERHTQMQKESLGMEMPTESPNQSSGI STSSPLPASSIPSSSDDPSSSTMDEVSFAEPATKSSVALHQSAAMEEENLIGLEFRPD VIREFHSSVISKLLDDLPHCCSLCGLRLKLQERLDRHLECHAMKKTESEGSNRALRGW YARSDDWIGGKPGQFAFESTGSVNQLEKTTAKSELMVPADENQYACMLCGELFEDYFC QIRGEWMFKGAVYLTIPSKDGEVGTTNGSAGNGPIVHANCISESSVHDLGLAGGVKLE NEE" CDS join(4706370..4706768,4708502..4708759,4709140..4709262, 4709339..4709800,4710145..4712163,4712306..4712320) /locus_tag="TCM_022448" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29092.m000457" /codon_start=1 /product="ENTH/VHS family protein, putative isoform 3" /protein_id="EOY08124.1" /db_xref="TAIR:AT2G36480.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IMX9" /translation="MLINMENQRRSFDRSRELGLKKPRLTEDLAPNPNGRPFPQRPNP VGAASALRFRSTDSETGDLSRGGGAYEPQPVPHQQQQQQHQELVSQYKTALAELTFNS KPIITNLTIIAGENLHAAKAIASTVCANILEVFCKAYRQVDPPVHQSMRHLFGTWKGV FPPQPLQMIEKELGFAPMINGSSSGTTTSRPDPLSQRPPHSIHVNPKYLEKQRLQQSS RVKGMVNDMTETMSSSKEDSERPDRAAITAGRPYVDPSVKMNNIQRSHRDMFNEPVRE KNIGATFGDYDYGSDLLQTPGMGVGRTGGKVTDQGNDRPWYGATSSVTEMISSQRNGF NIKHGSQNYSASKSVNADPRLQATKNIAGRSSSGLSSSWKNSEEEEFMWEMHSRLSEH DAANISNNSRKDHWTPDVSEKLDFETQLRKAQSVHDVGSRFDRERETTADSLSTEQKD KTSYGRRISSAWPLLESNKTDGLPTNNLGHSESYSATIGGLPTGASSSLARIGMRPQK ILANVASGSTSTLGQQRFQPLGTASPPEQSPMRQHSPSPSFPGRHPHQQLQKLAEQDY PQAHSLPRTDPKPSHFSGKLNVGSHKHSSQASSALISSYQPSCHYPFGQPPQPDSVQA EPSSQTQKPLPSQISKVGAASTLGIASEQANPLAIGTSELSSTSSLLAAVMKSGILSS NSFTGSLPNKISQDVGQIPSQPPLPNGPPPAVFTSSGLRVDSGTSSGSASHDALAATT NSSQGKVEQPPLPPGPPPPALVSNAPAQTSDAESKASNPISNLLSSLVAKGLISASKK DASSLLSHQIPTQMQESLGMERPTQMQESLGMERHTQMQKESLGMEMPTESPNQSSGI STSSPLPASSIPSSSDDPSSSTMDEVSFAEPATKSSVALHQSAAMEEENLIGLEFRPD VIREFHSSVISKLLDDLPHCCSLCGLRLKLQERLDRHLECHAMKKTESEGSNRALRGW YARSDDWIGGKPGQFAFESTGSVNQLEKTTAKSELMVPADENQYACMLCGELFEDYFC QIRGEWMFKGAVYLTIPSKDGEVGTTNGSAGNGPIVHANCISESSVHDLGLAGGVKLE NEE" gene complement(4713871..4714762) /locus_tag="TCM_022449" /note="dbxref CacaoGD:Thecc1EG022449" mRNA complement(join(4713871..4714197,4714312..4714388, 4714494..4714762)) /locus_tag="TCM_022449" /product="Phytosulfokine 3 precursor, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033785001" /inference="similar to AA sequence:Phytozome:GSVIVT01033785001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g15417t00001" CDS complement(join(4714090..4714197,4714312..4714388, 4714494..4714590)) /locus_tag="TCM_022449" /codon_start=1 /product="Phytosulfokine 3 precursor, putative" /protein_id="EOY08125.1" /db_xref="Phytozome:GSVIVT01033785001" /translation="MKEKFLGLITFLLFAFLLCSYSTSARLLAQKQGEKELKANQINQ AGLLTTDMKEDFSNLMGSEECHEKDEECLKRRMIAEAHLDYIYTQHHKP" mobile_element 4719552..4719780 /note="source:CACAO_M_S_E89247_F225_scaffold_8 1 189" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(4719921..4720513) /note="source:scaffold_5_CACTA_0615 1662 2253" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4720627..4721371 /note="source:scaffold_5_CACTA_0615 673 1433" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4721709..4721785 /note="source:INTACT477_F225_scaffold_9-int 277 352" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(4722563..4723046) /note="source:scaffold_7_CACTA_0779 12207 12704" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4723228..4725299) /note="source:scaffold_5_CACTA_0615 180 2253" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4725303..4725392 /note="source:scaffold_7_CACTA_0779 12734 12826" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4725622..4725692 /note="source:scaffold_7_CACTA_0779 12754 12826" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4726837..4727047) /note="source:scaffold_1_CACTA_0032 2335 2543" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4729124..4729347) /note="source:INTACT383F_F354_scaffold_3-int 866 1102" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 4729187..4729574 /note="source:scaffold_4_CACTA_0506 6774 7361" /mobile_element_type="transposon:TIR/CACTA" gene 4732313..4734440 /locus_tag="TCM_022450" /note="dbxref CacaoGD:Thecc1EG022450" mRNA 4732313..4734440 /locus_tag="TCM_022450" /product="D-mannose binding lectin protein with Apple-like carbohydrate-binding domain, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033786001" /inference="similar to AA sequence:Phytozome:GSVIVT01033786001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2763t1" CDS 4732378..4733889 /locus_tag="TCM_022450" /codon_start=1 /product="D-mannose binding lectin protein with Apple-like carbohydrate-binding domain, putative" /protein_id="EOY08126.1" /db_xref="Phytozome:GSVIVT01033786001" /db_xref="TAIR:AT5G03700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZR8" /translation="MERPLNLVARPLSTKFLSILIIPFLYTLTWPFIDAAATQELLKG FEATPNPSISSFQSLLDDSSGKFSFGFLRVNSTQLALAVLHVPSNEPLWLANATTLAR WSDHTKVFFNGSLVISDSLTRVFWSTETQGDKLVLLNNSNLQIQKSLDNSNDDSTVLW QSFDSPKDTLVETQNFTSTMSLISSNGLYSMRLGSDFIGLYAKFDLYSDQIYWKHKAL QAKAQIIEGNGPIHIRVEPDGWLGMYQNGTTPVDIESFNSFQRHLDGLLMVRLEPDGN LKAYYWTGSSWDLDYQAIRDTCELPRPCGSYGLCTPGSGCSCLDNNTEFSAGECSGPG SYFNDLCTDPNTLSNIKVLRREGVEAPFKELTRYEAMSSLEECEDSCERNCSCYGAVY NNASGFCYILDYPIQTLLGVGDDSKVGYFKMMEGARKKKVDAGLRVGIGLLGGAIACL IGAVGFGGYKIWRSRRGVNRMLEEEAGGVISGPYKDLGSASFRSIEMCSGSSR" mobile_element 4735617..4741868 /note="source:INTACT784_F331_scaffold_5-int 1 6252" /mobile_element_type="retrotransposon:LTR/Copia" gene 4747532..4749442 /locus_tag="TCM_022452" /note="dbxref CacaoGD:Thecc1EG022452" mRNA join(4747532..4748671,4749341..4749442) /locus_tag="TCM_022452" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Sb06g015315.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041499t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s15470.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc898t2" CDS join(4747780..4748671,4749341..4749345) /locus_tag="TCM_022452" /note="paralog of Thecc1EG041499t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08127.1" /db_xref="Phytozome:POPTR_0005s15470.1" /db_xref="TAIR:AT2G27770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N247" /translation="MRSIASCYSEHAIKVSDSYCSGPSTQAYLSPNLAPSTPNAITCI YKAKLSSQRNLLITLTWCNNLIGQGLIINVDESLSTPSKFKSNSHQLRKNKGSKTFKS CNSEIEVFWDVSGAQYINGPEPSTRFSVIVLVDSELCLLLGDMNEELQIEKIQSGQPA ANFSLVSRSENFSGSTVYSTKAQFCDTGLAHDILIKCSGEEEGWRNPVLSVCIDQKKI FQVKRLRWNFRGNQIIFLDGLLVDMMWDLHDWLFKQTSGYAVFMFRTRSGLDSRLWLE EKGSLEQKEKERAEFSLLICAY" mobile_element complement(4750986..4751108) /note="source:CACAO_PIF_E54_scaffold_3 9004 9125" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(4752707..4758150) /note="source:INTACT178_F162_scaffold_5-int 3 5445" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4758151..4758420 /note="source:scaffold_5_CACTA_0614 2220 2480" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4758641..4758740 /note="source:scaffold_5_CACTA_0614 2487 2583" /mobile_element_type="transposon:TIR/CACTA" gene 4762496..4765035 /locus_tag="TCM_022455" /note="dbxref CacaoGD:Thecc1EG022455" mRNA join(4762496..4763036,4763241..4763380,4763477..4763704, 4763795..4764828) /locus_tag="TCM_022455" /product="Aldolase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29092.m000460" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030571t1" /inference="similar to AA sequence:ricco:29092.m000460" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13712t1" mRNA join(4762514..4762690,4763477..4763704,4763795..4765035) /locus_tag="TCM_022455" /product="Aldolase superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29092.m000460" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030571t1" /inference="similar to AA sequence:Phytozome:POPTR_0018s09730.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.43 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3331t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13712t1" CDS join(4762663..4762690,4763477..4763704,4763795..4764615) /locus_tag="TCM_022455" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG030571t1" /codon_start=1 /product="Aldolase superfamily protein isoform 2" /protein_id="EOY08129.1" /db_xref="Phytozome:POPTR_0018s09730.1" /db_xref="TAIR:AT2G36460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P04075" /translation="MSCFISKYAEELAKNAAYIGTPGKGILAADESTGTIGKRLSSIN VENVEDNRRALRELLFTTPGALQYLSGVILFEETLYQKASSGKPFVEILKEGGVLPGI KVDKGTVELNGTNGETFTQGLDGLAQRCQKYYEAGARFAKWRAVLKIAVNEPTELAIQ ENANGLAMYAAICQQCGLVPIVEPEILVDGPHDIKKCAEVTERVLAACYKALNDHHVM LEGTLLKPNMVTPGSESPKVAPEVIAEYTVRALQRTVPAAVPAIVFLSGGQSEEEATL NLNAMNKLKTKKPWSLSFSFGRALQQSTLKAWAGKEENVKKAQAALLVRCKANSEATL GTYKGDAQLGEGAAESLHVKDYKY" CDS join(4763296..4763380,4763477..4763704,4763795..4764615) /locus_tag="TCM_022455" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29092.m000460; paralog of Thecc1EG030571t1" /codon_start=1 /product="Aldolase superfamily protein isoform 1" /protein_id="EOY08128.1" /db_xref="TAIR:AT2G36460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P04075" /translation="MKLIKIIICLVAFLFRSEITEPYPFTLEEELAKNAAYIGTPGKG ILAADESTGTIGKRLSSINVENVEDNRRALRELLFTTPGALQYLSGVILFEETLYQKA SSGKPFVEILKEGGVLPGIKVDKGTVELNGTNGETFTQGLDGLAQRCQKYYEAGARFA KWRAVLKIAVNEPTELAIQENANGLAMYAAICQQCGLVPIVEPEILVDGPHDIKKCAE VTERVLAACYKALNDHHVMLEGTLLKPNMVTPGSESPKVAPEVIAEYTVRALQRTVPA AVPAIVFLSGGQSEEEATLNLNAMNKLKTKKPWSLSFSFGRALQQSTLKAWAGKEENV KKAQAALLVRCKANSEATLGTYKGDAQLGEGAAESLHVKDYKY" gene complement(4771173..4774626) /locus_tag="TCM_022457" /note="dbxref CacaoGD:Thecc1EG022457" mRNA complement(join(4771173..4773074,4774126..4774626)) /locus_tag="TCM_022457" /product="Duplicated homeodomain-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033792001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044087t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033792001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1306t1" CDS complement(join(4771835..4773074,4774126..4774610)) /locus_tag="TCM_022457" /note="paralog of Thecc1EG044087t1" /codon_start=1 /product="Duplicated homeodomain-like superfamily protein, putative" /protein_id="EOY08130.1" /db_xref="Phytozome:GSVIVT01033792001" /db_xref="TAIR:AT5G03680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6Q6T0" /translation="MEMEDHHHHQYAMADLRQLMNGRPTHFQGIPQAPELFSSGHRNL PPPQPHHHQHHPHTFEMMQMVGRQVGHELMPRGLHHDFPADSTANNATPTAAAVAVTS ASTPSASCGFDGEATAFGGDGGTGRWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEV SRIMSEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGETS NSVSGPETQLIGNNFRFHGTPNSNTQANQDVYHSQKLCDSLSLSNSSDFDTSSSDDND LSTAGPMENDSSEKRKKKRGSRSWKAKIKEFIDSQMRKLMERQEAWLEKLTKTLEQKE QERVLREEEWRKEEAARIDREHKFWAKERAWIEARDAALMEALQNLTGKQLKVTSPEE LMATEMQNHSENQNENGSETINNTVKADGWQESEISRLIQLRTSMESRFHQGACSEEI LWEEIAAKMACLGFDRSALMCKEKWNSISAYLMKTKESNKKRKENSRGCGYYQNNEAL YSQGRAYCEINEQGSETVRLQANDGSSPSNSNVGNAVNDSCFRFLMADGENLWENYGL KLSKGENQ" mobile_element complement(4776195..4776908) /note="source:INTACT477_F225_scaffold_9-int 4147 4867" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(4776887..4778217) /note="source:INTACT579_F10_scaffold_3-int 4420 5756" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(4777956..4778445) /note="source:INTACT556_F252_scaffold_2-int 1561 2045" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4778522..4779063 /note="source:CACAO_M_E12044_F76_scaffold_2 5693 6218" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4779332..4783947 /note="source:INTACT642F_F365_scaffold_5-int 1231 7605" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4783937..4784026) /note="source:INTACT477_F225_scaffold_9-int 6783 6872" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(4784127..4784536) /note="source:CACAO_M_E801_F96_scaffold_1 1 411" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4784537..4789851) /note="source:INTACT556_F252_scaffold_2-int 5469 10784" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4789843..4793416 /note="source:INTACT1391F_F387_scaffold_8-int 9241 12759" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4792319..4793625) /note="source:INTACT477_F225_scaffold_9-int 4420 5744" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(4793381..4793854) /note="source:INTACT556_F252_scaffold_2-int 1561 2030" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4793931..4794045) /note="source:INTACT345_F202_scaffold_1-int 12956 13059" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4793967..4794454 /note="source:CACAO_M_E12044_F76_scaffold_2 5706 6218" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4794719..4795144 /note="source:INTACT554_F250_scaffold_7-int 17380 17741" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4794799..4795193) /note="source:INTACT556_F252_scaffold_2-int 22 366" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4795247..4799984) /note="source:CACAO_M_S_E89247_F225_scaffold_8 1 4150" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4803590..4803745 /note="source:CACAO_M_S_E146911_F98_scaffold_15 260 405" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4803682..4803767 /note="source:scaffold_1_CACTA_0011 6937 7020" /mobile_element_type="transposon:TIR/CACTA" gene 4808679..4820963 /locus_tag="TCM_022462" /note="dbxref CacaoGD:Thecc1EG022462" mRNA join(4808679..4809083,4820217..4820963) /locus_tag="TCM_022462" /product="Integrase-type DNA-binding superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033793001" /inference="similar to AA sequence:ricco:29092.m000462" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.26 coverage" CDS join(4809013..4809083,4820217..4820928) /locus_tag="TCM_022462" /note="dbxref ricco:29092.m000462" /codon_start=1 /product="Integrase-type DNA-binding superfamily protein" /protein_id="EOY08131.1" /db_xref="TAIR:AT2G36450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PL87" /translation="MTFILVTVKYISYMTSNETIYLHIKKLTPKFPSTINGFSRPQLQ TPNLRAISLYQIQVTMHYSKSNKSSRANTSSSSGGSASGAGASAATGRHPVYRGVRRR TSGKWVSEIREPRKPNRIWLGTFPTAEMAAIAYDVAALALKGQDAELNFPNSAASLPV PASTSPRDIQAAATSAAAALGAANDALFGNEDNEARNSPVGPDKPTTVDEFVDEDLIF DMPNVLVNMAEGMLLSPPRLDIAPAPAPADDAGDAENLWKFP" mobile_element complement(4809407..4809451) /note="source:CACAO_M_S_E31635_F14_scaffold_3 3177 3224" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4826474..4826659 /note="source:scaffold_9_CACTA_0929 4156 4319" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4826660..4828519 /note="source:CACAO_M_S_E52071_F4_scaffold_5 1 1860" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4831876..4841756 /note="source:INTACT630_F9_scaffold_5-int 1 9881" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4850467..4850533 /note="source:CACAO_M_S_E66461_F76_scaffold_5 419 481" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4856632..4856688 /note="source:CACAO_M_E42343_F106_scaffold_5 6708 6763" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4861221..4861484 /note="source:scaffold_3_CACTA_0384 10332 10595" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4861485..4862083 /note="source:INTACT280_F60_scaffold_5-int 14807 15213" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4862083..4864234 /note="source:scaffold_5_CACTA_0585 7373 9518" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4864129..4864262) /note="source:INTACT280_F60_scaffold_5-int 8449 8577" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(4875053..4876059) /locus_tag="TCM_022468" /note="dbxref CacaoGD:Thecc1EG022468" mRNA complement(4875053..4876059) /locus_tag="TCM_022468" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.66 coverage" CDS complement(4875584..4875826) /locus_tag="TCM_022468" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08132.1" /translation="MRNHPNSGQTNFESASNLRSQVALNRINKARSGGQIGLNGGFNA SKSGFQGEVEGSTPKLERFKIRTVETGQVVKDEEHK" gene complement(4881048..4882005) /locus_tag="TCM_022470" /note="dbxref CacaoGD:Thecc1EG022470" mRNA complement(4881048..4882005) /locus_tag="TCM_022470" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.36 coverage" mobile_element 4881050..4881115 /note="source:CACAO_M_S_E90022_F9_scaffold_8 3086 3153" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4881070..4881120) /note="source:CACAO_M_S_E90022_F9_scaffold_8 3095 3145" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(4881312..4881842) /locus_tag="TCM_022470" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08133.1" /translation="MSQFPQPTRPVHSSDLSPVQIPQASQNVNMDEFYPGSSFPEEGF QFYFPDNLMPQPTAATEEEEKQAIDELIRVISEWYEKLPERIRSQINLDKFNVSSNNR TQQGFKVESTTIHDRNEQLEEFKHKLARFKIMSVDINTSRGVNGPGEEIRQKLDRFKI RTVQIGEVTQEEEVKR" gene 4885005..4885848 /locus_tag="TCM_022471" /note="dbxref CacaoGD:Thecc1EG022471" mRNA join(4885005..4885283,4885826..4885848) /locus_tag="TCM_022471" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2215t1_C1" CDS 4885014..4885187 /locus_tag="TCM_022471" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08134.1" /translation="MRHSVPISNPMEQCCFTEHLAFVTRFYNFSELISLSCILQRVSP QVLETSKFLGILE" gene complement(4885093..4889179) /locus_tag="TCM_022472" /note="dbxref CacaoGD:Thecc1EG022472" mRNA complement(join(4885093..4887046,4889143..4889179)) /locus_tag="TCM_022472" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29791.m000531" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039778t1" /inference="similar to AA sequence:Phytozome:POPTR_0007s13970.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2215t1_C2" CDS complement(4885504..4886919) /locus_tag="TCM_022472" /note="paralog of Thecc1EG039778t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08135.1" /db_xref="Phytozome:POPTR_0007s13970.1" /db_xref="TAIR:AT2G36430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MXI0" /translation="MDSPDSYQNSREIGNSFKSIITRMRSSAADGETNYVINIMEVNE DRLASMHQKISEPPRLLTMAAGRSSCCIFRVPESLIDVNGKAYQPRIVSIGPYHRGKP QLRMIEEHKWRYLGFLLRRMKEKGLGLEDFFKAIQPLEMKARECYSETIQLSSDEFLE MIVLDGCFIIELFRKVGNLVPFEPDDPIVSMLWILPFFYRDFLRVENQIPFFLLQCLF DLTKMPGEKSGRSLSKLALEFFNNAVQRPDEVIAKYHDLKCHHLLDLVRASFIPSDED HEQREVSAPTLMIHSVSKLRRAGIKLNPRKADSFLVIKFRRGVIEMPPITIDDFMSSL LLNCVAFEQCHRSRIKHFTDYATLLDCLVNTYKDVEYLCQSNVFENYFGTEGEVARFI NDMGKETAFDINNCYLSKLFSDVHQYYRNSWHVQWASFKHTYFQTPWSFISALAALIL LLLTIAQTFFTIYSVYKPDKS" mobile_element complement(4887108..4888221) /note="source:CACAO_hAT_E2876_scaffold_6 1 1120" /mobile_element_type="transposon:TIR/hAT" mobile_element 4890906..4892272 /note="source:CACAO_M_S_E19555_F4_scaffold_3 1 1363" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4893693..4895255 /note="source:CACAO_M_S_E99244_F4_scaffold_9 1356 2933" /mobile_element_type="retrotransposon:LTR/Copia" gene 4894024..4908472 /locus_tag="TCM_022473" /note="dbxref CacaoGD:Thecc1EG022473" mRNA join(4894024..4894083,4905892..4905951,4906879..4906972, 4907252..4907337,4907476..4908472) /locus_tag="TCM_022473" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.48 coverage" CDS join(4894027..4894083,4905892..4905951,4906879..4906972, 4907252..4907337,4907476..4907544) /locus_tag="TCM_022473" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08136.1" /translation="MILFFFDRLKYHHGDPWVEKRMTWQSFDMPHGSLLTCHMGTVID NGETKEDGQFMEDFESDDDEIEQDSEGFRSDEASIDLVATWIRLQGMPLKFYDKKESD KLRRVEDDMFPLCQVWAWS" mobile_element complement(4895184..4895262) /note="source:CACAO_M_E36574_F4_scaffold_5 5723 5801" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4895263..4896390 /note="source:CACAO_Again_on_E120_scaffold_5 1 1128" /mobile_element_type="transposon:TIR/hAT" mobile_element 4896382..4897464 /note="source:CACAO_M_E14537_F4_scaffold_3 2773 3820" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(4897378..4899371) /note="source:CACAO_M_S_E51722_F106_scaffold_4 2711 4639" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4899207..4899827 /note="source:scaffold_2_CACTA_0276 5421 6021" /mobile_element_type="transposon:TIR/CACTA" mobile_element 4899848..4900963 /note="source:scaffold_2_CACTA_0276 8894 10016" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4900964..4902655) /note="source:CACAO_M_E35115_F328_scaffold_5 1511 3208" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4903933..4904231 /note="source:scaffold_2_CACTA_0276 10011 10312" /mobile_element_type="transposon:TIR/CACTA" gene 4908520..4920174 /locus_tag="TCM_022474" /note="dbxref CacaoGD:Thecc1EG022474" mRNA join(4908520..4908689,4919472..4919820,4920140..4920174) /locus_tag="TCM_022474" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027790t1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete" mobile_element 4910925..4912332 /note="source:INTACT713_F309_scaffold_9-int 1026 2460" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(4919551..4919820,4920140..4920151) /locus_tag="TCM_022474" /note="paralog of Thecc1EG027790t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08137.1" /translation="MREVRSDLLFVGLMELVEDVVGVNSQNDKIKLHELISTPGELSQ PIIKDDEDVVLFLLKQRNVPAVYIIIKERHTNVRANVMLLEEAVNMDSK" mobile_element 4919848..4921290 /note="source:CACAO_M_S_E52080_F9_scaffold_5 1 1443" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(4920115..4930759) /locus_tag="TCM_022475" /note="dbxref CacaoGD:Thecc1EG022475" mRNA complement(join(4920115..4920143,4923058..4923453, 4924248..4924316,4924397..4924463,4924994..4925175, 4930207..4930759)) /locus_tag="TCM_022475" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete" CDS complement(join(4923091..4923453,4924248..4924316, 4924397..4924463,4924994..4925169)) /locus_tag="TCM_022475" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08138.1" /translation="MVRRINELESQEHELWFAIRKTNVRFFKQVFCLITGLKFGPLPD IFLRSYEVVLGGIHTWKWNQKSNEFNKTMQMLEACQKLWAHKMLEPKLDEAMREYWSN IVDEEAPCDWTHTNDGERQADDCDHHNDVDAEGNVVPTADSHVNEVDVREVENNEAFL EDVTAIEMLQVVLYILDAWSALSPHSIDLDEKTLMWQSKGSTSPPLSPVSFYVQQRKS LLINLA" gene 4930229..4930737 /locus_tag="TCM_022476" /note="dbxref CacaoGD:Thecc1EG022476" mRNA 4930229..4930737 /locus_tag="TCM_022476" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.20 coverage" CDS 4930347..4930589 /locus_tag="TCM_022476" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08139.1" /translation="MWIMSWNVCVWGNCIKACTIRKLNQIGKVSSLCSKRKKLDIIMG GSSKNCNTLDEVDWLAAPSMGRFGRLFLCYCEGRFG" gene 4941024..4942666 /locus_tag="TCM_022478" /note="dbxref CacaoGD:Thecc1EG022478" mRNA join(4941024..4941200,4941410..4941461,4942313..4942666) /locus_tag="TCM_022478" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.39 coverage" CDS join(4941110..4941200,4941410..4941461,4942313..4942568) /locus_tag="TCM_022478" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08140.1" /translation="MDSAIEIWNTLEQSFAHLDDTIICNLQYTLDFIDFHVGKRVVLI KIHSLIGHPLTSPLTLNLSSLFNGFTHSNPFLILLSLFVASFSSSILMVFRFLNGPND TFSTVRSQIILMDPKPDLDKVHSLVLRKEA" mobile_element 4943231..4951784 /note="source:INTACT9_F4_scaffold_5-int 1 8554" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4954265..4955838 /note="source:INTACT365_F17_scaffold_9-int 11 1592" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4955840..4957261 /note="source:CACAO_M_E34442_F85_scaffold_5 1 1422" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(4956147..4964352) /locus_tag="TCM_022480" /note="dbxref CacaoGD:Thecc1EG022480" mRNA complement(join(4956147..4956457,4956517..4957089, 4961784..4962293,4962743..4963368,4964237..4964352)) /locus_tag="TCM_022480" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035338t1" /note="quality class is medium-utrpoor, express is weak, homology is paralog strong, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.15 coverage" mobile_element 4958280..4959131 /note="source:CACAO_M_E34442_F85_scaffold_5 1423 2274" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4959132..4959241) /note="source:INTACT528_F17_scaffold_6-int 6168 6280" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4959240..4960364) /note="source:CACAO_M_S_E87920_F323_scaffold_7 5283 6405" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4959361..4964854 /note="source:CACAO_M_E49759_F82_scaffold_7 3242 8716" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(4961978..4962293,4962743..4962813)) /locus_tag="TCM_022480" /note="paralog of Thecc1EG035338t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08141.1" /translation="MFVEASRRLPRARWGVPGRDNLDWGKLRIAEGGIRSRKSVTVVR HFPPGCGRNVRGQPENDKEKVTVASKPLRKVSGVRYFSLGCGRNAAPVSDEEYRRIQQ AWIEEQRKKKSQKEENQEEDLQEDSE" mobile_element 4965598..4966533 /note="source:INTACT365_F17_scaffold_9-int 2928 3832" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4965831..4968821) /note="source:INTACT475_F17_scaffold_8-int 1 5951" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(4972124..4973309) /locus_tag="TCM_022481" /note="dbxref CacaoGD:Thecc1EG022481" mRNA complement(4972124..4973309) /locus_tag="TCM_022481" /product="Dehydration-responsive element-binding protein 1B, putative" /inference="alignment:exonerate- protein:2:ricco:29092.m000466" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041493t1" /inference="similar to AA sequence:ricco:29092.m000466" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2805t1" CDS complement(4972545..4973225) /locus_tag="TCM_022481" /note="dbxref ricco:29092.m000466; paralog of Thecc1EG041493t1" /codon_start=1 /product="Dehydration-responsive element-binding protein 1B, putative" /protein_id="EOY08142.1" /db_xref="TAIR:AT4G25490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SRI0" /translation="MEEQSVLSSKSHITPCSSSQPELGSSSGQVEAKTQKRKAGRKKF QETRHPVYKGVRRRNGKWVSELREPIKKSRIWLGTFSSPGMAARAYDAAALALKGDSA SLNFPESANALPRARSSSIRDIQYAAMEAAEAFGDIAKTPSPSPSLSSSSSLPSPPLP SLENSSENVQGSSEKLFLDEEEVFNMPGILDSMAEGLILTPPAMQKGYYNWDDDVDDY MEFTLWGD" mobile_element complement(4976316..4978975) /note="source:INTACT561_F253_scaffold_5-int 1803 4457" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(4978972..4979885) /note="source:CACAO_M_E58957_F253_scaffold_9 1856 2782" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(4981715..4982139) /note="source:CACAO_M_E49205_F4_scaffold_6 2146 2577" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4982139..4982221 /note="source:CACAO_M_S_E50888_F253_scaffold_4 3781 3863" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 4985472..4986599 /note="source:CACAO_M_E34444_F17_scaffold_5 1 1126" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 4986700..4987072 /note="source:CACAO_M_E34444_F17_scaffold_5 1148 1520" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4991054..4991125) /note="source:scaffold_8_CACTA_0858 14212 14283" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(4991863..4992022) /note="source:CACAO_M_E23991_F4_scaffold_4 2422 2577" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(4992262..5002716) /locus_tag="TCM_022483" /note="dbxref CacaoGD:Thecc1EG022483" mRNA complement(join(4992262..4993067,4993190..4993277, 4993409..4993677,5002541..5002716)) /locus_tag="TCM_022483" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(join(4992733..4993067,4993190..4993277, 4993409..4993677,5002541..5002691)) /locus_tag="TCM_022483" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08143.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9P621" /translation="MILDGFGIGLGNGKKSSFWDEEWIEGHILMHFLSRIYALAVKKK GKIAHFAREFEDKLIWKGSIDGSYSSKCFCRVALHNNTTVVGYWRQIWSRLTPFKVEI LCWQLVKGRLAVTDSIARRGTISETFATCLLCRKEREILFDDGLIWRIAWYSIIWTIW ISRNDVTFKGSNPIANRKTKLQLEWSKLEAGWLKFNIDGASKGKPDESGVGGIWWDEN GSSIILFLKLVSISDSNKAELFVVKEMVVLFAALEWSSSLSLLLECDSQNVIKWIQNT LDVP" mobile_element 4994548..4996067 /note="source:CACAO_M_E34444_F17_scaffold_5 1 1520" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(4999962..5000033) /note="source:scaffold_8_CACTA_0858 14212 14283" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5000616..5000776) /note="source:CACAO_M_E23991_F4_scaffold_4 2422 2577" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5002961..5008022 /note="source:CACAO_M_E34445_F25_scaffold_5 1 5062" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(5013643..5017879) /locus_tag="TCM_022485" /note="dbxref CacaoGD:Thecc1EG022485" mRNA complement(join(5013643..5014685,5015908..5016100, 5016765..5017879)) /locus_tag="TCM_022485" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29092.m000467" /inference="similar to AA sequence:ricco:29092.m000467" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc471t3" CDS complement(join(5014144..5014685,5015908..5016100, 5016765..5017643)) /locus_tag="TCM_022485" /note="dbxref ricco:29092.m000467" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08144.1" /db_xref="TAIR:AT5G03670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HKI4" /translation="MMAQKHLHELLQEDQEPFLLKNYIADRRCQLKNPSPKTHLQIKK RKPISQNSNFPSNFCKNACFFSFQDSPDPRKSPLLEFPSPAKSPCKSPNAIFLHIPAR TAALLLEAALRIQKQSSSKTKPQSKNNGRSFSLFGSILKRLTHRNRNRKNEIANDGAK VSVKDILRWDSTVGKSNQNQKKMSSAMEEKSGCEMGFSSSYNGRPSSAVWSESNEEKS LDRDLDTSSSCSQSEDFEEIFMSKDVLENNAACASCDKHFCESPFHFVLQRSSSFGHR TPLFSSPATSPSRDQKQDKEKYEVESLKKLQVKEEEEEKEQCSPVSVLDPPFEDDDDR HVDDDDDDENDGFDLECSYAIVQKAKQQLLHKLRRFEKLAELDPIELEKRMLEQEQDD DNDDNGICDLEEEEEIEHESASSDSEMNVDAFVQEVLKSSFHSLRHSPEGMKRLVSDL VAEEETEQNCYIDREVVVRMVCKRLESWKEVESNTIDMMVEQDFRRELDGWKNSQGQI RETALEVEYAIFGLLMEELSKELVGLTGA" mobile_element 5026606..5026689 /note="source:INTACT160_F4_scaffold_7-int 13483 13562" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(5033221..5034970) /locus_tag="TCM_022486" /note="dbxref CacaoGD:Thecc1EG022486" mRNA complement(join(5033221..5033433,5033557..5033637, 5033776..5033886,5034548..5034970)) /locus_tag="TCM_022486" /product="Family of Uncharacterized protein function isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g37700.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041489t1" /inference="similar to AA sequence:Phytozome:Glyma19g37700.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13562t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13562t2" CDS complement(join(5033359..5033433,5033557..5033637, 5033776..5033886,5034548..5034796)) /locus_tag="TCM_022486" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG041489t1" /codon_start=1 /product="Family of Uncharacterized protein function isoform 1" /protein_id="EOY08145.1" /db_xref="Phytozome:Glyma19g37700.2" /db_xref="TAIR:AT3G09980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RXZ8" /translation="MMQTEQQQQQPQQQNQLMVQNSGSLSFSSHLSKEDEEISKSALS TFRAKEEEIERKKMEVREKVQLQLGRVEEETKRLAFIREELEALADPMRKDVALVRKK IDAVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMELVSESERLRMKKL EELSKNIDSIH" mRNA complement(join(<5033775..5033883,5034548..>5034851)) /locus_tag="TCM_022486" /product="Family of Uncharacterized protein function isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g37700.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041489t1" /inference="similar to AA sequence:Phytozome:Glyma19g37700.2" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is weak, protein is partial; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc2786t7; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13562t2" CDS complement(join(<5033776..5033883,5034548..>5034850)) /locus_tag="TCM_022486" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG041489t1" /codon_start=1 /product="Family of Uncharacterized protein function isoform 2" /protein_id="EOY08146.1" /db_xref="Phytozome:Glyma19g37700.2" /db_xref="TAIR:AT2G36410.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SJR4" /translation="NSRKKKGFLSVKKLELAKMMQTEQQQQQPQQQNQLMVQNSGSLS FSSHLSKEDEEISKSALSTFRAKEEEIERKKMEVREKVQLQLGRVEEETKRLAFIREL EALADPMRKDVALVRKKIDAVNKELKPLGHTCQKK" mobile_element 5036041..5036534 /note="source:scaffold_4_CACTA_0482 16801 17286" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5039810..5041666 /note="source:CACAO_M_E34447_F4_scaffold_5 1 1857" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5054043..5054411 /note="source:scaffold_9_CACTA_0937 5818 6171" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5054404..5054713 /note="source:scaffold_9_CACTA_0937 9652 9962" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5056313..5056431 /note="source:CACAO_M_E3884_F22_scaffold_1 13080 13210" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5057002..5059994 /note="source:CACAO_M_E4676_F9_scaffold_2 6793 9776" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5063534..5064377) /note="source:INTACT59_F126_scaffold_9-int 13559 14423" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5065190..5065464) /note="source:INTACT59_F126_scaffold_9-int 15003 15315" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5065267..5065528 /note="source:INTACT72F_F343_scaffold_2-int 59 312" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5065536..5079142) /note="source:INTACT59_F126_scaffold_9-int 648 14196" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5078939..5079497 /note="source:INTACT72F_F343_scaffold_2-int 49 614" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5079498..5079603) /note="source:INTACT1232F_F375_scaffold_6-int 9797 9929" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 5084000..5087261 /locus_tag="TCM_022490" /note="dbxref CacaoGD:Thecc1EG022490" mRNA join(5084000..5084657,5084863..5085051,5085533..5085896, 5086599..5087244) /locus_tag="TCM_022490" /product="Growth-regulating factor 3 isoform 1" /inference="alignment:exonerate- protein:2:ricco:27496.m000094" /inference="similar to AA sequence:Phytozome:GSVIVT01033800001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g06553t00001" mRNA join(5084414..5084657,5084863..5085051,5085521..5085896, 5086599..5087261) /locus_tag="TCM_022490" /product="Growth-regulating factor 3 isoform 2" /inference="alignment:exonerate- protein:2:ricco:27496.m000094" /inference="similar to AA sequence:Phytozome:GSVIVT01033800001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g06553t00001; inference alignment:Newbler:10:TSA:cgbaP2_g06553t00001" CDS join(5084438..5084657,5084863..5085051,5085521..5085896, 5086599..5087019) /locus_tag="TCM_022490" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Growth-regulating factor 3 isoform 2" /protein_id="EOY08148.1" /db_xref="Phytozome:GSVIVT01033800001" /db_xref="TAIR:AT2G36400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C0M9" /translation="MDLHLKQWRNQHESEQQPSAKIPKLLLDPHHQHQQQQQQHPSES SALPLFVPEPNSKISSNLSAVPDSTTRFPRMGSYFSLAQWQELELQALIYRYMLAGAT VPPELLQPIKKSLLHSPAYFLHHPLQHYSHYQPALLQSGYWGRAAMDPEPGRCRRTDG KKWRCSRDVVAGQKYCERHMHRGRNRSRKPVEMPTSSTTANNNATAAFGGASGAGVGA IGCGALKVTSPIPASPLAVVANGTNNFGLSGPSPPIDLLHLNHSSSESKNEHKGLFEA QNEVNNRSDGHILRPFFDDWPRSQQDPDNTGTSASPMSSATCLSISMPGNSSSDVSLK LSTGNVDQLGPRDSERNWAAGWATNQVASMGGPLAEALRSSTSNSSPTSVLQQLPRGS ASETSYVNT" CDS join(5084438..5084657,5084863..5085051,5085533..5085896, 5086599..5087019) /locus_tag="TCM_022490" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Growth-regulating factor 3 isoform 1" /protein_id="EOY08147.1" /db_xref="Phytozome:GSVIVT01033800001" /db_xref="TAIR:AT2G36400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C0M9" /translation="MDLHLKQWRNQHESEQQPSAKIPKLLLDPHHQHQQQQQQHPSES SALPLFVPEPNSKISSNLSAVPDSTTRFPRMGSYFSLAQWQELELQALIYRYMLAGAT VPPELLQPIKKSLLHSPAYFLHHPLQHYSHYQPAWYWGRAAMDPEPGRCRRTDGKKWR CSRDVVAGQKYCERHMHRGRNRSRKPVEMPTSSTTANNNATAAFGGASGAGVGAIGCG ALKVTSPIPASPLAVVANGTNNFGLSGPSPPIDLLHLNHSSSESKNEHKGLFEAQNEV NNRSDGHILRPFFDDWPRSQQDPDNTGTSASPMSSATCLSISMPGNSSSDVSLKLSTG NVDQLGPRDSERNWAAGWATNQVASMGGPLAEALRSSTSNSSPTSVLQQLPRGSASET SYVNT" gene complement(5085533..5101874) /locus_tag="TCM_022491" /note="dbxref CacaoGD:Thecc1EG022491" mRNA complement(join(5085533..5085896,5086599..5088064, 5088170..5088244,5088402..5088557,5089322..5089399, 5089645..5089745,5089858..5090005,5090451..5090595, 5090714..5090817,5091718..5091846,5092103..5092213, 5092320..5092449,5093113..5093232,5093408..5093529, 5094949..5095032,5095542..5095658,5096943..5097023, 5097882..5097941,5098058..5098100,5098764..5098862, 5099746..5100002,5100418..5100575,5101570..5101874)) /locus_tag="TCM_022491" /product="Starch branching enzyme 2.1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g35020.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034384t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033801001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc438t38_C1; alternateUTRof:Thecc1EG022491t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2888t3" mRNA complement(join(5086597..5088064,5088170..5088244, 5088402..5088557,5089322..5089399,5089645..5089745, 5089858..5090005,5090451..5090595,5090714..5090817, 5091718..5091846,5092103..5092213,5092320..5092449, 5093113..5093232,5093408..5093529,5094949..5095032, 5095542..5095658,5096943..5097023,5097882..5097941, 5098058..5098100,5098764..5098862,5099746..5100002, 5100418..5100575,5101570..5101722)) /locus_tag="TCM_022491" /product="Starch branching enzyme 2.1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g35020.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034384t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033801001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2888t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2888t3" mRNA complement(join(5086597..5088064,5088170..5088248, 5088402..5088557,5089322..5089399,5089645..5089745, 5089858..5090005,5090451..5090595,5090714..5090817, 5091718..5091846,5092103..5092213,5092320..5092449, 5093113..5093232,5093408..5093529,5094949..5095032, 5095542..5095658,5096943..5097023,5097882..5097941, 5098058..5098100,5098764..5098862,5099746..5100002, 5100418..5100575,5101570..5101722)) /locus_tag="TCM_022491" /product="Starch branching enzyme 2.2 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g35020.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034384t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033801001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2888t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2888t3" CDS complement(join(5087864..5088064,5088170..5088244, 5088402..5088557,5089322..5089399,5089645..5089745, 5089858..5090005,5090451..5090595,5090714..5090817, 5091718..5091846,5092103..5092213,5092320..5092449, 5093113..5093232,5093408..5093529,5094949..5095032, 5095542..5095658,5096943..5097023,5097882..5097941, 5098058..5098100,5098764..5098862,5099746..5100002, 5100418..5100575,5101570..5101699)) /locus_tag="TCM_022491" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG034384t1" /codon_start=1 /product="Starch branching enzyme 2.1 isoform 1" /protein_id="EOY08149.1" /db_xref="Phytozome:GSVIVT01033801001" /db_xref="TAIR:AT5G03650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q08047" /translation="MVYGVSAIRLSCVPSVYRFSQSSFNGARRSSSFSLLLKKDQFSR KIFAQKSSYDSDSSSLTVTASEKVLAPGGQGDGSSSLTGQLESPSTISDDPQVTHDVD GNEMEDDEKVEVEEQESVPSALANNDEEACNEEPSVPLHMKVSTEKSEAKPRSIPPPG AGQKIYEIDPTLLGFREHLDYRYAQYKRMREAIDKYEGGLEVFSRGYEKLGFTRSETG ITYREWAPGAKSAALIGDFNNWNPNADIMSQNEFGVWEIFLPNNADGSPPIPHGSRVK IHMETPSGIKDSIPAWIKFSVQAPGEIPYSGIYYDPQEEEKYVFKHPQPKRPKSLRIY ESHVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAIQEHSYYASFGYHVTNFFA PSSRFGTPDDLKSLIDRAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHLGSR GHHWMWDSRLFNYESWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLEVAFT GNYNEYFGFATDVDAVVYLMLVNDMIHGLYPEAVTIGEDVSGMPTFCLPVQDGGVGFD YRLQMAIADKWIEILKKRDEDWKMGNIIHTLTNRRWLEKCVAYAESHDQALVGDKTLA FWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLITMGLGGEGYLNFMGNEFGHPEWI DFPRGEQHLPNGSVIPGNNCSYDKCRRRFDLGDADYLRYRGMQEFDQAMQHLEAKYGF MTSEHQYISRKNEGDRMIVFERGNLVFVFNFHWINSYFDYRVGCLKPGKYKIVLDSDD PLFGGFNRLDHNAEYFSTEGWYDDRPRSFLVYAPSRTAVVYALVEDEPEAVGKPEPVQ KIETVEEEAEAVEELEPRKESEPLEG" CDS complement(join(5087864..5088064,5088170..5088244, 5088402..5088557,5089322..5089399,5089645..5089745, 5089858..5090005,5090451..5090595,5090714..5090817, 5091718..5091846,5092103..5092213,5092320..5092449, 5093113..5093232,5093408..5093529,5094949..5095032, 5095542..5095658,5096943..5097023,5097882..5097941, 5098058..5098100,5098764..5098862,5099746..5100002, 5100418..5100575,5101570..5101699)) /locus_tag="TCM_022491" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG034384t1" /codon_start=1 /product="Starch branching enzyme 2.1 isoform 1" /protein_id="EOY08150.1" /db_xref="Phytozome:GSVIVT01033801001" /db_xref="TAIR:AT5G03650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q08047" /translation="MVYGVSAIRLSCVPSVYRFSQSSFNGARRSSSFSLLLKKDQFSR KIFAQKSSYDSDSSSLTVTASEKVLAPGGQGDGSSSLTGQLESPSTISDDPQVTHDVD GNEMEDDEKVEVEEQESVPSALANNDEEACNEEPSVPLHMKVSTEKSEAKPRSIPPPG AGQKIYEIDPTLLGFREHLDYRYAQYKRMREAIDKYEGGLEVFSRGYEKLGFTRSETG ITYREWAPGAKSAALIGDFNNWNPNADIMSQNEFGVWEIFLPNNADGSPPIPHGSRVK IHMETPSGIKDSIPAWIKFSVQAPGEIPYSGIYYDPQEEEKYVFKHPQPKRPKSLRIY ESHVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAIQEHSYYASFGYHVTNFFA PSSRFGTPDDLKSLIDRAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHLGSR GHHWMWDSRLFNYESWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLEVAFT GNYNEYFGFATDVDAVVYLMLVNDMIHGLYPEAVTIGEDVSGMPTFCLPVQDGGVGFD YRLQMAIADKWIEILKKRDEDWKMGNIIHTLTNRRWLEKCVAYAESHDQALVGDKTLA FWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLITMGLGGEGYLNFMGNEFGHPEWI DFPRGEQHLPNGSVIPGNNCSYDKCRRRFDLGDADYLRYRGMQEFDQAMQHLEAKYGF MTSEHQYISRKNEGDRMIVFERGNLVFVFNFHWINSYFDYRVGCLKPGKYKIVLDSDD PLFGGFNRLDHNAEYFSTEGWYDDRPRSFLVYAPSRTAVVYALVEDEPEAVGKPEPVQ KIETVEEEAEAVEELEPRKESEPLEG" CDS complement(join(5088225..5088248,5088402..5088557, 5089322..5089399,5089645..5089745,5089858..5090005, 5090451..5090595,5090714..5090817,5091718..5091846, 5092103..5092213,5092320..5092449,5093113..5093232, 5093408..5093529,5094949..5095032,5095542..5095658, 5096943..5097023,5097882..5097941,5098058..5098100, 5098764..5098862,5099746..5100002,5100418..5100575, 5101570..5101699)) /locus_tag="TCM_022491" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG034384t1" /codon_start=1 /product="Starch branching enzyme 2.2 isoform 3" /protein_id="EOY08151.1" /db_xref="Phytozome:GSVIVT01033801001" /db_xref="TAIR:AT5G03650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q08047" /translation="MVYGVSAIRLSCVPSVYRFSQSSFNGARRSSSFSLLLKKDQFSR KIFAQKSSYDSDSSSLTVTASEKVLAPGGQGDGSSSLTGQLESPSTISDDPQVTHDVD GNEMEDDEKVEVEEQESVPSALANNDEEACNEEPSVPLHMKVSTEKSEAKPRSIPPPG AGQKIYEIDPTLLGFREHLDYRYAQYKRMREAIDKYEGGLEVFSRGYEKLGFTRSETG ITYREWAPGAKSAALIGDFNNWNPNADIMSQNEFGVWEIFLPNNADGSPPIPHGSRVK IHMETPSGIKDSIPAWIKFSVQAPGEIPYSGIYYDPQEEEKYVFKHPQPKRPKSLRIY ESHVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAIQEHSYYASFGYHVTNFFA PSSRFGTPDDLKSLIDRAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHLGSR GHHWMWDSRLFNYESWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLEVAFT GNYNEYFGFATDVDAVVYLMLVNDMIHGLYPEAVTIGEDVSGMPTFCLPVQDGGVGFD YRLQMAIADKWIEILKKRDEDWKMGNIIHTLTNRRWLEKCVAYAESHDQALVGDKTLA FWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLITMGLGGEGYLNFMGNEFGHPEWI DFPRGEQHLPNGSVIPGNNCSYDKCRRRFDLGDADYLRYRGMQEFDQAMQHLEAKYGF MTSEHQYISRKNEGDRMIVFERGNLVFVFNFHWINSYFDYRVGCLKPGKYKPDCIGFR " mRNA complement(join(5089644..5089745,5089858..5090006, 5090572..5090817,5091718..5091846,5092103..5092213, 5092320..5092449,5093113..5093232,5093408..5093529, 5094949..5095032,5095542..5095658,5096943..5097023, 5097882..5097941,5098058..5098100,5098764..5098862, 5099746..5100002,5100418..5100575,5101570..5101874)) /locus_tag="TCM_022491" /product="Starch branching enzyme 2.1 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g35020.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034384t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033801001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc519t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2888t3" CDS complement(join(5090692..5090817,5091718..5091846, 5092103..5092213,5092320..5092449,5093113..5093232, 5093408..5093529,5094949..5095032,5095542..5095658, 5096943..5097023,5097882..5097941,5098058..5098100, 5098764..5098862,5099746..5100002,5100418..5100575, 5101570..5101699)) /locus_tag="TCM_022491" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG034384t1" /codon_start=1 /product="Starch branching enzyme 2.1 isoform 4" /protein_id="EOY08152.1" /db_xref="Phytozome:GSVIVT01033801001" /db_xref="TAIR:AT2G36390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q08047" /translation="MVYGVSAIRLSCVPSVYRFSQSSFNGARRSSSFSLLLKKDQFSR KIFAQKSSYDSDSSSLTVTASEKVLAPGGQGDGSSSLTGQLESPSTISDDPQVTHDVD GNEMEDDEKVEVEEQESVPSALANNDEEACNEEPSVPLHMKVSTEKSEAKPRSIPPPG AGQKIYEIDPTLLGFREHLDYRYAQYKRMREAIDKYEGGLEVFSRGYEKLGFTRSETG ITYREWAPGAKSAALIGDFNNWNPNADIMSQNEFGVWEIFLPNNADGSPPIPHGSRVK IHMETPSGIKDSIPAWIKFSVQAPGEIPYSGIYYDPQEEEKYVFKHPQPKRPKSLRIY ESHVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAIQEHSYYASFGYHVTNFFA PSSRFGTPDDLKSLIDRAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHLGSR GHHWMWDSRLFNYESWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLEVAFT GNYNEYFGFATDVDAVVYLMLVNDMIHGLYPEAVTIGEDVSGMPTFCLPVQDGGVGFD YRLQMAIADKWIEILKCVVIHF" gene 5101940..5121470 /locus_tag="TCM_022493" /note="dbxref CacaoGD:Thecc1EG022493" mRNA join(5101940..5102307,5110028..5110288,5117826..5118043, 5118368..5118545,5119279..5119365,5120016..5120126, 5120591..5121059,5121161..5121470) /locus_tag="TCM_022493" /product="DnaJ / Sec63 Brl domains-containing protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400004794" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015268t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s07070.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07241t00001" gene complement(5102753..5107629) /locus_tag="TCM_022494" /note="dbxref CacaoGD:Thecc1EG022494" mRNA complement(join(5102753..5103937,5107554..5107629)) /locus_tag="TCM_022494" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete" CDS complement(5103436..5103642) /locus_tag="TCM_022494" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08154.1" /translation="MDSERIRQLIPSVRGWYILVNDSDGCRLIKTFVCTFHLQFLAQK DKSSGQDAASLSYWTIFFVPLVLP" mobile_element 5104468..5110055 /note="source:CACAO_M_E57337_F76_scaffold_9 1 5565" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5109775..5110091 /note="source:INTACT733_F316_scaffold_2-int 1 324" /mobile_element_type="retrotransposon:LTR/Copia" CDS join(5110181..5110288,5117826..5118043,5118368..5118545, 5119279..5119365,5120016..5120126,5120591..5121059, 5121161..5121297) /locus_tag="TCM_022493" /note="paralog of Thecc1EG015268t1" /codon_start=1 /product="DnaJ / Sec63 Brl domains-containing protein" /protein_id="EOY08153.1" /db_xref="Phytozome:POPTR_0004s07070.1" /db_xref="TAIR:AT1G79940.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SSD9" /translation="MSSARAHAIGGRKNKGQATSFPFSSRTLGYCLAIKIGLQMGIAL PPFLLNIDGASGGILLLGIVGVCILLPLVLTVIYLSRSAKYTGNYVMHQTLSAYCYFM KPSLAPSKVLDVFIKAAEFMEIPVRQSDGEPLLKLFMLVRSELNLDLKNIRQEQAKFW KQHPAFVKTALIPRTARGHGWLRPAIGVVELSQNIIQAVPLSARKIVGGSSEGIAPFL QLPYFNEAMVKKIARKKMRTFQDFCGMTLEDRVELLTKVAGLSTGETKDVEMVLEMMP SLTMDVTCETEGEEGIQEGDIVMMHAWITLKLGSSLVASFSHAPYFPFHKEENFWLLV ADSVSNDVWISQKVSFMDEAVAITAASKAIQELKEGSGASLKETNAAVREAVEKVRKD KLKDEIMKQSRAGTRTGPLSEEGSVMEEGIGEEEEEEDGYDDY" mobile_element 5110355..5113283 /note="source:CACAO_M_E34449_F80_scaffold_5 1 2929" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5114750..5114832) /note="source:CACAO_M_E12044_F76_scaffold_2 4413 4492" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 5116125..5118395 /locus_tag="TCM_022495" /note="dbxref CacaoGD:Thecc1EG022495" mRNA join(5116125..5116237,5116602..5116845,5116944..5117039, 5117383..5117503,5117612..5117716,5117826..5118043, 5118368..5118395) /locus_tag="TCM_022495" /product="DnaJ / Sec63 Brl domains-containing protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015268t1" /inference="similar to AA sequence:Phytozome:GSVIVT01028825001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc949t12" CDS join(5116660..5116845,5116944..5117039,5117383..5117503, 5117612..5117631) /locus_tag="TCM_022495" /note="paralog of Thecc1EG015268t1" /codon_start=1 /product="DnaJ / Sec63 Brl domains-containing protein" /protein_id="EOY08155.1" /db_xref="Phytozome:GSVIVT01028825001" /db_xref="TAIR:AT1G79940.4" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SSD9" /translation="MAASEENSALFPIFVLTIMALPLVPYTLVKILNAFSKKTMTIHC QCSVCSRSGKYRKSIFKRISNFSTCRNLTLVLLWIIMVMLIYYIKHTSHEIKVFEPFR ILGLEPGASDLDIKKAYRRLSIQYHPDKNPDPGTQLFC" gene complement(5121580..5124089) /locus_tag="TCM_022496" /note="dbxref CacaoGD:Thecc1EG022496" mRNA complement(join(5121580..5122161,5122375..5122554, 5122768..5122835,5123466..5124089)) /locus_tag="TCM_022496" /product="Hydrolase, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0002s15760.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046216t1" /inference="similar to AA sequence:Phytozome:POPTR_0002s15790.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g08906t00001" CDS complement(join(5122000..5122161,5122375..5122554, 5122768..5122835,5123466..5123976)) /locus_tag="TCM_022496" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG046216t1" /codon_start=1 /product="Hydrolase, putative isoform 1" /protein_id="EOY08156.1" /db_xref="Phytozome:POPTR_0002s15790.1" /db_xref="TAIR:AT3G09970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T793" /translation="MTDPAYKPRTVICIGDIHGHITKLVNLWSNLQSKIDPESFNTAT IIFLGDYCDRGPDTLKVIDFLVSLPRQYPNQKHVFLSGNHDFAFAGFVGVLPGEFEAK DTWEEYADNEEREGWYKGEGYEKMHLQARIWSGWLKAKFNAAKGLECKGSIYDAAPTF ESYGVSHGSADLVKAVPEDHKKFLADMVWVHEEDDVCIETEEGLKHCKLVAVHAGLER GKYIQEQLEFLKARDTRVPKVTALSGRKDVWDIPKELTETIVVSGHHGKLHIDGLRLV IDEGGGLESNPVAAVVLPSMKIVRDTDNIS" mRNA complement(join(5122139..5122270,5122375..5122554, 5122768..5122835,5123466..5124054)) /locus_tag="TCM_022496" /product="Calcineurin-like metallo-phosphoesterase superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0002s15760.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046216t1" /inference="similar to AA sequence:Phytozome:POPTR_0002s15790.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc874t4; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc949t10_C1; inference alignment:Newbler:10:TSA:cgbaP2_g08906t00001" mRNA complement(join(5122139..5122554,5122768..5122835, 5123466..5124054)) /locus_tag="TCM_022496" /product="Calcineurin-like metallo-phosphoesterase superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0002s15760.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046216t1" /inference="similar to AA sequence:Phytozome:POPTR_0002s15790.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc874t8; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc949t10_C1; inference alignment:Newbler:10:TSA:cgbaP2_g08906t00001" mRNA complement(join(5122162..5122265,5122375..5122554, 5122768..5122835,5123466..5124055)) /locus_tag="TCM_022496" /product="Calcineurin-like metallo-phosphoesterase superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0002s15760.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046216t1" /inference="similar to AA sequence:Phytozome:POPTR_0002s15790.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc949t10_C1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc949t10_C1; inference alignment:Newbler:10:TSA:cgbaP2_g08906t00001" CDS complement(join(5122202..5122270,5122375..5122554, 5122768..5122835,5123466..5123976)) /locus_tag="TCM_022496" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG046216t1" /codon_start=1 /product="Calcineurin-like metallo-phosphoesterase superfamily protein isoform 2" /protein_id="EOY08157.1" /db_xref="Phytozome:POPTR_0002s15790.1" /db_xref="TAIR:AT3G09970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SR62" /translation="MTDPAYKPRTVICIGDIHGHITKLVNLWSNLQSKIDPESFNTAT IIFLGDYCDRGPDTLKVIDFLVSLPRQYPNQKHVFLSGNHDFAFAGFVGVLPGEFEAK DTWEEYADNEEREGWYKGEGYEKMHLQARIWSGWLKAKFNAAKGLECKGSIYDAAPTF ESYGVSHGSADLVKAVPEDHKKFLADMVWVHEEDDVCIETEEGLKHCKLVAVHAGLER GKYIQEQLEFLKARDTRVPKVTALSGRKDVWDIPKCSFLLGGVLCSFCGLNNMIVMI" CDS complement(join(5122224..5122265,5122375..5122554, 5122768..5122835,5123466..5123976)) /locus_tag="TCM_022496" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG046216t1" /codon_start=1 /product="Calcineurin-like metallo-phosphoesterase superfamily protein isoform 3" /protein_id="EOY08158.1" /db_xref="Phytozome:POPTR_0002s15790.1" /db_xref="TAIR:AT3G09970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SR62" /translation="MTDPAYKPRTVICIGDIHGHITKLVNLWSNLQSKIDPESFNTAT IIFLGDYCDRGPDTLKVIDFLVSLPRQYPNQKHVFLSGNHDFAFAGFVGVLPGEFEAK DTWEEYADNEEREGWYKGEGYEKMHLQARIWSGWLKAKFNAAKGLECKGSIYDAAPTF ESYGVSHGSADLVKAVPEDHKKFLADMVWVHEEDDVCIETEEGLKHCKLVAVHAGLER GKYIQEQLEFLKARDTRVPKVTALSGRKDVWDIPKLPFRRGTLQLLWA" CDS complement(join(5122306..5122554,5122768..5122835, 5123466..5123976)) /locus_tag="TCM_022496" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG046216t1" /codon_start=1 /product="Calcineurin-like metallo-phosphoesterase superfamily protein isoform 4" /protein_id="EOY08159.1" /db_xref="Phytozome:POPTR_0002s15790.1" /db_xref="TAIR:AT3G09970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SR62" /translation="MTDPAYKPRTVICIGDIHGHITKLVNLWSNLQSKIDPESFNTAT IIFLGDYCDRGPDTLKVIDFLVSLPRQYPNQKHVFLSGNHDFAFAGFVGVLPGEFEAK DTWEEYADNEEREGWYKGEGYEKMHLQARIWSGWLKAKFNAAKGLECKGSIYDAAPTF ESYGVSHGSADLVKAVPEDHKKFLADMVWVHEEDDVCIETEEGLKHCKLVAVHAGLER GKYIQEQLEFLKARDTRVPKVTALSGRKDVWDIPKVMNSSLLMKQLLSVFDIVFLSV" gene complement(5126860..5130915) /locus_tag="TCM_022497" /note="dbxref CacaoGD:Thecc1EG022497" mRNA complement(join(5126860..5127239,5127331..5127479, 5129100..5129285,5130192..5130373,5130827..5130915)) /locus_tag="TCM_022497" /product="Uncharacterized protein" /inference="similar to AA sequence:frave:gene23502" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS complement(join(5127137..5127239,5127331..5127479, 5129100..5129285,5130192..5130373,5130827..5130845)) /locus_tag="TCM_022497" /note="dbxref frave:gene23502" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08160.1" /translation="MRDWLIWTGEEGEDPTGFRYVQGKTVSARGRREQDGPRLDHDQC FIRSRLQTICGSIVVVAGREHRRDGSLQVKSPLHQVVDEDLNLLLEYVQLVPHTQNMC NWSLTLKGTSSSSEAASFPFSTLGSLEVLDSGRVVHVDVDVIKLGMQDKKQLMDSLLK VAEEDNENFLRRLSDRTDRVGIEIPMIEVRFKHLAVEGDVYVGSRAFNSYST" mobile_element 5127864..5130026 /note="source:CACAO_PIF_E119_scaffold_3 6784 8945" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(5132075..5132145) /note="source:scaffold_3_CACTA_0382 1868 1942" /mobile_element_type="transposon:TIR/CACTA" gene complement(5137954..5146419) /locus_tag="TCM_022498" /note="dbxref CacaoGD:Thecc1EG022498" mRNA complement(join(5137954..5138627,5138741..5138995, 5139125..5139296,5139453..5139680,5139767..5139900, 5140015..5140098,5140209..5140499,5140604..5140936, 5141051..5141187,5141306..5141392,5141497..5141662, 5141799..5141902,5142118..5142278,5142421..5143321, 5143801..5143891,5143986..5144276,5144359..5144443, 5144771..5144859,5145222..5145342,5145458..5146419)) /locus_tag="TCM_022498" /product="Pleiotropic drug resistance 11 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s11590.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027690t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s11590.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1310t3" mobile_element complement(5138048..5138099) /note="source:scaffold_3_CACTA_0382 1861 1912" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5138059..5138109) /note="source:CACAO_PIF_E119_scaffold_3 2588 2638" /mobile_element_type="transposon:TIR/PIF-Harbinger" mRNA complement(join(5138123..5138627,5139123..5139296, 5139453..5139680,5139767..5139900,5140015..5140098, 5140209..5140499,5140604..5140936,5141051..5141187, 5141306..5141392,5141497..5141662,5141799..5141902, 5142118..5142278,5142421..5143321,5143801..5143891, 5143986..5144276,5144359..5144443,5144771..5144859, 5145222..5145342,5145458..5146232)) /locus_tag="TCM_022498" /product="Pleiotropic drug resistance 11 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s11590.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027690t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s11590.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1273t3; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1310t3" mRNA complement(join(5138123..5138627,5138741..5139296, 5139453..5139680,5139767..5139900,5140015..5140098, 5140209..5140499,5140604..5140936,5141051..5141187, 5141306..5141392,5141497..5141662,5141799..5141902, 5142118..5142278,5142421..5143321,5143801..5143891, 5143986..5144276,5144359..5144443,5144771..5144859, 5145222..5145342,5145458..5146232)) /locus_tag="TCM_022498" /product="Pleiotropic drug resistance 11 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s11590.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027690t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s11590.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1483t2; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1310t3" CDS complement(join(5138358..5138627,5138741..5138995, 5139125..5139296,5139453..5139680,5139767..5139900, 5140015..5140098,5140209..5140499,5140604..5140936, 5141051..5141187,5141306..5141392,5141497..5141662, 5141799..5141902,5142118..5142278,5142421..5143321, 5143801..5143891,5143986..5144276,5144359..5144443, 5144771..5144859,5145222..5145342,5145458..5145840)) /locus_tag="TCM_022498" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG027690t1" /codon_start=1 /product="Pleiotropic drug resistance 11 isoform 1" /protein_id="EOY08161.1" /db_xref="Phytozome:POPTR_0006s11590.1" /db_xref="TAIR:AT1G66950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7PC84" /translation="MASALAGDDLARSMSSRRSWAASGSHRSWASASFREVWQPPPEV FNRSGRQDDEEELRWAAIERLPTYDRLRKGMLRQVLDNGRIVHDEVDVTKLGLQDKKQ LMDSMLKVVEEDNERFLRRLRDRTDRVGIEIPKIEVRFEHLAVEGDVYVGSRALPTLL NVTLNTIESILGLVRLAPSKKRKIQILKDVSGIVKPSRMTLLLGPPGAGKTTLLLALA GKLDRDLRSSGKVTYCGHELNEFVPQRTCAYIGQHDLHYGEMTVRETLDFSGRCLGVG TRYEMLSELSRREKEAGIKPDSEIDAFMKATALAGQETSLVTDYILKILGLDICADIM VGDEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQICKFMRQMVHIM DVTMVISLLQPAPETYDLFDDIIVLSEGLIVYQGPRENVLDFFEYMGFKCPERKGVAD FLQEVTSKKDQEQYWFKKNQPYRYVSSSDFVHGFSSFHIGQQLASDLRVPYDKSRTHP AALVTEKYGISNWELFRACFAREWLLMKRNSFVYIFKTVQITIMSLIALTVYLRTEMP VGTLEDGQKFFGALFFSLINVMFNGMAELAMTVFRLPVFYKQRDFLFYPAWAFGLPIW VLRIPLSLMESGIWIALTYYTIGFAPAASRFFRQFLAFFGIHQMALSLFRFIAAVGRT QVVANTLGTFTLLLVFVLGGFIVAKDDIEPWMIWGYYVSPMMYGQNAIVMNEFLDARW SAKNNDTRINAPTVGKVLLKTRGFFTEDYWFWICVGALFAFSLVFNILFIGALTFLNP LGDSKAVVVNDNENNKTKNPYSAGRRPEGTNQQVRNSSDIVGAAGHAPRKGMVLPFQP LSLAFNHINYYVDMPAEMKTQGIEEDRLQLLRDVSGAFRPGILTALVGVSGAGKTTLM DVLAGRKTGGYIEGNISISGYTKNQATFARVSGYCEQNDIHSPNVTVYESLLYSAWLR LSSDIDTKTRKMFVDEVMELVELKPLRNALVGLPGVDGLSTEQRKRLTIAVELVANPS IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG QVIYAGPLGRHSHKLIEYFEAVQGVQKIRDGHNPATWMLEVSAPPVEAQLNVDFADIY ANSSLYRRNQELIKELSAPAPGSKDLFFPTKYSQPFLTQCKACFWKQHWSYWRNPQYN AIRFFLTIFIGILFGLIFWNKGEQTTKQQDLMNLLGAMYSAVLFLGATNASAVQSVVA IERTVFYRERAAGMYSELPYAFAQVAIETIYTAIQTIIYTLLLYSMIGFEWKVGKFLW FYYYILTCFVYFTLYGMMVVALTPGHQIAAIVMSFFLSFWNLFSGFLIPRTQIPVWWR WYYWASPVAWTLYGLVTSQVGDKNALVEVPGQGDISVKDFLKGTLGFEYDFLPAVAAA HIGWCLLFFFVFAYGIKFLNFQRR" CDS complement(join(5138558..5138627,5139123..5139296, 5139453..5139680,5139767..5139900,5140015..5140098, 5140209..5140499,5140604..5140936,5141051..5141187, 5141306..5141392,5141497..5141662,5141799..5141902, 5142118..5142278,5142421..5143321,5143801..5143891, 5143986..5144276,5144359..5144443,5144771..5144859, 5145222..5145342,5145458..5145840)) /locus_tag="TCM_022498" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG027690t1" /codon_start=1 /product="Pleiotropic drug resistance 11 isoform 2" /protein_id="EOY08162.1" /db_xref="Phytozome:POPTR_0006s11590.1" /db_xref="TAIR:AT1G66950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7PC84" /translation="MASALAGDDLARSMSSRRSWAASGSHRSWASASFREVWQPPPEV FNRSGRQDDEEELRWAAIERLPTYDRLRKGMLRQVLDNGRIVHDEVDVTKLGLQDKKQ LMDSMLKVVEEDNERFLRRLRDRTDRVGIEIPKIEVRFEHLAVEGDVYVGSRALPTLL NVTLNTIESILGLVRLAPSKKRKIQILKDVSGIVKPSRMTLLLGPPGAGKTTLLLALA GKLDRDLRSSGKVTYCGHELNEFVPQRTCAYIGQHDLHYGEMTVRETLDFSGRCLGVG TRYEMLSELSRREKEAGIKPDSEIDAFMKATALAGQETSLVTDYILKILGLDICADIM VGDEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQICKFMRQMVHIM DVTMVISLLQPAPETYDLFDDIIVLSEGLIVYQGPRENVLDFFEYMGFKCPERKGVAD FLQEVTSKKDQEQYWFKKNQPYRYVSSSDFVHGFSSFHIGQQLASDLRVPYDKSRTHP AALVTEKYGISNWELFRACFAREWLLMKRNSFVYIFKTVQITIMSLIALTVYLRTEMP VGTLEDGQKFFGALFFSLINVMFNGMAELAMTVFRLPVFYKQRDFLFYPAWAFGLPIW VLRIPLSLMESGIWIALTYYTIGFAPAASRFFRQFLAFFGIHQMALSLFRFIAAVGRT QVVANTLGTFTLLLVFVLGGFIVAKDDIEPWMIWGYYVSPMMYGQNAIVMNEFLDARW SAKNNDTRINAPTVGKVLLKTRGFFTEDYWFWICVGALFAFSLVFNILFIGALTFLNP LGDSKAVVVNDNENNKTKNPYSAGRRPEGTNQQVRNSSDIVGAAGHAPRKGMVLPFQP LSLAFNHINYYVDMPAEMKTQGIEEDRLQLLRDVSGAFRPGILTALVGVSGAGKTTLM DVLAGRKTGGYIEGNISISGYTKNQATFARVSGYCEQNDIHSPNVTVYESLLYSAWLR LSSDIDTKTRKMFVDEVMELVELKPLRNALVGLPGVDGLSTEQRKRLTIAVELVANPS IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG QVIYAGPLGRHSHKLIEYFEAVQGVQKIRDGHNPATWMLEVSAPPVEAQLNVDFADIY ANSSLYRRNQELIKELSAPAPGSKDLFFPTKYSQPFLTQCKACFWKQHWSYWRNPQYN AIRFFLTIFIGILFGLIFWNKGEQTTKQQDLMNLLGAMYSAVLFLGATNASAVQSVVA IERTVFYRERAAGMYSELPYAFAQVKSLYGGGGTTGLLPWLGHYMGL" CDS complement(join(5139113..5139296,5139453..5139680, 5139767..5139900,5140015..5140098,5140209..5140499, 5140604..5140936,5141051..5141187,5141306..5141392, 5141497..5141662,5141799..5141902,5142118..5142278, 5142421..5143321,5143801..5143891,5143986..5144276, 5144359..5144443,5144771..5144859,5145222..5145342, 5145458..5145840)) /locus_tag="TCM_022498" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG027690t1" /codon_start=1 /product="Pleiotropic drug resistance 11 isoform 3" /protein_id="EOY08163.1" /db_xref="Phytozome:POPTR_0006s11590.1" /db_xref="TAIR:AT1G66950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7PC84" /translation="MASALAGDDLARSMSSRRSWAASGSHRSWASASFREVWQPPPEV FNRSGRQDDEEELRWAAIERLPTYDRLRKGMLRQVLDNGRIVHDEVDVTKLGLQDKKQ LMDSMLKVVEEDNERFLRRLRDRTDRVGIEIPKIEVRFEHLAVEGDVYVGSRALPTLL NVTLNTIESILGLVRLAPSKKRKIQILKDVSGIVKPSRMTLLLGPPGAGKTTLLLALA GKLDRDLRSSGKVTYCGHELNEFVPQRTCAYIGQHDLHYGEMTVRETLDFSGRCLGVG TRYEMLSELSRREKEAGIKPDSEIDAFMKATALAGQETSLVTDYILKILGLDICADIM VGDEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTFQICKFMRQMVHIM DVTMVISLLQPAPETYDLFDDIIVLSEGLIVYQGPRENVLDFFEYMGFKCPERKGVAD FLQEVTSKKDQEQYWFKKNQPYRYVSSSDFVHGFSSFHIGQQLASDLRVPYDKSRTHP AALVTEKYGISNWELFRACFAREWLLMKRNSFVYIFKTVQITIMSLIALTVYLRTEMP VGTLEDGQKFFGALFFSLINVMFNGMAELAMTVFRLPVFYKQRDFLFYPAWAFGLPIW VLRIPLSLMESGIWIALTYYTIGFAPAASRFFRQFLAFFGIHQMALSLFRFIAAVGRT QVVANTLGTFTLLLVFVLGGFIVAKDDIEPWMIWGYYVSPMMYGQNAIVMNEFLDARW SAKNNDTRINAPTVGKVLLKTRGFFTEDYWFWICVGALFAFSLVFNILFIGALTFLNP LGDSKAVVVNDNENNKTKNPYSAGRRPEGTNQQVRNSSDIVGAAGHAPRKGMVLPFQP LSLAFNHINYYVDMPAEMKTQGIEEDRLQLLRDVSGAFRPGILTALVGVSGAGKTTLM DVLAGRKTGGYIEGNISISGYTKNQATFARVSGYCEQNDIHSPNVTVYESLLYSAWLR LSSDIDTKTRKMFVDEVMELVELKPLRNALVGLPGVDGLSTEQRKRLTIAVELVANPS IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG QVIYAGPLGRHSHKLIEYFEAVQGVQKIRDGHNPATWMLEVSAPPVEAQLNVDFADIY ANSSLYRRNQELIKELSAPAPGSKDLFFPTKYSQPFLTQCKACFWKQHWSYWRNPQYN AIRFFLTIFIGILFGLIFWNKGEQTTKQQDLMNLLGAMYSAVLFLGATNASAVQSVVA IERTVFYRERAAGMYSELPYAFAQVQI" mobile_element complement(5147281..5147688) /note="source:CACAO_Mariner_E176_scaffold_6 9279 9686" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(5147691..5147919) /note="source:CACAO_Mariner_E176_scaffold_6 1530 1756" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene 5148028..5148604 /locus_tag="TCM_022499" /note="dbxref CacaoGD:Thecc1EG022499" mRNA 5148028..5148604 /locus_tag="TCM_022499" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.21 coverage" CDS 5148186..5148533 /locus_tag="TCM_022499" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08164.1" /translation="MYKTNVKCLKYIFFSFSLFSFLSSQLTMLFYVDPLMVESGSLVA RSSSVEERRRAQGNTKSDIPMVRFGQGTSSRYLLCCLPSLFVIICRLRIEKNLVREGE RMLGRERKKLYLI" gene complement(5159962..5171276) /locus_tag="TCM_022500" /note="dbxref CacaoGD:Thecc1EG022500" mRNA complement(join(5159962..5160078,5160417..5160613, 5160702..5161313,5161650..5161718,5161835..5161879, 5162425..5162505,5163335..5163390,5163695..5163938, 5164563..5164910,5165304..5165449,5166091..5166372, 5166803..5167358,5168000..5168151,5168259..5168295, 5168529..5168634,5168719..5168807,5169708..5169713, 5169790..5169849,5170270..5170390,5170571..5170621, 5170715..5171276)) /locus_tag="TCM_022500" /product="BTB/POZ domain-containing protein FBL11, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033817001" /inference="similar to AA sequence:Phytozome:GSVIVT01033817001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2296t6" mRNA complement(join(5160815..5161313,5161650..5161718, 5161835..5161879,5162425..5162505,5163335..5163390, 5163695..5163938,5164563..5164910,5165304..5165449, 5166091..5166372,5166803..5167358,5168000..5168132, 5168259..5168295,5168529..5168634,5168719..5168807, 5169708..5169849,5170270..5170390,5170571..5170621, 5170715..5170982)) /locus_tag="TCM_022500" /product="BTB/POZ domain-containing protein FBL11, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033817001" /inference="similar to AA sequence:Phytozome:GSVIVT01033817001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2296t6; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2296t6; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc928t8" mRNA complement(join(5160824..5161313,5161650..5161718, 5161835..5161879,5162425..5162505,5163335..5163390, 5163695..5163938,5164563..5164910,5165304..5165449, 5166091..5166372,5166803..5167358,5168000..5168169, 5168529..5168634,5168719..5168807,5169708..5169849, 5170270..5170390,5170571..5170621,5170715..5170957)) /locus_tag="TCM_022500" /product="Ubiquitin-protein ligases, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033817001" /inference="similar to AA sequence:Phytozome:GSVIVT01033817001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1002t7; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2296t6; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc928t8" CDS complement(join(5161140..5161313,5161650..5161718, 5161835..5161879,5162425..5162505,5163335..5163390, 5163695..5163938,5164563..5164910,5165304..5165449, 5166091..5166372,5166803..5167358,5168000..5168151, 5168259..5168295,5168529..5168634,5168719..5168807, 5169708..5169713,5169790..5169849,5170270..5170390, 5170571..5170621,5170715..5170899)) /locus_tag="TCM_022500" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="BTB/POZ domain-containing protein FBL11, putative isoform 1" /protein_id="EOY08165.1" /db_xref="Phytozome:GSVIVT01033817001" /db_xref="TAIR:AT2G36370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8S8F2" /translation="MASASGSDDDDFVILVCTDPTNEIEGDISNEEIVISTTDIFRWD FPSTLSFRTFKIRAHRNRLIEESSYFRGLLGGSFSESCLDCISIQWHLETFLNVVKCM FHCPLDITSKNFIPLFQAALYFGVEILLLQLKSWFSESMMWAMSSKFFEDVPYDLLLL CIKHPHLTVDSEKHLSDALLIWLDSNIERLQRSNKTECGFSDILKQIRISLLPLWFAA GKRSSSSFSELANESVDSIFRLTQVTPIGPINALRDGDLSHLRIRLTEYSKRVDLSGC LQITTMILLLSLLPNNHSVGSALRKSIEESISNLEQADGSKYQIPQGLLPTLSFEAVQ EVDISGCLKLHLEAAIECFSKSFPSLRKVKAAYLLNFKTTTLYRLVQKCSLVSEVDIT VDMDPLISSQVSVISSSSAVISLAQNRPYTVGDSSSVTSLYHLGHSLSNITKLTLEGR SDVCDSDIQYIAKFCVSLCYLNLKGCISLTDVCIANLIRRCTKLHSIVVCHTSFGMNS ILALCTASSILSNSPTAQFGKKHLDSLAANLQLLHMGGCKCADEASLQELLSQTQMLK SLCLGDTNLVDDALCNFSGSFLEMLDISNTMISTAALNLVVRTNPGLKCLNARGCKNL FQPENTTKVAKFSSPYTCEELFIELGKTCRLEEIALGWGFSYFSLQGLKPAILSLRAM TVGLGGSLPEDALRLLPTTCPMLESLVLYFQVISDCIIINIMKSLRQLQTLAFCYCLG DISISSFKLSMLNLRKLRLERVTPWLTNNDLVLLTQNFANLVELALLGCKLLNSEAQC IISSGWPGLIAIHLEDCGEVTRSGVCSLFNCTALEDLLLRHNGPGIQRNFILDAASKM PMLRQVSLDLCDASEGDFDLPDDADRYCLRSVKIARCKSQRCNVGPYFAEAHRKPVHR ETLVLVWNSRNVFRTVVKERL" CDS complement(join(5161140..5161313,5161650..5161718, 5161835..5161879,5162425..5162505,5163335..5163390, 5163695..5163938,5164563..5164910,5165304..5165449, 5166091..5166372,5166803..5167358,5168000..5168132, 5168259..5168272)) /locus_tag="TCM_022500" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="BTB/POZ domain-containing protein FBL11, putative isoform 2" /protein_id="EOY08166.1" /db_xref="Phytozome:GSVIVT01033817001" /db_xref="TAIR:AT2G36370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HKJ6" /translation="MVCCSFSELANESVDSIFRLTQVTPIGPINALRDGDLSHLRIRL TEYSKRVDLSGCLQITTMILLLSLLPNNHSVGSALRKSIEESISNLEQADGSKYQIPQ GLLPTLSFEAVQEVDISGCLKLHLEAAIECFSKSFPSLRKVKAAYLLNFKTTTLYRLV QKCSLVSEVDITVDMDPLISSQVSVISSSSAVISLAQNRPYTVGDSSSVTSLYHLGHS LSNITKLTLEGRSDVCDSDIQYIAKFCVSLCYLNLKGCISLTDVCIANLIRRCTKLHS IVVCHTSFGMNSILALCTASSILSNSPTAQFGKKHLDSLAANLQLLHMGGCKCADEAS LQELLSQTQMLKSLCLGDTNLVDDALCNFSGSFLEMLDISNTMISTAALNLVVRTNPG LKCLNARGCKNLFQPENTTKVAKFSSPYTCEELFIELGKTCRLEEIALGWGFSYFSLQ GLKPAILSLRAMTVGLGGSLPEDALRLLPTTCPMLESLVLYFQVISDCIIINIMKSLR QLQTLAFCYCLGDISISSFKLSMLNLRKLRLERVTPWLTNNDLVLLTQNFANLVELAL LGCKLLNSEAQCIISSGWPGLIAIHLEDCGEVTRSGVCSLFNCTALEDLLLRHNGPGI QRNFILDAASKMPMLRQVSLDLCDASEGDFDLPDDADRYCLRSVKIARCKSQRCNVGP YFAEAHRKPVHRETLVLVWNSRNVFRTVVKERL" CDS complement(join(5161140..5161313,5161650..5161718, 5161835..5161879,5162425..5162505,5163335..5163390, 5163695..5163938,5164563..5164910,5165304..5165449, 5166091..5166372,5166803..5167322)) /locus_tag="TCM_022500" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Ubiquitin-protein ligases, putative isoform 3" /protein_id="EOY08167.1" /db_xref="Phytozome:GSVIVT01033817001" /db_xref="TAIR:AT2G36370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HKJ6" /translation="MILLLSLLPNNHSVGSALRKSIEESISNLEQADGSKYQIPQGLL PTLSFEAVQEVDISGCLKLHLEAAIECFSKSFPSLRKVKAAYLLNFKTTTLYRLVQKC SLVSEVDITVDMDPLISSQVSVISSSSAVISLAQNRPYTVGDSSSVTSLYHLGHSLSN ITKLTLEGRSDVCDSDIQYIAKFCVSLCYLNLKGCISLTDVCIANLIRRCTKLHSIVV CHTSFGMNSILALCTASSILSNSPTAQFGKKHLDSLAANLQLLHMGGCKCADEASLQE LLSQTQMLKSLCLGDTNLVDDALCNFSGSFLEMLDISNTMISTAALNLVVRTNPGLKC LNARGCKNLFQPENTTKVAKFSSPYTCEELFIELGKTCRLEEIALGWGFSYFSLQGLK PAILSLRAMTVGLGGSLPEDALRLLPTTCPMLESLVLYFQVISDCIIINIMKSLRQLQ TLAFCYCLGDISISSFKLSMLNLRKLRLERVTPWLTNNDLVLLTQNFANLVELALLGC KLLNSEAQCIISSGWPGLIAIHLEDCGEVTRSGVCSLFNCTALEDLLLRHNGPGIQRN FILDAASKMPMLRQVSLDLCDASEGDFDLPDDADRYCLRSVKIARCKSQRCNVGPYFA EAHRKPVHRETLVLVWNSRNVFRTVVKERL" mRNA complement(join(<5162482..5162505,5163695..5163938, 5164563..5164910,5165304..5165449,5166091..5166372, 5166803..5167358,5168000..5168151,5168259..5168295, 5168529..5168634,5168719..5168807,5169708..5169849, 5170270..5170390,5170571..5170621,5170715..5170957)) /locus_tag="TCM_022500" /product="BTB/POZ domain-containing protein FBL11, putative isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033817001" /inference="similar to AA sequence:Phytozome:GSVIVT01033817001" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc928t3; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc928t8; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2296t6" mRNA complement(join(5162482..5163390,5163695..5163938, 5164563..5164910,5165304..5165449,5166091..5166372, 5166803..5167358,5168000..5168151,5168259..5168295, 5168529..5168634,5168719..5168807,5169708..5169849, 5170270..5170390,5170571..5170621,5170715..5170957)) /locus_tag="TCM_022500" /product="BTB/POZ domain-containing protein FBL11, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033817001" /inference="similar to AA sequence:Phytozome:GSVIVT01033817001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc928t6; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc928t8; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2296t6" CDS complement(join(<5162483..5162505,5163695..5163938, 5164563..5164910,5165304..5165449,5166091..5166372, 5166803..5167358,5168000..5168151,5168259..5168295, 5168529..5168634,5168719..5168807,5169708..5169710)) /locus_tag="TCM_022500" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="BTB/POZ domain-containing protein FBL11, putative isoform 5" /protein_id="EOY08169.1" /db_xref="Phytozome:GSVIVT01033817001" /db_xref="TAIR:AT2G36370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BZ61" /translation="MMWAMSSKFFEDVPYDLLLLCIKHPHLTVDSEKHLSDALLIWLD SNIERLQRSNKTECGFSDILKQIRISLLPLWFAAGKRSSSSFSELANESVDSIFRLTQ VTPIGPINALRDGDLSHLRIRLTEYSKRVDLSGCLQITTMILLLSLLPNNHSVGSALR KSIEESISNLEQADGSKYQIPQGLLPTLSFEAVQEVDISGCLKLHLEAAIECFSKSFP SLRKVKAAYLLNFKTTTLYRLVQKCSLVSEVDITVDMDPLISSQVSVISSSSAVISLA QNRPYTVGDSSSVTSLYHLGHSLSNITKLTLEGRSDVCDSDIQYIAKFCVSLCYLNLK GCISLTDVCIANLIRRCTKLHSIVVCHTSFGMNSILALCTASSILSNSPTAQFGKKHL DSLAANLQLLHMGGCKCADEASLQELLSQTQMLKSLCLGDTNLVDDALCNFSGSFLEM LDISNTMISTAALNLVVRTNPGLKCLNARGCKNLFQPENTTKVAKFSSPYTCEELFIE LGKTCRLEEIALGWGFSYFSLQGLKPAILSLRAMTVGLGGSLPEDALRLLPTTCPMLE SLVLYFQVISDCIIINIMKSLRQLQTLAFCYCLGDISISSFKLSMLNLRKLRLERVTP WLTNNDLVLLTQNFANLVELALLGCKLLNSGLWRSDQK" CDS complement(join(5163272..5163390,5163695..5163938, 5164563..5164910,5165304..5165449,5166091..5166372, 5166803..5167358,5168000..5168151,5168259..5168295, 5168529..5168634,5168719..5168807,5169708..5169710)) /locus_tag="TCM_022500" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="BTB/POZ domain-containing protein FBL11, putative isoform 4" /protein_id="EOY08168.1" /db_xref="Phytozome:GSVIVT01033817001" /db_xref="TAIR:AT2G36370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BZ61" /translation="MMWAMSSKFFEDVPYDLLLLCIKHPHLTVDSEKHLSDALLIWLD SNIERLQRSNKTECGFSDILKQIRISLLPLWFAAGKRSSSSFSELANESVDSIFRLTQ VTPIGPINALRDGDLSHLRIRLTEYSKRVDLSGCLQITTMILLLSLLPNNHSVGSALR KSIEESISNLEQADGSKYQIPQGLLPTLSFEAVQEVDISGCLKLHLEAAIECFSKSFP SLRKVKAAYLLNFKTTTLYRLVQKCSLVSEVDITVDMDPLISSQVSVISSSSAVISLA QNRPYTVGDSSSVTSLYHLGHSLSNITKLTLEGRSDVCDSDIQYIAKFCVSLCYLNLK GCISLTDVCIANLIRRCTKLHSIVVCHTSFGMNSILALCTASSILSNSPTAQFGKKHL DSLAANLQLLHMGGCKCADEASLQELLSQTQMLKSLCLGDTNLVDDALCNFSGSFLEM LDISNTMISTAALNLVVRTNPGLKCLNARGCKNLFQPENTTKVAKFSSPYTCEELFIE LGKTCRLEEIALGWGFSYFSLQGLKPAILSLRAMTVGLGGSLPEDALRLLPTTCPMLE SLVLYFQVISDCIIINIMKSLRQLQTLAFCYCLGDISISSFKLSMLNLRKLRLERVTP WLTNNDLVLLTQNFANLVELALLGCKLLNSEAQCIISSGWPGLIAIHLEVCYDLYSRI WTIFLGSSVFF" gene complement(5172409..5177855) /locus_tag="TCM_022501" /note="dbxref CacaoGD:Thecc1EG022501" mRNA complement(join(5172409..5174075,5174767..5176576, 5177581..5177855)) /locus_tag="TCM_022501" /product="KCBP-interacting protein kinase, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:27461.m000100" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041476t1" /inference="similar to AA sequence:frave:gene30242" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.42 coverage; inference alignment:PASA:2:TSA:puevd3b021774t1a2; alternateUTRof:Thecc1EG022501t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2898t3" mRNA complement(join(5172409..5174075,5174767..5176728, 5177581..5177855)) /locus_tag="TCM_022501" /product="KCBP-interacting protein kinase, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:27461.m000100" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041476t1" /inference="similar to AA sequence:frave:gene30242" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.40 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2898t3" CDS complement(join(5173229..5174075,5174767..5176544)) /locus_tag="TCM_022501" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene30242; paralog of Thecc1EG041476t1" /codon_start=1 /product="KCBP-interacting protein kinase, putative isoform 1" /protein_id="EOY08170.1" /db_xref="TAIR:AT2G36350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T6Y2" /translation="MGSYSGTCEIVEAGEELKPVQRSRGAYRPHSGLGVGDKDRKPPV LKLGFKDSLENDINQLFESINLKGPKGLSVSYQGGASSSSLKKNALKKPITVGMPHSP RIGGSEPLSLKQALRDLCISKASEMAAMKRLSMSVSSPGISEAGRIKSLFNSVVVESA SGSGLSRDEDKGSMVEISLVPEESKSTSSRMMAVPHQAPKIKSLSQSVNSSPRFARVT TQISTETSTSTQIDVSTSRKVGSRAPKAELHLKEKHTSASSPSCSYADDNMLEPDNTL PASSKFPKRASTPKSGRKGRLHAAPSSSSINGNRVSRMTRNAPRVAKTVVRNKSSVKK KIKQDFPSAACASNTFNQVNSSLESTTSQLVCQRCQCSLKSVTNQDSVKPQSAGTSAE VSSSHVNSDVHKPTLVENNANRGRAVIPRAKKSPKSREKGEFSQSSSSLGDSSSTSIS DDSNLSGSSCGNRPHMSKDVRWEAIRHIRMQDGVLELRHFNLLKKLGCGDIGTVYLAE LIGANCLFAIKVMDNEFLSRRKKMPRAQTEREILRMLDHPFLPTLYTQFTSDNLSCLV MEYCPGGDLHVLRQRQSGRCFPEPAARFYVAEVLLALEYLHMLGVVYRDLKPENILVR EDGHIMLTDFDLSLRCTVSPTLLKSSSNLDPARISGPCTSSSCVQPFCIEPSCEVPCF SPRFFPAAAKTKRQAKADLAAQIRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKGEGH GAAVDWWTFGIFLYELLYGRTPFKGAGNEETLANVVLQSLKFPDSPLVSFQARDLIRG LLVKEPENRLGTEKGAAEIKQHPFFEGLNWALIRCAVPPELPELYEFGVPSVMSPETE SNYLECKATGEHLEFELF" CDS complement(join(5173229..5174075,5174767..5176544)) /locus_tag="TCM_022501" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene30242; paralog of Thecc1EG041476t1" /codon_start=1 /product="KCBP-interacting protein kinase, putative isoform 1" /protein_id="EOY08171.1" /db_xref="TAIR:AT2G36350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T6Y2" /translation="MGSYSGTCEIVEAGEELKPVQRSRGAYRPHSGLGVGDKDRKPPV LKLGFKDSLENDINQLFESINLKGPKGLSVSYQGGASSSSLKKNALKKPITVGMPHSP RIGGSEPLSLKQALRDLCISKASEMAAMKRLSMSVSSPGISEAGRIKSLFNSVVVESA SGSGLSRDEDKGSMVEISLVPEESKSTSSRMMAVPHQAPKIKSLSQSVNSSPRFARVT TQISTETSTSTQIDVSTSRKVGSRAPKAELHLKEKHTSASSPSCSYADDNMLEPDNTL PASSKFPKRASTPKSGRKGRLHAAPSSSSINGNRVSRMTRNAPRVAKTVVRNKSSVKK KIKQDFPSAACASNTFNQVNSSLESTTSQLVCQRCQCSLKSVTNQDSVKPQSAGTSAE VSSSHVNSDVHKPTLVENNANRGRAVIPRAKKSPKSREKGEFSQSSSSLGDSSSTSIS DDSNLSGSSCGNRPHMSKDVRWEAIRHIRMQDGVLELRHFNLLKKLGCGDIGTVYLAE LIGANCLFAIKVMDNEFLSRRKKMPRAQTEREILRMLDHPFLPTLYTQFTSDNLSCLV MEYCPGGDLHVLRQRQSGRCFPEPAARFYVAEVLLALEYLHMLGVVYRDLKPENILVR EDGHIMLTDFDLSLRCTVSPTLLKSSSNLDPARISGPCTSSSCVQPFCIEPSCEVPCF SPRFFPAAAKTKRQAKADLAAQIRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKGEGH GAAVDWWTFGIFLYELLYGRTPFKGAGNEETLANVVLQSLKFPDSPLVSFQARDLIRG LLVKEPENRLGTEKGAAEIKQHPFFEGLNWALIRCAVPPELPELYEFGVPSVMSPETE SNYLECKATGEHLEFELF" mobile_element 5188211..5188439 /note="source:CACAO_on_E33_A_scaffold_3 863 1094" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(5189947..5190383) /locus_tag="TCM_022502" /note="dbxref CacaoGD:Thecc1EG022502" mRNA complement(join(5189947..5190210,5190305..5190383)) /locus_tag="TCM_022502" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2875t1" CDS complement(join(5190041..5190210,5190305..5190359)) /locus_tag="TCM_022502" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08172.1" /translation="MKGFISFLLLSILLLANFGSEPMIVEATKTCHIFLEYLPGCTVD ECTHICSNNYGVSAVGRCVDNVECHCDHPC" mobile_element 5191850..5193827 /note="source:scaffold_5_CACTA_0584 1 1978" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5194076..5207566 /note="source:scaffold_5_CACTA_0584 1979 15469" /mobile_element_type="transposon:TIR/CACTA" gene 5211514..5215800 /locus_tag="TCM_022506" /note="dbxref CacaoGD:Thecc1EG022506" mRNA join(5211514..5212076,5212797..5212868,5213324..5213375, 5213525..5213605,5213783..5213901,5213986..5214205, 5214330..5214448,5214541..5214666,5214931..5215071, 5215245..5215800) /locus_tag="TCM_022506" /product="Monodehydroascorbate reductase, seedling isozyme" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031321t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033815001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03715t00001" CDS join(5212026..5212076,5212797..5212868,5213324..5213375, 5213525..5213605,5213783..5213901,5213986..5214205, 5214330..5214448,5214541..5214666,5214931..5215071, 5215245..5215568) /locus_tag="TCM_022506" /note="paralog of Thecc1EG031321t1" /codon_start=1 /product="Monodehydroascorbate reductase, seedling isozyme" /protein_id="EOY08173.1" /db_xref="Phytozome:GSVIVT01033815001" /db_xref="TAIR:AT3G52880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q42711" /translation="MAEKCFKYVILGGGVAAGYAAREFAKQGVQPGELAIISKEAVAP YERPALSKGYLFPEGAARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVKADLPA NTLVSAAGETFKYQILIIATGSTVIRLTDFGVQGADAKNIFYLREIDDADELIEAIKA KKNGKAVIVGGGYIGLELGAAMKINNFDVNMVYPEPWCMPRLFTSGIAAFYEGYYANK GIKIIKGTVAVGFTSDSNGEVKEVKLKDGRVLEADIVVVGVGGRPLTTLFKGQVEEEK GGIKTDACFKTSVPNVYAVGDVATFPMKLYNDMRRVEHVDHARKSAEQAVKAIKASEE GKSVDEYDYLPFFYSRSFDLAWQFYGDNVGDTVLFGDNDPQSPKAKFGSYWIKEGKVI GAFLEGGSAEENQAIAKVAKLQPTVGDLEALTNEGLSFACKI" gene complement(5215925..5217929) /locus_tag="TCM_022507" /note="dbxref CacaoGD:Thecc1EG022507" mRNA complement(join(5215925..5216804,5216941..5217167, 5217557..5217664,5217759..5217929)) /locus_tag="TCM_022507" /product="60S acidic ribosomal protein P2-4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033814001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041471t1" /inference="similar to AA sequence:Phytozome:POPTR_0009s14850.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13804t1" CDS complement(join(5216778..5216804,5216941..5217167, 5217557..5217644)) /locus_tag="TCM_022507" /note="paralog of Thecc1EG041471t1" /codon_start=1 /product="60S acidic ribosomal protein P2-4" /protein_id="EOY08174.1" /db_xref="Phytozome:POPTR_0009s14850.1" /db_xref="TAIR:AT3G44590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LXM8" /translation="MKVIAAYLLAVLGGNTCPSADDLKDILGCVGAEVEDDRIQLLLS EVKGKDITELIAAGREKLASVPSGGGVAVSAAAPGAGAAAAPAAAETKKEEKVEEKEE SDDDMGFSLFD" gene 5228441..5232035 /locus_tag="TCM_022508" /note="dbxref CacaoGD:Thecc1EG022508" mRNA join(5228441..5229021,5229117..5229231,5229397..5229462, 5229562..5229650,5229798..5229885,5230018..5230164, 5230255..5230347,5230562..5230663,5230968..5232035) /locus_tag="TCM_022508" /product="IQ calmodulin-binding motif family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g21690.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037628t1" /inference="similar to AA sequence:ricco:28779.m000142" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04420t00001_C1" CDS join(5228654..5229021,5229117..5229231,5229397..5229462, 5229562..5229650,5229798..5229885,5230018..5230164, 5230255..5230347,5230562..5230663,5230968..5231516) /locus_tag="TCM_022508" /note="dbxref ricco:28779.m000142; paralog of Thecc1EG037628t1" /codon_start=1 /product="IQ calmodulin-binding motif family protein" /protein_id="EOY08175.1" /db_xref="TAIR:AT3G52870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L7V5" /translation="MEVIETKTAVSNFDLQSKSPFYNISSSDLQNSGFRVGSEPLDFF SMDSPKEASESDTPSGNNGGGLEMPMESLIDGRDFSGSNLASSGASSHSNAAVKVQKV YRSYRTRRRLADSAVVAEELWWLVLDYARLNHSTISFFNYLKPETAVSRWNRVGLNAS KVGKGLSKDAKAQKLAFQHWIEAIDPRHRYGHNLHIYYDEWSKDDAGQPFFYWLDIGD GKEIDLKECPRSKLRQQCIKYLGPQERENYEFIVVEGKIIHKQTRNVLDTSKGLKEGK WIFVMSTSKKLYAGAKKKGMFHHSSFLAGGATLAAGRLVAEHGFLKSISAYSGHYRPT EDSLKSFLSFLKENGVNLSEVEICRAADDSDAYDEGKPSSGGTTVLVSTSSVPTERGI DNEEKNLLSESSETNQTETRNNYKRTLSGGLQSPKAEVPEKAILQRINSKKAAKSYQL GHQLSLKWSTGAGPRIGCVADYPVELRQQALEFVNLSPRTPHTRSPILSPRMPRTPTT PSAYRRPGGLAPTTAQPISYDHNADGTSAT" gene complement(5232871..5235302) /locus_tag="TCM_022509" /note="dbxref CacaoGD:Thecc1EG022509" mRNA complement(join(5232871..5233317,5233512..5233584, 5234236..5234307,5234782..5234850,5234952..5235082, 5235198..5235302)) /locus_tag="TCM_022509" /product="Histidine-containing phosphotransfer protein, putative" /inference="alignment:exonerate- protein:2:ricco:28779.m000141" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041473t1" /inference="similar to AA sequence:ricco:28779.m000141" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2927t2" CDS complement(join(5233276..5233317,5233512..5233584, 5234236..5234307,5234782..5234850,5234952..5235082, 5235198..5235266)) /locus_tag="TCM_022509" /note="dbxref ricco:28779.m000141; paralog of Thecc1EG041473t1" /codon_start=1 /product="Histidine-containing phosphotransfer protein, putative" /protein_id="EOY08176.1" /db_xref="TAIR:AT3G21510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T5M9" /translation="MIQMALAALKTQLKNFVQSMFDEGVLDSQFSQIQALQDSSNPNF VDEVITLFCTDAERIITELNKYLGYQSVDFSKLDTYVHQLKGSSSSIGAHRLKLACVN LRQASDDRSKEGCVRALNSITREYCLLRSKFQTLIQLERSIIALETNRQ" mobile_element complement(5240705..5241010) /note="source:INTACT39F_F22_scaffold_1-int 19103 19405" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5241006..5242248) /note="source:CACAO_M_E11415_F328_scaffold_2 5601 6453" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5243774..5244111) /note="source:CACAO_M_E11415_F328_scaffold_2 5103 5439" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5244122..5244666) /note="source:INTACT126_F14_scaffold_3-int 15224 15770" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5244566..5244966 /note="source:INTACT189_F49_scaffold_5-int 1442 1840" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5244914..5244979) /note="source:CACAO_M_E5899_F5_scaffold_2 24450 24518" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5251664..5251689) /note="source:CACAO_M_S_E83691_F15_scaffold_6 2754 2774" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5251690..5254525 /note="source:CACAO_M_S_E52105_F15_scaffold_5 1 2836" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5264391..5267298 /note="source:CACAO_M_S_E52106_F83_scaffold_5 1 2908" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5267306..5268104) /note="source:INTACT95_F143_scaffold_9-int 6581 7403" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5268105..5271124 /note="source:CACAO_M_S_E52113_F15_scaffold_5 1 2948" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5271125..5273195 /note="source:INTACT280_F60_scaffold_5-int 15458 17538" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5273065..5273215) /note="source:CACAO_M_E58819_F24_scaffold_9 3345 3486" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5273391..5276559) /note="source:CACAO_M_S_E16386_F9_scaffold_2 5657 8862" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5277370..5277456 /note="source:CACAO_M_S_E16386_F9_scaffold_2 2050 2142" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5279569..5280754) /note="source:CACAO_M_E70891_F369_scaffold_10 10980 12163" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5281909..5282672) /note="source:CACAO_M_E33933_F9_scaffold_4 14420 15183" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5283310..5284615) /note="source:INTACT365_F17_scaffold_9-int 200 1503" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5284616..5287718 /note="source:CACAO_M_E34464_F306_scaffold_5 1 3103" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5287719..5287918 /note="source:INTACT475_F17_scaffold_8-int 5793 5999" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5287919..5290596) /note="source:INTACT694_F17_scaffold_5-int 1527 4139" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5290597..5292448 /note="source:CACAO_M_E4753_F17_scaffold_2 1 1852" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5292449..5295415 /note="source:CACAO_M_S_E52118_F72_scaffold_5 1 2967" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5295416..5298952 /note="source:CACAO_M_E3326_F17_scaffold_1 1840 5352" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5299757..5301272 /note="source:CACAO_M_S_E52119_F17_scaffold_5 1 1516" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5305506..5305782) /note="source:CACAO_M_E24592_F195_scaffold_4 772 1037" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5307421..5313659) /note="source:CACAO_M_E72867_F9_scaffold_10 11461 17768" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5313660..5314253) /note="source:CACAO_M_E23991_F4_scaffold_4 8557 9199" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5316473..5317163 /note="source:CACAO_M_E69760_F9_scaffold_9 8957 9649" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5317152..5319496 /note="source:INTACT39F_F22_scaffold_1-int 5112 7456" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5319462..5319508) /note="source:INTACT701_F305_scaffold_10-int 1401 1442" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5319892..5320273 /note="source:CACAO_M_E227789_F230_scaffold_56 1782 2168" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5319942..5321218) /note="source:INTACT701_F305_scaffold_10-int 1 1417" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5322277..5322545 /note="source:scaffold_2_CACTA_0262 7 272" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5322995..5325598 /note="source:CACAO_M_E11656_F17_scaffold_2 1545 4167" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5324140..5329353) /note="source:CACAO_M_S_E85473_F233_scaffold_7 3470 8661" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5329341..5330603) /note="source:CACAO_M_S_E84376_F22_scaffold_6 10941 12195" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(5330357..5335391) /locus_tag="TCM_022515" /note="dbxref CacaoGD:Thecc1EG022515" mRNA complement(join(5330357..5330382,5332732..5332814, 5334934..5335391)) /locus_tag="TCM_022515" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 0.90 coverage" mobile_element complement(5331268..5331300) /note="source:CACAO_M_E10603_F306_scaffold_2 7767 7795" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5331301..5334097 /note="source:CACAO_M_E5913_F7_scaffold_2 1 2903" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(5335175..5335375) /locus_tag="TCM_022515" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08177.1" /translation="MDRRLVCGVRHVRGKGNVKQRFVSDTWIRRGKSTWGFVICLSFS SFGSRRVSQLLWDYVENGRPGD" gene 5335373..5340360 /locus_tag="TCM_022516" /note="dbxref CacaoGD:Thecc1EG022516" mRNA join(5335373..5335837,5336591..5336749,5336827..5336904, 5337002..5337196,5337265..5337342,5338411..5338476, 5338705..5338770,5338871..5340360) /locus_tag="TCM_022516" /product="Basic-leucine zipper transcription factor family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s11550.1" /inference="similar to AA sequence:ricco:28779.m000140" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc496t14" mRNA join(5335486..5335837,5336594..5336749,5336827..5336904, 5337002..5337196,5337265..5337342,5338411..5338476, 5338705..5338770,5338871..5339934) /locus_tag="TCM_022516" /product="Basic-leucine zipper transcription factor family protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s11550.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s11550.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc496t14; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc496t14" CDS join(5335544..5335837,5336591..5336749,5336827..5336904, 5337002..5337196,5337265..5337342,5338411..5338476, 5338705..5338770,5338871..5339722) /locus_tag="TCM_022516" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28779.m000140" /codon_start=1 /product="Basic-leucine zipper transcription factor family protein, putative isoform 1" /protein_id="EOY08178.1" /db_xref="TAIR:AT1G19490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTQ4" /translation="MDLERGLASSSLASTPGEAAEGAEAVTADQMEMEAAEILAALAH SKKRDAVAVAAKFSAKWGCKGKRVSRRVSSSESPPSEIGLNQVDPVQSSSDLAEQDRA AVDQQQSQVTSTPVVIESIEAEQNSELLNGSHTCAARYTSKCVGKSRQNAEKETLRLH RMLTNKESDWQMIRERQILYSIMGMPEKDVWEDRQHDQMTGNDVLIKSVKAEQNAESV KSSPTCATKYMSGGGGRSRQNLTEAEKEARRLRRILANRESARQTIRRRQALCEKLTL KVADLTRENENLKRAKELALKEYKSQESTNKHLKAQMVKAIKAEEGEAPRELKLAHQI SGPSRNYPFYFYNQHPFPPFCWPSIVQSSNPVQTQCEHQNAIVVSSSISAPTNGRLDS SHDQENPINVNGPKTPLYVVPYPWFFSLPDHGNELHLRPCCGPKNNKDETSANNRFSA GCSLKSVVHEEKYNFSLPTEVEKEAYGSIEASSNNQNCTSVRLPSDGSVQCIRYQIKE EVILPTPLCSAGPTFVVEQENTPDVNTEAARVRACHFVGALPEENQESTNYTTKKVLD AAAAAEARKRRKELTKLKNLHGRQCRTHR" CDS join(5335544..5335837,5336594..5336749,5336827..5336904, 5337002..5337196,5337265..5337342,5338411..5338476, 5338705..5338770,5338871..5339722) /locus_tag="TCM_022516" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Basic-leucine zipper transcription factor family protein, putative isoform 3" /protein_id="EOY08180.1" /db_xref="Phytozome:POPTR_0006s11550.1" /db_xref="TAIR:AT1G19490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTQ4" /translation="MDLERGLASSSLASTPGEAAEGAEAVTADQMEMEAAEILAALAH SKKRDAVAVAAKFSAKWGCKGKRVSRRVSSSESPPSEIGLNQVDPVQSSSDLAEDRAA VDQQQSQVTSTPVVIESIEAEQNSELLNGSHTCAARYTSKCVGKSRQNAEKETLRLHR MLTNKESDWQMIRERQILYSIMGMPEKDVWEDRQHDQMTGNDVLIKSVKAEQNAESVK SSPTCATKYMSGGGGRSRQNLTEAEKEARRLRRILANRESARQTIRRRQALCEKLTLK VADLTRENENLKRAKELALKEYKSQESTNKHLKAQMVKAIKAEEGEAPRELKLAHQIS GPSRNYPFYFYNQHPFPPFCWPSIVQSSNPVQTQCEHQNAIVVSSSISAPTNGRLDSS HDQENPINVNGPKTPLYVVPYPWFFSLPDHGNELHLRPCCGPKNNKDETSANNRFSAG CSLKSVVHEEKYNFSLPTEVEKEAYGSIEASSNNQNCTSVRLPSDGSVQCIRYQIKEE VILPTPLCSAGPTFVVEQENTPDVNTEAARVRACHFVGALPEENQESTNYTTKKVLDA AAAAEARKRRKELTKLKNLHGRQCRTHR" mRNA join(5335814..5335837,5336565..5336749,5336827..5336904, 5337002..5337196,5337265..5337342,5338411..5338476, 5338705..5338770,5338871..5339929) /locus_tag="TCM_022516" /product="Basic-leucine zipper transcription factor family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s11550.1" /inference="similar to AA sequence:ricco:28779.m000140" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1841t3_C2; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc496t14" CDS join(5336857..5336904,5337002..5337196,5337265..5337342, 5338411..5338476,5338705..5338770,5338871..5339722) /locus_tag="TCM_022516" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28779.m000140" /codon_start=1 /product="Basic-leucine zipper transcription factor family protein, putative isoform 2" /protein_id="EOY08179.1" /db_xref="TAIR:AT1G19490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MTQ4" /translation="MLTNKESDWQMIRERQILYSIMGMPEKDVWEDRQHDQMTGNDVL IKSVKAEQNAESVKSSPTCATKYMSGGGGRSRQNLTEAEKEARRLRRILANRESARQT IRRRQALCEKLTLKVADLTRENENLKRAKELALKEYKSQESTNKHLKAQMVKAIKAEE GEAPRELKLAHQISGPSRNYPFYFYNQHPFPPFCWPSIVQSSNPVQTQCEHQNAIVVS SSISAPTNGRLDSSHDQENPINVNGPKTPLYVVPYPWFFSLPDHGNELHLRPCCGPKN NKDETSANNRFSAGCSLKSVVHEEKYNFSLPTEVEKEAYGSIEASSNNQNCTSVRLPS DGSVQCIRYQIKEEVILPTPLCSAGPTFVVEQENTPDVNTEAARVRACHFVGALPEEN QESTNYTTKKVLDAAAAAEARKRRKELTKLKNLHGRQCRTHR" gene complement(5340366..5344406) /locus_tag="TCM_022517" /note="dbxref CacaoGD:Thecc1EG022517" mRNA complement(join(5340366..5341056,5341171..5341384, 5341463..5341571,5341729..5341953,5342039..5342142, 5342245..5342755,5343025..5343130,5343237..5343383, 5343464..5343561,5343665..5343759,5343864..5344406)) /locus_tag="TCM_022517" /product="Subtilisin-like serine endopeptidase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s11540.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041462t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s11540.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.10 coverage" CDS complement(join(5340521..5341056,5341171..5341384, 5341463..5341571,5341729..5341953,5342039..5342142, 5342245..5342755,5343025..5343130,5343237..5343383, 5343464..5343561,5343665..5343759,5343864..5343974)) /locus_tag="TCM_022517" /note="paralog of Thecc1EG041462t1" /codon_start=1 /product="Subtilisin-like serine endopeptidase family protein" /protein_id="EOY08181.1" /db_xref="Phytozome:POPTR_0006s11540.1" /db_xref="TAIR:AT5G03620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZS6" /translation="MQNIAVKMMHNLLPFAGWLCLALAATLVQGSTENERKPYIVYMG EAPHHEARISVMDKHHNLLLKAVGDENIARESKIYSYGKSINAFAARLLPDEAKRLSG VDGVISVFENTRRKLLTTRSWDFLGMHEKLKKRNAIAESNIIVGVLDTGIWPKSPSFN DKGYGPPPAKWKGKCDKGANFTGCNNKVIGARYYQLDNTYPIMEDPTPVDTDGHGTHT ASTAAGIAVKDSSLYGIAKGTARGGVPSARIAMYKVCWISGCSDMDLLAAYDDAIHDG VDLISISIGGPPKEFFHDPIAIGAFHAMRKGILTSCAGGNEGPMLATVQNVAPWIMTV AASSIDRQFTSKIKLGDGTTTSGNGINTFSMKNKMYPFTNGAHATNLTGNYTDRNISA CDYGTMSQDRVKGKIVYCLGEAGQDYTIQLLGGAGTIMATDAPQDYYFLTLTPAATVV RSKDGDKLDRYINSTKKPQAVIYKSRTVKMNAPFVASFSSRGPQLLNRNILKPDIAAP GLNILAAYTNLRSITGEPSDKRYSAFNFMSGTSMACPHASAAAAYVKSMHPDWSPAAI KSALMTTATPMKIRDKFGELSSGSGQINPIRAIQPGLIYDIDERSYISFLCKQGYNST TIGLLIGGEQKLDCSSFKPARGTDGLNYPSMHVHLNSTESRIFAVFYRTVTHVAYGNS EFKAKVTSPKGLSIAVIPNTLKFNRTHQKQSFKVLVKGGLMKNGTEILSATLEWSNKE HSVKSPILVYK" gene complement(5346659..5351061) /locus_tag="TCM_022518" /note="dbxref CacaoGD:Thecc1EG022518" mRNA complement(join(5346659..5347181,5347298..5348920, 5350834..5351061)) /locus_tag="TCM_022518" /product="Cytochrome P450 94A1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033809001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041461t1" /inference="similar to AA sequence:ricco:28779.m000137" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2365t1" CDS complement(join(5347047..5347181,5347298..5348779)) /locus_tag="TCM_022518" /note="dbxref ricco:28779.m000137; paralog of Thecc1EG041461t1" /codon_start=1 /product="Cytochrome P450 94A1" /protein_id="EOY08182.1" /db_xref="TAIR:AT2G27690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A3C8P5" /translation="MELEAYWFFQVLNASFCFLIFTFIILSLFSLLFCLLRPKLWCNC EICSAYLASSWSRQFENLCDWYTHLLKNSPGKTIHIHVLGNTITANPDNVEYMLKSNF DNFPKGKPFSMILGDFLGRGIFNVDGDSWRFQKKMASLELGKQSIRSYAFEIINCEII DRLIPLLSSVATGKEQRVLDLQDVFRRFSFDSICRFSFGLDPRCLELSLPMSKFATAF DLASKLSAERAMTASPLVWKIKRMLNIGSEKQLKKAVKIINILAKEVIRQRRKMGFLT HNDLLSRFMCTVNDETYLRDIVISFLLAGRDTVASGLTSLFWLLAKHPKVGSAIRQEA DRVIGQNQEMTSFEQMKELHYLQAAVYESMRLYPPIQFDSKFCQEDDTLPDGSFLKRG TRVTYHPYAMGRIEEIWGPDCLEFKPERWLRNGVFSPENPFKYPVFQAGFRVCLGKEM ALVELKSVALSLVRRFQIELVAPHRTPRFSPGLTATFSGGLPVLTDSSSGAAKLHSVI HDIESDVRFNGQFVLKEKSVTAYQYNFVTH" mobile_element complement(5360220..5361381) /note="source:INTACT642F_F365_scaffold_5-int 8127 9216" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5361382..5364116 /note="source:CACAO_M_E34470_F15_scaffold_5 1 2735" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5364117..5364221) /note="source:CACAO_M_S_E64023_F13_scaffold_5 7722 7822" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5364124..5365804) /note="source:scaffold_2_CACTA_0256 11256 12885" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5369533..5371116) /note="source:scaffold_2_CACTA_0267 451 2038" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5370744..5373350) /note="source:CACAO_M_E85278_F18_scaffold_10 2763 5389" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5373346..5375547 /note="source:INTACT153_F18_scaffold_9-int 3123 5326" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5375509..5375589) /note="source:CACAO_M_S_E32590_F18_scaffold_4 1 81" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5382630..5382953) /note="source:CACAO_M_S_E118676_F14_scaffold_9 12654 12947" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5385062..5385144) /note="source:INTACT30F_F12_scaffold_1-int 7400 7498" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(5387403..>5388264) /locus_tag="TCM_022521" /note="dbxref CacaoGD:Thecc1EG022521" mRNA complement(5387403..>5388264) /locus_tag="TCM_022521" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045866t1" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS complement(5387993..>5388262) /locus_tag="TCM_022521" /note="paralog of Thecc1EG045866t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08183.1" /translation="ENISTQIELDKDYFCRGHILSTLSSNLYDTFYTAKIARELWEVL EKKYGNEDESLHNFIIIKYIDFKMTNNKSVVEQAHLFRVLIHELN" mobile_element complement(5398482..5399359) /note="source:CACAO_M_E34476_F215_scaffold_5 495 1362" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 5400111..5405305 /locus_tag="TCM_022523" /note="dbxref CacaoGD:Thecc1EG022523" mRNA join(5400111..5400211,5403564..5404143,5404243..5405305) /locus_tag="TCM_022523" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS 5404552..5404848 /locus_tag="TCM_022523" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08184.1" /translation="MCFIIILNRMVIGIKFGWDCEIFCWQLIKGRIGVKDCLANKGIT SDPTATCPLFKKEREKISQLFFLCDYTWPMWQWRGQLWNVDWISYTGLLICFLS" mobile_element 5409188..5409566 /note="source:CACAO_Mutator_E1149_scaffold_5 4094 4477" /mobile_element_type="transposon:TIR/Mutator" mobile_element 5411024..5412408 /note="source:INTACT444_F216_scaffold_4-int 1498 2887" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5414011..5414072) /note="source:scaffold_3_CACTA_0382 1857 1918" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5415485..5418393 /note="source:CACAO_Mutator_E1149_scaffold_5 355 3291" /mobile_element_type="transposon:TIR/Mutator" mobile_element 5422687..5425667 /note="source:CACAO_M_E34474_F33_scaffold_5 1 2981" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5428013..5428549) /note="source:CACAO_M_E69760_F9_scaffold_9 12848 13383" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5428550..5430024 /note="source:CACAO_M_E34476_F215_scaffold_5 1 1475" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5430025..5430475 /note="source:CACAO_M_E44709_F9_scaffold_6 20008 20457" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5430476..5433423 /note="source:CACAO_M_E34478_F143_scaffold_5 1 2948" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5433424..5434021) /note="source:CACAO_M_E69760_F9_scaffold_9 11810 12410" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5434016..5436980) /note="source:CACAO_M_E13363_F273_scaffold_3 1 2963" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5437983..5439732) /note="source:CACAO_Again_on_E5_scaffold_1 1193 2944" /mobile_element_type="transposon:TIR/hAT" mobile_element 5439729..5439757 /note="source:CACAO_M_S_E86120_F51_scaffold_7 1579 1607" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5439731..5439807) /note="source:CACAO_M_S_E53867_F143_scaffold_5 1301 1379" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5439810..5441239 /note="source:CACAO_M_S_E54645_F143_scaffold_5 1531 2968" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5441240..5441378) /note="source:CACAO_Again_on_E5_scaffold_1 1 139" /mobile_element_type="transposon:TIR/hAT" gene complement(5445807..5449668) /locus_tag="TCM_022526" /note="dbxref CacaoGD:Thecc1EG022526" mRNA complement(join(5445807..5446412,5446515..5446821, 5447136..5447162,5447871..5448142,5449007..5449210, 5449297..5449442)) /locus_tag="TCM_022526" /product="GDSL-like Lipase/Acylhydrolase superfamily protein, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene30260" /inference="similar to AA sequence:ricco:29625.m000675" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13577t2" CDS complement(join(5446195..5446412,5446515..5446821, 5447136..5447162,5447871..5448142,5449007..5449210, 5449297..5449357)) /locus_tag="TCM_022526" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29625.m000675" /codon_start=1 /product="GDSL-like Lipase/Acylhydrolase superfamily protein, putative isoform 1" /protein_id="EOY08185.1" /db_xref="TAIR:AT5G03610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZS7" /translation="MDTQNLLFSLFCFFLLSLFSGQQQVVEGSRVSPFAFGPKKLFVF GDSYADTGNNRKAIASSWKFPYGITFPGKPAGRFSDGRVLTDYVAGYLGIKTPIPYRW RKELAGRLKYGVNFAYGGTGVFDTLVPEPNMTTQIDFLQQLLNDSVYTKRGLKTSVAL VSLAGNDYSAYIARNGSAAGQVDLKDIKGFPAFIESVVSQLTVNLERIHGLGVRKIAV SALQPLGCLPQSTAQFSFEQCNATENTLVNLHNQLLVQAVNNLNKKTNSTSVIVLDLY DAFWTVFNQKEAHQVSPTFENPFQPCCVGVTAGFSCGSVDEHGVKKYTLCSNPKSKFF WDTVHPTQEGWQAVYSTPAFQNSIKQLQ" mRNA complement(join(<5446385..5446412,5446515..5446821, 5447871..5448142,5449007..5449210,5449297..5449668)) /locus_tag="TCM_022526" /product="GDSL-like Lipase/Acylhydrolase superfamily protein, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene30260" /inference="similar to AA sequence:ricco:29625.m000675" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc490t8_C2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13577t2" CDS complement(join(<5446387..5446412,5446515..5446821, 5447871..5448142,5449007..5449210,5449297..5449357)) /locus_tag="TCM_022526" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29625.m000675" /codon_start=1 /product="GDSL-like Lipase/Acylhydrolase superfamily protein, putative isoform 2" /protein_id="EOY08186.1" /db_xref="TAIR:AT5G03610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZS7" /translation="MDTQNLLFSLFCFFLLSLFSGQQQVVEGSRVSPFAFGPKKLFVF GDSYADTGNNRKAIASSWKFPYGITFPGKPAGRFSDGRVLTDYVAGYLGIKTPIPYRW RKELAGRLKYGVNFAYGGTGVFDTLVPEPNMTTQIDFLQQLLNDSVYTKRGLKTSVAL VSLAGNDYSAYIARNGSAAGFPAFIESVVSQLTVNLERIHGLGVRKIAVSALQPLGCL PQSTAQFSFEQCNATENTLVNLHNQLLVQAVNNLNKKTNSTSVIVLDLYDAFWTVFNQ KEAHQVSPTFENPF" mobile_element complement(5453426..5453512) /note="source:CACAO_M_E59164_F88_scaffold_9 7676 7764" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5453614..5455483 /note="source:CACAO_M_S_E90022_F9_scaffold_8 12663 14497" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5453846..5457258 /note="source:CACAO_M_E50108_F4_scaffold_7 202 3649" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5457590..5457705) /note="source:CACAO_M_S_E99244_F4_scaffold_9 7535 7650" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5460160..5461662 /note="source:CACAO_M_S_E98886_F17_scaffold_8 1 1509" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5464632..5464909) /note="source:CACAO_M_E14081_F316_scaffold_3 245 483" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5464899..5465052) /note="source:CACAO_M_E14081_F316_scaffold_3 15271 15412" /mobile_element_type="retrotransposon:LTR/Copia" gene 5466058..5466575 /locus_tag="TCM_022527" /note="dbxref CacaoGD:Thecc1EG022527" mRNA 5466058..5466575 /locus_tag="TCM_022527" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g35160.1" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1843t1_C1" CDS 5466214..5466513 /locus_tag="TCM_022527" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08187.1" /translation="MYMRILFNNIRIPTFFTDSLQSLSFPNHVNFIAWLVHHQILLQT QHLASEFPFTRFTAAQYQYHCHEQSTVPGKLLRHCSCRRNSPHLFLFSFCFCLIV" gene complement(5467778..5471533) /locus_tag="TCM_022528" /note="dbxref CacaoGD:Thecc1EG022528" mRNA complement(join(5467778..5468220,5468306..5468441, 5468557..5468664,5468762..5468858,5469335..5469439, 5469534..5469716,5470091..5470150,5470271..5470386, 5471141..5471468)) /locus_tag="TCM_022528" /product="Uridine-ribohydrolase 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s08350.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021538t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033806001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13588t2" mRNA complement(join(5467820..5468220,5468306..5468441, 5468557..5468648,5468740..5468858,5469335..5469439, 5469534..5469716,5470091..5470150,5470271..>5470295)) /locus_tag="TCM_022528" /product="Uridine-ribohydrolase 1 isoform 2" /inference="alignment:exonerate-protein:2:frave:gene30260" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s08350.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021538t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s08350.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc492t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13588t2" CDS complement(join(5468112..5468220,5468306..5468441, 5468557..5468664,5468762..5468858,5469335..5469439, 5469534..5469716,5470091..5470150,5470271..5470386, 5471141..5471261)) /locus_tag="TCM_022528" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG021538t1" /codon_start=1 /product="Uridine-ribohydrolase 1 isoform 1" /protein_id="EOY08188.1" /db_xref="Phytozome:GSVIVT01033806001" /db_xref="TAIR:AT2G36310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SJM7" /translation="MDCEMKKNSHDGIVVNGKNEGVFGSPAKRIKLIIDTDPGIDDSM AILMAFQSPELEILGLTTIFGNVATEDATCNALLLCEIAGCPDVPVAEGSPEPLKGGR PRIADFVHGSDGLGNIFLPPQKTKKSEKSASEFLVEKVSEYPGEVSILALGPLTNLAL AIRRDSTFANKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGANIVVVGI NITTQVKMTDDDLLELKQSKGKYAQLLSNMCKFYRDWHVKSDGVYGIFLHDPVSFVAL VRPDLFTYKKGVVRVETQGICVGHTLLDQGLKRWNGSNPWTGYSPVSVAWTVNVDEVL KYIKKLLMKP" CDS complement(join(5468112..5468220,5468306..5468441, 5468557..5468648,5468740..5468858,5469335..5469439, 5469534..5469716,5470091..5470150,5470271..>5470294)) /locus_tag="TCM_022528" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG021538t1" /codon_start=1 /product="Uridine-ribohydrolase 1 isoform 2" /protein_id="EOY08189.1" /db_xref="Phytozome:POPTR_0006s08350.1" /db_xref="TAIR:AT2G36310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SJM7" /translation="ATCNALLLCEIAGCPDVPVAEGSPEPLKGGRPRIADFVHGSDGL GNIFLPPQKTKKSEKSASEFLVEKVSEYPGEVSILALGPLTNLALAIRRDSTFANKVK NIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGANIVVVGINITTQVKMTGRNL IVISLKQSKGKYAQLLSNMCKFYRDWHVKSDGVYGIFLHDPVSFVALVRPDLFTYKKG VVRVETQGICVGHTLLDQGLKRWNGSNPWTGYSPVSVAWTVNVDEVLKYIKKLLMKP" mRNA complement(join(<5468159..5468220,5468306..5468441, 5468557..5468664,5468762..5468858,5469335..5469431, 5470290..5470386,5471141..5471533)) /locus_tag="TCM_022528" /product="Uridine-ribohydrolase 1 isoform 3" /inference="alignment:exonerate-protein:2:frave:gene30260" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s08350.1" /inference="similar to AA sequence:frave:gene30260" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc484t6; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13588t2" CDS complement(join(<5468160..5468220,5468306..5468441, 5468557..5468664,5468762..5468858,5469335..5469431, 5470290..5470386,5471141..5471261)) /locus_tag="TCM_022528" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene30260" /codon_start=1 /product="Uridine-ribohydrolase 1 isoform 3" /protein_id="EOY08190.1" /db_xref="TAIR:AT2G36310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SJM7" /translation="MDCEMKKNSHDGIVVNGKNEGVFGSPAKRIKLIIDTDPGIDDSM AILMAFQSPELEILGLTTIFGNVATEDATRDSTFANKVKNIVVLGGAFFALGNVNPAA EANIYGDPEAADVVFTSGANIVVVGINITTQVKMTDDDLLELKQSKGKYAQLLSNMCK FYRDWHVKSDGVYGIFLHDPVSFVALVRPDLFTYKKGVVRVETQGICVGHTLLDQGLK RWNGSNPWTGYSPVSVAWTVN" mobile_element 5475047..5476582 /note="source:CACAO_on_E6_scaffold_1 1 1511" /mobile_element_type="transposon:TIR/hAT" mobile_element 5477819..5482771 /note="source:CACAO_PIF_E62_scaffold_2 7271 12289" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 5480680..5483084 /note="source:CACAO_Mutator_E592_scaffold_3 7211 9670" /mobile_element_type="transposon:TIR/Mutator" mobile_element 5483091..5483498 /note="source:CACAO_PIF_E62_scaffold_2 13534 13942" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 5483494..5483822 /note="source:CACAO_PIF_E62_scaffold_2 16126 16456" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 5484453..5486177 /note="source:CACAO_Mutator_E592_scaffold_3 18886 20363" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(5491088..5491351) /note="source:CACAO_on_E6_scaffold_1 2967 3199" /mobile_element_type="transposon:TIR/hAT" mobile_element 5491186..5491338 /note="source:CACAO_on_E26_scaffold_4 86 231" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(5491339..5492141) /note="source:CACAO_on_E6_scaffold_1 5 796" /mobile_element_type="transposon:TIR/hAT" gene complement(5493376..5498918) /locus_tag="TCM_022533" /note="dbxref CacaoGD:Thecc1EG022533" mRNA complement(join(5493376..5494232,5494736..5494927, 5495156..5495191,5495321..5495385,5495478..5495556, 5496167..5496241,5496849..5497364,5497797..5497955, 5498044..5498844)) /locus_tag="TCM_022533" /product="Transcription initiation factor TFIID subunit 12, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s08360.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033805001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01559t00001; inference alignment:Newbler:10:TSA:cgbaB_g01559t00001" mRNA complement(join(5493463..5494232,5494736..5494927, 5495156..5495385,5495478..5495556,5496167..5496241, 5496849..5497364,5497797..5497955,5498044..5498918)) /locus_tag="TCM_022533" /product="Transcription initiation factor TFIID subunit 12, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s08360.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033805001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3008t2; inference alignment:Newbler:10:TSA:cgbaB_g01559t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc816t7" mRNA complement(join(5493463..5494232,5494736..5494927, 5495156..5495191,5495321..5495385,5495478..5495556, 5496167..5496244,5496849..5497364,5497797..5497955, 5498044..5498918)) /locus_tag="TCM_022533" /product="Transcription initiation factor TFIID subunit 12, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s08360.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033805001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3008t1; inference alignment:Newbler:10:TSA:cgbaB_g01559t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc816t7" mRNA complement(join(5494458..5494927,5495156..5495191, 5495321..5495385,5495478..5495556,5496167..5496241, 5496849..5497364,5497797..5497955,5498044..5498918)) /locus_tag="TCM_022533" /product="Transcription initiation factor TFIID subunit 12, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s08360.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033805001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc816t11; alternateUTRof:Thecc1EG022533t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc816t7; inference alignment:Newbler:10:TSA:cgbaB_g01559t00001" CDS complement(join(5494784..5494927,5495156..5495191, 5495321..5495385,5495478..5495556,5496167..5496241, 5496849..5497364,5497797..5497955,5498044..5498652)) /locus_tag="TCM_022533" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Transcription initiation factor TFIID subunit 12, putative isoform 1" /protein_id="EOY08191.1" /db_xref="Phytozome:GSVIVT01033805001" /db_xref="TAIR:AT3G10070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HBK0" /translation="MDQQPPLPSPKAPPSATPTPTPTPTPTPIPTSSTTEPPQQPPPS LPQPPQPPQIQQPIPTPTPPSATPSTSSSPSSNPNPNPIPKPLSSPSPPPQQPPQPKP TVPAPQPRPTTATSTTITTTAFSRPWQQHSSQFTHFSSSSPSVSSSPSPTLSSQPRGS FAIGVPSSHSSPSPPTPSPSQPTSFSGSFGHSFGGGSSSNVSQARQPIQGMGMVGSSI GSSSQMRPGGLSAHHQQRPVQSSLRPPSSTNSQSPATQNFQGHGLMRVSAVGTSGSST PSTPQTTQSLNQPWLSSGAQGKPPLPPPSYRPQINSPSLQQRSHISQQHHSLPTVSQQ QHVSSPQVPQPLPSHQQQEHFGQQFSQSRVPQSLPHQQQVSRAQGSANQKPSSLAMIQ PSIVQPLNQNKAAITESDESGGRILSKRSVHDLVNQIDPSEKLDPEVEDILVDIAEDF VDSITTFGCSLAKHRKSDTLEAKDILLHLERNWHMTLPGFCGDEIKTYRKPLTNEIHK ERLAAIKKSILVTEATNTKHFGGQAAVNAKGNLGKAAANILGSPNVKIREVT" CDS complement(join(5494784..5494927,5495156..5495191, 5495321..5495385,5495478..5495556,5496167..5496241, 5496849..5497364,5497797..5497955,5498044..5498652)) /locus_tag="TCM_022533" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Transcription initiation factor TFIID subunit 12, putative isoform 1" /protein_id="EOY08192.1" /db_xref="Phytozome:GSVIVT01033805001" /db_xref="TAIR:AT3G10070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HBK0" /translation="MDQQPPLPSPKAPPSATPTPTPTPTPTPIPTSSTTEPPQQPPPS LPQPPQPPQIQQPIPTPTPPSATPSTSSSPSSNPNPNPIPKPLSSPSPPPQQPPQPKP TVPAPQPRPTTATSTTITTTAFSRPWQQHSSQFTHFSSSSPSVSSSPSPTLSSQPRGS FAIGVPSSHSSPSPPTPSPSQPTSFSGSFGHSFGGGSSSNVSQARQPIQGMGMVGSSI GSSSQMRPGGLSAHHQQRPVQSSLRPPSSTNSQSPATQNFQGHGLMRVSAVGTSGSST PSTPQTTQSLNQPWLSSGAQGKPPLPPPSYRPQINSPSLQQRSHISQQHHSLPTVSQQ QHVSSPQVPQPLPSHQQQEHFGQQFSQSRVPQSLPHQQQVSRAQGSANQKPSSLAMIQ PSIVQPLNQNKAAITESDESGGRILSKRSVHDLVNQIDPSEKLDPEVEDILVDIAEDF VDSITTFGCSLAKHRKSDTLEAKDILLHLERNWHMTLPGFCGDEIKTYRKPLTNEIHK ERLAAIKKSILVTEATNTKHFGGQAAVNAKGNLGKAAANILGSPNVKIREVT" CDS complement(join(5494784..5494927,5495156..5495385, 5495478..5495556,5496167..5496241,5496849..5497364, 5497797..5497955,5498044..5498652)) /locus_tag="TCM_022533" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Transcription initiation factor TFIID subunit 12, putative isoform 4" /protein_id="EOY08194.1" /db_xref="Phytozome:GSVIVT01033805001" /db_xref="TAIR:AT3G10070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HBK0" /translation="MDQQPPLPSPKAPPSATPTPTPTPTPTPIPTSSTTEPPQQPPPS LPQPPQPPQIQQPIPTPTPPSATPSTSSSPSSNPNPNPIPKPLSSPSPPPQQPPQPKP TVPAPQPRPTTATSTTITTTAFSRPWQQHSSQFTHFSSSSPSVSSSPSPTLSSQPRGS FAIGVPSSHSSPSPPTPSPSQPTSFSGSFGHSFGGGSSSNVSQARQPIQGMGMVGSSI GSSSQMRPGGLSAHHQQRPVQSSLRPPSSTNSQSPATQNFQGHGLMRVSAVGTSGSST PSTPQTTQSLNQPWLSSGAQGKPPLPPPSYRPQINSPSLQQRSHISQQHHSLPTVSQQ QHVSSPQVPQPLPSHQQQEHFGQQFSQSRVPQSLPHQQQVSRAQGSANQKPSSLAMIQ PSIVQPLNQNKAAITESDESGGRILSKRSVHDLVNQIDPSEKLDPEVEDILVDIAEDF VDSITTFGCSLAKHRKSDTLEAKDILLHLERNWHMTLPGFCGDEIKTYRKPVKCSLLS IVHTGDVGCAVVCKRNLTVVDLDLQLFLIVALLVMQLTNEIHKERLAAIKKSILVTEA TNTKHFGGQAAVNAKGNLGKAAANILGSPNVKIREVT" CDS complement(join(5494784..5494927,5495156..5495191, 5495321..5495385,5495478..5495556,5496167..5496244, 5496849..5497364,5497797..5497955,5498044..5498652)) /locus_tag="TCM_022533" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Transcription initiation factor TFIID subunit 12, putative isoform 3" /protein_id="EOY08193.1" /db_xref="Phytozome:GSVIVT01033805001" /db_xref="TAIR:AT3G10070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HBK0" /translation="MDQQPPLPSPKAPPSATPTPTPTPTPTPIPTSSTTEPPQQPPPS LPQPPQPPQIQQPIPTPTPPSATPSTSSSPSSNPNPNPIPKPLSSPSPPPQQPPQPKP TVPAPQPRPTTATSTTITTTAFSRPWQQHSSQFTHFSSSSPSVSSSPSPTLSSQPRGS FAIGVPSSHSSPSPPTPSPSQPTSFSGSFGHSFGGGSSSNVSQARQPIQGMGMVGSSI GSSSQMRPGGLSAHHQQRPVQSSLRPPSSTNSQSPATQNFQGHGLMRVSAVGTSGSST PSTPQTTQSLNQPWLSSGAQGKPPLPPPSYRPQINSPSLQQRSHISQQHHSLPTVSQQ QHVSSPQVPQPLPSHQQQEHFGQQFSQSRVPQSLPHQQQVSRAQGSANQKPSSLAMIQ PSIVQPLNQNKAAITESDESGGRILSKRSVHDLVNQQIDPSEKLDPEVEDILVDIAED FVDSITTFGCSLAKHRKSDTLEAKDILLHLERNWHMTLPGFCGDEIKTYRKPLTNEIH KERLAAIKKSILVTEATNTKHFGGQAAVNAKGNLGKAAANILGSPNVKIREVT" mobile_element 5499752..5502462 /note="source:CACAO_M_S_E52137_F345_scaffold_5 1 2711" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5503425..5504175) /note="source:CACAO_M_E14081_F316_scaffold_3 12828 13579" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5504276..5505493) /note="source:CACAO_M_E12297_F14_scaffold_3 7129 8346" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5505857..5506275) /note="source:CACAO_M_E53009_F42_scaffold_8 3242 3661" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(5507305..5513501) /locus_tag="TCM_022536" /note="dbxref CacaoGD:Thecc1EG022536" mRNA complement(join(5507305..5507626,5507750..5507976, 5508053..5508117,5508263..5508349,5508667..5508735, 5510632..5510683,5510827..5510909,5511125..5511201, 5511421..5511612,5512233..5512290,5512655..5512749, 5512899..5513004)) /locus_tag="TCM_022536" /product="Solute carrier family 35 member F2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033818001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020098t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033818001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc720t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc800t8" mRNA complement(join(5507374..5507976,5508053..5508121, 5508263..5508349,5508667..5508735,5510632..5510683, 5510827..5510909,5511125..5511201,5511421..5511612, 5512233..5512290,5512655..5512749,5512899..5513157)) /locus_tag="TCM_022536" /product="Solute carrier family 35 member F2 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033818001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020098t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033818001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3003t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc800t8" mRNA complement(join(5507449..5507626,5507803..5507976, 5508053..5508117,5508263..5508349,5508667..5508735, 5510632..5510683,5510827..5510909,5511125..5511201, 5511421..5511612,5512233..5512290,5512655..5512749, 5512899..5513501)) /locus_tag="TCM_022536" /product="Solute carrier family 35 member F2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033818001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020098t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033818001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc800t8" mRNA complement(join(5507569..5508117,5508263..5508349, 5508667..5508735,5510632..5510683,5510827..5510909, 5511125..5511201,5511421..5511612,5512233..5512290, 5512655..5512749,5512899..5513004)) /locus_tag="TCM_022536" /product="Solute carrier family 35 member F2 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033818001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020098t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033818001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc720t3; alternateUTRof:Thecc1EG022536t3; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc800t8" mRNA complement(join(5507602..5507626,5507803..5508117, 5508263..5508349,5508667..5508735,5510632..5510683, 5510827..5510909,5511125..5511201,5511421..5511612, 5512233..5512290,5512655..5512749,5512899..5513004)) /locus_tag="TCM_022536" /product="Solute carrier family 35 member F2 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033818001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020098t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033818001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc799t4; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc800t8" CDS complement(join(5507874..5507976,5508053..5508117, 5508263..5508349,5508667..5508735,5510632..5510683, 5510827..5510909,5511125..5511201,5511421..5511612, 5512233..5512290,5512655..5512749,5512899..5513034)) /locus_tag="TCM_022536" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG020098t1" /codon_start=1 /product="Solute carrier family 35 member F2 isoform 1" /protein_id="EOY08195.1" /db_xref="Phytozome:GSVIVT01033818001" /db_xref="TAIR:AT3G59310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6F2N6" /translation="MSWSAAGSWFKSHVTLHNLYRLFLGQVVSFVLALMSFTSSLIAS LGVDAPITQSSFTYLTLAVVYGSILLYRGQKLRIPWYWYLALGFVDVQGNYLVNKAFQ FSSITSVTLLDCWTVVWAIILTYIFIGTRYSLWQLFGAALCVLGLGLVLLSDAGVGGG DGSKPLLGDALVISGTLFFAMSNVGEEFCVKKKDRVEVISMLGLFGMLVSGVELSIFE LRSLESVTWSTDIMLAGIGYTLSGFMFYTITPFVLKLSGATMFNLSLLTSDMWAVVVR ILFYQQQVDWLYFLAFALVVVGLVIYSTTEKDPVPAPLLEDANHSVQYQVLNDENMPS RDES" CDS complement(join(5507874..5507976,5508053..5508117, 5508263..5508349,5508667..5508735,5510632..5510683, 5510827..5510909,5511125..5511201,5511421..5511612, 5512233..5512290,5512655..5512749,5512899..5512932)) /locus_tag="TCM_022536" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG020098t1" /codon_start=1 /product="Solute carrier family 35 member F2 isoform 2" /protein_id="EOY08196.1" /db_xref="Phytozome:GSVIVT01033818001" /db_xref="TAIR:AT3G59310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6F2N6" /translation="MSFTSSLIASLGVDAPITQSSFTYLTLAVVYGSILLYRGQKLRI PWYWYLALGFVDVQGNYLVNKAFQFSSITSVTLLDCWTVVWAIILTYIFIGTRYSLWQ LFGAALCVLGLGLVLLSDAGVGGGDGSKPLLGDALVISGTLFFAMSNVGEEFCVKKKD RVEVISMLGLFGMLVSGVELSIFELRSLESVTWSTDIMLAGIGYTLSGFMFYTITPFV LKLSGATMFNLSLLTSDMWAVVVRILFYQQQVDWLYFLAFALVVVGLVIYSTTEKDPV PAPLLEDANHSVQYQVLNDENMPSRDES" CDS complement(join(5508049..5508117,5508263..5508349, 5508667..5508735,5510632..5510683,5510827..5510909, 5511125..5511201,5511421..5511612,5512233..5512290, 5512655..5512749,5512899..5512932)) /locus_tag="TCM_022536" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG020098t1" /codon_start=1 /product="Solute carrier family 35 member F2 isoform 3" /protein_id="EOY08197.1" /db_xref="Phytozome:GSVIVT01033818001" /db_xref="TAIR:AT3G59310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6F2N6" /translation="MSFTSSLIASLGVDAPITQSSFTYLTLAVVYGSILLYRGQKLRI PWYWYLALGFVDVQGNYLVNKAFQFSSITSVTLLDCWTVVWAIILTYIFIGTRYSLWQ LFGAALCVLGLGLVLLSDAGVGGGDGSKPLLGDALVISGTLFFAMSNVGEEFCVKKKD RVEVISMLGLFGMLVSGVELSIFELRSLESVTWSTDIMLAGIGYTLSGFMFYTITPFV LKLSGATMFNLSLLTSDMWAVVVRILFYQQQVDWLYFLAFALVVVGLVIYSTT" CDS complement(join(5508049..5508117,5508263..5508349, 5508667..5508735,5510632..5510683,5510827..5510909, 5511125..5511201,5511421..5511612,5512233..5512290, 5512655..5512749,5512899..5512932)) /locus_tag="TCM_022536" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG020098t1" /codon_start=1 /product="Solute carrier family 35 member F2 isoform 3" /protein_id="EOY08199.1" /db_xref="Phytozome:GSVIVT01033818001" /db_xref="TAIR:AT3G59310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6F2N6" /translation="MSFTSSLIASLGVDAPITQSSFTYLTLAVVYGSILLYRGQKLRI PWYWYLALGFVDVQGNYLVNKAFQFSSITSVTLLDCWTVVWAIILTYIFIGTRYSLWQ LFGAALCVLGLGLVLLSDAGVGGGDGSKPLLGDALVISGTLFFAMSNVGEEFCVKKKD RVEVISMLGLFGMLVSGVELSIFELRSLESVTWSTDIMLAGIGYTLSGFMFYTITPFV LKLSGATMFNLSLLTSDMWAVVVRILFYQQQVDWLYFLAFALVVVGLVIYSTT" CDS complement(join(5508113..5508121,5508263..5508349, 5508667..5508735,5510632..5510683,5510827..5510909, 5511125..5511201,5511421..5511612,5512233..5512290, 5512655..5512749,5512899..5513034)) /locus_tag="TCM_022536" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG020098t1" /codon_start=1 /product="Solute carrier family 35 member F2 isoform 4" /protein_id="EOY08198.1" /db_xref="Phytozome:GSVIVT01033818001" /db_xref="TAIR:AT3G59340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6F2N6" /translation="MSWSAAGSWFKSHVTLHNLYRLFLGQVVSFVLALMSFTSSLIAS LGVDAPITQSSFTYLTLAVVYGSILLYRGQKLRIPWYWYLALGFVDVQGNYLVNKAFQ FSSITSVTLLDCWTVVWAIILTYIFIGTRYSLWQLFGAALCVLGLGLVLLSDAGVGGG DGSKPLLGDALVISGTLFFAMSNVGEEFCVKKKDRVEVISMLGLFGMLVSGVELSIFE LRSLESVTWSTDIMLAGIGYTLSGFMFYTITPFVLKLSGATMFNLSLLTSDMWAVVVR ILFYQQQAG" mobile_element complement(5513695..5514492) /note="source:scaffold_4_CACTA_0498 2968 3777" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5513816..5514801 /note="source:CACAO_Again_on_E14_scaffold_1 7009 7992" /mobile_element_type="transposon:TIR/hAT" mobile_element 5516314..5517890 /note="source:INTACT163_F158_scaffold_5-int 2452 4025" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5522111..5522592 /note="source:CACAO_Again_on_E14_scaffold_1 7258 7737" /mobile_element_type="transposon:TIR/hAT" mobile_element 5524437..5524972 /note="source:INTACT135_F42_scaffold_4-int 5805 6341" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5527437..5528271) /note="source:CACAO_M_S_E13904_F42_scaffold_2 2264 3097" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5528372..5530601 /note="source:CACAO_M_E14763_F42_scaffold_3 857 3088" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5532338..5535421 /note="source:CACAO_M_E44150_F74_scaffold_5 1512 4595" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5538559..5538684 /note="source:CACAO_M_E11662_F12_scaffold_2 6344 6472" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5538694..5538956 /note="source:CACAO_M_E86305_F7_scaffold_15 7502 7744" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5540229..5540590 /note="source:CACAO_M_E53587_F207_scaffold_8 2963 3323" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5540454..5540627 /note="source:INTACT405F_F91_scaffold_4-int 7468 7633" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5543183..5546175 /note="source:CACAO_M_S_E1847_F7_scaffold_1 1 2977" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5546236..5546892) /note="source:CACAO_M_E84927_F323_scaffold_10 2808 3447" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5546993..5547925) /note="source:CACAO_M_E52518_F323_scaffold_7 1856 2801" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5548940..5549647 /note="source:CACAO_M_E43088_F323_scaffold_5 2716 3422" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5553743..5557381 /note="source:CACAO_Mutator_E1149_scaffold_5 9750 12693" /mobile_element_type="transposon:TIR/Mutator" gene complement(5553970..5557518) /locus_tag="TCM_022540" /note="dbxref CacaoGD:Thecc1EG022540" mRNA complement(join(5553970..5554490,5555064..5555527, 5555623..5556004,5556218..5556398,5556574..5556877, 5557185..5557518)) /locus_tag="TCM_022540" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene29055" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014272t1" /inference="similar to AA sequence:frave:gene29055" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.28 coverage" CDS complement(join(5554470..5554490,5555064..5555527, 5555623..5556004,5556218..5556398,5556574..5556877, 5557185..5557377)) /locus_tag="TCM_022540" /note="dbxref frave:gene29055; paralog of Thecc1EG014272t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5ADM9" /translation="MTLEDNTACDEGNEDLFPTGEDRFDDNSDDGPDEWHDESSDEDW LYDNDILICNNVEGETEHVGGHVKLVMRLVAKTMHASSMYVQRSYLNEENIGKFGRST KYTRVLSMVCKGDLQSTSAKIIGEIMSHKFQANGVALRPKDIISEMRIQWGLECLYGK AWQAKEDVMRPTVSIDATHLKGRFKGFLFITVCKDAYECVYLVAFGIGHVEDEDSWTW FLSKLRDVIHAGAHANLMRIGPERWARAYSPARQYQMMTSNIAKCVNSCLKHARPMSI TVLIEFIRDMFQRWFHDRYDEAIKVTVPLSPWVAKQLRKRFNDAHHFVVKPINRVKFE VKDKKMGGLVNLSKKTCSCLFILCLNIEFIVFFSKCKREAIEFCADYYKTTVLVESYA GSIHSVGHPSEWDIPHHVKQIIILPPPWRGQAGRPRKRKILATGEGSRARRCLQCNRY GHNRQNCPSPFTVPSTNPTPSPSQSAPPRVRQPKPCSSYGQSDHTHNNCPIRKIMFKN ISVVTR" mobile_element 5557382..5558125 /note="source:CACAO_M_E34487_F323_scaffold_5 1 744" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5558401..5560837 /note="source:CACAO_M_E34487_F323_scaffold_5 745 3181" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5560838..5561900 /note="source:CACAO_Mutator_E1149_scaffold_5 12689 13722" /mobile_element_type="transposon:TIR/Mutator" mobile_element 5561549..5562435 /note="source:scaffold_1_CACTA_0009 12940 13830" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5561901..5562152) /note="source:CACAO_M_E33977_F20_scaffold_4 5407 6705" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 5564999..5566072 /locus_tag="TCM_022543" /note="dbxref CacaoGD:Thecc1EG022543" mRNA join(5564999..5565231,5565373..5565933) /locus_tag="TCM_022543" /product="A20/AN1-like zinc finger family protein, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene30265" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041446t1" /inference="similar to AA sequence:Phytozome:Glyma03g35180.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g12709t00001" mRNA join(5565077..5565231,5565322..5566072) /locus_tag="TCM_022543" /product="A20/AN1-like zinc finger family protein, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene30265" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041446t1" /inference="similar to AA sequence:Phytozome:Glyma03g35180.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g12709t00001; alternateUTRof:Thecc1EG022543t1; inference alignment:Newbler:10:TSA:cgbaB_g12709t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13578t1" CDS 5565395..5565892 /locus_tag="TCM_022543" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG041446t1" /codon_start=1 /product="A20/AN1-like zinc finger family protein, putative isoform 1" /protein_id="EOY08201.1" /db_xref="Phytozome:Glyma03g35180.2" /db_xref="TAIR:AT2G36320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SJM6" /translation="MAEEHRCQAPEGHRLCVNNCGFFGSPATMNLCSKCYRDFRLKEQ QEASSIKSSLSSSPTSSSTVVESVSQVPLLTLPEVNGESPVPAVEIAPATAEQRPQQQ PNRCMVCRKRVGLTGFRCKCGITFCGSHRYPENHGCSFDFKTIGREEIARANPVVKAE KLEKI" CDS 5565395..5565892 /locus_tag="TCM_022543" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG041446t1" /codon_start=1 /product="A20/AN1-like zinc finger family protein, putative isoform 1" /protein_id="EOY08202.1" /db_xref="Phytozome:Glyma03g35180.2" /db_xref="TAIR:AT2G36320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SJM6" /translation="MAEEHRCQAPEGHRLCVNNCGFFGSPATMNLCSKCYRDFRLKEQ QEASSIKSSLSSSPTSSSTVVESVSQVPLLTLPEVNGESPVPAVEIAPATAEQRPQQQ PNRCMVCRKRVGLTGFRCKCGITFCGSHRYPENHGCSFDFKTIGREEIARANPVVKAE KLEKI" mobile_element 5566962..5567103 /note="source:CACAO_Mariner_E38_scaffold_2 1325 1478" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene complement(5568107..5572191) /locus_tag="TCM_022544" /note="dbxref CacaoGD:Thecc1EG022544" mRNA complement(join(5568107..5568771,5569175..5569263, 5569510..5570078,5571189..5571480,5571578..5572191)) /locus_tag="TCM_022544" /product="Purple acid phosphatase 21" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s02480.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030941t1" /inference="similar to AA sequence:Phytozome:Glyma03g35190.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1347t1_C2" CDS complement(join(5568543..5568771,5569175..5569263, 5569510..5570078,5571189..5571480,5571578..5571916)) /locus_tag="TCM_022544" /note="paralog of Thecc1EG030941t1" /codon_start=1 /product="Purple acid phosphatase 21" /protein_id="EOY08203.1" /db_xref="Phytozome:Glyma03g35190.1" /db_xref="TAIR:AT3G52820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LXI4" /translation="MWSLLQACPTIFQLTCLTPLQSNCLHFFKFQPRVASYLKPPSLF TYFVPSSANEQLKMEKSWQNHFFPVLLTIFFFSPFPFQTSLALQSDYIRQPPGKVIVT PHHRSKSDPQQVHISLVGKDQMRITWITEDKDVPSKVEYGKVSGRYNAMAVGEHTSYH YFFYSSGKIHHVKIGPLEPGTTYYYRCGGHGPEFSFKTPPRTFPIEFVVVGDLGQTEW TASTLAHVHSKDYHVFLLPGDLSYADTQQPLWDSFGRLVEPYASRRPWMVTEGNHEIE IFPIIYPRGFKAYNARWLMPYQESGSTSNLYYSFDVAGSHIIMLGSYTDFDETSAQYK WLEADLGKVDRTKTPWVVVLLHAPWYNTNSAHKGEGESMRKAMEDLLCKARVDVVFAG HVHAYERFTRIYDNKADPCGPVYITIGDGGNREGLALTFENPTSELSLYREPSFGHGR LRILDETRAHWSWHRNNDSDSYVADEVWLESLATTKSCCTNTGERDGSKVNKDEL" mobile_element 5577361..5580640 /note="source:CACAO_M_S_E119572_F76_scaffold_9 251 3606" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5581807..5582119 /note="source:CACAO_M_E11925_F316_scaffold_2 7459 7685" /mobile_element_type="retrotransposon:LTR/Copia" gene 5582976..5587284 /locus_tag="TCM_022545" /note="dbxref CacaoGD:Thecc1EG022545" mRNA join(5582976..5583362,5584819..5585110,5585221..5585795, 5585903..5585991,5586352..5587284) /locus_tag="TCM_022545" /product="Purple acid phosphatases superfamily protein" /inference="alignment:exonerate- protein:2:ricco:29625.m000688.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030941t1" /inference="similar to AA sequence:ricco:29625.m000688" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2971t2" CDS join(5582976..5583362,5584819..5585110,5585221..5585795, 5585903..5585991,5586352..5586535) /locus_tag="TCM_022545" /note="dbxref ricco:29625.m000688; paralog of Thecc1EG030941t1" /codon_start=1 /product="Purple acid phosphatases superfamily protein" /protein_id="EOY08204.1" /db_xref="TAIR:AT3G52780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SRV6" /translation="MSSSNLVLCYIMLTDSYKMSATSNYRFVRGNTLGKKKRRNRSSN SYYWLSWHLFTCEPAFFFFTVLFLVFFDCLVLVVMAVIKGPFLVFTLATAFAGFIGCA VSYDRPLARKDISMPQPKELSPTSPQQVHISAVGPDRMRISWITESSAPAIVEYGTSP VAYSESATGSTSSYDYLVYKSGEIHDVVIGPLNPNTVYYYRLSSDSTREFSLKTPPAD FPIKFAVVGDLGQTGWTNTTLAHIGQSNYDMLLLPGDLSYADFLQPLWDSFGRLVEPL ASQRPWMVTQGNHEVEKIPIVHSTPFTAYNARWHMPFEESGSNSNLYYSFDVSGVHVI MLGSYTDFDPDSDQFKWLQADLRKIDRRKTPWIVAIIHAPWYNSNSAHQGEPESDLMK ESMEGLLYKAGVDIVFAGHVHAYERFTRVYNRKADDCGPVHITIGDGGNREGLASEYM DPMPEISMFREASFGHGQLEVLNATHAVWKWHRNDDDVSVVADTFWFRSLSSDPACKV " mobile_element 5586761..5589207 /note="source:CACAO_M_E71405_F316_scaffold_10 4798 7231" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5588864..5589259 /note="source:CACAO_M_S_E17765_F76_scaffold_3 5359 5739" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5589196..5590584) /note="source:CACAO_M_S_E122077_F328_scaffold_10 3 1388" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5590791..5592999) /note="source:CACAO_M_E49642_F328_scaffold_7 963 3187" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5592759..5593048 /note="source:CACAO_M_S_E17765_F76_scaffold_3 15473 15763" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5592971..5595039) /note="source:CACAO_M_E36147_F281_scaffold_5 1 2070" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5595040..5595736) /note="source:CACAO_M_E5627_F4_scaffold_2 12064 12782" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5595882..5596199) /note="source:CACAO_M_S_E52027_F3_scaffold_5 3811 3949" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5596048..5596209 /note="source:CACAO_M_S_E52027_F3_scaffold_5 3811 3968" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 5603948..5606687 /locus_tag="TCM_022546" /note="dbxref CacaoGD:Thecc1EG022546" mRNA join(5603948..5604133,5606304..5606687) /locus_tag="TCM_022546" /product="Mitochondrial acyl carrier protein 2" /inference="similar to AA sequence:Phytozome:GSVIVT01033824001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g08771t00001" CDS join(5603987..5604133,5606304..5606483) /locus_tag="TCM_022546" /codon_start=1 /product="Mitochondrial acyl carrier protein 2" /protein_id="EOY08205.1" /db_xref="Phytozome:GSVIVT01033824001" /translation="MAAKGAIISGARVFSQSATAYSPNTLEKHEVTSRVLDLLRSISL IDPSKVSATTGFKNDLQLVEVNMAVEEEFAVEIPDNDAQKIATTCHLMDFIAAHPHAK WDSFRG" mobile_element 5607862..5607946 /note="source:CACAO_M_S_E16543_F3_scaffold_2 4765 4839" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5608517..5608873 /note="source:CACAO_M_E29_F88_scaffold_1 3079 3441" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5608609..5608968) /note="source:CACAO_Again_on_E205_scaffold_9 4 378" /mobile_element_type="transposon:TIR/hAT" mobile_element 5609247..5609302 /note="source:CACAO_M_E49559_F88_scaffold_7 7672 7726" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5609256..5609343 /note="source:CACAO_M_S_E52027_F3_scaffold_5 3864 3952" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5609261..5609352) /note="source:CACAO_M_S_E52027_F3_scaffold_5 3874 3951" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 5610326..5614370 /locus_tag="TCM_022547" /note="dbxref CacaoGD:Thecc1EG022547" mRNA join(5610326..5610377,5613516..5614370) /locus_tag="TCM_022547" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.16 coverage" CDS 5614116..5614319 /locus_tag="TCM_022547" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08206.1" /translation="MKKKKKKKKRQGEGGRGKGCGGGDDGSNQSQPSLRILGRPSPPS FLKPPSRKTHNCPSKSSTTMPSS" gene 5614456..5616936 /locus_tag="TCM_022548" /note="dbxref CacaoGD:Thecc1EG022548" mRNA join(5614456..5614766,5616180..5616936) /locus_tag="TCM_022548" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene30271" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Newbler:10:TSA:cgbaB_g15939t00001" CDS join(5614470..5614766,5616180..5616278) /locus_tag="TCM_022548" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08207.1" /translation="MHDCCVRRESHVPFPHHKLLSLFLPFVFFFWGGGGVGVVGGSSF LSVSLPITFLLLYINIPFVHFVPHLALSFLLLLLVVRNQSFSFLGQSYLTNLLEKGHY REFEKVLFHSHGKAELKPVPAELLHNERE" mobile_element complement(5619789..5621544) /note="source:INTACT607_F3_scaffold_4-int 12104 13859" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5623147..5623202 /note="source:scaffold_3_CACTA_0382 1859 1915" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5623203..5623240) /note="source:INTACT296_F13_scaffold_9-int 13161 13236" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 5626954..5633458 /locus_tag="TCM_022551" /note="dbxref CacaoGD:Thecc1EG022551" mRNA join(5626954..5627236,5627294..5627798,5627910..5628043, 5628122..5628333,5628497..5628776,5628870..5629103, 5629632..5630212,5630880..5631321,5631664..5631902, 5632830..5632994,5633100..5633458) /locus_tag="TCM_022551" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(5627053..5627236,5627294..5627798,5627910..5628043, 5628122..5628333,5628497..5628776,5628870..5629103, 5629632..5630212,5630880..5631321,5631664..5631902, 5632830..5632994,5633100..5633312) /locus_tag="TCM_022551" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08208.1" /translation="MRDHRHRHENSRHFVRTGRDKIGGKFTRAARFNDRTNQWRWSRE EMERWRNRLFTVFVGNLLDVYLPKTKNRGIAKSAFVRYRNEWELWRAINVGKRVTIKG RSLVVKVADIARNRVEGIKEKVGPRSYRDVLRARVNDNYSVEQRPNREEDKADVTTEF VVACKESKKVSERLKELAWKMREQKDGNQAASFKSWTECSVQIAEAENDWLKSSAVGR PRAGFSPEEIQREIFDTWFEDIRPYHEWMEERRVLVWVRLEDILLHLWQKSFFQAIVK ITSKLKITLLNRVSVEGVNYWIRAFTIGIAGFINADSANNKSTMEKRKNGIAEHMVLS PAEEEEAYSDSSKEHGGVEKFLNLEKKRENKEVLKENKGVGLSTGSGPRKINKLNAED KRKMIKEVRAKQGLGEMKPNSCEVEGSKMNTMLKARTNTVVGSEARRLNSDNRFTVLR GGEVKHKDEDGRNGKEGGATVKDSVLKSVEKQSSGKKRPVQEKRVKFDDATEEVVQPR ELILKKDKGLRKDEKKRALWKLIKAEKPSMVFIQETKMESITGSLFDRLWRGDEVEGK VVEVEGRSSGILSLWQKKFFKLKECKTERNFIMLIGRVNGIDYRCGFINIYAFNDKGK RKELWDELNELMSNMEVWWIIRGDFNTVRFEDEQIGTGNVGRSSAQFDEFINYTGLVD LPLKGAKYTWCNNWQAVAFSKLDRVLIDRDSKEMIRIVTEEEVWQTVNNCDGRKAPGP DGYNMNFFKKQWRIVKGKVMEFVNHFFTMGKLEPGINNSFITLIPKVRNPVEMKDYRP INLVGIFYKIMAKILANKIKVVIDGMVGNNQFAFMEGRQLTNAVLVANELIDLIKKEK TNDTMIFYYLNLDQIRNIKKVLRIFQSMSGLKKNFAKNSLMGIDMELDIMEEWAKMIG CKNESLPSSYLRLPLGANHRSKQAAVKRELVKKGIINSADAFCPLCNDFIETVDHLFV GCKSVTSLWYDWCKEWGLAWTVWIGKNEVVFHNKVWDKELIWELIKLRVAMWVNVRWH DTTSSIIDIYRYPAVSQPDTLLELVTTAAMFR" mobile_element 5633257..5636096 /note="source:CACAO_M_E34490_F78_scaffold_5 1 2840" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 5636084..5637314 /locus_tag="TCM_022552" /note="dbxref CacaoGD:Thecc1EG022552" mRNA join(5636084..5636257,5636443..5637314) /locus_tag="TCM_022552" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is paralog medium, intron is none, protein is utrpoor_complete" CDS join(5636184..5636257,5636443..5636602) /locus_tag="TCM_022552" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08209.1" /translation="MRMVQRMDVRVKRASVVYLGMKKGRLRKWMLHIEVLKKRVVDWK IRHMLREGNREADLLANEGVGREVDLIEFYHHM" mobile_element 5639166..5642269 /note="source:CACAO_M_E34491_F15_scaffold_5 1 3097" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 5645766..5653669 /locus_tag="TCM_022554" /note="dbxref CacaoGD:Thecc1EG022554" mRNA join(5645766..5645950,5647252..5647425,5647957..5648150, 5648430..5648556,5648723..5648892,5648960..5649414, 5651573..5651895,5652143..5652280,5652690..5653669) /locus_tag="TCM_022554" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene10208" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(5645888..5645950,5647252..5647425,5647957..5648150, 5648430..5648556,5648723..5648892,5648960..5649414, 5651573..5651895,5652143..5652280,5652690..5653055) /locus_tag="TCM_022554" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08210.1" /translation="MDFVEFFVLIEKKKLKHSGNKMVIHSNPSFKEILLSSEGEKIDL EANSDDENESMDEDDTVLAKKDADFESDDEVQVGLIEYEGLPHIYFNCVMYGHTKEVC TKQTVSLASKEYSQESTQGIEAEESIYGPWMIASKRKQRRNEGNVIGKAKTNDKVNQE PDSTMEVDPSSVIQLTTTLDPSRNSMVRRKTSSSFELSRQVAALLEEEATQLMKPEVN TSLVLVSEEPTDGTNAAPMPNSENRLCTWNCHGASDKKFIRVVKDLVKSYAINMLILL EPRISGRLADGTIKQLGFDYSHRVEFVGFSGGIWCLWKENVKLHIIKNHNQCVHMTIE DKPNEFWFFTTVYGNPSPNIRCQLWEELSSFENTVTGPWLLANDFNAFLYSHEKAGGS PRDALWAKILRSKYGMGSSCLPDNIHKPGASTFWIAISQSWPQFKLNIKWALGNGIST RFWTDQWLDDILLVDAAKSIGIEIVDESSVKEYVTAEGELDLDKVVNLIPIEKEYVET LSLIQDVQYSKSMKNLSCTTLEIVPLQPLSGLDFSHRIIKLELCSAYRAELWSILKGL TVAWETGHRRIELQIDNSTAVKVINPTSTVISHNYDLIQVIKRLLMKQWVVKIRHVFR EENIVADRMANMGITQEGGFMLFDVPPPEINSFLLHDVADFHLSS" gene complement(5654207..5657881) /locus_tag="TCM_022555" /note="dbxref CacaoGD:Thecc1EG022555" mRNA complement(join(5654207..5654652,5654776..5654853, 5655257..5655319,5655542..5655613,5656010..5656121, 5656422..5656634,5656809..5656868,5657272..5657881)) /locus_tag="TCM_022555" /product="Farnesylated protein-converting enzyme 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s08340.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033827001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaL_g09579t00001" mRNA complement(join(5654214..5654652,5654776..5654856, 5655257..5655319,5655542..5655613,5656010..5656121, 5656422..5656634,5656809..5656868,5657272..>5657663)) /locus_tag="TCM_022555" /product="Farnesylated protein-converting enzyme 2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s08330.1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s08340.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033827001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g2991t2; inference alignment:Newbler:10:TSA:cgbaL_g09579t00001" CDS complement(join(5654519..5654652,5654776..5654853, 5655257..5655319,5655542..5655613,5656010..5656121, 5656422..5656634,5656809..5656868,5657272..5657706)) /locus_tag="TCM_022555" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Farnesylated protein-converting enzyme 2 isoform 1" /protein_id="EOY08211.1" /db_xref="Phytozome:GSVIVT01033827001" /db_xref="TAIR:AT2G36305.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GW19" /translation="MEGKMSLIRARELRCKVIQTKRSKIQKPPKQESSDSDPPVLPRS KPETIEPEAVDISHSLFLSPAPQAAAPGNPIMEENQGSLSKPVAVMACITMTLFYVAI LYAPTLILRLPPPQSFKNFMIRRFVCAAVSSVASVIFVPLILPISSLEASFLFGVYGI RSDHLWQAVVFPLFLTSLMYVGSLTLKSILLVNKWKQHRNQDGRPLFDCIKSTVLSFP SQMSSVASNVLFWRNFVVAPLTEELVFRACMIPLLLCGGFKAYNVIFVCPTFFSIAHL NHMMEIYSQQNYSLLKASMVVGLQLGYTVIFGSYASFLFIRTGNLVAPLVAHIFCNYM GLPVLFVQRKGLVSMAFVAGMISFAWLLFPITRPDLYNNRTNNCRCWQGYCSWS" CDS complement(join(5654519..5654652,5654776..5654856, 5655257..5655319,5655542..5655613,5656010..5656121, 5656422..5656634,5656809..5656868,5657272..>5657661)) /locus_tag="TCM_022555" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Farnesylated protein-converting enzyme 2 isoform 2" /protein_id="EOY08212.1" /db_xref="Phytozome:GSVIVT01033827001" /db_xref="TAIR:AT2G36305.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GW19" /translation="KVIQTKRSKIQKPPKQESSDSDPPVLPRSKPETIEPEAVDISHS LFLSPAPQAAAPGNPIMEENQGSLSKPVAVMACITMTLFYVAILYAPTLILRLPPPQS FKNFMIRRFVCAAVSSVASVIFVPLILPISSLEASFLFGVYGIRSDHLWQAVVFPLFL TSLMYVGSLTLKSILLVNKWKQHRNQDGRPLFDCIKSTVLSFPSQMSSVASNVLFWRN FVVAPLTEELVFRACMIPLLLCGGFKAYNVIFVCPTFFSIAHLNHMMEIYSQQNYSLL KASMVVGLQLGYTVIFGSYASFLFIRTAGNLVAPLVAHIFCNYMGLPVLFVQRKGLVS MAFVAGMISFAWLLFPITRPDLYNNRTNNCRCWQGYCSWS" gene 5658659..5660332 /locus_tag="TCM_022556" /note="dbxref CacaoGD:Thecc1EG022556" mRNA join(5658659..5659274,5659798..5660332) /locus_tag="TCM_022556" /product="Integral membrane Yip1 family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0009s15470.1" /inference="similar to AA sequence:Phytozome:POPTR_0009s15470.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc633t3_C1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc633t3_C1" mRNA join(<5658660..5659274,5659798..>5659825) /locus_tag="TCM_022556" /product="Integral membrane Yip1 family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0009s15470.1" /inference="similar to AA sequence:Phytozome:POPTR_0009s15470.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is medium, protein is partial; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc618t1_C2; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc633t3_C1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc621t2_C2" CDS join(<5658661..5659274,5659798..>5659825) /locus_tag="TCM_022556" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Integral membrane Yip1 family protein isoform 2" /protein_id="EOY08214.1" /db_xref="Phytozome:POPTR_0009s15470.1" /db_xref="TAIR:AT3G52760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SJM8" /translation="KMTKEFSVPPVVFRSGGGVNPPAGNVNQRRVPTAPFQPSRPPSS SSSAIPFMSFDIGSAASSSGSFGGTISTSGASGSASFDDEEPLLDELGIHPGQIWHKT KSILNPFRVNPTAHKDSDLSGPIFLYLSLCLFQLLAGKIQFGVILGWIVVSSIFLYIV FNMLAGRNGNLDLHTCTSVVGYCMLPVVILSAASLFIPQGSSVPRWCGCWGYWH" CDS join(5658664..5659274,5659798..5659900) /locus_tag="TCM_022556" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Integral membrane Yip1 family protein isoform 1" /protein_id="EOY08213.1" /db_xref="Phytozome:POPTR_0009s15470.1" /db_xref="TAIR:AT3G52760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SJM8" /translation="MTKEFSVPPVVFRSGGGVNPPAGNVNQRRVPTAPFQPSRPPSSS SSAIPFMSFDIGSAASSSGSFGGTISTSGASGSASFDDEEPLLDELGIHPGQIWHKTK SILNPFRVNPTAHKDSDLSGPIFLYLSLCLFQLLAGKIQFGVILGWIVVSSIFLYIVF NMLAGRNGNLDLHTCTSVVGYCMLPVVILSAASLFIPQGSSVPRWCGCWGYWHSSRQQ FIHEGKALGKPEENFLFGP" gene complement(5661845..5672633) /locus_tag="TCM_022557" /note="dbxref CacaoGD:Thecc1EG022557" mRNA complement(join(5661845..5662858,5663477..5663984, 5672382..5672633)) /locus_tag="TCM_022557" /product="Uncharacterized protein" /inference="similar to AA sequence:Phytozome:Sb10g020018.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.29 coverage" CDS complement(join(5662425..5662858,5663477..5663873)) /locus_tag="TCM_022557" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08215.1" /db_xref="Phytozome:Sb10g020018.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7XFZ5" /translation="MRETDVKKINFRTHHGHFKFLTDALSTFQTFMNDVFKQFLHKFA LIFFNDLLIYNRTWAKHILHLQIVFTLLRQHCLFLKHSKYLFAQTPISYLRHVISSRG VETNLKRWQQCFNGHNQIPFDHYEASLVSQGKEGNHWTYHDKQIFFKNKVYLPTSSSL LQAIISIIHAQCHEWCQKTLQRVSTDFYWTGMKRQVEDMVKTCEICQRNKSDHLQPTG ILQPLPIPTQVWSDISMDFINGLPPSNGKTVLLVVVDHSSKNSHFLPLAHPHSTVTVA " mobile_element complement(5667696..5668278) /note="source:INTACT257_F186_scaffold_6-int 17144 17724" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 5680841..5689709 /locus_tag="TCM_022558" /note="dbxref CacaoGD:Thecc1EG022558" mRNA join(5680841..5681513,5689627..5689709) /locus_tag="TCM_022558" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g08330.1" /inference="similar to AA sequence:ricco:29625.m000692" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.37 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3001t1" CDS 5681109..5681477 /locus_tag="TCM_022558" /note="dbxref ricco:29625.m000692" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08216.1" /translation="MASAVKEEISKHGGSSSQTQSLAEMEDEEEELFEINLEAVNSIP PPHYWEAFFTATRSALLANCLLPISDLSSAIPTVSTACSTLSREGLANIVMVAESLPG KLFGIPCFEAFGVQHKEMRA" mobile_element complement(5686687..5686862) /note="source:CACAO_M_S_E17777_F2_scaffold_3 3039 3203" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5691507..5692142) /note="source:CACAO_M_E50311_F328_scaffold_7 5828 6469" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5692427..5695100) /note="source:CACAO_M_E50311_F328_scaffold_7 3288 5858" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5703253..5703331) /note="source:scaffold_5_CACTA_0584 1911 1986" /mobile_element_type="transposon:TIR/CACTA" gene 5707008..5707945 /locus_tag="TCM_022559" /note="dbxref CacaoGD:Thecc1EG022559" mRNA 5707008..5707945 /locus_tag="TCM_022559" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS 5707557..5707757 /locus_tag="TCM_022559" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08217.1" /translation="MSRTPLILIRSASSSGERDLSGKGSPFLFAKGLCAHSHFVNILE AWVIVTVGVLCGSSLPIGNSRT" gene 5711764..5713449 /locus_tag="TCM_022560" /note="dbxref CacaoGD:Thecc1EG022560" mRNA join(5711764..5712042,5712174..5712235,5712837..5712877, 5712983..5713449) /locus_tag="TCM_022560" /product="Centroradialis" /inference="alignment:exonerate- protein:2:Phytozome:Sb08g003210.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041439t1" /inference="similar to AA sequence:Phytozome:Glyma19g37890.1" /note="quality class is strong, express is medium, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc5043t1" CDS join(5711845..5712042,5712174..5712235,5712837..5712877, 5712983..5713200) /locus_tag="TCM_022560" /note="paralog of Thecc1EG041439t1" /codon_start=1 /product="Centroradialis" /protein_id="EOY08218.1" /db_xref="Phytozome:Glyma19g37890.1" /db_xref="TAIR:AT2G27550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2WNM6" /translation="MSRAAEPLVVGRVIGDVLDSFIPSITMTVTFNNKRVFNGHEFYP STVATKPRVEIEGGDMRTFFTLVMTDPDVPGPSDPYLREHIHWIVTDIPGTTDATFGR EVVSYEIPRPNIGIHRFVFVLFKQKRRQMITSPSSRDNFSTRGFAAENDLGLPVAAVY FNAQRETAARRR" mobile_element 5717558..5718514 /note="source:CACAO_on_E545_scaffold_5 1 957" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 5721399..5721500 /note="source:CACAO_on_E33_A_scaffold_3 6657 6766" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(5724112..5726897) /note="source:CACAO_M_E71615_F87_scaffold_10 3 2775" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5726910..5729698 /note="source:CACAO_M_E71615_F87_scaffold_10 2 2775" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5729699..5729764) /note="source:INTACT58_F125_scaffold_5-int 14341 14407" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5732253..5735066 /note="source:CACAO_M_E57926_F86_scaffold_9 6290 9091" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5734435..5735145 /note="source:scaffold_4_CACTA_0498 3006 3729" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5739239..5739836) /note="source:CACAO_M_E5958_F322_scaffold_2 2212 2810" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5743812..5747114 /note="source:CACAO_M_S_E52158_F85_scaffold_5 1 3303" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5747209..5747258 /note="source:INTACT444_F216_scaffold_4-int 16840 16891" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5747261..5747304 /note="source:INTACT444_F216_scaffold_4-int 16841 16885" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5747400..5747449 /note="source:INTACT444_F216_scaffold_4-int 16841 16891" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5747540..5747591 /note="source:INTACT444_F216_scaffold_4-int 16841 16893" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5747641..5747691 /note="source:INTACT444_F216_scaffold_4-int 16841 16893" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5749966..5752042 /note="source:CACAO_LINE_E1735_scaffold_6 3 2076" /mobile_element_type="retrotransposon:LINE/L1" gene 5752090..5758398 /locus_tag="TCM_022564" /note="dbxref CacaoGD:Thecc1EG022564" mRNA join(5752090..5752289,5754817..5754902,5755657..5755813, 5756288..5756425,5757076..5757413,5757945..5758398) /locus_tag="TCM_022564" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017238t1" /inference="similar to AA sequence:Phytozome:Glyma18g44710.1" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS join(5752201..5752289,5754817..5754902,5755657..5755813, 5756288..5756425,5757076..5757413,5757945..5758240) /locus_tag="TCM_022564" /note="paralog of Thecc1EG017238t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08219.1" /db_xref="Phytozome:Glyma18g44710.1" /translation="MFSLLMGREPRRWDFLKGLIETRFFRDIRRKEGKEHVKAITLKN IKEVESTPKQAEPKVDRVTNETFRENHPNDTLDASLVIDSKRHDENVIECVNLLDAPS CVMRPQFEITLNGWRVCIDYQKLNKAIRKGHFPLSFIDQMLDRLAGKEFYCFLDGCSV RLEERKIFYSIYYASKTLTKTQMYYTTTKKELFTIVYAFDKFCAYLVGTKVIMYTDHV AIKYLIDKKDAKPRLIRWILLLQEFDLKIRNRKGMENQVTDHLSRFENDNQVDYVFKL VKALALPTNDAKVVSKFLKKKIFTKFGTQRAIINDKGNHFSNKYLEAILAKYGVKNKI AIAYHSQTSEQVEVSNREIKRILEKIVSLSRKD" gene 5759076..5761743 /locus_tag="TCM_022566" /note="dbxref CacaoGD:Thecc1EG022566" mRNA join(5759076..5759613,5760051..5761743) /locus_tag="TCM_022566" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012426t1" /note="quality class is medium-utrpoor-expresste, express is strong, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.68 coverage" CDS join(5759604..5759613,5760051..5760502) /locus_tag="TCM_022566" /note="paralog of Thecc1EG012426t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08220.1" /translation="MDRSKEWKMTKGVPLYFKANTMKNDYKLWYHFLAARLLFTKYFS DMTKDNAILLYVIVSRTSINVGQLVFNSIVQAIHSPYDGLWYPSLITTLCKKVGVIWE RSEVILHPKVPLDVGIIRRFYTHGHSTARGSSSLASRHPPLQQHPQHFSMS" mobile_element 5762667..5763734 /note="source:INTACT522_F240_scaffold_3-int 6272 7335" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 5764538..5768122 /locus_tag="TCM_022567" /note="dbxref CacaoGD:Thecc1EG022567" mRNA join(5764538..5764636,5765249..5765511,5765621..5765832, 5765967..5766231,5767249..5768122) /locus_tag="TCM_022567" /product="Alpha/beta-Hydrolases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033830001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022568t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033830001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02802t00001" CDS join(5764546..5764636,5765249..5765511,5765621..5765832, 5765967..5766231,5767249..5767557) /locus_tag="TCM_022567" /note="paralog of Thecc1EG022568t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein" /protein_id="EOY08221.1" /db_xref="Phytozome:GSVIVT01033830001" /db_xref="TAIR:AT2G36290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q84VY8" /translation="MAGVNRKISAASARAHTRRAKENTSFKLPSGIFTKILLVLSVGI LAWAYQAIQPPLPKTCGSPDGLPVTASRIKLKDGRHLAYKEHGVPRDKAKYKIVFVHG FDCCRHDAVVATTLSLEIVETLGVYIVSFDRPGYGESDPNPRRTVKSMALDIEELADQ LGLGSKFYVIGFSMGGQVIWSCLKYIPHRLAGATLVAPVVNYWWSGFPTNLSKEAYHQ QLPQDQWTLRVSHYASWLTYWWNTQKWFPSSSVIAHSTDILSSQDKELLPKIVSTRNH RALVRQQGEYESLHRDLNIGFGTWEFSPMDLDNPFPNNEGSVHLWHGDEDRLVPVTLQ RYIVQQLPWIHYHELPGAGHMFPHADGMSNNIVKALLVGEKETPS" mobile_element 5767901..5769022 /note="source:CACAO_Again_on_E27_scaffold_1 1 1073" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(5768846..5769056) /note="source:scaffold_6_CACTA_0713 626 835" /mobile_element_type="transposon:TIR/CACTA" gene 5769648..5772852 /locus_tag="TCM_022568" /note="dbxref CacaoGD:Thecc1EG022568" mRNA join(5769648..5770259,5770546..5770808,5770921..5771132, 5771257..5771521,5772512..5772852) /locus_tag="TCM_022568" /product="Catalytic, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033830001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022567t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033830001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08327t00001" CDS join(5770166..5770259,5770546..5770808,5770921..5771132, 5771257..5771521,5772512..5772811) /locus_tag="TCM_022568" /note="paralog of Thecc1EG022567t1" /codon_start=1 /product="Catalytic, putative" /protein_id="EOY08222.1" /db_xref="Phytozome:GSVIVT01033830001" /db_xref="TAIR:AT2G36290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S5A5" /translation="MAGEVNRKISAASARAHTRKSNQSTSFKLPPGIFQKILAVLFVG ILSWVYQAIQPPPPKICGSPNGPTVTAPRIKLRDRRYLAYKEHGVPRDVAKYKIIYVH GFNSGRHDAAVATTLSPEVVEELGIYIVSFDRPGYGESDPNPKRTVKSMALDIEELAD QLGLGSKFYVIGYSMGGQVIWSCLKYIPNRLAGVTLLAPAVNYWWPHFPVNISNEAFN QKTPQDQWVIRVAHYTPWLVYWWNTQKLFPASSVLAGNSDILSSQDKEIMSQISARKN FASQQVTQQGEFESLHRDLIVGQGAWEFDPLDLENPFPNNEGFVHLWHGNQDRIVPVT MNRYIAQQLPWILYHELSGAGHFFPLADGTSNAIIKALLVGEY" mobile_element 5773137..5774517 /note="source:CACAO_Mutator_E1744_scaffold_8 1 1423" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(5774511..5777470) /note="source:scaffold_4_CACTA_0503 3237 6180" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5777471..5779313 /note="source:CACAO_PIF_E119_scaffold_3 7999 9865" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 5779305..5782429 /note="source:CACAO_Mutator_E1744_scaffold_8 3561 6676" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(5782378..5782434) /note="source:CACAO_Mutator_E592_scaffold_3 7638 7691" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(5782427..5782461) /note="source:CACAO_Mutator_E1320_scaffold_6 87 121" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(5782429..5782478) /note="source:CACAO_Mutator_E1320_scaffold_6 208 257" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(5782435..5782516) /note="source:CACAO_PIF_E62_scaffold_2 13777 13858" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(5782618..5783072) /note="source:CACAO_PIF_E62_scaffold_2 16129 16589" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(5782898..5783115) /note="source:CACAO_Mutator_E1320_scaffold_6 2002 2244" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(5783124..5783196) /note="source:CACAO_Mutator_E1320_scaffold_6 208 342" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(5783214..5787229) /note="source:CACAO_Mutator_E592_scaffold_3 7211 11040" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(5786788..5788080) /note="source:CACAO_PIF_E62_scaffold_2 9384 10658" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(5788077..5789998) /note="source:CACAO_PIF_E62_scaffold_2 7094 9040" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 5790772..5791110 /note="source:scaffold_6_CACTA_0713 627 961" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5791150..5791303 /note="source:scaffold_6_CACTA_0713 7781 7937" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5791265..5791398) /note="source:CACAO_Again_on_E27_scaffold_1 742 939" /mobile_element_type="transposon:TIR/hAT" mobile_element 5791399..5791974 /note="source:scaffold_6_CACTA_0713 7566 8189" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(5791975..5792389) /note="source:CACAO_Again_on_E27_scaffold_1 123 741" /mobile_element_type="transposon:TIR/hAT" mobile_element 5793598..5796760 /note="source:INTACT1604F_F75_scaffold_10-int 2371 5568" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(5797021..5798314) /locus_tag="TCM_022573" /note="dbxref CacaoGD:Thecc1EG022573" mRNA complement(5797021..5798314) /locus_tag="TCM_022573" /product="RmlC-like cupins superfamily protein" /inference="alignment:exonerate- protein:2:ricco:29625.m000696" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044263t1" /inference="similar to AA sequence:ricco:29625.m000696" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc581t1" CDS complement(5797592..5798260) /locus_tag="TCM_022573" /note="dbxref ricco:29625.m000696; paralog of Thecc1EG044263t1" /codon_start=1 /product="RmlC-like cupins superfamily protein" /protein_id="EOY08223.1" /db_xref="TAIR:AT3G10080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SR72" /translation="MVVLKLWVLLLIVSMHGYGTLASDPDPIQDFCIPNPKFGAIGTA HLGILPCKNSSEATTDDFVFSGLKATGNFSDTGLATIPVNPGAFPGINTLGMSFVRAD LKVGGINPPHFHPRATEIAYVVQGSIYSGFVDSNNRVFARVIEQGEVMVFPRGLVHFQ MNVGEKPATIFASLNSQNPGLQKIPTAIFGSGINEKLLEKAFGLTPKQIGTMRRRFDP KTWR" gene 5801949..5807607 /locus_tag="TCM_022574" /note="dbxref CacaoGD:Thecc1EG022574" mRNA join(5801949..5802523,5804237..5805356,5806119..5806190, 5806297..5806682,5806778..5807607) /locus_tag="TCM_022574" /product="Basic-leucine zipper transcription factor family protein, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:29625.m000702" /inference="similar to AA sequence:ricco:29625.m000702" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:PASA:2:TSA:puevd3b021852t1a2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1107t9" mRNA join(5801949..5802523,5804237..5805356,5806119..5806190, 5806297..5806326,5806567..5806682,5806778..5807178, 5807361..5807603) /locus_tag="TCM_022574" /product="Basic-leucine zipper transcription factor family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29625.m000702" /inference="similar to AA sequence:ricco:29625.m000702" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1107t9" mRNA join(5802173..5802523,5804237..5805356,5806119..5806326, 5806567..5806682,5806778..5806805) /locus_tag="TCM_022574" /product="Basic-leucine zipper transcription factor family protein, putative isoform 4" /inference="alignment:exonerate- protein:2:ricco:29625.m000702" /inference="similar to AA sequence:ricco:29625.m000702" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1107t5; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1107t9" mRNA join(5802319..5802523,5804237..5805356,5806115..5806190, 5806297..5806326,5806564..5806682,5806778..5807607) /locus_tag="TCM_022574" /product="Basic-leucine zipper transcription factor family protein, putative isoform 5" /inference="alignment:exonerate- protein:2:ricco:29625.m000702" /inference="similar to AA sequence:ricco:29625.m000702" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3114t2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1107t9" mRNA join(5803719..5804109,5804237..5805356,5806119..5806190, 5806297..5806326,5806567..5806682,5806778..5806805) /locus_tag="TCM_022574" /product="Basic-leucine zipper transcription factor family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29625.m000702" /inference="similar to AA sequence:ricco:29625.m000702" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1107t3; alternateUTRof:Thecc1EG022574t1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1107t9" mRNA join(5803719..5804109,5804237..5805356,5806119..5806326, 5806567..5806673) /locus_tag="TCM_022574" /product="Basic-leucine zipper transcription factor family protein, putative isoform 4" /inference="alignment:exonerate- protein:2:ricco:29625.m000702" /inference="similar to AA sequence:ricco:29625.m000702" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc870t4; alternateUTRof:Thecc1EG022574t4; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1107t9" CDS join(5804298..5805356,5806119..5806190,5806297..5806326, 5806567..5806662) /locus_tag="TCM_022574" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29625.m000702" /codon_start=1 /product="Basic-leucine zipper transcription factor family protein, putative isoform 1" /protein_id="EOY08224.1" /db_xref="TAIR:AT2G36270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HKK4" /translation="MVITESEIGEVESSLQVDQQQKNHPFSSLGRQSSIYSLTLDEFQ HTVCEDGKNFGSMNMDEFITSIWNAEENQAINSNIYNQQSNCANKQVSSYVHLSLNET TSNNGIAKQPSLPRQGSLTLPAPLCRKTVDEVWSEMHKGQQGQGQSNNSNVENAENGT RQPTFGEMTLEDFLIKAGVREQCMLPAPPPQHQPQYGLYQSGNNAAGGPGFVSRPIMG VDSKGGFGGSAYQTMPPGGVIGDSSGYVNDCKRGSGYQPTAPPPTTVCYSGKVAAAGA YVRGQAMGVVSPMSPVSSEGMCNSQVDNAANHFGMDMGGLRGRKRIIEGPIEKVVERR QRRMIKNRESAARSRARKQAYTVELEAELDQLKQENAHLKQALEELDRKRKQQYFEER KMITQTEAQKAKEKLRIIRRNLSCPL" CDS join(5804298..5805356,5806119..5806190,5806297..5806326, 5806567..5806662) /locus_tag="TCM_022574" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29625.m000702" /codon_start=1 /product="Basic-leucine zipper transcription factor family protein, putative isoform 1" /protein_id="EOY08225.1" /db_xref="TAIR:AT2G36270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HKK4" /translation="MVITESEIGEVESSLQVDQQQKNHPFSSLGRQSSIYSLTLDEFQ HTVCEDGKNFGSMNMDEFITSIWNAEENQAINSNIYNQQSNCANKQVSSYVHLSLNET TSNNGIAKQPSLPRQGSLTLPAPLCRKTVDEVWSEMHKGQQGQGQSNNSNVENAENGT RQPTFGEMTLEDFLIKAGVREQCMLPAPPPQHQPQYGLYQSGNNAAGGPGFVSRPIMG VDSKGGFGGSAYQTMPPGGVIGDSSGYVNDCKRGSGYQPTAPPPTTVCYSGKVAAAGA YVRGQAMGVVSPMSPVSSEGMCNSQVDNAANHFGMDMGGLRGRKRIIEGPIEKVVERR QRRMIKNRESAARSRARKQAYTVELEAELDQLKQENAHLKQALEELDRKRKQQYFEER KMITQTEAQKAKEKLRIIRRNLSCPL" CDS join(5804298..5805356,5806119..5806190,5806297..5806398) /locus_tag="TCM_022574" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29625.m000702" /codon_start=1 /product="Basic-leucine zipper transcription factor family protein, putative isoform 3" /protein_id="EOY08226.1" /db_xref="TAIR:AT2G36270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HKK4" /translation="MVITESEIGEVESSLQVDQQQKNHPFSSLGRQSSIYSLTLDEFQ HTVCEDGKNFGSMNMDEFITSIWNAEENQAINSNIYNQQSNCANKQVSSYVHLSLNET TSNNGIAKQPSLPRQGSLTLPAPLCRKTVDEVWSEMHKGQQGQGQSNNSNVENAENGT RQPTFGEMTLEDFLIKAGVREQCMLPAPPPQHQPQYGLYQSGNNAAGGPGFVSRPIMG VDSKGGFGGSAYQTMPPGGVIGDSSGYVNDCKRGSGYQPTAPPPTTVCYSGKVAAAGA YVRGQAMGVVSPMSPVSSEGMCNSQVDNAANHFGMDMGGLRGRKRIIEGPIEKVVERR QRRMIKNRESAARSRARKQAYTVELEAELDQLKQENAHLKQALEELDRKRKQQVNYLT DSKCTEAGKKEDKEDAFA" CDS join(5804298..5805356,5806119..5806211) /locus_tag="TCM_022574" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29625.m000702" /codon_start=1 /product="Basic-leucine zipper transcription factor family protein, putative isoform 4" /protein_id="EOY08227.1" /db_xref="TAIR:AT2G36270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HKK4" /translation="MVITESEIGEVESSLQVDQQQKNHPFSSLGRQSSIYSLTLDEFQ HTVCEDGKNFGSMNMDEFITSIWNAEENQAINSNIYNQQSNCANKQVSSYVHLSLNET TSNNGIAKQPSLPRQGSLTLPAPLCRKTVDEVWSEMHKGQQGQGQSNNSNVENAENGT RQPTFGEMTLEDFLIKAGVREQCMLPAPPPQHQPQYGLYQSGNNAAGGPGFVSRPIMG VDSKGGFGGSAYQTMPPGGVIGDSSGYVNDCKRGSGYQPTAPPPTTVCYSGKVAAAGA YVRGQAMGVVSPMSPVSSEGMCNSQVDNAANHFGMDMGGLRGRKRIIEGPIEKVVERR QRRMIKNRESAARSRARKQAYTVELEAELDQLKQENAHLKQALVPPLLL" CDS join(5804298..5805356,5806119..5806211) /locus_tag="TCM_022574" /note="encoded by transcript variant 6; alternatively spliced; dbxref ricco:29625.m000702" /codon_start=1 /product="Basic-leucine zipper transcription factor family protein, putative isoform 4" /protein_id="EOY08229.1" /db_xref="TAIR:AT2G36270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HKK4" /translation="MVITESEIGEVESSLQVDQQQKNHPFSSLGRQSSIYSLTLDEFQ HTVCEDGKNFGSMNMDEFITSIWNAEENQAINSNIYNQQSNCANKQVSSYVHLSLNET TSNNGIAKQPSLPRQGSLTLPAPLCRKTVDEVWSEMHKGQQGQGQSNNSNVENAENGT RQPTFGEMTLEDFLIKAGVREQCMLPAPPPQHQPQYGLYQSGNNAAGGPGFVSRPIMG VDSKGGFGGSAYQTMPPGGVIGDSSGYVNDCKRGSGYQPTAPPPTTVCYSGKVAAAGA YVRGQAMGVVSPMSPVSSEGMCNSQVDNAANHFGMDMGGLRGRKRIIEGPIEKVVERR QRRMIKNRESAARSRARKQAYTVELEAELDQLKQENAHLKQALVPPLLL" CDS join(5804298..5805356,5806115..5806180) /locus_tag="TCM_022574" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:29625.m000702" /codon_start=1 /product="Basic-leucine zipper transcription factor family protein, putative isoform 5" /protein_id="EOY08228.1" /db_xref="TAIR:AT2G36270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HKK4" /translation="MVITESEIGEVESSLQVDQQQKNHPFSSLGRQSSIYSLTLDEFQ HTVCEDGKNFGSMNMDEFITSIWNAEENQAINSNIYNQQSNCANKQVSSYVHLSLNET TSNNGIAKQPSLPRQGSLTLPAPLCRKTVDEVWSEMHKGQQGQGQSNNSNVENAENGT RQPTFGEMTLEDFLIKAGVREQCMLPAPPPQHQPQYGLYQSGNNAAGGPGFVSRPIMG VDSKGGFGGSAYQTMPPGGVIGDSSGYVNDCKRGSGYQPTAPPPTTVCYSGKVAAAGA YVRGQAMGVVSPMSPVSSEGMCNSQVDNAANHFGMDMGGLRGRKRIIEGPIEKVVERR QRRMIKNRESAARSRARKQTGIYSRARSRIGPIETRECPS" mobile_element complement(5807706..5808168) /note="source:scaffold_9_CACTA_0932 706 1170" /mobile_element_type="transposon:TIR/CACTA" gene complement(5808153..>5809187) /locus_tag="TCM_022575" /note="dbxref CacaoGD:Thecc1EG022575" mRNA complement(5808153..>5809187) /locus_tag="TCM_022575" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046381t1" /inference="similar to AA sequence:TAIR:ATCG00280.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.11 coverage" CDS complement(5808838..>5809185) /locus_tag="TCM_022575" /note="paralog of Thecc1EG046381t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08230.1" /db_xref="TAIR:ATCG00280.1" /translation="VGLGGKVIDTFPYFISGVLHLISSALLGFGSICHALLRPKTLEE SFPFFGYVWKDRNKMTTILDIHLILLGIGAFLLVFKALYFGGIYDTWDLGGGDVRKIT NFTLSPSVILVIY" mobile_element 5810023..5810278 /note="source:scaffold_7_CACTA_0789 1881 2137" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5810278..5811018 /note="source:INTACT674_F296_scaffold_6-int 4599 5323" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 5810318..5811304 /locus_tag="TCM_022576" /note="dbxref CacaoGD:Thecc1EG022576" mRNA 5810318..5811304 /locus_tag="TCM_022576" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.66 coverage" CDS 5810874..5811086 /locus_tag="TCM_022576" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08231.1" /translation="MNANPNTSKSFLLKIFLRTLPSYWWSSDVSFHLGSLPMKLTFAS FLGKYIILIYLKLETLEFRVKTLPLY" mobile_element complement(5811020..5812493) /note="source:INTACT345_F202_scaffold_1-int 890 2343" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5812754..5813696) /note="source:CACAO_hAT_E731_scaffold_2 37 978" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(5813985..5815073) /note="source:scaffold_10_CACTA_0130 8736 9434" /mobile_element_type="transposon:TIR/CACTA" gene complement(5815904..5825967) /locus_tag="TCM_022577" /note="dbxref CacaoGD:Thecc1EG022577" mRNA complement(join(5815904..5816319,5818155..5818285, 5818364..5818551,5825841..5825967)) /locus_tag="TCM_022577" /product="Iron-sulfur cluster biosynthesis family protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037848t3" /inference="similar to AA sequence:Phytozome:Glyma03g35280.1" /note="quality class is strong-utrpoor, express is strong, homology is paralog strong, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc2850t3_C2" CDS complement(join(5816217..5816319,5818155..5818285, 5818364..5818414)) /locus_tag="TCM_022577" /note="paralog of Thecc1EG037848t3" /codon_start=1 /product="Iron-sulfur cluster biosynthesis family protein" /protein_id="EOY08232.1" /db_xref="Phytozome:Glyma03g35280.1" /db_xref="TAIR:AT2G16710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LBM4" /translation="MLRLAAATAYPTPSITPNCLTEEKGKFDELIEDKGVRILIDPKA LMHVIGTKMDFVDDKLRSEFIFINPNSKGLCGCGGESFMTTAGTSGGAAK" mobile_element complement(5817051..5817166) /note="source:scaffold_4_CACTA_0502 1 119" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5818826..5818880 /note="source:CACAO_M_E42343_F106_scaffold_5 6708 6761" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5825259..5828595 /note="source:INTACT8_F106_scaffold_3-int 1 3351" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5828682..5829292 /note="source:CACAO_M_E14113_F106_scaffold_3 5694 6287" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5832363..5836809) /note="source:CACAO_M_S_E51722_F106_scaffold_4 1 4456" /mobile_element_type="retrotransposon:LTR/Copia" gene 5837950..5846024 /locus_tag="TCM_022580" /note="dbxref CacaoGD:Thecc1EG022580" mRNA join(5837950..5838318,5839780..5839937,5840390..5841150, 5841883..5842182,5842948..5843038,5843620..5843744, 5844474..5844566,5845193..5845258,5845351..5846024) /locus_tag="TCM_022580" /product="Tubulin/FtsZ family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29625.m000705" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041418t1" /inference="similar to AA sequence:ricco:29625.m000705" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13586t2" mRNA join(5839584..5839937,5840390..5841150,5841883..5842182, 5842948..5843038,5843620..5843749,5844542..5844566, 5845079..>5845108) /locus_tag="TCM_022580" /product="Tubulin/FtsZ family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29625.m000705" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041418t3" /inference="similar to AA sequence:ricco:29625.m000705" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc864t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13586t2" CDS join(5840503..5841150,5841883..5842182,5842948..5843038, 5843620..5843744,5844474..5844566,5845193..5845258, 5845351..5845479) /locus_tag="TCM_022580" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29625.m000705; paralog of Thecc1EG041418t1" /codon_start=1 /product="Tubulin/FtsZ family protein isoform 1" /protein_id="EOY08233.1" /db_xref="TAIR:AT3G52750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O82533" /translation="MVAAISPYFTPSDARPMGVLNVLGGRVSMDNLLGRVGCLKMCDG KIGCSSAGQRSTMPHCRCSANSQSVSPYQNKDPFLNMHPEVSMLRGEGNNTVTNPRKD SSSGSVTESLGDMSSSSNYNEAKIKVIGVGGGGSNAVNRMIESAMKGVEFWIVNTDVQ AMKMSPVFPEHRLQIGQELTRGLGAGGNPEIGMNAAKESKESIEEALYGSDMVFVTAG MGGGTGTGGAPVIAGVAKSLGILTVGIVTTPFSFEGRRRAVQAQEGIAALRENVDTLI VIPNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMAN AGSSLMGIGTATGKTRARDAALNAIQSPLLDLGIERATGIVWNITGGSDLTLFEVNAA AEVIYDLVDPTANLIFGAVIDPSLSGQVSITLIATGFKRQEESEGRPLQAGQLAQGDI GLGINRRPSFSEGGSVEIPEFLKKKGRSRYPRA" CDS join(5840503..5841150,5841883..5842182,5842948..5843038, 5843620..5843749,5844542..5844566,5845079..>5845108) /locus_tag="TCM_022580" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29625.m000705; paralog of Thecc1EG041418t3" /codon_start=1 /product="Tubulin/FtsZ family protein isoform 2" /protein_id="EOY08234.1" /db_xref="TAIR:AT2G36250.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O82533" /translation="MVAAISPYFTPSDARPMGVLNVLGGRVSMDNLLGRVGCLKMCDG KIGCSSAGQRSTMPHCRCSANSQSVSPYQNKDPFLNMHPEVSMLRGEGNNTVTNPRKD SSSGSVTESLGDMSSSSNYNEAKIKVIGVGGGGSNAVNRMIESAMKGVEFWIVNTDVQ AMKMSPVFPEHRLQIGQELTRGLGAGGNPEIGMNAAKESKESIEEALYGSDMVFVTAG MGGGTGTGGAPVIAGVAKSLGILTVGIVTTPFSFEGRRRAVQAQEGIAALRENVDTLI VIPNDKLLTAVSQSTPVTEAFNLADDILRQGVRGISDIITIPGLVNVDFADVRAIMAN AGSSLMGIGTATGKTRARDAALNAIQSPLLDLGIERATGIVWNITGGSDLTLFEVMID PSLSGQAIKQGHVFTD" gene complement(5846074..5848695) /locus_tag="TCM_022581" /note="dbxref CacaoGD:Thecc1EG022581" mRNA complement(5846074..5848695) /locus_tag="TCM_022581" /product="Pentatricopeptide repeat superfamily protein" /inference="alignment:exonerate-protein:2:frave:gene30288" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029817t1" /inference="similar to AA sequence:frave:gene30288" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.81 coverage" CDS complement(5846517..5848598) /locus_tag="TCM_022581" /note="dbxref frave:gene30288; paralog of Thecc1EG029817t1" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein" /protein_id="EOY08235.1" /db_xref="TAIR:AT4G33170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B8LQA8" /translation="MNFQKPQAFVNLMLKDSKSLARIVQNLAQTKQLHKGKQLHCQLI SSGYRLCTFLTNHLLNMYSKCGQLDYSIKLFEKMSQRNLVSWTAMVTGFSQNLYYLEA ITTFSQMRIAGENPTQFAFSSVIKACASVGLVQFGKQMHCLALKFGFGFDIFVGSNLV DMYSKCGVMVNAYKVFQEMECKDEILWTALIDGYAKNALFGDALLAYKSMVNEGIAID KFVLCSTLSACAALKVLNFGKCLHSLIVKKGLDLEISVGNALTDMYSKVEDMDSALNV FGIDSECRNVVSCSSLIDGYVEMDRVEDALSVFVELQRRGIESNEFTFSSLIKACASQ ASLEQGAQLHAQVIKFNFDGNPFVSSGLVDMYGKCGLLDDSIQVFDEIENANEIAWNS MLGVFAQHGLGKDAIEIFNRMKNEGVEPNAITFVSLLRGCSHSGLVEEGLSFFYAMEK SYGAVPGEEHYSCVIDLLARAGKLKEAEDFMSKMPFEPNAFGWCSLLGACKIHGDKKR GKVAAEKLMQLEPANSGAPVLLSNIYAKEQQWEEVRTLRKMMQDGNVKKLPGYSWVNV GNETHIFGVEDWSHHQMKAIYEKLDVLSDQIKKAGYVPCTDSIPLDTDVSVKEKILKH HSERIAIAFALISMPSGKPIIVKKNLRVCVDCHSAIKYISKVTGRKIIVRDNSRFHHF SEGLCSCGDFW" gene 5852245..5852910 /locus_tag="TCM_022582" /note="dbxref CacaoGD:Thecc1EG022582" mRNA 5852245..5852910 /locus_tag="TCM_022582" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g37950.1" /inference="similar to AA sequence:ricco:29625.m000706" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g15611t00001" CDS 5852362..5852871 /locus_tag="TCM_022582" /note="dbxref ricco:29625.m000706" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08236.1" /db_xref="TAIR:AT3G52740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SRX3" /translation="MNVEPTKMTHHTVQPGEQAHPQLPEEPKASDYQQPDDVVHVETG SSEMETCQYDSDRNGREINNEGSSLQGQSSSAPPPVVVDLTKEAMRAQELEEENGRER LRRHRIEVAGRVWIPEIWGQEQLLKDWIDCSAFEASLVPSGIMSARAALIEEGRTANS GRFRIENSC" gene complement(5853428..5858455) /locus_tag="TCM_022583" /note="dbxref CacaoGD:Thecc1EG022583" mRNA complement(join(5853428..5853869,5854493..5854576, 5854813..5854882,5855662..5855724,5856334..5856405, 5856550..5856615,5856823..5856887,5857023..5857241, 5857549..5857695,5858017..5858405)) /locus_tag="TCM_022583" /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29625.m000707" /inference="similar to AA sequence:ricco:29625.m000707" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3055t3; alternateUTRof:Thecc1EG022583t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13587t2" mRNA complement(join(5853544..5853869,5854493..5854576, 5854813..5854882,5855662..5855724,5856334..5856405, 5856550..5856615,5856823..5856887,5857023..5857241, 5857549..5857695,5858017..5858455)) /locus_tag="TCM_022583" /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29625.m000707" /inference="similar to AA sequence:ricco:29625.m000707" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13587t2" CDS complement(join(5853798..5853869,5854493..5854576, 5854813..5854882,5855662..5855724,5856334..5856405, 5856550..5856615,5856823..5856887,5857023..5857241, 5857549..5857695,5858017..5858211)) /locus_tag="TCM_022583" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29625.m000707" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /protein_id="EOY08237.1" /db_xref="TAIR:AT2G26060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80990" /translation="MDLLDGNLELKEVQKLQGHTDRVWSLAWNPATTATDVPAVFASC SGDKTVRIWEQSPSTRSWDCKAVLEETHTRTVRSCAWSPSGKLLATASFDATTAIWEN VGGDFECVSTLEGHENEVKSLCWNASGSLLATCGRDKTVWIWEVMPGNEFECLQVLQG HTQDVKMVQWHPTMDILFSCSYDNTVKVWWSEDADGDWSCVQTLGESSNGHSSTVWSL SFNAKGDKLVTCSDDLTLKIWEADIIRMQSGDGYAPWNHLCTLSGYHDRTVFSVHWSR DGIIASGAADDAIRLFVESKDGLMNGPSYQLLFKKEKAHDMDINSVQWCPGEKHLLAS ASDDGTIKLWELATLP" CDS complement(join(5853798..5853869,5854493..5854576, 5854813..5854882,5855662..5855724,5856334..5856405, 5856550..5856615,5856823..5856887,5857023..5857241, 5857549..5857695,5858017..5858211)) /locus_tag="TCM_022583" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29625.m000707" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /protein_id="EOY08238.1" /db_xref="TAIR:AT2G26060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80990" /translation="MDLLDGNLELKEVQKLQGHTDRVWSLAWNPATTATDVPAVFASC SGDKTVRIWEQSPSTRSWDCKAVLEETHTRTVRSCAWSPSGKLLATASFDATTAIWEN VGGDFECVSTLEGHENEVKSLCWNASGSLLATCGRDKTVWIWEVMPGNEFECLQVLQG HTQDVKMVQWHPTMDILFSCSYDNTVKVWWSEDADGDWSCVQTLGESSNGHSSTVWSL SFNAKGDKLVTCSDDLTLKIWEADIIRMQSGDGYAPWNHLCTLSGYHDRTVFSVHWSR DGIIASGAADDAIRLFVESKDGLMNGPSYQLLFKKEKAHDMDINSVQWCPGEKHLLAS ASDDGTIKLWELATLP" mRNA complement(join(5855577..5855724,5856334..5856405, 5856550..5856615,5856823..5856887,5857023..5857241, 5857549..5857695,5858017..5858436)) /locus_tag="TCM_022583" /product="Transducin/WD40 repeat-like superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:29625.m000707" /inference="similar to AA sequence:ricco:29625.m000707" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1263t5; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13587t2" CDS complement(join(5855658..5855724,5856334..5856405, 5856550..5856615,5856823..5856887,5857023..5857241, 5857549..5857695,5858017..5858211)) /locus_tag="TCM_022583" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29625.m000707" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 3" /protein_id="EOY08239.1" /db_xref="TAIR:AT2G26060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80990" /translation="MDLLDGNLELKEVQKLQGHTDRVWSLAWNPATTATDVPAVFASC SGDKTVRIWEQSPSTRSWDCKAVLEETHTRTVRSCAWSPSGKLLATASFDATTAIWEN VGGDFECVSTLEGHENEVKSLCWNASGSLLATCGRDKTVWIWEVMPGNEFECLQVLQG HTQDVKMVQWHPTMDILFSCSYDNTVKVWWSEDADGDWSCVQTLGESSNGHSSTVWSL SFNAKGDKLVTCSDDLTLKIWEADIIRMQSGDGYAPWNHLCTLSGYHDRTVFSVHWSR " mobile_element 5860267..5861821 /note="source:CACAO_on_SS_E90_scaffold_6 6958 8507" /mobile_element_type="transposon:TIR/Mutator" mobile_element 5862042..5862459 /note="source:INTACT556_F252_scaffold_2-int 1 405" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5862452..5863682) /note="source:INTACT642F_F365_scaffold_5-int 17486 18732" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5866465..5877346 /note="source:INTACT556_F252_scaffold_2-int 4715 18427" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5877577..5877838 /note="source:INTACT666_F293_scaffold_9-int 16221 16458" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5877688..5879040) /note="source:INTACT58_F125_scaffold_5-int 14733 15717" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5883094..5883210) /note="source:INTACT261_F189_scaffold_2-int 12422 12532" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5883636..5883744) /note="source:scaffold_5_CACTA_0586 11451 11561" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5888769..5888862 /note="source:CACAO_M_E11415_F328_scaffold_2 3295 3388" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5890817..5891010) /note="source:CACAO_on_E732_scaffold_9 2373 2569" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(5891104..5892930) /note="source:CACAO_on_E732_scaffold_9 538 2389" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 5894658..5896632 /locus_tag="TCM_022588" /note="dbxref CacaoGD:Thecc1EG022588" mRNA join(5894658..5894822,5895093..5895140,5896294..5896632) /locus_tag="TCM_022588" /product="Ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s20010.1" /inference="similar to AA sequence:frave:gene30292" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g14586t00001" CDS join(5894700..5894822,5895093..5895140,5896294..5896344) /locus_tag="TCM_022588" /note="dbxref frave:gene30292" /codon_start=1 /product="Ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein" /protein_id="EOY08240.1" /db_xref="TAIR:AT3G52730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LXJ2" /translation="MDYAARRRNQGGLFEGLYRVIMRRNSVYVTFVIAGAFLGERAVD YGVHKLWEYNNVGKRYEDIPVLGQRQSEE" mobile_element 5897268..5897504 /note="source:CACAO_on_E33_A_scaffold_3 7679 7916" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 5898821..5900870 /locus_tag="TCM_022589" /note="dbxref CacaoGD:Thecc1EG022589" mRNA join(5898821..5898849,5898970..5899012,5899194..5899413, 5899565..5899730,5900216..5900421,5900632..5900870) /locus_tag="TCM_022589" /product="Ribosomal protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g39270.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041412t1" /inference="similar to AA sequence:Phytozome:Glyma13g39270.2" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g11257t00001_C2" CDS join(5899008..5899012,5899194..5899413,5899565..5899730, 5900216..5900421,5900632..5900685) /locus_tag="TCM_022589" /note="paralog of Thecc1EG041412t1" /codon_start=1 /product="Ribosomal protein" /protein_id="EOY08241.1" /db_xref="Phytozome:Glyma13g39270.2" /db_xref="TAIR:AT1G08360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B4FN28" /translation="MSKLQSDAVREAISTIVGDSKEKQRKFVETIELQIGLKNYDPQK DKRFSGAVKLPHIPRPKMKICMLGDALHVEEAEKIGLDWMDVEALKKLNKNKKLVKKL AKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKK VLCMGVAVGNCSMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLHLKSTMGRPQRIY" gene complement(5901366..5904665) /locus_tag="TCM_022590" /note="dbxref CacaoGD:Thecc1EG022590" mRNA complement(join(5901366..5901771,5903263..5903371, 5903486..5903616,5904372..5904665)) /locus_tag="TCM_022590" /product="Iron-sulfur cluster biosynthesis family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g22100.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s08450.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g10504t00001" mRNA complement(join(5901386..5901771,5903263..5903371, 5903486..5903629,5904372..5904544)) /locus_tag="TCM_022590" /product="Iron-sulfur cluster biosynthesis family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g22100.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s08450.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g02708t00002; inference alignment:Newbler:10:TSA:cgbaP1_g10504t00001" CDS complement(join(5901706..5901771,5903263..5903371, 5903486..5903616,5904372..5904563)) /locus_tag="TCM_022590" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Iron-sulfur cluster biosynthesis family protein isoform 1" /protein_id="EOY08242.1" /db_xref="Phytozome:POPTR_0006s08450.1" /db_xref="TAIR:AT5G03905.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HBK7" /translation="MSRSLIQRISPFFIARIKQNHKLLRSSSYSHNYSSSALHEASPE SSESPSSSLDAIRIADNCVKRMKELQASEESSHEKLLRLSVETGGCSGFQYVFDLDDK TNPDDRVFEREGVKLVVDNISYDFVKGATVDYVEELIRSAFLVTTNPSAVGGCSCKSS FMVKQ" CDS complement(join(5901706..5901771,5903263..5903371, 5903486..5903629,5904372..5904448)) /locus_tag="TCM_022590" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Iron-sulfur cluster biosynthesis family protein isoform 2" /protein_id="EOY08243.1" /db_xref="Phytozome:POPTR_0006s08450.1" /db_xref="TAIR:AT5G03905.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HBK7" /translation="MRLLLNLLNLHLLLSMLFASLIIASRDALQRMKELQASEESSHE KLLRLSVETGGCSGFQYVFDLDDKTNPDDRVFEREGVKLVVDNISYDFVKGATVDYVE ELIRSAFLVTTNPSAVGGCSCKSSFMVKQ" gene 5904854..5905567 /locus_tag="TCM_022591" /note="dbxref CacaoGD:Thecc1EG022591" mRNA join(5904854..5904911,5905008..5905567) /locus_tag="TCM_022591" /product="GCN5-related N-acetyltransferase" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033843001" /inference="similar to AA sequence:Phytozome:GSVIVT01033843001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g16076t00001" CDS 5905025..5905498 /locus_tag="TCM_022591" /codon_start=1 /product="GCN5-related N-acetyltransferase" /protein_id="EOY08244.1" /db_xref="Phytozome:GSVIVT01033843001" /db_xref="TAIR:AT5G15770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B3U2A5" /translation="MENTNSLKEEHRFQVRKLELSDKSKGFIELLQQLTVCDSVSDKE FEDRFKEISTYGDDHLVCVIEDDFSGKIIATGSVFIEKKFIRNCGKVGHIEDIVVDGN ARGLQLGKKIVGFLLDHARSMGCYKVILDCSVDNKGFYEKCGFKQKEIQMVKYFV" gene 5906410..5912450 /locus_tag="TCM_022592" /note="dbxref CacaoGD:Thecc1EG022592" mRNA join(5906410..5906546,5909010..5909089,5909526..5909661, 5909761..5910486,5910834..5911032,5911997..5912450) /locus_tag="TCM_022592" /product="Syntaxin/t-SNARE family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s14560.1" /inference="similar to AA sequence:ricco:29625.m000713" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3059t1" CDS join(5906541..5906546,5909010..5909089,5909526..5909661, 5909761..5910486,5910834..5911032,5911997..5912022) /locus_tag="TCM_022592" /note="dbxref ricco:29625.m000713" /codon_start=1 /product="Syntaxin/t-SNARE family protein, putative" /protein_id="EOY08245.1" /db_xref="TAIR:AT1G27700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GV63" /translation="MSRMGSSLLQWESDPLFSAAEVVQDSADRMESIFRLLLHDQSLV QSNHSDPKLLTSIEYHRRDLVTILETAKWQLEDFERAVSSSARMDQSHAREDVISRHK QFIRAISEQINHVEKSLEKMSMGNSLKNSEWGNLNKQDRDGLALFLSGGNHNEHNHRY DLDDSDILKRFLEPATASCSTDAGLVGNECGEIEEVTTNGVAYGSHYYDSMKENNLRK VGSHYSIKLGLDAVDSFQESSCNRNAGGGSWDLEASEVKPKSFFQENKSRGSSTSPFR FFNNLWAAYRSRVPSNYTKRLKDGEEEHSPSYIDASRATQVQCIGLRSAPGDHGLQGL HGFLVKVMHLRRTLGACNARCDRFSYLVKFNRRSVQMILTIVFAFTLLGILVFHVT" mobile_element 5908363..5908459 /note="source:CACAO_M_E34409_F73_scaffold_5 2250 2350" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(5912467..5919127) /locus_tag="TCM_022593" /note="dbxref CacaoGD:Thecc1EG022593" mRNA complement(join(5912467..5912525,5912755..5913269, 5913629..5913801,5914393..5914536,5915225..5915291, 5915377..5915463,5915567..5915709,5915944..5916009, 5916666..5916755,5916893..5916958,5917060..5917135, 5917335..5917415,5917514..5917614,5917713..5917820, 5918579..5919127)) /locus_tag="TCM_022593" /product="Iron-sulfur cluster biosynthesis family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29625.m000714" /inference="similar to AA sequence:ricco:29625.m000714" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:PASA:2:TSA:puevd3b021871t1a2; alternateUTRof:Thecc1EG022593t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3091t2" mRNA complement(join(5912467..5912525,5912755..5913320, 5913629..5913801,5914393..5914536,5915225..5915291, 5915377..5915463,5915567..5915709,5915944..5916009, 5916666..5916755,5916893..5916958,5917060..5917135, 5917335..5917415,5917514..5917614,5917713..5917820, 5918579..5919127)) /locus_tag="TCM_022593" /product="Iron-sulfur cluster biosynthesis family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29625.m000714" /inference="similar to AA sequence:ricco:29625.m000714" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3091t2" CDS complement(join(5913658..5913801,5914393..5914536, 5915225..5915291,5915377..5915463,5915567..5915709, 5915944..5916009,5916666..5916755,5916893..5916958, 5917060..5917135,5917335..5917415,5917514..5917614, 5917713..5917820,5918579..5918968)) /locus_tag="TCM_022593" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29625.m000714" /codon_start=1 /product="Iron-sulfur cluster biosynthesis family protein isoform 1" /protein_id="EOY08246.1" /db_xref="TAIR:AT5G03900.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GW20" /translation="MASISTCLTLLPKSRLFTTKPSVSLKFFPGIQTLTSCPTSPRKT GNFFRPRVSFPVVKASLDVGSNSIRPGGAVETDKLPSDVRKRTMEAVDALGGRVTIGD VSSKAGLNLNQAQKALQALASDTNGFLEVSDEGDVLYVFPKDYRAKLAAKSLRIRFEP WVDKAKAALEYLVRVSFGTALIASIVLVYTTIIALITSRSDEDNRGRRGRSYDTGFTF YFSPTDLFWYWDPYYYRRRRLRTDDDEKMNFIESVFSFVFGDGDPNQGIEEERWKLIG QYIASNGGVVAAEELAPYLDLQTTNGAMSDESYVLPVLLRFDGQPEIDEEGNILYRFP SLQRTASSQRSGRKEYVGRRWSDWVGGIEKFFREKKWQFSKTSSSETAMVFGLGGINL FGVIILGAMLKDTAAVTPSGFIKFVTDIFPLLQIYAGSFFAIPLLRWFIIRQRNTDIE KRNQVREQFARALELPDLSLRRKLLSARDMAQKTVIGPDRIVYSTDRDLVEQDYEARE WDRRFREIEKSE" CDS complement(join(5913658..5913801,5914393..5914536, 5915225..5915291,5915377..5915463,5915567..5915709, 5915944..5916009,5916666..5916755,5916893..5916958, 5917060..5917135,5917335..5917415,5917514..5917614, 5917713..5917820,5918579..5918968)) /locus_tag="TCM_022593" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29625.m000714" /codon_start=1 /product="Iron-sulfur cluster biosynthesis family protein isoform 1" /protein_id="EOY08247.1" /db_xref="TAIR:AT5G03900.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GW20" /translation="MASISTCLTLLPKSRLFTTKPSVSLKFFPGIQTLTSCPTSPRKT GNFFRPRVSFPVVKASLDVGSNSIRPGGAVETDKLPSDVRKRTMEAVDALGGRVTIGD VSSKAGLNLNQAQKALQALASDTNGFLEVSDEGDVLYVFPKDYRAKLAAKSLRIRFEP WVDKAKAALEYLVRVSFGTALIASIVLVYTTIIALITSRSDEDNRGRRGRSYDTGFTF YFSPTDLFWYWDPYYYRRRRLRTDDDEKMNFIESVFSFVFGDGDPNQGIEEERWKLIG QYIASNGGVVAAEELAPYLDLQTTNGAMSDESYVLPVLLRFDGQPEIDEEGNILYRFP SLQRTASSQRSGRKEYVGRRWSDWVGGIEKFFREKKWQFSKTSSSETAMVFGLGGINL FGVIILGAMLKDTAAVTPSGFIKFVTDIFPLLQIYAGSFFAIPLLRWFIIRQRNTDIE KRNQVREQFARALELPDLSLRRKLLSARDMAQKTVIGPDRIVYSTDRDLVEQDYEARE WDRRFREIEKSE" mRNA complement(join(5913778..5914087,5914393..5914536, 5915225..5915291,5915377..5915463,5915567..5915709, 5915944..5916009,5916666..5916755,5916893..5916958, 5917060..5917135,5917335..5917415,5917514..5917614, 5917713..5917820,5918579..5919098)) /locus_tag="TCM_022593" /product="Iron-sulfur cluster biosynthesis family protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:29625.m000714" /inference="similar to AA sequence:ricco:29625.m000714" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc557t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3091t2" CDS complement(join(5914049..5914087,5914393..5914536, 5915225..5915291,5915377..5915463,5915567..5915709, 5915944..5916009,5916666..5916755,5916893..5916958, 5917060..5917135,5917335..5917415,5917514..5917614, 5917713..5917820,5918579..5918968)) /locus_tag="TCM_022593" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29625.m000714" /codon_start=1 /product="Iron-sulfur cluster biosynthesis family protein isoform 3" /protein_id="EOY08248.1" /db_xref="TAIR:AT5G03900.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GW20" /translation="MASISTCLTLLPKSRLFTTKPSVSLKFFPGIQTLTSCPTSPRKT GNFFRPRVSFPVVKASLDVGSNSIRPGGAVETDKLPSDVRKRTMEAVDALGGRVTIGD VSSKAGLNLNQAQKALQALASDTNGFLEVSDEGDVLYVFPKDYRAKLAAKSLRIRFEP WVDKAKAALEYLVRVSFGTALIASIVLVYTTIIALITSRSDEDNRGRRGRSYDTGFTF YFSPTDLFWYWDPYYYRRRRLRTDDDEKMNFIESVFSFVFGDGDPNQGIEEERWKLIG QYIASNGGVVAAEELAPYLDLQTTNGAMSDESYVLPVLLRFDGQPEIDEEGNILYRFP SLQRTASSQRSGRKEYVGRRWSDWVGGIEKFFREKKWQFSKTSSSETAMVFGLGGINL FGVIILGAMLKDTAAVTPSGFIKFVTDIFPLLQIYAGSFFAIPLLRWFIIRQRNTDIE KRNQVREQFARALELPDLSLRRKFSVLLASSVMSK" mobile_element complement(5919212..5919296) /note="source:CACAO_Mutator_E592_scaffold_3 3630 3713" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(5920124..5923936) /note="source:INTACT566_F257_scaffold_7-int 2199 6010" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5923937..5924768 /note="source:CACAO_MITE135_scaffold_9 2 836" /mobile_element_type="transposon:TIR/MITE" mobile_element 5924588..5924801 /note="source:scaffold_4_CACTA_0482 5724 5940" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5924768..5926938 /note="source:CACAO_M_S_E66514_F257_scaffold_5 3753 6021" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5930973..5931030 /note="source:INTACT13_F5_scaffold_10-int 3616 3667" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(5931857..5934331) /locus_tag="TCM_022597" /note="dbxref CacaoGD:Thecc1EG022597" mRNA complement(5931857..5934331) /locus_tag="TCM_022597" /product="Pentatricopeptide (PPR) repeat-containing protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s06790.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s06790.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.95 coverage" CDS complement(5932724..5934202) /locus_tag="TCM_022597" /codon_start=1 /product="Pentatricopeptide (PPR) repeat-containing protein, putative" /protein_id="EOY08249.1" /db_xref="Phytozome:POPTR_0006s06790.1" /db_xref="TAIR:AT2G36240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SJN2" /translation="MKKNLLKPLQNPQSKSPQPLPPLSPLLDSPQTPTPSLSLFPTIP QPHHQNQLFSFLKTYLTHQPLTPKTLLHFLKIKLHHHPVFTHYDFQVFSWASTIDSFH HDHSTYLWMAHSLASSHRFSQLRSLLSFIAANPCPCSPGIFSCPQMEPLFRFVIDSFC RARKLNDAVFAFETMKKLIDGRPSVVIYNVLINGYLKNGDFDKALGFYERMERDRVKP DVYTFNTLINGYCRNGKFESGLELFREMKEKGCSPNVVTFNTLIRGFFRERKVDEAVK MAYEMIQLGCDFSSVTCEILVNGLCKEGRLLEACDLVIDFSRRMLLPKGFDYCDLMEE LCGKGNGRAFEVVNELWIKGNVPSLIACTTLIEGLRRLGRREDAFRLMDKMLKDGIVP DIMTFNCLMQDLCDLGRTMDANKFRLVASSKGLEPDEVTYNILIYGYTREGRRKEGEI LVDEMLDKGFIPDIARYNRLMDGLSNSKSLTLKKVSACRRSA" gene 5934463..5938794 /locus_tag="TCM_022598" /note="dbxref CacaoGD:Thecc1EG022598" mRNA join(5934463..5934695,5934784..5934845,5935662..5935869, 5936151..5936236,5936371..5936472,5936672..5936805, 5937879..5937927,5938096..5938794) /locus_tag="TCM_022598" /product="Aldolase-type TIM barrel family protein isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT2G36230.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033847001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3081t2; inference alignment:Newbler:10:TSA:cgbaB_g08663t00001" mRNA join(5934499..5934695,5934784..5934845,5935662..5935869, 5936151..5936236,5936371..5936472,5936672..5936805, 5937104..5937256,5937879..5937978,5938096..5938762) /locus_tag="TCM_022598" /product="Aldolase-type TIM barrel family protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT2G36230.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033847001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08663t00001" CDS join(5934572..5934695,5934784..5934845,5935662..5935869, 5936151..5936236,5936371..5936472,5936672..5936805, 5937104..5937256,5937879..5937978,5938096..5938281) /locus_tag="TCM_022598" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Aldolase-type TIM barrel family protein isoform 1" /protein_id="EOY08250.1" /db_xref="Phytozome:GSVIVT01033847001" /db_xref="TAIR:AT2G36230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O82782" /translation="MRTCSLRGTSILELSSTSPNFNSFYGSPKHPYARVTPSLSLKSC HFTVRCDVSFRPCIDIHKGKVKQIVGSTLTDSKEDGLILVTNFESDKSAAEFAKLYKN DGLKGGHVIMLGADPLSKAAAIEALHAYPGGLQVGGGINLDNCLSYIEEGASHVIVTS YVFNNGQMDLERLKGLVCVVGKQRLVLDLSCRKKEDKYAIVTDRWQKFSDVYLDEEVL HFLANYADEYLVHGVDVEGKNLPLSTSLLLASTKLLLITTLRSSMWIIPAEMNWCPTA MAILAQTCGAFILWLGIDKELVALLGEHSPVGSLYFCLLDGVLVPNLIPVTYAGGVTV MDDLETIKEAGKGRVDVTVGSALDIFGGNLSYSDVVAWHDSNRRGHKQDF" CDS join(5934572..5934695,5934784..5934845,5935662..5935869, 5936151..5936236,5936371..5936472,5936672..5936805, 5937879..5937927,5938096..5938281) /locus_tag="TCM_022598" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Aldolase-type TIM barrel family protein isoform 2" /protein_id="EOY08251.1" /db_xref="Phytozome:GSVIVT01033847001" /db_xref="TAIR:AT2G36230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O82782" /translation="MRTCSLRGTSILELSSTSPNFNSFYGSPKHPYARVTPSLSLKSC HFTVRCDVSFRPCIDIHKGKVKQIVGSTLTDSKEDGLILVTNFESDKSAAEFAKLYKN DGLKGGHVIMLGADPLSKAAAIEALHAYPGGLQVGGGINLDNCLSYIEEGASHVIVTS YVFNNGQMDLERLKGLVCVVGKQRLVLDLSCRKKEDKYAIVTDRWQKFSDVYLDEEVL HFLANYADEYLVHGVDVEGKKLGIDKELVALLGEHSPIPVTYAGGVTVMDDLETIKEA GKGRVDVTVGSALDIFGGNLSYSDVVAWHDSNRRGHKQDF" gene 5939206..5942174 /locus_tag="TCM_022599" /note="dbxref CacaoGD:Thecc1EG022599" mRNA join(5939206..5939754,5939858..5939944,5940197..5940267, 5940353..5940454,5940544..5940648,5941089..5941224, 5941634..5941743,5941840..5941943,5942027..5942174) /locus_tag="TCM_022599" /product="Soul heme-binding family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033848001" /inference="similar to AA sequence:Phytozome:Glyma19g38010.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc3194t7" mRNA join(5939352..5939754,5939858..5939944,5940197..5940267, 5940353..5940454,5940544..5940648,5941089..5941224, 5941634..5941738,5941836..5941943,5942027..5942050) /locus_tag="TCM_022599" /product="Soul heme-binding family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033848001" /inference="similar to AA sequence:Phytozome:Glyma19g38010.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc3194t8; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc3194t7" mRNA join(5939491..5939754,5939858..5939944,5940197..5940267, 5940353..5940453,5941632..5941738,5941836..5941941) /locus_tag="TCM_022599" /product="Soul heme-binding family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033848001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc2059t4_C1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc3194t7" CDS join(5939511..5939754,5939858..5939944,5940197..5940267, 5940353..5940454,5940544..5940648,5941089..5941224, 5941634..5941743,5941840..5941914) /locus_tag="TCM_022599" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Soul heme-binding family protein isoform 1" /protein_id="EOY08252.1" /db_xref="Phytozome:Glyma19g38010.1" /db_xref="TAIR:AT3G10130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7L8V8" /translation="MLLFKPSMAAQSLPKTLIFSSTQSPNAHRASLDIAKSMVMTERT ATTTTLAPPQRRTVSASEARISLVFALASQASSVSQRLLMDLASETAKYVFPKRFESR NLEEALMAVPDLETVRFKVLSRTDQYEIRVVEPYFIAETTMPGKTGFDFNGASQSFNV LAEYLFGKNTSKETMEMTTPVFTSRTQSDGERMEMTTPVITKKVEKQGKWQMSFVMPS KYGSNVPLPKDPSVRIKEVPRKVVAVVAFSGFVTDEEVKRRELKLRDALKNDRQFQVK EGASVEVAQYNPPFTLPFTRRNEIALEVEKKEG" CDS join(5939511..5939754,5939858..5939944,5940197..5940267, 5940353..5940454,5940544..5940648,5941089..5941224, 5941634..5941738,5941836..5941891) /locus_tag="TCM_022599" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Soul heme-binding family protein isoform 2" /protein_id="EOY08253.1" /db_xref="Phytozome:Glyma19g38010.1" /db_xref="TAIR:AT3G10130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7L8V8" /translation="MLLFKPSMAAQSLPKTLIFSSTQSPNAHRASLDIAKSMVMTERT ATTTTLAPPQRRTVSASEARISLVFALASQASSVSQRLLMDLASETAKYVFPKRFESR NLEEALMAVPDLETVRFKVLSRTDQYEIRVVEPYFIAETTMPGKTGFDFNGASQSFNV LAEYLFGKNTSKETMEMTTPVFTSRTQSDGERMEMTTPVITKKVEKQGKWQMSFVMPS KYGSNVPLPKDPSVRIKEVPRKVVAVVAFSGFVTDEEVKRRELKLRDALKNDRQFQVK EGASVEVGSTIHRLHFHSLAVMRLH" CDS join(5939511..5939754,5939858..5939944,5940197..5940267, 5940353..5940453,5941632..5941738,5941836..5941891) /locus_tag="TCM_022599" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Soul heme-binding family protein isoform 3" /protein_id="EOY08254.1" /db_xref="TAIR:AT3G10130.1" /translation="MLLFKPSMAAQSLPKTLIFSSTQSPNAHRASLDIAKSMVMTERT ATTTTLAPPQRRTVSASEARISLVFALASQASSVSQRLLMDLASETAKYVFPKRFESR NLEEALMAVPDLETVRFKVLSRTDQYEIRVVEPYFIAETTMPGKTGFDFNGASQSFNV LAEYLFGKGFVTDEEVKRRELKLRDALKNDRQFQVKEGASVEVGSTIHRLHFHSLAVM RLH" mobile_element complement(5942580..5942758) /note="source:scaffold_5_CACTA_0612 5156 5360" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5943681..5944502 /note="source:scaffold_8_CACTA_0867 422 1274" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5945509..5945921 /note="source:CACAO_Mutator_E592_scaffold_3 4740 5191" /mobile_element_type="transposon:TIR/Mutator" mobile_element 5945916..5947277 /note="source:scaffold_8_CACTA_0867 1836 3264" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5947894..5948750 /note="source:scaffold_8_CACTA_0867 4067 4935" /mobile_element_type="transposon:TIR/CACTA" mobile_element 5948719..5948806 /note="source:CACAO_PIF_E62_scaffold_2 11573 11657" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 5948746..5948840 /note="source:CACAO_Mutator_E592_scaffold_3 8613 8717" /mobile_element_type="transposon:TIR/Mutator" mobile_element 5950410..5951926 /note="source:CACAO_M_E34503_F17_scaffold_5 1 1517" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5952285..5952692 /note="source:CACAO_M_E34503_F17_scaffold_5 1109 1517" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5953053..5953460 /note="source:CACAO_M_E34503_F17_scaffold_5 1109 1517" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(5953364..5971101) /locus_tag="TCM_022601" /note="dbxref CacaoGD:Thecc1EG022601" mRNA complement(join(5953364..5953723,5966776..5967688, 5970553..5971101)) /locus_tag="TCM_022601" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29625.m000720" /inference="similar to AA sequence:frave:gene30307" /note="quality class is medium-utrpoor, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Newbler:10:TSA:cgbaL_g07959t00001" mobile_element 5954095..5955049 /note="source:CACAO_M_E49559_F88_scaffold_7 6479 7425" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5955441..5956211) /note="source:CACAO_M_E3248_F5_scaffold_1 2939 3716" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 5956347..5956569 /note="source:CACAO_M_E5899_F5_scaffold_2 21678 21908" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5956432..5957293) /note="source:CACAO_M_E65323_F12_scaffold_9 7737 8678" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(5958092..5958156) /note="source:CACAO_PIF_E119_scaffold_3 13661 13727" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 5960654..5960736 /note="source:CACAO_Mutator_E1320_scaffold_6 2150 2232" /mobile_element_type="transposon:TIR/Mutator" mobile_element 5960786..5964232 /note="source:CACAO_Mutator_E1018_scaffold_5 788 4285" /mobile_element_type="transposon:TIR/Mutator" CDS complement(5967085..5967564) /locus_tag="TCM_022601" /note="dbxref frave:gene30307" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08255.1" /db_xref="TAIR:AT3G10120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HC93" /translation="MGNCLVLDLKIIKVMKTDGKILEYQAPIKVQQVLSDFSGHALSD SFSGLQHLRPDAKLLRGQLYYLVPVPSPHQKGEKKKVRFSTPEVNDEQGSAGVVRIKL IISKQELQELLQKERVSVHDMISQIQSKESTKGVDKSDGGDNCKGWKPVLESIDEVN" gene 5975892..5980560 /locus_tag="TCM_022603" /note="dbxref CacaoGD:Thecc1EG022603" mRNA join(5975892..5976515,5977008..5977072,5977262..5977334, 5977433..5977552,5978060..5978174,5978357..5978426, 5978782..5978825,5978923..5978964,5979163..5979222, 5979423..5979490,5980033..5980090,5980190..5980542) /locus_tag="TCM_022603" /product="Thioredoxin family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033851001" /inference="similar to AA sequence:Phytozome:GSVIVT01033851001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08538t00001" mRNA join(5975925..5976515,5977008..5977072,5977262..5977334, 5977534..5977552,5978055..5978174,5978357..5978426, 5978782..5978825,5978923..5978964,5979163..5979222, 5979423..5979490,5980033..5980090,5980190..5980560) /locus_tag="TCM_022603" /product="Thioredoxin family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033851001" /inference="similar to AA sequence:Phytozome:GSVIVT01033851001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3110t6; inference alignment:Newbler:10:TSA:cgbaB_g08538t00001" mRNA join(5975925..5976515,5977008..5977072,5977262..5977334, 5977534..5977552,5978055..5978174,5978357..5978426, 5978782..5978825,5978923..5978964,5979163..5979222, 5979423..5979490,5979972..>5980055) /locus_tag="TCM_022603" /product="Thioredoxin family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033851001" /inference="similar to AA sequence:Phytozome:GSVIVT01033851001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc55t1; inference alignment:Newbler:10:TSA:cgbaB_g08538t00001" CDS join(5976199..5976515,5977008..5977072,5977262..5977334, 5977433..5977552,5978060..5978174,5978357..5978426, 5978782..5978825,5978923..5978964,5979163..5979222, 5979423..5979490,5980033..5980090,5980190..5980279) /locus_tag="TCM_022603" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Thioredoxin family protein isoform 1" /protein_id="EOY08256.1" /db_xref="Phytozome:GSVIVT01033851001" /db_xref="TAIR:AT5G03880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZC1" /translation="MVGVLNIPKLPLFSPLSLRKPSRPFISVKASSESSDSQASPAST STKEEQKPSFASSSTATTFAPPPNFKPPEPKRFTVRPDKTWDILGASLALFFRLGTGV FVSGYSASFVSENEIPPGQYCLEVGGSRVKETSKIGPRPEKPIEIYEFEGISCFISDE EKIDSVCFLFLPLEIMDNGGLHTTPVVHFVEREIVAVLDLDVLFYPCPKNGPNFRPKV TQMGGKQQFPYMVDPNTGVAMYESDEIIKYLVGKYGDGSVPFMLSLGLLTTLTAGFAM IGRMGKGSSYTPSKLPPKPLEIWSYEGSPFCKIVREVLVELELPHFQRSCARGSPKRQ ILYEKAGHFQVPYLEDPNTGVQMFESAEIAEYLRATYAQ" CDS join(5976199..5976515,5977008..5977072,5977262..5977334, 5977534..5977552,5978055..5978174,5978357..5978426, 5978782..5978825,5978923..5978964,5979163..5979222, 5979423..5979490,5980033..5980090,5980190..5980279) /locus_tag="TCM_022603" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Thioredoxin family protein isoform 2" /protein_id="EOY08257.1" /db_xref="Phytozome:GSVIVT01033851001" /db_xref="TAIR:AT5G03880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZC1" /translation="MVGVLNIPKLPLFSPLSLRKPSRPFISVKASSESSDSQASPAST STKEEQKPSFASSSTATTFAPPPNFKPPEPKRFTVRPDKTWDILGASLALFFRLGTGV FVSGYSASFVSENEIPPGQYCLEVGGSRVKETSKIGPRPEKPIEIYEFEGCPFCRKVR EIVAVLDLDVLFYPCPKNGPNFRPKVTQMGGKQQFPYMVDPNTGVAMYESDEIIKYLV GKYGDGSVPFMLSLGLLTTLTAGFAMIGRMGKGSSYTPSKLPPKPLEIWSYEGSPFCK IVREVLVELELPHFQRSCARGSPKRQILYEKAGHFQVPYLEDPNTGVQMFESAEIAEY LRATYAQ" CDS join(5976199..5976515,5977008..5977072,5977262..5977334, 5977534..5977552,5978055..5978174,5978357..5978426, 5978782..5978825,5978923..5978964,5979163..5979222, 5979423..5979490,5979972..>5980053) /locus_tag="TCM_022603" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Thioredoxin family protein isoform 3" /protein_id="EOY08258.1" /db_xref="Phytozome:GSVIVT01033851001" /db_xref="TAIR:AT5G03880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZC1" /translation="MVGVLNIPKLPLFSPLSLRKPSRPFISVKASSESSDSQASPAST STKEEQKPSFASSSTATTFAPPPNFKPPEPKRFTVRPDKTWDILGASLALFFRLGTGV FVSGYSASFVSENEIPPGQYCLEVGGSRVKETSKIGPRPEKPIEIYEFEGCPFCRKVR EIVAVLDLDVLFYPCPKNGPNFRPKVTQMGGKQQFPYMVDPNTGVAMYESDEIIKYLV GKYGDGSVPFMLSLGLLTTLTAGFAMIGRMGKGSSYTPSKLPPKPLEIWSYEGSPFCK IVREVLVELELPHFQRRGAPRHAIKTIFTDCSAVFHQLCSRQPK" gene 5980821..5999880 /locus_tag="TCM_022604" /note="dbxref CacaoGD:Thecc1EG022604" mRNA join(5980821..5980841,5997516..5997848,5997957..5998171, 5998337..5998443,5998934..5999036,5999260..5999442, 5999526..5999880) /locus_tag="TCM_022604" /product="Alpha carbonic anhydrase 1, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s22940.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042096t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s08050.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01688t00001" mobile_element complement(5984267..5984408) /note="source:CACAO_M_E14113_F106_scaffold_3 12426 12561" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5986210..5986284) /note="source:CACAO_on_S_E46_scaffold_2 17733 17807" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(5987049..5988541) /note="source:CACAO_M_E14113_F106_scaffold_3 17374 18901" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 5988536..5989076 /note="source:CACAO_M_E4900_F368_scaffold_2 4007 4548" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(5993283..5994397) /note="source:CACAO_on_E683_scaffold_9 1323 2305" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 5994239..5994605 /note="source:INTACT639F_F363_scaffold_5-int 8176 8548" /mobile_element_type="retrotransposon:LTR/Copia" CDS join(5997779..5997848,5997957..5998171,5998337..5998443, 5998934..5999036,5999260..5999442,5999526..5999657) /locus_tag="TCM_022604" /note="paralog of Thecc1EG042096t1" /codon_start=1 /product="Alpha carbonic anhydrase 1, putative" /protein_id="EOY08259.1" /db_xref="Phytozome:POPTR_0016s08050.1" /db_xref="TAIR:AT3G52720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TJ76" /translation="MALQISFSVLALTFLLGVASATDELSAIEFSYSGNNGPAKWGNL DPTFSACSSGKKQSPINIQKNQTVPNRSLKPLDRNYKPANATLVNNGFNVGLRFEEYA GELSIDGKNYLLKQMHWHLPSEHRIDGQQFAAELHLVHRAEDNSLAVVAILYLEDDAD PFISKLKDGLDKLAKEHCKADEIAEIPIGTMDPKQLKRSSRKYYRYVGSLTTPPCSES VTWSILGKVRSISKEQIAALQTPVKSDCKKNARPCQAMNGRKVELYNELFE" gene complement(6000743..6006451) /locus_tag="TCM_022606" /note="dbxref CacaoGD:Thecc1EG022606" mRNA complement(join(6000743..6002284,6004359..6004484, 6005888..6006451)) /locus_tag="TCM_022606" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29625.m000723" /inference="similar to AA sequence:Phytozome:POPTR_0006s22930.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g06381t00001" CDS complement(6001207..6002055) /locus_tag="TCM_022606" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08260.1" /db_xref="Phytozome:POPTR_0006s22930.1" /db_xref="TAIR:AT3G52710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIU8" /translation="MPQGNLETLVSACAGGSCDNKIVCETLATTDGDPDDHQLHTADK PGEEEIPSDFPPESFWLSKDAELDWFDRNAFYERKESQKGNSVSNSTNLNPNINSNSN SQRFSLRKSKASIIGLPKPQKSCFVETKNRKNSKPGNTRLFPKRSGSVKSDPPVIEPS SPKVSCMGRVRSKRDRNRRLKKNLQKSAEVETIQEKTTRKKGGFFSSFRAIFRSNRKE RELHALPVAPSPPRNSDIRTRLPPDDRDAISIAPEIAESEPVLEPVSIGGMKRFVSGR RSEPLI" mobile_element 6003931..6005015 /note="source:CACAO_on_S_E46_scaffold_2 380 1432" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(6009896..6011693) /note="source:scaffold_2_CACTA_0239 6049 7857" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6011693..6014649 /note="source:INTACT118_F5_scaffold_9-int 9414 12393" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6014645..6014721) /note="source:scaffold_2_CACTA_0239 5982 6058" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6014733..6015672) /note="source:scaffold_2_CACTA_0239 5080 5922" /mobile_element_type="transposon:TIR/CACTA" gene 6017023..6018474 /locus_tag="TCM_047049" /note="dbxref CacaoGD:Thecc1EG047049" mRNA 6017023..6018474 /locus_tag="TCM_047049" /product="Glutaredoxin family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s22920.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s22920.1" /note="quality class is strong-expertchoice, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3101t1" CDS 6017062..6018231 /locus_tag="TCM_047049" /codon_start=1 /product="Glutaredoxin family protein, putative" /protein_id="EOY08261.1" /db_xref="Phytozome:POPTR_0006s22920.1" /db_xref="TAIR:AT5G03870.1" /translation="MGCVSSKLVKKEIKREILLNNGGDYVNHVVSLKSSTYGVLKLDN EIEQQEEVGISETKRVQRSPPREEPEVINAWELMEDLEEDGTIKRSPKSRVFARGVGQ KDVRSPLKFLNQIGSPLKMRRFGGKENKGRVDGKSDFSPKSILRVNNSLDGSCKAVLK LSYPVKRTRSEGFEGGDSGFSARRRSFSPLFDPELVALYEKELSEEEEQIKRIISPEP EIRKWKKSQDSKAILQVFEEKCPAAGENAVVIYTTTLRGIRKTFEECNTVRSIIESYD IQMFERDISMDSGFKEELRKLTGTKEVKVPLVFVKGRLIGGVEEIVKLEEEGKLEILF NGIPRAIPGCEGCAGVRFVMCTECNGSCKVLDGDQKKIRCGECNENGLVQCPICC" gene 6020271..6024120 /locus_tag="TCM_022608" /note="dbxref CacaoGD:Thecc1EG022608" mRNA join(6020271..6020435,6022201..6023531,6023737..6023993) /locus_tag="TCM_022608" /product="F-box/kelch-repeat protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:28629.m000548" /inference="similar to AA sequence:ricco:28629.m000548" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc783t1; alternateUTRof:Thecc1EG022608t1; inference alignment:Newbler:10:TSA:cgbaB_g02041t00002" mRNA join(6020306..6020435,6022201..6023317,6023737..6024120) /locus_tag="TCM_022608" /product="F-box/kelch-repeat protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:28629.m000548" /inference="similar to AA sequence:ricco:28629.m000548" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02041t00002" CDS join(6020404..6020435,6022201..6023299) /locus_tag="TCM_022608" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28629.m000548" /codon_start=1 /product="F-box/kelch-repeat protein isoform 1" /protein_id="EOY08262.1" /db_xref="TAIR:AT1G57790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HC88" /translation="MAGRKKRKLKLLAETANGDERTATEDGKERLELQTWSDLPVELL ELIMSHLTLEDNVRASAVCKRWHKVAISVRVVNQSPWLMYFPKYGNLYEFYDPSERKT YSLELPELLGSRVCYTKDGWLLLYRPRNHRVFFFNPFTREMIKLPRFELTYQIVAFSC APTSTSCVVFTIKHISPTIVAISTCHPGASEWATVNHQNRLPFVSSIWNKLVFCSGIF YCLSLTGWLGVYDPLERTWNVLAVPPPRCPENFFAKNWWKGKFMAEHNGDILVIYTCC TENPIIFKLDQSEMVWEEMKTLDGVTLFASFLSSHSRIDLPGIMRNSVYFSKVRFFGK RCISYSLDDCRYYPRKQCYDWGEQDPFENIWIEPPEDASSFF" CDS join(6020404..6020435,6022201..6023299) /locus_tag="TCM_022608" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28629.m000548" /codon_start=1 /product="F-box/kelch-repeat protein isoform 1" /protein_id="EOY08263.1" /db_xref="TAIR:AT1G57790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HC88" /translation="MAGRKKRKLKLLAETANGDERTATEDGKERLELQTWSDLPVELL ELIMSHLTLEDNVRASAVCKRWHKVAISVRVVNQSPWLMYFPKYGNLYEFYDPSERKT YSLELPELLGSRVCYTKDGWLLLYRPRNHRVFFFNPFTREMIKLPRFELTYQIVAFSC APTSTSCVVFTIKHISPTIVAISTCHPGASEWATVNHQNRLPFVSSIWNKLVFCSGIF YCLSLTGWLGVYDPLERTWNVLAVPPPRCPENFFAKNWWKGKFMAEHNGDILVIYTCC TENPIIFKLDQSEMVWEEMKTLDGVTLFASFLSSHSRIDLPGIMRNSVYFSKVRFFGK RCISYSLDDCRYYPRKQCYDWGEQDPFENIWIEPPEDASSFF" gene 6024344..6038744 /locus_tag="TCM_022609" /note="dbxref CacaoGD:Thecc1EG022609" mRNA join(6024344..6024549,6036232..6036263,6036652..6037238, 6038684..6038744) /locus_tag="TCM_022609" /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025529t1" /inference="similar to AA sequence:frave:gene20290" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.41 coverage" mobile_element 6024475..6025578 /note="source:CACAO_Again_on_E122_scaffold_5 1 1104" /mobile_element_type="transposon:TIR/hAT" mobile_element 6025779..6025917 /note="source:CACAO_M_E11925_F316_scaffold_2 7681 7831" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6025824..6027340) /note="source:CACAO_M_S_E119872_F88_scaffold_10 3801 5295" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6027353..6028191 /note="source:CACAO_M_E44088_F76_scaffold_5 1623 2466" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6028811..6028844 /note="source:scaffold_5_CACTA_0596 16857 16890" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6029253..6029281 /note="source:scaffold_5_CACTA_0596 17323 17390" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6029282..6029345) /note="source:CACAO_M_E3248_F5_scaffold_1 7088 7155" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6029346..6029364 /note="source:scaffold_5_CACTA_0596 17391 17440" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6029685..6029778) /note="source:INTACT502_F76_scaffold_5-int 2824 2912" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6029702..6031460 /note="source:CACAO_M_E69808_F76_scaffold_9 2461 4242" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6031462..6033664 /note="source:INTACT554_F250_scaffold_7-int 1 1849" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6034521..6034947) /note="source:CACAO_M_S_E51603_F76_scaffold_4 862 1466" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6034730..6035912 /note="source:INTACT459_F220_scaffold_4-int 7485 8596" /mobile_element_type="retrotransposon:LTR/Copia" CDS join(6036235..6036263,6036652..6037174) /locus_tag="TCM_022609" /note="dbxref frave:gene20290; paralog of Thecc1EG025529t1" /codon_start=1 /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /protein_id="EOY08264.1" /db_xref="TAIR:AT4G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5ALL8" /translation="MAADLFRKDLFKTNDNSNRLRKKTDANIEVDSTGYRQLIGKLLY LTFTKPNITYFVQVLSQFMDQPTEEHLLTAHGALKHLKSAPGQGILMDAYSDLKITAY CDNDWAGCPDSRKSVTGYSIFFFGNFLVNWKSKKQSVVARSFTEAEYRSMESACCEVI GLKNLLADFGLNQGITVRLYFDN" gene complement(6037262..6043746) /locus_tag="TCM_022611" /note="dbxref CacaoGD:Thecc1EG022611" mRNA complement(join(6037262..6037319,6038705..6039151, 6039548..6039633,6040679..6040854,6040944..6041151, 6041242..6041415,6041497..6041637,6041851..6041967, 6042047..6042464,6043475..6043746)) /locus_tag="TCM_022611" /product="RNA-binding family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:28629.m000549" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041396t1" /inference="similar to AA sequence:ricco:28629.m000549" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02193t00002" mobile_element complement(6038226..6038337) /note="source:CACAO_M_S_E18487_F233_scaffold_3 1191 1302" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6038262..6038336 /note="source:CACAO_M_E3248_F5_scaffold_1 3655 3732" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA complement(join(6038669..6039103,6039548..6039633, 6040679..6040854,6040944..6041151,6041242..6041415, 6041497..6041637,6041851..6041967,6042047..6042464, 6043479..6043592)) /locus_tag="TCM_022611" /product="RNA-binding family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:28629.m000549" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041396t1" /inference="similar to AA sequence:ricco:28629.m000549" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3128t3; inference alignment:Newbler:10:TSA:cgbaL_g02193t00002; inference alignment:Newbler:10:TSA:cgbaB_g01667t00002" mRNA complement(join(6038669..6039103,6039548..6039636, 6040679..6040854,6040944..6041151,6041242..6041415, 6041497..6041637,6041851..6041967,6042047..6042464, 6043479..6043592)) /locus_tag="TCM_022611" /product="RNA-binding family protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:28629.m000549" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041396t1" /inference="similar to AA sequence:ricco:28629.m000549" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3128t2; inference alignment:Newbler:10:TSA:cgbaL_g02193t00002; inference alignment:Newbler:10:TSA:cgbaB_g01667t00002" mRNA complement(join(6038764..6039103,6039548..6039633, 6040679..6040854,6040944..6041151,6041242..6041415, 6041497..6041637,6041851..6041967,6042047..6042924)) /locus_tag="TCM_022611" /product="RNA-binding family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:28629.m000549" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041396t1" /inference="similar to AA sequence:ricco:28629.m000549" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02193t00001; alternateUTRof:Thecc1EG022611t2; inference alignment:Newbler:10:TSA:cgbaL_g02193t00002; inference alignment:Newbler:10:TSA:cgbaB_g01667t00002" mRNA complement(join(6038807..6038952,6039603..6039633, 6040679..6040697,6040754..6040854,6040944..6041151, 6041242..6041415,6041497..6041637,6041851..6041967, 6042047..6042464,6043479..6043617)) /locus_tag="TCM_022611" /product="RNA-binding family protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:28629.m000549" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041396t1" /inference="similar to AA sequence:frave:gene30320" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01667t00002; inference alignment:Newbler:10:TSA:cgbaB_g01667t00002; inference alignment:Newbler:10:TSA:cgbaL_g02193t00002" mRNA complement(join(6038807..6038952,6039603..6039633, 6040679..6040697,6040754..6040854,6040944..6041151, 6041242..6041415,6041497..6041637,6041851..6041967, 6042047..6042813,6043475..6043524)) /locus_tag="TCM_022611" /product="RNA-binding family protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:28629.m000549" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041396t1" /inference="similar to AA sequence:frave:gene30320" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01667t00001; alternateUTRof:Thecc1EG022611t4; inference alignment:Newbler:10:TSA:cgbaB_g01667t00002; inference alignment:Newbler:10:TSA:cgbaL_g02193t00002" CDS complement(join(6038856..6038952,6039603..6039633, 6040679..6040697,6040754..6040854,6040944..6041151, 6041242..6041415,6041497..6041637,6041851..6041967, 6042047..6042430)) /locus_tag="TCM_022611" /note="encoded by transcript variant 4; alternatively spliced; dbxref frave:gene30320; paralog of Thecc1EG041396t1" /codon_start=1 /product="RNA-binding family protein isoform 4" /protein_id="EOY08268.1" /db_xref="TAIR:AT3G52660.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LXJ8" /translation="MPRTREETEEQVDLDGDNEPEETIEEEVEYEEVEEEEEVEVEEE VEEEVEEEEVEEEEENVELADVHKGSDADEVMNDPETEEEKKKKHAELLALPPHGSEV YLGGIPHDASEEDLRRFCESIGEVTEVRIMKGKDSGEAKGYAFVTFRSKELASKAIEK LNNYELKGKKIKCSTSQAKNKLFIGNVPRHWGEEDMKKVVTEIGPGVNCIELLKDPMN PSRNRGFVFIEYYNHACAEYSRQKMLKPTFTLDNNAPTVSWADPRNAESSAATQVKAL YVKNLPKDITQDRLKKLFEHHGKITKVVVPPAKAGKEDSRYGFVHFAERSSAMKALKN TEKYEIDGQLLECSLAKPQADQKSSGGSGPQNSTLNSSFLPSCRLWTADDLRSRSNSW SSSVTLCEKRKEMYLLELVLFFVNTMNGKCW" CDS complement(join(6038856..6038952,6039603..6039633, 6040679..6040697,6040754..6040854,6040944..6041151, 6041242..6041415,6041497..6041637,6041851..6041967, 6042047..6042430)) /locus_tag="TCM_022611" /note="encoded by transcript variant 6; alternatively spliced; dbxref frave:gene30320; paralog of Thecc1EG041396t1" /codon_start=1 /product="RNA-binding family protein isoform 4" /protein_id="EOY08270.1" /db_xref="TAIR:AT3G52660.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LXJ8" /translation="MPRTREETEEQVDLDGDNEPEETIEEEVEYEEVEEEEEVEVEEE VEEEVEEEEVEEEEENVELADVHKGSDADEVMNDPETEEEKKKKHAELLALPPHGSEV YLGGIPHDASEEDLRRFCESIGEVTEVRIMKGKDSGEAKGYAFVTFRSKELASKAIEK LNNYELKGKKIKCSTSQAKNKLFIGNVPRHWGEEDMKKVVTEIGPGVNCIELLKDPMN PSRNRGFVFIEYYNHACAEYSRQKMLKPTFTLDNNAPTVSWADPRNAESSAATQVKAL YVKNLPKDITQDRLKKLFEHHGKITKVVVPPAKAGKEDSRYGFVHFAERSSAMKALKN TEKYEIDGQLLECSLAKPQADQKSSGGSGPQNSTLNSSFLPSCRLWTADDLRSRSNSW SSSVTLCEKRKEMYLLELVLFFVNTMNGKCW" CDS complement(join(6038965..6039103,6039548..6039633, 6040679..6040854,6040944..6041151,6041242..6041415, 6041497..6041637,6041851..6041967,6042047..6042430)) /locus_tag="TCM_022611" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28629.m000549; paralog of Thecc1EG041396t1" /codon_start=1 /product="RNA-binding family protein isoform 2" /protein_id="EOY08266.1" /db_xref="TAIR:AT3G52660.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LXJ8" /translation="MPRTREETEEQVDLDGDNEPEETIEEEVEYEEVEEEEEVEVEEE VEEEVEEEEVEEEEENVELADVHKGSDADEVMNDPETEEEKKKKHAELLALPPHGSEV YLGGIPHDASEEDLRRFCESIGEVTEVRIMKGKDSGEAKGYAFVTFRSKELASKAIEK LNNYELKGKKIKCSTSQAKNKLFIGNVPRHWGEEDMKKVVTEIGPGVNCIELLKDPMN PSRNRGFVFIEYYNHACAEYSRQKMLKPTFTLDNNAPTVSWADPRNAESSAATQVKAL YVKNLPKDITQDRLKKLFEHHGKITKVVVPPAKAGKEDSRYGFVHFAERSSAMKALKN TEKYEIDGQLLECSLAKPQADQKSSGGSGPQNSTLNSSFLPPLGYGLFGGAYGGLGTG FGPAGFGQPMIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGMQPHSPPVQPRSSRGGA SGSASGGRRGSSDSSRGRSRYNPY" CDS complement(join(6038965..6039103,6039548..6039633, 6040679..6040854,6040944..6041151,6041242..6041415, 6041497..6041637,6041851..6041967,6042047..6042430)) /locus_tag="TCM_022611" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:28629.m000549; paralog of Thecc1EG041396t1" /codon_start=1 /product="RNA-binding family protein isoform 2" /protein_id="EOY08269.1" /db_xref="TAIR:AT3G52660.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LXJ8" /translation="MPRTREETEEQVDLDGDNEPEETIEEEVEYEEVEEEEEVEVEEE VEEEVEEEEVEEEEENVELADVHKGSDADEVMNDPETEEEKKKKHAELLALPPHGSEV YLGGIPHDASEEDLRRFCESIGEVTEVRIMKGKDSGEAKGYAFVTFRSKELASKAIEK LNNYELKGKKIKCSTSQAKNKLFIGNVPRHWGEEDMKKVVTEIGPGVNCIELLKDPMN PSRNRGFVFIEYYNHACAEYSRQKMLKPTFTLDNNAPTVSWADPRNAESSAATQVKAL YVKNLPKDITQDRLKKLFEHHGKITKVVVPPAKAGKEDSRYGFVHFAERSSAMKALKN TEKYEIDGQLLECSLAKPQADQKSSGGSGPQNSTLNSSFLPPLGYGLFGGAYGGLGTG FGPAGFGQPMIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGMQPHSPPVQPRSSRGGA SGSASGGRRGSSDSSRGRSRYNPY" CDS complement(join(6038965..6039151,6039548..6039633, 6040679..6040854,6040944..6041151,6041242..6041415, 6041497..6041637,6041851..6041967,6042047..6042430)) /locus_tag="TCM_022611" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28629.m000549; paralog of Thecc1EG041396t1" /codon_start=1 /product="RNA-binding family protein isoform 1" /protein_id="EOY08265.1" /db_xref="TAIR:AT3G52660.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LXJ8" /translation="MPRTREETEEQVDLDGDNEPEETIEEEVEYEEVEEEEEVEVEEE VEEEVEEEEVEEEEENVELADVHKGSDADEVMNDPETEEEKKKKHAELLALPPHGSEV YLGGIPHDASEEDLRRFCESIGEVTEVRIMKGKDSGEAKGYAFVTFRSKELASKAIEK LNNYELKGKKIKCSTSQAKNKLFIGNVPRHWGEEDMKKVVTEIGPGVNCIELLKDPMN PSRNRGFVFIEYYNHACAEYSRQKMLKPTFTLDNNAPTVSWADPRNAESSAATQVKAL YVKNLPKDITQDRLKKLFEHHGKITKVVVPPAKAGKEDSRYGFVHFAERSSAMKALKN TEKYEIDGQLLECSLAKPQADQKSSGGSGPQNSTLNSSFLPPLGYGLFGGAYGGLGTG FGPAGFGQPMIYGRGPTPAGMAMMPMLLPDGRIGYVLSGSWYSLEEIVFVFRRQQPGM QPHSPPVQPRSSRGGASGSASGGRRGSSDSSRGRSRYNPY" CDS complement(join(6038965..6039103,6039548..6039636, 6040679..6040854,6040944..6041151,6041242..6041415, 6041497..6041637,6041851..6041967,6042047..6042430)) /locus_tag="TCM_022611" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:28629.m000549; paralog of Thecc1EG041396t1" /codon_start=1 /product="RNA-binding family protein isoform 3" /protein_id="EOY08267.1" /db_xref="TAIR:AT3G52660.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LXJ8" /translation="MPRTREETEEQVDLDGDNEPEETIEEEVEYEEVEEEEEVEVEEE VEEEVEEEEVEEEEENVELADVHKGSDADEVMNDPETEEEKKKKHAELLALPPHGSEV YLGGIPHDASEEDLRRFCESIGEVTEVRIMKGKDSGEAKGYAFVTFRSKELASKAIEK LNNYELKGKKIKCSTSQAKNKLFIGNVPRHWGEEDMKKVVTEIGPGVNCIELLKDPMN PSRNRGFVFIEYYNHACAEYSRQKMLKPTFTLDNNAPTVSWADPRNAESSAATQVKAL YVKNLPKDITQDRLKKLFEHHGKITKVVVPPAKAGKEDSRYGFVHFAERSSAMKALKN TEKYEIDGQLLECSLAKPQADQKSSGGSGPQNSTLNSSFLPPLGYGLFGGAYGGLGTG FGPAGFGQQPMIYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGMQPHSPPVQPRSSRGG ASGSASGGRRGSSDSSRGRSRYNPY" mRNA complement(join(6039079..6039103,6039548..6039633, 6040679..6041151,6041242..6041415,6041497..6041637, 6041851..6041967,6042047..6042464,6043475..6043612)) /locus_tag="TCM_022611" /product="RNA-binding family protein isoform 7" /inference="alignment:exonerate- protein:2:ricco:28629.m000549" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041396t1" /inference="similar to AA sequence:frave:gene30320" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc232t6; inference alignment:Newbler:10:TSA:cgbaB_g01667t00002; inference alignment:Newbler:10:TSA:cgbaL_g02193t00002" CDS complement(join(6040858..6041151,6041242..6041415, 6041497..6041637,6041851..6041967,6042047..6042430)) /locus_tag="TCM_022611" /note="encoded by transcript variant 7; alternatively spliced; dbxref frave:gene30320; paralog of Thecc1EG041396t1" /codon_start=1 /product="RNA-binding family protein isoform 7" /protein_id="EOY08271.1" /db_xref="TAIR:AT3G52660.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LXJ8" /translation="MPRTREETEEQVDLDGDNEPEETIEEEVEYEEVEEEEEVEVEEE VEEEVEEEEVEEEEENVELADVHKGSDADEVMNDPETEEEKKKKHAELLALPPHGSEV YLGGIPHDASEEDLRRFCESIGEVTEVRIMKGKDSGEAKGYAFVTFRSKELASKAIEK LNNYELKGKKIKCSTSQAKNKLFIGNVPRHWGEEDMKKVVTEIGPGVNCIELLKDPMN PSRNRGFVFIEYYNHACAEYSRQKMLKPTFTLDNNAPTVSWADPRNAESSAATQVKAL YVKNLPKDITQDRLKKLFEHHGKITKVVVPPAKAGKEDSRYGFVHFAERSSAMKALKN TEKYEIDGWICSLYLPVFLMEINGIFMMFCWIFSC" mobile_element 6043725..6044122 /note="source:CACAO_Again_on_E123_scaffold_5 1 398" /mobile_element_type="transposon:TIR/hAT" mobile_element 6044223..6044910 /note="source:CACAO_Again_on_E123_scaffold_5 399 1086" /mobile_element_type="transposon:TIR/hAT" gene 6045756..6046736 /locus_tag="TCM_022613" /note="dbxref CacaoGD:Thecc1EG022613" mRNA join(6045756..6045962,6046192..6046350,6046443..6046736) /locus_tag="TCM_022613" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3112t1" CDS join(6045798..6045962,6046192..6046350,6046443..6046490) /locus_tag="TCM_022613" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08272.1" /translation="MGKKKRLQQVKKKQQQQHAASSSSSGPRATPSSSHPTVPRLCYA ATLYLSNRIKQRNERIRVLNQIRARWIRRRVMKILVQHCCILMGKLLKSFFKCKRVFF IRKVVKWRPLLLLWRRGNQIV" gene complement(6048608..6050692) /locus_tag="TCM_022614" /note="dbxref CacaoGD:Thecc1EG022614" mRNA complement(join(6048608..6048889,6049623..6049880, 6050491..6050556,6050640..6050692)) /locus_tag="TCM_022614" /product="Nucleic acid-binding, OB-fold-like protein" /inference="alignment:exonerate- protein:2:TAIR:AT4G18590.1" /inference="similar to AA sequence:TAIR:AT4G18590.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g09488t00001" CDS complement(join(6048825..6048889,6049623..6049878)) /locus_tag="TCM_022614" /codon_start=1 /product="Nucleic acid-binding, OB-fold-like protein" /protein_id="EOY08273.1" /db_xref="TAIR:AT4G18590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A2Q2E2" /translation="MDTSSPAALVNGGLLRMHVGRKVRAVIQVVRSDVGSVVGKSTDD CQLVVKGSPPVSLTSYVEVIGVAENDNSIQAEIWTNFGDSFDTSNYDQLCQLANGEFK HLFL" mobile_element complement(6051433..6053962) /note="source:CACAO_M_E11656_F17_scaffold_2 1536 4130" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6054052..6054776 /note="source:CACAO_M_E23001_F244_scaffold_4 1 725" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6055197..6056987) /note="source:scaffold_4_CACTA_0503 3237 5028" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6056672..6057032) /note="source:INTACT651_F88_scaffold_2-int 3169 3522" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(6057014..6063032) /locus_tag="TCM_022616" /note="dbxref CacaoGD:Thecc1EG022616" mRNA complement(join(6057014..6057572,6058535..6058722, 6058844..6058929,6059030..6059246,6059772..6059855, 6060610..6060717,6060993..6061079,6061484..6062332, 6063011..6063032)) /locus_tag="TCM_022616" /product="ABC transporter B family member 29 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s22830.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033860001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:PASA:2:TSA:puevd3b021891t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3138t6" mRNA complement(join(6057014..6057572,6058134..6058263, 6058535..6058722,6058844..6058929,6059030..6059246, 6059772..6059855,6059999..6060139,6060610..6060717, 6060993..6061079,6061484..6062332,6063011..6063032)) /locus_tag="TCM_022616" /product="ABC transporter B family member 29 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s22830.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033860001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3138t6" mRNA complement(join(6057090..6057572,6058134..6058263, 6058535..6058722,6058844..6058929,6059030..6059246, 6059772..6059855,6060610..6060717,6060993..6061079, 6061484..6062119)) /locus_tag="TCM_022616" /product="ABC transporter B family member 29 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s22830.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033860001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3138t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3138t6; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc633t4" mRNA complement(join(6057090..6057572,6058535..6058722, 6058814..6058929,6059030..6059246,6059772..6059855, 6060610..6060717,6060993..6061079,6061484..6062119)) /locus_tag="TCM_022616" /product="ABC transporter B family member 29 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s22830.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033860001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3138t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3138t6; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc633t4" CDS complement(join(6057426..6057572,6058134..6058263, 6058535..6058722,6058844..6058929,6059030..6059246, 6059772..6059855,6060610..6060717,6060993..6061079, 6061484..6062116)) /locus_tag="TCM_022616" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="ABC transporter B family member 29 isoform 2" /protein_id="EOY08275.1" /db_xref="Phytozome:GSVIVT01033860001" /db_xref="TAIR:AT5G03910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZB8" /translation="MPLHSLILLSPPSQPPLPPPSLHLHLRPTSKPETKFLRFNSPSR LPFIPPLKLINSTKLPLNPQTQQNPLSKTLETLTKLKPFLQTNHQPILLGWLCSSISV FSLLKVIPRIGSFFSNLTNNISISKLGDQGLVLGVLLLAKLVICYWKQVFLWEAALRV VYQMRVFVFEKVLERELGFFEGGNAVSPGDIAYRITAEASDVADTVFALLNTTVPNIL QLFAMATQMLVISPSLSLISEMVIPCMAFVIAYLGERLLKISTRAYLSIATLAAYLNE GIGKAYNELKQGEPAVERLFFLTKLESKVIEKPDAIYLSHVNGEVKFCDVSFKYADNM PHVLDGLNLHIKARETTALVRPSGGGKTTLVKLLLRLYKPSSGSILVDNRNIQNIRLE SLRRHVGLVSQDIMLFFGTVAENIGYRDLMTNIDMERVELAARIANADEFVRTLPEGY RSHIGPRGSLLSAGQKQRLAIARAVYQNSSILVLDEATSVLDSRSELLVRQAVERLME NHTVLVIAHRLETVLMADRAFLLQDGKLEELTESPLLAGHCDSLMSTSVVI" CDS complement(join(6057426..6057572,6058134..6058263, 6058535..6058722,6058844..6058929,6059030..6059246, 6059772..6059855,6059999..6060139,6060610..6060717, 6060993..6061079,6061484..6062116)) /locus_tag="TCM_022616" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="ABC transporter B family member 29 isoform 1" /protein_id="EOY08274.1" /db_xref="Phytozome:GSVIVT01033860001" /db_xref="TAIR:AT5G03910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZB8" /translation="MPLHSLILLSPPSQPPLPPPSLHLHLRPTSKPETKFLRFNSPSR LPFIPPLKLINSTKLPLNPQTQQNPLSKTLETLTKLKPFLQTNHQPILLGWLCSSISV FSLLKVIPRIGSFFSNLTNNISISKLGDQGLVLGVLLLAKLVICYWKQVFLWEAALRV VYQMRVFVFEKVLERELGFFEGGNAVSPGDIAYRITAEASDVADTVFALLNTTVPNIL QLFAMATQMLVISPSLSLISEMVIPCMAFVIAYLGERLLKISTRAYLSIATLAAYLNE VAHYQYSGNFSFSFSSVCTKKSFLNSLDLLITTIKFCVVVFLGLKTEGIGKAYNELKQ GEPAVERLFFLTKLESKVIEKPDAIYLSHVNGEVKFCDVSFKYADNMPHVLDGLNLHI KARETTALVRPSGGGKTTLVKLLLRLYKPSSGSILVDNRNIQNIRLESLRRHVGLVSQ DIMLFFGTVAENIGYRDLMTNIDMERVELAARIANADEFVRTLPEGYRSHIGPRGSLL SAGQKQRLAIARAVYQNSSILVLDEATSVLDSRSELLVRQAVERLMENHTVLVIAHRL ETVLMADRAFLLQDGKLEELTESPLLAGHCDSLMSTSVVI" CDS complement(join(6057560..6057572,6058535..6058722, 6058844..6058929,6059030..6059246,6059772..6059855, 6060610..6060717,6060993..6061079,6061484..6062116)) /locus_tag="TCM_022616" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="ABC transporter B family member 29 isoform 4" /protein_id="EOY08277.1" /db_xref="Phytozome:GSVIVT01033860001" /db_xref="TAIR:AT5G03910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZB8" /translation="MPLHSLILLSPPSQPPLPPPSLHLHLRPTSKPETKFLRFNSPSR LPFIPPLKLINSTKLPLNPQTQQNPLSKTLETLTKLKPFLQTNHQPILLGWLCSSISV FSLLKVIPRIGSFFSNLTNNISISKLGDQGLVLGVLLLAKLVICYWKQVFLWEAALRV VYQMRVFVFEKVLERELGFFEGGNAVSPGDIAYRITAEASDVADTVFALLNTTVPNIL QLFAMATQMLVISPSLSLISEMVIPCMAFVIAYLGERLLKISTRAYLSIATLAAYLNE GIGKAYNELKQGEPAVERLFFLTKLESKVIEKPDAIYLSHVNGEVKFCDVSFKYADNM PHVLDGLNLHIKARETTALVRPSGGGKTTLVKLLLRLYKPSSGSILVDNRNIQNIRLE SLRRHVGLVSQDIMLFFGTVAENIGYRDLMTNIDMERVELAARIANADEFVRTLPEGY RSHIGPRGSLLSAGQKQRCWS" mRNA complement(join(<6058548..6058722,6058844..6058929, 6059030..6059246,6059772..6059855,6060610..6060717, 6060993..6061079,6061484..>6062181)) /locus_tag="TCM_022616" /product="ABC transporter B family member 29 isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s22830.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033860001" /note="transcript variant 6; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc640t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3138t6; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc633t4" mRNA complement(join(6058548..6058722,6058814..6058929, 6059030..6059246,6059772..6059855,6060610..6060717, 6060993..6061079,6061484..6062181)) /locus_tag="TCM_022616" /product="ABC transporter B family member 29 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s22830.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033860001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc640t4; alternateUTRof:Thecc1EG022616t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3138t6; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc633t4" CDS complement(join(<6058549..6058722,6058844..6058929, 6059030..6059246,6059772..6059855,6060610..6060717, 6060993..6061079,6061484..>6062179)) /locus_tag="TCM_022616" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="ABC transporter B family member 29 isoform 6" /protein_id="EOY08279.1" /db_xref="Phytozome:GSVIVT01033860001" /db_xref="TAIR:AT5G03910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZB8" /translation="FCSFTSKNAINTLHFFFSPCNMPLHSLILLSPPSQPPLPPPSLH LHLRPTSKPETKFLRFNSPSRLPFIPPLKLINSTKLPLNPQTQQNPLSKTLETLTKLK PFLQTNHQPILLGWLCSSISVFSLLKVIPRIGSFFSNLTNNISISKLGDQGLVLGVLL LAKLVICYWKQVFLWEAALRVVYQMRVFVFEKVLERELGFFEGGNAVSPGDIAYRITA EASDVADTVFALLNTTVPNILQLFAMATQMLVISPSLSLISEMVIPCMAFVIAYLGER LLKISTRAYLSIATLAAYLNEGIGKAYNELKQGEPAVERLFFLTKLESKVIEKPDAIY LSHVNGEVKFCDVSFKYADNMPHVLDGLNLHIKARETTALVRPSGGGKTTLVKLLLRL YKPSSGSILVDNRNIQNIRLESLRRHVGLVSQDIMLFFGTVAENIGYRDLMTNIDMER VELAARIANADEFVRTLPEGYRSHIGPRGSLLSA" CDS complement(join(6058829..6058929,6059030..6059246, 6059772..6059855,6060610..6060717,6060993..6061079, 6061484..6062116)) /locus_tag="TCM_022616" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="ABC transporter B family member 29 isoform 3" /protein_id="EOY08276.1" /db_xref="Phytozome:GSVIVT01033860001" /db_xref="TAIR:AT5G03910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZB8" /translation="MPLHSLILLSPPSQPPLPPPSLHLHLRPTSKPETKFLRFNSPSR LPFIPPLKLINSTKLPLNPQTQQNPLSKTLETLTKLKPFLQTNHQPILLGWLCSSISV FSLLKVIPRIGSFFSNLTNNISISKLGDQGLVLGVLLLAKLVICYWKQVFLWEAALRV VYQMRVFVFEKVLERELGFFEGGNAVSPGDIAYRITAEASDVADTVFALLNTTVPNIL QLFAMATQMLVISPSLSLISEMVIPCMAFVIAYLGERLLKISTRAYLSIATLAAYLNE GIGKAYNELKQGEPAVERLFFLTKLESKVIEKPDAIYLSHVNGEVKFCDVSFKYADNM PHVLDGLNLHIKARETTALVRPSGGGKTTLVKLLLRLYKPSSGSILVDNRNIQNIRLE SLRRHVGLVSQDIVSDQ" CDS complement(join(6058829..6058929,6059030..6059246, 6059772..6059855,6060610..6060717,6060993..6061079, 6061484..6062116)) /locus_tag="TCM_022616" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="ABC transporter B family member 29 isoform 3" /protein_id="EOY08278.1" /db_xref="Phytozome:GSVIVT01033860001" /db_xref="TAIR:AT5G03910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZB8" /translation="MPLHSLILLSPPSQPPLPPPSLHLHLRPTSKPETKFLRFNSPSR LPFIPPLKLINSTKLPLNPQTQQNPLSKTLETLTKLKPFLQTNHQPILLGWLCSSISV FSLLKVIPRIGSFFSNLTNNISISKLGDQGLVLGVLLLAKLVICYWKQVFLWEAALRV VYQMRVFVFEKVLERELGFFEGGNAVSPGDIAYRITAEASDVADTVFALLNTTVPNIL QLFAMATQMLVISPSLSLISEMVIPCMAFVIAYLGERLLKISTRAYLSIATLAAYLNE GIGKAYNELKQGEPAVERLFFLTKLESKVIEKPDAIYLSHVNGEVKFCDVSFKYADNM PHVLDGLNLHIKARETTALVRPSGGGKTTLVKLLLRLYKPSSGSILVDNRNIQNIRLE SLRRHVGLVSQDIVSDQ" gene complement(6063576..6064327) /locus_tag="TCM_022617" /note="dbxref CacaoGD:Thecc1EG022617" mRNA complement(join(6063576..6063915,6064138..6064327)) /locus_tag="TCM_022617" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:28629.m000554" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1896t1" CDS complement(join(6063778..6063915,6064138..6064275)) /locus_tag="TCM_022617" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08280.1" /translation="MADGISDASGETFPAADINGELNPGENKDFKVDSVSFEIATSQE IKDRVEAQEKKEKKDSMQTLKTAILVSAVVVAVAGAAFAITKKLKEK" gene complement(6064425..6070492) /locus_tag="TCM_022618" /note="dbxref CacaoGD:Thecc1EG022618" mRNA complement(join(6064425..6065114,6065284..6065409, 6065489..6065574,6066286..6066361,6066557..6066700, 6066781..6066918,6067093..6067193,6067643..6067745, 6067846..6067971,6068744..6068821,6068905..6069057, 6069256..6069357,6069451..6069518,6069846..6069978, 6070157..6070492)) /locus_tag="TCM_022618" /product="Chloroplast signal recognition particle 54 kDa subunit" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033862001" /inference="similar to AA sequence:Phytozome:POPTR_0016s07950.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc385t8" CDS complement(join(6065007..6065114,6065284..6065409, 6065489..6065574,6066286..6066361,6066557..6066700, 6066781..6066918,6067093..6067193,6067643..6067745, 6067846..6067971,6068744..6068821,6068905..6069057, 6069256..6069357,6069451..6069518,6069846..6069978, 6070157..6070330)) /locus_tag="TCM_022618" /codon_start=1 /product="Chloroplast signal recognition particle 54 kDa subunit" /protein_id="EOY08281.1" /db_xref="Phytozome:POPTR_0016s07950.1" /db_xref="TAIR:AT5G03940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P37107" /translation="MEAMHFPTVASRHFSATSGSFTTNRKFYNSPRKTTLLGSTWSIG SSDFTSLSSRNLFTREIWGWVNSKTVTLRREMRGVVRAEMFGQLTSGLEAAWTKLKGE EVLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSDQAVGVGLIRGVKPDQQLVKI VHDELVKLMGGEVSELVFSKSGPTVILLAGLQGVGKTTVCAKLANYLKKQGKSCMLIA GDVYRPAAIDQLVILGEQVGVPVYTAGTEVKPSEIAKQGLEEAKKKKIDIVIMDTAGR LQIDKAMMDELKEVKKVLNPTEVLLVVDAMTGQEAAALVTTFNVEIGITGAILTKLDG DSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEV MHQEDAEELQKKIMSAKFDFNDFLKQTRAVARMGSMTRVIGMIPGMGKVTPAQVREAE KSLKIMEAMIEAMTPEEREKPELLAESPERRKRVAQGSGKTEQQVSQLVAQLFQMRVR MKNLMGVMEGGSIPTLSNLEDAMKAEQKAPPGTARRKRRSESRRQFADSASTRPSPRG FGAKN" gene 6070546..6073153 /locus_tag="TCM_022619" /note="dbxref CacaoGD:Thecc1EG022619" mRNA 6070546..6073153 /locus_tag="TCM_022619" /product="Pentatricopeptide repeat (PPR) superfamily protein" /inference="alignment:exonerate-protein:2:frave:gene15557" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046928t1" /inference="similar to AA sequence:frave:gene15557" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc703t7" CDS 6070648..6072480 /locus_tag="TCM_022619" /note="dbxref frave:gene15557; paralog of Thecc1EG046928t1" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein" /protein_id="EOY08282.1" /db_xref="TAIR:AT3G11460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CAY1" /translation="MTSIPWNTQLRELAKQCQYLQALTLYRQMLRCGSTPNAFSFPFA LKSSVSLSLPFSGQQLHCHVIKSGCCPEPFVLTSLISMYCKFNSVENARKVFDENPIS NQLTVCYNALLSGYALTFRVFEGFSLFCKMREMGVSVNSVTILGLIPMFSEPGYFSAG MSFHCCCVKLGLNLDFSVSNCLLTMYVKCGAIEFGRKLFDEMPKKGLITWNAMISGYA QNGLASNVLELYKKMKACRNCADAVTFVGVLSSCAHLGAISVGREVEQRIEFSGLSLN PFLNNALINMYARCGNLVKARAIFDGMLVKSVVSWTAIIGGYGMHGYGEIAVELFDEM IKGGIRPDGAAFVSVLCACSHAGLTEKGLDYFVEMETKHRLQPGPEHYSCVVDLLGRA GRLYDALELIKSMQVKPDGAVWGALLGACKIHHNVEIAELAFEQVIELEPTNIGYYVL LSNIYAEAENLEGVLKVRVMMRERNLKKDPGCSHLEYKGRVHLFLCGDRSHPQSVEIY RMVDELETLVRKLVGCKNNQERRSKELFLGMGVHSEKLAIVFGLLNSEPGTEIVVIKN LRVCEDCHLFLKGVSKIVDRQLVVRDATRFHHFRDGLCSCKDYW" gene complement(6073271..6076232) /locus_tag="TCM_022620" /note="dbxref CacaoGD:Thecc1EG022620" mRNA complement(join(6073271..6073708,6073785..6073914, 6074284..6074403,6074514..6074669,6074802..6074903, 6075022..6075089,6075606..6075781,6075993..6076232)) /locus_tag="TCM_022620" /product="4'-phosphopantetheinyl transferase superfamily" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01016776001" /inference="similar to AA sequence:Phytozome:GSVIVT01016776001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09901t00001" CDS complement(join(6073593..6073708,6073785..6073914, 6074284..6074403,6074514..6074669,6074802..6074903, 6075022..6075089,6075606..6075781,6075993..6076069)) /locus_tag="TCM_022620" /codon_start=1 /product="4'-phosphopantetheinyl transferase superfamily" /protein_id="EOY08283.1" /db_xref="Phytozome:GSVIVT01016776001" /db_xref="TAIR:AT3G11470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HXY1" /translation="MNIRCFQRNFSAALPPLVPLQLPSPMETHLWYILPDEVKSVALL NQYSELLSPCERENVNRMCGDQLKKRALLARALVRTTIARYQMNCEINPRSLKFRKNI YGKPEVEWQNEDNFSPLPLHFNISHTTSMIACGVTVNVPIGIDVEEKQRRIKNNITAF AQRYFSPYEVKLLTAISDPEVQCQEFIKLWTLKEAYVKALGKGFSAVPFKTFTIQFRA PAIRNLHPPGISVSEASEEIVESSNDPTNLTNNWQLALLEVAGSHYAAICMERDKTVG GEANMPMKLTVRKTIPFVEDVCVSGTDAVLALGGIIEQ" gene complement(6076517..6080481) /locus_tag="TCM_022621" /note="dbxref CacaoGD:Thecc1EG022621" mRNA complement(join(6076517..6077465,6078040..6078270, 6078554..6078673,6078771..6078891,6079696..6080481)) /locus_tag="TCM_022621" /product="Rho GTPase activating protein with PAK-box/P21-Rho-binding domain" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s07890.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041387t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s22780.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3236t1" CDS complement(join(6076872..6077465,6078040..6078270, 6078554..6078673,6078771..6078891,6079696..6080087)) /locus_tag="TCM_022621" /note="paralog of Thecc1EG041387t1" /codon_start=1 /product="Rho GTPase activating protein with PAK-box/P21-Rho-binding domain" /protein_id="EOY08284.1" /db_xref="Phytozome:POPTR_0006s22780.1" /db_xref="TAIR:AT5G22400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FMR1" /translation="MTEVLQSSPSHFSSPSSSTSTPHALINSSVSTVESIAQDSDQEE ERRQEEERKERDREGDQLSLLTLLVAAFRKSLIGCSISDSKELCSMEIGLPTNVRHVA HVTFDRFHGFLGLPVEFEPEVPRRAPSASANVFGVSTESMQLSFDSRGNSVPTILLLM QRHLYAQGGLQAEGIFRINAENSQEEYVREQLNRGIIPDGIDVHCLAGLIKAWFRELP SGVLDSLPPEQVIQSQSEEECARLVRLLPPTEAALLDWAINLMADVVQLEHLNKMNAR NVAMVFAPNMTQMSDPLTALMYAVQVMNFLKTLIIRTLKEREDSLVDSTPVSRLEPSD KNGQQSSSQLHKDVNEVKNESEGEKVFVAQEPAMESPTHSAEENLTAESNSESFLTSI ENICAGNRSLVDNCPCTVVSQVNSLANGLEEGGLRSTSGKSRTGQSSVSSLKKGSKKV NEWSICHVAGPVEKSKGTKIVGRINSRAELFEAWR" gene 6079796..6080710 /locus_tag="TCM_022622" /note="dbxref CacaoGD:Thecc1EG022622" mRNA join(6079796..6079800,6079994..6080710) /locus_tag="TCM_022622" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc310t30" CDS 6080371..6080601 /locus_tag="TCM_022622" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08285.1" /translation="MKRFEKREDQFRLPQRPFFKQIMGRLLLYSELSYCCSRANEMLP SKHLMQEVFQQPDTWFAGIKEMIIDMIMICIV" gene complement(6080619..6082562) /locus_tag="TCM_022623" /note="dbxref CacaoGD:Thecc1EG022623" mRNA complement(join(6080619..6080976,6081970..6082562)) /locus_tag="TCM_022623" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.61 coverage" CDS complement(join(6080871..6080976,6081970..6082121)) /locus_tag="TCM_022623" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08286.1" /translation="MGTKYTDEEAARPVGFKFETVDLSLSLSSLKVYNGRLRLKFLLH CIGSSTRKHKEETVLLSSEPGVPQTSWDDICQETGGTQMLT" gene complement(6082850..6084698) /locus_tag="TCM_022624" /note="dbxref CacaoGD:Thecc1EG022624" mRNA complement(join(6082850..6083216,6083331..6083452, 6084432..6084454,6084567..6084698)) /locus_tag="TCM_022624" /product="Small nuclear ribonucleoprotein G, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033867001" /inference="similar to AA sequence:Phytozome:GSVIVT01033867001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13633t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13633t1" mRNA complement(join(6083018..6083216,6083331..6083452, 6084414..6084592)) /locus_tag="TCM_022624" /product="Small nuclear ribonucleoprotein G isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033867001" /inference="similar to AA sequence:Phytozome:GSVIVT01033867001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc568t7; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13633t1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc558t4" mRNA complement(join(6083018..6083206,6083327..6083452, 6084414..6084592)) /locus_tag="TCM_022624" /product="Small nuclear ribonucleoprotein G isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033867001" /inference="similar to AA sequence:Phytozome:GSVIVT01033867001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc568t11; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13633t1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc558t4" CDS complement(join(6083154..6083216,6083331..6083452, 6084432..6084454,6084567..6084601)) /locus_tag="TCM_022624" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Small nuclear ribonucleoprotein G, putative isoform 1" /protein_id="EOY08287.1" /db_xref="Phytozome:GSVIVT01033867001" /db_xref="TAIR:AT2G23930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O82221" /translation="MSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVD NTVEVNGNERTDIGMVVIRGNSVVTVEALEPVGKMQ" CDS complement(join(6083154..6083216,6083331..6083452, 6084414..6084450)) /locus_tag="TCM_022624" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Small nuclear ribonucleoprotein G isoform 2" /protein_id="EOY08288.1" /db_xref="Phytozome:GSVIVT01033867001" /db_xref="TAIR:AT2G23930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O82221" /translation="MDKKLQSKFIFIFKLNANRMVVGTLRGFDQFMNLVVDNTVEVNG NERTDIGMVVIRGNSVVTVEALEPVGKMQ" CDS complement(join(6083154..6083206,6083327..6083452, 6084414..6084450)) /locus_tag="TCM_022624" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Small nuclear ribonucleoprotein G isoform 3" /protein_id="EOY08289.1" /db_xref="Phytozome:GSVIVT01033867001" /db_xref="TAIR:AT2G23930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O82221" /translation="MDKKLQSKFIFIFKLNANRMVVGTLRGFDQFMNLVVDNTVEVNG NERTDIGMVVRNSVVTVEALEPVGKMQ" gene complement(6086158..>6086949) /locus_tag="TCM_022625" /note="dbxref CacaoGD:Thecc1EG022625" mRNA complement(6086158..>6086949) /locus_tag="TCM_022625" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is paralog medium, intron is none, protein is utrpoor_complete" CDS complement(6086657..>6086947) /locus_tag="TCM_022625" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08290.1" /translation="ALSFGFPNDQSLLSVEQRESECMSKRGHGSTQSLENEIGWKQGK DRGRRESCCWDVYKSRWPPYLPPPEVLGIESSQGRVYSDTTCHEVITLSPKG" mobile_element complement(6087573..6090189) /note="source:scaffold_2_CACTA_0263 2002 4628" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6091711..6091865) /note="source:CACAO_M_S_E89272_F5_scaffold_8 908 1062" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6091743..6091885 /note="source:CACAO_M_E42514_F40_scaffold_5 15797 15934" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6091886..6091907 /note="source:INTACT169_F14_scaffold_2-int 12408 12524" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(6092641..6095502) /locus_tag="TCM_022626" /note="dbxref CacaoGD:Thecc1EG022626" mRNA complement(join(6092641..6093898,6095447..6095502)) /locus_tag="TCM_022626" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.37 coverage" CDS complement(join(6093312..6093898,6095447..6095501)) /locus_tag="TCM_022626" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08291.1" /translation="MKGEKLKLIKESINQLKEGKEYMKLLKGKPTTPSAKTPLTPPSK ANEPPVSNEMMLNLLVRIDEKLTEQAERDRKLEEKILKIEEMYQNIETSLLKEKEKDM DIETPATTSFKGKVATEIPSSSAEMIATKEFKPHTSDLEVGIEKESADINPFKVFTPA LENEKQGDKIANEVEVEVDVEKDINTEIEQEKKSEAKQEKVTEAEQEENEAKA" mobile_element 6095941..6096011 /note="source:scaffold_2_CACTA_0263 12990 13061" /mobile_element_type="transposon:TIR/CACTA" gene 6099034..6099830 /locus_tag="TCM_022627" /note="dbxref CacaoGD:Thecc1EG022627" mRNA 6099034..6099830 /locus_tag="TCM_022627" /product="SAUR family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033868001" /inference="similar to AA sequence:Phytozome:GSVIVT01033868001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1732t1" CDS 6099240..6099617 /locus_tag="TCM_022627" /codon_start=1 /product="SAUR family protein" /protein_id="EOY08292.1" /db_xref="Phytozome:GSVIVT01033868001" /db_xref="TAIR:AT2G36210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HBY6" /translation="MLGKKIVSLKKLAKKVKGMGGGDREQSQYECLLRQFEEMSPTAS TPSGFFAVYVGEEEERFVVPTSFLSHPLFKMLLEKSYNEYGFEQRNKLVVPCSVSTFQ EVVNAVECCNGKFDFGKLVEEFL" mobile_element 6109674..6110252 /note="source:CACAO_M_E34512_F15_scaffold_5 1650 2228" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6115905..6115999) /note="source:scaffold_2_CACTA_0263 12990 13082" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6115910..6116035) /note="source:CACAO_M_E5899_F5_scaffold_2 1082 1206" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(6116368..6134088) /locus_tag="TCM_022629" /note="dbxref CacaoGD:Thecc1EG022629" mRNA complement(join(6116368..6116485,6131150..6131913, 6131985..6132153,6133037..6134088)) /locus_tag="TCM_022629" /product="GATA zinc finger domain-containing protein C1393.08 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s22750.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022632t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s22750.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00639t00001" mobile_element complement(6121800..6121884) /note="source:scaffold_7_CACTA_0789 16213 16297" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6121810..6122810) /note="source:INTACT197_F50_scaffold_5-int 3292 4237" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6122558..6123525) /note="source:CACAO_M_E33282_F13_scaffold_4 7395 8388" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6123522..6124324) /note="source:CACAO_M_E33282_F13_scaffold_4 6357 7154" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA complement(join(6131241..6131913,6131985..6132146, 6133021..6134063)) /locus_tag="TCM_022629" /product="GATA zinc finger domain-containing protein C1393.08 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s22750.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022632t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s22750.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc123t9; inference alignment:Newbler:10:TSA:cgbaP2_g00639t00001" CDS complement(join(6131447..6131913,6131985..6132153, 6133037..6133837)) /locus_tag="TCM_022629" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG022632t1" /codon_start=1 /product="GATA zinc finger domain-containing protein C1393.08 isoform 1" /protein_id="EOY08293.1" /db_xref="Phytozome:POPTR_0006s22750.1" /db_xref="TAIR:AT3G52610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HBY5" /translation="MSEFDQNPTPKTPEPKVRPAGGTEYSWCRAVPGGTGITVLSLLL SNPPDISLLEAALCRLQVSHPILRSRLHFDTCRNTFSFITHRNPHAKIQSFDLPSTSH ILQSLSGDPNIDSHQFLLEHELNRNSWNLPDGDQADRDVFFVSLYTLSETRWVVVFRL HTSACDRAAAVALLKELLELVGGGRSKVEEIAKGNDEKEVELSLGIEDLIPSGKANKP FWARGVDMLGYSLNSFRLANLNFVDANSARRSQVVRLQMNPDETDGLVAGCKSRGIKL CGALAAAGLIAARSTKAYPEHQREKYAVVTLTDCRSILDPVLGSNHLGFYHSAILNTH DVTAHEQVWELARRCYMSFSNAKNNDKHFTDMNDLNFLMCKAIDNPGLTASSSMRTAF ISVFEDPVIDESNELHQKIGLVDYVGCSSVHGVGPSLAIFDTIQDGCLDCACVYPAPL HSREQMQQLIDSMKSILADAGINVENNS" CDS complement(join(6131447..6131913,6131985..6132146, 6133021..6133837)) /locus_tag="TCM_022629" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG022632t1" /codon_start=1 /product="GATA zinc finger domain-containing protein C1393.08 isoform 2" /protein_id="EOY08294.1" /db_xref="Phytozome:POPTR_0006s22750.1" /db_xref="TAIR:AT3G52610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HBY5" /translation="MSEFDQNPTPKTPEPKVRPAGGTEYSWCRAVPGGTGITVLSLLL SNPPDISLLEAALCRLQVSHPILRSRLHFDTCRNTFSFITHRNPHAKIQSFDLPSTSH ILQSLSGDPNIDSHQFLLEHELNRNSWNLPDGDQADRDVFFVSLYTLSETRWVVVFRL HTSACDRAAAVALLKELLELVGGGRSKVEEIAKGNDEKEVELSLGIEDLIPSGKANKP FWARGVDMLGYSLNSFRLANLNFVDANSARRSQVVRLQMNPDETDGLVAVSDELQSRG IKLCGALAAAGLIAARSTKAYPEHQREKYAVVTLTDCRSILDPVLGSNHLGFYHSAIL NTHDVTAHEQVWELARRCYMSFSNAKNNDKHFTDMNDLNFLMCKAIDNPGLTASSSMR TAFISVFEDPVIDESNELHQKIGLVDYVGCSSVHGVGPSLAIFDTIQDGCLDCACVYP APLHSREQMQQLIDSMKSILADAGINVENNS" mobile_element complement(6138107..6140842) /note="source:CACAO_M_E72689_F143_scaffold_10 212 2950" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6140750..6140842 /note="source:CACAO_Again_on_E205_scaffold_9 5074 5164" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(6143110..6143437) /note="source:CACAO_M_E9829_F42_scaffold_2 517 843" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6143971..6144664 /note="source:scaffold_4_CACTA_0498 7911 8604" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6145640..6146086) /note="source:CACAO_M_E58440_F42_scaffold_9 4968 5408" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6146673..6147056) /note="source:CACAO_M_E58440_F42_scaffold_9 3997 4380" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6147470..6148182) /note="source:INTACT439_F42_scaffold_7-int 2853 3564" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6148283..6148681 /note="source:scaffold_4_CACTA_0498 10942 11339" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6148681..6148897) /note="source:scaffold_9_CACTA_0934 121 337" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6148682..6148738 /note="source:INTACT222_F33_scaffold_7-int 2547 3009" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(6158606..6169702) /locus_tag="TCM_022632" /note="dbxref CacaoGD:Thecc1EG022632" mRNA complement(join(6158606..6159496,6159997..6160165, 6160250..6161477,6169105..6169702)) /locus_tag="TCM_022632" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s07860.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022629t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s07860.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.49 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06011t00001" CDS complement(join(6159027..6159496,6159997..6160165, 6160250..6161068)) /locus_tag="TCM_022632" /note="paralog of Thecc1EG022629t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08295.1" /db_xref="Phytozome:POPTR_0016s07860.1" /db_xref="TAIR:AT3G52610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2HTF1" /translation="MSSQSLNSQTLYPKGRAVGGTEHSWCRAVLGGTGIAVLAVLTSK HPDVSRLRNALHKLQNSHPILRSRLHYDPSASTFSFVTSPSPFVQVKSINHFTTCSIL ENLYNQENQNISPLQLILEHELNQNAWTSTCHHPNNPSFCTKNDVFFASIYALPGARW VLVLRLHASACDRTTAVSLLRELLTLMGTEEEETGSQGQKEMMNKGEVSLAIEDLIPK GKAKKTLWARGVDMLGYSVNSLRLTNLKFKDAKSPRSSQVVRLLISPDDTERILAGCK ARGIKLCGALGAAGLIAAHTSNCRSDHQRKKYGIVTLTDCRSILEPPLSNHHFGFYHS AILNTHVIKGVEKLWELAKKMYTAFTNYKSCNRHFSDMADLNFLMGRAMENPGLTSSS SLRTSLISVFEDTVVDESNDQQKQVGLEDYMGCGSAHGIAPSIAIFDTIRDGQLDCVC IYPSPLHSREQMQELVDNMKCILVDAGKNANAHES" mobile_element complement(6161419..6161797) /note="source:CACAO_on_E279_scaffold_9 8048 8449" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(6161868..6162082) /note="source:CACAO_on_E279_scaffold_9 5 219" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 6165770..6168706 /note="source:CACAO_M_E34517_F33_scaffold_5 1 2937" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6168750..6168994 /note="source:CACAO_M_E34517_F33_scaffold_5 2693 2937" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6170173..6172157 /note="source:CACAO_M_E49809_F2_scaffold_7 1 1991" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6172996..6175872) /note="source:INTACT707_F2_scaffold_1-int 1216 4117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6175847..6175915 /note="source:INTACT722_F2_scaffold_7-int 2911 2976" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6175932..6176788 /note="source:INTACT722_F2_scaffold_7-int 3064 3914" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 6179586..6180698 /locus_tag="TCM_022634" /note="dbxref CacaoGD:Thecc1EG022634" mRNA join(6179586..6180119,6180279..6180485,6180630..6180698) /locus_tag="TCM_022634" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005759t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.20 coverage" CDS join(6179700..6180119,6180279..6180455) /locus_tag="TCM_022634" /note="paralog of Thecc1EG005759t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08296.1" /translation="MNWVNRKESVVYFQAWNGFASSLHNRDVWRMAFYAIVWPLWLTR NDLVFKGKKWDGCQIFDLVKVRMAWWVHARWPQSNVSVNELVRTSNAGVVSRKVGKKR NTEAWKKPQNGWLKFNIDKASEGNLRQSSIRGILEIATWVSNPNEIPWRMKKEIIQIH QLLAKVSEWKISHTLRSTNEEADLLAKGGCTTIEFIVG" gene 6181027..6189675 /locus_tag="TCM_022635" /note="dbxref CacaoGD:Thecc1EG022635" mRNA join(6181027..6181548,6182083..6182591,6182708..6182837, 6182952..6183110,6183223..6183572,6183662..6183800, 6183903..6184000,6184083..6184239,6184815..6184884, 6185007..6185083,6185367..6185420,6185539..6185619, 6185695..6185806,6185893..6185979,6186187..6186362, 6186510..6186671,6186767..6186874,6187153..6187311, 6187378..6187461,6187537..6187742,6187830..6187931, 6188212..6188321,6188721..6188872,6189036..6189675) /locus_tag="TCM_022635" /product="125 kDa kinesin-related protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033871001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041959t1" /inference="similar to AA sequence:ricco:28629.m000562" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc26t17" CDS join(6182533..6182591,6182708..6182837,6182952..6183110, 6183223..6183572,6183662..6183800,6183903..6184000, 6184083..6184239,6184815..6184884,6185007..6185083, 6185367..6185420,6185539..6185619,6185695..6185806, 6185893..6185979,6186187..6186362,6186510..6186671, 6186767..6186874,6187153..6187311,6187378..6187461, 6187537..6187742,6187830..6187931,6188212..6188321, 6188721..6188872,6189036..6189233) /locus_tag="TCM_022635" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28629.m000562; paralog of Thecc1EG041959t1" /codon_start=1 /product="125 kDa kinesin-related protein isoform 1" /protein_id="EOY08297.1" /db_xref="TAIR:AT2G36200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23826" /translation="MSGRHEKEKGVNVQVLLRCRPFSEEELRNNAPQVVTCNEYVREV AVSQNIAGKHIDRVFTFDKVFGPSAQQKDLYEQAVVPIVNEVLEGFNCTIFAYGQTGT GKTYTMEGECKRAKTGPNGELPAEAGVIPRAVKQIFDTLESQNAEYSVKVTFLELYNE EITDLLAPEEISKVALEEKQKKQLPLMEDGKGGVLVRGLEEEIVTSASEIFTLLERGS AKRRTAETLLNKQSSRSHSLFSITIHIKEATPEGEELIKCGKLNLVDLAGSENISRSG ARDGRAREAGEINKSLLTLGRVINALVEHLGHIPYRDSKLTRLLRDSLGGRTKTCIIA TVSPAVHCLEETLSTLDYAHRAKNIKNKPEVNQKMMKSTLIKDLYGEIERLKAEVYAA REKNGVYIPKERYYQEESERKAMADQIEQIGVLLETHQKQLEELQDKYVAQVQQCSDL SGKLETTEKNLNETSKLLANSEEELKKCHYVLREKEFIISEQKKAENALAHQACVLRS DLEKALKDNASLFLKIGREDKLNADNRVVVNNFQLELAQQIGSLCNLVASSVSRQSEH LQSVEKLCHSFMTIHDKAILDMKKKVTAARALHVSHMEAVQNVVRLHKASSNAALEEI STLAFSNVHSIEEFLLSEASKAASMFDDLQGTLATHQGEMALFARELRQRFHVSIEQT KDISDYTNGILDKLSEEALRVQNHAVQADELQMKSIVSFQKAYEEQSKSDAEKLIADM TNLVYSHVRRQKELVDERLVNIRESVVASKTFLDGHVSSMECITTDAKRKWQEFAMQA ENEAKDSADYSAAKHCRMEALLQQCVSTAESAFKHCKHTQESVNEMGSKHVSDITSLI RNASDANEQHDAEVDSTRVAAEQDGLKNIEDTIYYIDSVSEQEQGITSGILDTVKAHG KSLETFQDDHSSQATSIRQRAEETFQQRYLDYEASGTTPTRSEQDVLSKGSIESLRAM PMEALVEEFRENNSYESFEPKELKASLIPRSPLSQIN" mRNA join(<6183547..6183572,6183662..6183800,6183903..6184000, 6184083..6184239,6184815..6184884,6185007..6185083, 6185367..6185420,6185539..6185619,6185695..6185806, 6185893..6185979,6186187..6186362,6186510..6186671, 6186767..6186874,6187153..6187311,6187378..6187461, 6187537..6187742,6187830..6187931,6188212..6188321, 6188721..6188872,6189036..6189079,6189229..6189572) /locus_tag="TCM_022635" /product="125 kDa kinesin-related protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033871001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041959t1" /inference="similar to AA sequence:ricco:28629.m000562" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc16t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc26t17; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13631t2" CDS join(<6183547..6183572,6183662..6183800,6183903..6184000, 6184083..6184239,6184815..6184884,6185007..6185083, 6185367..6185420,6185539..6185619,6185695..6185806, 6185893..6185979,6186187..6186362,6186510..6186671, 6186767..6186874,6187153..6187311,6187378..6187461, 6187537..6187742,6187830..6187931,6188212..6188321, 6188721..6188872,6189036..6189079,6189229..6189301) /locus_tag="TCM_022635" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28629.m000562; paralog of Thecc1EG041959t1" /codon_start=1 /product="125 kDa kinesin-related protein isoform 2" /protein_id="EOY08298.1" /db_xref="TAIR:AT2G36200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O23826" /translation="ETLLNKQSSRSHSLFSITIHIKEATPEGEELIKCGKLNLVDLAG SENISRSGARDGRAREAGEINKSLLTLGRVINALVEHLGHIPYRDSKLTRLLRDSLGG RTKTCIIATVSPAVHCLEETLSTLDYAHRAKNIKNKPEVNQKMMKSTLIKDLYGEIER LKAEVYAAREKNGVYIPKERYYQEESERKAMADQIEQIGVLLETHQKQLEELQDKYVA QVQQCSDLSGKLETTEKNLNETSKLLANSEEELKKCHYVLREKEFIISEQKKAENALA HQACVLRSDLEKALKDNASLFLKIGREDKLNADNRVVVNNFQLELAQQIGSLCNLVAS SVSRQSEHLQSVEKLCHSFMTIHDKAILDMKKKVTAARALHVSHMEAVQNVVRLHKAS SNAALEEISTLAFSNVHSIEEFLLSEASKAASMFDDLQGTLATHQGEMALFARELRQR FHVSIEQTKDISDYTNGILDKLSEEALRVQNHAVQADELQMKSIVSFQKAYEEQSKSD AEKLIADMTNLVYSHVRRQKELVDERLVNIRESVVASKTFLDGHVSSMECITTDAKRK WQEFAMQAENEAKDSADYSAAKHCRMEALLQQCVSTAESAFKHCKHTQESVNEMGSKH VSDITSLIRNASDANEQHDAEVDSTRVAAEQDGLKNIEDTIYYIDSVSEQEQGITSGI LDTVKAHGKSLETFQDDHSSQATSIRQRAEETFQQRYLDYEASGTTPTRSEQELILVA LLPSYVLVQIIFVSVSLV" gene 6189727..6194196 /locus_tag="TCM_022636" /note="dbxref CacaoGD:Thecc1EG022636" mRNA join(6189727..6191865,6191936..6192016,6193028..6194196) /locus_tag="TCM_022636" /product="Pentatricopeptide repeat superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma02g36300.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s07840.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.35 coverage; inference alignment:Newbler:10:TSA:cgbaB_g11080t00001" CDS join(6190108..6191865,6191936..6192016,6193028..6193618) /locus_tag="TCM_022636" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein" /protein_id="EOY08299.1" /db_xref="Phytozome:POPTR_0016s07840.1" /db_xref="TAIR:AT3G12770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIT4" /translation="MLRLTKIQSLLISNQERFRLLSISTLAAIADAQETSPKLQTHMQ NPLESHSSLRVDPKFFISALLNCKNIFEIKHVHAQVVANGLLNNLFVTNKLLYIYLQY GALGEAYAFFDGMRERDPFSWSVMVGGFAKAGDFVNCFRTFRELIRCGVQPDNYTLPF VLRVCRDGMDLLMGSLVHGVVLKSGLCLDHFVSSALVDMYAKCRVMEDARRLFDNMPN KDLVIWTVMIGGYAECGNAKESLVLFEWMREEGVVPDKINIVTVANACAKLGAMHKAR LIHDYVCRMSFSLDVVLGTAMIDMYAKCGSVDCGREIFDRMQEKNVISWSAMIAAYGY HGQGRKALDLFPMMLSSGIMPNRITFVSLFYACSHAGLVDEGLQLFNMMWDEYAVRPD VKHYTCMIDLLGRAGRLDEALNLIENMTIEKDEGLWGAMLAACRIHKHVELAERAAKS LLELQPQNPGHYVLLSNIYANAGRWEDMAKIRNLMTKRSLKKIPGWTWIEVDNKIYQF SVGDKSHPLSKEIHGLLKSMSEKLELAGYIPDTNFVLHDVDEEVKVGILYTHSEKLAI AFGLIATPKGTPIRITKNLRMQIDFTTSTRGFVHVGTTGNWLTWYWQVMYSTETDLTV DSVLPPNFTTAGANFFTYTALRVLIGADLPTAFEILKVSEAEFPALKGQGISYAMLQF PSVSLNPVHSHPHAAELLFLFIGSLEVGFVDEKNVLHIRTLQAGDLFIFPKGVVHYQY NYGQDPAFAISALGSANAGTISLPRSVFSTNIRDDIIAKSFKIDVSTVQKMKASITPK GKGTVKEPFLR" gene complement(6195517..6198201) /locus_tag="TCM_022638" /note="dbxref CacaoGD:Thecc1EG022638" mRNA complement(join(6195517..6196127,6197603..6198201)) /locus_tag="TCM_022638" /product="Cell wall invertase 2, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022647t1" /inference="similar to AA sequence:frave:gene15509" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(6195538..6196127,6197603..6197816)) /locus_tag="TCM_022638" /note="dbxref frave:gene15509; paralog of Thecc1EG022647t1" /codon_start=1 /product="Cell wall invertase 2, putative" /protein_id="EOY08300.1" /db_xref="TAIR:AT3G52600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8W413" /translation="MILFCSSMNTISKFPSLCLLVCYQLVAIINFNNGVEASHRVYPD FQSLSAVSVRQLHRTGYHFQPLKHWINGPMYYKGLCHLFYQYNPKAAVCGNIVWAHSV SKDLLNWQSLELAITPTAPFDIKGFWSGLATILPGYKPVLFYTGIDLRNNEVQNYAVP ENASDPYLRKWNKPSGNSIMVADKGMNARDFRDATTAWQANGYWNLLVGSKSDRTGIA YLLKSKDFKKWTKAQPPLHSAPNTGNVQIFILFQSLVKRAWTHLYKGKM" mobile_element 6196598..6196652 /note="source:scaffold_3_CACTA_0382 1854 1909" /mobile_element_type="transposon:TIR/CACTA" gene 6199222..6202349 /locus_tag="TCM_022639" /note="dbxref CacaoGD:Thecc1EG022639" mRNA join(6199222..6199462,6199644..6199928,6200142..6200474, 6200560..6201054,6201689..6201842,6202145..6202349) /locus_tag="TCM_022639" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(6199325..6199462,6199644..6199928,6200142..6200474, 6200560..6201054,6201689..6201842,6202145..6202215) /locus_tag="TCM_022639" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08301.1" /translation="MEKEYFLEGMKTLLRVRRMNQSLRWSAMSDEEDFEYGSIKGFPS IIIESLRVLLDDPWVIMGHYLTVHPSTPNFSTDMQDLTTVAAWVRFPGILLHMYHKSI LRRITSLIGRLLKIGYNTGAENKGKFARVAVELDLSKPLKAKGNRLKSYVCNQPKIAR LGGSGSRFTVLDMVDSGTSNVDISGAQQTILTNKVQPNPMTNPHDRKVEWSQKSLLTI VANGLTSIGIVPITSLTDTALALQVSKEVELAPKGGLTTWCRKAINCLTVGYLDPLSQ HGPSNLQVEVCVPTITTLDQTKHSVVIPKDKAGDSSAIVHVMDNRSTRLTKAESSGGV ILSKGEEKQSSKIGNIRLQRSSLKKKARAKHNGSQSFSSSLSLLKEKIIQPSINLKEG KVDVGHGALADDECQISLVKEVNMEREKDKPALNLGLGLPSVKGREKSQLWIWGLGYH RLEGEREANVGFGAWVTAGNQTVGFGADHGSDPAVVWASQA" mobile_element 6201955..6204196 /note="source:INTACT157_F155_scaffold_1-int 1059 3263" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 6203447..6207635 /locus_tag="TCM_022640" /note="dbxref CacaoGD:Thecc1EG022640" mRNA join(6203447..6203831,6204163..6205113,6206315..6206382, 6206767..6206872,6207012..6207635) /locus_tag="TCM_022640" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene29597" /inference="similar to AA sequence:frave:gene27482" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(6203726..6203831,6204163..6205113,6206315..6206382, 6206767..6206872,6207012..6207376) /locus_tag="TCM_022640" /note="dbxref frave:gene27482" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08302.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4NCH2" /translation="MMGGFGRTFSIKGYSSDTFIPRHTFHLTSHLYPILVGFPDPRVT TDRGFLHFADDLQRIHHFSIMVLLEQRVSGTIADKVIRSVKFDRSHRVEVIGFLEGIQ VLWIEHLQILIIRNHDQCIHLNVRDGFGESWLLIAVYGHLDHKTKRALWAELSSFAKH VTCPWLLSRDFNAFLYAHEKVGGSSQGSKFCLYFQRLISAYGLIDLGFKGSKYTWKRG LVSERIDWAICNTDWRLKFHEATVQHLPRVKSDHRPLLISLEARGVTDQSLRFQFQAA WLSHSKFSDFVKQNWDSSSDIQGALKKFSDSAHVWNREVFGNIFSEKKRILARLLGIE KELETRQSRYLQELEVKLPSVDQIEIINGMLGDFWACSGEKTHGGKRFGFEKVTIDEQ CLLDETVMATGDSNQDPLGDGLSTQFWKDIWLEDTSFFEQGHVLSIVLSENCCVREFL LDIGEWDREKLAAYLLGDLVNKILMVLPPSLSLKPDTPYWAPSASGVFTVVSTYELLR KDYPNYLGQQSRKWAIAWKWDGP" gene 6208422..6224230 /locus_tag="TCM_022641" /note="dbxref CacaoGD:Thecc1EG022641" mRNA join(6208422..6208588,6219031..6219466,6222053..6222906, 6223016..6223174,6223298..6223536,6223626..6223716, 6223812..6224230) /locus_tag="TCM_022641" /product="Cell wall invertase 2 isoform 2" /inference="alignment:exonerate-protein:2:frave:gene15509" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022647t1" /inference="similar to AA sequence:ricco:28629.m000564" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:PASA:2:TSA:puevd3b021914t1a2; alternateUTRof:Thecc1EG022641t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1327t1" mRNA join(6208422..6208588,6219031..6219458,6221930..6221938, 6222053..6222906,6223016..6223174,6223298..6223536, 6223626..6223716,6223812..6224230) /locus_tag="TCM_022641" /product="Cell wall invertase 2 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene15509" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022647t1" /inference="similar to AA sequence:ricco:28629.m000564" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1327t1" mobile_element 6211840..6211968 /note="source:CACAO_on_E18_scaffold_1 731 863" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(6212162..6215371) /note="source:CACAO_M_E50577_F82_scaffold_7 1 3309" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6215281..6215372 /note="source:CACAO_M_E57113_F85_scaffold_8 3233 3324" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6215373..6215387 /note="source:CACAO_M_S_E5860_F197_scaffold_2 8584 8690" /mobile_element_type="retrotransposon:LTR/Copia" CDS join(6219266..6219458,6221930..6221938,6222053..6222906, 6223016..6223174,6223298..6223536,6223626..6223716, 6223812..6223994) /locus_tag="TCM_022641" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28629.m000564; paralog of Thecc1EG022647t1" /codon_start=1 /product="Cell wall invertase 2 isoform 1" /protein_id="EOY08303.1" /db_xref="TAIR:AT3G52600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8W413" /translation="MEVTKLLSLCILITFLCVDIINLNNGGVDASHKVFPQFQSLNAV SVQQIHRTGYHFQPPKNWINDPNAPMYYDGIYHFFYQYNPKGAVWGNIVWAHSVSKDM INWQALEPALYPSQHFDINGCWSGSATVLPSNKPIILYTGLDPKDRQIQNYAVPANLS DPYLRKWIKPGNNPVVDPEQGVNASAFRDPTTAWWLNGHWRMLVGSKRNHRGMAYLYR SRDFIYWTKAKHPLHSAPHTGMWECPDFYPVLLSGKKGLDPSVLGKHVKHVLKVSLDV TRYDYYTVGTYLSDKDRYVPDNTSVDGWAGLRYDYGNFYASKTFFDPAKKRRILWGWV NESDTTEDDVKKGWAGLQAIPRIVWLDPNQRQLMQWPIEELETLRGKNVKMSHQQLKK GEHIEVKGITAAQADVDVTFHIPNLDKAEPFDHSWTDAQELCVKKGSKVKGEVGPFGL LTLASKNLEEYTPVSFRVFQTSKKHVVLLCSDARSSSLKDGLYKPSFAGFVDVDLADK KLSLRSLIDHSVVESFGAGGKTCITSRVYPTLAVLDNAHLYAFNHGTEPINVENLNAW SMKKPRMNT" mRNA join(6219438..6219458,6221930..6222906,6223016..6223174, 6223298..6223536,6223626..6223716,6223812..6224165) /locus_tag="TCM_022641" /product="Cell wall invertase 2 isoform 2" /inference="alignment:exonerate-protein:2:frave:gene15509" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022647t1" /inference="similar to AA sequence:ricco:28629.m000564" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1326t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1327t1" CDS join(6222058..6222906,6223016..6223174,6223298..6223536, 6223626..6223716,6223812..6223994) /locus_tag="TCM_022641" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28629.m000564; paralog of Thecc1EG022647t1" /codon_start=1 /product="Cell wall invertase 2 isoform 2" /protein_id="EOY08304.1" /db_xref="TAIR:AT3G52600.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8W413" /translation="MYYDGIYHFFYQYNPKGAVWGNIVWAHSVSKDMINWQALEPALY PSQHFDINGCWSGSATVLPSNKPIILYTGLDPKDRQIQNYAVPANLSDPYLRKWIKPG NNPVVDPEQGVNASAFRDPTTAWWLNGHWRMLVGSKRNHRGMAYLYRSRDFIYWTKAK HPLHSAPHTGMWECPDFYPVLLSGKKGLDPSVLGKHVKHVLKVSLDVTRYDYYTVGTY LSDKDRYVPDNTSVDGWAGLRYDYGNFYASKTFFDPAKKRRILWGWVNESDTTEDDVK KGWAGLQAIPRIVWLDPNQRQLMQWPIEELETLRGKNVKMSHQQLKKGEHIEVKGITA AQADVDVTFHIPNLDKAEPFDHSWTDAQELCVKKGSKVKGEVGPFGLLTLASKNLEEY TPVSFRVFQTSKKHVVLLCSDARSSSLKDGLYKPSFAGFVDVDLADKKLSLRSLIDHS VVESFGAGGKTCITSRVYPTLAVLDNAHLYAFNHGTEPINVENLNAWSMKKPRMNT" CDS join(6222058..6222906,6223016..6223174,6223298..6223536, 6223626..6223716,6223812..6223994) /locus_tag="TCM_022641" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:28629.m000564; paralog of Thecc1EG022647t1" /codon_start=1 /product="Cell wall invertase 2 isoform 2" /protein_id="EOY08305.1" /db_xref="TAIR:AT3G52600.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8W413" /translation="MYYDGIYHFFYQYNPKGAVWGNIVWAHSVSKDMINWQALEPALY PSQHFDINGCWSGSATVLPSNKPIILYTGLDPKDRQIQNYAVPANLSDPYLRKWIKPG NNPVVDPEQGVNASAFRDPTTAWWLNGHWRMLVGSKRNHRGMAYLYRSRDFIYWTKAK HPLHSAPHTGMWECPDFYPVLLSGKKGLDPSVLGKHVKHVLKVSLDVTRYDYYTVGTY LSDKDRYVPDNTSVDGWAGLRYDYGNFYASKTFFDPAKKRRILWGWVNESDTTEDDVK KGWAGLQAIPRIVWLDPNQRQLMQWPIEELETLRGKNVKMSHQQLKKGEHIEVKGITA AQADVDVTFHIPNLDKAEPFDHSWTDAQELCVKKGSKVKGEVGPFGLLTLASKNLEEY TPVSFRVFQTSKKHVVLLCSDARSSSLKDGLYKPSFAGFVDVDLADKKLSLRSLIDHS VVESFGAGGKTCITSRVYPTLAVLDNAHLYAFNHGTEPINVENLNAWSMKKPRMNT" gene 6225179..6226635 /locus_tag="TCM_022642" /note="dbxref CacaoGD:Thecc1EG022642" mRNA join(6225179..6225502,6225615..6226635) /locus_tag="TCM_022642" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012389t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.15 coverage" CDS join(6225374..6225502,6225615..6226400) /locus_tag="TCM_022642" /note="paralog of Thecc1EG012389t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08306.1" /translation="MERPLEEIQARGSGIQGWLRALGYGEQVSIQFLLTTLVPEFHGE AFRAAELGNGRLVDGRRIFIKYAAPGKPLFSSKLGRVVNHQWVKSRKELFPKNAPLSY AKILNKGMSHGDQPSNHDVLVCSIQSPVKEKEPPCSQDKVPIEFIEAVSPVNEGTLPI LPINNVPNSRVEDVLLPSEEASIMFNVPLSNMEWVDRSAVRILKQDFLLSGVQSGLAL NGISATVRRVKNFQVLVTFYDKRDMLAIIQHHKDLFELWFEDLIPYKQWWASNAGCKW IKLSGVPIHFWHHNFFIALVSHWDRLLL" mobile_element complement(6226588..6230507) /note="source:CACAO_M_E84523_F247_scaffold_10 1 3900" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6227573..6235584 /note="source:INTACT548_F247_scaffold_9-int 1 7958" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 6235579..6236917 /locus_tag="TCM_022644" /note="dbxref CacaoGD:Thecc1EG022644" mRNA 6235579..6236917 /locus_tag="TCM_022644" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.98 coverage" CDS 6235830..6236315 /locus_tag="TCM_022644" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08307.1" /translation="MVSGECLGSRNLAMSKMDCQESSNVILCVDSTVQGNFVVLFPNS SKIPDKSVTLDVDYNGNSMLPSSKCVDSAIILWMDNIESNVTDSHPIQLSSKPVECFI LSGSKPTVSAVRRRCQIRESIREILFNEAIKDGFGSDNSISDEDIAHRNKIILLEANS T" gene 6237009..6237517 /locus_tag="TCM_022645" /note="dbxref CacaoGD:Thecc1EG022645" mRNA 6237009..6237517 /locus_tag="TCM_022645" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400056291" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.38 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc8277t1" CDS 6237221..6237493 /locus_tag="TCM_022645" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08308.1" /translation="MFKEAWDDSEKSENKGMDICDRLRAIKPKIKAWQKVNYDQVHSH IDLFESDIQCKMVALQESQVDDKLRSDIVKLKTNLWDLYRLEERSW" gene 6239579..6240987 /locus_tag="TCM_022646" /note="dbxref CacaoGD:Thecc1EG022646" mRNA join(6239579..6239650,6239718..6240987) /locus_tag="TCM_022646" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400029787.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031615t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc2077t1" CDS join(6239608..6239650,6239718..6240424) /locus_tag="TCM_022646" /note="paralog of Thecc1EG031615t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08309.1" /translation="MDLESYLGRPSSTKGFISPNSAFCCFCCTEIETVNHLFFSCTES WKIWASWCCIWGISWVALANAWEFFCAWVDLVQDVAKNKIWKMAFFVITWSIWLFRNK MVFNGKSWDELQLMDIIKTRIACWSKARWDNPCLSFLDLFRNLELGAVCPKKKSDKKN LDWIKSLPDELKFNVDGAAKGCFGETGIGGVLRDYEGRIKLQFPKATGRGDSNLAELL AIKEAFLLFAASPWVNSYLLIIESDSSNAVK" gene 6242029..6245268 /locus_tag="TCM_022647" /note="dbxref CacaoGD:Thecc1EG022647" mRNA join(6242029..6242350,6242985..6242993,6243087..6243940, 6244021..6244179,6244281..6244519,6244603..6244699, 6244789..6245268) /locus_tag="TCM_022647" /product="Cell wall invertase 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s22710.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022641t1" /inference="similar to AA sequence:ricco:28629.m000564" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1776t2" CDS join(6242164..6242350,6242985..6242993,6243087..6243940, 6244021..6244179,6244281..6244519,6244603..6244699, 6244789..6244971) /locus_tag="TCM_022647" /note="dbxref ricco:28629.m000564; paralog of Thecc1EG022641t1" /codon_start=1 /product="Cell wall invertase 2" /protein_id="EOY08310.1" /db_xref="TAIR:AT3G52600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8W413" /translation="MEVSKFLLIYLFFCYFCVLSNHNNGVEASHKVYQGLKSKTAVKV KQLHRTGYHFQPPRNWINDPNGPMYYKGIYHLFYQYNPKGAVWGNIVWAHSVSKDLIN WEALEPAIYPSKPFDIKGCWSGSATVLPGNKPVIFYTGIDPQGKQIQNYAIPSNSSDP YLRQWTKPTDNPIAVAGFKMNKTAFRDPTTAWKIDEHWRMLVGGRRNQRGIAHLYRSR DFKKWTKAQHPLHSVPNTGMWECPDFYPVALFGEAGQNTSAFGPNVKHVLKVSLDATR FEYYTLGEYFPSRDKYVVDMDSIDGRDGLRYDYGNFYASKSFFDPVKDRRILWGWANE SDTPQDDVSKGWAGIQTIPRKVWLDPNRKQLLQWPVEEIETLRSQNVRLSEKKLKLGD RIEVEEITAAQADVDVTFSIPNLDKAEPFDPSWTNAQELCSLKGSSVQGGVGPFGLLT LASQKLEEYTPVFFRVFKAQYKHVVLLCSDARSSSLRNIGLYKPSFAGFVDVDLSEKK QLSLRSLIDHSVVESFGAGGKTCITSRVYPTLAVFGDAHLFAFNNGTETIIVDLNAWS MRKPNKMNN" mobile_element 6248692..6248827 /note="source:CACAO_M_S_E5285_F300_scaffold_1 17457 17579" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6252102..6252532 /note="source:CACAO_on_S_E390_scaffold_9 2385 2850" /mobile_element_type="transposon:TIR/Mutator" gene 6253645..6258706 /locus_tag="TCM_022648" /note="dbxref CacaoGD:Thecc1EG022648" mRNA join(6253645..6254582,6255472..6255731,6257156..6257530, 6258491..6258706) /locus_tag="TCM_022648" /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein" /inference="alignment:exonerate- protein:2:ricco:28629.m000566" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022650t1" /inference="similar to AA sequence:ricco:28629.m000566" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3201t2" CDS join(6253749..6254582,6255472..6255731,6257156..6257447) /locus_tag="TCM_022648" /note="dbxref ricco:28629.m000566; paralog of Thecc1EG022650t1" /codon_start=1 /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein" /protein_id="EOY08311.1" /db_xref="TAIR:AT1G03400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HW24" /translation="MAATSSYDRLKELKEFDESKIGVKGLSDSGIKTIPDFFKHPPQT LPDLKSKFSQANTNIPIIDLSNVNSPDHHQKIVNQIKEAAKSWGFFQVINHGIPISVL DETIQAIKAFHEQPYEIKSKYYNRDESNGVTYASNNDLYRSEAACWVDSLKAQMGPKP LDIELLPEICRKEVVEWDLSATKVAETVMELLGEGLGLEPGKFKELTFSQTKYVVGHI YPYCPQPDLTMGITSHTDPGVVTVLLQNQIQGLQVKHEDRWVEVKPALGGLIINVGDF LQIVSNGEYKSVEHRVVANSCKEPRISIVEFFNLSKWKGDGYYGPLPELSSAEKPAIY RNFTTQEFLENFYSKGLDSKSLIQKITIRHEVPWGALKAIFNDYGRVLDIFVSRNPNW DGANFAFLRFGVEEGLKRAVAIGNGESIDGRRVCVTVALEGRNGNTYQRRSDGTTGIQ AWATFHSEMCS" mobile_element complement(6269089..6269183) /note="source:CACAO_M_E52038_F96_scaffold_7 769 870" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6269111..6269280 /note="source:CACAO_M_E5326_F22_scaffold_2 19817 20000" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6269652..6270229 /note="source:CACAO_M_E85923_F17_scaffold_12 13 580" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6270371..6272281) /note="source:CACAO_M_E5627_F4_scaffold_2 17533 19479" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6273180..6274117) /note="source:CACAO_M_E85923_F17_scaffold_12 13620 14527" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6274365..6277362 /note="source:CACAO_M_S_E52191_F143_scaffold_5 1 2998" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6277801..6280484) /note="source:CACAO_M_E24592_F195_scaffold_4 19420 20971" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 6282049..6286695 /locus_tag="TCM_022650" /note="dbxref CacaoGD:Thecc1EG022650" mRNA join(6282049..6283324,6286401..6286695) /locus_tag="TCM_022650" /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein" /inference="alignment:exonerate- protein:2:ricco:28629.m000566.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022648t1" /inference="similar to AA sequence:ricco:28629.m000566" /note="quality class is strong, express is medium, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.34 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3205t1" CDS join(6282491..6283324,6286401..6286664) /locus_tag="TCM_022650" /note="dbxref ricco:28629.m000566; paralog of Thecc1EG022648t1" /codon_start=1 /product="2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein" /protein_id="EOY08312.1" /db_xref="TAIR:AT1G04350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HW24" /translation="MAATSSYDRLKELKEFDESKIGVKGLSDSGIKTIPDFFKHPPQT PPDLKSKSSQGNTNIPVIDLSNVSSPDHRQEIVNQIKEAAKSWGFFQVINHGVPIPVL EETIRAIKAFHEKPREIKSKYYKREESQGVMYASNNDLYRAEVACWHDSLQAWMGPKP LDPEDLPAVCRKEMVTWDLSATKVAETVMGLLSEGLGLEEGKFKDLTFSDARVLVGHI YPHCPQPDLTMGITSHTDPGVVTLLLQNQIPGLQVMHGDEWVNIKPVHGGVIINVGDF LQIVSNGEYKSVQHRVLANSCKEPRISVVEFFNLSKWKGDGYFGPLPELLSAEKPAIY RDFSAQEFLENFYTKGLDSTSLIDKITINHD" mobile_element complement(6283711..6283843) /note="source:scaffold_8_CACTA_0859 16331 16463" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6287742..6290523 /note="source:CACAO_M_E34533_F15_scaffold_5 1 2761" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6290662..6290758 /note="source:scaffold_8_CACTA_0859 16411 16494" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6293626..6294137 /note="source:scaffold_4_CACTA_0493 3926 4440" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6293702..6295474 /note="source:CACAO_M_E5326_F22_scaffold_2 21166 22673" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(6295896..6321903) /locus_tag="TCM_022654" /note="dbxref CacaoGD:Thecc1EG022654" mRNA complement(join(6295896..6295910,6320466..6320513, 6320636..6320653,6321259..6321374,6321478..6321564, 6321662..6321903)) /locus_tag="TCM_022654" /product="Ubiquitin extension protein 1 isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015479t1" /inference="similar to AA sequence:Phytozome:Glyma19g38170.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc873t8; inference alignment:Newbler:10:TSA:cgbaL_g13819t00001" mobile_element complement(6297933..6299828) /note="source:CACAO_M_E85923_F17_scaffold_12 2495 4351" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6301001..6301499 /note="source:CACAO_M_S_E7818_F60_scaffold_2 20996 21468" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6301483..6301773) /note="source:CACAO_M_E5627_F4_scaffold_2 18332 18625" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6304198..6313769 /note="source:CACAO_M_E34534_F369_scaffold_5 1 9558" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6313870..6314792 /note="source:CACAO_M_E34534_F369_scaffold_5 9559 10481" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6316936..6317465) /note="source:INTACT46_F120_scaffold_6-int 2957 3511" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6317605..6318786 /note="source:INTACT1798F_F56_scaffold_10-int 14400 15469" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA complement(join(6320017..6320042,6320169..6320352, 6320447..6320513,6321272..6321374,6321478..6321564, 6321662..6321796)) /locus_tag="TCM_022654" /product="Ubiquitin extension protein 1 isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015479t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033876001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaL_g13819t00001" CDS complement(join(6320326..6320352,6320447..6320513, 6321272..6321374,6321478..6321564,6321662..6321764)) /locus_tag="TCM_022654" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG015479t1" /codon_start=1 /product="Ubiquitin extension protein 1 isoform 1" /protein_id="EOY08313.1" /db_xref="Phytozome:GSVIVT01033876001" /db_xref="TAIR:AT3G52590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P62987" /translation="MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYAR LHPRAVNCRKKKCGHSNQLRPKKKIK" CDS complement(join(6321268..6321374,6321478..6321564, 6321662..6321764)) /locus_tag="TCM_022654" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG015479t1" /codon_start=1 /product="Ubiquitin extension protein 1 isoform 2" /protein_id="EOY08314.1" /db_xref="Phytozome:Glyma19g38170.2" /db_xref="TAIR:AT3G52590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P62987" /translation="MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRK" mobile_element complement(6324245..6324586) /note="source:CACAO_M_E58877_F5_scaffold_9 20428 20737" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6325296..6326425 /note="source:INTACT579_F10_scaffold_3-int 3842 4926" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6325681..6327475 /note="source:CACAO_M_E69938_F9_scaffold_9 4635 6357" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6325922..6327500) /note="source:CACAO_M_E49539_F76_scaffold_7 3077 4623" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6332410..6332518) /note="source:scaffold_1_CACTA_0001 8399 8516" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6332425..6332587 /note="source:CACAO_MITE_S248_scaffold_10 1 171" /mobile_element_type="transposon:TIR/MITE" mobile_element 6332746..6336286 /note="source:INTACT556_F252_scaffold_2-int 2446 5994" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6336335..6340485) /note="source:INTACT556_F252_scaffold_2-int 1824 6018" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6339405..6340772) /note="source:CACAO_M_S_E38315_F276_scaffold_4 20588 21939" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6341052..6341235) /note="source:INTACT157_F155_scaffold_1-int 584 687" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6341315..6341362 /note="source:scaffold_4_CACTA_0505 16303 16351" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6341986..6342236 /note="source:CACAO_MITE_S248_scaffold_10 167 497" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(6342057..6342257) /note="source:CACAO_MITE_S163_scaffold_6 59 250" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(6342150..6342379) /note="source:scaffold_1_CACTA_0005 6718 6946" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6342186..6342743 /note="source:CACAO_on_E27_scaffold_1 19 586" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(6343152..6344776) /locus_tag="TCM_022658" /note="dbxref CacaoGD:Thecc1EG022658" mRNA complement(join(6343152..6343397,6343496..6343625, 6343735..6343820,6344121..6344166,6344244..6344363, 6344765..6344776)) /locus_tag="TCM_022658" /product="Ribosomal protein S11 family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0009s02450.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041374t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021436001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13725t2" CDS complement(join(6343330..6343397,6343496..6343625, 6343735..6343820,6344121..6344166,6344244..6344363, 6344765..6344767)) /locus_tag="TCM_022658" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG041374t1" /codon_start=1 /product="Ribosomal protein S11 family protein isoform 1" /protein_id="EOY08315.1" /db_xref="Phytozome:GSVIVT01021436001" /db_xref="TAIR:AT3G52580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9CAX6" /translation="MSRRKVREPKEENTNLGPAVREGEHVFGVAHIFASFNDTFIHVT DLSGRETMVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGN KTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL" mRNA complement(join(<6343543..6343625,6343735..6343820, 6344121..6344166,6344244..>6344357)) /locus_tag="TCM_022658" /product="Ribosomal protein S11 family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0009s02450.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029500t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021436001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc7747t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13725t2" CDS complement(join(<6343545..6343625,6343735..6343820, 6344121..6344166,6344244..>6344357)) /locus_tag="TCM_022658" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG029500t1" /codon_start=1 /product="Ribosomal protein S11 family protein isoform 2" /protein_id="EOY08316.1" /db_xref="Phytozome:GSVIVT01021436001" /db_xref="TAIR:AT3G52580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GI03" /translation="RKVREPKEENTNLGPAVREGEHVFGVAHIFASFNDTFIHVTDLS GRETMVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTK TPGPGAQ" mobile_element 6345201..6345527 /note="source:scaffold_4_CACTA_0482 6092 6584" /mobile_element_type="transposon:TIR/CACTA" gene 6346176..6347371 /locus_tag="TCM_022659" /note="dbxref CacaoGD:Thecc1EG022659" mRNA 6346176..6347371 /locus_tag="TCM_022659" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.52 coverage" CDS 6346245..6346457 /locus_tag="TCM_022659" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08317.1" /translation="MDILEHFIDIPDDEGDIPEAWPAENLTATMDDVEHIHEAWLEET FMDNTDDGDIDGANRDISILDASFLD" gene complement(6347573..6349976) /locus_tag="TCM_022660" /note="dbxref CacaoGD:Thecc1EG022660" mRNA complement(join(6347573..6348069,6348793..6348905, 6349024..6349262,6349346..6349627)) /locus_tag="TCM_022660" /product="Alpha/beta-Hydrolases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033878001" /inference="similar to AA sequence:Phytozome:GSVIVT01033878001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01779t00001; inference alignment:Newbler:10:TSA:cgbaB_g09615t00001" mRNA complement(join(6347662..6348069,6348178..6348318, 6348793..6348905,6349024..6349262,6349346..6349976)) /locus_tag="TCM_022660" /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033878001" /inference="similar to AA sequence:Phytozome:GSVIVT01033878001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09615t00001" CDS complement(join(6347817..6348069,6348793..6348905, 6349024..6349262,6349346..6349607)) /locus_tag="TCM_022660" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 2" /protein_id="EOY08319.1" /db_xref="Phytozome:GSVIVT01033878001" /db_xref="TAIR:AT3G52570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TJ98" /translation="MARLIRNKVIPSNLSTRFRNSPSSLLTHPQTISKRSLQTLAYEE MQANPNKPYTHTALILHGLLGSARNWRSFSRNLASCLSTSPSSEWRMVLADLRNHGKS AEIEGLDPPHDMVNAAKDLGNLVNSKGWDWPDVVIGHSMGGKVALQFAQSCVNREYGE NVKLPKQLWVLDSVPGKVTSENSDGEVENVLQTLQNLPSMVPSRKEMSYWSLLEHPPK GLEIAIVRAEKSDRWDTDVINQLQRLAGQKGDGSAGKISVHVLPNSGHWVHVDNPKGL LEIVAPKVKCLF" CDS complement(join(6347817..6348069,6348178..6348318, 6348793..6348905,6349024..6349262,6349346..6349607)) /locus_tag="TCM_022660" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /protein_id="EOY08318.1" /db_xref="Phytozome:GSVIVT01033878001" /db_xref="TAIR:AT3G52570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TJ98" /translation="MARLIRNKVIPSNLSTRFRNSPSSLLTHPQTISKRSLQTLAYEE MQANPNKPYTHTALILHGLLGSARNWRSFSRNLASCLSTSPSSEWRMVLADLRNHGKS AEIEGLDPPHDMVNAAKDLGNLVNSKGWDWPDVVIGHSMGGKVALQFAQSCVNREYGE NVKLPKQLWVLDSVPGKVTSENSDGEVENVLQTLQNLPSMVPSRKWLVNHMIELGFSK SLSEWIGTNLKKSGEQETWAFNLEGAVQMFHSYREMSYWSLLEHPPKGLEIAIVRAEK SDRWDTDVINQLQRLAGQKGDGSAGKISVHVLPNSGHWVHVDNPKGLLEIVAPKVKCL F" gene complement(6349947..6353189) /locus_tag="TCM_022661" /note="dbxref CacaoGD:Thecc1EG022661" mRNA complement(join(6349947..6350400,6350490..6350626, 6350813..6350940,6351072..6351148,6351587..6351676, 6351890..6352009,6352333..6352450,6352779..6353189)) /locus_tag="TCM_022661" /product="Chaperone protein dnaJ-related isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s22700.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014816t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s22700.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc502t10; inference alignment:Newbler:10:TSA:cgbaL_g11462t00001" mRNA complement(join(6350026..6350400,6350490..6350626, 6350813..6350940,6351072..6351148,6351590..6351676, 6351890..6352009,6352333..6352450,6352779..6353116)) /locus_tag="TCM_022661" /product="Chaperone protein dnaJ-related isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s22700.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014816t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s22700.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11462t00001" CDS complement(join(6350323..6350400,6350490..6350626, 6350813..6350940,6351072..6351148,6351590..6351676, 6351890..6352009,6352333..6352450,6352779..6352963)) /locus_tag="TCM_022661" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG014816t1" /codon_start=1 /product="Chaperone protein dnaJ-related isoform 1" /protein_id="EOY08320.1" /db_xref="Phytozome:POPTR_0006s22700.1" /db_xref="TAIR:AT5G06130.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYD8" /translation="MTTFHFYSPLLPLPTTSPSFKTLIPLNGNSKFLSSPRHSSPSSF LCFSSKNNPSPSADNNTSNFCIIEGPETVRDFGQMQLQEIEDNIRSRRNRIFLLMEEV RRLRIQQRIKNVKVINENGNEEIDEMPDIPSSIPFLSYVTPKTMKQLYFTSLAFISGI IVFGGLIAPTLELKLGLGGTSYEDFIRNMHLPLQLSQVDPIVASFSGGVVGVISALML IEANNVEQQEKKRCKYCHGNGYLGCAKCSASGVCLNIDPISLSSASGQPLKVPTTQRC PNCSGSGKVMCPTCLCTGMLMASEHDPRIDPFD" CDS complement(join(6350323..6350400,6350490..6350626, 6350813..6350940,6351072..6351148,6351587..6351676, 6351890..6352009,6352333..6352450,6352779..6352963)) /locus_tag="TCM_022661" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG014816t1" /codon_start=1 /product="Chaperone protein dnaJ-related isoform 2" /protein_id="EOY08321.1" /db_xref="Phytozome:POPTR_0006s22700.1" /db_xref="TAIR:AT5G06130.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYD8" /translation="MTTFHFYSPLLPLPTTSPSFKTLIPLNGNSKFLSSPRHSSPSSF LCFSSKNNPSPSADNNTSNFCIIEGPETVRDFGQMQLQEIEDNIRSRRNRIFLLMEEV RRLRIQQRIKNVKVINENGNEEIDEMPDIPSSIPFLSYVTPKTMKQLYFTSLAFISGI IVFGGLIAPTVLELKLGLGGTSYEDFIRNMHLPLQLSQVDPIVASFSGGVVGVISALM LIEANNVEQQEKKRCKYCHGNGYLGCAKCSASGVCLNIDPISLSSASGQPLKVPTTQR CPNCSGSGKVMCPTCLCTGMLMASEHDPRIDPFD" mobile_element complement(6353128..6353263) /note="source:scaffold_2_CACTA_0281 4743 4836" /mobile_element_type="transposon:TIR/CACTA" gene complement(6353324..6354611) /locus_tag="TCM_022662" /note="dbxref CacaoGD:Thecc1EG022662" mRNA complement(join(6353324..6353997,6354291..6354611)) /locus_tag="TCM_022662" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033881001" /inference="similar to AA sequence:frave:gene15657" /note="quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc4337t1_C2" CDS complement(join(6353663..6353997,6354291..6354522)) /locus_tag="TCM_022662" /note="dbxref frave:gene15657" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08322.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SWH6" /translation="MEKPADLKQMLPDGEDGYDAVVVGSGYGGSVAACRLAGVKVCLA EKGRKWEAKDHVSCEDGESEYRCQLWPKGCFVSEIRNGQRNGNGTGIVGEASAATMLR IRSVPGQFPIAKVMKEIDYGEVEEMVQDSMKLSMNFDLGEPPSRLLMHQNLDICKACG NCLAGCPYNAKNSTDKNYLVSAIQAYPL" gene complement(6355140..6358020) /locus_tag="TCM_022663" /note="dbxref CacaoGD:Thecc1EG022663" mRNA complement(join(6355140..6355608,6356580..6356633, 6357511..6358020)) /locus_tag="TCM_022663" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033882001" /inference="similar to AA sequence:ricco:28629.m000573" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaL_g10493t00001" CDS complement(join(6355375..6355608,6356580..6356633, 6357511..6357879)) /locus_tag="TCM_022663" /note="dbxref ricco:28629.m000573" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08323.1" /db_xref="TAIR:AT2G36145.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SWH7" /translation="MDLILIRGSLSHSSSFPTSLMASASRQPLHATGAIPPVQHSFQR VISSLPLVFLEHKKQRLPFTKLSGHYGQRNLIVKLMGKASAGKDDIVPAADDEEDGIS LGTMKLPSNTDLQRFETLLFQWANSLCQGANVPLPIPLKIDKIPGGARLGFITIGDGK TDVLVYIDCLVFPATDGSGPMFRAIRNGPLKDQSPPGEPRIMRSLLQALQKSVEIARV " gene complement(6357980..6362148) /locus_tag="TCM_022664" /note="dbxref CacaoGD:Thecc1EG022664" mRNA complement(join(6357980..6358620,6358709..6358769, 6358959..6359038,6359309..6359377,6359538..6359671, 6359787..6359946,6360407..6360481,6361123..6361256, 6361436..6361571,6361692..6361826,6361938..6362144)) /locus_tag="TCM_022664" /product="Sorting nexin 1 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene15651" /inference="similar to AA sequence:ricco:28629.m000574" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaL_g12051t00001" CDS complement(join(6358411..6358620,6358709..6358769, 6358959..6359038,6359309..6359377,6359538..6359671, 6359787..6359946,6360407..6360481,6361123..6361256, 6361436..6361571,6361692..6361826,6361938..6361949)) /locus_tag="TCM_022664" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28629.m000574" /codon_start=1 /product="Sorting nexin 1 isoform 1" /protein_id="EOY08324.1" /db_xref="TAIR:AT5G06140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FG38" /translation="MITAQRSLSGSSQSPRSPSSQPYLSVSVTDPVKLGNGVQAYISY RVITKTNFPEYQGPEKIVIRRYNDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAE FIEMRRQALDVFVNRIAAHNDLQQSEDLRTFLQADEETMERLRSQETGIFKKKPADFM QILKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYVFELENHLTEAQKHAYRLVKRHKE LGQSLSDFGKAVKLLGACEGQALGKAFSELGAKSETLSVKLQKEAHQLLMNFEEPLKD YVRAVQSIKATIGERANAFRQQCELAETMKLKEINLDKLMLTRSDRVGEAEHEYRELK AESEEATRRFETIVRLMNEEIVRFQEQKTQDMGIAFHEFAKGQARLANSIADAWRSLL PKLEACSST" mRNA complement(join(6358744..6358769,6358959..6359377, 6359538..6359671,6359787..6359946,6360407..6360481, 6361123..6361256,6361436..6361571,6361692..6362148)) /locus_tag="TCM_022664" /product="Sorting nexin 1 isoform 2" /inference="alignment:exonerate-protein:2:frave:gene15651" /inference="similar to AA sequence:frave:gene15651" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc197t5; inference alignment:Newbler:10:TSA:cgbaL_g12051t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc197t1_C2" CDS complement(join(6359276..6359377,6359538..6359671, 6359787..6359946,6360407..6360481,6361123..6361256, 6361436..6361571,6361692..6361835)) /locus_tag="TCM_022664" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene15651" /codon_start=1 /product="Sorting nexin 1 isoform 2" /protein_id="EOY08325.1" /db_xref="TAIR:AT5G06140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FG38" /translation="MEQQRSLSGSSQSPRSPSSQPYLSVSVTDPVKLGNGVQAYISYR VITKTNFPEYQGPEKIVIRRYNDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEF IEMRRQALDVFVNRIAAHNDLQQSEDLRTFLQADEETMERLRSQETGIFKKKPADFMQ ILKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYVFELENHLTEAQKHAYRLVKRHKEL GQSLSDFGKAVKLLGACEGQALGKAFSELGAKSETLSVKLQKEAHQLLMNFEEPLKDY VRAVQSIKVSGAAVLCNI" mobile_element complement(6362354..6363166) /note="source:CACAO_M_E33977_F20_scaffold_4 15644 16547" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6362913..6363799 /note="source:scaffold_1_CACTA_0009 12913 13841" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6363816..6363957 /note="source:CACAO_Mariner_E220_scaffold_9 14917 15053" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(6364128..6364210) /note="source:scaffold_8_CACTA_0858 14213 14296" /mobile_element_type="transposon:TIR/CACTA" gene 6364934..6366182 /locus_tag="TCM_022665" /note="dbxref CacaoGD:Thecc1EG022665" mRNA join(6364934..6365992,6366110..>6366136) /locus_tag="TCM_022665" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene15647" /inference="similar to AA sequence:Phytozome:POPTR_0016s07710.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is medium, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1568t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1568t1" mRNA 6365134..6366182 /locus_tag="TCM_022665" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene15647" /inference="similar to AA sequence:Phytozome:POPTR_0016s07710.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1568t1" CDS join(6365426..6365992,6366110..>6366136) /locus_tag="TCM_022665" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY08327.1" /db_xref="Phytozome:POPTR_0016s07710.1" /translation="MFADPTMDRFLSVTSASSATANDGDELTEDDIFWTTTDFTEQIH HQPPSTTTTNSHNRCPSFSHSSGILAALPETNHCQILYRKPTIPSSSPTVKVGPTIPR PTPQDREYSRKFQQQQSAPVNVPLLSMAVARERNKKFLEVDYYDEDGEQEMLPPHEIV ARGSGVSPKTTFSVLEGVGRTLKGRDLRQAKLDSEVED" CDS 6365426..6366034 /locus_tag="TCM_022665" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY08326.1" /db_xref="Phytozome:POPTR_0016s07710.1" /db_xref="TAIR:AT3G15040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIS4" /translation="MFADPTMDRFLSVTSASSATANDGDELTEDDIFWTTTDFTEQIH HQPPSTTTTNSHNRCPSFSHSSGILAALPETNHCQILYRKPTIPSSSPTVKVGPTIPR PTPQDREYSRKFQQQQSAPVNVPLLSMAVARERNKKFLEVDYYDEDGEQEMLPPHEIV ARGSGVSPKTTFSVLEGVGRTLKGRDLRQVRNAIWRKTGFLD" mobile_element 6366411..6366661 /note="source:scaffold_9_CACTA_0946 17766 18034" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6366625..6366775) /note="source:scaffold_7_CACTA_0795 2886 3031" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6368753..6373596 /note="source:INTACT561_F253_scaffold_5-int 1 4844" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6377287..6377577) /note="source:INTACT120_F22_scaffold_3-int 9352 9641" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6377997..6379927 /note="source:INTACT1421F_F389_scaffold_9-int 7737 9649" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6379951..6380185) /note="source:CACAO_M_S_E64608_F12_scaffold_5 2951 3185" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6382144..6384787) /note="source:CACAO_M_E59641_F12_scaffold_9 10421 13004" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6392238..6393458) /note="source:INTACT293_F14_scaffold_5-int 8680 9902" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6397746..6409607 /note="source:CACAO_M_E34540_F17_scaffold_5 1 11862" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6412561..6412685) /note="source:CACAO_M_E58148_F12_scaffold_9 10826 10952" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6412581..6415214 /note="source:INTACT296_F13_scaffold_9-int 11778 14487" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6418350..6423426 /note="source:INTACT234_F12_scaffold_9-int 1 5063" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6423427..6426443 /note="source:CACAO_M_E34546_F277_scaffold_5 1 5033" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6424757..6431310) /note="source:CACAO_M_E57457_F12_scaffold_9 218 10497" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6431318..6432810) /note="source:CACAO_M_E57457_F12_scaffold_9 218 1703" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6432809..6432939) /note="source:CACAO_M_E9978_F12_scaffold_2 20069 20199" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(6432831..6434336) /locus_tag="TCM_022671" /note="dbxref CacaoGD:Thecc1EG022671" mRNA complement(join(6432831..6433859,6434061..6434140, 6434234..6434336)) /locus_tag="TCM_022671" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.98 coverage" CDS complement(join(6433807..6433859,6434061..6434140, 6434234..6434298)) /locus_tag="TCM_022671" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08328.1" /translation="MLSSLTRSLLFSFIFLFCDLIRGFLEGFPRVSPFFLLGLLFLRH FLDLVKSGEAGMARVMNQLDV" mobile_element complement(6435698..6437854) /note="source:CACAO_M_E14758_F15_scaffold_3 950 3109" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6437956..6438854) /note="source:CACAO_M_E42734_F15_scaffold_5 1 897" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6441685..6441895) /note="source:CACAO_M_E58877_F5_scaffold_9 8157 8342" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6443085..6444264) /note="source:CACAO_M_E58877_F5_scaffold_9 5809 6971" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6446142..6446243 /note="source:INTACT444_F216_scaffold_4-int 4067 4168" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6446727..6448201) /note="source:INTACT1427F_F390_scaffold_9-int 11588 13071" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 6448302..6449538 /locus_tag="TCM_022673" /note="dbxref CacaoGD:Thecc1EG022673" mRNA join(6448302..6449330,6449435..6449538) /locus_tag="TCM_022673" /product="Gag-pro-like protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400024053.11" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014077t1" /inference="similar to AA sequence:Phytozome:Glyma10g23910.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc6926t2" CDS join(6448312..6449330,6449435..6449450) /locus_tag="TCM_022673" /note="paralog of Thecc1EG014077t1" /codon_start=1 /product="Gag-pro-like protein" /protein_id="EOY08329.1" /db_xref="Phytozome:Glyma10g23910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D0E2V7" /translation="MGMYCSMDAIELCLVPDVVIPPKFKVPDFEKYDGTKCPVTHITM YCRRMAAYAHDDKLLIHCFQDSLTGAAAKWYVQLDRNRIHTWKDLARAFVAQYKHVTD MAPDRLSLQNTEKKTTESFKEYAQRWRNVASQVQPPLTEKETTVMFVNTLRAPYYERL VGSATKNFADMVISGEMIETAIKQGKIEGGDMANTRKGGTFKRKEGEAQAITSGQHQG GTYNPYQPYLPYPYYPAVHNTSQNPYPYPPMPNAFPNPYPYNPIQRTPYPPASTPVTA STTQQTTPSNNHTTGESRGWRNKQEKVQFDPIPIPYAELFTQLVANHLVAPLYIEPLK PPFPRWNPEL" gene 6450464..6467580 /locus_tag="TCM_022674" /note="dbxref CacaoGD:Thecc1EG022674" mRNA join(6450464..6450513,6454272..6455093,6456967..6457204, 6467185..6467580) /locus_tag="TCM_022674" /product="RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400038199" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027431t1" /inference="similar to AA sequence:Phytozome:Glyma08g41350.1" /note="quality class is strong-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.30 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc7Loc875t1" mobile_element complement(6453122..6454044) /note="source:CACAO_M_E58877_F5_scaffold_9 10793 11716" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6454145..6455164) /note="source:CACAO_M_E58877_F5_scaffold_9 9713 10732" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(6454419..6455093,6456967..6457173) /locus_tag="TCM_022674" /note="paralog of Thecc1EG027431t1" /codon_start=1 /product="RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H, putative" /protein_id="EOY08330.1" /db_xref="Phytozome:Glyma08g41350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A2Q2J0" /translation="MWGMDVIGLITPKASNGHRFILVAIDYFTKWVEASSYANVTQKV VCKFVQKEIICRYGLPERIITDNASNLNGSMMKEVCAKFKIKHHNSTPYRPKMNGAVE AANKNIKRIIEKMTDIYKDWHEKLPFALHAYRTTVRTSTGATPFSLVYGIEAVLPIEV EIPSLRVLKEVQLEEAEWVNARYEQLNLIEEKRLTALCHGQLYQKRMMRAYDKKAHSR QFREGELRGPIAAEDRRRKEERADGKGTRPIVAEDLSSVGESRLDPRREEEFADARRS PTIDAARSVAGRKGRSR" mobile_element complement(6456034..6456275) /note="source:CACAO_M_E58877_F5_scaffold_9 8618 8867" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6458245..6458749) /note="source:INTACT700_F304_scaffold_7-int 1096 1626" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6459170..6459643) /note="source:CACAO_M_E58877_F5_scaffold_9 17827 18286" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6459944..6460024 /note="source:scaffold_8_CACTA_0859 15851 15931" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6460039..6460209 /note="source:scaffold_8_CACTA_0859 16286 16466" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6463112..6463154) /note="source:CACAO_M_E42514_F40_scaffold_5 134 176" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6463484..6463545) /note="source:CACAO_M_E22186_F143_scaffold_3 9976 10043" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 6464931..6465117 /locus_tag="TCM_022675" /note="dbxref CacaoGD:Thecc1EG022675" mRNA 6464931..6465117 /locus_tag="TCM_022675" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g36010.1.2" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3272t1" CDS 6464933..6465085 /locus_tag="TCM_022675" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08331.1" /translation="MSTSGGNQVGSSTCNFPELSSSLLYAFGEFLDLHYPINIQCMWW WVNLVT" gene 6467630..6469796 /locus_tag="TCM_022676" /note="dbxref CacaoGD:Thecc1EG022676" mRNA join(6467630..6467870,6468369..6468661,6468967..6469796) /locus_tag="TCM_022676" /product="NAC domain containing protein 90" /inference="alignment:exonerate- protein:2:ricco:28629.m000575" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022690t1" /inference="similar to AA sequence:ricco:30032.m000479" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1559t1_C2" CDS join(6467705..6467870,6468369..6468661,6468967..6469290) /locus_tag="TCM_022676" /note="dbxref ricco:30032.m000479; paralog of Thecc1EG022690t1" /codon_start=1 /product="NAC domain containing protein 90" /protein_id="EOY08332.1" /db_xref="TAIR:AT3G44350.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HBX6" /translation="MEDMPPGFRFYPTEEELVSFYLHNKLEGKREDLNRLMDRVIPVV DIYDFNPWDLPHFSVYLCHKDPEQWFFFIPRQESEARGGRPKRLTTSGYWKATGSPGY VYSSNSRPIGVKRTMVFYNGRAPSGKKTEWKMNEYKAIEGEASSPNAAPPTLRQEFSL CRVYKKSKCLRSFDRRPPPGVKIGEAVPRHGNGFGVGKSDHQGTEIADRTTIASSPES SSSGDNHHANRPNQTRESNSSRMVVDDECSFWDLDGFWDPVN" mobile_element 6480919..6480982 /note="source:INTACT296_F13_scaffold_9-int 13175 13239" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6483193..6483550) /note="source:CACAO_M_E58877_F5_scaffold_9 20412 20751" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6483807..6483854) /note="source:INTACT458_F219_scaffold_7-int 17360 17407" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6484023..6484726) /note="source:CACAO_M_E58877_F5_scaffold_9 6696 7416" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6484827..6485030) /note="source:CACAO_M_E58877_F5_scaffold_9 18318 18523" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6485447..6485721) /note="source:CACAO_M_E58877_F5_scaffold_9 15372 15646" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6485826..6486786) /note="source:CACAO_M_E58877_F5_scaffold_9 16972 17919" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6486887..6487315) /note="source:CACAO_M_E58877_F5_scaffold_9 14928 15338" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6487714..6488818) /note="source:CACAO_M_E12044_F76_scaffold_2 12867 13972" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6494067..6494209 /note="source:scaffold_5_CACTA_0606 8031 8170" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6501677..6501709 /note="source:scaffold_5_CACTA_0611 6733 6765" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6501835..6502529) /note="source:CACAO_on_SS_E90_scaffold_6 6118 6816" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(6503895..6504518) /note="source:scaffold_5_CACTA_0611 236 841" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6505168..6505899 /note="source:scaffold_5_CACTA_0611 7221 7951" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6505900..6516438) /note="source:INTACT162_F157_scaffold_6-int 443 10950" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6516439..6519213 /note="source:CACAO_M_S_E52220_F15_scaffold_5 1 2754" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6519214..6519647 /note="source:CACAO_M_E294_F134_scaffold_1 16440 16874" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6519648..6527508 /note="source:scaffold_5_CACTA_0611 7048 15298" /mobile_element_type="transposon:TIR/CACTA" gene 6521451..6525024 /locus_tag="TCM_022680" /note="dbxref CacaoGD:Thecc1EG022680" mRNA join(6521451..6521516,6524080..6525024) /locus_tag="TCM_022680" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400024721.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036594t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc1Loc2735t8" CDS 6524220..6524888 /locus_tag="TCM_022680" /note="paralog of Thecc1EG036594t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08333.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A3AS22" /translation="MNSGVCIKGSFYNDYERDFYGILVYIIELEYFRIRNRVVLFKCH WFDIEKGIKVDPLHGLVKIKCNSILASNEPFVLVAQAHQVYYSSYPSRKRDQRDWWAV FKTKARSRYNIPSSGDGENEIDLNEEVYQEDVSISMNATPSEELDNLTVLASGDYEEV NLLIDDEDNDMQRDEDEEDDMEGDENEDDDEEEDELEDDASETLSDDSDNNEEHEFDY SESE" gene 6525651..6527284 /locus_tag="TCM_022681" /note="dbxref CacaoGD:Thecc1EG022681" mRNA join(6525651..6526118,6526459..6527284) /locus_tag="TCM_022681" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032218t1" /note="quality class is medium-utrpoor, express is medium, homology is paralog strong, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc8Loc4293t1" CDS join(6525870..6526118,6526459..6526551) /locus_tag="TCM_022681" /note="paralog of Thecc1EG032218t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08334.1" /translation="MLSEERNKAMTEAKTNNIRDCKGMSREWITNEIWDLLIDTVWGT KEWKDKSKKTRQNRLKAKEGSIPKHTGGSVPFVVHAKRMEMYNSVISQKYGEDSSSQP EFDLNAWIEAI" mobile_element complement(6527411..6527518) /note="source:scaffold_2_CACTA_0279 8173 8281" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6528647..6529431 /note="source:INTACT624_F277_scaffold_2-int 1 787" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6529432..6530320) /note="source:INTACT202_F170_scaffold_6-int 10058 10942" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6530322..6530617 /note="source:CACAO_M_E53587_F207_scaffold_8 15689 15984" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6531518..6532642 /note="source:CACAO_M_E53587_F207_scaffold_8 9507 10631" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6538929..6539984 /note="source:CACAO_M_E53587_F207_scaffold_8 9612 10667" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6540462..6541256) /note="source:INTACT759_F323_scaffold_6-int 1 790" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6541257..6541486 /note="source:CACAO_M_S_E83372_F14_scaffold_6 14946 15138" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6541443..6550989) /note="source:INTACT202_F170_scaffold_6-int 3 9583" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6550992..6553187 /note="source:CACAO_M_E69283_F22_scaffold_9 8407 10629" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6556072..6566066 /note="source:CACAO_M_E34557_F14_scaffold_5 1 9995" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6570319..6574628) /note="source:scaffold_6_CACTA_0701 1 4323" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6576155..6576322) /note="source:INTACT215F_F14_scaffold_3-int 7474 7641" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6580688..6581751 /note="source:CACAO_M_S_E6027_F12_scaffold_2 6152 7200" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6582200..6583206 /note="source:CACAO_M_S_E6027_F12_scaffold_2 7614 8620" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6584069..6584768 /note="source:CACAO_M_S_E6027_F12_scaffold_2 3935 4632" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6585641..6588747 /note="source:CACAO_M_S_E52236_F51_scaffold_5 1 3107" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6590510..6595804 /note="source:CACAO_M_E3667_F12_scaffold_1 1 5286" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6595792..6596840 /note="source:CACAO_M_E33213_F12_scaffold_4 14727 15775" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6598234..6598360 /note="source:CACAO_M_S_E119615_F3_scaffold_9 17466 17594" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6598659..6599166) /note="source:scaffold_1_CACTA_0011 9045 9552" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6599170..6601266) /note="source:scaffold_1_CACTA_0011 4336 6404" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6601272..6603536) /note="source:CACAO_M_E33526_F15_scaffold_4 843 3106" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6604106..6604515) /note="source:CACAO_M_S_E89942_F15_scaffold_8 1 411" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6604521..6605098) /note="source:scaffold_1_CACTA_0011 3754 4330" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6606509..6607377 /note="source:CACAO_M_S_E6055_F310_scaffold_2 14567 15437" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6607377..6607404) /note="source:INTACT19F_F94_scaffold_1-int 14859 14886" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6607405..6608367 /note="source:CACAO_M_E34565_F323_scaffold_5 1 963" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6608629..6610839 /note="source:CACAO_M_E34565_F323_scaffold_5 964 3162" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6610840..6610951) /note="source:INTACT1818F_F49_scaffold_11-int 429 550" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6610959..6611942) /note="source:CACAO_M_E84995_F60_scaffold_10 751 1733" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6611943..6612709 /note="source:CACAO_M_E52632_F228_scaffold_7 1 767" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6612810..6613008) /note="source:CACAO_M_E11415_F328_scaffold_2 2201 2414" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6615160..6615582 /note="source:CACAO_on_S_E390_scaffold_9 14680 15086" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(6615576..6616341) /note="source:CACAO_M_E84995_F60_scaffold_10 10207 10971" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6616357..6616526) /note="source:INTACT1818F_F49_scaffold_11-int 20119 20256" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6616530..6618097) /note="source:CACAO_M_E43890_F17_scaffold_5 1 1587" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6618099..6618204) /note="source:INTACT19F_F94_scaffold_1-int 1 108" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6621121..6622735) /note="source:CACAO_Again_on_E210_scaffold_9 349 1957" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(6622770..6623147) /note="source:CACAO_Again_on_E210_scaffold_9 1 377" /mobile_element_type="transposon:TIR/hAT" mobile_element 6624172..6625271 /note="source:CACAO_M_E13604_F90_scaffold_3 14800 15658" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6626238..6626634 /note="source:CACAO_M_E43916_F9_scaffold_5 6639 7040" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6629222..6630352) /note="source:scaffold_4_CACTA_0503 3237 4374" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6630255..6630365) /note="source:INTACT261_F189_scaffold_2-int 6135 6243" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(6635833..6635867) /note="source:INTACT261_F189_scaffold_2-int 12364 12398" /mobile_element_type="retrotransposon:LTR/Copia" gene 6639438..6641197 /locus_tag="TCM_022690" /note="dbxref CacaoGD:Thecc1EG022690" mRNA join(6639438..6639875,6640348..6640640,6640740..6641197) /locus_tag="TCM_022690" /product="NAC domain containing protein 90" /inference="alignment:exonerate-protein:2:frave:gene15644" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022676t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s22580.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.39 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc782t1_C2" CDS join(6639710..6639875,6640348..6640640,6640740..6641048) /locus_tag="TCM_022690" /note="paralog of Thecc1EG022676t1" /codon_start=1 /product="NAC domain containing protein 90" /protein_id="EOY08335.1" /db_xref="Phytozome:POPTR_0006s22580.1" /db_xref="TAIR:AT5G22380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HBX6" /translation="MEDMPPGFRFYPTEEELISFYLHHKLESEREDLSRLMDRVIPIV NIYEFNPWDLPQLSLYLCHKDPEQWFFFIPRQESEARGGRPKRLTTTGYWKATGSPGC VYSSTNRPIGVKRTMVFYNGRAPNGRKTEWKMIEYKAIVEAAASSNGATPTLRHEFSL CRVYKKSKCLRSFDRRPPAEGVQIRDPAADNQGQAAVGAAAACHQSPQMAERTISSPE SSSSGDHGNPSQTGESSNSSAMAVDFNEPFWDLLDGF" gene 6642051..6647444 /locus_tag="TCM_022692" /note="dbxref CacaoGD:Thecc1EG022692" mRNA join(6642051..6642174,6645625..6645931,6646483..6646607, 6646671..6647444) /locus_tag="TCM_022692" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.24 coverage" CDS join(6642153..6642174,6645625..6645931,6646483..6646607, 6646671..6646942) /locus_tag="TCM_022692" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08336.1" /translation="MRMKIFHGIDRKSLVPKVGNGAKSSNFWKNMVKPLVNGCDYGNF VVEEMGLSLGNGNNIGFWEEEWIEGFILKKAFPKVYALANKKKGKVAEFGGGTTMVGN GILSCIRIGKEWDGDQVMEPIKVRVAWWIKAKWPKHNLSFSDLARFPSEGCLKFSTNG TSRGNPEDLGIDGPLRDEFGNTLAIFSKAIGWSDSNMAELLATKEAVLLFIASRWNSS HSLILEFDSSNAVKWIQNPMDIP" mobile_element complement(6642848..6642967) /note="source:CACAO_Again_on_E100_scaffold_4 4685 4804" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(6642963..6643631) /note="source:CACAO_Again_on_E100_scaffold_4 2 709" /mobile_element_type="transposon:TIR/hAT" gene 6649635..6650233 /locus_tag="TCM_022694" /note="dbxref CacaoGD:Thecc1EG022694" mRNA 6649635..6650233 /locus_tag="TCM_022694" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.85 coverage" CDS 6649860..6650078 /locus_tag="TCM_022694" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08337.1" /translation="MQTNSPTVSVIFLNVKMRGTPYHARHVYLFLTTMLSFHSLIFSN HSCSQVQPESFMASKNTAIAECYQVDST" gene complement(6650958..6655662) /locus_tag="TCM_022695" /note="dbxref CacaoGD:Thecc1EG022695" mRNA complement(join(6650958..6651482,6651835..6651919, 6652007..6652047,6655026..6655077,6655592..6655662)) /locus_tag="TCM_022695" /product="Vacuolar protein sorting 55 family protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400015569" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015785t2" /inference="similar to AA sequence:Phytozome:POPTR_0006s22570.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3317t1" CDS complement(join(6651299..6651482,6651835..6651919, 6652007..6652047,6655026..6655077,6655592..6655610)) /locus_tag="TCM_022695" /note="paralog of Thecc1EG015785t2" /codon_start=1 /product="Vacuolar protein sorting 55 family protein" /protein_id="EOY08338.1" /db_xref="Phytozome:POPTR_0006s22570.1" /db_xref="TAIR:AT3G11530.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HBX5" /translation="MAMTIEGLLGLLLCFQLVYCYKFWACALYNNWWPMLSALMYVLV PMPCLFFGGGSTQFLISRDGGGWIDAAKFLTGASAVGSFAIPIILRHAHMISTGAMFI EFTSFIIFVCTVLCFHRASLEDDW" mobile_element 6658453..6659744 /note="source:INTACT47_F12_scaffold_3-int 6692 7941" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6659745..6660592 /note="source:scaffold_4_CACTA_0500 10021 10876" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6660590..6661850) /note="source:scaffold_8_CACTA_0857 1 1016" /mobile_element_type="transposon:TIR/CACTA" gene complement(6662597..6665881) /locus_tag="TCM_022696" /note="dbxref CacaoGD:Thecc1EG022696" mRNA complement(join(6662597..6663832,6665351..6665881)) /locus_tag="TCM_022696" /product="TTG1-like protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s22560.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017435t2" /inference="similar to AA sequence:Phytozome:POPTR_0006s22560.2" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g08002t00001" CDS complement(6662778..6663788) /locus_tag="TCM_022696" /note="paralog of Thecc1EG017435t2" /codon_start=1 /product="TTG1-like protein" /protein_id="EOY08339.1" /db_xref="Phytozome:POPTR_0006s22560.2" /db_xref="TAIR:AT1G12910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2QDD4" /translation="MQSPSEKKAGVYTYIGQWPIYSLAWSVRNDKRSRLAIGSFLEDY SNKVELVQFNLDTSDFTTDSRLIFDHPYAPTNLLFFPSENTSNPDMIATSGDYLRLWE IHDDHIELKALFNGNKSSEFNSAITSFDWADFDTRRVATSSVDTTCTIWNIERETVDT QLVAHDKEVFDISWGGFNVFASVSGDGSIRVFDLRDKERSTIIYENPVPETPLLRLEW NKADPRFMATVGMDSNKIVIVDIRFPTIPLVELCKHKGSVNAISWAPFIGKQLCSAGD DSRALIWEAVGSNLRSENGGDMEPEMWYGSAAEINHARWSPVELDWIAIVFLNKLQLL KV" mobile_element 6669014..6669091 /note="source:CACAO_M_E73119_F12_scaffold_10 2174 2250" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6678824..6679896) /note="source:scaffold_6_CACTA_0710 14737 15831" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6679353..6679980) /note="source:CACAO_M_E73087_F12_scaffold_10 9082 10011" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6680545..6681678 /note="source:CACAO_M_E22348_F13_scaffold_3 8202 9335" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6688773..6691767 /note="source:CACAO_M_S_E52255_F7_scaffold_5 1 2995" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6694605..6704762 /note="source:CACAO_M_S_E52257_F12_scaffold_5 1 10158" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6707397..6707802 /note="source:CACAO_M_S_E4413_F3_scaffold_1 16871 17262" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6707891..6709224 /note="source:CACAO_M_S_E4413_F3_scaffold_1 17244 18561" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6713514..6716238) /note="source:CACAO_M_E52239_F256_scaffold_7 19791 22438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6721997..6723541 /note="source:CACAO_M_E34581_F17_scaffold_5 1 1545" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 6728958..6739787 /locus_tag="TCM_022701" /note="dbxref CacaoGD:Thecc1EG022701" mRNA join(6728958..6729472,6730395..6730828,6730945..6731106, 6731272..6731447,6731566..6731641,6732747..6732875, 6733045..6733164,6733254..6733322,6733752..6733833, 6734006..6734100,6734332..6734396,6735412..6735610, 6736243..6736437,6736663..6736757,6736864..6736999, 6737092..6737309,6738033..6738160,6738414..6739787) /locus_tag="TCM_022701" /product="Tetratricopeptide repeat (TPR)-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s22530.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s22530.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3518t1" CDS join(6730421..6730828,6730945..6731106,6731272..6731447, 6731566..6731641,6732747..6732875,6733045..6733164, 6733254..6733322,6733752..6733833,6734006..6734100, 6734332..6734396,6735412..6735610,6736243..6736437, 6736663..6736757,6736864..6736999,6737092..6737309, 6738033..6738160,6738414..6738844) /locus_tag="TCM_022701" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein" /protein_id="EOY08340.1" /db_xref="Phytozome:POPTR_0006s22530.1" /db_xref="TAIR:AT3G11540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HBX3" /translation="MAWTEKDVNGRERDLIVENGFLKEPQSSSGLSISTADATPAQKV FEGKDALSYANILRSRNKFVDALALYDSVLEKDSGSVEAHIGKGICLQMQNMGRPAFE SFAEAIRLDPQNACALTHCGILYKDEGRLVDAAESYQKALRADPSYKPAAECLAIVLT DLGTSLKLAGNTQEGIQKYYEALKIDPHYAPAYYNLGVVYSEMMQYETALGCYEKAAL ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVK LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE ACNNLGVIYKDRDNLDKAVECYQLALSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEK AIIANPTYAEAYNNLGVLYRDAGNISMAITAYEQCLKIDPDSRNAGQNRLLAMNYINE GDDDKLFEAHRDWGRRFMRLYSQYNSWDNPKDPERPLVIGYISPDYFTHSVSYFIEAP LVYHDYGNYQVVVYSAVVKADAKTNRFREKVMKKGGVWRDIYGIDEKKVASMVRDDKI DILVELTGHTANNKLGTMACRPAPVQVTWIGYPNTTGLPSIDYRITDPLADPPDTKQK HVEELVRLRECFLCYTPSPEAGPVSPTPALSNGFITFGSFNNLAKITPKVLQVWARIL CAVPNSRLVVKCKPFCCDSVRQKFLTTLEQLGLESLRVDLLPLILLNHDHMQAYSLMD ISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLSKVGLRHLIAKNEDEYV QLALQLASDVTALQNLRMSLRDLMSKSSVCDGKNFISGLEATYRNMWRRYCKGDVPSL RCMEMLQKEGAPEELTIKTSETERITILKNTSTGSVKSNGFNQIPLPMLNLTSCEENG SQLNQTTNSGKFS" gene complement(6739789..6743308) /locus_tag="TCM_022702" /note="dbxref CacaoGD:Thecc1EG022702" mRNA complement(join(6739789..6740062,6741061..6741145, 6742172..6742305,6742683..6742744,6742836..6742931, 6743049..6743308)) /locus_tag="TCM_022702" /product="Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033892001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041474t2" /inference="similar to AA sequence:Phytozome:Glyma03g35620.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g10106t00001" misc_feature complement(join(6739919..6740966,6741061..6741086)) /locus_tag="TCM_022702" /note="Gene fragment of Thecc1EG022702t1; dbxref gnl|CacaoGD|Thecc1EG022702t1; quality class is mediumpartial-partof is thecc1eg022702t1, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc63t21; dbxref CacaoGD:Thecc1EG022703t1" CDS complement(join(6740017..6740062,6741061..6741145, 6742172..6742305,6742683..6742744,6742836..6742931, 6743049..6743120)) /locus_tag="TCM_022702" /note="paralog of Thecc1EG041474t2" /codon_start=1 /product="Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein" /protein_id="EOY08341.1" /db_xref="Phytozome:Glyma03g35620.1" /db_xref="TAIR:AT2G36130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A2YY42" /translation="MWASSEGGPPEVTLETSMGSFTVELYYKHAPRTCRNFIELSRRG YYDNVKFHRIIKDFIVQGGDPTGTGKGGESIYGPVFDDEIRSELKHTGAGILSMANAG PNTNGSQFFITLSPAPSLDGKHTIFGRVCRGMEIIKRLGSVQTDSNDRPIHDVKILRT SVKD" gene 6743020..6748213 /locus_tag="TCM_022704" /note="dbxref CacaoGD:Thecc1EG022704" mRNA join(6743020..6743668,6743803..6743959,6744103..6744169, 6744364..6744460,6744909..6745058,6745199..6745325, 6746429..6746541,6746641..6746704,6746794..6746891, 6747011..6747099,6747304..6748213) /locus_tag="TCM_022704" /product="Mitochondrial fission protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s07630.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046932t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s07630.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:PASA:2:TSA:puevd3b021975t1a3; inference alignment:Newbler:10:TSA:cgbaB_g07761t00001" mRNA join(6743020..6743668,6743803..6743959,6744103..6744169, 6744364..6744460,6744909..6745058,6745199..6745325, 6746429..6746541,6746641..6746704,6746821..6746891, 6747011..6747099,6747304..6748213) /locus_tag="TCM_022704" /product="Mitochondrial fission protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s07630.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046932t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s07630.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:PASA:2:TSA:puevd3b021975t1a4; inference alignment:Newbler:10:TSA:cgbaB_g07761t00001" mRNA join(6743020..6743668,6743803..6743959,6744103..6744169, 6744364..6744460,6744909..6745058,6745199..6745325, 6746429..6746541,6746641..6746704,6746794..6746887, 6746999..6747099,6747304..6747358) /locus_tag="TCM_022704" /product="Mitochondrial fission protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s07630.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046932t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s07630.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3544t4; inference alignment:Newbler:10:TSA:cgbaB_g07761t00001; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc63t30" mRNA join(6743349..6743668,6743803..6743959,6744103..6744169, 6744364..6744460,6744909..6745058,6745199..6745325, 6746429..6746541,6746641..6746704,6746794..6746887, 6746991..6747099,6747304..6747749) /locus_tag="TCM_022704" /product="Mitochondrial fission protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s07630.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046932t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s07630.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07761t00001" CDS join(6743486..6743668,6743803..6743959,6744103..6744169, 6744364..6744460,6744909..6745058,6745199..6745325, 6746429..6746541,6746641..6746704,6746794..6746887, 6746991..6747099,6747304..6747405) /locus_tag="TCM_022704" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG046932t1" /codon_start=1 /product="Mitochondrial fission protein isoform 1" /protein_id="EOY08342.1" /db_xref="Phytozome:POPTR_0016s07630.1" /db_xref="TAIR:AT5G22350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93YN4" /translation="MRPNRLPEQPVGRRSRAEVFEGVINGAIKRVVVIGNGFSGAESQ CIGLVRALGLSGCHSLYRVTRPRGGINEWLHWLPVSLHKKVNYIIRQIYSRFQMEAKG NEVVPFSVQKTGLSNVLEADAKQIAMMACDTFDKDGPLLVVASGRDTIPVASSIKRLA PENVFVVQIQHPRSQLNRFDLVITPRHDYYPLTPHAQKQIPWFLRRWITPREPPDRCV VLTVGALHQADSPALRSAASVWHYDLSSLPKPLLVVNIGGPTRSCQYGVDLAKQLTAM LQNVLWSCGSLRISFSRRTPEKVSKILLKELSANPKVYIWVGEGPNPHMGHLAWADAF VITADSVSMLSEACTTGKPVYVVGAERCTWKFADFQKSLQERGVVRPFTGKEDISESW GYPPLNDTAEAASQVIKALAERGWTIHR" CDS join(6743486..6743668,6743803..6743959,6744103..6744169, 6744364..6744460,6744909..6745058,6745199..6745325, 6746429..6746541,6746641..6746704,6746794..6746887, 6746999..6747017) /locus_tag="TCM_022704" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG046932t1" /codon_start=1 /product="Mitochondrial fission protein isoform 2" /protein_id="EOY08343.1" /db_xref="Phytozome:POPTR_0016s07630.1" /db_xref="TAIR:AT5G22350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93YN4" /translation="MRPNRLPEQPVGRRSRAEVFEGVINGAIKRVVVIGNGFSGAESQ CIGLVRALGLSGCHSLYRVTRPRGGINEWLHWLPVSLHKKVNYIIRQIYSRFQMEAKG NEVVPFSVQKTGLSNVLEADAKQIAMMACDTFDKDGPLLVVASGRDTIPVASSIKRLA PENVFVVQIQHPRSQLNRFDLVITPRHDYYPLTPHAQKQIPWFLRRWITPREPPDRCV VLTVGALHQADSPALRSAASVWHYDLSSLPKPLLVVNIGGPTRSCQYGVDLAKQLTAM LQNVLWSCGSLRISFSRRTPEKVSKILLKELSANPKVYIWVGEGPNPHMGHLAWADAF VITADSVSMLSEACTTGLCCRS" CDS join(6743486..6743668,6743803..6743959,6744103..6744169, 6744364..6744460,6744909..6745058,6745199..6745325, 6746429..6746541,6746641..6746704,6746794..6746891) /locus_tag="TCM_022704" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG046932t1" /codon_start=1 /product="Mitochondrial fission protein isoform 3" /protein_id="EOY08344.1" /db_xref="Phytozome:POPTR_0016s07630.1" /db_xref="TAIR:AT5G22350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93YN4" /translation="MRPNRLPEQPVGRRSRAEVFEGVINGAIKRVVVIGNGFSGAESQ CIGLVRALGLSGCHSLYRVTRPRGGINEWLHWLPVSLHKKVNYIIRQIYSRFQMEAKG NEVVPFSVQKTGLSNVLEADAKQIAMMACDTFDKDGPLLVVASGRDTIPVASSIKRLA PENVFVVQIQHPRSQLNRFDLVITPRHDYYPLTPHAQKQIPWFLRRWITPREPPDRCV VLTVGALHQADSPALRSAASVWHYDLSSLPKPLLVVNIGGPTRSCQYGVDLAKQLTAM LQNVLWSCGSLRISFSRRTPEKVSKILLKELSANPKVYIWVGEGPNPHMGHLAWADAF VITADSVSMLSEACTTG" CDS join(6743486..6743668,6743803..6743959,6744103..6744169, 6744364..6744460,6744909..6745058,6745199..6745325, 6746429..6746541,6746641..6746704,6746821..6746891) /locus_tag="TCM_022704" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG046932t1" /codon_start=1 /product="Mitochondrial fission protein isoform 4" /protein_id="EOY08345.1" /db_xref="Phytozome:POPTR_0016s07630.1" /db_xref="TAIR:AT5G22350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93YN4" /translation="MRPNRLPEQPVGRRSRAEVFEGVINGAIKRVVVIGNGFSGAESQ CIGLVRALGLSGCHSLYRVTRPRGGINEWLHWLPVSLHKKVNYIIRQIYSRFQMEAKG NEVVPFSVQKTGLSNVLEADAKQIAMMACDTFDKDGPLLVVASGRDTIPVASSIKRLA PENVFVVQIQHPRSQLNRFDLVITPRHDYYPLTPHAQKQIPWFLRRWITPREPPDRCV VLTVGALHQADSPALRSAASVWHYDLSSLPKPLLVVNIGGPTRSCQYGVDLAKQLTAM LQNVLWSCGSLRISFSRRTPEKVSKILLKELSANPKVYIWVGEAWADAFVITADSVSM LSEACTTG" gene 6748828..6749999 /locus_tag="TCM_022705" /note="dbxref CacaoGD:Thecc1EG022705" mRNA join(6748828..6749204,6749311..6749434,6749521..6749999) /locus_tag="TCM_022705" /product="Casparian strip membrane protein RCOM_1259260" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s22510.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041359t1" /inference="similar to AA sequence:ricco:30032.m000471" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc4539t2" CDS join(6748942..6749204,6749311..6749434,6749521..6749736) /locus_tag="TCM_022705" /note="dbxref ricco:30032.m000471; paralog of Thecc1EG041359t1" /codon_start=1 /product="Casparian strip membrane protein RCOM_1259260" /protein_id="EOY08346.1" /db_xref="TAIR:AT5G06200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SX13" /translation="MKSGDHAAIDVPESSAVAKGKAPLIATPREQKSGFKKGLGIFDF LLRLGAIIAALAAAATMGTSDETLPFFTQFFQFEASYDDLPTFMFFVIAMALIGGYLV LSLPFSIVTIVRPHAVAPRLLLFILDIVALTLTTAAGAAAAAIVYLAHNGNPNTNWLA ICQQFGDFCQEVSGAVVASFVTVVVLMSLVLLSGVALKMH" mobile_element 6750860..6752375 /note="source:CACAO_M_E34582_F17_scaffold_5 1 1516" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6755278..6758213 /note="source:CACAO_M_S_E122136_F76_scaffold_10 1327 4264" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6758213..6759552 /note="source:CACAO_M_E42693_F115_scaffold_5 1785 3125" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 6762359..6766158 /locus_tag="TCM_022706" /note="dbxref CacaoGD:Thecc1EG022706" mRNA join(6762359..6762713,6762872..6762912,6763035..6763084, 6763170..6763314,6763847..6763903,6764652..6764775, 6764870..6765334,6765749..6765790,6765876..6766158) /locus_tag="TCM_022706" /product="MRNA-decapping enzyme-like protein" /inference="alignment:exonerate- protein:2:ricco:30032.m000470" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041358t1" /inference="similar to AA sequence:ricco:30032.m000470" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc360t2" CDS join(6762555..6762713,6762872..6762912,6763035..6763084, 6763170..6763314,6763847..6763903,6764652..6764775, 6764870..6765334,6765749..6765790,6765876..6765923) /locus_tag="TCM_022706" /note="dbxref ricco:30032.m000470; paralog of Thecc1EG041358t1" /codon_start=1 /product="MRNA-decapping enzyme-like protein" /protein_id="EOY08347.1" /db_xref="TAIR:AT1G08370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SJF3" /translation="MSQTGKLMPNLDQQSTKMLNLTVLQRIDPFIEEILITAAHVTFY EFNIDSNQWSRKDVEGSLFVVKRNTQPRFQFIVMNRRNTDNLVENLLGDFEYEVQVPY LLYRNAAQEVNGIWFYNPRECEDVANLFSRILNAYSKVPAKPKVSSSKSEFEELEAVP SMSVIEGPLEPPATASPATDAPEDSSFVNFFSAAMNLGTNAPNGANSIQPYHSISTTP LSSHVPPAVSTPASAPSVSSLTLSAPPSLDSLSSSNRVTNLVKPSAFFAPPPSSSSSS LIMPPLSSSMPTASALHPPLNLQRPYGTPMLQPFPPPTPPASLTPGVPPTLHDGPLIS RDKVRDALLMLVQDDQFIDMFYQALQKSGISALTHDSICPDC" gene 6767465..6769378 /locus_tag="TCM_022707" /note="dbxref CacaoGD:Thecc1EG022707" mRNA join(6767465..6767696,6768052..6768120,6768226..6768332, 6768410..6768550,6768639..6768864,6769182..6769363) /locus_tag="TCM_022707" /product="RNA binding family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033897001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041357t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400049108" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:PASA:2:TSA:puevd3b021978t1a3; alternateUTRof:Thecc1EG022707t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc998t3" mRNA join(<6767517..6767696,6768052..6768120,6768265..6768332, 6768410..6768864,6769182..6769363) /locus_tag="TCM_022707" /product="RNA binding family protein isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033897001" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400049108" /note="transcript variant 6; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00096t00003_C2; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc998t3" mRNA join(6767517..6767696,6768052..6768120,6768265..6768332, 6768410..6768550,6768639..6768864,6769182..6769363) /locus_tag="TCM_022707" /product="RNA binding family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033897001" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400049108" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:PASA:2:TSA:puevd3b021978t1a2; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc998t3" CDS join(<6767519..6767696,6768052..6768120,6768265..6768332, 6768410..6768514) /locus_tag="TCM_022707" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="RNA binding family protein isoform 6" /protein_id="EOY08353.1" /db_xref="Phytozome:PGSC0003DMP400049108" /db_xref="TAIR:AT5G06210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TJB4" /translation="GNWQQATQGSWDSACSLLAFAVDMAALRRLITGNPKHSSLIPPT LLICRRGIASKLFVGGLSFYTTEKGLLDAFSQYGQVMEGFGFVTYACEDEAEKAITQM DRRALNGRVIFVDYAKPTSNLGGSPIARGPPDPITKN" mRNA join(6767579..6767696,6768052..6768120,6768226..6768332, 6768410..6768550,6768648..6768864,6769182..6769346) /locus_tag="TCM_022707" /product="RNA binding family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033897001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041357t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400049108" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc998t3" mRNA join(6767584..6767696,6768052..6768120,6768226..6768333, 6768648..6768864,6769182..6769378) /locus_tag="TCM_022707" /product="RNA binding family protein isoform 7" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033897001" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400049108" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc998t7; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc998t3" mRNA join(6767584..6767696,6768052..6768120,6768226..6768332, 6768410..6768677) /locus_tag="TCM_022707" /product="RNA binding family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033897001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041357t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400049108" /note="transcript variant 8; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc986t5; alternateUTRof:Thecc1EG022707t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc998t3" mRNA join(6767584..6767696,6768052..6768120,6768226..6768332, 6768410..6768550,6768639..6768677) /locus_tag="TCM_022707" /product="RNA binding family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033897001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041357t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400049108" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc998t8; alternateUTRof:Thecc1EG022707t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc998t3" mRNA join(6767584..6767696,6768052..6768120,6768265..6768332, 6768410..6768550,6768639..6768677) /locus_tag="TCM_022707" /product="RNA binding family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033897001" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400049108" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc998t1; alternateUTRof:Thecc1EG022707t3; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc998t3" CDS join(6767588..6767696,6768052..6768120,6768226..6768333, 6768648..6768697) /locus_tag="TCM_022707" /note="encoded by transcript variant 7; alternatively spliced" /codon_start=1 /product="RNA binding family protein isoform 7" /protein_id="EOY08354.1" /db_xref="Phytozome:PGSC0003DMP400049108" /db_xref="TAIR:AT5G06210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TJB4" /translation="MAALRRLITGNPKHSSLIPPTLLICRRGIASKLFVGGLSFYTTE KGLLDAFSQYGQVMEAKIVTDRVSGKSKGFGFVTYACEDEAEKAITQMDRRDQSSSPE VCSALESKS" CDS join(6767588..6767696,6768052..6768120,6768226..6768332, 6768410..6768514) /locus_tag="TCM_022707" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG041357t1" /codon_start=1 /product="RNA binding family protein isoform 1" /protein_id="EOY08348.1" /db_xref="Phytozome:PGSC0003DMP400049108" /db_xref="TAIR:AT5G06210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TJB4" /translation="MAALRRLITGNPKHSSLIPPTLLICRRGIASKLFVGGLSFYTTE KGLLDAFSQYGQVMEAKIVTDRVSGKSKGFGFVTYACEDEAEKAITQMDRRALNGRVI FVDYAKPTSNLGGSPIARGPPDPITKN" CDS join(6767588..6767696,6768052..6768120,6768226..6768332, 6768410..6768514) /locus_tag="TCM_022707" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG041357t1" /codon_start=1 /product="RNA binding family protein isoform 1" /protein_id="EOY08349.1" /db_xref="Phytozome:PGSC0003DMP400049108" /db_xref="TAIR:AT5G06210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TJB4" /translation="MAALRRLITGNPKHSSLIPPTLLICRRGIASKLFVGGLSFYTTE KGLLDAFSQYGQVMEAKIVTDRVSGKSKGFGFVTYACEDEAEKAITQMDRRALNGRVI FVDYAKPTSNLGGSPIARGPPDPITKN" CDS join(6767588..6767696,6768052..6768120,6768226..6768332, 6768410..6768514) /locus_tag="TCM_022707" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG041357t1" /codon_start=1 /product="RNA binding family protein isoform 1" /protein_id="EOY08351.1" /db_xref="Phytozome:PGSC0003DMP400049108" /db_xref="TAIR:AT5G06210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TJB4" /translation="MAALRRLITGNPKHSSLIPPTLLICRRGIASKLFVGGLSFYTTE KGLLDAFSQYGQVMEAKIVTDRVSGKSKGFGFVTYACEDEAEKAITQMDRRALNGRVI FVDYAKPTSNLGGSPIARGPPDPITKN" CDS join(6767588..6767696,6768052..6768120,6768226..6768332, 6768410..6768514) /locus_tag="TCM_022707" /note="encoded by transcript variant 8; alternatively spliced; paralog of Thecc1EG041357t1" /codon_start=1 /product="RNA binding family protein isoform 1" /protein_id="EOY08355.1" /db_xref="Phytozome:PGSC0003DMP400049108" /db_xref="TAIR:AT5G06210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TJB4" /translation="MAALRRLITGNPKHSSLIPPTLLICRRGIASKLFVGGLSFYTTE KGLLDAFSQYGQVMEAKIVTDRVSGKSKGFGFVTYACEDEAEKAITQMDRRALNGRVI FVDYAKPTSNLGGSPIARGPPDPITKN" CDS join(6767588..6767696,6768052..6768120,6768265..6768332, 6768410..6768514) /locus_tag="TCM_022707" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="RNA binding family protein isoform 3" /protein_id="EOY08350.1" /db_xref="Phytozome:PGSC0003DMP400049108" /db_xref="TAIR:AT5G06210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TJB4" /translation="MAALRRLITGNPKHSSLIPPTLLICRRGIASKLFVGGLSFYTTE KGLLDAFSQYGQVMEGFGFVTYACEDEAEKAITQMDRRALNGRVIFVDYAKPTSNLGG SPIARGPPDPITKN" CDS join(6767588..6767696,6768052..6768120,6768265..6768332, 6768410..6768514) /locus_tag="TCM_022707" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="RNA binding family protein isoform 3" /protein_id="EOY08352.1" /db_xref="Phytozome:PGSC0003DMP400049108" /db_xref="TAIR:AT5G06210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TJB4" /translation="MAALRRLITGNPKHSSLIPPTLLICRRGIASKLFVGGLSFYTTE KGLLDAFSQYGQVMEGFGFVTYACEDEAEKAITQMDRRALNGRVIFVDYAKPTSNLGG SPIARGPPDPITKN" mobile_element complement(6769681..6771263) /note="source:CACAO_M_E35879_F3_scaffold_5 105 1695" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6771252..6771923) /note="source:CACAO_M_E12058_F3_scaffold_2 5916 6588" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6771924..6775193 /note="source:CACAO_M_E34587_F82_scaffold_5 1 3270" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6775187..6780460 /note="source:CACAO_M_S_E16543_F3_scaffold_2 2290 7591" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6775194..6775231) /note="source:CACAO_M_S_E5285_F300_scaffold_1 6596 6634" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6780757..6782019 /note="source:CACAO_M_E12297_F14_scaffold_3 6346 7610" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6784995..6785361 /note="source:CACAO_M_E44599_F33_scaffold_6 3301 3667" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6785619..6786796) /note="source:INTACT215_F33_scaffold_4-int 4959 6136" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6793706..6794100 /note="source:CACAO_M_S_E119191_F3_scaffold_9 1293 1688" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6795462..6798444) /note="source:CACAO_M_E52905_F288_scaffold_8 1 2982" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(6796785..6802454) /locus_tag="TCM_022711" /note="dbxref CacaoGD:Thecc1EG022711" mRNA complement(join(6796785..6797016,6797674..6797813, 6802437..6802454)) /locus_tag="TCM_022711" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is none, intron is weak, protein is complete" CDS complement(join(6796967..6797016,6797674..6797788)) /locus_tag="TCM_022711" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08356.1" /translation="MAGQRKTKGRTKEEKKNNNPRWENSRENWWISSNQAIKGGESSD KGKEIVPEDR" mobile_element 6801444..6803349 /note="source:CACAO_M_E297_F134_scaffold_1 1 1902" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6803350..6804092) /note="source:CACAO_M_E33986_F15_scaffold_4 2363 3103" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6806180..6806448) /note="source:CACAO_M_E29187_F15_scaffold_4 1 269" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6806449..6807511 /note="source:CACAO_M_E4514_F134_scaffold_2 1899 2966" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6807470..6807516 /note="source:CACAO_M_E14081_F316_scaffold_3 13581 13626" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6810651..6811643 /note="source:CACAO_M_E49143_F273_scaffold_6 4290 4821" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6814605..6816302 /note="source:CACAO_M_E49143_F273_scaffold_6 1437 2658" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6816260..6816310) /note="source:scaffold_4_CACTA_0498 7853 7904" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6816301..6821452 /note="source:CACAO_M_E48667_F42_scaffold_6 4823 9907" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6818354..6825267) /note="source:INTACT135_F42_scaffold_4-int 6335 13238" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6825108..6825304 /note="source:CACAO_M_E47321_F141_scaffold_6 5883 6079" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6825303..6827089 /note="source:CACAO_M_S_E66227_F42_scaffold_5 1317 3107" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6827017..6827106) /note="source:CACAO_M_E12297_F14_scaffold_3 13993 14078" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6832198..6832248) /note="source:scaffold_3_CACTA_0382 1862 1912" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6833918..6834122) /note="source:INTACT454F_F360_scaffold_4-int 3 209" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6833940..6835556 /note="source:CACAO_M_E48290_F15_scaffold_6 1 1623" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6835557..6837314 /note="source:CACAO_M_E42911_F15_scaffold_5 1 1758" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6837415..6837746 /note="source:CACAO_M_E48145_F15_scaffold_6 1786 2117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6838195..6839254 /note="source:CACAO_M_E52576_F245_scaffold_7 8986 9521" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6839355..6840340 /note="source:INTACT584_F15_scaffold_3-int 10329 11289" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(6840491..6841844) /locus_tag="TCM_022715" /note="dbxref CacaoGD:Thecc1EG022715" mRNA complement(join(6840491..6841410,6841523..6841844)) /locus_tag="TCM_022715" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc5642t2_C1" CDS complement(join(6841395..6841410,6841523..6841830)) /locus_tag="TCM_022715" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08357.1" /translation="MLLILCHEPFRCHEASPLSSQAMPCESCSVLSPALPCGGCPVLS HTAKPFFSRLELCHGRGSAMLSRAVKPLFSHPKLCPTDVLPCLTLSDLSRACPFLSTN RIVGL" mobile_element 6843203..6846323 /note="source:CACAO_M_S_E52279_F51_scaffold_5 1 3121" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6847912..6851110 /note="source:CACAO_M_E34599_F328_scaffold_5 1 3199" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6851634..6851683 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3196 3245" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(6851741..6853524) /locus_tag="TCM_022716" /note="dbxref CacaoGD:Thecc1EG022716" mRNA complement(6851741..6853524) /locus_tag="TCM_022716" /product="F-box family protein, putative" /inference="alignment:exonerate-protein:2:frave:gene15632" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041346t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s22490.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2290t1_C1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2290t1_C2" CDS complement(6852260..6853471) /locus_tag="TCM_022716" /note="paralog of Thecc1EG041346t1" /codon_start=1 /product="F-box family protein, putative" /protein_id="EOY08358.1" /db_xref="Phytozome:POPTR_0006s22490.1" /db_xref="TAIR:AT2G36090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NEF0" /translation="MALSSLNAKERAFYQILGLPSSSYYYINLKLQILRPNTQKKQLL SKQKNVNTMAGSSTSPPQAALCSPDIHIVGQNTTATISTLHPDIIETHILTRLDGTTL ASASCASTHLRTLTSQENLWTNICHSMWPSTTYPRVRHVISHFPNGSRSFFSDAFPLA TEPVCFGNPSENSDLPSELISAVDIYYKKELIFSKVVETETVTAWFKCSPFRVDLLDP KEAVSTRIPHPDTEDTCRDLEEDMELSWILIDPIGKRAMNISSQRPVAVHPHWLSREL QVKFAAVVAGGESETATELVQCGVVVTCGVSAGGEMHVTEVSLQVEDMDGMFLNGRDS LVILKKGLEGERGKRKKREAERKQEFLKFSERKRERKEKKLRREGTLDMLCVAIGGLA FGSLGLFLLLR" mobile_element complement(6859616..6859867) /note="source:CACAO_M_S_E66657_F76_scaffold_5 8269 8525" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6859868..6864575) /note="source:CACAO_M_S_E37995_F197_scaffold_4 119 5504" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6864576..6864789 /note="source:CACAO_M_S_E99001_F76_scaffold_9 5132 5366" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6865197..6865823 /note="source:CACAO_M_S_E4911_F76_scaffold_1 2971 3596" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6868907..6873160) /note="source:CACAO_M_E5390_F15_scaffold_2 1862 6145" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6875116..6875470) /note="source:CACAO_M_E4554_F15_scaffold_2 7602 7956" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6876432..6876578 /note="source:CACAO_M_E4396_F76_scaffold_2 5577 5709" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 6877920..6888772 /locus_tag="TCM_022719" /note="dbxref CacaoGD:Thecc1EG022719" mRNA join(6877920..6878147,6878962..6879436,6879790..6879881, 6880541..6880705,6880806..6881199,6881521..6881639, 6881736..6881808,6881899..6882122,6882216..6882260, 6883625..6883700,6884552..6884743,6885532..6885635, 6885769..6885859,6886002..6886146,6886320..6886446, 6887257..6887427,6887956..6888772) /locus_tag="TCM_022719" /product="LETM1-like protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033899001" /inference="similar to AA sequence:Phytozome:GSVIVT01033899001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc412t9; alternateUTRof:Thecc1EG022719t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc412t7; inference alignment:Newbler:10:TSA:cgbaB_g04232t00001" mRNA join(6877920..6878147,6878962..6879436,6879790..6879881, 6880541..6880705,6880806..6881199,6881521..6881639, 6881736..6881808,6881899..6882122,6882216..6882260, 6883625..6883700,6884552..6884743,6885532..6885635, 6885769..6885859,6886002..6886146,6886320..6886446, 6887257..6887427,6887956..6888015,6888097..6888772) /locus_tag="TCM_022719" /product="LETM1-like protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033899001" /inference="similar to AA sequence:Phytozome:GSVIVT01033899001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc412t14; alternateUTRof:Thecc1EG022719t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc412t7; inference alignment:Newbler:10:TSA:cgbaB_g04232t00001" mRNA join(6877920..6878147,6878962..6879436,6879790..6879881, 6880541..6880705,6880806..6881199,6881521..6881639, 6881736..6881808,6881899..6882122,6882216..6882260, 6883625..6883700,6884552..6884743,6885532..6885635, 6885769..6885859,6886002..6886146,6886320..6886446, 6887257..6887427,6887956..6888015,6888097..6888258, 6888391..6888772) /locus_tag="TCM_022719" /product="LETM1-like protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033899001" /inference="similar to AA sequence:Phytozome:GSVIVT01033899001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc412t7; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc412t7" mRNA join(6877920..6878147,6878962..6879436,6879790..6879881, 6880541..6880705,6880806..6881199,6881521..6881639, 6881736..6881808,6881899..6882122,6882216..6882260, 6883625..6883700,6884552..6884743,6886120..6886148, 6886321..6886567) /locus_tag="TCM_022719" /product="LETM1-like protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033899001" /inference="similar to AA sequence:Phytozome:GSVIVT01033899001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc396t6; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc412t7; inference alignment:Newbler:10:TSA:cgbaB_g04232t00001" CDS join(6878107..6878147,6878962..6879436,6879790..6879881, 6880541..6880705,6880806..6881199,6881521..6881639, 6881736..6881808,6881899..6882122,6882216..6882260, 6883625..6883700,6884552..6884743,6885532..6885635, 6885769..6885859,6886002..6886146,6886320..6886432) /locus_tag="TCM_022719" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="LETM1-like protein isoform 1" /protein_id="EOY08359.1" /db_xref="Phytozome:GSVIVT01033899001" /db_xref="TAIR:AT3G11560.4" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HBW8" /translation="MSIKFHHRCFVSSRSSNPWILWNSFGAHVCCKRIANLDYLLTNW GNLRKNCLIRQTLSDSHRLVAYRKTFSALPKSRRKGLHSPLASAEDGVTVNGSPQTST STDVDEIRVKLNQSLQGEDYSNGLVQSLHDAARVFELAIKEQGSLSKMSWFSTAWLGV DRNAWVKTLSYQAAVYSLLQAASEISSRGDSRDRDINVFVQRSLLRQSAPLESLIREK LSAKQPEAYDWFWTEQVPAVVISFVHYFEGDLWYTAATDVCGKGKSLGAGSSSDKALL MLALTCVAATTKLGPAKISCSHFFSMIPDLSGRLMDMLVDFIPIHQAYHSIRDIGLRR EFLVHFGPRAAACRVENDQDSEEVIFWVDLVQKQLQQAIDREKIWSRLTTSESIEVLE RDLTIFGFFIALGRNTQAFLSANGFDVIDDPVEGFIRYLIGGSVLYYPQLSSISSYQL YVEVVCEELDWLPFYPSNVDTAKQSHGHKSKREGPPNITATSQALDVCSHWTQSFIKY SRWLENPSSNVKAARFLSRGHNKLMECMEELGIPERAMVETSSVGRTGLATEEQSDSF DKALESVEEALKRLENLLQELHVSRSYSGKEQLKAACSDLEKIRKLKKEAEFLEASFR AKEAFFRQDDGDGSSQSSVSEQQQYPKTKPRKSATVTNDRSNRVVNNSRGLWSLLTRP PIRNPDTESSAAEKLGNEFIEENTSNIGIADSEPNELRRFEQLRNELIELEKRVKRSA DQSAYGVLRLEMIIISLLMMLGVLNWLRFRRKKESLKNHWTR" CDS join(6878107..6878147,6878962..6879436,6879790..6879881, 6880541..6880705,6880806..6881199,6881521..6881639, 6881736..6881808,6881899..6882122,6882216..6882260, 6883625..6883700,6884552..6884743,6885532..6885635, 6885769..6885859,6886002..6886146,6886320..6886432) /locus_tag="TCM_022719" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="LETM1-like protein isoform 1" /protein_id="EOY08360.1" /db_xref="Phytozome:GSVIVT01033899001" /db_xref="TAIR:AT3G11560.4" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HBW8" /translation="MSIKFHHRCFVSSRSSNPWILWNSFGAHVCCKRIANLDYLLTNW GNLRKNCLIRQTLSDSHRLVAYRKTFSALPKSRRKGLHSPLASAEDGVTVNGSPQTST STDVDEIRVKLNQSLQGEDYSNGLVQSLHDAARVFELAIKEQGSLSKMSWFSTAWLGV DRNAWVKTLSYQAAVYSLLQAASEISSRGDSRDRDINVFVQRSLLRQSAPLESLIREK LSAKQPEAYDWFWTEQVPAVVISFVHYFEGDLWYTAATDVCGKGKSLGAGSSSDKALL MLALTCVAATTKLGPAKISCSHFFSMIPDLSGRLMDMLVDFIPIHQAYHSIRDIGLRR EFLVHFGPRAAACRVENDQDSEEVIFWVDLVQKQLQQAIDREKIWSRLTTSESIEVLE RDLTIFGFFIALGRNTQAFLSANGFDVIDDPVEGFIRYLIGGSVLYYPQLSSISSYQL YVEVVCEELDWLPFYPSNVDTAKQSHGHKSKREGPPNITATSQALDVCSHWTQSFIKY SRWLENPSSNVKAARFLSRGHNKLMECMEELGIPERAMVETSSVGRTGLATEEQSDSF DKALESVEEALKRLENLLQELHVSRSYSGKEQLKAACSDLEKIRKLKKEAEFLEASFR AKEAFFRQDDGDGSSQSSVSEQQQYPKTKPRKSATVTNDRSNRVVNNSRGLWSLLTRP PIRNPDTESSAAEKLGNEFIEENTSNIGIADSEPNELRRFEQLRNELIELEKRVKRSA DQSAYGVLRLEMIIISLLMMLGVLNWLRFRRKKESLKNHWTR" CDS join(6878107..6878147,6878962..6879436,6879790..6879881, 6880541..6880705,6880806..6881199,6881521..6881639, 6881736..6881808,6881899..6882122,6882216..6882260, 6883625..6883700,6884552..6884743,6885532..6885635, 6885769..6885859,6886002..6886146,6886320..6886432) /locus_tag="TCM_022719" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="LETM1-like protein isoform 1" /protein_id="EOY08361.1" /db_xref="Phytozome:GSVIVT01033899001" /db_xref="TAIR:AT3G11560.4" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HBW8" /translation="MSIKFHHRCFVSSRSSNPWILWNSFGAHVCCKRIANLDYLLTNW GNLRKNCLIRQTLSDSHRLVAYRKTFSALPKSRRKGLHSPLASAEDGVTVNGSPQTST STDVDEIRVKLNQSLQGEDYSNGLVQSLHDAARVFELAIKEQGSLSKMSWFSTAWLGV DRNAWVKTLSYQAAVYSLLQAASEISSRGDSRDRDINVFVQRSLLRQSAPLESLIREK LSAKQPEAYDWFWTEQVPAVVISFVHYFEGDLWYTAATDVCGKGKSLGAGSSSDKALL MLALTCVAATTKLGPAKISCSHFFSMIPDLSGRLMDMLVDFIPIHQAYHSIRDIGLRR EFLVHFGPRAAACRVENDQDSEEVIFWVDLVQKQLQQAIDREKIWSRLTTSESIEVLE RDLTIFGFFIALGRNTQAFLSANGFDVIDDPVEGFIRYLIGGSVLYYPQLSSISSYQL YVEVVCEELDWLPFYPSNVDTAKQSHGHKSKREGPPNITATSQALDVCSHWTQSFIKY SRWLENPSSNVKAARFLSRGHNKLMECMEELGIPERAMVETSSVGRTGLATEEQSDSF DKALESVEEALKRLENLLQELHVSRSYSGKEQLKAACSDLEKIRKLKKEAEFLEASFR AKEAFFRQDDGDGSSQSSVSEQQQYPKTKPRKSATVTNDRSNRVVNNSRGLWSLLTRP PIRNPDTESSAAEKLGNEFIEENTSNIGIADSEPNELRRFEQLRNELIELEKRVKRSA DQSAYGVLRLEMIIISLLMMLGVLNWLRFRRKKESLKNHWTR" CDS join(6878107..6878147,6878962..6879436,6879790..6879881, 6880541..6880705,6880806..6881199,6881521..6881639, 6881736..6881808,6881899..6882122,6882216..6882260, 6883625..6883700,6884552..6884743,6886120..6886148, 6886321..6886432) /locus_tag="TCM_022719" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="LETM1-like protein isoform 4" /protein_id="EOY08362.1" /db_xref="Phytozome:GSVIVT01033899001" /db_xref="TAIR:AT3G11560.4" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HBW8" /translation="MSIKFHHRCFVSSRSSNPWILWNSFGAHVCCKRIANLDYLLTNW GNLRKNCLIRQTLSDSHRLVAYRKTFSALPKSRRKGLHSPLASAEDGVTVNGSPQTST STDVDEIRVKLNQSLQGEDYSNGLVQSLHDAARVFELAIKEQGSLSKMSWFSTAWLGV DRNAWVKTLSYQAAVYSLLQAASEISSRGDSRDRDINVFVQRSLLRQSAPLESLIREK LSAKQPEAYDWFWTEQVPAVVISFVHYFEGDLWYTAATDVCGKGKSLGAGSSSDKALL MLALTCVAATTKLGPAKISCSHFFSMIPDLSGRLMDMLVDFIPIHQAYHSIRDIGLRR EFLVHFGPRAAACRVENDQDSEEVIFWVDLVQKQLQQAIDREKIWSRLTTSESIEVLE RDLTIFGFFIALGRNTQAFLSANGFDVIDDPVEGFIRYLIGGSVLYYPQLSSISSYQL YVEVVCEELDWLPFYPSNVDTAKQSHGHKSKREGPPNITATSQALDVCSHWTQSFIKY SRWLENPSSNVKAARFLSRGHNKLMECMEELGIPERAMVETSSVGRTGLATEEQSDSF DKALESVEEALKRLENLLQELHVSRSYSGKEQLKAACSDLEKIRKLKKEAEFLEASFR AKEAFFRQKEVLISQHMRVLRLEMIIISLLMMLGVLNWLRFRRKKESLKNHWTR" gene complement(6888273..6905189) /locus_tag="TCM_022720" /note="dbxref CacaoGD:Thecc1EG022720" mRNA complement(join(6888273..6888647,6888912..6889070, 6889168..6889557,6889961..6890402,6893283..6893448, 6905042..6905189)) /locus_tag="TCM_022720" /product="Trichome birefringence-like 8, putative" /inference="alignment:exonerate- protein:2:ricco:30032.m000464" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020540t1" /inference="similar to AA sequence:ricco:30032.m000464" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc406t11_C1" CDS complement(join(6888320..6888647,6888912..6889070, 6889168..6889557,6889961..6890343)) /locus_tag="TCM_022720" /note="dbxref ricco:30032.m000464; paralog of Thecc1EG020540t1" /codon_start=1 /product="Trichome birefringence-like 8, putative" /protein_id="EOY08363.1" /db_xref="TAIR:AT3G11570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIQ9" /translation="MDQVTTPTRHQLPSTPVIIKRELCYTLFFVSILISSIILFNLGG SSEQLVFFRFGFFSQKLKPDQQRPSLGACDYSYGRWVREENYPIQLYDENCPFLDPGF RCRQNGRADVEYLKWRWQPDGCDLPRFNASEFLERSRNGRVVFAGDSIGRNQWESLIC MLAQAVTNRSTIFEENGNPITKHKGYLSIKFQDYNLTVEYYRTPFLVIINRPPKDSPA HVRATIRVDELHWYSRRWTGANVLVLNTGHWWNKEKTVKMGCYFQQGGKVNMTMDVME GLRRSLQTIKSWATQNLNPERSHVFLRSYSPVHYRNGSWNEGGLCDAEIEPEKTYTML KAEPWNNKYISDVIKQMKYGNWKVQLLNITYLTEFRKDGHPSRHREPGTPANAPQDCS HWCLPGIPDTWNELLYAHLVSMGFRTK" mobile_element complement(6892759..6892822) /note="source:CACAO_M_E5899_F5_scaffold_2 20723 20785" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6895640..6897017 /note="source:CACAO_M_E69760_F9_scaffold_9 11945 13319" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6901109..6901228 /note="source:scaffold_3_CACTA_0382 10490 10626" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6901201..6901302 /note="source:scaffold_3_CACTA_0382 10510 10623" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6902292..6902470 /note="source:scaffold_3_CACTA_0382 11045 11200" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6904937..6906411 /note="source:scaffold_3_CACTA_0382 296 1757" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6907117..6908487 /note="source:INTACT19F_F94_scaffold_1-int 10699 12147" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6908576..6910171) /note="source:CACAO_M_E44899_F328_scaffold_6 4434 6036" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6910025..6910555) /note="source:INTACT551_F248_scaffold_7-int 11057 11587" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6910486..6911669 /note="source:CACAO_M_E45167_F85_scaffold_6 5839 7023" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6912111..6913410) /note="source:CACAO_M_E49857_F85_scaffold_7 4046 5353" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6917026..6917087) /note="source:scaffold_3_CACTA_0382 1860 1919" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6917202..6917305 /note="source:scaffold_3_CACTA_0382 10507 10622" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6918271..6918367) /note="source:scaffold_3_CACTA_0382 12156 12248" /mobile_element_type="transposon:TIR/CACTA" mobile_element 6918511..6921223 /note="source:CACAO_M_E34607_F73_scaffold_5 1 2713" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6921104..6921239) /note="source:CACAO_M_E49195_F17_scaffold_6 5495 5635" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6931720..6934676 /note="source:CACAO_M_E34608_F33_scaffold_5 1 2957" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6936353..6938298 /note="source:INTACT453_F4_scaffold_9-int 16621 18559" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 6942184..6943357 /note="source:CACAO_M_E9511_F359_scaffold_2 1 1174" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6943347..6945158 /note="source:CACAO_M_E10050_F359_scaffold_2 1144 2954" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6945083..6945178) /note="source:scaffold_3_CACTA_0382 6327 6424" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(6948035..6951291) /note="source:CACAO_M_E58893_F82_scaffold_9 1 3289" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6951633..6951852 /note="source:INTACT19F_F94_scaffold_1-int 1 210" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6953468..6953734 /note="source:CACAO_M_E42520_F85_scaffold_5 69 339" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6956088..6959008 /note="source:INTACT768_F7_scaffold_8-int 6896 9345" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6960325..6960488) /note="source:CACAO_M_E49568_F36_scaffold_7 3657 3820" /mobile_element_type="retrotransposon:LTR/Copia" gene 6960486..6964241 /locus_tag="TCM_022724" /note="dbxref CacaoGD:Thecc1EG022724" mRNA join(6960486..6960713,6960886..6961153,6961262..6961400, 6961520..6961631,6961761..6961931,6962547..6962625, 6963423..6963533,6963681..6964241) /locus_tag="TCM_022724" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" mobile_element complement(6960489..6960511) /note="source:CACAO_M_E83986_F7_scaffold_10 1031 1217" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(6960501..6960713,6960886..6961153,6961262..6961400, 6961520..6961631,6961761..6961931,6962547..6962625, 6963423..6963533,6963681..6964057) /locus_tag="TCM_022724" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08364.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B5G7" /translation="MEELLIQYMVETNALIQSQVASLKNLETQVGQLANAVSNKPQGT LLSNTKPNSKREGKEPYMELILHSGKEIFLDEFKKLHINISFAKVLEQMPSYVKFVKD ILTKKRRLGEYETVALAEECSDIIQNKLQSKLKDPSSFIIPYTIVALSFAKTLSDLGA SIVEDVLVKVDKFIFPVDFIAFDIEEYREVPILLGNPFYELLELLLIVTHEVFDENYP HDLLEASSHVLKTPFESLDFSTSFSSENKFLGVLRKHKKARGWTIANIRGINPSICMH KIFLEDDNKATIKHPRRLNPIMKEVVSSKGLEIDKAKIETIEKLSSPTLVKERASQRR KFESILKHYHSSNYKGHFGGDRTIAKVLQSDFMGPFISSFNNYYILLAMDYESKWVEA VTMPTNDAKVMLRFLSKNIFTRFGTPWAILSDEGSHFCNKYFVAFFAKYGVTHKVVTA YHPETNGKVKVSNQEIKKILEKVMSLSRKDWAKRLDAAL" gene 6968667..6980574 /locus_tag="TCM_022726" /note="dbxref CacaoGD:Thecc1EG022726" mRNA join(6968667..6968728,6968956..6969097,6972068..6972158, 6972247..6972614,6980496..6980574) /locus_tag="TCM_022726" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS join(6968708..6968728,6968956..6969097,6972068..6972158, 6972247..6972373) /locus_tag="TCM_022726" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08365.1" /translation="MSFRWSKAKVLLSSLPTSLITTWDNFARKFLAKFFLLAKTAKMR NDITSFTQFDVIATQRFASYFAMVDVARLIKTRRMDAMMERVVKESLWRPGHHKVVIH LVHLLSESNLVHHLVWASTEGCSV" mobile_element complement(6971018..6971214) /note="source:INTACT714_F310_scaffold_9-int 10792 11006" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6973813..6974325) /note="source:CACAO_M_E36185_F9_scaffold_5 942 1450" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6974326..6977092 /note="source:CACAO_M_E34611_F87_scaffold_5 1 2767" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(6977093..6978554) /note="source:CACAO_M_E4676_F9_scaffold_2 11124 12593" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 6981833..6983363 /note="source:CACAO_M_E34612_F17_scaffold_5 1 1531" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 6985342..6988288 /locus_tag="TCM_022727" /note="dbxref CacaoGD:Thecc1EG022727" mRNA join(6985342..6985641,6986493..6986655,6988013..6988288) /locus_tag="TCM_022727" /product="Embryo defective 2735" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033901001" /inference="similar to AA sequence:Phytozome:GSVIVT01033901001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g09079t00001" CDS join(6985504..6985641,6986493..6986655,6988013..6988206) /locus_tag="TCM_022727" /codon_start=1 /product="Embryo defective 2735" /protein_id="EOY08366.1" /db_xref="Phytozome:GSVIVT01033901001" /db_xref="TAIR:AT5G06240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIQ8" /translation="MKVKVVCGKVYEYIRYDLKEIAFPSSLPDPPHIKKRRKLTWHER FLVLKEASRLYAASWVRDIGPDLRPNDYKKDEGNEGKPSGDKRRTKEAEPSTLEDIAV AARGGMETLRPALQKLYMTRASSYRDALKSFIDGYQEGIQQVMAKKEVSEAQQEGNTQ KTST" gene 6989177..6991921 /locus_tag="TCM_022728" /note="dbxref CacaoGD:Thecc1EG022728" mRNA join(6989177..6989325,6989886..6989963,6990604..6990732, 6990889..6991921) /locus_tag="TCM_022728" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.65 coverage" CDS join(6989228..6989325,6989886..6989963,6990604..6990732, 6990889..6990928) /locus_tag="TCM_022728" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08367.1" /translation="MEHYCEIPVVLNTLCKKSVTLSSDADGGAIAHRTNPLYRRSPFN PLIGHHPEANDNNICWRIQPKHRWHLNLKMTSDYKLRCCQFEALLQFMVAQGVVLENC YETLANCGFVFS" gene complement(6992287..6995376) /locus_tag="TCM_022729" /note="dbxref CacaoGD:Thecc1EG022729" mRNA complement(join(6992287..6992715,6993732..6993898, 6994522..6995376)) /locus_tag="TCM_022729" /product="AP2/B3-like transcriptional factor family protein, putative" /inference="alignment:exonerate- protein:2:ricco:30032.m000462" /inference="similar to AA sequence:Phytozome:POPTR_0006s22460.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06949t00001" CDS complement(join(6992665..6992715,6993732..6993898, 6994522..6995305)) /locus_tag="TCM_022729" /codon_start=1 /product="AP2/B3-like transcriptional factor family protein, putative" /protein_id="EOY08368.1" /db_xref="Phytozome:POPTR_0006s22460.1" /db_xref="TAIR:AT2G36080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SX03" /translation="MEPTQNSPSSKLHQPSIPLENSPWTSHFYPHQSWINSYNNPQDH PLHPSMFFPSNHPSRNFNLNQDEDEELDDQTSIDNTENPNQNPHENPLDHEREPMFEK PLTPSDVGKLNRLVIPKQHAEKYFPLGGDSGDKGLLLSFEDESGKCWRFRYSYWNSSQ SYVLTKGWSRYVKEKQLDAGDIILFERHRTDGDRLFIGWRRRGAAVAVAAAADGGNAA MGNSGVGGGNEGWGRGLHQGHPYLGHIQGHGANVPYQPDCLHAGSIAQNQAPAGNPKR LLRLFGVNLECQLDESEPSTPDSSSVSSQGPTHQSYNSNYMDITFSRDINHMRNHRG" mobile_element complement(6997255..6997296) /note="source:scaffold_4_CACTA_0497 1216 1257" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7001475..7002791 /note="source:CACAO_PIF_E465_scaffold_115 1776 3160" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 7002848..7003273 /note="source:CACAO_PIF_E465_scaffold_115 3153 3577" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 7006015..7008219 /note="source:CACAO_PIF_E465_scaffold_115 3573 5737" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 7010407..7012498 /note="source:CACAO_M_S_E50888_F253_scaffold_4 3445 5533" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(7013474..7022869) /locus_tag="TCM_022732" /note="dbxref CacaoGD:Thecc1EG022732" mRNA complement(join(7013474..7014216,7014333..7014382, 7014473..7014552,7014756..7014911,7017083..7017238, 7017950..7018073,7018168..7018280,7020583..7020716, 7020853..7021042,7021144..7021556,7022845..7022869)) /locus_tag="TCM_022732" /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033904001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037095t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033904001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc5992t7" CDS complement(join(7014083..7014216,7014333..7014382, 7014473..7014552,7014756..7014911,7017083..7017238, 7017950..7018073,7018168..7018280,7020583..7020716, 7020853..7021042,7021144..7021533)) /locus_tag="TCM_022732" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG037095t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /protein_id="EOY08369.1" /db_xref="Phytozome:GSVIVT01033904001" /db_xref="TAIR:AT2G24280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2DAM1" /translation="MRIIAVGILFLCFSIFSSLSSTVSNDKVPPRFPSSVIRPEQLSL ATKRGTKLYKARYFTQILDHFNFNPKSYQTFQHRYLINDTYWSGPEKNSPIFVYTGNE GDIEWFAQNTGFMFDVAPYFKALLVFIEHRFYGKSIPFGGDKDIAYSNASTLGYLTST QALADYATLIIDLKKNLTADDSPVVVFGGSYGGMLATWFRLKYPHIVIGALASSAPIL NFENITSPYSFNNIITQDFRSESENCYKVIKGSWEQIEDTGSRSGGLELLRKSFRICK NYIDADALESWLTTAFVYTAMTDYPTPSNFLNPLPAYPVKQMCKSIDDPTTGNDSFAK LYGAANVYYNHTGTTTCFNLAYSPDPHGLDMWSWQACTEMIMPTDGNNQDSIFPESQW SYSQRAAVCKGYYGVDPRPNWITTEFGGHDISRALKRFGSNIIFYNGLRDPWSGGGVL KNISKTIVAIVAEQGAHHVDLRFATSQDPKWLQQVREREVKIISNWISQYYHDLANHS " mRNA complement(join(7014678..7014789,7017117..7017238, 7017950..7018073,7018168..7018280,7020583..7020716, 7020853..7021042,7021144..7021675)) /locus_tag="TCM_022732" /product="Alpha/beta-Hydrolases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033904001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037095t2" /inference="similar to AA sequence:Phytozome:GSVIVT01033904001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc5992t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc5992t7" CDS complement(join(7014699..7014789,7017117..7017238, 7017950..7018073,7018168..7018280,7020583..7020716, 7020853..7021042,7021144..7021533)) /locus_tag="TCM_022732" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG037095t2" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 2" /protein_id="EOY08370.1" /db_xref="Phytozome:GSVIVT01033904001" /db_xref="TAIR:AT2G24280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2DAM1" /translation="MRIIAVGILFLCFSIFSSLSSTVSNDKVPPRFPSSVIRPEQLSL ATKRGTKLYKARYFTQILDHFNFNPKSYQTFQHRYLINDTYWSGPEKNSPIFVYTGNE GDIEWFAQNTGFMFDVAPYFKALLVFIEHRFYGKSIPFGGDKDIAYSNASTLGYLTST QALADYATLIIDLKKNLTADDSPVVVFGGSYGGMLATWFRLKYPHIVIGALASSAPIL NFENITSPYSFNNIITQDFRSESENCYKVIKGSWEQIEDTGSRSGGLELLRKSFRICK NYIDADALESWLTTAFVYTAMTDYPTPSNFLNPLPAYPVKQMCKSIDDPTTGNDSFAK LYGAANVYYNHTGTTTCFNLAYSPPNWITTEFGGHVSIIIYISQSQTSIPLRY" mobile_element 7015421..7015504 /note="source:CACAO_M_E5899_F5_scaffold_2 20724 20811" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7019050..7019091) /note="source:CACAO_Mutator_E1149_scaffold_5 4713 4754" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(7024435..7028045) /note="source:CACAO_M_E34404_F23_scaffold_5 3176 6814" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7028058..7028247) /note="source:CACAO_M_E34404_F23_scaffold_5 272 461" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7028244..7029011 /note="source:CACAO_M_E85026_F215_scaffold_10 4186 4952" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7029011..7029070 /note="source:CACAO_M_S_E173_F215_scaffold_1 653 704" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7029064..7031813 /note="source:CACAO_M_E85026_F215_scaffold_10 1230 3993" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7031814..7034765 /note="source:CACAO_M_E35263_F15_scaffold_5 1 2954" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7034766..7036500 /note="source:CACAO_M_S_E173_F215_scaffold_1 3978 5679" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7036501..7036775) /note="source:CACAO_M_E34404_F23_scaffold_5 6487 6760" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7038160..7038302) /note="source:CACAO_M_S_E119191_F3_scaffold_9 593 695" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7039496..7044467 /locus_tag="TCM_022736" /note="dbxref CacaoGD:Thecc1EG022736" mRNA join(7039496..7039782,7039816..7039866,7040141..7040715, 7042014..7042136,7042523..7044432) /locus_tag="TCM_022736" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30032.m000458" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041341t1" /inference="similar to AA sequence:ricco:30032.m000458" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc534t5; alternateUTRof:Thecc1EG022736t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3440t2" mRNA join(7039518..7039745,7040141..7040715,7042014..7042136, 7042523..7044467) /locus_tag="TCM_022736" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30032.m000458" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041341t1" /inference="similar to AA sequence:ricco:30032.m000458" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3440t2" mRNA join(7039518..7039591,7040141..7040715,7042014..7042136, 7042523..7044467) /locus_tag="TCM_022736" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30032.m000458" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041341t1" /inference="similar to AA sequence:ricco:30032.m000458" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b022006t1a2; alternateUTRof:Thecc1EG022736t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3440t2" mRNA join(7039658..7039745,7040141..7040715,7042014..7042136, 7042523..7044460) /locus_tag="TCM_022736" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30032.m000458" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041341t1" /inference="similar to AA sequence:ricco:30032.m000458" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc536t2; alternateUTRof:Thecc1EG022736t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3440t2" CDS join(7040224..7040715,7042014..7042136,7042523..7043926) /locus_tag="TCM_022736" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30032.m000458; paralog of Thecc1EG041341t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY08371.1" /db_xref="TAIR:AT3G11590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HBW4" /translation="MMMPMQNLDNIDMESFLPGKIRKRGCSSSASSSSSVIQNYRFKR AILVGSKRGGSSTPVPTWKLMMRSPSTASMLRATESPKYAGSQSGSKVKGQGQGQQQP ISARKLAATLWEMNEIPSPRRKEGNDERRRRKEGRERGVARSVHSGSLPPHLSDPSHS PVSERMDRSGTGSRQRRASSVSHKLRLTDHNVGVLDSISNASLMEIETKSHAQTPTGS TVGFKTRLKDVSNALTTSKELLKIINRMWGHEDRPSSSMSLISALHAELERARLQVNQ LIQEQRSDQHDINYLMKCFAEEKAAWKSKEQKAVKAAIESIAGELEVERKLRKRFEGL NKKLGKELAETKTSLLKSVKELESEKRTRVVIEQVCDELARDISEDKAEKEELKRESA KVREEVEKEREMMQLADVLREQRVQMKLSEAKYHLEEKNAAVDKLRSQLETFLGTKRV KEKGRVSLNEQNTNSEEIAAYLNRAHFGPHPSEENEEHGEVEDVVECEEDSGESDLHS IELNMDNNNKNYKWAYAPGGTRDSRDPLINEEDITGRKSTSSRLPRKSTSLQRSISDG VDWGIQNERLQNSGDDLEWGRFAELEKQVETKGYGDEMHGYKAVKGLREHLLSGSRTG RVYASPTRASRDVGNVAQDRPPLVPGSVLKSRLAESRGEAHNARKSRW" CDS join(7040224..7040715,7042014..7042136,7042523..7043926) /locus_tag="TCM_022736" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30032.m000458; paralog of Thecc1EG041341t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY08372.1" /db_xref="TAIR:AT3G11590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HBW4" /translation="MMMPMQNLDNIDMESFLPGKIRKRGCSSSASSSSSVIQNYRFKR AILVGSKRGGSSTPVPTWKLMMRSPSTASMLRATESPKYAGSQSGSKVKGQGQGQQQP ISARKLAATLWEMNEIPSPRRKEGNDERRRRKEGRERGVARSVHSGSLPPHLSDPSHS PVSERMDRSGTGSRQRRASSVSHKLRLTDHNVGVLDSISNASLMEIETKSHAQTPTGS TVGFKTRLKDVSNALTTSKELLKIINRMWGHEDRPSSSMSLISALHAELERARLQVNQ LIQEQRSDQHDINYLMKCFAEEKAAWKSKEQKAVKAAIESIAGELEVERKLRKRFEGL NKKLGKELAETKTSLLKSVKELESEKRTRVVIEQVCDELARDISEDKAEKEELKRESA KVREEVEKEREMMQLADVLREQRVQMKLSEAKYHLEEKNAAVDKLRSQLETFLGTKRV KEKGRVSLNEQNTNSEEIAAYLNRAHFGPHPSEENEEHGEVEDVVECEEDSGESDLHS IELNMDNNNKNYKWAYAPGGTRDSRDPLINEEDITGRKSTSSRLPRKSTSLQRSISDG VDWGIQNERLQNSGDDLEWGRFAELEKQVETKGYGDEMHGYKAVKGLREHLLSGSRTG RVYASPTRASRDVGNVAQDRPPLVPGSVLKSRLAESRGEAHNARKSRW" CDS join(7040224..7040715,7042014..7042136,7042523..7043926) /locus_tag="TCM_022736" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30032.m000458; paralog of Thecc1EG041341t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY08373.1" /db_xref="TAIR:AT3G11590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HBW4" /translation="MMMPMQNLDNIDMESFLPGKIRKRGCSSSASSSSSVIQNYRFKR AILVGSKRGGSSTPVPTWKLMMRSPSTASMLRATESPKYAGSQSGSKVKGQGQGQQQP ISARKLAATLWEMNEIPSPRRKEGNDERRRRKEGRERGVARSVHSGSLPPHLSDPSHS PVSERMDRSGTGSRQRRASSVSHKLRLTDHNVGVLDSISNASLMEIETKSHAQTPTGS TVGFKTRLKDVSNALTTSKELLKIINRMWGHEDRPSSSMSLISALHAELERARLQVNQ LIQEQRSDQHDINYLMKCFAEEKAAWKSKEQKAVKAAIESIAGELEVERKLRKRFEGL NKKLGKELAETKTSLLKSVKELESEKRTRVVIEQVCDELARDISEDKAEKEELKRESA KVREEVEKEREMMQLADVLREQRVQMKLSEAKYHLEEKNAAVDKLRSQLETFLGTKRV KEKGRVSLNEQNTNSEEIAAYLNRAHFGPHPSEENEEHGEVEDVVECEEDSGESDLHS IELNMDNNNKNYKWAYAPGGTRDSRDPLINEEDITGRKSTSSRLPRKSTSLQRSISDG VDWGIQNERLQNSGDDLEWGRFAELEKQVETKGYGDEMHGYKAVKGLREHLLSGSRTG RVYASPTRASRDVGNVAQDRPPLVPGSVLKSRLAESRGEAHNARKSRW" CDS join(7040224..7040715,7042014..7042136,7042523..7043926) /locus_tag="TCM_022736" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30032.m000458; paralog of Thecc1EG041341t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY08374.1" /db_xref="TAIR:AT3G11590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HBW4" /translation="MMMPMQNLDNIDMESFLPGKIRKRGCSSSASSSSSVIQNYRFKR AILVGSKRGGSSTPVPTWKLMMRSPSTASMLRATESPKYAGSQSGSKVKGQGQGQQQP ISARKLAATLWEMNEIPSPRRKEGNDERRRRKEGRERGVARSVHSGSLPPHLSDPSHS PVSERMDRSGTGSRQRRASSVSHKLRLTDHNVGVLDSISNASLMEIETKSHAQTPTGS TVGFKTRLKDVSNALTTSKELLKIINRMWGHEDRPSSSMSLISALHAELERARLQVNQ LIQEQRSDQHDINYLMKCFAEEKAAWKSKEQKAVKAAIESIAGELEVERKLRKRFEGL NKKLGKELAETKTSLLKSVKELESEKRTRVVIEQVCDELARDISEDKAEKEELKRESA KVREEVEKEREMMQLADVLREQRVQMKLSEAKYHLEEKNAAVDKLRSQLETFLGTKRV KEKGRVSLNEQNTNSEEIAAYLNRAHFGPHPSEENEEHGEVEDVVECEEDSGESDLHS IELNMDNNNKNYKWAYAPGGTRDSRDPLINEEDITGRKSTSSRLPRKSTSLQRSISDG VDWGIQNERLQNSGDDLEWGRFAELEKQVETKGYGDEMHGYKAVKGLREHLLSGSRTG RVYASPTRASRDVGNVAQDRPPLVPGSVLKSRLAESRGEAHNARKSRW" gene 7045708..7048471 /locus_tag="TCM_022737" /note="dbxref CacaoGD:Thecc1EG022737" mRNA 7045708..7048471 /locus_tag="TCM_022737" /product="Pentatricopeptide repeat superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s22400.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG047020t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s22400.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05114t00001" CDS 7045761..7047557 /locus_tag="TCM_022737" /note="paralog of Thecc1EG047020t1" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein" /protein_id="EOY08375.1" /db_xref="Phytozome:POPTR_0006s22400.1" /db_xref="TAIR:AT5G37570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FHR3" /translation="MIGPDQYGLLKHGLIILTRSDPAHRSIQFREKKGKERKGKAYVK ILFPLMPVPHPHLLNTLPSLPTLLRSCKTQNQLHQIHAHIIKKGLQQDHILITLFLSL STSLSYSTSVFNYLFHPSTCVWNSLLKGYSRNSSFLQTLSLFIRMKRDGGLPDKYTYS LVIKACSSQFKAWEGKMLHGLALKGGGKEDVFVGTSLVDFYGKIMEIFNARKVFDEMS ERNVVSWTALVAGCINVGDFVEAKRVFNLMPERNVATWNALIGGLVKTGDLRNARKVF DEMPERNVVSYTTMIDGYAKAGDMASARFLFEQAPERDIVAWSALISGYEQNGQPNEA VKIFIRLGQINVKPDEFILVSLMSACSQVGSLELAKWVDCYLSRSEIDIRQAHVMTAL IDMNAKCGNMDRAAKLFEEIPKRDVIQYCSVIQGLTIHGQEAQAVELFNRMISEGLIP DEIAFTIILNACSSAGLVEEGWHYFETMKNEYSIVPTPDHYACMVDLLSRKGRLKAAY ELIKSMPVEPHAGAWGALLGACKLHCDVELGELVAARLFDLEPLNAGNYVLLSNIYAA AEQWLNVSLVRNKMKERGVRKIPGCSWIYFNK" mobile_element 7048379..7050313 /note="source:CACAO_M_E34616_F1_scaffold_5 1 1935" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(7048528..7054213) /locus_tag="TCM_022738" /note="dbxref CacaoGD:Thecc1EG022738" mRNA complement(join(7048528..7048618,7051481..7052882, 7053155..7053522,7053680..7054213)) /locus_tag="TCM_022738" /product="DNA/RNA polymerases superfamily protein" /inference="alignment:exonerate- protein:2:frave:gene33532.5" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005025t1" /inference="similar to AA sequence:frave:gene24738" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.43 coverage" gene complement(7048532..7050312) /locus_tag="TCM_022739" /note="dbxref CacaoGD:Thecc1EG022739" mRNA complement(join(7048532..7049514,7049812..7050312)) /locus_tag="TCM_022739" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:frave:gene33532.5" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031718t1" /inference="similar to AA sequence:frave:gene33532" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc4519t1" CDS complement(join(7048790..7049514,7049812..7050226)) /locus_tag="TCM_022739" /note="dbxref frave:gene33532; paralog of Thecc1EG031718t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08377.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BU14" /translation="MLSVMSIQVTGFEELKNQYSSDSYFSKIIADLQGSLQAGNLPYR LHEDYLFKGNQLCIPEGSLREQIIRELHGNGLGGHFGRDKTLAMVADRYYWPKMRRDV ERLVKRCPACLFGKGSAQNTSLYVPLPEPDAPWIHLKVVNRSLGNMLRCLIQNNPKTW DLVIPQAEFAYNNSVNRSIKKTPFEAAYGLKPQHVLDLVPLPQEARVSNEGKLFADHI RKIHEEVKAALKASNAEYSFTANQHRRKQEFEEGDQVFVHLRQKRFPKGTYHKLKFRK FGPCKVLKKISSNAYLIELPPELQISPIFNILDLYPFDGCDGTASTIDAQIQHLPIAK VEVIEDVLDVKEVRSRRGNPYRRLLVKWLGKPANESTWIAEEELK" gene complement(<7048827..7052144) /locus_tag="TCM_022740" /note="dbxref CacaoGD:Thecc1EG022740" mRNA complement(join(<7048827..7048851,7050599..7052101, 7052115..7052144)) /locus_tag="TCM_022740" /product="DNA/RNA polymerases superfamily protein" /inference="alignment:exonerate- protein:2:frave:gene33532.5" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005025t1" /inference="similar to AA sequence:frave:gene24738" /note="quality class is strongpartial-expresste, express is strong, homology is paralog strong, intron is none, protein is partial3; similar to RNA sequence, EST 0.59 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc8Loc574t6_G3" CDS complement(join(<7048829..7048851,7050599..7051406)) /locus_tag="TCM_022740" /note="dbxref frave:gene24738; paralog of Thecc1EG005025t1" /codon_start=1 /product="DNA/RNA polymerases superfamily protein" /protein_id="EOY08378.1" /db_xref="TAIR:ATMG00860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BU14" /translation="MCVDSRAINKITIKYRFPIPRLDEMIDQLVGSRVFSKIDLKSGY HQIRMRDGDEWKTVFKTPDGLFEWLVMPFGLSNAPSTFMKVMAEVLKPFLKSFMVVYF DDILIYIHTKEKHLKHLRQVLEVLQKEQLYINLKKCSFMQPEVVYLGFIVSAEGLKPD PEKIRAISEWPAPTSIKEVRSFHGLASFYRRFIRNFSSIMSPITESLKKDGFEWSHSA QKAFERVKALMTKALVLTLPDFEKLFVVECDASHVGIGAVLSQDGRPIEFFMKWLGKP A" mobile_element 7050414..7053861 /note="source:CACAO_M_E34616_F1_scaffold_5 1936 5383" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(7051521..7052882,7053155..7053469)) /locus_tag="TCM_022738" /note="dbxref frave:gene24738; paralog of Thecc1EG005025t1" /codon_start=1 /product="DNA/RNA polymerases superfamily protein" /protein_id="EOY08376.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BU14" /translation="MVGQARGRGRGNQPQQAELAEMRRMIDDLTRAVQALQRQEPVEA RMENPEGDHNPLEIHNLEDDGEFENENPFHEDGPANQAARVGLEGRLLHALDLNGGGI RIEFHCLKQNNMTVEEYTSDFNNLSIRVGLAESNEQITSRYLAGLNHSIRDEMGVVRL YNIEDARQYALSTEKRVLRYGARKPLYGTHWQNNSKARRGYPTSQQNYQGAATINKTN RGATNVEKNDKGKGIMPYGGQNNSGSSTNKGGSNSHIRCFTCGEKGHTSFACPQRRVN LAELGEELEPVYDEYEEEVEEIDVYPAQGESLVVRRVMTTTVNEEAEDWKRRSIFRTR VVCEGKVCDLVIDGGSMENIISKEAVNKLKLPTNKHPYPYKIGWLKKGHEVPVTTQCL VKFTMGDNLDDEALCDVVPMDVGHILVGRPWLYDHDMVHKTKPNTYSFYKDNKRYTLY PLKEETKKSANSKISKITGYLSAENFEAEGSEMGIMYALVTKHLKSDQMGKSPQYPTE IQQLLKEFGELFNKDLPKSLPPLRSIQHAIDLVPGAALPNLPAYRMPPMQ" mobile_element 7058110..7060925 /note="source:scaffold_1_CACTA_0009 9642 12459" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7060923..7061352 /note="source:CACAO_Mutator_E1998_scaffold_9 9453 10105" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(7061316..7061358) /note="source:CACAO_M_E33977_F20_scaffold_4 5604 5647" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7062763..7065615 /locus_tag="TCM_022742" /note="dbxref CacaoGD:Thecc1EG022742" mRNA join(7062763..7063417,7063615..7063740,7063835..7064149, 7064591..7064719,7064821..7065429) /locus_tag="TCM_022742" /product="Peptidase M20/M25/M40 family protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT3G02875.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022797t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s22390.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaL_g10424t00001" mRNA join(7063037..7063100,7063163..7063417,7063615..7063740, 7063835..7064149,7064591..7064719,7064821..7064918, 7065112..7065615) /locus_tag="TCM_022742" /product="Peptidase M20/M25/M40 family protein isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT3G02875.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022797t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s22390.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc112t10_C2; inference alignment:Newbler:10:TSA:cgbaL_g10424t00001" CDS join(7063064..7063417,7063615..7063740,7063835..7064149, 7064591..7064719,7064821..7065195) /locus_tag="TCM_022742" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG022797t1" /codon_start=1 /product="Peptidase M20/M25/M40 family protein isoform 1" /protein_id="EOY08379.1" /db_xref="Phytozome:POPTR_0006s22390.1" /db_xref="TAIR:AT3G02875.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P54968" /translation="MIPMEFFSCFVVSTIIFQAMALETRPGSELELLSQELLESARQP EFFEWMRGIRRRIHEHPELGFEEHKTNELIRNELDSLGISYKWPVAKTGVVGSIGSGA NPVFGLRADMDALPLQELVEWKHKSKVDGKMHACGHDSHVAMLLGAAKLLQSRRDLLK GTVKLVFQPGEEGYSGAYYMLQDEVLDDIDAILSIHVLPSVPTGAIASRPGPMLAGVG LFSATIQGKGAHASSPHLSKDPIVAACSAVIALQQIVSRETDPLKAMVVTVGSIEGGR AENVIPESVRFTGTYRSLSTEGLSYLQKRIKEVIEMQAAVHQCSGTVDFMEDKPMPHP VMVNDETLFEHANKVGKSLVGENNVHLLPISMAAEDFSLFAQRTAAAIYVIGIKNETL KSDQPLHSPYFFIDEEALPIGAAFNAAVAISYLDSHVATN" CDS join(7063211..7063417,7063615..7063740,7063835..7064149, 7064591..7064719,7064821..7064918,7065112..7065250) /locus_tag="TCM_022742" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG022797t1" /codon_start=1 /product="Peptidase M20/M25/M40 family protein isoform 2" /protein_id="EOY08380.1" /db_xref="Phytozome:POPTR_0006s22390.1" /db_xref="TAIR:AT3G02875.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P54968" /translation="MRGIRRRIHEHPELGFEEHKTNELIRNELDSLGISYKWPVAKTG VVGSIGSGANPVFGLRADMDALPLQELVEWKHKSKVDGKMHACGHDSHVAMLLGAAKL LQSRRDLLKGTVKLVFQPGEEGYSGAYYMLQDEVLDDIDAILSIHVLPSVPTGAIASR PGPMLAGVGLFSATIQGKGAHASSPHLSKDPIVAACSAVIALQQIVSRETDPLKAMVV TVGSIEGGRAENVIPESVRFTGTYRSLSTEGLSYLQKRIKEVIEMQAAVHQCSGTVDF MEDKPMPHPVMVNDETMKRLFLLERLSMLPLQFHTWIAMLQLIESFDINVNIAKHNKK RYG" gene 7065525..7068228 /locus_tag="TCM_022743" /note="dbxref CacaoGD:Thecc1EG022743" mRNA join(7065525..7066184,7068134..7068228) /locus_tag="TCM_022743" /product="Bric-a-brac 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s22410.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3496t1" CDS 7065818..7066006 /locus_tag="TCM_022743" /codon_start=1 /product="Bric-a-brac 1" /protein_id="EOY08381.1" /translation="MVLWSYPPTVKQLAVTIGFCLTGTSLMAVGAYLSLVNIAPQQER AQARSQYVKDRLRKMLDD" mobile_element complement(7068389..7068617) /note="source:INTACT189_F49_scaffold_5-int 17703 17918" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7069927..7070317) /note="source:INTACT189_F49_scaffold_5-int 15657 16047" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7070318..7087129 /note="source:INTACT639F_F363_scaffold_5-int 1 16812" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7087130..7087249) /note="source:INTACT189_F49_scaffold_5-int 15542 15661" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7087284..7087342) /note="source:INTACT189_F49_scaffold_5-int 15377 15437" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7087334..7087553) /note="source:INTACT189_F49_scaffold_5-int 14898 15120" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7087552..7087726) /note="source:INTACT189_F49_scaffold_5-int 14315 14479" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7088961..7092823) /note="source:INTACT522_F240_scaffold_3-int 1 3865" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7096044..7100491 /note="source:CACAO_M_E9944_F272_scaffold_2 4962 9357" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7099190..7100811) /note="source:CACAO_M_E3746_F14_scaffold_1 1 1616" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7103928..7106825 /note="source:CACAO_M_E34622_F15_scaffold_5 1 2875" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7106777..7106836) /note="source:CACAO_M_E59641_F12_scaffold_9 1718 1775" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7111268..7114428 /note="source:CACAO_M_E65323_F12_scaffold_9 4687 9926" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7121584..7123062 /locus_tag="TCM_022748" /note="dbxref CacaoGD:Thecc1EG022748" mRNA join(7121584..7121724,7122084..7123062) /locus_tag="TCM_022748" /product="Short chain alcohol dehydrogenase" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g11980.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022754t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s22330.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03004t00002" CDS join(7121699..7121724,7122084..7122888) /locus_tag="TCM_022748" /note="paralog of Thecc1EG022754t1" /codon_start=1 /product="Short chain alcohol dehydrogenase" /protein_id="EOY08382.1" /db_xref="Phytozome:POPTR_0006s22330.1" /db_xref="TAIR:AT2G47140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SW08" /translation="MSIAIPQKSKHQPSNIRLEDKVAIITGGASGIGASTVHIFHENG AKVVIADIKDSLGQAIADKLGENVYYIHCDVSNEDDICNLIDTTVSKYGRLDIMYNNA GIMDHAVGGIVDAKKSDLERLFGVNLVGAFLGAKHAARVMIPQRRGCILFTTSVCTAI AGLSTHSYAASKYAILGLAKNLTPDLGQYGVRVNCISPYGVVTSVPGIAEDQRSKVEQ RLSDVGNLKGEILKPECVARAALYLGSDEANYVSGLNLLVDGGFSVVNPTMLKFANLV " mobile_element 7125693..7128409 /note="source:CACAO_M_E34630_F98_scaffold_5 1 2717" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7130589..7137967 /note="source:INTACT512_F236_scaffold_5-int 1 7379" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7152184..7154726 /note="source:CACAO_M_E59641_F12_scaffold_9 10420 13003" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7154724..7154838 /note="source:CACAO_M_E58601_F7_scaffold_9 4181 4296" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7159812..7162173 /note="source:CACAO_M_S_E53154_F78_scaffold_5 1 2366" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7162174..7171657 /note="source:CACAO_M_E34642_F7_scaffold_5 1 9484" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7171658..7172135 /note="source:CACAO_M_S_E83537_F78_scaffold_6 2372 2851" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7172505..7173666) /note="source:CACAO_M_S_E4591_F5_scaffold_1 18597 19861" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7176744..7177892 /note="source:CACAO_M_S_E4591_F5_scaffold_1 44 1198" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7177838..7177905) /note="source:INTACT405F_F91_scaffold_4-int 18421 18490" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7177891..7181803) /note="source:CACAO_M_S_E33139_F368_scaffold_4 1693 5602" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7181804..7184596 /note="source:CACAO_M_E34644_F333_scaffold_5 1 2782" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7184597..7186098 /note="source:CACAO_M_E14113_F106_scaffold_3 18952 20431" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7191263..7210737 /note="source:CACAO_M_S_E52339_F15_scaffold_5 1 19475" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7212093..7213662 /locus_tag="TCM_022754" /note="dbxref CacaoGD:Thecc1EG022754" mRNA join(7212093..7212218,7212601..7213662) /locus_tag="TCM_022754" /product="Short chain alcohol dehydrogenase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s22330.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022748t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s22330.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.43 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc7492t1" CDS join(7212175..7212218,7212601..7213384) /locus_tag="TCM_022754" /note="paralog of Thecc1EG022748t1" /codon_start=1 /product="Short chain alcohol dehydrogenase" /protein_id="EOY08383.1" /db_xref="Phytozome:POPTR_0006s22330.1" /db_xref="TAIR:AT2G47140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SW08" /translation="MTSPGISALASPGGRLQGKVAVITGGASGIGASTARLFHENGAK VVIADIQDSLGQALADELGENASYIHCDVSNEDDISNLVDTAIVKHGKLDIMYNNAGV LDRPFSSILETTKWDLDLVVGVNLAGAFLGAKHAARVMIPQRKGCILFTASATTAIAG MASYAYTASKYGIVGLAKNLAAELGQYGIRVNCVSPFIVATPMSAPTEGDIPKVEAIS SATGNLKGELLKAEGVAQAVLFLASDDANYASGLNVVLDGGFSIVNPTMMKAFKLVP" gene complement(7213669..7225904) /locus_tag="TCM_022755" /note="dbxref CacaoGD:Thecc1EG022755" mRNA complement(join(7213669..7214646,7221088..7221379, 7225753..7225904)) /locus_tag="TCM_022755" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017273t1" /note="quality class is weak-utrpoor, express is none, homology is paralog medium, intron is none, protein is utrpoor_complete" CDS complement(7214274..7214618) /locus_tag="TCM_022755" /note="paralog of Thecc1EG017273t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08384.1" /translation="MGVYKGLNLAWELGFHKIIIQVDIQLVSRAITSYNFHPSSNSDL ISVIHSLLTRQWEVKICHFYRKGNRLANFMASKGIELEEVCLVFHSPPIGASEILMYD MLGICFPQMIRI" mobile_element complement(7217033..7219588) /note="source:CACAO_M_E52239_F256_scaffold_7 3828 6439" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7220817..7242674 /locus_tag="TCM_022756" /note="dbxref CacaoGD:Thecc1EG022756" mRNA join(7220817..7221028,7232447..7232525,7235627..7236036, 7236271..7236398,7236946..7237092,7237360..7237469, 7237677..7237794,7238873..7239449,7239727..7239864, 7242383..7242674) /locus_tag="TCM_022756" /product="Uncharacterized protein" /inference="similar to AA sequence:Phytozome:Glyma09g10910.1" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" mobile_element 7226048..7228607 /note="source:CACAO_M_S_E85177_F5_scaffold_7 17609 20249" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7228781..7230218) /note="source:CACAO_M_S_E65716_F44_scaffold_5 8138 9077" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7230271..7231433 /note="source:INTACT1332F_F13_scaffold_8-int 5137 6298" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(7232451..7232525,7235627..7236036,7236271..7236398, 7236946..7237092,7237360..7237469,7237677..7237794, 7238873..7239360) /locus_tag="TCM_022756" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08385.1" /db_xref="Phytozome:Glyma09g10910.1" /translation="MENAKQRFEDLIVKKKDKKEVETYKSQYSMLEITISSRIILILT TSILVGGFTLISHRATTRDLYLHENQFLLLDFHHELKFLYLRRNHLWNRCSCNTWQRM MPSFRVKLDHFEILRHESVNLPMPSPINLRELYRVTLKQILKEKEKSIVKQSHSEVEK RYYVKFVKDILIKKRRFGEFTTVALIEKCNVINHNKLPPKLKNLDAPPHVIRSNPQFE SLEIPTFSTHTKLSIEEPPILECKPLLIHLRYAFLDSSWVSSIQCVQKKGRMTIVFNA NNELIPTRIVTRWRIMPFRLCNALITFKIYMMAISFDMVEKCLEVFMDDFSVFELLLV MKVITFVTSTLKYFLQNMESPIRLHLPITHRLIVKLKYPTEKSREFWRRLCVHEENTS PRGWMIALWAYRTVYKTLIEMSPYKLVFEKACHFPVELKHNAYCVIKKLKFDLHVTGE KCLLQFIELDEFHFQAYENAKLYKERTKRWHEKKIIEHHFE" mobile_element 7239516..7240654 /note="source:INTACT591_F264_scaffold_1-int 1 1187" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7240658..7241538) /note="source:INTACT85_F9_scaffold_4-int 566 1452" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7241742..7254724 /note="source:INTACT84_F12_scaffold_5-int 1 12983" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7242831..7244806 /locus_tag="TCM_022758" /note="dbxref CacaoGD:Thecc1EG022758" mRNA join(7242831..7243754,7244665..7244806) /locus_tag="TCM_022758" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035937t1" /inference="similar to AA sequence:Phytozome:Glyma11g25770.1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.33 coverage" CDS 7242887..7243720 /locus_tag="TCM_022758" /note="paralog of Thecc1EG035937t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08386.1" /db_xref="Phytozome:Glyma11g25770.1" /translation="MIHMALQKSIVAEGQSTNRPPLFDDSNYPYWSTRMSIYIRAINY EMWDVITDGTFMPSTVNVVTNELMPKPRSEWIEAETKKVQINFKAINTLHCTLTPTEF NKISSGTTAKQVWKKLRTIHEETYQVKESKIALLTHNYEMFKMEYGEDITSMFDRFTN ITNKLTQLGKPIPEHELVKRLLRSLPKSWKPKVTAIREAKDLNIITLNGICGSLLTHE IELKEEEEEEDQREAKEKKKSIALKASILEEELEELFYDDDEELALIARKFRKLMGKR N" mobile_element 7254725..7256403 /note="source:CACAO_M_S_E89272_F5_scaffold_8 7823 9555" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7256404..7259337 /note="source:CACAO_M_E34676_F281_scaffold_5 1 2934" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7259338..7259626 /note="source:CACAO_M_S_E89272_F5_scaffold_8 9555 9835" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7259926..7260105) /note="source:CACAO_M_E36185_F9_scaffold_5 6915 7025" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7260008..7260091 /note="source:INTACT631_F9_scaffold_10-int 5099 5190" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7260326..7263230 /note="source:CACAO_M_S_E66354_F74_scaffold_5 5412 8306" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7263240..7263254) /note="source:CACAO_M_S_E119160_F14_scaffold_9 10406 10491" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7263255..7263596 /note="source:CACAO_M_E42514_F40_scaffold_5 17377 17718" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7263597..7263644) /note="source:CACAO_M_S_E119160_F14_scaffold_9 10101 10405" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7264025..7264121) /note="source:CACAO_M_S_E5162_F13_scaffold_1 5311 5414" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7264861..7267405) /note="source:CACAO_M_E8481_F245_scaffold_2 6454 9009" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7267337..7267608 /note="source:CACAO_M_E69460_F12_scaffold_9 8397 8689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7267400..7268167) /note="source:CACAO_M_E8481_F245_scaffold_2 5435 6200" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7267946..7268718 /note="source:INTACT563_F255_scaffold_10-int 5158 5929" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7268742..7269690 /note="source:CACAO_M_E52617_F328_scaffold_7 18507 19391" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7269537..7269879 /note="source:CACAO_M_E42514_F40_scaffold_5 17376 17718" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7269880..7269929) /note="source:CACAO_M_S_E119160_F14_scaffold_9 10101 10473" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7270447..7270522 /note="source:CACAO_M_E3626_F245_scaffold_1 2947 3024" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7271119..7272611) /note="source:INTACT415F_F22_scaffold_4-int 1203 2667" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7274482..7276162 /note="source:CACAO_M_E34683_F3_scaffold_5 1 1681" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7280326..7280429 /note="source:CACAO_M_E12463_F12_scaffold_3 4579 4684" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7280510..7283700 /note="source:CACAO_M_E71405_F316_scaffold_10 4796 7993" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7288424..7291409) /note="source:CACAO_M_E12931_F245_scaffold_3 1 2980" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7296221..7296303 /note="source:CACAO_M_E3626_F245_scaffold_1 2944 3025" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7296417..7297817 /note="source:INTACT690_F13_scaffold_1-int 5676 7081" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7297960..7299283 /note="source:CACAO_M_E11054_F12_scaffold_2 11658 13001" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7299354..7301052 /note="source:INTACT242_F12_scaffold_1-int 2872 4558" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7301228..7301279) /note="source:CACAO_M_S_E89272_F5_scaffold_8 9900 9951" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7301438..7301509) /note="source:CACAO_M_S_E89272_F5_scaffold_8 9604 9676" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7301912..7304758 /note="source:CACAO_M_S_E52387_F254_scaffold_5 1 2847" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7311772..7311825) /note="source:CACAO_M_S_E89272_F5_scaffold_8 8191 8244" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7314377..7314426) /note="source:CACAO_M_S_E89272_F5_scaffold_8 8212 8262" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7314427..7315655) /note="source:CACAO_M_E14113_F106_scaffold_3 4364 5601" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7315631..7315703 /note="source:CACAO_M_E5899_F5_scaffold_2 20740 20799" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7315835..7315972) /note="source:CACAO_M_E14113_F106_scaffold_3 4048 4186" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7316723..7316863) /note="source:INTACT424_F211_scaffold_12-int 1222 1379" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7316755..7317883 /note="source:CACAO_M_S_E84376_F22_scaffold_6 4749 5911" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7317984..7318570 /note="source:CACAO_M_E52239_F256_scaffold_7 21850 22438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7318619..7318694 /note="source:INTACT518_F239_scaffold_2-int 6889 6964" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7319249..7322352 /note="source:CACAO_M_E34695_F51_scaffold_5 1 3104" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7325981..7326353) /note="source:CACAO_M_S_E99035_F335_scaffold_9 6899 7273" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7326314..7327027 /note="source:INTACT363_F7_scaffold_9-int 4063 4769" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7328044..7329154) /note="source:CACAO_M_S_E65068_F306_scaffold_5 7146 8301" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7329476..7332486 /note="source:CACAO_M_E34696_F324_scaffold_5 1 3011" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7332543..7332720) /note="source:CACAO_M_E5899_F5_scaffold_2 21014 21189" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7332722..7333867 /note="source:CACAO_M_S_E121068_F335_scaffold_10 1 1145" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7333863..7334846) /note="source:CACAO_M_E36378_F335_scaffold_5 250 1266" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7334847..7337953 /note="source:CACAO_M_E34702_F306_scaffold_5 1 3107" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7337954..7342718) /note="source:CACAO_M_S_E99035_F335_scaffold_9 2806 7387" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7342704..7342743) /note="source:INTACT598_F89_scaffold_2-int 7286 7325" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7342744..7345392 /note="source:CACAO_M_S_E121068_F335_scaffold_10 1 2683" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7345393..7345639) /note="source:CACAO_M_E5899_F5_scaffold_2 20769 21020" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7347237..7347444) /note="source:CACAO_M_E48538_F49_scaffold_6 2548 2738" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7347422..7348077) /note="source:CACAO_M_E48538_F49_scaffold_6 1814 2444" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7348939..7349006) /note="source:CACAO_M_S_E89272_F5_scaffold_8 8195 8263" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7349627..7350595) /note="source:scaffold_8_CACTA_0859 16514 17476" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7351361..7357892) /note="source:INTACT8_F106_scaffold_3-int 2052 8601" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(7354151..7355303) /locus_tag="TCM_022766" /note="dbxref CacaoGD:Thecc1EG022766" mRNA complement(join(7354151..7354398,7354653..7354789, 7354868..7355303)) /locus_tag="TCM_022766" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0174s00220.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009253t1" /inference="similar to AA sequence:Phytozome:POPTR_0002s22330.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.40 coverage" CDS complement(join(7354327..7354398,7354653..7354789, 7354868..7355063)) /locus_tag="TCM_022766" /note="paralog of Thecc1EG009253t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08387.1" /db_xref="Phytozome:POPTR_0002s22330.1" /translation="MDAQSMILHLKELFDKEGLTERYEISKELVRCKMAESSSVRPHM LKMIGLIERLGQLGLAMDHELTTLPELLNMLDMAERSIRKDKGSLLLVSSSKAHTKQQ NKKAQKGKKGPKIKMSKILAEEVTTWMDYLKH" mobile_element 7357893..7359243 /note="source:CACAO_M_E34871_F106_scaffold_5 1 1399" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7359244..7361170) /note="source:CACAO_M_E22637_F42_scaffold_3 1173 3096" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7361153..7361802) /note="source:CACAO_M_S_E13904_F42_scaffold_2 1 629" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7361803..7362429 /note="source:INTACT167_F5_scaffold_2-int 5072 5697" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7366682..7367216) /note="source:CACAO_M_E5899_F5_scaffold_2 22176 22689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7367222..7368127 /note="source:INTACT120_F22_scaffold_3-int 7038 7942" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7370199..7371502) /note="source:CACAO_M_E5899_F5_scaffold_2 20470 21828" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7372408..7373629 /note="source:INTACT561_F253_scaffold_5-int 3 1207" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7373671..7376941) /note="source:CACAO_M_E22786_F85_scaffold_3 1 3305" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7379893..7379977 /note="source:INTACT561_F253_scaffold_5-int 1236 1320" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7381009..7383758 /note="source:INTACT561_F253_scaffold_5-int 1387 4146" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7386156..7388755 /note="source:CACAO_M_E24650_F15_scaffold_4 1 2616" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7388856..7389333) /note="source:CACAO_M_E85187_F15_scaffold_10 1 453" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7389634..7390340 /note="source:INTACT561_F253_scaffold_5-int 4142 4844" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7391104..7391211 /note="source:scaffold_8_CACTA_0859 15826 15932" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7391207..7391394 /note="source:scaffold_8_CACTA_0859 16268 16468" /mobile_element_type="transposon:TIR/CACTA" gene complement(7392336..7396334) /locus_tag="TCM_022767" /note="dbxref CacaoGD:Thecc1EG022767" mRNA complement(join(7392336..7393328,7394403..7394608, 7396326..7396334)) /locus_tag="TCM_022767" /product="NAD(P)-binding Rossmann-fold superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036069001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022805t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s07490.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaL_g05298t00001" CDS complement(join(7392536..7393328,7394403..7394440)) /locus_tag="TCM_022767" /note="paralog of Thecc1EG022805t1" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein" /protein_id="EOY08388.1" /db_xref="Phytozome:POPTR_0016s07490.1" /db_xref="TAIR:AT4G03140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B6TUM2" /translation="MVASSLISAVTRRLEGKVALITGGASGIGKCTAKVFAHHGAKVV IADIQDELGHSVCEAVGPSNCSYVHCNVTDEDQIKNAVDKAVATHGKLDIMFNNAGIT DPIKARIIDNEKSDFERVLSVNVTGVFLGIKHAARVMVPARSGSIISTASVSSTVGAA ATHAYCASKHAVLGLTRNAAVELGQFGIRVNCLSPFALATPLATEVLGINDEELEKGM GLVANLKGVTLKAEDIANAALYLASEEGRYVSGHNLFVDGGFTIFNPSLSMFQYPDNS " gene 7396777..7414561 /locus_tag="TCM_022768" /note="dbxref CacaoGD:Thecc1EG022768" mRNA join(7396777..7397367,7398129..7398569,7398775..7398903, 7399203..7399924,7407070..7407428,7414537..7414561) /locus_tag="TCM_022768" /product="Iaa-amino acid hydrolase 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s07500.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022797t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s07500.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc483t2_C2" CDS join(7397017..7397367,7398129..7398569,7398775..7398903, 7399203..7399583) /locus_tag="TCM_022768" /note="paralog of Thecc1EG022797t1" /codon_start=1 /product="Iaa-amino acid hydrolase 4" /protein_id="EOY08389.1" /db_xref="Phytozome:POPTR_0016s07500.1" /db_xref="TAIR:AT3G02875.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIQ5" /translation="MGWFCLLTIISALACPSTGDKAAHSRLNLSSLTRELLDSAKEPE FFDWLRRVRRRIHEYPELAFEEHETSELIRSELDSLGIQYTSPLAKTGIVASLGSGVK PWFGLRADMDALPIQELIEWEHKSKNNGKMHACGHDVHVTMLLGAAKLLQRKRDELKG TVKLVFQPGEESHAGAYHVIKEGAVDHVEAIFGLHVSPEMPTGTVRSRPGPLLAGSAR FLAKIQGKGGHAARPHTTRDPVLAASLAILALQQIVSQETDPLEARVVSVGFVQANQA ANVIPEIVSFGGTFRSMTTEGLSYLQQRIKQVIETQAVVHQCTATIDFLEEKLRPYPP TVNDESMYEHAKRVGESMLGKSNVLLSPMVMGAEDFSFYSKKMAAAFFMIGTNNETEK PTLRLHSPYLIIDEEVLPIGAAFHAAVAISYLDNHAVHKYQ" gene 7400418..7401407 /locus_tag="TCM_022769" /note="dbxref CacaoGD:Thecc1EG022769" mRNA join(7400418..7400760,7400830..7401407) /locus_tag="TCM_022769" /product="Gag-pol polyprotein-like protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012036t1" /inference="similar to AA sequence:Phytozome:GSVIVT01037631001" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.27 coverage" CDS join(7400475..7400760,7400830..7401296) /locus_tag="TCM_022769" /note="paralog of Thecc1EG012036t1" /codon_start=1 /product="Gag-pol polyprotein-like protein" /protein_id="EOY08390.1" /db_xref="Phytozome:GSVIVT01037631001" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SEL2" /translation="MFGEELKKVQVVEKILNSVPRKFEATIASLLQSKDLPDISITEI VNTLQAAELRISARDETSVEEALLAKNKGNAFVEIFTKKNSREKDRKFSHAENCWFKP DAKCKICNQLGHADKVCKNKPIVREKTPQTTDKVEVAEETLFMASTISQYKIENDKWL LDSRCSNHMTAPKVEFINLDKDYMSRVNIGNGVYLHAMGKVTVKVKSLSRFRYISEVL LVPSITQIFVEHWIDGKELICLAFQRLGMHNV" mobile_element 7401747..7404638 /note="source:CACAO_M_S_E52417_F254_scaffold_5 1 2833" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7405139..7405824 /note="source:CACAO_M_E58324_F9_scaffold_9 7665 8334" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7405848..7409515 /note="source:INTACT120_F22_scaffold_3-int 9684 12732" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7408702..7409926 /locus_tag="TCM_022771" /note="dbxref CacaoGD:Thecc1EG022771" mRNA join(7408702..7409151,7409293..7409926) /locus_tag="TCM_022771" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028000t1" /inference="similar to AA sequence:Phytozome:Glyma11g25770.1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.47 coverage" CDS join(7408946..7409151,7409293..7409518) /locus_tag="TCM_022771" /note="paralog of Thecc1EG028000t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08391.1" /db_xref="Phytozome:Glyma11g25770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BQ25" /translation="MALQKLVVAKGQSTNRPPLFDGFNCPYWSTRMLIYIRAINYEMW DIIIDGPFIPSTLNVVTNEMIPKQRIIHEETCQVKESKIALLTYNYEMFKMEPGEDIT RMLDRFTNITNKLSQLGKPILEYEVVKRLIRSLPKNWKPKV" mobile_element complement(7409516..7410287) /note="source:INTACT120_F22_scaffold_3-int 8780 9544" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7411279..7412223) /note="source:INTACT120_F22_scaffold_3-int 7037 7962" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7412212..7413144 /note="source:CACAO_M_E69283_F22_scaffold_9 1694 2627" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7412260..7413026 /locus_tag="TCM_022772" /note="dbxref CacaoGD:Thecc1EG022772" mRNA 7412260..7413026 /locus_tag="TCM_022772" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028000t1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.35 coverage" CDS 7412452..7412985 /locus_tag="TCM_022772" /note="paralog of Thecc1EG028000t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08392.1" /translation="MGKRNQRLARRGFGKDQGSSWRTKNKNYSNKKEELTCFECKKPG HFKSECPLLKEETPKRNKKSNKAMVATTWSDNDTLSSEAKEEKAEERANLCLMALDDE SVVSSSPCNISINELQDEYECLHDEFEKLVSKYKTLKKKSAFLESYLDKIKLDFDAVF EQRNFLQIKLEHSKIEF" mobile_element 7414599..7418064 /note="source:CACAO_M_E22348_F13_scaffold_3 1 3482" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7416065..7423941) /note="source:INTACT267_F13_scaffold_2-int 953 8836" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7423939..7424119 /note="source:CACAO_M_E59389_F22_scaffold_9 926 1108" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7424113..7428495 /note="source:CACAO_M_E45234_F22_scaffold_6 46 4079" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7428495..7431198) /note="source:CACAO_M_E73087_F12_scaffold_10 7863 10650" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7431199..7436269 /note="source:CACAO_M_E45234_F22_scaffold_6 4075 9127" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7436269..7437711 /note="source:INTACT120_F22_scaffold_3-int 10351 11771" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7437711..7440106 /note="source:INTACT292_F22_scaffold_5-int 7373 9730" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7440107..7440308) /note="source:CACAO_M_E3248_F5_scaffold_1 17358 17566" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7440277..7440397) /note="source:CACAO_M_E3248_F5_scaffold_1 16951 17070" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7440302..7440862 /note="source:scaffold_3_CACTA_0382 11165 11708" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7447806..7448537) /note="source:INTACT293_F14_scaffold_5-int 9222 9966" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7448539..7449636) /note="source:INTACT226_F51_scaffold_1-int 10136 11223" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7449637..7450768) /note="source:CACAO_M_E13466_F15_scaffold_3 1711 2836" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7450769..7453596 /note="source:CACAO_M_E34732_F15_scaffold_5 1 2828" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7453597..7463222 /note="source:CACAO_M_E35955_F15_scaffold_5 1127 10793" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7463223..7465239) /note="source:INTACT226_F51_scaffold_1-int 1 2005" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7465240..7465792 /note="source:INTACT120_F22_scaffold_3-int 9108 9648" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7467553..7472137 /locus_tag="TCM_022781" /note="dbxref CacaoGD:Thecc1EG022781" mRNA join(7467553..7468132,7472112..7472137) /locus_tag="TCM_022781" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS 7467852..7468055 /locus_tag="TCM_022781" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08393.1" /translation="MQSPKVVNNHKIDRKKVSNRRSLVKKSSILTSMGIFDLMELNRV LTPTNSNLGKRINSRISKPYHMM" mobile_element 7468711..7468797 /note="source:CACAO_M_E43672_F60_scaffold_5 18475 18560" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7472108..7472582 /note="source:INTACT120_F22_scaffold_3-int 7039 7503" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7472583..7472979) /note="source:CACAO_M_E5702_F90_scaffold_2 9236 9632" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7473318..7473516 /note="source:INTACT296_F13_scaffold_9-int 12998 13187" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7475301..7476198 /note="source:CACAO_M_S_E31635_F14_scaffold_3 2113 3055" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7476031..7476778) /note="source:CACAO_M_E3248_F5_scaffold_1 2939 3653" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7476944..7477943) /note="source:CACAO_M_E65323_F12_scaffold_9 7737 8730" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7477077..7477945 /note="source:scaffold_1_CACTA_0011 8164 9047" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7477961..7479045 /note="source:CACAO_M_E58601_F7_scaffold_9 9848 10886" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7480385..7480447 /note="source:CACAO_M_E12297_F14_scaffold_3 4893 4955" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(7482519..7491668) /locus_tag="TCM_022783" /note="dbxref CacaoGD:Thecc1EG022783" mRNA complement(join(7482519..7482547,7486184..7486801, 7491663..7491668)) /locus_tag="TCM_022783" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(7486312..7486740) /locus_tag="TCM_022783" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08394.1" /translation="MSIGTSWRLSRAQWEFWVVTIYASIDDLKKVELWDDLGNKMNSF DVCWCLMGGFNVVEEKVGLIDNLRSLDDFVDFINFVQLVDFLMISSHFTWSNGRVFNR LNHFSVSFEFFDHVPNVSQIHLPNSLSDHNPVMICEKNVD" mobile_element 7486681..7489678 /note="source:CACAO_M_S_E85842_F7_scaffold_7 1 2994" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7489606..7489690) /note="source:CACAO_M_E12297_F14_scaffold_3 13995 14079" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7491708..7492439 /note="source:CACAO_M_E33213_F12_scaffold_4 8117 8823" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7492432..7492546 /note="source:INTACT88_F12_scaffold_4-int 12315 12428" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7492540..7494365 /note="source:CACAO_M_S_E119160_F14_scaffold_9 11563 13347" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7495037..7496189 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3314 4456" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7498780..7500224) /note="source:INTACT132_F12_scaffold_9-int 8896 10335" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7500661..7513135 /locus_tag="TCM_022785" /note="dbxref CacaoGD:Thecc1EG022785" mRNA join(7500661..7500682,7507924..7507989,7508829..7509260, 7513101..7513135) /locus_tag="TCM_022785" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s20560.1.7" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045667t1" /inference="similar to AA sequence:Phytozome:Glyma11g25770.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc2352t1_G3" mobile_element 7501173..7501244 /note="source:CACAO_Mariner_E229_scaffold_9 2947 3021" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(7504386..7505079) /note="source:CACAO_M_E12463_F12_scaffold_3 380 1108" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7505080..7508215 /note="source:CACAO_M_E49106_F85_scaffold_6 1 3155" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7507588..7508295 /note="source:INTACT405F_F91_scaffold_4-int 6877 7604" /mobile_element_type="retrotransposon:LTR/Copia" CDS join(7507974..7507989,7508829..7509244) /locus_tag="TCM_022785" /note="paralog of Thecc1EG045667t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08395.1" /db_xref="Phytozome:Glyma11g25770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BQ25" /translation="MLSITSKQVCEKLRIIHEGTSQVKGSKIALLTHSYEMFKMEHGE DITNMFDRFTNITNKLSQLGKPIPEHELVKRLLRSLPKSWKPKVIAIREAKDLNIITL DEICGSLLTHELELKEEEEEDQRESKEKKNSIALKANILEK" mobile_element complement(7508204..7508307) /note="source:CACAO_M_S_E38262_F319_scaffold_4 3008 3113" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7508296..7508433 /note="source:INTACT236_F12_scaffold_10-int 13679 13816" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7508432..7513162 /note="source:INTACT564_F256_scaffold_1-int 993 5729" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7513163..7515777 /note="source:CACAO_M_S_E52472_F231_scaffold_5 1 2615" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7515717..7536802 /locus_tag="TCM_022786" /note="dbxref CacaoGD:Thecc1EG022786" mRNA join(7515717..7515763,7520789..7521126,7525838..7526053, 7527338..7527388,7528192..7528251,7535467..7535524, 7535786..7535843,7535935..7536164,7536267..7536535, 7536669..7536802) /locus_tag="TCM_022786" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30156.m001741.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041182t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete" mobile_element 7515778..7520114 /note="source:CACAO_M_E50198_F12_scaffold_7 5784 10170" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7520039..7520123) /note="source:INTACT263_F12_scaffold_6-int 9471 9555" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7522197..7522474 /note="source:INTACT88_F12_scaffold_4-int 11543 11817" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7522474..7522578) /note="source:INTACT126_F14_scaffold_3-int 5718 5821" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7522604..7523049 /note="source:CACAO_M_E3248_F5_scaffold_1 2767 3214" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7523028..7525958 /note="source:INTACT88_F12_scaffold_4-int 857 3157" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7524190..7525961) /note="source:INTACT126_F14_scaffold_3-int 3152 4985" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(7525895..7526053,7527338..7527388,7528192..7528251, 7535467..7535524,7535786..7535843,7535935..7536164, 7536267..7536505) /locus_tag="TCM_022786" /note="paralog of Thecc1EG041182t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08396.1" /translation="MNVYRDIATVITGSRRVSSRDKWHAEGSNEQPTSRNSYIRLRTN RYVVSCYHKISNSLKCTVQHIETYCSLGDRSFGGMLECIADQATFKIKRQPVTRSRCP HRFVSLVVGYVHWAHTPVMTRKFGRDNHKEAAPFRRKSFPFFNEFSLMYARDHATGKN AQTETDILEEMQECNDTINEETEGENPAGYSFDNEDFSNIQPQTSGETIKEAGIEFSK SVGVEVNIQQKAQELDGILSQLEGLIARKRVLASIKLPESPTLMFVFFSIDPDRRLEW LRTFLADH" mobile_element complement(7528334..7528613) /note="source:INTACT170_F12_scaffold_5-int 5403 5682" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7533188..7535849) /note="source:CACAO_M_E58324_F9_scaffold_9 7663 10227" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7537452..7537697 /note="source:INTACT135F_F90_scaffold_2-int 13756 14006" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7539222..7539358) /note="source:CACAO_M_E48452_F5_scaffold_6 7571 7708" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7539523..7539616) /note="source:CACAO_M_E48452_F5_scaffold_6 13045 13139" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7539842..7541190 /note="source:CACAO_M_E49857_F85_scaffold_7 1 1352" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7541171..7541600) /note="source:CACAO_on_S_E390_scaffold_9 2806 3235" /mobile_element_type="transposon:TIR/Mutator" mobile_element 7542317..7542749 /note="source:scaffold_1_CACTA_0011 5255 5758" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7544676..7545856 /note="source:CACAO_M_E33933_F9_scaffold_4 14420 15600" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7547848..7548051) /note="source:CACAO_M_E58324_F9_scaffold_9 26419 26622" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7548052..7550232 /note="source:CACAO_M_S_E52498_F9_scaffold_5 1 2172" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7550235..7551285) /note="source:CACAO_M_E1841_F5_scaffold_1 27426 28105" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7551267..7551360 /note="source:CACAO_M_E1841_F5_scaffold_1 22958 23053" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7551283..7552089) /note="source:CACAO_M_S_E146091_F272_scaffold_11 5904 6708" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7551798..7552730 /note="source:INTACT85F_F12_scaffold_2-int 9504 10466" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7551908..7553443) /note="source:INTACT236_F12_scaffold_10-int 6621 8174" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7553544..7554402) /note="source:scaffold_6_CACTA_0710 12666 13523" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7554396..7558034 /note="source:CACAO_Mariner_E229_scaffold_9 1616 5250" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(7558034..7560607) /note="source:CACAO_M_S_E4591_F5_scaffold_1 17895 20444" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7560776..7563752) /note="source:scaffold_3_CACTA_0382 382 3342" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7562567..7564626) /note="source:CACAO_M_E33787_F13_scaffold_4 5150 7123" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7564901..7567456) /note="source:CACAO_M_S_E4591_F5_scaffold_1 17895 20443" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7568707..7571805 /note="source:CACAO_M_E57728_F42_scaffold_9 1 3112" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7571736..7571998) /note="source:CACAO_M_E69460_F12_scaffold_9 4809 5037" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7571806..7571970 /note="source:INTACT405F_F91_scaffold_4-int 7303 7483" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7572040..7572125 /note="source:CACAO_M_E3248_F5_scaffold_1 1641 1728" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7572050..7572909) /note="source:INTACT120_F22_scaffold_3-int 8787 9642" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7572902..7572966 /note="source:CACAO_M_S_E4591_F5_scaffold_1 18351 18415" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7572967..7573918) /note="source:CACAO_M_E10266_F33_scaffold_2 2000 2952" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(7573410..7581136) /locus_tag="TCM_022792" /note="dbxref CacaoGD:Thecc1EG022792" mRNA complement(join(7573410..7573589,7574510..7574593, 7576052..7576435,7579888..7581136)) /locus_tag="TCM_022792" /product="Gag protease polyprotein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023385t1" /note="quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.12 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc2Loc1749t3" mobile_element complement(7574021..7575463) /note="source:CACAO_M_E12297_F14_scaffold_3 6890 8331" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(7574544..7574593,7576052..7576435, 7579888..7580962)) /locus_tag="TCM_022792" /note="paralog of Thecc1EG023385t1" /codon_start=1 /product="Gag protease polyprotein" /protein_id="EOY08397.1" /translation="MPTEAAQALAAFFAAMAGQAQTGQVPPVVPPTTPLVPPPIQDVS ISKKLKEARQLGCVSFTGELDATVAKDWINQVSETLSDIGLDDDMKLMVATRLLEMRA RTWWNSVKSRFATPQIWSDFLREFDGQYFTYFHQKEKKKEFLSLKQRNLIVEEYETRF YELMLYVPDLVKSEMDQASYFEEGLRNEIRERMTVTGREPHKEVVQMALQAEKLATEN RRIRTEFAKRKNPGMSSSQPVKRGKESTTSGSTTSVSVTSPRPPFPPSQQRLSRFTRS AMTGSGKSFGGSDRCRNCGNYHSGLCRGPTRCFQCGQTGDIRSNCPQLGRATVVASSP PARTDMQRRDSSGLPPRQGVAIWSGVIRFAKREKLNPRYIGPFRIIERIGPVAYRLEL PPELDRIHNVFHISMLKKYVPDPSHILETPPIELHEDLKFEVKPVRILDRKDRVLRNK SIPMVKVLWKNARMEEMTWEVESQMRNQYPHLLFESGGESSDKGKEIASEDQ" mobile_element 7578781..7579284 /note="source:CACAO_M_E49857_F85_scaffold_7 12655 13158" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7579385..7579776) /note="source:CACAO_M_E44599_F33_scaffold_6 3504 3895" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7579877..7581500) /note="source:CACAO_M_E44265_F33_scaffold_5 1445 3066" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7581141..7603879 /locus_tag="TCM_022793" /note="dbxref CacaoGD:Thecc1EG022793" mRNA join(7581141..7581186,7602903..7603879) /locus_tag="TCM_022793" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.64 coverage" mobile_element complement(7581601..7582852) /note="source:CACAO_M_E12297_F14_scaffold_3 7178 8429" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7583494..7583690) /note="source:CACAO_M_E12297_F14_scaffold_3 6341 6536" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7583691..7584299) /note="source:scaffold_2_CACTA_0259 6653 7256" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7585674..7586663) /note="source:CACAO_M_E58877_F5_scaffold_9 18447 19321" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7586659..7587215 /note="source:INTACT444_F216_scaffold_4-int 2315 2885" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7587216..7588477) /note="source:scaffold_2_CACTA_0259 5408 6664" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7588387..7588496 /note="source:INTACT30F_F12_scaffold_1-int 14635 14745" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7588676..7595227 /note="source:INTACT506_F233_scaffold_3-int 2812 9351" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7591530..7595929) /note="source:CACAO_M_S_E14932_F233_scaffold_2 1 7075" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7596865..7598661 /note="source:CACAO_Mariner_E229_scaffold_9 7267 9090" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 7599288..7600237 /note="source:CACAO_Mariner_E229_scaffold_9 9679 10647" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(7600199..7600246) /note="source:INTACT563_F255_scaffold_10-int 6427 6474" /mobile_element_type="retrotransposon:LTR/Copia" CDS 7602989..7603219 /locus_tag="TCM_022793" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08398.1" /translation="MIKVLTFATSILRHSLLNTELNIRLPQHTIYKRVVKLKYPTKKS REFWRKRCVHLEKIGPKGWMIHFGLIKLPTRL" mobile_element complement(7603671..7603755) /note="source:INTACT506_F233_scaffold_3-int 2743 2825" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7603682..7606307 /note="source:INTACT296_F13_scaffold_9-int 11777 14445" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7608420..7610930) /note="source:CACAO_M_S_E99214_F90_scaffold_9 9948 12481" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(7608452..7625046) /locus_tag="TCM_022794" /note="dbxref CacaoGD:Thecc1EG022794" mRNA complement(join(7608452..7608488,7622963..7623136, 7623289..7623690,7624999..7625046)) /locus_tag="TCM_022794" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete" mobile_element 7608762..7614795 /note="source:INTACT611_F22_scaffold_5-int 207 6235" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7614697..7614902) /note="source:INTACT231_F12_scaffold_4-int 6594 6711" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7614781..7615403 /note="source:CACAO_M_E36038_F90_scaffold_5 2038 2663" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7614918..7616274 /note="source:INTACT595F_F13_scaffold_4-int 2604 4033" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7615587..7616988) /note="source:INTACT295_F13_scaffold_9-int 6464 7973" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7616976..7619528 /note="source:CACAO_M_E36038_F90_scaffold_5 10790 13335" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7619350..7620351) /note="source:CACAO_M_S_E99214_F90_scaffold_9 1 1006" /mobile_element_type="retrotransposon:LTR/Copia" CDS complement(join(7622997..7623136,7623289..7623451)) /locus_tag="TCM_022794" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08399.1" /translation="METIRDPSSSGSSQLISSRGQRNNLLQENMLLTYGDIEVELEKE AKLIGKFNFGEKGAEDNLLFEKNGRCEGRGKVDQEKCMGFSLIPHDGSTRPLDDSL" mobile_element 7625068..7626826 /note="source:CACAO_LINE_E_128_scaffold_5 1 1759" /mobile_element_type="retrotransposon:LINE/L1" gene 7625141..7630035 /locus_tag="TCM_022797" /note="dbxref CacaoGD:Thecc1EG022797" mRNA join(7625141..7625491,7626869..7626879,7626985..7627545, 7627783..7627908,7628011..7628325,7628761..7628889, 7628999..7630035) /locus_tag="TCM_022797" /product="Iaa-amino acid hydrolase 4, putative" /inference="alignment:exonerate-protein:2:frave:gene15613" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022742t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033907001" /note="quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05510t00001" CDS join(7626877..7626879,7626985..7627545,7627783..7627908, 7628011..7628325,7628761..7628889,7628999..7629385) /locus_tag="TCM_022797" /note="paralog of Thecc1EG022742t1" /codon_start=1 /product="Iaa-amino acid hydrolase 4, putative" /protein_id="EOY08400.1" /db_xref="Phytozome:GSVIVT01033907001" /db_xref="TAIR:AT3G02875.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIQ5" /translation="MRKTKQIGSGKVKKIQLPVSKTQADLNVLIPDFLLPDSTRFPKS FFSRSDQRDSKTFLSQLSKFLSKLSSAQLMGFIFCLLLSTFLRQSWALETPSGIELEP LTQELLESARKPVFFEWMREVRRKIHEYPELGFEEHKTSQVIRTELDSLGISYKWPVA KTGVVATIGSGAKPVFSLRADMDGLPIKELVKWEHKSKVDGKMHACGHDSHVAMVLGA AKLLQAKRDELKGTVKLVFQPGEEGYAGAYHMLQDGSLDDIDAIFALHVLPAYPSGIL SSRPGAMTSGAGLFSAIIQGKGGHAALPHLNRDPIVAASFAIVALQQIVSRETDPLEA RVVTVGFIEGGSVENVIPESVRFGGTFRSLTNEGLSYLQKRIKEVIEMQAAVHQCTAT LDFLEDVPLPYPVLSNDEALYEHAKKVGETLVGEANMHLHPVITGAEDFSFFSLKTKA AMFGLGIRNETLKSDQALHSPYFFLDESALPIGAAFHAAVAVSYLDSHVVIQEVLT" gene complement(7630642..7633617) /locus_tag="TCM_022798" /note="dbxref CacaoGD:Thecc1EG022798" mRNA complement(join(7630642..7631109,7631240..7631521, 7631801..7631920,7632502..7632681,7633021..7633533)) /locus_tag="TCM_022798" /product="Nitrilase 4 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s22420.1" /inference="similar to AA sequence:ricco:30032.m000457" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3475t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3475t3" mRNA complement(join(7630642..7631109,7631240..7631521, 7631801..7631920,7632062..7632094,7632502..7632681, 7633021..7633533)) /locus_tag="TCM_022798" /product="Nitrilase 4 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s22420.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041340t2" /inference="similar to AA sequence:ricco:30032.m000457" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3475t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3475t3" mRNA complement(join(7630666..7631109,7631240..7631521, 7631801..7632094,7632502..7632681,7633021..7633617)) /locus_tag="TCM_022798" /product="Nitrilase 4 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s22420.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041340t2" /inference="similar to AA sequence:ricco:30032.m000457" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3475t3" CDS complement(join(7630946..7631109,7631240..7631521, 7631801..7631920,7632502..7632681,7633021..7633420)) /locus_tag="TCM_022798" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30032.m000457" /codon_start=1 /product="Nitrilase 4 isoform 3" /protein_id="EOY08403.1" /db_xref="TAIR:AT5G22300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SWZ9" /translation="MDSQTQTVDRQQQSFLPGTAKQEAGTLSLRPSKKRRRDKGDRHT KVEGRDRRIRIPLTCCSGVFRLTREMGHRTHGQTIQWLLQQSRPDLLLPDPMSCPSRL IGSAPDCMAKGRVRATVVQASTVFLDTPATLDKAERLIAGAAAYGSQLVVFPEAFVGG YPRGVSFEAVAVPSSTEDNEVFLKYHASAIEVPVWCSGEKSSLPLYGTTIGKVGGLLY WDNRIPSLRTQLYDKGIEIYCAPTADAREEWRASMIHIAIEGRCFVLSANQFCQRKDY PLPLKCIDGDSNGDLSLDTIICSGGSVIVSPSGTILAGPNYHGESLVSADLDLEEITR AKLEVSETGHIVGPDSVGWAANRPNPVIFPTAVKAEALDELSWSPGL" CDS complement(join(7630946..7631109,7631240..7631521, 7631801..7631920,7632062..7632094,7632502..7632681, 7633021..7633420)) /locus_tag="TCM_022798" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30032.m000457; paralog of Thecc1EG041340t2" /codon_start=1 /product="Nitrilase 4 isoform 2" /protein_id="EOY08402.1" /db_xref="TAIR:AT5G22300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SWZ9" /translation="MDSQTQTVDRQQQSFLPGTAKQEAGTLSLRPSKKRRRDKGDRHT KVEGRDRRIRIPLTCCSGVFRLTREMGHRTHGQTIQWLLQQSRPDLLLPDPMSCPSRL IGSAPDCMAKGRVRATVVQASTVFLDTPATLDKAERLIAGAAAYGSQLVVFPEAFVGG YPRGVSFEAVAVPSSTEDNEVFLKYHASAIEVPGPEVDRLAKIAVWCSGEKSSLPLYG TTIGKVGGLLYWDNRIPSLRTQLYDKGIEIYCAPTADAREEWRASMIHIAIEGRCFVL SANQFCQRKDYPLPLKCIDGDSNGDLSLDTIICSGGSVIVSPSGTILAGPNYHGESLV SADLDLEEITRAKLEVSETGHIVGPDSVGWAANRPNPVIFPTAVKAEALDELSWSPGL " CDS complement(join(7630946..7631109,7631240..7631521, 7631801..7632094,7632502..7632681,7633021..7633420)) /locus_tag="TCM_022798" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30032.m000457; paralog of Thecc1EG041340t2" /codon_start=1 /product="Nitrilase 4 isoform 1" /protein_id="EOY08401.1" /db_xref="TAIR:AT5G22300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SWZ9" /translation="MDSQTQTVDRQQQSFLPGTAKQEAGTLSLRPSKKRRRDKGDRHT KVEGRDRRIRIPLTCCSGVFRLTREMGHRTHGQTIQWLLQQSRPDLLLPDPMSCPSRL IGSAPDCMAKGRVRATVVQASTVFLDTPATLDKAERLIAGAAAYGSQLVVFPEAFVGG YPRGVSFEAVAVPSSTEDNEVFLKYHASAIEVPGPEVDRLAKIAGKYKVYLVMGVVER AGFYLFSAILFFDSMGRYLGKHRKLMPIASECAVWCSGEKSSLPLYGTTIGKVGGLLY WDNRIPSLRTQLYDKGIEIYCAPTADAREEWRASMIHIAIEGRCFVLSANQFCQRKDY PLPLKCIDGDSNGDLSLDTIICSGGSVIVSPSGTILAGPNYHGESLVSADLDLEEITR AKLEVSETGHIVGPDSVGWAANRPNPVIFPTAVKAEALDELSWSPGL" mobile_element 7635064..7636211 /note="source:CACAO_M_E69381_F13_scaffold_9 5390 6536" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7636013..7639203) /note="source:INTACT586_F13_scaffold_2-int 1 3222" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7639149..7639217) /note="source:CACAO_M_E42514_F40_scaffold_5 14433 14501" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7644209..7644382 /note="source:CACAO_M_S_E4413_F3_scaffold_1 16920 17095" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7644447..7644570 /note="source:CACAO_M_S_E4413_F3_scaffold_1 224 366" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7647808..7649816 /note="source:CACAO_M_S_E4413_F3_scaffold_1 363 2413" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7647817..7650310) /note="source:CACAO_M_S_E119615_F3_scaffold_9 16123 18639" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7650311..7653306 /note="source:CACAO_M_S_E52518_F7_scaffold_5 1 2996" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7653307..7654827) /note="source:CACAO_M_E12058_F3_scaffold_2 3815 5321" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7654822..7657434 /note="source:CACAO_M_S_E16543_F3_scaffold_2 4035 6715" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7655419..7658027) /note="source:INTACT607_F3_scaffold_4-int 934 3600" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7658775..7659361 /note="source:CACAO_M_E58601_F7_scaffold_9 4312 4878" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7660672..7670656 /note="source:INTACT145_F153_scaffold_5-int 1 17680" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7670784..7671168) /note="source:INTACT597_F267_scaffold_2-int 9505 9880" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7671146..7671197 /note="source:INTACT224_F176_scaffold_8-int 2501 2552" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7671161..7671209 /note="source:INTACT405F_F91_scaffold_4-int 7567 7616" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7671199..7671357) /note="source:CACAO_M_S_E119615_F3_scaffold_9 829 987" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7671372..7671862 /note="source:CACAO_M_S_E15974_F3_scaffold_2 1198 1686" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7671986..7672504) /note="source:INTACT597_F267_scaffold_2-int 8137 8664" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7671987..7672327 /note="source:CACAO_M_S_E17060_F3_scaffold_3 3037 3397" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7673495..7673626 /note="source:INTACT33_F7_scaffold_5-int 10891 11014" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7674230..7675710 /note="source:CACAO_M_S_E121173_F7_scaffold_10 1503 2989" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7676672..7676806 /note="source:CACAO_M_E48538_F49_scaffold_6 12214 12349" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7678048..7700897 /locus_tag="TCM_022803" /note="dbxref CacaoGD:Thecc1EG022803" mRNA join(7678048..7678156,7694495..7694644,7698091..7700897) /locus_tag="TCM_022803" /product="Retrotransposon-like protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400005865.7" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013127t1" /inference="similar to AA sequence:Phytozome:Glyma18g33480.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.39 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc1Loc8767t1_G3" mobile_element 7679200..7680312 /note="source:CACAO_M_E48538_F49_scaffold_6 4574 5669" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7681922..7683377 /note="source:INTACT103_F9_scaffold_4-int 18827 20263" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7683389..7683577 /note="source:CACAO_M_E48538_F49_scaffold_6 11277 11469" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7683578..7685461) /note="source:CACAO_M_E11611_F306_scaffold_2 1217 3097" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7685462..7688449 /note="source:CACAO_M_S_E52527_F7_scaffold_5 1 2988" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7688450..7688528) /note="source:INTACT95_F143_scaffold_9-int 14860 14938" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7688544..7689653) /note="source:CACAO_M_E42809_F5_scaffold_5 14103 15240" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7689651..7690131 /note="source:CACAO_M_E48538_F49_scaffold_6 11465 11908" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7690363..7690633 /note="source:CACAO_M_E48538_F49_scaffold_6 12163 12404" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7691728..7692148 /note="source:CACAO_M_E43251_F322_scaffold_5 1 338" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7694023..7694910 /note="source:CACAO_M_E45504_F98_scaffold_6 2522 3409" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(7694547..7694644,7698091..7699957) /locus_tag="TCM_022803" /note="paralog of Thecc1EG013127t1" /codon_start=1 /product="Retrotransposon-like protein" /protein_id="EOY08404.1" /db_xref="Phytozome:Glyma18g33480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A2I5E5" /translation="MFPLRWQIDHGHPPREAEVDVAGSLGRWGWIRLGRPTNATPLAW SEFSVAFLDRFLPLSVRNARAREFETLVQTSSMTVSEYDIKFTQLARYAPYLVSTEEM KIQRFVDGLVEPLFRAVASRDFTTYSAAVDRAQRIEMRTNESRAARDRAKRGKTEGYQ GRRDFSSGGSSSSRQGPQRDSRLPQQGSDAPGANIRVGQRTFNSRRQQDSRQSSQVIR SCDTCGRRHSGRCFLTTKTCYGCGQPGHIRRDCPMAHQSPDSARGSTQPASSAPSVAV SSGREVSGSRGRGAGTSSQGKPSGSGHQSSIGRGQARVFALTQQEAQTSNAVVSGILS VCNMNARVLFDPGATHSFISPCFASRLGRGRVRREEQLVVSTPLKEIFVAEWEYESCV VRVKDKDTSVNLVVLDTLDFDVILGMNWLSPCHASVDCYHKLVRFDFPGEPSFSIQGD RSNAPTNLISVISARRLLRQGCIGYLAVVKDSQAKIGDVTQVSVVKEFVDVFPEELPG LPPEREVEFCIDLIPDTRPISIPPYRMAPAELKELKDQLEDLLDKGFIRPSVSPWGAP VLFVKKKDGSLRLCIDYRQLNKVTVKNKYPLPRIDDLFDQLQGAQCFSKIDLRSXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX" mobile_element 7698078..7699852 /note="source:CACAO_M_E45504_F98_scaffold_6 3565 5339" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7699953..7701381 /note="source:INTACT99F_F96_scaffold_2-int 75 1505" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7701618..7702620 /note="source:INTACT99F_F96_scaffold_2-int 1742 2744" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7703966..7704143) /note="source:INTACT33_F7_scaffold_5-int 11441 11610" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7704857..7705351) /note="source:INTACT601_F12_scaffold_10-int 597 1091" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7705352..7709896 /note="source:INTACT116_F12_scaffold_7-int 1 3699" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7709886..7715466) /note="source:CACAO_M_S_E146165_F12_scaffold_12 1 5573" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7716322..7716342) /note="source:CACAO_M_E58148_F12_scaffold_9 10931 10958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7716343..7719028 /note="source:CACAO_M_E34804_F369_scaffold_5 1 2686" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7721417..7721493 /note="source:INTACT292_F22_scaffold_5-int 9535 9619" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7721421..7721510) /note="source:INTACT277_F12_scaffold_9-int 100 195" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7731524..7732818 /locus_tag="TCM_022805" /note="dbxref CacaoGD:Thecc1EG022805" mRNA join(7731524..7731634,7731752..7732818) /locus_tag="TCM_022805" /product="Short chain alcohol dehydrogenase, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s07480.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022820t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s07480.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3451t1" CDS join(7731597..7731634,7731752..7732547) /locus_tag="TCM_022805" /note="paralog of Thecc1EG022820t1" /codon_start=1 /product="Short chain alcohol dehydrogenase, putative" /protein_id="EOY08405.1" /db_xref="Phytozome:POPTR_0016s07480.1" /db_xref="TAIR:AT2G47140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SW07" /translation="MSANSSVASNLRRLQGKVALITGGASGIGECTARLFVHQGAKVV IADIQDDLGQSICEELGHQSISYVHCDVTRDSDVRNAVDLAVSTYGSLDIMFNNAGIA GPDKSIVSSDDEKFKKVLDVNVFGGYLGAKYAAKVMIPARKGCILFTSSVFSVIGGTD AGHAYVTSKHALVGLAKNLCVELGQYGIRVNCISPFGVATPLLRKPFGMMEKEKVEEL VSKGANLKGTVLKPDDVAQAALYLASDESKYVSGLNLVIDGGYSTTNPSMSTVIKSLF S" mobile_element complement(7735704..7737305) /note="source:CACAO_M_E35811_F12_scaffold_5 16034 17644" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7737280..7737404) /note="source:CACAO_M_S_E64608_F12_scaffold_5 10542 11630" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7737405..7738370) /note="source:CACAO_on_E279_scaffold_9 805 1752" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 7744580..7747555 /note="source:CACAO_M_S_E52537_F15_scaffold_5 1 3503" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7751776..7762755 /note="source:INTACT209_F33_scaffold_5-int 1 10980" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7764805..7764977) /note="source:CACAO_M_S_E119615_F3_scaffold_9 13481 13636" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7764819..7764924 /note="source:INTACT126_F14_scaffold_3-int 1124 1228" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7765192..7765324) /note="source:CACAO_M_E44503_F22_scaffold_6 8127 8267" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7765476..7768015) /note="source:CACAO_M_E58728_F12_scaffold_9 2891 5497" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7767938..7768025 /note="source:INTACT1443F_F12_scaffold_9-int 10865 10951" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7770503..7773243 /note="source:CACAO_M_E34814_F15_scaffold_5 1 3478" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7775234..7775314 /note="source:scaffold_1_CACTA_0011 5257 5338" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7775250..7775316 /note="source:CACAO_M_S_E89272_F5_scaffold_8 6748 6817" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7777942..7779029) /note="source:CACAO_M_E69551_F193_scaffold_9 59 1157" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7779016..7779816 /note="source:INTACT537_F22_scaffold_2-int 1112 1937" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7779818..7781406) /note="source:scaffold_4_CACTA_0493 44 1625" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7781792..7783657) /note="source:INTACT224_F176_scaffold_8-int 10785 12269" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7783658..7786640 /note="source:CACAO_M_S_E52548_F52_scaffold_5 1 2970" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7786641..7791366) /note="source:INTACT224_F176_scaffold_8-int 5996 10416" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7791027..7791368 /note="source:CACAO_M_E5326_F22_scaffold_2 750 1082" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7791360..7791433 /note="source:INTACT293_F14_scaffold_5-int 8671 8743" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7791369..7794564) /note="source:CACAO_M_E5899_F5_scaffold_2 19649 22689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7794562..7801652 /note="source:CACAO_M_E45234_F22_scaffold_6 1079 8196" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7801653..7810900 /note="source:INTACT1218F_F372_scaffold_6-int 1 8341" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(7808479..7813303) /locus_tag="TCM_022818" /note="dbxref CacaoGD:Thecc1EG022818" mRNA complement(join(7808479..7809345,7812761..7813303)) /locus_tag="TCM_022818" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400057828.10" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009243t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00432t00003" CDS complement(7808570..7809316) /locus_tag="TCM_022818" /note="paralog of Thecc1EG009243t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08406.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I815" /translation="MMATHMEDIQRVVEGRPIVQESLSSQGQADCQYREVERGHLEIS LPDFLKLKPPSFSGSDALEKPQVFLDKMEKICKALGCSSVRSVELAAFRLEDVAQEWY SSLCKGRPTDAAPLAWSEFSAAFLDRFLPLSVCNARTREFETLVQTSSMTVSEYDIKF TQLSRYAPYLVSTEEMKIQRFVDGLVEPLFRVVASQDFTTYSAVVDCAQHIEMRTSES RATRDRAKRTRTEGYQGHRDFNSGGSSSNR" mobile_element complement(7809800..7812792) /note="source:CACAO_M_E42586_F54_scaffold_5 1 2938" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7812793..7814699 /note="source:CACAO_M_E45234_F22_scaffold_6 8192 10083" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7820755..7821448 /note="source:CACAO_M_E42395_F3_scaffold_5 1073 1774" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7825561..7827096 /locus_tag="TCM_022820" /note="dbxref CacaoGD:Thecc1EG022820" mRNA join(7825561..7825640,7826093..7827096) /locus_tag="TCM_022820" /product="Short chain alcohol dehydrogenase, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s07470.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022825t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s07470.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13664t1" CDS join(7825609..7825640,7826093..7826906) /locus_tag="TCM_022820" /note="paralog of Thecc1EG022825t1" /codon_start=1 /product="Short chain alcohol dehydrogenase, putative" /protein_id="EOY08407.1" /db_xref="Phytozome:POPTR_0016s07470.1" /db_xref="TAIR:AT3G26770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SW07" /translation="MNAGQSLVAKRLEGKVALITGGASGIGESTARLFVKHGAKVLIA DIQDELGHSLCKELGTPDFISYIHCDVTCETDVQNAVDLAVSEYGKLDIMFNNAGIPG DLEIRAITSDIENFKRVLDVNVFGAFLGAKHAARVMIPAKKGCILFTASVASLVCLGI SHAYTTSKHAVVGMTKSLSVELGEYGIRVNCISPHAVVTPLLQKTLGILDKRKGEEIL STTAVLKGTILEPEDVAQAALFLASDEAKYLSGVNLPVDGGYSLNNPTWKTGLQNCNE NIQPS" mobile_element 7828017..7828740 /note="source:CACAO_M_E58601_F7_scaffold_9 8818 9547" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 7833262..7835933 /locus_tag="TCM_022821" /note="dbxref CacaoGD:Thecc1EG022821" mRNA join(7833262..7833330,7833411..7833683,7834478..7834657, 7834843..7835019,7835174..7835933) /locus_tag="TCM_022821" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(7833316..7833330,7833411..7833683,7834478..7834657, 7834843..7835019,7835174..7835494) /locus_tag="TCM_022821" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08408.1" /translation="MYVKIVARTGTEQENVEALLCEPRDQWGFNAGINIHYKWTRLYV IREVLWKENELDMMKRTCFGNLMDVKLENVNSALVSCITYCYVESINLAPSRLRALGT LELSAEEILKAYWVDIDVHLSEGHQYIPLWQLDGRVEFHLEQKKKIMEHKEEKVDTMD EGTSITAEGDVDAVNTDRGVARHTSVDVINAARDPTIDAAVDVVNATTNLIGNAKDNV CSKKGIDMGVDLDEPNGINDLIASTQSSPLTTLYTTSLESITSTKTPHPACSPTPRTP LFARSPTPSEAPHLTCNPSPLKAPSKFKAHLLFKLYLYLESKMHG" mobile_element 7839266..7839371 /note="source:CACAO_M_E50182_F369_scaffold_7 1 105" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7839510..7839548) /note="source:scaffold_2_CACTA_0260 462 501" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7839548..7839869) /note="source:scaffold_2_CACTA_0260 26 345" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7840006..7840062) /note="source:CACAO_M_E42395_F3_scaffold_5 17155 17211" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7840070..7843090) /note="source:CACAO_M_E5899_F5_scaffold_2 19652 22692" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7843085..7845574) /note="source:CACAO_M_E42395_F3_scaffold_5 15055 17493" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7845831..7848767) /note="source:CACAO_M_S_E145648_F7_scaffold_11 1 2937" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7849110..7852118 /note="source:CACAO_M_S_E52569_F324_scaffold_5 1 3009" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7852119..7852215) /note="source:scaffold_2_CACTA_0260 34 130" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7852226..7852255) /note="source:CACAO_M_E57660_F369_scaffold_9 9405 9434" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7853743..7854885 /note="source:CACAO_M_E5899_F5_scaffold_2 20869 22029" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7854867..7855078 /note="source:CACAO_M_E58601_F7_scaffold_9 5221 5415" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7855205..7855499 /note="source:scaffold_2_CACTA_0260 27 319" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7855525..7855683 /note="source:CACAO_M_S_E4591_F5_scaffold_1 18640 18812" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7855541..7856893) /note="source:CACAO_M_E11054_F12_scaffold_2 7420 8733" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7859726..7862460 /note="source:CACAO_M_E34838_F369_scaffold_5 1 2735" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7866353..7866967 /note="source:scaffold_2_CACTA_0260 3898 4513" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(7867067..7867605) /note="source:CACAO_M_S_E89272_F5_scaffold_8 6734 7162" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7871075..7874175 /note="source:CACAO_M_E34841_F306_scaffold_5 1 3101" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(7876110..7879246) /locus_tag="TCM_022824" /note="dbxref CacaoGD:Thecc1EG022824" mRNA complement(join(7876110..7877168,7879011..7879246)) /locus_tag="TCM_022824" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is paralog medium, intron is none, protein is utrpoor_complete" CDS complement(7876828..7877142) /locus_tag="TCM_022824" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08409.1" /translation="MSKLRVRHWVMVKWLKENFSILDGMRAPSNASTFNNCGFSRKVV AWKPLSNGCFKFNVDKTTRGGLGESSIGRALRDEGGRVKILFSKSIGVGDLNRVEILM TK" gene 7880365..7881597 /locus_tag="TCM_022825" /note="dbxref CacaoGD:Thecc1EG022825" mRNA join(7880365..7880556,7880710..7881597) /locus_tag="TCM_022825" /product="Short chain alcohol dehydrogenase, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s07470.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022820t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s07470.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g10466t00001" CDS join(7880528..7880556,7880710..7881505) /locus_tag="TCM_022825" /note="paralog of Thecc1EG022820t1" /codon_start=1 /product="Short chain alcohol dehydrogenase, putative" /protein_id="EOY08410.1" /db_xref="Phytozome:POPTR_0016s07470.1" /db_xref="TAIR:AT1G52340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SW07" /translation="MSAESSVTKRLEGKVALITGGASGLGESTARLFVQHGAKVLIAD IQDELGHSLCQELGTETISYVHCDVTCESDVQNAVELAVSKYRKLDIMLNNAGIMGHH EVRVTDADTENFKTVFDINVLGGFLGAKHAARVMVPAKKGCILFTASLASKISMGTPH AYKASKHAVVGLTKSLSVELGEYGIRVNCISPHAVATPLFQKTLGVFDKKKGEEAVSA SAVLKGAVLEPEDFANAALYLASDEAKYLSGVNLTIDGGYSLSNQTWKMGLSVLSE" gene complement(7881866..7932337) /locus_tag="TCM_022826" /note="dbxref CacaoGD:Thecc1EG022826" mRNA complement(join(7881866..7883168,7883801..7883984, 7885032..7885221,7885906..7886147,7886382..7886467, 7886921..7887025,7887131..7887233,7887332..7887449, 7887954..7888078,7888939..7889027,7892904..7893012, 7932105..7932337)) /locus_tag="TCM_022826" /product="TLD-domain containing nucleolar protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033921001" /inference="similar to AA sequence:frave:gene15333" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1102t9" CDS complement(join(7882863..7883168,7883801..7883984, 7885032..7885221,7885906..7886147,7886382..7886467, 7886921..7887025,7887131..7887233,7887332..7887449, 7887954..7888078,7888939..7889027,7892904..7893005)) /locus_tag="TCM_022826" /note="dbxref frave:gene15333" /codon_start=1 /product="TLD-domain containing nucleolar protein" /protein_id="EOY08411.1" /db_xref="TAIR:AT5G06260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HBR8" /translation="MDAMVVVHKANVTTRYSLRARDNRRDVSIDIHYPCLLYEMALLL LEYLNLDTRFDPPIAMGKIGLPSFFAMIPPFEGLTPLSQNLNFQAKNEGKIDPKVGSV DINGKRKKRTLTGKFIKVKQSKKRAMGNSQSPPANPRFTSASRSFTPKELEDLKSLFA SLAAQSQSNGQYISSSVFQVYFGLKGPLGDRMFDLATQGRKDDKLSFEDLVTTKGTYE KGTNDEIEEFIYRLLDVTNDEILTRSDLESVLITMFDHIFHLKGSGPGSRSNCYMVDT FLNAASFSKDHDGCNDKSMSFEDFKSWCSLVPSVKKFLASLFVPPDPGRLGSQVPKLQ HLENIDSSVILLRDEYAWHIGGALSQEELEEWKLLYHSALNGLSFNTFLGNVSNNDGP TVLIIKDREGYIFGGYASQPWERHSNFYGDMKSFIFQLYPKASIFRPTGANSNLQWCA VNFSSEAIPNGFGFGGRINHFGLFLSAGFDQGHTFSCTTFNSPCLSKTSQICPEVIEC WGVVRKGMEHEKQDVVKGTVLERFKEERHMLNMVGIANASE" mobile_element complement(7889365..7889456) /note="source:CACAO_LINE_E_211_scaffold_8 7199 7287" /mobile_element_type="retrotransposon:LINE/L1" mobile_element 7889833..7892982 /note="source:CACAO_M_S_E52577_F51_scaffold_5 1 3141" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7893766..7896599 /note="source:CACAO_M_E34844_F15_scaffold_5 1 2834" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7897374..7898162 /note="source:INTACT642F_F365_scaffold_5-int 5910 6733" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7899593..7900835 /note="source:INTACT642F_F365_scaffold_5-int 7968 9216" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7907534..7908473) /note="source:CACAO_M_E234942_F88_scaffold_117 4495 5397" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(7908482..7911420) /note="source:CACAO_M_S_E1384_F72_scaffold_1 1 2942" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7911381..7911426 /note="source:INTACT642F_F365_scaffold_5-int 9228 9273" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7911418..7914531 /note="source:CACAO_M_E57143_F88_scaffold_8 909 4026" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7914536..7915565 /note="source:CACAO_M_E71405_F316_scaffold_10 3249 4238" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 7915533..7915887 /note="source:scaffold_2_CACTA_0259 5424 5749" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7915988..7916049 /note="source:scaffold_3_CACTA_0382 1861 1924" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7915997..7917822 /note="source:INTACT518_F239_scaffold_2-int 8034 9255" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7917823..7919241 /note="source:CACAO_M_E11098_F15_scaffold_2 6240 7682" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7919242..7923801) /note="source:INTACT1223F_F374_scaffold_6-int 4708 9244" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7921001..7924270 /note="source:scaffold_2_CACTA_0259 3325 6619" /mobile_element_type="transposon:TIR/CACTA" mobile_element 7924274..7925497 /note="source:CACAO_M_E12676_F15_scaffold_3 1 1223" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7925498..7928431 /note="source:CACAO_M_E34851_F86_scaffold_5 1 2934" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7928432..7930161 /note="source:CACAO_M_E4333_F15_scaffold_2 9004 10734" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7930162..7931346 /note="source:INTACT518_F239_scaffold_2-int 8071 9255" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7931349..7932385 /note="source:CACAO_M_E11871_F88_scaffold_2 4176 5158" /mobile_element_type="retrotransposon:LTR/Copia" gene 7932636..7937116 /locus_tag="TCM_022828" /note="dbxref CacaoGD:Thecc1EG022828" mRNA join(7932636..7933109,7935200..7935405,7936506..7936591, 7936734..7937116) /locus_tag="TCM_022828" /product="Peptidyl-prolyl cis-trans isomerase G, putative" /inference="alignment:exonerate- protein:2:ricco:28324.m000409" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041323t1" /inference="similar to AA sequence:ricco:28324.m000409" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02573t00001" CDS join(7932951..7933109,7935200..7935367) /locus_tag="TCM_022828" /note="dbxref ricco:28324.m000409; paralog of Thecc1EG041323t1" /codon_start=1 /product="Peptidyl-prolyl cis-trans isomerase G, putative" /protein_id="EOY08412.1" /db_xref="TAIR:AT5G22280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HBR7" /translation="MSRPWLLVFLVFLIVFTSQFEWKQQFGEEIEPTPTVSLKDQYVS KRQESVKEKIILSQERNIQKLNELVRSLREQLLLCRAENEVINGSAFALTEHLTELEQ QPMLDD" mobile_element 7947000..7947243 /note="source:CACAO_on_E203_scaffold_7 26 271" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 7950596..7952140 /locus_tag="TCM_022831" /note="dbxref CacaoGD:Thecc1EG022831" mRNA join(7950596..7950674,7951543..7952140) /locus_tag="TCM_022831" /product="Gb:AAF02129.1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s07430.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041318t1" /inference="similar to AA sequence:frave:gene15328" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g08790t00001" mRNA join(7951266..7951461,7951543..7952094) /locus_tag="TCM_022831" /product="Gb:AAF02129.1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s07430.1" /inference="alignment:exonerate- protein:2:ricco:28324.m000408.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041318t1" /inference="similar to AA sequence:frave:gene15328" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g08790t00001; alternateUTRof:Thecc1EG022831t1; inference alignment:Newbler:10:TSA:cgbaP1_g08790t00001" CDS 7951568..7951909 /locus_tag="TCM_022831" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene15328; paralog of Thecc1EG041318t1" /codon_start=1 /product="Gb:AAF02129.1 isoform 1" /protein_id="EOY08413.1" /db_xref="TAIR:AT5G06270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FNI1" /translation="MSRRNGPKLELKLNLSPPRLNPRVESPSRSATVSPTSPPSSCVS SEMNQDVDASVRYSSSPEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHDT ATTTTIKTRKS" CDS 7951568..7951909 /locus_tag="TCM_022831" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene15328; paralog of Thecc1EG041318t1" /codon_start=1 /product="Gb:AAF02129.1 isoform 1" /protein_id="EOY08414.1" /db_xref="TAIR:AT5G06270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FNI1" /translation="MSRRNGPKLELKLNLSPPRLNPRVESPSRSATVSPTSPPSSCVS SEMNQDVDASVRYSSSPEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHDT ATTTTIKTRKS" gene 7953004..7954019 /locus_tag="TCM_022832" /note="dbxref CacaoGD:Thecc1EG022832" mRNA 7953004..7954019 /locus_tag="TCM_022832" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.43 coverage" CDS 7953015..7953239 /locus_tag="TCM_022832" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08415.1" /translation="MRGITSDDKYKFNSSIVNLFFFAFIFTLFSSLTKCHLSGAIVYF GNPSSTSLSIFSSFNSIFHSFPPPSYLVLA" gene complement(7955532..7959646) /locus_tag="TCM_022833" /note="dbxref CacaoGD:Thecc1EG022833" mRNA complement(join(7955532..7955691,7956203..7958339, 7959401..7959479)) /locus_tag="TCM_022833" /product="Arginine/serine-rich zinc knuckle-containing protein 33, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s22220.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s22220.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3557t1; alternateUTRof:Thecc1EG022833t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3557t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1567t2_C2" mRNA complement(join(7955759..7958338,7959401..7959646)) /locus_tag="TCM_022833" /product="Arginine/serine-rich zinc knuckle-containing protein 33, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s22220.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s22220.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3557t1" CDS complement(7956314..7958338) /locus_tag="TCM_022833" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Arginine/serine-rich zinc knuckle-containing protein 33, putative isoform 1" /protein_id="EOY08416.1" /db_xref="Phytozome:POPTR_0006s22220.1" /translation="MSLYIGHLSSRTRRDELERVFRRFGRCNIRLKDGYGFIVYDYPP NAEKALRALQGRNICGEPLTLTWSNKQPRPLKKFARADQSYDQEPLRVRSSARGRDYG NRKLDINVQHDYKMSIEQPESHGVRLNSADLLNAEIGDQFKEYTREDNHDYGEDLLNE GGQVESNLVDGDRWDGKRHELSDGNNVEHEMEFDRYIGYDKKDDENNRIVYSSGSPAA QSPQKKIVRELISEGTLNHLNDSKAQQACYSCGALGHRKHNCPRENTSGRYFSRFDRR HHDEIGSSSRAKLQQDKDPLTTKRSKDRKESGSGKSGRLIENGSSLFAKETDRAWEKD YRGKKRSRRRGGTPKRHSEKKARPISSPLHPDYNAARSRSKSKSLEHVLRSVSQSRSR SVPSRACSSSTNLRSSPVSYYSRSRSSKSNLRSSCPTSLSLSVSLGRPSSSLLNKGQL NLKGTLDNSTTPESKEIMVFGEPGKGDVELENEKLENRVGPVNIENARLSAKVENEVE KDQGMQIGNSDDHMKPRSVPQVKIPSISISEKGALAAGILSSESLGEIKGSEDFDTLT TEDVMVPPKKTDSELTSSRSTSILPDELSMVMKHYGLEPPDENEMHLSAEAYFGCACL WPWEIVYYRRLKKGPISTENYARRVAQNKEFGIVDKYIRSSSGWGQQNHP" CDS complement(7956314..7958338) /locus_tag="TCM_022833" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Arginine/serine-rich zinc knuckle-containing protein 33, putative isoform 1" /protein_id="EOY08417.1" /db_xref="Phytozome:POPTR_0006s22220.1" /translation="MSLYIGHLSSRTRRDELERVFRRFGRCNIRLKDGYGFIVYDYPP NAEKALRALQGRNICGEPLTLTWSNKQPRPLKKFARADQSYDQEPLRVRSSARGRDYG NRKLDINVQHDYKMSIEQPESHGVRLNSADLLNAEIGDQFKEYTREDNHDYGEDLLNE GGQVESNLVDGDRWDGKRHELSDGNNVEHEMEFDRYIGYDKKDDENNRIVYSSGSPAA QSPQKKIVRELISEGTLNHLNDSKAQQACYSCGALGHRKHNCPRENTSGRYFSRFDRR HHDEIGSSSRAKLQQDKDPLTTKRSKDRKESGSGKSGRLIENGSSLFAKETDRAWEKD YRGKKRSRRRGGTPKRHSEKKARPISSPLHPDYNAARSRSKSKSLEHVLRSVSQSRSR SVPSRACSSSTNLRSSPVSYYSRSRSSKSNLRSSCPTSLSLSVSLGRPSSSLLNKGQL NLKGTLDNSTTPESKEIMVFGEPGKGDVELENEKLENRVGPVNIENARLSAKVENEVE KDQGMQIGNSDDHMKPRSVPQVKIPSISISEKGALAAGILSSESLGEIKGSEDFDTLT TEDVMVPPKKTDSELTSSRSTSILPDELSMVMKHYGLEPPDENEMHLSAEAYFGCACL WPWEIVYYRRLKKGPISTENYARRVAQNKEFGIVDKYIRSSSGWGQQNHP" mobile_element 7962519..7965349 /note="source:CACAO_M_E34853_F15_scaffold_5 1 2831" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7966273..7966528 /note="source:CACAO_M_E13038_F22_scaffold_3 10682 10932" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7966529..7973017 /note="source:CACAO_M_E42630_F86_scaffold_5 1 6497" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7973018..7973294) /note="source:CACAO_M_E34862_F87_scaffold_5 2521 2792" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7973231..7974569 /note="source:CACAO_M_E34124_F86_scaffold_4 1583 2921" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7974571..7975574 /note="source:CACAO_M_E13038_F22_scaffold_3 10935 11943" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7975558..7975689 /note="source:CACAO_M_E44899_F328_scaffold_6 9890 10024" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7975687..7983479 /note="source:CACAO_M_S_E122077_F328_scaffold_10 1413 9256" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7983480..7986271 /note="source:CACAO_M_E34862_F87_scaffold_5 1 2792" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7986272..7987178 /note="source:CACAO_M_S_E122077_F328_scaffold_10 9252 10198" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7987121..7987184) /note="source:CACAO_M_S_E64023_F13_scaffold_5 16481 16544" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7990600..7991423 /note="source:CACAO_M_E44833_F33_scaffold_6 1 825" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7991423..7993232 /note="source:CACAO_M_S_E64023_F13_scaffold_5 16487 18326" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7994760..7996880 /note="source:CACAO_M_E13376_F33_scaffold_3 816 2938" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(7998892..7998906) /note="source:CACAO_M_E69460_F12_scaffold_9 10824 10840" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 7998907..8004477 /note="source:CACAO_M_S_E66372_F33_scaffold_5 1 5591" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8004478..8012505 /note="source:INTACT540_F242_scaffold_5-int 1 8028" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8012506..8017901 /note="source:CACAO_M_S_E66372_F33_scaffold_5 5587 10906" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 8021059..8025069 /locus_tag="TCM_022842" /note="dbxref CacaoGD:Thecc1EG022842" mRNA join(8021059..8021614,8023839..8023978,8024387..8024512, 8024861..8025069) /locus_tag="TCM_022842" /product="Ubiquitin E2 variant 1D-4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s07400.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011026t1" /inference="similar to AA sequence:Phytozome:Glyma02g35990.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g07181t00001" CDS join(8021581..8021614,8023839..8023978,8024387..8024512, 8024861..8025001) /locus_tag="TCM_022842" /note="paralog of Thecc1EG011026t1" /codon_start=1 /product="Ubiquitin E2 variant 1D-4" /protein_id="EOY08418.1" /db_xref="Phytozome:Glyma02g35990.1" /db_xref="TAIR:AT3G52560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SVD7" /translation="MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDI YMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVE PKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF" misc_feature join(8021777..8022571,8023839..8023848) /locus_tag="TCM_022842" /note="Gene fragment of Thecc1EG022842t1; dbxref gnl|CacaoGD|Thecc1EG022842t1; quality class is mediumpartial-partof is thecc1eg022842t1, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc2061t1; dbxref CacaoGD:Thecc1EG022843t1" gene 8026559..8028125 /locus_tag="TCM_022844" /note="dbxref CacaoGD:Thecc1EG022844" mRNA 8026559..8028125 /locus_tag="TCM_022844" /product="Polynucleotidyl transferase" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g35800.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041300t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s22200.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaB_g11560t00001" CDS 8027018..8027875 /locus_tag="TCM_022844" /note="paralog of Thecc1EG041300t1" /codon_start=1 /product="Polynucleotidyl transferase" /protein_id="EOY08419.1" /db_xref="Phytozome:POPTR_0006s22200.1" /db_xref="TAIR:AT5G22250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIP4" /translation="MSDTLPPPRGSVVIRSVWSDNLESEFELIRSVIDGFPIISMDTE FPGIVVRPISPGGGGGGQYARPGDARAHYVSLKANVDLLKLIQIGLTFSDGNGNLPDL GTKNQYIWEFNFKDFNVANDAHAHDSVELLRRQGIDFEKNRELGIDSVRFAELMMSSG LVLNDAVTWVTFHCAYDFGYLVKCLTGELLPDQLTDFLDVVRMFFGDRVYDVKHLMRF CAGLYGGLDRASKALGVERVIGKSHQAGSDSLLTLDAWLEVKKRYFGKEDSVEKYANV LYGLEVDSL" mobile_element complement(8034355..8034422) /note="source:CACAO_M_E35811_F12_scaffold_5 21208 21278" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8034967..8037920) /note="source:INTACT607_F3_scaffold_4-int 10872 13859" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8037922..8040032) /note="source:CACAO_M_E12058_F3_scaffold_2 3010 5119" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8040032..8041118) /note="source:CACAO_M_E58962_F13_scaffold_9 14368 15263" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8041115..8042222 /note="source:INTACT319_F3_scaffold_1-int 7788 8921" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8042223..8045518 /note="source:CACAO_M_S_E52605_F82_scaffold_5 1 3296" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8045428..8045531) /note="source:CACAO_M_S_E5285_F300_scaffold_1 6625 6725" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8045520..8046656) /note="source:INTACT607_F3_scaffold_4-int 841 2008" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8049697..8049855) /note="source:CACAO_M_E69460_F12_scaffold_9 10632 10784" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8049980..8050432) /note="source:scaffold_2_CACTA_0256 13263 13716" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8050433..8053163 /note="source:CACAO_M_S_E52608_F15_scaffold_5 1 2731" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8053164..8055195) /note="source:CACAO_M_E71568_F73_scaffold_10 1 1811" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8056243..8058797 /note="source:CACAO_M_S_E17777_F2_scaffold_3 9337 11911" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8059260..8059972 /note="source:CACAO_M_S_E5285_F300_scaffold_1 17251 17943" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8062763..8062839 /note="source:scaffold_1_CACTA_0011 7456 7533" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8062771..8062846) /note="source:scaffold_5_CACTA_0584 1969 2042" /mobile_element_type="transposon:TIR/CACTA" gene 8064310..8065519 /locus_tag="TCM_022847" /note="dbxref CacaoGD:Thecc1EG022847" mRNA 8064310..8065519 /locus_tag="TCM_022847" /product="Ovate family protein 13, putative" /inference="alignment:exonerate- protein:2:ricco:28324.m000402" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044283t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s22190.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g12751t00001" CDS 8064691..8065470 /locus_tag="TCM_022847" /note="paralog of Thecc1EG044283t1" /codon_start=1 /product="Ovate family protein 13, putative" /protein_id="EOY08420.1" /db_xref="Phytozome:POPTR_0006s22190.1" /db_xref="TAIR:AT5G04820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HBR2" /translation="MGKKMKLPFLSKNTIQAKSSWPWPSCHQPRTLSFRTDDSLFKTI NSAYLDAIIEAETPESWFSNSSESASFSTASDESGGDPVETVIRGLRSERLFFEPGET SSILEEAKPSGLPFKESVVLSMESQDPFADFRKSMEEMVEAHGLKDWGGLEELLCWYL RVNGKSNHGYIVGAFVDLLVGLALSSTAIPCCSNCSHSPSSPLSFYTSSSSEDSSTTP CVSSLEAEEEIDNTSHCLSSLLEAEKEITEDKDDASSSLDV" gene complement(8075733..8077278) /locus_tag="TCM_022848" /note="dbxref CacaoGD:Thecc1EG022848" mRNA complement(8075733..8077278) /locus_tag="TCM_022848" /product="Ovate family protein, putative" /inference="similar to AA sequence:ricco:28324.m000401" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1555t2_C2; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1555t2_C1" CDS complement(8076458..8077222) /locus_tag="TCM_022848" /note="dbxref ricco:28324.m000401" /codon_start=1 /product="Ovate family protein, putative" /protein_id="EOY08421.1" /db_xref="TAIR:AT2G36026.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIP1" /translation="MDPPCSHAGFIDNFPMFSQLPHPNSKVQAKALFSLFFAPCTLNS KTSHFLSLLKMSSNRKKLILNTVSVSLGCSSCKKPKLTSFFNPKPKPKPKPKPKSRSY NTHSFYNYSSSSSSKKTTHCSFSEYETATSFSPSTDTPEHWDMDTDTDQEIEGSMATV RGFGRVGGESLAVEKDSDDPYLDFRHSMLQMILEKEIYSKDDLRELLNCFLQLNSPHH HGIIVRAFTEIWNGVFSVKPGGASPKLHFGYRPRDF" mobile_element complement(8078680..8080104) /note="source:CACAO_M_E84368_F4_scaffold_10 4719 6146" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8082019..8082214) /note="source:INTACT1330F_F382_scaffold_8-int 12737 12921" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(8082653..8087532) /locus_tag="TCM_022849" /note="dbxref CacaoGD:Thecc1EG022849" mRNA complement(join(8082653..8083351,8084172..8084276, 8085054..8085104,8085303..8085450,8085923..8086005, 8086103..8086158,8086964..8087008,8087480..8087532)) /locus_tag="TCM_022849" /product="Alpha/beta-Hydrolases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400028718" /inference="similar to AA sequence:ricco:28324.m000399" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:PASA:2:TSA:puevd3b022122t1a2; inference alignment:Newbler:10:TSA:cgbaB_g02328t00001_C1" mRNA complement(join(8082909..8083351,8084172..8084276, 8085054..8085104,8085303..8085450,8085923..8086005, 8086103..8086162,8086964..8087008,8087480..8087530)) /locus_tag="TCM_022849" /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400028718" /inference="similar to AA sequence:ricco:28324.m000399" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02328t00001_C1; inference alignment:Newbler:10:TSA:cgbaB_g02328t00001_C1" CDS complement(join(8083205..8083351,8084172..8084276, 8085054..8085104,8085303..8085450,8085923..8086005, 8086103..8086162,8086964..8087008)) /locus_tag="TCM_022849" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28324.m000399" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 1" /protein_id="EOY08422.1" /db_xref="TAIR:AT3G11620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WPD9" /translation="MEFIKGQNIEVPLVLVGHSIGSYISLEMLRRLPKKAVYCIGLYP FLALNLQSKKQSTIVRIAMSRVLSTVLSFLVASFGLLPRQVLRLIFKLSVGKSWSNTA LEAGCSHLPQYHTMRNVLFMARTEFSKLSETPDWEFMRENQDKITFLYGIDDHWGPLK MFEEISKQASGIALSIEREGHTHGFCCTEAGSLWVARHVASLIKNNLAISSW" CDS complement(join(8083205..8083351,8084172..8084276, 8085054..8085104,8085303..8085450,8085923..8086005, 8086103..8086126)) /locus_tag="TCM_022849" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28324.m000399" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 2" /protein_id="EOY08423.1" /db_xref="TAIR:AT3G11620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WPD9" /translation="MLRRLPKKAVYCIGLYPFLALNLQSKKQSTIVRIAMSRVLSTVL SFLVASFGLLPRQVLRLIFKLSVGKSWSNTALEAGCSHLPQYHTMRNVLFMARTEFSK LSETPDWEFMRENQDKITFLYGIDDHWGPLKMFEEISKQASGIALSIEREGHTHGFCC TEAGSLWVARHVASLIKNNLAISSW" mRNA complement(join(8083328..8084269,8085054..8085104, 8085303..8085450,8085923..8086005,8086103..8086162, 8086964..8087505)) /locus_tag="TCM_022849" /product="Alpha/beta-Hydrolases superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400028718" /inference="similar to AA sequence:Phytozome:Glyma03g35830.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1099t5; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc734t2; inference alignment:Newbler:10:TSA:cgbaB_g02328t00001_C1" CDS complement(join(8084246..8084269,8085054..8085104, 8085303..8085450,8085923..8086005,8086103..8086162, 8086964..8087008)) /locus_tag="TCM_022849" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein isoform 3" /protein_id="EOY08424.1" /db_xref="Phytozome:Glyma03g35830.1" /db_xref="TAIR:AT3G11620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WPD9" /translation="MEFIKGQNIEVPLVLVGHSIGSYISLEMLRRLPKKAVYCIGLYP FLALNLQSKKQSTIVRIAMSRVLSTVLSFLVASFGLLPRQVLRLIFKLSVGKSWSNTA LEAGCSHLPQYHTMRNVLFMARTEFSKKHQIGNL" mobile_element complement(8087737..8087808) /note="source:CACAO_M_S_E52027_F3_scaffold_5 3872 3942" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 8088893..8091777 /locus_tag="TCM_022850" /note="dbxref CacaoGD:Thecc1EG022850" mRNA join(8088893..8089252,8089378..8089477,8089609..8089698, 8089858..8089956,8090751..8090807,8090884..8090947, 8091035..8091244,8091507..8091777) /locus_tag="TCM_022850" /product="HVA22-like protein J, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s22170.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034210t2" /inference="similar to AA sequence:Phytozome:POPTR_0006s22170.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11886t00001" CDS join(8089667..8089698,8089858..8089956,8090751..8090807, 8090884..8090947,8091035..8091244,8091507..8091749) /locus_tag="TCM_022850" /note="paralog of Thecc1EG034210t2" /codon_start=1 /product="HVA22-like protein J, putative" /protein_id="EOY08425.1" /db_xref="Phytozome:POPTR_0006s22170.1" /db_xref="TAIR:AT2G36020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B1P6" /translation="MLGEFITRLLILILGYAYPALECFKTVEKNKVEIEELRFWCQYW IVVAFLTVFERIGDLFISWLPMYGELKLTLLIYLWYPKTKGTGYVYDTLLRPYMVRHE TEVDRKIQELRARAWDFALYYWQNCTELGQTKFFEMFQYLAGQSSRLKHGNQKSDQQN PPNGSRSQSGKSKNWPPTTINRAVVEFPKSKLVHFQPDSQSEHDQSDDDSIPDSPCNS KLRQARFKPRRTKPHN" gene complement(8091784..8092888) /locus_tag="TCM_022851" /note="dbxref CacaoGD:Thecc1EG022851" mRNA complement(join(8091784..8092606,8092702..8092888)) /locus_tag="TCM_022851" /product="COPII coat assembly protein SEC16, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s07330.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s07330.1" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc335t9" CDS complement(join(8091980..8092606,8092702..8092800)) /locus_tag="TCM_022851" /codon_start=1 /product="COPII coat assembly protein SEC16, putative" /protein_id="EOY08426.1" /db_xref="Phytozome:POPTR_0016s07330.1" /translation="MNPLKENVLMKLKEINNKKPTKGLMSNAPLESRPPLETSSQREL TSHFHCFFLPSSTMDDEPEQPPLSTLGRRNSISSPVQLPRRLTLLTPKPLQTANSLPN GSASSSPLDLELISLKTSLASYTSLKDILPSSAVAINSPTAAGSATNSGYEISIRNRL VKQAAWAYLQPMSASPDSSGPHFFRRIWLRFSSQNPISSCLRFSSQNPISSCLRFFQL KLLPGLTRVVDLILRYIGIHFTR" mobile_element 8092982..8094084 /note="source:CACAO_M_S_E37995_F197_scaffold_4 1 1198" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8093722..8094194 /note="source:CACAO_M_E57407_F76_scaffold_9 1036 1501" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(8097713..8100719) /locus_tag="TCM_022852" /note="dbxref CacaoGD:Thecc1EG022852" mRNA complement(join(8097713..8098249,8098705..8098991, 8099933..8100018,8100307..8100428,8100507..8100719)) /locus_tag="TCM_022852" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(join(8098015..8098249,8098705..8098991, 8099933..8100018,8100307..8100428,8100507..8100631)) /locus_tag="TCM_022852" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08427.1" /translation="MGWPPTGRRTPPTPPHWLPNPSIHIGSAHTHSTPPPLTHGCLEK PPVIPLMLDPSIHKDRPTAVFFENEIQTLTQPFSYSIIALMWIAKIIGKSLYVDEATA NGSRPSVAQAMENASNVTIQKHKKMRCRKLAERMEKSVIKGGGLVLSDESQPDESEVR PLSASCMHEGTLGSSDESGFNKENSLVPSHTDVSHANLEVHPMVLYRSKRVPLWDCVR TVSAGIEGPWLARGDFNVILNRTEKLHGATPHGGLMEDFATTLLDCGLLNGGFEGKPY TWTNSHML" mobile_element 8100694..8101446 /note="source:CACAO_M_E23009_F76_scaffold_4 1361 2107" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8101440..8101796 /note="source:CACAO_M_E4368_F316_scaffold_2 4709 5067" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8101795..8102063) /note="source:CACAO_on_SS_E42_scaffold_2 616 884" /mobile_element_type="transposon:TIR/Mutator" mobile_element 8102051..8102785 /note="source:CACAO_M_S_E37995_F197_scaffold_4 4620 5365" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8102526..8102837) /note="source:CACAO_M_E153_F88_scaffold_1 5227 5529" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(8104366..8110308) /locus_tag="TCM_022853" /note="dbxref CacaoGD:Thecc1EG022853" mRNA complement(join(8104366..8104653,8104791..8104923, 8105817..8105948,8106093..8106159,8106448..8106673, 8106831..8106907,8107000..8107065,8107185..8107233, 8107336..8107386,8107475..8107527,8107723..8107777, 8107894..8107982,8108089..8108174,8108270..8108323, 8108524..8108716,8109847..8110308)) /locus_tag="TCM_022853" /product="E2F transcription factor 3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma02g35850.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041291t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033931001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1214t8" mRNA complement(join(8105816..8106159,8106448..8106673, 8106831..8106907,8107000..8107065,8107185..8107233, 8107336..8107386,8107475..8107527,8107723..8107777, 8107894..8107982,8108089..8108174,8108270..8108323, 8108524..8108716,8109847..8110245)) /locus_tag="TCM_022853" /product="E2F transcription factor 3 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma02g35850.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041291t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033931001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1214t5; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1214t8" CDS complement(join(8105857..8105948,8106093..8106159, 8106448..8106673,8106831..8106907,8107000..8107065, 8107185..8107233,8107336..8107386,8107475..8107527, 8107723..8107777,8107894..8107982,8108089..8108174, 8108270..8108323,8108524..8108716,8109847..8110131)) /locus_tag="TCM_022853" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG041291t1" /codon_start=1 /product="E2F transcription factor 3 isoform 1" /protein_id="EOY08428.1" /db_xref="Phytozome:GSVIVT01033931001" /db_xref="TAIR:AT2G36010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FNY0" /translation="MSGGARASARPRPPHPPPPPSAVSSPASAGPSIVPPIRRHLAFA STKPPFVHPDDYHRFSSNNNNNYPNNSLTSASNARGAVADQEVEAIVVRSPQFKRKST VNKNEVESSHWTTSPGVSSISNSLFQTPVSAKGGRLNNRSKASKANKSTPQTPMSNAG SLSPLTPAGSCRYDSSLGLLTKKFINLIKHAEDGMLDLNKAAETLEVQKRRIYDITNV LEGIGLIEKKLKNRIHWKGVDASRPGEADGDVSILQAEIENLSIEENRLDDQIREMQE RLRDLSENENNQRWLFVTEEDIKGIPCFQNETLIAIKAPHGTTLEVPDPDEAVDYSQR RYRIILRSTMGPVDVYLVSQFEEKFEELNGVEPPVRLPLASSSGSNENQVELVNVDST RKEVEPQAQTHQMGSDINASQESVGGMMRIVPLDIDNDADYWLLSDADVSITDMWKTD SGVEWSGVDALHADFGMADVSTPSPQTPAI" CDS complement(join(8106073..8106159,8106448..8106673, 8106831..8106907,8107000..8107065,8107185..8107233, 8107336..8107386,8107475..8107527,8107723..8107777, 8107894..8107982,8108089..8108174,8108270..8108323, 8108524..8108716,8109847..8110131)) /locus_tag="TCM_022853" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG041291t1" /codon_start=1 /product="E2F transcription factor 3 isoform 2" /protein_id="EOY08429.1" /db_xref="Phytozome:GSVIVT01033931001" /db_xref="TAIR:AT2G36010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIN5" /translation="MSGGARASARPRPPHPPPPPSAVSSPASAGPSIVPPIRRHLAFA STKPPFVHPDDYHRFSSNNNNNYPNNSLTSASNARGAVADQEVEAIVVRSPQFKRKST VNKNEVESSHWTTSPGVSSISNSLFQTPVSAKGGRLNNRSKASKANKSTPQTPMSNAG SLSPLTPAGSCRYDSSLGLLTKKFINLIKHAEDGMLDLNKAAETLEVQKRRIYDITNV LEGIGLIEKKLKNRIHWKGVDASRPGEADGDVSILQAEIENLSIEENRLDDQIREMQE RLRDLSENENNQRWLFVTEEDIKGIPCFQNETLIAIKAPHGTTLEVPDPDEAVDYSQR RYRIILRSTMGPVDVYLVSQFEEKFEELNGVEPPVRLPLASSSGSNENQVELVNVDST RKEVEPQAQTHQMGSDINASQESVGGMMRIVPLDIDNDADYWLLSDADVSITDMWKTD CILLKF" mobile_element complement(8113709..8115182) /note="source:CACAO_Mutator_E1018_scaffold_5 2684 4144" /mobile_element_type="transposon:TIR/Mutator" mobile_element 8123564..8124489 /note="source:INTACT641_F282_scaffold_1-int 5681 6652" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8124608..8124760 /note="source:CACAO_M_S_E52027_F3_scaffold_5 6203 6375" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8124797..8127756) /note="source:CACAO_M_E69946_F329_scaffold_9 1281 4237" /mobile_element_type="retrotransposon:LTR/Copia" gene 8130674..8134409 /locus_tag="TCM_022855" /note="dbxref CacaoGD:Thecc1EG022855" mRNA join(8130674..8130934,8131675..8131822,8131891..8131964, 8132521..8133122,8133223..8133324,8133622..8133710, 8133812..8134409) /locus_tag="TCM_022855" /product="NC domain-containing-related-like protein" /inference="similar to AA sequence:Phytozome:POPTR_0006s21980.1" /note="quality class is medium, express is medium, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3572t1" CDS join(8130856..8130934,8131675..8131822,8131891..8131964, 8132521..8133122,8133223..8133324,8133622..8133710, 8133812..8133920) /locus_tag="TCM_022855" /codon_start=1 /product="NC domain-containing-related-like protein" /protein_id="EOY08430.1" /db_xref="Phytozome:POPTR_0006s21980.1" /db_xref="TAIR:AT5G06370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93V51" /translation="MRKGAQLYKNRTPYIHPFLFMDVKLGARLVIILPNPKTSIDFSS QIISNKCRWYNKRGIQEELSKEEQQMGMLTHRINKESLKPGDHVYCWRIGFLYADHGI YVGDDKVIHLLRCCSEGRGSLLDLPLNISMLAQSQPSCPSCTQTKRDGIICSCLNCFL GGRVLRRYEYGVNNAVFIVKVRGGTCTRAVSDSADVAVHRAKYLLDYATNSYKLFMNN SEEFAIYCKTGVALAGYGTPVLKGQAASIPSFLLAACMSAPLHLSKANGLCIAATLFG LYSSLRFILDIRRNGDEVKVIVEDLGIKPRSGLWPVTLLFCFFSMILRYGTIIYLLLH ENVNDGWILLKCHSSEEVGQRKLLFQPLSDREPGEAIVASAFASLPVIALIHELEALR MDLPIARD" gene complement(8135248..8136712) /locus_tag="TCM_022856" /note="dbxref CacaoGD:Thecc1EG022856" mRNA complement(8135248..8136712) /locus_tag="TCM_022856" /product="Mitochondrial transcription termination factor family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s07290.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s07290.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3568t2" CDS complement(8135459..8136460) /locus_tag="TCM_022856" /codon_start=1 /product="Mitochondrial transcription termination factor family protein" /protein_id="EOY08431.1" /db_xref="Phytozome:POPTR_0016s07290.1" /db_xref="TAIR:AT2G36000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HBQ8" /translation="MQDTLPFLSKNNPFPPSLSSLHHHKHHDFPSLSRPRNLHFPTFS SKTITIPLPPKPPKIPEIPSISPPPSSHSDFQEKMLYLDSIGLDFFSLIQHHPPIITT SLNDLKSTVDFLTSFNFSTLELRRILSMCPEILTTNPTSLLPIFTFLFREARVNGSDL KKVINRRPRLLTCNVETQLRPTLYFLQNIGISEVKKHTSLLSCSVENKLIPRIEYFQK MGFSYRQTISMFRRFPQLFNYSVKENYEPKLNYFVVEMGRDLKELKEFPQYLSFSLEN RIKPRHQCCIEKGVCFPLPVLLRTSEVEFRNRLEVCCNSSLPFKGSPLWCTKNCDIE" mobile_element 8139203..8139327 /note="source:CACAO_M_E57329_F88_scaffold_8 255 388" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8139256..8139377) /note="source:INTACT561_F253_scaffold_5-int 4319 4444" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8139378..8142743) /note="source:INTACT561_F253_scaffold_5-int 1387 4404" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8142736..8143433 /note="source:CACAO_M_S_E5285_F300_scaffold_1 17254 17943" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8143364..8143479 /note="source:scaffold_1_CACTA_0008 1415 1530" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8143480..8143760) /note="source:CACAO_M_E58957_F253_scaffold_9 1787 2076" /mobile_element_type="retrotransposon:LTR/Copia" gene 8143872..8149593 /locus_tag="TCM_022857" /note="dbxref CacaoGD:Thecc1EG022857" mRNA join(8143872..8144013,8144634..8144980,8145681..8145755, 8145844..8145925,8146015..8146094,8147213..8147338, 8148636..8148749,8148885..8149016,8149196..8149593) /locus_tag="TCM_022857" /product="2-cysteine peroxiredoxin B" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033933001" /inference="similar to AA sequence:ricco:28324.m000394" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03876t00002" mobile_element complement(8143896..8143944) /note="source:CACAO_M_S_E51603_F76_scaffold_4 260 307" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(8144774..8144980,8145681..8145755,8145844..8145925, 8146015..8146094,8147213..8147338,8148636..8148749, 8148885..8149001) /locus_tag="TCM_022857" /note="dbxref ricco:28324.m000394" /codon_start=1 /product="2-cysteine peroxiredoxin B" /protein_id="EOY08432.1" /db_xref="TAIR:AT5G06290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C5R8" /translation="MACSAASTTTALISSNPRSFSAKSKPISQSLTLPNSFSGVRAPL LSRVARSVSFSRTSHSRKSLVVKASSELPLVGNTAPDFEAEAVFDQEFIKVKLSEYIG KKYVILFFYPLDFTFVCPTEITAFSDRYEEFEKLNTEILGVSIDSVFSHLAWVQTDRK SGGLGDLKYPLISDVTKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGR SVDETMRTLQALQYVQENPDEVCPAGWKPGEKSMKPDPKLSKEYFAAI" mobile_element complement(8153891..8153907) /note="source:CACAO_M_E14113_F106_scaffold_3 13825 13898" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8153908..8153965) /note="source:CACAO_M_S_E90022_F9_scaffold_8 3114 3168" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8153924..8153971 /note="source:CACAO_M_S_E122136_F76_scaffold_10 13663 13709" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(8154051..8158775) /locus_tag="TCM_022858" /note="dbxref CacaoGD:Thecc1EG022858" mRNA complement(join(8154051..8154354,8154625..8154768, 8155658..8155728,8155910..8156009,8156474..8156504, 8157317..8157414,8158519..8158775)) /locus_tag="TCM_022858" /product="Lysine decarboxylase family protein, putative" /inference="alignment:exonerate- protein:2:ricco:28324.m000393" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022168t2" /inference="similar to AA sequence:ricco:28324.m000393" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3585t1" CDS complement(join(8154259..8154354,8154625..8154768, 8155658..8155728,8155910..8156009,8156474..8156504, 8157317..8157414,8158519..8158626)) /locus_tag="TCM_022858" /note="dbxref ricco:28324.m000393; paralog of Thecc1EG022168t2" /codon_start=1 /product="Lysine decarboxylase family protein, putative" /protein_id="EOY08433.1" /db_xref="TAIR:AT5G06300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IQ18" /translation="MEETKSRFKRICVFCGSSSGKKASYQEAAVELGKELVERRIDLV YGGGSVGLMGLVSQAVHDGGRHVLGVIPRTLMPREITGETVGEVRAVSDMHQRKAEMA RQADAFIALPGGYGTLEELLEVITWAQLGIHRKPVGLLNVDGYYNSLLSFIDKAVDEG FISPTARRIIVSAPTAKQLVRQLEDYEPEYDEVTSKLVWDEVDRLSYVPESRVTT" gene 8158874..8202980 /locus_tag="TCM_022859" /note="dbxref CacaoGD:Thecc1EG022859" mRNA join(8158874..8158935,8189732..8190351,8198725..8198913, 8202633..8202980) /locus_tag="TCM_022859" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(8158926..8158935,8189732..8190264) /locus_tag="TCM_022859" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08434.1" /translation="METEKKRERGMEKLVQKPCEVSKGVRGKNVYRGFAAVVTGSMGV PGRDTIMLWSFSRTILPRTTSLYALLAWASSLYLLLLCIITLGTLTLCIVPLCANPLG ITNLMFLPYAHFFGMHYLLRNLLWTSPPFPQPFCVKISWIVLIVSCPCLGPLGPSPLI VVFQGPYNILLSFIALLSTT" mobile_element 8160702..8160751 /note="source:INTACT164_F159_scaffold_7-int 1599 1648" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8161610..8161701 /note="source:INTACT164_F159_scaffold_7-int 2547 2633" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8169151..8171165 /note="source:CACAO_M_E34871_F106_scaffold_5 1 2015" /mobile_element_type="retrotransposon:LTR/Copia" assembly_gap 8179427..8189426 /estimated_length=10000 /gap_type="between scaffolds" mobile_element 8189427..8189869 /note="source:CACAO_M_S_E1495_F60_scaffold_1 10029 10449" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8215556..8218262) /note="source:INTACT594_F265_scaffold_8-int 2714 5433" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8218731..8220699 /note="source:CACAO_M_E34871_F106_scaffold_5 1 2015" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8223387..8223644) /note="source:scaffold_9_CACTA_0937 9661 9910" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8223684..8224269) /note="source:CACAO_M_E42343_F106_scaffold_5 9290 9864" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8224264..8228316 /note="source:CACAO_LINE_E_130_scaffold_5 1 4053" /mobile_element_type="retrotransposon:LINE/L1" mobile_element complement(8228291..8230796) /note="source:CACAO_M_S_E19121_F51_scaffold_3 1 2501" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8230799..8230966 /note="source:CACAO_M_E178_F2_scaffold_1 1355 1522" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8230967..8232514 /note="source:CACAO_M_E3326_F17_scaffold_1 1 1505" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8232453..8232526) /note="source:CACAO_M_S_E89272_F5_scaffold_8 10936 11009" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8232521..8234999 /note="source:CACAO_M_E178_F2_scaffold_1 1514 3975" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8234997..8235176 /note="source:CACAO_M_S_E17777_F2_scaffold_3 611 788" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8235324..8237519 /note="source:CACAO_M_E3007_F143_scaffold_1 1 2192" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8237631..8240447 /note="source:CACAO_M_E34877_F289_scaffold_5 1 2817" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8241837..8241937 /note="source:scaffold_2_CACTA_0262 881 990" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8241933..8243923 /note="source:CACAO_M_E59164_F88_scaffold_9 781 2778" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8243928..8246839 /note="source:CACAO_M_E34878_F86_scaffold_5 1 2912" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8246840..8249272 /note="source:INTACT459_F220_scaffold_4-int 5755 8195" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8249326..8249367 /note="source:INTACT459_F220_scaffold_4-int 123 164" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8250794..8250903) /note="source:INTACT1432F_F101_scaffold_9-int 12198 12308" /mobile_element_type="retrotransposon:LTR/Unclassified" gene 8257646..8260172 /locus_tag="TCM_022864" /note="dbxref CacaoGD:Thecc1EG022864" mRNA join(8257646..8259233,8259975..8260172) /locus_tag="TCM_022864" /product="Eukaryotic aspartyl protease family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:28684.m000037" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041288t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s22110.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:PASA:2:TSA:puevd3b022137t1a2; alternateUTRof:Thecc1EG022864t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc544t2" mRNA join(8257646..8259504,8259954..8260044) /locus_tag="TCM_022864" /product="Eukaryotic aspartyl protease family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:28684.m000037" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041288t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s22110.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3613t2; alternateUTRof:Thecc1EG022864t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc544t2" mRNA join(8257682..8259504,8259975..8260172) /locus_tag="TCM_022864" /product="Eukaryotic aspartyl protease family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:28684.m000037" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041288t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s22110.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc544t2" CDS 8257782..8259200 /locus_tag="TCM_022864" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG041288t1" /codon_start=1 /product="Eukaryotic aspartyl protease family protein, putative isoform 1" /protein_id="EOY08435.1" /db_xref="Phytozome:POPTR_0006s22110.1" /db_xref="TAIR:AT3G52500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93ZE7" /translation="MASFLLLSFFSSLLISTTLTVTTTATASTTIKISLSPFPHPPSF DAYQILNNLATSSVSRAHHLKQPTHKIKAKANTTSSLLKTPLFPHSYGGYTISLGIGT PPQTLTFIMDTGSSLSWFPCTSRYICSQCAFPNVDPKKIPTFSPKLSSSKALVGCKNP KCRWLFGPDVESRCQDCEPASKNCTQNCPPYIIQYGLGSTGGLLLVENLVFSQKTFQD FLVGCSIFSNRQPAGIVGFGRRPESLPSQLGVKKFSYCLVSRRFDDTGVSSNMLLETG SGSGDAKTKGLSYTPFYKNQFASHPIFQEFYYVTIRKILVGDKHVKVPYKYLVPGPDG NGGTIVDSGSTFTFMERAVFELVSKEFEKQMGNYSRAHEVENKSGLAPCVNISGHKSI SFPELIFQFKGGAKMALPLANYFSFLDVNVVCLMVVTDNIIGQGVSGGPAIILGNFQQ QNYYIEYDLANESFGFAKQSCV" CDS 8257782..8259200 /locus_tag="TCM_022864" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG041288t1" /codon_start=1 /product="Eukaryotic aspartyl protease family protein, putative isoform 1" /protein_id="EOY08436.1" /db_xref="Phytozome:POPTR_0006s22110.1" /db_xref="TAIR:AT3G52500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93ZE7" /translation="MASFLLLSFFSSLLISTTLTVTTTATASTTIKISLSPFPHPPSF DAYQILNNLATSSVSRAHHLKQPTHKIKAKANTTSSLLKTPLFPHSYGGYTISLGIGT PPQTLTFIMDTGSSLSWFPCTSRYICSQCAFPNVDPKKIPTFSPKLSSSKALVGCKNP KCRWLFGPDVESRCQDCEPASKNCTQNCPPYIIQYGLGSTGGLLLVENLVFSQKTFQD FLVGCSIFSNRQPAGIVGFGRRPESLPSQLGVKKFSYCLVSRRFDDTGVSSNMLLETG SGSGDAKTKGLSYTPFYKNQFASHPIFQEFYYVTIRKILVGDKHVKVPYKYLVPGPDG NGGTIVDSGSTFTFMERAVFELVSKEFEKQMGNYSRAHEVENKSGLAPCVNISGHKSI SFPELIFQFKGGAKMALPLANYFSFLDVNVVCLMVVTDNIIGQGVSGGPAIILGNFQQ QNYYIEYDLANESFGFAKQSCV" CDS 8257782..8259200 /locus_tag="TCM_022864" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG041288t1" /codon_start=1 /product="Eukaryotic aspartyl protease family protein, putative isoform 1" /protein_id="EOY08437.1" /db_xref="Phytozome:POPTR_0006s22110.1" /db_xref="TAIR:AT3G52500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93ZE7" /translation="MASFLLLSFFSSLLISTTLTVTTTATASTTIKISLSPFPHPPSF DAYQILNNLATSSVSRAHHLKQPTHKIKAKANTTSSLLKTPLFPHSYGGYTISLGIGT PPQTLTFIMDTGSSLSWFPCTSRYICSQCAFPNVDPKKIPTFSPKLSSSKALVGCKNP KCRWLFGPDVESRCQDCEPASKNCTQNCPPYIIQYGLGSTGGLLLVENLVFSQKTFQD FLVGCSIFSNRQPAGIVGFGRRPESLPSQLGVKKFSYCLVSRRFDDTGVSSNMLLETG SGSGDAKTKGLSYTPFYKNQFASHPIFQEFYYVTIRKILVGDKHVKVPYKYLVPGPDG NGGTIVDSGSTFTFMERAVFELVSKEFEKQMGNYSRAHEVENKSGLAPCVNISGHKSI SFPELIFQFKGGAKMALPLANYFSFLDVNVVCLMVVTDNIIGQGVSGGPAIILGNFQQ QNYYIEYDLANESFGFAKQSCV" mobile_element complement(8262410..8265097) /note="source:CACAO_M_S_E109669_F345_scaffold_9 1 2665" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8265927..8266016) /note="source:scaffold_2_CACTA_0262 646 733" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8268385..8271490 /note="source:CACAO_M_S_E52628_F51_scaffold_5 1 3106" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8274558..8274710 /note="source:CACAO_on_E203_scaffold_7 2 154" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 8274702..8275378 /note="source:CACAO_M_E5899_F5_scaffold_2 19652 20325" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8275628..8277246 /note="source:CACAO_M_E49559_F88_scaffold_7 7407 9075" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8277270..8277517 /note="source:CACAO_on_E203_scaffold_7 141 372" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 8277596..8277836 /note="source:CACAO_on_E203_scaffold_7 5638 5871" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 8277872..8287509 /locus_tag="TCM_022866" /note="dbxref CacaoGD:Thecc1EG022866" mRNA join(8277872..8278485,8278810..8278861,8279187..8279263, 8279353..8279486,8279744..8279840,8280052..8280109, 8281161..8281269,8281376..8281496,8281597..8281783, 8282464..8282810,8283395..8283483,8283608..8283663, 8283891..8283968,8284184..8284324,8284589..8284694, 8285052..8285126,8285281..8285330,8286005..8286155, 8286249..8286415,8286818..8287509) /locus_tag="TCM_022866" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033943001" /inference="similar to AA sequence:Phytozome:GSVIVT01033943001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3615t1" mRNA join(8278304..8278485,8278810..8278861,8279187..8279263, 8279353..8279486,8279744..8279840,8280052..8280109, 8281161..8281269,8281376..8281496,8281597..8281783, 8282464..8282810,8283395..8283483,8283608..8283663, 8283891..8283968,8284184..8284324,8284589..8284694, 8285281..8285330,8286005..8286156,8286249..8286436) /locus_tag="TCM_022866" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033943001" /inference="similar to AA sequence:Phytozome:GSVIVT01033943001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3615t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3615t1; inference alignment:Newbler:10:TSA:cgbaL_g02431t00001" CDS join(8278433..8278485,8278810..8278861,8279187..8279263, 8279353..8279486,8279744..8279840,8280052..8280109, 8281161..8281269,8281376..8281496,8281597..8281783, 8282464..8282810,8283395..8283483,8283608..8283663, 8283891..8283968,8284184..8284324,8284589..8284694, 8285052..8285126,8285281..8285330,8286005..8286155, 8286249..8286415,8286818..8287060) /locus_tag="TCM_022866" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY08438.1" /db_xref="Phytozome:GSVIVT01033943001" /db_xref="TAIR:AT3G28430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HBQ4" /translation="MWRSLWRSIDRFSLQHFKYVITELQQIKVVNKQNREAVIDLLQS IVEIVTYGDRQDPLIFECFMECQVLAEFVRVLKISSSSRIEAPLLQYLSIMIQNMDSE HATYYCLSNDYINNIIAHQYNFDAGDLALYYVSFLRAVSSKINRDTLCLLVKVHGDAV VSFPLYSEALKFAQHGEKMIQTAIRALTLNIYNVSDDMVYKFVTTPPASKYFSDLVSS LREQYLHLDALIHSTEEKCSHQKKKDIFMETDKIIDDLYYFKDILSVGEPRLSRVVTQ NLLRLLIFPLLLPLLQLENKGSYNISVVTSLYIVSHLLQVVGGKHLINAVAGLLLYHY ITSSQGDATNGDIAGSTSDPSALLCSLNDINIKESSGPGAEDAEDVNINYLLEHLNKH TTSNSHFDGTPTKDNMCIERIGIFAYIFSDNHSISLASLFLLLTLAENKDLEHFPASL IGISQSQDLTFTCSQNNCESAFPTVDGSIIVRLLPQILKALLKVLASQPPISPSIQWN IGWFLRKLLLCQGNMLTDDNIHLFNTSYKQSRECLQKELDGCWFDHIPDTIRHELRSC RKALEEKSEAKDPLFILELAICQQTLDCSSTSYFAWQRMVDAVKVFVLHLQLKALIFT GGLLEKPSLKSLSNSDPGKTYSTDISSASFGSEVSLGSGIPCRIAFSYAGVRDIYLIP VARGISGKLILAEKHPFRSQRGVVIAISPLAGLSPKIDDDHPTWLHLRIREFDPKFIK AKGNQSKVSNPADDGRWTLGFPSAKACETARLLILEEACKQRSFVESILAPLLQDD" CDS join(8278433..8278485,8278810..8278861,8279187..8279263, 8279353..8279486,8279744..8279840,8280052..8280109, 8281161..8281269,8281376..8281496,8281597..8281783, 8282464..8282810,8283395..8283483,8283608..8283663, 8283891..8283968,8284184..8284324,8284589..8284694, 8285281..8285330,8286005..8286156,8286249..8286267) /locus_tag="TCM_022866" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY08439.1" /db_xref="Phytozome:GSVIVT01033943001" /db_xref="TAIR:AT3G28430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HBQ4" /translation="MWRSLWRSIDRFSLQHFKYVITELQQIKVVNKQNREAVIDLLQS IVEIVTYGDRQDPLIFECFMECQVLAEFVRVLKISSSSRIEAPLLQYLSIMIQNMDSE HATYYCLSNDYINNIIAHQYNFDAGDLALYYVSFLRAVSSKINRDTLCLLVKVHGDAV VSFPLYSEALKFAQHGEKMIQTAIRALTLNIYNVSDDMVYKFVTTPPASKYFSDLVSS LREQYLHLDALIHSTEEKCSHQKKKDIFMETDKIIDDLYYFKDILSVGEPRLSRVVTQ NLLRLLIFPLLLPLLQLENKGSYNISVVTSLYIVSHLLQVVGGKHLINAVAGLLLYHY ITSSQGDATNGDIAGSTSDPSALLCSLNDINIKESSGPGAEDAEDVNINYLLEHLNKH TTSNSHFDGTPTKDNMCIERIGIFAYIFSDNHSISLASLFLLLTLAENKDLEHFPASL IGISQSQDLTFTCSQNNCESAFPTVDGSIIVRLLPQILKALLKVLASQPPISPSIQWN IGWFLRKLLLCQGNMLTDDNIHLFNTSYKQSRECLQKELDGCWFDHIPDTIRHELRSC RKGSSTSYFAWQRMVDAVKVFVLHLQLKALIFTGGLLEKPSLKSLSNSDPGKTYSTDI SSASFGSEVSLGIRNPL" mobile_element 8290709..8290809 /note="source:scaffold_5_CACTA_0585 5670 5772" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8291604..8291640) /note="source:scaffold_5_CACTA_0610 5712 5748" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8295159..8295199) /note="source:CACAO_M_E14347_F12_scaffold_3 16520 16562" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8295214..8295258) /note="source:scaffold_5_CACTA_0607 11984 12029" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8297439..8297513) /note="source:CACAO_M_E12463_F12_scaffold_3 4571 4714" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8298620..8298703) /note="source:INTACT1404F_F12_scaffold_9-int 6892 6980" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8299441..8299506 /note="source:scaffold_5_CACTA_0607 14001 14062" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8301337..8301411 /note="source:INTACT170_F12_scaffold_5-int 1179 1253" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8305207..8308110 /note="source:CACAO_M_E34883_F172_scaffold_5 1 2904" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8312117..8312163 /note="source:scaffold_5_CACTA_0585 6310 6356" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8313097..8315774 /note="source:scaffold_1_CACTA_0016 2874 5501" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8318496..8318775 /note="source:scaffold_1_CACTA_0016 13519 13819" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8318778..8319432) /note="source:CACAO_M_S_E109853_F60_scaffold_9 6567 7228" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8319462..8321453) /note="source:CACAO_M_S_E99244_F4_scaffold_9 9287 11217" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8321473..8325045) /note="source:CACAO_M_S_E109853_F60_scaffold_9 6509 10094" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8324098..8325214 /note="source:CACAO_M_E24592_F195_scaffold_4 19182 20299" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8324335..8325384 /note="source:CACAO_M_S_E99244_F4_scaffold_9 3856 4910" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8325381..8326309) /note="source:CACAO_M_S_E109853_F60_scaffold_9 4818 5745" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8326308..8327034 /note="source:scaffold_1_CACTA_0016 13816 14539" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8327055..8329690 /note="source:CACAO_M_E69938_F9_scaffold_9 13 2611" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8330253..8331557 /note="source:CACAO_M_E69760_F9_scaffold_9 6641 7563" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8331554..8333407 /note="source:CACAO_M_E69760_F9_scaffold_9 11545 13383" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8335225..8337627) /note="source:scaffold_5_CACTA_0585 11960 14368" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8337651..8337806) /note="source:CACAO_M_E870_F22_scaffold_1 1366 1511" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8342415..8353009 /note="source:INTACT107_F12_scaffold_5-int 1 10595" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8353760..8353833 /note="source:INTACT261_F189_scaffold_2-int 1233 1313" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8354001..8354054) /note="source:INTACT1818F_F49_scaffold_11-int 19870 19925" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8362124..8365048 /note="source:CACAO_M_E34892_F86_scaffold_5 1 2925" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8367073..8367524 /note="source:INTACT135F_F90_scaffold_2-int 13545 14005" /mobile_element_type="retrotransposon:LTR/Copia" gene 8369366..8373690 /locus_tag="TCM_022872" /note="dbxref CacaoGD:Thecc1EG022872" mRNA join(8369366..8371126,8371665..8371899,8372023..8373690) /locus_tag="TCM_022872" /product="Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s22090.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044328t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s22090.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc156t1" CDS join(8369931..8371126,8371665..8371899,8372023..8373165) /locus_tag="TCM_022872" /note="paralog of Thecc1EG044328t1" /codon_start=1 /product="Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein" /protein_id="EOY08440.1" /db_xref="Phytozome:POPTR_0006s22090.1" /db_xref="TAIR:AT3G52490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HBQ3" /translation="MRAGGCTVQQALTNEAANVVKQAVTLARRRGHAQVTPLHVANTM LSASTGLLRTACIQSHSHPLQCRALELCFNVALNRLPASSSSPMLGGHSQYPSISNAL VAAFKRAQAHQRRGSIENQQQPLLAVKIELEQLIISILDDPSVSRVMREAGFSSTQVK SNVEQAVSLEICSQNAPSVNSKSKESSNGNLVLSQSPSTAAQVGSKVGTPRGPDPIRN EDVMFVIENLMNKKSRSFVVIGECISSTEGVVRAVIDKVNKGDVPESLRDVKFKNLSF SSFGHLNRVEVEQKIEELKSHVRNSLGTGIVFNLGDLKWAVEYRASSSEQGRGYYCPV EHMIMELGKLVCNIGESRRFRVIGIATFQTYMRCKSCHPSLETVWGLHPLTIPAGSLR LSLITDSDLQSQSTSKKVENGSSWILLDDGEEKQLTCCADCSAKFENEVRSLQSSACN SESTTSSLPPWFQPYKDENKGLGSNDKDSAPVRELRKKWNSFCNSVHKQPYSSERTHT FSSISPPSSTSCFSHDQQYSHLHPPHHDWPVVEPRQSWKDHQFWISETVDKIVEPTGL RLYIPEHKDPKQLLSSNPNSTPNSASSSDVMEMDYVHKFKELNAENLTTLCTALEKKV PWQKDIISEIVSTILKCRSGMLRRKGKLRDGESKEETWLFFQGVDVQAKEKIARELAR LVFGSQTNFVTIALSSFSSTRADSTDDSRNKRSRDEQSCSYIERFAEAVLSNPHRVFF IEDVEQADYCSQMGFKRAIETGRITNANGQEAILSDAIIILSCESFSSRSRACSPPSK QKFDGSEEEKVAALEETSPCVSLDLNICIDDDSIEEQSIDDIGLLESVDRRIIFKIQE L" gene complement(8377106..8399045) /locus_tag="TCM_022873" /note="dbxref CacaoGD:Thecc1EG022873" mRNA complement(join(8377106..8378646,8379157..8379244, 8379376..8379494,8379658..8380399,8381538..8381610, 8383369..8383411,8387814..8388162,8398958..8399045)) /locus_tag="TCM_022873" /product="Uncharacterized protein" /inference="similar to AA sequence:frave:gene20294" /note="quality class is weak, express is weak, homology is ortholog weak, intron is none, protein is complete; weak similarity to Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" CDS complement(join(8378048..8378646,8379157..8379244, 8379376..8379494,8379658..8380399,8381538..8381610, 8383369..8383411,8387814..8387997)) /locus_tag="TCM_022873" /note="dbxref frave:gene20294; weak similarity to Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08441.1" /db_xref="TAIR:AT4G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B1E1" /translation="MLHTKVKASIPDVTCQDQSFSTRCYTPKPKLQHRMLHAKTKALA SNITRQSFLLPTDVTRQGFAKHYCLKQDPRAWFLNGLNESFFALRPQIISMEPFPKNT TFSFELVHVDLWGPYIVPTIKGQRYFLTLVDDCSRFTWIFLLRNKLDVSYCSRFTWIF LLRNKLDVSCILPSFYQYAKNQFSTSIKCIDHGGEFNLTGFYEKYGIIHQLSCVEASQ QNGVVERKHQHVLVVARALVFQTSLPLSFWGEAILTATHILNRIPTKGLLDKSPYKLL YSKIPSYEYLRVFGSLCFVSSLTQNRKKFDKRAIKCVFLRYPNGIKRYKVLDISAKKF IISRNVFFHLSHYKFTDFAHTSSNSTTKNSRKSVAVQNDLPIQNALLFLHLGRTFTTS LSQIYEPITYKQAINYSHWKEAMQSNKEFIALLVYVDNIVIASNTTQAVDRVKKYLSS QFKLRDLRAVKYFLGLEITRSSKGILICQRKYTLDLLEKYGMLGTKLVTTLIDYSHKL SKYSDSKEIVDLTGYRQLVGKLLYLTFTRLDISYAAQVLSHFMEKTKHDHLSTTYRVL KYLKAASSQGILMKSDSNLVVSTYSNSGWVGCIDIRRPVIGYCVFAGDL" mobile_element complement(8384664..8384794) /note="source:INTACT264_F12_scaffold_6-int 9190 9273" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8384681..8384751 /note="source:INTACT193_F12_scaffold_1-int 9695 9765" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8397306..8400191) /note="source:CACAO_on_E565_scaffold_5 3060 5929" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(8400072..8400208) /note="source:INTACT407F_F356_scaffold_4-int 2140 2277" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8404328..8404385 /note="source:INTACT135F_F90_scaffold_2-int 13941 13998" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8404468..8405749) /note="source:INTACT135F_F90_scaffold_2-int 12870 13952" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8405757..8406086) /note="source:scaffold_1_CACTA_0011 6518 6855" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8407005..8407055) /note="source:CACAO_M_E13038_F22_scaffold_3 12825 12875" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8407098..8407489) /note="source:INTACT262_F12_scaffold_3-int 11162 11552" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8407525..8407666 /note="source:INTACT39F_F22_scaffold_1-int 5451 5593" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8407659..8409111) /note="source:INTACT262_F12_scaffold_3-int 8590 10096" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8409102..8409297) /note="source:CACAO_M_E65323_F12_scaffold_9 7716 7915" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8409277..8414791 /note="source:INTACT601_F12_scaffold_10-int 1150 10188" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 8419643..8420672 /locus_tag="TCM_022876" /note="dbxref CacaoGD:Thecc1EG022876" mRNA 8419643..8420672 /locus_tag="TCM_022876" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033946001" /inference="similar to AA sequence:Phytozome:GSVIVT01033946001" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.36 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3658t2" CDS 8419807..8420514 /locus_tag="TCM_022876" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08442.1" /db_xref="Phytozome:GSVIVT01033946001" /translation="MNASTKLEIALIVVFATCLLALIIELVYVLWRKRRFRQRSIVSG GNGSVDSAFSNSPFYAAPSKELLYFFCWKNQPARVEPSSGVVSPSPTEAPTASDSEAA TVEADDDELAKWQASYGPVRILYTIKEEEREGADSVENSADQTEVKSEKRVCLRDRFS GPVEVADDVAVVVDVEEATPFSTPCASPPYFTPSPSPGRDVGISILSPENDDVSCPDG DVLTDREVGFASLRIEG" mobile_element complement(8421345..8422433) /note="source:CACAO_M_E59600_F12_scaffold_9 2964 4060" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8422534..8424157 /note="source:CACAO_M_S_E119615_F3_scaffold_9 5546 7176" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8426676..8426881 /note="source:INTACT407F_F356_scaffold_4-int 13954 14158" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8426870..8426915 /note="source:CACAO_M_S_E119615_F3_scaffold_9 13544 13598" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8426916..8432468) /note="source:CACAO_M_E12537_F13_scaffold_3 4788 10340" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8434779..8434853) /note="source:CACAO_Mutator_E206_scaffold_1 10626 10700" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(8434867..8434957) /note="source:INTACT563_F255_scaffold_10-int 7427 7518" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8435523..8436161 /note="source:scaffold_9_CACTA_0931 1 644" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8436122..8436179 /note="source:INTACT199_F5_scaffold_6-int 10261 10317" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(8437633..8440975) /locus_tag="TCM_022879" /note="dbxref CacaoGD:Thecc1EG022879" mRNA complement(join(8437633..8438220,8438485..8438596, 8438982..8439140,8439324..8439416,8440908..8440975)) /locus_tag="TCM_022879" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(join(8438024..8438220,8438485..8438596, 8438982..8439140,8439324..8439416,8440908..8440967)) /locus_tag="TCM_022879" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08443.1" /translation="MEKNIPLIMLSFVEPRIYNKMAKTRTEQENAKALFCVLGSSEAS TSALTSTLWFAIGNAKAWFLKCKFCLMIALKFDSMQAVISNPYKAILERIHERYWEAG NQFWTLEVILEIQSWFGSRHQYENVNPRMLKWHCEEMPVEFGPKQRKKIMEHKEKRVR GAVKQRRITDEEVDTYLTALKASIVPKAYAAQSLDDDQMCNLILRP" mobile_element 8441028..8441321 /note="source:CACAO_M_S_E4911_F76_scaffold_1 1 297" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8441704..8441869 /note="source:CACAO_M_S_E66657_F76_scaffold_5 3995 4195" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8441889..8443620) /note="source:CACAO_M_E42641_F14_scaffold_5 10938 12672" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8443619..8444599 /note="source:CACAO_M_E59221_F15_scaffold_9 7987 8966" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8444882..8446722) /note="source:CACAO_M_E12376_F15_scaffold_3 1 1855" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8446723..8446819 /note="source:CACAO_M_S_E146091_F272_scaffold_11 5987 6083" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8446732..8447737) /note="source:CACAO_M_E84179_F14_scaffold_10 6999 7965" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8447767..8450434 /note="source:CACAO_M_S_E66657_F76_scaffold_5 4172 6115" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8450441..8450545) /note="source:CACAO_M_E70891_F369_scaffold_10 12322 12421" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8450956..8452091) /note="source:CACAO_M_E52239_F256_scaffold_7 20574 21742" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8451662..8452919 /note="source:INTACT265_F12_scaffold_7-int 8627 9831" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8452922..8453912 /note="source:CACAO_M_S_E66657_F76_scaffold_5 14585 15581" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8453920..8454380 /note="source:CACAO_M_S_E66657_F76_scaffold_5 8051 8525" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8457678..8457780 /note="source:CACAO_M_E13604_F90_scaffold_3 373 465" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8465507..8466294 /note="source:CACAO_M_E49857_F85_scaffold_7 1 822" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8467547..8468244) /note="source:INTACT646F_F95_scaffold_5-int 6416 7114" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8468623..8468985 /note="source:CACAO_M_E49857_F85_scaffold_7 23534 23879" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8471499..8471559) /note="source:CACAO_M_E84368_F4_scaffold_10 6078 6138" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8471560..8472031 /note="source:CACAO_M_E58620_F277_scaffold_9 1 475" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8472277..8481031 /note="source:INTACT155_F44_scaffold_4-int 392 9173" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8473184..8481032) /note="source:CACAO_M_E69228_F89_scaffold_9 1810 9728" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8481033..8481163 /note="source:CACAO_M_S_E144426_F33_scaffold_10 1 128" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8481146..8483877 /note="source:CACAO_M_S_E17000_F33_scaffold_3 199 2934" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8483878..8485691 /note="source:CACAO_M_S_E1499_F277_scaffold_1 1194 3003" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8485692..8487261) /note="source:CACAO_M_E84368_F4_scaffold_10 4506 6082" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(8489684..8490720) /locus_tag="TCM_022885" /note="dbxref CacaoGD:Thecc1EG022885" mRNA complement(8489684..8490720) /locus_tag="TCM_022885" /product="Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family, putative" /inference="alignment:exonerate- protein:2:ricco:29439.m000217" /inference="similar to AA sequence:frave:gene15289" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4228t1" CDS complement(8489918..8490598) /locus_tag="TCM_022885" /note="dbxref frave:gene15289" /codon_start=1 /product="Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family, putative" /protein_id="EOY08444.1" /db_xref="TAIR:AT2G35980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HBQ1" /translation="MAEKEAQLNGAYYGPSIPPPTRHYHRPGRGSGCGCGCCLLKLLF NIIITAVVVIGLAVLIFWLIFRPNKVKFHVTDASLTEFNFTTNNTLHYNLGVNITVRN PNKRIGIYYDRIEARAYYEDQRFNTLTLTPFYQGHKNTSFLNPVFSGQNLVVLGAEET SKFNEEKTSGIYSIDVKLYLRIRFKVGKVKTGRFKPKISCDLKVPLSSADGSLAGAPE TTRCDWDF" gene 8491088..8498942 /locus_tag="TCM_022886" /note="dbxref CacaoGD:Thecc1EG022886" mRNA join(8491088..8491440,8495199..8495889,8498833..8498942) /locus_tag="TCM_022886" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.18 coverage" CDS join(8491224..8491440,8495199..8495413) /locus_tag="TCM_022886" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08445.1" /translation="MKMINFVRDQSNNRKFRLVWLEAQRQQDTNKTNPTFGEEISSCS WAANSRSGNGSDFGIDIQRTIAFLKNKKEFRFXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXLQMGSSSTGLQRSPPIRPGPKGPAALVFWFGLE" gene complement(8491563..8507252) /locus_tag="TCM_022887" /note="dbxref CacaoGD:Thecc1EG022887" mRNA complement(join(8491563..8491844,8504920..8505290, 8505372..8505718,8505921..8506107,8506699..8506724, 8507088..8507252)) /locus_tag="TCM_022887" /product="Gag-pol polyprotein-like protein" /inference="alignment:exonerate- protein:2:ricco:47194.m000038.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005914t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.23 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc7Loc2701t1_G4" mobile_element 8492080..8494294 /note="source:CACAO_M_E42395_F3_scaffold_5 1 2253" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8496146..8496277) /note="source:CACAO_M_S_E119191_F3_scaffold_9 9439 9568" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8496332..8498650 /note="source:CACAO_M_E12058_F3_scaffold_2 2254 4554" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8498643..8498794) /note="source:CACAO_M_S_E119191_F3_scaffold_9 284 429" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8500399..8500480 /note="source:CACAO_M_E42395_F3_scaffold_5 1419 1501" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8500481..8502635 /note="source:CACAO_M_E34910_F19_scaffold_5 1 2155" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8503607..8506544 /note="source:CACAO_M_E34910_F19_scaffold_5 2156 5093" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(8504920..8505290,8505372..8505718, 8505921..8506107,8506699..8506708)) /locus_tag="TCM_022887" /note="paralog of Thecc1EG005914t1" /codon_start=1 /product="Gag-pol polyprotein-like protein" /protein_id="EOY08446.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E7BQD4" /translation="MLHWFSTLPRLVIHFSEVFNLPTIGVFYNAQVSLQRLDISLVSE REDYYSLHRFRFAVEFQYSLFGSSDEENDTNLFHQNSSSNEEVPIRRLRTAAARDLGI KVNILEFEGRLHPDDFLDWLYTVEKVFELKDIPDEKRVKLVAIKLKKHASIWWESLKR QREREGRNKIRTWDKMRRELKQYTMEFEQLHQKCDVHEPKEQTVARYLRGLNVEIADV VQLQPYWNLNDVIRLALKVEKQRSRKRSMRSSRQQESTSNNGSQSSITIPPPKVNSSK TASNNDKETTCETLSSSIKRRYCTEWYN" mobile_element 8506545..8506647 /note="source:INTACT607_F3_scaffold_4-int 13582 13685" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8506594..8506671) /note="source:CACAO_M_S_E17060_F3_scaffold_3 152 227" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8511525..8512298) /note="source:CACAO_on_S_E390_scaffold_9 14210 14961" /mobile_element_type="transposon:TIR/Mutator" mobile_element 8512399..8520008 /note="source:CACAO_M_S_E99477_F254_scaffold_9 901 15034" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8518823..8521933) /note="source:CACAO_M_S_E88476_F254_scaffold_7 1 3272" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8521782..8521952 /note="source:INTACT139F_F15_scaffold_2-int 2771 2946" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8522136..8524114 /note="source:INTACT591_F264_scaffold_1-int 1 1930" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 8523248..8530452 /locus_tag="TCM_022890" /note="dbxref CacaoGD:Thecc1EG022890" mRNA join(8523248..8523381,8528172..8528235,8528320..8528358, 8528443..8528685,8530183..8530452) /locus_tag="TCM_022890" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.10 coverage" mobile_element complement(8526061..8527286) /note="source:CACAO_M_E9395_F12_scaffold_2 23010 23874" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(8528190..8528235,8528320..8528358,8528443..8528567) /locus_tag="TCM_022890" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08447.1" /translation="MHGYEILLSPSLPPSPNVADTSVRSSFPDYGHVYINIANICAPY TNNVMYEIMTMAREPIRTPDDADNV" mobile_element complement(8528735..8528853) /note="source:CACAO_M_E1841_F5_scaffold_1 22971 23079" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(8530956..8533904) /locus_tag="TCM_022891" /note="dbxref CacaoGD:Thecc1EG022891" mRNA complement(join(8530956..8532691,8533315..8533904)) /locus_tag="TCM_022891" /product="NDR1/HIN1-like 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s07220.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041287t1" /inference="similar to AA sequence:ricco:29439.m000218" /note="quality class is strong, express is medium, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.44 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4726t1" CDS complement(8531651..8532280) /locus_tag="TCM_022891" /note="dbxref ricco:29439.m000218; paralog of Thecc1EG041287t1" /codon_start=1 /product="NDR1/HIN1-like 1" /protein_id="EOY08448.1" /db_xref="TAIR:AT3G11660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T2S2" /translation="MSAKDCGNHGKSRRKLFKRIIACILIFNLIVLITILLIWAILRP SKPKFILQDTTVFAFNASTPNFLTSNFQVTVSSRNPNDKIGIYYDRLDIYATYRNQQI TLRTAIPPTYQGHKEVNVWSPFIFGNMVPIAPDFFMALNSEQAAGSVFLMIKIDGRVR WKVGTFVSGRYHLYVRCPAYITFGSKSNGVIVGENAIKLQLVSRCSVSV" gene 8533347..8546901 /locus_tag="TCM_022892" /note="dbxref CacaoGD:Thecc1EG022892" mRNA join(8533347..8533939,8539671..8539845,8540705..8540860, 8544949..8545096,8546779..8546901) /locus_tag="TCM_022892" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.45 coverage" CDS join(8539688..8539845,8540705..8540783) /locus_tag="TCM_022892" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08449.1" /translation="MWSIWPFYIINHDKQLDFKEERETGEMQKGICHSKGAKLAESTG CIAMSIFDGTLKAQPLKTATQAIVINLKLLQLTT" mobile_element 8542960..8543075 /note="source:INTACT584_F15_scaffold_3-int 13138 13253" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8542993..8543071) /note="source:INTACT296_F13_scaffold_9-int 13162 13242" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(8547109..8553073) /locus_tag="TCM_022893" /note="dbxref CacaoGD:Thecc1EG022893" mRNA complement(join(8547109..8547146,8552432..8553073)) /locus_tag="TCM_022893" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.13 coverage" mobile_element 8547193..8547753 /note="source:CACAO_M_E1841_F5_scaffold_1 8335 8852" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8547901..8547964 /note="source:INTACT584_F15_scaffold_3-int 13182 13246" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8548036..8549114 /note="source:CACAO_M_E1841_F5_scaffold_1 21987 23081" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8549003..8551645) /note="source:CACAO_M_S_E65716_F44_scaffold_5 7128 9119" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8551641..8552352 /note="source:CACAO_M_E1841_F5_scaffold_1 25793 26457" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(8552533..8552862) /locus_tag="TCM_022893" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08450.1" /translation="MENVQRGGKKFMRIRGTKFDKFKNRWSKNKRGRNRKKTEAIVNE SPIDGDFENKDEVEITWVVAKQVGFTYEGKEDELLTDIDMEAAGIVYLKGQKKEEEKY YIDVRNR" mobile_element 8554920..8555011 /note="source:CACAO_M_E22186_F143_scaffold_3 9951 10005" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8554935..8555001) /note="source:INTACT296_F13_scaffold_9-int 13178 13247" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8568171..8568331) /note="source:INTACT39F_F22_scaffold_1-int 13719 13874" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8570460..8571899) /note="source:INTACT296_F13_scaffold_9-int 13018 14451" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8571902..8574822 /note="source:CACAO_M_E34925_F170_scaffold_5 1 2921" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8574705..8574835) /note="source:CACAO_M_E9661_F15_scaffold_2 7733 7866" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8574826..8576115 /note="source:CACAO_M_S_E64832_F14_scaffold_5 2305 4311" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8576112..8576666 /note="source:CACAO_M_E69760_F9_scaffold_9 12364 12883" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8576827..8578589 /note="source:CACAO_M_E69760_F9_scaffold_9 995 2795" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(8576960..8590283) /locus_tag="TCM_022897" /note="dbxref CacaoGD:Thecc1EG022897" mRNA complement(join(8576960..8576986,8584810..8585310, 8590280..8590283)) /locus_tag="TCM_022897" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033536t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" mobile_element 8580191..8580341 /note="source:CACAO_M_E52278_F17_scaffold_7 2991 3153" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8582463..8583936 /note="source:CACAO_M_E3248_F5_scaffold_1 1646 3090" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(8584817..8585029) /locus_tag="TCM_022897" /note="paralog of Thecc1EG033536t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08451.1" /translation="MDPLPRKNRSRVLLHRIPIAMAISTILVDIGESSGRNRSHLRVS LHRTTCGLATYTYHRSWPSPCLTARR" mobile_element 8592707..8595329 /note="source:CACAO_M_E59641_F12_scaffold_9 10414 13005" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8595378..8595454 /note="source:INTACT34F_F12_scaffold_1-int 10585 10662" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8595668..8598602) /note="source:CACAO_M_E3248_F5_scaffold_1 1653 4497" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8599790..8601892) /note="source:CACAO_M_E45234_F22_scaffold_6 7951 10083" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8604734..8607270) /note="source:CACAO_M_E45234_F22_scaffold_6 5409 7963" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8607271..8609792 /note="source:CACAO_M_S_E64832_F14_scaffold_5 10135 12677" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8609471..8615105) /note="source:CACAO_M_S_E109853_F60_scaffold_9 6509 12162" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8615698..8615757) /note="source:CACAO_M_E33213_F12_scaffold_4 9244 9307" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8615712..8615875 /note="source:CACAO_M_S_E64832_F14_scaffold_5 11194 11358" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8615876..8618814 /note="source:CACAO_M_E34938_F33_scaffold_5 1 2939" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8618815..8620144 /note="source:CACAO_M_S_E64832_F14_scaffold_5 11356 12675" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8620058..8620153) /note="source:CACAO_M_E32900_F13_scaffold_4 2438 2532" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8620145..8625491) /note="source:INTACT292_F22_scaffold_5-int 1 5438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8627696..8628042 /note="source:scaffold_1_CACTA_0011 7521 7864" /mobile_element_type="transposon:TIR/CACTA" gene 8630320..8636505 /locus_tag="TCM_022902" /note="dbxref CacaoGD:Thecc1EG022902" mRNA join(8630320..8630642,8633703..8634514,8634593..8634804, 8635111..8635198,8635927..8636505) /locus_tag="TCM_022902" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(8630367..8630642,8633703..8634514,8634593..8634804, 8635111..8635198,8635927..8635954) /locus_tag="TCM_022902" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08452.1" /translation="MPNFETEKESSIVPIWISFPNLKAHLFEKLALLLIVKAIGNPLY VDKATTNGTWPSVARFCIEYDCLKAPLNSVWIVVSKRGLEDMSGGYLHAIMEEDLEEQ NQAPKQGQIEVSSAYANEIIFSSKSGDAAKCREGVVVEIHGDVTDESSSPQKEVTGCH REMEEEQSTGAESMHVISELNGREKLAIFFANVQTEKGEVQEHFHEQGKFTQTGYDAK ERGRTEPEGGKPQMAPAIGNFEVQDKRDKQKSASGTSIKMATLASDGTSHAWRQEGAG INFNNNRLEPLTQAATRLHGDEQTRTTMRELPLGSAASGPNVLLEVHVQGKKGQPCNG MGERDSDWIAIAEHDGTLQLKTLHEGAVRCEMSTVADGIMAQDSMQARIGGKEAKIGA ARNQKKKKIKIKQKLVDKAASSVEKIENGSGGQNVTVDMAEDKAVDRWDNDEASDEDA ISVNFAASWECEKIPPSGDGT" mobile_element 8630642..8633315 /note="source:INTACT24F_F12_scaffold_1-int 1253 3935" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8633239..8633329) /note="source:CACAO_M_E22348_F13_scaffold_3 3986 4078" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8637842..8646055 /note="source:CACAO_M_S_E52697_F28_scaffold_5 1 8214" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(8645621..8659755) /locus_tag="TCM_022904" /note="dbxref CacaoGD:Thecc1EG022904" mRNA complement(join(8645621..8645661,8649867..8650011, 8651904..8653297,8659589..8659755)) /locus_tag="TCM_022904" /product="Hydroxyproline-rich glycoprotein family protein, putative" /inference="alignment:exonerate- protein:2:ricco:29439.m000219" /inference="similar to AA sequence:ricco:29439.m000219" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.30 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3618t1" mobile_element 8646821..8649419 /note="source:CACAO_M_E34948_F144_scaffold_5 1 2599" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(8652340..8653251) /locus_tag="TCM_022904" /note="dbxref ricco:29439.m000219" /codon_start=1 /product="Hydroxyproline-rich glycoprotein family protein, putative" /protein_id="EOY08453.1" /db_xref="TAIR:AT3G52460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T2S3" /translation="MSSHSEDHQNKRDQPNHHSSPSSDTNNNHQPAAPPPSQPPPPPQ PPNNQSPAHGYPPAMRFPPQMVYTHGGPYPAYPPPPHGCNQYPYAQLPPGAPYYNQGY ASPQNDRCSGFARGIIAAMFVLIVLTCLSSLITWVVLRPEIPVFHVDNMSVSNFNTST PFMATWDTNLTLENPNHKLRLYLDKIVGAMFYDDEDSLGSSWLNPIFMETKTKTTMNA IISTNGSAQNAVPIWLTQEMSKDRATGSLTFALRIRIWATFKTGSWWTRSLVIRVLCD DLKVNFVGASGNGALAPGKRDNCDVYA" mobile_element 8654609..8654830 /note="source:scaffold_5_CACTA_0591 9534 9756" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8654888..8656384 /note="source:scaffold_5_CACTA_0591 15437 16629" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8656602..8657918 /note="source:CACAO_M_S_E5336_F7_scaffold_1 1 1316" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8657919..8663933) /note="source:CACAO_M_E3626_F245_scaffold_1 4930 10968" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8663934..8666566 /note="source:CACAO_M_S_E52717_F144_scaffold_5 1 2633" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8666567..8667970 /note="source:CACAO_on_S_E390_scaffold_9 7415 8820" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(8667953..8669425) /note="source:CACAO_M_S_E101988_F164_scaffold_9 8 2846" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8669413..8671664) /note="source:CACAO_M_E85507_F96_scaffold_11 794 3084" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8671894..8672672) /note="source:INTACT99F_F96_scaffold_2-int 1 780" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8673972..8675611 /note="source:CACAO_M_S_E5046_F335_scaffold_1 2523 4140" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8676193..8676743 /note="source:INTACT766_F325_scaffold_5-int 4542 5098" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8676736..8677270) /note="source:CACAO_M_E13157_F7_scaffold_3 4328 4862" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8677005..8677306 /note="source:INTACT766_F325_scaffold_5-int 5142 5444" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8678424..8680981) /note="source:CACAO_M_E58324_F9_scaffold_9 21588 24070" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8681855..8681890 /note="source:CACAO_M_E35511_F5_scaffold_5 18649 18684" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8681886..8682835 /note="source:scaffold_8_CACTA_0858 825 1776" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8682881..8689731) /note="source:CACAO_M_S_E7105_F60_scaffold_2 2 6845" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8689763..8690263) /note="source:INTACT189_F49_scaffold_5-int 16402 16990" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8690261..8691728) /note="source:CACAO_M_S_E66639_F28_scaffold_5 4291 5308" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8691729..8692713) /note="source:INTACT695_F301_scaffold_5-int 12359 13062" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8692714..8694573 /note="source:CACAO_M_E34962_F4_scaffold_5 1 1860" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8698359..8698737 /note="source:scaffold_2_CACTA_0259 5419 5796" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8698762..8700916 /note="source:CACAO_M_E12463_F12_scaffold_3 2933 5189" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8702913..8703598 /note="source:INTACT624_F277_scaffold_2-int 11185 11571" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8703587..8703842) /note="source:INTACT1440F_F102_scaffold_9-int 6382 6637" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8703833..8706155) /note="source:CACAO_M_E14347_F12_scaffold_3 9056 11340" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8704324..8706705 /note="source:INTACT1218F_F372_scaffold_6-int 5932 8291" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8706669..8706719) /note="source:CACAO_M_S_E85473_F233_scaffold_7 1458 1511" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8706714..8709824 /note="source:scaffold_2_CACTA_0262 11404 14559" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8709788..8710110) /note="source:CACAO_M_E43112_F333_scaffold_5 1590 1909" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8709825..8710786 /note="source:CACAO_M_E42395_F3_scaffold_5 16199 17154" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8710775..8711165 /note="source:INTACT624_F277_scaffold_2-int 11185 11578" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8711097..8711338) /note="source:CACAO_M_S_E84376_F22_scaffold_6 3566 3805" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8711338..8712037 /note="source:CACAO_M_E12463_F12_scaffold_3 5183 5880" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8712018..8712322 /note="source:INTACT224_F176_scaffold_8-int 4565 4831" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8712754..8713381 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3256 3859" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8713393..8714466) /note="source:CACAO_M_E59641_F12_scaffold_9 1 1077" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8714468..8715285) /note="source:INTACT771_F78_scaffold_10-int 6208 7021" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8715287..8719200) /note="source:INTACT771_F78_scaffold_10-int 1669 8997" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8719201..8721049) /note="source:CACAO_M_E14705_F78_scaffold_3 985 2833" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8721050..8724226 /note="source:CACAO_M_E34971_F328_scaffold_5 1 3177" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8724227..8732411) /note="source:INTACT771_F78_scaffold_10-int 1 8211" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8732698..8733393) /note="source:CACAO_M_S_E31635_F14_scaffold_3 2551 3213" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8733606..8736237) /note="source:CACAO_M_E13220_F12_scaffold_3 9806 13401" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8736238..8736525 /note="source:CACAO_M_S_E4534_F4_scaffold_1 4286 4572" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(8736526..8741015) /note="source:INTACT518_F239_scaffold_2-int 4949 8857" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8741003..8741131) /note="source:CACAO_M_E50108_F4_scaffold_7 13843 13966" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 8741140..8744579 /note="source:INTACT506_F233_scaffold_3-int 4705 8169" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8741332..8745087) /note="source:INTACT518_F239_scaffold_2-int 1121 4890" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8744587..8746155 /note="source:CACAO_M_S_E84376_F22_scaffold_6 17869 20176" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8745545..8746152) /note="source:INTACT518_F239_scaffold_2-int 1 617" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8746154..8746355) /note="source:scaffold_2_CACTA_0259 5420 5620" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8746219..8746395 /note="source:INTACT146F_F14_scaffold_2-int 14276 14449" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8747337..8748201 /note="source:CACAO_M_E35188_F7_scaffold_5 10423 11288" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8748202..8748878) /note="source:CACAO_M_E23035_F156_scaffold_4 2070 2739" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8749118..8750778) /note="source:CACAO_M_E45504_F98_scaffold_6 8126 9788" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8750879..8756826) /note="source:CACAO_M_E45504_F98_scaffold_6 2158 8111" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(8750964..8758414) /locus_tag="TCM_022913" /note="dbxref CacaoGD:Thecc1EG022913" mRNA complement(join(8750964..8751359,8751509..8752960, 8753060..8753344,8753488..8753753,8753832..8755288, 8755476..8755992,8758080..8758414)) /locus_tag="TCM_022913" /product="DNA/RNA polymerases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400044090.13" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013127t1" /inference="similar to AA sequence:Phytozome:Glyma18g33480.1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2909t4" CDS complement(join(8751128..8751359,8751509..8752960, 8753060..8753344,8753488..8753753,8753832..8755288, 8755476..8755986)) /locus_tag="TCM_022913" /note="paralog of Thecc1EG013127t1" /codon_start=1 /product="DNA/RNA polymerases superfamily protein" /protein_id="EOY08454.1" /db_xref="Phytozome:Glyma18g33480.1" /db_xref="TAIR:ATMG00860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A2I5E5" /translation="MPPKTRAASRRAGEQDAPIEMADRPRASTQRGRGRRGRVTRSVG LDTPVSRQEEGQSSGDVDRHPARGITIEDLAAGLQGVNRVVEMMVTRMEDIQRVVEGR PTVQESHSSQGQADHQHHEEDRGHLDISLPDFSSLSLQHFQGLMHRRNPRFSWIRWRK FVKPWDVLVFDFKLTVSEYDIKFTQLACYAPYLVSTEEMKIQRFVDGLVEPLFRAVAS QDFTTYSAAVDRAQRIEMRTSESRAARDRAKRGKIEGYQGRRDFSSGGSSSSRQGPQR DSRFPQQGSDAPGANIRVGQRTFSSRRQQDSRQSSQVIRSCDTCGRRHSGRCFLTTKT CYGCGQPGHIRRDCPMAHQSPDSARGSTQPASSAPSVAVSSGQEVSGSRGRGAGTSSQ GRPSGSGHQSSIGRGQARVFALTQQEAQTSNAVVSSILSVCNMNARVLFDPGATHSFI SPCFASRLGRGRVRREEQLVVSTPLKEIFVAEWEYESCVVRVKDKDTSVNLVVLDTLD FDVILGMNWLSPCHASVDCYHKLVRFDFPGEPSFSIQGDRSNAPTNLISVISARRLLR QGCIGYLAVVKDSQAKIGDVTQVSVVKEFMDVFPDELPGLPPEREVEFCIDLIPDTRP ISIPPYRMAPAELKELKDQLEDLLDKGFIRPSLNKVTVKNKYPLPRIDDLFDQLQGAQ CFSKIDLRSGYHQLRIRNEDIPKTAFRTRYGHYEFLVMSFGLTNAPVAFMDLMNRVFK PYLDNVAFLGHVVSKEGIQVDTKKIEVVEKWPRPTSVTEIRSFVGLAGYYRRFVKDFS KIVAPLTKLTRKDTKFEWSDACENSFEKLKACLTTAPVLSLSQLKRHEQNYPIHDLEM AAIVFALKIWRHYLYGETCEIYTDHKSLKYIFQQRDLNLRQRRWMELLKDYDCTILYH PGKASVVADALGQKSMGSLAHISICRRSLVREIHSLGDMGVRLEVAETNALLAHFRVR PILMDRIKEAQSKDEFVIKALEDPRGRKGKMFTKGTDGVLRYGTRLYVPDGDGLRREI LEEAHMVAYVVHPGATKMYQDLKEVYWWEELKRDVAEFVSKCLVCQQVKAEHQKPAGL LQPLPVPEWKWEHIAMDFVTGLPRTSGGYDSIWIVVDRLTKSAHFLPVKTTYGAAQYA RVYVDEIVRQHGIPISIVFDRGAQFTGRFWGKLQEALGTKLDFSTAFHPQTDGQSERT IQTLEDMLRACVIDLGVRWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCRSPIGWL EVGERKLLGPELVQDATEKTHMIRQTMLTAQSRQKSYADNRRRDLEFQVGDHVFLKVS PTKGKYNPDPSHVIRYETIQLQDDLSYEEQPVAILDRQVKKLRSKDVALVKVLWRNHT SEEVTWEAEDEMRTKHPHLFDM" mobile_element complement(8757160..8758942) /note="source:CACAO_M_E45504_F98_scaffold_6 7924 9706" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8758934..8761056 /note="source:INTACT90_F13_scaffold_4-int 2158 4298" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8762796..8763522) /note="source:INTACT189_F49_scaffold_5-int 15496 16214" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8764119..8764306 /note="source:CACAO_M_E24592_F195_scaffold_4 19420 19608" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8764289..8764414 /note="source:INTACT616_F52_scaffold_1-int 3499 3628" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8764305..8766343) /note="source:CACAO_M_E33933_F9_scaffold_4 15174 17021" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8766444..8773269 /note="source:INTACT641F_F364_scaffold_5-int 1682 8507" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8773374..8774946 /note="source:INTACT849F_F15_scaffold_5-int 1187 2760" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8775250..8775650) /note="source:INTACT597_F267_scaffold_2-int 12686 13083" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8777271..8778772) /note="source:INTACT597_F267_scaffold_2-int 9762 11236" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8778886..8779859) /note="source:INTACT224_F176_scaffold_8-int 2328 3258" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8781614..8781738) /note="source:CACAO_M_S_E7818_F60_scaffold_2 5786 5896" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8782358..8782799 /note="source:INTACT83_F5_scaffold_9-int 3586 4033" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8782836..8788427) /note="source:CACAO_M_E49805_F5_scaffold_7 467 6029" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8782877..8787741 /note="source:INTACT83_F5_scaffold_9-int 4026 8907" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8788419..8798993 /note="source:CACAO_M_E34995_F15_scaffold_5 1 10575" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8799091..8799467 /note="source:INTACT83_F5_scaffold_9-int 12280 12652" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8799839..8801667 /note="source:INTACT293_F14_scaffold_5-int 8674 10486" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(8803732..8805376) /locus_tag="TCM_022917" /note="dbxref CacaoGD:Thecc1EG022917" mRNA complement(join(8803732..8804564,8805258..8805376)) /locus_tag="TCM_022917" /product="Hydroxyproline-rich glycoprotein family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s07180.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s07180.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc2163t1" CDS complement(8803842..8804498) /locus_tag="TCM_022917" /codon_start=1 /product="Hydroxyproline-rich glycoprotein family protein, putative" /protein_id="EOY08455.1" /db_xref="Phytozome:POPTR_0016s07180.1" /translation="MSPAQKNMASGEPKDCSSILQLALTVLGTVTGMTILIVGISMAS KYAPQPQQQPLILKIHSLSVSGLNASNFLTAASWDATLLFANQNSVLELAIDGFGSSL YYNYSNPISCAVMKAMHLGPKKQRLAQMKFNSTQCGEEQPFIDDRVLEGIRKDEIKGE MSFHIGMKLKVFYRTGILGWDYELKPNCPRVDVELVAGTGDGGVTFDPPKICLFPLRN " gene complement(8805990..8811572) /locus_tag="TCM_022918" /note="dbxref CacaoGD:Thecc1EG022918" mRNA complement(join(8805990..8806935,8807049..8807302, 8807372..8807471,8807551..8807748,8808189..8808394, 8808955..8809167,8809247..8809385,8810048..8810290, 8810385..8810590,8811004..8811099,8811266..8811572)) /locus_tag="TCM_022918" /product="Exocyst subunit exo70 family protein A2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s22030.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044320t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033950001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3646t2" mRNA complement(join(8805990..8806935,8807049..8807302, 8807372..8807748,8808189..8808394,8808955..8809167, 8809247..8809385,8810048..8810290,8810385..8810590, 8811004..8811099,8811266..8811572)) /locus_tag="TCM_022918" /product="Exocyst subunit exo70 family protein A2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s22030.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044320t1" /inference="similar to AA sequence:ricco:29439.m000220" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:PASA:2:TSA:puevd3b022188t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3646t2" mRNA complement(join(8806403..8806935,8807049..8807304, 8808189..8808394,8808955..8809167,8809247..8809385, 8810048..8810290,8810385..8810590,8811004..8811099, 8811266..8811529)) /locus_tag="TCM_022918" /product="Exocyst subunit exo70 family protein A2 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s22030.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044320t1" /inference="similar to AA sequence:ricco:29439.m000220" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc363t4_C1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3646t2" CDS complement(join(8806818..8806935,8807049..8807302, 8807372..8807471,8807551..8807748,8808189..8808394, 8808955..8809167,8809247..8809385,8810048..8810290, 8810385..8810590,8811004..8811099,8811266..8811424)) /locus_tag="TCM_022918" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG044320t1" /codon_start=1 /product="Exocyst subunit exo70 family protein A2 isoform 1" /protein_id="EOY08456.1" /db_xref="Phytozome:GSVIVT01033950001" /db_xref="TAIR:AT5G52340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZD3" /translation="MGVPQAMEVLRERAALVRDSLQKSQTITESMVSILGSFDHRLSA LETAMRPTQIRTHSIRRAHENIDKTLKAAEIILEQFDLTRKAEAKILRGPHEDLESYL EAIDQLRSIVQFFSNNKSYKSSDGILNHANNLLAKAISKLEDEFRTLLTNYSKPVEPD RLFDGLPNSLRPSATSPGKQGELGSKNHSENQKNLENAVYTPPTLIPPRVLPLLHDLA QQMVQAGHQQQLFRIYRDTRASVLEQSLRKLGVERLSKDDIQKMQWEVLEAKIGNWIH YMRIAVKLLFAGEKKICEQILDGIDSLRDQCFAEVTANSVAVLLSFGEAIAKSKRSPE KLFVLLDMYEIMRELQSEIEYLFGSKSCIEMRESAQSLTKRLAQTAQETFGDFEEAVE KDATKTAVLDGTVHPLTSYVINYVKFLFDYQSTLKQLFQEFDDGDADAQLTNVTTRIM QALQTNLDGKSKQYKDPALTQLFLMNNIHYVVRSVRRSEAKDLLGDDWVQIHRRIVQQ HANQYKRISWAKILQCLTIQGAATSGGGGSILGGDTGSGVSRGMVKDRFKTFNVQFEE LHIRQSQWTVPDSELRESLRLAVAEVLLPAYRSFIKRFGPMIENGKNPGKYIRYRPED LERMLSEFFEGKTWNEQKR" CDS complement(join(8807250..8807304,8808189..8808394, 8808955..8809167,8809247..8809385,8810048..8810290, 8810385..8810590,8811004..8811099,8811266..8811424)) /locus_tag="TCM_022918" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29439.m000220; paralog of Thecc1EG044320t1" /codon_start=1 /product="Exocyst subunit exo70 family protein A2 isoform 3" /protein_id="EOY08458.1" /db_xref="TAIR:AT5G52340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FHC6" /translation="MGVPQAMEVLRERAALVRDSLQKSQTITESMVSILGSFDHRLSA LETAMRPTQIRTHSIRRAHENIDKTLKAAEIILEQFDLTRKAEAKILRGPHEDLESYL EAIDQLRSIVQFFSNNKSYKSSDGILNHANNLLAKAISKLEDEFRTLLTNYSKPVEPD RLFDGLPNSLRPSATSPGKQGELGSKNHSENQKNLENAVYTPPTLIPPRVLPLLHDLA QQMVQAGHQQQLFRIYRDTRASVLEQSLRKLGVERLSKDDIQKMQWEVLEAKIGNWIH YMRIAVKLLFAGEKKICEQILDGIDSLRDQCFAEVTANSVAVLLSFGEAIAKSKRSPE KLFVLLDMYEIMRELQSEIEYLFGSKSCIEMRESAQSLTKRLAQTAQETFGDFEEAVE KDATKTAVLDGTVHPLTSYVINYVKFLFEDPSVSHHSGGCYIRWWW" CDS complement(join(8807505..8807748,8808189..8808394, 8808955..8809167,8809247..8809385,8810048..8810290, 8810385..8810590,8811004..8811099,8811266..8811424)) /locus_tag="TCM_022918" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29439.m000220; paralog of Thecc1EG044320t1" /codon_start=1 /product="Exocyst subunit exo70 family protein A2 isoform 2" /protein_id="EOY08457.1" /db_xref="TAIR:AT5G52340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZD3" /translation="MGVPQAMEVLRERAALVRDSLQKSQTITESMVSILGSFDHRLSA LETAMRPTQIRTHSIRRAHENIDKTLKAAEIILEQFDLTRKAEAKILRGPHEDLESYL EAIDQLRSIVQFFSNNKSYKSSDGILNHANNLLAKAISKLEDEFRTLLTNYSKPVEPD RLFDGLPNSLRPSATSPGKQGELGSKNHSENQKNLENAVYTPPTLIPPRVLPLLHDLA QQMVQAGHQQQLFRIYRDTRASVLEQSLRKLGVERLSKDDIQKMQWEVLEAKIGNWIH YMRIAVKLLFAGEKKICEQILDGIDSLRDQCFAEVTANSVAVLLSFGEAIAKSKRSPE KLFVLLDMYEIMRELQSEIEYLFGSKSCIEMRESAQSLTKRLAQTAQETFGDFEEAVE KDATKTAVLDGTVHPLTSYVINYVKFLFDYQSTLKQLFQEFDDGDADAQLTNVTTRIM QALQTNLDGKSKQYKDPALTQLFLMNNIHYVVRSVRRCVLYLACFVGDDSH" mobile_element complement(8813274..8815398) /note="source:CACAO_M_E58324_F9_scaffold_9 8057 10222" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8815399..8818376 /note="source:CACAO_M_E35001_F15_scaffold_5 1 2978" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8818377..8818780) /note="source:CACAO_M_E58324_F9_scaffold_9 7669 8061" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8819816..8820062) /note="source:INTACT189_F49_scaffold_5-int 17862 18169" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8828376..8828680) /note="source:scaffold_1_CACTA_0028 4689 4966" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8832509..8833100) /note="source:CACAO_M_E1841_F5_scaffold_1 25195 25802" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8832606..8833259) /note="source:scaffold_3_CACTA_0382 11229 11876" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8833266..8836014) /note="source:CACAO_M_S_E32089_F15_scaffold_3 1 3469" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8836015..8836751 /note="source:CACAO_M_S_E5046_F335_scaffold_1 665 1418" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8839644..8839968) /note="source:CACAO_M_E1841_F5_scaffold_1 9946 10270" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8839982..8840335 /note="source:CACAO_M_S_E52921_F60_scaffold_5 16174 16527" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8840225..8840348) /note="source:CACAO_M_E58819_F24_scaffold_9 3346 3469" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8840331..8840424) /note="source:CACAO_M_E1841_F5_scaffold_1 14410 14503" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8841365..8842329) /note="source:CACAO_M_E1841_F5_scaffold_1 9632 10619" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(8845008..8848072) /locus_tag="TCM_022920" /note="dbxref CacaoGD:Thecc1EG022920" mRNA complement(join(8845008..8845594,8846291..8846513, 8846653..8846799,8846912..8847139,8847857..8848072)) /locus_tag="TCM_022920" /product="Embryo sac development arrest 12, putative" /inference="alignment:exonerate- protein:2:ricco:29439.m000221" /inference="similar to AA sequence:ricco:29439.m000221" /note="quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g09478t00001" CDS complement(join(8845461..8845594,8846291..8846513, 8846653..8846799,8846912..8847139,8847857..8848033)) /locus_tag="TCM_022920" /note="dbxref ricco:29439.m000221" /codon_start=1 /product="Embryo sac development arrest 12, putative" /protein_id="EOY08459.1" /translation="MDMCLLKVESGHTVVGRGSGGEDMDKTHRAKTAEGWRERGTERY GPDSLGVCRIGHVTSNEAKTMANELSNSPPNLDDGELWLPSDIFLNEAPSKFKPLLPH HLPFSCMDDLAPRFASLSLPKHQQKLPKATNFERLKEPVCCGSMNGSGFKGGQSLYGF RTGPFLGGTKPVHEFQFLKPTPAQVESYVEARARVLQRQQNRLIQNRVFPFQASGFNT NKYGLGGGLVRECGGTGVFHPRTVNTDLNASTTFHYKKKQSVRNRQLQESQVSSMKRV GVTVAKQEDCYYHLPAEMGLPRDWTY" gene 8852768..8855608 /locus_tag="TCM_022921" /note="dbxref CacaoGD:Thecc1EG022921" mRNA join(8852768..8853104,8853633..8854235,8854634..8854748, 8854911..8855608) /locus_tag="TCM_022921" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002747t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(8852793..8853104,8853633..8854235,8854634..8854748, 8854911..8855089) /locus_tag="TCM_022921" /note="paralog of Thecc1EG002747t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08460.1" /translation="MAFAPTALAPMVLLQKNSNPATLDDRSRKKGRFRPLNDEISLLS DQMTIHSNPSFNKVLLSSEGEKTNPDVNSDNENESMDENDADMAEEDADFELDDEVQF GLRIEYEGLPRSCFNCGMYNHTKEVCTKQAVSSALKEFPQESTRGIEAEESIYGPWMI ASRRKQRRNESRSNQRVTSTINRVEHKGSRFSILDDISHDPTNEDQNGSHIGERLSDE RSTKPTPNVIASQKNLINTSNNVIQGNPPTNKATANIDCMDANNKGNEIRKAKTNDKF NQELDSIMDVDLSSVIQLTITLDLSRNSVSDYALGIAKGQVIKFFRVVKDLVKSYAIN MLILLKPRINKPNAFWFFTVVYGNPSPNIRCQLWEELSSFESTVTGPWLLASDFNAFL HSHEKTGGFP" gene 8855748..8860727 /locus_tag="TCM_022922" /note="dbxref CacaoGD:Thecc1EG022922" mRNA join(8855748..8856009,8856752..8856949,8857039..8857084, 8857313..8857768,8860515..8860727) /locus_tag="TCM_022922" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene10207" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(8855848..8856009,8856752..8856949,8857039..8857084, 8857313..8857755) /locus_tag="TCM_022922" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08461.1" /translation="MRGAFPKLDDSALNNLTKPVEENEVKEALFEMKPLKAPGIDGFP ALFFHSQWQVEKKSMLKNLPSTTPAMYQHLSLWILVNVQVTFIQKIWANIRASLLYTN ERMQTSSLTWKRKSQASLTVVIPSKTYKKIKAHYNIHKPGASTFWTAITQSWPQFKPN IKWAMGNEISIRLWTDQWLDDIILVNVAKSIGIEIIDESSVKEYVTTEGEWDLDRVVN LIPPKVCNRLHETIPPTNNVEQDKPFWAYTPSGIFTMSSAYKVLRGLSLSNTSLDNKI WKLIRS" mobile_element 8859465..8860125 /note="source:CACAO_M_E1841_F5_scaffold_1 14494 15162" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(8861222..8862621) /locus_tag="TCM_022923" /note="dbxref CacaoGD:Thecc1EG022923" mRNA complement(join(8861222..8861413,8861594..8862621)) /locus_tag="TCM_022923" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29439.m000222" /inference="similar to AA sequence:ricco:29439.m000222" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g11893t00001" CDS complement(8861600..8862274) /locus_tag="TCM_022923" /note="dbxref ricco:29439.m000222" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08462.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T2S6" /translation="MVEAAGRGGGVPFPVVFFDGECETGIGNVVIHPAMDFKAFQSIL SRMIGISPHQFSVYIADGNNSHNRVPITGKVNFSAVSRGKDCFFLVVLKRSWRSGTRK GKNEEPSFPAAAMKKELPTNVMLLRRGGGGGNNLMDARVFTGLDEFERRVRDLQMEKE RYLVNLGRVNSKFERESKSSVCEECEDAKVVGRAPGFHWCVYDAVTFGFRSHAGPIAR PGKGPG" gene 8862416..8865515 /locus_tag="TCM_022924" /note="dbxref CacaoGD:Thecc1EG022924" mRNA join(8862416..8862826,8862914..8862964,8863755..8863847, 8863976..8864070,8864667..8864781,8864892..8865515) /locus_tag="TCM_022924" /product="Nudix hydrolase" /inference="alignment:exonerate- protein:2:ricco:29439.m000223" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044312t1" /inference="similar to AA sequence:ricco:29439.m000223" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Newbler:10:TSA:cgbaB_g11696t00001" CDS join(8862497..8862826,8862914..8862964,8863755..8863847, 8863976..8864070,8864667..8864781,8864892..8865017) /locus_tag="TCM_022924" /note="dbxref ricco:29439.m000223; paralog of Thecc1EG044312t1" /codon_start=1 /product="Nudix hydrolase" /protein_id="EOY08463.1" /db_xref="TAIR:AT5G06340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIM3" /translation="MILKRGRNLGLKEKRVGFGIGFSAWRDWTGSDLSKRRSKMAGCE LVGNSVFYRTERRNCPCKLGKFSGVPLFYHLLQAPLTNSSASLSVESPPDGYRKNVGI CLLNPSKKIFTASRIHIPNTWQMPQGGANNGEDLRKAAMRELREETGVTSAEFVAEAP YWLTYDFPIKVKSKLNRRWGTKYRGQAQKWFLFKFTGNEEEINLLGDGSEKPEFKEWS WRLPEQVVELAVDFKKPVYEQVLEVFSPYLLLDTDEEQSTVKEANWGEVGQ" mobile_element 8865899..8866606 /note="source:MITE_Unknow_2_24 6 699" /mobile_element_type="transposon:TIR/MITE" gene complement(8866695..8869852) /locus_tag="TCM_022925" /note="dbxref CacaoGD:Thecc1EG022925" mRNA complement(join(8866695..8867104,8867905..8868242, 8868554..8868622,8868742..8868837,8869148..8869412, 8869519..8869852)) /locus_tag="TCM_022925" /product="Damaged DNA binding,DNA-directed DNA polymerases, putative" /inference="alignment:exonerate- protein:2:ricco:29439.m000224" /inference="similar to AA sequence:Phytozome:POPTR_0016s07150.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3648t2" CDS complement(join(8866963..8867104,8867905..8868242, 8868554..8868622,8868742..8868837,8869148..8869412, 8869519..8869682)) /locus_tag="TCM_022925" /codon_start=1 /product="Damaged DNA binding,DNA-directed DNA polymerases, putative" /protein_id="EOY08464.1" /db_xref="Phytozome:POPTR_0016s07150.1" /db_xref="TAIR:AT4G31400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SXT2" /translation="MQSKINSFFKRSSSSSSIKSQKSSPVFSNDEFAIWENSQHTIVN TYTRRPPKIHGNDAKKESSNERLEKPISENEFSSKDCGSNGRNLNKKRSYAQFHLELG QSDFLLHACSTCRVKYSPGDEEDEKSHSILHKNFTRGIQFKGWRNERVVCMPKVEGGR IVLVLDSDPVAQRKKVQEVVKMMEIELGGEWIFHKLCKVYLFVFSQRIAGCLVAEPIK EASKVLSCSVGERHDGAPAKQTMSKSSKLQFGEIVFQREVDKRGPSEALIGNHTGAIF CEKEAVPAACGIRAIWVTPSNRRKGIATQLLEAVRKSFCMGFVIEKSQLAFSQPSSEG QALASNYIGTGSFLVYKTGNLCS" gene complement(8870057..8880796) /locus_tag="TCM_022926" /note="dbxref CacaoGD:Thecc1EG022926" mRNA complement(join(8870057..8870728,8871282..8871400, 8872080..8872406,8872703..8872843,8873020..8873171, 8873527..8873661,8874122..8874247,8874338..8874455, 8874626..8874748,8874888..8874974,8875141..8875260, 8875993..8876124,8876707..8877005,8877527..8877587, 8877772..8877906,8878320..8878469,8879078..8879247, 8879480..8879602,8879781..8879853,8879974..8880036)) /locus_tag="TCM_022926" /product="ARM repeat superfamily protein, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene18326" /inference="similar to AA sequence:Phytozome:POPTR_0011s09780.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc736t1; alternateUTRof:Thecc1EG022926t2; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc747t5_C1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc740t6" mRNA complement(join(8870057..8870759,8871282..8871400, 8872080..8872406,8872703..8872843,8873020..8873171, 8873527..8873661,8874122..8874247,8874338..8874455, 8874626..8874748,8874888..8874974,8875141..8875260, 8875993..8876124,8876707..8877005,8877527..8877587, 8877772..8877906,8878320..8878469,8879078..8879247, 8879480..8879602,8879781..8879853,8879974..8880036)) /locus_tag="TCM_022926" /product="ARM repeat superfamily protein, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene18326" /inference="similar to AA sequence:Phytozome:POPTR_0011s09780.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3655t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc747t5_C1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc740t6" mRNA complement(join(8870057..8870728,8871282..8872406, 8872703..8872843,8873020..8873171,8873527..8873661, 8874122..8874247,8874338..8874455,8874626..8874748, 8874888..8874974,8875141..8875260,8875993..8876124, 8876707..8877005,8877527..8877587,8877772..8877906, 8878320..8878469,8879078..8879247,8879480..8879602, 8879781..8879853,8879974..8880036)) /locus_tag="TCM_022926" /product="ARM repeat superfamily protein, putative isoform 4" /inference="alignment:exonerate-protein:2:frave:gene18326" /inference="similar to AA sequence:Phytozome:POPTR_0011s09780.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc736t6; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc747t5_C1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc740t6" mRNA complement(join(8870060..8871014,8871310..8871400, 8872080..8872406,8872703..8872843,8873020..8873171, 8873527..8873661,8874122..8874247,8874338..8874455, 8874626..8874748,8874888..8874974,8875141..8875260, 8875993..8876124,8876707..8877005,8877527..8877587, 8877772..8877906,8878320..8878469,8879078..8879247, 8879480..8879602,8879781..8879853,8879974..8880034, 8880126..8880329,8880570..8880796)) /locus_tag="TCM_022926" /product="ARM repeat superfamily protein, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene18326" /inference="similar to AA sequence:Phytozome:POPTR_0011s09780.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc747t5_C1" CDS complement(join(8870974..8871014,8871310..8871400, 8872080..8872406,8872703..8872843,8873020..8873171, 8873527..8873661,8874122..8874247,8874338..8874455, 8874626..8874748,8874888..8874974,8875141..8875260, 8875993..8876124,8876707..8877005,8877527..8877587, 8877772..8877906,8878320..8878469,8879078..8879247, 8879480..8879602,8879781..8879853,8879974..8880034, 8880126..8880329,8880570..8880580)) /locus_tag="TCM_022926" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="ARM repeat superfamily protein, putative isoform 1" /protein_id="EOY08465.1" /db_xref="Phytozome:POPTR_0011s09780.1" /db_xref="TAIR:AT5G06350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T2S9" /translation="MWVGSYSDPSPQTLFKLPRPKTENPFKGGPKAPTRLHSLNPCTR WQVGTRVFILQRKLYSIIFLGSQTVIFSTMVRSKAPSKKQQKKGIDFKKIKRKLGRKL PPPTNATNTEIKSKAIVLPEQSVATNKEGLAVSKKGLTLKELLQQTSHHNAKVRRDAL MGIKDLVLKHPAELRLHRYAVIEKLRERISDDDKVVREALYQLFKSEIFPGCAEDNQG LFISLVMTYIFNAMTNLSIDIRLMAFRFFDLVVQYHPPCFSLYAEKILQSYEDILRKN QFYLEDKGKLKSTLYGLVRCLSLLPSKKPGCQKNILGERKIHAFEPDLPTENTGFSVI IKKLKELVLVLINCFQDFIPLLNSMPQLDAQSFDCILSILQSIDIAVRFFIYGNHEES PEANPLQVTWDQTLLSGLSKKLLGVFPLYPKHHLSVKEDDRYFILNIVITEIFLHLRE WICPSANVFAKFLEFMENALLGKTCSSTRSGKATWEKHVPSLLPFIPKLVSEVTTDWQ SHLLEAFTKTFRDCNPESSLKLACLSMIEEMLIPRGDMHYTEASDPVALDYQTIWIRE LPLLLILLGDKWPSSSQVVLHLLLRLGQFACWNSSLIWEYENTQFALCEFYSTCREGN IYYGPFMRLPRDSQELSICCLYYFSNFSTLLLKAITSCCLCPELEPYVLFRIIEVVHA AYKAGHIQFADHISFFITLLSRFKVYPENICPVKESDVQISNCGTFKSLTCMVCSCLS QMGDSSVVFRILEKAILDLISLKPQLDNACAMLRVLIMLDSKPTRLSEQSIIALSNFL PGYLMDVVHCIPEVDGNEVAVSNHVQTCRYYLLPCFFLFDRSNQLVKLFLNVMGSSLT DSSLSLESHNSTQYVTDSLSRMNITVSLLLLIYKDVKVQKIMSLFRTEIGSIMQSIAS LQSSEVNMTIEERHKFQCSFERLKIVASSSPVVYIDDASISLSGA" CDS complement(join(8871305..8871400,8872080..8872406, 8872703..8872843,8873020..8873171,8873527..8873661, 8874122..8874247,8874338..8874455,8874626..8874748, 8874888..8874974,8875141..8875260,8875993..8876124, 8876707..8877005,8877527..8877587,8877772..8877906, 8878320..8878469,8879078..8879247,8879480..8879602, 8879781..8879853,8879974..8880030)) /locus_tag="TCM_022926" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="ARM repeat superfamily protein, putative isoform 2" /protein_id="EOY08466.1" /db_xref="Phytozome:POPTR_0011s09780.1" /db_xref="TAIR:AT5G06350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T2S9" /translation="MVRSKAPSKKQQKKGIDFKKIKRKLGRKLPPPTNATNTEIKSKA IVLPEQSVATNKEGLAVSKKGLTLKELLQQTSHHNAKVRRDALMGIKDLVLKHPAELR LHRYAVIEKLRERISDDDKVVREALYQLFKSEIFPGCAEDNQGLFISLVMTYIFNAMT NLSIDIRLMAFRFFDLVVQYHPPCFSLYAEKILQSYEDILRKNQFYLEDKGKLKSTLY GLVRCLSLLPSKKPGCQKNILGERKIHAFEPDLPTENTGFSVIIKKLKELVLVLINCF QDFIPLLNSMPQLDAQSFDCILSILQSIDIAVRFFIYGNHEESPEANPLQVTWDQTLL SGLSKKLLGVFPLYPKHHLSVKEDDRYFILNIVITEIFLHLREWICPSANVFAKFLEF MENALLGKTCSSTRSGKATWEKHVPSLLPFIPKLVSEVTTDWQSHLLEAFTKTFRDCN PESSLKLACLSMIEEMLIPRGDMHYTEASDPVALDYQTIWIRELPLLLILLGDKWPSS SQVVLHLLLRLGQFACWNSSLIWEYENTQFALCEFYSTCREGNIYYGPFMRLPRDSQE LSICCLYYFSNFSTLLLKAITSCCLCPELEPYVLFRIIEVVHAAYKAGHIQFADHISF FITLLSRFKVYPENICPVKESDVQISNCGTFKSLTCMVCSCLSQMGDSSVVFRILEKA ILDLISLKPQLDNACAMLRVLIMLDSKPTRLSEQSIIALSNFLPGYLMDVVHCIPEVD GNEVAVSNHVQTCRYYLLPCFFLFDRSNQLVKLFLNVMGSSLTDSSLSLESHNSTQYV TDSLSRMNITVSLLLLIYKDVKVQKIMSLFRTEIGSIMQSIASLQSSEVNMTIEERHK FQCSFERLKIVASSSPVG" CDS complement(join(8871305..8871400,8872080..8872406, 8872703..8872843,8873020..8873171,8873527..8873661, 8874122..8874247,8874338..8874455,8874626..8874748, 8874888..8874974,8875141..8875260,8875993..8876124, 8876707..8877005,8877527..8877587,8877772..8877906, 8878320..8878469,8879078..8879247,8879480..8879602, 8879781..8879853,8879974..8880030)) /locus_tag="TCM_022926" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="ARM repeat superfamily protein, putative isoform 2" /protein_id="EOY08467.1" /db_xref="Phytozome:POPTR_0011s09780.1" /db_xref="TAIR:AT5G06350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T2S9" /translation="MVRSKAPSKKQQKKGIDFKKIKRKLGRKLPPPTNATNTEIKSKA IVLPEQSVATNKEGLAVSKKGLTLKELLQQTSHHNAKVRRDALMGIKDLVLKHPAELR LHRYAVIEKLRERISDDDKVVREALYQLFKSEIFPGCAEDNQGLFISLVMTYIFNAMT NLSIDIRLMAFRFFDLVVQYHPPCFSLYAEKILQSYEDILRKNQFYLEDKGKLKSTLY GLVRCLSLLPSKKPGCQKNILGERKIHAFEPDLPTENTGFSVIIKKLKELVLVLINCF QDFIPLLNSMPQLDAQSFDCILSILQSIDIAVRFFIYGNHEESPEANPLQVTWDQTLL SGLSKKLLGVFPLYPKHHLSVKEDDRYFILNIVITEIFLHLREWICPSANVFAKFLEF MENALLGKTCSSTRSGKATWEKHVPSLLPFIPKLVSEVTTDWQSHLLEAFTKTFRDCN PESSLKLACLSMIEEMLIPRGDMHYTEASDPVALDYQTIWIRELPLLLILLGDKWPSS SQVVLHLLLRLGQFACWNSSLIWEYENTQFALCEFYSTCREGNIYYGPFMRLPRDSQE LSICCLYYFSNFSTLLLKAITSCCLCPELEPYVLFRIIEVVHAAYKAGHIQFADHISF FITLLSRFKVYPENICPVKESDVQISNCGTFKSLTCMVCSCLSQMGDSSVVFRILEKA ILDLISLKPQLDNACAMLRVLIMLDSKPTRLSEQSIIALSNFLPGYLMDVVHCIPEVD GNEVAVSNHVQTCRYYLLPCFFLFDRSNQLVKLFLNVMGSSLTDSSLSLESHNSTQYV TDSLSRMNITVSLLLLIYKDVKVQKIMSLFRTEIGSIMQSIASLQSSEVNMTIEERHK FQCSFERLKIVASSSPVG" mRNA complement(join(<8871371..8871400,8872281..8872406, 8872703..8872843,8873020..8873171,8873527..8873661, 8874122..8874247,8874338..8874455,8874626..8874748, 8874888..8874974,8875141..8875260,8875993..8876124, 8876707..8877005,8877527..8877587,8877772..8877906, 8878320..8878469,8879078..8879247,8879480..8879602, 8879781..8879853,8879974..>8880036)) /locus_tag="TCM_022926" /product="ARM repeat superfamily protein, putative isoform 5" /inference="alignment:exonerate-protein:2:frave:gene18326" /inference="similar to AA sequence:Phytozome:POPTR_0011s09780.1" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc747t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc740t6; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc747t5_C1" CDS complement(join(<8871371..8871400,8872281..8872406, 8872703..8872843,8873020..8873171,8873527..8873661, 8874122..8874247,8874338..8874455,8874626..8874748, 8874888..8874974,8875141..8875260,8875993..8876124, 8876707..8877005,8877527..8877587,8877772..8877906, 8878320..8878469,8879078..8879247,8879480..8879602, 8879781..8879853,8879974..>8880036)) /locus_tag="TCM_022926" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="ARM repeat superfamily protein, putative isoform 5" /protein_id="EOY08469.1" /db_xref="Phytozome:POPTR_0011s09780.1" /db_xref="TAIR:AT5G06350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T2S9" /translation="STMVRSKAPSKKQQKKGIDFKKIKRKLGRKLPPPTNATNTEIKS KAIVLPEQSVATNKEGLAVSKKGLTLKELLQQTSHHNAKVRRDALMGIKDLVLKHPAE LRLHRYAVIEKLRERISDDDKVVREALYQLFKSEIFPGCAEDNQGLFISLVMTYIFNA MTNLSIDIRLMAFRFFDLVVQYHPPCFSLYAEKILQSYEDILRKNQFYLEDKGKLKST LYGLVRCLSLLPSKKPGCQKNILGERKIHAFEPDLPTENTGFSVIIKKLKELVLVLIN CFQDFIPLLNSMPQLDAQSFDCILSILQSIDIAVRFFIYGNHEESPEANPLQVTWDQT LLSGLSKKLLGVFPLYPKHHLSVKEDDRYFILNIVITEIFLHLREWICPSANVFAKFL EFMENALLGKTCSSTRSGKATWEKHVPSLLPFIPKLVSEVTTDWQSHLLEAFTKTFRD CNPESSLKLACLSMIEEMLIPRGDMHYTEASDPVALDYQTIWIRELPLLLILLGDKWP SSSQVVLHLLLRLGQFACWNSSLIWEYENTQFALCEFYSTCREGNIYYGPFMRLPRDS QELSICCLYYFSNFSTLLLKAITSCCLCPELEPYVLFRIIEVVHAAYKAGHIQFADHI SFFITLLSRFKVYPENICPVKESDVQISNCGTFKSLTCMVCSCLSQMGDSSVVFRILE KAILDLISLKPQLDNACAMLRVLIMLDSKPTRLSEQSIIALSNFLPGYLMDVVHCIPE VDGNEVAVSNHVQTCRYYLLPCFFLFDRSNQLVKLFLNSSEVNMTIEE" CDS complement(join(8872005..8872406,8872703..8872843, 8873020..8873171,8873527..8873661,8874122..8874247, 8874338..8874455,8874626..8874748,8874888..8874974, 8875141..8875260,8875993..8876124,8876707..8877005, 8877527..8877587,8877772..8877906,8878320..8878469, 8879078..8879247,8879480..8879602,8879781..8879853, 8879974..8880030)) /locus_tag="TCM_022926" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="ARM repeat superfamily protein, putative isoform 4" /protein_id="EOY08468.1" /db_xref="Phytozome:POPTR_0011s09780.1" /db_xref="TAIR:AT5G06350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T2S9" /translation="MVRSKAPSKKQQKKGIDFKKIKRKLGRKLPPPTNATNTEIKSKA IVLPEQSVATNKEGLAVSKKGLTLKELLQQTSHHNAKVRRDALMGIKDLVLKHPAELR LHRYAVIEKLRERISDDDKVVREALYQLFKSEIFPGCAEDNQGLFISLVMTYIFNAMT NLSIDIRLMAFRFFDLVVQYHPPCFSLYAEKILQSYEDILRKNQFYLEDKGKLKSTLY GLVRCLSLLPSKKPGCQKNILGERKIHAFEPDLPTENTGFSVIIKKLKELVLVLINCF QDFIPLLNSMPQLDAQSFDCILSILQSIDIAVRFFIYGNHEESPEANPLQVTWDQTLL SGLSKKLLGVFPLYPKHHLSVKEDDRYFILNIVITEIFLHLREWICPSANVFAKFLEF MENALLGKTCSSTRSGKATWEKHVPSLLPFIPKLVSEVTTDWQSHLLEAFTKTFRDCN PESSLKLACLSMIEEMLIPRGDMHYTEASDPVALDYQTIWIRELPLLLILLGDKWPSS SQVVLHLLLRLGQFACWNSSLIWEYENTQFALCEFYSTCREGNIYYGPFMRLPRDSQE LSICCLYYFSNFSTLLLKAITSCCLCPELEPYVLFRIIEVVHAAYKAGHIQFADHISF FITLLSRFKVYPENICPVKESDVQISNCGTFKSLTCMVCSCLSQMGDSSVVFRILEKA ILDLISLKPQLDNACAMLRVLIMLDSKPTRLSEQSIIALSNFLPGYLMDVVHCIPEVD GNEVAVSNHVQTCRYYLLPCFFLFDRSNQLVKLFLNVMGSSLTDSSLSLESHNSTQYV TDSLSRMNITVSLLLLIYKDVKVQKIMSLFRTEIGSIMQSIASLQVWFCSVNFSSMKS PYLCKQNLKYV" gene 8881197..8885681 /locus_tag="TCM_022927" /note="dbxref CacaoGD:Thecc1EG022927" mRNA join(8881197..8881526,8881655..8881820,8882625..8883087, 8884353..8884412,8884525..8884593,8884680..8884723, 8884809..8885681) /locus_tag="TCM_022927" /product="Serine/threonine-protein kinase irlC isoform 1" /inference="alignment:exonerate- protein:2:ricco:29439.m000227" /inference="similar to AA sequence:ricco:29439.m000227" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Newbler:10:TSA:cgbaL_g14098t00001" CDS join(8881223..8881526,8881655..8881820,8882625..8883087, 8884353..8884412,8884525..8884593,8884680..8884723, 8884809..8884992) /locus_tag="TCM_022927" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29439.m000227" /codon_start=1 /product="Serine/threonine-protein kinase irlC isoform 1" /protein_id="EOY08470.1" /db_xref="TAIR:AT3G09180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RWM3" /translation="MLQQHQHYLQSAATAAPPLPPPATSTPPSSTAGEAPPKQVALAM DRLGHAARLIADIRLGADRLLEALFVAAQPHQSSKPLHLFRQEDDSMRQHLQDLRTIG RQLEESGVLNESLRSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLAL KAFTDQKRRFFPHLDDEQNGQGTDSVSKKHRSSQALLEDNQDNLSDCKTLSDVLTSLE KDMPNLKVLTYERLDWLKRASSLPASANDNTMEVPKHNFHSSSILRPGPQTVVSMDKV AVIELLFPSVFRAVVSLHPAGSTDPDSVAFFSPDEGGSYIHARGSSVYHVYRHITEHA AVALQYFLGIRSETALHSLLHWICSYRSLFTDICSKCGRLLAMEKQSALLLPPVHRPY RTFSPSKVSSTQAIASTGDQSCSAPGAYHIGCFSDEA" mRNA join(8881660..8881820,8882625..8883087,8884353..8884412, 8884525..8884593,8884680..8884723,8884809..8885528) /locus_tag="TCM_022927" /product="Serine/threonine-protein kinase irlC isoform 2" /inference="alignment:exonerate- protein:2:ricco:29439.m000227" /inference="similar to AA sequence:ricco:29439.m000227" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc402t2; inference alignment:Newbler:10:TSA:cgbaL_g14098t00001" CDS join(8881726..8881820,8882625..8883087,8884353..8884412, 8884525..8884593,8884680..8884723,8884809..8884992) /locus_tag="TCM_022927" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29439.m000227" /codon_start=1 /product="Serine/threonine-protein kinase irlC isoform 2" /protein_id="EOY08471.1" /db_xref="TAIR:AT3G09180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RWM3" /translation="MPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRR FFPHLDDEQNGQGTDSVSKKHRSSQALLEDNQDNLSDCKTLSDVLTSLEKDMPNLKVL TYERLDWLKRASSLPASANDNTMEVPKHNFHSSSILRPGPQTVVSMDKVAVIELLFPS VFRAVVSLHPAGSTDPDSVAFFSPDEGGSYIHARGSSVYHVYRHITEHAAVALQYFLG IRSETALHSLLHWICSYRSLFTDICSKCGRLLAMEKQSALLLPPVHRPYRTFSPSKVS STQAIASTGDQSCSAPGAYHIGCFSDEA" gene complement(8886008..8891382) /locus_tag="TCM_022928" /note="dbxref CacaoGD:Thecc1EG022928" mRNA complement(join(8886008..8886300,8886862..8887795, 8888432..8890873,8891120..8891382)) /locus_tag="TCM_022928" /product="Leucine-rich repeat protein kinase family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29439.m000228" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041268t1" /inference="similar to AA sequence:ricco:29439.m000228" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc920t4" CDS complement(join(8887287..8887795,8888432..8890772)) /locus_tag="TCM_022928" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29439.m000228; paralog of Thecc1EG041268t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein isoform 1" /protein_id="EOY08472.1" /db_xref="TAIR:AT2G01820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9A6" /translation="MRKKFAFVLLLSLVRVVFSATDPGDLDILMQFRDGLENPELLKW PENGDDPCGPPSWNHVVCDKSRVTQIQAQAVGLKGTLPQNLNKLSMLKNIGLQKNQLS GKLPSISGLSNLVYAYLDYNNFDSIPAEFFDGLDNLQFLALDQNNFNASTGWSFPKAL QNSAQLTNLSCMSCNLIGPLPDFLGSMPSLTNLRLSGNRLSGEIPGTFNGSALQMLWL NDQLGGGMTGPIDVVATMESLSVLWLHGNQFTGPIPENIGNLTLLKDLNLNSNNLVGL IPDSLANMRFNNLDLNNNQLMGPIPMFKTPNVTFASNKFCQATQGLPCAPEVMALIGF LDWVNYPQRLVNSWSDNEPCNWVGIRCFSGKVSIINLPHYNLSGTLSPSVAKLDSLSE IRLQSNNLTGPIPENWTSLKSLETLDLSDNNISGPLPKFSSTVKLVTTGNPISDGHKT APSNRDNTPSVSSDSPPNSPSSSLKGSGSTPTDSSVESTKTKSFKRNTFVSIVAPVAS FAVLAFLVIPLSIYCYKKRKDSKLASTSLVIHPRDPSEDNVVKVVVANNTHGSTSTLT GSGSASRNGSSIGESHVIEAGNLVISVQVLRNVTKNFAPENELGRGGFGVVYKGELDD GTQIAVKRMEAGVITSKALDEFQAEIAVLSKVRHRHLVSLLGYSIEGNERILVYEYMS QGALSKHLFHWKSLKLEPLSWKRRLNIALDVARGMEYLHSLAHQSFIHRDLKSSNILL GDDFKAKVSDFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVTGKITTKADVFSFGVVL MELLTGLMALDEDRPEETQYLAAWFWHIKSDEEKLRAAIDPDLDVKDETFESISIIAE LAGHCTAREPSQRPDMGHAVNVLAPLVEKWKPLDDDNDDYCGIDYSLPLNQMVKGWQE AEGKDFSYMDLEDSKGSIPARPTGFAESFTSADGR" mRNA complement(join(8888094..8888302,8888432..8890873, 8891120..8891206)) /locus_tag="TCM_022928" /product="Leucine-rich repeat protein kinase family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29439.m000228" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041268t1" /inference="similar to AA sequence:ricco:29439.m000228" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc920t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc920t4" CDS complement(join(8888298..8888302,8888432..8890772)) /locus_tag="TCM_022928" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29439.m000228; paralog of Thecc1EG041268t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein isoform 2" /protein_id="EOY08473.1" /db_xref="TAIR:AT2G01820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9A6" /translation="MRKKFAFVLLLSLVRVVFSATDPGDLDILMQFRDGLENPELLKW PENGDDPCGPPSWNHVVCDKSRVTQIQAQAVGLKGTLPQNLNKLSMLKNIGLQKNQLS GKLPSISGLSNLVYAYLDYNNFDSIPAEFFDGLDNLQFLALDQNNFNASTGWSFPKAL QNSAQLTNLSCMSCNLIGPLPDFLGSMPSLTNLRLSGNRLSGEIPGTFNGSALQMLWL NDQLGGGMTGPIDVVATMESLSVLWLHGNQFTGPIPENIGNLTLLKDLNLNSNNLVGL IPDSLANMRFNNLDLNNNQLMGPIPMFKTPNVTFASNKFCQATQGLPCAPEVMALIGF LDWVNYPQRLVNSWSDNEPCNWVGIRCFSGKVSIINLPHYNLSGTLSPSVAKLDSLSE IRLQSNNLTGPIPENWTSLKSLETLDLSDNNISGPLPKFSSTVKLVTTGNPISDGHKT APSNRDNTPSVSSDSPPNSPSSSLKGSGSTPTDSSVESTKTKSFKRNTFVSIVAPVAS FAVLAFLVIPLSIYCYKKRKDSKLASTSLVIHPRDPSEDNVVKVVVANNTHGSTSTLT GSGSASRNGSSIGESHVIEAGNLVISVQVLRNVTKNFAPENELGRGGFGVVYKGELDD GTQIAVKRMEAGVITSKALDEFQAEIAVLSKVRHRHLVSLLGYSIEGNERILVYEYMS QGALSKHLFHWKSLKLEPLSWKRRLNIALDVARGMEYLHSLAHQSFIHRDLKSSNILL GDDFKAKVSDFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAA" gene 8897894..8903201 /locus_tag="TCM_022929" /note="dbxref CacaoGD:Thecc1EG022929" mRNA join(8897894..8898030,8898176..8898208,8900159..8900225, 8900551..8900615,8900727..8900846,8900961..8901028, 8901725..8901833,8901912..8901980,8902106..8902163, 8902319..8902554,8902635..8902686,8902785..8903201) /locus_tag="TCM_022929" /product="Ribosomal protein S8e family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s21990.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s21990.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13723t1" CDS join(8897959..8898030,8898176..8898208,8900159..8900225, 8900551..8900615,8900727..8900846,8900961..8901028, 8901725..8901833,8901912..8901980,8902106..8902163, 8902319..8902554,8902635..8902686,8902785..8902852) /locus_tag="TCM_022929" /codon_start=1 /product="Ribosomal protein S8e family protein" /protein_id="EOY08474.1" /db_xref="Phytozome:POPTR_0006s21990.1" /db_xref="TAIR:AT5G06360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O95478" /translation="MNHSEQRARPLWEPRKKNNFLAITGKKKLDDYLILSAPFMKRIS LSPRFNIVESIRRRFTSLSLSVFLPQSKDQSFVAMPQGDYIELHRKRHGYRLDFFERK RKKEARQVHERSAKAQKALGIKGKMIAKKNYAEKALMKKTLAMHEESSNRRKVDDQVQ DGAIPAYLMDRENTTRAKVLSNTIKQKRKEKAGKWEVPIPKVRPVAEDEMFKVLRSGK RKTKQWKRMVTKCTFVGPGFTRKPPKYERFIRPSGLRFTKAHVTHPELKCTFNLDIIG VKKNPNGPMYTSLGVMTKGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCINA VLLV" gene complement(8902947..8906041) /locus_tag="TCM_022930" /note="dbxref CacaoGD:Thecc1EG022930" mRNA complement(join(8902947..8903396,8903565..8904202, 8905227..8905300,8905441..8905613,8905814..8906041)) /locus_tag="TCM_022930" /product="NC domain-containing protein-related isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g10010.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017499t1" /inference="similar to AA sequence:Phytozome:GSVIVT01011152001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.40 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13741t3" mRNA complement(join(8903179..8904202,8905441..>8905625)) /locus_tag="TCM_022930" /product="NC domain-containing protein-related isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g10010.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005106t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s21980.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is medium, protein is partial5; similar to RNA sequence, EST 0.40 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01766t00002; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13741t3" CDS complement(join(8903328..8903396,8903565..8904202, 8905227..8905300,8905441..8905613,8905814..8905876)) /locus_tag="TCM_022930" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG017499t1" /codon_start=1 /product="NC domain-containing protein-related isoform 1" /protein_id="EOY08475.1" /db_xref="Phytozome:GSVIVT01011152001" /db_xref="TAIR:AT5G06370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93V51" /translation="MVVATTHQKERNTAAAALGNMEKSERAGLPQRSLCRYNIRRKKG STFSRSKGGPRLHRITTQFSRLYKGDTNMGLLSNRVAKESLKPGDHIYSWRTAYIYAH HGIYVGNDRVIHFTRHGQEVGTGTVLDLLLLSSGPARTQVHCPTCTPPDEGHGVVSSC LNCFLAGGILYRFEYAVSPALFIAKARGGTCTLAVSDPNDLVVHRAKYLLENGFGCYN VFKNNCEDFAIYCKTGLLVLDQATIGQSGQAISIIGGPLAAVLSTPLRLVTTNIYGMA ATAVGVYCASRYAADIGMRRDAVKVSVEDLTRRLATGLLQICRSAIYYLKNYMLQKLV YSCL" CDS complement(join(8903526..8904202,8905441..>8905624)) /locus_tag="TCM_022930" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005106t1" /codon_start=1 /product="NC domain-containing protein-related isoform 2" /protein_id="EOY08476.1" /db_xref="Phytozome:POPTR_0006s21980.1" /db_xref="TAIR:AT5G06370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93V51" /translation="NSTRRNLKELDFRNGAYAVTTSDVKRAQHFRGVKEDPDCTELQL NSPVCTKEIQTWGCYPTGIYVGNDRVIHFTRHGQEVGTGTVLDLLLLSSGPARTQVHC PTCTPPDEGHGVVSSCLNCFLAGGILYRFEYAVSPALFIAKARGGTCTLAVSDPNDLV VHRAKYLLENGFGCYNVFKNNCEDFAIYCKTGLLVLDQATIGQSGQAISIIGGPLAAV LSTPLRLVTTNIYGMAATAVGVYCASRYAADIGMRRDAVKVSVEDLTRRLATGLLQVI EPQVSAAPAH" mobile_element complement(8906726..8907561) /note="source:scaffold_4_CACTA_0511 13024 13839" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(8907555..8907986) /note="source:INTACT785_F332_scaffold_2-int 1148 1582" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 8908099..8922779 /locus_tag="TCM_022931" /note="dbxref CacaoGD:Thecc1EG022931" mRNA join(8908099..8908618,8909782..8909874,8914073..8915250, 8916913..8916945,8918848..8918935,8919774..8920258, 8920348..8920614,8920791..8921140,8921325..8921855, 8922397..8922462,8922592..8922779) /locus_tag="TCM_022931" /product="UDP-Glycosyltransferase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s07090.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005397t1" /inference="similar to AA sequence:ricco:28726.m000069" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc673t11" mobile_element complement(8908155..8909175) /note="source:INTACT785_F332_scaffold_2-int 10841 11869" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8909172..8909282) /note="source:scaffold_4_CACTA_0511 12923 13039" /mobile_element_type="transposon:TIR/CACTA" mRNA join(8914468..8915250,8918848..8918935,8919774..8920258, 8920348..8920614,8920791..8921140,8921325..8921855, 8922397..8922462,8922592..8922622) /locus_tag="TCM_022931" /product="UDP-Glycosyltransferase superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s07090.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005397t1" /inference="similar to AA sequence:ricco:28726.m000069" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc673t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc673t11" mRNA join(8914469..8915284,8918852..8918935,8919774..8920258, 8920348..8920614,8920791..8921140,8921325..8921855, 8922397..8922462,8922592..8922637) /locus_tag="TCM_022931" /product="UDP-Glycosyltransferase superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s07090.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005397t1" /inference="similar to AA sequence:ricco:28726.m000069" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc682t7_C1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc673t11" CDS join(8914651..8915284,8918852..8918935,8919774..8920258, 8920348..8920614,8920791..8921140,8921325..8921855, 8922397..8922421) /locus_tag="TCM_022931" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:28726.m000069; paralog of Thecc1EG005397t1" /codon_start=1 /product="UDP-Glycosyltransferase superfamily protein isoform 3" /protein_id="EOY08479.1" /db_xref="TAIR:AT3G11670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9S7D1" /translation="MDNATQTTAANSSAFSFISKGWREVRDSADADLQLMKDRANSFK NLAASFDREIENLIHSAAPSFSVPAIRQSSEIDFMKKLQPKISEFRRVYSAPEISRKV MEKWGPRAKIGIDLSRIRSAIVAEVQETEEEDMDGIVEYNKVRKGRRAMFREEGQFGD WEPIRALKTRLREFEKKNSSVEIFGGFKNSEFVEKVKSSLVSFSSAFFLVEIPPLDVP ELLAYLVRQSGPLLDQLGVRKDLCDKIVEGLCSKRKNQLVLRSLAGGEPPTVDNDKTN DELDLRIASVLQSTGHCYEGGFWTDFMKHDDSDGKRNVAIVTTASLPWMTGTAVNPLF RAAYLAKSAKQNVTLLVPWLCRSDQELVYPSNLTFSSPEEQENYIRNWLEERIGFKAD FKISFYPGKFSKERRSIIPAGDTSQFISSKEADIAILEEPEHLNWYHHGKRWTDKFNH VVGIVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCHKVLRLSAATQDLPKSVICN VHGVNPKFLKIGEKVAEERELGQQAFSKGAYFLGKMVWAKGYKELIDLLAKHKDDLDG FKLDVYGNGEDAHEVQSTAKRLDLNLNFLKGRDHADDSLHGYKVFINPSVSDVLCTAT AEALAMGKFVVCADHPSNEFFRSFPNCLTYKTSEDFVAKVKEALANEPQPLSPEQRYN LSWEAATQRFVEYSELDRVLNNEHNGAKLRRSNGKLIAKSVSMPSLSEMVDGGLAFTH YCLTGNEFLRLCTGAIPGTRDYDKQHCKDLHLLPPQVENPIYGCLLSPEDI" CDS join(8914651..8915250,8916913..8916945,8918848..8918935, 8919774..8920258,8920348..8920614,8920791..8921140, 8921325..8921855,8922397..8922421) /locus_tag="TCM_022931" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28726.m000069; paralog of Thecc1EG005397t1" /codon_start=1 /product="UDP-Glycosyltransferase superfamily protein isoform 1" /protein_id="EOY08477.1" /db_xref="TAIR:AT3G11670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9S7D1" /translation="MDNATQTTAANSSAFSFISKGWREVRDSADADLQLMKDRANSFK NLAASFDREIENLIHSAAPSFSVPAIRQSSEIDFMKKLQPKISEFRRVYSAPEISRKV MEKWGPRAKIGIDLSRIRSAIVAEVQETEEEDMDGIVEYNKVRKGRRAMFREEGQFGD WEPIRALKTRLREFEKKNSSVEIFGGFKNSEFVEKVKSSLKAICKEPHESKEVPPLDV PELLAYLVRQSGPLLDQLGVRKDLCDKIVEGLCSKRKNQLVLRSLAGGEPPTVDNDKT NDELDLRIASVLQSTGHCYEGGFWTDFMKHDDSDGKRNVAIVTTASLPWMTGTAVNPL FRAAYLAKSAKQNVTLLVPWLCRSDQELVYPSNLTFSSPEEQENYIRNWLEERIGFKA DFKISFYPGKFSKERRSIIPAGDTSQFISSKEADIAILEEPEHLNWYHHGKRWTDKFN HVVGIVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCHKVLRLSAATQDLPKSVIC NVHGVNPKFLKIGEKVAEERELGQQAFSKGAYFLGKMVWAKGYKELIDLLAKHKDDLD GFKLDVYGNGEDAHEVQSTAKRLDLNLNFLKGRDHADDSLHGYKVFINPSVSDVLCTA TAEALAMGKFVVCADHPSNEFFRSFPNCLTYKTSEDFVAKVKEALANEPQPLSPEQRY NLSWEAATQRFVEYSELDRVLNNEHNGAKLRRSNGKLIAKSVSMPSLSEMVDGGLAFT HYCLTGNEFLRLCTGAIPGTRDYDKQHCKDLHLLPPQVENPIYGCLLSPEDI" CDS join(8914651..8915250,8918848..8918935,8919774..8920258, 8920348..8920614,8920791..8921140,8921325..8921855, 8922397..8922421) /locus_tag="TCM_022931" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28726.m000069; paralog of Thecc1EG005397t1" /codon_start=1 /product="UDP-Glycosyltransferase superfamily protein isoform 2" /protein_id="EOY08478.1" /db_xref="TAIR:AT3G11670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9S7D1" /translation="MDNATQTTAANSSAFSFISKGWREVRDSADADLQLMKDRANSFK NLAASFDREIENLIHSAAPSFSVPAIRQSSEIDFMKKLQPKISEFRRVYSAPEISRKV MEKWGPRAKIGIDLSRIRSAIVAEVQETEEEDMDGIVEYNKVRKGRRAMFREEGQFGD WEPIRALKTRLREFEKKNSSVEIFGGFKNSEFVEKVKSSLEVPPLDVPELLAYLVRQS GPLLDQLGVRKDLCDKIVEGLCSKRKNQLVLRSLAGGEPPTVDNDKTNDELDLRIASV LQSTGHCYEGGFWTDFMKHDDSDGKRNVAIVTTASLPWMTGTAVNPLFRAAYLAKSAK QNVTLLVPWLCRSDQELVYPSNLTFSSPEEQENYIRNWLEERIGFKADFKISFYPGKF SKERRSIIPAGDTSQFISSKEADIAILEEPEHLNWYHHGKRWTDKFNHVVGIVHTNYL EYIKREKNGALQAFFVKHINNWVTRAYCHKVLRLSAATQDLPKSVICNVHGVNPKFLK IGEKVAEERELGQQAFSKGAYFLGKMVWAKGYKELIDLLAKHKDDLDGFKLDVYGNGE DAHEVQSTAKRLDLNLNFLKGRDHADDSLHGYKVFINPSVSDVLCTATAEALAMGKFV VCADHPSNEFFRSFPNCLTYKTSEDFVAKVKEALANEPQPLSPEQRYNLSWEAATQRF VEYSELDRVLNNEHNGAKLRRSNGKLIAKSVSMPSLSEMVDGGLAFTHYCLTGNEFLR LCTGAIPGTRDYDKQHCKDLHLLPPQVENPIYGCLLSPEDI" mobile_element 8930926..8932371 /note="source:INTACT85_F9_scaffold_4-int 1 1452" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8933112..8933764 /note="source:CACAO_M_S_E52921_F60_scaffold_5 18459 19111" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8933767..8936553 /note="source:CACAO_M_S_E52780_F233_scaffold_5 1 2787" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8936554..8937079 /note="source:CACAO_M_S_E52921_F60_scaffold_5 19109 19639" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8940921..8941219) /note="source:CACAO_M_E58819_F24_scaffold_9 794 1083" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8941216..8941715 /note="source:INTACT167_F5_scaffold_2-int 5193 5691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8947583..8950415 /note="source:CACAO_M_E35005_F15_scaffold_5 1 2833" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8950416..8950688) /note="source:scaffold_9_CACTA_0929 5657 5930" /mobile_element_type="transposon:TIR/CACTA" mobile_element 8950689..8952137 /note="source:INTACT85_F9_scaffold_4-int 4 1445" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8953490..8953678 /note="source:CACAO_M_E52239_F256_scaffold_7 8325 8503" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8953533..8953947) /note="source:CACAO_M_E45017_F15_scaffold_6 8016 8428" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8954051..8955937 /note="source:CACAO_M_E56665_F15_scaffold_8 317 2212" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8956370..8956641 /note="source:CACAO_M_E56665_F15_scaffold_8 2648 2918" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8956642..8957747 /note="source:CACAO_M_E13363_F273_scaffold_3 1 1111" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8957745..8958064) /note="source:CACAO_M_S_E64023_F13_scaffold_5 18514 18833" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8958952..8959477) /note="source:INTACT616_F52_scaffold_1-int 11199 11716" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8959710..8959795) /note="source:CACAO_M_S_E89664_F15_scaffold_8 7472 7545" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8959722..8959821 /note="source:INTACT709_F15_scaffold_9-int 2907 2999" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8961764..8962810 /note="source:CACAO_M_E5899_F5_scaffold_2 19648 20667" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8963607..8964487 /note="source:CACAO_M_E5899_F5_scaffold_2 21827 22697" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8965687..8966657 /note="source:CACAO_M_S_E51867_F7_scaffold_4 9889 10860" /mobile_element_type="retrotransposon:LTR/Gypsy" assembly_gap 8967250..8977249 /estimated_length=10000 /gap_type="between scaffolds" mobile_element 8977250..8979545 /note="source:CACAO_M_E5499_F15_scaffold_2 464 2755" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8979547..8980561 /note="source:INTACT95_F143_scaffold_9-int 5377 6386" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8980662..8981659 /note="source:CACAO_M_S_E51867_F7_scaffold_4 1962 2960" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(8982272..8983495) /locus_tag="TCM_022935" /note="dbxref CacaoGD:Thecc1EG022935" mRNA complement(8982272..8983495) /locus_tag="TCM_022935" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.99 coverage" mobile_element complement(8983056..8983165) /note="source:INTACT189_F49_scaffold_5-int 15547 15658" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(8983135..8983374) /locus_tag="TCM_022935" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08480.1" /translation="MSVNRDVATVVMGPMEVPGRDTLLHVLSIVLKFFYEFLFKDDSW FLKTCNMNTFMISWCTYMFSNLQNLLKDGKLFINA" mobile_element 8983311..8986141 /note="source:CACAO_M_E35024_F15_scaffold_5 1 2831" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8986377..8987612) /note="source:INTACT189_F49_scaffold_5-int 13846 15044" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8987639..8988461 /note="source:CACAO_M_E33872_F33_scaffold_4 1 825" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8988562..8997086 /note="source:INTACT218_F33_scaffold_9-int 2526 9754" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(8997003..8997143) /note="source:INTACT189_F49_scaffold_5-int 13689 13834" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 8999493..9008437 /note="source:CACAO_M_S_E17021_F51_scaffold_3 1 11651" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9008430..9010014 /note="source:CACAO_M_S_E85177_F5_scaffold_7 17613 19138" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9010124..9011362 /note="source:CACAO_M_E52239_F256_scaffold_7 5200 6439" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9011362..9012776 /note="source:CACAO_M_E10603_F306_scaffold_2 11794 13208" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9014994..9015286) /note="source:scaffold_8_CACTA_0859 15426 15721" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9019562..9020572) /note="source:scaffold_8_CACTA_0859 16513 17511" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9020986..9022104 /note="source:CACAO_M_S_E67307_F172_scaffold_6 1 1120" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9022105..9022711) /note="source:CACAO_M_E49857_F85_scaffold_7 23273 23879" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9022712..9025666 /note="source:CACAO_M_E35043_F33_scaffold_5 1 2955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9025578..9025675) /note="source:CACAO_M_E44265_F33_scaffold_5 6519 6616" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9025663..9027020) /note="source:CACAO_M_E49857_F85_scaffold_7 1683 2966" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9027121..9028886 /note="source:CACAO_M_E33422_F33_scaffold_4 344 2109" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9029739..9030234) /note="source:CACAO_M_E50525_F33_scaffold_7 3536 4031" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9030230..9040036) /note="source:INTACT213_F172_scaffold_10-int 1 9816" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9040882..9040999 /note="source:INTACT904F_F49_scaffold_6-int 13758 13880" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9041726..9041829) /note="source:INTACT904F_F49_scaffold_6-int 8737 8839" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9041741..9042268 /note="source:scaffold_2_CACTA_0262 5420 5950" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9042536..9042946 /note="source:scaffold_2_CACTA_0262 6541 6970" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9042947..9046292 /note="source:CACAO_M_E35048_F85_scaffold_5 1 6582" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9046281..9047924 /note="source:scaffold_2_CACTA_0262 6966 8562" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9049040..9050245 /note="source:CACAO_M_S_E122136_F76_scaffold_10 1327 2532" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9051797..9051943 /note="source:CACAO_M_E22348_F13_scaffold_3 7954 8102" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9051798..9051923) /note="source:CACAO_M_E50361_F82_scaffold_7 1 112" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9052046..9052592 /note="source:CACAO_M_S_E4911_F76_scaffold_1 2972 3518" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9057551..9058348) /note="source:CACAO_M_E59744_F15_scaffold_9 7143 7940" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9060521..9061039 /note="source:INTACT1441F_F99_scaffold_9-int 2147 2665" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9061355..9061739) /note="source:CACAO_M_E10278_F15_scaffold_2 4396 4780" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9062013..9064644) /note="source:INTACT51F_F15_scaffold_1-int 1975 4604" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9066142..9066517 /note="source:INTACT901F_F95_scaffold_6-int 12177 12552" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9066776..9066912) /note="source:CACAO_M_S_E5860_F197_scaffold_2 11298 11762" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9066913..9068023 /note="source:CACAO_M_S_E122136_F76_scaffold_10 135 1326" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9067724..9070220 /note="source:CACAO_M_E14081_F316_scaffold_3 3982 6458" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9069493..9070375 /note="source:CACAO_M_S_E4911_F76_scaffold_1 13502 14395" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(9072065..9072681) /locus_tag="TCM_022942" /note="dbxref CacaoGD:Thecc1EG022942" mRNA complement(9072065..9072681) /locus_tag="TCM_022942" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009198t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(9072262..9072486) /locus_tag="TCM_022942" /note="paralog of Thecc1EG009198t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08481.1" /translation="MAVSTMLANIGESSGRNRVLIWWPSHVYMYRRLWSSPCLIARRR PKDPLARAHLFTRVTLNRSDNRPTLESLGL" mobile_element complement(9073526..9074419) /note="source:CACAO_M_S_E5860_F197_scaffold_2 956 1852" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9074830..9074926 /note="source:CACAO_Mariner_E229_scaffold_9 12562 12660" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(9074849..9075194) /note="source:CACAO_M_E58324_F9_scaffold_9 23719 24070" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9075180..9076514 /note="source:CACAO_M_E35061_F333_scaffold_5 1 1335" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9076615..9078008 /note="source:CACAO_M_E35061_F333_scaffold_5 1336 2729" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9078011..9080256 /note="source:INTACT212F_F351_scaffold_3-int 3012 4912" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9080651..9081298) /note="source:CACAO_M_S_E5285_F300_scaffold_1 17254 17965" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9084347..9084476 /note="source:INTACT212F_F351_scaffold_3-int 2387 2514" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9088493..9088622 /note="source:CACAO_M_S_E122136_F76_scaffold_10 18313 18449" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9088911..9089940 /note="source:scaffold_4_CACTA_0495 210 1182" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9090278..9093569 /note="source:CACAO_M_E35063_F82_scaffold_5 1 3292" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9095903..9096853 /note="source:CACAO_M_E35064_F15_scaffold_5 1 951" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9097098..9099004 /note="source:CACAO_M_E35064_F15_scaffold_5 952 2858" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9099091..9099565 /note="source:scaffold_5_CACTA_0613 3147 3580" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9099635..9102924 /note="source:scaffold_5_CACTA_0613 3590 6864" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9102919..9105150 /note="source:CACAO_M_E14113_F106_scaffold_3 16159 18382" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9107052..9107474) /note="source:INTACT39F_F22_scaffold_1-int 5451 5877" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9108633..9109082) /note="source:INTACT39F_F22_scaffold_1-int 3825 4249" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9109528..9110241 /note="source:scaffold_5_CACTA_0611 12424 13134" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9110245..9111660) /note="source:CACAO_M_E22186_F143_scaffold_3 1537 2955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9111661..9114682 /note="source:CACAO_M_E35067_F15_scaffold_5 1 2983" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9114683..9116166 /note="source:CACAO_M_E5899_F5_scaffold_2 12795 14267" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9116172..9116433 /note="source:scaffold_5_CACTA_0613 8009 8274" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9116437..9118627 /note="source:scaffold_5_CACTA_0613 8647 10867" /mobile_element_type="transposon:TIR/CACTA" gene complement(9118544..9121554) /locus_tag="TCM_022947" /note="dbxref CacaoGD:Thecc1EG022947" mRNA complement(join(9118544..9119506,9119786..9119929, 9120105..9120220,9120479..9120751,9120896..9121036, 9121144..9121554)) /locus_tag="TCM_022947" /product="Aluminum activated malate transporter family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s21960.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041248t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s21960.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1445t1" CDS complement(join(9119000..9119506,9119786..9119929, 9120105..9120220,9120479..9120751,9120896..9121036, 9121144..9121429)) /locus_tag="TCM_022947" /note="paralog of Thecc1EG041248t1" /codon_start=1 /product="Aluminum activated malate transporter family protein" /protein_id="EOY08482.1" /db_xref="Phytozome:POPTR_0006s21960.1" /db_xref="TAIR:AT3G11680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SRM9" /translation="MDIESTAQEKARFCGIACGSAKALPDMLKAKVISIAKSIMKLGQ DDPRRLIHSLKVGLALTLVSLLYYARPLYDGFGVSGMWAVLTVVVVFEFTVGGTLSKS LNRGFATFSAGALGIGADYFAGLFGKQGEPIVLGILVFLLATAATFSRFFPRIKARYD YGVLIFILTFSLVAVSGYRVDELVVLAHQRLSTIIMGGATCMLISIFVCPVWAGEDLH RAVASNLEKLASYLEGFGGAYFQYDGSGVVSKDGKSFHQGYKSILNSKNSEESLANFA RWEPGHGRFRLRHPWKHYLKIGALARQCAYQIEAINGCIDSDIQASQEFKSKIEGSCK RMSAECGKALKALATAMKTMTDPSSTNPHVENSKAAMKDLKFALKAASLEDEDFLAIV PAATVASILVEIVKSVEKISEAANELSQLARFKKVEPTVSPEKPQQLLHRGIIQPVLD ADSNDNVVIAIHEISTDSPENEKPGHQVPKPGQRFMEV" gene complement(9121601..9148634) /locus_tag="TCM_022948" /note="dbxref CacaoGD:Thecc1EG022948" mRNA complement(join(9121601..9121788,9137381..9137799, 9138355..9138422,9140160..9140865,9148413..9148634)) /locus_tag="TCM_022948" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.20 coverage" mobile_element complement(9135673..9135731) /note="source:scaffold_5_CACTA_0613 1209 1268" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9135689..9135726 /note="source:CACAO_M_E58819_F24_scaffold_9 15357 15394" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9135727..9135738) /note="source:CACAO_M_E14113_F106_scaffold_3 13798 13846" /mobile_element_type="retrotransposon:LTR/Copia" CDS complement(join(9137709..9137799,9138355..9138422, 9140160..9140558)) /locus_tag="TCM_022948" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08483.1" /translation="MIRFQTYKDVWKEAKKSVNCNTQTETETLKHLIKKALKRCHNAS NQKGQPQRLLIKRYWSYETLNFFSFPSFSINERAEICRNLTRRAAIGWWWCCCFCQHS EKASLNHGFGLQIKYPIKLPIGKSARLSGGNVLSYKLILGWLNLNNWSRPPKARGTWP LYIQKTDRLGRHWRLLCQASSTIAL" mobile_element 9142700..9145837 /note="source:CACAO_M_S_E52855_F7_scaffold_5 1 3138" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9149428..9149634 /note="source:CACAO_M_S_E66657_F76_scaffold_5 3965 4193" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9149704..9150235 /note="source:CACAO_M_S_E66657_F76_scaffold_5 4182 4718" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9150215..9150761 /note="source:CACAO_M_S_E66657_F76_scaffold_5 4823 5362" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9150758..9151190 /note="source:CACAO_M_S_E66657_F76_scaffold_5 5680 6115" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9151317..9151939 /note="source:CACAO_M_S_E66657_F76_scaffold_5 6108 6729" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 9165603..9170864 /locus_tag="TCM_022950" /note="dbxref CacaoGD:Thecc1EG022950" mRNA join(9165603..9166018,9166240..9166351,9166506..9166553, 9166867..9167028,9167153..9167971,9168501..9168874, 9168979..9169039,9169124..9170384) /locus_tag="TCM_022950" /product="BEL1-like homeodomain protein 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29333.m001039.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041235t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s21950.7" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03078t00001; alternateUTRof:Thecc1EG022950t1; inference alignment:Newbler:10:TSA:cgbaL_g03078t00002" mRNA join(9165603..9166018,9166240..9166351,9166506..9166553, 9166867..9167028,9167199..9167971,9168501..9168874, 9168979..9169039,9169124..9170384) /locus_tag="TCM_022950" /product="BEL1-like homeodomain protein 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29333.m001039.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041235t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s21950.7" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03078t00002; inference alignment:Newbler:10:TSA:cgbaL_g03078t00002" mRNA join(9165723..9166012,9166240..9166351,9166506..9166553, 9166867..9167028,9167199..9167971,9168501..9168874, 9168979..9169039,9169124..9170864) /locus_tag="TCM_022950" /product="BEL1-like homeodomain protein 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29333.m001039.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041235t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s21950.7" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3851t3; alternateUTRof:Thecc1EG022950t1; inference alignment:Newbler:10:TSA:cgbaL_g03078t00002" CDS join(9167216..9167971,9168501..9168874,9168979..9169039, 9169124..9169939) /locus_tag="TCM_022950" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG041235t1" /codon_start=1 /product="BEL1-like homeodomain protein 1 isoform 1" /protein_id="EOY08484.1" /db_xref="Phytozome:POPTR_0006s21950.7" /db_xref="TAIR:AT2G35940.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9B3" /translation="MATYFHGNPEIQAPDGLQTLVLMNPAYVQYSDTAPPPANNLVFL NSNSLSPHAPSPHTQQFVGIPLPATSSANQDPSSHDISPLHGLVQRVHYNLYNSIDPS GGARDTPRAQQGLSLSLSSQQHPGYGSQAQAVSGEDMRVSGGSASSGSGVTNGVSGMQ SVLLSSKYLKAAQELLDEVVNVNNTGITKSELAKKGSGNNNNSSKAVGESLAVAGDGS GGGEAGGKRGAELTTAERQEIQMKKAKLISMLDEVDHRYRQYHHQMQIIISSFEQAAG IGSAKTYTALALKTISKQFRCLKDAITGQIRAANKSLGEEDCLGGKIEGSRLKFVDHH LRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTG LTRSQVSNWFINARVRLWKPMVEEMYLEEVKEHEQNGSEDKSSKSQNNEDSASKSTAP EKSPANENHVKSLNSKQDNLTSQNASSMSISTASTSPFAGNVRNQSGFSLIGSSELEG ITQGSPKKPRSTELLQSPSSVPSINIDIKQSEANNEVSMKFGKEGYSFMGTNTNFMGG FGQYPIGEIGRFDAEQFTPRFSGNGVSLTLGLPHCENLSLSGTHQTLLPNPNLQMGRR LDIGEPNEFATINPSAPHSSAAYENISIQNRKRFAAQLLPDFVA" CDS join(9167216..9167971,9168501..9168874,9168979..9169039, 9169124..9169939) /locus_tag="TCM_022950" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG041235t1" /codon_start=1 /product="BEL1-like homeodomain protein 1 isoform 1" /protein_id="EOY08485.1" /db_xref="Phytozome:POPTR_0006s21950.7" /db_xref="TAIR:AT2G35940.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9B3" /translation="MATYFHGNPEIQAPDGLQTLVLMNPAYVQYSDTAPPPANNLVFL NSNSLSPHAPSPHTQQFVGIPLPATSSANQDPSSHDISPLHGLVQRVHYNLYNSIDPS GGARDTPRAQQGLSLSLSSQQHPGYGSQAQAVSGEDMRVSGGSASSGSGVTNGVSGMQ SVLLSSKYLKAAQELLDEVVNVNNTGITKSELAKKGSGNNNNSSKAVGESLAVAGDGS GGGEAGGKRGAELTTAERQEIQMKKAKLISMLDEVDHRYRQYHHQMQIIISSFEQAAG IGSAKTYTALALKTISKQFRCLKDAITGQIRAANKSLGEEDCLGGKIEGSRLKFVDHH LRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTG LTRSQVSNWFINARVRLWKPMVEEMYLEEVKEHEQNGSEDKSSKSQNNEDSASKSTAP EKSPANENHVKSLNSKQDNLTSQNASSMSISTASTSPFAGNVRNQSGFSLIGSSELEG ITQGSPKKPRSTELLQSPSSVPSINIDIKQSEANNEVSMKFGKEGYSFMGTNTNFMGG FGQYPIGEIGRFDAEQFTPRFSGNGVSLTLGLPHCENLSLSGTHQTLLPNPNLQMGRR LDIGEPNEFATINPSAPHSSAAYENISIQNRKRFAAQLLPDFVA" CDS join(9167216..9167971,9168501..9168874,9168979..9169039, 9169124..9169939) /locus_tag="TCM_022950" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG041235t1" /codon_start=1 /product="BEL1-like homeodomain protein 1 isoform 1" /protein_id="EOY08486.1" /db_xref="Phytozome:POPTR_0006s21950.7" /db_xref="TAIR:AT2G35940.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9B3" /translation="MATYFHGNPEIQAPDGLQTLVLMNPAYVQYSDTAPPPANNLVFL NSNSLSPHAPSPHTQQFVGIPLPATSSANQDPSSHDISPLHGLVQRVHYNLYNSIDPS GGARDTPRAQQGLSLSLSSQQHPGYGSQAQAVSGEDMRVSGGSASSGSGVTNGVSGMQ SVLLSSKYLKAAQELLDEVVNVNNTGITKSELAKKGSGNNNNSSKAVGESLAVAGDGS GGGEAGGKRGAELTTAERQEIQMKKAKLISMLDEVDHRYRQYHHQMQIIISSFEQAAG IGSAKTYTALALKTISKQFRCLKDAITGQIRAANKSLGEEDCLGGKIEGSRLKFVDHH LRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTG LTRSQVSNWFINARVRLWKPMVEEMYLEEVKEHEQNGSEDKSSKSQNNEDSASKSTAP EKSPANENHVKSLNSKQDNLTSQNASSMSISTASTSPFAGNVRNQSGFSLIGSSELEG ITQGSPKKPRSTELLQSPSSVPSINIDIKQSEANNEVSMKFGKEGYSFMGTNTNFMGG FGQYPIGEIGRFDAEQFTPRFSGNGVSLTLGLPHCENLSLSGTHQTLLPNPNLQMGRR LDIGEPNEFATINPSAPHSSAAYENISIQNRKRFAAQLLPDFVA" gene complement(9171598..9174649) /locus_tag="TCM_022951" /note="dbxref CacaoGD:Thecc1EG022951" mRNA complement(join(9171598..9173208,9173608..9173669, 9174570..9174649)) /locus_tag="TCM_022951" /product="Binding protein, putative" /inference="alignment:exonerate-protein:2:frave:gene18313" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015681t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s21940.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3735t3" CDS complement(9171901..9173199) /locus_tag="TCM_022951" /note="paralog of Thecc1EG015681t1" /codon_start=1 /product="Binding protein, putative" /protein_id="EOY08487.1" /db_xref="Phytozome:POPTR_0006s21940.1" /db_xref="TAIR:AT3G05675.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SDI5" /translation="MDAPSRIGDRSTSDVVVRLRTQEGRDEWIYCHSDILVEKSKYFA DRLSENWPTCQILDSRNCVEVYCQESDFDHHVNVLRLLYVVIHGSVDDLWNGVRNALG ILQVAIELGCPQIVTACVNYLEAVPWEESEEEEILRIIPGMGAQVEPILARLQPVNPS AIHGIFISTLRFATSSPPSLMNDLKSSAQEQLEYMVTEDDDAPLLIADDDIKSEVKDC IGRLFSRFNNLLEAFLCEPTESVGEDGRMKSFQSYLGDFLWACQLLAKLEIMREFVNS WVDASDKIVKVMQPSPTVEIIETKLKVVEVVAKVLESIGYGTVILPTAKRLHMVKVWL PFVRVTKPLIDSVTTNDEDSLAFKLDGELWQSLESTFVSIILALPSADQAEILTEWLG NEHVRYPDLTEAFEVWCYRSKVAKRRLPFFGDNHCMTNTL" mobile_element 9178666..9178728 /note="source:CACAO_M_E5899_F5_scaffold_2 20726 20787" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9182162..9185144) /note="source:CACAO_M_E790_F143_scaffold_1 1 2972" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9195228..9198163 /note="source:CACAO_M_S_E118781_F72_scaffold_9 1 2934" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9199978..9200606 /note="source:CACAO_M_S_E5720_F273_scaffold_2 1 630" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9200708..9202236 /note="source:CACAO_M_E24716_F273_scaffold_4 637 2167" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9202162..9202246) /note="source:CACAO_M_E11919_F85_scaffold_2 1146 1231" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9202563..9202979) /note="source:CACAO_M_E12330_F85_scaffold_3 319 734" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9205206..9219184 /note="source:INTACT642F_F365_scaffold_5-int 1 13979" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9219285..9226203 /note="source:INTACT642F_F365_scaffold_5-int 8513 20108" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(9222733..9223293) /locus_tag="TCM_022958" /note="dbxref CacaoGD:Thecc1EG022958" mRNA complement(9222733..9223293) /locus_tag="TCM_022958" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023068t1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.36 coverage" CDS complement(9222813..9223271) /locus_tag="TCM_022958" /note="paralog of Thecc1EG023068t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08488.1" /translation="MTTVEVDQHLKKKGDTECLPWSFLNGYIKKHMEDEQGLLAFAMV IYGLVVFPKVLGHVEVSVIDFFDQVTRSINPTPSILVETFRSLNFCQRKGEGRFIRCA QLLTIWVKSHFECKESKFRKPYLFASYPIFEFCESVWPDCKRKEEWVTNF" mobile_element 9226746..9227402 /note="source:INTACT642F_F365_scaffold_5-int 2350 2991" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9228598..9229717 /note="source:CACAO_M_E69532_F143_scaffold_9 1 1117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9229701..9232534) /note="source:CACAO_M_E14113_F106_scaffold_3 7697 10516" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9232536..9235421 /note="source:CACAO_M_E13376_F33_scaffold_3 1 2938" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9235422..9235485) /note="source:CACAO_M_E14113_F106_scaffold_3 7637 7700" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9235521..9237413 /note="source:CACAO_M_E578_F143_scaffold_1 1101 2995" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 9239967..9255324 /locus_tag="TCM_022960" /note="dbxref CacaoGD:Thecc1EG022960" mRNA join(9239967..9241638,9243011..9243257,9255268..9255324) /locus_tag="TCM_022960" /product="Plant U-box 24" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s21920.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041223t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s21920.1" /note="quality class is strong, express is medium, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.43 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc5244t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc5029t1" CDS 9240363..9241589 /locus_tag="TCM_022960" /note="paralog of Thecc1EG041223t1" /codon_start=1 /product="Plant U-box 24" /protein_id="EOY08489.1" /db_xref="Phytozome:POPTR_0006s21920.1" /db_xref="TAIR:AT3G11840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HQ77" /translation="MDDIEVPKYFVCPISLQIMKDPVTAITGITYDRESIEQWLLKGK NTSCPVTQQPLPRDSDLTPNHTLRRLIQAWCTENASLGVDRIPTPKPSVDKFHFRKLI KELDKHPDSKMEALRELDLLAAKNERNRKYMVEAGVPKAMLSFIVNCFKEDCVNGLEE ALSVLSLIRIPSAEANLSLNEKDEIIKSLIWVLGCESKTQVTVKSHAALVLKTIIETA SSILLERLEPQFFETAVGVLTQRSRVTQQGMNAALHVLLDVCPWGRNRLMMVESGAVS ALIELELGSPERRTTELILGILFHLCSCADGRAEFLSHKGGVAVVTKRIMRVSPTADD RAVLILSLISKFSATNLVLHEMLEVGTVTKLCMLLQGDGATYLKDKAMEILRSHSDEW QKFRCINITLLTRYIK" gene complement(9245001..9248867) /locus_tag="TCM_022961" /note="dbxref CacaoGD:Thecc1EG022961" mRNA complement(join(9245001..9245332,9247399..9247492, 9248418..9248460,9248534..9248867)) /locus_tag="TCM_022961" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS complement(join(9245188..9245332,9247399..9247492, 9248418..9248460,9248534..9248629)) /locus_tag="TCM_022961" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08490.1" /translation="MGFTPYFSNLNGVLWDKVRCNMCKMFLKVEKLTYLFTSSHLQSP NEVGHPISPSSCASHHIVHIARHPIYLPHHRHHRKKQGRVGRKMKKIDLEKVYDRLKW EFIHDTLLEVRIPTKIIDVLLRS" mobile_element 9245575..9245753 /note="source:scaffold_3_CACTA_0382 10027 10204" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9245889..9246064) /note="source:CACAO_M_E14113_F106_scaffold_3 5160 5337" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9246085..9247596) /note="source:CACAO_M_E5899_F5_scaffold_2 20503 22030" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9247489..9247631) /note="source:INTACT649F_F368_scaffold_5-int 12140 12283" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9247645..9247699 /note="source:CACAO_M_S_E34046_F60_scaffold_4 10926 10979" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9249240..9249606) /note="source:CACAO_on_S_E390_scaffold_9 2503 2850" /mobile_element_type="transposon:TIR/Mutator" mobile_element 9250652..9250750 /note="source:CACAO_M_E49195_F17_scaffold_6 1151 1249" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9254854..9259238 /note="source:INTACT358_F204_scaffold_9-int 1 4378" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9259592..9261105 /note="source:CACAO_M_E49195_F17_scaffold_6 1 1520" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9261477..9261854 /note="source:INTACT172_F47_scaffold_2-int 1 380" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9261853..9262569) /note="source:INTACT649F_F368_scaffold_5-int 6970 7686" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9264563..9265412 /note="source:CACAO_M_E5899_F5_scaffold_2 21833 22689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9265414..9265721) /note="source:CACAO_M_S_E33139_F368_scaffold_4 3841 4191" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9265722..9269049 /note="source:CACAO_M_E35091_F82_scaffold_5 1 3328" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9269050..9272031 /note="source:INTACT172_F47_scaffold_2-int 5955 8923" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9270081..9272032) /note="source:INTACT649F_F368_scaffold_5-int 930 2856" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9273059..9274095 /note="source:CACAO_M_E14113_F106_scaffold_3 11765 12774" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(9274044..9274997) /locus_tag="TCM_022965" /note="dbxref CacaoGD:Thecc1EG022965" mRNA complement(join(9274044..9274344,9274509..9274997)) /locus_tag="TCM_022965" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006879t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.98 coverage" CDS complement(join(9274104..9274344,9274509..9274783)) /locus_tag="TCM_022965" /note="paralog of Thecc1EG006879t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08491.1" /translation="MAVEVSLQKNLTPTIVDDKTRKKVKLREESCSDLSGDGSFVMHD NLSFKEVLMLSRDDVLFSEDNICPDEEIENVNREADSSETEENPDDFRYGVVDLDDES YLVKFMEESDYLRVLLDGPWMVPGHYLMVNPWTPTYMRGSNDLSDLSVVAAWVRFLEM PLHYYHKSIIR" gene 9279649..9281576 /locus_tag="TCM_022966" /note="dbxref CacaoGD:Thecc1EG022966" mRNA 9279649..9281576 /locus_tag="TCM_022966" /product="Plant U-box 23" /inference="alignment:exonerate- protein:2:ricco:29333.m001045" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041222t1" /inference="similar to AA sequence:ricco:29333.m001042" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3721t1" CDS 9280003..9281238 /locus_tag="TCM_022966" /note="dbxref ricco:29333.m001042; paralog of Thecc1EG041222t1" /codon_start=1 /product="Plant U-box 23" /protein_id="EOY08492.1" /db_xref="TAIR:AT2G35930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GHM1" /translation="MDEIDVPPFFICPISLEIMKDPVTVSTGITYDRESIEKWLFSGK NTTCPVTKQVITDCDLTPNHTLRRLIQSWCMLNASHGIERIPTPKPPISKAQITKLLN DATSPHQQISCLRRLQSIASENTTNKRCMESSGAVEFLASIVSNYDFTAAEESFDNEF ESTRPTDEALSILYNLQLSEAALKNLMRKNGDFIVSLTRVMQRGSYESRAYAILLLKS MLEIADPMQLISLRPELFVELIQVLRDQISQQASKATLQLLVSISPWGRNKIKAAEAG AVSVLIDLLLDSSERRACEMILTVLDALCGCAEGRAELLRHGAGLAIVSKKILRVSLV ASERAVRILLSISKFCATSNVLHEMLQLGVVAKLCLVLQVDCGYKTKERAREVLKLHA KAWKNSPCIPINLLSSYPA" gene complement(9285273..9286527) /locus_tag="TCM_022967" /note="dbxref CacaoGD:Thecc1EG022967" mRNA complement(9285273..9286527) /locus_tag="TCM_022967" /product="F-box family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s21700.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s21700.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.18 coverage" CDS complement(9285313..9286182) /locus_tag="TCM_022967" /codon_start=1 /product="F-box family protein, putative" /protein_id="EOY08493.1" /db_xref="Phytozome:POPTR_0006s21700.1" /db_xref="TAIR:AT3G52440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9K8" /translation="MVMERGWKPSVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKG CRRYWTKGGSLRNVPVGGGCRKNRRGKSLRLPTDGVPSKGLSCGVLPPESIGHSYGNK VNASAESNSSSAMSDGSQIDLALVYANFLNQHAENKSGFEVSDQLPSEFDPSLEFSSL SNTNMDSSIQLTEENGLIGCFTRSDLSTENHLSNNDRAYYSGFESVHKHQDRVQQCTC QETSNYALPPLPGDDLSSQETPWTNSNSSMSQTLLATQEPVLGPEVHDPNLLFGNWSL FDLSGDDAFFRIH" gene complement(9287090..9292234) /locus_tag="TCM_022968" /note="dbxref CacaoGD:Thecc1EG022968" mRNA complement(join(9287090..9289676,9290263..9290904, 9291787..9292234)) /locus_tag="TCM_022968" /product="Leucine-rich repeat protein kinase family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014122t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s07270.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.46 coverage" CDS complement(join(9287377..9289676,9290263..9290350)) /locus_tag="TCM_022968" /note="paralog of Thecc1EG014122t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein, putative" /protein_id="EOY08494.1" /db_xref="Phytozome:POPTR_0015s07270.1" /db_xref="TAIR:AT1G74360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GT54" /translation="MERRGEGSSYSRFLFLKMMVVMDVLISSKAGTAMSEHSLDTDKE ILLNLKSFLEERNPINRGGYEKWNQTSSNPCDWYGISCSLDGARVTGIDLSDNRISGE MFQSFSALNQLRYLDLSKNTLQGKIPDDLSRCHNLVYLNLSHNLLEGALNLAGLTSLE KLDLSTNRFLGDLRLSFPAICNNLVVANLSINNFTGRIDNCFDGCKNLQYLDLSANDF TGYLWTGFSRLAEFSVSENYITGPISASSFEENCSLVALDLSENNIQGEVPMQISNCN NLVVLNLWGNNFIGPIPLQIGSILTLEGLLLGGNSFSRVIPETLLNLKNLAFLDLSRN NFGGEIQDIFGRFTQLKYLVLQGNLYTGGIVSSGIHRLPNIIRLDLSYNNFSSYLPVE ISQMLSLKFLILAYNQFNGTIPPEYGNLSQLQALDLSNNGLIGSIPPALGNLSSLLWL MLANNSLTGEIPRDIGNCGSLFWVNLANNQLSGAVPHELTNIGRNASPIFESNRQSDH MIAGPSECLMTQRLLSVDGYTPFGSIYTIPTRKICRRMWNQLLKGYGFFPVCAMGSSV RRYQISGYIQLSGNQLTGEVPQDIGKMKNFSVLQLGSNEFYGKLPTEIGNLPVIVLNI SGNRFSGQIPIEVGNMKCLRSLDLSRNNFSGTMPMQLNNLTELSNFNISFNPLLTGRI PERGQLATFGKESFLGNPLLHIPLFDLDDQLPPPPPPSNWQGENEIGMDGDGLNSGNG FSWEALLTGYGCGMVFGVAVFYITFRKGKPNWFVTMVDGIHQWKARKRNASRRGD" gene complement(9293222..9313813) /locus_tag="TCM_022969" /note="dbxref CacaoGD:Thecc1EG022969" mRNA complement(join(9293222..9294162,9294792..9294863, 9295585..9296397,9296540..9297853,9297930..9298113, 9299073..9299401,9299531..9299600,9299721..9299935, 9300028..9300081,9300168..9300323,9300478..9300693, 9302086..9302302,9302393..9302460,9302909..9303042, 9304811..9304910,9304986..9305464,9305564..9305630, 9305795..9305843,9305930..9306015,9306130..9306311, 9306400..9306541,9307238..9307420,9307529..9307633, 9307737..9308105,9308233..9308892,9309393..9309516, 9310452..9310540,9310786..9311284,9313283..9313813)) /locus_tag="TCM_022969" /product="Embryo defective 2016, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01020162001" /inference="similar to AA sequence:Phytozome:GSVIVT01020162001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc687t1" CDS complement(join(9294142..9294162,9294792..9294863, 9295585..9296397,9296540..9297853,9297930..9298113, 9299073..9299401,9299531..9299600,9299721..9299935, 9300028..9300081,9300168..9300323,9300478..9300693, 9302086..9302302,9302393..9302460,9302909..9303042, 9304811..9304910,9304986..9305464,9305564..9305630, 9305795..9305843,9305930..9306015,9306130..9306311, 9306400..9306541,9307238..9307420,9307529..9307633, 9307737..9308105,9308233..9308892,9309393..9309516, 9310452..9310540,9310786..9310860)) /locus_tag="TCM_022969" /codon_start=1 /product="Embryo defective 2016, putative" /protein_id="EOY08495.1" /db_xref="Phytozome:GSVIVT01020162001" /db_xref="TAIR:AT3G05680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4J8G6" /translation="MGRPESCVLFSQTFVHTHLDEYVDEVLFAEPVVITACEFLEQNA SSASQAVSLVGATSPPSFALEVFVQCEGETRFRRLCQPFLYTHSSSNVLEVEAVVTNH LVVRGSYRSLSLVIYGNTAQDLGQFNIEFDDSSLPDLVSSADGKLEDLPLALRTINRT FEESLCSLNVISLPVVKLDLSVEVNQLLQLMLKILELANVGYAVHKVLSTVASAASSL ISFDLDSNAIHQKYLMSERNKDFKELDHGISEARKNLLELYEALQYKSMNGSSESLTE CSFMESEADLASSKQLVEMLLPYFNFNRSSSSFGHHQLSESKNVILGLNVALFLCSSK ESCFHFVNCGGMDQLAYLLDHDMQKSTAITLLLLGVIEQATRHSVGCEGFLGWWPRED ENIPSGTSDGYSHLLKLLLQKPRHDIASLATYVLHRLRFYEVVSRYEYEVLSILGGLS AAAKGTSVASNKLVGVGSLLKKLLHLVKSHGRIEDPSPVAHASSFLILGQTDILVSYK ATSGLIASSNCCFSNWEIDSHLLALLKDRGFLPLSAALLSTTILHSEAEDVVNISMEI VSSIGSIIVSFLFCRSGLVFLLHQPELTATLIHALKGADAMSKEECVPLRYASVLISK GFTCSPQEVGIIVETHLRVVNAIDRLLSSTPQSEEFLWVLWELCGLARSDCGRQALLA LSFFPEVLSILIEALHSVKETEPAIKNSGAAPLNLAILHSAAEIVEVIVTDSTATSLS SWIGHAMELHKALHSSPGSNRKDAPTRLLEWIDAGLVYHKNGAIGLLRYAAVLASGGD AHLTSTNILVSDLTDVVDNVIGESSNASDINVMENLGGIISLKSFDGVSLRDSSIAQL TTAFRILAFISENPTVAAALYDEGAIAVIYVVLVNCSFMLERSSNNYDYLVDEGTECN STSDLLLERNREQSLVDLLVPSLVLLITLLQKLQEANEQHRNTKLMNALLRLHREVSP KLAACAADLSSPYPDSALGFEAVCHLVVSALAYWPVYGWTPGLFHSLLASVQATSSLA LGPKETCSLMCLLNDMFPEEGVWLWKNGMPLLSALRSLAIGTLLGPLKERQVDWYLER GHLEKLLNQLMPQLDKIAQIIQHYAISALVVIQDMLRVFIIRIACQKAEHASKLLRPI LSWIHDHISDLSSPSDTDAYKVYRFLDFLASLLEHPYSKAVLLGEGFSQILKRVLESC FVATDSDGKQISDCGNSASCGFTLINWCIPVFQSISLLCSSRTFSQNNGRHDMHKFDG LSPKECLLFINQLLKFCQVLPVGKELVSCLQAFKDLGSCAEGRSAFMSALLHGGNSSG GALESESGHEKNGNFHFQNESELRKSPPLLCCWKKLLRSVDSKDSSLAYAIEAVNALS LGSLCFCMDGKSLNMNAVVALKFLFGFPDDMAGIGGLPEENINYIQEFSTLLSSRIIN DDYQSPSDMHISMCQVSESVKSLLLLFQISTGTVKVDDTILNEILSLPQNDVQVPLRI HQMAQGNGGKADDDLYLGGFEDKFSWELPETLPDRLPQTALPTRRKLQPADSSTRRAR GDNSVTEITNPNAFSRGLGPSTVPPGTTRRDTFRQRKPNTSRPPSMHVDDYVARERSV DGVTNSNAIAVQRVGSSGGRPPSIHVDEFMARQRERQNPAASVAETAAQSKNAAPING ADNEKVNKSKQLKTDLDDDLHGIDIVFDGEESETDDKLPFPQPDDNLQQPASVIVEQS SPHSVVEETESDVNGSSQFSHMGTPLASNVDENAHSEFSSRMSVSRPEMPLTREPSVS SDKKFFEKSEDSKNAISIKNSSRFDSAAGANSSGFSAPVYSNTPPTSVQLPADSRITP QNFYPKSSPQYASNIPGAVGSRGMYEQKVLPNQPPLPPMPPPSAIPPGQSDYLSAVSG SPSLLQSSLSVSDSKFMRTSMSSPSGNTRPPPPLPSTPPPFASSPYNLASVNASTSQP SVYNHSGMGKTELPQSSIGPTIDARLPASAAGLTSYPPPLMQSLVFNRPASIPITPYG STPAQQQGENPPSMLQNPSIPQSSIQSMHSLAQLQPLQQLQRPLQPAQHLRPSMQSSQ QLDQGVSLQTPVQMQMQSLQMLQQSHVSPVNPYHQSQQQEFSPAQQQLQVELSQPQVL QQGGGASQQQQDSGMSLHEYFQSPEAIQSLLRDREKLCQLLEQHPKLMQMLQEKLGQL " mobile_element 9313102..9313718 /note="source:CACAO_M_S_E89591_F3_scaffold_8 1 615" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9313719..9315639) /note="source:CACAO_M_E69532_F143_scaffold_9 1065 2994" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9315640..9321601 /note="source:INTACT643F_F366_scaffold_5-int 1 6138" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9321585..9322653) /note="source:CACAO_M_E11630_F143_scaffold_2 1 1067" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9322651..9329442) /note="source:CACAO_M_E12058_F3_scaffold_2 856 7606" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9322654..9322692 /note="source:INTACT139F_F15_scaffold_2-int 2844 2888" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9329443..9330395 /note="source:CACAO_M_E49857_F85_scaffold_7 1 985" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9330501..9330881 /note="source:CACAO_M_E49857_F85_scaffold_7 996 1379" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9330916..9331150 /note="source:CACAO_M_S_E145294_F15_scaffold_10 1 235" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9333206..9334620) /note="source:INTACT454F_F360_scaffold_4-int 4180 5560" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9334721..9338636 /note="source:INTACT139F_F15_scaffold_2-int 3611 7526" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9338737..9339499 /note="source:INTACT139F_F15_scaffold_2-int 7588 8349" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9340036..9341935) /note="source:CACAO_M_E33870_F15_scaffold_4 1 1898" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9341936..9343846 /note="source:CACAO_M_E49857_F85_scaffold_7 21955 23879" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9343847..9344374 /note="source:INTACT319_F3_scaffold_1-int 827 1374" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9346200..9346268 /note="source:INTACT674_F296_scaffold_6-int 5903 5971" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9346814..9348557) /note="source:CACAO_M_S_E66657_F76_scaffold_5 4449 6116" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9348558..9351461 /note="source:CACAO_M_E35100_F86_scaffold_5 1 2904" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9351823..9352941 /note="source:INTACT667_F51_scaffold_5-int 8137 9241" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9353271..9353807 /note="source:CACAO_M_E51617_F15_scaffold_7 1 537" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9354244..9355853) /note="source:INTACT51F_F15_scaffold_1-int 9159 10769" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9356200..9356867) /note="source:CACAO_M_E23859_F15_scaffold_4 1 666" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9356868..9358270 /note="source:INTACT667_F51_scaffold_5-int 10038 11232" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9358793..9359092) /note="source:CACAO_M_S_E4911_F76_scaffold_1 1 297" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9363292..9366392 /note="source:CACAO_M_E35104_F15_scaffold_5 1 3101" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9366393..9366431) /note="source:CACAO_M_E52239_F256_scaffold_7 8331 8358" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9368152..9369319) /note="source:INTACT607_F3_scaffold_4-int 12672 13859" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9369320..9372255 /note="source:CACAO_M_S_E52897_F172_scaffold_5 1 2936" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9372256..9375713) /note="source:CACAO_M_E12058_F3_scaffold_2 3622 7098" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9375705..9376027) /note="source:CACAO_M_E22186_F143_scaffold_3 2641 2963" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9376029..9377800) /note="source:CACAO_M_E43672_F60_scaffold_5 10501 12293" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9377792..9378293) /note="source:CACAO_M_E33986_F15_scaffold_4 2380 2882" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9379322..9380675) /note="source:CACAO_M_S_E66657_F76_scaffold_5 765 2119" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9380564..9381929 /note="source:CACAO_M_S_E16543_F3_scaffold_2 5318 6606" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9381821..9381943) /note="source:CACAO_M_E12058_F3_scaffold_2 8093 8212" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9381991..9383468 /note="source:INTACT319_F3_scaffold_1-int 9363 10837" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 9383539..9384068 /locus_tag="TCM_022974" /note="dbxref CacaoGD:Thecc1EG022974" mRNA 9383539..9384068 /locus_tag="TCM_022974" /product="Kinase, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007342t1" /inference="similar to AA sequence:ricco:29333.m001049" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS 9383605..9383931 /locus_tag="TCM_022974" /note="dbxref ricco:29333.m001049; paralog of Thecc1EG007342t1" /codon_start=1 /product="Kinase, putative" /protein_id="EOY08496.1" /db_xref="TAIR:AT5G10530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SDJ4" /translation="MRRNVGKFIGWCLRENEFFLVYEYIPNNNLESHLHGNETSLPWY IWYKVAKNLVSAIQYLHEGAEKCAIHRDIKSENILLDKYFIAKLGDFGIAKLKGLRTS QTSVGP" gene complement(9388216..9399142) /locus_tag="TCM_022976" /note="dbxref CacaoGD:Thecc1EG022976" mRNA complement(join(9388216..9389186,9389342..9389710, 9389973..9390159,9390262..9390454,9390547..9390820, 9390941..9391100,9392010..9392224,9392566..9392658, 9393361..9393516,9393626..9393829,9394410..9394685, 9395987..9396082,9396195..9396410,9396497..9396596, 9396787..9396932,9397291..9397702,9399047..9399142)) /locus_tag="TCM_022976" /product="RNA helicase family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29333.m001052" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012528t1" /inference="similar to AA sequence:ricco:29333.m001052" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc665t10" mRNA complement(join(9388806..9389186,9389342..9389710, 9389973..9390159,9390262..9390454,9390547..9390820, 9390941..9391100,9392010..9392224,9393361..9393516, 9393626..9393829,9394410..9394685,9395987..9396082, 9396195..9396410,9396497..9396596,9396787..9396932, 9397291..9397695)) /locus_tag="TCM_022976" /product="RNA helicase family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29333.m001052" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012528t1" /inference="similar to AA sequence:Phytozome:GSVIVT01022608001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc665t10; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc665t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3755t4" CDS complement(join(9389055..9389186,9389342..9389710, 9389973..9390159,9390262..9390454,9390547..9390820, 9390941..9391100,9392010..9392224,9393361..9393516, 9393626..9393829,9394410..9394685,9395987..9396082, 9396195..9396410,9396497..9396596,9396787..9396932, 9397291..9397587)) /locus_tag="TCM_022976" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG012528t1" /codon_start=1 /product="RNA helicase family protein isoform 2" /protein_id="EOY08498.1" /db_xref="Phytozome:GSVIVT01022608001" /db_xref="TAIR:AT2G35920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4ILR7" /translation="MSLRLLSAHNSLTLLFSKRLFLVPTPLISSFPPPQISSFAMSHR PNYQGGRRGGGGPNSGRGGGRRGGGGGGGRGGRGGEQRWWDPVWRAERLRQKAAEMEV LDEGEWWDKINQMKKGEEQEMIIRRNFSRSDQQILSDMAYQLGLYFHAYNKGKALVVS KVPLPNYRADLDERHGSTQKEIRMSTETERRVGNLLDSSRDARSTDDSGVASSRGATK PLPDVKRTDSVSTIGTDSAKEKFSAELKQKQENLKASDRVKVMRSFREKLPAFKVKAE FLKAVTENQVLVISGGTGCGKTTQLSQFILEEEISCLRGADCNIICTQPRRISAISVA SRISLERGESLGETVGYQIRLESKRSAQTRLLFCTAGVLLRQLVQDPDLNGVSHLLVD EIHERGMNEDFLLIILRDLLPRRPDLRLVLMSATINADLFSKYFGNAPTIHIPWLTFP VAELFLEDVLQQTRYNIKSEFDNFQGNSQRRRKELDLKQDNLTALFEVEAAIEYICRH EGDGAILVFLTGWDDISKLLDKIKVNSFLGDLSKFLVLPLHGSMPTINQREIFDRPPP NKRKIVLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRR GRAGRVQPGVCYRLYPKLIHDAMLDYQLPEILRTPLQELCLHIKSLQLGTVGSFLAKA LQPPDPLSVQNAIELLKTIGALDDAEELTPLGRHLCTLPLDPNIGKMLLMGAIFQCLN PALTIASALAHRDPFVLPIHRKEEADDAKRSFAGDSCSDHIALLKAFGGYKDAKSNGR ERAFCWEYYLSPVTLQMMEDMRNQFIDLLSDIGFVDKSRGASAYNKYSHDSEMVCAIL CAGLYPNVVQCKRRGKRTAFYTKEVGKVDIHPASVNAGVHHFPLPYMVYSEKVKTTSI FIRDSTNISDYALLLFGGNLIPSKTGEGIEMLGGYLHFSASKSVLDLIQKLRGELGKL LNRKVEEPGFDISVEGKGVVSAVVELLHSQNVRY" CDS complement(join(9389055..9389186,9389342..9389710, 9389973..9390159,9390262..9390454,9390547..9390820, 9390941..9391100,9392010..9392224,9392566..9392658, 9393361..9393516,9393626..9393829,9394410..9394685, 9395987..9396082,9396195..9396410,9396497..9396596, 9396787..9396932,9397291..9397587)) /locus_tag="TCM_022976" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29333.m001052; paralog of Thecc1EG012528t1" /codon_start=1 /product="RNA helicase family protein isoform 1" /protein_id="EOY08497.1" /db_xref="TAIR:AT2G35920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4ILR7" /translation="MSLRLLSAHNSLTLLFSKRLFLVPTPLISSFPPPQISSFAMSHR PNYQGGRRGGGGPNSGRGGGRRGGGGGGGRGGRGGEQRWWDPVWRAERLRQKAAEMEV LDEGEWWDKINQMKKGEEQEMIIRRNFSRSDQQILSDMAYQLGLYFHAYNKGKALVVS KVPLPNYRADLDERHGSTQKEIRMSTETERRVGNLLDSSRDARSTDDSGVASSRGATK PLPDVKRTDSVSTIGTDSAKEKFSAELKQKQENLKASDRVKVMRSFREKLPAFKVKAE FLKAVTENQVLVISGGTGCGKTTQLSQFILEEEISCLRGADCNIICTQPRRISAISVA SRISLERGESLGETVGYQIRLESKRSAQTRLLFCTAGVLLRQLVQDPDLNGVSHLLVD EIHERGMNEDFLLIILRDLLPRRPDLRLVLMSATINADLFSKYFGNAPTIHIPWLTFP VAELFLEDVLQQTRYNIKSEFDNFQGNSQRRRKELDLKQDNLTALFEDVDIDSHYKNY SVSTRHSLEAWSGSQIDLGLVEAAIEYICRHEGDGAILVFLTGWDDISKLLDKIKVNS FLGDLSKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVIDC GKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYRLYPKLIHDAMLDYQ LPEILRTPLQELCLHIKSLQLGTVGSFLAKALQPPDPLSVQNAIELLKTIGALDDAEE LTPLGRHLCTLPLDPNIGKMLLMGAIFQCLNPALTIASALAHRDPFVLPIHRKEEADD AKRSFAGDSCSDHIALLKAFGGYKDAKSNGRERAFCWEYYLSPVTLQMMEDMRNQFID LLSDIGFVDKSRGASAYNKYSHDSEMVCAILCAGLYPNVVQCKRRGKRTAFYTKEVGK VDIHPASVNAGVHHFPLPYMVYSEKVKTTSIFIRDSTNISDYALLLFGGNLIPSKTGE GIEMLGGYLHFSASKSVLDLIQKLRGELGKLLNRKVEEPGFDISVEGKGVVSAVVELL HSQNVRY" mRNA complement(join(9390262..9390820,9390941..9391100, 9392010..9392224,9392566..9392658,9393361..9393516, 9393626..9393829,9394410..9394685,9395987..9396082, 9396195..9396410,9396497..9396596,9396787..9396932, 9397291..9397695)) /locus_tag="TCM_022976" /product="RNA helicase family protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:29333.m001052" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012528t1" /inference="similar to AA sequence:ricco:29333.m001052" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc659t8; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc665t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3755t4" CDS complement(join(9390524..9390820,9390941..9391100, 9392010..9392224,9392566..9392658,9393361..9393516, 9393626..9393829,9394410..9394685,9395987..9396082, 9396195..9396410,9396497..9396596,9396787..9396932, 9397291..9397587)) /locus_tag="TCM_022976" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29333.m001052; paralog of Thecc1EG012528t1" /codon_start=1 /product="RNA helicase family protein isoform 3" /protein_id="EOY08499.1" /db_xref="TAIR:AT2G35920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4ILR7" /translation="MSLRLLSAHNSLTLLFSKRLFLVPTPLISSFPPPQISSFAMSHR PNYQGGRRGGGGPNSGRGGGRRGGGGGGGRGGRGGEQRWWDPVWRAERLRQKAAEMEV LDEGEWWDKINQMKKGEEQEMIIRRNFSRSDQQILSDMAYQLGLYFHAYNKGKALVVS KVPLPNYRADLDERHGSTQKEIRMSTETERRVGNLLDSSRDARSTDDSGVASSRGATK PLPDVKRTDSVSTIGTDSAKEKFSAELKQKQENLKASDRVKVMRSFREKLPAFKVKAE FLKAVTENQVLVISGGTGCGKTTQLSQFILEEEISCLRGADCNIICTQPRRISAISVA SRISLERGESLGETVGYQIRLESKRSAQTRLLFCTAGVLLRQLVQDPDLNGVSHLLVD EIHERGMNEDFLLIILRDLLPRRPDLRLVLMSATINADLFSKYFGNAPTIHIPWLTFP VAELFLEDVLQQTRYNIKSEFDNFQGNSQRRRKELDLKQDNLTALFEDVDIDSHYKNY SVSTRHSLEAWSGSQIDLGLVEAAIEYICRHEGDGAILVFLTGWDDISKLLDKIKVNS FLGDLSKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVIDC GKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYRLYPKLIHDAMLDYQ LPEILRTPLQELCLHIKSLQLGTVGSFLAKALQPPDPLSVQNAIELLKTIGALDDAEE LTPLGIYFFFF" gene 9397658..9415770 /locus_tag="TCM_022977" /note="dbxref CacaoGD:Thecc1EG022977" mRNA join(9397658..9398163,9399003..9399641,9399768..9399862, 9400339..9400438,9400647..9400751,9400914..9401076, 9401827..9401947,9402098..9402160,9402243..9402323, 9402464..9402558,9402650..9402800,9403071..9403157, 9404087..9404206,9404289..9404417,9404496..9404593, 9404690..9404813,9404995..9405102,9405566..9405707, 9407576..9407686,9407794..9407854,9408033..9408099, 9408340..9408525,9408631..9408741,9409782..9409946, 9410053..9410211,9410869..9411102,9411713..9411886, 9412183..9412295,9412397..9413456,9415423..9415770) /locus_tag="TCM_022977" /product="Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01022591001" /inference="similar to AA sequence:ricco:29333.m001053" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1053t2" mRNA join(9399311..9399641,9399768..9399862,9400191..9400252, 9400339..9400438,9400647..9400751,9400914..9401076, 9401827..9401947,9402098..9402160,9402243..9402323, 9402464..9402558,9402650..9402800,9403071..9403157, 9404087..9404206,9404289..9404417,9404496..9404593, 9404690..9404813,9404995..9405102,9405566..9405707, 9407576..9407686,9407794..9407854,9408033..9408099, 9408340..9408525,9408631..9408741,9409782..9409946, 9410053..9410211,9410869..9411102,9411713..9411886, 9412183..9412295,9412397..9413164) /locus_tag="TCM_022977" /product="Tetratricopeptide repeat (TPR)-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01022591001" /inference="similar to AA sequence:Phytozome:GSVIVT01022591001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1053t6; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1053t2" mRNA join(9399311..9399641,9399768..9399862,9400339..9400438, 9400647..9400751,9400914..9401076,9401827..9401947, 9402098..9402160,9402243..9402323,9402464..9402558, 9402650..9402800,9403071..9403157,9404087..9404206, 9404289..9404593,9404690..9404813,9404995..9405102, 9405566..9405707,9407576..9407686,9407794..9407854, 9408033..9408099,9408340..9408525,9408631..9408741, 9409782..9409946,9410053..9410211,9410869..9411102, 9411713..9411886,9412183..9412295,9412397..9413164) /locus_tag="TCM_022977" /product="Tetratricopeptide repeat (TPR)-like superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01022591001" /inference="similar to AA sequence:ricco:29333.m001053" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1053t5; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1053t2" CDS join(9399479..9399641,9399768..9399862,9400339..9400438, 9400647..9400751,9400914..9401076,9401827..9401947, 9402098..9402160,9402243..9402323,9402464..9402558, 9402650..9402800,9403071..9403157,9404087..9404206, 9404289..9404593,9404690..9404813,9404995..9405102, 9405566..9405707,9407576..9407686,9407794..9407854, 9408033..9408099,9408340..9408525,9408631..9408741, 9409782..9409946,9410053..9410211,9410869..9411102, 9411713..9411886,9412183..9412295,9412397..9412952) /locus_tag="TCM_022977" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29333.m001053" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein isoform 3" /protein_id="EOY08502.1" /db_xref="TAIR:AT5G16280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KCR0" /translation="MVDPANTPLGKMLLEEITPVVMVLCTPLVEESCLKNGLSFIQML SPFCNFTNIDVPVRTASDQPYRLQKFKLRLFYASDIRQPNLEVAKERLKQVITQAGEK DFSEMWSDPPQVNDLLSRPESEILPSWFQFFNEELVRTLSFSDHEAFDHPVACLLVVS SRDEEPINRFVDLFNTNKLPSLLNDGAMDPKILKHYLLVHDNQDGASEKATKLLTEMK STFGPNDCQLLCINSSQDRQIHHQENPWAPFKSDALPTENLGCFLNFDDFNEIKDLMQ ELSSKHIIPYMEQKIRVLNQQVSATRKGFRNQIKNLWWRKGKEDASDSPNGPVYTFSS VESQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFLLDQS RKEAEYCMENAFNTYLKLGSAGQQNATRCGLWWVEMLKIRDQIKEAATVYFRICSEDP LHSAVMLEQASFCYLLSKPPMLHKYGFHLVLSGDHYKKCDQVSQSLKYCDNVPNSRSS NILQCFHLQIKHAIRTYRSAVSVYKGTTWSLIKDHVHFHIGQWYAFLGMYDVAVTHML ELLACSHQSKTTQELFLRDFLQIVQKTGKTFEVLKLQLPAINISSLKVIFEDHRTYAS AAAASVKESVWHSLEEDMIPSLSTAKSNWLELQSKLMPKKYKESNICVAGEAIKVDVE FKNPLQISISILSVSLICELSANLEEMNSDGNGSNIELQNDENKTSTSTRDIDSSSIL SEVDLSLEGGETTLVQLTVTPRVEGILKIVGVKWKLSSSVVGFHNFESNSLNKNVAKG RRKAKYSPDNYLKFIVIKSLPKLEGIIHSLPEKTYVGDLRHLVLELSNRSKFPVKNLK MKISNPRFLNAGNQRELNVEFPACLGKKTNVVQSGGHSNINKVLQNVFLFPENISVQE ETSLSWPLWFRAAVPGNISLYVTIYYEMEDVSSIMKYRTLRMHYNLQVLPSLDVSFEL SPCPSRLQEFLLRMDVVNKTSSECFQVHQLSSVGKQWEISLLQPVDSILPSQSLFAGQ ALSCFFKLKDRRKSSTSEDSIPSPSLLLQSDVRLGPQGNSEALFDVYSSPLADFHNSE RLHQGMPLQGNEYKVDFVFISQLLKGNIDSGAPNTPLLISHHACHCSLSSMSSISWLV DGPQTVQHNFSGSLCEVNLRMMITNSSDAVASVRISTFDSPSSSIQSSDASAPQPGLP PENQAGWCDIPVVNDMKVITSDALATRFTKSVSLESVSQFIWSGSSSTKLRLQPRSTA EIPLQISVFAPGIYDLSNYVLNWNLMPSSEEEKQGEASKSSGVCQGYPYYLTVVQST" CDS join(9399479..9399641,9399768..9399862,9400339..9400438, 9400647..9400751,9400914..9401076,9401827..9401947, 9402098..9402160,9402243..9402323,9402464..9402558, 9402650..9402800,9403071..9403157,9404087..9404206, 9404289..9404417,9404496..9404593,9404690..9404813, 9404995..9405102,9405566..9405707,9407576..9407686, 9407794..9407854,9408033..9408099,9408340..9408525, 9408631..9408741,9409782..9409946,9410053..9410211, 9410869..9411102,9411713..9411886,9412183..9412295, 9412397..9412952) /locus_tag="TCM_022977" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29333.m001053" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1" /protein_id="EOY08500.1" /db_xref="TAIR:AT5G16280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KCR0" /translation="MVDPANTPLGKMLLEEITPVVMVLCTPLVEESCLKNGLSFIQML SPFCNFTNIDVPVRTASDQPYRLQKFKLRLFYASDIRQPNLEVAKERLKQVITQAGEK DFSEMWSDPPQVNDLLSRPESEILPSWFQFFNEELVRTLSFSDHEAFDHPVACLLVVS SRDEEPINRFVDLFNTNKLPSLLNDGAMDPKILKHYLLVHDNQDGASEKATKLLTEMK STFGPNDCQLLCINSSQDRQIHHQENPWAPFKSDALPTENLGCFLNFDDFNEIKDLMQ ELSSKHIIPYMEQKIRVLNQQVSATRKGFRNQIKNLWWRKGKEDASDSPNGPVYTFSS VESQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFLLDQS RKEAEYCMENAFNTYLKLGSAGQQNATRCGLWWVEMLKIRDQIKEAATVYFRICSEDP LHSAVMLEQASFCYLLSKPPMLHKYGFHLVLSGDHYKKCDQIKHAIRTYRSAVSVYKG TTWSLIKDHVHFHIGQWYAFLGMYDVAVTHMLELLACSHQSKTTQELFLRDFLQIVQK TGKTFEVLKLQLPAINISSLKVIFEDHRTYASAAAASVKESVWHSLEEDMIPSLSTAK SNWLELQSKLMPKKYKESNICVAGEAIKVDVEFKNPLQISISILSVSLICELSANLEE MNSDGNGSNIELQNDENKTSTSTRDIDSSSILSEVDLSLEGGETTLVQLTVTPRVEGI LKIVGVKWKLSSSVVGFHNFESNSLNKNVAKGRRKAKYSPDNYLKFIVIKSLPKLEGI IHSLPEKTYVGDLRHLVLELSNRSKFPVKNLKMKISNPRFLNAGNQRELNVEFPACLG KKTNVVQSGGHSNINKVLQNVFLFPENISVQEETSLSWPLWFRAAVPGNISLYVTIYY EMEDVSSIMKYRTLRMHYNLQVLPSLDVSFELSPCPSRLQEFLLRMDVVNKTSSECFQ VHQLSSVGKQWEISLLQPVDSILPSQSLFAGQALSCFFKLKDRRKSSTSEDSIPSPSL LLQSDVRLGPQGNSEALFDVYSSPLADFHNSERLHQGMPLQGNEYKVDFVFISQLLKG NIDSGAPNTPLLISHHACHCSLSSMSSISWLVDGPQTVQHNFSGSLCEVNLRMMITNS SDAVASVRISTFDSPSSSIQSSDASAPQPGLPPENQAGWCDIPVVNDMKVITSDALAT RFTKSVSLESVSQFIWSGSSSTKLRLQPRSTAEIPLQISVFAPGIYDLSNYVLNWNLM PSSEEEKQGEASKSSGVCQGYPYYLTVVQST" CDS join(9400399..9400438,9400647..9400751,9400914..9401076, 9401827..9401947,9402098..9402160,9402243..9402323, 9402464..9402558,9402650..9402800,9403071..9403157, 9404087..9404206,9404289..9404417,9404496..9404593, 9404690..9404813,9404995..9405102,9405566..9405707, 9407576..9407686,9407794..9407854,9408033..9408099, 9408340..9408525,9408631..9408741,9409782..9409946, 9410053..9410211,9410869..9411102,9411713..9411886, 9412183..9412295,9412397..9412952) /locus_tag="TCM_022977" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein isoform 2" /protein_id="EOY08501.1" /db_xref="Phytozome:GSVIVT01022591001" /db_xref="TAIR:AT5G16280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KCR0" /translation="MWSDPPQVNDLLSRPESEILPSWFQFFNEELVRTLSFSDHEAFD HPVACLLVVSSRDEEPINRFVDLFNTNKLPSLLNDGAMDPKILKHYLLVHDNQDGASE KATKLLTEMKSTFGPNDCQLLCINSSQDRQIHHQENPWAPFKSDALPTENLGCFLNFD DFNEIKDLMQELSSKHIIPYMEQKIRVLNQQVSATRKGFRNQIKNLWWRKGKEDASDS PNGPVYTFSSVESQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMM GLTYFLLDQSRKEAEYCMENAFNTYLKLGSAGQQNATRCGLWWVEMLKIRDQIKEAAT VYFRICSEDPLHSAVMLEQASFCYLLSKPPMLHKYGFHLVLSGDHYKKCDQIKHAIRT YRSAVSVYKGTTWSLIKDHVHFHIGQWYAFLGMYDVAVTHMLELLACSHQSKTTQELF LRDFLQIVQKTGKTFEVLKLQLPAINISSLKVIFEDHRTYASAAAASVKESVWHSLEE DMIPSLSTAKSNWLELQSKLMPKKYKESNICVAGEAIKVDVEFKNPLQISISILSVSL ICELSANLEEMNSDGNGSNIELQNDENKTSTSTRDIDSSSILSEVDLSLEGGETTLVQ LTVTPRVEGILKIVGVKWKLSSSVVGFHNFESNSLNKNVAKGRRKAKYSPDNYLKFIV IKSLPKLEGIIHSLPEKTYVGDLRHLVLELSNRSKFPVKNLKMKISNPRFLNAGNQRE LNVEFPACLGKKTNVVQSGGHSNINKVLQNVFLFPENISVQEETSLSWPLWFRAAVPG NISLYVTIYYEMEDVSSIMKYRTLRMHYNLQVLPSLDVSFELSPCPSRLQEFLLRMDV VNKTSSECFQVHQLSSVGKQWEISLLQPVDSILPSQSLFAGQALSCFFKLKDRRKSST SEDSIPSPSLLLQSDVRLGPQGNSEALFDVYSSPLADFHNSERLHQGMPLQGNEYKVD FVFISQLLKGNIDSGAPNTPLLISHHACHCSLSSMSSISWLVDGPQTVQHNFSGSLCE VNLRMMITNSSDAVASVRISTFDSPSSSIQSSDASAPQPGLPPENQAGWCDIPVVNDM KVITSDALATRFTKSVSLESVSQFIWSGSSSTKLRLQPRSTAEIPLQISVFAPGIYDL SNYVLNWNLMPSSEEEKQGEASKSSGVCQGYPYYLTVVQST" gene 9416290..9418298 /locus_tag="TCM_022978" /note="dbxref CacaoGD:Thecc1EG022978" mRNA join(9416290..9416887,9417478..9418298) /locus_tag="TCM_022978" /product="Syntaxin of plants 121" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s21670.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029975t1" /inference="similar to AA sequence:ricco:29333.m001054" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g06974t00001" CDS join(9416332..9416887,9417478..9417914) /locus_tag="TCM_022978" /note="dbxref ricco:29333.m001054; paralog of Thecc1EG029975t1" /codon_start=1 /product="Syntaxin of plants 121" /protein_id="EOY08503.1" /db_xref="TAIR:AT3G11820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I3K6" /translation="MNDLFSGSFSRFRSEEASPDHHVIQMTQSSSTSGGVNLDKFFED VESIKDELKELERLNDNLSSSHEQSKTLHNAKTVKELRAKMDADVAMALKKAKLIKVR LEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNGLREKISSEYRE TVQRRYFTVTGENPDERTIDLLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAV KDMEKNLKELHQVFLDMAVLVQAQGEQLDDIESQVNRANSFVRGGTERLQTARNYQKN TRKWTCYAIILLLVIILFVVLFTVRPWENNGGGGGGNSSPSQNPTTTAPPPPTA" mobile_element 9420994..9426178 /note="source:CACAO_M_E44088_F76_scaffold_5 1 5180" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9426179..9429500 /note="source:CACAO_M_E35106_F82_scaffold_5 1 3322" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9429501..9429788 /note="source:CACAO_M_E4396_F76_scaffold_2 5405 5709" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 9431478..9436639 /locus_tag="TCM_022980" /note="dbxref CacaoGD:Thecc1EG022980" mRNA join(9431478..9431581,9431695..9431715,9431847..9431947, 9432234..9432291,9432409..9432452,9432575..9432655, 9434228..9434298,9434420..9434530,9434762..9434844, 9435127..9435343,9435709..9435789,9436247..9436639) /locus_tag="TCM_022980" /product="TatD related DNase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06890.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s06890.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaB_g10922t00001" CDS join(9431560..9431581,9431695..9431715,9431847..9431947, 9432234..9432291,9432409..9432452,9432575..9432655, 9434228..9434298,9434420..9434530,9434762..9434844, 9435127..9435343,9435709..9435789,9436247..9436316) /locus_tag="TCM_022980" /codon_start=1 /product="TatD related DNase" /protein_id="EOY08504.1" /db_xref="Phytozome:POPTR_0016s06890.1" /db_xref="TAIR:AT3G52390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4J6X3" /translation="MAPTRMIDIAVNFTDGMFKGIYNGKQYHVSDIATVLSRAWNAGV DRIIVTGGSLEESKEALAIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQALLALAK EGIQKGKVVAIGECGLDYDRLHFCPPEIQKKYFEKQFELAYATKLPMFLHMRAAAGDF CEILEQNINKFTGGVTHSFTGSAEDRDKLLSFHNMYIGINGCSLKMAENLDVVRDIPI ERMMIETDSPYCEIKSTHAGIKFVKSLWPSKKKEKYDQESLVKGRNEPCLVRQVLEVV AGYKGISIDQLSATLYQNTCRVFFPHDLDAAADALLAGRRESQ" gene complement(9436799..9438591) /locus_tag="TCM_022982" /note="dbxref CacaoGD:Thecc1EG022982" mRNA complement(join(9436799..9437310,9437392..9437700, 9437896..9437997,9438112..9438591)) /locus_tag="TCM_022982" /product="Chloroplast RNA-binding protein 33" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01022600001" /inference="similar to AA sequence:Phytozome:Glyma03g36130.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03373t00002" CDS complement(join(9437179..9437310,9437392..9437700, 9437896..9437997,9438112..9438591)) /locus_tag="TCM_022982" /codon_start=1 /product="Chloroplast RNA-binding protein 33" /protein_id="EOY08505.1" /db_xref="Phytozome:Glyma03g36130.1" /db_xref="TAIR:AT3G52380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIJ4" /translation="MHILFFSLQKMSAPTLPMAATVAAAATSLFSNNKLSTLLSSSLH SLPSKPTHKQLKPFNLKTQSLNSLPFSLHLSLPRLHCFAASFDSFLVTEDDRSPGEEY PESPNVEEPPQQEEAEEEKISESGGEEGRLYVGNLPYSMTSSELSEIFNEAGRVANVE IVYDRVTDRSRGFAFVTMASVDDAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMG PKIRRGYKSFLDSPYKIYAGNLGWGVTSQGLRDAFASQPGLLSAKVIYERDTGRSRGF GFVSFESAETVEAALNAMNGVEVEGRPLRLNMAADRAPGTPSPEMERNTKESLESSEL LSSVTA" gene 9441289..9448311 /locus_tag="TCM_022983" /note="dbxref CacaoGD:Thecc1EG022983" mRNA join(9441289..9441335,9445753..9446483,9447924..9448311) /locus_tag="TCM_022983" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.28 coverage" CDS join(9446175..9446483,9447924..9448094) /locus_tag="TCM_022983" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08506.1" /translation="MKFNVDGVVKGCPGSTGFEGILRDPSGEVKATFFKSVGMADSNL AEIRAKTRVFLIFLASTWNEEYHLVIESDSINVVKWTEIRALHHRACTNGFYKLNAIK RCGAPEINREFPLEFRAIWKGNIAKIIVAGLAVYVQSPVISQLVHDPNKNFSHDKVS" gene complement(9448830..9454746) /locus_tag="TCM_022984" /note="dbxref CacaoGD:Thecc1EG022984" mRNA complement(join(9448830..9449647,9450637..9450777, 9451713..9451781,9451871..9451980,9453743..9454083, 9454669..9454746)) /locus_tag="TCM_022984" /product="Nuclear transcription factor Y subunit A-10, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06860.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s06860.3" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3772t5" CDS complement(join(9449243..9449647,9450637..9450777, 9451713..9451781,9451871..9451980,9453743..9454004)) /locus_tag="TCM_022984" /codon_start=1 /product="Nuclear transcription factor Y subunit A-10, putative" /protein_id="EOY08507.1" /db_xref="Phytozome:POPTR_0016s06860.3" /db_xref="TAIR:AT5G06510.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIJ3" /translation="MAMQTLYLKEHDGIVHNPMGQLASVPTLPWWSALGSQSVCGESC GQFKTLLMEHPSSGDQLTSTKQAGRATEQQLNKANPTQFTIFPGDCKNSGDGHKPQAV ISLQSAPSEHHARFELGFRQPMVCAKYPYMDQCYGVFSTYGPQISGRVMLPLNVATED GPIYVNAKQYNGIIRRRQSRAKAVLENKVTKARKPYMHYSRHLHAMRRPRGCGGRFLN TKCSNSGKDGIKMNKAAEGKLWHYAVSQNSEVLQSDSGTLNSSKEANGGGSTLSGSEV TSVYSRGDLEHFPINHLGLSVHTLPRMVDNGRGTVMPSKWVATGDNCCNLKV" mobile_element complement(9463153..9463717) /note="source:CACAO_M_E11415_F328_scaffold_2 5898 6460" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9463818..9464848) /note="source:CACAO_M_E43590_F7_scaffold_5 6588 7621" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9465074..9465351) /note="source:scaffold_8_CACTA_0859 16180 16488" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9468453..9471485 /note="source:INTACT118_F5_scaffold_9-int 2759 5839" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9472148..9472327) /note="source:CACAO_M_E48538_F49_scaffold_6 12703 12895" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9472620..9472883) /note="source:CACAO_M_E48538_F49_scaffold_6 12214 12477" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9474126..9474932 /note="source:scaffold_5_CACTA_0591 10060 10850" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9475615..9476618 /note="source:CACAO_M_E47740_F12_scaffold_6 5727 6719" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9481867..9485074 /note="source:CACAO_M_E35115_F328_scaffold_5 1 3208" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9489598..9489674 /note="source:CACAO_Again_on_S_E95_scaffold_3 84 163" /mobile_element_type="transposon:TIR/hAT" mobile_element 9489620..9491551 /note="source:INTACT118_F5_scaffold_9-int 2763 4709" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9491690..9493880 /note="source:CACAO_M_S_E415942_F15_scaffold_58 566 2754" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9493770..9493893) /note="source:INTACT143_F152_scaffold_7-int 1156 1276" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9493878..9493965) /note="source:scaffold_6_CACTA_0711 4570 4658" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9494100..9497104 /note="source:CACAO_M_S_E52917_F7_scaffold_5 1 3005" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9497113..9497224 /note="source:CACAO_M_E42809_F5_scaffold_5 6524 6611" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9497217..9497935 /note="source:INTACT118_F5_scaffold_9-int 5133 5843" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(9499517..9503776) /locus_tag="TCM_022987" /note="dbxref CacaoGD:Thecc1EG022987" mRNA complement(join(9499517..9499550,9502287..9502451, 9502989..9503593,9503661..9503776)) /locus_tag="TCM_022987" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s10030.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008459t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc10618t1" mobile_element 9499683..9501894 /note="source:scaffold_4_CACTA_0493 2825 5136" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(9502324..9502451,9502989..9503316)) /locus_tag="TCM_022987" /note="paralog of Thecc1EG008459t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08508.1" /translation="MINTLSDETNDALSTLQYEIRELKTQVNLLVITVGNASGRSRDR GEMAKVSKPKRYEGVRNAKELENFLFDMEQYFRAVCTESEEDKMAMASMYLTRDAKLW WCSKFINAFSVICIANVETPPPHTIVKEAKEKPARMGSIRFLSTLQALH" mobile_element 9513757..9513849 /note="source:CACAO_M_S_E109853_F60_scaffold_9 14866 14955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9516261..9535899 /note="source:CACAO_M_S_E52921_F60_scaffold_5 1 19639" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9536189..9536346 /note="source:CACAO_M_S_E7818_F60_scaffold_2 445 609" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9536350..9537148 /note="source:CACAO_M_S_E15657_F60_scaffold_2 486 1320" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9537186..9537824) /note="source:INTACT222_F33_scaffold_7-int 3735 4356" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9538295..9538461) /note="source:CACAO_M_E71671_F17_scaffold_10 6586 6745" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9538564..9540500) /note="source:CACAO_M_E71671_F17_scaffold_10 1497 3425" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9540971..9541615) /note="source:CACAO_M_E71671_F17_scaffold_10 9756 10397" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9541614..9544187 /note="source:CACAO_M_E58324_F9_scaffold_9 18480 19655" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9544545..9546242 /note="source:INTACT584_F15_scaffold_3-int 9716 11289" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9546486..9549249 /note="source:CACAO_M_E35125_F79_scaffold_5 1 2764" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9549956..9552083) /note="source:CACAO_M_S_E7818_F60_scaffold_2 5925 9509" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 9549961..9577110 /locus_tag="TCM_022993" /note="dbxref CacaoGD:Thecc1EG022993" mRNA join(9549961..9550093,9568686..9569898,9576873..9577110) /locus_tag="TCM_022993" /product="AGAMOUS-like 48, putative" /inference="alignment:exonerate- protein:2:Phytozome:Sb05g023895.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023041t1" /inference="similar to AA sequence:ricco:29333.m001063" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" mobile_element complement(9552395..9553294) /note="source:CACAO_M_E11098_F15_scaffold_2 14700 15567" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9555451..9558393 /note="source:CACAO_M_E35127_F7_scaffold_5 1 2943" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9559686..9559826 /note="source:CACAO_M_S_E85177_F5_scaffold_7 20144 20278" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9567170..9567222 /note="source:CACAO_M_S_E32752_F12_scaffold_4 4119 4170" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS 9568774..9569844 /locus_tag="TCM_022993" /note="dbxref ricco:29333.m001063; paralog of Thecc1EG023041t1" /codon_start=1 /product="AGAMOUS-like 48, putative" /protein_id="EOY08509.1" /db_xref="TAIR:AT5G48670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C8G5" /translation="MTRKKVKLAWITNDSTRRASLKKRRLGLLKKVSELTTLCDVNAC VIIYSPDEIEPKVWPSHNVVKQQLIWFRSIPELNRQKKMMNQETYLKGKVTKVQEQLT KLERRNKDVEMAHLTHQINQGKRLDELNLSELRGLTWLVEENMKEIKKRIEFLERALF APTYAPHHPHLPFPPQSHTMNETARIGSGSVDHGRDERTPIEPLLWDQRFIDMMNNNE LKSAGCISIRSDMVILYRSFAKSATDDLKLPRHSFGGSSSAAVDMGLPLTSFRPHGAG AGADDMWLPHECRIGGSKFGPFGNEIELGPYLFRGHIRSSFFETELRLPPFKRYGGSS SDAGSDFRLPFNGKTWANNLSP" mobile_element complement(9573442..9576268) /note="source:CACAO_M_E43026_F78_scaffold_5 1 2833" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9577171..9578009) /note="source:INTACT226_F51_scaffold_1-int 10395 11223" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9578010..9580923 /note="source:CACAO_M_E35129_F33_scaffold_5 1 2914" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9580924..9584271 /note="source:CACAO_M_E33160_F143_scaffold_4 837 4168" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9584272..9586102) /note="source:CACAO_M_S_E145698_F277_scaffold_11 1175 3004" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9586103..9589093 /note="source:CACAO_M_S_E52933_F7_scaffold_5 1 2991" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9588983..9589106) /note="source:scaffold_5_CACTA_0591 569 692" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9589088..9589125) /note="source:INTACT624_F277_scaffold_2-int 1147 1184" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9589126..9596059 /note="source:CACAO_M_E13157_F7_scaffold_3 1 7036" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9596165..9599170 /note="source:CACAO_M_E9677_F7_scaffold_2 9846 12852" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9599171..9600311) /note="source:CACAO_M_S_E145698_F277_scaffold_11 1 861" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9600312..9605207) /note="source:CACAO_M_S_E84840_F51_scaffold_7 1999 6925" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9605208..9608045 /note="source:CACAO_M_S_E52934_F15_scaffold_5 1 2838" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9607972..9608057) /note="source:CACAO_M_E12297_F14_scaffold_3 13992 14080" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9608035..9609929 /note="source:CACAO_M_E33160_F143_scaffold_4 11640 13556" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9611959..9613819 /note="source:CACAO_M_S_E15173_F4_scaffold_2 1 1864" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9613814..9613999) /note="source:scaffold_5_CACTA_0591 7194 7378" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9615916..9619199 /note="source:CACAO_M_E35137_F82_scaffold_5 1 3284" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9619492..9621155) /note="source:INTACT212_F171_scaffold_10-int 5621 7276" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9621256..9621852) /note="source:CACAO_M_E3884_F22_scaffold_1 7042 7567" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9622751..9623350 /note="source:scaffold_4_CACTA_0494 1 599" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9624235..9624415 /note="source:scaffold_3_CACTA_0382 10027 10205" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9624535..9625563) /note="source:CACAO_M_E69460_F12_scaffold_9 44 1073" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9629021..9629079) /note="source:scaffold_1_CACTA_0024 4761 4820" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9629021..9629069 /note="source:INTACT189_F49_scaffold_5-int 19675 19705" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9629079..9629414 /note="source:scaffold_3_CACTA_0382 11895 12264" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9630178..9630268) /note="source:scaffold_3_CACTA_0382 11052 11142" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9632018..9632381 /note="source:scaffold_3_CACTA_0382 11895 12264" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9632691..9633023 /note="source:CACAO_M_E33160_F143_scaffold_4 4173 4507" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9634739..9641128) /note="source:INTACT670_F33_scaffold_3-int 2937 9360" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9652144..9654393 /note="source:CACAO_M_S_E65716_F44_scaffold_5 7480 9808" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9654393..9654473) /note="source:scaffold_4_CACTA_0494 2560 2643" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9654474..9666687 /note="source:INTACT414_F210_scaffold_5-int 1 12214" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9666688..9666983) /note="source:scaffold_4_CACTA_0494 2271 2566" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9670889..9673528 /note="source:CACAO_M_E35157_F369_scaffold_5 1 2640" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9673638..9673814) /note="source:CACAO_M_S_E5046_F335_scaffold_1 1709 1885" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9673947..9674135) /note="source:scaffold_3_CACTA_0382 11429 11620" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9675053..9677236) /note="source:INTACT207_F15_scaffold_4-int 8398 10595" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9678673..9678972 /note="source:CACAO_M_E45017_F15_scaffold_6 2437 2736" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9680391..9687223) /note="source:CACAO_M_E48700_F15_scaffold_6 1 6847" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9687332..9687759) /note="source:INTACT224_F176_scaffold_8-int 4813 5238" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9688296..9692614 /note="source:CACAO_M_E52239_F256_scaffold_7 19813 22438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9692616..9694013 /note="source:CACAO_M_E5892_F98_scaffold_2 4371 5768" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9694014..9696604 /note="source:CACAO_M_S_E52962_F231_scaffold_5 1 2578" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9700571..9701111) /note="source:INTACT93F_F345_scaffold_2-int 17133 17670" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9701423..9702564) /note="source:INTACT1308F_F98_scaffold_7-int 820 1961" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9703147..9704161 /note="source:INTACT743_F318_scaffold_2-int 2803 3817" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9704605..9707590) /note="source:INTACT93F_F345_scaffold_2-int 10884 13858" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9719563..9719675) /note="source:CACAO_M_E52239_F256_scaffold_7 6339 6454" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9721469..9722322) /note="source:scaffold_5_CACTA_0591 10060 10909" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9722259..9722335 /note="source:INTACT597_F267_scaffold_2-int 8598 8675" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9722801..9724509 /note="source:CACAO_M_E42395_F3_scaffold_5 19119 20822" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9724498..9724721 /note="source:CACAO_M_E42395_F3_scaffold_5 3604 3814" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9724724..9725274 /note="source:CACAO_M_E42395_F3_scaffold_5 3989 4543" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9725261..9726063 /note="source:CACAO_M_E42395_F3_scaffold_5 17485 18292" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9726056..9726314 /note="source:CACAO_M_E42395_F3_scaffold_5 18753 19002" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9726415..9727544) /note="source:CACAO_M_E58324_F9_scaffold_9 325 1456" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9726587..9742638 /note="source:scaffold_5_CACTA_0585 1 15740" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9743557..9746754) /note="source:CACAO_M_E5429_F369_scaffold_2 1 2741" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9746761..9748356) /note="source:CACAO_M_E11054_F12_scaffold_2 7420 8987" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9748273..9748374 /note="source:scaffold_2_CACTA_0261 1 102" /mobile_element_type="transposon:TIR/CACTA" gene 9751002..9752802 /locus_tag="TCM_023006" /note="dbxref CacaoGD:Thecc1EG023006" mRNA 9751002..9752802 /locus_tag="TCM_023006" /product="AGAMOUS-like 48, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06850.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023041t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s06850.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.11 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc8024t1" CDS 9751080..9752144 /locus_tag="TCM_023006" /note="paralog of Thecc1EG023041t1" /codon_start=1 /product="AGAMOUS-like 48, putative" /protein_id="EOY08510.1" /db_xref="Phytozome:POPTR_0016s06850.1" /db_xref="TAIR:AT2G40210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C8G5" /translation="MARKKVKLAWIVNDSARKASLKKRRLGLLKKVNELTTLCGVNAC VIICSPDETEPVVWPSQDVVQQQLVRFQSMPELERQKKMMNQETYLREKVTKEQEQLT KCQRRNKEIQMTHFMHQINQGKGLNELNLSELLGLTWFVEEKIKEIRKRIEFFQQVSF APAGAPHHPHLPFPPQGPAVNETARIGSGSACHGGDGRTSTEPLLWDQWFIDMMNQNE LKSAGSSSIRSDMGLPYHPLAGIAADDPGLPRHSFAAGSSGSAYMGLPHMSSRHQGAG AIDMGLSCGRSVSGSSFGPFRIDTGLGLHPSGGEVGSSSARSKLGLPPLRRFEGSSSG VGSDNGLPFDGKTWPNNFSP" mobile_element complement(9753223..9753581) /note="source:INTACT409F_F47_scaffold_4-int 1137 1485" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9753569..9753629) /note="source:INTACT409F_F47_scaffold_4-int 1137 1200" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9753617..9754823) /note="source:INTACT409F_F47_scaffold_4-int 1 1200" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9757785..9759907 /note="source:CACAO_M_E53152_F306_scaffold_8 1 2145" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9759908..9771174 /note="source:CACAO_M_E35176_F7_scaffold_5 1 11267" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9771275..9777532 /note="source:CACAO_M_E35176_F7_scaffold_5 11268 17525" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9777533..9778500) /note="source:CACAO_M_E22302_F143_scaffold_3 1 967" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9781020..9781094) /note="source:CACAO_M_E65050_F7_scaffold_9 7102 7176" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9781480..9781758 /note="source:INTACT701_F305_scaffold_10-int 1 278" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9781758..9784001) /note="source:CACAO_M_E10335_F369_scaffold_2 1 2336" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 9784031..9786718 /locus_tag="TCM_023008" /note="dbxref CacaoGD:Thecc1EG023008" mRNA join(9784031..9784304,9784437..9784940,9785043..9785576, 9785669..9786718) /locus_tag="TCM_023008" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.21 coverage" CDS join(9784091..9784304,9784437..9784940,9785043..9785576, 9785669..9786540) /locus_tag="TCM_023008" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08511.1" /translation="MRVFKWSPEFEAEKESAMVPVWISFPNLKTHLYEKSTLLLIAKT VGKPLYVDEATANGSRPSVARVCIEYDWHKESECMVLGNRPSKRKSSDKNVMDPLQQL NGMVVKEGEKYLNRAELSQNWEPKQGRTESTNSIPIGKNNFLSLPLMAEQCEMEEGEN RGLSEDQQMSRIALLRREAAAEQSVGAKNRNGKRESGSAEAVAAVSVKSKSVLSNVHE TFHENGNHAQAEVSKNNKKGQRRTEKIAKFSAKPQSVEGSAQVSFHVNGAHRQTGNTA AEREMAKDQLITAAEKDGTSLHEDLRAGADQNSKKYFVESPMQQRVTGKRDLDLTAPA EEDKMLLHQPVQKDAGENQKNSFLNPPTRTETLLHTRRDSVAENRRDSVAVGEEPRVA GEDRETGRDWVEITKSRSKTVDGAVYKSQQQSTARVAECSLHREGEQLPVSANNRETW DVIAPGGAEQTLASAAGMPAARHGQRDPTGETTGSKERDLPMPMLADGMSMQDFLQEE KAKIFFMQSKVWAVTFAHEKDQQRPENGLADPMKSPIAMLGQPNEQPNKCQQSEHMVI QPNGQPNIFQQLAYMIEGSGEHSPIEGQFTSQTKNINAHHRVISSKADIPPTQESPLG KCIHNKELSDVPSFPSFSETKFTKIEVHPRIRHRRHSDTEVSIDKILSLASNKAVDMG ENDEDSNENAISVNFAASWERERYF" mobile_element complement(9786725..9787523) /note="source:CACAO_M_E52662_F215_scaffold_7 13431 14237" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9788042..9788648 /note="source:CACAO_M_S_E14932_F233_scaffold_2 9632 10240" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9788649..9791040) /note="source:scaffold_5_CACTA_0591 4823 7190" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9791264..9793522 /note="source:CACAO_M_S_E14932_F233_scaffold_2 1100 2850" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9793682..9793939) /note="source:CACAO_M_E14312_F12_scaffold_3 11044 11303" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9793781..9794388 /note="source:CACAO_M_S_E17765_F76_scaffold_3 9947 10561" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9796127..9796361 /note="source:CACAO_M_S_E6875_F7_scaffold_2 13980 14211" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9799189..9801698 /note="source:CACAO_M_E42809_F5_scaffold_5 5154 7672" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9801699..9809784 /note="source:INTACT717_F312_scaffold_5-int 1 11039" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9809772..9812729 /note="source:CACAO_M_E35183_F248_scaffold_5 1 2958" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9812730..9815622) /note="source:CACAO_M_S_E144397_F164_scaffold_10 1 9411" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9815623..9818081 /note="source:CACAO_M_E42809_F5_scaffold_5 7667 10142" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9818100..9831510 /note="source:CACAO_M_E35188_F7_scaffold_5 1 13411" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9831511..9832029) /note="source:CACAO_M_E58324_F9_scaffold_9 7667 8181" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9838274..9839137) /note="source:CACAO_M_E44599_F33_scaffold_6 6720 7583" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(9838652..9845741) /locus_tag="TCM_023016" /note="dbxref CacaoGD:Thecc1EG023016" mRNA complement(join(9838652..9838897,9843118..9844569, 9845683..9845741)) /locus_tag="TCM_023016" /product="Gag protease polyprotein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_1126s00200.1.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009272t1" /inference="similar to AA sequence:Phytozome:POPTR_1126s00200.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc3Loc966t2" mobile_element complement(9840166..9841039) /note="source:CACAO_M_E12297_F14_scaffold_3 11666 12539" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9841140..9842743 /note="source:CACAO_M_E44425_F33_scaffold_6 17809 19412" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(9841388..9842430) /locus_tag="TCM_023017" /note="dbxref CacaoGD:Thecc1EG023017" mRNA complement(join(9841388..9841850,9841934..9842430)) /locus_tag="TCM_023017" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:frave:gene21083.22" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012633t1" /inference="similar to AA sequence:Phytozome:Glyma01g20680.1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc3Loc2412t5_G2" CDS complement(join(9841459..9841850,9841934..9842273)) /locus_tag="TCM_023017" /note="paralog of Thecc1EG012633t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08513.1" /db_xref="Phytozome:Glyma01g20680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AGW4" /translation="MLRACVIDFIGSWDRHLPLVEFAYNNSFQSSIGMAPYEALYGRK CRTLLCWDEVGERKLVNVELIDLTNDKVKVIRERLKTAQDRQKNYSDKRRKDLEFEVD DKVFLKVSPWKGVIRFAKRGKLNPRYIGPFRIIERIGPVAYRLELPPELDRIHNVFHV SMLKKYVPDPSHILETPPIELHEDLKFEVQPVRILDRKDRVLRNKSIPMVKVLWKNAR MEEMTWEVESQMRNQYPHLLFELGK" CDS complement(9843349..9844563) /locus_tag="TCM_023016" /note="paralog of Thecc1EG009272t1" /codon_start=1 /product="Gag protease polyprotein" /protein_id="EOY08512.1" /db_xref="Phytozome:POPTR_1126s00200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E5GBB7" /translation="MPPRRGRPPLTRSVGRGRGRSQRHQPDTVEEESAASTIRATPAA EQADSPPHPPSPQPPTGIPSMPTEAAQALAAFFAAIVGQAQTGQVPPVVPPTTPLVPP PIQDVSISKKLKEARQLGCVSFTGELDATVAKDWINQVSETLSDMGLDDDMKLMVATR LLEKRARTWWNSVKSRSATPQTWSDFLREFDGQYFTYFHQKEKKREFLSLKQGNLTVE EYETRFNELMLYVPDLVKSEQDQASYFEEGLRNEIRERMTVIGREPHKEVVQMALRAE KLATENRRIRTKFAKRRNLGMSSSQPVKRGKDSATSGSTTSISVTSPRPPFPPSQQRP SRFSRSAMTGSGKSLGGFDRCRNCGNYHSGLCRGPTRCFQCGQTGHIRSNCPQLGRAT VAASSPPTRTDI" mobile_element complement(9845673..9846499) /note="source:CACAO_M_E12297_F14_scaffold_3 7626 8453" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9847290..9847778) /note="source:CACAO_on_S_E390_scaffold_9 12282 12770" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(9848548..9849584) /note="source:CACAO_M_E58324_F9_scaffold_9 9186 10224" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9849587..9849624 /note="source:CACAO_M_E65050_F7_scaffold_9 7847 7885" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9849609..9851243 /note="source:CACAO_M_E58324_F9_scaffold_9 8656 10227" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9855359..9858324) /note="source:CACAO_M_E4498_F7_scaffold_2 1 2986" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9865943..9865999) /note="source:scaffold_4_CACTA_0493 2849 2906" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9866000..9866023 /note="source:CACAO_M_E58819_F24_scaffold_9 16194 16272" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9868604..9871601) /note="source:CACAO_M_E65221_F7_scaffold_9 1 2988" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9872681..9875050 /note="source:CACAO_M_E52239_F256_scaffold_7 19813 22166" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9875046..9875421) /note="source:scaffold_9_CACTA_0929 8797 9168" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9883035..9885896 /note="source:CACAO_M_E35195_F15_scaffold_5 1 2862" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9885897..9886237 /note="source:CACAO_M_E11415_F328_scaffold_2 9290 9640" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9886398..9887287) /note="source:CACAO_M_E11025_F15_scaffold_2 1970 2858" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9887281..9887395 /note="source:CACAO_M_S_E32752_F12_scaffold_4 2469 2583" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9887496..9887928 /note="source:CACAO_M_S_E32752_F12_scaffold_4 2618 3055" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9889317..9890065 /note="source:CACAO_M_S_E32752_F12_scaffold_4 4145 4890" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9890050..9891994 /note="source:CACAO_M_E70436_F15_scaffold_10 874 2835" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9893428..9893570) /note="source:CACAO_M_E13038_F22_scaffold_3 12474 12615" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9893564..9895054) /note="source:CACAO_M_S_E145698_F277_scaffold_11 3345 4835" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9895064..9895413 /note="source:scaffold_9_CACTA_0929 8146 8535" /mobile_element_type="transposon:TIR/CACTA" mobile_element 9895737..9896220 /note="source:CACAO_M_S_E85177_F5_scaffold_7 17615 18111" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9896230..9897170 /note="source:CACAO_M_E45017_F15_scaffold_6 3483 4424" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9897143..9897174) /note="source:CACAO_M_E11415_F328_scaffold_2 13785 13817" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9897175..9902385 /note="source:CACAO_M_E35202_F86_scaffold_5 1 5211" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9902486..9906670 /note="source:CACAO_M_E35202_F86_scaffold_5 5212 9396" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9906673..9909398 /note="source:INTACT641F_F364_scaffold_5-int 4489 7213" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9907401..9913046) /note="source:CACAO_M_S_E5046_F335_scaffold_1 4114 13936" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9912526..9914028 /note="source:INTACT30F_F12_scaffold_1-int 13210 14712" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9913940..9914051 /note="source:scaffold_6_CACTA_0710 15745 15854" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(9918029..9918752) /note="source:CACAO_M_E42130_F15_scaffold_5 2855 3608" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9921462..9931942 /note="source:INTACT152_F15_scaffold_5-int 1 10481" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9931784..9931961) /note="source:CACAO_M_E42589_F12_scaffold_5 5149 5327" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9932298..9940063 /note="source:CACAO_LINE_E_132_scaffold_5 1 7766" /mobile_element_type="retrotransposon:LINE/L1" mobile_element complement(9940115..9941295) /note="source:INTACT137_F12_scaffold_9-int 143 1139" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9941296..9943922 /note="source:CACAO_M_S_E53028_F144_scaffold_5 1 2627" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9943924..9948993 /note="source:INTACT127_F12_scaffold_6-int 927 6001" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9948994..9951618) /note="source:INTACT125_F13_scaffold_10-int 2080 6129" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9951619..9955795) /note="source:INTACT137_F12_scaffold_9-int 1 4180" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9955796..9964214) /note="source:CACAO_M_E59541_F5_scaffold_9 1541 9937" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9964215..9966427) /note="source:CACAO_M_E35811_F12_scaffold_5 13891 17644" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9966661..9967815) /note="source:CACAO_M_E3248_F5_scaffold_1 384 1533" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9967812..9971005) /note="source:INTACT1327F_F381_scaffold_8-int 6041 9257" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9970986..9971301) /note="source:CACAO_M_S_E4591_F5_scaffold_1 1 316" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9975106..9977911 /note="source:CACAO_M_E14113_F106_scaffold_3 16787 19584" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9978253..9978987) /note="source:CACAO_M_S_E101631_F270_scaffold_9 18893 19620" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9981463..9981549 /note="source:CACAO_M_E86305_F7_scaffold_15 6217 6302" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9981472..9984091) /note="source:INTACT410F_F357_scaffold_4-int 1 2397" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9983820..9989167 /note="source:CACAO_M_S_E53041_F7_scaffold_5 1 8114" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9988453..9991483) /note="source:CACAO_M_S_E101631_F270_scaffold_9 2850 5872" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9991351..9991500 /note="source:INTACT170_F12_scaffold_5-int 1178 1328" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 9992291..9993199 /locus_tag="TCM_023033" /note="dbxref CacaoGD:Thecc1EG023033" mRNA 9992291..9993199 /locus_tag="TCM_023033" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023572t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.44 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g01776t00002_G2" CDS 9992478..9992990 /locus_tag="TCM_023033" /note="paralog of Thecc1EG023572t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08514.1" /translation="MKRKRERKNCERGRAKRMVLLHFEERKREFLLQFWRKKKAENFE VGKLIFFKLIAGIFEVSMADFGVENSRFLLLKLCEFAAGNFGGFAAIKGQQSAANLCR KIGAICCQFVQKHWSCLCKKIGVVCCRKIRTVCAEKLELFAANLCRKIGQHCAANLRE KKTAWCCQIF" mobile_element 9992522..9992617 /note="source:INTACT563_F255_scaffold_10-int 1140 1248" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(9993394..9993496) /note="source:CACAO_M_S_E101631_F270_scaffold_9 17307 17460" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9993497..9993640 /note="source:INTACT224_F176_scaffold_8-int 2873 3014" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9993741..9993893 /note="source:INTACT224_F176_scaffold_8-int 3029 3176" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9994059..9994649) /note="source:CACAO_M_S_E119431_F7_scaffold_9 730 1318" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9995455..9995943) /note="source:CACAO_M_S_E101631_F270_scaffold_9 2365 2855" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 9995505..9996645 /note="source:INTACT224_F176_scaffold_8-int 4385 5492" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9996646..9997523 /note="source:CACAO_M_S_E5336_F7_scaffold_1 1 877" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9997524..9999472 /note="source:INTACT1429F_F322_scaffold_9-int 1 1698" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9999270..9999682) /note="source:INTACT170_F12_scaffold_5-int 4645 4922" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(9999862..10000216) /note="source:INTACT170_F12_scaffold_5-int 1537 1902" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 9999905..10004595 /note="source:CACAO_M_E14347_F12_scaffold_3 9453 13566" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10004698..10006791 /note="source:INTACT1440F_F102_scaffold_9-int 7483 9488" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10007463..10008292 /note="source:INTACT93F_F345_scaffold_2-int 16833 17669" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10008288..10010404 /note="source:CACAO_M_E14672_F7_scaffold_3 869 2994" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10010405..10011440) /note="source:INTACT410F_F357_scaffold_4-int 1 1690" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10011394..10011449 /note="source:INTACT224_F176_scaffold_8-int 2512 2563" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10011718..10011806) /note="source:CACAO_M_S_E101631_F270_scaffold_9 15584 15671" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10014576..10014847 /note="source:CACAO_M_E14113_F106_scaffold_3 11581 11866" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10015235..10015307 /note="source:CACAO_M_E14113_F106_scaffold_3 12066 12137" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10015604..10015945 /note="source:CACAO_M_E14113_F106_scaffold_3 12426 12751" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10015981..10016119) /note="source:CACAO_M_E14113_F106_scaffold_3 12427 12562" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10016237..10019129) /note="source:CACAO_M_E85210_F12_scaffold_10 7341 10223" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10019126..10028433) /note="source:CACAO_M_S_E99574_F14_scaffold_9 6850 17251" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10028434..10031423) /note="source:CACAO_M_E4498_F7_scaffold_2 1 2986" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10031424..10032457) /note="source:CACAO_M_S_E99574_F14_scaffold_9 11069 12071" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10034561..10034652 /note="source:CACAO_M_E5702_F90_scaffold_2 2037 2128" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10034571..10036508) /note="source:CACAO_M_E33282_F13_scaffold_4 7742 9078" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 10040693..10044803 /locus_tag="TCM_023041" /note="dbxref CacaoGD:Thecc1EG023041" mRNA join(10040693..10041959,10044494..10044803) /locus_tag="TCM_023041" /product="AGAMOUS-like 48, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06850.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023006t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s06850.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.30 coverage" CDS 10040773..10041837 /locus_tag="TCM_023041" /note="paralog of Thecc1EG023006t1" /codon_start=1 /product="AGAMOUS-like 48, putative" /protein_id="EOY08515.1" /db_xref="Phytozome:POPTR_0016s06850.1" /db_xref="TAIR:AT2G40210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C8G5" /translation="MARRKVKLAWIANDSARRASLKKRRLGLLKKVSELTTLCGVDAC VIIYSPDKTEPVVWPSHDVMQQQLARFQSMPESERQKKMTNQDTYLREKVTKAQEQLT QCQRRNKEVEMTHLMHQINQGKELDELNLSELHGLIWFVEEKINQIRKRIEFFLQVPF APAGAPYHPHLPLPPQGPAVNETARIGSGSAGHGGDGRTHTEPSLWDQWLIDMMNHNE HKSAGSSRIRSDVGLPYHPFAGSAADDPGMPGHSFAGSSSGAAHTGLPPMSFRQQGAG ASDMGLSRASSIGGSGFGPLGSDIGLGLHPLSGDVRRSSAGSELGLPHFRSLGGSSSG AGSDIGLPFDGKTWPNNFSP" gene 10044546..10046020 /locus_tag="TCM_023043" /note="dbxref CacaoGD:Thecc1EG023043" mRNA 10044546..10046020 /locus_tag="TCM_023043" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1667t3" CDS 10045092..10045928 /locus_tag="TCM_023043" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08516.1" /translation="MKIFSKTLCATDINRRCAVGMNYFKMERFPKLQGHYKVDFVVKD ESGRKWIFCCSTRITKNPNHPKHPKPVLIKEWIPFVRSKKLCVGDRVTIYAELDEIGS TNYRVKVDKRTSPSKAASSHVMNHNPDGDNSSSSHNSDNESKATFQPSRDLLPEVLNR DLGGTTAATGSSFDKEQLPTNHSIFQVIKCYKTERSLSLELTLKPTMTRGSTAATSSC IYTEQTPNPHSTSRDIKCDKITRPSLNLSLELALTPTMTGRPHHAYMQWTEPKTMNFF GS" gene complement(10046897..10048741) /locus_tag="TCM_023045" /note="dbxref CacaoGD:Thecc1EG023045" mRNA complement(join(10046897..10047562,10047652..10047759, 10048221..10048741)) /locus_tag="TCM_023045" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29333.m001064" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041214t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s06840.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g07484t00001" CDS complement(join(10047251..10047562,10047652..10047759, 10048221..10048532)) /locus_tag="TCM_023045" /note="paralog of Thecc1EG041214t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08517.1" /db_xref="Phytozome:POPTR_0016s06840.1" /db_xref="TAIR:AT3G44150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0DPZ9" /translation="MEKPAAYFLLLLMTAATAPLLVESSDDTNHAYTPCSDTKIQLSD GFTFGIAFASRQSFFFNSSLQLSPCDRRLSLSNSNSRVALFRPKVDEISLLTINTSSF SPDSVGGYMVAFAGRKYAARSLPAFVANNTYTVTSFTLVLEFKKGRLQNLYWKRDGCA QCSGKSNFVCLNKQDCAISTNNCKNHGGSVDCSLGIQLAFSGTDKHLSVLNSWYEVEN LRQYSLYGLYSNLRDSLSSQYNKIL" mobile_element 10052403..10053078 /note="source:INTACT135F_F90_scaffold_2-int 13195 13903" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10057315..10063397) /note="source:CACAO_M_S_E99574_F14_scaffold_9 11086 17179" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10063391..10065249 /note="source:CACAO_M_S_E119615_F3_scaffold_9 4429 6287" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10065350..10065646 /note="source:CACAO_M_S_E119615_F3_scaffold_9 6854 7152" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10065642..10065682 /note="source:INTACT116_F12_scaffold_7-int 1040 1080" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10065647..10065685) /note="source:CACAO_M_E5800_F12_scaffold_2 20001 20039" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10065740..10065796) /note="source:CACAO_M_E12891_F22_scaffold_3 3877 3928" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10068382..10070120 /note="source:CACAO_M_S_E83372_F14_scaffold_6 3038 4755" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 10074651..10075336 /locus_tag="TCM_023049" /note="dbxref CacaoGD:Thecc1EG023049" mRNA 10074651..10075336 /locus_tag="TCM_023049" /product="RING/U-box superfamily protein" /inference="alignment:exonerate-protein:2:frave:gene18280" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023050t1" /inference="similar to AA sequence:frave:gene18280" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3816t1" CDS 10074724..10075224 /locus_tag="TCM_023049" /note="dbxref frave:gene18280; paralog of Thecc1EG023050t1" /codon_start=1 /product="RING/U-box superfamily protein" /protein_id="EOY08518.1" /db_xref="TAIR:AT5G06490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HVJ1" /translation="MNSTTDSGGFLGSNNIGGFGYGIGVSVGILLLITTITLASYFCT RTPPPQAPPRARQEPTLDPESLVVDLGLDEETIKSYPKLLYSEAKLHNKDSTSSCCSI CLADYKSSDTLRLLPDCNHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEVVPL SSRPGG" gene 10076218..10092402 /locus_tag="TCM_023050" /note="dbxref CacaoGD:Thecc1EG023050" mRNA join(10076218..10076273,10076458..10077010, 10083694..10084272,10092381..10092402) /locus_tag="TCM_023050" /product="RING/U-box superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g36170.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023049t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s06820.1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.49 coverage" CDS join(10076257..10076273,10076458..10076797) /locus_tag="TCM_023050" /note="paralog of Thecc1EG023049t1" /codon_start=1 /product="RING/U-box superfamily protein" /protein_id="EOY08519.1" /db_xref="Phytozome:POPTR_0016s06820.1" /db_xref="TAIR:AT2G35910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HVJ1" /translation="MQSYFRARQEPTLDPESLVVDLGLDEETIKSYPKLLYSEAKLHN KDSTSSCCSICLADYKGSDTLRLLPDCNHLFHLKCVDPWLRLHPTCPVCRTSLIPTPL STPLAEVVPLSSRPGG" mobile_element complement(10079039..10080208) /note="source:CACAO_M_S_E32752_F12_scaffold_4 2468 3641" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10080176..10080213) /note="source:INTACT263_F12_scaffold_6-int 7149 7186" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10080682..10083047) /note="source:CACAO_M_E33282_F13_scaffold_4 12521 14868" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10081213..10085607 /note="source:CACAO_M_E12537_F13_scaffold_3 529 4957" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10085594..10086799) /note="source:CACAO_M_S_E19828_F19_scaffold_3 2724 3916" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10086793..10087071 /note="source:INTACT506_F233_scaffold_3-int 2720 2998" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10087069..10091707 /note="source:CACAO_M_S_E84376_F22_scaffold_6 12006 16712" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10092023..10092290 /note="source:CACAO_M_S_E85473_F233_scaffold_7 903 1170" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10092284..10092389 /note="source:INTACT506_F233_scaffold_3-int 10010 10104" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10092390..10097739) /note="source:INTACT447_F13_scaffold_6-int 1 5391" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10098068..10098906) /note="source:CACAO_M_E33977_F20_scaffold_4 15686 16538" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10099499..10099736) /note="source:scaffold_1_CACTA_0009 12935 13169" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10099737..10105346 /note="source:CACAO_on_S_E176_scaffold_5 4 5836" /mobile_element_type="transposon:TIR/Mutator" mobile_element 10105347..10107920 /note="source:CACAO_M_E35236_F144_scaffold_5 1 2574" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10107921..10110615 /note="source:CACAO_Mutator_E1149_scaffold_5 10997 13689" /mobile_element_type="transposon:TIR/Mutator" mobile_element 10110616..10113620 /note="source:CACAO_M_E35237_F277_scaffold_5 1 3005" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10113621..10114189 /note="source:scaffold_1_CACTA_0009 13263 13828" /mobile_element_type="transposon:TIR/CACTA" gene complement(10114371..10119263) /locus_tag="TCM_023060" /note="dbxref CacaoGD:Thecc1EG023060" mRNA complement(join(10114371..10114796,10115241..10115350, 10115485..10115537,10117135..10117219,10117637..10117707, 10117900..10118070,10119032..10119263)) /locus_tag="TCM_023060" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(10114520..10114796,10115241..10115350, 10115485..10115537,10117135..10117219,10117637..10117707, 10117900..10118070,10119032..10119224)) /locus_tag="TCM_023060" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08520.1" /translation="MGKEKARFDNGSRFSMLENDQGEDVEVVEEVDHKVTKVKEGTYP MQGTDKGHSRNSIPKFRQVDGSNWFLIAVYGNSNPAGRKRLWEKLLVFASELYGPWLV TDDFNAFLFSHEKMGGSQRDHRPLVIELSNKQNTQVQAKFHFQDVLQAQTVTLVKKLY SKENEWSPTYPIRELVASVELVNERDLGHVQVLTTSGMFTVASAYEYLRTALLQEFAL DSSGMWNVACISDQVSKREEVFIGGKPPPVGCYVVNLERACRHSLGLVTAGGAICDEN GQWQAGYAVKLGSCLAYKVELWGLYYGLKTCMGFKAQKTLAPS" gene 10125009..10127779 /locus_tag="TCM_023063" /note="dbxref CacaoGD:Thecc1EG023063" mRNA join(10125009..10125232,10125489..10125590, 10125862..10126022,10127420..10127779) /locus_tag="TCM_023063" /product="MD-2-related lipid recognition domain-containing protein / ML domain-containing protein" /inference="alignment:exonerate- protein:2:ricco:29333.m001066" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041207t1" /inference="similar to AA sequence:ricco:29333.m001066" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00459t00002" CDS join(10125133..10125232,10125489..10125590, 10125862..10126022,10127420..10127527) /locus_tag="TCM_023063" /note="dbxref ricco:29333.m001066; paralog of Thecc1EG041207t1" /codon_start=1 /product="MD-2-related lipid recognition domain-containing protein / ML domain-containing protein" /protein_id="EOY08521.1" /db_xref="TAIR:AT3G11780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FG22" /translation="MEMIQYNRFIAPFLLLSLCLLVPWTVANDVKYCDKTTEYDVKVQ AVEISPNPIARGKPATFSISATTGSAIAGGKLVIEVSYFGWHIHSETHDLCDETSCPV STGDFVVSHSQVLPGFTPPGSYSLKMRMYDAKKHELTCIGFDFDIGFASSVADS" gene 10128074..10130143 /locus_tag="TCM_023064" /note="dbxref CacaoGD:Thecc1EG023064" mRNA join(10128074..10128206,10128896..10130143) /locus_tag="TCM_023064" /product="Glutaredoxin family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01022568001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044369t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s21590.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc956t1" CDS 10128923..10129789 /locus_tag="TCM_023064" /note="paralog of Thecc1EG044369t1" /codon_start=1 /product="Glutaredoxin family protein, putative" /protein_id="EOY08522.1" /db_xref="Phytozome:POPTR_0006s21590.1" /db_xref="TAIR:AT5G06470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RL44" /translation="MKGMKGRFLKKLKFIPTISTLKQGLVLQLNPQHTFANQNCHSLS VYKEQDCKSNVDLPESVVDLKDQKDEETELEFEVGDQDSITPSTEFKDIVTSKDNSQL PISSEIIVKDDSIPEGKVDSEEHPSLIDFEEKCPPGGEESVIFYTTSLRGIRKTFEDC SSIRFLLDSFKILVHERDVSMDKEFREELWRILGGRVIPPKLFIKGRYIGGADEVVGL HEQGKLKKLLEGIPSGVPNCLCTGCANMRFLVCSNCNGSRKVYAEKEGDELCMKCPDC NENGLINCPVCC" mobile_element 10139540..10142841 /note="source:CACAO_M_E35238_F82_scaffold_5 1 3302" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10143878..10144144) /note="source:INTACT458_F219_scaffold_7-int 17379 17650" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10144536..10144618 /note="source:INTACT345_F202_scaffold_1-int 766 854" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10145096..10145573 /note="source:INTACT345_F202_scaffold_1-int 1402 1849" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10145302..10150066) /note="source:INTACT458_F219_scaffold_7-int 11581 16378" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10150035..10151239) /note="source:CACAO_M_S_E99214_F90_scaffold_9 8758 9964" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10151341..10152736 /note="source:INTACT778_F53_scaffold_5-int 5624 7022" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10152737..10161678 /note="source:INTACT666_F293_scaffold_9-int 6439 15428" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10161186..10161814) /note="source:CACAO_M_E12044_F76_scaffold_2 6528 7195" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10162058..10162232 /note="source:INTACT666_F293_scaffold_9-int 15378 15563" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10162674..10163103 /note="source:INTACT345_F202_scaffold_1-int 1402 1827" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10162881..10163610) /note="source:INTACT61_F128_scaffold_2-int 669 1394" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10163611..10166729 /note="source:CACAO_M_E35241_F115_scaffold_5 1 3119" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10166730..10167400) /note="source:INTACT61_F128_scaffold_2-int 1 673" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10169037..10169079 /note="source:CACAO_M_S_E122138_F207_scaffold_10 7189 7231" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10170022..10171412 /note="source:CACAO_M_E53201_F9_scaffold_8 10989 12412" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(10173528..10178055) /locus_tag="TCM_023073" /note="dbxref CacaoGD:Thecc1EG023073" mRNA complement(join(10173528..10175234,10175692..10176372, 10176478..10176633,10177408..10178055)) /locus_tag="TCM_023073" /product="F26K24.5 protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s21580.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s21580.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3853t1" CDS complement(join(10174095..10175234,10175692..10176372, 10176478..10176633,10177408..10177743)) /locus_tag="TCM_023073" /codon_start=1 /product="F26K24.5 protein" /protein_id="EOY08523.1" /db_xref="Phytozome:POPTR_0006s21580.1" /db_xref="TAIR:AT3G11760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SF22" /translation="MVVKMMRWRPWPPLVSKKYEVKLIVRRLEGWDLVGEGSEKSQKL TVEIRWKGPKASLSSLRRTVKRNFTKEVDGVDENGAVVWDEEFQTVCSLSAYKENVFH PWEIAFSVLNGLNQGPKNKVPVVGTVSLNLAEYASAAEQKEFELNIPLILSNGAAEPG PQLCISLSLLELRTAQDTTEPVQRALVPVASPSQSCETVSMEKDELSAIKAGLRKVKI FTEYVSTRRAKKACREDECSEGRCSARSDDGEYPLDTDSLDDFDEGESDEVKDDSVVR KSFSYGTLASANYAGGSFYSSMRINEEGEDWVYYSNRKSDVGCSNVEDSAASVSEPSL LQSSKRSILSWRKRKLSFRSPKAKGEPLLKKAYGEEGGDDIDFDRRQLSSDESHAHGW HKTDEDSSANRSSVSEFGDDNFAIGSWEQKEVVSRDGHMKLQAQVFFASIDQRSERAA GESACTALVAVIADWFQNNRDLMPIKSQFDSLIREGSLEWRNLCENETYRERFPDKHF DLETVLQAKLRPLSVVPRKSFIGFFHPEGMDEGRFDFLHGAMSFDNIWDEISRAGAEC PNTGEPQVYIVSWNDHFFILKVEPEAYYIIDTLGERLYEGCNQAYILKFDCNTVIHKL PNVAQSSDDKSTSDQQIATAAAEPKNSQVQQVNRKEEGPAAGAIATKPEESIKSEERE EVVCQGKESCKEYIKSFLAAIPIRELQADIKKGLMASTPLHHRLQIDFNYTEFLQSLP ETSATPMTTATQMTTATPLSVEVPLTEVAA" mobile_element 10185756..10186252 /note="source:INTACT1427F_F390_scaffold_9-int 1 507" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10186266..10186685 /note="source:INTACT1427F_F390_scaffold_9-int 1674 2089" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10187083..10199088) /note="source:INTACT556_F252_scaffold_2-int 2968 15025" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10197089..10200053 /note="source:INTACT458_F219_scaffold_7-int 12944 15950" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10200250..10200432) /note="source:INTACT666_F293_scaffold_9-int 16277 16458" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10201087..10201577 /note="source:INTACT1391F_F387_scaffold_8-int 14182 14686" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10201578..10201940) /note="source:INTACT591_F264_scaffold_1-int 16935 17300" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10201944..10204892) /note="source:CACAO_M_E3884_F22_scaffold_1 7035 9910" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10205098..10205442) /note="source:INTACT591_F264_scaffold_1-int 10357 10698" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10212906..10212918) /note="source:CACAO_M_E58819_F24_scaffold_9 15397 15444" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10212919..10212987) /note="source:scaffold_2_CACTA_0256 2657 2725" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10212988..10212998) /note="source:CACAO_M_E58819_F24_scaffold_9 15346 15396" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10220240..10220413 /note="source:CACAO_M_E3884_F22_scaffold_1 13022 13200" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10220490..10223418 /note="source:CACAO_M_E35255_F273_scaffold_5 1 2929" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10223558..10223710 /note="source:CACAO_M_E3884_F22_scaffold_1 13217 13363" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10225296..10226109 /note="source:CACAO_M_E12297_F14_scaffold_3 6343 7157" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10227189..10227516) /note="source:INTACT215_F33_scaffold_4-int 8773 9100" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10227617..10228308 /note="source:CACAO_M_E12297_F14_scaffold_3 10330 11021" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10228409..10229164 /note="source:CACAO_M_E12297_F14_scaffold_3 8895 9651" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10233820..10234662 /note="source:CACAO_M_E12297_F14_scaffold_3 7798 8634" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10234763..10234916 /note="source:CACAO_M_E58819_F24_scaffold_9 15771 15912" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10236791..10237132) /note="source:INTACT542_F243_scaffold_4-int 2969 3328" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10238142..10238218 /note="source:CACAO_M_E3626_F245_scaffold_1 2947 3024" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10238846..10240357) /note="source:CACAO_M_S_E83372_F14_scaffold_6 6029 7493" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10243269..10251284) /note="source:CACAO_M_S_E83691_F15_scaffold_6 3576 10825" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10251385..10251514) /note="source:CACAO_M_E53348_F15_scaffold_8 2017 2146" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10251514..10252280) /note="source:CACAO_M_E4905_F15_scaffold_2 629 1395" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10252279..10253668 /note="source:CACAO_M_E13466_F15_scaffold_3 1452 2836" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10253669..10257026) /note="source:CACAO_M_E69608_F15_scaffold_9 21 3371" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10255027..10257042 /note="source:CACAO_M_S_E146162_F15_scaffold_12 812 2819" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10258070..10258766 /note="source:INTACT189_F49_scaffold_5-int 1 710" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10258988..10261941 /note="source:CACAO_M_E35263_F15_scaffold_5 1 2954" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10261942..10262548) /note="source:CACAO_M_E58324_F9_scaffold_9 9703 10298" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10262754..10264939 /note="source:CACAO_M_S_E5046_F335_scaffold_1 508 2626" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10266075..10266790 /note="source:scaffold_8_CACTA_0859 16741 17470" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10267474..10267525 /note="source:CACAO_M_E11098_F15_scaffold_2 9195 9247" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10271193..10272070 /note="source:CACAO_M_E5899_F5_scaffold_2 19646 20509" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10272071..10275191 /note="source:CACAO_M_E35265_F115_scaffold_5 1 3121" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10275192..10275277 /note="source:CACAO_M_E5899_F5_scaffold_2 20488 20573" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10278524..10279760 /note="source:INTACT280_F60_scaffold_5-int 9243 10498" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10279739..10280454 /note="source:CACAO_M_E1841_F5_scaffold_1 15772 16800" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10280500..10281322 /note="source:INTACT616_F52_scaffold_1-int 1 837" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10281320..10282089 /note="source:INTACT135_F42_scaffold_4-int 10147 10895" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10282190..10282748 /note="source:INTACT616_F52_scaffold_1-int 745 1314" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10284100..10284775) /note="source:CACAO_M_E86052_F15_scaffold_12 4117 4793" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10284774..10285153) /note="source:CACAO_M_S_E52921_F60_scaffold_5 18417 18810" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10285168..10285314 /note="source:INTACT280_F60_scaffold_5-int 18874 19022" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 10290551..10299429 /locus_tag="TCM_023086" /note="dbxref CacaoGD:Thecc1EG023086" mRNA join(10290551..10291324,10291679..10291888, 10292272..10292413,10293520..10293579,10293669..10293764, 10294013..10294351,10294436..10294576,10294961..10295131, 10295429..10295686,10296279..10296427,10296661..10297215, 10297401..10297674,10298519..10299429) /locus_tag="TCM_023086" /product="Ubiquitin-specific protease 8 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29333.m001070" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041174t2" /inference="similar to AA sequence:ricco:29854.m001132" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3855t2" mRNA join(10290551..10290861,10291021..10291324, 10291679..10291888,10292272..10292413,10293520..10293579, 10293669..10293764,10294436..10294576,10294961..10295131, 10295429..10295686,10296279..10296427,10296661..10297215, 10297401..10297674,10298519..10299429) /locus_tag="TCM_023086" /product="Ubiquitin-specific protease 8 isoform 3" /inference="alignment:exonerate- protein:2:ricco:29333.m001070" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041174t2" /inference="similar to AA sequence:ricco:29854.m001132" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:PASA:2:TSA:puevd3b022349t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3855t2" mRNA join(10290551..10290861,10291021..10291324, 10291679..10291888,10292357..10292413,10293520..10293579, 10293669..10293764,10294013..10294351,10294436..10294576, 10294961..10295131,10295429..10295686,10296279..10296427, 10296661..10297215,10297401..10297674,10298519..10299429) /locus_tag="TCM_023086" /product="Ubiquitin-specific protease 8 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29333.m001070" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041174t2" /inference="similar to AA sequence:Phytozome:GSVIVT01022582001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:PASA:2:TSA:puevd3b022349t1a3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3855t2" CDS join(10291005..10291324,10291679..10291888, 10292272..10292413,10293520..10293579,10293669..10293764, 10294013..10294351,10294436..10294576,10294961..10295131, 10295429..10295686,10296279..10296427,10296661..10297215, 10297401..10297674,10298519..10298635) /locus_tag="TCM_023086" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29854.m001132; paralog of Thecc1EG041174t2" /codon_start=1 /product="Ubiquitin-specific protease 8 isoform 1" /protein_id="EOY08524.1" /db_xref="TAIR:AT5G22030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C585" /translation="MNGLAEKLNFSIIIAKTTTRLLSVKVANLSIPAVRLFKAVLSKA LRALFFFSMDDSFSSEDDDHLFDLDYHPYARKRPLSSRLDRDEHDETDDEETNRQKLY LVPYRWWKETQRSVADQIGGILYTVLSNDNYADSQIVLELRKEESSGDRVKAEEGVSG RAYALVNEALWLQTLKWHNDSKASENDARNHIVAEDQSQEVFLLQIRLSFSPETNSLL VKISLKDNTVNLYQRACCIFSSESELLQIWDFSGQTSQFVMNEIINLPNISSGKPGKE TLLELHVNGFFVTTTETNERSAELSRTENSLGKSQVKTNGSSDNLSLMLTDASPSGSG YRGIGLLGLTGLQNLGNTCFMNSAIQCLVHTPQLVDYFLGDYQKDINYKNPLGMNGEL ALAFGELLRKLWAPGAVPVAPRMFKCKLAKFAPQFSGYNQHDSQEFLAFLLDGLHEDL NRVKCKPYIEAKDAEGCPDEEVADEYWRNHLARNDSIIVDVCQGQYRSTLVCPVCKKV SVTFDPFMYVTLPLPSTTMRTMTLTVFSTDGIMLPTPFTIAVPKCGRLKDLIDTLSVA CSLRNDETLLVAEIYKNQIFRLLDEPSDSLALIRDDDKLVAYRLPKVSETYPLVVFLH QQVERSYSFGVVASNWKPFGVPLVARIQDLSSGSEIRNQFLKLLCPFLMPVEDVVNDY DGNETGNTVNENSKMEDIVSPLVSDSDVGSDSGAENDFRLNTDFKFYLINKLEPLEIK MNKPVSISRFTKKFDVSVHWSEKMMEKYDTCLLSSLPEVFKPQLFTRRPQESISLNKC LEGFLQEEPLGPDDMWYCPRCKKPRQANKKLDLWRLPEILVIHLKRFSYNRFFKNKLE TFVDFPIHDLNLSNYISHIDSQLSNCYQLYAISNHYGGMGGGHYTAFVDHGHSRWFEF DDDKVFAVSEDRIKSSAAYVLFYRRVREA" CDS join(10291161..10291324,10291679..10291888, 10292272..10292413,10293520..10293579,10293669..10293764, 10294436..10294576,10294961..10295131,10295429..10295686, 10296279..10296427,10296661..10297215,10297401..10297674, 10298519..10298635) /locus_tag="TCM_023086" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29854.m001132; paralog of Thecc1EG041174t2" /codon_start=1 /product="Ubiquitin-specific protease 8 isoform 3" /protein_id="EOY08526.1" /translation="MDDSFSSEDDDHLFDLDYHPYARKRPLSSRLDRDEHDETDDEET NRQKLYLVPYRWWKETQRSVADQIGGILYTVLSNDNYADSQIVLELRKEESSGDRVKA EEGVSGRAYALVNEALWLQTLKWHNDSKASENDARNHIVAEDQSQEVFLLQIRLSFSP ETNSLLVKISLKDNTVNLYQRACCIFSSESELLQIWDFSGQTSQFVMNEIINLPNISS GKPGKEGELALAFGELLRKLWAPGAVPVAPRMFKCKLAKFAPQFSGYNQHDSQEFLAF LLDGLHEDLNRVKCKPYIEAKDAEGCPDEEVADEYWRNHLARNDSIIVDVCQGQYRST LVCPVCKKVSVTFDPFMYVTLPLPSTTMRTMTLTVFSTDGIMLPTPFTIAVPKCGRLK DLIDTLSVACSLRNDETLLVAEIYKNQIFRLLDEPSDSLALIRDDDKLVAYRLPKVSE TYPLVVFLHQQVERSYSFGVVASNWKPFGVPLVARIQDLSSGSEIRNQFLKLLCPFLM PVEDVVNDYDGNETGNTVNENSKMEDIVSPLVSDSDVGSDSGAENDFRLNTDFKFYLI NKLEPLEIKMNKPVSISRFTKKFDVSVHWSEKMMEKYDTCLLSSLPEVFKPQLFTRRP QESISLNKCLEGFLQEEPLGPDDMWYCPRCKKPRQANKKLDLWRLPEILVIHLKRFSY NRFFKNKLETFVDFPIHDLNLSNYISHIDSQLSNCYQLYAISNHYGGMGGGHYTAFVD HGHSRWFEFDDDKVFAVSEDRIKSSAAYVLFYRRVREA" CDS join(10291886..10291888,10292357..10292413, 10293520..10293579,10293669..10293764,10294013..10294351, 10294436..10294576,10294961..10295131,10295429..10295686, 10296279..10296427,10296661..10297215,10297401..10297674, 10298519..10298635) /locus_tag="TCM_023086" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG041174t2" /codon_start=1 /product="Ubiquitin-specific protease 8 isoform 2" /protein_id="EOY08525.1" /db_xref="Phytozome:GSVIVT01022582001" /db_xref="TAIR:AT5G22030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C585" /translation="MIRLSFSPETNSLLVKISLKDNTVNLYQRACCIFSSESELLQIW DFSGQTSQFVMNEIINLPNISSGKPGKETLLELHVNGFFVTTTETNERSAELSRTENS LGKSQVKTNGSSDNLSLMLTDASPSGSGYRGIGLLGLTGLQNLGNTCFMNSAIQCLVH TPQLVDYFLGDYQKDINYKNPLGMNGELALAFGELLRKLWAPGAVPVAPRMFKCKLAK FAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYIEAKDAEGCPDEEVADEYWRNH LARNDSIIVDVCQGQYRSTLVCPVCKKVSVTFDPFMYVTLPLPSTTMRTMTLTVFSTD GIMLPTPFTIAVPKCGRLKDLIDTLSVACSLRNDETLLVAEIYKNQIFRLLDEPSDSL ALIRDDDKLVAYRLPKVSETYPLVVFLHQQVERSYSFGVVASNWKPFGVPLVARIQDL SSGSEIRNQFLKLLCPFLMPVEDVVNDYDGNETGNTVNENSKMEDIVSPLVSDSDVGS DSGAENDFRLNTDFKFYLINKLEPLEIKMNKPVSISRFTKKFDVSVHWSEKMMEKYDT CLLSSLPEVFKPQLFTRRPQESISLNKCLEGFLQEEPLGPDDMWYCPRCKKPRQANKK LDLWRLPEILVIHLKRFSYNRFFKNKLETFVDFPIHDLNLSNYISHIDSQLSNCYQLY AISNHYGGMGGGHYTAFVDHGHSRWFEFDDDKVFAVSEDRIKSSAAYVLFYRRVREA" gene 10300188..10302306 /locus_tag="TCM_023087" /note="dbxref CacaoGD:Thecc1EG023087" mRNA join(10300188..10300433,10301402..10301606, 10301950..10302183) /locus_tag="TCM_023087" /product="Dihydroneopterin aldolase isoform 1" /inference="alignment:exonerate-protein:2:frave:gene18270" /inference="similar to AA sequence:frave:gene18270" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g14818t00001" CDS join(10300415..10300433,10301402..10301606, 10301950..10302154) /locus_tag="TCM_023087" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene18270" /codon_start=1 /product="Dihydroneopterin aldolase isoform 1" /protein_id="EOY08527.1" /db_xref="TAIR:AT5G62980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SF23" /translation="MAAPSCGAMTEDVGIPMGDKLILRGLKFHGFHGVKPEEKSLGQK FLVDVDAWMDLRMAGKSDLLSDTVSYTDIYRIVKEVVEGKSQDLLESVAQLIASATLR KHPQISAVRVKVGKPHVAVHGPLDYLGVEIVRYRSIDAPN" mRNA join(10301415..10301606,10301955..10302306) /locus_tag="TCM_023087" /product="Dihydroneopterin aldolase isoform 2" /inference="alignment:exonerate-protein:2:frave:gene18270" /inference="similar to AA sequence:frave:gene18270" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1273t1; inference alignment:Newbler:10:TSA:cgbaP2_g14818t00001" CDS join(10301431..10301606,10301955..10302102) /locus_tag="TCM_023087" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene18270" /codon_start=1 /product="Dihydroneopterin aldolase isoform 2" /protein_id="EOY08528.1" /translation="MGDKLILRGLKFHGFHGVKPEEKSLGQKFLVDVDAWMDLRMAGK SDLLSDTVSYTDIYRKGSCGREISGSSRVSGSINCISNLEEASSDICCSCESGEASCC CSWSS" gene complement(10302440..10306226) /locus_tag="TCM_023088" /note="dbxref CacaoGD:Thecc1EG023088" mRNA complement(join(10302440..10303130,10303216..10303282, 10303638..10303748,10304102..10304263,10305177..10305259, 10305642..10305793,10306020..10306226)) /locus_tag="TCM_023088" /product="Ribosomal protein L22p/L17e family protein" /inference="alignment:exonerate- protein:2:Phytozome:Sb02g006656.1" /inference="similar to AA sequence:Phytozome:GSVIVT01022501001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13746t1" CDS complement(join(10302850..10303130,10303216..10303282, 10303638..10303748,10304102..10304263,10305177..10305259, 10305642..10305765)) /locus_tag="TCM_023088" /codon_start=1 /product="Ribosomal protein L22p/L17e family protein" /protein_id="EOY08529.1" /db_xref="Phytozome:GSVIVT01022501001" /db_xref="TAIR:AT4G28360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LDU0" /translation="MVGWQRHLQCVLRQVGRRLEHNYTLSANHSSSSRLSSSFLTGEL PSIQRLWRSPSASISTPFYQYFQQLGISTSRKLLAGSSEETPISSPLTPVLAINSGKT EEKKVVPNRSKVQAVLKNIKQSPKKVNLVAALVRGMRVEDALLQLQVTVKRAAKTVYQ VIHSARANATHNHGLDPDRLLVAEAFIGKGFYKKRISYHAKGKCGIKERPECRLTVVV REMTPEEEAEIARLRVSKFRKLTKRERRLVPHKLIETTPIWNRKGKGSSQEPSGMAA" mobile_element 10309115..10314618 /note="source:CACAO_M_E35271_F316_scaffold_5 1 5504" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(10314677..10318847) /locus_tag="TCM_023089" /note="dbxref CacaoGD:Thecc1EG023089" mRNA complement(join(10314677..10315974,10316058..10316398, 10316501..10316633,10316712..10317052,10318195..10318303, 10318658..10318847)) /locus_tag="TCM_023089" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29848.m004523" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004738t1" /inference="similar to AA sequence:Phytozome:Glyma10g10440.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06324t00001" mRNA complement(join(10314677..10315974,10316058..10316398, 10316501..10316633,10316712..10317052,10317940..10318103)) /locus_tag="TCM_023089" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29848.m004523" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004738t1" /inference="similar to AA sequence:Phytozome:Glyma10g10440.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:PASA:2:TSA:puevd3b022352t1a2; inference alignment:Newbler:10:TSA:cgbaB_g06324t00001" mRNA complement(join(10315081..10315974,10316058..10316398, 10316501..10316645,10316711..10317020,10317884..10318034)) /locus_tag="TCM_023089" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:29848.m004523" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004738t1" /inference="similar to AA sequence:Phytozome:Glyma02g34950.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc165t6; inference alignment:Newbler:10:TSA:cgbaB_g06324t00001" mRNA complement(join(10315081..10315974,10316058..10316398, 10316501..10317020,10317884..10318034)) /locus_tag="TCM_023089" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:29848.m004523" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004738t1" /inference="similar to AA sequence:Phytozome:Glyma02g34950.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc165t3; alternateUTRof:Thecc1EG023089t3; inference alignment:Newbler:10:TSA:cgbaB_g06324t00001" mRNA complement(join(10315093..10315974,10316058..10316398, 10316501..10317052,10318195..10318254)) /locus_tag="TCM_023089" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:29848.m004523" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004738t1" /inference="similar to AA sequence:Phytozome:Glyma02g34950.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3857t2; alternateUTRof:Thecc1EG023089t3; inference alignment:Newbler:10:TSA:cgbaB_g06324t00001" CDS complement(join(10315417..10315974,10316058..10316398, 10316501..10316633,10316712..10317052,10318195..10318303, 10318658..10318660)) /locus_tag="TCM_023089" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG004738t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY08530.1" /db_xref="Phytozome:Glyma10g10440.1" /db_xref="TAIR:AT4G02210.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SAW9" /translation="MEKPSQTRLFPLLSTDNPIPHFARKRLEAAITAQSQRGKEMEDD SLSDTDNVRANWTPPQDQFFVELLVEQVQMRNKTDHAFKQLAWVDMITQFNSKFGFKY DIDVLKNRFKRMRKQYNEMKILLDQSGFKWDEEVQMVKADNNKWDEYLKAHPDMQSYR TKVVPYYTELCVICGHIVADGRYSLSCFDVDFENEEKGADDKTPSSCDRTKIDWTPTM DQYFLELMLDQVHKGNKVGCTLKKKAWVSMITLFNAKFGLQHSRAVLKNRYKILRSQY ASIKTLLTEKGFHWDETQKMVIADDRVWNKYVKEHPEFRRFKNKSMPCYDDMCIICCN ESTSAETRILQCNMSSENGTPGKDIGGRSEPTINIKVAKKVHDKVPAPIVGSKLQEQQ NKHQSQMPRTSHQPKRSRSEEDAMANAVREMAFVVTSIKRKKENENAPTRRVIEELQA IPGIDDDLLLDACDFLEDDRRARMFLALDASLRKKWLMRKLRPQ" CDS complement(join(10315417..10315974,10316058..10316398, 10316501..10316633,10316712..10317044)) /locus_tag="TCM_023089" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG004738t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY08531.1" /db_xref="Phytozome:Glyma10g10440.1" /db_xref="TAIR:AT4G02210.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SAW9" /translation="MEDDSLSDTDNVRANWTPPQDQFFVELLVEQVQMRNKTDHAFKQ LAWVDMITQFNSKFGFKYDIDVLKNRFKRMRKQYNEMKILLDQSGFKWDEEVQMVKAD NNKWDEYLKAHPDMQSYRTKVVPYYTELCVICGHIVADGRYSLSCFDVDFENEEKGAD DKTPSSCDRTKIDWTPTMDQYFLELMLDQVHKGNKVGCTLKKKAWVSMITLFNAKFGL QHSRAVLKNRYKILRSQYASIKTLLTEKGFHWDETQKMVIADDRVWNKYVKEHPEFRR FKNKSMPCYDDMCIICCNESTSAETRILQCNMSSENGTPGKDIGGRSEPTINIKVAKK VHDKVPAPIVGSKLQEQQNKHQSQMPRTSHQPKRSRSEEDAMANAVREMAFVVTSIKR KKENENAPTRRVIEELQAIPGIDDDLLLDACDFLEDDRRARMFLALDASLRKKWLMRK LRPQ" CDS complement(join(10315417..10315974,10316058..10316398, 10316501..10316621)) /locus_tag="TCM_023089" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG004738t1" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY08532.1" /db_xref="Phytozome:Glyma02g34950.1" /db_xref="TAIR:AT4G02210.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SAW9" /translation="MQSYRTKVVPYYTELCVICGHIVADGRYSLSCFDVDFENEEKGA DDKTPSSCDRTKIDWTPTMDQYFLELMLDQVHKGNKVGCTLKKKAWVSMITLFNAKFG LQHSRAVLKNRYKILRSQYASIKTLLTEKGFHWDETQKMVIADDRVWNKYVKEHPEFR RFKNKSMPCYDDMCIICCNESTSAETRILQCNMSSENGTPGKDIGGRSEPTINIKVAK KVHDKVPAPIVGSKLQEQQNKHQSQMPRTSHQPKRSRSEEDAMANAVREMAFVVTSIK RKKENENAPTRRVIEELQAIPGIDDDLLLDACDFLEDDRRARMFLALDASLRKKWLMR KLRPQ" CDS complement(join(10315417..10315974,10316058..10316398, 10316501..10316621)) /locus_tag="TCM_023089" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG004738t1" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY08533.1" /db_xref="Phytozome:Glyma02g34950.1" /db_xref="TAIR:AT4G02210.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SAW9" /translation="MQSYRTKVVPYYTELCVICGHIVADGRYSLSCFDVDFENEEKGA DDKTPSSCDRTKIDWTPTMDQYFLELMLDQVHKGNKVGCTLKKKAWVSMITLFNAKFG LQHSRAVLKNRYKILRSQYASIKTLLTEKGFHWDETQKMVIADDRVWNKYVKEHPEFR RFKNKSMPCYDDMCIICCNESTSAETRILQCNMSSENGTPGKDIGGRSEPTINIKVAK KVHDKVPAPIVGSKLQEQQNKHQSQMPRTSHQPKRSRSEEDAMANAVREMAFVVTSIK RKKENENAPTRRVIEELQAIPGIDDDLLLDACDFLEDDRRARMFLALDASLRKKWLMR KLRPQ" CDS complement(join(10315417..10315974,10316058..10316398, 10316501..10316621)) /locus_tag="TCM_023089" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG004738t1" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY08534.1" /db_xref="Phytozome:Glyma02g34950.1" /db_xref="TAIR:AT4G02210.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SAW9" /translation="MQSYRTKVVPYYTELCVICGHIVADGRYSLSCFDVDFENEEKGA DDKTPSSCDRTKIDWTPTMDQYFLELMLDQVHKGNKVGCTLKKKAWVSMITLFNAKFG LQHSRAVLKNRYKILRSQYASIKTLLTEKGFHWDETQKMVIADDRVWNKYVKEHPEFR RFKNKSMPCYDDMCIICCNESTSAETRILQCNMSSENGTPGKDIGGRSEPTINIKVAK KVHDKVPAPIVGSKLQEQQNKHQSQMPRTSHQPKRSRSEEDAMANAVREMAFVVTSIK RKKENENAPTRRVIEELQAIPGIDDDLLLDACDFLEDDRRARMFLALDASLRKKWLMR KLRPQ" mobile_element 10319844..10320003 /note="source:scaffold_8_CACTA_0859 16172 16346" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10321026..10321251) /note="source:CACAO_M_E5899_F5_scaffold_2 20734 20960" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10321201..10321280 /note="source:INTACT296_F13_scaffold_9-int 13173 13253" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10322439..10325922) /note="source:CACAO_M_E86216_F281_scaffold_13 2367 5023" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10325919..10325996 /note="source:CACAO_M_E70891_F369_scaffold_10 16952 17029" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10325997..10326136 /note="source:scaffold_8_CACTA_0859 16342 16468" /mobile_element_type="transposon:TIR/CACTA" gene 10326922..10337854 /locus_tag="TCM_023090" /note="dbxref CacaoGD:Thecc1EG023090" mRNA join(10326922..10327031,10329448..10329609, 10331784..10332366,10332450..10332550,10333254..10333400, 10333565..10333692,10333830..10333938,10334075..10334114, 10334747..10334836,10334971..10335070,10335173..10335312, 10336037..10336139,10336412..10337082,10337350..10337790) /locus_tag="TCM_023090" /product="Mitotic checkpoint serine/threonine-protein kinase BUB1, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06730.1" /inference="similar to AA sequence:ricco:29333.m001074" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04530t00001" mobile_element 10328841..10328888 /note="source:CACAO_M_E84368_F4_scaffold_10 21293 21340" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10328901..10329216 /note="source:CACAO_M_E84368_F4_scaffold_10 22347 22656" /mobile_element_type="retrotransposon:LTR/Copia" CDS join(10332317..10332366,10332450..10332550, 10333254..10333400,10333565..10333692,10333830..10333938, 10334075..10334114,10334747..10334836,10334971..10335070, 10335173..10335312,10336037..10336139,10336412..10337082, 10337350..10337566) /locus_tag="TCM_023090" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29333.m001074" /codon_start=1 /product="Mitotic checkpoint serine/threonine-protein kinase BUB1, putative isoform 1" /protein_id="EOY08535.1" /db_xref="TAIR:AT5G06440.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SDL8" /translation="MPMFILRLGGLESSGLFILGCWDFSFLILSGFFVQFSLENNLWF DFLRASYVNMERKRVISQYRERLDKTLASAELTNSETLKTLVKNQILRHAQHEKEEFS ETLLDKRAQEVSNFLDMLRSTSIDDHQVSKSSETSHGEWKLKHDNEEFRVMYREGPHG TPFHTLLVEGYVDGPLDVCLCISWESALYKKWWPQSSFPSFKVTSSTCLQKVQIGEQI SLVRVKVAWPLSAREALVHYFFFEYFQDDLIVILVNTISDVSSIDKATHGFTNEGIPE AKDVVRIDLVGGFALQKVTNERSYFRTIANMDMKLDFVPPSLINFISRQLVGNGFRLY QKTVASVSNYDEDYCKALGEPLYTLIHEALYSSNASGEVLEGQERKSEAHLVPNEYLI EGIQDDTHDIKRKVHVNDHAGETPLGKAQDTKRKAFGEIEEEESEESTCLEEGVEAVN QPSTYEFADTNGVNAKKRIYIRPEVEEALGTLEKAISIVRQYGFNAQSRSSSFSDEEP PTLEEGAVEDLAYAADGKVCLKVQVGVEAASIKVAERTLHDSRNSSDINNTRSAGSNS FSREVNHNKVAPATPQQNVSIPVVTNQVALNSIKANGFHENGVHDVKKSTNWRKHRFC CFGFHSG" mRNA join(10334093..10334836,10334971..10335070, 10335173..10335312,10336037..10336139,10336412..10337082, 10337350..10337854) /locus_tag="TCM_023090" /product="Mitotic checkpoint serine/threonine-protein kinase BUB1, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06730.1" /inference="similar to AA sequence:ricco:29333.m001074" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1035t7_C2; inference alignment:Newbler:10:TSA:cgbaP2_g04530t00001" CDS join(10334526..10334836,10334971..10335070, 10335173..10335312,10336037..10336139,10336412..10337082, 10337350..10337566) /locus_tag="TCM_023090" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29333.m001074" /codon_start=1 /product="Mitotic checkpoint serine/threonine-protein kinase BUB1, putative isoform 2" /protein_id="EOY08536.1" /db_xref="TAIR:AT5G06440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SDL8" /translation="MMCPGHPGCVGLYVHKHVEAVSCVKPCLLSTFSWCWVLFLFLIF SLLVGAGGYWVHNMQIVYVFSNNFLILFPRWPQSSFPSFKVTSSTCLQKVQIGEQISL VRVKVAWPLSAREALVHYFFFEYFQDDLIVILVNTISDVSSIDKATHGFTNEGIPEAK DVVRIDLVGGFALQKVTNERSYFRTIANMDMKLDFVPPSLINFISRQLVGNGFRLYQK TVASVSNYDEDYCKALGEPLYTLIHEALYSSNASGEVLEGQERKSEAHLVPNEYLIEG IQDDTHDIKRKVHVNDHAGETPLGKAQDTKRKAFGEIEEEESEESTCLEEGVEAVNQP STYEFADTNGVNAKKRIYIRPEVEEALGTLEKAISIVRQYGFNAQSRSSSFSDEEPPT LEEGAVEDLAYAADGKVCLKVQVGVEAASIKVAERTLHDSRNSSDINNTRSAGSNSFS REVNHNKVAPATPQQNVSIPVVTNQVALNSIKANGFHENGVHDVKKSTNWRKHRFCCF GFHSG" gene 10338671..10342173 /locus_tag="TCM_023091" /note="dbxref CacaoGD:Thecc1EG023091" mRNA join(10338671..10339228,10339313..10339409, 10339519..10339608,10339986..10340051,10340154..10340222, 10340790..10340932,10341266..10341341,10341776..10341866, 10342149..10342173) /locus_tag="TCM_023091" /product="DNAJ heat shock N-terminal domain-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01022555001" /inference="similar to AA sequence:Phytozome:GSVIVT01022555001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11291t00001" CDS join(10338870..10339228,10339313..10339409, 10339519..10339608,10339986..10340051,10340154..10340222, 10340790..10340927) /locus_tag="TCM_023091" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="DNAJ heat shock N-terminal domain-containing protein, putative isoform 1" /protein_id="EOY08537.1" /db_xref="Phytozome:GSVIVT01022555001" /db_xref="TAIR:AT5G06410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SDL9" /translation="MYKTKKLWTPLSTVVRRALPTTCHLTPYSPNSQIRSSSSRLETS SRVSLSLHYGHDFLGNLKFSAKSFCSQSAAKVDATTKRCWNCDAVAAGMAPFLYCDSC RSIQPVDFSVDYFQIFGLEKKYEIEVDGLEGKYKDWQKKLHPDLVHSKSEKEREYAAE QSARVIDAYRTLSKPLARAIYILRLEGVLVDEEQTVSDPELLTEIMEIREAVEEAMDS QALNQIQSQMKEKLEGSSSSFANAYRSRNFDEAVTCIQKMTYYQRANEEILKKL" mRNA join(<10338978..10339228,10339313..10339409, 10339519..10339608,10339986..10340051,10340154..10340222, 10340790..10340932,10341266..10341297,10341786..10342004) /locus_tag="TCM_023091" /product="DNAJ heat shock N-terminal domain-containing protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01022555001" /inference="similar to AA sequence:Phytozome:GSVIVT01022555001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00306t00002; inference alignment:Newbler:10:TSA:cgbaL_g11291t00001" CDS join(<10338978..10339228,10339313..10339409, 10339519..10339608,10339986..10340051,10340154..10340222, 10340790..10340927) /locus_tag="TCM_023091" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="DNAJ heat shock N-terminal domain-containing protein, putative isoform 2" /protein_id="EOY08538.1" /db_xref="Phytozome:GSVIVT01022555001" /db_xref="TAIR:AT5G06410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L7K4" /translation="SSSRLETSSRVSLSLHYGHDFLGNLKFSAKSFCSQSAAKVDATT KRCWNCDAVAAGMAPFLYCDSCRSIQPVDFSVDYFQIFGLEKKYEIEVDGLEGKYKDW QKKLHPDLVHSKSEKEREYAAEQSARVIDAYRTLSKPLARAIYILRLEGVLVDEEQTV SDPELLTEIMEIREAVEEAMDSQALNQIQSQMKEKLEGSSSSFANAYRSRNFDEAVTC IQKMTYYQRANEEILKKL" gene complement(10342032..10345791) /locus_tag="TCM_023092" /note="dbxref CacaoGD:Thecc1EG023092" mRNA complement(10342032..10345791) /locus_tag="TCM_023092" /product="Pentatricopeptide repeat (PPR) superfamily protein, putative" /inference="alignment:exonerate-protein:2:frave:gene18256" /inference="similar to AA sequence:Phytozome:POPTR_0006s21510.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.18 coverage" CDS complement(10342068..10345220) /locus_tag="TCM_023092" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein, putative" /protein_id="EOY08539.1" /db_xref="Phytozome:POPTR_0006s21510.1" /db_xref="TAIR:AT5G06400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NDY4" /translation="MRNVIRFQPFRTESRTDLSRLYFARLEPLHLSTLPKPQKTKKPP QTNLKNQAETCSIPSLFHEITEVLGAVNLNSDDIPSGFSISNKSNCRELQFMEESLSR RSAVCQNSQEKSKLVEKEENVTVLDDTQMGNSVEFDVSPVVHKITKIVRAENALVSME NQLEKSGFSFEPEIVEKVLKRCFKVPHLAFRFFSWVKLREGFRHTTGTFNTMLYIAGE AKEYGLVERLLEEMKEKSCEKDIKTCTILISQYGKSKLIGKALEVFENMRRCGCEPDA AAYRMMIRALCNAEKCDIAFEFYKEMVEKEMSLDLNLYKMLLNCLAKSGNNAAVHLVA DNMMRVSQVPEQEVYGYVLKSFCISGRIREALELIRDLKEKDLSLDPQYFETLVKGLC RADRIADALEIVDIMKRRQLVSQKVYEIIINGYLRRKDLSKALDLFKSMQESGYLPTA SAYTELMQHLFRLNKYQKGCDLYNEMLQKGVEPDSVAIMAMVAGHVRQKHISEAWEVF KSMEDRSIRPTWTAYSIFIKELCKIARTDEIFRVLSKMQEAKIVIRDEIFHWVISCME RKGETDNVEKVKQMQRKCKLQSQKGEVFSNNALKEQEPLKVLEHNLSEPERTTDYHLV QPLSKAYNVHDLEEVCRILSSSNEWCIAEEALERCNIQFTPELVVEILRRSTLYGRSA LNFFSWVGKQVGYWHTTETYNMAIKISGCGKDFINMRRLFYEMKRRGCLTTPNTWAIM ILQYGRTGMTEIALRTFAEMKTERFNPTASTYKYLIISLCGKKGRKVDEAIKIFQEMI HAGHNPDKELLETYLGCLCEVGKLLEARSCTDSLSKVGFTVPLRYSLYIRALSRAGRL EEALEMLDNVGTEQATLDLYVYGSLVHGLLRKGRFEQALAKVDSMKQAGIYPTVHVYT SLIVHFFKERQMERALGIFAKMKKEGCQPTIVTYSAMIRGYMNMGKVVDAWNVFHHMR LKEPKPDFKTYSMFISCLCRIGRSEEAMQLLSEMPNSGILPSTVNFQTVFFGLNRQGR HDLAQIVLQRKSALKSERKL" gene 10346578..10348687 /locus_tag="TCM_023093" /note="dbxref CacaoGD:Thecc1EG023093" mRNA join(10346578..10346757,10348024..10348687) /locus_tag="TCM_023093" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06710.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s06710.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13753t1" CDS join(10346579..10346757,10348024..10348390) /locus_tag="TCM_023093" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08540.1" /db_xref="Phytozome:POPTR_0016s06710.1" /db_xref="TAIR:AT2G35900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIH8" /translation="MGWVWKDEPNDALESTARDGDRCSTRKVVRSQCKTEEVEPGKFV RKCEKTEEVLKECVGRPVEVLQSNKEYTEDDVTEQVLRGNFLSGSQHVEGSFDFPGLR SDMEEIERRFFGGFNRFFDAAEEVKNSFLDAFGDFYGSGSSGPPSIRKGIPIESHPQK EASPKPADSGHLDLSGLAKDV" mobile_element 10348827..10353000 /note="source:INTACT121_F29_scaffold_8-int 1 4174" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10353001..10353938 /note="source:CACAO_M_E34064_F244_scaffold_4 1 938" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10361956..10362729 /note="source:INTACT121_F29_scaffold_8-int 4164 4956" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10366502..10366783 /note="source:INTACT280_F60_scaffold_5-int 17749 18030" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10366781..10369610 /note="source:CACAO_M_S_E64023_F13_scaffold_5 13491 15884" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10369765..10370325 /note="source:CACAO_M_E5415_F72_scaffold_2 3520 4082" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10370324..10372651) /note="source:INTACT51F_F15_scaffold_1-int 8933 11259" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10372752..10373504 /note="source:CACAO_M_E56665_F15_scaffold_8 2212 2974" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10373505..10375494 /note="source:INTACT472_F79_scaffold_7-int 3528 5514" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10374460..10375620) /note="source:CACAO_M_E48164_F87_scaffold_6 1701 2885" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10375722..10377447 /note="source:CACAO_M_E43479_F273_scaffold_5 1246 2976" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10377448..10378911) /note="source:CACAO_M_S_E83372_F14_scaffold_6 3035 4481" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10379272..10380763) /note="source:CACAO_hAT_E1198_scaffold_3 4358 5829" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(10381141..10381449) /note="source:CACAO_hAT_E1198_scaffold_3 3720 4011" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(10381743..10381773) /note="source:INTACT189_F49_scaffold_5-int 13637 13671" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10381774..10382297 /note="source:CACAO_M_E50309_F82_scaffold_7 1 523" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10382673..10384387 /note="source:CACAO_M_E69485_F323_scaffold_9 903 2617" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10384488..10385331 /note="source:INTACT465_F78_scaffold_6-int 12329 13183" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10385851..10388794) /note="source:CACAO_Again_on_E5_scaffold_1 1 2934" /mobile_element_type="transposon:TIR/hAT" gene 10392248..10397467 /locus_tag="TCM_023099" /note="dbxref CacaoGD:Thecc1EG023099" mRNA join(10392248..10393368,10394750..10394893, 10395030..10395182,10395582..10395697,10395844..10396011, 10396168..10396392,10396583..10397467) /locus_tag="TCM_023099" /product="Calcium dependent protein kinase 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06700.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044380t1" /inference="similar to AA sequence:frave:gene18254" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc891t1" CDS join(10392477..10393368,10394750..10394893, 10395030..10395182,10395582..10395697,10395844..10396011, 10396168..10396392,10396583..10396708) /locus_tag="TCM_023099" /note="dbxref frave:gene18254; paralog of Thecc1EG044380t1" /codon_start=1 /product="Calcium dependent protein kinase 1" /protein_id="EOY08541.1" /db_xref="TAIR:AT5G04870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q38870" /translation="MGNSCITLRKDGLFQTISNSIWWSRPAEVGNEDKKQIGNEAHSE STEAEAVQNQPPEEMKIVKEETGREQQGKSQEETQRQQSKSAPQRLNSKPSQLAGFNK EETKVEPGKPRKPHNVKRQSCAGLQVDSVLQTKTGHLKEYYNLGRKLGHGQFGTTFLC VEKGSGKECACKSIAKRKLTTQDDVDDVRREIQIMHHMAGHPNVISIKGAYEDSVAVH VVMELCAGGELFDRIVKRGHYTERKAAELARTIVGVVEACHSMGVMHRDLKPENFLFV NEEEDSPLKAIDFGLSIFFKPGDILSDVVGSPYYVAPEVLRKRYGPEADVWSAGVIIY ILLSGVPPFWGETEQEIFDEVLHGDLDFTSDPWPSISDSAKDLVRKMLVRDAKKRITA YEVLRHPWVQVDGVAPDKPLDSIVLSRMKQFSAMNKLKKMALRVIAQRLSEEEIAGLK EIFKMIDTDNSGQITYEELKAGLKKFGANLAESEFHALMQAADVDNSGTIDYEEFIAA TLHLNKIEREDHLFAAFSYFDRDGSGYITQDELQKACQEFGIEDISLDEMIQEVDQDN DGRIDYNEFVAMMQKGNPEFGMKGPQGKGFSIGFREALPVC" gene 10401259..10405780 /locus_tag="TCM_023100" /note="dbxref CacaoGD:Thecc1EG023100" mRNA join(10401259..10401442,10401896..10402124, 10402246..10402632,10402724..10402776,10403063..10403134, 10403236..10403317,10403401..10403472,10403624..10403731, 10404552..10405375) /locus_tag="TCM_023100" /product="TPX2 family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06690.1" /inference="similar to AA sequence:ricco:29333.m001080" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3929t3; inference alignment:Newbler:10:TSA:cgbaB_g00725t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc427t12_C2" mRNA join(10401259..10401442,10401896..10402101, 10402246..10402632,10402724..10402776,10403063..10403134, 10403236..10403317,10403401..10403472,10403624..10403731, 10404552..10405375) /locus_tag="TCM_023100" /product="TPX2 family protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06690.1" /inference="similar to AA sequence:ricco:29333.m001080" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g3929t2; inference alignment:Newbler:10:TSA:cgbaB_g00725t00001" mRNA join(10401743..10402124,10402246..10402632, 10402724..10402776,10403048..10403134,10403236..10403317, 10403401..10403472,10403624..10403731,10404552..10405780) /locus_tag="TCM_023100" /product="TPX2 family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06690.1" /inference="similar to AA sequence:ricco:29333.m001080" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00725t00001" CDS join(10401897..10402124,10402246..10402632, 10402724..10402776,10403048..10403134,10403236..10403317, 10403401..10403472,10403624..10403731,10404552..10405010) /locus_tag="TCM_023100" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29333.m001080" /codon_start=1 /product="TPX2 family protein, putative isoform 1" /protein_id="EOY08542.1" /db_xref="TAIR:AT2G35880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIH6" /translation="MESENEVTVEEERIVIERTDVEESATEAKKEELNADTKGEGVAN LKEASKPGTKSEGMASKAAANVSKSKISKPLKEPGNLTGRNSKNNKVIKDKSNLRSAV PLSRDQRAVLSQSLSFPARRVHGDGLMKSIDGYPEKVDLKHGQEEGTKVQASSNGSLS SLSRLNHPNSRGSIKLDSKPANTNGGGVTARRTTLASLPSNRQALPAKSVPGNVAAKS PSSSDLCECRSADSKPVTAALLSKEDDDAHSTTSATSRSTRRSSGSGFTFRLEERAEK RKEFFSKLEEKIHAKEVERNNLQAKSKENQEAEIKQLRKSLAFKATPMPSFYKEPPPK VELKKIPTTRAKSPKLGRHKSSVSATNNPSEGDGSSVSPSLNQEQNFSTRRTQTNGNE DNVASKKAVKKSQPKLQSKEITKAEEKPGKSKPRTRRVENTVQDACVGKPEEHQNHPV NLPQLEDAVGVADGTNPAKNGGLISSLANPETMPRQVPVGG" CDS join(10401897..10402124,10402246..10402632, 10402724..10402776,10403063..10403134,10403236..10403317, 10403401..10403472,10403624..10403731,10404552..10405010) /locus_tag="TCM_023100" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29333.m001080" /codon_start=1 /product="TPX2 family protein, putative isoform 2" /protein_id="EOY08543.1" /db_xref="TAIR:AT2G35880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIH6" /translation="MESENEVTVEEERIVIERTDVEESATEAKKEELNADTKGEGVAN LKEASKPGTKSEGMASKAAANVSKSKISKPLKEPGNLTGRNSKNNKVIKDKSNLRSAV PLSRDQRAVLSQSLSFPARRVHGDGLMKSIDGYPEKVDLKHGQEEGTKVQASSNGSLS SLSRLNHPNSRGSIKLDSKPANTNGGGVTARRTTLASLPSNRQALPAKSVPGNVAAKS PSSSESADSKPVTAALLSKEDDDAHSTTSATSRSTRRSSGSGFTFRLEERAEKRKEFF SKLEEKIHAKEVERNNLQAKSKENQEAEIKQLRKSLAFKATPMPSFYKEPPPKVELKK IPTTRAKSPKLGRHKSSVSATNNPSEGDGSSVSPSLNQEQNFSTRRTQTNGNEDNVAS KKAVKKSQPKLQSKEITKAEEKPGKSKPRTRRVENTVQDACVGKPEEHQNHPVNLPQL EDAVGVADGTNPAKNGGLISSLANPETMPRQVPVGG" CDS join(10402090..10402101,10402246..10402632, 10402724..10402776,10403063..10403134,10403236..10403317, 10403401..10403472,10403624..10403731,10404552..10405010) /locus_tag="TCM_023100" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29333.m001080" /codon_start=1 /product="TPX2 family protein, putative isoform 3" /protein_id="EOY08544.1" /db_xref="TAIR:AT2G35880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIH6" /translation="MSPKEPGNLTGRNSKNNKVIKDKSNLRSAVPLSRDQRAVLSQSL SFPARRVHGDGLMKSIDGYPEKVDLKHGQEEGTKVQASSNGSLSSLSRLNHPNSRGSI KLDSKPANTNGGGVTARRTTLASLPSNRQALPAKSVPGNVAAKSPSSSESADSKPVTA ALLSKEDDDAHSTTSATSRSTRRSSGSGFTFRLEERAEKRKEFFSKLEEKIHAKEVER NNLQAKSKENQEAEIKQLRKSLAFKATPMPSFYKEPPPKVELKKIPTTRAKSPKLGRH KSSVSATNNPSEGDGSSVSPSLNQEQNFSTRRTQTNGNEDNVASKKAVKKSQPKLQSK EITKAEEKPGKSKPRTRRVENTVQDACVGKPEEHQNHPVNLPQLEDAVGVADGTNPAK NGGLISSLANPETMPRQVPVGG" gene complement(10406819..10418281) /locus_tag="TCM_023101" /note="dbxref CacaoGD:Thecc1EG023101" mRNA complement(join(10406819..10407860,10409151..10410833, 10418191..10418281)) /locus_tag="TCM_023101" /product="FASCICLIN-like arabinogalactan protein 17 precursor" /inference="alignment:exonerate-protein:2:frave:gene18252" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044386t2" /inference="similar to AA sequence:Phytozome:POPTR_0006s21460.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.49 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13768t1" CDS complement(join(10407787..10407860,10409151..10410468)) /locus_tag="TCM_023101" /note="paralog of Thecc1EG044386t2" /codon_start=1 /product="FASCICLIN-like arabinogalactan protein 17 precursor" /protein_id="EOY08545.1" /db_xref="Phytozome:POPTR_0006s21460.1" /db_xref="TAIR:AT5G06390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93W32" /translation="MDSSIYGVSSSKIFLFFYFFFFVSFAIAALPQNPSGKSFSSSAS GQINSNSVLVALLDSHYTELAELVEKALLLQTLEEAVGKHNITIFAPRNEALERQLDP EFKRFLLEPGNLKSLQTLLMFHIIPKRVGSHQWPDPKTGPVKHNTLCNDHLNLTSKST GKKTVDSAELIRPDDVIRPDGVIHGIQQLLIPRSVIEDFNKRRNLRSISAVLPEGAPE VDPRTHRLKKPAPVPVGAPPVLPIYEAMAPGPSLAPAPAPGPGGPHHHFDGESQVKDF IHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVITVLAPNDEAMAKLTTDQLSEP GAPEQIIYYHIIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVVAQEADGSVKFGHGEG SAYLFDPDIYTDGRISVQGIDGVLFPEEETQTVQKPAAVKVASKPRRGKLLEVGCWML GTLGQGLRFRSCQ" mobile_element 10415195..10418194 /note="source:CACAO_M_E10495_F87_scaffold_2 1 3012" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10418184..10418495) /note="source:INTACT95_F143_scaffold_9-int 459 757" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10418473..10418809) /note="source:CACAO_M_E12710_F15_scaffold_3 2506 2830" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10418810..10419263 /note="source:INTACT51F_F15_scaffold_1-int 1 454" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10424833..10425049 /note="source:INTACT646F_F95_scaffold_5-int 10985 11205" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10425150..10426749 /note="source:INTACT51F_F15_scaffold_1-int 5940 7539" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10427785..10428671 /note="source:INTACT51F_F15_scaffold_1-int 7540 8426" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10433968..10434409 /note="source:INTACT646F_F95_scaffold_5-int 11324 11765" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10438999..10439216 /note="source:CACAO_M_E84316_F15_scaffold_10 225 404" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10439171..10441016) /note="source:CACAO_M_E49857_F85_scaffold_7 4059 5907" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10441015..10442401 /note="source:CACAO_M_E84316_F15_scaffold_10 530 1918" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10442402..10445885) /note="source:CACAO_M_E56825_F323_scaffold_8 1 3438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10445886..10446684) /note="source:CACAO_M_S_E5046_F335_scaffold_1 4135 4963" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10446680..10447139) /note="source:CACAO_M_S_E64023_F13_scaffold_5 5812 6282" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10452024..10452054 /note="source:CACAO_M_S_E119191_F3_scaffold_9 3402 3432" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10452030..10452491 /note="source:CACAO_M_E49857_F85_scaffold_7 365 827" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10457210..10457729 /note="source:CACAO_M_E53388_F15_scaffold_8 5873 6375" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10457659..10457739) /note="source:CACAO_M_E12297_F14_scaffold_3 13997 14078" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10457732..10458140 /note="source:INTACT1581F_F99_scaffold_9-int 8390 8798" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10458486..10458719) /note="source:CACAO_M_E3876_F15_scaffold_1 1 234" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10460049..10461674) /note="source:INTACT454F_F360_scaffold_4-int 6925 8578" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10461775..10466794 /note="source:INTACT584_F15_scaffold_3-int 1272 6293" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10466782..10468253) /note="source:CACAO_M_E58894_F15_scaffold_9 2431 3898" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10479143..10479595 /note="source:CACAO_M_E23859_F15_scaffold_4 10331 10783" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10480083..10482274) /note="source:scaffold_4_CACTA_0494 8564 10756" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10482199..10482284) /note="source:CACAO_M_E53452_F33_scaffold_8 9003 9087" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10482262..10482437) /note="source:INTACT215_F33_scaffold_4-int 2798 2973" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10485383..10486452 /note="source:CACAO_M_E180656_F323_scaffold_28 2373 3444" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10486469..10487364 /note="source:CACAO_M_S_E84840_F51_scaffold_7 2171 3067" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10489385..10492317 /note="source:CACAO_M_E35311_F247_scaffold_5 1 2933" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10498025..10498488 /note="source:INTACT109_F145_scaffold_4-int 4324 4787" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10500697..10501143) /note="source:scaffold_5_CACTA_0610 10295 10741" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10501245..10504886 /note="source:INTACT109_F145_scaffold_4-int 1039 4680" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10516137..10516378) /note="source:scaffold_5_CACTA_0610 9335 9576" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10517214..10520179 /note="source:CACAO_M_S_E53144_F325_scaffold_5 1 2966" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10520590..10520629) /note="source:CACAO_M_E69460_F12_scaffold_9 2547 2586" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10521325..10524664) /note="source:scaffold_9_CACTA_0932 186 2515" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10524913..10525041) /note="source:INTACT409F_F47_scaffold_4-int 20889 21016" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(10527051..10533870) /locus_tag="TCM_023110" /note="dbxref CacaoGD:Thecc1EG023110" mRNA complement(join(10527051..10528072,10528217..10528280, 10529419..10529454,10529525..10529787,10529890..10529997, 10530144..10530523,10530640..10530748,10530851..10530913, 10531991..10532037,10532167..10532306,10533284..10533428, 10533520..10533870)) /locus_tag="TCM_023110" /product="RING-H2 group F2A isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s21450.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041186t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s06670.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc771t12" mRNA complement(join(10527817..10528280,10529419..10529787, 10529890..10529994,10530144..10530523,10530640..10530748, 10530851..10530913,10531991..10532037,10532167..10532300, 10533284..10533711)) /locus_tag="TCM_023110" /product="RING-H2 group F2A isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s21450.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041186t2" /inference="similar to AA sequence:Phytozome:POPTR_0016s06670.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4375t4; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc771t12; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc757t8" mRNA complement(join(10527817..10528280,10529419..10529787, 10529890..10529997,10530144..10530523,10530640..10530748, 10530851..10530913,10531991..10532037,10532167..10532300, 10533284..10533711)) /locus_tag="TCM_023110" /product="RING-H2 group F2A isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s21450.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041186t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s06670.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4375t2; alternateUTRof:Thecc1EG023110t2; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc771t12; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc757t8" mRNA complement(join(10527817..10528280,10529890..10529997, 10530144..10530523,10530640..10530748,10530851..10530913, 10531991..10532037,10532167..10532306,10533284..10533711)) /locus_tag="TCM_023110" /product="RING-H2 group F2A isoform 7" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s21450.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041186t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s06670.1" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4375t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc771t12; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc757t8" mRNA complement(join(10527817..10528280,10529419..10529787, 10529890..10529997,10530144..10530523,10530640..10530748, 10530851..10530913,10531991..10532037,10532167..10532306, 10533284..10533711)) /locus_tag="TCM_023110" /product="RING-H2 group F2A isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s21450.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041186t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s06670.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4375t3; alternateUTRof:Thecc1EG023110t2; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc771t12; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc757t8" mRNA complement(join(10527927..10528280,10529419..10529787, 10529890..10529997,10530144..10530523,10530640..10530748, 10530851..10530913,10531991..10532037,10532167..10532306, 10533284..10533428,10533520..10533540)) /locus_tag="TCM_023110" /product="RING-H2 group F2A isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s21450.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041186t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s06670.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03181t00002; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc771t12; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc757t8" mRNA complement(join(10527928..10528280,10529419..10529787, 10529890..10529997,10530144..10530523,10530640..10530748, 10530851..10530913,10531991..10532037,10532167..10532300, 10533284..10533467)) /locus_tag="TCM_023110" /product="RING-H2 group F2A isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s21450.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041186t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s06670.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05240t00001; alternateUTRof:Thecc1EG023110t2; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc771t12; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc757t8" CDS complement(join(10528015..10528072,10528217..10528280, 10529419..10529454,10529525..10529787,10529890..10529997, 10530144..10530523,10530640..10530748,10530851..10530913, 10531991..10532037,10532167..10532298)) /locus_tag="TCM_023110" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG041186t1" /codon_start=1 /product="RING-H2 group F2A isoform 1" /protein_id="EOY08546.1" /db_xref="Phytozome:POPTR_0016s06670.1" /db_xref="TAIR:AT5G22000.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZT42" /translation="MEEIQKPDSHMTSAAAFVEGGIQDACDDACSICLEEFSKSDPST VTNCKHDFHLQCILDWCQRSSQCPMCWQAISLKDSASQELLEVVERERSFRVTPSRNT TIFHHPTLGDFELQHLPVGANDPELEERIIQHLAAAAAMGRARHSGWRDGQRRSSAHS RPHFLVFSTHPGAQHSGSVSTPLTQIGGETEAAAITVASPATPLSSGGEELSQQMSPF PSGQNTPASGSTVSPLNRRGFSLNNRSTSSNSSLPNQERAGPSEFQSFSESLKSRFNA VSLRYKESISKSTRGWKERWFSRNSSMSDLGNEVRREVSAGIASVSRMMEHLETRENN SPNEASVSNHLAESSITEQDNQHNAGNHGDNPLTNCIYPQHFIFVGCQSCFSRNDMLR KRCFAFQASARYLYLTVWMADLAMAEC" CDS complement(join(10528253..10528280,10529890..10529997, 10530144..10530523,10530640..10530748,10530851..10530913, 10531991..10532037,10532167..10532298)) /locus_tag="TCM_023110" /note="encoded by transcript variant 7; alternatively spliced; paralog of Thecc1EG041186t1" /codon_start=1 /product="RING-H2 group F2A isoform 7" /protein_id="EOY08552.1" /db_xref="Phytozome:POPTR_0016s06670.1" /db_xref="TAIR:AT5G22000.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZT42" /translation="MEEIQKPDSHMTSAAAFVEGGIQDACDDACSICLEEFSKSDPST VTNCKHDFHLQCILDWCQRSSQCPMCWQAISLKDSASQELLEVVERERSFRVTPSRNT TIFHHPTLGDFELQHLPVGANDPELEERIIQHLAAAAAMGRARHSGWRDGQRRSSAHS RPHFLVFSTHPGAQHSGSVSTPLTQIGGETEAAAITVASPATPLSSGGEELSQQMSPF PSGQNTPASGSTVSPLNRRGFSLNNRSTSSNSSLPNQERAGPSEFQSFSESLKSRFNA VSLRLPILFLQK" CDS complement(join(10529475..10529787,10529890..10529994, 10530144..10530523,10530640..10530748,10530851..10530913, 10531991..10532037,10532167..10532298)) /locus_tag="TCM_023110" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG041186t2" /codon_start=1 /product="RING-H2 group F2A isoform 5" /protein_id="EOY08550.1" /db_xref="Phytozome:POPTR_0016s06670.1" /db_xref="TAIR:AT5G22000.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZT42" /translation="MEEIQKPDSHMTSAAAFVEGGIQDACDDACSICLEEFSKSDPST VTNCKHDFHLQCILDWCQRSSQCPMCWQAISLKDSASQELLEVVERERSFRVTPSRNT TIFHHPTLGDFELQHLPVGANDPELEERIIQHLAAAAAMGRARHSGWRDGQRRSSAHS RPHFLVFSTHPGAQHSGSVSTPLTQIGGETEAAAITVASPATPLSSGGEELSQQMSPF PSGQNTPASGSTVSPLNRRGFSLNNRTSSNSSLPNQERAGPSEFQSFSESLKSRFNAV SLRYKESISKSTRGWKERWFSRNSSMSDLGNEVRREVSAGIASVSRMMEHLETRENNS PNEASVSNHLAESSITEQDNQHNAGNHGDNPLSISPTPASHAASSLSN" CDS complement(join(10529475..10529787,10529890..10529997, 10530144..10530523,10530640..10530748,10530851..10530913, 10531991..10532037,10532167..10532298)) /locus_tag="TCM_023110" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG041186t1" /codon_start=1 /product="RING-H2 group F2A isoform 2" /protein_id="EOY08547.1" /db_xref="Phytozome:POPTR_0016s06670.1" /db_xref="TAIR:AT5G22000.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZT42" /translation="MEEIQKPDSHMTSAAAFVEGGIQDACDDACSICLEEFSKSDPST VTNCKHDFHLQCILDWCQRSSQCPMCWQAISLKDSASQELLEVVERERSFRVTPSRNT TIFHHPTLGDFELQHLPVGANDPELEERIIQHLAAAAAMGRARHSGWRDGQRRSSAHS RPHFLVFSTHPGAQHSGSVSTPLTQIGGETEAAAITVASPATPLSSGGEELSQQMSPF PSGQNTPASGSTVSPLNRRGFSLNNRSTSSNSSLPNQERAGPSEFQSFSESLKSRFNA VSLRYKESISKSTRGWKERWFSRNSSMSDLGNEVRREVSAGIASVSRMMEHLETRENN SPNEASVSNHLAESSITEQDNQHNAGNHGDNPLSISPTPASHAASSLSN" CDS complement(join(10529475..10529787,10529890..10529997, 10530144..10530523,10530640..10530748,10530851..10530913, 10531991..10532037,10532167..10532298)) /locus_tag="TCM_023110" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG041186t1" /codon_start=1 /product="RING-H2 group F2A isoform 2" /protein_id="EOY08548.1" /db_xref="Phytozome:POPTR_0016s06670.1" /db_xref="TAIR:AT5G22000.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZT42" /translation="MEEIQKPDSHMTSAAAFVEGGIQDACDDACSICLEEFSKSDPST VTNCKHDFHLQCILDWCQRSSQCPMCWQAISLKDSASQELLEVVERERSFRVTPSRNT TIFHHPTLGDFELQHLPVGANDPELEERIIQHLAAAAAMGRARHSGWRDGQRRSSAHS RPHFLVFSTHPGAQHSGSVSTPLTQIGGETEAAAITVASPATPLSSGGEELSQQMSPF PSGQNTPASGSTVSPLNRRGFSLNNRSTSSNSSLPNQERAGPSEFQSFSESLKSRFNA VSLRYKESISKSTRGWKERWFSRNSSMSDLGNEVRREVSAGIASVSRMMEHLETRENN SPNEASVSNHLAESSITEQDNQHNAGNHGDNPLSISPTPASHAASSLSN" CDS complement(join(10529475..10529787,10529890..10529997, 10530144..10530523,10530640..10530748,10530851..10530913, 10531991..10532037,10532167..10532298)) /locus_tag="TCM_023110" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG041186t1" /codon_start=1 /product="RING-H2 group F2A isoform 2" /protein_id="EOY08549.1" /db_xref="Phytozome:POPTR_0016s06670.1" /db_xref="TAIR:AT5G22000.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZT42" /translation="MEEIQKPDSHMTSAAAFVEGGIQDACDDACSICLEEFSKSDPST VTNCKHDFHLQCILDWCQRSSQCPMCWQAISLKDSASQELLEVVERERSFRVTPSRNT TIFHHPTLGDFELQHLPVGANDPELEERIIQHLAAAAAMGRARHSGWRDGQRRSSAHS RPHFLVFSTHPGAQHSGSVSTPLTQIGGETEAAAITVASPATPLSSGGEELSQQMSPF PSGQNTPASGSTVSPLNRRGFSLNNRSTSSNSSLPNQERAGPSEFQSFSESLKSRFNA VSLRYKESISKSTRGWKERWFSRNSSMSDLGNEVRREVSAGIASVSRMMEHLETRENN SPNEASVSNHLAESSITEQDNQHNAGNHGDNPLSISPTPASHAASSLSN" CDS complement(join(10529475..10529787,10529890..10529997, 10530144..10530523,10530640..10530748,10530851..10530913, 10531991..10532037,10532167..10532298)) /locus_tag="TCM_023110" /note="encoded by transcript variant 6; alternatively spliced; paralog of Thecc1EG041186t1" /codon_start=1 /product="RING-H2 group F2A isoform 2" /protein_id="EOY08551.1" /db_xref="Phytozome:POPTR_0016s06670.1" /db_xref="TAIR:AT5G22000.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZT42" /translation="MEEIQKPDSHMTSAAAFVEGGIQDACDDACSICLEEFSKSDPST VTNCKHDFHLQCILDWCQRSSQCPMCWQAISLKDSASQELLEVVERERSFRVTPSRNT TIFHHPTLGDFELQHLPVGANDPELEERIIQHLAAAAAMGRARHSGWRDGQRRSSAHS RPHFLVFSTHPGAQHSGSVSTPLTQIGGETEAAAITVASPATPLSSGGEELSQQMSPF PSGQNTPASGSTVSPLNRRGFSLNNRSTSSNSSLPNQERAGPSEFQSFSESLKSRFNA VSLRYKESISKSTRGWKERWFSRNSSMSDLGNEVRREVSAGIASVSRMMEHLETRENN SPNEASVSNHLAESSITEQDNQHNAGNHGDNPLSISPTPASHAASSLSN" mobile_element complement(10536074..10538157) /note="source:CACAO_on_SS_E42_scaffold_2 594 2644" /mobile_element_type="transposon:TIR/Mutator" mobile_element 10538153..10538227 /note="source:CACAO_M_E69460_F12_scaffold_9 22475 22551" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10538227..10538905) /note="source:CACAO_M_S_E4911_F76_scaffold_1 12824 13502" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10540717..10541326) /note="source:CACAO_M_S_E4911_F76_scaffold_1 2972 3581" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10541495..10542330) /note="source:INTACT135F_F90_scaffold_2-int 16239 17086" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10542332..10545605 /note="source:CACAO_M_E57337_F76_scaffold_9 2273 5565" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 10542435..10549046 /locus_tag="TCM_023111" /note="dbxref CacaoGD:Thecc1EG023111" mRNA join(10542435..10542445,10546383..10546691, 10548473..10549046) /locus_tag="TCM_023111" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS join(10546599..10546691,10548473..10548589) /locus_tag="TCM_023111" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08553.1" /translation="MVSKFMPWWLCCVIDQIKSHSANDLKAAMSKARGVTLPLYNKTF CFHVWNPKRGLNYQKRIGERAKKYP" gene complement(10549048..10563240) /locus_tag="TCM_023112" /note="dbxref CacaoGD:Thecc1EG023112" mRNA complement(join(10549048..10549552,10551494..10551547, 10555242..10555374,10555899..10555931,10558088..10558265, 10559045..10559174,10560354..10560596,10563186..10563240)) /locus_tag="TCM_023112" /product="Uncharacterized protein" /inference="similar to AA sequence:frave:gene20290" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS complement(join(10549261..10549552,10551494..10551547, 10555242..10555374,10555899..10555931,10558088..10558265, 10559045..10559174,10560354..10560556)) /locus_tag="TCM_023112" /note="dbxref frave:gene20290" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08554.1" /translation="MIRPFPTLDEAHNLVLREESQRSLHIQSQPLIEASAMATYGDNK KRNKNDLVCSHSEKKGHLKDKCFRSNNGLEFDLESFYSSKGVIHQNSCVGTPQQNGVV EKKHQTLLMAMQQELTALEENATWTIMPLFIGAHIVGCKWVYKLKLHANGTIEWYKAR LVAKGYSQKEALAVSVGYLDEDLITIAHRRDTEVDAKPYRVSICIRGNECLSRRRGGC HGLDESFRGGEKTDIKALRGFGWHSGLSLSRRSVFVRCRWFRGLNWEHHSWLRPRENC PLSLPVGIFVLNKRLAKRAFVGLLVLLQKHEGTGNWELGPGQGFPVKVFCPPPFNLHL SHLLAI" mobile_element 10550758..10551393 /note="source:CACAO_M_E56674_F14_scaffold_8 11944 12563" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10551427..10554267 /note="source:CACAO_M_S_E53154_F78_scaffold_5 1 2841" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10554268..10554822) /note="source:CACAO_M_E42809_F5_scaffold_5 1 551" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10555233..10557999 /note="source:CACAO_M_E35324_F87_scaffold_5 1 2767" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10561702..10562318 /note="source:scaffold_2_CACTA_0260 3898 4514" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10577228..10578151 /note="source:CACAO_M_S_E4984_F231_scaffold_1 1 927" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10578152..10581087 /note="source:CACAO_M_S_E53162_F83_scaffold_5 1 2936" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10581088..10582856 /note="source:CACAO_M_S_E4984_F231_scaffold_1 923 2720" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(10584144..10591560) /locus_tag="TCM_023114" /note="dbxref CacaoGD:Thecc1EG023114" mRNA complement(join(10584144..10584185,10590942..10591126, 10591375..10591560)) /locus_tag="TCM_023114" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035599t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" mobile_element complement(10585274..10585361) /note="source:INTACT19F_F94_scaffold_1-int 14251 14343" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10585538..10585731) /note="source:INTACT19F_F94_scaffold_1-int 14013 14206" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10588090..10588365 /note="source:scaffold_2_CACTA_0260 3897 4173" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10588365..10591030) /note="source:scaffold_6_CACTA_0702 8989 11654" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(10591003..10591126,10591375..10591517)) /locus_tag="TCM_023114" /note="paralog of Thecc1EG035599t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08555.1" /translation="MFVSPPRLLTRLMMITESMRLTPLLFPLLQTGIGLACNHRYVRS TADSELMGISRKACSGLGGSFSKVSNADNDRGGVVTGEESERLG" mobile_element 10593927..10593971 /note="source:CACAO_M_S_E6875_F7_scaffold_2 6512 6556" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10594089..10594377) /note="source:scaffold_6_CACTA_0702 8706 8994" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10594378..10596890) /note="source:CACAO_M_E33318_F259_scaffold_4 1 2541" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10596891..10597397) /note="source:scaffold_6_CACTA_0702 8212 8710" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10597397..10597494 /note="source:scaffold_2_CACTA_0260 4168 4267" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10599837..10600463) /note="source:CACAO_M_E59641_F12_scaffold_9 5358 6012" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10600980..10601235 /note="source:INTACT646_F284_scaffold_3-int 5651 5906" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10602452..10602654 /note="source:INTACT646_F284_scaffold_3-int 7125 7328" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10603345..10604813) /note="source:CACAO_M_E4753_F17_scaffold_2 11909 13406" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10604816..10605704 /note="source:INTACT409F_F47_scaffold_4-int 1 892" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10609154..10611632) /note="source:INTACT146F_F14_scaffold_2-int 3169 6891" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10612587..10613752 /note="source:CACAO_M_E35341_F14_scaffold_5 1 1166" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10617899..10618963) /note="source:CACAO_M_E36294_F51_scaffold_5 12796 13861" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10618962..10619253) /note="source:INTACT118_F5_scaffold_9-int 12103 12395" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10619355..10622028) /note="source:INTACT118_F5_scaffold_9-int 9412 12082" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 10620727..10626743 /locus_tag="TCM_023117" /note="dbxref CacaoGD:Thecc1EG023117" mRNA join(10620727..10620871,10622201..10622503, 10623533..10623584,10625615..10625772,10625893..10626743) /locus_tag="TCM_023117" /product="Gag protease polyprotein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046323t1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.13 coverage" CDS join(10622315..10622503,10623533..10623584, 10625615..10625772,10625893..10626504) /locus_tag="TCM_023117" /note="paralog of Thecc1EG046323t1" /codon_start=1 /product="Gag protease polyprotein, putative" /protein_id="EOY08556.1" /translation="MFRATPTAEQVESPPYPPPYPPLTGIPSMPPEVVQTLAAFFIAM AGQAQTGQVPPIVPPTTPTCTQKAHLKRYPTRLYDRGCVSFTGELDPTVAKNWINQVL KTLSDMRLEDDMKLMVATRLLEKRARTGWNSGNLTVEEYEARFNELMLYVPDLVKSKQ DQASYFEEGLRNEIRERMTVIGREPHKEVVQMALRAEKLANENRRMRAEIAKRRNLSG SSSQQPKRGKDLMASGSITSALITSSRPLVSQTQQRPLRFSRSEMTTSEKSFEGFDRC RHCEKYHVGLCRKLVRCFHCDQLGHYRSDCPQLGRAIVAVPSPSARTNIQRKDSTEVQ PR" mobile_element 10622562..10623985 /note="source:INTACT118_F5_scaffold_9-int 9415 10835" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10624086..10625609 /note="source:INTACT118_F5_scaffold_9-int 10872 12394" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(10626745..10662665) /locus_tag="TCM_023118" /note="dbxref CacaoGD:Thecc1EG023118" mRNA complement(join(10626745..10627140,10630611..10630962, 10643617..10645146,10662595..10662665)) /locus_tag="TCM_023118" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400037053" /inference="similar to AA sequence:Phytozome:Glyma03g36280.1" /note="quality class is medium-utrpoor, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc684t4" mobile_element complement(10626833..10627036) /note="source:CACAO_M_E24729_F87_scaffold_4 3056 3253" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10627115..10630109) /note="source:INTACT118_F5_scaffold_9-int 9410 12396" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10630105..10630388 /note="source:CACAO_M_E14074_F143_scaffold_3 1054 1339" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10632100..10632956) /note="source:INTACT146F_F14_scaffold_2-int 13368 14227" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10632635..10633828 /note="source:CACAO_M_E1841_F5_scaffold_1 4288 5468" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10634831..10639932) /note="source:INTACT153_F18_scaffold_9-int 244 5387" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10640575..10642070 /note="source:CACAO_M_S_E53182_F17_scaffold_5 1 1496" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 10641802..10643643 /locus_tag="TCM_023119" /note="dbxref CacaoGD:Thecc1EG023119" mRNA join(10641802..10641859,10642576..10643050, 10643195..10643643) /locus_tag="TCM_023119" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.44 coverage" mobile_element complement(10642081..10642328) /note="source:scaffold_5_CACTA_0586 11452 11702" /mobile_element_type="transposon:TIR/CACTA" CDS join(10642895..10643050,10643195..10643272) /locus_tag="TCM_023119" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08558.1" /translation="MQKMRLLLQSMKTEHCWLHVQKKAPGQFYNHFFFNSEVHIEIMP RTKGPNVVISSTKSFANSWKKSKTAAGTNPGRR" CDS complement(10644039..10644581) /locus_tag="TCM_023118" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08557.1" /db_xref="Phytozome:Glyma03g36280.1" /db_xref="TAIR:AT3G11690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9M8" /translation="MSRQIILRTPTSVRRRQPLLQSRSSSSSCSSSVDDGGSSTRRTS QKSAKFGEFCGETTAECAAICCCCPCGIANLLVLAIYKVPAGLCRRALRQKRRRKLLK KGLLQPRTHRGHCGCDDSELQVHPVVCLEDFFPDVEVSEEAEKAVVELEKEMWQRFYG TGFWRSPSQREGESPRIKQL" mobile_element 10653279..10670776 /note="source:scaffold_5_CACTA_0586 1 17498" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10678739..10680409) /note="source:INTACT336_F12_scaffold_2-int 1 1169" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10681110..10681909 /note="source:CACAO_M_E72867_F9_scaffold_10 21603 22378" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10683057..10685546 /note="source:CACAO_M_E24473_F369_scaffold_4 1 2459" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10685543..10685658) /note="source:CACAO_M_S_E88540_F369_scaffold_7 1 116" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10685660..10685817) /note="source:CACAO_Mariner_E229_scaffold_9 4307 4463" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 10686960..10687006 /note="source:CACAO_M_E70136_F322_scaffold_10 2033 2079" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10687015..10690093 /note="source:CACAO_M_S_E66915_F51_scaffold_6 1 3108" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10690803..10693715 /note="source:CACAO_M_E35355_F247_scaffold_5 1 2913" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10694919..10697671 /note="source:CACAO_M_E35356_F98_scaffold_5 1 2753" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10698981..10699159 /note="source:CACAO_M_E5899_F5_scaffold_2 22523 22700" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10702154..10702186 /note="source:INTACT212_F171_scaffold_10-int 4495 4526" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10702187..10705103) /note="source:CACAO_M_E69554_F279_scaffold_9 1 2908" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10716728..10716876 /note="source:scaffold_5_CACTA_0586 2017 2168" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10717554..10718039 /note="source:scaffold_5_CACTA_0586 2402 2923" /mobile_element_type="transposon:TIR/CACTA" gene complement(10718394..10719081) /locus_tag="TCM_023124" /note="dbxref CacaoGD:Thecc1EG023124" mRNA complement(join(10718394..10718814,10718917..10719081)) /locus_tag="TCM_023124" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:TAIR:AT3G52360.1" /inference="similar to AA sequence:Phytozome:GSVIVT01022551001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2040t3_C2" CDS complement(join(10718555..10718814,10718917..10719046)) /locus_tag="TCM_023124" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08559.1" /db_xref="Phytozome:GSVIVT01022551001" /translation="MEGSVGAGFMAVFAVSGSVVFIAREVHKRLLSDFMKKIESELGG SAKCQVKKRVRFADDVMEPSSNNKEYRKRNRSSLAKQAKVGDVDEYDHPHQLLEMDDI MPLNRQVLYKGLLEYKTLKTHDASNFL" mobile_element complement(10721945..10722068) /note="source:CACAO_M_S_E122136_F76_scaffold_10 18318 18423" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10723176..10725154) /note="source:CACAO_M_S_E84261_F4_scaffold_6 6443 8429" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10725155..10727729 /note="source:CACAO_M_S_E53198_F231_scaffold_5 1 2575" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10727730..10728284 /note="source:CACAO_M_S_E144426_F33_scaffold_10 20190 20744" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10728280..10734514) /note="source:CACAO_M_S_E5285_F300_scaffold_1 10551 16807" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10731391..10738243 /note="source:INTACT494_F82_scaffold_3-int 3217 10055" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10738155..10738324) /note="source:INTACT759_F323_scaffold_6-int 7170 7289" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10738173..10738231 /note="source:INTACT453_F4_scaffold_9-int 14043 14186" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10738324..10738764 /note="source:CACAO_M_S_E120308_F33_scaffold_10 10416 10855" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10740517..10744068) /note="source:INTACT453_F4_scaffold_9-int 15218 18802" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10747646..10758694 /note="source:CACAO_M_E35365_F15_scaffold_5 1 11024" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10758732..10758792 /note="source:CACAO_M_E5899_F5_scaffold_2 8903 8963" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10759165..10759585) /note="source:CACAO_M_S_E51867_F7_scaffold_4 4746 5163" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10759224..10759609 /note="source:CACAO_M_E5899_F5_scaffold_2 8957 9341" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10759630..10760078 /note="source:CACAO_M_S_E5046_F335_scaffold_1 17794 18135" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10760068..10760185) /note="source:CACAO_M_E4668_F85_scaffold_2 3230 3347" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10760104..10760810 /note="source:CACAO_M_E3248_F5_scaffold_1 6081 6825" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10762222..10762305 /note="source:CACAO_M_S_E4534_F4_scaffold_1 4697 4781" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10762295..10767108) /note="source:CACAO_M_S_E84261_F4_scaffold_6 278 5155" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10767109..10782975 /note="source:INTACT610_F272_scaffold_5-int 1 15867" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10782976..10783241) /note="source:CACAO_M_E84368_F4_scaffold_10 21310 21575" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10787361..10788731) /note="source:CACAO_on_E6_scaffold_1 1812 3180" /mobile_element_type="transposon:TIR/hAT" mobile_element 10788716..10790414 /note="source:CACAO_on_E77_scaffold_13 1450 3154" /mobile_element_type="transposon:TIR/hAT" mobile_element 10791114..10791188 /note="source:CACAO_Again_on_E60_scaffold_2 227 301" /mobile_element_type="transposon:TIR/hAT" mobile_element 10792562..10795442 /note="source:scaffold_2_CACTA_0239 5018 7856" /mobile_element_type="transposon:TIR/CACTA" gene complement(10794377..10802687) /locus_tag="TCM_023137" /note="dbxref CacaoGD:Thecc1EG023137" mRNA complement(join(10794377..10794394,10797479..10798171, 10798263..10798309,10798575..10798761,10800019..10800309, 10800874..10801068,10801263..10801364,10801496..10801795, 10801898..10801979,10802329..10802364,10802486..10802687)) /locus_tag="TCM_023137" /product="Sucrose-phosphatase 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06640.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044430t1" /inference="similar to AA sequence:Phytozome:GSVIVT01022530001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaL_g13019t00001" mRNA complement(join(10794377..10794394,10797479..10798171, 10798263..10798309,10798575..10798761,10800019..10800309, 10800874..10801068,10801263..10801364,10801496..10801795, 10801898..10802003,10802329..10802364,10802486..10802687)) /locus_tag="TCM_023137" /product="Sucrose-phosphatase 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06640.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044430t1" /inference="similar to AA sequence:Phytozome:GSVIVT01022530001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:PASA:2:TSA:puevd3b022399t1a2; alternateUTRof:Thecc1EG023137t1; inference alignment:Newbler:10:TSA:cgbaL_g13019t00001" mobile_element 10795452..10795527 /note="source:scaffold_2_CACTA_0239 7781 7856" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10795689..10795780 /note="source:scaffold_2_CACTA_0239 7781 7868" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10795777..10795847 /note="source:scaffold_2_CACTA_0239 7786 7856" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10795856..10795931 /note="source:scaffold_2_CACTA_0239 7781 7856" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10797139..10797237 /note="source:scaffold_10_CACTA_0127 10149 10244" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(10798076..10798171,10798263..10798309, 10798575..10798761,10800019..10800309,10800874..10801068, 10801263..10801364,10801496..10801795,10801898..10801957)) /locus_tag="TCM_023137" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG044430t1" /codon_start=1 /product="Sucrose-phosphatase 1 isoform 1" /protein_id="EOY08560.1" /db_xref="Phytozome:GSVIVT01022530001" /db_xref="TAIR:AT2G35840.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5IH14" /translation="MNRIAMGARLMIVSDLDHTMVDHHDAENMSLLRFNALWESNYRH DSLLVFSTGRSPTLYKQLRKEKPMLTPDITIMSVGTEITYGNSMVPDDGWVEVLNQKW DRNIVTDETSKFSELTLQAETEQRPHKVSFYVDRTKAQTVMKELSECLEKRGLDIKII YSGGMDLDILPQGAGKGQALAYLLKKFKAEGKPPSNTLVCGDSGNDAELFSIPEVYGV MVSNAQEELLQWHAENAKGNPNIIHAKERCAAGIVEAIGHFNLGPNASPRDVADFIEC KLENVNPGHEVVRFYLFYERWRRGEIDNCEAYIASLKASCDPTAVFVFPSGVERTLHE CIHRLRGCHGDQKGKQFRVWVDSVLSTPTGTSTWQVKFDKWELSGDERYSCVTTIILN AKGSSASDGYTWVNVQQKWLEGFEKKDDSTWFF" CDS complement(join(10798076..10798171,10798263..10798309, 10798575..10798761,10800019..10800309,10800874..10801068, 10801263..10801364,10801496..10801795,10801898..10801957)) /locus_tag="TCM_023137" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG044430t1" /codon_start=1 /product="Sucrose-phosphatase 1 isoform 1" /protein_id="EOY08561.1" /db_xref="Phytozome:GSVIVT01022530001" /db_xref="TAIR:AT2G35840.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5IH14" /translation="MNRIAMGARLMIVSDLDHTMVDHHDAENMSLLRFNALWESNYRH DSLLVFSTGRSPTLYKQLRKEKPMLTPDITIMSVGTEITYGNSMVPDDGWVEVLNQKW DRNIVTDETSKFSELTLQAETEQRPHKVSFYVDRTKAQTVMKELSECLEKRGLDIKII YSGGMDLDILPQGAGKGQALAYLLKKFKAEGKPPSNTLVCGDSGNDAELFSIPEVYGV MVSNAQEELLQWHAENAKGNPNIIHAKERCAAGIVEAIGHFNLGPNASPRDVADFIEC KLENVNPGHEVVRFYLFYERWRRGEIDNCEAYIASLKASCDPTAVFVFPSGVERTLHE CIHRLRGCHGDQKGKQFRVWVDSVLSTPTGTSTWQVKFDKWELSGDERYSCVTTIILN AKGSSASDGYTWVNVQQKWLEGFEKKDDSTWFF" mRNA complement(join(10799504..10800309,10800874..10801068, 10801263..10801364,10801496..10801795,10801898..10802000, 10802329..10802364,10802486..10802664)) /locus_tag="TCM_023137" /product="Sucrose-6F-phosphate phosphohydrolase family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06640.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044430t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s06640.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc933t3; inference alignment:Newbler:10:TSA:cgbaL_g13019t00001" mRNA complement(join(10799887..10800309,10800874..10801068, 10801263..10801364,10801496..10801795,10801898..10801979, 10802329..10802364,10802486..10802664)) /locus_tag="TCM_023137" /product="Sucrose-6F-phosphate phosphohydrolase family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06640.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044430t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s06640.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc855t6; alternateUTRof:Thecc1EG023137t3; inference alignment:Newbler:10:TSA:cgbaL_g13019t00001" CDS complement(join(10799989..10800309,10800874..10801068, 10801263..10801364,10801496..10801795,10801898..10801957)) /locus_tag="TCM_023137" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG044430t1" /codon_start=1 /product="Sucrose-6F-phosphate phosphohydrolase family protein isoform 3" /protein_id="EOY08562.1" /db_xref="Phytozome:POPTR_0016s06640.1" /db_xref="TAIR:AT2G35840.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5IH14" /translation="MNRIAMGARLMIVSDLDHTMVDHHDAENMSLLRFNALWESNYRH DSLLVFSTGRSPTLYKQLRKEKPMLTPDITIMSVGTEITYGNSMVPDDGWVEVLNQKW DRNIVTDETSKFSELTLQAETEQRPHKVSFYVDRTKAQTVMKELSECLEKRGLDIKII YSGGMDLDILPQGAGKGQALAYLLKKFKAEGKPPSNTLVCGDSGNDAELFSIPEVYGV MVSNAQEELLQWHAENAKGNPNIIHAKERCAAGIVEAIGHFNLGPNASPRDVADFIEC KLENVNPGHEVVRFYLFYERWRRGEIDNCEAYIASLKASCVCLPAFLYF" CDS complement(join(10799989..10800309,10800874..10801068, 10801263..10801364,10801496..10801795,10801898..10801957)) /locus_tag="TCM_023137" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG044430t1" /codon_start=1 /product="Sucrose-6F-phosphate phosphohydrolase family protein isoform 3" /protein_id="EOY08563.1" /db_xref="Phytozome:POPTR_0016s06640.1" /db_xref="TAIR:AT2G35840.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5IH14" /translation="MNRIAMGARLMIVSDLDHTMVDHHDAENMSLLRFNALWESNYRH DSLLVFSTGRSPTLYKQLRKEKPMLTPDITIMSVGTEITYGNSMVPDDGWVEVLNQKW DRNIVTDETSKFSELTLQAETEQRPHKVSFYVDRTKAQTVMKELSECLEKRGLDIKII YSGGMDLDILPQGAGKGQALAYLLKKFKAEGKPPSNTLVCGDSGNDAELFSIPEVYGV MVSNAQEELLQWHAENAKGNPNIIHAKERCAAGIVEAIGHFNLGPNASPRDVADFIEC KLENVNPGHEVVRFYLFYERWRRGEIDNCEAYIASLKASCVCLPAFLYF" mobile_element complement(10803572..10803737) /note="source:CACAO_Again_on_E60_scaffold_2 107 298" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(10805839..10806039) /note="source:CACAO_M_E49195_F17_scaffold_6 13217 13431" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10806015..10806116) /note="source:CACAO_M_E49195_F17_scaffold_6 12566 12672" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10810848..10810904 /note="source:INTACT1404F_F12_scaffold_9-int 7143 7197" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10812230..10813984 /note="source:CACAO_M_S_E32860_F3_scaffold_4 1 1751" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10814211..10814296 /note="source:CACAO_on_SS_E90_scaffold_6 3706 3791" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(10815838..10815896) /note="source:CACAO_M_S_E124346_F13_scaffold_10 1147 1206" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10816459..10817036) /note="source:CACAO_M_S_E101631_F270_scaffold_9 19035 19612" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10817016..10819649 /note="source:CACAO_M_S_E85177_F5_scaffold_7 17602 20247" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10820895..10820957 /note="source:CACAO_M_E12463_F12_scaffold_3 4677 4739" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10822642..10822820) /note="source:scaffold_4_CACTA_0494 3866 4051" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10822744..10826716) /note="source:CACAO_M_S_E101631_F270_scaffold_9 15572 19620" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10827604..10828887 /note="source:CACAO_M_E23706_F323_scaffold_4 1 1283" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10828988..10829669 /note="source:CACAO_M_E52472_F323_scaffold_7 1323 2004" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10829951..10831477) /note="source:CACAO_M_E4027_F323_scaffold_2 5797 7385" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10831578..10834954) /note="source:INTACT759_F323_scaffold_6-int 3353 6749" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10835644..10836473 /note="source:CACAO_M_E49195_F17_scaffold_6 6714 7542" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10838692..10839160) /note="source:CACAO_M_E23040_F82_scaffold_4 1 469" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10839890..10840110 /note="source:INTACT261_F189_scaffold_2-int 180 380" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10843968..10845807) /note="source:INTACT222_F33_scaffold_7-int 3863 5782" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10847325..10850247 /note="source:CACAO_M_S_E53231_F33_scaffold_5 1 2923" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10850248..10850578) /note="source:INTACT222_F33_scaffold_7-int 3735 4080" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10850880..10853757 /note="source:CACAO_M_E35392_F247_scaffold_5 1 2878" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10853965..10855577) /note="source:CACAO_M_E58324_F9_scaffold_9 1310 3151" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10856231..10857611 /note="source:CACAO_M_E49857_F85_scaffold_7 14919 16301" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10862345..10863616) /note="source:CACAO_M_E58324_F9_scaffold_9 26926 28227" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10863604..10863959 /note="source:INTACT1432F_F101_scaffold_9-int 2866 3222" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 10866859..10869614 /note="source:CACAO_M_E35397_F73_scaffold_5 1 5510" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10869945..10870956) /note="source:scaffold_5_CACTA_0607 4886 5902" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10870957..10872454 /note="source:CACAO_M_E42911_F15_scaffold_5 1 1498" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10872555..10874113) /note="source:CACAO_M_E2978_F15_scaffold_1 1 1559" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10878987..10879972 /note="source:scaffold_5_CACTA_0607 6 923" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10879982..10880513 /note="source:CACAO_M_E49110_F15_scaffold_6 1 531" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10881219..10882482 /note="source:CACAO_M_E49110_F15_scaffold_6 1237 2501" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10882583..10883516) /note="source:CACAO_M_E86338_F15_scaffold_15 7831 8784" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10889110..10889318 /note="source:scaffold_5_CACTA_0611 2346 2554" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10889116..10889368) /note="source:CACAO_M_S_E100312_F82_scaffold_9 6276 6485" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10889469..10889653) /note="source:INTACT551_F248_scaffold_7-int 13045 13229" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10889670..10889939 /note="source:INTACT488_F227_scaffold_9-int 7434 7704" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10889940..10889981 /note="source:INTACT19F_F94_scaffold_1-int 4429 4717" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10889941..10890089) /note="source:CACAO_M_S_E119600_F33_scaffold_9 2212 2357" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10889957..10890593 /note="source:INTACT488_F227_scaffold_9-int 7434 8071" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10894516..10894741) /note="source:CACAO_M_E41756_F85_scaffold_5 16853 17078" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10894734..10898110) /note="source:INTACT550_F73_scaffold_4-int 2473 5813" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10897767..10898625 /note="source:scaffold_4_CACTA_0503 3217 4063" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10898730..10900833) /note="source:CACAO_M_E49452_F244_scaffold_7 1 2117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10900834..10901150) /note="source:scaffold_9_CACTA_0934 13572 13888" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10901141..10901930) /note="source:scaffold_9_CACTA_0934 9885 10684" /mobile_element_type="transposon:TIR/CACTA" gene 10901662..10909703 /locus_tag="TCM_023143" /note="dbxref CacaoGD:Thecc1EG023143" mRNA join(10901662..10901968,10902666..10903629, 10904459..10904665,10904763..10904862,10905569..10905651, 10905757..10905813,10905888..10906040,10906163..10906241, 10906333..10906481,10906617..10906751,10906941..10907054, 10907452..10907562,10907668..10907776,10908210..10908767) /locus_tag="TCM_023143" /product="Carotenoid isomerase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400049062" /inference="similar to AA sequence:Phytozome:POPTR_0016s06630.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4016t1" mRNA join(10902728..10903629,10904459..10904665, 10904763..10904862,10905569..10905651,10905757..10905813, 10905888..10906040,10906163..10906241,10906333..10906481, 10906617..10906751,10906941..10907054,10907452..10907562, 10907668..10907776,10908210..10909299,10909427..10909540, 10909626..10909703) /locus_tag="TCM_023143" /product="Carotenoid isomerase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400049062" /inference="similar to AA sequence:Phytozome:POPTR_0016s06630.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc501t16; alternateUTRof:Thecc1EG023143t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4016t1" CDS join(10903195..10903629,10904459..10904665, 10904763..10904862,10905569..10905651,10905757..10905813, 10905888..10906040,10906163..10906241,10906333..10906481, 10906617..10906751,10906941..10907054,10907452..10907562, 10907668..10907776,10908210..10908283) /locus_tag="TCM_023143" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Carotenoid isomerase isoform 1" /protein_id="EOY08564.1" /db_xref="Phytozome:POPTR_0016s06630.1" /db_xref="TAIR:AT1G06820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M9Y8" /translation="MNLGCYQTILLNKFVPRNVETKFLSCNPSKSAHSNGKKAGSVKL KYFQVIQRKKGFTLRSKSMLSVDSVVEIDRKEGIGRESKYDAIVIGSGIGGLVAATQL AVKGAKVLVVEKYVIPGGSSGYYQRDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGR EMEVIPDPTTVHFHLPNNLSVRVHKEYSEFIEELTSRFPHEKEGILKFYGECWKIFNA LNSLQLKSLEEPIYLFGQFFQKPLECLTLAYYLPQNAGDIARKYVKDPQLLSFIDAEC FIVSTVNALRTPMINAGMVLCDRHFGGINYPVGGVGGIAQSLAEGLIDQGSEILYRAN VTNIILDQGKAVGVRLSDGREFFARTIISNATRWDTFGKLLKGENLPEEEENFQKVYV KAPSFLSIHMGVKADVLPSDTDCHHFVLEDNWTRLEEPYGSIFLSIPTVLDSSLAPKG RHILHIFTTSSIEDWEGLPPKEYEAKKEQIAEEIIGRLEKKIFPGLKSSIVFKEVGTP KTHRRFLARDMGTYGPMPREIPKGLLGMPFNTTGISGLYCVGDSCFPGQGVIAVAFSG VMCAHRVAADIGLEKKSLILDTVLLRLLGWLRTLA" CDS join(10903195..10903629,10904459..10904665, 10904763..10904862,10905569..10905651,10905757..10905813, 10905888..10906040,10906163..10906241,10906333..10906481, 10906617..10906751,10906941..10907054,10907452..10907562, 10907668..10907776,10908210..10908283) /locus_tag="TCM_023143" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Carotenoid isomerase isoform 1" /protein_id="EOY08565.1" /db_xref="Phytozome:POPTR_0016s06630.1" /db_xref="TAIR:AT1G06820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M9Y8" /translation="MNLGCYQTILLNKFVPRNVETKFLSCNPSKSAHSNGKKAGSVKL KYFQVIQRKKGFTLRSKSMLSVDSVVEIDRKEGIGRESKYDAIVIGSGIGGLVAATQL AVKGAKVLVVEKYVIPGGSSGYYQRDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGR EMEVIPDPTTVHFHLPNNLSVRVHKEYSEFIEELTSRFPHEKEGILKFYGECWKIFNA LNSLQLKSLEEPIYLFGQFFQKPLECLTLAYYLPQNAGDIARKYVKDPQLLSFIDAEC FIVSTVNALRTPMINAGMVLCDRHFGGINYPVGGVGGIAQSLAEGLIDQGSEILYRAN VTNIILDQGKAVGVRLSDGREFFARTIISNATRWDTFGKLLKGENLPEEEENFQKVYV KAPSFLSIHMGVKADVLPSDTDCHHFVLEDNWTRLEEPYGSIFLSIPTVLDSSLAPKG RHILHIFTTSSIEDWEGLPPKEYEAKKEQIAEEIIGRLEKKIFPGLKSSIVFKEVGTP KTHRRFLARDMGTYGPMPREIPKGLLGMPFNTTGISGLYCVGDSCFPGQGVIAVAFSG VMCAHRVAADIGLEKKSLILDTVLLRLLGWLRTLA" gene complement(10908174..10916509) /locus_tag="TCM_023144" /note="dbxref CacaoGD:Thecc1EG023144" mRNA complement(join(10908174..10909298,10909425..10909532, 10909681..10909902,10910078..10910365,10910600..10910908, 10911064..10911247,10911353..10911508,10911988..10912223, 10912889..10912959,10915104..10915528)) /locus_tag="TCM_023144" /product="White-brown-complex ABC transporter family isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06620.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035481t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s06620.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4019t2; inference alignment:Newbler:10:TSA:cgbaL_g00282t00003; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc501t13_C2" mRNA complement(join(10908514..10909297,10909425..10909532, 10909618..10909902,10910078..10910365,10910600..10910908, 10911064..10911247,10911353..10911508,10911988..10912216, 10912604..10912763,10912889..10912959,10915104..10915502, 10916008..10916040,10916137..10916509)) /locus_tag="TCM_023144" /product="White-brown-complex ABC transporter family isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06620.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035481t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s06620.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00282t00003" mRNA complement(join(10908589..10909297,10909425..10909532, 10909618..10909902,10910078..10910365,10910600..10910908, 10911064..10911247,10911353..10911508,10911988..10912223, 10912889..10912959,10915104..10915502,10916008..10916130)) /locus_tag="TCM_023144" /product="White-brown-complex ABC transporter family isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06620.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035481t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s06620.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00282t00003; inference alignment:Newbler:10:TSA:cgbaL_g00282t00003; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc501t13_C2" CDS complement(join(10909076..10909297,10909425..10909532, 10909618..10909902,10910078..10910365,10910600..10910908, 10911064..10911247,10911353..10911508,10911988..10912216, 10912604..10912763,10912889..10912959,10915104..10915502, 10916008..10916040,10916137..10916167)) /locus_tag="TCM_023144" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG035481t1" /codon_start=1 /product="White-brown-complex ABC transporter family isoform 1" /protein_id="EOY08566.1" /db_xref="Phytozome:POPTR_0016s06620.1" /db_xref="TAIR:AT5G06530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIG9" /translation="MHLISASGAEAVGSSPFDSQKAVVNSHMEKPTNSTTLARTKSDQ LVETLAAAFKSPTQSDQAPGTSDSGGTLSRKSSRRLMMAASPGRSSGGSKNTHIRKSR SAQMKLDLEELSSGAALSRASSASLGLSFSFTGFTVPPDEIADSKPFSDDDIPEDIEA GTHKPKFQTEPTLPIYLKARMGNCLKINAIHRTWLAWSGSVLYRVSSYMTFMYKTLPS FQQMKKIAESGLTDVTYKVIIKGMTTSEERDILSGISGAVNPGEVLALMGPSGSGKTT LLNLLGGRLNQSSVGGSITYNDQPYSKFLKSRIGFVTQDDVLFPHLTVKETLTYAARL RLPKTLTKQQKEKRAIDVIYELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP SLLFLDEPTSGLDSTTALRTVQTLQDIAEAGKTVITTIHQPSSRLFHKFDKLILLGKG SLLYFGKASEAIVYFSSIGCSPLIAMNPAEFLLDLANGNINDISVPSELEDKVQMENS EAETRNGKPPPAVVHEYLVEAYESRVAENEKKKLMTPLPLDEELKLKVSSSKRQWGAS WWQQYCILFCRGIKERRHDYFSWLRITQVLSTAIILGLLWWQSDSKSPKGRQDQAGLL FFIAVFWGFFPVFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLDLILPVL FLLVVYFMAGLRVSASPFFLSMLTVFLCIVAAQGLGLAIGATLMDLKRATTLASVTVM TFMLAGGYFVKKVPVFISWIRHISFNYHTYKLLLKVQYQDIMPPVNGITTDSGLKEVG ALVAMIFGYRLLAYLSLRRMKLHSGA" CDS complement(join(10909076..10909297,10909425..10909532, 10909618..10909902,10910078..10910365,10910600..10910908, 10911064..10911247,10911353..10911508,10911988..10912223, 10912889..10912959,10915104..10915485)) /locus_tag="TCM_023144" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG035481t1" /codon_start=1 /product="White-brown-complex ABC transporter family isoform 2" /protein_id="EOY08567.1" /db_xref="Phytozome:POPTR_0016s06620.1" /db_xref="TAIR:AT5G06530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIG9" /translation="MEKPTNSTTLARTKSDQLVETLAAAFKSPTQSDQAPGTSDSGGT LSRKSSRRLMMAASPGRSSGGSKNTHIRKSRSAQMKLDLEELSSGAALSRASSASLGL SFSFTGFTVPPDEIADSKPFSDDDIPEDIEAGTHKPKFQTEPTLPIYLKFTDVTYKVI IKGMTTSEERDILSGISGAVNPGEVLALMGPSGSGKTTLLNLLGGRLNQSSVGGSITY NDQPYSKFLKSRIGFVTQDDVLFPHLTVKETLTYAARLRLPKTLTKQQKEKRAIDVIY ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRT VQTLQDIAEAGKTVITTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAIVYFSSIGC SPLIAMNPAEFLLDLANGNINDISVPSELEDKVQMENSEAETRNGKPPPAVVHEYLVE AYESRVAENEKKKLMTPLPLDEELKLKVSSSKRQWGASWWQQYCILFCRGIKERRHDY FSWLRITQVLSTAIILGLLWWQSDSKSPKGRQDQAGLLFFIAVFWGFFPVFTAIFTFP QERAMLSKERAADMYRLSAYFLARTTSDLPLDLILPVLFLLVVYFMAGLRVSASPFFL SMLTVFLCIVAAQGLGLAIGATLMDLKRATTLASVTVMTFMLAGGYFVKKVPVFISWI RHISFNYHTYKLLLKVQYQDIMPPVNGITTDSGLKEVGALVAMIFGYRLLAYLSLRRM KLHSGA" CDS complement(join(10909239..10909298,10909425..10909532, 10909681..10909902,10910078..10910365,10910600..10910908, 10911064..10911247,10911353..10911508,10911988..10912223, 10912889..10912959,10915104..10915485)) /locus_tag="TCM_023144" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG035481t1" /codon_start=1 /product="White-brown-complex ABC transporter family isoform 3" /protein_id="EOY08568.1" /db_xref="Phytozome:POPTR_0016s06620.1" /db_xref="TAIR:AT5G06530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIG9" /translation="MEKPTNSTTLARTKSDQLVETLAAAFKSPTQSDQAPGTSDSGGT LSRKSSRRLMMAASPGRSSGGSKNTHIRKSRSAQMKLDLEELSSGAALSRASSASLGL SFSFTGFTVPPDEIADSKPFSDDDIPEDIEAGTHKPKFQTEPTLPIYLKFTDVTYKVI IKGMTTSEERDILSGISGAVNPGEVLALMGPSGSGKTTLLNLLGGRLNQSSVGGSITY NDQPYSKFLKSRIGFVTQDDVLFPHLTVKETLTYAARLRLPKTLTKQQKEKRAIDVIY ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRT VQTLQDIAEAGKTVITTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAIVYFSSIGC SPLIAMNPAEFLLDLANGNINDISVPSELEDKVQMENSEAETRNGKPPPAVVHEYLVE AYESRVAENEKKKLMTPLPLDEELKLKVSSSKRQWGASWWQQYCILFCRGIKERRHDY FSWLRITQVLSTAIILGLLWWQSDSKSPKGRQDQAGLLFFIAVFWGFFPVFTAIFTFP QERAMLSKERAADMYRLSAYFLARTTSDLPLDLILPVLFLLVVYFMAGLRGLGLAIGA TLMDLKRATTLASVTVMTFMLAGGYFVKESSSVHILDPPYFFQLSYL" mobile_element complement(10917612..10920120) /note="source:INTACT337_F59_scaffold_7-int 2128 4675" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10922261..10922315) /note="source:scaffold_3_CACTA_0382 1862 1916" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10924776..10924841 /note="source:scaffold_3_CACTA_0382 1862 1931" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10924893..10924952) /note="source:scaffold_4_CACTA_0503 6215 6271" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10926053..10927168 /note="source:INTACT112_F37_scaffold_2-int 5405 6524" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10928570..10930295 /note="source:scaffold_3_CACTA_0382 10215 11899" /mobile_element_type="transposon:TIR/CACTA" gene 10930704..10939606 /locus_tag="TCM_023145" /note="dbxref CacaoGD:Thecc1EG023145" mRNA join(10930704..10930783,10932211..10932983, 10939386..10939606) /locus_tag="TCM_023145" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is paralog medium, intron is none, protein is utrpoor_complete" mobile_element 10930989..10931658 /note="source:INTACT874F_F37_scaffold_5-int 3688 4376" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 10932090..10932141 /note="source:CACAO_M_S_E122136_F76_scaffold_10 13642 13694" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS 10932549..10932809 /locus_tag="TCM_023145" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08569.1" /translation="MGGEQITHNAEASSGEQIIDSSKLPMSTSPRVILTDGIKALHAG ITSKISATVPTYHHPYKHTHSHKGTEIHSTANQINVRNSSLG" mobile_element complement(10934241..10934592) /note="source:INTACT337_F59_scaffold_7-int 1 361" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(10941909..10941970) /note="source:scaffold_3_CACTA_0382 1861 1923" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10941931..10942003 /note="source:scaffold_3_CACTA_0382 1861 1918" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10941940..10942040) /note="source:scaffold_3_CACTA_0382 1861 1918" /mobile_element_type="transposon:TIR/CACTA" mobile_element 10941998..10942056 /note="source:scaffold_3_CACTA_0382 1862 1921" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(10947308..10948959) /note="source:CACAO_M_E1036_F33_scaffold_1 1169 2820" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10948959..10950704) /note="source:CACAO_M_E34487_F323_scaffold_5 1437 3181" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10950805..10951519) /note="source:CACAO_M_E12225_F323_scaffold_3 980 1676" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10951863..10952095 /note="source:CACAO_M_E69460_F12_scaffold_9 10114 10346" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10952089..10953323) /note="source:CACAO_M_E22348_F13_scaffold_3 6851 8079" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10954983..10955570) /note="source:CACAO_M_E12297_F14_scaffold_3 7181 7770" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10956905..10957320) /note="source:CACAO_M_E84908_F12_scaffold_10 6138 6553" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10957317..10958628 /note="source:CACAO_M_S_E97826_F328_scaffold_8 24802 26112" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10958835..10962172 /note="source:CACAO_M_S_E97826_F328_scaffold_8 1 4514" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10962053..10962231 /note="source:INTACT405F_F91_scaffold_4-int 7484 7654" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(10962319..10963252) /locus_tag="TCM_023146" /note="dbxref CacaoGD:Thecc1EG023146" mRNA complement(10962319..10963252) /locus_tag="TCM_023146" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS complement(10962498..10962698) /locus_tag="TCM_023146" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08570.1" /translation="MQKLGSYSVCFQCYNVVLVPASYRDRSLGATALCFQRYPSPSML YFELSLNHHKKSFKLLYIITIN" mobile_element 10963710..10963766 /note="source:CACAO_M_S_E145445_F22_scaffold_10 10689 10745" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10967617..10967658) /note="source:CACAO_M_E59641_F12_scaffold_9 5996 6033" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10967659..10968404 /note="source:CACAO_M_E3465_F15_scaffold_1 1 747" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10969589..10970462) /note="source:CACAO_M_E5390_F15_scaffold_2 8074 8949" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10972892..10975144) /note="source:INTACT139F_F15_scaffold_2-int 3307 5559" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10977687..10977841 /note="source:CACAO_M_E3465_F15_scaffold_1 2416 2570" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10977688..10977862) /note="source:CACAO_M_S_E52921_F60_scaffold_5 6015 6185" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10982241..10982332 /note="source:CACAO_M_E52936_F14_scaffold_8 5354 5458" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10982814..10984550 /note="source:INTACT118_F5_scaffold_9-int 1 1770" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10984546..10990238) /note="source:INTACT1587F_F5_scaffold_9-int 1334 7020" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 10990239..10991491 /note="source:CACAO_M_E58877_F5_scaffold_9 1 1126" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(10992257..10992354) /note="source:CACAO_M_E12463_F12_scaffold_3 4647 4698" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 10994582..11009245 /locus_tag="TCM_023150" /note="dbxref CacaoGD:Thecc1EG023150" mRNA join(10994582..10994715,10994809..10994957, 10995711..10996178,11009057..11009245) /locus_tag="TCM_023150" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29333.m001089" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS join(10994686..10994715,10994809..10994957, 10995711..10996107) /locus_tag="TCM_023150" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08571.1" /translation="MIRDPDHKVKLLKSNSCSTLDIAQRKSKKPWKINAMFRVGEEDY VDEEKHSEGQLHLLTRNTTRRRDQLQGPRPAPLKVCNSSSKMKKSSHPDRSKINPVVI YLRSPKIIHVRPEEFMSLVQSLTGKDSTSIQSYPSSPSASSCDLAADESMSKRSHNLF DAEIMKPFNEVDFGDQFLGMSPTWLRFLARV" mobile_element complement(10997156..10997198) /note="source:CACAO_M_E12463_F12_scaffold_3 4649 4691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11000429..11001602 /note="source:CACAO_M_S_E89272_F5_scaffold_8 6733 7884" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11001603..11002521 /note="source:INTACT584_F15_scaffold_3-int 1 917" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11004790..11005102 /note="source:CACAO_M_S_E89272_F5_scaffold_8 15234 15551" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 11009631..11021584 /locus_tag="TCM_023151" /note="dbxref CacaoGD:Thecc1EG023151" mRNA join(11009631..11009846,11010007..11010155, 11010613..11010671,11010773..11010902,11011022..11011110, 11011209..11011362,11011443..11011633,11011980..11012194, 11012347..11012445,11012947..11013068,11013946..11014047, 11014651..11014760,11014923..11015010,11015298..11015497, 11015823..11016284,11016439..11016569,11021446..11021584) /locus_tag="TCM_023151" /product="Downstream neighbor of son, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01015854001" /inference="similar to AA sequence:Phytozome:POPTR_0016s06570.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4127t2" mRNA join(11009696..11009846,11010007..11010155, 11010613..11010671,11010773..11010923,11011022..11011110, 11011209..11011362,11011443..11011633,11011980..11012194, 11012347..11012445,11012947..11013068,11013946..11014047, 11014651..11014760,11014923..11015010,11015298..11015497, 11015821..11016284,11016439..11016532) /locus_tag="TCM_023151" /product="Downstream neighbor of son, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01015854001" /inference="similar to AA sequence:Phytozome:POPTR_0016s06570.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4127t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4127t2" CDS join(11010045..11010155,11010613..11010671, 11010773..11010902,11011022..11011110,11011209..11011362, 11011443..11011633,11011980..11012194,11012347..11012445, 11012947..11013068,11013946..11014047,11014651..11014760, 11014923..11015010,11015298..11015497,11015823..11016039) /locus_tag="TCM_023151" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Downstream neighbor of son, putative isoform 1" /protein_id="EOY08572.1" /db_xref="Phytozome:POPTR_0016s06570.1" /db_xref="TAIR:AT3G54750.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIG7" /translation="MAKVAAHGALASTSLQIGGDALKLGSTVKRKTPSELRGEQLKRT NVEELVNKSLAISEMDNGLKKQDLPRNPRYIDTRMDEVYPAKKSRFKLLSGKENAKEN SSIEQPSSLKKISALSTLAAKRRQQLSCPETSFASVDVPKDDVTRAPRTLEKCSQGTF LSVTELSSGGPKLSGLATLDMDKALKGLAACEAIPSAPPESLEKCDDLSPNGSFCSEF HVTGQKIPLDFTLKTYMRLVSSSSVNWLNRSMMCGTYNGMPQVTSQSGCSEDQNITKA SQARLASQALNSRALHSWIYPQSTLAPSLMSILASSAADGAEMDFLRKRQLAWEDSFR SLYYMFRQNVCSIFYVCTSHFVVMFTAADGSGRSRRSCHAYISQSTRGLRSSFKEHDV SFSMPLCRSQVEQVTTEDLVELSEIEKHNLGQTRRMNSLSDVDNTPQSLLAFTGNDNV HGLFEILLNYRSFLTFLNAVDVPVLYSPVPFQNAALSAPEIRCMEIKRADHGAALPKG FTLRDGDFRPISSTGLCYSVEIKDSHIPPWIISNICDLMASEGRSFEASFTTEHTSVG LNIALATACEKADSEATVAEDSQETAYAFGIPKVVVSPYLLAGLLKGLNYCNGSYAVS LSPV" CDS join(11010045..11010155,11010613..11010671, 11010773..11010923,11011022..11011110,11011209..11011362, 11011443..11011633,11011980..11012194,11012347..11012445, 11012947..11013068,11013946..11014047,11014651..11014760, 11014923..11015010,11015298..11015497,11015821..11015854) /locus_tag="TCM_023151" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Downstream neighbor of son, putative isoform 2" /protein_id="EOY08573.1" /db_xref="Phytozome:POPTR_0016s06570.1" /db_xref="TAIR:AT3G54750.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIG7" /translation="MAKVAAHGALASTSLQIGGDALKLGSTVKRKTPSELRGEQLKRT NVEELVNKSLAISEMDNGLKKQDLPRNPRYIDTRMDEVYPAKKSRFKLLSGKENAKVI TFPENENSSIEQPSSLKKISALSTLAAKRRQQLSCPETSFASVDVPKDDVTRAPRTLE KCSQGTFLSVTELSSGGPKLSGLATLDMDKALKGLAACEAIPSAPPESLEKCDDLSPN GSFCSEFHVTGQKIPLDFTLKTYMRLVSSSSVNWLNRSMMCGTYNGMPQVTSQSGCSE DQNITKASQARLASQALNSRALHSWIYPQSTLAPSLMSILASSAADGAEMDFLRKRQL AWEDSFRSLYYMFRQNVCSIFYVCTSHFVVMFTAADGSGRSRRSCHAYISQSTRGLRS SFKEHDVSFSMPLCRSQVEQVTTEDLVELSEIEKHNLGQTRRMNSLSDVDNTPQSLLA FTGNDNVHGLFEILLNYRSFLTFLNAVDVPVLYSPVPFQNAALSAPEIRCMEIKRADH GAALPKGFTLRDGDFRPISSTGLCYSVEIKDSHIPPWIISNICDLMASEGRSFEARAL QQSIPQLA" mobile_element complement(11022244..11022317) /note="source:CACAO_M_S_E31635_F14_scaffold_3 3163 3240" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11022978..11023007) /note="source:INTACT615_F273_scaffold_2-int 2966 3003" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11023008..11025605 /note="source:CACAO_M_E35422_F53_scaffold_5 1 2598" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11028940..11029709) /note="source:CACAO_M_E52837_F85_scaffold_8 2525 3297" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11032925..11033279 /note="source:CACAO_M_E84925_F82_scaffold_10 2954 3308" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11033326..11033400 /note="source:INTACT1432F_F101_scaffold_9-int 9827 9898" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(11034743..11036034) /note="source:scaffold_5_CACTA_0584 3573 4883" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11036669..11036812) /note="source:scaffold_5_CACTA_0584 3029 3170" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11036864..11036912 /note="source:scaffold_5_CACTA_0584 1919 1967" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11037727..11037809 /note="source:INTACT453_F4_scaffold_9-int 17714 17796" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11037811..11039514 /note="source:CACAO_M_E71542_F85_scaffold_10 1 1681" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11037984..11041159) /note="source:CACAO_M_S_E16357_F328_scaffold_2 1 3178" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11041161..11041503 /note="source:INTACT453_F4_scaffold_9-int 848 1186" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11042174..11043340 /note="source:CACAO_M_S_E53270_F14_scaffold_5 1 1167" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11043899..11044194 /note="source:INTACT642F_F365_scaffold_5-int 1 291" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11044195..11044902 /note="source:CACAO_M_E22966_F73_scaffold_4 1 711" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11044903..11047698 /note="source:CACAO_M_E35429_F244_scaffold_5 1 2796" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11047699..11048679 /note="source:INTACT599_F268_scaffold_9-int 8948 9937" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11049633..11049710 /note="source:CACAO_on_E680_scaffold_9 10222 10299" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 11049709..11050294 /note="source:INTACT642F_F365_scaffold_5-int 287 868" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11050553..11050765) /note="source:CACAO_Mutator_E1149_scaffold_5 5897 6108" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(11052446..11053535) /note="source:CACAO_M_E10295_F82_scaffold_2 1320 2409" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11053809..11054110) /note="source:CACAO_M_E58198_F82_scaffold_9 1 269" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11056412..11056478 /note="source:scaffold_5_CACTA_0586 16151 16218" /mobile_element_type="transposon:TIR/CACTA" gene complement(11058018..11075927) /locus_tag="TCM_023152" /note="dbxref CacaoGD:Thecc1EG023152" mRNA complement(join(11058018..11058371,11058673..11058783, 11058867..11058970,11059645..11059744,11061087..11061184, 11061600..11061652,11061834..11061893,11071965..11072036, 11072441..11072512,11072587..11072679,11072908..11072975, 11073319..11074157,11075558..11075927)) /locus_tag="TCM_023152" /product="2-phosphoglycolate phosphatase 1" /inference="alignment:exonerate- protein:2:ricco:29929.m004527" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030458t2" /inference="similar to AA sequence:ricco:29929.m004527" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08176t00001" CDS complement(join(11058677..11058783,11058867..11058970, 11059645..11059744,11061087..11061184,11061600..11061652, 11061834..11061893,11071965..11072036,11072441..11072512, 11072587..11072679,11072908..11072975,11073319..11073775)) /locus_tag="TCM_023152" /note="dbxref ricco:29929.m004527; paralog of Thecc1EG030458t2" /codon_start=1 /product="2-phosphoglycolate phosphatase 1" /protein_id="EOY08574.1" /db_xref="TAIR:AT5G36700.4" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LTH1" /translation="MAHNHKMDDKTECHHSNKQKHNGHKLPPRHKTRMKFYMYINKNR KLNQKNKRGAKMLTKAAVSISVSASITTAASSKSLICPSHRFLCLRRLSSLRSFSALR IAWRSSNCSYNNKSARTMERFTFTTRASAQPLENADELVDSVETFIFDCDGVIWKGDK LIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLNVTEEEIFASSFAAAA YLKSINFPKDKKVYVIGEDGILKELELAGFQYLGGPDDGGKKIELKPGFLMEHDKDVG AVVVGFDRYFNYYKVQYGTLCVRENPGCLLIATNRDAVTHLTDAQEWAGGGSMVGAIC GSTQREPLVVGKPSTFMMDYLANKFGILKSQICMVGDRLDTDILFGQNGGCKTLLVLS GVTSLSMLQSPNNSIQPDFYTNKISDFLSLKAATV" mobile_element 11062842..11062941 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3182 3278" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11062852..11062959) /note="source:CACAO_M_S_E31635_F14_scaffold_3 3182 3287" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11074784..11075145 /note="source:INTACT624_F277_scaffold_2-int 8957 9319" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11075146..11078117 /note="source:CACAO_M_S_E53277_F15_scaffold_5 1 2972" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11078118..11078869 /note="source:INTACT624_F277_scaffold_2-int 9315 10067" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11078560..11078915) /note="source:CACAO_M_S_E4591_F5_scaffold_1 5471 5825" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11078877..11079301 /note="source:CACAO_M_E22398_F15_scaffold_3 7761 8185" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11079531..11080492) /note="source:CACAO_M_E3465_F15_scaffold_1 8916 9877" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11081209..11081618 /note="source:CACAO_M_S_E15347_F33_scaffold_2 8102 8510" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11081609..11082056) /note="source:CACAO_M_S_E50960_F369_scaffold_4 11920 12367" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11085448..11085816 /note="source:CACAO_M_S_E15347_F33_scaffold_2 8144 8511" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11087924..11088559 /note="source:INTACT293_F14_scaffold_5-int 1 637" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11088544..11092731 /note="source:INTACT293_F14_scaffold_5-int 861 5015" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11092732..11102135 /note="source:INTACT543_F86_scaffold_5-int 1 9404" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11102136..11102849) /note="source:INTACT215F_F14_scaffold_3-int 4523 5235" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11102850..11105691 /note="source:CACAO_M_E35438_F15_scaffold_5 1 2842" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11105692..11110245) /note="source:CACAO_M_S_E119160_F14_scaffold_9 3 4588" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(11112308..11125367) /locus_tag="TCM_023155" /note="dbxref CacaoGD:Thecc1EG023155" mRNA complement(join(11112308..11112527,11116485..11116606, 11117137..11117190,11117310..11117405,11117789..11117862, 11121444..11121839,11122134..11123025,11123416..11123995, 11124542..11124625,11125275..11125367)) /locus_tag="TCM_023155" /product="Gag protease polyprotein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400069104.12" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038736t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.15 coverage" mobile_element 11113107..11113908 /note="source:INTACT85_F9_scaffold_4-int 725 1446" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11115564..11116489) /note="source:CACAO_M_S_E68170_F83_scaffold_6 1970 2913" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11116488..11119142) /note="source:CACAO_M_E35811_F12_scaffold_5 14952 17644" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(11116490..11116606,11117137..11117190, 11117310..11117405,11117789..11117862,11121444..11121839, 11122134..11123025,11123416..11123487)) /locus_tag="TCM_023155" /note="paralog of Thecc1EG038736t1" /codon_start=1 /product="Gag protease polyprotein" /protein_id="EOY08575.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C9U3" /translation="MCFVLVYYVLASFKIFEKNDQNTPITMPPRRGRPPLTRSVGRGR SRSQCHQPNTVEEESAASTIRAAPAAEQVDSPPHLPSPQPPTGIPAMPTEAAQALAAF FAAMAGQAQSGQVPPVVPPATPLVPPLVHDVSISKNLKEARQLGCVSFTGELDATVAK DWINQVSETLSDMGLDDDMKLMVATRLLEKRARTWWNSVKSRSATPQTWSDFLKEFDG QYFTYFHQKENKREFLSLKQGNLIVEEYETRFNELILYVPNLVKSEQDQASYFEEGLR NEIRERMIVTGREPHKEVVQMALQAKKLATENRRIQTEFAKRKNLAASSPPACIDMQR RDSSRLPLRQRVAIRSGVESNTPSHPPSRPQTRTATRVFVVTKDEARVRLGAVTSTMS LFDKDAYVLIDSGSDRSYVNTTFASIADRNLSPLEGEIIVHTPLGEQLIRNTCYRDCG IRIGGEPLDNGKGLYSRTENVSISTPNTWWGFPWIAYERGTVTQLYNYLRGEMLDEVS LEPWRSQWDTLTKVPARMILGDAEADTKPCGVSIGIRDNECLSGRHGGCHGPDGSSES " mobile_element 11119143..11123829 /note="source:INTACT670_F33_scaffold_3-int 3972 8659" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11123930..11126016 /note="source:INTACT670_F33_scaffold_3-int 788 2953" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11126017..11133359) /note="source:INTACT767_F326_scaffold_6-int 1 7353" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11133360..11135793 /note="source:CACAO_M_E14113_F106_scaffold_3 11390 13826" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11133882..11137053) /note="source:CACAO_M_E4900_F368_scaffold_2 5612 8808" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11137051..11139792 /note="source:CACAO_M_S_E6875_F7_scaffold_2 18241 20218" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11139773..11145453 /note="source:CACAO_M_E14113_F106_scaffold_3 15127 20784" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11147158..11149774) /note="source:CACAO_M_S_E85177_F5_scaffold_7 17612 20251" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 11151368..11158035 /locus_tag="TCM_023158" /note="dbxref CacaoGD:Thecc1EG023158" mRNA join(11151368..11151834,11153507..11153938, 11158016..11158035) /locus_tag="TCM_023158" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29929.m004525" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021553t1" /inference="similar to AA sequence:ricco:29929.m004525" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13758t1" CDS join(11151443..11151834,11153507..11153762) /locus_tag="TCM_023158" /note="dbxref ricco:29929.m004525; paralog of Thecc1EG021553t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08576.1" /db_xref="TAIR:AT3G53860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MY02" /translation="MGESITIDGMDQDSALSKSEFLSRQEVLRRRSRRVKQLARLYKA HYWNLMEELKRKHKEYYWLYGKSPFKEDEKKSSEENDGNKLGLRSQLKCQISDCKEKA MALTRFCHKHILNDSKQMLYRGCNFPIKSGQTCKKPVLRSINPPHCPVHAQAAEKYLS RALKRAGLNFSSPNKLAPKLHIVVAEYVRQIQTKRRAAQQKAVPKIKIEEKMSES" mobile_element 11160887..11163538 /note="source:CACAO_M_E3129_F369_scaffold_1 1 2687" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11163538..11164947) /note="source:CACAO_M_S_E84261_F4_scaffold_6 9318 10727" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11164946..11167926) /note="source:INTACT409F_F47_scaffold_4-int 3112 6074" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11168135..11174996) /note="source:CACAO_M_S_E64440_F7_scaffold_5 4203 10863" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11174997..11177755 /note="source:CACAO_M_E35454_F15_scaffold_5 1 2759" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11177756..11177843) /note="source:INTACT17_F7_scaffold_3-int 7199 7241" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11177810..11178702) /note="source:CACAO_M_S_E84261_F4_scaffold_6 8428 9325" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11178697..11179074) /note="source:CACAO_M_S_E84261_F4_scaffold_6 5091 5472" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11179159..11180496) /note="source:CACAO_M_E11098_F15_scaffold_2 14818 16143" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11180720..11181874) /note="source:CACAO_M_S_E84261_F4_scaffold_6 3930 5091" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11181875..11184827 /note="source:CACAO_M_E35457_F33_scaffold_5 1 2953" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11186884..11187250 /note="source:CACAO_M_E49857_F85_scaffold_7 20685 21045" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11188551..11191174) /note="source:CACAO_M_E14312_F12_scaffold_3 14831 17450" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11191275..11193965 /note="source:INTACT454F_F360_scaffold_4-int 7003 9695" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11197592..11197832) /note="source:CACAO_M_E49857_F85_scaffold_7 20294 20534" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11197933..11199868) /note="source:CACAO_M_E49857_F85_scaffold_7 18276 20242" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11201254..11201911) /note="source:CACAO_M_E49857_F85_scaffold_7 23021 23680" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11203826..11203868) /note="source:CACAO_M_E49857_F85_scaffold_7 9112 9155" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11203851..11205186) /note="source:CACAO_M_E59093_F12_scaffold_9 7258 8571" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11205187..11205773) /note="source:CACAO_M_S_E5046_F335_scaffold_1 4141 4729" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11206174..11206315) /note="source:CACAO_M_E11662_F12_scaffold_2 6610 6752" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11206309..11207553) /note="source:CACAO_M_E43348_F5_scaffold_5 14645 15902" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11207538..11207948 /note="source:CACAO_M_S_E15173_F4_scaffold_2 988 1398" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11208215..11208546 /note="source:CACAO_M_S_E4591_F5_scaffold_1 18190 18519" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11208824..11208883 /note="source:scaffold_3_CACTA_0382 1858 1918" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11208830..11208890) /note="source:scaffold_3_CACTA_0382 1861 1920" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11209163..11209230 /note="source:scaffold_3_CACTA_0382 1861 1929" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11209193..11209678) /note="source:INTACT506_F233_scaffold_3-int 1121 1598" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11209672..11209732 /note="source:CACAO_M_E43348_F5_scaffold_5 5256 5316" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11211365..11211834 /note="source:CACAO_M_S_E15173_F4_scaffold_2 1394 1864" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11213210..11213271 /note="source:CACAO_M_E5800_F12_scaffold_2 8996 9058" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11213212..11213264) /note="source:CACAO_M_S_E85473_F233_scaffold_7 10015 10067" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11213265..11216097 /note="source:CACAO_M_S_E53321_F233_scaffold_5 1 2833" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11216098..11217126) /note="source:CACAO_M_S_E84376_F22_scaffold_6 17800 18767" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11217130..11217255) /note="source:INTACT424_F211_scaffold_12-int 1078 1203" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11217293..11220603 /note="source:CACAO_M_S_E19828_F19_scaffold_3 2405 8966" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11220604..11224968 /note="source:CACAO_M_E11569_F12_scaffold_2 1 4382" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11224969..11227956) /note="source:CACAO_M_S_E124012_F7_scaffold_10 1 2989" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11227957..11228033 /note="source:CACAO_M_E11569_F12_scaffold_2 4378 4454" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11228034..11234820) /note="source:INTACT518_F239_scaffold_2-int 2773 9700" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11234821..11237954 /note="source:CACAO_M_S_E53327_F7_scaffold_5 1 3134" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11237957..11239485) /note="source:INTACT789_F335_scaffold_1-int 1422 4206" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11238262..11240564 /note="source:CACAO_M_E43348_F5_scaffold_5 18073 20389" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11240596..11243242) /note="source:INTACT518_F239_scaffold_2-int 1 2660" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11243243..11243481 /note="source:CACAO_M_S_E5046_F335_scaffold_1 20625 20864" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11243482..11243929) /note="source:CACAO_M_S_E14847_F12_scaffold_2 5253 5700" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11243928..11244542 /note="source:scaffold_3_CACTA_0382 11268 11877" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11244574..11244637 /note="source:CACAO_M_E5899_F5_scaffold_2 22625 22689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11245626..11245856) /note="source:INTACT1784F_F24_scaffold_10-int 127 358" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11247740..11258520 /note="source:CACAO_M_S_E53332_F15_scaffold_5 1 10781" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11259058..11259148 /note="source:INTACT189_F49_scaffold_5-int 2776 2868" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11268846..11269217 /note="source:INTACT65_F13_scaffold_1-int 15857 16222" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11269218..11269334 /note="source:CACAO_M_E5899_F5_scaffold_2 10181 10298" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11269524..11269743) /note="source:CACAO_M_E5899_F5_scaffold_2 20523 20686" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11270000..11270957 /note="source:CACAO_M_E43348_F5_scaffold_5 19720 20657" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(11271059..11294483) /locus_tag="TCM_023171" /note="dbxref CacaoGD:Thecc1EG023171" mRNA complement(join(11271059..11271088,11275203..11275376, 11278243..11278649,11279103..11279348,11294449..11294483)) /locus_tag="TCM_023171" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete" mobile_element 11271080..11272791 /note="source:scaffold_3_CACTA_0382 10253 11875" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11273212..11273278) /note="source:CACAO_M_E5892_F98_scaffold_2 9846 9918" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11273222..11273297 /note="source:CACAO_M_E5899_F5_scaffold_2 20727 20804" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11275910..11276198) /note="source:CACAO_M_S_E4911_F76_scaffold_1 2682 2970" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11277692..11277782) /note="source:INTACT189_F49_scaffold_5-int 17812 17902" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(11278285..11278649,11279103..11279295)) /locus_tag="TCM_023171" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08577.1" /translation="MDRKYYERLVTTFYLNATTIFKDNPTHDEEEEYAHEDMFVTSVM GKDIHINIDMISHILYVFNLGEATNEENSDNRDGEPLVALTIMGDTSFFQSLEPRLMA HICTSTKLIISSIEELRGCVNPLERDVETLAQLRDIDAFLPITLVNPPTMSSTQANPS TNPNTLVYPFDPLTSPMDPSLDLSP" mobile_element complement(11284682..11285026) /note="source:CACAO_M_S_E5285_F300_scaffold_1 19238 19591" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11285370..11288361 /note="source:CACAO_M_S_E53340_F7_scaffold_5 1 2992" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11288599..11290086 /note="source:CACAO_M_E58324_F9_scaffold_9 7666 8608" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11290073..11290797 /note="source:CACAO_M_E58324_F9_scaffold_9 9491 10221" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11291182..11293874 /note="source:CACAO_M_S_E52921_F60_scaffold_5 1070 3761" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11293870..11293904 /note="source:CACAO_M_E43348_F5_scaffold_5 9486 9520" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11293905..11296690 /note="source:CACAO_M_E10551_F245_scaffold_2 1 2788" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11297023..11297408) /note="source:CACAO_M_E5899_F5_scaffold_2 785 1179" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11297409..11300735 /note="source:CACAO_M_E35494_F85_scaffold_5 1 3327" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11300736..11301533) /note="source:CACAO_M_E1841_F5_scaffold_1 27195 28000" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11301506..11301957 /note="source:CACAO_M_S_E7105_F60_scaffold_2 3782 4233" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11301958..11304460 /note="source:CACAO_M_E24592_F195_scaffold_4 1459 3874" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11304459..11307986 /note="source:CACAO_M_E49885_F60_scaffold_7 6943 10513" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11307985..11309088) /note="source:CACAO_M_E53587_F207_scaffold_8 10855 11969" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11309189..11311510 /note="source:CACAO_M_E57360_F323_scaffold_9 1115 3437" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11311511..11311901 /note="source:CACAO_M_E43672_F60_scaffold_5 18727 19104" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11312441..11313637) /note="source:CACAO_M_E35511_F5_scaffold_5 8741 9918" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11318216..11318507) /note="source:CACAO_M_E24592_F195_scaffold_4 3585 3874" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11318498..11318793 /note="source:INTACT126_F14_scaffold_3-int 4768 5063" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11318533..11319877) /note="source:CACAO_M_S_E884_F44_scaffold_1 8014 9362" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11319861..11320735) /note="source:INTACT126_F14_scaffold_3-int 4028 4903" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11320736..11331214 /note="source:INTACT32_F15_scaffold_5-int 1 10479" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11331215..11332092) /note="source:CACAO_M_S_E7818_F60_scaffold_2 15344 16222" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11332935..11334620 /note="source:INTACT224_F176_scaffold_8-int 17369 19038" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11335446..11336401) /note="source:scaffold_8_CACTA_0859 16521 17468" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11337098..11359820 /note="source:CACAO_M_E35511_F5_scaffold_5 1 22723" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11359831..11362244) /note="source:scaffold_3_CACTA_0384 2632 5030" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11366034..11366303 /note="source:CACAO_M_E3326_F17_scaffold_1 13345 13611" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11366296..11367451 /note="source:CACAO_M_S_E119160_F14_scaffold_9 10803 11997" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11367270..11367536) /note="source:CACAO_M_E68730_F230_scaffold_9 1028 1285" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11367537..11370357 /note="source:CACAO_M_E3264_F322_scaffold_1 1 2811" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11370358..11370402) /note="source:CACAO_M_E5899_F5_scaffold_2 20563 20591" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11371174..11371686) /note="source:CACAO_M_E59624_F42_scaffold_9 2660 3176" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11371232..11374180 /note="source:CACAO_M_S_E34046_F60_scaffold_4 3508 6459" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11374538..11374713) /note="source:CACAO_M_S_E89272_F5_scaffold_8 15111 15289" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11374713..11374761) /note="source:CACAO_M_S_E89272_F5_scaffold_8 10933 10981" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11374854..11377549 /note="source:CACAO_M_S_E53386_F231_scaffold_5 1 2687" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11377595..11378889) /note="source:INTACT649F_F368_scaffold_5-int 679 2008" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11378887..11379913) /note="source:INTACT146F_F14_scaffold_2-int 3194 4242" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11380453..11380773 /note="source:INTACT649F_F368_scaffold_5-int 1 327" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11380765..11380812) /note="source:CACAO_M_E5800_F12_scaffold_2 1100 1147" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11380772..11381968 /note="source:CACAO_M_E35511_F5_scaffold_5 21527 22723" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11382077..11383988) /note="source:CACAO_M_E14113_F106_scaffold_3 18525 20422" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11383986..11384110 /note="source:INTACT649F_F368_scaffold_5-int 3379 3503" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11384111..11386363) /note="source:scaffold_3_CACTA_0382 9641 11899" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11386352..11386632) /note="source:scaffold_3_CACTA_0382 6350 6628" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11386634..11387169) /note="source:CACAO_M_E14113_F106_scaffold_3 16669 17204" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11390303..11390789) /note="source:CACAO_M_E35511_F5_scaffold_5 2481 2976" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11391631..11392055 /note="source:CACAO_M_E35511_F5_scaffold_5 3062 3486" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11392056..11394623 /note="source:CACAO_M_S_E53400_F266_scaffold_5 1 2555" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11394624..11395976 /note="source:CACAO_M_S_E4591_F5_scaffold_1 19124 20443" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11395977..11396204) /note="source:CACAO_M_E35511_F5_scaffold_5 2258 2485" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11396275..11396341) /note="source:CACAO_M_E35511_F5_scaffold_5 8824 8892" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11400563..11401474 /note="source:CACAO_M_E24592_F195_scaffold_4 1459 2361" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11401475..11401843 /note="source:scaffold_3_CACTA_0384 7862 9100" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11403167..11403234 /note="source:CACAO_M_E48452_F5_scaffold_6 8691 8758" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11405037..11407381 /note="source:CACAO_M_E43348_F5_scaffold_5 18073 20417" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11407400..11410447) /note="source:CACAO_M_E43169_F141_scaffold_5 1 3089" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11412481..11415423 /note="source:CACAO_M_E35546_F52_scaffold_5 1 2949" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11415431..11416285) /note="source:scaffold_8_CACTA_0859 16933 17782" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11416287..11419259 /note="source:CACAO_M_E35551_F245_scaffold_5 1 2973" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11419260..11419692) /note="source:scaffold_8_CACTA_0859 16513 16936" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11419692..11419776) /note="source:INTACT686_F300_scaffold_3-int 3579 3663" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11419775..11420792 /note="source:CACAO_M_E84368_F4_scaffold_10 4507 5522" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11420793..11423445 /note="source:CACAO_M_E35553_F345_scaffold_5 1 2653" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11423446..11424068 /note="source:CACAO_M_E84368_F4_scaffold_10 5518 6139" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11424067..11427651) /note="source:CACAO_M_E84368_F4_scaffold_10 4512 8092" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11427739..11427846 /note="source:INTACT85_F9_scaffold_4-int 12216 12320" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11430377..11431501 /note="source:scaffold_8_CACTA_0859 16511 17643" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11437120..11450181 /note="source:INTACT695_F301_scaffold_5-int 1 13062" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11451797..11451883 /note="source:INTACT224_F176_scaffold_8-int 2 85" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11454602..11457571 /note="source:CACAO_M_E35563_F15_scaffold_5 1 2970" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 11459738..11471746 /locus_tag="TCM_023187" /note="dbxref CacaoGD:Thecc1EG023187" mRNA join(11459738..11459972,11460372..11460496, 11461580..11461655,11467012..11467731,11471405..11471746) /locus_tag="TCM_023187" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400001622.3" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(11459774..11459972,11460372..11460496, 11461580..11461655,11467012..11467268) /locus_tag="TCM_023187" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08578.1" /translation="MEKCQLFILGKWQTSPIKNKKSPAMWKGLKNLRPVICEWHKIKY STMSHKMEELQVELHDLDIEWQRDRALGPNGYNMNFVKMTWPMVKGDLMRFVADFYLK GRLGHGDRGGLWIVDLEIKNRALLNKWLLRFAPSNGWLKFNVDGASSRGSGDTAIGGI LRDSYGTISIRFSKSLGLTDSNKAKLMAIREVFHIFCKSSYYNRYKLWIESDSMNAVY " mobile_element complement(11462097..11464743) /note="source:CACAO_M_E35511_F5_scaffold_5 16070 18702" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 11472056..11475707 /locus_tag="TCM_023189" /note="dbxref CacaoGD:Thecc1EG023189" mRNA join(11472056..11472827,11474427..11475707) /locus_tag="TCM_023189" /product="HXXXD-type acyl-transferase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s18710.1" /inference="similar to AA sequence:ricco:29929.m004521" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05884t00001" CDS join(11472372..11472827,11474427..11475329) /locus_tag="TCM_023189" /note="dbxref ricco:29929.m004521" /codon_start=1 /product="HXXXD-type acyl-transferase family protein" /protein_id="EOY08579.1" /db_xref="TAIR:AT1G65450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80816" /translation="MGTICVEPPSLLQDLKITIQNVSLVFPSQQTERKSMFLSNIDKV LNFPVETVHFFPSHKDFPPHLVAEKLKSTLARLLVPYDFLAGRLRSNPETGRLEIDCN AAGIGFAVASSEYTMDSLGELVYPNPAFGQLILKRMDNLEQDDQPLCIVQVTSFRCGG FAMGMFTNHVTFDGLSFKIFLDNLGALAADKPLAVIPCNDRELLAARSPPCVSFPHLE LAKFLDSNVNHPVFDATSEALDFKVFRLTSGNIADLKEKAKASGGTHKDARITGFNVV TALVWLCKALSWDEETTQERNNNADRESTLLYAVNIRPRLIPPLPRSYTGNAVLTAYA TAKCKEIEEWPFSRLVEMVSEGAKRMTDEYARSAIDWGEIYQGFPNGEFLVSSWWKLG FDEVDYPWGRPRYSCPVVFHRKDIILLFPDVDENNGVNVLVSLPSKEMSKFQSLFLNY LA" mobile_element complement(11476096..11476876) /note="source:CACAO_Mutator_E592_scaffold_3 19606 20357" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(11476872..11476923) /note="source:CACAO_Mutator_E592_scaffold_3 19126 19178" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(11477277..11478669) /note="source:scaffold_8_CACTA_0867 13793 15222" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11477651..11480437) /note="source:CACAO_Mutator_E1018_scaffold_5 1789 4633" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(11480438..11488718) /note="source:CACAO_M_S_E18399_F231_scaffold_3 1223 10562" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11488719..11499824) /note="source:INTACT91_F141_scaffold_4-int 3 10124" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11503201..11503311 /note="source:CACAO_M_S_E100312_F82_scaffold_9 6476 6584" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11503295..11503730 /note="source:CACAO_M_E48667_F42_scaffold_6 4082 4517" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11503727..11505406) /note="source:CACAO_M_S_E52962_F231_scaffold_5 1 1672" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11505407..11505726) /note="source:CACAO_Mutator_E1018_scaffold_5 1458 1779" /mobile_element_type="transposon:TIR/Mutator" mobile_element 11505719..11506639 /note="source:INTACT597_F267_scaffold_2-int 13001 13908" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11506621..11507015 /note="source:CACAO_M_E5326_F22_scaffold_2 20674 21129" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11507225..11507310 /note="source:INTACT265_F12_scaffold_7-int 7169 7254" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11507233..11508551) /note="source:CACAO_M_E24592_F195_scaffold_4 1 1326" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11510522..11510594 /note="source:scaffold_4_CACTA_0491 1406 1475" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11510895..11511207 /note="source:CACAO_M_E5326_F22_scaffold_2 22398 22671" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11511193..11512005) /note="source:scaffold_8_CACTA_0867 11200 12003" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11512696..11513181) /note="source:scaffold_8_CACTA_0867 7316 7801" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11513184..11518839) /note="source:scaffold_8_CACTA_0867 1311 7131" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11515850..11519520) /note="source:CACAO_Mutator_E592_scaffold_3 4029 7637" /mobile_element_type="transposon:TIR/Mutator" mobile_element 11521075..11521145 /note="source:INTACT135F_F90_scaffold_2-int 16988 17059" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11521151..11521779) /note="source:CACAO_M_E41138_F98_scaffold_5 2142 2770" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11526796..11534004) /note="source:CACAO_M_E36454_F98_scaffold_5 2777 9983" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11533995..11534412) /note="source:INTACT93F_F345_scaffold_2-int 16835 17255" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11534434..11534487) /note="source:INTACT93F_F345_scaffold_2-int 16823 16874" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11534595..11536679 /note="source:INTACT1827F_F98_scaffold_15-int 688 2772" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11539390..11540595) /note="source:CACAO_M_S_E4534_F4_scaffold_1 3532 4770" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11540250..11541245 /note="source:CACAO_M_E1841_F5_scaffold_1 21987 22962" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11541249..11541939 /note="source:CACAO_M_E1841_F5_scaffold_1 25799 26505" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11541940..11542479 /note="source:INTACT296_F13_scaffold_9-int 1 562" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11542480..11545436 /note="source:CACAO_M_S_E53436_F7_scaffold_5 1 2957" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11545438..11545741 /note="source:CACAO_M_E9395_F12_scaffold_2 23332 23620" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11545662..11546622 /note="source:CACAO_M_E36038_F90_scaffold_5 804 1808" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11546623..11549555) /note="source:INTACT10_F4_scaffold_6-int 5609 8573" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11552717..11553124) /note="source:CACAO_M_E3654_F4_scaffold_1 4929 5336" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11553125..11556211 /note="source:CACAO_M_E35574_F204_scaffold_5 1 3087" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11556212..11561412) /note="source:INTACT10_F4_scaffold_6-int 1 5211" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(11561349..11562008) /locus_tag="TCM_023196" /note="dbxref CacaoGD:Thecc1EG023196" mRNA complement(11561349..11562008) /locus_tag="TCM_023196" /product="Uncharacterized protein" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.16 coverage" CDS complement(11561612..11561836) /locus_tag="TCM_023196" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08580.1" /translation="MATKIAFLKRRKSSRLAEKSKPVTTFSRQEPLEVSDTPLPDPLS LELPSISSPQPLDVQYGTNESSPSSSSEDA" mobile_element complement(11562149..11562178) /note="source:INTACT296_F13_scaffold_9-int 5173 5202" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11562230..11563767) /note="source:INTACT224_F176_scaffold_8-int 4946 6481" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11563769..11566766 /note="source:CACAO_M_E35575_F89_scaffold_5 1 2998" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11566834..11567590) /note="source:INTACT224_F176_scaffold_8-int 4172 4936" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11571474..11571904 /note="source:CACAO_M_E58012_F15_scaffold_9 1 431" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11572869..11574569 /note="source:CACAO_M_E58012_F15_scaffold_9 1392 3095" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11575010..11575104 /note="source:CACAO_M_E72867_F9_scaffold_10 5063 5157" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11582661..11582711) /note="source:INTACT160_F4_scaffold_7-int 7619 7671" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11583906..11586761 /note="source:CACAO_M_E35581_F15_scaffold_5 1 2822" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11588248..11588671) /note="source:INTACT39F_F22_scaffold_1-int 3821 4249" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11597089..11598110) /note="source:scaffold_5_CACTA_0596 15487 16479" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11598164..11599085) /note="source:scaffold_5_CACTA_0596 14545 15485" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11601593..11608785) /note="source:CACAO_M_E24729_F87_scaffold_4 80 7330" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11608767..11608819) /note="source:CACAO_M_E22900_F87_scaffold_3 4547 4600" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11613075..11614618 /note="source:INTACT85_F9_scaffold_4-int 2 1538" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11617356..11622596 /note="source:CACAO_M_S_E99975_F143_scaffold_9 3 5210" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11622597..11626516) /note="source:CACAO_M_E135_F15_scaffold_1 4631 8547" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11622617..11625458 /note="source:CACAO_M_E35584_F15_scaffold_5 1 2842" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11626528..11629480 /note="source:CACAO_M_S_E99975_F143_scaffold_9 6410 8992" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11629481..11632124 /note="source:CACAO_M_S_E109718_F317_scaffold_9 1 2645" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11632289..11632859 /note="source:scaffold_5_CACTA_0602 2774 3346" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11634509..11634819) /note="source:scaffold_5_CACTA_0596 15111 15423" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11634748..11635696) /note="source:CACAO_M_E11098_F15_scaffold_2 7991 9006" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11634907..11637489 /note="source:INTACT85_F9_scaffold_4-int 12418 15000" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11637909..11637988) /note="source:scaffold_5_CACTA_0596 16858 16936" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11639368..11640810) /note="source:INTACT163_F158_scaffold_5-int 9480 10934" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11640803..11640944) /note="source:INTACT39F_F22_scaffold_1-int 5451 5593" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11642624..11642986) /note="source:INTACT642F_F365_scaffold_5-int 5915 6271" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11646985..11650873 /note="source:CACAO_M_S_E6076_F9_scaffold_2 2529 6419" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11650874..11653847 /note="source:CACAO_M_E35591_F15_scaffold_5 1 2974" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11653848..11654594 /note="source:CACAO_M_E4676_F9_scaffold_2 6444 7219" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11654593..11654676 /note="source:CACAO_M_E44709_F9_scaffold_6 16295 16378" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11654677..11657617 /note="source:CACAO_M_E35594_F52_scaffold_5 1 2941" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11657618..11662178 /note="source:CACAO_M_E44709_F9_scaffold_6 16374 20916" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11662179..11663118) /note="source:CACAO_M_E44709_F9_scaffold_6 1680 2619" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11667004..11667666) /note="source:INTACT224_F176_scaffold_8-int 4172 4831" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11667576..11667682 /note="source:CACAO_M_E45504_F98_scaffold_6 2696 2785" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11669856..11669934) /note="source:INTACT224_F176_scaffold_8-int 2475 2555" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11671549..11672654 /note="source:CACAO_M_S_E53496_F335_scaffold_5 1506 2614" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11675195..11684953) /note="source:CACAO_M_E35511_F5_scaffold_5 2259 12263" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11686067..11686146 /note="source:scaffold_1_CACTA_0028 4045 4126" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11686547..11686733) /note="source:CACAO_M_E53215_F369_scaffold_8 2152 2325" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11686716..11687042 /note="source:CACAO_M_S_E7818_F60_scaffold_2 19312 19637" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11687536..11688186 /note="source:CACAO_M_E58324_F9_scaffold_9 7664 8337" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11688897..11689958) /note="source:INTACT223_F175_scaffold_5-int 6201 7245" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11690255..11690476 /note="source:CACAO_M_E5899_F5_scaffold_2 21827 22049" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11690490..11691977 /note="source:INTACT597_F267_scaffold_2-int 8071 9576" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11691978..11694591 /note="source:CACAO_M_S_E53496_F335_scaffold_5 1 2614" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11694592..11695350 /note="source:INTACT224_F176_scaffold_8-int 3179 3918" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11695348..11695851 /note="source:INTACT597_F267_scaffold_2-int 13007 13537" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11696019..11696359) /note="source:CACAO_M_E24592_F195_scaffold_4 20385 20730" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11697156..11698098 /note="source:CACAO_M_E5899_F5_scaffold_2 21762 22689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11698099..11699699 /note="source:scaffold_3_CACTA_0382 522 2128" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11699143..11700940 /note="source:INTACT597_F267_scaffold_2-int 11308 13101" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11700941..11703497) /note="source:INTACT93F_F345_scaffold_2-int 1 2638" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11704502..11704938 /note="source:CACAO_M_S_E4591_F5_scaffold_1 18869 19375" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11704941..11709618 /note="source:CACAO_M_S_E15657_F60_scaffold_2 3 4691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11709619..11712371 /note="source:CACAO_M_E35627_F15_scaffold_5 1 2753" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11712372..11716671 /note="source:INTACT254_F60_scaffold_3-int 4159 8453" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11716672..11719098) /note="source:CACAO_M_E2863_F51_scaffold_1 689 3111" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11719098..11720458 /note="source:CACAO_M_E43672_F60_scaffold_5 4793 6152" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11720459..11723427 /note="source:CACAO_M_S_E53511_F7_scaffold_5 1 2969" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11723428..11728463 /note="source:CACAO_M_S_E65068_F306_scaffold_5 6591 11583" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11728453..11730761) /note="source:CACAO_M_E58480_F86_scaffold_9 5403 7706" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11730734..11730919) /note="source:INTACT646_F284_scaffold_3-int 1135 1313" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11730755..11734460 /note="source:INTACT543_F86_scaffold_5-int 5667 9404" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11734461..11734592 /note="source:INTACT715_F7_scaffold_5-int 7838 7969" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11734583..11736597 /note="source:INTACT300_F7_scaffold_5-int 4226 6256" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11736592..11736682 /note="source:CACAO_M_S_E65068_F306_scaffold_5 3033 3123" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11736664..11736949 /note="source:CACAO_M_E24389_F60_scaffold_4 8678 8962" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11736951..11737197 /note="source:CACAO_M_S_E4591_F5_scaffold_1 19371 19617" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11740915..11741370 /note="source:CACAO_M_E22186_F143_scaffold_3 7690 8129" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11741286..11741642 /note="source:scaffold_4_CACTA_0493 4028 4374" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11741640..11742549 /note="source:CACAO_M_E11415_F328_scaffold_2 16116 17035" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11741927..11742568) /note="source:INTACT646_F284_scaffold_3-int 3933 4570" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11742551..11742936) /note="source:CACAO_M_E11415_F328_scaffold_2 11307 11691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11742553..11743104 /note="source:CACAO_M_S_E1931_F7_scaffold_1 1 550" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11743212..11744804 /note="source:scaffold_8_CACTA_0858 11369 12930" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11744905..11745638 /note="source:scaffold_8_CACTA_0858 12973 13704" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11745059..11745992) /note="source:CACAO_M_E11415_F328_scaffold_2 9272 10195" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11745985..11747826) /note="source:INTACT646_F284_scaffold_3-int 2080 3961" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11747826..11748247 /note="source:CACAO_M_S_E7818_F60_scaffold_2 6330 6749" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11748277..11749114 /note="source:INTACT255_F60_scaffold_8-int 4610 5381" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11749150..11749291 /note="source:INTACT33_F7_scaffold_5-int 11231 11373" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11749270..11750725 /note="source:CACAO_M_S_E54060_F7_scaffold_5 1503 2999" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11750726..11751525 /note="source:CACAO_M_E5899_F5_scaffold_2 21852 22691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11753335..11756284 /note="source:CACAO_M_S_E53523_F44_scaffold_5 1 2950" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11758080..11774209 /note="source:INTACT649F_F368_scaffold_5-int 1 16130" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11774642..11777334) /note="source:CACAO_M_S_E18399_F231_scaffold_3 7931 10562" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11778500..11778517 /note="source:INTACT616_F52_scaffold_1-int 3499 3518" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11778518..11786268) /note="source:CACAO_M_E48700_F15_scaffold_6 2817 10592" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11786265..11788242 /note="source:CACAO_M_E141_F15_scaffold_1 769 2754" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(11789451..11797648) /locus_tag="TCM_023221" /note="dbxref CacaoGD:Thecc1EG023221" mRNA complement(join(11789451..11789787,11790486..11790562, 11791048..11791160,11793092..11793139,11794642..11794677, 11794868..11794997,11795361..11795852,11796281..11796468, 11797126..11797648)) /locus_tag="TCM_023221" /product="Uncharacterized protein" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400021026" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.21 coverage" CDS complement(join(11793139,11794642..11794677, 11794868..11794997,11795361..11795852,11796281..11796468, 11797126..11797631)) /locus_tag="TCM_023221" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08581.1" /db_xref="Phytozome:PGSC0003DMP400021026" /translation="MLAMPFKHSVIEKFTNMPCMQEIRMTFKGIELVGAYEIWWLDYK YVLIFLTNEHDFNRIWICQVWFIVNKKIRVFKWSLKFQLEKESSVVPVWFSFPNLPVH LHEKSALMMIARTVDKPFFVDEATANRSRPSVARVCVEYDCQKPPLDHVWIVSHDRET KAMTGGFSQKKAKPVLANLVSVLNADKDEGSSMQFLDKTNDHIEEHQWPDRKIMATAD SGDGCVNIPQSKLEPVVNISRAQYFRMRLDFDKVVSNCSHKIWVFSSVEVCNEVLLDH IQCLHVKLSLPWLPHLLFTSFIYAKCTRQKRMELWNSLRLLSLDMQGPCMVGGNFNAI VSCAERLNGAPPHGGSMEDFAAMLLDCGLLDTSFERNNFTWTNNDMFQRLNRVVYNPK WAESYAKLNSQLSIKEFFWQQKSRVKWLVKGELNTKFFHMRMQKKKDSISSGSQECSL " mobile_element 11798002..11798109 /note="source:INTACT189_F49_scaffold_5-int 17856 17962" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11798110..11800575 /note="source:CACAO_M_E9511_F359_scaffold_2 1 2486" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11800676..11804332 /note="source:INTACT453F_F359_scaffold_4-int 2526 6195" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11803737..11804501) /note="source:CACAO_M_E10929_F98_scaffold_2 4497 5261" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11806212..11808417 /note="source:CACAO_M_E9999_F359_scaffold_2 7254 9461" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11808518..11809421 /note="source:CACAO_M_E9511_F359_scaffold_2 2165 3069" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11809422..11810011 /note="source:INTACT189_F49_scaffold_5-int 17958 18572" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11810180..11810450) /note="source:CACAO_M_S_E83372_F14_scaffold_6 22513 22791" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11810871..11811191 /note="source:INTACT189_F49_scaffold_5-int 19301 19620" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11812591..11812705 /note="source:CACAO_M_E58324_F9_scaffold_9 7650 7772" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11813621..11815199) /note="source:CACAO_M_E24592_F195_scaffold_4 19420 20971" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11815696..11817783 /note="source:CACAO_M_E14113_F106_scaffold_3 18694 20784" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11818224..11818771 /note="source:scaffold_4_CACTA_0493 3829 4440" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11819440..11819491) /note="source:CACAO_M_E69217_F98_scaffold_9 7493 7528" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11819531..11819578) /note="source:scaffold_4_CACTA_0493 1578 1626" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11819692..11820013) /note="source:INTACT224_F176_scaffold_8-int 13544 13860" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11820470..11821009 /note="source:CACAO_M_E3248_F5_scaffold_1 17258 17793" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11821538..11822586) /note="source:CACAO_M_E65323_F12_scaffold_9 9718 10746" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11822599..11823607) /note="source:CACAO_M_E3248_F5_scaffold_1 2802 3626" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11823608..11826487 /note="source:CACAO_M_E35665_F15_scaffold_5 1 2862" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11826488..11826687) /note="source:CACAO_M_E3248_F5_scaffold_1 2454 2633" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11826683..11827780) /note="source:INTACT407F_F356_scaffold_4-int 3902 5005" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11827750..11829329 /note="source:CACAO_M_E35811_F12_scaffold_5 16034 17644" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11829330..11830189 /note="source:scaffold_1_CACTA_0011 8165 9045" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11830498..11830998) /note="source:INTACT563_F255_scaffold_10-int 16602 17128" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11830996..11831314) /note="source:CACAO_M_E65323_F12_scaffold_9 7735 8031" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11831297..11831475 /note="source:CACAO_M_E35674_F13_scaffold_5 9051 9210" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11833743..11834454) /note="source:CACAO_M_E1841_F5_scaffold_1 14436 15161" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11834710..11835157) /note="source:CACAO_M_E1841_F5_scaffold_1 10538 10990" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11835155..11837720) /note="source:CACAO_M_E33213_F12_scaffold_4 2281 4839" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11837721..11851631 /note="source:INTACT201_F33_scaffold_5-int 1 13911" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11851633..11852071 /note="source:INTACT126_F14_scaffold_3-int 8662 9099" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11852072..11853015) /note="source:CACAO_M_E13604_F90_scaffold_3 8602 9552" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11853759..11859530 /note="source:CACAO_M_E35674_F13_scaffold_5 1 5765" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11859631..11866036 /note="source:CACAO_M_E35674_F13_scaffold_5 5766 12171" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11866137..11866881 /note="source:CACAO_M_E35674_F13_scaffold_5 12172 12916" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11866982..11872920 /note="source:CACAO_M_E35674_F13_scaffold_5 12917 18855" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11874427..11874577 /note="source:CACAO_M_S_E5046_F335_scaffold_1 18131 18279" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11874551..11874603 /note="source:CACAO_M_E3248_F5_scaffold_1 6173 6226" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11874871..11875046 /note="source:CACAO_M_E1841_F5_scaffold_1 10339 10514" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11875532..11876177) /note="source:CACAO_M_E1841_F5_scaffold_1 4201 4748" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11876878..11876971 /note="source:INTACT690_F13_scaffold_1-int 8178 8273" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11876953..11877186 /note="source:CACAO_M_E1841_F5_scaffold_1 25962 26193" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11877185..11880816 /note="source:CACAO_M_E11662_F12_scaffold_2 4780 8500" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11879831..11884511) /note="source:INTACT37_F117_scaffold_2-int 1723 6445" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11883722..11885416 /note="source:CACAO_M_E11662_F12_scaffold_2 4780 6477" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11885788..11885967 /note="source:CACAO_M_E23991_F4_scaffold_4 8208 8387" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 11885968..11885996 /note="source:CACAO_M_E11662_F12_scaffold_2 6849 7044" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11885998..11887269 /note="source:CACAO_M_E23991_F4_scaffold_4 8549 9874" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11889347..11891667) /note="source:INTACT180_F13_scaffold_3-int 3440 5675" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11890515..11896399 /note="source:INTACT224_F176_scaffold_8-int 4830 10740" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11896402..11896599 /note="source:CACAO_M_S_E18399_F231_scaffold_3 2792 2990" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11896633..11898483) /note="source:CACAO_M_E43069_F4_scaffold_5 3 1854" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11900940..11905839) /note="source:CACAO_M_S_E32051_F7_scaffold_3 4017 8917" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11904348..11906455 /note="source:INTACT762_F78_scaffold_4-int 3172 5276" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11907357..11907757 /note="source:INTACT762_F78_scaffold_4-int 6152 6552" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11908484..11912162 /note="source:CACAO_M_E48588_F7_scaffold_6 6390 10078" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11912190..11912526 /note="source:CACAO_M_S_E4534_F4_scaffold_1 3762 4076" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(11912732..11913510) /note="source:CACAO_M_S_E7818_F60_scaffold_2 5120 5903" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(11912795..11913948) /locus_tag="TCM_023237" /note="dbxref CacaoGD:Thecc1EG023237" mRNA complement(join(11912795..11913617,11913724..11913948)) /locus_tag="TCM_023237" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013179t1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.68 coverage" CDS complement(join(11913481..11913617,11913724..11913904)) /locus_tag="TCM_023237" /note="paralog of Thecc1EG013179t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08582.1" /translation="MDGLMEPLFRAIASKDFDTYSTPVDYTQRIEMRSNESRVAKDSV KRAKIEGHQGRRDFSSVFGGSKIQGRVVKLSIVAILVGYDMKDDAFVLQEFVSCHSPI FGP" mobile_element 11915801..11917035 /note="source:CACAO_M_S_E7818_F60_scaffold_2 5879 7117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11917350..11917414) /note="source:INTACT410F_F357_scaffold_4-int 10005 10071" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11931127..11931263 /note="source:scaffold_2_CACTA_0260 3898 4034" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11931723..11931885 /note="source:CACAO_M_E86361_F7_scaffold_15 6187 6350" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11931861..11933061) /note="source:INTACT41F_F338_scaffold_1-int 1104 2280" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11933042..11933138) /note="source:CACAO_M_E70891_F369_scaffold_10 12332 12431" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11933062..11933892 /note="source:INTACT183F_F349_scaffold_3-int 6817 7633" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11933899..11935572) /note="source:CACAO_M_S_E18399_F231_scaffold_3 7871 9545" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11935570..11936747 /note="source:CACAO_M_E24592_F195_scaffold_4 2670 3853" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11937317..11938252) /note="source:scaffold_1_CACTA_0011 5257 6188" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11939489..11939533) /note="source:INTACT189_F49_scaffold_5-int 17728 17772" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11940346..11950515 /note="source:CACAO_M_E35704_F13_scaffold_5 1 10170" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11950850..11953806 /note="source:CACAO_M_S_E53595_F158_scaffold_5 1 2957" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11955638..11956579) /note="source:INTACT26_F13_scaffold_9-int 2918 3849" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11956575..11956730) /note="source:CACAO_M_E870_F22_scaffold_1 4061 4215" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11956944..11958299) /note="source:CACAO_M_S_E7818_F60_scaffold_2 5808 7117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11958537..11961038 /note="source:CACAO_M_E42395_F3_scaffold_5 15055 17484" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11961039..11961246) /note="source:CACAO_M_S_E7818_F60_scaffold_2 5510 5720" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11961584..11963817) /note="source:CACAO_M_E65323_F12_scaffold_9 7732 9965" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11963748..11963836 /note="source:INTACT120_F22_scaffold_3-int 9578 9664" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11965858..11966393) /note="source:CACAO_M_E13038_F22_scaffold_3 12229 12757" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11967696..11969217 /note="source:INTACT410F_F357_scaffold_4-int 2604 4125" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11968036..11969364) /note="source:CACAO_M_E9677_F7_scaffold_2 5147 6464" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11970440..11975167) /note="source:INTACT213F_F15_scaffold_3-int 8059 11012" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11975170..11983128 /note="source:scaffold_2_CACTA_0259 43 8090" /mobile_element_type="transposon:TIR/CACTA" mobile_element 11985980..11986838 /note="source:INTACT410F_F357_scaffold_4-int 4342 5197" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11986835..11987494 /note="source:CACAO_M_S_E14330_F13_scaffold_2 13201 13650" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11987197..11993842) /note="source:INTACT743_F318_scaffold_2-int 2177 8839" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11993839..11995404) /note="source:CACAO_M_E85799_F359_scaffold_12 1 1568" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11995406..11996029) /note="source:scaffold_4_CACTA_0493 4605 5218" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(11996028..11997760) /note="source:INTACT743_F318_scaffold_2-int 169 1893" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 11996943..11998115 /note="source:INTACT215F_F14_scaffold_3-int 10394 11511" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(11998891..11999008) /note="source:CACAO_M_E22348_F13_scaffold_3 9043 9156" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12000930..12001012) /note="source:INTACT563_F255_scaffold_10-int 554 636" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12001123..12001678 /note="source:INTACT215F_F14_scaffold_3-int 12412 12966" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12001305..12002409) /note="source:INTACT563_F255_scaffold_10-int 16521 17666" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12001825..12002971 /note="source:INTACT597_F267_scaffold_2-int 8971 10137" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12002948..12005158 /note="source:INTACT597_F267_scaffold_2-int 10294 12511" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12005151..12006315) /note="source:INTACT285_F13_scaffold_9-int 1227 2397" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12006306..12007625) /note="source:CACAO_M_E35674_F13_scaffold_5 6938 8163" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12006624..12007645 /note="source:INTACT215F_F14_scaffold_3-int 10575 11578" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12008223..12008366 /note="source:CACAO_Mariner_E229_scaffold_9 133 280" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(12008448..12008530) /note="source:INTACT563_F255_scaffold_10-int 554 636" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12008641..12009254 /note="source:INTACT215F_F14_scaffold_3-int 6065 6644" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12009202..12009259) /note="source:INTACT88_F12_scaffold_4-int 10278 10335" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12009259..12009770) /note="source:scaffold_4_CACTA_0493 4123 4612" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12009929..12010808) /note="source:scaffold_4_CACTA_0493 2830 3714" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12010735..12010840 /note="source:INTACT263_F12_scaffold_6-int 9843 9947" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12011165..12012280) /note="source:INTACT285_F13_scaffold_9-int 8938 10062" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12012256..12012418) /note="source:INTACT193_F12_scaffold_1-int 6566 6725" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12012279..12012396 /note="source:CACAO_M_E33933_F9_scaffold_4 24911 25029" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12013631..12014055 /note="source:CACAO_M_E23583_F60_scaffold_4 1 420" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12014042..12014061) /note="source:INTACT199_F5_scaffold_6-int 1097 1107" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12014062..12016295 /note="source:CACAO_M_E69381_F13_scaffold_9 1 2234" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12016292..12018911) /note="source:CACAO_M_S_E99244_F4_scaffold_9 3760 6342" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12017434..12019189 /note="source:CACAO_M_S_E19828_F19_scaffold_3 2409 4179" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12019186..12021837) /note="source:CACAO_M_E52239_F256_scaffold_7 19815 22438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12021833..12024783 /note="source:CACAO_M_E10603_F306_scaffold_2 4817 7769" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12024797..12025701 /note="source:CACAO_M_S_E19828_F19_scaffold_3 4172 5080" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12025694..12026050 /note="source:INTACT518_F239_scaffold_2-int 3743 4097" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12026050..12027274) /note="source:CACAO_M_E23991_F4_scaffold_4 8558 9874" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12027349..12028930) /note="source:CACAO_M_E13038_F22_scaffold_3 11394 12925" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12028930..12030108) /note="source:CACAO_M_E13038_F22_scaffold_3 10684 11862" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12030104..12032494 /note="source:CACAO_M_S_E14932_F233_scaffold_2 7334 9724" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12032480..12032674 /note="source:CACAO_M_S_E99035_F335_scaffold_9 7108 7300" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12032821..12033182 /note="source:CACAO_M_S_E14932_F233_scaffold_2 10114 10468" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12033183..12034865 /note="source:CACAO_M_S_E53642_F60_scaffold_5 1 1683" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12034866..12037197 /note="source:CACAO_M_E11656_F17_scaffold_2 1834 4130" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12037197..12045264) /note="source:INTACT285_F13_scaffold_9-int 1 8054" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12045265..12046593) /note="source:CACAO_M_S_E99770_F60_scaffold_9 1 1316" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12049102..12049894) /note="source:CACAO_M_E33282_F13_scaffold_4 11747 12527" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12049735..12050229 /note="source:INTACT280_F60_scaffold_5-int 9187 9684" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12049872..12061396) /note="source:INTACT620_F275_scaffold_2-int 1 11864" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12061564..12065208 /note="source:CACAO_M_S_E32590_F18_scaffold_4 3251 6923" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12065209..12066504 /note="source:CACAO_M_E58905_F86_scaffold_9 1 1303" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12066974..12067621 /note="source:CACAO_M_S_E5210_F12_scaffold_1 9758 10403" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12067621..12069248 /note="source:CACAO_M_E49368_F86_scaffold_7 1301 2927" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12069249..12072840 /note="source:CACAO_M_S_E32590_F18_scaffold_4 6919 10505" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12073119..12073384) /note="source:scaffold_9_CACTA_0930 1 268" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12075253..12075396) /note="source:CACAO_M_E35674_F13_scaffold_5 7213 7353" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12081211..12081652) /note="source:CACAO_M_S_E32590_F18_scaffold_4 1 432" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12082872..12084684) /note="source:INTACT167_F5_scaffold_2-int 3867 5692" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12091445..12091606) /note="source:CACAO_M_S_E4413_F3_scaffold_1 1547 1709" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12091607..12092686 /note="source:CACAO_M_S_E20068_F245_scaffold_3 1 1080" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12092687..12094107 /note="source:CACAO_M_E11428_F86_scaffold_2 1 1426" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12094108..12094142) /note="source:CACAO_M_E22680_F86_scaffold_3 1536 1570" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12094133..12095185 /note="source:INTACT699_F86_scaffold_3-int 5600 6660" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12095178..12095238) /note="source:CACAO_M_S_E98180_F42_scaffold_8 3068 3127" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12095208..12095263 /note="source:CACAO_M_E22722_F42_scaffold_3 7066 7121" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12095245..12099908 /note="source:CACAO_M_E1005_F86_scaffold_1 1790 6439" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12099576..12099949 /note="source:scaffold_5_CACTA_0601 11270 11625" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12099970..12100917) /note="source:CACAO_M_E14957_F86_scaffold_3 6054 7000" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12100918..12102821) /note="source:CACAO_on_S_E58_scaffold_2 9224 11128" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(12102822..12103054) /note="source:CACAO_M_S_E4413_F3_scaffold_1 18171 18403" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12103656..12103763) /note="source:INTACT120_F22_scaffold_3-int 9549 9651" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12103669..12104034 /note="source:CACAO_M_E3248_F5_scaffold_1 1650 2013" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12104030..12104951) /note="source:CACAO_M_E5899_F5_scaffold_2 20320 21226" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12105121..12105704) /note="source:CACAO_M_S_E4591_F5_scaffold_1 17894 18519" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12105711..12108804 /note="source:CACAO_M_E35767_F42_scaffold_5 1 3094" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12109867..12110480 /note="source:CACAO_M_E5899_F5_scaffold_2 19652 20159" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12110784..12111756 /note="source:CACAO_M_S_E17777_F2_scaffold_3 3001 3967" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12111775..12112296 /note="source:CACAO_M_E366_F42_scaffold_1 1 522" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12112860..12113652) /note="source:CACAO_M_E48603_F42_scaffold_6 497 1291" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12114390..12115075) /note="source:CACAO_M_E22722_F42_scaffold_3 7108 7789" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12115385..12116950 /note="source:CACAO_M_E52352_F42_scaffold_7 3382 4946" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12121902..12122242 /note="source:CACAO_M_E44087_F42_scaffold_5 2511 2850" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12122243..12122420 /note="source:CACAO_M_S_E17777_F2_scaffold_3 6897 7079" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12126054..12129146) /note="source:CACAO_M_S_E85987_F9_scaffold_7 1636 4751" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12129147..12132053 /note="source:CACAO_M_S_E53671_F83_scaffold_5 1 2907" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12132054..12133551) /note="source:INTACT691_F9_scaffold_7-int 153 1663" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12133487..12133630 /note="source:CACAO_M_S_E5872_F9_scaffold_2 1297 1439" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12133627..12134460 /note="source:CACAO_M_S_E17777_F2_scaffold_3 7238 8035" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12134559..12142776 /note="source:CACAO_M_E12058_F3_scaffold_2 1 8216" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12144443..12145745) /note="source:INTACT319_F3_scaffold_1-int 4240 5515" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12146208..12160106 /note="source:INTACT726_F314_scaffold_5-int 1 13899" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12161125..12164082 /note="source:CACAO_M_E35778_F7_scaffold_5 1 2958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12165112..12167582 /note="source:scaffold_1_CACTA_0016 2873 5325" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12166748..12167712 /note="source:CACAO_M_E33213_F12_scaffold_4 9748 10702" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12172074..12172398) /note="source:INTACT674_F296_scaffold_6-int 4598 4923" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12174473..12175057) /note="source:CACAO_M_E43672_F60_scaffold_5 16012 16598" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12175163..12175396 /note="source:INTACT649F_F368_scaffold_5-int 4138 4371" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12175673..12177906 /note="source:CACAO_M_E35779_F98_scaffold_5 232 2465" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12178637..12178990 /note="source:INTACT649F_F368_scaffold_5-int 14120 14479" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12179060..12179490 /note="source:INTACT649F_F368_scaffold_5-int 366 800" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12179633..12182760 /note="source:CACAO_M_E35783_F15_scaffold_5 1 3105" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12183223..12191171) /note="source:INTACT548_F247_scaffold_9-int 1 7958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12194039..12195537) /note="source:CACAO_M_S_E88822_F170_scaffold_7 9433 10931" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12195706..12204991 /note="source:CACAO_M_S_E66372_F33_scaffold_5 1692 10906" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12204993..12206091 /note="source:CACAO_M_E24475_F44_scaffold_4 1833 2930" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12206762..12209378) /note="source:CACAO_M_S_E65716_F44_scaffold_5 7129 9812" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12211142..12211318 /note="source:INTACT649F_F368_scaffold_5-int 769 877" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12211950..12212504 /note="source:CACAO_M_E58324_F9_scaffold_9 9659 10221" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12212600..12213192 /note="source:INTACT649F_F368_scaffold_5-int 775 1352" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12213192..12213228 /note="source:INTACT189_F49_scaffold_5-int 18491 18527" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12215810..12216251 /note="source:scaffold_8_CACTA_0859 17141 17578" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12218089..12218658) /note="source:CACAO_M_S_E52921_F60_scaffold_5 16548 17104" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12223477..12223535) /note="source:CACAO_M_E22186_F143_scaffold_3 11446 11504" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12223867..12224556 /note="source:INTACT39F_F22_scaffold_1-int 3561 4243" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12224920..12226100) /note="source:CACAO_M_E11662_F12_scaffold_2 6261 7454" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12225303..12226101 /note="source:INTACT39F_F22_scaffold_1-int 5141 5952" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12226099..12226821) /note="source:CACAO_M_S_E6027_F12_scaffold_2 3914 4634" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12229909..12231300) /note="source:CACAO_M_E11662_F12_scaffold_2 4766 6168" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12231283..12233384) /note="source:CACAO_M_S_E109853_F60_scaffold_9 7930 10031" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12233399..12233633) /note="source:CACAO_M_S_E109853_F60_scaffold_9 7394 7628" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12233634..12234724) /note="source:CACAO_M_E50672_F328_scaffold_7 1899 2987" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12234675..12236582 /note="source:CACAO_M_E11415_F328_scaffold_2 11981 13923" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12236328..12236612) /note="source:CACAO_M_E59600_F12_scaffold_9 5770 6055" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12236724..12236877) /note="source:CACAO_M_E59600_F12_scaffold_9 4842 4994" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12237225..12238288) /note="source:CACAO_M_S_E14649_F328_scaffold_2 11707 12792" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12238239..12240008 /note="source:CACAO_M_E11415_F328_scaffold_2 11981 13785" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12240009..12242652) /note="source:CACAO_M_S_E109853_F60_scaffold_9 4818 7398" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12243642..12243711) /note="source:INTACT189_F49_scaffold_5-int 2748 2824" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12244242..12247443 /note="source:CACAO_M_E35801_F328_scaffold_5 1 3202" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12249747..12253458 /note="source:CACAO_M_E4870_F14_scaffold_2 1 3715" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12253454..12255069) /note="source:CACAO_M_E12297_F14_scaffold_3 1 1617" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12255070..12257330) /note="source:CACAO_M_E43672_F60_scaffold_5 13418 15693" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12257335..12260007 /note="source:CACAO_M_E35803_F231_scaffold_5 1 2673" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12260011..12261913) /note="source:CACAO_M_E49885_F60_scaffold_7 538 2485" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12266117..12267516) /note="source:CACAO_M_E58324_F9_scaffold_9 7852 9292" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12266451..12267658 /note="source:CACAO_M_E58324_F9_scaffold_9 22801 24069" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12272514..12272833) /note="source:CACAO_M_E3248_F5_scaffold_1 3935 4253" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12272831..12272841) /note="source:CACAO_M_E3248_F5_scaffold_1 1197 1207" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12272842..12296830 /note="source:CACAO_M_E35811_F12_scaffold_5 1 23989" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12296831..12301482) /note="source:INTACT697_F302_scaffold_2-int 11799 16125" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12301469..12301590) /note="source:CACAO_M_E65050_F7_scaffold_9 4497 4625" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12301473..12301575 /note="source:INTACT224_F176_scaffold_8-int 15146 15248" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12301551..12301639 /note="source:CACAO_M_E9677_F7_scaffold_2 5147 5232" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12302698..12303291) /note="source:INTACT563_F255_scaffold_10-int 2523 3118" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12303292..12306243 /note="source:CACAO_M_E35818_F15_scaffold_5 1 2952" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12306244..12307840) /note="source:INTACT563_F255_scaffold_10-int 913 2527" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12308115..12308238 /note="source:INTACT215F_F14_scaffold_3-int 12267 12393" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12308137..12308891) /note="source:INTACT563_F255_scaffold_10-int 43 750" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12308324..12309079 /note="source:CACAO_Mariner_E229_scaffold_9 513 1265" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(12309525..12310944) /note="source:INTACT697_F302_scaffold_2-int 1669 3084" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12310945..12313554 /note="source:CACAO_M_E35823_F144_scaffold_5 1 2610" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12313555..12314403) /note="source:INTACT697_F302_scaffold_2-int 831 1673" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12314336..12314873) /note="source:INTACT563_F255_scaffold_10-int 17280 17829" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12314402..12315076) /note="source:INTACT697_F302_scaffold_2-int 1 662" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12320820..12320858) /note="source:INTACT62_F12_scaffold_1-int 8196 8236" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12323641..12325115 /note="source:INTACT95_F143_scaffold_9-int 4412 5900" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12325268..12325457) /note="source:CACAO_M_E65323_F12_scaffold_9 9076 9275" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12325414..12325589 /note="source:INTACT215F_F14_scaffold_3-int 11381 11552" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12326698..12327064) /note="source:CACAO_M_E35511_F5_scaffold_5 18323 18719" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12335181..12335398) /note="source:CACAO_M_S_E99574_F14_scaffold_9 7812 8029" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12335398..12335873 /note="source:INTACT215F_F14_scaffold_3-int 12674 13170" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12335509..12335863) /note="source:CACAO_M_E5800_F12_scaffold_2 4224 4582" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12337499..12337767 /note="source:CACAO_M_E1841_F5_scaffold_1 3099 3366" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12340795..12342696 /note="source:CACAO_M_S_E7818_F60_scaffold_2 9400 11302" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(12341200..12343170) /locus_tag="TCM_023267" /note="dbxref CacaoGD:Thecc1EG023267" mRNA complement(join(12341200..12342451,12342569..12343170)) /locus_tag="TCM_023267" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400063580" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023224t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400058399" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.71 coverage" CDS complement(join(12342030..12342451,12342569..12342695)) /locus_tag="TCM_023267" /note="paralog of Thecc1EG023224t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08583.1" /db_xref="Phytozome:PGSC0003DMP400058399" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLE9" /translation="MKKSCSMAHQLQGSAFGSTQPASFAALVTASFDRDASRSRGRVV SSTFSICDMNARVLFNPGFTHSFVSPCFAPRLGKERVMKEEQLVVSTPLREVFVAKWE YRSCVVRVEQKDTLVNLVQLDTLDFDVILGMDWLSPYHASMDCYHKLIRFDFPSEPSV SIKGDRSNAPTNLISVMSTRVY" mobile_element 12342697..12345687 /note="source:CACAO_M_S_E53732_F7_scaffold_5 1 2991" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12346761..12347869 /note="source:CACAO_M_S_E7818_F60_scaffold_2 18197 19306" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12355013..12357808) /note="source:CACAO_M_E13604_F90_scaffold_3 4226 7012" /mobile_element_type="retrotransposon:LTR/Copia" gene 12360742..12369108 /locus_tag="TCM_023269" /note="dbxref CacaoGD:Thecc1EG023269" mRNA join(12360742..12360823,12368503..12369108) /locus_tag="TCM_023269" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.12 coverage" mobile_element 12360851..12363297 /note="source:CACAO_M_E71058_F389_scaffold_10 1 2447" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12363485..12363558) /note="source:CACAO_M_E58601_F7_scaffold_9 5606 5670" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12363542..12364012 /note="source:CACAO_M_E58601_F7_scaffold_9 9025 9523" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12363691..12364217) /note="source:CACAO_M_S_E7818_F60_scaffold_2 6587 7117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12364350..12364812) /note="source:CACAO_M_S_E7818_F60_scaffold_2 6150 6604" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12364939..12365069) /note="source:CACAO_M_S_E7818_F60_scaffold_2 19279 19401" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12365025..12365079 /note="source:INTACT180_F13_scaffold_3-int 4746 4800" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12365077..12365164 /note="source:scaffold_2_CACTA_0261 11424 11510" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12365086..12367637 /note="source:CACAO_M_E33213_F12_scaffold_4 8120 10702" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12367717..12368494) /note="source:CACAO_M_S_E7818_F60_scaffold_2 5125 5904" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS 12368712..12369062 /locus_tag="TCM_023269" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08584.1" /translation="MISFRLLSLGTINIGHQMACPKAQTSQHMQSHTSIYIYIYIYIY IYTYIYIYIYIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHTTILYIYIYIYI YIYIYIHIYISSLA" mobile_element 12370736..12370986 /note="source:INTACT180_F13_scaffold_3-int 3163 3407" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12372282..12372317 /note="source:CACAO_M_E42809_F5_scaffold_5 6335 6370" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12372726..12374052) /note="source:CACAO_M_E58601_F7_scaffold_9 4312 5669" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12374438..12376167 /note="source:CACAO_M_E35838_F60_scaffold_5 1 1730" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12379914..12381567 /note="source:CACAO_M_S_E109853_F60_scaffold_9 4818 6512" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12381589..12384230 /note="source:INTACT180_F13_scaffold_3-int 3161 5793" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12384214..12385237 /note="source:CACAO_M_S_E109853_F60_scaffold_9 13916 14929" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12385239..12385667) /note="source:CACAO_M_E86361_F7_scaffold_15 3857 4288" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12386577..12389096) /note="source:CACAO_M_E13604_F90_scaffold_3 8601 11158" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12391914..12394823 /note="source:CACAO_M_E35850_F81_scaffold_5 1 2910" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12397667..12397758) /note="source:INTACT479_F81_scaffold_2-int 2866 2958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12397678..12398329 /note="source:CACAO_M_S_E7818_F60_scaffold_2 5125 5776" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12398330..12402292 /note="source:CACAO_M_S_E15657_F60_scaffold_2 3 3968" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12402293..12405502 /note="source:CACAO_M_E12756_F7_scaffold_3 1 3201" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12405503..12408432 /note="source:CACAO_M_E35852_F273_scaffold_5 1 2930" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12408433..12412397 /note="source:CACAO_M_E12756_F7_scaffold_3 3197 7162" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12412397..12414348 /note="source:CACAO_M_E4498_F7_scaffold_2 1026 2986" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12414349..12418345 /note="source:CACAO_M_E49885_F60_scaffold_7 6684 12137" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12418053..12419742) /note="source:CACAO_M_E22398_F15_scaffold_3 927 2660" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12419846..12420124) /note="source:CACAO_M_S_E52673_F15_scaffold_5 8785 9064" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12419959..12420147 /note="source:INTACT1221F_F373_scaffold_6-int 7179 7373" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12420124..12420465 /note="source:CACAO_M_E49857_F85_scaffold_7 20684 21036" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12420566..12420855 /note="source:CACAO_M_E49857_F85_scaffold_7 374 663" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12421776..12422069 /note="source:CACAO_M_E12297_F14_scaffold_3 7432 7725" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12423463..12423721 /note="source:CACAO_M_E49857_F85_scaffold_7 23620 23879" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12431349..12432881 /note="source:CACAO_M_E51582_F15_scaffold_7 1 2947" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12432861..12434445 /note="source:CACAO_M_S_E15657_F60_scaffold_2 107 1710" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12434441..12435189 /note="source:CACAO_M_S_E7818_F60_scaffold_2 5766 6501" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12435180..12435802 /note="source:CACAO_M_S_E7818_F60_scaffold_2 6638 7279" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12435805..12436337) /note="source:INTACT506_F233_scaffold_3-int 2276 2813" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12436347..12437052 /note="source:CACAO_M_E58324_F9_scaffold_9 21588 22304" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12437067..12437101) /note="source:CACAO_M_E3109_F15_scaffold_1 2627 2661" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12437071..12439323) /note="source:CACAO_M_S_E144909_F278_scaffold_10 8068 10336" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12439324..12448491 /note="source:CACAO_M_E35867_F86_scaffold_5 1 9168" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12448492..12449080) /note="source:CACAO_M_E52239_F256_scaffold_7 8358 8944" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12448850..12449125 /note="source:CACAO_M_E52180_F15_scaffold_7 2527 2790" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12449111..12450118 /note="source:CACAO_M_E52239_F256_scaffold_7 5382 6438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12450103..12454140) /note="source:INTACT506_F233_scaffold_3-int 5426 9590" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12454141..12457048 /note="source:CACAO_M_E35868_F81_scaffold_5 1 2908" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12457049..12458670) /note="source:INTACT506_F233_scaffold_3-int 3847 5430" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12457632..12459109 /note="source:CACAO_M_S_E14932_F233_scaffold_2 8101 9575" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12459156..12461872) /note="source:INTACT563_F255_scaffold_10-int 2602 4564" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12461859..12463918) /note="source:CACAO_M_E35511_F5_scaffold_5 16512 18679" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12463912..12465667 /note="source:CACAO_M_E35511_F5_scaffold_5 16070 17887" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12465665..12466286) /note="source:INTACT39F_F22_scaffold_1-int 2081 2705" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12466302..12466707 /note="source:INTACT597_F267_scaffold_2-int 17164 17568" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12466708..12467102) /note="source:INTACT563_F255_scaffold_10-int 17374 17767" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12467103..12470298 /note="source:CACAO_M_S_E53787_F328_scaffold_5 1 3186" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12470299..12471424) /note="source:INTACT563_F255_scaffold_10-int 16256 17368" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12471660..12472190) /note="source:INTACT563_F255_scaffold_10-int 15745 16281" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12472177..12473608 /note="source:CACAO_M_E35511_F5_scaffold_5 5252 6664" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12473608..12474041 /note="source:CACAO_M_E5326_F22_scaffold_2 19816 20249" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12474020..12476789 /note="source:CACAO_M_S_E144397_F164_scaffold_10 164 2938" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12476810..12477396 /note="source:CACAO_M_E5326_F22_scaffold_2 22091 22673" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12477415..12478710 /note="source:CACAO_M_E35511_F5_scaffold_5 6660 7958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12478713..12481278) /note="source:CACAO_M_E65313_F266_scaffold_9 1 2583" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12481279..12481710 /note="source:CACAO_M_E35511_F5_scaffold_5 7954 8386" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12481711..12483405 /note="source:CACAO_M_E35879_F3_scaffold_5 1 1695" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12484323..12486293 /note="source:CACAO_M_E35511_F5_scaffold_5 11570 13062" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12486294..12489190 /note="source:INTACT540_F242_scaffold_5-int 1 2927" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12489189..12489762 /note="source:CACAO_M_E35511_F5_scaffold_5 13056 13627" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12489763..12499665 /note="source:INTACT657_F288_scaffold_5-int 1 9903" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12501557..12501624 /note="source:scaffold_5_CACTA_0610 9261 9329" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12501563..12502435) /note="source:CACAO_M_E5899_F5_scaffold_2 3588 4469" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12501718..12504046 /note="source:CACAO_M_E53264_F15_scaffold_8 380 2726" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12504966..12505352 /note="source:CACAO_M_S_E84261_F4_scaffold_6 10265 10646" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12505340..12505395) /note="source:INTACT224_F176_scaffold_8-int 13969 14024" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12505487..12506675) /note="source:INTACT224_F176_scaffold_8-int 2995 4181" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12512471..12514021) /note="source:CACAO_M_E24592_F195_scaffold_4 14 1326" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12513667..12514049 /note="source:CACAO_M_E24592_F195_scaffold_4 2504 2892" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12514041..12514080) /note="source:INTACT597_F267_scaffold_2-int 12159 12198" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12514080..12520058 /note="source:INTACT1421F_F389_scaffold_9-int 3405 9249" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12520957..12522396 /note="source:scaffold_3_CACTA_0382 10462 11898" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12527708..12538275 /note="source:INTACT99_F15_scaffold_5-int 1 10568" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12539992..12541394) /note="source:INTACT85_F9_scaffold_4-int 1 1445" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12545406..12546658 /note="source:INTACT189_F49_scaffold_5-int 631 1842" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12549328..12549413 /note="source:INTACT189_F49_scaffold_5-int 2475 2552" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12555324..12556268) /note="source:CACAO_M_E5899_F5_scaffold_2 21762 22689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12557572..12558107) /note="source:CACAO_M_E5326_F22_scaffold_2 19815 20354" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12564800..12564889) /note="source:INTACT93F_F345_scaffold_2-int 16869 16968" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12564835..12564895 /note="source:scaffold_3_CACTA_0382 1851 1912" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12565000..12565052 /note="source:CACAO_M_E59539_F98_scaffold_9 2040 2092" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12566057..12568718 /note="source:CACAO_M_S_E64023_F13_scaffold_5 13492 16148" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12568455..12570025) /note="source:CACAO_M_E13363_F273_scaffold_3 6801 8399" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12573059..12574239 /note="source:CACAO_M_E12297_F14_scaffold_3 9281 10462" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12582369..12584045) /note="source:CACAO_M_E57924_F323_scaffold_9 605 2282" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12584149..12584891 /note="source:CACAO_M_E589_F323_scaffold_1 2723 3465" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12585037..12585882) /note="source:INTACT669_F295_scaffold_3-int 7402 8247" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12585885..12586274) /note="source:CACAO_M_E11925_F316_scaffold_2 4220 4608" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12588408..12589441) /note="source:CACAO_M_E44088_F76_scaffold_5 4424 5475" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12588549..12589681 /note="source:CACAO_M_E234942_F88_scaffold_117 139 1260" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12589682..12592646 /note="source:CACAO_M_E35901_F7_scaffold_5 1 2932" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12592647..12594399) /note="source:CACAO_M_E29_F88_scaffold_1 3498 5243" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12592855..12596748) /note="source:CACAO_M_S_E119572_F76_scaffold_9 3 3992" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 12598360..12601737 /locus_tag="TCM_023287" /note="dbxref CacaoGD:Thecc1EG023287" mRNA join(12598360..12598721,12598857..12598918, 12600408..12600448,12601262..12601737) /locus_tag="TCM_023287" /product="PEBP (phosphatidylethanolamine-binding protein) family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s18680.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022560t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s07730.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13765t1" CDS join(12598524..12598721,12598857..12598918, 12600408..12600448,12601262..12601485) /locus_tag="TCM_023287" /note="paralog of Thecc1EG022560t1" /codon_start=1 /product="PEBP (phosphatidylethanolamine-binding protein) family protein" /protein_id="EOY08585.1" /db_xref="Phytozome:POPTR_0008s07730.1" /db_xref="TAIR:AT1G65480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q53MH8" /translation="MPRERDPLVVGRVIGDVLDPFTRSISLRVTFACREVNNGCELKP SQVVNQPRVDIGGDDLRTFYTLVMVDPDAPSPSDPNLREYLHWLVTDIPATTGASFGQ EVVCYESPRPTVGIHRFLFVLFRQLGRQTVYAPGWRQNFNTRDFAELYNLGLPVAAVY FNCQRESGSGGRRR" gene 12604990..12617304 /locus_tag="TCM_023288" /note="dbxref CacaoGD:Thecc1EG023288" mRNA join(12604990..12605201,12605972..12606579, 12607536..12607604,12607703..12607792,12607910..12608187, 12617279..12617304) /locus_tag="TCM_023288" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023347t1" /note="quality class is weak-utrpoor, express is weak, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.25 coverage" CDS join(12606568..12606579,12607536..12607604, 12607703..12607792,12607910..12608065) /locus_tag="TCM_023288" /note="paralog of Thecc1EG023347t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08586.1" /translation="MLLEVVMVVCLACDSCLLCDDDYDAGRDDGKMGWRFCPTCDSRL LCDDDYVRASKTMGDAVLWDIALDDDCDTVHGEIALDNDFYILLVALALGMIYFFVGW PLCVIY" mobile_element 12615050..12615998 /note="source:CACAO_M_E49857_F85_scaffold_7 4474 5436" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12615871..12616019) /note="source:CACAO_M_S_E5860_F197_scaffold_2 5581 5735" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12617273..12617411) /note="source:CACAO_M_E58324_F9_scaffold_9 23967 24095" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12617569..12618915) /note="source:CACAO_M_E45011_F7_scaffold_6 1640 2986" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12618916..12629779) /note="source:CACAO_M_S_E66372_F33_scaffold_5 1 10906" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12629780..12635181 /note="source:CACAO_M_E13157_F7_scaffold_3 1358 6725" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12635168..12637046 /note="source:CACAO_M_S_E64023_F13_scaffold_5 3027 4903" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12635378..12637921) /note="source:scaffold_9_CACTA_0931 15827 18338" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12637921..12639382 /note="source:CACAO_M_S_E31774_F7_scaffold_3 6280 7751" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12638578..12640068) /note="source:CACAO_M_E14312_F12_scaffold_3 16404 17450" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12640043..12640234 /note="source:CACAO_M_E52239_F256_scaffold_7 8341 8572" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12640062..12647145) /note="source:CACAO_M_S_E52921_F60_scaffold_5 9442 16529" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12647135..12647804 /note="source:INTACT186_F165_scaffold_12-int 4574 5244" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12647802..12648395 /note="source:scaffold_9_CACTA_0931 15844 16430" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12648440..12649101) /note="source:CACAO_M_S_E64023_F13_scaffold_5 4135 4804" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12649096..12649235 /note="source:CACAO_M_E11662_F12_scaffold_2 11638 11780" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12649884..12650302) /note="source:CACAO_M_S_E5046_F335_scaffold_1 15146 15564" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12651013..12651652) /note="source:INTACT1443F_F12_scaffold_9-int 418 1071" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12651645..12652561 /note="source:scaffold_9_CACTA_0931 5673 6589" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12652562..12653046) /note="source:CACAO_M_S_E64023_F13_scaffold_5 5251 5776" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12653439..12653827) /note="source:CACAO_M_S_E50960_F369_scaffold_4 1009 1395" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12655422..12656571) /note="source:INTACT1443F_F12_scaffold_9-int 5523 6680" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12656575..12660122) /note="source:INTACT1443F_F12_scaffold_9-int 1 3546" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12660128..12660373) /note="source:CACAO_M_S_E5046_F335_scaffold_1 3209 3454" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12662568..12663675) /note="source:CACAO_M_S_E5046_F335_scaffold_1 1509 2631" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12663676..12667328 /note="source:INTACT709_F15_scaffold_9-int 1 7303" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12667326..12674441 /note="source:INTACT709_F15_scaffold_9-int 3956 11066" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12676022..12676131) /note="source:CACAO_M_S_E5046_F335_scaffold_1 19107 19213" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12681138..12681992 /note="source:INTACT85_F9_scaffold_4-int 608 1446" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12683308..12686279 /note="source:CACAO_M_E1494_F15_scaffold_1 1 2971" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12686136..12686302) /note="source:INTACT257_F186_scaffold_6-int 9206 9376" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12688423..12689624 /note="source:CACAO_M_E42395_F3_scaffold_5 358 1581" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12690411..12692020 /note="source:CACAO_M_E84368_F4_scaffold_10 4512 6138" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12693382..12700855 /note="source:CACAO_M_E402_F87_scaffold_1 1 7253" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12700856..12700881) /note="source:CACAO_M_E24592_F195_scaffold_4 1236 1261" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12703266..12703489) /note="source:INTACT415F_F22_scaffold_4-int 5563 5785" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12703490..12704031 /note="source:CACAO_M_E23991_F4_scaffold_4 13955 14386" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12704033..12705377) /note="source:INTACT711_F307_scaffold_9-int 10869 12220" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12705264..12705897 /note="source:INTACT1625F_F66_scaffold_10-int 925 1564" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12705889..12716301) /note="source:CACAO_M_S_E122077_F328_scaffold_10 1203 8755" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12716304..12718273) /note="source:INTACT12_F107_scaffold_9-int 5845 7815" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12722849..12723514) /note="source:CACAO_M_E33282_F13_scaffold_4 11860 12521" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12723731..12723963 /note="source:INTACT312_F195_scaffold_2-int 2849 3047" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12723953..12726612) /note="source:INTACT506_F233_scaffold_3-int 7390 12421" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12724180..12726390 /note="source:CACAO_M_S_E19828_F19_scaffold_3 9155 11399" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12726638..12727579 /note="source:INTACT597_F267_scaffold_2-int 14298 15232" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12727672..12727715 /note="source:CACAO_M_E35511_F5_scaffold_5 4051 4094" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12727722..12729268) /note="source:INTACT506_F233_scaffold_3-int 4900 6446" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12729260..12733453 /note="source:INTACT224_F176_scaffold_8-int 8096 12269" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12733903..12734443 /note="source:INTACT189_F49_scaffold_5-int 14216 14755" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12734442..12736075) /note="source:INTACT224_F176_scaffold_8-int 12270 13904" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12736161..12736842 /note="source:CACAO_M_E33282_F13_scaffold_4 11860 12543" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12736824..12737792) /note="source:INTACT223_F175_scaffold_5-int 6208 7184" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12737745..12737803) /note="source:CACAO_M_S_E4534_F4_scaffold_1 2489 2547" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12737752..12737826 /note="source:CACAO_M_E35511_F5_scaffold_5 13614 13688" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12739836..12743311 /note="source:CACAO_M_E35942_F87_scaffold_5 1 4164" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12743312..12744238 /note="source:INTACT414F_F358_scaffold_4-int 4335 5266" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12744239..12746080 /note="source:CACAO_M_E35943_F4_scaffold_5 1 1842" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12746081..12746360) /note="source:scaffold_1_CACTA_0024 7599 8926" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12746361..12748155 /note="source:INTACT189_F49_scaffold_5-int 15786 17571" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12748156..12748360) /note="source:scaffold_1_CACTA_0024 6644 7598" /mobile_element_type="transposon:TIR/CACTA" mobile_element 12748223..12749246 /note="source:INTACT189_F49_scaffold_5-int 17550 18572" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12749488..12749550 /note="source:CACAO_M_S_E85177_F5_scaffold_7 163 225" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12754772..12757731 /note="source:CACAO_M_S_E53867_F143_scaffold_5 1 2960" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12758568..12758849) /note="source:scaffold_8_CACTA_0859 15426 15707" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12764532..12765338) /note="source:CACAO_M_E5899_F5_scaffold_2 21893 22689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12767883..12767978) /note="source:CACAO_M_E5899_F5_scaffold_2 21829 21925" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12770560..12781352 /note="source:CACAO_M_E35955_F15_scaffold_5 1 10793" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12781210..12781369) /note="source:CACAO_M_E22375_F15_scaffold_3 7871 8033" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12781353..12787862 /note="source:INTACT91_F141_scaffold_4-int 11 6502" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12787847..12787980) /note="source:CACAO_M_S_E144426_F33_scaffold_10 9961 10093" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12787863..12788783 /note="source:CACAO_M_S_E5046_F335_scaffold_1 4141 5062" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12788884..12790892 /note="source:INTACT213F_F15_scaffold_3-int 9000 11012" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12790893..12792116) /note="source:INTACT1263F_F42_scaffold_7-int 2430 3662" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12792217..12792556) /note="source:CACAO_M_S_E51090_F42_scaffold_4 2085 2424" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12792559..12795593 /note="source:CACAO_M_S_E53881_F15_scaffold_5 1 2969" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12795594..12795839) /note="source:CACAO_M_S_E66227_F42_scaffold_5 1781 2026" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12795834..12796585 /note="source:INTACT139F_F15_scaffold_2-int 7693 8443" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12802728..12803560) /note="source:CACAO_M_S_E4911_F76_scaffold_1 2972 3768" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12803524..12804298 /note="source:INTACT135F_F90_scaffold_2-int 6956 8734" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12804299..12805306) /note="source:CACAO_M_E12933_F42_scaffold_3 1 1007" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12807493..12808213 /note="source:INTACT774_F328_scaffold_5-int 3107 3546" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12809433..12812532 /note="source:CACAO_M_E35964_F51_scaffold_5 1 3100" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12814521..12814620) /note="source:CACAO_M_E65050_F7_scaffold_9 3409 3515" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12814757..12814805) /note="source:INTACT763_F7_scaffold_4-int 3250 3298" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12814796..12816717) /note="source:CACAO_M_E42395_F3_scaffold_5 15456 17487" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12816731..12819738) /note="source:CACAO_M_E13679_F324_scaffold_3 1 3011" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12819739..12819910 /note="source:CACAO_M_S_E65068_F306_scaffold_5 5934 6112" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12819893..12832846 /note="source:INTACT300_F7_scaffold_5-int 1 12954" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12832847..12832889 /note="source:INTACT161_F156_scaffold_5-int 2784 2811" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12833247..12835047) /note="source:CACAO_M_E14312_F12_scaffold_3 14833 16602" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12835044..12836009) /note="source:CACAO_M_E9677_F7_scaffold_2 6465 7432" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12836992..12837683 /note="source:CACAO_M_S_E4591_F5_scaffold_1 18937 19633" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12837770..12838092 /note="source:CACAO_M_S_E6875_F7_scaffold_2 6336 6647" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12838102..12838568 /note="source:CACAO_M_E42395_F3_scaffold_5 4080 4547" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12838551..12839694 /note="source:CACAO_M_E42395_F3_scaffold_5 17485 18615" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12842444..12843503 /note="source:CACAO_M_E69800_F12_scaffold_9 13540 14616" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12844001..12845261 /note="source:CACAO_M_S_E18399_F231_scaffold_3 7863 9136" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12846701..12846866) /note="source:CACAO_M_E58601_F7_scaffold_9 10751 10883" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12846867..12849847 /note="source:CACAO_M_S_E53909_F7_scaffold_5 1 2981" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12849848..12850714) /note="source:CACAO_M_E58601_F7_scaffold_9 9851 10755" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12851480..12853695 /note="source:scaffold_2_CACTA_0261 1779 3911" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12854037..12854113) /note="source:CACAO_M_E70891_F369_scaffold_10 16953 17029" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12856905..12857394) /note="source:CACAO_M_S_E2791_F7_scaffold_1 8538 9052" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12864155..12866992) /note="source:CACAO_M_E5000_F96_scaffold_2 1398 4234" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12867319..12868346 /note="source:CACAO_M_E12953_F322_scaffold_3 1259 2294" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12868144..12868986) /note="source:CACAO_M_E52012_F318_scaffold_7 6985 7827" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12868982..12875044 /note="source:INTACT506_F233_scaffold_3-int 3988 10104" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12875045..12875601) /note="source:CACAO_M_S_E85473_F233_scaffold_7 9349 9909" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(12875058..12882505) /locus_tag="TCM_023306" /note="dbxref CacaoGD:Thecc1EG023306" mRNA complement(join(12875058..12875079,12878135..12878216, 12879911..12880058,12882343..12882505)) /locus_tag="TCM_023306" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.44 coverage" mobile_element 12876358..12877496 /note="source:CACAO_M_S_E19828_F19_scaffold_3 11428 12570" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(12878172..12878216,12879911..12880058, 12882343..12882407)) /locus_tag="TCM_023306" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08587.1" /translation="MQISKEFGSSIPEQNQTSQGVRRKMGMINTKIIRFGLLLETVQM ENGHRGDQLKEKKRTRISGEVISCHCKANASVMVQDLSCDK" gene 12879937..12885005 /locus_tag="TCM_023307" /note="dbxref CacaoGD:Thecc1EG023307" mRNA join(12879937..12881108,12884981..12885005) /locus_tag="TCM_023307" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009123t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.90 coverage" CDS 12880569..12881000 /locus_tag="TCM_023307" /note="paralog of Thecc1EG009123t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08588.1" /translation="MYQGVYWLVCHQFFSNQANICYQKTYLLVTNSFSRITQAKNKNP YLSLPESPKPSFSSFLYFSFSFLSFLSPLFLSFFPFSFISFFSPFFQLISFIFFPRVW FSLQNKAFFFQMHGGKVKWCGSMKMALGGWKMKKKISFGWR" mobile_element 12880686..12880769 /note="source:CACAO_M_E5899_F5_scaffold_2 21762 21846" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12880896..12881659 /note="source:CACAO_M_E1841_F5_scaffold_1 15893 16662" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12881597..12881672) /note="source:CACAO_M_S_E85473_F233_scaffold_7 7220 7298" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12884943..12887577 /note="source:CACAO_M_S_E53927_F369_scaffold_5 1 2635" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12888835..12889183) /note="source:CACAO_M_E1841_F5_scaffold_1 14342 14693" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12894150..12895763 /note="source:CACAO_M_E24592_F195_scaffold_4 5356 6969" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12895764..12897480) /note="source:CACAO_M_S_E84376_F22_scaffold_6 17134 18843" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12897097..12897892 /note="source:INTACT424_F211_scaffold_12-int 7573 8381" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12900904..12902730) /note="source:INTACT753_F322_scaffold_5-int 2837 4663" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12908959..12909957 /note="source:CACAO_M_E9677_F7_scaffold_2 9865 10900" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12909956..12910645) /note="source:CACAO_M_E43725_F15_scaffold_5 2151 2840" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12910689..12911911 /note="source:CACAO_M_E10727_F15_scaffold_2 5974 7196" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12911912..12914862 /note="source:CACAO_M_E36024_F15_scaffold_5 1 2951" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12914863..12918154 /note="source:CACAO_M_S_E52921_F60_scaffold_5 13233 16526" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12918155..12920136 /note="source:CACAO_M_E9677_F7_scaffold_2 10895 12852" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12920138..12920206) /note="source:CACAO_M_E11098_F15_scaffold_2 7618 7688" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12923173..12924245) /note="source:INTACT406_F208_scaffold_3-int 117 1168" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12924867..12924929) /note="source:CACAO_M_E24592_F195_scaffold_4 2290 2361" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12924924..12925942 /note="source:INTACT293_F14_scaffold_5-int 9133 10141" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12925528..12927172) /note="source:INTACT609_F90_scaffold_2-int 4117 5812" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12931777..12933554 /note="source:INTACT1443F_F12_scaffold_9-int 8256 9943" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12933555..12933762) /note="source:INTACT146F_F14_scaffold_2-int 3568 3778" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12933578..12933724 /note="source:INTACT41F_F338_scaffold_1-int 2373 2534" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12933725..12933869 /note="source:INTACT563_F255_scaffold_10-int 3034 3179" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(12933758..12940649) /note="source:INTACT676_F297_scaffold_3-int 907 7776" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12933870..12939706 /note="source:INTACT41F_F338_scaffold_1-int 2535 9012" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12950251..12964328 /note="source:CACAO_M_E36038_F90_scaffold_5 1 14078" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 12965698..12968629 /note="source:scaffold_2_CACTA_0261 3894 6848" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(12971289..12974465) /note="source:INTACT39F_F22_scaffold_1-int 4189 7434" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12974520..12975203) /note="source:INTACT39F_F22_scaffold_1-int 3567 4243" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12975701..12976962) /note="source:INTACT126_F14_scaffold_3-int 6749 8011" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12976965..12980266 /note="source:CACAO_M_E36044_F82_scaffold_5 1 3302" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12980267..12981961 /note="source:INTACT95_F143_scaffold_9-int 8598 10294" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12981962..12982242) /note="source:CACAO_M_S_E5046_F335_scaffold_1 17295 17674" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12982281..12982721 /note="source:CACAO_M_E59744_F15_scaffold_9 7591 8032" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12982822..12984526 /note="source:INTACT66F_F95_scaffold_2-int 474 2177" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12986322..12987588) /note="source:INTACT218_F33_scaffold_9-int 9313 10457" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12987424..12987716 /note="source:CACAO_M_E44265_F33_scaffold_5 1440 1732" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12987717..12990623 /note="source:CACAO_M_E36049_F86_scaffold_5 1 2907" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12990625..12996315) /note="source:INTACT209_F33_scaffold_5-int 2224 7898" /mobile_element_type="retrotransposon:LTR/Gypsy" gene <12993046..>12993216 /locus_tag="TCM_023320" /note="dbxref CacaoGD:Thecc1EG023320" mRNA <12993046..>12993216 /locus_tag="TCM_023320" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:frave:gene02979.5" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003582t1" /note="quality class is strongpartial-expresste, express is strong, homology is paralog strong, intron is none, protein is partial; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4096t1" CDS <12993047..>12993214 /locus_tag="TCM_023320" /note="paralog of Thecc1EG003582t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08589.1" /translation="AVFMDLMNRVFHPYLDKFVIVFIDDILVYSKNDDEHAVHLRIML QTLRERQLYAKF" mobile_element complement(12996416..12997326) /note="source:INTACT209_F33_scaffold_5-int 1313 2222" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12997303..12997484 /note="source:CACAO_M_S_E86138_F33_scaffold_7 2782 2962" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 12997485..12999037 /note="source:CACAO_M_S_E86138_F33_scaffold_7 1408 2962" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(12999848..13000277) /note="source:INTACT781_F89_scaffold_5-int 4787 5220" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13000971..13003716) /note="source:CACAO_M_E24729_F87_scaffold_4 4569 7330" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13003791..13006518 /note="source:INTACT203_F15_scaffold_6-int 1 2765" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13006505..13008208 /note="source:CACAO_M_E13038_F22_scaffold_3 10683 12351" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13008309..13010415 /note="source:CACAO_M_E13038_F22_scaffold_3 12388 14386" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13011404..13012001 /note="source:scaffold_5_CACTA_0591 7191 7780" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13012026..13012611) /note="source:CACAO_M_S_E5046_F335_scaffold_1 17555 18135" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13014399..13015270 /note="source:CACAO_M_E13038_F22_scaffold_3 16468 17338" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13015271..13016672 /note="source:INTACT95_F143_scaffold_9-int 4422 5817" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13016673..13019616 /note="source:CACAO_M_S_E54000_F7_scaffold_5 1 2944" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13019617..13021210 /note="source:INTACT95_F143_scaffold_9-int 5813 7407" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13021207..13021680 /note="source:CACAO_M_E13038_F22_scaffold_3 17332 17809" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13021671..13022899) /note="source:CACAO_M_E58324_F9_scaffold_9 9033 10221" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13023842..13027653 /note="source:CACAO_M_S_E54003_F277_scaffold_5 1 3004" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13028027..13029237) /note="source:CACAO_M_E58324_F9_scaffold_9 9049 10228" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13029237..13029921 /note="source:CACAO_M_S_E5046_F335_scaffold_1 19759 20449" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13029357..13029932 /note="source:scaffold_5_CACTA_0591 14462 15039" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13029961..13030124) /note="source:CACAO_M_E35176_F7_scaffold_5 4534 4717" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13030120..13030738 /note="source:CACAO_M_S_E4863_F51_scaffold_1 12296 12924" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13030843..13031132) /note="source:CACAO_M_E10019_F324_scaffold_2 1 289" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13031439..13031555) /note="source:CACAO_M_E58324_F9_scaffold_9 7654 7773" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13031545..13031809 /note="source:CACAO_M_E13038_F22_scaffold_3 129 392" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13031808..13033869 /note="source:CACAO_M_E13038_F22_scaffold_3 16667 18740" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13035093..13035405 /note="source:scaffold_4_CACTA_0493 3973 4277" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13037569..13038189 /note="source:INTACT88_F12_scaffold_4-int 10280 10888" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13039482..13039789) /note="source:CACAO_M_S_E99574_F14_scaffold_9 21574 21887" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13044149..13044538) /note="source:CACAO_M_E14347_F12_scaffold_3 11448 11837" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(13044289..13048463) /locus_tag="TCM_023328" /note="dbxref CacaoGD:Thecc1EG023328" mRNA complement(join(13044289..13044363,13044477..13045444, 13048417..13048463)) /locus_tag="TCM_023328" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400057828" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003150t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.39 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc2Loc3914t11_G3" CDS complement(join(13044318..13044363,13044477..13045438)) /locus_tag="TCM_023328" /note="paralog of Thecc1EG003150t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLE9" /translation="MPPKTRAASRRAREQDVPIEMADRPRASTQRGRGRRCRVTRPVG LDTPVSRQEEGQSSSDVDRHPARGITIEDLAAGLQGVNRVVEMMATRMEDIQRVVEGR PTVQESPSSQGQADHQHHEEERGHLDISLPDFLKLKPPTFSGSDASEKPQVFLDKMEK ICKALGCSSVRSVELAAFQLEDVAQEWYSSLCRGRLTNATPLAWSEFSVAFLDRFLPL SVRNARAREFETLVQTSSMTVSEYDIKFTQLARYAPYLVSTEEMKIQRXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXDDLFDQLQGAQCFSKIDLRSGLYGFDEPSVQTLF G" mobile_element complement(13044639..13045517) /note="source:CACAO_M_E14347_F12_scaffold_3 9685 10563" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13047960..13048314) /note="source:CACAO_M_E23877_F12_scaffold_4 1856 2210" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13048313..13049729 /note="source:INTACT242_F12_scaffold_1-int 3135 4548" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13053624..13053982) /note="source:CACAO_M_E58601_F7_scaffold_9 10516 10875" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13053983..13056964 /note="source:CACAO_M_E36071_F7_scaffold_5 1 2982" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13057287..13057791) /note="source:CACAO_M_E58601_F7_scaffold_9 9800 10270" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13057792..13067439 /note="source:INTACT291_F12_scaffold_5-int 1 9648" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13068683..13070255) /note="source:CACAO_M_E14347_F12_scaffold_3 12530 14103" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13070254..13070296 /note="source:CACAO_M_E3248_F5_scaffold_1 6176 6218" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13070296..13070616) /note="source:scaffold_2_CACTA_0260 26 345" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13070753..13071703) /note="source:CACAO_M_S_E31635_F14_scaffold_3 3264 4188" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13070907..13072003) /note="source:scaffold_2_CACTA_0261 2818 3886" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13071906..13072030 /note="source:CACAO_M_E3248_F5_scaffold_1 17637 17765" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13072928..13073927) /note="source:CACAO_M_E14347_F12_scaffold_3 11535 12535" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13073976..13074349) /note="source:INTACT570_F260_scaffold_5-int 2846 3220" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13074350..13077161 /note="source:CACAO_M_S_E38130_F233_scaffold_4 1 2788" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13077162..13077466) /note="source:INTACT570_F260_scaffold_5-int 11141 11445" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13077460..13077588 /note="source:INTACT265_F12_scaffold_7-int 7170 7300" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13077466..13077572) /note="source:CACAO_M_S_E64832_F14_scaffold_5 4205 4310" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13080118..13082687) /note="source:INTACT570_F260_scaffold_5-int 8577 11145" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13085308..13086713) /note="source:CACAO_M_E58601_F7_scaffold_9 9544 10874" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13088421..13088479 /note="source:scaffold_2_CACTA_0260 3979 4037" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13088520..13091172 /note="source:CACAO_M_E36084_F369_scaffold_5 1 2653" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13092723..13094500) /note="source:CACAO_M_S_E64832_F14_scaffold_5 10030 11884" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13094603..13096412) /note="source:CACAO_M_S_E5046_F335_scaffold_1 16174 17991" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13096419..13099148 /note="source:CACAO_M_E36086_F98_scaffold_5 1 2730" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13099152..13100021) /note="source:CACAO_M_S_E5046_F335_scaffold_1 15303 16169" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13100056..13103438) /note="source:INTACT338_F201_scaffold_2-int 3576 6965" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13102975..13103493 /note="source:INTACT1777F_F98_scaffold_10-int 2276 2795" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13103490..13105411 /note="source:CACAO_M_S_E38262_F319_scaffold_4 13485 15415" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13105407..13105931) /note="source:CACAO_M_E59305_F201_scaffold_9 440 964" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13105934..13107148) /note="source:CACAO_M_S_E5046_F335_scaffold_1 2791 4022" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13107847..13108642 /note="source:CACAO_M_E1841_F5_scaffold_1 3981 4748" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13109332..13109806 /note="source:INTACT280_F60_scaffold_5-int 13870 14336" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13109795..13109961) /note="source:CACAO_M_S_E5046_F335_scaffold_1 2629 2795" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(13109875..13115704) /locus_tag="TCM_023336" /note="dbxref CacaoGD:Thecc1EG023336" mRNA complement(join(13109875..13109906,13112891..13113333, 13113608..13113699,13115624..13115704)) /locus_tag="TCM_023336" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" mobile_element 13109961..13111198 /note="source:CACAO_M_E1841_F5_scaffold_1 9673 10938" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13111592..13112393 /note="source:CACAO_M_E1841_F5_scaffold_1 14357 15168" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(13113273..13113333,13113608..13113699, 13115624..13115674)) /locus_tag="TCM_023336" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08591.1" /translation="MHMDLSYMNSLRCKLSKMTHPFLYHVQINRPLANAWQGLSIDID FGIRFEVLKLTLVSQASLARLEC" mobile_element complement(13116915..13117039) /note="source:CACAO_M_E11098_F15_scaffold_2 8923 8987" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13117931..13118798 /note="source:INTACT649F_F368_scaffold_5-int 1 873" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13118783..13120011 /note="source:INTACT649F_F368_scaffold_5-int 775 2000" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13120964..13121007) /note="source:CACAO_M_E51760_F96_scaffold_7 749 792" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13122126..13122899 /note="source:INTACT280_F60_scaffold_5-int 14935 15516" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13123734..13124457 /note="source:CACAO_M_E58819_F24_scaffold_9 15190 15976" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13124458..13127764 /note="source:CACAO_M_E36095_F85_scaffold_5 1 3307" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13127766..13128087 /note="source:CACAO_M_E58819_F24_scaffold_9 15973 16298" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13128961..13129678) /note="source:CACAO_M_E11098_F15_scaffold_2 7991 8805" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13129730..13129937) /note="source:CACAO_M_E11098_F15_scaffold_2 7790 7999" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13132393..13132985) /note="source:CACAO_M_E9677_F7_scaffold_2 731 1320" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13134589..13135470) /note="source:CACAO_M_E11098_F15_scaffold_2 6238 7091" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13136244..13136812 /note="source:CACAO_M_E1841_F5_scaffold_1 4183 4748" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13137262..13137554 /note="source:INTACT280_F60_scaffold_5-int 14015 14307" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 13137319..13159493 /locus_tag="TCM_023339" /note="dbxref CacaoGD:Thecc1EG023339" mRNA join(13137319..13137334,13138836..13139353, 13145369..13145454,13159467..13159493) /locus_tag="TCM_023339" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022937t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(13139075..13139353,13145369..13145431) /locus_tag="TCM_023339" /note="paralog of Thecc1EG022937t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08592.1" /translation="MNMRQLNVKVMHTLHCTLDDNDYKRVSKCESAKEIWKKLEELYR ETKKEKELEEKLYESQCSTCAKAIRDEESIEIQSSIQFESWLMALKELKEESLPIKAR KSYPTNSDRGT" mobile_element 13141524..13143951 /note="source:INTACT1776F_F322_scaffold_10-int 2105 4495" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13143956..13146688 /note="source:CACAO_M_S_E54046_F15_scaffold_5 1 2733" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13146689..13148010) /note="source:CACAO_M_E5378_F96_scaffold_2 4538 5862" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13147989..13148108 /note="source:CACAO_M_E24592_F195_scaffold_4 7151 7250" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13149739..13151044) /note="source:INTACT649F_F368_scaffold_5-int 772 2008" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13151045..13170528 /note="source:INTACT280_F60_scaffold_5-int 1 19484" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13170529..13170975 /note="source:CACAO_M_E14113_F106_scaffold_3 19981 20431" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13171035..13173192 /note="source:INTACT172_F47_scaffold_2-int 1620 3843" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13173288..13173353 /note="source:CACAO_M_S_E109853_F60_scaffold_9 4865 4922" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13173466..13173516 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3204 3254" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13173517..13173530) /note="source:CACAO_M_E14113_F106_scaffold_3 13797 13861" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13173748..13173898) /note="source:CACAO_M_S_E31635_F14_scaffold_3 16801 16936" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13176511..13178638 /note="source:INTACT172_F47_scaffold_2-int 3838 6011" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13178639..13179369) /note="source:CACAO_M_E14113_F106_scaffold_3 4877 5601" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13180218..13185218) /note="source:INTACT213F_F15_scaffold_3-int 4052 9075" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13185217..13185466) /note="source:CACAO_M_E9677_F7_scaffold_2 3080 3329" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13185772..13186278) /note="source:CACAO_M_E1841_F5_scaffold_1 16134 16664" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13186279..13189277 /note="source:CACAO_M_S_E54060_F7_scaffold_5 1 2999" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13189278..13189636) /note="source:CACAO_M_E1841_F5_scaffold_1 15779 16138" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13189634..13190458) /note="source:CACAO_M_E52239_F256_scaffold_7 5622 6441" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13190457..13190503) /note="source:CACAO_M_E58324_F9_scaffold_9 23310 23356" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13190502..13192304) /note="source:CACAO_M_E58324_F9_scaffold_9 21583 23356" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13192312..13193680) /note="source:INTACT280_F60_scaffold_5-int 9241 10486" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13194558..13195553 /note="source:CACAO_M_S_E7818_F60_scaffold_2 6125 7120" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13195901..13199355 /note="source:CACAO_M_E14113_F106_scaffold_3 17073 20431" /mobile_element_type="retrotransposon:LTR/Copia" gene 13195949..13211618 /locus_tag="TCM_023347" /note="dbxref CacaoGD:Thecc1EG023347" mRNA join(13195949..13195987,13207699..13207786, 13207899..13207967,13208085..13208362,13211552..13211618) /locus_tag="TCM_023347" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023288t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" gene 13195952..13213196 /locus_tag="TCM_023348" /note="dbxref CacaoGD:Thecc1EG023348" mRNA join(13195952..13195963,13201485..13202292, 13212984..13213196) /locus_tag="TCM_023348" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.29 coverage" mobile_element 13199418..13199775 /note="source:INTACT172_F47_scaffold_2-int 1623 1976" /mobile_element_type="retrotransposon:LTR/Copia" CDS 13201987..13202277 /locus_tag="TCM_023348" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08594.1" /translation="METVVQDQLLSTRRIPFFPEDDKNSLSPQSAHFRETYVTETLFV PLHVSLLTFGNIRSKARMEKLTTIIYMYMYNPLPDSEYFQNHFKIRALVGQL" CDS join(13207757..13207786,13207899..13207967, 13208085..13208240) /locus_tag="TCM_023347" /note="paralog of Thecc1EG023288t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08593.1" /translation="MMIMMPAGLVRFCPTCDSRLLRDDDYVCASKTMGDAVLWDIALD EDCDAVHGEIALDNDFYILLVALALGMIYFFVGWPLCVIY" mobile_element 13208763..13209693 /note="source:CACAO_M_E52239_F256_scaffold_7 3821 4770" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13209878..13216259) /note="source:INTACT363_F7_scaffold_9-int 3569 9921" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13216259..13225363 /note="source:CACAO_M_E52239_F256_scaffold_7 8359 17467" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13224392..13226909) /note="source:CACAO_M_E36294_F51_scaffold_5 3693 6212" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13226813..13226922 /note="source:CACAO_M_E45017_F15_scaffold_6 2198 2310" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13226911..13227281) /note="source:INTACT302_F7_scaffold_7-int 6231 6601" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13227282..13227968 /note="source:CACAO_M_S_E6619_F15_scaffold_2 4 689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13227967..13232988) /note="source:INTACT302_F7_scaffold_7-int 1 5191" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13236012..13236944 /note="source:CACAO_M_S_E32752_F12_scaffold_4 2468 3406" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13237045..13238789 /note="source:CACAO_M_S_E99574_F14_scaffold_9 8448 10193" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13239267..13243824 /note="source:CACAO_M_S_E119877_F5_scaffold_10 1 4548" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13243823..13244306 /note="source:CACAO_M_E3248_F5_scaffold_1 1651 2135" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13244306..13245337 /note="source:INTACT563_F255_scaffold_10-int 5232 6245" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13245237..13245351 /note="source:CACAO_M_S_E6027_F12_scaffold_2 7544 7657" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13245450..13246271) /note="source:INTACT504_F7_scaffold_1-int 3037 3835" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13245640..13246419 /note="source:INTACT563_F255_scaffold_10-int 16521 17296" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13246404..13247848) /note="source:scaffold_4_CACTA_0494 2560 3980" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13248848..13249643 /note="source:CACAO_M_E43348_F5_scaffold_5 7012 7809" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13252249..13252445 /note="source:CACAO_M_E59541_F5_scaffold_9 5325 5520" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13252432..13252618) /note="source:CACAO_M_E13220_F12_scaffold_3 12246 12419" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13252623..13255422 /note="source:CACAO_M_E36134_F87_scaffold_5 1 2800" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13256739..13257476) /note="source:INTACT1443F_F12_scaffold_9-int 8246 8976" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13257461..13258407 /note="source:CACAO_M_S_E119877_F5_scaffold_10 5517 6462" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13258408..13265273 /note="source:CACAO_M_S_E5210_F12_scaffold_1 1 6873" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13265274..13268117) /note="source:CACAO_M_S_E64440_F7_scaffold_5 16984 19766" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13268105..13268116) /note="source:CACAO_Mariner_E229_scaffold_9 15206 15217" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 13268117..13270413 /note="source:CACAO_M_E227789_F230_scaffold_56 1 2288" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13269982..13271129) /note="source:CACAO_M_E23109_F230_scaffold_4 1 1145" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13271130..13271305) /note="source:INTACT135F_F90_scaffold_2-int 9648 9824" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13271298..13271758) /note="source:INTACT88_F12_scaffold_4-int 5744 6200" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13273945..13274005) /note="source:CACAO_M_S_E4863_F51_scaffold_1 4347 4406" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13275236..13276304 /note="source:CACAO_M_E35176_F7_scaffold_5 14559 15628" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13276266..13276304) /note="source:INTACT488_F227_scaffold_9-int 6929 6975" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13276305..13279239 /note="source:CACAO_M_E36147_F281_scaffold_5 1 2935" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13279240..13280682) /note="source:INTACT135F_F90_scaffold_2-int 10143 11580" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13280683..13283557 /note="source:CACAO_M_S_E54106_F230_scaffold_5 1 2875" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13283463..13283570) /note="source:CACAO_M_S_E15347_F33_scaffold_2 5792 5900" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13283557..13284063 /note="source:CACAO_M_E35176_F7_scaffold_5 2438 2943" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13284051..13285170) /note="source:CACAO_M_S_E5046_F335_scaffold_1 1680 2815" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13284235..13286594 /note="source:INTACT146F_F14_scaffold_2-int 3170 5726" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13286592..13291174 /note="source:CACAO_M_S_E16386_F9_scaffold_2 4257 8862" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13291175..13291238 /note="source:CACAO_M_S_E52921_F60_scaffold_5 921 984" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13291251..13299032 /note="source:CACAO_M_E69228_F89_scaffold_9 1 7766" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13295037..13300575) /note="source:CACAO_M_S_E145698_F277_scaffold_11 5858 13118" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13303747..13306091) /note="source:CACAO_M_S_E145698_F277_scaffold_11 2408 4773" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13308601..13308919) /note="source:CACAO_M_E69760_F9_scaffold_9 2853 3163" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13308881..13309375 /note="source:CACAO_M_E40875_F277_scaffold_5 584 1079" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13310524..13311687 /note="source:CACAO_M_E44709_F9_scaffold_6 13175 14327" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13313025..13313468 /note="source:CACAO_M_E14428_F42_scaffold_3 2562 3007" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13313118..13313477) /note="source:CACAO_M_E49857_F85_scaffold_7 441 822" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13313723..13313918) /note="source:CACAO_M_E49857_F85_scaffold_7 20685 20880" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13313919..13315187) /note="source:CACAO_M_E85348_F277_scaffold_11 642 1933" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13315188..13318271 /note="source:CACAO_M_E36168_F141_scaffold_5 1 3084" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13318272..13318914) /note="source:CACAO_M_E34546_F277_scaffold_5 1 644" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13318914..13319600 /note="source:CACAO_M_S_E52921_F60_scaffold_5 18952 19639" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13318915..13318954) /note="source:scaffold_4_CACTA_0498 7527 7563" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13321086..13324253 /note="source:INTACT591_F264_scaffold_1-int 455 3716" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13324756..13325515 /note="source:INTACT591_F264_scaffold_1-int 5685 6429" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13325511..13326226 /note="source:INTACT591_F264_scaffold_1-int 18867 19595" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13333974..13334379 /note="source:CACAO_M_E23144_F272_scaffold_4 8071 8508" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13334052..13335039 /note="source:CACAO_M_E3248_F5_scaffold_1 1651 2635" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13335675..13336089 /note="source:INTACT242_F12_scaffold_1-int 3295 3692" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(13336700..13350696) /locus_tag="TCM_023358" /note="dbxref CacaoGD:Thecc1EG023358" mRNA complement(join(13336700..13337957,13339846..13339920, 13350534..13350696)) /locus_tag="TCM_023358" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028631t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(13337104..13337685) /locus_tag="TCM_023358" /note="paralog of Thecc1EG028631t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08595.1" /translation="MNLVLFVVAILDQRKKLSYVEFTLLEMYPCIQASMMFSLVTKTM DELFHYYRNMLQLLSHVGESGQEYPTSIGQGTSGGCRDSVASTLIGKDSKCTKKRLDR FKNHRLNTRSKVLKTELEKYVFKHVDDEGFDDDEFDVLMWWKFNQFRFLVLVAIACDV LAILVSTVASESIFNTNGHVLDAYRSSLTLKVM" mobile_element complement(13338352..13339944) /note="source:CACAO_M_E35674_F13_scaffold_5 7372 9210" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13341235..13341971) /note="source:CACAO_M_E5899_F5_scaffold_2 9752 10502" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13342957..13343023) /note="source:INTACT563_F255_scaffold_10-int 5066 5132" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13343245..13348936 /note="source:CACAO_M_E12395_F172_scaffold_3 1 2850" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13348926..13349028) /note="source:INTACT170_F12_scaffold_5-int 6732 6840" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13348938..13349642) /note="source:INTACT405F_F91_scaffold_4-int 6898 7603" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13349017..13352154 /note="source:CACAO_M_E10476_F82_scaffold_2 175 3333" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13352155..13352254 /note="source:CACAO_M_E35811_F12_scaffold_5 7797 7896" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13352258..13355947 /note="source:CACAO_M_E33213_F12_scaffold_4 2847 6543" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13355949..13361642 /note="source:INTACT294_F12_scaffold_9-int 4615 10269" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13361643..13366332 /note="source:CACAO_M_E65173_F256_scaffold_9 5328 10103" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13366333..13366509) /note="source:CACAO_M_E5899_F5_scaffold_2 8956 9132" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13366333..13366364) /note="source:CACAO_M_E42514_F40_scaffold_5 14412 14438" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13366939..13366999) /note="source:CACAO_M_E5899_F5_scaffold_2 8903 8963" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13367038..13368272 /note="source:CACAO_M_E9571_F13_scaffold_2 8668 9901" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13368412..13368582) /note="source:CACAO_M_E35674_F13_scaffold_5 9039 9210" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13368584..13371416 /note="source:CACAO_M_E36184_F15_scaffold_5 1 2833" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13371417..13372230) /note="source:CACAO_M_E35674_F13_scaffold_5 8233 9042" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13372845..13373592 /note="source:INTACT120_F22_scaffold_3-int 8764 9501" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13373602..13383449 /note="source:CACAO_M_E36185_F9_scaffold_5 1 9848" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13383550..13386666 /note="source:CACAO_M_E36185_F9_scaffold_5 9849 12965" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13386814..13387130 /note="source:CACAO_M_S_E85005_F42_scaffold_7 1 317" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13387131..13389887 /note="source:CACAO_M_S_E54143_F15_scaffold_5 1 2757" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13389778..13389901) /note="source:CACAO_M_E52239_F256_scaffold_7 8343 8469" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13389888..13392646 /note="source:CACAO_M_S_E7213_F42_scaffold_2 314 3091" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13393287..13396006 /note="source:CACAO_M_E36189_F73_scaffold_5 1 2720" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13396926..13398000) /note="source:CACAO_M_S_E119615_F3_scaffold_9 13586 14676" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13405875..13406033) /note="source:CACAO_M_E52239_F256_scaffold_7 6311 6470" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13406953..13408533 /note="source:scaffold_4_CACTA_0493 44 1623" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13410499..13410644 /note="source:INTACT19F_F94_scaffold_1-int 15742 15872" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13411901..13412024 /note="source:INTACT19F_F94_scaffold_1-int 14301 14425" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13413347..13413668) /note="source:CACAO_M_E618_F42_scaffold_1 2475 2796" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13416411..13417829 /note="source:CACAO_M_E44899_F328_scaffold_6 1 1496" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13417822..13417962 /note="source:CACAO_M_E11662_F12_scaffold_2 6610 6752" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13419636..13419995) /note="source:CACAO_M_E49857_F85_scaffold_7 20691 21045" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13420367..13420945 /note="source:INTACT1818F_F49_scaffold_11-int 128 708" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13421615..13422540 /note="source:CACAO_M_E12782_F33_scaffold_3 1 926" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13428641..13429051 /note="source:CACAO_M_E44709_F9_scaffold_6 14602 15011" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13429050..13429182 /note="source:scaffold_4_CACTA_0493 4306 4440" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13429333..13429742 /note="source:CACAO_M_E36185_F9_scaffold_5 7753 8161" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13429843..13429995) /note="source:CACAO_M_E32838_F42_scaffold_4 2347 2498" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13429998..13431360 /note="source:CACAO_M_E48598_F33_scaffold_6 1 1358" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13438105..13438350 /note="source:CACAO_M_E36185_F9_scaffold_5 10548 10793" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13439825..13440003) /note="source:INTACT599_F268_scaffold_9-int 1951 2117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13440058..13440552 /note="source:INTACT143_F152_scaffold_7-int 5317 5805" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13440553..13443170 /note="source:CACAO_M_E23048_F42_scaffold_4 1 2628" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13443271..13443736 /note="source:CACAO_M_S_E13904_F42_scaffold_2 2629 3097" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13443754..13445923 /note="source:CACAO_M_S_E65716_F44_scaffold_5 7630 9808" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13446019..13446162) /note="source:CACAO_M_E42395_F3_scaffold_5 1634 1777" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13446163..13447396) /note="source:INTACT741_F17_scaffold_3-int 8412 9663" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13447415..13453949) /note="source:INTACT528_F17_scaffold_6-int 484 7140" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13454040..13454555) /note="source:INTACT528_F17_scaffold_6-int 6354 6871" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13454543..13456112) /note="source:CACAO_M_E42395_F3_scaffold_5 19119 20737" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 13456864..13466148 /locus_tag="TCM_023366" /note="dbxref CacaoGD:Thecc1EG023366" mRNA join(13456864..13457800,13457905..13458004, 13459739..13459886,13459963..13460086,13460294..13460655, 13460745..13461056,13463127..13463208,13463277..13463414, 13463527..13463940,13464065..13464202,13464866..13464911, 13465002..13465746,13466014..13466148) /locus_tag="TCM_023366" /product="Chromatin assembly factor 1 subunit A, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s07740.1" /inference="similar to AA sequence:ricco:29929.m004516" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04246t00001" CDS join(13457318..13457800,13457905..13458004, 13459739..13459886,13459963..13460086,13460294..13460655, 13460745..13461056,13463127..13463208,13463277..13463414, 13463527..13463940,13464065..13464202,13464866..13464911, 13465002..13465165) /locus_tag="TCM_023366" /note="dbxref ricco:29929.m004516" /codon_start=1 /product="Chromatin assembly factor 1 subunit A, putative" /protein_id="EOY08596.1" /db_xref="TAIR:AT1G65470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SXY0" /translation="MADSATVIDVDDHPKVPKTDSQDQPKRTGKRKRASWVSETLSDE QREAQIKELYQEMDGLYGYYKEVMEQKSGFGMGFGLGLVESGPLNSVVAVLMEESDLP LSRLVEAIHEKVKDSMGNVSLAAVKSAVLFVGQRVKYGLGSEDADILEDDANSSLWCW ETRDVKLMPKSVRATLKIRRTCRKKINERFTAVSAMITLLQKWENDQNYKHDFMKASE KLLKVLSEAEIRLLMSNMLQKSGAEMAEKEAKREEKLLIKQFERNRREIEKEKKKVDR ELQKEKLQNEKERKRLQEEVEKDERRREREEAEMRKQLRKQQEEVERDQRRREKEEAE LKKQLSIQKQASLMERFLKKCKTSPRQIEQLTKPATFCPSTQKSEKVPEAVTLLMDTT LSSKGETYMDDLRKLHLSSWRHLGHFLRSNQKQCWGMRRKPKTELFKELKLTANKGSS HDELSVERIIDGWGEENSDDRSCFNPDISAADVKCCGRKQLLQFDKSYRPAFFGIWPK KSNVVGPRCPLRKDPDLDYDVDSDEEWEEEEPGESLSDCDKDEEEESFEGCSKADDED ESEDGFFVPDGYLSENEGVQVDGTGTDVALEETKSSPMSEQDGQNEEFYTFLRQQKYL NSLTEHALQKNQPLIILNISHEKTSVLMAEDLTNTCKLELTCLQALSMRACPDGSPVE ISVDSIADDNQEACLSSSKASTTPVLTVAPILDSDMPLIVSTIQSCSLGINRLVESLQ QKFPSIPKSQLKTKVREISEFSDNRWQVKKEILQKLGIPISPEKGGGRTKTIAAFFSK RCLPPSDKSISPIDTSPQQLLKPSSAAQEQQSYTYNHT" gene complement(13466151..13471369) /locus_tag="TCM_023367" /note="dbxref CacaoGD:Thecc1EG023367" mRNA complement(join(13466151..13467158,13467551..13467706, 13471196..13471369)) /locus_tag="TCM_023367" /product="Uncharacterized protein" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.20 coverage" gene complement(13466151..13471079) /locus_tag="TCM_023368" /note="dbxref CacaoGD:Thecc1EG023368" mRNA complement(join(13466151..13466185,13470346..13470806, 13470924..13471079)) /locus_tag="TCM_023368" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete" mobile_element 13466468..13466532 /note="source:INTACT65_F13_scaffold_1-int 301 370" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(13467009..13467158,13467551..13467703)) /locus_tag="TCM_023367" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08597.1" /translation="MAFDVTRPISIKMLCFSLQRDSLGFECNAFILMKILTTFRSEIG KVVNIKVIRRQLEPRLRCPRSFVSLVGILAFRSHTFTLVTPLEARVIFVCKYVHVM" mobile_element 13468976..13469379 /note="source:scaffold_2_CACTA_0261 6849 7252" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13469951..13470050) /note="source:CACAO_M_E48538_F49_scaffold_6 12213 12313" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13470284..13470389 /note="source:CACAO_M_E48538_F49_scaffold_6 12214 12311" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(13470581..13470806,13470924..13470961)) /locus_tag="TCM_023368" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08598.1" /translation="MVGKSLELLGMIRNKLLNGNVDPRSFQCPSCILPWDQTLRHGMS ILGYYPGSFSVDPYSLNYAKMLPFEPILVPNTLTFQKLMHGDF" mobile_element 13471303..13471356 /note="source:INTACT537_F22_scaffold_2-int 734 790" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13471334..13471453) /note="source:scaffold_6_CACTA_0702 12120 12237" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13475148..13475286) /note="source:scaffold_6_CACTA_0702 3349 3483" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13475784..13475842) /note="source:CACAO_M_E48538_F49_scaffold_6 12213 12271" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13478851..13482009 /note="source:INTACT1373F_F385_scaffold_8-int 6166 9372" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13482006..13482178 /note="source:INTACT41F_F338_scaffold_1-int 5511 5683" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13482179..13492505 /note="source:CACAO_M_E35188_F7_scaffold_5 1 8917" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13492506..13492948 /note="source:INTACT41F_F338_scaffold_1-int 5679 6122" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 13492687..13493804 /locus_tag="TCM_023371" /note="dbxref CacaoGD:Thecc1EG023371" mRNA 13492687..13493804 /locus_tag="TCM_023371" /product="CCHC-type integrase" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023001t1" /note="quality class is medium-utrpoor, express is medium, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.40 coverage" CDS 13492698..13492958 /locus_tag="TCM_023371" /note="paralog of Thecc1EG023001t1" /codon_start=1 /product="CCHC-type integrase" /protein_id="EOY08599.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0ZCC5" /translation="MELLKDYYCTILYHPGKANMVADALSQKLMGSLAHISMDKRSLI REMHSLGDMGVHLEVSEANALLVHFRVRPILMDRIKEAQRST" mobile_element 13492940..13492989 /note="source:INTACT807_F54_scaffold_3-int 10808 10862" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13492949..13493084) /note="source:INTACT551_F248_scaffold_7-int 11582 11716" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13493067..13493235) /note="source:CACAO_M_E4704_F345_scaffold_2 1 167" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13494962..13495716 /note="source:CACAO_M_S_E7818_F60_scaffold_2 5125 5903" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13496137..13499396) /note="source:INTACT1421F_F389_scaffold_9-int 5757 8989" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13499396..13500760 /note="source:CACAO_M_E58148_F12_scaffold_9 8542 9723" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13500725..13501476) /note="source:CACAO_M_E69460_F12_scaffold_9 327 1079" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13502523..13510355 /note="source:INTACT232_F12_scaffold_4-int 2260 10118" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13510356..13511604 /note="source:CACAO_M_E3248_F5_scaffold_1 17617 18837" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13511498..13511631) /note="source:CACAO_M_E73119_F12_scaffold_10 2149 2278" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13511606..13512935 /note="source:INTACT1827F_F98_scaffold_15-int 4555 5883" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13513735..13514157) /note="source:INTACT242_F12_scaffold_1-int 3295 3698" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13514343..13514512) /note="source:INTACT88_F12_scaffold_4-int 12388 12555" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13514856..13514974) /note="source:CACAO_M_E47740_F12_scaffold_6 6618 6737" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13514874..13515527 /note="source:CACAO_M_E32900_F13_scaffold_4 2446 3112" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13516362..13517091 /note="source:CACAO_M_E32900_F13_scaffold_4 4175 4901" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13517149..13517389 /note="source:INTACT170_F12_scaffold_5-int 5311 5555" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13517366..13519975) /note="source:CACAO_M_E58715_F13_scaffold_9 3565 6091" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13521538..13521613 /note="source:CACAO_M_E58148_F12_scaffold_9 10858 10933" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13523047..13524695) /note="source:CACAO_M_E14837_F12_scaffold_3 8213 9863" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13524696..13527533 /note="source:CACAO_M_E36218_F15_scaffold_5 1 2838" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13527534..13532903) /note="source:CACAO_M_E50198_F12_scaffold_7 3150 8528" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13532904..13538881 /note="source:CACAO_M_E36219_F322_scaffold_5 1 2807" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13539743..13539825 /note="source:INTACT336_F12_scaffold_2-int 10118 10201" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13540861..13543447 /note="source:INTACT137_F12_scaffold_9-int 5835 8494" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13543428..13543536 /note="source:CACAO_M_E12463_F12_scaffold_3 3938 4049" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13543537..13546230 /note="source:CACAO_M_E36223_F369_scaffold_5 1 2694" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(13548160..13565449) /locus_tag="TCM_023381" /note="dbxref CacaoGD:Thecc1EG023381" mRNA complement(join(13548160..13548191,13559400..13559987, 13560908..13560926,13565432..13565449)) /locus_tag="TCM_023381" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024164t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" mobile_element 13551454..13553202 /note="source:INTACT167_F5_scaffold_2-int 3834 5691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13557114..13558313) /note="source:CACAO_M_S_E15589_F14_scaffold_2 1 1177" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(13559634..13559987,13560908..13560910)) /locus_tag="TCM_023381" /note="paralog of Thecc1EG024164t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08600.1" /translation="MITSWDYAYDVDPQNGAPVVIRTFKTKWWDKFDDRKYDHQFLNN WFNKNPKFCKMGKLSQETVRFLQAKSNASALLAQAKNKTEYKRIMVEMLNSLDSDEEQ EQEEDSTTSKETTDLS" mobile_element 13560806..13563796 /note="source:CACAO_M_E36228_F245_scaffold_5 1 2991" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 13565655..13566692 /locus_tag="TCM_023382" /note="dbxref CacaoGD:Thecc1EG023382" mRNA 13565655..13566692 /locus_tag="TCM_023382" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29929.m004513" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019849t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s18640.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaB_g14392t00001" CDS 13565771..13566340 /locus_tag="TCM_023382" /note="paralog of Thecc1EG019849t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08601.1" /db_xref="Phytozome:POPTR_0010s18640.1" /db_xref="TAIR:AT5G16250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SFU7" /translation="MGIHLNTIPQTTITRSHYHTHKFFLFCNYILLGAASSCIFLTLS LRLFPSLFGFFLILLHVLTIAGAVSGCTAASSGTNRWYAAHMVATVLTAIFQGSVSVL IFTRTSDFLGNLKSYVREDDGAVILKLAGGLCALIFCLEWVVLTLAFFLKYYAYVEGD VNGNSTAMKMSAKVQQDEDLKDWPWPFQV" gene complement(13566964..13575457) /locus_tag="TCM_023383" /note="dbxref CacaoGD:Thecc1EG023383" mRNA complement(join(13566964..13567887,13568605..13569109, 13571332..13571467,13575338..13575457)) /locus_tag="TCM_023383" /product="Plant stearoyl-acyl-carrier-protein desaturase family protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400028382" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019858t1" /inference="similar to AA sequence:ricco:29929.m004514" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc353t5" CDS complement(join(13567327..13567887,13568605..13569109, 13571332..13571447)) /locus_tag="TCM_023383" /note="dbxref ricco:29929.m004514; paralog of Thecc1EG019858t1" /codon_start=1 /product="Plant stearoyl-acyl-carrier-protein desaturase family protein" /protein_id="EOY08602.1" /db_xref="TAIR:AT3G02630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M881" /translation="MALELNPMILPSARKLPGHSNTFRSLRVSMASTLHSTPKEVNNL KKPYCPPREVHVQVTHSMPPEKIELFKTLNDWAEKNILVLLKPVESSWQPSDFLPLPE SEGFYDQVKELRERCKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLT PWAIWTRAWTAEENRHGDLLNRYLYLSGRVDMKQIEKTIQYLIGSGMDPKTENNPYLG FIYTSFQERATFISHGNTARLAKEHGDLKLAQICGIIASDEKRHETAYTKIVEKLFEI DPDGTVLALADMMKKKISMPAHLMFDGRDDNLFEHYSAVAQRIGVYTAKDYADILEFL VGRWNVEKLTGLSAEGCSAQEFVCGLPARIRRLEERAQARAKQTSTVPFSWIFERKLI V" gene complement(13571747..13581756) /locus_tag="TCM_023384" /note="dbxref CacaoGD:Thecc1EG023384" mRNA complement(join(13571747..13572126,13573032..13573696, 13581751..13581756)) /locus_tag="TCM_023384" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.96 coverage" CDS complement(join(13571975..13572126,13573032..13573110)) /locus_tag="TCM_023384" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08603.1" /translation="MMTSYKAGRRAVPVNLTRVSAPLKPTRSKKSTKKQQKMRGRTED PSGIFSHLPIPTAQTMFVVRSFPRFNPSCLLP" mobile_element 13575234..13578362 /note="source:CACAO_M_S_E54193_F51_scaffold_5 1 3129" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13579617..13579982 /note="source:CACAO_M_E35457_F33_scaffold_5 1 367" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13589813..13590158) /note="source:CACAO_M_E10224_F33_scaffold_2 1 347" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13590155..13592749) /note="source:CACAO_M_E13376_F33_scaffold_3 1 2600" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13590159..13590235 /note="source:INTACT582_F262_scaffold_3-int 345 419" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13594021..13597005 /note="source:CACAO_M_S_E54197_F7_scaffold_5 1 2985" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13597588..13600126 /note="source:CACAO_M_E9386_F106_scaffold_2 839 3352" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13600127..13602642 /note="source:INTACT280_F60_scaffold_5-int 8474 10918" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13602638..13603100 /note="source:INTACT280_F60_scaffold_5-int 13870 14334" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13603103..13604207) /note="source:INTACT8_F106_scaffold_3-int 4167 5274" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13604199..13606241) /note="source:INTACT8_F106_scaffold_3-int 1514 3559" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13610449..13610532) /note="source:scaffold_3_CACTA_0382 10476 10642" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13610533..13610667) /note="source:CACAO_M_E42343_F106_scaffold_5 6534 6669" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13610629..13610840 /note="source:CACAO_M_E43348_F5_scaffold_5 19296 19509" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13613219..13613612) /note="source:CACAO_M_E43348_F5_scaffold_5 732 1126" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13613331..13614153 /note="source:INTACT405F_F91_scaffold_4-int 61 910" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13613580..13615316) /note="source:INTACT189_F49_scaffold_5-int 17689 18859" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13615305..13616627) /note="source:CACAO_M_E12221_F121_scaffold_3 5487 6744" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13616626..13616678 /note="source:CACAO_M_E9677_F7_scaffold_2 4560 4610" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13616654..13616755) /note="source:CACAO_M_S_E2790_F7_scaffold_1 9271 9364" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13616839..13619128) /note="source:CACAO_M_E48538_F49_scaffold_6 4988 7273" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13619129..13619289 /note="source:CACAO_M_E9677_F7_scaffold_2 4562 4741" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13619311..13619360 /note="source:CACAO_M_E52812_F7_scaffold_8 5283 5332" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13619356..13620674) /note="source:CACAO_M_E12221_F121_scaffold_3 1889 3196" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13625844..13626204 /note="source:CACAO_M_E58819_F24_scaffold_9 3001 3359" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13626018..13627856) /note="source:CACAO_M_E3884_F22_scaffold_1 7687 9442" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13627890..13630817 /note="source:CACAO_M_E36234_F15_scaffold_5 1 2928" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13630818..13631484 /note="source:CACAO_M_E58819_F24_scaffold_9 15599 16268" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13631853..13632062 /note="source:CACAO_M_S_E85957_F12_scaffold_7 11216 11435" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13632063..13634689) /note="source:CACAO_M_S_E2086_F7_scaffold_1 371 3000" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13635045..13635434) /note="source:CACAO_M_S_E53041_F7_scaffold_5 1 390" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13635534..13636629 /note="source:CACAO_M_E1841_F5_scaffold_1 23277 24371" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13636731..13636795 /note="source:CACAO_M_E1841_F5_scaffold_1 24532 24595" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13636741..13636864) /note="source:CACAO_M_E33213_F12_scaffold_4 9033 9153" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13636864..13638088) /note="source:CACAO_M_E33213_F12_scaffold_4 8318 9531" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13638067..13638414 /note="source:CACAO_M_E1841_F5_scaffold_1 16061 16412" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13638302..13638432 /note="source:INTACT405F_F91_scaffold_4-int 7316 7446" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13638438..13638512 /note="source:CACAO_M_S_E6875_F7_scaffold_2 6401 6463" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13638507..13638638) /note="source:CACAO_M_E33213_F12_scaffold_4 8120 8250" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13638509..13638657 /note="source:CACAO_M_S_E85957_F12_scaffold_7 13841 13982" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13641512..13644267 /note="source:CACAO_M_E36235_F333_scaffold_5 1 2756" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13644191..13644275) /note="source:CACAO_M_E86361_F7_scaffold_15 6198 6281" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13649898..13650566 /note="source:CACAO_M_E1841_F5_scaffold_1 14494 15161" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13654666..13657260 /note="source:CACAO_M_S_E5046_F335_scaffold_1 18259 20864" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13659650..13659708 /note="source:scaffold_2_CACTA_0256 17641 17699" /mobile_element_type="transposon:TIR/CACTA" gene complement(13663485..13666876) /locus_tag="TCM_023392" /note="dbxref CacaoGD:Thecc1EG023392" mRNA complement(join(13663485..13663513,13663958..13664238, 13664417..13665007,13666643..13666876)) /locus_tag="TCM_023392" /product="Translation initiation factor 2, small GTP-binding protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006917t1" /inference="similar to AA sequence:frave:gene32016" /note="quality class is strong, express is none, homology is ortholog strong, intron is none, protein is complete" CDS complement(join(13663967..13664238,13664417..13664942)) /locus_tag="TCM_023392" /note="dbxref frave:gene32016; paralog of Thecc1EG006917t1" /codon_start=1 /product="Translation initiation factor 2, small GTP-binding protein" /protein_id="EOY08604.1" /db_xref="TAIR:AT4G11160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q67ZW2" /translation="MLKAALGHLKDFLVILQEVGASVKRIHANEGARILSRPPIVTVM GHVNHGKTSLLDALHQTSVAAKEASGITQHLVDFVVCMPSGQSITFLDTLGHAAFSAM PARGATITDIDVLVVVADARVIPQTLEAMAHAKAANVPIVVAVNKCDKPTTQESKSIS CFRGFADGGDGWRCSGTLVCGKHVAVGLKWGRIRAIRDMVGKMIQRATPVMLVQIEGL KGLPMAGDDIVVVQSKERARMLSVTRKKKFEKDRLLKISNGRAEALE" mobile_element complement(13665278..13665405) /note="source:CACAO_M_E3884_F22_scaffold_1 13051 13211" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(13667750..13668820) /locus_tag="TCM_023393" /note="dbxref CacaoGD:Thecc1EG023393" mRNA complement(13667750..13668820) /locus_tag="TCM_023393" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS complement(13668284..13668505) /locus_tag="TCM_023393" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08605.1" /translation="MTSVQIPQVRKKARLELISAGPPMGLLKFNVDSAASGSSGGGNL RDGKGLIKVMFSKSIGIDDFNFNYRRSLY" gene complement(13669238..13684254) /locus_tag="TCM_023394" /note="dbxref CacaoGD:Thecc1EG023394" mRNA complement(join(13669238..13670014,13670667..13670775, 13671143..13671245,13671355..13671389,13671466..13671680, 13673703..13673818,13674641..13674866,13676580..13676667, 13676740..13676814,13681677..13681752,13682156..13682214, 13682354..13682420,13683867..13683985)) /locus_tag="TCM_023394" /product="Beta-glucosidase, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma11g16220.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025115t1" /inference="similar to AA sequence:Phytozome:Glyma11g16220.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05507t00001" mRNA complement(join(13669515..13670014,13670667..13670775, 13671143..13671245,13671355..13671389,13671466..13671680, 13673703..13673818,13674641..13674866,13676580..13676667, 13676740..13676814,13681677..13681752,13682156..13682214, 13682354..13682424,13683850..13684254)) /locus_tag="TCM_023394" /product="Beta-glucosidase, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma11g16220.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025115t1" /inference="similar to AA sequence:Phytozome:Glyma11g16220.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4172t3; inference alignment:Newbler:10:TSA:cgbaB_g05507t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc786t11" mRNA complement(join(13669571..13670014,13670667..13670775, 13671143..13671245,13671355..13671389,13671466..13671680, 13673703..13673818,13674641..13674866,13676580..13676667, 13676740..13676814,13681677..13681752,13682156..13682214, 13682354..13682420,13683846..13684099)) /locus_tag="TCM_023394" /product="Beta-glucosidase, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma11g16220.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025115t1" /inference="similar to AA sequence:Phytozome:Glyma11g16220.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05507t00001; inference alignment:Newbler:10:TSA:cgbaB_g05507t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc786t11" CDS complement(join(13669819..13670014,13670667..13670775, 13671143..13671245,13671355..13671389,13671466..13671680, 13673703..13673818,13674641..13674866,13676580..13676667, 13676740..13676814,13681677..13681752,13682156..13682214, 13682354..13682420,13683867..13683944)) /locus_tag="TCM_023394" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG025115t1" /codon_start=1 /product="Beta-glucosidase, putative isoform 1" /protein_id="EOY08606.1" /db_xref="Phytozome:Glyma11g16220.1" /db_xref="TAIR:AT5G36890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RM06" /translation="MAKKELLVENGEEVCRADFSPSFVFGIEGACNEGSRGASIWDSF SRTEGKIVDGSTGDVAVDHYHRYKEDVDLISKFGFDAYRFSISWSRIFPDGLGTRVND EGITFYNNLIDALLEKGIQPYVTLYHWDLPLHLHESIGGWLNKQIVKYFAIYADTCFA HFGDRVKNWITINEPLQTAVNGYDTGIFAPGRCEGSSAEPYLAAHHQILAHATAVSIY RSKYKDKQGGQIGLVLDCEWAEANSDKIEDKSAAARRLDFQLGWYMCPLYYGDYPAVM RERIGDRLPKFSQEEKELLGNSLDFIGLNHYTSRFIAHVNNGSEESFFYRAQEMERTV EWEGGEKIGEKAASEWLYVVPWGIRKVLNYIAQTYSNLPIYVTENGMDDEENKSLPLH EILDDKLRVRYFKGYLAAVAQAIKDGADVRGYFAWSLLDNFEWAQGYTKRFGLVYVDY KNGLTRHPKSSAYWFSRFLKGGEKKSGKED" CDS complement(join(13669819..13670014,13670667..13670775, 13671143..13671245,13671355..13671389,13671466..13671680, 13673703..13673818,13674641..13674866,13676580..13676667, 13676740..13676814,13681677..13681752,13682156..13682214, 13682354..13682424,13683850..13683944)) /locus_tag="TCM_023394" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG025115t1" /codon_start=1 /product="Beta-glucosidase, putative isoform 3" /protein_id="EOY08608.1" /db_xref="Phytozome:Glyma11g16220.1" /db_xref="TAIR:AT5G36890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RM06" /translation="MAKKELLVENGEEVCRADFSPSFVFGVATSXXQIEGACNEGSRG ASIWDSFSRTEGKIVDGSTGDVAVDHYHRYKEDVDLISKFGFDAYRFSISWSRIFPDG LGTRVNDEGITFYNNLIDALLEKGIQPYVTLYHWDLPLHLHESIGGWLNKQIVKYFAI YADTCFAHFGDRVKNWITINEPLQTAVNGYDTGIFAPGRCEGSSAEPYLAAHHQILAH ATAVSIYRSKYKDKQGGQIGLVLDCEWAEANSDKIEDKSAAARRLDFQLGWYMCPLYY GDYPAVMRERIGDRLPKFSQEEKELLGNSLDFIGLNHYTSRFIAHVNNGSEESFFYRA QEMERTVEWEGGEKIGEKAASEWLYVVPWGIRKVLNYIAQTYSNLPIYVTENGMDDEE NKSLPLHEILDDKLRVRYFKGYLAAVAQAIKDGADVRGYFAWSLLDNFEWAQGYTKRF GLVYVDYKNGLTRHPKSSAYWFSRFLKGGEKKSGKED" CDS complement(join(13669819..13670014,13670667..13670775, 13671143..13671245,13671355..13671389,13671466..13671680, 13673703..13673818,13674641..13674866,13676580..13676667, 13676740..13676814,13681677..13681752,13682156..13682214, 13682354..13682420,13683846..13683944)) /locus_tag="TCM_023394" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG025115t1" /codon_start=1 /product="Beta-glucosidase, putative isoform 2" /protein_id="EOY08607.1" /db_xref="Phytozome:Glyma11g16220.1" /db_xref="TAIR:AT5G36890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RM06" /translation="MAKKELLVENGEEVCRADFSPSFVFGVATSXXXIEGACNEGSRG ASIWDSFSRTEGKIVDGSTGDVAVDHYHRYKEDVDLISKFGFDAYRFSISWSRIFPDG LGTRVNDEGITFYNNLIDALLEKGIQPYVTLYHWDLPLHLHESIGGWLNKQIVKYFAI YADTCFAHFGDRVKNWITINEPLQTAVNGYDTGIFAPGRCEGSSAEPYLAAHHQILAH ATAVSIYRSKYKDKQGGQIGLVLDCEWAEANSDKIEDKSAAARRLDFQLGWYMCPLYY GDYPAVMRERIGDRLPKFSQEEKELLGNSLDFIGLNHYTSRFIAHVNNGSEESFFYRA QEMERTVEWEGGEKIGEKAASEWLYVVPWGIRKVLNYIAQTYSNLPIYVTENGMDDEE NKSLPLHEILDDKLRVRYFKGYLAAVAQAIKDGADVRGYFAWSLLDNFEWAQGYTKRF GLVYVDYKNGLTRHPKSSAYWFSRFLKGGEKKSGKED" mobile_element 13683688..13683753 /note="source:INTACT296_F13_scaffold_9-int 13174 13241" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13685252..13686851) /note="source:CACAO_M_E33977_F20_scaffold_4 14946 16541" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13686661..13687340) /note="source:scaffold_9_CACTA_0922 6401 7079" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13687340..13688753) /note="source:CACAO_M_E33977_F20_scaffold_4 12853 14250" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13688214..13691463 /note="source:CACAO_Mutator_E1888_scaffold_9 1849 4950" /mobile_element_type="transposon:TIR/Mutator" mobile_element 13691750..13692058 /note="source:CACAO_Mutator_E1410_scaffold_6 5335 5640" /mobile_element_type="transposon:TIR/Mutator" mobile_element 13692355..13692418 /note="source:CACAO_Mutator_E161_scaffold_1 5878 5947" /mobile_element_type="transposon:TIR/Mutator" mobile_element 13692418..13692465 /note="source:CACAO_Mutator_E161_scaffold_1 4050 4099" /mobile_element_type="transposon:TIR/Mutator" mobile_element 13692435..13692478 /note="source:CACAO_Mutator_E161_scaffold_1 5228 5266" /mobile_element_type="transposon:TIR/Mutator" mobile_element 13692474..13692587 /note="source:scaffold_1_CACTA_0009 9424 9537" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(13692588..13692601) /note="source:CACAO_on_E193_scaffold_6 3416 3548" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(13692656..13692945) /note="source:CACAO_Mutator_E1410_scaffold_6 5707 5997" /mobile_element_type="transposon:TIR/Mutator" mobile_element 13692697..13694827 /note="source:CACAO_Mutator_E1410_scaffold_6 5707 7836" /mobile_element_type="transposon:TIR/Mutator" mobile_element 13694830..13697524 /note="source:CACAO_M_S_E54208_F345_scaffold_5 1 2695" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13697525..13699353) /note="source:CACAO_M_E33977_F20_scaffold_4 5407 7231" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13699066..13699570 /note="source:scaffold_1_CACTA_0009 13257 13833" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13700163..13700334 /note="source:CACAO_M_S_E51998_F88_scaffold_5 452 626" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13700358..13701660 /note="source:CACAO_M_S_E51998_F88_scaffold_5 6800 8122" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13702108..13702876) /note="source:CACAO_Mutator_E1888_scaffold_9 6736 7531" /mobile_element_type="transposon:TIR/Mutator" mobile_element 13702206..13704094 /note="source:INTACT584_F15_scaffold_3-int 8177 10066" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13704195..13705430 /note="source:INTACT584_F15_scaffold_3-int 10093 11548" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13705876..13706077) /note="source:CACAO_Mutator_E1998_scaffold_9 6249 6449" /mobile_element_type="transposon:TIR/Mutator" gene complement(13706809..13719281) /locus_tag="TCM_023399" /note="dbxref CacaoGD:Thecc1EG023399" mRNA complement(join(13706809..13707742,13707818..13707853, 13708522..13708651,13708787..13708895,13709270..13709303, 13709783..13710807,13711401..13711537,13712596..13712737, 13712861..13713217,13713330..13714227,13714358..13714442, 13714691..13714740,13716371..13716417,13716515..13716612, 13716752..13717013,13718452..13718670,13718837..13719281)) /locus_tag="TCM_023399" /product="Sister chromatid cohesion 1 protein 4, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29929.m004508" /inference="similar to AA sequence:frave:gene21547" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc924t14" CDS complement(join(13707725..13707742,13707818..13707853, 13708522..13708651,13708787..13708895,13709270..13709303, 13709783..13710807,13711401..13711537,13712596..13712737, 13712861..13713217,13713330..13714227,13714358..13714442, 13714691..13714740,13716371..13716417,13716515..13716612, 13716752..13717013,13718452..13718575)) /locus_tag="TCM_023399" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene21547" /codon_start=1 /product="Sister chromatid cohesion 1 protein 4, putative isoform 1" /protein_id="EOY08609.1" /db_xref="TAIR:AT5G16270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H7V8" /translation="MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSI LFPEVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEEST APYHSITLPETFDLDDFELPDNEIFQGNYVDHHVSSREQITLQDTMDGVVYSTSQFGL DERFGDGDTSQIGLLDEELFLDRVAASGHGGVSVADLHGSDEQQKQDPSNSEVMPMDC SGDQVEGLAANSEFVEYDQDPATPGVVEVPNLSVVHESLAGDDHVEPEHHNLTELANF ECVENVSSGKANHLHGHNNVVDLSLQNDKNHDAIVIVPPENGSHIRDLEKEQSKPQGN SVHDVVSVEYKSADGTRGGPDGLDRVEDMHNGAMHSMDRADGECAESPSCSNVTFDLE DPARRTCSSSTCVPTSDAYMENDQASHKSEFRNDVETTDNLEESFSPAKTSNPSCPLE SPSRPTVIDGEAQACQEPNDSENMKKPVIHEEVSSVQVLGSDNLAAVDQNSVDLSRRE EEVRAFGASIEVEGEACQTQMSEPALCDDQLENLNNCAMSDLPAPEMLLSALEGHIDK PSDLLGESTPDKEVFAGDDETGAGMKLISGKKRSITESTLTVESLNSVESFGRPRSRR TAESVPDDDDLLSSILVGRRSSVFKMKPTPPPEIASMKRARSAPRPSASKRKVLMDDT MVLHGDTIRLQLVNTEDIRRIRKKAPCTRPEISLIQRQFLEDEIFTEPIFTGLASDLS CLHSEAYDLRGIRISEGNEVHASSEVAKDPEFSVRPNVDGGGIEGSSVPVICGNDEQA QCAGTSMQTDTQQAEYNDLNAQQDKNAVDDVPQVLRHEPLDGVVEMEIGRGNVEVANA TLNEFEVSSPTNLATEDTSNMTAGKISHTVDGSMLNDASCLPPDQKMSTQPGEDAELD MRNDKGTNPTEVLENVVESAVPSETESKATNEFLLEESKAGTSVEVSIDIQADGFAPI ENGMNSLATVQTVEGLNGAQNADEIGYGKVGVVDEARVEDALLDHDDKDPICKGSEER KMDSIYSEKVDVVLKNASLNDGETPNFQEVNAVNAEMTSLVDNQAEFEHVAIANDTEF LNVDDDELVEDDDDGMPCGDESRLLENSGWSSRTRAVAKYLQNLFEDEAIHGRKVLSM DSLLDRKTRKEASRMFFETLVLKTRDYIHVEQEKQIQ" mRNA complement(join(13707780..13708651,13708787..13708895, 13709270..13709303,13709783..13710807,13711401..13711537, 13712596..13712737,13712861..13713217,13713330..13714227, 13714358..13714442,13714691..13714740,13716371..13716417, 13716515..13716612,13716752..13717013,13718452..13719247)) /locus_tag="TCM_023399" /product="Sister chromatid cohesion 1 protein 4, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:29929.m004508" /inference="similar to AA sequence:frave:gene21547" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc997t10; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc924t14; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13777t3" mRNA complement(join(13707816..13708895,13709270..13709303, 13709783..13710807,13711401..13711537,13712596..13712737, 13712861..13713217,13713330..13714227,13714358..13714442, 13714691..13714740,13716371..13716417,13716515..13716612, 13716752..13717013,13718452..13719229)) /locus_tag="TCM_023399" /product="Sister chromatid cohesion 1 protein 4, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:29929.m004508" /inference="similar to AA sequence:frave:gene21547" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc924t12; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc924t14; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13777t3" CDS complement(join(13708465..13708651,13708787..13708895, 13709270..13709303,13709783..13710807,13711401..13711537, 13712596..13712737,13712861..13713217,13713330..13714227, 13714358..13714442,13714691..13714740,13716371..13716417, 13716515..13716612,13716752..13717013,13718452..13718575)) /locus_tag="TCM_023399" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene21547" /codon_start=1 /product="Sister chromatid cohesion 1 protein 4, putative isoform 2" /protein_id="EOY08610.1" /db_xref="TAIR:AT5G16270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H7V8" /translation="MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSI LFPEVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEEST APYHSITLPETFDLDDFELPDNEIFQGNYVDHHVSSREQITLQDTMDGVVYSTSQFGL DERFGDGDTSQIGLLDEELFLDRVAASGHGGVSVADLHGSDEQQKQDPSNSEVMPMDC SGDQVEGLAANSEFVEYDQDPATPGVVEVPNLSVVHESLAGDDHVEPEHHNLTELANF ECVENVSSGKANHLHGHNNVVDLSLQNDKNHDAIVIVPPENGSHIRDLEKEQSKPQGN SVHDVVSVEYKSADGTRGGPDGLDRVEDMHNGAMHSMDRADGECAESPSCSNVTFDLE DPARRTCSSSTCVPTSDAYMENDQASHKSEFRNDVETTDNLEESFSPAKTSNPSCPLE SPSRPTVIDGEAQACQEPNDSENMKKPVIHEEVSSVQVLGSDNLAAVDQNSVDLSRRE EEVRAFGASIEVEGEACQTQMSEPALCDDQLENLNNCAMSDLPAPEMLLSALEGHIDK PSDLLGESTPDKEVFAGDDETGAGMKLISGKKRSITESTLTVESLNSVESFGRPRSRR TAESVPDDDDLLSSILVGRRSSVFKMKPTPPPEIASMKRARSAPRPSASKRKVLMDDT MVLHGDTIRLQLVNTEDIRRIRKKAPCTRPEISLIQRQFLEDEIFTEPIFTGLASDLS CLHSEAYDLRGIRISEGNEVHASSEVAKDPEFSVRPNVDGGGIEGSSVPVICGNDEQA QCAGTSMQTDTQQAEYNDLNAQQDKNAVDDVPQVLRHEPLDGVVEMEIGRGNVEVANA TLNEFEVSSPTNLATEDTSNMTAGKISHTVDGSMLNDASCLPPDQKMSTQPGEDAELD MRNDKGTNPTEVLENVVESAVPSETESKATNEFLLEESKAGTSVEVSIDIQADGFAPI ENGMNSLATVQTVEGLNGAQNADEIGYGKVGVVDEARVEDALLDHDDKDPICKGSEER KMDSIYSEKVDVVLKNASLNDGETPNFQEVNAVNAEMTSLVDNQAEFEHVAIANDTEF LNVDDDELVEDDDDGMPCGDESRLLENSGWSSRTRAVAKYLQNLFEDEAIHGRKVLSM DSLLDRKTRKEASRMFFETLVRLLKLVSKFVTFFHVPL" CDS complement(join(13708465..13708895,13709270..13709303, 13709783..13710807,13711401..13711537,13712596..13712737, 13712861..13713217,13713330..13714227,13714358..13714442, 13714691..13714740,13716371..13716417,13716515..13716612, 13716752..13717013,13718452..13718575)) /locus_tag="TCM_023399" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene21547" /codon_start=1 /product="Sister chromatid cohesion 1 protein 4, putative isoform 3" /protein_id="EOY08611.1" /db_xref="TAIR:AT5G16270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H7V8" /translation="MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSI LFPEVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEEST APYHSITLPETFDLDDFELPDNEIFQGNYVDHHVSSREQITLQDTMDGVVYSTSQFGL DERFGDGDTSQIGLLDEELFLDRVAASGHGGVSVADLHGSDEQQKQDPSNSEVMPMDC SGDQVEGLAANSEFVEYDQDPATPGVVEVPNLSVVHESLAGDDHVEPEHHNLTELANF ECVENVSSGKANHLHGHNNVVDLSLQNDKNHDAIVIVPPENGSHIRDLEKEQSKPQGN SVHDVVSVEYKSADGTRGGPDGLDRVEDMHNGAMHSMDRADGECAESPSCSNVTFDLE DPARRTCSSSTCVPTSDAYMENDQASHKSEFRNDVETTDNLEESFSPAKTSNPSCPLE SPSRPTVIDGEAQACQEPNDSENMKKPVIHEEVSSVQVLGSDNLAAVDQNSVDLSRRE EEVRAFGASIEVEGEACQTQMSEPALCDDQLENLNNCAMSDLPAPEMLLSALEGHIDK PSDLLGESTPDKEVFAGDDETGAGMKLISGKKRSITESTLTVESLNSVESFGRPRSRR TAESVPDDDDLLSSILVGRRSSVFKMKPTPPPEIASMKRARSAPRPSASKRKVLMDDT MVLHGDTIRLQLVNTEDIRRIRKKAPCTRPEISLIQRQFLEDEIFTEPIFTGLASDLS CLHSEAYDLRGIRISEGNEVHASSEVAKDPEFSVRPNVDGGGIEGSSVPVICGNDEQA QCAGTSMQTDTQQAEYNDLNAQQDKNAVDDVPQVLRHEPLDGVVEMEIGRGNVEVANA TLNEFEVSSPTNLATEDTSNMTAGKISHTVDGSMLNDASCLPPDQKMSTQPGEDAELD MRNDKGTNPTEVLENVVESAVPSETESKATNEFLLEESKAGTSVEVSIDIQADGFAPI ENGMNSLATVQTVEGLNGAQNADEIGYGKVGVVDEARVEDALLDHDDKDPICKGSEER KMDSIYSEKVDVVLKNASLNDGETPNFQEVNAVNAEMTSLVDNQAEFEHVAIANDTEF LNVDDDELVEDDDDGMPCGDESRLLENSGWSSRTRSVRDVVYFFPLILTLILVLLAII FSCTFIRLAHILMFAHTLFSFRAVAKYLQNLFEDEAIHGRKVLSMDSLLDRKTRKEAS RMFFETLVRLLKLVSKFVTFFHVPL" mRNA complement(join(13708866..13709303,13709783..13710807, 13711401..13711537,13712596..13712737,13712861..13713217, 13713330..13714227,13714358..13714442,13714691..13714740, 13716371..13716417,13716515..13716612,13716752..13717013, 13718452..13719229)) /locus_tag="TCM_023399" /product="Sister chromatid cohesion 1 protein 4, putative isoform 4" /inference="alignment:exonerate- protein:2:ricco:29929.m004508" /inference="similar to AA sequence:frave:gene21547" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc999t11; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc924t14; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13777t3" CDS complement(join(13709217..13709303,13709783..13710807, 13711401..13711537,13712596..13712737,13712861..13713217, 13713330..13714227,13714358..13714442,13714691..13714740, 13716371..13716417,13716515..13716612,13716752..13717013, 13718452..13718575)) /locus_tag="TCM_023399" /note="encoded by transcript variant 4; alternatively spliced; dbxref frave:gene21547" /codon_start=1 /product="Sister chromatid cohesion 1 protein 4, putative isoform 4" /protein_id="EOY08612.1" /db_xref="TAIR:AT5G16270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H7V8" /translation="MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSI LFPEVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKIKQAFRSTAVDLPPEEST APYHSITLPETFDLDDFELPDNEIFQGNYVDHHVSSREQITLQDTMDGVVYSTSQFGL DERFGDGDTSQIGLLDEELFLDRVAASGHGGVSVADLHGSDEQQKQDPSNSEVMPMDC SGDQVEGLAANSEFVEYDQDPATPGVVEVPNLSVVHESLAGDDHVEPEHHNLTELANF ECVENVSSGKANHLHGHNNVVDLSLQNDKNHDAIVIVPPENGSHIRDLEKEQSKPQGN SVHDVVSVEYKSADGTRGGPDGLDRVEDMHNGAMHSMDRADGECAESPSCSNVTFDLE DPARRTCSSSTCVPTSDAYMENDQASHKSEFRNDVETTDNLEESFSPAKTSNPSCPLE SPSRPTVIDGEAQACQEPNDSENMKKPVIHEEVSSVQVLGSDNLAAVDQNSVDLSRRE EEVRAFGASIEVEGEACQTQMSEPALCDDQLENLNNCAMSDLPAPEMLLSALEGHIDK PSDLLGESTPDKEVFAGDDETGAGMKLISGKKRSITESTLTVESLNSVESFGRPRSRR TAESVPDDDDLLSSILVGRRSSVFKMKPTPPPEIASMKRARSAPRPSASKRKVLMDDT MVLHGDTIRLQLVNTEDIRRIRKKAPCTRPEISLIQRQFLEDEIFTEPIFTGLASDLS CLHSEAYDLRGIRISEGNEVHASSEVAKDPEFSVRPNVDGGGIEGSSVPVICGNDEQA QCAGTSMQTDTQQAEYNDLNAQQDKNAVDDVPQVLRHEPLDGVVEMEIGRGNVEVANA TLNEFEVSSPTNLATEDTSNMTAGKISHTVDGSMLNDASCLPPDQKMSTQPGEDAELD MRNDKGTNPTEVLENVVESAVPSETESKATNEFLLEESKAGTSVEVSIDIQADGFAPI ENGMNSLATVQTVEGLNGAQNADEIGYGKVGVVDEARVEDALLDHDDKDPICKGSEER KMDSIYSEKVDVVLKNASLNDGETPNFQEVNAVNAEMTSLVDNQAEFEHVAIANDTGL VLVPSVLLLPFSSYG" gene complement(13718736..13727748) /locus_tag="TCM_023400" /note="dbxref CacaoGD:Thecc1EG023400" mRNA complement(join(13718736..13719270,13727260..13727748)) /locus_tag="TCM_023400" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.71 coverage" CDS complement(join(13718943..13719270,13727260..13727486)) /locus_tag="TCM_023400" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08613.1" /translation="MRKLMLSLARFRSAFRVMSAYRNVATVVMGPMGVSGRDTAPHED HNVTSSTSAPPSSSIEQTINNLYGYMQSMNARQHGGKHKTKLEFEKQISFFLQKPKER FPYSSLIQKSPSPDFLSGRSDSLFQSLQFAFFATQLLNFRCSPNASVSFKARVSTSKR KLGFIYWILEVRCFEVLRAAISVN" mobile_element complement(13719384..13720719) /note="source:CACAO_Mutator_E1888_scaffold_9 5793 7797" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(13726329..13726403) /note="source:INTACT1430F_F92_scaffold_9-int 7479 7549" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13727372..13730326) /note="source:CACAO_M_E71723_F228_scaffold_10 1 2955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13737386..13737626 /note="source:INTACT464_F222_scaffold_9-int 1174 1421" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13737689..13742584) /note="source:INTACT117_F146_scaffold_2-int 753 7270" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13744991..13745353 /note="source:INTACT642F_F365_scaffold_5-int 5910 6271" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13746290..13749395 /note="source:CACAO_M_E36241_F15_scaffold_5 1 3106" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13750237..13750553) /note="source:INTACT95_F143_scaffold_9-int 5588 5899" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13750554..13753448 /note="source:CACAO_M_E36243_F86_scaffold_5 1 2895" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13753455..13754625 /note="source:CACAO_M_E33001_F33_scaffold_4 1806 2955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13754626..13755189 /note="source:INTACT19_F111_scaffold_6-int 15559 16120" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13757826..13758954 /note="source:CACAO_M_S_E101456_F33_scaffold_9 1 1126" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13759055..13760869 /note="source:CACAO_M_S_E101456_F33_scaffold_9 1143 2957" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13761869..13762725 /note="source:INTACT139F_F15_scaffold_2-int 7693 8549" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(13764882..13784135) /locus_tag="TCM_023404" /note="dbxref CacaoGD:Thecc1EG023404" mRNA complement(join(13764882..13765129,13768913..13769328, 13781176..13782271,13784070..13784135)) /locus_tag="TCM_023404" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039253t1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.37 coverage" mobile_element 13765092..13765137 /note="source:scaffold_8_CACTA_0859 15405 15444" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13766389..13769327 /note="source:CACAO_M_E36253_F33_scaffold_5 1 2939" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13771653..13772303 /note="source:INTACT60_F127_scaffold_9-int 2195 2844" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13772479..13777058) /note="source:INTACT82_F14_scaffold_11-int 8659 13224" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(13781244..13781690) /locus_tag="TCM_023404" /note="paralog of Thecc1EG039253t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08614.1" /translation="MKHQDTEQGQLAMALGIYGLVIFPKVLGHKEVGIIDFFEQVINK VNPSPSILAKTLRSLNYYRRKKKGRFVGCAQLFSIWIISHFECKVKWFKKPFHPQSAP IKEFCDSEWPKNKTKEQWISKLRKLISVEVTWRASWMPRHPVMYKC" mobile_element complement(13785236..13785561) /note="source:CACAO_M_S_E83372_F14_scaffold_6 852 1178" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13785565..13786676) /note="source:INTACT82_F14_scaffold_11-int 6335 7434" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13786677..13797610 /note="source:INTACT163_F158_scaffold_5-int 1 10934" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13797611..13800313 /note="source:CACAO_M_E13038_F22_scaffold_3 11791 14385" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13800311..13808743) /note="source:INTACT82_F14_scaffold_11-int 1350 9854" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13808651..13808771 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3143 3250" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13808872..13810235) /note="source:INTACT82_F14_scaffold_11-int 1 1380" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13810170..13810243) /note="source:CACAO_M_E42514_F40_scaffold_5 14438 14512" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13813985..13820147 /note="source:CACAO_M_S_E7105_F60_scaffold_2 2 6203" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13820131..13820670 /note="source:CACAO_M_E45234_F22_scaffold_6 8458 9533" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13820671..13823405 /note="source:INTACT293_F14_scaffold_5-int 8680 11455" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13823389..13824153 /note="source:CACAO_M_S_E145445_F22_scaffold_10 522 1279" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13824154..13834306 /note="source:INTACT754_F12_scaffold_5-int 1 10153" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13834307..13835593) /note="source:INTACT1793F_F14_scaffold_10-int 7611 8897" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13835594..13838595 /note="source:CACAO_M_E36268_F277_scaffold_5 1 3002" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13838596..13844849 /note="source:CACAO_M_E45234_F22_scaffold_6 2533 8765" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13844820..13845019) /note="source:INTACT146F_F14_scaffold_2-int 14232 14428" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13844842..13845504 /note="source:CACAO_M_E870_F22_scaffold_1 1378 2043" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13845532..13846026) /note="source:INTACT49_F22_scaffold_9-int 1 499" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13845924..13846050) /note="source:CACAO_M_E42514_F40_scaffold_5 14431 14550" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13846027..13849083 /note="source:CACAO_M_S_E7105_F60_scaffold_2 6199 9283" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13853221..13855265 /note="source:CACAO_M_E5870_F358_scaffold_2 1 2041" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13856669..13856759 /note="source:CACAO_M_E23991_F4_scaffold_4 13955 14042" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13857681..13857893 /note="source:CACAO_M_E23991_F4_scaffold_4 4009 4231" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13858843..13858904 /note="source:CACAO_M_E23991_F4_scaffold_4 12650 12711" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13861895..13861984 /note="source:CACAO_M_S_E7818_F60_scaffold_2 18548 18622" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13864030..13867045 /note="source:CACAO_M_E36274_F7_scaffold_5 1 3016" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13868413..13870993 /note="source:CACAO_M_E5627_F4_scaffold_2 3757 6364" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13872028..13873841) /note="source:CACAO_M_E2982_F85_scaffold_1 1530 3335" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13873842..13875545 /note="source:CACAO_M_E36281_F15_scaffold_5 1 1704" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13876189..13876960 /note="source:CACAO_M_E36281_F15_scaffold_5 1705 2476" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13876961..13877902 /note="source:CACAO_M_E69836_F85_scaffold_9 1802 2743" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13878003..13878587 /note="source:CACAO_M_S_E54814_F85_scaffold_5 2741 3325" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13884704..13886942) /note="source:CACAO_M_E23991_F4_scaffold_4 7806 9885" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(13887060..13887204) /note="source:CACAO_M_E23991_F4_scaffold_4 7497 7641" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13887205..13887329 /note="source:CACAO_M_E14624_F369_scaffold_3 1 125" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13887720..13889911) /note="source:CACAO_M_E43119_F369_scaffold_5 1 2202" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13889913..13891272) /note="source:CACAO_M_E23991_F4_scaffold_4 6132 7500" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13891363..13892828 /note="source:CACAO_M_E11415_F328_scaffold_2 11894 13353" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13891608..13893087) /note="source:CACAO_M_E84368_F4_scaffold_10 13352 14835" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13893129..13893547 /note="source:scaffold_2_CACTA_0260 3989 4408" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13893520..13893547 /note="source:INTACT255_F60_scaffold_8-int 3649 3689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13893548..13896300) /note="source:CACAO_M_E322_F328_scaffold_1 416 3158" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13896487..13896595 /note="source:scaffold_2_CACTA_0260 4403 4512" /mobile_element_type="transposon:TIR/CACTA" mobile_element 13902002..13903800 /note="source:CACAO_M_S_E68231_F4_scaffold_6 1 1802" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 13903801..13911125 /note="source:INTACT79_F137_scaffold_5-int 1 7325" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13911126..13911193 /note="source:CACAO_M_S_E66461_F76_scaffold_5 9458 9525" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13912475..13926335 /note="source:CACAO_M_E36294_F51_scaffold_5 1 13861" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 13918687..13925950 /locus_tag="TCM_023422" /note="dbxref CacaoGD:Thecc1EG023422" mRNA join(13918687..13919555,13925925..13925950) /locus_tag="TCM_023422" /product="Gag protease polyprotein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039262t1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.52 coverage" CDS 13918882..13919415 /locus_tag="TCM_023422" /note="paralog of Thecc1EG039262t1" /codon_start=1 /product="Gag protease polyprotein" /protein_id="EOY08615.1" /translation="MKLKDDMKLMVATRLLEKRARTWWNLVKSRFTTPLTWSNFLQEF DDQYYTYFHQKEKKREFLSLKQGSLTIKEYEACFNELMSYVPNLVKTEQDQANYFEEG LQNEIRDRMTVMGKEPYKEVVQMALRAEKLATENRKIRAEFAKRRNPNISSNQPLKKG KDFSASGSATTFSIAST" mobile_element 13928228..13928622 /note="source:CACAO_M_E3129_F369_scaffold_1 1 396" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13928625..13933684 /note="source:CACAO_M_E42395_F3_scaffold_5 7461 12514" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 13933860..13943938 /locus_tag="TCM_023426" /note="dbxref CacaoGD:Thecc1EG023426" mRNA join(13933860..13933911,13937401..13938552, 13939016..13939794,13943912..13943938) /locus_tag="TCM_023426" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004065t1" /inference="similar to AA sequence:Phytozome:Glyma07g34840.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.35 coverage" mobile_element 13934438..13937215 /note="source:CACAO_M_E36299_F87_scaffold_5 1 2778" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(13937749..13938552,13939016..13939237) /locus_tag="TCM_023426" /note="paralog of Thecc1EG004065t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08616.1" /db_xref="Phytozome:Glyma07g34840.1" /translation="MAQTRNLKTIDANLWLLNSGASNHMTPNVKLFVEIDDQYCSKVE IGNDVYLQATRKGLVPIQTSSGARYEFEVLFVLEITKNLLSVGQMLKHNYVLLLKDMS CTIYAPNGDYMMNISMKQNCFPVNWKYACLQATKVHSNLTSLWHKRFGHCNYNSLIQL SNSGLVDKLPKLSECGPICQTCQLGKIAQKPYPTTSFSKSKDKLNLIHSDVGGPLSEE SLNGSRHFVTFIDDLTRFCWIFFMKQKLETLSWFQKCKARAELKFGMKIKNRSWNWEQ SQATDLNEFIDVSNYQHTDSQILVGDEIVDEALVRGVRSIQNIYERCHMAITELNSYE DTAVHEH" gene complement(13938354..13943879) /locus_tag="TCM_023427" /note="dbxref CacaoGD:Thecc1EG023427" mRNA complement(join(13938354..13939046,13943818..13943879)) /locus_tag="TCM_023427" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.58 coverage" CDS complement(13938614..13938871) /locus_tag="TCM_023427" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08617.1" /translation="MLITKTSKPSQMIYKRPGPIPCFIWSDILLCLSRNNIEQVHYCR SCFCSKSFGHIFLKHQAPTHLKYYVIFPLTYPILLEAIWSC" mobile_element 13939673..13942620 /note="source:CACAO_M_E36300_F158_scaffold_5 1 2948" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(13943994..13948218) /locus_tag="TCM_023428" /note="dbxref CacaoGD:Thecc1EG023428" mRNA complement(join(13943994..13944272,13947222..13947417, 13947496..13947558,13947741..13948218)) /locus_tag="TCM_023428" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(join(13944019..13944272,13947222..13947417, 13947496..13947558,13947741..13947938)) /locus_tag="TCM_023428" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08618.1" /translation="MHSPSLLNPHGLVVGSPSNPLLGLPPAAIASPCQLMVTHNLPAN QKLQSPPVHGLPQAMQSAEELHNASTVGNSLGFKGIGLIGAYEVWFIASQKMRVFKWF VDFQMEKESLIILVWKYFPNLKVHLLKKSALLTIAKIAGKSLVVDEAMANALGEALRG DAAPKMQIRPDTYGTNISPRTSYGLVASIAYNISIEEDSEMVEEQGACSVIKEHISVP FGAIVGSEDIEVHPSFSC" mobile_element complement(13944365..13946228) /note="source:CACAO_M_E35511_F5_scaffold_5 8742 10604" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13949131..13950211 /note="source:CACAO_M_E42395_F3_scaffold_5 3496 4463" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13950209..13950547 /note="source:CACAO_M_E42395_F3_scaffold_5 17892 18230" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13950649..13953373) /note="source:CACAO_M_E23859_F15_scaffold_4 1 2763" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13953679..13956600 /note="source:CACAO_M_S_E66239_F143_scaffold_5 60 2984" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13957000..13957044 /note="source:INTACT189_F49_scaffold_5-int 17727 17772" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13957254..13957330 /note="source:INTACT189_F49_scaffold_5-int 17820 17903" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13958193..13958884) /note="source:INTACT215_F33_scaffold_4-int 9820 10511" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13965915..13966351) /note="source:CACAO_M_S_E7818_F60_scaffold_2 20527 20963" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13966034..13966495 /note="source:INTACT410F_F357_scaffold_4-int 84 548" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13966692..13967413) /note="source:INTACT222_F33_scaffold_7-int 4349 5054" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13967631..13969092) /note="source:CACAO_M_E33870_F15_scaffold_4 1640 3099" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13969193..13970856) /note="source:CACAO_M_E33870_F15_scaffold_4 1 1636" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(13972424..13972507) /note="source:CACAO_M_E14347_F12_scaffold_3 8778 8853" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13972483..13972559 /note="source:CACAO_M_E72142_F322_scaffold_10 735 810" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13974873..13975092 /note="source:CACAO_M_E42395_F3_scaffold_5 1 220" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13975093..13977773 /note="source:CACAO_M_E36309_F144_scaffold_5 1 2681" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13977774..13978817 /note="source:CACAO_M_E42395_F3_scaffold_5 19334 20383" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13978811..13979196 /note="source:CACAO_M_E42395_F3_scaffold_5 1326 1776" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 13983543..13986530 /note="source:CACAO_M_E36310_F7_scaffold_5 1 2988" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(13988216..13997687) /locus_tag="TCM_023432" /note="dbxref CacaoGD:Thecc1EG023432" mRNA complement(join(13988216..13989123,13989451..13989566, 13990881..13990963,13991114..13991260,13993289..13993336, 13993430..13993624,13994091..13994265,13994343..13994407, 13994768..13994894,13995097..13995189,13995393..13995481, 13995591..13995737,13996013..13996325,13996409..13997075, 13997533..13997613)) /locus_tag="TCM_023432" /product="LETM1 and EF-hand domain-containing protein 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29929.m004507" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019795t1" /inference="similar to AA sequence:ricco:29929.m004507" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc486t3" mRNA complement(join(13988656..13989123,13989451..13989566, 13990881..13990963,13991114..13991260,13993289..13993336, 13993430..13993624,13994091..13994265,13994343..13994407, 13994768..13994894,13995097..13995189,13995393..13995481, 13995591..13995737,13996013..13996325,13996409..13997139, 13997533..13997687)) /locus_tag="TCM_023432" /product="LETM1 and EF-hand domain-containing protein 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29929.m004507" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019795t1" /inference="similar to AA sequence:ricco:29929.m004507" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc486t3; alternateUTRof:Thecc1EG023432t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc486t3" CDS complement(join(13989041..13989123,13989451..13989566, 13990881..13990963,13991114..13991260,13993289..13993336, 13993430..13993624,13994091..13994265,13994343..13994407, 13994768..13994894,13995097..13995189,13995393..13995481, 13995591..13995737,13996013..13996325,13996409..13997004)) /locus_tag="TCM_023432" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29929.m004507; paralog of Thecc1EG019795t1" /codon_start=1 /product="LETM1 and EF-hand domain-containing protein 1 isoform 1" /protein_id="EOY08619.1" /db_xref="TAIR:AT1G65540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHZ8" /translation="MASRVISRRRSCVFSSPIRPTSLIRGFSWFEHRLSSTSEDSRGS GWLASHPYQNTDSKKVALPSVPNNELSYFLAAQFHRSNSFGISKSGYQVGNLDFVSPL GLRWFSQSARSASTATAGQPQLGSGNDGSEQQAPKKVKEASPEECDQAVEGLSTVKAK AKAKQVQDSPKSAQSIIKKVWAAFLGIGPALRTVASMSREDWAKKLRHWKDEFKSTMQ HYWLGTKLLWADIRISSRLLVKLANGKGLSRRERQQLTRTTADIFRLVPFAVFIIVPF MEFLLPVFLKLFPNMLPSTFQDKMKEQEALKRRLNARIEYAKFLQDTVKEMAKEIQNS RSGDVKKTAEDLDEFMNKVRTGAGVSNDEILGFAKLFNDELTLDNISRPRLVNMCKYM GISPYGTDAYLRYMLRKRLQEIKNDDKMIQAEGVESLSEAELRQACRDRGLLGLLSVE EMRQQLRDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAVQATLSSLPDEVVDTVGV TALPSEDSVSERRRKLEFLEMQEELIKEEEEEEEEEQAKLKESISNEKDVALKEMAAS TAKEAQELAKAKTLEKHEQLCELSRALAVLASASSVSREREEFLRLVKKEIQLYNSMV EKEGTKGEEEAKKAYKAARKDSDRTAGKAIGDKVSSALIDRVDAMLQKLEKEIDDVDA KIGDHWRLLDRDYDGKVTPEEVASAAMYLKDTLGKEGIQELISNLSKDREGKILVEDM VKLGSETEDADTAEAGRS" CDS complement(join(13989041..13989123,13989451..13989566, 13990881..13990963,13991114..13991260,13993289..13993336, 13993430..13993624,13994091..13994265,13994343..13994407, 13994768..13994894,13995097..13995189,13995393..13995481, 13995591..13995737,13996013..13996325,13996409..13997004)) /locus_tag="TCM_023432" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29929.m004507; paralog of Thecc1EG019795t1" /codon_start=1 /product="LETM1 and EF-hand domain-containing protein 1 isoform 1" /protein_id="EOY08620.1" /db_xref="TAIR:AT1G65540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHZ8" /translation="MASRVISRRRSCVFSSPIRPTSLIRGFSWFEHRLSSTSEDSRGS GWLASHPYQNTDSKKVALPSVPNNELSYFLAAQFHRSNSFGISKSGYQVGNLDFVSPL GLRWFSQSARSASTATAGQPQLGSGNDGSEQQAPKKVKEASPEECDQAVEGLSTVKAK AKAKQVQDSPKSAQSIIKKVWAAFLGIGPALRTVASMSREDWAKKLRHWKDEFKSTMQ HYWLGTKLLWADIRISSRLLVKLANGKGLSRRERQQLTRTTADIFRLVPFAVFIIVPF MEFLLPVFLKLFPNMLPSTFQDKMKEQEALKRRLNARIEYAKFLQDTVKEMAKEIQNS RSGDVKKTAEDLDEFMNKVRTGAGVSNDEILGFAKLFNDELTLDNISRPRLVNMCKYM GISPYGTDAYLRYMLRKRLQEIKNDDKMIQAEGVESLSEAELRQACRDRGLLGLLSVE EMRQQLRDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAVQATLSSLPDEVVDTVGV TALPSEDSVSERRRKLEFLEMQEELIKEEEEEEEEEQAKLKESISNEKDVALKEMAAS TAKEAQELAKAKTLEKHEQLCELSRALAVLASASSVSREREEFLRLVKKEIQLYNSMV EKEGTKGEEEAKKAYKAARKDSDRTAGKAIGDKVSSALIDRVDAMLQKLEKEIDDVDA KIGDHWRLLDRDYDGKVTPEEVASAAMYLKDTLGKEGIQELISNLSKDREGKILVEDM VKLGSETEDADTAEAGRS" mRNA complement(join(13989534..13989566,13990881..13990963, 13991114..13991260,13993289..13993336,13993430..13993624, 13994051..13994265,13994343..13994407,13994768..13994894, 13995097..13995189,13995393..13995481,13995591..13995737, 13996013..13996325,13996409..13997139,13997533..13997687)) /locus_tag="TCM_023432" /product="LETM1 and EF-hand domain-containing protein 1 isoform 3" /inference="alignment:exonerate- protein:2:ricco:29929.m004507" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019795t1" /inference="similar to AA sequence:ricco:29929.m004507" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc478t4; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc486t3" CDS complement(join(13993572..13993624,13994051..13994265, 13994343..13994407,13994768..13994894,13995097..13995189, 13995393..13995481,13995591..13995737,13996013..13996325, 13996409..13997004)) /locus_tag="TCM_023432" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29929.m004507; paralog of Thecc1EG019795t1" /codon_start=1 /product="LETM1 and EF-hand domain-containing protein 1 isoform 3" /protein_id="EOY08621.1" /db_xref="TAIR:AT1G65540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHZ8" /translation="MASRVISRRRSCVFSSPIRPTSLIRGFSWFEHRLSSTSEDSRGS GWLASHPYQNTDSKKVALPSVPNNELSYFLAAQFHRSNSFGISKSGYQVGNLDFVSPL GLRWFSQSARSASTATAGQPQLGSGNDGSEQQAPKKVKEASPEECDQAVEGLSTVKAK AKAKQVQDSPKSAQSIIKKVWAAFLGIGPALRTVASMSREDWAKKLRHWKDEFKSTMQ HYWLGTKLLWADIRISSRLLVKLANGKGLSRRERQQLTRTTADIFRLVPFAVFIIVPF MEFLLPVFLKLFPNMLPSTFQDKMKEQEALKRRLNARIEYAKFLQDTVKEMAKEIQNS RSGDVKKTAEDLDEFMNKVRTGAGVSNDEILGFAKLFNDELTLDNISRPRLVNMCKYM GISPYGTDAYLRYMLRKRLQEIKNDDKMIQAEGVESLSEAELRQACRDRGLLGLLSVE EMRQQLRDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAVQATLSSLPDEVVDTVGV TALPSEDSVSERRRKLEFLEMQEELIKVYYVNALLDVPCSGGGRGGGRGTSQVKRIY" mRNA complement(join(<13993597..13993624,13994051..13994265, 13994343..13994407,13994768..13994894,13995097..13995189, 13995393..13995481,13995591..13995737,13996013..13996325, 13996409..13997075,13997533..13997687)) /locus_tag="TCM_023432" /product="LETM1 and EF-hand domain-containing protein 1 isoform 4" /inference="alignment:exonerate- protein:2:ricco:29929.m004507" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019795t1" /inference="similar to AA sequence:ricco:29929.m004507" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc491t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc486t3" CDS complement(join(<13993599..13993624,13994051..13994265, 13994343..13994407,13994768..13994894,13995097..13995189, 13995393..13995481,13995591..13995737,13996013..13996325, 13996409..13997004)) /locus_tag="TCM_023432" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29929.m004507; paralog of Thecc1EG019795t1" /codon_start=1 /product="LETM1 and EF-hand domain-containing protein 1 isoform 4" /protein_id="EOY08622.1" /db_xref="TAIR:AT1G65540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHZ8" /translation="MASRVISRRRSCVFSSPIRPTSLIRGFSWFEHRLSSTSEDSRGS GWLASHPYQNTDSKKVALPSVPNNELSYFLAAQFHRSNSFGISKSGYQVGNLDFVSPL GLRWFSQSARSASTATAGQPQLGSGNDGSEQQAPKKVKEASPEECDQAVEGLSTVKAK AKAKQVQDSPKSAQSIIKKVWAAFLGIGPALRTVASMSREDWAKKLRHWKDEFKSTMQ HYWLGTKLLWADIRISSRLLVKLANGKGLSRRERQQLTRTTADIFRLVPFAVFIIVPF MEFLLPVFLKLFPNMLPSTFQDKMKEQEALKRRLNARIEYAKFLQDTVKEMAKEIQNS RSGDVKKTAEDLDEFMNKVRTGAGVSNDEILGFAKLFNDELTLDNISRPRLVNMCKYM GISPYGTDAYLRYMLRKRLQEIKNDDKMIQAEGVESLSEAELRQACRDRGLLGLLSVE EMRQQLRDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAVQATLSSLPDEVVDTVGV TALPSEDSVSERRRKLEFLEMQEELIKVYYVNALLDVPCSGGGRGGGRG" mobile_element 14001548..14004475 /note="source:CACAO_M_S_E54284_F33_scaffold_5 1 2928" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14005838..14006491 /note="source:CACAO_M_E58601_F7_scaffold_9 8820 9476" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 14006268..14011342 /locus_tag="TCM_023436" /note="dbxref CacaoGD:Thecc1EG023436" mRNA join(14006268..14006701,14010434..14010544, 14010668..14010778,14010936..14011342) /locus_tag="TCM_023436" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.16 coverage" mobile_element complement(14006620..14006685) /note="source:INTACT406_F208_scaffold_3-int 6801 6862" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14006628..14007108 /note="source:CACAO_M_E58601_F7_scaffold_9 9473 9946" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14006700..14007452) /note="source:CACAO_M_S_E7818_F60_scaffold_2 5808 6479" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14007528..14008303) /note="source:CACAO_M_S_E7818_F60_scaffold_2 5125 5900" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14008223..14008314 /note="source:CACAO_M_E24592_F195_scaffold_4 18653 18740" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(14010504..14010544,14010668..14010778, 14010936..14011077) /locus_tag="TCM_023436" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08623.1" /translation="MLLEKMKYEEVKRTREDEGAVLQARVLPRYKIKIGFIIEYIPSI VRGRLWRWVTLWLLALVEDIDAWNAFPWGHYVWRLIEDCLLQWFEVPLKTSDK" mobile_element complement(14014147..14015245) /note="source:CACAO_M_E5326_F22_scaffold_2 3944 4978" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14015254..14015740 /note="source:INTACT78_F136_scaffold_6-int 1598 2094" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14015378..14021127) /note="source:INTACT701_F305_scaffold_10-int 6438 12207" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14021432..14021581 /note="source:CACAO_M_E35511_F5_scaffold_5 16055 16203" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14021448..14021768) /note="source:CACAO_M_E5326_F22_scaffold_2 4701 4978" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14021781..14022940) /note="source:INTACT363_F7_scaffold_9-int 1 1157" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14022941..14027407 /note="source:CACAO_M_E14113_F106_scaffold_3 12920 17415" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14027407..14028868) /note="source:CACAO_M_S_E109876_F7_scaffold_9 1540 3006" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14028830..14028868) /note="source:CACAO_Again_on_E14_scaffold_1 9898 9929" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(14028869..14031162) /note="source:CACAO_M_E12513_F52_scaffold_3 653 2943" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14031163..14034269 /note="source:CACAO_M_E36325_F15_scaffold_5 1 3107" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14034270..14034896) /note="source:CACAO_M_E35546_F52_scaffold_5 1 656" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14034897..14036985) /note="source:CACAO_M_E48588_F7_scaffold_6 6522 8615" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14036977..14039132) /note="source:INTACT363_F7_scaffold_9-int 4169 6330" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14038978..14043560 /note="source:INTACT715_F7_scaffold_5-int 5334 9920" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14043561..14044781 /note="source:INTACT172_F47_scaffold_2-int 6563 7811" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14044763..14046454 /note="source:CACAO_M_E14113_F106_scaffold_3 18701 20431" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14046527..14046875) /note="source:CACAO_M_S_E33139_F368_scaffold_4 1 352" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14046877..14054919 /note="source:INTACT521_F72_scaffold_5-int 1 8043" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14055998..14057231 /note="source:CACAO_M_E14113_F106_scaffold_3 4364 5603" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14059067..14062761) /note="source:INTACT8_F106_scaffold_3-int 4851 8601" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14064622..14065063) /note="source:CACAO_M_S_E52339_F15_scaffold_5 11673 12114" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14065989..14066380 /note="source:scaffold_8_CACTA_0859 2442 2834" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14066481..14067271 /note="source:scaffold_8_CACTA_0859 13786 14576" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14067269..14067886 /note="source:CACAO_M_S_E6875_F7_scaffold_2 3229 3846" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14068894..14069049 /note="source:INTACT540_F242_scaffold_5-int 1590 1744" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14069364..14070255) /note="source:CACAO_on_E18_scaffold_1 2846 3746" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(14070240..14070994) /note="source:INTACT560_F15_scaffold_3-int 7944 8713" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14070993..14072048) /note="source:INTACT8_F106_scaffold_3-int 3532 4590" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14072038..14072814 /note="source:INTACT39F_F22_scaffold_1-int 3561 4334" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14073333..14075684 /note="source:INTACT39F_F22_scaffold_1-int 5057 7434" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(14075400..14088333) /locus_tag="TCM_023443" /note="dbxref CacaoGD:Thecc1EG023443" mRNA complement(join(14075400..14075841,14077423..14077621, 14078078..14078688,14078956..14079117,14084134..14084315, 14084439..14084633,14088173..14088333)) /locus_tag="TCM_023443" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007833t1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete" CDS complement(join(14075694..14075841,14077423..14077621, 14078078..14078688,14078956..14079077)) /locus_tag="TCM_023443" /note="paralog of Thecc1EG007833t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08624.1" /translation="MGEDRGALLVQVDDSEEQFGNLLLCQMQTQHTEYREEPFSRKHI FHLTTIDGENPIAFMESSWPLLGYDGIYELTQHVASPQLREGDCLAKGHISSLPNRVY LDLKQNNFTYLLNIWERWRSMTRGNFDKRYGHIARLLKVQIDDQLLKAIVQFWDPSYR CFVLNEVDMVPTIEEYSTLLQIDLDNHDKIFWKGQKIGHRQKLAKMMGTTLEEVNQHL RKKGNNECIPWSFLRSYIMKHQDTEQGMISYAPFMVRRQFRSEQFVLMTYRLNTLEFA YGELGFLKTIKEIARVWKKTSQVNQGRYTDEVTIRWFSKIKSLRSLLSIIDVAVTDYK QDSTSTPLLRCLTQEYPRTQLNLGL" mobile_element complement(14075726..14075860) /note="source:INTACT357_F72_scaffold_9-int 3186 3320" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14076396..14076735 /note="source:CACAO_M_S_E85405_F7_scaffold_7 2652 2990" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14082032..14082076 /note="source:INTACT296_F13_scaffold_9-int 13172 13217" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(14083875..14085066) /locus_tag="TCM_023445" /note="dbxref CacaoGD:Thecc1EG023445" mRNA complement(join(14083875..14084315,14084439..14085066)) /locus_tag="TCM_023445" /product="H0502G05.11 protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036470t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(14084097..14084315,14084439..14084648)) /locus_tag="TCM_023445" /note="paralog of Thecc1EG036470t1" /codon_start=1 /product="H0502G05.11 protein, putative" /protein_id="EOY08625.1" /translation="MQVLKENNKRMMETITQFASSTTITFQPPPMPIENVTNVVKNNE NGRNGESTIDPFLNTTNPSIVANPIMVAAKPYPKDYISSKFKQFNGKTGDTLEHVMKL VETLGVIGLDNNLTLKEFSKSLTEKAYTWYVNLTLNLVDS" mobile_element 14086717..14087738 /note="source:CACAO_M_S_E4413_F3_scaffold_1 642 1619" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 14088986..14091969 /locus_tag="TCM_023446" /note="dbxref CacaoGD:Thecc1EG023446" mRNA join(14088986..14090403,14090579..14091869) /locus_tag="TCM_023446" /product="BAK1-interacting receptor-like kinase 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s07830.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002598t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s18550.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc837t6" mRNA join(14089036..14090403,14090579..14091969) /locus_tag="TCM_023446" /product="BAK1-interacting receptor-like kinase 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s07830.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002598t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s18550.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc837t8; alternateUTRof:Thecc1EG023446t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc837t6" CDS join(14089537..14090403,14090579..14091583) /locus_tag="TCM_023446" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG002598t1" /codon_start=1 /product="BAK1-interacting receptor-like kinase 1 isoform 1" /protein_id="EOY08626.1" /db_xref="Phytozome:POPTR_0010s18550.1" /db_xref="TAIR:AT5G48380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ASS4" /translation="MNFCWDMALNGKALAVLGYNLICFALVLLSGRVCQATPNDIECL KSVKASLEDPYSYLSSWNFNNGTEGFICKFTGVDCWHPDENKVLNIRLSDLGLKGRFP QGIGKCESLTGLDLSSNKLSGLIPSDISEKLKYVTTLDLSDNNFSGPIPPSLANCSFL NVLKLGNNRLTGAIPLQLGVLNRIKTFNVANNQLSGQIPDFGPNVTIQADSYANNPGL CGKILQPCPGIPMKSRVGTIAASAVGGVTITAIIVGIILFYFSRGAAMKKKEDDPEGN KWAKTIKGKKGIKVSMFEESVSKMRLSDLMNSTNEFSKSNIIGMGRTGTMYKAMIPDG YCLMIKRLEDFQRLEKEFVSEMNTLGSVKHRNLVPLLGFCVAKKERFLVYKYMENGTL YDKLHPAEPEVRNMDWPLRLRIGIGAARGLAWLHHNCNPRIIHRNISSKCILLDGDCE PKLSDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYPRTLVATPKGDIYSFGVVLLE LITGEKPTHVVNAPESFRGSLAEWITQLSSSFLLQTAIDKSLLGNGFDSEVMQFLRVA CNCVLPTPKERPTMFEVYQLLRAIGEGYHFTTEDEIMQPSNSNNTDVPELIVAQEAK" CDS join(14089537..14090403,14090579..14091583) /locus_tag="TCM_023446" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG002598t1" /codon_start=1 /product="BAK1-interacting receptor-like kinase 1 isoform 1" /protein_id="EOY08627.1" /db_xref="Phytozome:POPTR_0010s18550.1" /db_xref="TAIR:AT5G48380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ASS4" /translation="MNFCWDMALNGKALAVLGYNLICFALVLLSGRVCQATPNDIECL KSVKASLEDPYSYLSSWNFNNGTEGFICKFTGVDCWHPDENKVLNIRLSDLGLKGRFP QGIGKCESLTGLDLSSNKLSGLIPSDISEKLKYVTTLDLSDNNFSGPIPPSLANCSFL NVLKLGNNRLTGAIPLQLGVLNRIKTFNVANNQLSGQIPDFGPNVTIQADSYANNPGL CGKILQPCPGIPMKSRVGTIAASAVGGVTITAIIVGIILFYFSRGAAMKKKEDDPEGN KWAKTIKGKKGIKVSMFEESVSKMRLSDLMNSTNEFSKSNIIGMGRTGTMYKAMIPDG YCLMIKRLEDFQRLEKEFVSEMNTLGSVKHRNLVPLLGFCVAKKERFLVYKYMENGTL YDKLHPAEPEVRNMDWPLRLRIGIGAARGLAWLHHNCNPRIIHRNISSKCILLDGDCE PKLSDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYPRTLVATPKGDIYSFGVVLLE LITGEKPTHVVNAPESFRGSLAEWITQLSSSFLLQTAIDKSLLGNGFDSEVMQFLRVA CNCVLPTPKERPTMFEVYQLLRAIGEGYHFTTEDEIMQPSNSNNTDVPELIVAQEAK" gene complement(14090579..14103593) /locus_tag="TCM_023447" /note="dbxref CacaoGD:Thecc1EG023447" mRNA complement(join(14090579..14091971,14092057..14092189, 14092728..14092793,14093620..14093772,14094142..14094264, 14094344..14094448,14098940..14099023,14101899..14101967, 14102157..14102240,14102650..14102863,14103152..14103593)) /locus_tag="TCM_023447" /product="Valine-tolerant 1 isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT5G16290.2.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG047047t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s07820.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:PASA:2:TSA:puevd3b022683t1a2; inference alignment:Newbler:10:TSA:cgbaB_g06626t00001" mRNA complement(join(14091654..14091971,14092057..14092189, 14092728..14092793,14093620..14093772,14094142..14094264, 14094344..14094448,14094966..14095052,14096532..14096684, 14098940..14099023,14101899..14101967,14102157..14102240, 14102650..14102863,14103152..14103593)) /locus_tag="TCM_023447" /product="ACT domain-containing small subunit of acetolactate synthase protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT5G16290.2.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG047047t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s07820.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06626t00001" CDS complement(join(14092106..14092189,14092728..14092793, 14093620..14093772,14094142..14094264,14094344..14094448, 14098940..14099023,14101899..14101967,14102157..14102240, 14102650..14102863,14103152..14103378)) /locus_tag="TCM_023447" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG047047t1" /codon_start=1 /product="Valine-tolerant 1 isoform 2" /protein_id="EOY08629.1" /db_xref="Phytozome:POPTR_0008s07820.1" /db_xref="TAIR:AT5G16290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q00ZA1" /translation="MAAASVSPSPYSTTTIPTQNPPFSRKTTGFLHLRQCSIYYNGFK ARSRSLHVVSATTDKANALPLNETVSPATASKVKRHTISVFVGDESGIINRIAGVFAR RGYNIESLAVGLNKDKAIFTIVVSGTEMILRQVVEQLNKLVNVIKVEDISKEPHVERE LMLIKLHADADTRAEVMWLVDIFRAKIVDTSEQFLTIEVTGDPGKMAAVQRNLSKFGI KELARTGKSSGLQSHTLSMVVNDTPGVLNVVTGVISRRGYNIQSLAVGPAERDELSRI TTVVPGTNETIGKLVQQLQKLVDLYEVQDMTHLPFAERELMLVKVAVNTAARRDVLDI ASIFRAKAVDVSDHTITLELTGDLNKMVALQRLLEPYGICEVTRTGRVALVRESGVDS TSLRGYSLPF" CDS complement(join(14092106..14092189,14092728..14092793, 14093620..14093772,14094142..14094264,14094344..14094448, 14094966..14095052,14096532..14096684,14098940..14099023, 14101899..14101967,14102157..14102240,14102650..14102863, 14103152..14103378)) /locus_tag="TCM_023447" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG047047t1" /codon_start=1 /product="ACT domain-containing small subunit of acetolactate synthase protein isoform 1" /protein_id="EOY08628.1" /db_xref="Phytozome:POPTR_0008s07820.1" /db_xref="TAIR:AT5G16290.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A8JCR6" /translation="MAAASVSPSPYSTTTIPTQNPPFSRKTTGFLHLRQCSIYYNGFK ARSRSLHVVSATTDKANALPLNETVSPATASKVKRHTISVFVGDESGIINRIAGVFAR RGYNIESLAVGLNKDKAIFTIVVSGTEMILRQVVEQLNKLVNVIKVEDISKEPHVERE LMLIKLHADADTRAEVMWLVDIFRAKIVDTSEQFLTIEVTGDPGKMAAVQRNLSKFGI KELARTGKIALRREKLGQTAPFWGFSAASYPDLDSRSTNGGSIRDAKQLLNGNAHTYS KGDVYPVEPYDDFPINQVLDAHWGVLFDEDSSGLQSHTLSMVVNDTPGVLNVVTGVIS RRGYNIQSLAVGPAERDELSRITTVVPGTNETIGKLVQQLQKLVDLYEVQDMTHLPFA ERELMLVKVAVNTAARRDVLDIASIFRAKAVDVSDHTITLELTGDLNKMVALQRLLEP YGICEVTRTGRVALVRESGVDSTSLRGYSLPF" mobile_element 14107505..14117693 /note="source:CACAO_M_E36333_F12_scaffold_5 1 10189" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14119176..14119302 /note="source:CACAO_M_E13038_F22_scaffold_3 75 220" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14119428..14119530) /note="source:INTACT135F_F90_scaffold_2-int 748 846" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14119594..14122488 /note="source:CACAO_M_E36334_F86_scaffold_5 1 2895" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14125582..14127450 /note="source:CACAO_M_E65323_F12_scaffold_9 7737 9590" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14127455..14132458 /note="source:CACAO_M_E69551_F193_scaffold_9 3406 8436" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14132453..14136133) /note="source:INTACT135F_F90_scaffold_2-int 1574 5289" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14136131..14138243) /note="source:CACAO_M_E14347_F12_scaffold_3 10835 12948" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14140114..14140830) /note="source:CACAO_M_S_E4534_F4_scaffold_1 4050 4768" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14141517..14141612 /note="source:CACAO_M_E1841_F5_scaffold_1 4328 4432" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14141534..14141616) /note="source:CACAO_M_S_E4534_F4_scaffold_1 3759 3851" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14145095..14146038 /note="source:CACAO_M_E1841_F5_scaffold_1 3101 4024" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14151611..14152320) /note="source:INTACT189_F49_scaffold_5-int 17863 18572" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14152783..14154228 /note="source:CACAO_M_S_E6619_F15_scaffold_2 4 1454" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14154228..14158663 /note="source:CACAO_M_E43672_F60_scaffold_5 5180 9608" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14158659..14159471 /note="source:CACAO_M_E36294_F51_scaffold_5 2262 3103" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14159724..14159992) /note="source:CACAO_M_E1841_F5_scaffold_1 14896 15161" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14164083..14164801) /note="source:CACAO_M_E1841_F5_scaffold_1 4758 5469" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14165761..14165794) /note="source:CACAO_M_E1841_F5_scaffold_1 3832 3865" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14166634..14172700 /note="source:INTACT10_F4_scaffold_6-int 1 6086" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14172701..14175255 /note="source:CACAO_M_S_E50960_F369_scaffold_4 12358 15024" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14175214..14175270) /note="source:CACAO_M_E1841_F5_scaffold_1 8326 8383" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14175257..14176191 /note="source:INTACT10_F4_scaffold_6-int 6081 7014" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14176192..14178321) /note="source:CACAO_M_E36294_F51_scaffold_5 11724 13861" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14178322..14179090 /note="source:CACAO_M_E49857_F85_scaffold_7 1 822" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14181248..14181601 /note="source:CACAO_M_E69460_F12_scaffold_9 10396 10752" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14181338..14182563) /note="source:CACAO_M_E36294_F51_scaffold_5 10782 11731" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14182564..14184129) /note="source:CACAO_M_S_E84261_F4_scaffold_6 1 1567" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14185087..14187901 /note="source:CACAO_M_E36358_F15_scaffold_5 1 2815" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14191168..14191721 /note="source:CACAO_M_S_E5046_F335_scaffold_1 19287 20791" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14191722..14192686 /note="source:CACAO_M_S_E99244_F4_scaffold_9 5390 6341" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14192687..14192711 /note="source:CACAO_M_S_E5046_F335_scaffold_1 20792 20864" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14194812..14196115) /note="source:scaffold_3_CACTA_0382 10513 11825" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14195785..14196189) /note="source:CACAO_M_E5899_F5_scaffold_2 20529 20960" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14198036..14200903 /note="source:CACAO_M_E36360_F15_scaffold_5 1 2868" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14201051..14201357 /note="source:INTACT701_F305_scaffold_10-int 3768 4074" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14201358..14204319 /note="source:CACAO_M_E36363_F15_scaffold_5 1 2962" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14204320..14206557 /note="source:CACAO_M_S_E84244_F33_scaffold_6 11833 14076" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14206784..14207906) /note="source:CACAO_M_E24592_F195_scaffold_4 1459 2570" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(14207987..>14208765) /locus_tag="TCM_023455" /note="dbxref CacaoGD:Thecc1EG023455" mRNA complement(14207987..>14208765) /locus_tag="TCM_023455" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" mobile_element 14208010..14208186 /note="source:CACAO_M_S_E51867_F7_scaffold_4 4551 4749" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14208270..14208315) /note="source:CACAO_M_E59539_F98_scaffold_9 4227 4272" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(14208447..>14208764) /locus_tag="TCM_023455" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08630.1" /translation="YDVCITQLLRYAPHLVLIEQNRIKRFIRGLIEPLFRVLATQMFS SYATMVVVVKMTETRRMDKRRVEEFSYKANRVVDILADFEFHIYMLLKSQGEHSYVQA SKK" mobile_element complement(14214630..14220727) /note="source:CACAO_M_S_E18399_F231_scaffold_3 4424 10562" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14220723..14222624 /note="source:INTACT183F_F349_scaffold_3-int 5480 7383" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14222625..14223697 /note="source:CACAO_M_E42289_F15_scaffold_5 1 1070" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14223699..14224565 /note="source:INTACT93F_F345_scaffold_2-int 15073 15938" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14224562..14231888 /note="source:INTACT93F_F345_scaffold_2-int 1504 15938" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14231885..14232742 /note="source:CACAO_M_E12953_F322_scaffold_3 1508 2362" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14232750..14233085) /note="source:INTACT597_F267_scaffold_2-int 12990 13327" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14233483..14234861) /note="source:INTACT597_F267_scaffold_2-int 11620 13014" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14234853..14239468) /note="source:scaffold_2_CACTA_0262 5534 10816" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14239432..14240122) /note="source:INTACT597_F267_scaffold_2-int 5756 6448" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14241504..14244441 /note="source:CACAO_M_E36371_F7_scaffold_5 1 2938" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14245287..14246492) /note="source:CACAO_M_E35511_F5_scaffold_5 8743 9918" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14249983..14251049) /note="source:CACAO_M_E5899_F5_scaffold_2 21678 22714" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14253033..14253452) /note="source:INTACT224_F176_scaffold_8-int 16440 16869" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14253457..14254095) /note="source:scaffold_2_CACTA_0262 7916 8555" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14254229..14254423 /note="source:INTACT405F_F91_scaffold_4-int 7339 7603" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14257014..14258206) /note="source:scaffold_2_CACTA_0259 3980 5122" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14258137..14258546 /note="source:CACAO_M_E43744_F324_scaffold_5 5219 5637" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14261874..14263613) /note="source:CACAO_M_E13157_F7_scaffold_3 3463 5149" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14265780..14268429 /note="source:CACAO_M_E36378_F335_scaffold_5 1 2650" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14268742..14268945) /note="source:CACAO_M_E35188_F7_scaffold_5 3224 3434" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14268936..14269008) /note="source:INTACT504_F7_scaffold_1-int 3056 3126" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14269280..14269326) /note="source:INTACT504_F7_scaffold_1-int 2627 2673" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14269316..14269971) /note="source:CACAO_M_E5899_F5_scaffold_2 22035 22689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14271883..14271973) /note="source:CACAO_M_E5899_F5_scaffold_2 19646 19739" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14279133..14279952) /note="source:CACAO_M_E52636_F51_scaffold_7 2289 3115" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14279953..14282924 /note="source:CACAO_M_E85348_F277_scaffold_11 1 3007" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14282925..14289432) /note="source:INTACT226_F51_scaffold_1-int 3911 10425" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14289433..14292458 /note="source:CACAO_M_E36387_F7_scaffold_5 1 3026" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14292459..14295405) /note="source:INTACT226_F51_scaffold_1-int 1005 3915" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14295345..14295406 /note="source:CACAO_M_S_E64951_F7_scaffold_5 1942 2004" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14295407..14298344) /note="source:CACAO_M_E940_F44_scaffold_1 1 2950" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14298380..14301374 /note="source:CACAO_M_S_E54378_F7_scaffold_5 1 2995" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14301375..14302270 /note="source:CACAO_M_E53127_F51_scaffold_8 2123 3024" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14302243..14302389) /note="source:CACAO_M_S_E1495_F60_scaffold_1 10329 10479" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14302270..14302668 /note="source:INTACT215_F33_scaffold_4-int 8036 8434" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14303838..14304430 /note="source:INTACT216_F33_scaffold_5-int 1571 2163" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14304531..14305027 /note="source:CACAO_M_S_E6875_F7_scaffold_2 5836 6334" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14305032..14305118 /note="source:CACAO_M_E58453_F51_scaffold_9 3018 3104" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14312535..14315522 /note="source:CACAO_M_E36395_F7_scaffold_5 1 2988" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14317658..14323988) /note="source:INTACT83_F5_scaffold_9-int 1510 8011" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14323989..14325824) /note="source:CACAO_M_S_E18399_F231_scaffold_3 8703 10562" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14325820..14326566) /note="source:CACAO_M_S_E85177_F5_scaffold_7 17652 18401" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14326567..14326918 /note="source:CACAO_M_E58819_F24_scaffold_9 3008 3359" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14326769..14327879) /note="source:INTACT669_F295_scaffold_3-int 7938 9032" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14328072..14328283 /note="source:INTACT679_F298_scaffold_6-int 7894 8107" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14328391..14329289) /note="source:INTACT83_F5_scaffold_9-int 1 892" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14328618..14329261 /note="source:CACAO_M_E58819_F24_scaffold_9 15629 16268" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14329263..14329308 /note="source:CACAO_M_E42395_F3_scaffold_5 17444 17488" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14329416..14329904) /note="source:INTACT83_F5_scaffold_9-int 862 1352" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14329906..14332862 /note="source:CACAO_M_S_E54391_F246_scaffold_5 1 2957" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14332863..14333789) /note="source:INTACT83_F5_scaffold_9-int 11470 12356" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14335203..14337370 /note="source:CACAO_M_E58324_F9_scaffold_9 2 2193" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14337371..14348349 /note="source:INTACT216_F33_scaffold_5-int 1 10979" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14348350..14348610 /note="source:CACAO_M_E72867_F9_scaffold_10 2183 2307" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14348611..14349255) /note="source:CACAO_M_E10016_F245_scaffold_2 2294 2939" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14349256..14352200 /note="source:CACAO_M_E36407_F72_scaffold_5 1 2945" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14352201..14362504 /note="source:INTACT717_F312_scaffold_5-int 652 10962" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14362506..14363278 /note="source:CACAO_M_E58324_F9_scaffold_9 2440 3198" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14363282..14363941 /note="source:INTACT224_F176_scaffold_8-int 4172 4831" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14364207..14371685 /note="source:INTACT224_F176_scaffold_8-int 4827 12269" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14371026..14372876 /note="source:scaffold_2_CACTA_0263 2002 3913" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14372877..14375980 /note="source:CACAO_M_E36408_F15_scaffold_5 1 3104" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14375981..14376701 /note="source:scaffold_2_CACTA_0263 3909 4634" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14377807..14378085 /note="source:scaffold_2_CACTA_0263 7673 7951" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14378085..14378809) /note="source:CACAO_M_E5899_F5_scaffold_2 21982 22689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14378911..14380171) /note="source:CACAO_M_E5899_F5_scaffold_2 20523 21828" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14380269..14383156) /note="source:CACAO_M_S_E109853_F60_scaffold_9 13121 14931" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14383078..14383167 /note="source:INTACT161_F156_scaffold_5-int 2733 2820" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14383220..14384552) /note="source:INTACT597_F267_scaffold_2-int 12500 13830" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14385132..14385166 /note="source:scaffold_2_CACTA_0263 1789 1823" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14388181..14392181 /note="source:INTACT160_F4_scaffold_7-int 8765 12785" /mobile_element_type="retrotransposon:LTR/Copia" gene 14390437..14391230 /locus_tag="TCM_023471" /note="dbxref CacaoGD:Thecc1EG023471" mRNA join(14390437..14390626,14390717..14391230) /locus_tag="TCM_023471" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027849t1" /inference="similar to AA sequence:Phytozome:Glyma18g33480.1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.53 coverage" CDS join(14390476..14390626,14390717..14390988) /locus_tag="TCM_023471" /note="paralog of Thecc1EG027849t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08631.1" /db_xref="Phytozome:Glyma18g33480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AJ88" /translation="MELLKDYGCTILHHPGKAKGIVDALSQKSMGSMAHIAMERRSIV QGLQDMDAQARDTFAMTILGSLGEHVFEFDGLLRYGSQIYKSDLDGLKEEILEEAHVT AYAVHPRATKMYHDLRSVYWWQRLKKDVKGYVSRCSVC" mobile_element 14392347..14393522 /note="source:INTACT160_F4_scaffold_7-int 13363 14547" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14392957..14393605 /note="source:scaffold_2_CACTA_0263 6017 6662" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14395125..14395388 /note="source:scaffold_2_CACTA_0263 6654 6916" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14395390..14395783 /note="source:CACAO_M_S_E109853_F60_scaffold_9 4818 5192" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14395784..14398453 /note="source:CACAO_M_E36423_F345_scaffold_5 1 2670" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14398369..14398466 /note="source:scaffold_7_CACTA_0789 16203 16300" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14398454..14399492 /note="source:CACAO_M_S_E109853_F60_scaffold_9 14997 16006" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14399494..14403393 /note="source:CACAO_M_E23991_F4_scaffold_4 6132 9874" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14403394..14403581) /note="source:CACAO_M_E69217_F98_scaffold_9 1303 1461" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14403450..14405586 /note="source:CACAO_M_S_E109853_F60_scaffold_9 6509 8132" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14405587..14406686) /note="source:INTACT39F_F22_scaffold_1-int 18326 19405" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14406685..14413019 /note="source:CACAO_M_S_E109853_F60_scaffold_9 4819 14445" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14413020..14413121 /note="source:scaffold_5_CACTA_0599 12289 12391" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14413422..14414287 /note="source:CACAO_M_S_E64023_F13_scaffold_5 5813 6694" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14414288..14422371) /note="source:CACAO_M_E34534_F369_scaffold_5 2303 10481" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14422346..14424709) /note="source:INTACT95_F143_scaffold_9-int 5056 7433" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14435519..14435894) /note="source:CACAO_M_E36310_F7_scaffold_5 261 649" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14435908..14436566 /note="source:INTACT191F_F350_scaffold_3-int 2071 2746" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14436534..14438671 /note="source:CACAO_M_E65798_F143_scaffold_9 863 2989" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14439062..14439747 /note="source:scaffold_6_CACTA_0712 2 645" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14439748..14440680) /note="source:INTACT1432F_F101_scaffold_9-int 15923 16864" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(14441484..14442266) /note="source:scaffold_5_CACTA_0611 756 1527" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14443391..14443574 /note="source:scaffold_6_CACTA_0712 405 762" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14443677..14453567 /note="source:scaffold_5_CACTA_0613 926 10867" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14454070..14454996) /note="source:INTACT764_F80_scaffold_4-int 2002 2928" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14454619..14456680 /note="source:CACAO_M_E49857_F85_scaffold_7 21390 23455" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14454976..14456936) /note="source:CACAO_M_E10449_F80_scaffold_2 1 1961" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(14457864..14466072) /locus_tag="TCM_023478" /note="dbxref CacaoGD:Thecc1EG023478" mRNA complement(join(14457864..14457925,14458065..14458539, 14458705..14459437,14460464..14460546,14460640..14460806, 14462354..14462498,14465736..14466072)) /locus_tag="TCM_023478" /product="Zinc-binding dehydrogenase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Sb08g007240.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019792t1" /inference="similar to AA sequence:Phytozome:GSVIVT01038224001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:PASA:2:TSA:puevd3b022713t1a2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13802t2" mRNA complement(join(14457864..14457925,14458065..14458539, 14458705..14459437,14460464..14460546,14460640..14460806, 14462321..14462498,14465736..14466063)) /locus_tag="TCM_023478" /product="Zinc-binding dehydrogenase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Sb08g007240.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019792t1" /inference="similar to AA sequence:Phytozome:GSVIVT01038224001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13802t2" CDS complement(join(14459059..14459437,14460464..14460546, 14460640..14460806,14462354..14462498,14465736..14465969)) /locus_tag="TCM_023478" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG019792t1" /codon_start=1 /product="Zinc-binding dehydrogenase family protein isoform 2" /protein_id="EOY08633.1" /db_xref="Phytozome:GSVIVT01038224001" /db_xref="TAIR:AT5G16990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LDI4" /translation="MVGNKQVVLNNYVQGWPKEGDFRLQCTETEIESIPNGSEAVLLK NLYLACDPYMRHRMCDNHISQPGTIFKSSFTPGSVLVGYGVSRVIQSTHPDFKEGDHV WGLTGWEEYTMIPNPEKLFKITYTGVPGIAAHVGFFNLCSPKEGETVYVSTASGGVGQ LVGQFAKMMGCYVVGSTSTKEKVDLAKDKFGFSDAFNYKEEHDLNAALTRYFPEGIDI YFDNVGGRMLDEVLLHMKAHGRVAACGMISQYNLEEPEGIRNLFSMIPRRVEIKGYIE TDFHHIYPQYHELAIKYLKEGSLDYVEDVAEGLENAASAYVGIFHGRNVGKQIIRVAS E" CDS complement(join(14459059..14459437,14460464..14460546, 14460640..14460806,14462321..14462498,14465736..14465969)) /locus_tag="TCM_023478" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG019792t1" /codon_start=1 /product="Zinc-binding dehydrogenase family protein isoform 1" /protein_id="EOY08632.1" /db_xref="Phytozome:GSVIVT01038224001" /db_xref="TAIR:AT5G16990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LDI4" /translation="MVGNKQVVLNNYVQGWPKEGDFRLQCTETEIESIPNGSEAVLLK NLYLACDPYMRHRMCDNHISQPGTIFKSSFTPGSVLVGYGVSRVIQSTHPDFKEGDHV WGLTGWEEYTMIPNPEKLFKITYTGVPLSYYLGVLGVPGIAAHVGFFNLCSPKEGETV YVSTASGGVGQLVGQFAKMMGCYVVGSTSTKEKVDLAKDKFGFSDAFNYKEEHDLNAA LTRYFPEGIDIYFDNVGGRMLDEVLLHMKAHGRVAACGMISQYNLEEPEGIRNLFSMI PRRVEIKGYIETDFHHIYPQYHELAIKYLKEGSLDYVEDVAEGLENAASAYVGIFHGR NVGKQIIRVASE" mobile_element 14469092..14469102 /note="source:CACAO_on_S_E58_scaffold_2 1930 1940" /mobile_element_type="transposon:TIR/Mutator" mobile_element 14469103..14475616 /note="source:CACAO_M_E36454_F98_scaffold_5 1 6514" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14475717..14479872 /note="source:CACAO_M_E36454_F98_scaffold_5 6515 10670" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14481533..14491432) /note="source:INTACT762_F78_scaffold_4-int 43 9986" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14491433..14494419) /note="source:CACAO_M_E52905_F288_scaffold_8 1 2982" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14494421..14494477) /note="source:CACAO_M_E13504_F78_scaffold_3 1 46" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(14504513..14507253) /locus_tag="TCM_023481" /note="dbxref CacaoGD:Thecc1EG023481" mRNA complement(join(14504513..14504920,14506056..14506308, 14507246..14507253)) /locus_tag="TCM_023481" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017869t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(14504864..14504920,14506056..14506292)) /locus_tag="TCM_023481" /note="paralog of Thecc1EG017869t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08634.1" /translation="MMMVREMDGDTVRLCARCGGMHMSWVRWDVRLCAQCGGIHISWV RWDVRLCARCGEMNMSWVRWDVRLCARRGGMHMSWTMAPAMSNSPSVTLTFST" mobile_element complement(14505371..14505491) /note="source:CACAO_M_S_E85177_F5_scaffold_7 20143 20262" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14507410..14507729 /note="source:scaffold_2_CACTA_0260 26 345" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14511952..14514613 /note="source:CACAO_M_E36468_F369_scaffold_5 1 2662" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14515546..14515600 /note="source:CACAO_M_S_E5046_F335_scaffold_1 15495 15550" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14517243..14524435 /note="source:INTACT94_F142_scaffold_5-int 1 13795" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14524303..14524456) /note="source:CACAO_M_S_E84415_F15_scaffold_6 7329 7483" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14526021..14527225 /note="source:INTACT453_F4_scaffold_9-int 16946 18123" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14527666..14527782 /note="source:CACAO_M_S_E5285_F300_scaffold_1 19273 19384" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14528904..14539510 /note="source:CACAO_M_S_E38262_F319_scaffold_4 1 10722" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14541123..14544105) /note="source:CACAO_M_S_E121173_F7_scaffold_10 1 2989" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14542439..14544112 /note="source:CACAO_M_S_E31774_F7_scaffold_3 1331 3006" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14544105..14544690 /note="source:CACAO_M_E35188_F7_scaffold_5 6163 6773" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14544695..14547792 /note="source:CACAO_M_E86361_F7_scaffold_15 9439 12582" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14548965..14549020 /note="source:CACAO_M_E58819_F24_scaffold_9 15341 15400" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14551993..14552162) /note="source:INTACT738_F9_scaffold_7-int 1243 1408" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14558307..14561249 /note="source:CACAO_M_E36484_F44_scaffold_5 1 2943" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14563429..14563521 /note="source:CACAO_M_S_E14932_F233_scaffold_2 10964 11057" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14564191..14567013 /note="source:CACAO_M_E36485_F15_scaffold_5 1 2823" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14567356..14567474 /note="source:CACAO_M_E1841_F5_scaffold_1 3083 3199" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14568066..14575147) /note="source:CACAO_M_S_E84376_F22_scaffold_6 8836 15989" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14575148..14576961 /note="source:INTACT280_F60_scaffold_5-int 9581 10530" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14576962..14577178 /note="source:INTACT738_F9_scaffold_7-int 1208 1406" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14578675..14580195) /note="source:CACAO_M_E85128_F9_scaffold_10 720 2170" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14581679..14589515 /note="source:CACAO_M_E36498_F9_scaffold_5 1 7837" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14592020..14595023 /note="source:CACAO_M_E36501_F89_scaffold_5 1 3004" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 14596410..14602678 /locus_tag="TCM_023487" /note="dbxref CacaoGD:Thecc1EG023487" mRNA join(14596410..14597103,14599833..14600170, 14602504..14602678) /locus_tag="TCM_023487" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024101t1" /note="quality class is weak-utrpoor, express is none, homology is paralog medium, intron is none, protein is utrpoor_complete" CDS join(14596921..14597103,14599833..14600024) /locus_tag="TCM_023487" /note="paralog of Thecc1EG024101t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08635.1" /translation="MVLNFCYSSATAMVSWPCPWHSSLKKMYGAPFQLNTVAMVFPTL QRSINFKHNFHPELGKVYGVTTRPLTAEQLGITCYKMPLPIHGGPYKPMITGLTDPCL QKGKKRGVSLTNSVIIDSVSRA" mobile_element 14601171..14601423 /note="source:scaffold_5_CACTA_0596 3270 3527" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14602075..14602132) /note="source:CACAO_M_S_E122138_F207_scaffold_10 7193 7248" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14605586..14608735) /note="source:CACAO_M_S_E99975_F143_scaffold_9 6407 9556" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14608769..14608855) /note="source:INTACT1209F_F371_scaffold_6-int 4964 5052" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14608786..14609180 /note="source:CACAO_M_E52760_F33_scaffold_8 4492 4886" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14608847..14614031) /note="source:CACAO_M_S_E99975_F143_scaffold_9 1280 6444" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14614015..14614030 /note="source:CACAO_M_S_E5285_F300_scaffold_1 13568 13582" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14614031..14617371 /note="source:CACAO_M_S_E64699_F85_scaffold_5 1 6578" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14617361..14618656) /note="source:CACAO_M_E56982_F143_scaffold_8 1 1299" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(14623999..14625179) /locus_tag="TCM_023490" /note="dbxref CacaoGD:Thecc1EG023490" mRNA complement(join(14623999..14624461,14624720..14625179)) /locus_tag="TCM_023490" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc313t2" CDS complement(14624014..14624175) /locus_tag="TCM_023490" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08636.1" /translation="MFGSQTHSYFFGPMPTMVASSPKVGFYWVFVLIGSLFPSCLLYC FLLRSWEET" gene 14625172..14634054 /locus_tag="TCM_023491" /note="dbxref CacaoGD:Thecc1EG023491" mRNA join(14625172..14625617,14625895..14626066, 14627784..14627855,14627965..14628156,14628434..14628508, 14628619..14628678,14629288..14629365,14629497..14629548, 14630259..14630351,14630460..14630530,14632526..14632774, 14633323..14634054) /locus_tag="TCM_023491" /product="BZIP domain class transcription factor isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Sb01g037050.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023492t3" /inference="similar to AA sequence:frave:gene21882" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00083t00004" mRNA join(14625464..14625617,14625895..14626066, 14627784..14627855,14627965..14628156,14628434..14628508, 14628619..14628678,14629288..14629365,14629497..14629548, 14630259..14630322,14630413..14630530,14632526..14632774, 14633323..14633856) /locus_tag="TCM_023491" /product="BZIP domain class transcription factor isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Sb01g037050.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023492t3" /inference="similar to AA sequence:Phytozome:Glyma15g37220.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00083t00003; inference alignment:Newbler:10:TSA:cgbaB_g00083t00004" mRNA join(14625464..14625617,14625895..14626066, 14627784..14627855,14627965..14628156,14628619..14628678, 14629288..14629365,14629497..14629548,14630259..14630530, 14632526..14632774,14633323..14633856) /locus_tag="TCM_023491" /product="Transcription factor HBP-1b(c1) isoform 8" /inference="alignment:exonerate- protein:2:Phytozome:Sb01g037050.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023492t3" /inference="similar to AA sequence:frave:gene21882" /note="transcript variant 8; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00083t00002; inference alignment:Newbler:10:TSA:cgbaB_g00083t00004" mRNA join(14625464..14625617,14625895..14626066, 14627784..14627855,14627965..14628156,14628619..14628678, 14629288..14629365,14629497..14629548,14630259..14630351, 14630460..14630530,14632526..14632774,14633323..14633856) /locus_tag="TCM_023491" /product="BZIP domain class transcription factor isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:Sb01g037050.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023492t3" /inference="similar to AA sequence:frave:gene21882" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00083t00007; inference alignment:Newbler:10:TSA:cgbaB_g00083t00004" mRNA join(14625464..14625617,14625895..14626066, 14627784..14627855,14627965..14628156,14628619..14628678, 14629288..14629365,14629497..14629548,14630259..14630322, 14630413..14630530,14632526..14632774,14633323..14633856) /locus_tag="TCM_023491" /product="BZIP domain class transcription factor isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:Sb01g037050.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023492t3" /inference="similar to AA sequence:frave:gene21882" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00083t00005; inference alignment:Newbler:10:TSA:cgbaB_g00083t00004" mRNA join(14625474..14625617,14625895..14626066, 14627784..14627855,14627965..14628156,14628434..14628508, 14628619..14628678,14629288..14629365,14629497..14629548, 14630259..14630530,14632526..14632774,14633323..14633954) /locus_tag="TCM_023491" /product="Transcription factor HBP-1b(c1) isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Sb01g037050.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023492t3" /inference="similar to AA sequence:frave:gene21882" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4534t4; alternateUTRof:Thecc1EG023491t3; inference alignment:Newbler:10:TSA:cgbaB_g00083t00004" mRNA join(14625509..14625617,14625901..14626066, 14627059..14627137,14627512..14627531,14627784..14627855, 14627965..14628156,14628434..14628508,14628619..14628678, 14629288..14629365,14629497..14629548,14630259..14630530, 14632526..14632774,14633323..14633855) /locus_tag="TCM_023491" /product="Transcription factor HBP-1b(c1) isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Sb01g037050.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023492t3" /inference="similar to AA sequence:frave:gene21882" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00118t00011; alternateUTRof:Thecc1EG023491t3; inference alignment:Newbler:10:TSA:cgbaB_g00083t00004" gene 14625520..15163453 /locus_tag="TCM_023492" /note="dbxref CacaoGD:Thecc1EG023492" mRNA join(14625520..14625617,15154950..15155137, 15156143..15156246,15156880..15156950,15157060..15157251, 15157509..15157583,15157694..15157753,15158365..15158442, 15158568..15158619,15159508..15159779,15161691..15161939, 15162439..15162766,15163109..15163453) /locus_tag="TCM_023492" /product="TGACG motif-binding factor 6 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s03590.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023491t7" /inference="similar to AA sequence:Phytozome:POPTR_0006s03720.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00118t00013; inference alignment:Newbler:10:TSA:cgbaL_g00118t00013" mRNA join(14625585..14625626,14625895..14626066, 14627784..14627855,14627965..14628156,14628434..14628508, 14628619..14628678,14629288..14629365,14629497..14629548, 14630259..14630530,14632526..14632774,14633323..14633655) /locus_tag="TCM_023491" /product="Transcription factor HBP-1b(c1) isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Sb01g037050.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023492t3" /inference="similar to AA sequence:frave:gene21882" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc320t16; inference alignment:Newbler:10:TSA:cgbaB_g00083t00004" CDS join(14628094..14628156,14628434..14628508, 14628619..14628678,14629288..14629365,14629497..14629548, 14630259..14630530,14632526..14632774,14633323..14633469) /locus_tag="TCM_023491" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene21882; paralog of Thecc1EG023492t3" /codon_start=1 /product="Transcription factor HBP-1b(c1) isoform 3" /protein_id="EOY08639.1" /db_xref="TAIR:AT3G12250.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q41558" /translation="MADASPRTDTSTDDTDEKNQRFERGQTNAIVASDSSDRSKDKTD QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQ SHSMSGNGALAFDVEYARWLEEHNRQINELRAAVNSHAGDTELRTIVDNVTAHFDDIF RLKGIAAKADVFHVLSGMWKTPAERCFLWIGGFRSSELLKLLANQLEPLTEQQFMGIH NLQQSSQQAEDALSQGMEALQQSLAETLTNGSPGPSGSSGNVANYMGQMAMAMGKLGT LEGFVRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE" CDS join(14628094..14628156,14628434..14628508, 14628619..14628678,14629288..14629365,14629497..14629548, 14630259..14630530,14632526..14632774,14633323..14633469) /locus_tag="TCM_023491" /note="encoded by transcript variant 4; alternatively spliced; dbxref frave:gene21882; paralog of Thecc1EG023492t3" /codon_start=1 /product="Transcription factor HBP-1b(c1) isoform 3" /protein_id="EOY08640.1" /db_xref="TAIR:AT3G12250.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q41558" /translation="MADASPRTDTSTDDTDEKNQRFERGQTNAIVASDSSDRSKDKTD QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQ SHSMSGNGALAFDVEYARWLEEHNRQINELRAAVNSHAGDTELRTIVDNVTAHFDDIF RLKGIAAKADVFHVLSGMWKTPAERCFLWIGGFRSSELLKLLANQLEPLTEQQFMGIH NLQQSSQQAEDALSQGMEALQQSLAETLTNGSPGPSGSSGNVANYMGQMAMAMGKLGT LEGFVRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE" CDS join(14628094..14628156,14628434..14628508, 14628619..14628678,14629288..14629365,14629497..14629548, 14630259..14630530,14632526..14632774,14633323..14633469) /locus_tag="TCM_023491" /note="encoded by transcript variant 7; alternatively spliced; dbxref frave:gene21882; paralog of Thecc1EG023492t3" /codon_start=1 /product="Transcription factor HBP-1b(c1) isoform 3" /protein_id="EOY08643.1" /db_xref="TAIR:AT3G12250.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q41558" /translation="MADASPRTDTSTDDTDEKNQRFERGQTNAIVASDSSDRSKDKTD QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQ SHSMSGNGALAFDVEYARWLEEHNRQINELRAAVNSHAGDTELRTIVDNVTAHFDDIF RLKGIAAKADVFHVLSGMWKTPAERCFLWIGGFRSSELLKLLANQLEPLTEQQFMGIH NLQQSSQQAEDALSQGMEALQQSLAETLTNGSPGPSGSSGNVANYMGQMAMAMGKLGT LEGFVRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE" CDS join(14628094..14628156,14628434..14628508, 14628619..14628678,14629288..14629365,14629497..14629548, 14630259..14630351,14630460..14630530,14632526..14632774, 14633323..14633469) /locus_tag="TCM_023491" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene21882; paralog of Thecc1EG023492t3" /codon_start=1 /product="BZIP domain class transcription factor isoform 1" /protein_id="EOY08637.1" /db_xref="TAIR:AT3G12250.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D9ZIQ7" /translation="MADASPRTDTSTDDTDEKNQRFERGQTNAIVASDSSDRSKDKTD QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQ SHSMSGNGALAFDVEYARWLEEHNRQINELRAAVNSHAGMWKTPAERCFLWIGGFRSS ELLKLLANQLEPLTEQQFMGIHNLQQSSQQAEDALSQGMEALQQSLAETLTNGSPGPS GSSGNVANYMGQMAMAMGKLGTLEGFVRQADNLRQQTLQQMHRILTTRQSARALLAIN DYFSRLRALSSLWLARPRE" CDS join(14628094..14628156,14628434..14628508, 14628619..14628678,14629288..14629365,14629497..14629548, 14630259..14630322,14630413..14630530,14632526..14632774, 14633323..14633469) /locus_tag="TCM_023491" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG023492t3" /codon_start=1 /product="BZIP domain class transcription factor isoform 2" /protein_id="EOY08638.1" /db_xref="Phytozome:Glyma15g37220.1" /db_xref="TAIR:AT3G12250.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D9ZIQ7" /translation="MADASPRTDTSTDDTDEKNQRFERGQTNAIVASDSSDRSKDKTD QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQ SHSMSGNGALAFDVEYARWLEEHNRQINELKGIAAKADVFHVLSGMWKTPAERCFLWI GGFRSSELLKLLANQLEPLTEQQFMGIHNLQQSSQQAEDALSQGMEALQQSLAETLTN GSPGPSGSSGNVANYMGQMAMAMGKLGTLEGFVRQADNLRQQTLQQMHRILTTRQSAR ALLAINDYFSRLRALSSLWLARPRE" CDS join(14628094..14628156,14628619..14628678, 14629288..14629365,14629497..14629548,14630259..14630530, 14632526..14632774,14633323..14633469) /locus_tag="TCM_023491" /note="encoded by transcript variant 8; alternatively spliced; dbxref frave:gene21882; paralog of Thecc1EG023492t3" /codon_start=1 /product="Transcription factor HBP-1b(c1) isoform 8" /protein_id="EOY08644.1" /db_xref="TAIR:AT3G12250.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q41558" /translation="MADASPRTDTSTDDTDEKNQRTLRRLAQNREAARKSRLRKKAYV QQLESSRLKLTQLEQELQRARQQGIFISSSGDQSHSMSGNGALAFDVEYARWLEEHNR QINELRAAVNSHAGDTELRTIVDNVTAHFDDIFRLKGIAAKADVFHVLSGMWKTPAER CFLWIGGFRSSELLKLLANQLEPLTEQQFMGIHNLQQSSQQAEDALSQGMEALQQSLA ETLTNGSPGPSGSSGNVANYMGQMAMAMGKLGTLEGFVRQADNLRQQTLQQMHRILTT RQSARALLAINDYFSRLRALSSLWLARPRE" CDS join(14628094..14628156,14628619..14628678, 14629288..14629365,14629497..14629548,14630259..14630351, 14630460..14630530,14632526..14632774,14633323..14633469) /locus_tag="TCM_023491" /note="encoded by transcript variant 6; alternatively spliced; dbxref frave:gene21882; paralog of Thecc1EG023492t3" /codon_start=1 /product="BZIP domain class transcription factor isoform 6" /protein_id="EOY08642.1" /db_xref="TAIR:AT1G68640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D9ZIQ7" /translation="MADASPRTDTSTDDTDEKNQRTLRRLAQNREAARKSRLRKKAYV QQLESSRLKLTQLEQELQRARQQGIFISSSGDQSHSMSGNGALAFDVEYARWLEEHNR QINELRAAVNSHAGMWKTPAERCFLWIGGFRSSELLKLLANQLEPLTEQQFMGIHNLQ QSSQQAEDALSQGMEALQQSLAETLTNGSPGPSGSSGNVANYMGQMAMAMGKLGTLEG FVRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE" CDS join(14628094..14628156,14628619..14628678, 14629288..14629365,14629497..14629548,14630259..14630322, 14630413..14630530,14632526..14632774,14633323..14633469) /locus_tag="TCM_023491" /note="encoded by transcript variant 5; alternatively spliced; dbxref frave:gene21882; paralog of Thecc1EG023492t3" /codon_start=1 /product="BZIP domain class transcription factor isoform 5" /protein_id="EOY08641.1" /db_xref="TAIR:AT3G12250.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D9ZIQ7" /translation="MADASPRTDTSTDDTDEKNQRTLRRLAQNREAARKSRLRKKAYV QQLESSRLKLTQLEQELQRARQQGIFISSSGDQSHSMSGNGALAFDVEYARWLEEHNR QINELKGIAAKADVFHVLSGMWKTPAERCFLWIGGFRSSELLKLLANQLEPLTEQQFM GIHNLQQSSQQAEDALSQGMEALQQSLAETLTNGSPGPSGSSGNVANYMGQMAMAMGK LGTLEGFVRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE " mobile_element complement(14637138..14640138) /note="source:CACAO_M_S_E50813_F7_scaffold_4 1 3006" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14637149..14643441 /note="source:CACAO_M_S_E109876_F7_scaffold_9 4 6120" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14643442..14644630) /note="source:CACAO_M_S_E429291_F7_scaffold_89 1793 3000" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14644635..14647401 /note="source:CACAO_M_E36509_F87_scaffold_5 1 2767" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14647402..14649351) /note="source:CACAO_M_S_E101805_F5_scaffold_9 3510 6563" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14649373..14652234 /note="source:CACAO_M_S_E109876_F7_scaffold_9 6115 8979" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14652245..14652711 /note="source:CACAO_M_E12903_F7_scaffold_3 2580 3011" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14657768..14658169 /note="source:scaffold_5_CACTA_0596 410 801" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14658321..14658502 /note="source:scaffold_5_CACTA_0596 12464 12645" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14659601..14659975) /note="source:INTACT39F_F22_scaffold_1-int 3828 4166" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14671211..14671294 /note="source:CACAO_M_E5899_F5_scaffold_2 22606 22691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14671553..14671647) /note="source:INTACT103_F9_scaffold_4-int 1304 1397" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14673624..14676604) /note="source:CACAO_M_S_E118981_F7_scaffold_9 1 3000" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14677034..14677175 /note="source:CACAO_M_E5899_F5_scaffold_2 21704 21846" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14677271..14677958 /note="source:CACAO_M_E5899_F5_scaffold_2 21996 22689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14677946..14678011) /note="source:INTACT479_F81_scaffold_2-int 5251 5317" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14678215..14678327) /note="source:CACAO_M_E14312_F12_scaffold_3 11193 11305" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14678583..14681520 /note="source:CACAO_M_S_E119414_F15_scaffold_9 1 2974" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14682720..14684175 /note="source:CACAO_M_S_E86639_F7_scaffold_7 5332 6772" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14684116..14684357 /note="source:scaffold_3_CACTA_0382 6180 6429" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14687051..14687702 /note="source:CACAO_M_E5899_F5_scaffold_2 22062 22689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14689623..14691563 /note="source:CACAO_M_E5899_F5_scaffold_2 11195 13112" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14691553..14695508) /note="source:INTACT338_F201_scaffold_2-int 1 3964" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14696064..14697128) /note="source:CACAO_M_S_E14847_F12_scaffold_2 12121 13203" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14700209..14700822) /note="source:scaffold_2_CACTA_0260 3898 4514" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14703208..14703315) /note="source:INTACT103_F9_scaffold_4-int 16559 16643" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14704385..14704466 /note="source:INTACT135F_F90_scaffold_2-int 16984 17068" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14704386..14704453) /note="source:CACAO_M_E69551_F193_scaffold_9 267 336" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14706343..14706560 /note="source:CACAO_M_E14113_F106_scaffold_3 5278 5494" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14706952..14707263 /note="source:INTACT135F_F90_scaffold_2-int 17050 17359" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14707026..14707417 /note="source:INTACT167_F5_scaffold_2-int 14561 14951" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14708600..14709440) /note="source:INTACT649F_F368_scaffold_5-int 6023 6865" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14710930..14711432 /note="source:INTACT537_F22_scaffold_2-int 12688 13186" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14711567..14711625) /note="source:CACAO_M_E5899_F5_scaffold_2 22630 22689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14713478..14713583 /note="source:CACAO_M_E86305_F7_scaffold_15 7160 7274" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14713571..14714284 /note="source:CACAO_M_E47740_F12_scaffold_6 6011 6720" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14714203..14714295) /note="source:CACAO_M_S_E33139_F368_scaffold_4 6149 6242" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14716807..14717900) /note="source:CACAO_M_E52564_F14_scaffold_7 8975 10087" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14722239..14723721 /note="source:CACAO_M_S_E64608_F12_scaffold_5 4130 5570" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14725194..14728276 /note="source:CACAO_M_S_E54559_F42_scaffold_5 1 3083" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14731560..14732389) /note="source:CACAO_M_S_E52921_F60_scaffold_5 18655 19491" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14732425..14735182 /note="source:CACAO_M_E36541_F15_scaffold_5 1 2741" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14735235..14735308 /note="source:CACAO_M_E12463_F12_scaffold_3 4537 4610" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14737268..14741799 /note="source:INTACT224_F176_scaffold_8-int 4398 8856" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14741800..14742336 /note="source:INTACT170_F12_scaffold_5-int 1179 1715" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14742437..14742623 /note="source:CACAO_M_E1841_F5_scaffold_1 10776 10965" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14742484..14742627) /note="source:INTACT41F_F338_scaffold_1-int 8704 8847" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14742629..14742748 /note="source:INTACT597_F267_scaffold_2-int 14007 14126" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14742737..14744860 /note="source:INTACT224_F176_scaffold_8-int 4744 6823" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14744860..14750005 /note="source:INTACT224_F176_scaffold_8-int 4636 12409" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14755268..14755311) /note="source:CACAO_M_E5702_F90_scaffold_2 3181 3222" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14755314..14763174 /note="source:INTACT196F_F12_scaffold_3-int 1 7855" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14763134..14763243) /note="source:CACAO_M_E11054_F12_scaffold_2 13448 13551" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14763171..14764333 /note="source:INTACT124_F12_scaffold_10-int 3460 4658" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14764447..14764680 /note="source:INTACT296_F13_scaffold_9-int 12928 13162" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14764477..14765885) /note="source:CACAO_M_E11054_F12_scaffold_2 7421 8812" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14765885..14768225) /note="source:INTACT30F_F12_scaffold_1-int 3 2328" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14768226..14773604 /note="source:INTACT595_F266_scaffold_7-int 26 5408" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14773593..14775020 /note="source:INTACT595_F266_scaffold_7-int 6584 8018" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14775020..14779899) /note="source:INTACT1373F_F385_scaffold_8-int 4514 9474" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 14780102..14784217 /locus_tag="TCM_023502" /note="dbxref CacaoGD:Thecc1EG023502" mRNA join(14780102..14780242,14780475..14780538, 14780948..14781032,14781749..14781821,14782317..14782480, 14783341..14784217) /locus_tag="TCM_023502" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.38 coverage" CDS join(14780195..14780242,14780475..14780538, 14780948..14781032,14781749..14781821,14782317..14782480, 14783341..14783587) /locus_tag="TCM_023502" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08648.1" /translation="MSSRIVCIGLFESFSKISDSILIATSVTDTSVRFSFVGYARLGP CADLDPSKKWDVTNTHVIQLLMDCGISPACDSCLQYFDATHSRILQINRPHSCVVKVV QQQIDSAFSRFPFAMSLCCVSHKLPLMVGYGYVCRHDVPYELISEVEEDLERFLEDME CICSALGCFTHRAMELVGFRLKDSANTWFITLKGSRPLGSLPITWEEFVQTFLDWFLP KNVKNIKA" mobile_element complement(14780924..14781006) /note="source:CACAO_M_E1841_F5_scaffold_1 3101 3178" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14790862..14791144 /note="source:CACAO_M_S_E7818_F60_scaffold_2 5388 5674" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14791465..14791996 /note="source:CACAO_M_E1841_F5_scaffold_1 9103 9648" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14792803..14793397 /note="source:CACAO_M_E1841_F5_scaffold_1 15889 16508" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14793391..14793449) /note="source:scaffold_3_CACTA_0388 8074 8132" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14794303..14795377) /note="source:CACAO_M_E5326_F22_scaffold_2 24565 25637" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14797244..14798478 /note="source:INTACT160_F4_scaffold_7-int 12860 14102" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14798360..14798595 /note="source:scaffold_5_CACTA_0599 11269 11501" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14798596..14798750 /note="source:INTACT242_F12_scaffold_1-int 1776 1935" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14798757..14807699 /note="source:CACAO_M_E65050_F7_scaffold_9 7242 16172" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14807689..14808930) /note="source:CACAO_M_E22733_F54_scaffold_3 1 1240" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14809265..14812080 /note="source:INTACT242_F12_scaffold_1-int 1899 4548" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14812084..14812857 /note="source:INTACT410F_F357_scaffold_4-int 2604 3378" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14814067..14814219 /note="source:INTACT242_F12_scaffold_1-int 1778 1935" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14814571..14815152 /note="source:INTACT242_F12_scaffold_1-int 1927 2511" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14815263..14817311 /note="source:INTACT242_F12_scaffold_1-int 2463 4549" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14817311..14822551 /note="source:INTACT160_F4_scaffold_7-int 7619 14931" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14822530..14822551) /note="source:CACAO_M_E70891_F369_scaffold_10 12162 12189" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14822552..14825283 /note="source:CACAO_M_E36570_F15_scaffold_5 1 2732" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14825286..14827646 /note="source:INTACT160_F4_scaffold_7-int 12078 14040" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14827643..14827982 /note="source:INTACT642F_F365_scaffold_5-int 5907 6271" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14829768..14831282) /note="source:INTACT126_F14_scaffold_3-int 3155 5039" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14832383..14832852 /note="source:CACAO_M_E11098_F15_scaffold_2 14700 15171" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14832853..14835712 /note="source:CACAO_M_E36573_F230_scaffold_5 1 2860" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14835713..14836275 /note="source:CACAO_M_E85026_F215_scaffold_10 466 1032" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14837677..14848950 /note="source:CACAO_M_E36574_F4_scaffold_5 1 11274" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14852210..14853190) /note="source:CACAO_M_S_E89272_F5_scaffold_8 7253 8225" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14853330..14855068 /note="source:CACAO_M_E516_F5_scaffold_1 250 1977" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14855069..14855818 /note="source:CACAO_M_E3248_F5_scaffold_1 1653 2349" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14855165..14855993) /note="source:CACAO_M_E5899_F5_scaffold_2 21807 22603" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14856339..14856835 /note="source:CACAO_M_E3248_F5_scaffold_1 2831 3323" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14856822..14857325 /note="source:CACAO_M_E33933_F9_scaffold_4 23581 24088" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14857326..14860027 /note="source:CACAO_M_S_E17694_F231_scaffold_3 1 2737" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14860028..14861584 /note="source:CACAO_M_E85026_F215_scaffold_10 495 2065" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14861588..14862057 /note="source:CACAO_M_E35674_F13_scaffold_5 10897 11362" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14862160..14863010 /note="source:CACAO_M_E59600_F12_scaffold_9 3222 4073" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14863000..14866645) /note="source:CACAO_M_E43175_F215_scaffold_5 1 3714" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14866646..14867040 /note="source:CACAO_M_S_E4534_F4_scaffold_1 3538 3952" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14866776..14867126) /note="source:CACAO_M_S_E4591_F5_scaffold_1 18569 18943" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14867175..14867610) /note="source:CACAO_M_S_E4591_F5_scaffold_1 18139 18566" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14867675..14867785) /note="source:INTACT120_F22_scaffold_3-int 7027 7153" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14867774..14871080 /note="source:CACAO_M_E516_F5_scaffold_1 1973 5279" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14871020..14871080) /note="source:INTACT405F_F91_scaffold_4-int 8186 8244" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14871081..14874027 /note="source:CACAO_M_E36584_F72_scaffold_5 1 2947" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14874028..14877997) /note="source:CACAO_M_E42809_F5_scaffold_5 860 4882" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14875623..14878643 /note="source:CACAO_M_E516_F5_scaffold_1 6691 9796" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14878710..14879258) /note="source:CACAO_M_S_E89272_F5_scaffold_8 6724 7258" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14880198..14880814 /note="source:CACAO_M_E84368_F4_scaffold_10 4505 5132" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14880815..14890883 /note="source:INTACT781_F89_scaffold_5-int 1 10069" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14890884..14891484 /note="source:scaffold_8_CACTA_0859 1049 1628" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14890885..14891684 /note="source:CACAO_M_E49885_F60_scaffold_7 644 1516" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(14890939..14913348) /locus_tag="TCM_023509" /note="dbxref CacaoGD:Thecc1EG023509" mRNA complement(join(14890939..14890977,14895952..14896237, 14896348..14896405,14896825..14897328,14897513..14897722, 14898208..14898333,14913250..14913348)) /locus_tag="TCM_023509" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400068410.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043904t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.44 coverage" mobile_element 14891485..14891693 /note="source:CACAO_M_E84368_F4_scaffold_10 12197 13013" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14891690..14892055) /note="source:INTACT160_F4_scaffold_7-int 14472 14934" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(14892056..14893275) /note="source:scaffold_5_CACTA_0599 10717 11951" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14893276..14897523) /note="source:INTACT160_F4_scaffold_7-int 9081 14471" /mobile_element_type="retrotransposon:LTR/Copia" CDS complement(join(14896038..14896237,14896348..14896405, 14896825..14897328,14897513..14897722,14898208..14898270)) /locus_tag="TCM_023509" /note="paralog of Thecc1EG043904t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08649.1" /translation="MTLRKDHMHLSLGVVEEVDIEEEFTQAFMDRFLPESMRDTKAQE FETLMQAPGMIVSDYDIQFTQLSRYAPYLVQTKRERIKRFIKGLQGHIDRANSTRCFR GGQARVFTLTPQDAHVSNAVVTDNHFICGYEASVLFDPGSTHSFVSSNFMPKLGKHYE YMDEPLVVTTPLEESYVAEYVFRSCVVPIKDRDTWVDLVLMTTLGFDVILGMDWLASC YANVDYYHKLVKFKFLGEPSFLIYGHSSHLVDSVMATITGEISSIKDQGREYTQKPHS VRAYLDIFVVIFLDDILIYSKSWEEHAQHLRIVLQTLPEHKLYAKFSKCAFWLSSVGF LGHIVSKDGV" mobile_element complement(14897514..14900675) /note="source:INTACT160_F4_scaffold_7-int 7619 8685" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 14900709..14900909 /note="source:scaffold_8_CACTA_0859 15626 15826" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14901266..14901379) /note="source:INTACT714_F310_scaffold_9-int 12298 12431" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14901376..14901460) /note="source:scaffold_3_CACTA_0384 5162 5241" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14901568..14904374) /note="source:scaffold_3_CACTA_0384 2261 5054" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14904376..14906401 /note="source:CACAO_M_S_E118655_F231_scaffold_9 1 2030" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14906373..14906419) /note="source:scaffold_4_CACTA_0490 9070 9116" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14913738..14913826) /note="source:scaffold_4_CACTA_0490 13098 13186" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14913748..14914378 /note="source:CACAO_M_E58324_F9_scaffold_9 23436 24071" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14915389..14920181) /note="source:CACAO_M_S_E7105_F60_scaffold_2 4448 9283" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14921066..14921278 /note="source:scaffold_4_CACTA_0491 1 213" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14921275..14921978) /note="source:scaffold_3_CACTA_0384 9615 10335" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14922606..14923480) /note="source:CACAO_M_E58324_F9_scaffold_9 7663 8539" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14925684..14925791) /note="source:INTACT640_F60_scaffold_2-int 6934 7041" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14925688..14925825 /note="source:scaffold_4_CACTA_0491 2460 2595" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14926459..14927622) /note="source:CACAO_M_E43672_F60_scaffold_5 14217 15381" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14927624..14928729) /note="source:CACAO_M_E52239_F256_scaffold_7 23935 25002" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14928728..14929780) /note="source:CACAO_M_S_E15657_F60_scaffold_2 2236 3287" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14929767..14930204 /note="source:INTACT280_F60_scaffold_5-int 418 855" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14930205..14930608 /note="source:CACAO_M_S_E1488_F231_scaffold_1 1 409" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14930609..14932425 /note="source:INTACT616_F52_scaffold_1-int 3519 5363" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14942533..14942681 /note="source:CACAO_M_S_E145951_F15_scaffold_11 1805 1982" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14942572..14942864) /note="source:INTACT905F_F31_scaffold_6-int 1620 1908" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14942647..14943287) /note="source:scaffold_4_CACTA_0490 7576 8215" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14945330..14945648 /note="source:CACAO_M_E294_F134_scaffold_1 9664 9982" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14945750..14947127 /note="source:INTACT1441F_F99_scaffold_9-int 79 1456" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14947228..14949163) /note="source:CACAO_M_E5390_F15_scaffold_2 4444 6379" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14949264..14949754 /note="source:CACAO_M_E69460_F12_scaffold_9 14199 14689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14949722..14949890) /note="source:CACAO_M_E56778_F42_scaffold_8 2919 3087" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14949761..14949894) /note="source:CACAO_Again_on_E14_scaffold_1 9769 9902" /mobile_element_type="transposon:TIR/hAT" mobile_element 14951022..14951429 /note="source:CACAO_M_E22186_F143_scaffold_3 6242 6650" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14951805..14951851 /note="source:CACAO_M_E22186_F143_scaffold_3 8014 8060" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14951853..14952744 /note="source:INTACT95_F143_scaffold_9-int 9407 10298" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14952740..14954359) /note="source:CACAO_M_S_E64654_F231_scaffold_5 665 2304" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14954353..14954768) /note="source:CACAO_M_S_E64654_F231_scaffold_5 1 417" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14954769..14954846) /note="source:CACAO_M_E43672_F60_scaffold_5 19263 19340" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14956073..14959040 /note="source:CACAO_M_S_E54645_F143_scaffold_5 1 2968" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14959896..14960697) /note="source:CACAO_M_S_E83372_F14_scaffold_6 3033 3837" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14962044..14962634 /note="source:CACAO_M_E58601_F7_scaffold_9 7727 8319" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14962630..14963025 /note="source:CACAO_M_E58601_F7_scaffold_9 8422 8818" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14964495..14965351 /note="source:CACAO_M_S_E6055_F310_scaffold_2 765 1626" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14965824..14968773 /note="source:CACAO_M_E36611_F44_scaffold_5 1 2950" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14974385..14974474 /note="source:scaffold_2_CACTA_0261 11423 11512" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14974394..14977088) /note="source:CACAO_M_E1803_F345_scaffold_1 1 2665" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 14984453..14987880 /note="source:CACAO_M_E36614_F323_scaffold_5 1 3428" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14988333..14988717) /note="source:INTACT597_F267_scaffold_2-int 8278 8665" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14988709..14993151) /note="source:scaffold_2_CACTA_0262 6553 10973" /mobile_element_type="transposon:TIR/CACTA" mobile_element 14993142..14993208 /note="source:scaffold_9_CACTA_0927 15215 15279" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(14993205..14993832) /note="source:INTACT170_F12_scaffold_5-int 1179 1808" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14995011..14995091) /note="source:INTACT93F_F345_scaffold_2-int 9908 9984" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(14995240..14995293) /note="source:INTACT93F_F345_scaffold_2-int 16866 16909" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 15001993..15012682 /locus_tag="TCM_023518" /note="dbxref CacaoGD:Thecc1EG023518" mRNA join(15001993..15002578,15002794..15002905, 15012651..15012682) /locus_tag="TCM_023518" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS join(15002477..15002578,15002794..15002904) /locus_tag="TCM_023518" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08650.1" /translation="MICLSCTMVIYSWPHVWCTPSTQHHGHDAPNTVVHVPVIPSPCS CYYDSISPCSSHILHKAMREIDIISS" mobile_element 15004765..15007160 /note="source:CACAO_M_E59770_F143_scaffold_9 550 2949" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15007898..15008926) /note="source:CACAO_M_E58324_F9_scaffold_9 9205 10224" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15008927..15009322) /note="source:INTACT18_F7_scaffold_4-int 10559 10952" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15009302..15010930 /note="source:INTACT95_F143_scaffold_9-int 5787 7403" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15014550..15014561) /note="source:CACAO_M_S_E100312_F82_scaffold_9 6573 6584" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15014562..15017473 /note="source:CACAO_M_E36622_F86_scaffold_5 1 2912" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15018963..15025828) /note="source:CACAO_M_S_E84376_F22_scaffold_6 10577 20864" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15030239..15032840 /note="source:CACAO_M_E36626_F53_scaffold_5 1 2602" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15038005..15038120) /note="source:CACAO_M_S_E100312_F82_scaffold_9 6476 6586" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15038026..15040911 /note="source:INTACT764_F80_scaffold_4-int 5191 8116" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15041685..15042448 /note="source:INTACT764_F80_scaffold_4-int 8036 8799" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15042549..15043205) /note="source:CACAO_M_E12297_F14_scaffold_3 7849 8506" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15044355..15044750 /note="source:CACAO_M_E44425_F33_scaffold_6 17750 18161" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15052122..15052680) /note="source:CACAO_M_E12297_F14_scaffold_3 6337 6897" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15054861..15060588 /note="source:CACAO_M_S_E119127_F246_scaffold_9 1 5773" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15060566..15061369) /note="source:INTACT547_F246_scaffold_8-int 2393 3201" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15061342..15061579 /note="source:CACAO_M_S_E884_F44_scaffold_1 2686 2931" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15063073..15066415 /note="source:INTACT659F_F82_scaffold_5-int 1 3343" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15075109..15077878 /note="source:CACAO_M_E36635_F15_scaffold_5 1 5514" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15078040..15080992 /note="source:CACAO_M_E36638_F143_scaffold_5 1 2953" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15081647..15081682) /note="source:CACAO_M_E45017_F15_scaffold_6 8428 8444" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15081683..15084418 /note="source:CACAO_M_S_E54676_F15_scaffold_5 1 2736" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15088869..15089278 /note="source:CACAO_M_E12463_F12_scaffold_3 3168 3500" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15090758..15091302) /note="source:CACAO_M_E9677_F7_scaffold_2 12315 12852" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15091313..15092299) /note="source:CACAO_M_E9677_F7_scaffold_2 11229 12202" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15092405..15092888) /note="source:CACAO_M_E56975_F85_scaffold_8 8871 9356" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15099351..15099813 /note="source:CACAO_M_E42134_F82_scaffold_5 651 1113" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15101847..15102475 /note="source:INTACT231_F12_scaffold_4-int 8719 9354" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15102627..15104396) /note="source:CACAO_M_E42514_F40_scaffold_5 11563 13319" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 15105782..15107134 /note="source:CACAO_M_E65323_F12_scaffold_9 9431 10741" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15112741..15113008) /note="source:CACAO_M_E65323_F12_scaffold_9 7737 7979" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15113034..15113467 /note="source:CACAO_M_E58821_F15_scaffold_9 22 465" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15113468..15115049) /note="source:CACAO_M_E49106_F85_scaffold_6 1747 3329" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15115046..15115880 /note="source:CACAO_M_E13851_F85_scaffold_3 2454 3309" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15115881..15118248 /note="source:CACAO_M_E58821_F15_scaffold_9 8378 10744" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15121152..15131301 /note="source:CACAO_M_S_E54692_F12_scaffold_5 1 10150" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15132995..15133137) /note="source:CACAO_M_E58324_F9_scaffold_9 23966 24088" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15134677..15134986) /note="source:CACAO_M_E13220_F12_scaffold_3 10534 10843" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15134957..15135102 /note="source:CACAO_M_E69945_F12_scaffold_9 8674 8803" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15135203..15135792) /note="source:CACAO_M_E43590_F7_scaffold_5 1 589" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15135793..15135852) /note="source:CACAO_M_S_E146091_F272_scaffold_11 3550 3611" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 15135836..15135920 /note="source:CACAO_M_E3248_F5_scaffold_1 18774 18854" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15136663..15137081) /note="source:CACAO_M_E3248_F5_scaffold_1 4077 4497" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15138999..15139736) /note="source:INTACT189_F49_scaffold_5-int 1101 1839" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15139733..15142443) /note="source:INTACT176_F12_scaffold_8-int 2696 5437" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15142432..15151354 /note="source:INTACT1820F_F94_scaffold_12-int 729 9299" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15151355..15152088 /note="source:CACAO_M_E13604_F90_scaffold_3 10442 11159" /mobile_element_type="retrotransposon:LTR/Copia" mRNA join(15154544..15154675,15154956..15155137, 15156143..15156246,15156880..15156950,15157060..15157251, 15157509..15157583,15157694..15157753,15158365..15158442, 15158568..15158619,15159508..15159779,15161691..15161939, 15162439..15162766,15163109..15163453) /locus_tag="TCM_023492" /product="TGACG motif-binding factor 6 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s03590.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023491t7" /inference="similar to AA sequence:Phytozome:POPTR_0006s03720.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00118t00009; alternateUTRof:Thecc1EG023492t1; inference alignment:Newbler:10:TSA:cgbaL_g00118t00013; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc248t20" mRNA join(15154918..15155137,15156143..15156246, 15156880..15156950,15157060..15157251,15157509..15157583, 15157694..15157753,15158365..15158442,15158568..15158619, 15159508..15159779,15161691..15161939,15162405..15162408, 15162443..15162766,15163109..15163134) /locus_tag="TCM_023492" /product="TGACG motif-binding factor 6 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s03590.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023491t7" /inference="similar to AA sequence:Phytozome:POPTR_0006s03720.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc248t20; alternateUTRof:Thecc1EG023492t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc248t20; inference alignment:Newbler:10:TSA:cgbaL_g00118t00013" CDS join(15155040..15155137,15156143..15156246, 15156880..15156950,15157060..15157251,15157509..15157583, 15157694..15157753,15158365..15158442,15158568..15158619, 15159508..15159779,15161691..15161939,15162405..15162408, 15162443..15162585) /locus_tag="TCM_023492" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG023491t7" /codon_start=1 /product="TGACG motif-binding factor 6 isoform 1" /protein_id="EOY08647.1" /db_xref="Phytozome:POPTR_0006s03720.1" /db_xref="TAIR:AT3G12250.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q41558" /translation="MGSRTVNIGIGNDKKAVTAMPSYVPSVPTSNPSSTEANTIRSSR IPDLGTLEQSLGFRIEDAVDLTRNPLFNQIKSSTQAIADAQFGAINKTLASADNNLSA AIVGSQTLTLKKDTPPNLVSISAGRENWGDSNMADASPRTDISTDDTDEKNQRFERGQ TNAIVASDSSDRSKDKTDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQ ELQRARQQGIFISSSGDQSHSMSGNGALAFDVEYARWLEEHNRQINELRAAVNSHAGD TELRTIVDNVTAHFDDIFRLKGIAAKADVFHILSGMWKTPAERCFLWIGGFRSSELLK LLANQLEPLTEQQFMGFHNLQQSSQQAEDALSQGMEALQQSLAETLANGSPGPSGSSG NVANYMGQMAMAMGKLGTLEGFVRQADNLRQQTLQQMHRILTTRQSARALLAINDYFS RLRALSSLWLARPRE" CDS join(15155040..15155137,15156143..15156246, 15156880..15156950,15157060..15157251,15157509..15157583, 15157694..15157753,15158365..15158442,15158568..15158619, 15159508..15159779,15161691..15161939,15162439..15162585) /locus_tag="TCM_023492" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG023491t7" /codon_start=1 /product="TGACG motif-binding factor 6 isoform 1" /protein_id="EOY08645.1" /db_xref="Phytozome:POPTR_0006s03720.1" /db_xref="TAIR:AT3G12250.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q41558" /translation="MGSRTVNIGIGNDKKAVTAMPSYVPSVPTSNPSSTEANTIRSSR IPDLGTLEQSLGFRIEDAVDLTRNPLFNQIKSSTQAIADAQFGAINKTLASADNNLSA AIVGSQTLTLKKDTPPNLVSISAGRENWGDSNMADASPRTDISTDDTDEKNQRFERGQ TNAIVASDSSDRSKDKTDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQ ELQRARQQGIFISSSGDQSHSMSGNGALAFDVEYARWLEEHNRQINELRAAVNSHAGD TELRTIVDNVTAHFDDIFRLKGIAAKADVFHILSGMWKTPAERCFLWIGGFRSSELLK LLANQLEPLTEQQFMGFHNLQQSSQQAEDALSQGMEALQQSLAETLANGSPGPSGSSG NVANYMGQMAMAMGKLGTLEGFVRQADNLRQQTLQQMHRILTTRQSARALLAINDYFS RLRALSSLWLARPRE" CDS join(15155040..15155137,15156143..15156246, 15156880..15156950,15157060..15157251,15157509..15157583, 15157694..15157753,15158365..15158442,15158568..15158619, 15159508..15159779,15161691..15161939,15162439..15162585) /locus_tag="TCM_023492" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG023491t7" /codon_start=1 /product="TGACG motif-binding factor 6 isoform 1" /protein_id="EOY08646.1" /db_xref="Phytozome:POPTR_0006s03720.1" /db_xref="TAIR:AT3G12250.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q41558" /translation="MGSRTVNIGIGNDKKAVTAMPSYVPSVPTSNPSSTEANTIRSSR IPDLGTLEQSLGFRIEDAVDLTRNPLFNQIKSSTQAIADAQFGAINKTLASADNNLSA AIVGSQTLTLKKDTPPNLVSISAGRENWGDSNMADASPRTDISTDDTDEKNQRFERGQ TNAIVASDSSDRSKDKTDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQ ELQRARQQGIFISSSGDQSHSMSGNGALAFDVEYARWLEEHNRQINELRAAVNSHAGD TELRTIVDNVTAHFDDIFRLKGIAAKADVFHILSGMWKTPAERCFLWIGGFRSSELLK LLANQLEPLTEQQFMGFHNLQQSSQQAEDALSQGMEALQQSLAETLANGSPGPSGSSG NVANYMGQMAMAMGKLGTLEGFVRQADNLRQQTLQQMHRILTTRQSARALLAINDYFS RLRALSSLWLARPRE" gene 15165023..15166069 /locus_tag="TCM_023529" /note="dbxref CacaoGD:Thecc1EG023529" mRNA join(15165023..15165411,15165472..15165878, 15166030..15166069) /locus_tag="TCM_023529" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008475t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4272t4" CDS join(15165265..15165411,15165472..15165624) /locus_tag="TCM_023529" /note="paralog of Thecc1EG008475t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08651.1" /translation="MADFGAENSRFLLLKLCEFAAGNFGGFAAIKGQQSAANLCRKIG AICCRFVQKNWTALCCQFEGEKAAWCCQIFEEKRVESAATEGGRKRPKEERKPRW" mobile_element 15169154..15169243 /note="source:CACAO_M_E42514_F40_scaffold_5 14879 14960" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 15169244..15169295 /note="source:CACAO_M_S_E85957_F12_scaffold_7 11604 11743" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15170192..15173014 /note="source:INTACT118_F5_scaffold_9-int 9844 12396" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15173841..15173899 /note="source:CACAO_M_E59600_F12_scaffold_9 5025 5083" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15173900..15176111 /note="source:CACAO_M_S_E86276_F15_scaffold_7 1 2194" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15176212..15176941 /note="source:CACAO_M_E22474_F15_scaffold_3 2248 2979" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15176802..15176966 /note="source:CACAO_Again_on_E14_scaffold_1 9758 9931" /mobile_element_type="transposon:TIR/hAT" mobile_element 15176942..15177578 /note="source:CACAO_M_E59600_F12_scaffold_9 5092 5730" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15177950..15181189 /note="source:INTACT118_F5_scaffold_9-int 9842 12393" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15181444..15182379 /note="source:CACAO_M_E42691_F9_scaffold_5 18 928" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15183416..15184338) /note="source:CACAO_M_E84189_F277_scaffold_10 2113 3002" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15184443..15185637 /note="source:CACAO_M_E35811_F12_scaffold_5 13891 15063" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15185744..15187813 /note="source:CACAO_M_S_E85656_F79_scaffold_7 399 2455" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15187814..15189523 /note="source:CACAO_M_E5212_F82_scaffold_2 1 1714" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15189524..15190868) /note="source:CACAO_M_E52472_F323_scaffold_7 2098 3443" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15190969..15193054 /note="source:CACAO_M_E59025_F323_scaffold_9 1113 3200" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15192934..15193070) /note="source:scaffold_9_CACTA_0934 6005 6140" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15193049..15193532) /note="source:CACAO_M_S_E100312_F82_scaffold_9 1115 1598" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15193634..15194624 /note="source:CACAO_M_E49857_F85_scaffold_7 22798 23787" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15194622..15195850) /note="source:CACAO_M_S_E100312_F82_scaffold_9 1 1232" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15195851..15197419 /note="source:CACAO_M_E35811_F12_scaffold_5 17305 18831" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15198850..15199448 /note="source:CACAO_M_E69760_F9_scaffold_9 12241 12814" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15199435..15199550 /note="source:scaffold_3_CACTA_0382 6328 6452" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15200412..15203350 /note="source:CACAO_M_E36678_F33_scaffold_5 1 2939" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15203370..15204750) /note="source:scaffold_3_CACTA_0382 10471 11878" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15204741..15205781) /note="source:scaffold_3_CACTA_0382 9598 10622" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15207600..15207647 /note="source:CACAO_M_E297_F134_scaffold_1 2657 2706" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15210883..15211970) /note="source:CACAO_M_E84368_F4_scaffold_10 768 1850" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 15211971..15213653 /note="source:CACAO_M_S_E53154_F78_scaffold_5 1 1683" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15213648..15214189 /note="source:CACAO_M_S_E83537_F78_scaffold_6 2307 2851" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15214190..15214961) /note="source:CACAO_M_E84368_F4_scaffold_10 1 772" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15215760..15218232) /note="source:INTACT676_F297_scaffold_3-int 7727 10220" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15218127..15218257) /note="source:scaffold_3_CACTA_0382 6315 6454" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15220169..15222040) /note="source:scaffold_4_CACTA_0494 2224 4037" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15222310..15222931) /note="source:scaffold_4_CACTA_0494 1548 2174" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15223730..15223848 /note="source:scaffold_9_CACTA_0934 3 120" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15223844..15224360 /note="source:scaffold_9_CACTA_0934 14850 15184" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15224386..15224973 /note="source:scaffold_9_CACTA_0934 15360 15971" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15225043..15225683 /note="source:CACAO_M_E12297_F14_scaffold_3 1 567" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15226605..15227578) /note="source:CACAO_M_E42691_F9_scaffold_5 4900 5912" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15230326..15230554 /note="source:CACAO_M_S_E6055_F310_scaffold_2 11761 11999" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15230529..15231263 /note="source:scaffold_3_CACTA_0382 11165 11878" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15236218..15243941 /note="source:INTACT544_F244_scaffold_5-int 1 7724" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15245305..15245345) /note="source:CACAO_M_E84368_F4_scaffold_10 1506 1545" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15245451..15245815) /note="source:INTACT607_F3_scaffold_4-int 13495 13859" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15245730..15245826 /note="source:CACAO_M_S_E119191_F3_scaffold_9 10259 10355" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15248265..15248356 /note="source:CACAO_M_E84368_F4_scaffold_10 11799 11892" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15248509..15249001) /note="source:CACAO_M_E294_F134_scaffold_1 9592 10083" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15250433..15250793 /note="source:INTACT642F_F365_scaffold_5-int 5917 6271" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15252507..15252648 /note="source:INTACT39F_F22_scaffold_1-int 5451 5593" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15252641..15254110 /note="source:CACAO_M_E35811_F12_scaffold_5 6461 7896" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15254216..15254530) /note="source:CACAO_M_E84368_F4_scaffold_10 633 947" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15254532..15257493) /note="source:CACAO_M_E6163_F143_scaffold_2 1 2978" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15257494..15258129) /note="source:CACAO_M_E84368_F4_scaffold_10 1 636" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15258130..15261544) /note="source:INTACT607_F3_scaffold_4-int 10074 13499" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15261541..15261807) /note="source:CACAO_M_E5899_F5_scaffold_2 21830 22092" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(15262699..15263610) /locus_tag="TCM_023538" /note="dbxref CacaoGD:Thecc1EG023538" mRNA complement(15262699..15263610) /locus_tag="TCM_023538" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.51 coverage" CDS complement(15263202..15263435) /locus_tag="TCM_023538" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08652.1" /translation="MVIIYSELMGTSSKACLGFGGFKRKFRMLVTAEERLLQQGPNRH SPPGPSKPFYENWFIRPPVLSLPLRFLIHCFQK" mobile_element complement(15263274..15263327) /note="source:CACAO_M_E43428_F369_scaffold_5 7802 7854" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15263402..15264107 /note="source:scaffold_5_CACTA_0596 11166 11871" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15264108..15266732 /note="source:CACAO_M_S_E54767_F231_scaffold_5 1 2625" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15266734..15267821 /note="source:scaffold_5_CACTA_0596 11868 12941" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15268680..15275701 /note="source:INTACT778_F53_scaffold_5-int 1 7022" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15275826..15278720 /note="source:CACAO_M_E4262_F134_scaffold_2 7752 10621" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15278719..15279295 /note="source:CACAO_M_E34175_F134_scaffold_4 2385 2961" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15279326..15279702) /note="source:scaffold_3_CACTA_0388 8075 8453" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15279740..15279942) /note="source:INTACT607_F3_scaffold_4-int 9804 10006" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15279943..15282077 /note="source:CACAO_M_E1134_F15_scaffold_1 1 2135" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15282056..15283260) /note="source:INTACT584_F15_scaffold_3-int 10110 11534" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15283361..15283690 /note="source:CACAO_M_E35783_F15_scaffold_5 1221 1550" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15284682..15284873) /note="source:INTACT584_F15_scaffold_3-int 372 563" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15285303..15285958) /note="source:CACAO_M_E35024_F15_scaffold_5 48 702" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15285953..15286574 /note="source:CACAO_M_S_E119191_F3_scaffold_9 4440 5075" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15286570..15287084 /note="source:INTACT646_F284_scaffold_3-int 2078 2595" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15287085..15289715 /note="source:CACAO_M_E36740_F369_scaffold_5 1 2631" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15289782..15291978 /note="source:scaffold_1_CACTA_0028 13537 15740" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15291973..15292906) /note="source:INTACT607_F3_scaffold_4-int 2610 3559" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15292904..15293036) /note="source:scaffold_5_CACTA_0596 8036 8171" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15292954..15295735 /note="source:INTACT39F_F22_scaffold_1-int 2041 3568" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15295734..15295964) /note="source:INTACT607_F3_scaffold_4-int 2388 2618" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15295877..15296179 /note="source:CACAO_M_S_E119191_F3_scaffold_9 9266 9570" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15296184..15299156 /note="source:CACAO_M_E36749_F143_scaffold_5 1 2973" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15299626..15302952 /note="source:CACAO_M_S_E54814_F85_scaffold_5 1 3327" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15302959..15303182 /note="source:scaffold_5_CACTA_0591 9532 9756" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15303239..15303570 /note="source:scaffold_5_CACTA_0591 9749 10080" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15303537..15304516 /note="source:scaffold_5_CACTA_0591 15441 16422" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15304517..15307375 /note="source:CACAO_M_E36751_F15_scaffold_5 1 2859" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15307376..15307583 /note="source:scaffold_5_CACTA_0591 16418 16631" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15307573..15307779) /note="source:INTACT453_F4_scaffold_9-int 1189 1401" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 15309381..15310014 /note="source:CACAO_M_E5899_F5_scaffold_2 20800 21430" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15311973..15312033) /note="source:CACAO_M_E5899_F5_scaffold_2 8903 8963" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15313171..15314974) /note="source:INTACT506_F233_scaffold_3-int 1026 2813" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15314982..15315822) /note="source:INTACT506_F233_scaffold_3-int 7322 8169" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15316554..15316851 /note="source:INTACT1263F_F42_scaffold_7-int 5649 5944" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15316679..15317934) /note="source:INTACT506_F233_scaffold_3-int 3101 4324" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15317922..15318046) /note="source:INTACT239_F181_scaffold_4-int 4640 4765" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 15317937..15320690 /note="source:scaffold_5_CACTA_0591 582 3337" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15320695..15321092) /note="source:CACAO_M_S_E84376_F22_scaffold_6 11469 11867" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15321623..15321936 /note="source:scaffold_4_CACTA_0493 3947 4277" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15322973..15324124 /note="source:INTACT95_F143_scaffold_9-int 4424 5523" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15324126..15326832 /note="source:CACAO_M_E36757_F345_scaffold_5 1 2707" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15326834..15328712 /note="source:INTACT95_F143_scaffold_9-int 5520 7403" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15328951..15329153) /note="source:scaffold_4_CACTA_0493 3830 4042" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15329155..15329544) /note="source:scaffold_4_CACTA_0493 3129 3524" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15329546..15332362 /note="source:CACAO_M_S_E54824_F15_scaffold_5 1 2817" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15333936..15340080 /note="source:CACAO_M_S_E84376_F22_scaffold_6 9841 15935" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15341169..15341614) /note="source:CACAO_M_E5899_F5_scaffold_2 20484 20961" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15341613..15342600 /note="source:CACAO_M_S_E84376_F22_scaffold_6 17768 18741" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15342608..15344664) /note="source:CACAO_M_E36757_F345_scaffold_5 1 1523" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15351266..15353710) /note="source:CACAO_M_E23048_F42_scaffold_4 674 3121" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15353811..15354458) /note="source:CACAO_M_E58440_F42_scaffold_9 7005 7653" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15354452..15356734 /note="source:scaffold_5_CACTA_0591 7786 9533" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15357671..15359392 /note="source:scaffold_5_CACTA_0591 7787 9533" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15359482..15360921) /note="source:INTACT155_F44_scaffold_4-int 9490 10934" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15363002..15363817 /note="source:scaffold_5_CACTA_0591 8605 9461" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15365202..15365439 /note="source:CACAO_M_E1841_F5_scaffold_1 10747 10992" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15365228..15365878 /note="source:scaffold_5_CACTA_0591 5747 6364" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15365895..15366263 /note="source:CACAO_M_E42130_F15_scaffold_5 1 369" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15366252..15366324 /note="source:CACAO_M_S_E4911_F76_scaffold_1 11576 11653" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15366260..15376146) /note="source:CACAO_M_E3634_F15_scaffold_1 1 9874" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15376152..15376273 /note="source:CACAO_M_E58324_F9_scaffold_9 9470 9589" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15376274..15376336 /note="source:CACAO_M_S_E5046_F335_scaffold_1 1 52" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15376337..15378865 /note="source:CACAO_M_S_E85177_F5_scaffold_7 17615 20248" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15378864..15380038 /note="source:CACAO_M_S_E5046_F335_scaffold_1 18305 19500" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15380037..15380842 /note="source:CACAO_M_E35811_F12_scaffold_5 16835 17644" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15380836..15382058 /note="source:scaffold_5_CACTA_0591 8349 9533" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15382179..15384437 /note="source:scaffold_5_CACTA_0591 7786 9533" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15384491..15387442 /note="source:CACAO_M_E36883_F15_scaffold_5 1 2952" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15387514..15389852 /note="source:scaffold_5_CACTA_0591 7786 9533" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15389896..15390056) /note="source:CACAO_M_E1841_F5_scaffold_1 5308 5468" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15390057..15396950 /note="source:INTACT496_F230_scaffold_5-int 1 6894" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15396951..15397987) /note="source:CACAO_M_E1841_F5_scaffold_1 13929 15000" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15397064..15398127) /note="source:scaffold_4_CACTA_0493 33 1129" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15398165..15400543) /note="source:CACAO_M_E1036_F33_scaffold_1 438 2820" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(15398608..15405989) /locus_tag="TCM_023542" /note="dbxref CacaoGD:Thecc1EG023542" mRNA complement(join(15398608..15398787,15399623..15399706, 15401607..15402729,15403090..15403455,15403566..15404357, 15404442..15404876,15405057..15405355,15405434..15405520, 15405632..15405989)) /locus_tag="TCM_023542" /product="DNA/RNA polymerases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400052570.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032595t1" /inference="similar to AA sequence:Phytozome:Glyma04g32860.1" /note="quality class is strong-expresste, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.26 coverage" CDS complement(join(15399660..15399706,15401607..15402729, 15403090..15403455,15403566..15404357,15404442..15404876, 15405057..15405355,15405434..15405520,15405632..15405815)) /locus_tag="TCM_023542" /note="paralog of Thecc1EG032595t1" /codon_start=1 /product="DNA/RNA polymerases superfamily protein" /protein_id="EOY08653.1" /db_xref="Phytozome:Glyma04g32860.1" /translation="MPTEAAQALAAFFAAMASQAQTGQVPPVVPPTTPLVPPPVQDVS ISKKLKEARQLGYVSFTDKRARTWWNSVKSHSATPQTWSDFLKEFDEEYETRFNKLML YVPNLVRSEQDQANYFEEGLRNEIRERMTVTGREPHKEVVQMALRAEKFATENRRIRT EFAKRRNPGMSSSQLVKRGKDSATSGSTTSMGHIRSNCPWLGRATVAASSPPARTNMQ RRDSSGLSPRQGVAIQFGVESNTSTHPPSRPQTRTATRVFAVTEDEARVRPGAVTGTM SLFDKDAYVLIDSGSDRSYVSTTFASIADRNLSPLEGEIVVHTPLGEQLIRNTCYRDC GLTAHRANVDYFRKEVVLRNSDGAEIVFVGEHRVLPSCVISAIKASKLVQKGYPTYLA YVIDTSKGEPKLEDVPIVSEFLDVFPDDLPGLPPDRELEFPIDLLPDTAPISIPPYRM APAELKELKVQLQDLVDKGFIRLSISPWGALVLFVKKKDGTLRLCIDYRQLNRVTIKN KYPLPRIDDLFDQLRGAMVFSKIDLRSGYYQLRIKEQDVPKTAFRMRYGHYEFLVMPF GLTNALAVFMDLMNRVFHPYLDKFVIVFIDDILEVVFLGHVVSGAGIYVDPKKIQAIL QWEQPRMVTEISSFLGLVDYYRRFVQGFSLIAAPLTRLTHKGVKFEWDDVCENRFQEL KNRLTSTPVLTLPVSGKEFVVYSDASKLGLGCVLMQDEKLNNGEDGTLLASFVVRPSL LNQIRELQKSDDWLKQEVQKLQDGEASEFRLSDDGTLMLRDRICVLKDDQLRRAILEE AHSSAYALHLESTKMYRTIKESYWWPGMKRDIAEFVAKCLTCQQIKAEHQKLSGTLQP LPIPEWKWEHVTMDFVLGLLRTQSGKDAIWVIVDRLTKSAHFLAIHNTYSIEKLVKLY IDEIVRLYGVPISIVSDRDPRFTSRFWSKFQEALGTKLRFSTAFHPQTDGQSERTIQT LEDMLRACVIDFIGSWDRHLPLVEFAYNNSFQSSIGMAPYEALYGRKCQTPFCWDEVG ERKLVNVELIDLTNNKVKVIRERLKTAQDRQKNYLDKRRKDLEFEVDDKVFLKVSPWK GNNLKFPSGESSDKGKEIASED" mobile_element 15400776..15408306 /note="source:INTACT670_F33_scaffold_3-int 2617 10143" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15408407..15409245 /note="source:INTACT670_F33_scaffold_3-int 2121 2956" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15409243..15409286) /note="source:scaffold_4_CACTA_0493 6 55" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15410023..15411730 /note="source:CACAO_M_S_E83372_F14_scaffold_6 3036 4756" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15411728..15412162) /note="source:INTACT280_F60_scaffold_5-int 8463 8897" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15412153..15413507 /note="source:scaffold_5_CACTA_0591 7899 9248" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15416752..15427983 /note="source:INTACT667_F51_scaffold_5-int 1 11232" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15430706..15433622 /note="source:CACAO_M_S_E55322_F164_scaffold_5 1 2917" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15445350..15445485 /note="source:CACAO_M_E453_F12_scaffold_1 3345 3478" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15445363..15446027) /note="source:CACAO_M_E33282_F13_scaffold_4 11860 12521" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15446344..15446987 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3011 3695" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15448946..15449627 /note="source:CACAO_M_S_E64832_F14_scaffold_5 3633 4309" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15449628..15449924) /note="source:INTACT1443F_F12_scaffold_9-int 8727 9024" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15449927..15459697) /note="source:CACAO_M_E72770_F13_scaffold_10 305 10220" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 15451106..15454400 /locus_tag="TCM_023546" /note="dbxref CacaoGD:Thecc1EG023546" mRNA join(15451106..15452244,15453522..15454400) /locus_tag="TCM_023546" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027525t1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.42 coverage" CDS join(15451649..15452244,15453522..15453660) /locus_tag="TCM_023546" /note="paralog of Thecc1EG027525t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08654.1" /translation="MTSIREAKDLNVITLDEICGSLLTHELELKEEKEEDKREAKEKK KCTALKASILKVELEELSCDDDEELALVARKFKKLMGKINRRLGRRGFRTDQSASWKI KNKNDSNKNEELICYEYKKPGHFKFECPLLKDKTPKKNKKSKKEMVAIAWSNSDTSSS KAEDEKSEERANIYLMAQDDETEVSLSPCDISIDDLQDKKVENEKGLAIVSIRSDHGR AFENDEFEEFCNKKGLDHNFSAPRTP" mobile_element complement(15459694..15460391) /note="source:CACAO_M_E33282_F13_scaffold_4 10259 10952" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15467274..15467941) /note="source:CACAO_M_E33282_F13_scaffold_4 11860 12521" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15468158..15468423 /note="source:CACAO_M_S_E31635_F14_scaffold_3 2780 3040" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15469867..15469919) /note="source:CACAO_M_E58819_F24_scaffold_9 2993 3046" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15469907..15469980) /note="source:INTACT1896F_F100_scaffold_16-int 1 75" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 15480177..15480533 /note="source:INTACT642F_F365_scaffold_5-int 5911 6271" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15482413..15482554 /note="source:INTACT39F_F22_scaffold_1-int 5451 5593" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15482529..15482898) /note="source:INTACT126_F14_scaffold_3-int 4299 4665" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15483344..15484640 /note="source:CACAO_M_E33228_F15_scaffold_4 7955 9247" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15489296..15492393 /note="source:CACAO_M_S_E55801_F42_scaffold_5 1 3098" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15492394..15494581) /note="source:CACAO_M_S_E83691_F15_scaffold_6 3008 5190" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15494582..15497830 /note="source:CACAO_M_E10786_F15_scaffold_2 1 2978" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15497831..15498448) /note="source:INTACT126_F14_scaffold_3-int 3155 3772" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15500052..15500837) /note="source:CACAO_M_E1841_F5_scaffold_1 14357 15161" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15504413..15504838) /note="source:INTACT300_F7_scaffold_5-int 7837 8261" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15504975..15507694) /note="source:CACAO_M_S_E32089_F15_scaffold_3 4 2733" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15507752..15510690 /note="source:CACAO_M_E37281_F143_scaffold_5 1 2939" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15510692..15511025 /note="source:CACAO_M_S_E5046_F335_scaffold_1 15397 15733" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15511293..15511737 /note="source:INTACT126_F14_scaffold_3-int 3155 3600" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15511737..15514000) /note="source:CACAO_M_E9677_F7_scaffold_2 7150 9415" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15514101..15522701) /note="source:CACAO_M_E13021_F15_scaffold_3 1 8589" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15522702..15523721 /note="source:INTACT126_F14_scaffold_3-int 3596 4665" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15523696..15523837) /note="source:INTACT39F_F22_scaffold_1-int 5451 5593" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15523804..15523876 /note="source:CACAO_M_E1841_F5_scaffold_1 15167 15241" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15524060..15527017 /note="source:CACAO_M_E37287_F33_scaffold_5 1 2958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15529199..15529909 /note="source:CACAO_M_E5899_F5_scaffold_2 9779 10502" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15530412..15531195) /note="source:CACAO_M_E1841_F5_scaffold_1 14357 15162" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15531286..15532957) /note="source:CACAO_M_E1841_F5_scaffold_1 9632 10953" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15534799..15535609) /note="source:INTACT30F_F12_scaffold_1-int 13880 14711" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15535586..15535609) /note="source:scaffold_8_CACTA_0859 4503 4529" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15535610..15538367 /note="source:CACAO_M_E37302_F15_scaffold_5 1 2758" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15538368..15540076) /note="source:CACAO_M_S_E64023_F13_scaffold_5 3039 4974" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15540077..15540679) /note="source:INTACT1896F_F100_scaffold_16-int 11541 12169" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(15548731..15551369) /note="source:scaffold_4_CACTA_0492 5380 8005" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15551470..15551808) /note="source:scaffold_4_CACTA_0492 7231 7568" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15552693..15556513) /note="source:scaffold_4_CACTA_0492 3907 7714" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15575486..15576549) /note="source:scaffold_4_CACTA_0492 6528 7588" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15584322..15584659) /note="source:scaffold_4_CACTA_0492 6326 6664" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15586803..15587394) /note="source:scaffold_4_CACTA_0492 7129 7717" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15587715..15588183) /note="source:scaffold_4_CACTA_0492 11761 12225" /mobile_element_type="transposon:TIR/CACTA" assembly_gap 15589958..15599957 /estimated_length=10000 /gap_type="between scaffolds" mobile_element 15599959..15600186 /note="source:CACAO_M_S_E85177_F5_scaffold_7 19993 20251" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15599985..15600190) /note="source:CACAO_M_E1841_F5_scaffold_1 19373 19580" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15600183..15600690) /note="source:scaffold_4_CACTA_0492 6247 6754" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15601357..15602268) /note="source:scaffold_4_CACTA_0492 6556 7465" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15603180..15605817) /note="source:scaffold_4_CACTA_0492 5227 7864" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15613698..15616430 /note="source:CACAO_M_E39871_F15_scaffold_5 1 2733" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15616321..15616452 /note="source:scaffold_8_CACTA_0859 4393 4525" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15643332..15645260 /note="source:INTACT1896F_F100_scaffold_16-int 9846 11851" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(15645261..15657560) /note="source:scaffold_4_CACTA_0492 1 10194" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15657769..15666323 /note="source:INTACT218_F33_scaffold_9-int 2334 10958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15666324..15666550 /note="source:scaffold_2_CACTA_0256 11849 12075" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15666714..15670617 /note="source:CACAO_LINE_E_135_scaffold_5 1 3904" /mobile_element_type="retrotransposon:LINE/L1" mobile_element 15670611..15670695 /note="source:INTACT1941F_F100_scaffold_16-int 4811 4896" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(15677428..15678629) /note="source:CACAO_M_E58324_F9_scaffold_9 9037 10226" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15678630..15681366 /note="source:CACAO_M_S_E61874_F15_scaffold_5 1 2737" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15681256..15681381) /note="source:CACAO_M_E44425_F33_scaffold_6 4646 4770" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15681364..15682785 /note="source:CACAO_M_E52239_F256_scaffold_7 21002 22438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15686035..15686151 /note="source:CACAO_M_E58324_F9_scaffold_9 7657 7772" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15687017..15688024) /note="source:INTACT95_F143_scaffold_9-int 1370 2302" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15688025..15688093 /note="source:CACAO_M_E34892_F86_scaffold_5 1 52" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15688094..15691780 /note="source:CACAO_M_E40720_F86_scaffold_5 1 3687" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15691881..15696519 /note="source:CACAO_M_E40720_F86_scaffold_5 3688 8326" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15697378..15698929 /note="source:CACAO_M_E69760_F9_scaffold_9 6774 8320" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15699223..15701613) /note="source:CACAO_M_E50525_F33_scaffold_7 3540 4950" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15701615..15703491 /note="source:CACAO_M_E3676_F243_scaffold_1 3 1878" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15703592..15705142 /note="source:CACAO_Again_on_E100_scaffold_4 2935 4463" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(15712413..15712547) /note="source:CACAO_M_E57097_F245_scaffold_8 5949 6077" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15712535..15712872) /note="source:CACAO_M_E3676_F243_scaffold_1 1 338" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15712873..15713101) /note="source:INTACT409F_F47_scaffold_4-int 12779 13008" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 15712873..15712904 /note="source:CACAO_M_S_E31635_F14_scaffold_3 4699 4731" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15713092..15714169) /note="source:INTACT409F_F47_scaffold_4-int 11561 12644" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15714226..15715937) /note="source:CACAO_M_S_E4863_F51_scaffold_1 2795 4505" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15716061..15716610) /note="source:CACAO_M_E43348_F5_scaffold_5 18987 19574" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15716766..15716877 /note="source:CACAO_M_S_E4863_F51_scaffold_1 2296 2407" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15716887..15716938 /note="source:INTACT695_F301_scaffold_5-int 12388 12437" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15716945..15717841 /note="source:INTACT409F_F47_scaffold_4-int 11561 12458" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15717824..15718559) /note="source:CACAO_M_S_E145698_F277_scaffold_11 5332 6045" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15718558..15718934) /note="source:CACAO_M_S_E4863_F51_scaffold_1 5301 5678" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15723791..15725147 /note="source:CACAO_LINE_E_135_scaffold_5 322 1680" /mobile_element_type="retrotransposon:LINE/L1" mobile_element complement(15727270..15727703) /note="source:INTACT695_F301_scaffold_5-int 11854 12286" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15729598..15730691 /note="source:INTACT409F_F47_scaffold_4-int 11559 12644" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 15730686..15730910 /note="source:CACAO_M_S_E4863_F51_scaffold_1 1220 1444" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15730911..15733801) /note="source:CACAO_M_E69554_F279_scaffold_9 26 2908" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(15733557..15733835) /note="source:CACAO_on_S_E390_scaffold_9 5179 5456" /mobile_element_type="transposon:TIR/Mutator" mobile_element 15733827..15735475 /note="source:CACAO_M_S_E4863_F51_scaffold_1 11562 13203" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15740578..15741638 /note="source:CACAO_M_S_E31635_F14_scaffold_3 2347 3530" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15741635..15741804 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3742 3915" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15741805..15744808 /note="source:CACAO_M_E40875_F277_scaffold_5 1 3004" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15744809..15745515 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3911 4614" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15746113..15747811 /note="source:CACAO_LINE_E_135_scaffold_5 770 2469" /mobile_element_type="retrotransposon:LINE/L1" mobile_element 15747812..15750763 /note="source:CACAO_M_S_E62120_F173_scaffold_5 1 2952" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15756053..15758839) /note="source:CACAO_M_S_E20068_F245_scaffold_3 168 2959" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15758839..15761782 /note="source:CACAO_M_S_E64440_F7_scaffold_5 3970 6913" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15761781..15761956 /note="source:CACAO_M_S_E119127_F246_scaffold_9 9577 9748" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15764748..15765226) /note="source:CACAO_M_S_E787_F231_scaffold_1 2122 2613" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15765221..15767488) /note="source:CACAO_M_E34948_F144_scaffold_5 4 2287" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15782752..15785669) /note="source:CACAO_M_E33664_F288_scaffold_4 1 2903" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15793192..15794101) /note="source:INTACT95_F143_scaffold_9-int 2055 2963" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15794102..15796918 /note="source:CACAO_M_E41126_F15_scaffold_5 1 2817" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15796919..15797361) /note="source:INTACT95_F143_scaffold_9-int 1605 2059" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15797365..15798510) /note="source:INTACT95_F143_scaffold_9-int 13848 14866" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15800452..15802356 /note="source:CACAO_M_E58324_F9_scaffold_9 8390 10225" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15802410..15803871 /note="source:CACAO_M_S_E85177_F5_scaffold_7 17615 19094" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15803871..15804268) /note="source:scaffold_3_CACTA_0388 8967 9374" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15807601..15807764) /note="source:scaffold_3_CACTA_0388 8805 8968" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15807765..15807807) /note="source:INTACT39F_F22_scaffold_1-int 2300 2505" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15809648..15810666) /note="source:scaffold_8_CACTA_0859 16854 17937" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15810667..15823010 /note="source:CACAO_M_S_E4555_F7_scaffold_1 1 9935" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15823011..15825979 /note="source:CACAO_M_E10603_F306_scaffold_2 4817 7769" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15823011..15823312) /note="source:CACAO_M_S_E145698_F277_scaffold_11 8866 9162" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15825975..15826361 /note="source:INTACT85_F9_scaffold_4-int 5437 5854" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15826362..15829132 /note="source:CACAO_M_E41138_F98_scaffold_5 1 2771" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15829133..15829947) /note="source:CACAO_M_E11098_F15_scaffold_2 12450 13266" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15829948..15832886 /note="source:CACAO_M_E41139_F173_scaffold_5 1 2939" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15832887..15837041 /note="source:INTACT85_F9_scaffold_4-int 6661 10899" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15837152..15838075 /note="source:INTACT85_F9_scaffold_4-int 11050 11976" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15839018..15839462 /note="source:CACAO_M_E5899_F5_scaffold_2 20488 20959" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15840491..15840803 /note="source:INTACT85_F9_scaffold_4-int 11961 12273" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15840805..15842737) /note="source:INTACT95_F143_scaffold_9-int 1013 2964" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15842751..15842798) /note="source:INTACT88_F12_scaffold_4-int 2338 2385" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15842813..15843361) /note="source:CACAO_M_E5899_F5_scaffold_2 22173 22689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15843360..15844185) /note="source:INTACT300_F7_scaffold_5-int 5450 6259" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15844286..15849386) /note="source:CACAO_M_E9395_F12_scaffold_2 2062 5882" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15850836..15850979 /note="source:INTACT39F_F22_scaffold_1-int 5451 5593" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15850958..15852456 /note="source:INTACT95_F143_scaffold_9-int 15313 16810" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15852517..15853545) /note="source:INTACT95_F143_scaffold_9-int 13849 14866" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15853549..15854506 /note="source:INTACT85_F9_scaffold_4-int 12272 13200" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15854507..15857252 /note="source:CACAO_M_S_E62508_F15_scaffold_5 1 2717" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15857253..15859016 /note="source:INTACT85_F9_scaffold_4-int 13225 14998" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15859018..15859347) /note="source:scaffold_8_CACTA_0859 16529 16857" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15867813..15868040) /note="source:INTACT642F_F365_scaffold_5-int 8986 9217" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15868028..15870048 /note="source:INTACT774_F328_scaffold_5-int 960 2958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15870045..15874816 /note="source:CACAO_M_E65173_F256_scaffold_9 5287 10103" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15875700..15877001 /note="source:scaffold_4_CACTA_0492 16050 17349" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15883774..15883791 /note="source:INTACT405F_F91_scaffold_4-int 4276 4293" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 15883792..15886493 /note="source:CACAO_M_E41439_F73_scaffold_5 1 2702" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15886726..15886932 /note="source:scaffold_5_CACTA_0591 16788 16996" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15887042..15887163) /note="source:CACAO_M_S_E6875_F7_scaffold_2 6452 6574" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15890670..15891296 /note="source:CACAO_M_E52239_F256_scaffold_7 21814 22428" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15891297..15894385 /note="source:CACAO_M_S_E63092_F42_scaffold_5 1 3089" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15894394..15896109 /note="source:scaffold_5_CACTA_0591 7830 9533" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15896270..15899249 /note="source:CACAO_M_E14839_F7_scaffold_3 1 2989" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15919487..15920324) /note="source:CACAO_M_S_E16290_F7_scaffold_2 2091 2987" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15920324..15921311) /note="source:CACAO_M_E11662_F12_scaffold_2 7524 8501" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15921411..15921491) /note="source:CACAO_M_E11662_F12_scaffold_2 7451 7532" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15921514..15921558) /note="source:CACAO_M_E11662_F12_scaffold_2 7207 7251" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15921613..15922201) /note="source:CACAO_M_E11662_F12_scaffold_2 6478 7042" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15922197..15923743) /note="source:CACAO_M_E11662_F12_scaffold_2 4780 6327" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15923745..15924827) /note="source:INTACT95_F143_scaffold_9-int 1013 2085" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15924896..15925950) /note="source:CACAO_M_S_E15173_F4_scaffold_2 5863 6943" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 15927482..15933026 /note="source:CACAO_M_S_E120315_F15_scaffold_10 4782 10363" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15929690..15947221 /note="source:scaffold_5_CACTA_0591 1 17532" /mobile_element_type="transposon:TIR/CACTA" mobile_element 15951373..15954343 /note="source:CACAO_M_E41709_F15_scaffold_5 1 2971" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15955165..15956063 /note="source:CACAO_M_E5899_F5_scaffold_2 20510 21393" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15956195..15957353 /note="source:CACAO_M_E5899_F5_scaffold_2 21578 22696" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15963654..15963717) /note="source:INTACT1941F_F100_scaffold_16-int 4825 4892" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 15963709..15966111 /note="source:CACAO_M_S_E64023_F13_scaffold_5 13492 15884" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 15963759..15974615 /locus_tag="TCM_023563" /note="dbxref CacaoGD:Thecc1EG023563" mRNA join(15963759..15963819,15965302..15965690, 15972096..15972175,15972760..15972802,15974021..15974615) /locus_tag="TCM_023563" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018144t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is weak, protein is complete" mobile_element complement(15964762..15966547) /note="source:INTACT542_F243_scaffold_4-int 5415 7203" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(15965516..15965690,15972096..15972175, 15972760..15972802,15974021..15974367) /locus_tag="TCM_023563" /note="paralog of Thecc1EG018144t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08655.1" /translation="MLDKVSPEVRFECTSRSGHHVRVRLNQRKERLCVRCKNMFMGMG HLTALAVSVGYLDEDGEQSTLVKVQKLCLETGIRSTSTPRTPWQTRLDALRKVSPSDS EGGPSQIPNNRIHRNLAEWVHNKESFESSQNFESESSSNILKTGIDFLLKQSEEYHRE HTRKAIARGDIRLRKGVNVVRHFPLGYGRNAAPVSAEEIRRRQQAWIKEQRRKS" mobile_element 15970327..15978394 /note="source:CACAO_M_E41756_F85_scaffold_5 1 8068" /mobile_element_type="retrotransposon:LTR/Gypsy" misc_feature join(15970732..15971459,15972096..15972115, 16036888..16036918) /locus_tag="TCM_023563" /note="Gene fragment of Thecc1EG023563t1; dbxref gnl|CacaoGD|Thecc1EG023563t1; quality class is strongpartial-partof is thecc1eg023563t1, express is strong, homology is paralog strong, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.44 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4307t1; dbxref CacaoGD:Thecc1EG023564t1" mobile_element 15978799..15990915 /note="source:CACAO_M_E41756_F85_scaffold_5 8069 20185" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15990916..15991978 /note="source:scaffold_5_CACTA_0591 8399 9462" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15991964..15991978) /note="source:CACAO_M_E58715_F13_scaffold_9 11512 11527" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15991979..15994735 /note="source:CACAO_M_E41761_F15_scaffold_5 1 2757" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15994762..15997010 /note="source:scaffold_5_CACTA_0591 7786 9533" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15997021..15998284) /note="source:INTACT95_F143_scaffold_9-int 1705 2966" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(15998273..15998738) /note="source:CACAO_M_S_E64023_F13_scaffold_5 5277 5776" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 15999805..15999852 /note="source:scaffold_4_CACTA_0497 1218 1264" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(15999824..16001665) /note="source:CACAO_M_S_E64023_F13_scaffold_5 5810 7649" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16001663..16005741 /note="source:scaffold_5_CACTA_0591 7786 9533" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16007543..16008906) /note="source:CACAO_M_S_E7390_F7_scaffold_2 313 1686" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16008907..16019900 /note="source:CACAO_M_E41784_F15_scaffold_5 1 10994" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16021544..16022399) /note="source:CACAO_M_E58324_F9_scaffold_9 7669 8560" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16022393..16023240 /note="source:scaffold_5_CACTA_0591 16631 17474" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16023241..16024985 /note="source:CACAO_M_E5899_F5_scaffold_2 1 1722" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16025101..16025428 /note="source:CACAO_M_S_E84261_F4_scaffold_6 1 328" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16025429..16028423) /note="source:CACAO_M_S_E64584_F7_scaffold_5 1 2994" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16028424..16031089 /note="source:CACAO_M_E84368_F4_scaffold_10 324 2980" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16031085..16032631 /note="source:INTACT11_F4_scaffold_8-int 3027 4573" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16032632..16035560 /note="source:CACAO_M_E41787_F273_scaffold_5 1 2929" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16035561..16036820 /note="source:INTACT11_F4_scaffold_8-int 4569 5826" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16036821..16039571 /note="source:CACAO_M_E41788_F15_scaffold_5 1 2732" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16039572..16039681 /note="source:CACAO_M_S_E84261_F4_scaffold_6 8781 8886" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16040336..16040387) /note="source:CACAO_M_S_E5046_F335_scaffold_1 19751 19804" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16040390..16040789 /note="source:CACAO_M_E58324_F9_scaffold_9 20510 20967" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16041236..16041899 /note="source:CACAO_M_E58324_F9_scaffold_9 9732 10221" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16041470..16041994) /note="source:scaffold_5_CACTA_0591 10060 10575" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16041931..16042030) /note="source:CACAO_M_E49857_F85_scaffold_7 20649 20749" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16041985..16042041) /note="source:INTACT160_F4_scaffold_7-int 12735 12791" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16042020..16043763) /note="source:CACAO_M_S_E5046_F335_scaffold_1 16304 18135" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16043774..16044197) /note="source:CACAO_M_S_E5046_F335_scaffold_1 15302 15733" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16044341..16044797) /note="source:CACAO_M_E5899_F5_scaffold_2 8957 9341" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16045153..16045213) /note="source:CACAO_M_E5899_F5_scaffold_2 8903 8963" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16045252..16045849) /note="source:CACAO_M_S_E5046_F335_scaffold_1 3410 4004" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16046968..16047432 /note="source:CACAO_M_E5899_F5_scaffold_2 20509 20962" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16047885..16048783 /note="source:CACAO_M_E5899_F5_scaffold_2 21827 22689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16048409..16049153) /note="source:CACAO_M_E49857_F85_scaffold_7 20295 21048" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16048854..16049730 /note="source:INTACT735_F7_scaffold_8-int 3094 4014" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16049738..16050826 /note="source:scaffold_9_CACTA_0929 8796 9868" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16049739..16052303) /note="source:CACAO_M_E58324_F9_scaffold_9 21588 24069" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16052313..16054769 /note="source:INTACT597_F267_scaffold_2-int 9863 12310" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16054770..16057733 /note="source:CACAO_M_S_E63841_F173_scaffold_5 1 2964" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16057734..16058492) /note="source:INTACT329_F199_scaffold_2-int 1888 2646" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16058505..16058713 /note="source:INTACT597_F267_scaffold_2-int 14028 14212" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16058692..16059341) /note="source:INTACT329_F199_scaffold_2-int 1260 1909" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16059358..16059632 /note="source:CACAO_M_E5899_F5_scaffold_2 20604 20863" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16059623..16060404 /note="source:CACAO_M_S_E89272_F5_scaffold_8 11002 11781" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16060405..16069551) /note="source:INTACT439_F42_scaffold_7-int 941 10139" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16069550..16070272) /note="source:CACAO_M_E52239_F256_scaffold_7 20569 21268" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16070278..16072816 /note="source:CACAO_M_S_E85177_F5_scaffold_7 17614 20246" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16072858..16073587 /note="source:scaffold_5_CACTA_0591 6466 7196" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16073581..16074941 /note="source:CACAO_M_E5899_F5_scaffold_2 21831 22692" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16074928..16075808) /note="source:INTACT329_F199_scaffold_2-int 1002 1911" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16075909..16075997) /note="source:INTACT118_F5_scaffold_9-int 4688 4779" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16075962..16076066 /note="source:INTACT597_F267_scaffold_2-int 11605 11710" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16076067..16076669 /note="source:CACAO_M_E14320_F89_scaffold_3 1 603" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16076659..16077455) /note="source:CACAO_M_E36501_F89_scaffold_5 1898 2696" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16077456..16080212 /note="source:CACAO_M_E4903_F15_scaffold_2 1 2760" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16080213..16082114 /note="source:CACAO_M_E12544_F89_scaffold_3 1111 3013" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16082115..16083166 /note="source:CACAO_M_E1841_F5_scaffold_1 24757 26516" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16083154..16085974) /note="source:INTACT10_F4_scaffold_6-int 1 2821" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16085975..16089511 /note="source:CACAO_M_E5899_F5_scaffold_2 14323 17869" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16089497..16089612 /note="source:CACAO_M_E86305_F7_scaffold_15 6208 6324" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16089511..16091754 /note="source:scaffold_4_CACTA_0493 2830 5171" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16091723..16093232 /note="source:CACAO_M_E5899_F5_scaffold_2 18066 19583" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16093234..16095689 /note="source:CACAO_M_E41832_F19_scaffold_5 1 2456" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16095690..16098485) /note="source:CACAO_M_E48452_F5_scaffold_6 160 2965" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16098348..16098802 /note="source:CACAO_M_E1841_F5_scaffold_1 746 1210" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16098802..16100385 /note="source:scaffold_5_CACTA_0591 7819 9394" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16100381..16100966) /note="source:CACAO_M_E5899_F5_scaffold_2 3978 4563" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16100958..16103412) /note="source:CACAO_M_E9898_F141_scaffold_2 628 3074" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16103413..16105161 /note="source:CACAO_M_E14537_F4_scaffold_3 5396 7201" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16105157..16105286 /note="source:scaffold_5_CACTA_0591 8628 8757" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16105286..16106784) /note="source:INTACT724_F4_scaffold_8-int 7479 8984" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16106783..16109913 /note="source:CACAO_M_E58324_F9_scaffold_9 18479 21589" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16109891..16113740 /note="source:INTACT41F_F338_scaffold_1-int 1398 5195" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16114441..16114644 /note="source:CACAO_M_E45504_F98_scaffold_6 1849 2067" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16114748..16115829 /note="source:INTACT41F_F338_scaffold_1-int 1351 2439" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16118546..16119354) /note="source:INTACT39F_F22_scaffold_1-int 6464 7434" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16119355..16119784) /note="source:CACAO_Again_on_E14_scaffold_1 2887 3296" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(16119785..16121479) /note="source:INTACT39F_F22_scaffold_1-int 4426 6463" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(16120341..16136510) /locus_tag="TCM_023572" /note="dbxref CacaoGD:Thecc1EG023572" mRNA complement(join(16120341..16120428,16120579..16121543, 16136491..16136510)) /locus_tag="TCM_023572" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023033t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.48 coverage" CDS complement(16120822..16121322) /locus_tag="TCM_023572" /note="paralog of Thecc1EG023033t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08656.1" /translation="MKRKRERKNRERGRAKRMVLLHFEEGKREFLLQFWRKKNAENFE AGKLIFLKLIAGIFEVSMADFGAENSRFLLLKLCEFAAGIFGGFAAIKGSKVLPICVE KLELFAANLFRKIVQKNWSCLYRKIGVVCYRKIGAVCVEKSELFAANLCRKIGQHCAA NLREKK" mobile_element complement(16121570..16122332) /note="source:INTACT39F_F22_scaffold_1-int 3568 4308" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16126391..16129320 /note="source:CACAO_M_E41853_F33_scaffold_5 1 2930" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16137763..16140152 /note="source:CACAO_M_S_E64023_F13_scaffold_5 13491 15884" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16138810..16140570) /note="source:CACAO_M_E69760_F9_scaffold_9 6707 8469" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16143861..16144867 /note="source:scaffold_8_CACTA_0858 7554 8565" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16144948..16148053 /note="source:CACAO_M_S_E63914_F7_scaffold_5 1 3106" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16148250..16148334 /note="source:scaffold_8_CACTA_0859 658 744" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16148878..16149915) /note="source:scaffold_8_CACTA_0858 7724 8747" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16150025..16152051) /note="source:CACAO_M_S_E98116_F164_scaffold_8 13402 15415" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16153861..16154663 /note="source:scaffold_8_CACTA_0858 2922 3690" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16154235..16154758) /note="source:CACAO_M_S_E119191_F3_scaffold_9 5064 5623" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16154759..16154846) /note="source:CACAO_M_E70891_F369_scaffold_10 16952 17029" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16155369..16155420) /note="source:CACAO_M_E4631_F369_scaffold_2 9952 10002" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16155426..16155624 /note="source:scaffold_3_CACTA_0382 10417 10623" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16157073..16157452 /note="source:INTACT701_F305_scaffold_10-int 2255 2662" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16161658..16161715) /note="source:CACAO_M_E43428_F369_scaffold_5 1278 1339" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16162155..16162204 /note="source:CACAO_M_E43428_F369_scaffold_5 1276 1325" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16162679..16162879 /note="source:scaffold_3_CACTA_0382 10414 10645" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16164313..16164708 /note="source:INTACT701_F305_scaffold_10-int 13185 13591" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16164639..16164803) /note="source:CACAO_Again_on_E14_scaffold_1 696 852" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(16164718..16164805) /note="source:CACAO_M_E24389_F60_scaffold_4 4458 5487" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16164806..16165837 /note="source:scaffold_8_CACTA_0858 3847 4853" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16165829..16165898 /note="source:CACAO_M_E4631_F369_scaffold_2 7835 7906" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16165838..16167152) /note="source:CACAO_M_E5800_F12_scaffold_2 10253 11549" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16167136..16167784) /note="source:INTACT845F_F369_scaffold_5-int 1 650" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16167785..16168492) /note="source:CACAO_M_E49885_F60_scaffold_7 6470 7180" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16168464..16168626) /note="source:CACAO_M_E5326_F22_scaffold_2 12215 12371" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16168489..16170549 /note="source:CACAO_M_E47740_F12_scaffold_6 4097 6092" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16170547..16174166) /note="source:CACAO_M_E24389_F60_scaffold_4 152 3730" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(16171410..16195043) /locus_tag="TCM_023575" /note="dbxref CacaoGD:Thecc1EG023575" mRNA complement(join(16171410..16171474,16178037..16178401, 16178519..16178740,16178876..16179199,16179280..16179459, 16180271..16180472,16194847..16195043)) /locus_tag="TCM_023575" /product="DHHC-type zinc finger family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g30380.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023699t2" /inference="similar to AA sequence:Phytozome:POPTR_0016s02590.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4332t1" mobile_element complement(16174166..16175636) /note="source:CACAO_M_S_E7105_F60_scaffold_2 2 1476" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(16178114..16178401,16178519..16178740, 16178876..16179199,16179280..16179459,16180271..16180402)) /locus_tag="TCM_023575" /note="paralog of Thecc1EG023699t2" /codon_start=1 /product="DHHC-type zinc finger family protein, putative" /protein_id="EOY08657.1" /db_xref="Phytozome:POPTR_0016s02590.1" /db_xref="TAIR:AT5G05070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5PNZ1" /translation="MKDRKKRTMNRNKSQVYDSSSVDMERCPPKPIPKRIYQVWKGNN KFCCGGRMIFGPDASSLFLTSFLIGCPAIAFCIKVAVITNQDDPVFNYHAFLGGLILT VLDFGFLLLTCSRDPGIIPRNLKSPPPESSEDSINYMTKSASMEWVSSKTPNLKIPRI KNVMVNGQTVKVKFCETCLLYRPPRASHCSICNNCVQRFDHHCPWVGQCIGARNYPFF LCFISSSTALCIYVFVCSWVNILGQHCGLWTAMSRDILSVILIVYCFIAVWFVGGLTV FHFHLIFTNQTTYENFRYGYDKKENPFNKGILNNLKEVFLSKIPPAMINFRAWTADDD FPPVSTIRDVSGAGDFIASKEKFDMDMDSTRVPNSLQRFDFGGFDNI" mobile_element 16182614..16182980 /note="source:CACAO_M_E48538_F49_scaffold_6 12214 12580" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16183083..16183413 /note="source:CACAO_M_S_E15173_F4_scaffold_2 6612 6943" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16183484..16184160 /note="source:INTACT95_F143_scaffold_9-int 1015 1682" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16184124..16186206) /note="source:INTACT224_F176_scaffold_8-int 10837 12266" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16186200..16187787 /note="source:INTACT39F_F22_scaffold_1-int 9290 10290" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16187780..16189736 /note="source:INTACT39F_F22_scaffold_1-int 5481 7434" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16189724..16195627) /note="source:INTACT224_F176_scaffold_8-int 4933 10860" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16195602..16195701 /note="source:CACAO_M_E5326_F22_scaffold_2 19792 19894" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16195620..16195899) /note="source:INTACT41F_F338_scaffold_1-int 2333 2612" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16195918..16197719 /note="source:INTACT93F_F345_scaffold_2-int 830 2638" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16197706..16197757 /note="source:INTACT1295F_F378_scaffold_7-int 10207 10263" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16197720..16198012) /note="source:CACAO_M_E5326_F22_scaffold_2 20708 21018" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16198013..16203952 /note="source:CACAO_M_E41888_F152_scaffold_5 1 5940" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16203953..16204817) /note="source:INTACT224_F176_scaffold_8-int 4171 4830" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16204679..16204834 /note="source:INTACT695_F301_scaffold_5-int 4323 4478" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16204817..16204871 /note="source:CACAO_M_E48538_F49_scaffold_6 12783 12837" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16204872..16208979 /note="source:CACAO_M_S_E84376_F22_scaffold_6 9767 15935" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16209986..16211600) /note="source:CACAO_M_S_E109853_F60_scaffold_9 4913 6512" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16211606..16213173) /note="source:INTACT41F_F338_scaffold_1-int 887 2439" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16213178..16216173 /note="source:CACAO_M_S_E63935_F7_scaffold_5 1 2996" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16216174..16216253 /note="source:INTACT224_F176_scaffold_8-int 12707 12788" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16216480..16217206 /note="source:CACAO_M_S_E19200_F389_scaffold_3 8508 9234" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16217209..16217299) /note="source:CACAO_M_S_E109853_F60_scaffold_9 4820 4910" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16217300..16219241) /note="source:CACAO_M_S_E7818_F60_scaffold_2 9702 11644" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16219246..16220367 /note="source:INTACT180_F13_scaffold_3-int 3 1120" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16220368..16221033) /note="source:INTACT695_F301_scaffold_5-int 5195 5861" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16221034..16224890 /note="source:INTACT649F_F368_scaffold_5-int 1 3902" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16224900..16225710 /note="source:CACAO_M_E4704_F345_scaffold_2 7590 8404" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16226621..16227657) /note="source:INTACT223_F175_scaffold_5-int 6207 7245" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16227657..16227808) /note="source:INTACT95_F143_scaffold_9-int 14933 15083" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16227809..16230760) /note="source:INTACT807_F54_scaffold_3-int 1 2894" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16230936..16231952) /note="source:INTACT95_F143_scaffold_9-int 1 1019" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16231953..16235403 /note="source:CACAO_M_E4900_F368_scaffold_2 3936 7358" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16235420..16235453 /note="source:INTACT649F_F368_scaffold_5-int 13518 13551" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16235496..16236136) /note="source:CACAO_M_E14113_F106_scaffold_3 12728 13375" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16236880..16238168 /note="source:INTACT649F_F368_scaffold_5-int 718 2008" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16238170..16240200) /note="source:INTACT597_F267_scaffold_2-int 581 2590" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16240200..16240331 /note="source:CACAO_M_E14113_F106_scaffold_3 213 344" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16242167..16244399 /note="source:CACAO_M_S_E4591_F5_scaffold_1 19564 22974" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16248904..16249195 /note="source:scaffold_4_CACTA_0494 27 325" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16249793..16250367 /note="source:scaffold_4_CACTA_0494 1 584" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16250380..16251857 /note="source:CACAO_M_E14113_F106_scaffold_3 339 1812" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16252750..16254360 /note="source:CACAO_M_E14113_F106_scaffold_3 3948 5601" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16254361..16254614 /note="source:CACAO_M_E14113_F106_scaffold_3 1807 2057" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16255016..16264979 /note="source:INTACT363_F7_scaffold_9-int 1 9921" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16265322..16265692 /note="source:scaffold_2_CACTA_0261 419 798" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16266017..16266081 /note="source:CACAO_M_E14113_F106_scaffold_3 23359 23429" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16266201..16266451) /note="source:CACAO_M_S_E4591_F5_scaffold_1 20191 20444" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16266449..16267181 /note="source:CACAO_M_E24592_F195_scaffold_4 19417 20144" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16267184..16277619 /note="source:INTACT498_F231_scaffold_5-int 1 10436" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16277617..16279301 /note="source:CACAO_M_E24592_F195_scaffold_4 1 2726" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16280230..16283051 /note="source:CACAO_M_E1192_F15_scaffold_1 5 2826" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16282900..16283069) /note="source:INTACT901F_F95_scaffold_6-int 8384 8562" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16285593..16288569) /note="source:INTACT74_F134_scaffold_5-int 1 2958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16289342..16289662 /note="source:CACAO_M_E1841_F5_scaffold_1 8533 8852" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16289839..16292748 /note="source:CACAO_M_E41912_F81_scaffold_5 1 2910" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16292788..16293017 /note="source:CACAO_M_S_E7818_F60_scaffold_2 6011 6225" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16295765..16296314 /note="source:CACAO_M_S_E7818_F60_scaffold_2 5125 5674" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16300564..16303311 /note="source:CACAO_M_E12446_F15_scaffold_3 1 2976" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16303180..16303327) /note="source:CACAO_M_E3287_F15_scaffold_1 7849 8000" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16304469..16304513 /note="source:CACAO_M_S_E83372_F14_scaffold_6 21755 21800" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16304887..16307355) /note="source:CACAO_M_E36294_F51_scaffold_5 11352 13805" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16308750..16309074 /note="source:INTACT591_F264_scaffold_1-int 20604 20914" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16309075..16319510 /note="source:INTACT845F_F369_scaffold_5-int 1 10436" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16319511..16319834 /note="source:INTACT591_F264_scaffold_1-int 20910 21261" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16320864..16322023 /note="source:scaffold_8_CACTA_0859 494 1628" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16322717..16322773 /note="source:INTACT1372F_F96_scaffold_8-int 10429 10473" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16322725..16322763) /note="source:CACAO_M_E35511_F5_scaffold_5 2298 2336" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16322785..16323024 /note="source:scaffold_8_CACTA_0859 16530 16765" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16322969..16323738) /note="source:CACAO_M_E1841_F5_scaffold_1 15889 16711" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16323850..16326765) /note="source:CACAO_M_E43672_F60_scaffold_5 10452 13402" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16326761..16326894) /note="source:INTACT280_F60_scaffold_5-int 10407 10540" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16326965..16337975 /note="source:CACAO_M_E41928_F52_scaffold_5 1 11011" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16337997..16338061) /note="source:CACAO_M_E1841_F5_scaffold_1 15651 15713" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16338108..16339101) /note="source:CACAO_M_E58324_F9_scaffold_9 9232 10223" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16339099..16341122 /note="source:INTACT162_F157_scaffold_6-int 8010 10071" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16341123..16343458) /note="source:scaffold_4_CACTA_0503 3861 6180" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16344128..16345004 /note="source:CACAO_M_E3626_F245_scaffold_1 2051 2940" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16345019..16345477 /note="source:CACAO_M_S_E5046_F335_scaffold_1 1020 1479" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16345476..16348428 /note="source:CACAO_M_E41937_F143_scaffold_5 1 2953" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16348429..16348463) /note="source:CACAO_M_E52239_F256_scaffold_7 8118 8156" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16348839..16349501) /note="source:CACAO_M_E58324_F9_scaffold_9 7669 8330" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16349501..16351576 /note="source:scaffold_6_CACTA_0702 9475 11558" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16351596..16353728 /note="source:CACAO_M_E59164_F88_scaffold_9 8134 10328" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16353739..16356482) /note="source:CACAO_M_E23752_F369_scaffold_4 1 2730" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16356483..16356975 /note="source:CACAO_M_E5284_F369_scaffold_2 2216 2708" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16356978..16357058 /note="source:CACAO_M_S_E5046_F335_scaffold_1 20784 20864" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16358492..16359022 /note="source:scaffold_6_CACTA_0707 3192 4605" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16359023..16359063) /note="source:CACAO_M_E11415_F328_scaffold_2 13788 13830" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16359064..16364320 /note="source:INTACT776_F83_scaffold_2-int 1 5217" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16359331..16359382 /note="source:scaffold_6_CACTA_0707 4606 4749" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16364528..16366670 /note="source:CACAO_M_E11669_F244_scaffold_2 1 2118" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16366497..16367060) /note="source:CACAO_M_E12258_F281_scaffold_3 1 563" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16367061..16368768 /note="source:scaffold_6_CACTA_0707 4745 6470" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16369814..16371278 /note="source:CACAO_M_E84368_F4_scaffold_10 2327 3800" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16371279..16372837 /note="source:CACAO_M_E22588_F143_scaffold_3 1 1551" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16372842..16379820 /note="source:INTACT667_F51_scaffold_5-int 1895 8848" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16379819..16382005 /note="source:INTACT667_F51_scaffold_5-int 9413 11597" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16383444..16383928) /note="source:CACAO_M_E71405_F316_scaffold_10 4761 5244" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16383888..16386159 /note="source:CACAO_M_E22588_F143_scaffold_3 722 2994" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16386160..16387202 /note="source:CACAO_M_S_E4534_F4_scaffold_1 5966 7001" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16389601..16390420 /note="source:CACAO_M_E52239_F256_scaffold_7 21597 22438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16391446..16393301 /note="source:CACAO_M_S_E4534_F4_scaffold_1 8051 9879" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16393294..16394078) /note="source:INTACT118_F5_scaffold_9-int 11603 12403" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16394183..16395964 /note="source:CACAO_M_E44310_F87_scaffold_6 954 2732" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16395965..16397026 /note="source:CACAO_M_E84368_F4_scaffold_10 804 1858" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16397505..16398952) /note="source:CACAO_M_E52654_F15_scaffold_7 1404 2853" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16399053..16400235) /note="source:CACAO_M_E42130_F15_scaffold_5 1 1184" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16401275..16401320) /note="source:CACAO_M_E24592_F195_scaffold_4 3833 3879" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16401280..16402409) /note="source:scaffold_4_CACTA_0493 498 1625" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16402388..16405093) /note="source:CACAO_M_S_E14932_F233_scaffold_2 1 2753" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16405743..16413404) /note="source:INTACT224_F176_scaffold_8-int 4862 12269" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16413409..16414295) /note="source:INTACT424_F211_scaffold_12-int 7975 8857" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16414296..16417275 /note="source:CACAO_M_E41962_F143_scaffold_5 1 2980" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16417283..16419084) /note="source:CACAO_M_S_E14932_F233_scaffold_2 10042 11941" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16419082..16420180 /note="source:scaffold_9_CACTA_0929 8796 9892" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16420182..16422398 /note="source:INTACT506_F233_scaffold_3-int 5871 8088" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16422439..16424140) /note="source:CACAO_M_S_E14932_F233_scaffold_2 1 2220" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16424141..16424680) /note="source:INTACT224_F176_scaffold_8-int 4169 4701" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16426959..16428960) /note="source:CACAO_M_E11604_F368_scaffold_2 1 2017" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16436364..16436470) /note="source:scaffold_5_CACTA_0596 5464 5575" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16443118..16443173) /note="source:CACAO_M_E1841_F5_scaffold_1 15705 15763" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16444317..16445514) /note="source:CACAO_M_E35511_F5_scaffold_5 21526 22723" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16446236..16448799 /note="source:CACAO_M_E1699_F369_scaffold_1 1 2674" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16451159..16476036 /note="source:CACAO_M_S_E64023_F13_scaffold_5 1 24878" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16478034..16478546 /note="source:scaffold_8_CACTA_0859 16514 17019" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16478547..16480556 /note="source:INTACT132_F12_scaffold_9-int 1 2095" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16480538..16485919) /note="source:INTACT506_F233_scaffold_3-int 4701 14652" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16485920..16486181) /note="source:CACAO_M_E36274_F7_scaffold_5 2752 3016" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16486182..16496942 /note="source:INTACT161_F156_scaffold_5-int 1 10761" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16496943..16501955) /note="source:CACAO_M_S_E109876_F7_scaffold_9 4577 9671" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(16497977..16528263) /locus_tag="TCM_023606" /note="dbxref CacaoGD:Thecc1EG023606" mRNA complement(join(16497977..16498241,16498922..16498997, 16502884..16503245,16503367..16503731,16528253..16528263)) /locus_tag="TCM_023606" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003881t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.15 coverage" mobile_element 16502059..16503079 /note="source:INTACT715_F7_scaffold_5-int 5468 6468" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16502465..16506401) /note="source:INTACT506_F233_scaffold_3-int 1 3930" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(16502943..16503245,16503367..16503522)) /locus_tag="TCM_023606" /note="paralog of Thecc1EG003881t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08658.1" /translation="MLSLARFQLTFRVMNVYQDVVVVVTGSMGVSGLDNSIGIRAFGF KVILKIYNVLRYAGDTHTISRRDSSPDASHSIREGSLDSTAKSRWQPKPSSPKSAYSN NINISMRDSLFRESKEYVKEMGKLRIAEGGIRPRKGVSVVQHYPPGCGVM" mobile_element 16506405..16507669 /note="source:CACAO_M_S_E14932_F233_scaffold_2 8243 9504" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16507657..16509121) /note="source:INTACT506_F233_scaffold_3-int 1958 3426" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16509123..16510885) /note="source:INTACT506_F233_scaffold_3-int 1 1779" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16510886..16517495 /note="source:CACAO_M_E59641_F12_scaffold_9 13243 18419" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16517495..16518914 /note="source:CACAO_M_E41987_F9_scaffold_5 1 1420" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16518915..16520350 /note="source:CACAO_M_E59641_F12_scaffold_9 18414 19843" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16523712..16524030) /note="source:scaffold_2_CACTA_0253 7207 7544" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16527911..16528343) /note="source:scaffold_2_CACTA_0253 6788 7219" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16528344..16530328) /note="source:CACAO_M_E85923_F17_scaffold_12 7068 9074" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16530424..16531871 /note="source:INTACT741_F17_scaffold_3-int 4977 6393" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16531871..16533598 /note="source:INTACT595F_F13_scaffold_4-int 2445 4118" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16533625..16536413 /note="source:CACAO_M_S_E64048_F87_scaffold_5 1 2789" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16536478..16537236 /note="source:CACAO_M_E32900_F13_scaffold_4 4139 4898" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16537237..16539959 /note="source:INTACT741_F17_scaffold_3-int 6388 9130" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16539957..16541700 /note="source:INTACT85F_F12_scaffold_2-int 8777 10603" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16541288..16542517) /note="source:CACAO_M_E42809_F5_scaffold_5 5151 5970" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16542512..16543045 /note="source:INTACT741_F17_scaffold_3-int 992 1540" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16543047..16543584 /note="source:CACAO_M_S_E89272_F5_scaffold_8 15025 15559" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16543851..16546155 /note="source:CACAO_M_S_E64832_F14_scaffold_5 1933 4309" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16547328..16549024 /note="source:CACAO_M_E35879_F3_scaffold_5 1 1695" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16550423..16550604) /note="source:CACAO_M_S_E83372_F14_scaffold_6 4568 4755" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16550629..16550989) /note="source:CACAO_M_S_E83372_F14_scaffold_6 4384 4755" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16550990..16551498 /note="source:CACAO_M_E41997_F98_scaffold_5 1 509" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16552013..16553736 /note="source:CACAO_M_E41997_F98_scaffold_5 510 2233" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16553738..16554407) /note="source:CACAO_M_S_E83372_F14_scaffold_6 3713 4387" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16554410..16555304) /note="source:INTACT481_F226_scaffold_1-int 10543 11427" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16555315..16558051 /note="source:CACAO_M_S_E4984_F231_scaffold_1 3 2720" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16558202..16560249) /note="source:scaffold_2_CACTA_0253 5942 7993" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16560250..16562955 /note="source:INTACT296_F13_scaffold_9-int 11778 14441" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16562956..16563189) /note="source:CACAO_Mariner_E229_scaffold_9 10882 11122" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 16567623..16568557 /note="source:CACAO_M_E14537_F4_scaffold_3 998 1932" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16568758..16569088 /note="source:CACAO_M_E35879_F3_scaffold_5 1 331" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16569089..16571861) /note="source:CACAO_M_S_E38130_F233_scaffold_4 1 2786" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16571862..16572286) /note="source:INTACT7_F3_scaffold_8-int 949 1372" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16572287..16575059) /note="source:CACAO_M_E73030_F79_scaffold_10 1 2768" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16575061..16577573) /note="source:CACAO_M_S_E16543_F3_scaffold_2 4940 7450" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16579894..16580102) /note="source:INTACT7_F3_scaffold_8-int 4725 4941" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16580102..16580450) /note="source:CACAO_M_S_E15347_F33_scaffold_2 8163 8511" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16589216..16589931 /note="source:CACAO_M_E45504_F98_scaffold_6 4741 5456" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16590032..16590660 /note="source:CACAO_M_E5569_F322_scaffold_2 4761 5389" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16595960..16596247) /note="source:CACAO_M_S_E15347_F33_scaffold_2 5809 6096" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16596247..16598991) /note="source:INTACT7_F3_scaffold_8-int 2002 4730" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16598992..16601696 /note="source:CACAO_M_E42011_F369_scaffold_5 1 2705" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16601697..16601895) /note="source:INTACT7_F3_scaffold_8-int 1809 2006" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16601891..16602252 /note="source:CACAO_M_S_E119615_F3_scaffold_9 17286 17640" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16602425..16604073 /note="source:CACAO_M_E49559_F88_scaffold_7 6484 8159" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16602437..16604858 /note="source:INTACT319_F3_scaffold_1-int 4243 6833" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16604859..16606053) /note="source:INTACT7_F3_scaffold_8-int 6309 7502" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16608182..16611096) /note="source:CACAO_M_E70051_F86_scaffold_10 1 2926" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16611098..16611525) /note="source:CACAO_M_E35511_F5_scaffold_5 9367 9814" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16611670..16613026) /note="source:CACAO_M_E35511_F5_scaffold_5 8738 10101" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 16613060..16625050 /locus_tag="TCM_023614" /note="dbxref CacaoGD:Thecc1EG023614" mRNA join(16613060..16613073,16615356..16616127, 16617111..16617261,16617611..16617740,16617909..16619395, 16619461..16619595,16621214..16621338,16622213..16622271, 16624851..16625050) /locus_tag="TCM_023614" /product="DNA/RNA polymerases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400044090.14" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018248t1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.29 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc3Loc1916t2_G2" mobile_element complement(16613284..16613802) /note="source:CACAO_M_S_E7818_F60_scaffold_2 20989 21516" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 16613369..16624044 /locus_tag="TCM_023615" /note="dbxref CacaoGD:Thecc1EG023615" mRNA join(16613369..16613515,16614633..16614858, 16614955..16615216,16623708..16624044) /locus_tag="TCM_023615" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023328t1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.46 coverage" mobile_element complement(16613780..16613890) /note="source:CACAO_M_S_E7818_F60_scaffold_2 5012 5121" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16613918..16613951) /note="source:CACAO_M_S_E7818_F60_scaffold_2 4785 4818" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16613955..16614295 /note="source:CACAO_M_S_E31935_F231_scaffold_3 1 344" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(16614657..16614858,16614955..16615193) /locus_tag="TCM_023615" /note="paralog of Thecc1EG023328t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08660.1" /translation="MPPKTRAASRRAGEQDAPIEMADRPRASTQRGRGRRGRVTRPVG LDTPVSRQEEGQSSGDVDRHPAREGRPTVQESPSSQGQADHQHHEEERGHLDISLPDF LKLKPPTFTGSDASEKPQVFLDKMEKICKSLGCSSVRSVELAAF" CDS join(16615365..16616127,16617111..16617261, 16617611..16617740,16617909..16619395,16619461..16619595, 16621214..16621338,16622213..16622235) /locus_tag="TCM_023614" /note="paralog of Thecc1EG018248t1" /codon_start=1 /product="DNA/RNA polymerases superfamily protein" /protein_id="EOY08659.1" /translation="MTVSEYDIKFTQLARYAPYLVSTEEMKIQRFVDGLVEPLFRAVA SRDFTTYSAAVDRAQRIEMRTSESRAARDREKRGKTEGYQGRRDFSSGGSSSSRQGPQ RDSRFPQQGSDAPGANIRVGQRTFSSRRQQDSRQSSQVIRSCDTCGRRHSGRCFLTTK TCYGCGQPGHIRRDCPMAHQSPDSVRGSTQPASSAPSVAVSSGREVSGSRGRGADTSS QGRPSGSGHQSSIGRGQARVFALTQQEAQTSNAVVSAFMDLMNRVFKPYLDKFVVVFI DDILIYSKSREEHEQHLKIVLQILREHRFFEKLKACLTTAPVLSLPQGTRGYTMLCDA SGVGLGCVLMQHGKQRDLNLRQRRWMELLKDYDCTILHHPGKANVVADALSRKSMGSL AHISIGRRSLVKEIHSLGDIGVRLEVAETNALLAHFRVRPILMDRIKEAQSKDEFVIK ALEDPRGKKGKMFTKGTDGVLRYGTRLYVPDSDGLRREILEEAHMAAYVIHPGATKMY QDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWEHIAMDFV TGLPRTNGGYDSIWIVVDRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHGIPISIVS DRGAQFTSRFWGKLQEALGTKLDFSTAFHPQTDGQSEWTIQTLEDMLRACVIDLGVRW EQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCRSPIGWLEVGERKLLGPEFVQDATEK IHMIRQRMLTAQSRQKSYADNRRRDLEFQVGDHVFLKVSPTKGVMRFGKKGKLSPRYI GPFEILEKVGVVAYRLALPPDLSNIHPVFHVSMLRKYNPDPSHVIRQVKKLRSKDVAS VKVLWRNHTSEEVTWEAEDEMRTKHPHLFDMSRDNIVNSSTLLFVKVVRHPEKAKELR LRTISQSSPEIRIFDTYQEVADN" mobile_element 16617501..16621056 /note="source:CACAO_M_E45504_F98_scaffold_6 5769 9325" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16622556..16624774 /note="source:CACAO_M_S_E31935_F231_scaffold_3 448 2646" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16624689..16624784) /note="source:CACAO_M_S_E64608_F12_scaffold_5 2944 3035" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16624776..16624942) /note="source:CACAO_M_S_E7818_F60_scaffold_2 4619 4786" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16624943..16628740) /note="source:INTACT607_F3_scaffold_4-int 10037 13859" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16628741..16629106 /note="source:CACAO_M_S_E1488_F231_scaffold_1 1 375" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16629102..16629907) /note="source:CACAO_M_S_E85177_F5_scaffold_7 18668 19551" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16629114..16629910 /note="source:INTACT676_F297_scaffold_3-int 8385 9371" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16629932..16632626 /note="source:CACAO_M_E4704_F345_scaffold_2 7839 10523" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16632627..16633627) /note="source:CACAO_M_S_E5046_F335_scaffold_1 47 1067" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16633628..16636313 /note="source:CACAO_M_S_E64089_F369_scaffold_5 1 2686" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16636315..16636382) /note="source:INTACT30F_F12_scaffold_1-int 11983 12048" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16639754..16641639) /note="source:INTACT280_F60_scaffold_5-int 17577 19484" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16644198..16644583 /note="source:CACAO_M_S_E52921_F60_scaffold_5 1842 2229" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16651325..16655750) /note="source:CACAO_M_S_E109853_F60_scaffold_9 6509 15162" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16655748..16655889) /note="source:INTACT146F_F14_scaffold_2-int 5583 5725" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16655899..16658732 /note="source:CACAO_M_E70239_F392_scaffold_10 1 2827" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16658733..16659392 /note="source:INTACT146F_F14_scaffold_2-int 9819 10477" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16659385..16660182 /note="source:INTACT146F_F14_scaffold_2-int 13368 14227" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16660852..16662037) /note="source:scaffold_3_CACTA_0382 9598 10733" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16661282..16662322) /note="source:CACAO_M_S_E109853_F60_scaffold_9 4820 5855" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16662323..16663129 /note="source:CACAO_M_S_E52921_F60_scaffold_5 2225 3035" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 16668620..16674661 /locus_tag="TCM_023620" /note="dbxref CacaoGD:Thecc1EG023620" mRNA join(16668620..16668687,16673626..16674661) /locus_tag="TCM_023620" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.15 coverage" mobile_element 16668709..16671274 /note="source:INTACT30F_F12_scaffold_1-int 11996 14709" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16668711..16670431) /note="source:CACAO_M_S_E33435_F144_scaffold_4 909 2665" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS 16674316..16674531 /locus_tag="TCM_023620" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08661.1" /translation="MPPDESRLQVPLFTYSWELPMPPYINRGFKSPFTYSWELPMKPN INWGFWFPFLNQISIIDNYYFVHKDHT" mobile_element complement(16678343..16679907) /note="source:INTACT280_F60_scaffold_5-int 4569 6134" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16679892..16680285) /note="source:CACAO_M_E1841_F5_scaffold_1 16267 16682" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16680284..16680971 /note="source:INTACT189_F49_scaffold_5-int 17861 18547" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16681044..16683991 /note="source:CACAO_M_S_E52113_F15_scaffold_5 1 2948" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16684121..16684312 /note="source:INTACT146F_F14_scaffold_2-int 16547 16731" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16684313..16687244 /note="source:CACAO_M_E42051_F33_scaffold_5 1 2932" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16687245..16688170 /note="source:INTACT189_F49_scaffold_5-int 18771 19705" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16688171..16688553) /note="source:CACAO_M_E1841_F5_scaffold_1 15889 16271" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16691188..16691282) /note="source:CACAO_M_E1841_F5_scaffold_1 9632 9726" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16691283..16695836) /note="source:INTACT280_F60_scaffold_5-int 1 4573" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16696058..16698834) /note="source:CACAO_M_S_E85957_F12_scaffold_7 11238 13969" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16700864..16703792 /note="source:CACAO_M_E42059_F80_scaffold_5 1 2929" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16704161..16706290) /note="source:INTACT95_F143_scaffold_9-int 5276 7407" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16706291..16708826 /note="source:CACAO_M_E42065_F259_scaffold_5 1 2536" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16708827..16709695) /note="source:CACAO_M_E9677_F7_scaffold_2 9864 10731" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16710154..16710700) /note="source:CACAO_M_S_E7818_F60_scaffold_2 5125 5674" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16710707..16710828 /note="source:scaffold_8_CACTA_0859 1344 1463" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16710961..16711113 /note="source:CACAO_M_S_E85957_F12_scaffold_7 14645 14799" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16711632..16713397 /note="source:CACAO_M_E35511_F5_scaffold_5 8739 10520" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16714762..16716283) /note="source:CACAO_M_S_E7818_F60_scaffold_2 21002 22518" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16716279..16716333) /note="source:CACAO_M_S_E7818_F60_scaffold_2 5066 5121" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16717722..16718503 /note="source:CACAO_M_S_E7818_F60_scaffold_2 5114 5905" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16718872..16719408 /note="source:CACAO_M_S_E7818_F60_scaffold_2 19489 20010" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16719541..16720076 /note="source:CACAO_M_S_E7818_F60_scaffold_2 6587 7117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16720232..16723186 /note="source:CACAO_M_S_E7818_F60_scaffold_2 7544 10527" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16723185..16724560 /note="source:CACAO_M_E11098_F15_scaffold_2 6239 7626" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16726421..16727532 /note="source:CACAO_M_S_E7818_F60_scaffold_2 18198 19312" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16727777..16727859) /note="source:scaffold_3_CACTA_0382 1854 1936" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16727906..16728486 /note="source:CACAO_M_S_E7818_F60_scaffold_2 5986 6589" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16729837..16731176 /note="source:CACAO_M_E35511_F5_scaffold_5 8740 10094" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16731023..16731202) /note="source:CACAO_M_S_E7818_F60_scaffold_2 424 608" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16736859..16746082) /note="source:CACAO_M_E58819_F24_scaffold_9 4879 14103" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16744083..16747609 /note="source:INTACT213F_F15_scaffold_3-int 7346 10656" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16747650..16750553 /note="source:CACAO_M_S_E64145_F83_scaffold_5 1 2904" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16755347..16755468) /note="source:CACAO_M_E14113_F106_scaffold_3 3217 3339" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16755451..16757055 /note="source:CACAO_M_S_E84376_F22_scaffold_6 11356 12957" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16757094..16757154 /note="source:CACAO_M_E5899_F5_scaffold_2 8903 8963" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16757365..16760397 /note="source:CACAO_M_E42074_F201_scaffold_5 1 2988" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16760401..16762210 /note="source:CACAO_M_E42074_F201_scaffold_5 1 1806" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16761048..16762342) /note="source:INTACT403F_F355_scaffold_4-int 5741 7033" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16762737..16763281 /note="source:INTACT537_F22_scaffold_2-int 12643 13188" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16763377..16763805) /note="source:CACAO_M_S_E6875_F7_scaffold_2 13983 14410" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16763841..16763913) /note="source:CACAO_M_S_E31774_F7_scaffold_3 4966 5039" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16764971..16765708 /note="source:CACAO_M_E5899_F5_scaffold_2 9752 10502" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16766210..16768638) /note="source:CACAO_M_S_E19828_F19_scaffold_3 7239 8918" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16769282..16770068 /note="source:INTACT172_F47_scaffold_2-int 1745 2549" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16770075..16773375 /note="source:CACAO_M_E14113_F106_scaffold_3 14997 18346" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16773380..16774568 /note="source:CACAO_M_E14113_F106_scaffold_3 11260 12422" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16774629..16774984 /note="source:INTACT172_F47_scaffold_2-int 1619 1977" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16774986..16775445) /note="source:INTACT172_F47_scaffold_2-int 2717 3172" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16775420..16775538) /note="source:INTACT172_F47_scaffold_2-int 2721 2822" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16776044..16776879) /note="source:INTACT172_F47_scaffold_2-int 1628 2450" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16777289..16777737 /note="source:scaffold_2_CACTA_0256 13538 13988" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16780869..16781894 /note="source:INTACT403F_F355_scaffold_4-int 140 1173" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16784905..16793263) /note="source:INTACT789_F335_scaffold_1-int 1222 8857" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16792898..16794564 /note="source:CACAO_M_S_E5046_F335_scaffold_1 936 2391" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16796768..16799771 /note="source:CACAO_M_S_E64163_F7_scaffold_5 1 3004" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16801981..16802207 /note="source:INTACT280_F60_scaffold_5-int 1 227" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16804762..16804932 /note="source:CACAO_M_E84995_F60_scaffold_10 10435 10605" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16805918..16806318 /note="source:CACAO_M_E58601_F7_scaffold_9 4539 4948" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16807613..16808413 /note="source:CACAO_M_E84995_F60_scaffold_10 385 1193" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16808488..16809016 /note="source:CACAO_M_E84995_F60_scaffold_10 1162 1739" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16811946..16812036) /note="source:scaffold_4_CACTA_0493 1366 1455" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16812037..16814688 /note="source:CACAO_M_S_E64170_F231_scaffold_5 1 2638" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16814689..16814769) /note="source:scaffold_4_CACTA_0493 1274 1354" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16814785..16815123 /note="source:scaffold_4_CACTA_0493 3688 4058" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16816673..16816879 /note="source:scaffold_2_CACTA_0260 713 919" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16819691..16821643) /note="source:INTACT95_F143_scaffold_9-int 1013 2964" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16821704..16821918) /note="source:CACAO_M_S_E15173_F4_scaffold_2 6736 6949" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16821770..16821913) /note="source:INTACT95_F143_scaffold_9-int 888 1023" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16821914..16824916 /note="source:CACAO_M_S_E50813_F7_scaffold_4 1 3006" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16824917..16825803) /note="source:CACAO_M_S_E15173_F4_scaffold_2 5863 6745" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16829262..16829331 /note="source:CACAO_M_E86361_F7_scaffold_15 7523 7593" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16831226..16831730 /note="source:scaffold_4_CACTA_0493 3889 4440" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16834414..16834484 /note="source:INTACT551_F248_scaffold_7-int 11067 11135" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16835879..16838948 /note="source:scaffold_8_CACTA_0859 1631 4719" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16838947..16840089 /note="source:CACAO_M_E3634_F15_scaffold_1 3150 4293" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16840090..16840949) /note="source:INTACT204_F15_scaffold_7-int 5532 6392" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16840946..16843734) /note="source:INTACT95_F143_scaffold_9-int 6350 9055" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16843735..16846349 /note="source:CACAO_M_S_E64181_F231_scaffold_5 1 2615" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16846444..16848396 /note="source:INTACT95_F143_scaffold_9-int 1015 2964" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16852370..16852486 /note="source:scaffold_5_CACTA_0591 6357 6475" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16854072..16854109) /note="source:CACAO_M_E58601_F7_scaffold_9 5854 5892" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16855853..16858600) /note="source:INTACT599_F268_scaffold_9-int 8234 10979" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16859959..16861093 /note="source:CACAO_M_S_E89272_F5_scaffold_8 7069 8217" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16861095..16862278 /note="source:CACAO_M_E14113_F106_scaffold_3 18718 19902" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16862282..16864135 /note="source:CACAO_M_E42107_F4_scaffold_5 1 1854" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16864136..16864698 /note="source:CACAO_M_E14113_F106_scaffold_3 19844 20422" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16864779..16866429) /note="source:CACAO_M_S_E33139_F368_scaffold_4 8881 10486" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16866430..16869400 /note="source:CACAO_M_E42108_F245_scaffold_5 1 2971" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16869401..16874118 /note="source:INTACT172_F47_scaffold_2-int 3166 7931" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16876167..16876633 /note="source:CACAO_M_S_E6055_F310_scaffold_2 16671 17129" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16877331..16878378 /note="source:INTACT160_F4_scaffold_7-int 12828 13836" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16878365..16878565 /note="source:scaffold_5_CACTA_0599 11246 11445" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(16878385..16879373) /note="source:CACAO_M_E43348_F5_scaffold_5 3691 4674" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16879374..16880857 /note="source:CACAO_M_S_E98441_F51_scaffold_8 1 1493" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16882287..16882921 /note="source:CACAO_M_E5326_F22_scaffold_2 22051 22673" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16882571..16882962) /note="source:CACAO_M_S_E101805_F5_scaffold_9 4687 5064" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16882941..16883440 /note="source:INTACT160_F4_scaffold_7-int 7653 8167" /mobile_element_type="retrotransposon:LTR/Copia" gene 16883335..16887601 /locus_tag="TCM_023639" /note="dbxref CacaoGD:Thecc1EG023639" mRNA join(16883335..16883352,16886403..16887601) /locus_tag="TCM_023639" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032862t1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.42 coverage" mobile_element 16883441..16886506 /note="source:CACAO_M_E42114_F51_scaffold_5 1 3066" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16886507..16892083 /note="source:INTACT160_F4_scaffold_7-int 8163 13833" /mobile_element_type="retrotransposon:LTR/Copia" CDS 16886841..16887542 /locus_tag="TCM_023639" /note="paralog of Thecc1EG032862t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08662.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLE9" /translation="MDRFLLESVRDAKAQEFETLVQAPRMIVSNYDIQFTQLSRYAPY LVQTERERIKRFIKGLHRPIYRILVSQRFTSYPEVVDAARKIEAGHTEVRVERERSKK NQGEGSSKYRDPSRGEDVNIAGQQGQRDGNLLRGSAFFSPPNQRKNFQFRSPPRSSDF SGVTYKWAMSNGITNSNPRQSGRWGSFCTFCGQIHTGPCNQMTVFCYECGGIGHVKSD CPTHRHNHEMARSSI" mobile_element 16892077..16892214 /note="source:INTACT160_F4_scaffold_7-int 6817 6954" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16892093..16893153) /note="source:CACAO_M_E43348_F5_scaffold_5 3689 4734" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16894036..16894181) /note="source:CACAO_M_E23991_F4_scaffold_4 4149 4295" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16897635..16898355) /note="source:scaffold_2_CACTA_0263 12328 13073" /mobile_element_type="transposon:TIR/CACTA" mobile_element 16898396..16899547 /note="source:INTACT415F_F22_scaffold_4-int 5041 6193" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16899533..16900460 /note="source:CACAO_M_S_E99244_F4_scaffold_9 9257 10189" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16900424..16900598) /note="source:CACAO_M_E43348_F5_scaffold_5 19539 19713" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16900654..16903246 /note="source:CACAO_M_S_E6651_F144_scaffold_2 2 2581" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16903247..16903657 /note="source:CACAO_M_E35511_F5_scaffold_5 3180 3582" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16904591..16905989) /note="source:INTACT65_F13_scaffold_1-int 11289 12685" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16905987..16908621 /note="source:CACAO_M_E52239_F256_scaffold_7 19813 22438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16908623..16909495) /note="source:INTACT65_F13_scaffold_1-int 10422 11295" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16909496..16917055 /note="source:INTACT545_F87_scaffold_5-int 1 7560" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16917056..16917562) /note="source:INTACT65_F13_scaffold_1-int 9907 10428" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16917584..16919211) /note="source:CACAO_M_E14113_F106_scaffold_3 4594 5608" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16920086..16923993) /note="source:CACAO_M_S_E124346_F13_scaffold_10 4 3951" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16926221..16930401) /note="source:INTACT622_F276_scaffold_7-int 3439 7628" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16930402..16933053 /note="source:CACAO_M_E42126_F345_scaffold_5 1 2652" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16933054..16936685) /note="source:CACAO_M_S_E32591_F276_scaffold_4 1 3635" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16939292..16944086) /note="source:CACAO_M_E14113_F106_scaffold_3 15984 20789" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16944096..16950458 /note="source:CACAO_M_E42130_F15_scaffold_5 1 6363" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16950459..16950805 /note="source:INTACT649F_F368_scaffold_5-int 8224 8572" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16950801..16952927 /note="source:CACAO_M_E50525_F33_scaffold_7 3535 5628" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16952941..16953487) /note="source:CACAO_M_E14113_F106_scaffold_3 14337 14883" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16953488..16953839) /note="source:CACAO_M_E51854_F82_scaffold_7 9895 10236" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16955595..16956211 /note="source:INTACT95_F143_scaffold_9-int 1466 2078" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16956213..16966508) /note="source:INTACT218_F33_scaffold_9-int 656 10958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16966509..16969795 /note="source:CACAO_M_E42134_F82_scaffold_5 1 3287" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16969796..16970486) /note="source:CACAO_M_E48381_F33_scaffold_6 1 684" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 16970487..16971377 /note="source:CACAO_M_E36294_F51_scaffold_5 12969 13861" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16971378..16973504) /note="source:INTACT622_F276_scaffold_7-int 1361 3475" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16973499..16974616) /note="source:CACAO_M_E14113_F106_scaffold_3 18982 20102" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 16974619..16976710 /note="source:CACAO_M_E14113_F106_scaffold_3 10690 12779" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(16979007..16987433) /note="source:INTACT759_F323_scaffold_6-int 1 8408" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(16983170..16986110) /locus_tag="TCM_023649" /note="dbxref CacaoGD:Thecc1EG023649" mRNA complement(join(16983170..16983721,16984521..16984584, 16985512..16986110)) /locus_tag="TCM_023649" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033564t1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.75 coverage" CDS complement(16983365..16983691) /locus_tag="TCM_023649" /note="paralog of Thecc1EG033564t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08663.1" /translation="MSRRGGSLDTSHSDSEGSLDSTARSKWHPDTGDSEGGLSRISDN RIPKSLSEWVHNKGSFKSSENFESESSSNTPKIEQDFLRNNLESTLENGRGKKLQGDI FILGRA" mobile_element complement(16989385..16992234) /note="source:CACAO_M_S_E119127_F246_scaffold_9 120 2966" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(16999241..17008047) /note="source:CACAO_M_E52239_F256_scaffold_7 10303 19099" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17008148..17009544) /note="source:CACAO_M_E53180_F15_scaffold_8 543 1938" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17009541..17009948 /note="source:CACAO_M_E4376_F15_scaffold_2 2464 2870" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17009949..17009977) /note="source:INTACT560_F15_scaffold_3-int 7919 7944" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17010754..17011116 /note="source:INTACT760_F85_scaffold_9-int 1 353" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17010828..17011642) /note="source:scaffold_4_CACTA_0494 3201 3955" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17012509..17012764 /note="source:scaffold_5_CACTA_0591 14084 14351" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17012754..17015411 /note="source:CACAO_M_E58324_F9_scaffold_9 7667 10221" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17015411..17015595) /note="source:CACAO_M_E58324_F9_scaffold_9 8853 9033" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17015596..17015706 /note="source:scaffold_5_CACTA_0591 3636 4004" /mobile_element_type="transposon:TIR/CACTA" gene complement(17018178..17024030) /locus_tag="TCM_023653" /note="dbxref CacaoGD:Thecc1EG023653" mRNA complement(join(17018178..17018810,17019297..17019469, 17019572..17020172,17020289..17020596,17023081..17024030)) /locus_tag="TCM_023653" /product="Six-hairpin glycosidases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01023102001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028111t1" /inference="similar to AA sequence:ricco:29929.m004502" /note="quality class is strong, express is medium, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1794t1" CDS complement(join(17018409..17018810,17019297..17019469, 17019572..17020172,17020289..17020596,17023081..17023456)) /locus_tag="TCM_023653" /note="dbxref ricco:29929.m004502; paralog of Thecc1EG028111t1" /codon_start=1 /product="Six-hairpin glycosidases superfamily protein" /protein_id="EOY08664.1" /db_xref="TAIR:AT1G65610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04478" /translation="MHARNHWGGSFDVNHGEEEKSWNTEWDRAALQSQQQDRSLDETQ QGWLLGPPQTKKKDKYVDLGCIVCSRKAFKWTLISILSAFIVIAVPIIIAKSLPKHTR RPPPPDNYTVALRKALLFFNAQKSGNLPKNNGISWRGNSGLNDGKEEMDLKGWLVGGY YDAGDNTKFHFPMAFSMTMLSWSLIEYSHKYQSIGEYDHIRDLIKWGTDYLLLTFNSS ATKIDKIYCQVGGSLNGSIATPDDHYCWMRPEDMDYKRPVQTAYAGPDLAGEMAAALA AASIVFRDNGAYSRKLIKGAQTVFAFARDGSKRRSYSRGNPYIQPYYNSSGYYDEYMW GAAWLYYATGNVSYISLATNPGLSKNSKALYDIPTNRALSWDNKLPAAMLLLTRYRIF LSPGYPYEDMLHMYHNVTALTMCSYLKEFHYFNWTQGGMIQLNLGKPNPLQYVANAAF LANLFADYLNATGVPGWNCNSRFFSSEYLRNFATSQVDYILGKNPMNMSYVVGYDKKF PRHVHHRGASIPHNNIKYSCTGGWKWRDSQNPNPNNITGAMVGGPDRFDHFRDVRTNS NYTEPTLAGNAGLIAALASLTRSGGHGIDKNTIFSAVPPLYPKSPPPAAPWRP" gene 17024129..17028199 /locus_tag="TCM_023654" /note="dbxref CacaoGD:Thecc1EG023654" mRNA join(17024129..17024344,17027501..17027656, 17027748..17028199) /locus_tag="TCM_023654" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS join(17027510..17027656,17027748..17027813) /locus_tag="TCM_023654" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08665.1" /translation="MIICCKMIFFYAAKMKTYLAKLLKKNLLLRIEFLAVRFSFERKH ANYKKTSYKPIDLRKPAMKNYYKIDQ" mobile_element 17030752..17033723 /note="source:CACAO_M_E42153_F143_scaffold_5 1 2972" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17034245..17037244 /note="source:CACAO_M_E42154_F288_scaffold_5 1 5037" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17037277..17037337 /note="source:INTACT189_F49_scaffold_5-int 17863 17920" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17038007..17042141 /note="source:scaffold_5_CACTA_0593 1 4135" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17043860..17043935) /note="source:CACAO_M_E58715_F13_scaffold_9 5988 6064" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17043972..17044104 /note="source:CACAO_M_E14347_F12_scaffold_3 8774 8835" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17046320..17046536) /note="source:CACAO_M_E42395_F3_scaffold_5 1553 1774" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17046529..17048011) /note="source:CACAO_M_E42395_F3_scaffold_5 19118 20593" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17052571..17055369) /note="source:CACAO_M_E54_F87_scaffold_1 1 2815" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17061322..17068285 /note="source:INTACT224_F176_scaffold_8-int 4831 11755" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17061971..17069185) /note="source:INTACT223_F175_scaffold_5-int 1029 8011" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17069594..17070629) /note="source:INTACT223_F175_scaffold_5-int 6208 7245" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17075947..17078779 /note="source:CACAO_M_E42162_F15_scaffold_5 1 2833" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17078780..17078812) /note="source:INTACT849F_F15_scaffold_5-int 7841 7870" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17079334..17080801 /note="source:INTACT167_F5_scaffold_2-int 3834 5305" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17080802..17082056) /note="source:INTACT167_F5_scaffold_2-int 4416 5691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17082028..17083754 /note="source:CACAO_M_S_E64023_F13_scaffold_5 5806 7532" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17083754..17086678) /note="source:INTACT95_F143_scaffold_9-int 1 2345" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17086680..17088150 /note="source:CACAO_M_S_E64023_F13_scaffold_5 7528 9009" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17089968..17093286 /note="source:CACAO_M_E42167_F82_scaffold_5 1 3319" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17091714..17093287) /note="source:scaffold_4_CACTA_0494 7499 9068" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17093528..17094234 /note="source:INTACT132_F12_scaffold_9-int 8902 9609" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17094336..17094651) /note="source:INTACT51F_F15_scaffold_1-int 10226 10542" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17094754..17096765 /note="source:CACAO_M_E11966_F15_scaffold_2 1069 3107" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17096888..17099448) /note="source:scaffold_4_CACTA_0494 1548 4038" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17099985..17100029) /note="source:CACAO_M_S_E121934_F7_scaffold_10 4696 4740" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17100019..17100069) /note="source:CACAO_Again_on_E14_scaffold_1 699 750" /mobile_element_type="transposon:TIR/hAT" gene 17100229..17101095 /locus_tag="TCM_023658" /note="dbxref CacaoGD:Thecc1EG023658" mRNA join(17100229..17100462,17100621..17101095) /locus_tag="TCM_023658" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003215t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(17100261..17100462,17100621..17100772) /locus_tag="TCM_023658" /note="paralog of Thecc1EG003215t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08666.1" /translation="MSRRDDSLDAPHNASEGSLDSTAKSQWRLDLGSSKSGQSRIPIT WIPLELEEMFRNKENLESSERHENATLVSREEYIRIQQAWKNRKHEDEEDHEEDPEED QSMCSDQGYNDPNGT" mobile_element complement(17104254..17105281) /note="source:scaffold_4_CACTA_0494 3027 4037" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17105269..17105617) /note="source:scaffold_4_CACTA_0494 10619 10954" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17107242..17107383 /note="source:INTACT33_F7_scaffold_5-int 11231 11373" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17107378..17111095) /note="source:INTACT547_F246_scaffold_8-int 4498 8257" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17111043..17111095) /note="source:INTACT551_F248_scaffold_7-int 11539 11590" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17111096..17115017 /note="source:CACAO_M_E52812_F7_scaffold_8 1 3950" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17115018..17117637 /note="source:CACAO_M_S_E64269_F231_scaffold_5 1 2620" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17117638..17123609 /note="source:INTACT363_F7_scaffold_9-int 3978 9921" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17123610..17124103) /note="source:INTACT547_F246_scaffold_8-int 3645 4139" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17124457..17124817 /note="source:CACAO_Again_on_E14_scaffold_1 687 1051" /mobile_element_type="transposon:TIR/hAT" mobile_element 17125943..17126127 /note="source:INTACT33_F7_scaffold_5-int 10869 11056" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17126484..17126625 /note="source:INTACT33_F7_scaffold_5-int 11231 11373" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17126618..17128080 /note="source:CACAO_M_S_E54060_F7_scaffold_5 1512 2999" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17128081..17129089) /note="source:scaffold_4_CACTA_0494 2001 3032" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17129117..17130001 /note="source:CACAO_M_S_E1983_F7_scaffold_1 2110 2994" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17130002..17131585) /note="source:CACAO_M_S_E119127_F246_scaffold_9 3649 5240" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17131579..17134046 /note="source:INTACT473_F7_scaffold_3-int 9338 11846" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17131891..17134876) /note="source:CACAO_M_S_E2791_F7_scaffold_1 4499 7484" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17134869..17135151) /note="source:scaffold_2_CACTA_0260 26 307" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17135442..17136512) /note="source:scaffold_2_CACTA_0261 2818 3886" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17137151..17137287 /note="source:CACAO_M_S_E64269_F231_scaffold_5 2485 2620" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17138729..17140554) /note="source:INTACT585_F12_scaffold_8-int 11423 13280" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17140553..17141007 /note="source:INTACT537_F22_scaffold_2-int 10356 10812" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17150649..17151116 /note="source:CACAO_M_S_E99574_F14_scaffold_9 21436 21887" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17151101..17154923) /note="source:INTACT264_F12_scaffold_6-int 4468 8293" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17154924..17157935 /note="source:CACAO_M_S_E64276_F7_scaffold_5 1 3012" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17157936..17158942) /note="source:INTACT264_F12_scaffold_6-int 3517 4523" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17159877..17159919 /note="source:CACAO_M_E65323_F12_scaffold_9 6683 6725" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17159906..17162699 /note="source:CACAO_M_E42179_F392_scaffold_5 1 2784" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17162665..17162724) /note="source:INTACT263_F12_scaffold_6-int 7131 7189" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17162700..17166156) /note="source:CACAO_M_S_E85957_F12_scaffold_7 19 3473" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17166407..17166632) /note="source:INTACT280_F60_scaffold_5-int 7446 7671" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17166861..17167436) /note="source:INTACT280_F60_scaffold_5-int 6584 7193" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17167675..17167820) /note="source:CACAO_M_S_E15173_F4_scaffold_2 8824 8969" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17168152..17168999) /note="source:CACAO_M_S_E15173_F4_scaffold_2 5017 5862" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17168983..17169487) /note="source:CACAO_M_S_E15173_F4_scaffold_2 1517 2027" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17169916..17172519) /note="source:CACAO_M_E3801_F60_scaffold_1 6567 9183" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17172521..17173225 /note="source:INTACT563_F255_scaffold_10-int 3 676" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17173920..17175602 /note="source:INTACT255_F60_scaffold_8-int 4610 6298" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17174967..17176267 /note="source:INTACT563_F255_scaffold_10-int 1834 3118" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17176186..17176282 /note="source:CACAO_M_E73087_F12_scaffold_10 10569 10675" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(17176246..17192930) /locus_tag="TCM_023662" /note="dbxref CacaoGD:Thecc1EG023662" mRNA complement(join(17176246..17176275,17186310..17188456, 17192857..17192930)) /locus_tag="TCM_023662" /product="Retrotransposon protein, Ty3-gypsy subclass, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400026518.20" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028107t1" /inference="similar to AA sequence:Phytozome:Glyma04g32860.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.13 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc7Loc1190t2_G2" mobile_element complement(17176266..17176958) /note="source:CACAO_M_E3801_F60_scaffold_1 5878 6572" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17176957..17182733) /note="source:INTACT280_F60_scaffold_5-int 1 5810" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17183014..17183078) /note="source:INTACT280_F60_scaffold_5-int 13872 13937" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17184107..17185416) /note="source:INTACT99F_F96_scaffold_2-int 8783 10095" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17185821..17188455) /note="source:CACAO_M_E45504_F98_scaffold_6 6295 8929" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(17186888..17188453) /locus_tag="TCM_023662" /note="paralog of Thecc1EG028107t1" /codon_start=1 /product="Retrotransposon protein, Ty3-gypsy subclass, putative" /protein_id="EOY08667.1" /db_xref="Phytozome:Glyma04g32860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2QTG7" /translation="MGSLAHISIGRRSLVREIHSLGDIGVRLEVAETNALLAHFRVRP ILMDKIKEAQSKNEFVIKALEDPQGRKGKMFTKGTDGVLRYGTRLYVPDGDGLRREIL EEAHMAAYVVHPGATKMYQDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLL QPLPVPEWKWEHIAMDFVTGLPRTSGGYDSIWIVVDRLTKSAHFLPVKTTYGAAQYAR VYVDEIVRLHGIPISIVSDRGAQFTSRFWGKLQEALGTKLDFSTAFHPQTDGQSERTI QTLEDMLRACVIDLGVRWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCRSPIGWLE VGERKLLGPELVQDATEKIHMIRQRMLTAQSRHKSYADNRRRDLEFQVGDHVFLKVSP TKGVMRFGKKGKLSPRYIGPFEILDKVGTVAYRLALPPDLSNIHPVFHVSMLRKYNPD PSHVIRYETIQLQDDLTYEEQPVAILDRQVKKLRSKDVASVKVLWRNHTSEEVTWEAE DEMRTKHPHLFDM" mobile_element complement(17188565..17190528) /note="source:CACAO_M_E45504_F98_scaffold_6 2992 4955" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(17193852..17204779) /locus_tag="TCM_023663" /note="dbxref CacaoGD:Thecc1EG023663" mRNA complement(join(17193852..17194676,17194806..17195066, 17204645..17204779)) /locus_tag="TCM_023663" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.15 coverage" mobile_element 17194043..17194142 /note="source:INTACT640_F60_scaffold_2-int 6934 7032" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(17194504..17194676,17194806..17194920)) /locus_tag="TCM_023663" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08668.1" /translation="MRPNPYLSIMDEFLEAMKICGKRIVRNKEKELTGALKEGSGKSG FWIEFGSPLCVANGCIAQEFFLKVFASISFGRFPKESLKLDGLPNVMALYP" mobile_element 17195655..17195785 /note="source:INTACT39F_F22_scaffold_1-int 5564 5685" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17197993..17199004) /note="source:CACAO_M_E9571_F13_scaffold_2 8491 9471" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17200172..17202760) /note="source:CACAO_M_E33213_F12_scaffold_4 8113 10704" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17203998..17204160 /note="source:CACAO_M_E14312_F12_scaffold_3 11044 11205" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17204232..17204344 /note="source:CACAO_M_E14312_F12_scaffold_3 11190 11302" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17204900..17204996 /note="source:INTACT640_F60_scaffold_2-int 6934 7032" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17205609..17207677) /note="source:CACAO_M_E84179_F14_scaffold_10 7587 9660" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17207676..17208345) /note="source:CACAO_M_E84179_F14_scaffold_10 6998 7666" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17213743..17223081) /note="source:INTACT594_F265_scaffold_8-int 1 6201" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17223950..17224004) /note="source:CACAO_M_E47740_F12_scaffold_6 5627 5681" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 17225225..17234836 /locus_tag="TCM_023665" /note="dbxref CacaoGD:Thecc1EG023665" mRNA join(17225225..17225247,17230513..17230991, 17231869..17232040,17232146..17232247,17233853..17234836) /locus_tag="TCM_023665" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.25 coverage" mobile_element 17225303..17225623 /note="source:scaffold_2_CACTA_0260 26 345" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17227838..17230616 /note="source:CACAO_M_E42190_F87_scaffold_5 1 2779" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(17231911..17232040,17232146..17232247, 17233853..17234001) /locus_tag="TCM_023665" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08669.1" /translation="MTDATERNLLDTKINPLLNDLYHTLRWPIYLHIVYKWVSTRLLR CVIILKVSNIEHMVILNVTNIITQHEAYFQSQSDTLLNVSIENLLEAFIVHPSKNVSI HKGMYRYIFSCKQFSAFQTPKIQA" gene 17237968..17251732 /locus_tag="TCM_023669" /note="dbxref CacaoGD:Thecc1EG023669" mRNA join(17237968..17238552,17244582..17244817, 17247136..17247375,17250114..17250188,17250788..17250821, 17251548..17251732) /locus_tag="TCM_023669" /product="Uncharacterized protein" /note="quality class is medium-expresste, express is medium, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.44 coverage" mobile_element 17241761..17244398 /note="source:CACAO_M_S_E64293_F231_scaffold_5 1 2638" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(17244611..17244817,17247136..17247375, 17250114..17250188,17250788..17250821,17251548..17251696) /locus_tag="TCM_023669" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08670.1" /translation="MLPKDVQKPLEKAIRDEAHKSLDYALKTILRCAESTAKFWKAMK GLGMANTALSRLVITRVEIDMHHIKGLTREMMKLPLIRDIASTSIYESIKVKVSQEYY KKYEKTLNNVIHSETSVYYITFLLHIFKILIRSFMLGEDSGNFIREHVVKLSIRVKRL YPKSAIRSTSILDIPWRTLLDTSDQVIIAHKRGAKTDIKPYEISVGISGNECLWDIAV IVTDSKRVPDRDTDKL" mobile_element 17244825..17245791 /note="source:CACAO_M_E85544_F144_scaffold_11 1 1040" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17245790..17247224 /note="source:CACAO_M_S_E145246_F144_scaffold_10 1208 2584" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17248669..17251682 /note="source:CACAO_M_E10340_F324_scaffold_2 1 3019" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 17251357..17278709 /locus_tag="TCM_023670" /note="dbxref CacaoGD:Thecc1EG023670" mRNA join(17251357..17251616,17251883..17252477, 17253133..17253193,17253292..17253394,17253554..17253656, 17256164..17256217,17256292..17256354,17257313..17257362, 17257477..17257552,17260232..17260444,17263666..17263753, 17264602..17264687,17264766..17264873,17266599..17266643, 17266767..17266855,17268529..17268572,17278231..17278709) /locus_tag="TCM_023670" /product="Zinc induced facilitator-like 1 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s02500.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044056t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s02500.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:PASA:2:TSA:puevd3b022894t1a2; inference alignment:Newbler:10:TSA:cgbaB_g05382t00001" mRNA join(17251357..17251616,17251883..17252477, 17252559..17252599,17253133..17253193,17253292..17253394, 17253554..17253656,17256164..17256217,17256292..17256354, 17257313..17257362,17257477..17257552,17260232..17260444, 17263666..17263753,17264602..17264687,17264766..17264873, 17266599..17266643,17266767..17266855,17268529..17268572, 17278231..17278698) /locus_tag="TCM_023670" /product="Zinc induced facilitator-like 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s02500.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044056t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s02500.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05382t00001" mRNA join(17252013..17252477,17252559..17252599, 17253133..17253193,17253292..17253394,17253554..17253656, 17256164..17256217,17256292..17256354,17257313..17257362, 17257477..17257552,17260232..17260444,17263666..17263738, 17278230..17278520) /locus_tag="TCM_023670" /product="Zinc induced facilitator-like 1 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s02500.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044056t3" /inference="similar to AA sequence:Phytozome:POPTR_0016s02500.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc68t16; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc68t17; inference alignment:Newbler:10:TSA:cgbaB_g05382t00001" mRNA join(17252013..17252477,17252559..17252599, 17253133..17253193,17253292..17253394,17253554..17253656, 17256164..17256217,17256292..17256354,17257313..17257362, 17257477..17257552,17260232..17260444,17263666..17263753, 17264602..17264687,17264766..17264873,17266599..17266643, 17266767..17266855,17268529..17268566,17272779..17272785, 17278231..17278252) /locus_tag="TCM_023670" /product="Zinc induced facilitator-like 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s02500.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044056t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s02500.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc68t17; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc68t17; inference alignment:Newbler:10:TSA:cgbaB_g05382t00001" CDS join(17252330..17252477,17252559..17252599, 17253133..17253193,17253292..17253394,17253554..17253656, 17256164..17256217,17256292..17256354,17257313..17257362, 17257477..17257552,17260232..17260444,17263666..17263753, 17264602..17264687,17264766..17264873,17266599..17266643, 17266767..17266855,17268529..17268572,17278231..17278331) /locus_tag="TCM_023670" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG044056t1" /codon_start=1 /product="Zinc induced facilitator-like 1 isoform 1" /protein_id="EOY08671.1" /db_xref="Phytozome:POPTR_0016s02500.1" /db_xref="TAIR:AT5G13750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HK81" /translation="MGDNREALLGAENKYFENCPGCKVELLKETNPGIPFKHLLYVWV VVLAAALPISSLFPFLYFMIRDFNIAKKEEDIGYYAGYVGSAFMFGRALTSVFWGMIA DRYGRKPVIMFGTFSVVIFNTLFGLSTNFWVAVSTRFLLGSLCGILGPMRAYASEVCR KEYQALGMSIISTSWGIGLVIGPALGGFLAQPAEKFPYIFANESLFGRFPYFLPCILI SLFAFGVFLISCSLPETLHIHERTDKECDKLNDALVTSTGEPNANEKVRIVGRHPTSQ QNLWKNWPLMSSIIVYCVFQLHDMAYAEIFSLWAVSPRKNGGLSYSTADVGEVLAISG CGLLLFQLFLYPLIERTLGPVMISRLGAVLTIPLLFTYPFIAMLKGLSLMFLISSASV LKNVLSVSITTGLFLLQNRAVTQKQRGAANGISMSAMSIFKAVGPAAGGSLFSWAQNR QNAFFLPGDQMVFFALNMIEVIGLLMTFKPFLIPPDDNVL" CDS join(17252330..17252477,17252559..17252599, 17253133..17253193,17253292..17253394,17253554..17253656, 17256164..17256217,17256292..17256354,17257313..17257362, 17257477..17257552,17260232..17260444,17263666..17263753, 17264602..17264687,17264766..17264873,17266599..17266643, 17266767..17266855,17268529..17268566,17272779..17272785, 17278231..17278234) /locus_tag="TCM_023670" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG044056t1" /codon_start=1 /product="Zinc induced facilitator-like 1 isoform 2" /protein_id="EOY08672.1" /db_xref="Phytozome:POPTR_0016s02500.1" /db_xref="TAIR:AT5G13750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HK81" /translation="MGDNREALLGAENKYFENCPGCKVELLKETNPGIPFKHLLYVWV VVLAAALPISSLFPFLYFMIRDFNIAKKEEDIGYYAGYVGSAFMFGRALTSVFWGMIA DRYGRKPVIMFGTFSVVIFNTLFGLSTNFWVAVSTRFLLGSLCGILGPMRAYASEVCR KEYQALGMSIISTSWGIGLVIGPALGGFLAQPAEKFPYIFANESLFGRFPYFLPCILI SLFAFGVFLISCSLPETLHIHERTDKECDKLNDALVTSTGEPNANEKVRIVGRHPTSQ QNLWKNWPLMSSIIVYCVFQLHDMAYAEIFSLWAVSPRKNGGLSYSTADVGEVLAISG CGLLLFQLFLYPLIERTLGPVMISRLGAVLTIPLLFTYPFIAMLKGLSLMFLISSASV LKNVLSVSITTGLFLLQNRAVTQKQRGAANGISMSAMSIFKAVGPAAGGSLFSWAQNR QNAFFPTK" CDS join(17252330..17252477,17252559..17252599, 17253133..17253193,17253292..17253394,17253554..17253656, 17256164..17256217,17256292..17256354,17257313..17257362, 17257477..17257552,17260232..17260444,17263666..17263738, 17278230..17278234) /locus_tag="TCM_023670" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG044056t3" /codon_start=1 /product="Zinc induced facilitator-like 1 isoform 4" /protein_id="EOY08674.1" /db_xref="Phytozome:POPTR_0016s02500.1" /db_xref="TAIR:AT5G13750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HK81" /translation="MGDNREALLGAENKYFENCPGCKVELLKETNPGIPFKHLLYVWV VVLAAALPISSLFPFLYFMIRDFNIAKKEEDIGYYAGYVGSAFMFGRALTSVFWGMIA DRYGRKPVIMFGTFSVVIFNTLFGLSTNFWVAVSTRFLLGSLCGILGPMRAYASEVCR KEYQALGMSIISTSWGIGLVIGPALGGFLAQPAEKFPYIFANESLFGRFPYFLPCILI SLFAFGVFLISCSLPETLHIHERTDKECDKLNDALVTSTGEPNANEKVRIVGRHPTSQ QNLWKNWPLMSSIIVYCVFQLHDMAYAEIFSLWAVSPRKNGGLSYSTADVGEG" CDS join(17252451..17252477,17253133..17253193, 17253292..17253394,17253554..17253656,17256164..17256217, 17256292..17256354,17257313..17257362,17257477..17257552, 17260232..17260444,17263666..17263753,17264602..17264687, 17264766..17264873,17266599..17266643,17266767..17266855, 17268529..17268572,17278231..17278331) /locus_tag="TCM_023670" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG044056t1" /codon_start=1 /product="Zinc induced facilitator-like 1 isoform 3" /protein_id="EOY08673.1" /db_xref="Phytozome:POPTR_0016s02500.1" /db_xref="TAIR:AT5G13750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HIX4" /translation="MSGSLFLLPIRDFNIAKKEEDIGYYAGYVGSAFMFGRALTSVFW GMIADRYGRKPVIMFGTFSVVIFNTLFGLSTNFWVAVSTRFLLGSLCGILGPMRAYAS EVCRKEYQALGMSIISTSWGIGLVIGPALGGFLAQPAEKFPYIFANESLFGRFPYFLP CILISLFAFGVFLISCSLPETLHIHERTDKECDKLNDALVTSTGEPNANEKVRIVGRH PTSQQNLWKNWPLMSSIIVYCVFQLHDMAYAEIFSLWAVSPRKNGGLSYSTADVGEVL AISGCGLLLFQLFLYPLIERTLGPVMISRLGAVLTIPLLFTYPFIAMLKGLSLMFLIS SASVLKNVLSVSITTGLFLLQNRAVTQKQRGAANGISMSAMSIFKAVGPAAGGSLFSW AQNRQNAFFLPGDQMVFFALNMIEVIGLLMTFKPFLIPPDDNVL" gene complement(17258459..17262573) /locus_tag="TCM_023671" /note="dbxref CacaoGD:Thecc1EG023671" mRNA complement(join(17258459..17258957,17259592..17259797, 17262416..17262573)) /locus_tag="TCM_023671" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.36 coverage" CDS complement(join(17258672..17258957,17259592..17259632)) /locus_tag="TCM_023671" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08675.1" /translation="MVMSNEGAKKGRKRSFHLQKCFRRPRERGRRKEQGKTIGILSVR KGRRPREEAVESIKEEGKERKEERSSGHTQSGEGEKGIMWPQSLAMKGKERETEVSVE ARKRLS" mobile_element 17271068..17271712 /note="source:scaffold_6_CACTA_0702 3112 3767" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17272652..17273003) /note="source:INTACT570_F260_scaffold_5-int 3832 4200" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17273077..17273425) /note="source:INTACT570_F260_scaffold_5-int 3481 3834" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17273418..17275219) /note="source:scaffold_6_CACTA_0702 4639 6484" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17276182..17276831) /note="source:scaffold_6_CACTA_0702 3112 3766" /mobile_element_type="transposon:TIR/CACTA" gene 17279562..17283291 /locus_tag="TCM_023672" /note="dbxref CacaoGD:Thecc1EG023672" mRNA join(17279562..17280067,17281996..17283291) /locus_tag="TCM_023672" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008921t1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.18 coverage" mobile_element complement(17281264..17281555) /note="source:scaffold_6_CACTA_0702 3 176" /mobile_element_type="transposon:TIR/CACTA" CDS 17282043..17282378 /locus_tag="TCM_023672" /note="paralog of Thecc1EG008921t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08676.1" /translation="MASQKSIVTEGQSIYRHSLLDGSNYAYWSTRKSIYIRALDYEMW DVIKEGPYIPTSPSIITREKISKPKVKWIRAEMKKVQINFKVINIFHCAFTHIKFNKV LDCTTTKKI" mobile_element complement(17286456..17286642) /note="source:scaffold_6_CACTA_0702 3 176" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17287180..17290133 /note="source:CACAO_M_E42198_F44_scaffold_5 1 2954" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17290444..17293133 /note="source:INTACT475_F17_scaffold_8-int 1 2633" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17293116..17293357 /note="source:INTACT475_F17_scaffold_8-int 2832 3085" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17293358..17293781) /note="source:CACAO_M_E85923_F17_scaffold_12 6567 7023" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17302968..17303285) /note="source:INTACT537_F22_scaffold_2-int 10357 10675" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17303285..17305820 /note="source:CACAO_M_E4753_F17_scaffold_2 11902 14452" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17308944..17309099) /note="source:INTACT1334F_F383_scaffold_8-int 3462 3606" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17313154..17313747 /note="source:INTACT1334F_F383_scaffold_8-int 2929 3503" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17313734..17317036) /note="source:INTACT570_F260_scaffold_5-int 8577 11865" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17317037..17319700 /note="source:INTACT1334F_F383_scaffold_8-int 3487 6171" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17320096..17323114 /note="source:CACAO_M_S_E64308_F143_scaffold_5 1 3007" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17328275..17328564) /note="source:CACAO_M_E1841_F5_scaffold_1 3592 3878" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17328565..17331494 /note="source:CACAO_M_E9677_F7_scaffold_2 6465 9414" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17331497..17331935 /note="source:CACAO_M_E33213_F12_scaffold_4 10270 10702" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17331957..17332110 /note="source:INTACT200_F51_scaffold_4-int 3214 3364" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17332104..17339307) /note="source:CACAO_M_E50108_F4_scaffold_7 6782 13956" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17340385..17342675 /note="source:INTACT280_F60_scaffold_5-int 9241 10498" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17342657..17343525 /note="source:CACAO_M_E1841_F5_scaffold_1 15775 16661" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17344087..17344524) /note="source:INTACT280_F60_scaffold_5-int 13870 14307" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17345582..17345944 /note="source:INTACT135F_F90_scaffold_2-int 5574 5939" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17345644..17346690 /note="source:CACAO_M_E3621_F7_scaffold_1 345 1179" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17347509..17348484) /note="source:INTACT510_F235_scaffold_5-int 13 1003" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17348480..17349156 /note="source:INTACT95_F143_scaffold_9-int 3018 3680" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17349150..17349195) /note="source:CACAO_M_S_E5046_F335_scaffold_1 19856 19901" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17349167..17349584) /note="source:CACAO_M_E58819_F24_scaffold_9 15231 15651" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17350715..17352248 /note="source:INTACT363_F7_scaffold_9-int 3213 4769" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 17351154..17361433 /locus_tag="TCM_023679" /note="dbxref CacaoGD:Thecc1EG023679" mRNA join(17351154..17351170,17359721..17359885, 17360689..17360889,17361176..17361433) /locus_tag="TCM_023679" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" mobile_element 17353338..17354462 /note="source:CACAO_M_E5899_F5_scaffold_2 9336 10501" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17355478..17355914) /note="source:INTACT280_F60_scaffold_5-int 13870 14307" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17356393..17359375) /note="source:CACAO_M_S_E16290_F7_scaffold_2 1 2987" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17359407..17359845) /note="source:CACAO_M_E5899_F5_scaffold_2 20503 20961" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(17359750..17359885,17360689..17360822) /locus_tag="TCM_023679" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08677.1" /translation="MMWGDAHELGEIGCPAMCTMWGDAHELVEMRCPTMCTMWGDAHQ LVMTRISGRDNKDENTSTLKGMKPTGRVKKDKDNDKCHFYDKLGH" mobile_element complement(17362812..17365241) /note="source:CACAO_M_S_E109853_F60_scaffold_9 14930 17048" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17365382..17368385 /note="source:CACAO_M_E42225_F201_scaffold_5 1 3004" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17368386..17371152) /note="source:CACAO_M_S_E109853_F60_scaffold_9 8936 11701" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17371148..17371244) /note="source:CACAO_M_S_E109853_F60_scaffold_9 11836 11931" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17372950..17373029) /note="source:CACAO_M_E1841_F5_scaffold_1 22974 23050" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17374014..17374636 /note="source:INTACT280_F60_scaffold_5-int 9228 9684" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17375376..17375813 /note="source:INTACT280_F60_scaffold_5-int 13870 14307" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17376570..17376988 /note="source:CACAO_M_E47740_F12_scaffold_6 4104 4519" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17376997..17377313) /note="source:CACAO_M_S_E85957_F12_scaffold_7 13654 13969" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17377314..17379622 /note="source:CACAO_M_S_E50960_F369_scaffold_4 12788 15024" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17379642..17381561 /note="source:CACAO_M_S_E5046_F335_scaffold_1 434 2434" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17382659..17382692) /note="source:INTACT224_F176_scaffold_8-int 13876 13910" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17382959..17384374) /note="source:CACAO_M_S_E7818_F60_scaffold_2 5773 7117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17384449..17385232) /note="source:CACAO_M_S_E7818_F60_scaffold_2 5125 5903" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17386264..17387560 /note="source:CACAO_M_S_E83372_F14_scaffold_6 3038 4323" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17387558..17388228 /note="source:scaffold_2_CACTA_0263 1999 2671" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17387731..17388510 /note="source:CACAO_M_E24592_F195_scaffold_4 1569 2359" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17388321..17393271) /note="source:INTACT1421F_F389_scaffold_9-int 4498 9394" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17393292..17394151) /note="source:CACAO_M_E5326_F22_scaffold_2 21805 22673" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17395020..17395497) /note="source:INTACT595_F266_scaffold_7-int 1065 1539" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17396313..17399433 /note="source:INTACT224_F176_scaffold_8-int 9517 13493" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17399537..17400471) /note="source:scaffold_2_CACTA_0263 18 970" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17401393..17404079 /note="source:CACAO_M_S_E52921_F60_scaffold_5 1291 3942" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17404073..17406682 /note="source:scaffold_2_CACTA_0263 1999 4629" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17406635..17406694 /note="source:CACAO_M_E35511_F5_scaffold_5 4479 4533" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17406681..17406972 /note="source:CACAO_M_S_E52921_F60_scaffold_5 3933 4224" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17406972..17409992) /note="source:INTACT39F_F22_scaffold_1-int 5505 7602" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17409993..17411434 /note="source:CACAO_M_E33870_F15_scaffold_4 1 1440" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17411434..17411650) /note="source:CACAO_M_E101_F15_scaffold_1 1188 1404" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17413668..17414716 /note="source:INTACT1441F_F99_scaffold_9-int 797 1845" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17421165..17421498) /note="source:INTACT39F_F22_scaffold_1-int 5131 5482" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17421536..17427990) /note="source:INTACT37_F117_scaffold_2-int 1723 7434" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17428012..17430437) /note="source:INTACT37_F117_scaffold_2-int 1 3161" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17430438..17431254 /note="source:CACAO_M_S_E52921_F60_scaffold_5 4230 5046" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17431250..17431302) /note="source:CACAO_M_S_E7818_F60_scaffold_2 20954 21006" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17431552..17433302 /note="source:CACAO_M_E58324_F9_scaffold_9 18480 20230" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17433403..17434728 /note="source:INTACT584_F15_scaffold_3-int 9963 11289" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17434588..17434745) /note="source:INTACT407F_F356_scaffold_4-int 5162 5315" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17434746..17434767) /note="source:INTACT302_F7_scaffold_7-int 3309 3480" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17434781..17435300) /note="source:CACAO_M_S_E7818_F60_scaffold_2 6594 7115" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17435440..17435827) /note="source:CACAO_M_S_E7818_F60_scaffold_2 6226 6604" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17435991..17436195) /note="source:CACAO_M_S_E7818_F60_scaffold_2 19452 19644" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17435994..17436252 /note="source:CACAO_M_E53215_F369_scaffold_8 1174 1385" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17436442..17437239) /note="source:CACAO_M_S_E7818_F60_scaffold_2 5118 5915" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17437093..17437257 /note="source:CACAO_M_E5326_F22_scaffold_2 17763 17917" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17437235..17437490 /note="source:CACAO_M_S_E52921_F60_scaffold_5 5041 5296" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17437469..17437576) /note="source:CACAO_M_E70891_F369_scaffold_10 12315 12423" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17437483..17438991 /note="source:CACAO_M_S_E15347_F33_scaffold_2 5807 7328" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(17437798..17448772) /locus_tag="TCM_023686" /note="dbxref CacaoGD:Thecc1EG023686" mRNA complement(join(17437798..17437825,17438583..17438708, 17440676..17442583,17446261..17446272,17448661..17448772)) /locus_tag="TCM_023686" /product="DNA/RNA polymerases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400044090.24" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003425t1" /inference="similar to AA sequence:Phytozome:Glyma18g33480.1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.73 coverage" CDS complement(join(17438619..17438708,17440676..17442583, 17446261..17446263)) /locus_tag="TCM_023686" /note="paralog of Thecc1EG003425t1" /codon_start=1 /product="DNA/RNA polymerases superfamily protein" /protein_id="EOY08678.1" /db_xref="Phytozome:Glyma18g33480.1" /db_xref="TAIR:ATMG00860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2QNF0" /translation="MSREEHEQHLKIVLQILREHRLYAKFSKCEFWLESVAFLGHVVS KEGIRVDTKKIEAVEKWPRPTSVTEIRSFVGLAGYYRRFVKDFSKIVAPLTKLTRKDT KFEWSDACENSFEKLKACLTTAPVLSLPQGTGGYTVFCDASGVGLGCVLMQHGKVIAY ASRQLKRHEQNYPIHNLEMAAIVFALKIWRHYLYGETCEIYTDHKSLKYIFQQRDLNL RQRRWMELLKDYDCTILYHPGKANVVADALSRKSMGSLAHISIGRRSLVREIHSLGDI GVRLEVAETNALLAHFRVRPILMDKIKEAQSKDEFVIKALEDPQGRKGKMFTKGTDGV LRYGTRLYVPDGDGLRRKILEEAHMAAYVVHPGATKMYQDLKEVYWWEGLKRDVAEFV SKCLVCQQVKAEHQKPAGLLQPLPVPEWKWEHIAMDFVTGLPRTSGGYDSIWIVVDRL TKSAHFLSVKTTYGAAQYARVYVDEIVRLHGIPISIVSDRGAQFTSRFWGKLQEALGT KLDFSTTFHPQTDGQSERTIQTLEDMLRACVIDLGVKWEQYLPLVEFAYNNSFQTSIQ MAPFEALYGRRCRSPIGWLEVGERKLLGPELVQDATEKIHMIRQKMLTAQSRQKSYAD NRRRDLEFQVGDHGQYSKFLNFVICQGGETFGKGKGIAPEDY" mobile_element complement(17439490..17440559) /note="source:CACAO_M_E45504_F98_scaffold_6 4048 5117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17440660..17442593) /note="source:CACAO_M_E5569_F322_scaffold_2 4771 6704" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17442696..17442970) /note="source:INTACT99F_F96_scaffold_2-int 3497 3771" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17443071..17444086) /note="source:INTACT99F_F96_scaffold_2-int 2556 3572" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17444660..17445365) /note="source:INTACT99F_F96_scaffold_2-int 8637 9340" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17445911..17446629) /note="source:INTACT99F_F96_scaffold_2-int 1 720" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17446630..17446734 /note="source:CACAO_M_S_E7818_F60_scaffold_2 21190 21294" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17446734..17447682) /note="source:INTACT669_F295_scaffold_3-int 8516 9444" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17447683..17450476 /note="source:CACAO_M_S_E64371_F15_scaffold_5 1 2755" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17450544..17452420 /note="source:INTACT1373F_F385_scaffold_8-int 10948 12829" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17452418..17455736 /note="source:CACAO_M_E43672_F60_scaffold_5 16348 19679" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17457316..17463603) /note="source:INTACT595_F266_scaffold_7-int 1855 8158" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17465343..17465442 /note="source:CACAO_M_S_E7818_F60_scaffold_2 18501 18621" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17465767..17465900 /note="source:CACAO_M_E35511_F5_scaffold_5 8741 8876" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17468229..17469328) /note="source:CACAO_M_S_E7818_F60_scaffold_2 5974 7120" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17473784..17474378) /note="source:CACAO_M_E65050_F7_scaffold_9 1612 2198" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17474724..17474854 /note="source:scaffold_5_CACTA_0591 6352 6474" /mobile_element_type="transposon:TIR/CACTA" gene complement(17475097..17476321) /locus_tag="TCM_023690" /note="dbxref CacaoGD:Thecc1EG023690" mRNA complement(join(17475097..17475580,17475777..17475945, 17476225..17476321)) /locus_tag="TCM_023690" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012392t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc3579t1" CDS complement(join(17475314..17475580,17475777..17475945, 17476225..17476244)) /locus_tag="TCM_023690" /note="paralog of Thecc1EG012392t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08679.1" /translation="MKLRNYMKGKEKQRIKERKIVGEEEKRNKTSGLFLTRFCCTLRE EKRAFSCNCWRKKKLKNFEKNWSCLLVVCVGKLDSFVLPILRSFVAGNLSWKSANFRA KNGNKKGEKMRLLVTDFEKKGSEEAMVVKRGSHGGEGSDGLERKKKEKT" mobile_element complement(17481269..17482049) /note="source:CACAO_M_S_E7818_F60_scaffold_2 5125 5882" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17481978..17482059 /note="source:INTACT1372F_F96_scaffold_8-int 2644 2724" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17482688..17484401 /note="source:CACAO_M_E35511_F5_scaffold_5 8855 10596" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17484792..17488923 /note="source:CACAO_M_S_E99035_F335_scaffold_9 1 4229" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17489363..17489394 /note="source:scaffold_4_CACTA_0493 5547 5578" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17489395..17499725 /note="source:INTACT183_F15_scaffold_5-int 1 10331" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17499572..17499746) /note="source:CACAO_M_E9395_F12_scaffold_2 2050 2221" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17499726..17502247) /note="source:CACAO_M_E10551_F245_scaffold_2 1 2524" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17502248..17505461 /note="source:scaffold_2_CACTA_0259 2347 5557" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17505461..17507428) /note="source:CACAO_M_E14312_F12_scaffold_3 5297 7300" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17507413..17509103 /note="source:CACAO_M_S_E18399_F231_scaffold_3 7861 9636" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17509032..17509117) /note="source:INTACT1218F_F372_scaffold_6-int 7904 8002" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17510263..17510318) /note="source:CACAO_M_E59539_F98_scaffold_9 2034 2089" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17510379..17510815) /note="source:INTACT167_F5_scaffold_2-int 5256 5691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17510809..17511362) /note="source:INTACT1218F_F372_scaffold_6-int 8107 8665" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17511756..17512783) /note="source:INTACT136_F150_scaffold_10-int 2060 3084" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17512784..17521800) /note="source:INTACT1218F_F372_scaffold_6-int 1 8341" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17521800..17524625 /note="source:CACAO_M_E42283_F15_scaffold_5 1 2826" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17524627..17524745) /note="source:CACAO_M_E72867_F9_scaffold_10 6784 6903" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17525190..17525340 /note="source:INTACT39F_F22_scaffold_1-int 5151 5329" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17525387..17526817) /note="source:CACAO_M_E5899_F5_scaffold_2 19644 21086" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(17527132..17541221) /locus_tag="TCM_023698" /note="dbxref CacaoGD:Thecc1EG023698" mRNA complement(join(17527132..17527528,17531331..17531850, 17532134..17532477,17541198..17541221)) /locus_tag="TCM_023698" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS complement(17527199..17527489) /locus_tag="TCM_023698" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08680.1" /translation="MRFSPLFLNPSLLYSSAFLVTHRCGTIPHPGGKCRIADTFLGRI SPLAIAFLIHSLCHFSYCFKRKFLTVFGVSELSLLSRLLLISKLFFITKPFC" mobile_element complement(17527361..17527774) /note="source:INTACT597_F267_scaffold_2-int 12095 12516" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17527766..17528259 /note="source:CACAO_M_E65050_F7_scaffold_9 4419 4912" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17528263..17529351) /note="source:INTACT597_F267_scaffold_2-int 9762 10685" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17529340..17530823 /note="source:INTACT701_F305_scaffold_10-int 3364 4871" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17530817..17530959) /note="source:INTACT39F_F22_scaffold_1-int 5451 5593" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17532453..17532510) /note="source:CACAO_M_E58819_F24_scaffold_9 14057 14117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17532463..17532516 /note="source:CACAO_M_S_E83391_F15_scaffold_6 7985 8032" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17532511..17535387 /note="source:CACAO_M_S_E8191_F15_scaffold_2 96 2969" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17535244..17535403) /note="source:CACAO_M_S_E50960_F369_scaffold_4 6920 7084" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17535627..17535980) /note="source:INTACT642F_F365_scaffold_5-int 5914 6271" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17539412..17539505 /note="source:CACAO_M_E43590_F7_scaffold_5 9756 9846" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17539428..17540119) /note="source:INTACT597_F267_scaffold_2-int 8137 8810" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17541208..17542630) /note="source:CACAO_M_E5899_F5_scaffold_2 19652 21086" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17542631..17543381 /note="source:CACAO_M_E35511_F5_scaffold_5 9169 9919" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17543585..17543603) /note="source:INTACT135_F42_scaffold_4-int 6335 6357" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17543604..17546576 /note="source:CACAO_M_E42289_F15_scaffold_5 1 2973" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17546792..17546802) /note="source:scaffold_9_CACTA_0931 3099 3149" /mobile_element_type="transposon:TIR/CACTA" mobile_element 17546803..17546883 /note="source:CACAO_M_E5899_F5_scaffold_2 25576 25655" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17547417..17547493 /note="source:INTACT85_F9_scaffold_4-int 12216 12293" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(17552989..17563976) /locus_tag="TCM_023699" /note="dbxref CacaoGD:Thecc1EG023699" mRNA complement(join(17552989..17553461,17553650..17554239, 17559889..17560122,17561708..17562016,17562625..17562813, 17563498..17563976)) /locus_tag="TCM_023699" /product="DHHC-type zinc finger family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g30360.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023575t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s02580.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b022922t1a2; alternateUTRof:Thecc1EG023699t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4468t1" mRNA complement(join(17552989..17553464,17553650..17554239, 17559889..17560122,17561708..17562016,17562625..17562813, 17563498..17563976)) /locus_tag="TCM_023699" /product="DHHC-type zinc finger family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g30360.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023575t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s02580.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4468t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4468t1" CDS complement(join(17553667..17554239,17559889..17560122, 17561708..17562016,17562625..17562813,17563498..17563557)) /locus_tag="TCM_023699" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG023575t1" /codon_start=1 /product="DHHC-type zinc finger family protein, putative isoform 1" /protein_id="EOY08681.1" /db_xref="Phytozome:POPTR_0016s02580.2" /db_xref="TAIR:AT3G56930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M1K5" /translation="MALYSDHKPKRLYRVWKGSNRFFCGGRLIFGPDVASLFLSTLLI AGPAIAFCIRMYIKIRDENTKHVDRCYPILVVGAILSALDLTFLCFTSGRDPGIVPRN SKPPESDEAFDLTTPSMEWDNGRTPHLKLPRTKDVIVNGHCVKVKYCDTCLLYRPPRA SHCSICNNCVMRFDHHCPWVGQCIGIRNYRFFFLFISTSTILCIYVFVFSWINVLEKE IGNHSNIWKAMSHDILSVFLIVYCFIAVWFVGGLTIFHFYLICTNQTTYENFRYRYDK KENPYNKGTARNLGEIFFSKIPPSLNKFRSFVEESEHMVLGSVTPNFVEGRISSKEKI DIEMGNRLAEDSGNSLPEILRNLDYVDLEDELKTKQEAGTSFDPFFLDEQDVKKSVEI SIAGDDIVRTEQSSASEKGVREFLQNDTTDDGMRSVQTSTPGNEADTTEKNVECCNSH PTIE" CDS complement(join(17553667..17554239,17559889..17560122, 17561708..17562016,17562625..17562813,17563498..17563557)) /locus_tag="TCM_023699" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG023575t1" /codon_start=1 /product="DHHC-type zinc finger family protein, putative isoform 1" /protein_id="EOY08682.1" /db_xref="Phytozome:POPTR_0016s02580.2" /db_xref="TAIR:AT3G56930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M1K5" /translation="MALYSDHKPKRLYRVWKGSNRFFCGGRLIFGPDVASLFLSTLLI AGPAIAFCIRMYIKIRDENTKHVDRCYPILVVGAILSALDLTFLCFTSGRDPGIVPRN SKPPESDEAFDLTTPSMEWDNGRTPHLKLPRTKDVIVNGHCVKVKYCDTCLLYRPPRA SHCSICNNCVMRFDHHCPWVGQCIGIRNYRFFFLFISTSTILCIYVFVFSWINVLEKE IGNHSNIWKAMSHDILSVFLIVYCFIAVWFVGGLTIFHFYLICTNQTTYENFRYRYDK KENPYNKGTARNLGEIFFSKIPPSLNKFRSFVEESEHMVLGSVTPNFVEGRISSKEKI DIEMGNRLAEDSGNSLPEILRNLDYVDLEDELKTKQEAGTSFDPFFLDEQDVKKSVEI SIAGDDIVRTEQSSASEKGVREFLQNDTTDDGMRSVQTSTPGNEADTTEKNVECCNSH PTIE" mobile_element 17560339..17560418 /note="source:CACAO_M_S_E16386_F9_scaffold_2 2064 2142" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17566283..17566448) /note="source:INTACT292_F22_scaffold_5-int 9539 9643" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17566769..17567394) /note="source:CACAO_M_S_E90022_F9_scaffold_8 13851 14495" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17567386..17568542) /note="source:CACAO_M_E3248_F5_scaffold_1 3302 4506" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17569238..17569418 /note="source:CACAO_M_S_E64832_F14_scaffold_5 11774 11955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17569665..17569707 /note="source:INTACT146F_F14_scaffold_2-int 5684 5726" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17569707..17569739) /note="source:CACAO_M_E65323_F12_scaffold_9 7737 7769" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17571326..17572310) /note="source:CACAO_M_E24389_F60_scaffold_4 5044 6026" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17573654..17576581) /note="source:scaffold_9_CACTA_0934 6701 9634" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17577285..17577521) /note="source:CACAO_M_S_E90022_F9_scaffold_8 14261 14497" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17577522..17579547 /note="source:CACAO_M_E33870_F15_scaffold_4 1 1977" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17580364..17580864 /note="source:CACAO_M_E59041_F15_scaffold_9 2606 3106" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17580865..17581818) /note="source:CACAO_M_S_E90022_F9_scaffold_8 13549 14211" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17583073..17584041 /note="source:CACAO_M_E52278_F17_scaffold_7 1 962" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17585209..17585902 /note="source:CACAO_M_E52278_F17_scaffold_7 1090 1797" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17585903..17586142) /note="source:CACAO_M_E24389_F60_scaffold_4 8714 8963" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17586162..17591906 /note="source:scaffold_8_CACTA_0858 250 5957" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17591908..17592358) /note="source:CACAO_M_E12537_F13_scaffold_3 9890 10340" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17592230..17593304 /note="source:INTACT267_F13_scaffold_2-int 251 1364" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17593286..17593428 /note="source:INTACT120_F22_scaffold_3-int 7021 7170" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17593429..17596366 /note="source:CACAO_M_E42299_F33_scaffold_5 1 2938" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17596368..17598806) /note="source:CACAO_M_E58148_F12_scaffold_9 8386 11310" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17598806..17600271 /note="source:INTACT267_F13_scaffold_2-int 1359 2826" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17600255..17600375) /note="source:CACAO_M_E58148_F12_scaffold_9 10827 10947" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17600272..17601562 /note="source:INTACT595F_F13_scaffold_4-int 2445 3738" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17600406..17602840) /note="source:INTACT1443F_F12_scaffold_9-int 8260 10752" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17602841..17607801 /note="source:INTACT267_F13_scaffold_2-int 2822 7781" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17605287..17608138) /note="source:CACAO_M_S_E124346_F13_scaffold_10 2246 5120" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17608113..17609427) /note="source:CACAO_M_E22348_F13_scaffold_3 823 2132" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17609428..17620970 /note="source:INTACT462_F9_scaffold_5-int 1 11543" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17620971..17621767 /note="source:INTACT462_F9_scaffold_5-int 12527 13361" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17621768..17625104) /note="source:CACAO_M_S_E7105_F60_scaffold_2 2 3351" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17628039..17630728) /note="source:CACAO_M_E69164_F369_scaffold_9 1 2681" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17632938..17633329 /note="source:CACAO_M_S_E34046_F60_scaffold_4 1340 1734" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17633324..17634078) /note="source:CACAO_M_E42395_F3_scaffold_5 1031 1774" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17635977..17637190) /note="source:CACAO_M_S_E4591_F5_scaffold_1 1 1199" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17642364..17642837 /note="source:CACAO_M_S_E109853_F60_scaffold_9 21032 21504" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17642838..17643367) /note="source:CACAO_M_E42395_F3_scaffold_5 1247 1763" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17643376..17644039) /note="source:CACAO_M_E42395_F3_scaffold_5 19186 19934" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17647905..17652579) /note="source:INTACT160_F4_scaffold_7-int 10372 14935" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17652667..17653754) /note="source:INTACT160_F4_scaffold_7-int 9279 10366" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17653987..17655054 /note="source:CACAO_M_E42809_F5_scaffold_5 14472 15515" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17655043..17657746) /note="source:CACAO_M_E84179_F14_scaffold_10 7001 9657" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17657738..17659305 /note="source:INTACT95_F143_scaffold_9-int 1382 2963" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17659291..17663152) /note="source:INTACT160_F4_scaffold_7-int 7619 14939" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17667204..17667522 /note="source:CACAO_M_E58324_F9_scaffold_9 7668 7987" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17667523..17670502 /note="source:CACAO_M_E42306_F7_scaffold_5 1 2980" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17670503..17672728 /note="source:CACAO_M_E58324_F9_scaffold_9 7981 10231" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17672710..17672836) /note="source:CACAO_M_E10727_F15_scaffold_2 2623 2752" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 17676243..17680621 /locus_tag="TCM_023711" /note="dbxref CacaoGD:Thecc1EG023711" mRNA join(17676243..17676860,17677618..17677742, 17678525..17678860) /locus_tag="TCM_023711" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s02720.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s02720.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:PASA:2:TSA:puevd3b022934t1a3; inference alignment:Newbler:10:TSA:cgbaB_g00068t00001" mRNA join(17676400..17676860,17677618..17677742, 17680217..17680621) /locus_tag="TCM_023711" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s02720.1" /inference="similar to AA sequence:ricco:29828.m000381" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Newbler:10:TSA:cgbaL_g07124t00001; inference alignment:Newbler:10:TSA:cgbaL_g07124t00001" CDS join(17676509..17676860,17677618..17677742, 17680217..17680423) /locus_tag="TCM_023711" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29828.m000381" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY08683.1" /db_xref="TAIR:AT3G56820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7LVK0" /translation="MANPRRISHSNNSQSVENPFQFQTQSLSYLSSVKHLLKKPQAFP FMLLLLLLLTWVSLRLQYSSPSHHEQWGKDDGDDGDFKANLFRFRSGLPSDIVKDKRG WLLNPVSLALQNGVKGGAMSCVSVHIGEIRPGCVRGNHRHYTCNETFVIWGAKTKFRV ENNQIVNRGYAEVTIGEDEVAVAACPSGTAHALVNVDPLHSTFFMGCQDSTANSNSSN TDFNVWKDL" CDS join(17676509..17676860,17677618..17677742, 17678525..17678536) /locus_tag="TCM_023711" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY08684.1" /db_xref="Phytozome:POPTR_0006s02720.1" /db_xref="TAIR:AT3G56820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7LVK0" /translation="MANPRRISHSNNSQSVENPFQFQTQSLSYLSSVKHLLKKPQAFP FMLLLLLLLTWVSLRLQYSSPSHHEQWGKDDGDDGDFKANLFRFRSGLPSDIVKDKRG WLLNPVSLALQNGVKGGAMSCVSVHIGEIRPGCVRGNHRHYTCNETFVIWGAKTKFRK CK" mobile_element 17681420..17692673 /note="source:INTACT667_F51_scaffold_5-int 1 11232" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17696834..17696939) /note="source:CACAO_M_E50525_F33_scaffold_7 3794 3900" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17696989..17698082 /note="source:CACAO_M_E24592_F195_scaffold_4 1459 2368" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17699230..17699291 /note="source:CACAO_M_E3129_F369_scaffold_1 2677 2742" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17699239..17699300) /note="source:CACAO_M_E36447_F98_scaffold_5 7985 8053" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17699321..17699405 /note="source:INTACT649F_F368_scaffold_5-int 4134 4215" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17699331..17700645) /note="source:CACAO_M_E24592_F195_scaffold_4 37 1326" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17700724..17702069) /note="source:CACAO_M_E24592_F195_scaffold_4 19417 20770" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17702067..17702314 /note="source:CACAO_M_E5899_F5_scaffold_2 22450 22689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17704685..17707412 /note="source:CACAO_M_E42317_F96_scaffold_5 1 2728" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17709861..17710582) /note="source:INTACT93F_F345_scaffold_2-int 19593 20308" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17710577..17712272) /note="source:CACAO_M_E34534_F369_scaffold_5 7848 9559" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17719175..17719493) /note="source:INTACT93F_F345_scaffold_2-int 18259 18584" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17723201..17724603) /note="source:CACAO_M_S_E65716_F44_scaffold_5 8423 9808" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17724604..17725622) /note="source:CACAO_M_S_E1857_F96_scaffold_1 1706 2723" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17726351..17727181) /note="source:CACAO_M_E85499_F98_scaffold_11 145 975" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17730221..17731931) /note="source:INTACT1308F_F98_scaffold_7-int 3276 4986" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17733650..17735402) /note="source:CACAO_M_E85499_F98_scaffold_11 1 1753" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17735403..17736701) /note="source:CACAO_M_E73087_F12_scaffold_10 7863 9186" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17739765..17740946) /note="source:INTACT126_F14_scaffold_3-int 14959 16139" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17740947..17742928 /note="source:CACAO_M_E42326_F47_scaffold_5 1 1982" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17742929..17746229) /note="source:INTACT126_F14_scaffold_3-int 11683 14963" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17746229..17746355) /note="source:CACAO_M_S_E14932_F233_scaffold_2 2629 2754" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17746356..17766121 /note="source:CACAO_M_S_E64440_F7_scaffold_5 1 19766" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17766142..17767529) /note="source:CACAO_M_E13604_F90_scaffold_3 9789 11115" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17766889..17768219 /note="source:CACAO_M_E47740_F12_scaffold_6 5020 6232" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17771744..17772577) /note="source:CACAO_M_E13604_F90_scaffold_3 8313 9201" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17772571..17773914) /note="source:CACAO_M_E24592_F195_scaffold_4 1 1330" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17774269..17774900 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3824 4455" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17774923..17777222) /note="source:INTACT126_F14_scaffold_3-int 9121 11415" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17774926..17778110 /note="source:CACAO_M_E84179_F14_scaffold_10 4728 7926" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17778045..17779761) /note="source:CACAO_M_E52239_F256_scaffold_7 19810 21509" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17779758..17779839) /note="source:CACAO_M_S_E31635_F14_scaffold_3 5921 6003" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17779840..17780641 /note="source:CACAO_M_S_E84261_F4_scaffold_6 9839 10644" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17780609..17780621 /note="source:CACAO_on_S_E58_scaffold_2 1927 1940" /mobile_element_type="transposon:TIR/Mutator" mobile_element 17780622..17782322 /note="source:CACAO_M_E42342_F98_scaffold_5 1 1701" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 17780960..17787352 /locus_tag="TCM_023723" /note="dbxref CacaoGD:Thecc1EG023723" mRNA join(17780960..17781486,17782132..17782217, 17784316..17785030,17787325..17787352) /locus_tag="TCM_023723" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043562t1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.70 coverage" mobile_element 17782958..17783356 /note="source:CACAO_M_E42342_F98_scaffold_5 1702 2100" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17783357..17784428 /note="source:CACAO_M_S_E84261_F4_scaffold_6 788 1862" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17784427..17785066) /note="source:INTACT126_F14_scaffold_3-int 2463 3102" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS 17784529..17785029 /locus_tag="TCM_023723" /note="paralog of Thecc1EG043562t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08685.1" /translation="MKHAFSGVSLNLGRFMIERMRKACKLEKINLPYGNIITSLVRKK GIWSSRNKADKVKSRDQAIYLASLPKMGYKLDGETFVKTPKVAPRKKTSLPTHLEASS SQFSNEMLFNLFMRIDGKLTDQGVRMLKIEEKLTELENVLKEKEKPPSEPAAADTSAT PSLAEG" mobile_element 17785067..17791832 /note="source:CACAO_M_E42343_F106_scaffold_5 1 6766" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17792165..17799555 /note="source:CACAO_M_E42343_F106_scaffold_5 6767 14157" /mobile_element_type="retrotransposon:LTR/Copia" gene 17793900..17800530 /locus_tag="TCM_023726" /note="dbxref CacaoGD:Thecc1EG023726" mRNA join(17793900..17793999,17799543..17800530) /locus_tag="TCM_023726" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013308t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.34 coverage" CDS 17799637..17800137 /locus_tag="TCM_023726" /note="paralog of Thecc1EG013308t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08686.1" /translation="MLSSLDENPPFAPEPQKKQPSPSNSVEVSIMDVFHQMVREEQVE KEAAKAHAQKSAFIEPAHIAEEQSSKEKEKVAIAPQAKSKPSSKGMKIMATKTKFLKR RKSSNIAEKAKPLVICSPQDLLEVSNKSSPEPSPQKSPPEPSPEPLNVKYFTNESSPS SYLEDA" mobile_element complement(17800705..17803582) /note="source:INTACT118_F5_scaffold_9-int 2756 5843" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17803576..17804865 /note="source:INTACT146F_F14_scaffold_2-int 16257 17557" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17805081..17808120) /note="source:CACAO_M_S_E15214_F378_scaffold_2 1 3085" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17808925..17809031 /note="source:CACAO_M_E23991_F4_scaffold_4 16035 16110" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17811759..17811809 /note="source:CACAO_M_E5702_F90_scaffold_2 13202 13251" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17811779..17811843 /note="source:INTACT146F_F14_scaffold_2-int 744 808" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17811996..17812094 /note="source:INTACT146F_F14_scaffold_2-int 941 1057" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17812000..17812115 /note="source:CACAO_M_E5702_F90_scaffold_2 13491 13610" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17814552..17816384 /note="source:CACAO_M_S_E84261_F4_scaffold_6 1 1849" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17816385..17817838 /note="source:CACAO_M_E14537_F4_scaffold_3 5396 6845" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17817151..17818253 /note="source:CACAO_M_E65050_F7_scaffold_9 15906 16998" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17817811..17819280 /note="source:INTACT649F_F368_scaffold_5-int 12100 13534" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 17819262..17822473 /note="source:CACAO_M_S_E84261_F4_scaffold_6 1845 5076" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17821755..17826470) /note="source:INTACT10_F4_scaffold_6-int 1 4630" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17828362..17828901) /note="source:INTACT187_F9_scaffold_2-int 9009 9548" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17830809..17831475) /note="source:INTACT187_F9_scaffold_2-int 6537 7204" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17835592..17838928 /note="source:INTACT415F_F22_scaffold_4-int 1201 4524" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17841301..17843109 /note="source:CACAO_M_E69046_F12_scaffold_9 1 1794" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17843110..17843814 /note="source:scaffold_2_CACTA_0262 5420 6124" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(17844243..17845606) /note="source:CACAO_Mariner_E180_scaffold_6 6909 8289" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(17845596..17845606) /note="source:CACAO_M_E50239_F322_scaffold_7 2716 2725" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17845607..17848372 /note="source:CACAO_M_E42365_F98_scaffold_5 1 2747" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17848373..17849060) /note="source:CACAO_M_E65323_F12_scaffold_9 7737 8406" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17849061..17854191 /note="source:INTACT754_F12_scaffold_5-int 1768 5256" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17854171..17854248 /note="source:CACAO_M_E59641_F12_scaffold_9 8369 8445" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17854178..17854252) /note="source:INTACT667_F51_scaffold_5-int 9060 9134" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17854253..17855042 /note="source:CACAO_M_E53473_F325_scaffold_8 1 780" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17855043..17857775 /note="source:CACAO_M_E42369_F96_scaffold_5 1 2733" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17857776..17866959) /note="source:CACAO_M_S_E17765_F76_scaffold_3 6479 15690" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17867022..17868601) /note="source:CACAO_M_E43348_F5_scaffold_5 13733 15325" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17868602..17871759) /note="source:CACAO_M_S_E89272_F5_scaffold_8 11004 14115" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17871760..17872806) /note="source:CACAO_M_E24362_F12_scaffold_4 3329 4238" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17872671..17873788 /note="source:INTACT84_F12_scaffold_5-int 8710 9838" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17873888..17881731 /note="source:INTACT1421F_F389_scaffold_9-int 773 9837" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17881832..17883440 /note="source:INTACT1421F_F389_scaffold_9-int 8312 9917" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17883441..17886050) /note="source:CACAO_M_E3197_F15_scaffold_1 310 3363" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17886044..17892269) /note="source:CACAO_M_S_E6619_F15_scaffold_2 4 6248" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17892272..17895517 /note="source:CACAO_M_E69046_F12_scaffold_9 6914 10170" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17899053..17899380 /note="source:INTACT124_F12_scaffold_10-int 3455 3790" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17899388..17902145 /note="source:CACAO_M_E42389_F87_scaffold_5 1 2758" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17902151..17904484) /note="source:CACAO_M_E52239_F256_scaffold_7 3828 6108" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17908815..17908948) /note="source:INTACT319_F3_scaffold_1-int 4218 4355" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17909321..17909396 /note="source:INTACT277_F12_scaffold_9-int 15865 15947" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17912259..17917402) /note="source:CACAO_M_E10603_F306_scaffold_2 8056 13208" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17917397..17917797 /note="source:INTACT702_F306_scaffold_2-int 6171 6571" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17917398..17917740) /note="source:INTACT1327F_F381_scaffold_8-int 1096 1441" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17917741..17924232) /note="source:INTACT95_F143_scaffold_9-int 10294 16810" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17918799..17927686 /note="source:CACAO_M_E43672_F60_scaffold_5 3493 12382" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(17920340..17924768) /locus_tag="TCM_023737" /note="dbxref CacaoGD:Thecc1EG023737" mRNA complement(join(17920340..17921129,17921326..17921749, 17922680..17923016,17923614..17923838,17923935..17924768)) /locus_tag="TCM_023737" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024616t1" /inference="similar to AA sequence:Phytozome:Glyma01g20680.1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.41 coverage" CDS complement(join(17920890..17921129,17921326..17921749, 17922680..17923016,17923614..17923838,17923935..17924250)) /locus_tag="TCM_023737" /note="paralog of Thecc1EG024616t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08687.1" /db_xref="Phytozome:Glyma01g20680.1" /translation="MRVFAVIEKEARVRLSAVTGIMFIFDKDAYVLIDSGSDRSYVST TFASFSDRNLSALEEEIIVHTSLGEQLIRNTCYRHYGLKVGEEEFKVDLILLGIQDFD LILGEHRVLPSCVISAIKALKLVRKGYPAYLAHVIDTSKGEPKLEDVPIVNEFFDVFS DELSRLLPDRELEFSIDLFSVVFLGHVVSGAGIYVDPKKIEAILQWEQSKTVIEIRSF LSLAGYYRRFVQGFSLIVAPLTRLTCKGIKFEWDDVCESQFQELKNRLTFAPILTLPV SWKEFVVYSDASKLGLSTYSIEKLAKLYIDEIVRLHGVPVSIVLDRDPRFTSRFWQKF QDALGTNLRLSTTFHPQTDGQSERTIQTLEDMLRACVIDFTGSWDRHLPLVEFTFQYS IGMAPYEALYGRKCQTPLCWDELGDRKLFNVELIDLTNDKIKIMKGVIQFAKRGKLNP RYIGPFHIIKRIRLVAYRLELPSKLDRIYNVFHVSMLKKYVLDPSQILEAPPIELQED LKFEV" gene 17925806..17941420 /locus_tag="TCM_023738" /note="dbxref CacaoGD:Thecc1EG023738" mRNA join(17925806..17925977,17940914..17941420) /locus_tag="TCM_023738" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003847t1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.49 coverage" mobile_element 17927711..17928267 /note="source:CACAO_M_E52239_F256_scaffold_7 21883 22438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17928268..17935463) /note="source:INTACT224_F176_scaffold_8-int 4172 11319" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17936812..17957683 /note="source:CACAO_M_E42395_F3_scaffold_5 1 20872" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS 17940928..17941242 /locus_tag="TCM_023738" /note="paralog of Thecc1EG003847t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08688.1" /translation="MANSLSLRSILDANKLTGPNFINWFHNIKIVLKQEKKAYVLDGL VLEELSDDATNEENEAYRAYMDDLDQATCVMLASMALNLQKQHEAMNALDIILNLTKM FN" gene complement(17958182..17959591) /locus_tag="TCM_023741" /note="dbxref CacaoGD:Thecc1EG023741" mRNA complement(join(17958182..17959034,17959481..17959591)) /locus_tag="TCM_023741" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.28 coverage" CDS complement(join(17958797..17959034,17959481..17959515)) /locus_tag="TCM_023741" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08689.1" /translation="MHEFQNNNPHGVRPSHEPAPMDSTRSLSPSHHRRLKAPSLLPPL VSSRSAQRTPIFLSFYSAILSPKLSSLSFSFLQIPAVNTLIFPSQN" mobile_element complement(17961026..17961667) /note="source:CACAO_M_E5899_F5_scaffold_2 22048 22689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17961650..17964624) /note="source:INTACT118_F5_scaffold_9-int 9410 12397" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17965254..17965498 /note="source:CACAO_M_E24592_F195_scaffold_4 20616 20836" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 17965584..17965864 /note="source:CACAO_M_E24592_F195_scaffold_4 767 1042" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17970780..17979167) /note="source:CACAO_M_E14113_F106_scaffold_3 12342 20784" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17979726..17980818) /note="source:CACAO_M_E14113_F106_scaffold_3 18696 19789" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(17983523..17993675) /locus_tag="TCM_023744" /note="dbxref CacaoGD:Thecc1EG023744" mRNA complement(join(17983523..17983949,17988593..17988766, 17990147..17990199,17990503..17990632,17992952..17993007, 17993091..17993675)) /locus_tag="TCM_023744" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s12480.2" /inference="similar to AA sequence:ricco:30160.m000434" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4515t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4515t4; inference alignment:Newbler:10:TSA:cgbaB_g00454t00001" mRNA complement(join(17983523..17983949,17988593..17988766, 17990147..17990199,17990503..17990632,17992457..17992534, 17992649..17992708,17992952..17993007,17993091..17993675)) /locus_tag="TCM_023744" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s12480.2" /inference="similar to AA sequence:ricco:30160.m000434" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4515t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4515t4" mRNA complement(join(17983523..17983949,17988593..17988766, 17990147..17990199,17990503..17990632,17992457..17992534, 17992649..17992708,17992810..17992829,17992952..17993007, 17993091..17993675)) /locus_tag="TCM_023744" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s12480.2" /inference="similar to AA sequence:ricco:30160.m000434" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:PASA:2:TSA:puevd3b022964t1a2; inference alignment:Newbler:10:TSA:cgbaB_g00454t00001" CDS complement(join(17983800..17983949,17988593..17988766, 17990147..17990199,17990503..17990632,17992952..17993007, 17993091..17993340)) /locus_tag="TCM_023744" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30160.m000434" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 3" /protein_id="EOY08692.1" /db_xref="TAIR:AT5G44600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A2Q3J0" /translation="MLWVSLGVKFTPIASPLTREGHRRGLFLPLSPSAARSSSTCRPC RCTKSEEETFQVLTAVKTRYNDILVVDTPKSRMLLLDSTHNVHSILQKGDEKWTGSYW LIDKAREYFELSNLERCNEVGGRLQVHIDDAFSPIQNPPKGYAGIIIDLFSDGKVLSQ LQEVEIWLKLSDRLMPDGRLMVNCGGVSESSTDGKTHHQSMDDTWIQNSTIKALATAF PGQVHWKRTPESQGQNYLALTGPLPDLTSWSATVPGCLSEAVKQWRTCKPFP" CDS complement(join(17983800..17983949,17988593..17988766, 17990147..17990199,17990503..17990632,17992457..17992534, 17992649..17992708,17992952..17993007,17993091..17993340)) /locus_tag="TCM_023744" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30160.m000434" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /protein_id="EOY08690.1" /db_xref="TAIR:AT5G44600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GMY4" /translation="MLWVSLGVKFTPIASPLTREGHRRGLFLPLSPSAARSSSTCRPC RCTKSEEETFQVLTAVKTRYNDILVVDTPKSRMLLLDSTHNVHSILQKGDEKWTGSYW DEFASLPPIVPEGPIAIYGLGGGTAAHLMLDVWPSLQLEGWEIDEILIDKAREYFELS NLERCNEVGGRLQVHIDDAFSPIQNPPKGYAGIIIDLFSDGKVLSQLQEVEIWLKLSD RLMPDGRLMVNCGGVSESSTDGKTHHQSMDDTWIQNSTIKALATAFPGQVHWKRTPES QGQNYLALTGPLPDLTSWSATVPGCLSEAVKQWRTCKPFP" CDS complement(join(17983800..17983949,17988593..17988766, 17990147..17990199,17990503..17990632,17992457..17992534, 17992649..17992708,17992810..17992829,17992952..17992970)) /locus_tag="TCM_023744" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30160.m000434" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 2" /protein_id="EOY08691.1" /db_xref="TAIR:AT5G44600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GMY4" /translation="MDWLILAAENDYRDEFASLPPIVPEGPIAIYGLGGGTAAHLMLD VWPSLQLEGWEIDEILIDKAREYFELSNLERCNEVGGRLQVHIDDAFSPIQNPPKGYA GIIIDLFSDGKVLSQLQEVEIWLKLSDRLMPDGRLMVNCGGVSESSTDGKTHHQSMDD TWIQNSTIKALATAFPGQVHWKRTPESQGQNYLALTGPLPDLTSWSATVPGCLSEAVK QWRTCKPFP" mobile_element complement(17991506..17991562) /note="source:CACAO_M_E57478_F378_scaffold_9 1448 1504" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 17996386..17999603 /locus_tag="TCM_023746" /note="dbxref CacaoGD:Thecc1EG023746" mRNA join(17996386..17996724,17996935..17997036, 17997515..17998120,17999580..17999603) /locus_tag="TCM_023746" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS join(17996666..17996724,17996935..17997036, 17997515..17997554) /locus_tag="TCM_023746" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08693.1" /translation="MGINVCPALYSVIYRVITDRMKSLINFATLVLNGKCLRECQPPL TLVLWTVTIREQKIQATQMLSL" mobile_element complement(17998235..17998279) /note="source:CACAO_M_E14113_F106_scaffold_3 22299 22343" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17998275..17998399) /note="source:CACAO_M_E14113_F106_scaffold_3 549 673" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17998696..17999588) /note="source:INTACT118_F5_scaffold_9-int 14990 15884" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(17999541..17999597) /note="source:CACAO_M_E42514_F40_scaffold_5 14440 14495" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(17999602..18000533) /note="source:CACAO_M_E14113_F106_scaffold_3 21160 22120" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18000824..18000969) /note="source:CACAO_M_E14113_F106_scaffold_3 21032 21162" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18000957..18001034) /note="source:CACAO_M_E59539_F98_scaffold_9 2038 2115" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18000973..18001060 /note="source:INTACT296_F13_scaffold_9-int 13173 13260" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18001272..18001377) /note="source:CACAO_M_E14113_F106_scaffold_3 20786 20892" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18001987..18004924 /note="source:CACAO_M_E42408_F72_scaffold_5 1 2938" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18004925..18005527) /note="source:CACAO_M_E14113_F106_scaffold_3 6868 7469" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18005529..18006200 /note="source:CACAO_M_E24592_F195_scaffold_4 1459 2132" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18007903..18008465) /note="source:CACAO_M_E14113_F106_scaffold_3 6306 6871" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18009556..18010714) /note="source:CACAO_M_E24592_F195_scaffold_4 2733 3873" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18010712..18011975) /note="source:CACAO_M_E58324_F9_scaffold_9 8996 10221" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18010722..18012279 /note="source:CACAO_M_E58324_F9_scaffold_9 21588 23205" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18012512..18013415) /note="source:INTACT1218F_F372_scaffold_6-int 7978 8893" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18013416..18015855) /note="source:CACAO_M_S_E66227_F42_scaffold_5 661 3107" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18014155..18016417 /note="source:CACAO_M_E12297_F14_scaffold_3 6959 9195" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18016415..18017990) /note="source:INTACT1218F_F372_scaffold_6-int 5427 7002" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18017992..18024752) /note="source:CACAO_M_E72867_F9_scaffold_10 10987 17043" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18024753..18028370) /note="source:CACAO_M_E72867_F9_scaffold_10 4 3085" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18028373..18033288) /note="source:INTACT597_F267_scaffold_2-int 443 6033" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18031699..18034131 /note="source:INTACT466_F223_scaffold_2-int 2914 5352" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18034161..18034261 /note="source:CACAO_M_E70891_F369_scaffold_10 12323 12420" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18034386..18035717 /note="source:INTACT41F_F338_scaffold_1-int 1137 2427" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18036953..18038253) /note="source:CACAO_M_E35511_F5_scaffold_5 8740 10107" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18039885..18040303 /note="source:CACAO_on_S_E58_scaffold_2 1 463" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(18040355..18040427) /note="source:CACAO_on_S_E58_scaffold_2 1 73" /mobile_element_type="transposon:TIR/Mutator" mobile_element 18044478..18047407 /note="source:CACAO_M_S_E64549_F326_scaffold_5 1 2930" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18047971..18049314) /note="source:INTACT41F_F338_scaffold_1-int 1196 2316" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18052818..18053460) /note="source:scaffold_9_CACTA_0926 3 650" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18052818..18052849 /note="source:CACAO_M_E5326_F22_scaffold_2 20678 20711" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18052895..18054090) /note="source:CACAO_M_E11054_F12_scaffold_2 7421 8588" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18054161..18054756) /note="source:scaffold_4_CACTA_0494 1 597" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18056917..18058104) /note="source:CACAO_M_S_E14330_F13_scaffold_2 1 1189" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18058687..18058840 /note="source:CACAO_M_E5326_F22_scaffold_2 4666 4815" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18066060..18066795 /note="source:CACAO_M_E35511_F5_scaffold_5 2349 3079" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18066657..18066810) /note="source:CACAO_M_E24592_F195_scaffold_4 20755 20908" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18066793..18067010 /note="source:scaffold_5_CACTA_0610 1207 1424" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18066837..18067290) /note="source:CACAO_M_E5326_F22_scaffold_2 22051 22503" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18070130..18070218) /note="source:CACAO_M_E35511_F5_scaffold_5 2247 2335" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18070192..18071657 /note="source:CACAO_M_E35511_F5_scaffold_5 3075 4606" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18072319..18074997 /note="source:CACAO_M_E42430_F369_scaffold_5 1 2679" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18076311..18079503 /note="source:INTACT41_F19_scaffold_5-int 1 3193" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 18076776..18078997 /locus_tag="TCM_023754" /note="dbxref CacaoGD:Thecc1EG023754" mRNA join(18076776..18077253,18077306..18077809, 18078005..18078997) /locus_tag="TCM_023754" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g25810.1.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025656t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.37 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc1Loc4887t9_G2" CDS join(18077441..18077809,18078005..18078958) /locus_tag="TCM_023754" /note="paralog of Thecc1EG025656t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08694.1" /translation="MRRELKRKFLPEHYRQEIFIKFHNLRQKTMTVEEYTIEFEQLHM KYDVHELEEQTVARYLGGLNIGIADVVQLQPYWNLNDVIRVALKVEKQRSRKRSMSSS RQQESSSNDVSQSSVTISPPKYDDEEIEEVSADHGEALIVRRNLNTAMMTKDESWLRH NIFYTRYTSQGKVCNVIIDSGSCENVIANYMVEKLKLPTEVHPHPYKLQWLRKGNEVK VTKRCCVQFSIGSKYEDEVWCDVIPMDACHLLLGRPWQYDRRAHYDGYKNISSFIKDG VKIMLTPLKPEDRPKRQEEDKALITVPTLSKTYCESNHLCLLLVSKKNKVSSSLSNDG QTKLINQSLGNLSRSFVDNHVVNKTAVKYDFPFPRLDDMFIGSKVFLKMDLKKRDQQI RIRLGDELKTTFKTMDELIKWLVWTMTIYGSRHQHGVCPGLLVRAEFF" mobile_element 18079573..18080660 /note="source:CACAO_M_E58601_F7_scaffold_9 10862 11955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18082432..18085417 /note="source:CACAO_M_E42433_F7_scaffold_5 1 2986" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18086768..18087841 /note="source:CACAO_M_E47740_F12_scaffold_6 14694 15769" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18090188..18090276) /note="source:CACAO_M_E48538_F49_scaffold_6 12163 12254" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18090489..18090525) /note="source:CACAO_M_E48538_F49_scaffold_6 12079 12116" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18090595..18091231) /note="source:CACAO_M_E48538_F49_scaffold_6 11337 11882" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18091240..18091431 /note="source:scaffold_6_CACTA_0702 857 1039" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18091340..18091542) /note="source:CACAO_M_E48538_F49_scaffold_6 11101 11314" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18092828..18093046 /note="source:scaffold_6_CACTA_0702 12092 12282" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18095752..18097437 /note="source:CACAO_M_S_E64573_F3_scaffold_5 2 1749" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18099502..18101250 /note="source:CACAO_M_S_E64573_F3_scaffold_5 1 1749" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18101786..18103100) /note="source:CACAO_M_S_E15173_F4_scaffold_2 497 1867" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18105231..18107953) /note="source:CACAO_M_E59644_F369_scaffold_9 1 2722" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18108475..18111059 /note="source:scaffold_4_CACTA_0491 1 2603" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18111043..18112071 /note="source:scaffold_4_CACTA_0491 2086 3095" /mobile_element_type="transposon:TIR/CACTA" gene complement(18113177..18123642) /locus_tag="TCM_023756" /note="dbxref CacaoGD:Thecc1EG023756" mRNA complement(join(18113177..18113633,18113781..18113874, 18114015..18114212,18114977..18115075,18115190..18115349, 18115473..18115570,18116153..18116272,18117207..18117275, 18117794..18117868,18117966..18118091,18118244..18118486, 18118617..18118700,18118883..18118984,18119132..18119251, 18120371..18120409,18120525..18120603,18120969..18121165, 18121261..18121387,18121503..18121630,18121748..18121803, 18121894..18122011,18122597..18123637)) /locus_tag="TCM_023756" /product="Disproportionating enzyme 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025810001" /inference="similar to AA sequence:Phytozome:POPTR_0016s02870.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4538t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4538t3" mRNA complement(join(18113177..18113633,18113781..18113874, 18114015..18114212,18114975..18115075,18115190..18115349, 18115473..18115570,18116153..18116272,18117207..18117278, 18117794..18117868,18117966..18118091,18118244..18118486, 18118617..18118700,18118883..18118984,18119132..18119251, 18120371..18120409,18120525..18120606,18120969..18121165, 18121261..18121387,18121503..18121630,18121748..18121803, 18121894..18122011,18122597..18123637)) /locus_tag="TCM_023756" /product="Disproportionating enzyme 2 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025810001" /inference="similar to AA sequence:Phytozome:POPTR_0016s02870.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4538t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc861t21; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4538t3" CDS complement(join(18113410..18113633,18113781..18113874, 18114015..18114212,18114977..18115075,18115190..18115349, 18115473..18115570,18116153..18116272,18117207..18117275, 18117794..18117868,18117966..18118091,18118244..18118486, 18118617..18118700,18118883..18118984,18119132..18119251, 18120371..18120409,18120525..18120603,18120969..18121165, 18121261..18121387,18121503..18121630,18121748..18121803, 18121894..18122011,18122597..18122953)) /locus_tag="TCM_023756" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Disproportionating enzyme 2 isoform 1" /protein_id="EOY08695.1" /db_xref="Phytozome:POPTR_0016s02870.1" /db_xref="TAIR:AT2G40840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IHJ8" /translation="MANLGSSSATKSMKSVKLKFRIPYFTEWGQRLVVCGSEPTLGSW NVKKGLLLSPFHQGDELIWTGTVAVPCRFCCEYSYYVVDDAKNVLRWEMGNKRKLILP PLLQEGGQTLELHDLWQTGGDALPFRSAFKDVIFCKGSTLNIDRPEVILQDKLDQGES VLVHFKICCPNVEEGTSVYVIGSSTKLGNWNVQDGLKLQYTGEYIWEAYCVIPRSDFP IKYKYCKYGKNGCLSLEIGSTRELSIDSSKSQLQYIFLSDGMLREMPWRGAGVAIPMF SVRSEVDLGVGEFLDLKLLVDWAVESGFHLVQLLPINDTSVHGMWWDSYPYSSLSVFA LHPLYLRVQALSENMPEDIKNEIRNAKERLDGKDVDYEATMATKLSIAKKVFMQEKDL ILNSSSFHKFFSANKDWLKPYAAFCFLRDFFETSDHSQWGRFSNYSKDKLEKLVSKDT SHYDAICFHYYVQFHLHLQLSEAAAYARAKGVILKGDLPIGVDRNSVDTWVYPNLFRM NTSTGAPPDYFDKNGQNWGFPTYNWEEMSKDNYAWWRARLTQMGKYFTAYRIDHILGF FRIWELPDHAMTGLIGKFRPSIPLSQEELEREGIWDFDRLTRPYVRKEFLQEKFGDSW TLIVPTFLNEYLDRYEFKEDCNTEKKIAAKLKSCAEKSLLPESEDKIRHDLFDLLKNI VLIRDPEYARNFYPRFNLEDTSSFRDLDDHSKNVLKRLYYDYYFHRQEKLWQQNALKT LPVLLNSSDMLACGEDLGLIPACVHPVMQELGLIGLRIQRMPSEPDLEFGFPSQYSYM TVCAPSCHDCSTLRAWWEEDEERRHRFFNSVMGSDELPPTQCVPDVAYFIIRQHVEAP SMWAIFPLQDLLALKEEYTTRPAAEETINDPTNPKHYWRYRVHVTMESLMKDEELKAT IKDLIRGSGRSYPPIGEAEKQLSQETAAIALEKKHHVSGPEMTRNGVLQKESAGVM" mRNA complement(join(18113852..18113905,18114015..18114212, 18114977..18115075,18115190..18115349,18115473..18115570, 18116153..18116272,18117207..18117275,18117794..18117868, 18117966..18118091,18118244..18118486,18118617..18118700, 18118883..18118984,18119132..18119251,18120371..18120409, 18120525..18120603,18120969..18121165,18121261..18121387, 18121503..18121630,18121748..18121803,18121894..18122011, 18122597..18123642)) /locus_tag="TCM_023756" /product="Disproportionating enzyme 2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025810001" /inference="similar to AA sequence:Phytozome:POPTR_0016s02870.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc861t21; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc861t21; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4538t3" CDS complement(join(18113882..18113905,18114015..18114212, 18114977..18115075,18115190..18115349,18115473..18115570, 18116153..18116272,18117207..18117275,18117794..18117868, 18117966..18118091,18118244..18118486,18118617..18118700, 18118883..18118984,18119132..18119251,18120371..18120409, 18120525..18120603,18120969..18121165,18121261..18121387, 18121503..18121630,18121748..18121803,18121894..18122011, 18122597..18122953)) /locus_tag="TCM_023756" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Disproportionating enzyme 2 isoform 2" /protein_id="EOY08696.1" /db_xref="Phytozome:POPTR_0016s02870.1" /db_xref="TAIR:AT2G40840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IHJ8" /translation="MANLGSSSATKSMKSVKLKFRIPYFTEWGQRLVVCGSEPTLGSW NVKKGLLLSPFHQGDELIWTGTVAVPCRFCCEYSYYVVDDAKNVLRWEMGNKRKLILP PLLQEGGQTLELHDLWQTGGDALPFRSAFKDVIFCKGSTLNIDRPEVILQDKLDQGES VLVHFKICCPNVEEGTSVYVIGSSTKLGNWNVQDGLKLQYTGEYIWEAYCVIPRSDFP IKYKYCKYGKNGCLSLEIGSTRELSIDSSKSQLQYIFLSDGMLREMPWRGAGVAIPMF SVRSEVDLGVGEFLDLKLLVDWAVESGFHLVQLLPINDTSVHGMWWDSYPYSSLSVFA LHPLYLRVQALSENMPEDIKNEIRNAKERLDGKDVDYEATMATKLSIAKKVFMQEKDL ILNSSSFHKFFSANKDWLKPYAAFCFLRDFFETSDHSQWGRFSNYSKDKLEKLVSKDT SHYDAICFHYYVQFHLHLQLSEAAAYARAKGVILKGDLPIGVDRNSVDTWVYPNLFRM NTSTGAPPDYFDKNGQNWGFPTYNWEEMSKDNYAWWRARLTQMGKYFTAYRIDHILGF FRIWELPDHAMTGLIGKFRPSIPLSQEELEREGIWDFDRLTRPYVRKEFLQEKFGDSW TLIVPTFLNEYLDRYEFKEDCNTEKKIAAKLKSCAEKSLLPESEDKIRHDLFDLLKNI VLIRDPEYARNFYPRFNLEDTSSFRDLDDHSKNVLKRLYYDYYFHRQEKLWQQNALKT LPVLLNSSDMLACGEDLGLIPACVHPVMQELGLIGLRIQRMPSEPDLEFGFPSQYSYM TVCAPSCHDCSTLRAWWEEDEERRHRFFNSVMGSDELPPTQCVPDVAYFIIRQHVEAP SMWAIFPLQKCVKLWF" CDS complement(join(18114122..18114212,18114975..18115075, 18115190..18115349,18115473..18115570,18116153..18116272, 18117207..18117278,18117794..18117868,18117966..18118091, 18118244..18118486,18118617..18118700,18118883..18118984, 18119132..18119251,18120371..18120409,18120525..18120606, 18120969..18121165,18121261..18121387,18121503..18121630, 18121748..18121803,18121894..18122011,18122597..18122953)) /locus_tag="TCM_023756" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Disproportionating enzyme 2 isoform 3" /protein_id="EOY08697.1" /db_xref="Phytozome:POPTR_0016s02870.1" /db_xref="TAIR:AT2G40840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IHJ8" /translation="MANLGSSSATKSMKSVKLKFRIPYFTEWGQRLVVCGSEPTLGSW NVKKGLLLSPFHQGDELIWTGTVAVPCRFCCEYSYYVVDDAKNVLRWEMGNKRKLILP PLLQEGGQTLELHDLWQTGGDALPFRSAFKDVIFCKGSTLNIDRPEVILQDKLDQGES VLVHFKICCPNVEEGTSVYVIGSSTKLGNWNVQDGLKLQYTGEYIWEAYCVIPRSDFP IKYKYCKYGKNGCLSLEIGSTRELSIDSSKSQLQYIFLSDGMLREMPWRGAGVAIPMF SVRSEVDLGVGEFLDLKLLVDWAVESGFHLVQLLPINDTSVHGMWWDSYPYSSSLSVF ALHPLYLRVQALSENMPEDIKNEIRNAKERLDGKDVDYEATMATKLSIAKKVFMQEKD LILNSSSFHKFFSANKDWLKPYAAFCFLRDFFETSDHSQWGRFSNYSKDKLEKLVSKD TSHYDAICFHYYVQFHLHLQLSEAAAYARAKGVILKGDLPIGVDRNSVDTWVYPNLFR MNTSTGAPPDYFDKNGQNWGFPTYNWEEMSKDNYAWWRARLTQMGKYFTAYRIDHILG FFRIWELPDHAMTGLIGKFRPSIPLSQEELEREGIWDFDRLTRPYVRKEFLQQEKFGD SWTLIVPTFLNEYLDRYEFKEDCNTEKKIAAKLKSCAEKSLLPESEDKIRHDLFDLLK NIVLIRDPEYARNFYPRFNLEDTSSFRDLDDHSKNVLKRLYYDYYFHRQEKLWQQNAL KTLPVLLNSSDMLACGEDLGLIPACVHPVMQELGLIGLRIQRMPSEPDLEFGFPSQYS YMTVCVPHHVMTAPPCVPGGKKMKRDGTGFSTL" mRNA complement(join(<18114188..18114212,18114977..18115075, 18115190..18115349,18115473..18115570,18116153..18116272, 18117207..18117275,18117794..18117868,18117966..18118091, 18118244..18118486,18118617..18118700,18118883..18118984, 18119132..18119251,18120371..18120409,18120525..18120603, 18120969..18121165,18121261..18121387,18121503..18121630, 18121748..18121803,18121894..18122011,18122597..18123642)) /locus_tag="TCM_023756" /product="4-alpha-glucanotransferase isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025810001" /inference="similar to AA sequence:Phytozome:POPTR_0016s02870.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc861t15; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc861t21; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4538t3" CDS complement(join(<18114189..18114212,18114977..18115075, 18115190..18115349,18115473..18115570,18116153..18116272, 18117207..18117275,18117794..18117868,18117966..18118091, 18118244..18118486,18118617..18118700,18118883..18118984, 18119132..18119251,18120371..18120409,18120525..18120603, 18120969..18121165,18121261..18121387,18121503..18121630, 18121748..18121803,18121894..18122011,18122597..18122953)) /locus_tag="TCM_023756" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="4-alpha-glucanotransferase isoform 4" /protein_id="EOY08698.1" /db_xref="Phytozome:POPTR_0016s02870.1" /db_xref="TAIR:AT2G40840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IHJ8" /translation="MANLGSSSATKSMKSVKLKFRIPYFTEWGQRLVVCGSEPTLGSW NVKKGLLLSPFHQGDELIWTGTVAVPCRFCCEYSYYVVDDAKNVLRWEMGNKRKLILP PLLQEGGQTLELHDLWQTGGDALPFRSAFKDVIFCKGSTLNIDRPEVILQDKLDQGES VLVHFKICCPNVEEGTSVYVIGSSTKLGNWNVQDGLKLQYTGEYIWEAYCVIPRSDFP IKYKYCKYGKNGCLSLEIGSTRELSIDSSKSQLQYIFLSDGMLREMPWRGAGVAIPMF SVRSEVDLGVGEFLDLKLLVDWAVESGFHLVQLLPINDTSVHGMWWDSYPYSSLSVFA LHPLYLRVQALSENMPEDIKNEIRNAKERLDGKDVDYEATMATKLSIAKKVFMQEKDL ILNSSSFHKFFSANKDWLKPYAAFCFLRDFFETSDHSQWGRFSNYSKDKLEKLVSKDT SHYDAICFHYYVQFHLHLQLSEAAAYARAKGVILKGDLPIGVDRNSVDTWVYPNLFRM NTSTGAPPDYFDKNGQNWGFPTYNWEEMSKDNYAWWRARLTQMGKYFTAYRIDHILGF FRIWELPDHAMTGLIGKFRPSIPLSQEELEREGIWDFDRLTRPYVRKEFLQEKFGDSW TLIVPTFLNEYLDRYEFKEDCNTEKKIAAKLKSCAEKSLLPESEDKIRHDLFDLLKNI VLIRDPEYARNFYPRFNLEDTSSFRDLDDHSKNVLKRLYYDYYFHRQEKLWQQNALKT LPVLLNSSDMLACGEDLGLIPACVHPVMQELGLIGLRIQRMPSEPDLEFGFPSQYSYM TVCAPSCHD" mobile_element 18125342..18125887 /note="source:INTACT135F_F90_scaffold_2-int 13381 13999" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18126025..18128969 /note="source:CACAO_M_S_E64576_F33_scaffold_5 1 2945" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(18131290..18132350) /locus_tag="TCM_023757" /note="dbxref CacaoGD:Thecc1EG023757" mRNA complement(18131290..18132350) /locus_tag="TCM_023757" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS complement(18131540..18131839) /locus_tag="TCM_023757" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08699.1" /translation="MREKKKTKKERRKKKRKKGEKMSVKWSEGKRFGRRKGRAFGLGC VASIEMREGERFGHRKGRALGLGCATPIVGREEERFESFWAWLYGADSKERMRKI" gene 18132409..18134953 /locus_tag="TCM_023758" /note="dbxref CacaoGD:Thecc1EG023758" mRNA join(18132409..18132966,18133418..18133951, 18134056..18134953) /locus_tag="TCM_023758" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete" CDS 18134591..18134938 /locus_tag="TCM_023758" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08700.1" /translation="MEFRWKCFSNKKVSWKFSTKFFIGKAFLMEFLLKISNGIPLEID FLRNYFQRNFPWAMLFQRKFRWKFSTKFHLKRISNKISVGNFQRNSIRNYFPTEIPME LLWDSQQIMHFFQ" mobile_element 18135418..18135525 /note="source:CACAO_M_E86361_F7_scaffold_15 6205 6310" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18135597..18138154) /note="source:CACAO_M_E52239_F256_scaffold_7 19813 22322" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18139273..18139504) /note="source:INTACT189_F49_scaffold_5-int 17863 18056" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18142811..18142913 /note="source:scaffold_3_CACTA_0388 8120 8235" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18147906..18148044 /note="source:CACAO_M_S_E15173_F4_scaffold_2 12549 12687" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18148338..18148526) /note="source:CACAO_M_E42809_F5_scaffold_5 10351 10534" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18149823..18149877 /note="source:CACAO_M_S_E65522_F7_scaffold_5 231 283" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18150054..18150451) /note="source:scaffold_3_CACTA_0388 8075 8453" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18150452..18151736 /note="source:CACAO_M_S_E15173_F4_scaffold_2 12683 13989" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18151735..18152103 /note="source:CACAO_M_S_E15173_F4_scaffold_2 1493 1864" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18154905..18157898 /note="source:CACAO_M_S_E64584_F7_scaffold_5 1 2994" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18157899..18157950 /note="source:CACAO_M_S_E50960_F369_scaffold_4 5243 5295" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18158017..18168669 /note="source:INTACT849F_F15_scaffold_5-int 1 10632" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18168637..18168674 /note="source:CACAO_M_E3109_F15_scaffold_1 2627 2663" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(18171844..18177537) /locus_tag="TCM_023763" /note="dbxref CacaoGD:Thecc1EG023763" mRNA complement(join(18171844..18171942,18174774..18174923, 18177130..18177537)) /locus_tag="TCM_023763" /product="Uncharacterized protein" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete" CDS complement(join(18174785..18174923,18177130..18177272)) /locus_tag="TCM_023763" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08701.1" /translation="MRKNTYLKIQRDITIKYVIINNQPVDSLPHNNIREAPYNTLYFD MVIRRMHTMTPAMCTMWGDAHELGEMGCLAMCTMWGDAHELDEMWSYTS" mobile_element complement(18176938..18177136) /note="source:scaffold_3_CACTA_0388 8281 8460" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18177131..18177162) /note="source:CACAO_M_E50525_F33_scaffold_7 3539 3570" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18189921..18190175 /note="source:CACAO_M_S_E83372_F14_scaffold_6 3563 3854" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18191934..18192297 /note="source:CACAO_M_S_E15173_F4_scaffold_2 1345 1711" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18192296..18192487 /note="source:CACAO_M_S_E15173_F4_scaffold_2 1670 1862" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18193148..18193190) /note="source:CACAO_M_E42809_F5_scaffold_5 6335 6378" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18193292..18194529) /note="source:CACAO_M_S_E16530_F33_scaffold_2 9701 10916" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18193294..18196514 /note="source:CACAO_M_S_E122077_F328_scaffold_10 3 3190" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18203030..18203078 /note="source:INTACT46F_F12_scaffold_1-int 1032 1080" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18203070..18203174 /note="source:CACAO_on_E279_scaffold_9 8337 8441" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 18203434..18206303 /note="source:INTACT629_F279_scaffold_8-int 1 2850" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18206350..18206431) /note="source:CACAO_M_E44709_F9_scaffold_6 18992 19074" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18206557..18206688) /note="source:CACAO_M_E27010_F12_scaffold_4 8248 8377" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18216458..18217046 /note="source:CACAO_M_S_E99574_F14_scaffold_9 21362 21887" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18217667..18217739) /note="source:CACAO_M_S_E6055_F310_scaffold_2 14566 14644" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18219003..18220864 /note="source:CACAO_M_E42453_F4_scaffold_5 1 1862" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18221387..18224271) /note="source:CACAO_M_E14113_F106_scaffold_3 7637 10512" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18224654..18224670) /note="source:CACAO_M_E3248_F5_scaffold_1 1198 1210" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18224671..18225770 /note="source:INTACT70_F13_scaffold_10-int 1 1099" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18226942..18229014 /note="source:CACAO_M_E14113_F106_scaffold_3 18696 20784" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18229311..18229439 /note="source:CACAO_M_E47740_F12_scaffold_6 5851 5977" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18231244..18233829 /note="source:CACAO_M_E3248_F5_scaffold_1 1954 4497" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18235742..18251093 /note="source:CACAO_M_S_E64608_F12_scaffold_5 1 15345" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18251106..18251697) /note="source:scaffold_4_CACTA_0494 1 597" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18254798..18254948 /note="source:CACAO_M_S_E82995_F85_scaffold_6 9387 9529" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18254859..18255020 /note="source:scaffold_4_CACTA_0494 3874 4037" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18255869..18256525) /note="source:CACAO_M_E58819_F24_scaffold_9 15600 16268" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18257326..18258189 /note="source:CACAO_M_E14113_F106_scaffold_3 1 861" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18258190..18260726 /note="source:CACAO_M_S_E64616_F85_scaffold_5 1 2537" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18260827..18261556 /note="source:CACAO_M_S_E64616_F85_scaffold_5 2538 3267" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18261557..18261882) /note="source:CACAO_M_S_E52921_F60_scaffold_5 520 858" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18261558..18262021 /note="source:CACAO_M_E14113_F106_scaffold_3 22442 22926" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18262892..18265988 /note="source:CACAO_M_E42469_F42_scaffold_5 1 3097" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18267830..18269088) /note="source:CACAO_M_E4900_F368_scaffold_2 7155 8411" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18270023..18270370) /note="source:CACAO_M_S_E33139_F368_scaffold_4 8743 9088" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18270370..18270579) /note="source:INTACT649F_F368_scaffold_5-int 9122 9329" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18270580..18272608 /note="source:CACAO_M_E42473_F323_scaffold_5 1 2029" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18273090..18274013 /note="source:CACAO_M_E42473_F323_scaffold_5 2030 2953" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18274014..18274605 /note="source:CACAO_M_E14113_F106_scaffold_3 14325 14916" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18274606..18276754) /note="source:CACAO_M_E56815_F15_scaffold_8 817 2954" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18276752..18277341) /note="source:CACAO_M_S_E5046_F335_scaffold_1 4130 4719" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18277331..18283130 /note="source:INTACT172_F47_scaffold_2-int 4046 9823" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18287091..18289849 /note="source:CACAO_M_E42476_F15_scaffold_5 1 2759" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18291686..18291846) /note="source:scaffold_4_CACTA_0498 1451 1610" /mobile_element_type="transposon:TIR/CACTA" gene complement(18293707..18316426) /locus_tag="TCM_023774" /note="dbxref CacaoGD:Thecc1EG023774" mRNA complement(join(18293707..18294841,18295413..18295661, 18295761..18295899,18295994..18296212,18296546..18296918, 18297060..18297327,18297653..18297785,18306632..18307226, 18316315..18316426)) /locus_tag="TCM_023774" /product="Delta-cadinene synthase isozyme A, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s05270.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031142t1" /inference="similar to AA sequence:Phytozome:GSVIVT01014569001" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.43 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4504t1" CDS complement(join(18294548..18294841,18295413..18295661, 18295761..18295899,18295994..18296212,18296546..18296918, 18297060..18297327,18297653..18297781)) /locus_tag="TCM_023774" /note="paralog of Thecc1EG031142t1" /codon_start=1 /product="Delta-cadinene synthase isozyme A, putative" /protein_id="EOY08702.1" /db_xref="Phytozome:GSVIVT01014569001" /db_xref="TAIR:AT5G23960.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q43714" /translation="MSSQVHSTPASSHDTMSNNENRHLANFRPNIWGELFLSCPSEVN MNATTQLRFEELKQEVRSMLATPMDKPSQKLYLIDAVQRLGVAYHFEKEIEDSLEIIY PNCNVERDDDLCSTAVRFRLLREHGFNVHCESFNKFKDEKGNFKASLISDVRGLLELY EAAHLRVHGEQILEEALAFTSSHLKSAETMVEYPLSTQINNALKRPLRKSLPRLVARN YISIYERYVTQEDTLLEFAKLDFKLLQHLHKKEIKEVYRWWKGLDVAKNFPFIRDRLV ECYLWMLGVYFEPHYSLARTFLTKVSALTSILDDIYDAYGTREELKIFTNAIQRWDIS CINQLPHYMKVCYSELLSVYKEMEELMAEQGKSYRVQLAKEAMKQQVQAFYAEAKWLH ENYTPKLEEYMSIASVTCAYHMLTITSFVGMEDTITKETFIWAYNYPKILRASTIISR LMNDIASHKFEQERGHVASAVECYMKQYGVSEQEAYNEFDKQIKNAWKDINQEFLKPT VVPKPALNRILNLTRVIDLLYKDEDAYTNAGEAAKTSITSLLIDQVPI" mobile_element 18303378..18303665 /note="source:scaffold_4_CACTA_0494 1 290" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18303666..18306843) /note="source:INTACT1327F_F381_scaffold_8-int 6069 9257" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18312741..18315722 /note="source:CACAO_M_S_E15214_F378_scaffold_2 1 3085" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18316507..18317621) /note="source:CACAO_M_E5899_F5_scaffold_2 21586 22691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18317760..18318512) /note="source:CACAO_M_E5899_F5_scaffold_2 20654 21394" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18318667..18319073) /note="source:INTACT280_F60_scaffold_5-int 8792 9199" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18319135..18321755) /note="source:CACAO_M_E58324_F9_scaffold_9 7666 10221" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18321863..18321995 /note="source:CACAO_M_E58819_F24_scaffold_9 16169 16300" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18321891..18321999) /note="source:CACAO_M_E1841_F5_scaffold_1 3067 3180" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18325917..18325963 /note="source:CACAO_M_S_E85957_F12_scaffold_7 9671 9717" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18326818..18326973 /note="source:CACAO_M_S_E119191_F3_scaffold_9 10042 10212" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18326975..18328506 /note="source:CACAO_M_E65050_F7_scaffold_9 18747 20246" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18328507..18331455 /note="source:CACAO_M_E42485_F15_scaffold_5 1 2949" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18331456..18332947) /note="source:INTACT126_F14_scaffold_3-int 3155 4308" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18332947..18333005 /note="source:CACAO_M_S_E119191_F3_scaffold_9 166 224" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18333062..18334379 /note="source:CACAO_M_S_E119191_F3_scaffold_9 217 1530" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18334378..18335723) /note="source:INTACT126_F14_scaffold_3-int 1659 2965" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18336646..18338465) /note="source:CACAO_M_E5899_F5_scaffold_2 11195 13019" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18338462..18338537 /note="source:CACAO_M_S_E119191_F3_scaffold_9 1522 1597" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18338534..18338564 /note="source:CACAO_M_S_E119191_F3_scaffold_9 1658 1688" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(18341858..18345170) /locus_tag="TCM_023776" /note="dbxref CacaoGD:Thecc1EG023776" mRNA complement(join(18341858..18342318,18344222..18344286, 18344502..18344567,18344657..18344806,18344965..18345019, 18345096..18345170)) /locus_tag="TCM_023776" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015438t1" /inference="similar to AA sequence:Phytozome:GSVIVT01010322001" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.12 coverage" CDS complement(join(18342037..18342318,18344222..18344286, 18344502..18344567,18344657..18344690)) /locus_tag="TCM_023776" /note="paralog of Thecc1EG015438t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08703.1" /db_xref="Phytozome:GSVIVT01010322001" /translation="MHSRCNKKLLGVLTLSNFMVDHGSFNTKGLNAQSILAFNSCTLT QGHSAGRQKSFTKKDEMLQYKLEPIPFLEELVRKIKEGKKLLTMDIKRLLPFETNRID FVNGVAAEAKEYFGSNQDEYGGMYFPCGKAWATHYILEKKHFFYLH" mobile_element 18346610..18346833 /note="source:CACAO_M_E5899_F5_scaffold_2 20740 20960" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18347348..18348058 /note="source:INTACT850F_F2_scaffold_5-int 110 820" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18348054..18348762 /note="source:CACAO_M_E1841_F5_scaffold_1 4765 5462" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 18348643..18355479 /locus_tag="TCM_023777" /note="dbxref CacaoGD:Thecc1EG023777" mRNA join(18348643..18348758,18354271..18354797, 18354926..18355479) /locus_tag="TCM_023777" /product="Retrotransposon, unclassified-like protein" /inference="similar to AA sequence:frave:gene09936" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.27 coverage" mobile_element 18349856..18354046 /note="source:INTACT850F_F2_scaffold_5-int 1 4191" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18353957..18354071) /note="source:CACAO_M_E178_F2_scaffold_1 3360 3463" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(18354276..18354797,18354926..18355243) /locus_tag="TCM_023777" /note="dbxref frave:gene09936" /codon_start=1 /product="Retrotransposon, unclassified-like protein" /protein_id="EOY08704.1" /translation="MADSTKVAQFVHHDRMEWDVDKVNSCFPPYESSLICSLTLSYRR SEDRLVWFTSKTGGYEVKLGYKLLCMLDGNTGTSASSNDDAFKVWKKIWNLHIPRKIL VFIWRIFHSCLPTRVALAKRKVAIDTICPLCSQTVETNLHVFWECTFTRAVWLSTKWG FRNVVPYLFQDKRMVAQLGMDMCAQYQIANSGGESVSRPWVEENVSWTLPSGYKLNVD AALIEENGGFIVRDVTGKLVLAGATNLGAVKGATEADLRAVFMGFERRKFILMRLRRT ACK" gene 18356281..18357020 /locus_tag="TCM_023778" /note="dbxref CacaoGD:Thecc1EG023778" mRNA 18356281..18357020 /locus_tag="TCM_023778" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.63 coverage" CDS 18356566..18356781 /locus_tag="TCM_023778" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08705.1" /translation="MKKREEKQGGRKRDLRRGGMLSLEETSDVVAGLDADEWDGGQRW LVVCLGETGVKGLVQRLDSFWKMSYAI" gene complement(18356916..18363422) /locus_tag="TCM_023779" /note="dbxref CacaoGD:Thecc1EG023779" mRNA complement(join(18356916..18357520,18357587..18357689, 18358046..18358805,18358977..18359348,18359427..18359539, 18362802..18363327)) /locus_tag="TCM_023779" /product="Zinc finger family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025813001" /inference="similar to AA sequence:Phytozome:GSVIVT01025813001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1021t1_C2; alternateUTRof:Thecc1EG023779t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1016t6" mRNA complement(join(18357217..18357689,18358046..18358805, 18358977..18359348,18359427..18359539,18362802..18363422)) /locus_tag="TCM_023779" /product="Zinc finger family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025813001" /inference="similar to AA sequence:Phytozome:GSVIVT01025813001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1016t6" mRNA complement(join(18357486..18357510,18357587..18358805, 18358977..18359348,18359427..18359539,18362802..18363401)) /locus_tag="TCM_023779" /product="Zinc finger family protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025813001" /inference="similar to AA sequence:Phytozome:GSVIVT01025813001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1016t5; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1016t6" CDS complement(join(18357622..18357689,18358046..18358805, 18358977..18359348,18359427..18359539,18362802..18363072)) /locus_tag="TCM_023779" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Zinc finger family protein, putative isoform 1" /protein_id="EOY08706.1" /db_xref="Phytozome:GSVIVT01025813001" /db_xref="TAIR:AT3G56590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IHJ9" /translation="MGKGEEEQRLSTSVNSEVSVENAGGPISSLSLLFAPSASACGCG CKSLFGLRCFLVLLLSLALFLSALFWLPPFLNFSDQSDLDLDSRFKDHDIVAGFDVEK PVSFLGDNILQLENDIFDEIGFPTSKVVISSLEPLAGSNITKVVFAVDPDVRYSKISS TSQSLIRASFESLVIHQPSLRLTEFLFGVPRDFEVLKFPGGITVIPPQSAFLLQKVQI LFNFTLNFSIDQIQGNFEKMTSQLKAGLRLATYENLYISLSNSKGSTVAPPTTVQSSV LLAVGNTPSMPRLKQLAQTITGSHSRNLGLNNNMFGRVKQVRLSSILQHSLHGGDGSS NSWSPSPAPLPHPHRSHHHHRHHHHHHHHHSDVLAPAVSPATSTEKGAAAPEDYSPAP ERISPATPWSYKANPPGCQHRNKRIKGKTGQESNIAPVVAPKISPTRSAAPPHVHTSA LAPKPKPRPISHLVPTSSPLPNVAFAHVEAPSKSKSNKENPDRTPSVSPSPIASLSST GFPTMQWPLPLLLAIIIHL" CDS complement(join(18357622..18357689,18358046..18358805, 18358977..18359348,18359427..18359539,18362802..18363072)) /locus_tag="TCM_023779" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Zinc finger family protein, putative isoform 1" /protein_id="EOY08707.1" /db_xref="Phytozome:GSVIVT01025813001" /db_xref="TAIR:AT3G56590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IHJ9" /translation="MGKGEEEQRLSTSVNSEVSVENAGGPISSLSLLFAPSASACGCG CKSLFGLRCFLVLLLSLALFLSALFWLPPFLNFSDQSDLDLDSRFKDHDIVAGFDVEK PVSFLGDNILQLENDIFDEIGFPTSKVVISSLEPLAGSNITKVVFAVDPDVRYSKISS TSQSLIRASFESLVIHQPSLRLTEFLFGVPRDFEVLKFPGGITVIPPQSAFLLQKVQI LFNFTLNFSIDQIQGNFEKMTSQLKAGLRLATYENLYISLSNSKGSTVAPPTTVQSSV LLAVGNTPSMPRLKQLAQTITGSHSRNLGLNNNMFGRVKQVRLSSILQHSLHGGDGSS NSWSPSPAPLPHPHRSHHHHRHHHHHHHHHSDVLAPAVSPATSTEKGAAAPEDYSPAP ERISPATPWSYKANPPGCQHRNKRIKGKTGQESNIAPVVAPKISPTRSAAPPHVHTSA LAPKPKPRPISHLVPTSSPLPNVAFAHVEAPSKSKSNKENPDRTPSVSPSPIASLSST GFPTMQWPLPLLLAIIIHL" CDS complement(join(18358038..18358805,18358977..18359348, 18359427..18359539,18362802..18363072)) /locus_tag="TCM_023779" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Zinc finger family protein, putative isoform 3" /protein_id="EOY08708.1" /db_xref="Phytozome:GSVIVT01025813001" /db_xref="TAIR:AT3G56590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IHJ9" /translation="MGKGEEEQRLSTSVNSEVSVENAGGPISSLSLLFAPSASACGCG CKSLFGLRCFLVLLLSLALFLSALFWLPPFLNFSDQSDLDLDSRFKDHDIVAGFDVEK PVSFLGDNILQLENDIFDEIGFPTSKVVISSLEPLAGSNITKVVFAVDPDVRYSKISS TSQSLIRASFESLVIHQPSLRLTEFLFGVPRDFEVLKFPGGITVIPPQSAFLLQKVQI LFNFTLNFSIDQIQGNFEKMTSQLKAGLRLATYENLYISLSNSKGSTVAPPTTVQSSV LLAVGNTPSMPRLKQLAQTITGSHSRNLGLNNNMFGRVKQVRLSSILQHSLHGGDGSS NSWSPSPAPLPHPHRSHHHHRHHHHHHHHHSDVLAPAVSPATSTEKGAAAPEDYSPAP ERISPATPWSYKANPPGCQHRNKRIKGKTGQESNIAPVVAPKISPTRSAAPPHVHTSA LAPKPKPRPISHLVPTSSPLPNVAFAHVEAPSKSKSNKENPDRTPSVSPSPIASLCE" mobile_element 18364233..18364290 /note="source:CACAO_M_E5899_F5_scaffold_2 20745 20802" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18367470..18367583) /note="source:INTACT189_F49_scaffold_5-int 17787 17903" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18368423..18368544) /note="source:CACAO_M_S_E83372_F14_scaffold_6 1110 1230" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(18371552..18374096) /locus_tag="TCM_023780" /note="dbxref CacaoGD:Thecc1EG023780" mRNA complement(join(18371552..18372783,18373828..18374096)) /locus_tag="TCM_023780" /product="RING-H2 finger C1A, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s03070.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s02910.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g01049t00001" CDS complement(18371825..18372763) /locus_tag="TCM_023780" /codon_start=1 /product="RING-H2 finger C1A, putative" /protein_id="EOY08709.1" /db_xref="Phytozome:POPTR_0016s02910.1" /db_xref="TAIR:AT2G40830.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HDT7" /translation="MSTGRNTHWCYRCRRPVLLQGRDAVCCYCRGGFVQELDDMVHIS PLDFFGLDGDEDRIQRFGLMDAFSALMRQRLADRNFNHNIRGRTDSIPENTSPFGPLL IFGGQIPFRLSGNGGFEALFNGAPGIGFTRGNAGDYFIGPGLEELFEQLSANDRRGPP PASRSSIDAMPTIKISRRHLHSDSHCPVCKDKFELGSEARQMPCNHIYHSDCIIPWLE QHNSCPVCRQELPPQGPGSSRNYHSSGQSSSSSLGTNSSGRESRENHSRRNPFSYFWP FRSSNSSSSHNGAAGSSSPSVHENNHSMGYSGWPFD" mobile_element 18375866..18386821 /note="source:CACAO_M_E42491_F52_scaffold_5 1 12045" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18387357..18389875 /note="source:CACAO_M_E11054_F12_scaffold_2 7421 9795" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 18394120..18402793 /locus_tag="TCM_023783" /note="dbxref CacaoGD:Thecc1EG023783" mRNA join(18394120..18394233,18397887..18397997, 18398084..18398227,18398758..18399390,18402517..18402793) /locus_tag="TCM_023783" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" mobile_element 18394920..18398006 /note="source:CACAO_M_E42495_F306_scaffold_5 1 3087" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(18397943..18397997,18398084..18398227, 18398758..18399374) /locus_tag="TCM_023783" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08710.1" /translation="MNVYRDIAADVTGSKGVTAKPIDEEPLAFNNPKGFGGLMLGQLA VKRSVLVGETSIRELAAYLLNHGAMMTQEFCSDEETSSILETLCAKAKESVFNTLEAD DDKTGVGIEDLEIFQFDDNETKGIYNEVADFSKLLQSHDLNLAKSQKSLRFSSVRSMS GFYGALLSPLYEEIDNGDTNYDTKNIVAKNGDDNDKNSSCTNDDNKAGGLVKSMSFSV QNYNHESRGIFFGNMSEDEWEMFLKSFEKLLPRVFEGVKCMCAKQRLGTSCKF" mobile_element 18402150..18402241 /note="source:CACAO_M_E52239_F256_scaffold_7 6361 6453" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18407051..18409757 /note="source:CACAO_M_S_E64654_F231_scaffold_5 1 2707" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18410618..18410752) /note="source:CACAO_M_S_E65068_F306_scaffold_5 6026 6123" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(18413068..18415293) /locus_tag="TCM_023784" /note="dbxref CacaoGD:Thecc1EG023784" mRNA complement(join(18413068..18414127,18414488..18414863, 18415166..18415293)) /locus_tag="TCM_023784" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039587t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.30 coverage" CDS complement(join(18413770..18414127,18414488..18414618)) /locus_tag="TCM_023784" /note="paralog of Thecc1EG039587t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08711.1" /translation="MSSKTQYLFVRDLEILWTRLRERYDHTKTVILPQAQYDWQHLKL QSNLRPYHGKGKKPVKKHDTSICHRCGMSRHYSRTCRTPKHFVDLYQASLKDKGKRIK THAIENSTALTNVETNNASVKMTRLAFVEVRTFLEVSDLFKTLIAKIRHQNDKKQPRL RI" gene complement(18416699..18427878) /locus_tag="TCM_023785" /note="dbxref CacaoGD:Thecc1EG023785" mRNA complement(join(18416699..18416996,18417114..18417231, 18424449..18424538,18427462..18427519,18427701..18427878)) /locus_tag="TCM_023785" /product="HIS triad family protein 3" /inference="alignment:exonerate- protein:2:TAIR:AT3G56490.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006052t2" /inference="similar to AA sequence:frave:gene27916" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13851t2" CDS complement(join(18416929..18416996,18417114..18417231, 18424449..18424538,18427462..18427519,18427701..18427834)) /locus_tag="TCM_023785" /note="dbxref frave:gene27916; paralog of Thecc1EG006052t2" /codon_start=1 /product="HIS triad family protein 3" /protein_id="EOY08712.1" /db_xref="TAIR:AT3G56490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P42855" /translation="MSSEINKSRLLVLSSHFTDLHSESSLMASEKEAALAAVPSDSPT IFDKIINKEIPSKVVYEDDKVLAFRDIAPQAPTHILIIPKSKDGLTGLSKAEERHCEI LGHLLYIAKLVAKQEGLEDGFRIVINDGPQGCQSVYHIHVHLLGGRQMNWPPG" mobile_element 18428196..18428330 /note="source:CACAO_on_S_E58_scaffold_2 339 466" /mobile_element_type="transposon:TIR/Mutator" mobile_element 18434967..18435247 /note="source:INTACT498_F231_scaffold_5-int 1 281" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18435245..18435341) /note="source:CACAO_M_E35674_F13_scaffold_5 5035 5130" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18435262..18442748 /note="source:CACAO_M_S_E18399_F231_scaffold_3 2108 9607" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18441032..18443602) /note="source:CACAO_M_E42395_F3_scaffold_5 12521 15059" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18445538..18446749 /note="source:INTACT724_F4_scaffold_8-int 6354 7586" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18445672..18448108) /note="source:INTACT1443F_F12_scaffold_9-int 8256 10754" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18448238..18458503 /note="source:CACAO_M_E42503_F14_scaffold_5 1 10266" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18459315..18461624 /note="source:INTACT410F_F357_scaffold_4-int 1 2397" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18467852..18468267) /note="source:CACAO_M_E85507_F96_scaffold_11 9507 9922" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18468368..18469333) /note="source:CACAO_M_E45504_F98_scaffold_6 7582 8546" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18469434..18472662) /note="source:CACAO_M_E45504_F98_scaffold_6 4291 7520" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18475502..18477127) /note="source:CACAO_M_S_E1857_F96_scaffold_1 1 1629" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18477096..18477132) /note="source:INTACT263_F12_scaffold_6-int 7150 7186" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18478102..18479949 /note="source:CACAO_M_E42507_F4_scaffold_5 1 1848" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18481380..18481549 /note="source:CACAO_M_E1841_F5_scaffold_1 4230 4441" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18482584..18485687 /note="source:CACAO_M_E42509_F306_scaffold_5 1 3104" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 18488953..18491682 /locus_tag="TCM_023790" /note="dbxref CacaoGD:Thecc1EG023790" mRNA join(18488953..18489179,18491244..18491682) /locus_tag="TCM_023790" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042330t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(18489073..18489179,18491244..18491586) /locus_tag="TCM_023790" /note="paralog of Thecc1EG042330t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08713.1" /translation="MAMEGRYAGGSRVGHSLLRKHVFSSKNFFLVETINSKRWNPTDH ASIMLFGFSENLGVKNSLQVELLALYRGLVLCREYNITRLWIEMDAMVVIRLLQENYR GLYDIRYLLVTIRQLLSQFFFCISHIYREGNQAADLLVNMGHAHQNL" mobile_element 18489158..18489205 /note="source:INTACT49_F22_scaffold_9-int 7178 7225" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18494513..18494674 /note="source:CACAO_M_E49195_F17_scaffold_6 3407 3565" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18511627..18513332) /note="source:INTACT296_F13_scaffold_9-int 12738 14447" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18513333..18516527) /note="source:INTACT1327F_F381_scaffold_8-int 6069 9257" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18516542..18517438) /note="source:INTACT595F_F13_scaffold_4-int 2445 3378" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18517655..18517745) /note="source:CACAO_M_E84179_F14_scaffold_10 6990 7075" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18519911..18531252 /note="source:CACAO_M_E42514_F40_scaffold_5 1 11342" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18532695..18535316 /note="source:CACAO_M_E42514_F40_scaffold_5 12585 15206" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18535417..18542731 /note="source:CACAO_M_E42514_F40_scaffold_5 15207 22521" /mobile_element_type="retrotransposon:LTR/Copia" gene 18540640..18541473 /locus_tag="TCM_023795" /note="dbxref CacaoGD:Thecc1EG023795" mRNA 18540640..18541473 /locus_tag="TCM_023795" /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8, putative" /inference="alignment:exonerate- protein:2:frave:gene08647.5" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026439t1" /inference="similar to AA sequence:Phytozome:Glyma01g29320.1" /note="quality class is strong-expresste, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.20 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc8Loc2022t1" CDS 18540830..18541291 /locus_tag="TCM_023795" /note="paralog of Thecc1EG026439t1" /codon_start=1 /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8, putative" /protein_id="EOY08714.1" /db_xref="Phytozome:Glyma01g29320.1" /db_xref="TAIR:AT4G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AP66" /translation="MFVEASRRLSRARWGVPSRDTISNFVSYDSLSPSYRAFVLFVSS ISIPQGWQKPYHDPKWKEAMIEEMKALVKNETWELVTPPLGKKPVGCKWVFIVKHKAD GSVERYKAKLVAKGFTQTYGVDYQETFALVAKMNTIRIMLSCAANLDWDLQ" mobile_element complement(18551007..18551081) /note="source:scaffold_3_CACTA_0384 7506 7580" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18553957..18554012) /note="source:scaffold_3_CACTA_0384 5554 5609" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18554986..18555302) /note="source:CACAO_M_E59164_F88_scaffold_9 85 391" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18555303..18556522) /note="source:CACAO_M_E45544_F3_scaffold_6 468 1688" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18556513..18559472 /note="source:CACAO_M_E42521_F143_scaffold_5 1 2960" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18559473..18563288) /note="source:CACAO_M_E12058_F3_scaffold_2 3101 6995" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18563288..18563838) /note="source:INTACT1373F_F385_scaffold_8-int 17255 17835" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18564587..18565727 /note="source:CACAO_M_S_E19828_F19_scaffold_3 3091 4267" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18565715..18565831) /note="source:CACAO_M_S_E85473_F233_scaffold_7 6682 6796" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18565832..18568940 /note="source:CACAO_M_S_E64684_F306_scaffold_5 1 3109" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18568905..18568960 /note="source:scaffold_9_CACTA_0934 9629 9681" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18568940..18572869 /note="source:INTACT518_F239_scaffold_2-int 3018 6895" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18573087..18573647) /note="source:INTACT1373F_F385_scaffold_8-int 17255 17834" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18575089..18577225 /note="source:INTACT518_F239_scaffold_2-int 7701 9836" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18577190..18577230 /note="source:CACAO_M_S_E7317_F4_scaffold_2 820 860" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18577223..18577894) /note="source:CACAO_M_S_E64889_F3_scaffold_5 1 679" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18577895..18577938) /note="source:INTACT459_F220_scaffold_4-int 8337 8380" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18579442..18581103) /note="source:CACAO_M_S_E64889_F3_scaffold_5 1 1693" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18583165..18583251 /note="source:CACAO_M_E49413_F3_scaffold_7 596 698" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18583252..18591310 /note="source:CACAO_M_E42530_F72_scaffold_5 1 8059" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18592631..18592906) /note="source:CACAO_on_E18_scaffold_1 2858 5650" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(18592907..18595388) /note="source:CACAO_M_S_E109718_F317_scaffold_9 1 2502" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18595389..18596268) /note="source:CACAO_M_S_E89272_F5_scaffold_8 7321 8203" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18596291..18596920) /note="source:CACAO_M_S_E89272_F5_scaffold_8 6734 7342" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18597886..18597903 /note="source:INTACT167_F5_scaffold_2-int 3813 3989" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18597904..18598059 /note="source:CACAO_M_E3654_F4_scaffold_1 6440 6595" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18598060..18598594) /note="source:CACAO_M_E42514_F40_scaffold_5 15247 15780" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18598704..18600068 /note="source:CACAO_M_E9272_F4_scaffold_2 499 1854" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18600333..18601466 /note="source:CACAO_PIF_E465_scaffold_115 2037 3160" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 18600636..18611220 /locus_tag="TCM_023799" /note="dbxref CacaoGD:Thecc1EG023799" mRNA join(18600636..18600779,18609823..18611220) /locus_tag="TCM_023799" /product="Calmodulin-binding protein of 25 kDa, putative" /inference="alignment:exonerate- protein:2:ricco:30106.m000644" /inference="similar to AA sequence:Phytozome:POPTR_0016s02940.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5926t1" mobile_element 18601527..18604131 /note="source:CACAO_PIF_E465_scaffold_115 3158 5737" /mobile_element_type="transposon:TIR/PIF-Harbinger" CDS 18609876..18610604 /locus_tag="TCM_023799" /codon_start=1 /product="Calmodulin-binding protein of 25 kDa, putative" /protein_id="EOY08715.1" /db_xref="Phytozome:POPTR_0016s02940.1" /db_xref="TAIR:AT3G56880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HDU0" /translation="MASSENLASIEPWTFRPRFADSWISEAFARDTETLTRALEKSIS NSFTNPDSLSPLLNLINPNTPPTPTPTSTSTPAPTPTPTPTPSASNVSGSDPETAPKR KRTTILPPTATGKVSKRKPRACKRSQTTFITADPANFRQMVQQVTGVRFGNAQMSLSP ILKPEPQRPGSRLPNGAGPGCLPTLDTSAFLLDHQQQSSGVVVGSSLLPFQSSVVAEG VASAGATLDCDTFSSFPTLESWKV" mobile_element complement(18615340..18615697) /note="source:CACAO_M_E35176_F7_scaffold_5 12839 13195" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18615382..18617811 /note="source:CACAO_M_E69760_F9_scaffold_9 6707 9124" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18620146..18621452) /note="source:CACAO_M_S_E64023_F13_scaffold_5 19801 21081" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(18625310..18637267) /locus_tag="TCM_023800" /note="dbxref CacaoGD:Thecc1EG023800" mRNA complement(join(18625310..18626096,18627302..18627388, 18627502..18627597,18627669..18627741,18628073..18628167, 18630830..18630917,18632594..18633101,18636099..18636110, 18637052..18637267)) /locus_tag="TCM_023800" /product="Peroxisomal membrane 22 kDa family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s03100.1" /inference="similar to AA sequence:Phytozome:GSVIVT01025824001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08866t00001" mRNA complement(join(18625736..18626096,18627302..18627388, 18627505..18627597,18627669..18627741,18628073..18628167, 18630830..18630917,18632594..18633133)) /locus_tag="TCM_023800" /product="Peroxisomal membrane 22 kDa family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s03100.1" /inference="similar to AA sequence:Phytozome:GSVIVT01025824001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01579t00001; inference alignment:Newbler:10:TSA:cgbaB_g08866t00001" mRNA complement(join(18625925..18626096,18627302..18627388, 18627505..18627597,18627698..18627741,18628073..18628167, 18630830..18630917,18632594..18633157)) /locus_tag="TCM_023800" /product="Peroxisomal membrane 22 kDa family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s03100.1" /inference="similar to AA sequence:Phytozome:GSVIVT01025824001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc2t3_C2; inference alignment:Newbler:10:TSA:cgbaB_g08866t00001" CDS complement(join(18625981..18626096,18627302..18627388, 18627505..18627597,18627698..18627741,18628073..18628167, 18630830..18630917,18632594..18633078)) /locus_tag="TCM_023800" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Peroxisomal membrane 22 kDa family protein isoform 3" /protein_id="EOY08718.1" /db_xref="Phytozome:GSVIVT01025824001" /db_xref="TAIR:AT5G19750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IHK6" /translation="MPRVFHFAKPILPKLSKTVTITTAIDIKAEQHSSSFSSRLRIAT MVPNSVALTRTFPRLYSIMSFSSKNLCLSARQTRFLVRGFKSRSYSFFLSSTHGFKEF GSRKTGAGQLGFDCFRVSAVSDGGSRGIGGFGGSGDENSGGKGEGADGNGGRNDWSLL SWYLALLAKYPVFTKAVTSALLTFIGDLICQLAIDHVPSLDVKRTFLFTLLGLVLVGP TLHFWYLCLSNLVKLPGASVSLFSYIYWSFLIYIGDTRRKAFASCTQTSTGVVFCCSC ELAAVDTFPISQLSICPTAISGPCCKFHCFGLECDSLIQSSQRDTDKIGIAQCDDRIM S" CDS complement(join(18626016..18626096,18627302..18627388, 18627505..18627597,18627669..18627741,18628073..18628167, 18630830..18630917,18632594..18633078)) /locus_tag="TCM_023800" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Peroxisomal membrane 22 kDa family protein isoform 2" /protein_id="EOY08717.1" /db_xref="Phytozome:GSVIVT01025824001" /db_xref="TAIR:AT5G19750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IHK6" /translation="MPRVFHFAKPILPKLSKTVTITTAIDIKAEQHSSSFSSRLRIAT MVPNSVALTRTFPRLYSIMSFSSKNLCLSARQTRFLVRGFKSRSYSFFLSSTHGFKEF GSRKTGAGQLGFDCFRVSAVSDGGSRGIGGFGGSGDENSGGKGEGADGNGGRNDWSLL SWYLALLAKYPVFTKAVTSALLTFIGDLICQLAIDHVPSLDVKRTFLFTLLGLVLVGP TLHFWYLCLSNLVKLPGASGAFLRLLLDQFLFSPIFIGVFLSTLVTLEGRPSQVVPKL QQEWFSAVLANWQLWIPFQFLNFRFVPQQFQVLAANFIALVWNVILSFKAHKEILTK" CDS complement(join(18626016..18626096,18627302..18627388, 18627502..18627597,18627669..18627741,18628073..18628167, 18630830..18630917,18632594..18633078)) /locus_tag="TCM_023800" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Peroxisomal membrane 22 kDa family protein isoform 1" /protein_id="EOY08716.1" /db_xref="Phytozome:GSVIVT01025824001" /db_xref="TAIR:AT5G19750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IHK6" /translation="MPRVFHFAKPILPKLSKTVTITTAIDIKAEQHSSSFSSRLRIAT MVPNSVALTRTFPRLYSIMSFSSKNLCLSARQTRFLVRGFKSRSYSFFLSSTHGFKEF GSRKTGAGQLGFDCFRVSAVSDGGSRGIGGFGGSGDENSGGKGEGADGNGGRNDWSLL SWYLALLAKYPVFTKAVTSALLTFIGDLICQLAIDHVPSLDVKRTFLFTLLGLVLVGP TLHFWYLCLSNLVKLPGASGAFLRLLLDQFLFSPIFIGVFLSTLVTLEGRPSQVVPKL QQVEWFSAVLANWQLWIPFQFLNFRFVPQQFQVLAANFIALVWNVILSFKAHKEILTK " gene 18628231..18630831 /locus_tag="TCM_023801" /note="dbxref CacaoGD:Thecc1EG023801" mRNA 18628231..18630831 /locus_tag="TCM_023801" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is noncode_complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc334t2" CDS 18628368..18628742 /locus_tag="TCM_023801" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08719.1" /translation="MFHESSQLSFPSLDIQFEAGESTLECLLNTFGGCFQRSPSPLFP HSPPLKHDILLSYCASSCEIATKTTTLLRHYHLSFFLSVLSSLFLFHLRDFSLLSLQS SQDTCLSLSSTTSCCPVMLTCL" gene 18633228..18640869 /locus_tag="TCM_023802" /note="dbxref CacaoGD:Thecc1EG023802" mRNA join(18633228..18633494,18634437..18635301, 18640831..18640869) /locus_tag="TCM_023802" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.35 coverage" CDS 18634560..18634808 /locus_tag="TCM_023802" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08720.1" /translation="MGQQAGCSVPKKQGYGAKASESWTLQCQEDEVAVHGAASKVLNT KEARLWCQGIRELGVTAPKSEGHDASTIFFSFFFSYLI" mobile_element 18639067..18642401 /note="source:CACAO_M_S_E64699_F85_scaffold_5 1 3335" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18642403..18643238) /note="source:CACAO_M_E49195_F17_scaffold_6 1676 2531" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18643934..18646227 /note="source:CACAO_M_E50108_F4_scaffold_7 1353 3649" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18646569..18648726) /note="source:INTACT160_F4_scaffold_7-int 2895 5070" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18649258..18650947 /note="source:CACAO_M_S_E90022_F9_scaffold_8 12818 14500" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18652322..18652737) /note="source:CACAO_M_E60460_F281_scaffold_9 2501 2920" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18652370..18655264 /note="source:CACAO_M_E45308_F72_scaffold_6 47 2952" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18655778..18657290 /note="source:scaffold_2_CACTA_0263 3120 4628" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18658368..18658877) /note="source:scaffold_2_CACTA_0261 2395 2877" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18658863..18658947 /note="source:CACAO_M_E86305_F7_scaffold_15 6216 6299" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18659549..18659598) /note="source:CACAO_M_E33213_F12_scaffold_4 9737 9788" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18659784..18660199) /note="source:CACAO_M_E33213_F12_scaffold_4 9438 9859" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18660200..18660259 /note="source:CACAO_M_S_E1495_F60_scaffold_1 2634 2693" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18660221..18661290) /note="source:CACAO_M_E42809_F5_scaffold_5 5149 6195" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18661271..18661862) /note="source:scaffold_2_CACTA_0261 1830 2413" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18662757..18663191) /note="source:CACAO_M_E33213_F12_scaffold_4 9261 9691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18663295..18663443) /note="source:CACAO_M_E33213_F12_scaffold_4 9101 9250" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18664847..18665199) /note="source:CACAO_M_E42520_F85_scaffold_5 4 345" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18665210..18666351 /note="source:INTACT405F_F91_scaffold_4-int 1 1164" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18666343..18666396) /note="source:CACAO_M_E86305_F7_scaffold_15 6225 6278" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18668841..18668960 /note="source:scaffold_2_CACTA_0261 1 131" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18668922..18670277 /note="source:CACAO_M_S_E122136_F76_scaffold_10 5127 6475" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18670268..18671784 /note="source:CACAO_M_S_E122136_F76_scaffold_10 16703 18183" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18675148..18676982) /note="source:scaffold_4_CACTA_0497 8624 10337" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18675774..18678345 /note="source:scaffold_9_CACTA_0937 1121 3746" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18683167..18685268) /note="source:CACAO_M_E12544_F89_scaffold_3 911 3013" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18685269..18688398) /note="source:CACAO_M_E50407_F82_scaffold_7 175 3303" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18687792..18688478 /note="source:INTACT405F_F91_scaffold_4-int 6897 7604" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18688387..18688493) /note="source:CACAO_M_S_E38262_F319_scaffold_4 3007 3113" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18688477..18689386) /note="source:CACAO_M_E52284_F277_scaffold_7 1 909" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18692839..18692987) /note="source:scaffold_2_CACTA_0261 1239 1384" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18693084..18693235 /note="source:CACAO_M_S_E97714_F207_scaffold_8 218 361" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18696508..18699482 /note="source:CACAO_M_E42558_F7_scaffold_5 1 2975" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18700973..18703890 /note="source:CACAO_M_S_E64722_F80_scaffold_5 1 2918" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18704998..18705089) /note="source:CACAO_M_S_E4591_F5_scaffold_1 18869 18962" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18705191..18705518) /note="source:CACAO_M_S_E4591_F5_scaffold_1 18581 18881" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18707458..18708122) /note="source:CACAO_M_E84368_F4_scaffold_10 1 678" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18708138..18710514 /note="source:CACAO_M_E84368_F4_scaffold_10 4643 7035" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18710515..18711167 /note="source:CACAO_M_E86361_F7_scaffold_15 6206 6861" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(18710755..18725845) /locus_tag="TCM_023805" /note="dbxref CacaoGD:Thecc1EG023805" mRNA complement(join(18710755..18710761,18719553..18719886, 18719965..18720057,18720184..18720308,18720438..18720719, 18720795..18720865,18720961..18721053,18721167..18721262, 18721347..18721448,18721590..18721679,18722338..18722429, 18723371..18723774,18725461..18725845)) /locus_tag="TCM_023805" /product="Serine carboxypeptidase-like 45" /inference="alignment:exonerate- protein:2:ricco:30180.m001035" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008386t2" /inference="similar to AA sequence:ricco:30180.m001035" /note="quality class is medium, express is medium, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Newbler:10:TSA:cgbaB_g13931t00001" mobile_element complement(18711310..18713327) /note="source:CACAO_M_E33213_F12_scaffold_4 8120 10082" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18713328..18719519 /note="source:CACAO_M_E84368_F4_scaffold_10 7031 13211" /mobile_element_type="retrotransposon:LTR/Copia" CDS complement(join(18719592..18719886,18719965..18720057, 18720184..18720308,18720438..18720719,18720795..18720865, 18720961..18721053,18721167..18721262,18721347..18721448, 18721590..18721679,18722338..18722429,18723371..18723774, 18725461..18725475)) /locus_tag="TCM_023805" /note="dbxref ricco:30180.m001035; paralog of Thecc1EG008386t2" /codon_start=1 /product="Serine carboxypeptidase-like 45" /protein_id="EOY08721.1" /db_xref="TAIR:AT1G28110.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B6U0V5" /translation="MYDDVTCTSLWTRFMRAKYYTGRISRQIQLKLHDSQTWKRMLAS CPVTGQHIRWWIGKAELLFWHQCWMGDEPLVNHFLSFASSMIRMSNFYHNGTWNVGKL NDGLPDDVVAKILKIPIDESQVDEAYWAPTSDDRFTTKEGNQAADLLSNQGYTHQNLH VFSQAEGQLKDENQPRHLFYYFVEAEIDPASKPLVLWLNGGPGYSSVGAGAFCEHGPF RPSADILLKNEYSWNKEANMLYLESPAGVGFSYSANKSFYTSVNDEMTARDNLAFLEK WLAKFPEYKNRDLFITGESYGGHYVPQLAELVSQSTNKFNLRGIAIGNPLLEYNADFN SRAEFYWSHGLISDTTYEALTSVCNYSQYRRERDSGSLTPVCSAVANQVSREISSFVD IYDVTLDVCLSSLFSQSKILTELEPEEEVDVCVEDKTVQYLNRKDVQEAFHAQLVGIT AWTVCSDVLKYKMQDLEIPTIHILDRLVRSGIRVWVYSGDQDSVIPLIGTRILINGLA KELGLNTSVAYRVWFAGRQVASWTQGYGDILTFATIRGASHEAPFSQPQRSLVLFKAF LAGKPLPETSLIDEQMEHK" mobile_element 18725490..18725654 /note="source:INTACT481_F226_scaffold_1-int 9784 9948" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18725695..18734609 /note="source:INTACT160_F4_scaffold_7-int 7619 14939" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18734610..18737546) /note="source:CACAO_M_S_E86202_F72_scaffold_7 1 2953" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18737929..18738452 /note="source:INTACT481_F226_scaffold_1-int 185 4054" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18738453..18741833) /note="source:scaffold_3_CACTA_0384 1654 5030" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18743208..18743247 /note="source:scaffold_6_CACTA_0702 12687 12726" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(18745092..18745534) /note="source:scaffold_6_CACTA_0702 12997 13447" /mobile_element_type="transposon:TIR/CACTA" gene 18745690..18747764 /locus_tag="TCM_023809" /note="dbxref CacaoGD:Thecc1EG023809" mRNA join(18745690..18746157,18747733..18747764) /locus_tag="TCM_023809" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011481t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS 18745717..18746085 /locus_tag="TCM_023809" /note="paralog of Thecc1EG011481t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08722.1" /translation="MDNEYKVWYHFLKAKMLPIKHLSDVTKDRAMLLYAIILGKSIDI GQLIFNSIVHTTRSIRDGLWYPSFITGLCKQVGLQWTSNEELLHLIVPLDKGIIHRFH THEHSTTSGSSSFAPRPPLH" gene complement(18755064..18758334) /locus_tag="TCM_023810" /note="dbxref CacaoGD:Thecc1EG023810" mRNA complement(join(18755064..18755632,18755747..18755864, 18755973..18756062,18756255..18756379,18756500..18756832, 18756927..18756997,18757132..18757224,18757320..18757415, 18757725..18757826,18757935..18758334)) /locus_tag="TCM_023810" /product="Serine carboxypeptidase 45" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s03480.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014737t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s03480.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc297t4" CDS complement(join(18755486..18755632,18755747..18755864, 18755973..18756062,18756255..18756379,18756500..18756832, 18756927..18756997,18757132..18757224,18757320..18757415, 18757725..18757826,18757935..18758172)) /locus_tag="TCM_023810" /note="paralog of Thecc1EG014737t1" /codon_start=1 /product="Serine carboxypeptidase 45" /protein_id="EOY08723.1" /db_xref="Phytozome:POPTR_0006s03480.1" /db_xref="TAIR:AT1G28110.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H8S8" /translation="MKSGKWIAFVTLVHACLTVVESLPKADKIVALPGQPRANFQQFS GYLTVDEKQKRALFYYFVEAETMPASKPLVLWLNGGPGCSSIGAGALTEHGPFKPNGE TMEKNKYSWNKEANMLYLESPAGVGFSYSANNSFYANLNDEVAARDNLVFLERWFVKF PEYKNRDFYITGESYAGHYVPQLAQLIIHSNLKLNLKGIAIGNPLLEFATDMNSVDQY YWSHGLISDSAYELLTSFCNSSRLMREVIRRSISSDCISVYSEVSTELTKSIDQYDVI ADVCLSSGQSPMAILSHSLLSGPQHSSQADGLSQQQVSVKEDPCIQDKTTKYLNRKDV QKALHAQLVGTTSWNLCNKFVQYMDNLETPTIHIVGSIVKSGIPVMVYSGDQDSVIPF TGTRTLVYKLAKALGLNTTVPYRPWFEGKQVGGWTQVYGDILSFATIRGASHTAPASQ PERSLALFKAVLAGKPLPEA" mobile_element 18762934..18765965 /note="source:INTACT504_F7_scaffold_1-int 6946 9971" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 18767100..18782139 /locus_tag="TCM_023811" /note="dbxref CacaoGD:Thecc1EG023811" mRNA join(18767100..18767391,18780660..18780796, 18781859..18782139) /locus_tag="TCM_023811" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS join(18767378..18767391,18780660..18780796, 18781859..18781917) /locus_tag="TCM_023811" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08724.1" /translation="MRKKRMAFLLSEGNFSLVALFSLQRNSFSLQRETLGFENLHQNW FSLHRECSLARAYLCTKVTLNRNDS" mobile_element 18767653..18770642 /note="source:CACAO_M_S_E100714_F7_scaffold_9 1 2993" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18771138..18773912) /note="source:CACAO_M_E50636_F369_scaffold_7 11 2741" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18771913..18781853 /note="source:CACAO_M_S_E18399_F231_scaffold_3 772 10562" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(18782141..18785955) /locus_tag="TCM_023814" /note="dbxref CacaoGD:Thecc1EG023814" mRNA complement(join(18782141..18783025,18785807..18785955)) /locus_tag="TCM_023814" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.10 coverage" CDS complement(join(18782757..18783025,18785807..18785858)) /locus_tag="TCM_023814" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08725.1" /translation="MPSHYHKPPIQTIYQNTRGRGLPKGTMKKEREKMMERPTERAKR DEREKKIRKKRKVTASYLKEKKEREKSVLREKMKPAKLRRKERRKEKEMKEKKEREEA VGCE" mobile_element complement(18784149..18786008) /note="source:CACAO_M_E22761_F143_scaffold_3 1094 2953" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18785943..18786037 /note="source:CACAO_M_S_E101707_F15_scaffold_9 13246 13325" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18786028..18786511) /note="source:CACAO_M_S_E4911_F76_scaffold_1 12758 13241" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18787050..18788055 /note="source:CACAO_M_E70891_F369_scaffold_10 10339 11345" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18795316..18796595 /note="source:CACAO_M_E70891_F369_scaffold_10 10323 11603" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18796696..18797247 /note="source:CACAO_M_E33804_F134_scaffold_4 6238 6789" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18797248..18798348) /note="source:CACAO_M_E22761_F143_scaffold_3 1 1101" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18801246..18802255) /note="source:CACAO_M_S_E7818_F60_scaffold_2 6093 7114" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18802259..18803367 /note="source:INTACT1218F_F372_scaffold_6-int 7242 8329" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18802890..18805309) /note="source:INTACT1295F_F378_scaffold_7-int 1 2447" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18805714..18806498) /note="source:CACAO_M_S_E7818_F60_scaffold_2 5125 5903" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18807857..18810367 /note="source:CACAO_M_E23512_F28_scaffold_4 2527 5034" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18810409..18811551) /note="source:CACAO_M_E4753_F17_scaffold_2 11715 12868" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18811474..18811607 /note="source:CACAO_M_E72867_F9_scaffold_10 5025 5157" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18813071..18813530) /note="source:INTACT695_F301_scaffold_5-int 773 1216" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18813531..18813839) /note="source:CACAO_M_E58819_F24_scaffold_9 773 1081" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18813830..18814381 /note="source:INTACT1373F_F385_scaffold_8-int 21817 22367" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18814671..18815375) /note="source:CACAO_M_S_E7818_F60_scaffold_2 19285 19885" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18815348..18816093) /note="source:CACAO_M_S_E7818_F60_scaffold_2 5125 5900" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18820892..18823439 /note="source:CACAO_LINE_E_216_scaffold_8 5224 7771" /mobile_element_type="retrotransposon:LINE/L1" mobile_element complement(18825149..18825348) /note="source:INTACT265_F12_scaffold_7-int 79 269" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18826472..18826851) /note="source:INTACT591_F264_scaffold_1-int 1138 1516" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18827603..18828466) /note="source:CACAO_M_E5148_F79_scaffold_2 1914 2773" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18828456..18830227 /note="source:CACAO_M_E34317_F79_scaffold_4 1009 2764" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18835542..18835649 /note="source:CACAO_M_S_E99574_F14_scaffold_9 11058 11159" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 18836789..18837497 /locus_tag="TCM_023819" /note="dbxref CacaoGD:Thecc1EG023819" mRNA 18836789..18837497 /locus_tag="TCM_023819" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.68 coverage" CDS 18837053..18837274 /locus_tag="TCM_023819" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08726.1" /translation="MDQTMLIRALGCPYTLEPLIMKCGMLSQKDHIFPPHLALSLVRD CLNQDLNVLKLKSKRSKQILKPSTPFIVH" mobile_element 18838875..18839883 /note="source:CACAO_M_E1841_F5_scaffold_1 21987 22974" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18840515..18841283) /note="source:INTACT563_F255_scaffold_10-int 16531 17299" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18841375..18842312) /note="source:INTACT563_F255_scaffold_10-int 4735 5667" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18841848..18842404 /note="source:CACAO_M_E11662_F12_scaffold_2 13467 14036" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18843026..18845963 /note="source:CACAO_M_E42586_F54_scaffold_5 1 2938" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18845866..18845973) /note="source:INTACT215F_F14_scaffold_3-int 9570 9679" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(18846330..18861064) /locus_tag="TCM_023820" /note="dbxref CacaoGD:Thecc1EG023820" mRNA complement(join(18846330..18846947,18861056..18861064)) /locus_tag="TCM_023820" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013607t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(18846423..18846668) /locus_tag="TCM_023820" /note="paralog of Thecc1EG013607t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08727.1" /translation="MFEEKMKEAMARGYRPSKVLGVRDFLPSCGKGATLVIREECVRI QQAWFKDKMGKCQVVEEDSKEDSSMCSDQGDDIPKDI" mobile_element complement(18847156..18847257) /note="source:CACAO_M_E47740_F12_scaffold_6 6623 6724" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18847351..18860379 /note="source:CACAO_M_E42589_F12_scaffold_5 1 13029" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18861081..18863514 /note="source:CACAO_M_S_E5046_F335_scaffold_1 18258 20782" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18863516..18866174 /note="source:CACAO_M_E42594_F369_scaffold_5 1 2659" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18866172..18866259) /note="source:CACAO_M_E1841_F5_scaffold_1 3101 3190" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18866175..18866273 /note="source:CACAO_M_S_E5046_F335_scaffold_1 20775 20864" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18866260..18866461 /note="source:CACAO_M_E1841_F5_scaffold_1 22024 22226" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18866455..18868090) /note="source:CACAO_M_E11662_F12_scaffold_2 6864 8506" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18868083..18869988) /note="source:CACAO_M_E11662_F12_scaffold_2 4773 6722" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18869982..18870652 /note="source:CACAO_M_E1841_F5_scaffold_1 22222 22884" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18870653..18870732) /note="source:CACAO_M_E73087_F12_scaffold_10 10571 10649" /mobile_element_type="retrotransposon:LTR/Gypsy" assembly_gap 18876209..18886208 /estimated_length=10000 /gap_type="between scaffolds" mobile_element 18886209..18886713 /note="source:INTACT215F_F14_scaffold_3-int 7133 7637" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18887086..18887747) /note="source:CACAO_M_E65323_F12_scaffold_9 8601 9238" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18887717..18887856 /note="source:CACAO_Mariner_E229_scaffold_9 158 320" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 18887846..18888633 /note="source:CACAO_M_E1841_F5_scaffold_1 15889 16663" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18888617..18888738 /note="source:INTACT280_F60_scaffold_5-int 10615 10739" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18888722..18889406 /note="source:CACAO_M_E1841_F5_scaffold_1 25802 26515" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18889576..18894533 /note="source:INTACT359_F73_scaffold_2-int 1 4965" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18895202..18898145 /note="source:CACAO_M_S_E64778_F143_scaffold_5 1 2944" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18901779..18901835 /note="source:INTACT19F_F94_scaffold_1-int 14770 14828" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18901836..18901927) /note="source:CACAO_M_E59093_F12_scaffold_9 16184 16271" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18902079..18904748 /note="source:CACAO_M_E42600_F369_scaffold_5 1 2670" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18905584..18905699 /note="source:INTACT24_F12_scaffold_12-int 12523 12634" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18905710..18905931 /note="source:INTACT319_F3_scaffold_1-int 1 219" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18905989..18906753 /note="source:CACAO_M_S_E15974_F3_scaffold_2 6706 7474" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18906750..18908086) /note="source:CACAO_M_S_E119615_F3_scaffold_9 16616 17972" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18908725..18909479) /note="source:CACAO_M_S_E119615_F3_scaffold_9 15864 16623" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18909473..18910746) /note="source:CACAO_M_S_E15974_F3_scaffold_2 6449 7729" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18910759..18911640) /note="source:INTACT319_F3_scaffold_1-int 8197 9008" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18911641..18914611 /note="source:CACAO_M_E42601_F143_scaffold_5 1 2971" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18914627..18916875) /note="source:CACAO_M_S_E15974_F3_scaffold_2 3293 5576" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18917138..18917467) /note="source:INTACT701_F305_scaffold_10-int 13187 13513" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18918240..18919013) /note="source:INTACT319_F3_scaffold_1-int 5138 5955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18919148..18919273) /note="source:INTACT701_F305_scaffold_10-int 372 496" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18919293..18922249 /note="source:CACAO_M_E42602_F143_scaffold_5 1 2957" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18922670..18923096) /note="source:INTACT674_F296_scaffold_6-int 2889 3319" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18923095..18926010) /note="source:INTACT674_F296_scaffold_6-int 3 2923" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18923440..18926020 /note="source:CACAO_M_E3499_F262_scaffold_1 178 2755" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18926021..18926191) /note="source:INTACT319_F3_scaffold_1-int 2722 2892" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18926192..18928073) /note="source:INTACT319_F3_scaffold_1-int 1 1899" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18929354..18929425 /note="source:CACAO_M_E58230_F143_scaffold_9 1678 1730" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 18929771..18932051 /locus_tag="TCM_023828" /note="dbxref CacaoGD:Thecc1EG023828" mRNA 18929771..18932051 /locus_tag="TCM_023828" /product="HXXXD-type acyl-transferase family protein, putative" /inference="alignment:exonerate-protein:2:frave:gene06715" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010738t1" /inference="similar to AA sequence:frave:gene06715" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4581t1" CDS 18930027..18931355 /locus_tag="TCM_023828" /note="dbxref frave:gene06715; paralog of Thecc1EG010738t1" /codon_start=1 /product="HXXXD-type acyl-transferase family protein, putative" /protein_id="EOY08728.1" /db_xref="TAIR:AT3G26040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HTD1" /translation="MEKMKVEVTSRKTIKPSIPTPHHLRTFNLSLLDQDVPAIHYGSV VFFYPSDNTARSSISQKSQSLKNSLSRILLHFYPLAGQVKDAVTIECNDQGACFIEAR TGCQLNDFLTHPDPGFLKELVPSTDPKAIRSTLACILLVQLTSFTCGGTAVAVCVSHK FADASSLCTFIQSWTAMSSREYGRVVVPKLVGASLLPPIHKLITSTPPPTTRNCATKR FVFHKSQIANLKAKVAATMGKQQRPANVEIVLAIVLRCASAASQSKYGSSRQSALLNV VNLRKRMVPPLPGNTIGNLIWTYPVLFQESDVQLHQIVAKMKDAFTNVCNDKLKTIKS KKGHTEVQESRKQIAQLLNGKLVDTNTYTCTNLCSYPLHEMDFGWGKPLWVTSPSNFK NLIVLLDSKWGDIEAWVTLDELEMATFERDQELLAVASSNPSALVSYSRM" mobile_element 18932428..18933026 /note="source:CACAO_M_E42606_F182_scaffold_5 1 599" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18933127..18933824 /note="source:CACAO_M_E42606_F182_scaffold_5 600 1297" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18933925..18934535 /note="source:CACAO_M_E42606_F182_scaffold_5 1298 1908" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18934636..18936504 /note="source:CACAO_M_E42606_F182_scaffold_5 1909 3777" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18936605..18937516 /note="source:CACAO_M_E42606_F182_scaffold_5 3778 4689" /mobile_element_type="retrotransposon:LTR/Copia" gene 18937729..18938188 /locus_tag="TCM_023829" /note="dbxref CacaoGD:Thecc1EG023829" mRNA 18937729..18938188 /locus_tag="TCM_023829" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031281t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS 18937857..18938087 /locus_tag="TCM_023829" /note="paralog of Thecc1EG031281t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08729.1" /translation="MALFSNFINIVELVDLPLSGGLFTWSDNRDDPTKCRLDRFLLSS KIVLQFPSLVQKVLPRSTSSHNPISLAVDHLN" gene 18938261..18944279 /locus_tag="TCM_023830" /note="dbxref CacaoGD:Thecc1EG023830" mRNA join(18938261..18938457,18940047..18940560, 18944225..18944279) /locus_tag="TCM_023830" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.63 coverage" CDS 18940063..18940329 /locus_tag="TCM_023830" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08730.1" /translation="MTPPAKAYQPSLLWRHITKPLNLTSKYHDLVTAGFGHSLRNIYT ICFWTNTWVGNSSLSIQFPRIFALAKDKKASIVDTGKWINNKWT" mobile_element 18942114..18942485 /note="source:INTACT1818F_F49_scaffold_11-int 20335 20721" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18943850..18943952 /note="source:CACAO_M_E36574_F4_scaffold_5 1071 1174" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18945435..18945953 /note="source:INTACT319_F3_scaffold_1-int 6353 6834" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18945966..18946051) /note="source:CACAO_M_S_E64023_F13_scaffold_5 16484 16568" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18946052..18953712 /note="source:CACAO_M_E65050_F7_scaffold_9 1 14920" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18953711..18955497 /note="source:INTACT1218F_F372_scaffold_6-int 6467 8341" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18954099..18957091) /note="source:CACAO_M_E42586_F54_scaffold_5 1 2938" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18957069..18957315) /note="source:INTACT410F_F357_scaffold_4-int 9765 9999" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18957092..18957132 /note="source:CACAO_M_E72142_F322_scaffold_10 2289 2327" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18957351..18957609 /note="source:CACAO_M_E52576_F245_scaffold_7 3321 3581" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18957906..18958146 /note="source:INTACT551_F248_scaffold_7-int 10821 11061" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18958862..18959026) /note="source:CACAO_M_E35176_F7_scaffold_5 9380 9545" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18959475..18959901 /note="source:CACAO_M_S_E6875_F7_scaffold_2 13986 14410" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18959819..18960014) /note="source:INTACT768_F7_scaffold_8-int 4223 4419" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18960010..18962557 /note="source:INTACT224_F176_scaffold_8-int 15981 17381" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18962517..18963115 /note="source:CACAO_M_E49559_F88_scaffold_7 8597 9171" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 18963378..18963662 /note="source:CACAO_M_S_E17777_F2_scaffold_3 3673 3968" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18963659..18963768 /note="source:CACAO_M_S_E17777_F2_scaffold_3 6881 6983" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18963852..18963917 /note="source:CACAO_M_S_E17777_F2_scaffold_3 6984 7048" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18965570..18966788 /note="source:CACAO_M_E5627_F4_scaffold_2 395 1658" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(18968888..18969526) /note="source:scaffold_5_CACTA_0601 8100 8729" /mobile_element_type="transposon:TIR/CACTA" mobile_element 18971087..18971195 /note="source:INTACT414F_F358_scaffold_4-int 1 109" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18971196..18973803) /note="source:CACAO_M_E3834_F51_scaffold_1 395 3025" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18973984..18974281 /note="source:CACAO_M_S_E4344_F7_scaffold_1 2563 2863" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18974033..18974280) /note="source:INTACT95_F143_scaffold_9-int 13976 14224" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18974277..18974914) /note="source:CACAO_M_E3834_F51_scaffold_1 1 638" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18974915..18975025 /note="source:INTACT904F_F49_scaffold_6-int 13945 14055" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18975014..18976318 /note="source:INTACT414F_F358_scaffold_4-int 8284 9243" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18976319..18977197) /note="source:CACAO_M_S_E14196_F7_scaffold_2 2289 2984" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18977198..18980502 /note="source:CACAO_M_E42627_F207_scaffold_5 1 3305" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18980503..18984124 /note="source:INTACT715_F7_scaffold_5-int 893 4518" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18983946..18984127) /note="source:CACAO_M_E35176_F7_scaffold_5 9194 9371" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18984128..18984869) /note="source:CACAO_M_E12903_F7_scaffold_3 2257 3011" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(18984895..18985241) /note="source:CACAO_M_E36274_F7_scaffold_5 1 346" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18985242..18985452 /note="source:INTACT414F_F358_scaffold_4-int 2109 2319" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18985453..18994877 /note="source:CACAO_M_E42630_F86_scaffold_5 1 9425" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 18994878..19000411 /note="source:INTACT414F_F358_scaffold_4-int 2315 7790" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19000400..19001672 /note="source:INTACT414F_F358_scaffold_4-int 8284 9580" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19001673..19001709) /note="source:CACAO_M_E3884_F22_scaffold_1 23614 23643" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19003316..19003374 /note="source:CACAO_M_E72142_F322_scaffold_10 738 798" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19003323..19003379) /note="source:CACAO_M_E5326_F22_scaffold_2 3420 3476" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19003356..19003408 /note="source:CACAO_M_E5627_F4_scaffold_2 16975 17027" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19003715..19004238) /note="source:CACAO_M_S_E7818_F60_scaffold_2 21002 21531" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19004651..19004728 /note="source:INTACT688_F14_scaffold_11-int 9016 9093" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19006309..19007721) /note="source:INTACT414_F210_scaffold_5-int 11211 12214" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19007808..19008205 /note="source:CACAO_M_E3884_F22_scaffold_1 12746 13131" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19009572..19009792) /note="source:CACAO_M_S_E119615_F3_scaffold_9 18789 19009" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19009850..19010107 /note="source:CACAO_M_S_E4413_F3_scaffold_1 17086 17341" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19010110..19013047) /note="source:CACAO_M_E22380_F279_scaffold_3 1 2923" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19013048..19014237 /note="source:CACAO_M_S_E4413_F3_scaffold_1 470 1668" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19014238..19029443 /note="source:CACAO_M_E42641_F14_scaffold_5 1 15206" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 19026941..19037142 /locus_tag="TCM_023835" /note="dbxref CacaoGD:Thecc1EG023835" mRNA join(19026941..19026960,19029436..19029998, 19030414..19032031,19033792..19034083,19035834..19037142) /locus_tag="TCM_023835" /product="DNA/RNA helicase protein" /inference="alignment:exonerate-protein:2:frave:gene10885" /inference="similar to AA sequence:frave:gene10885" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc15t1" mobile_element 19029444..19029501 /note="source:CACAO_M_S_E4413_F3_scaffold_1 1664 1721" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(19029994..19029998,19030414..19032031, 19033792..19034083,19035834..19036639) /locus_tag="TCM_023835" /note="dbxref frave:gene10885" /codon_start=1 /product="DNA/RNA helicase protein" /protein_id="EOY08731.1" /db_xref="TAIR:AT5G05130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HQN9" /translation="MCRTNVLERKRRKPRLSIAIQKVISHCLSQVQNPKPPVPMEESA DPISLFLSLDEWPEDQESSSQPSSDSFLLGFVFANIVGLQYYRGKISGREMVGLVREP LNPYDQNAIKVLNTRTLQVGHIERSVAAVLSPLIDSHLISVEGIVPNSRSGSNKFKIP CQIHIFATLEAFSTVKSAISRGGLELISQSDVSFTLSEAAVVKGSKGGGEFKSVDKVF KLVDENVRKKATMETVEPSHEVIKSQLLLHQKEGLGWLLHRENSGELPPFWEEKSREF VNVLTNYQTDKRPEPLRGGIFADDMGLGKTLTLLSLIAFDKFSSFVPCSGDAGIEEIV EEDVKKGKRGRVSGKGTGTRKRRKTEDTKLARNPKGKSVNTVDECVSVLGQRTTLVVC PPSVFSSWITQLEEHTNPGKLKVYMYYGERTKQVEELKKYDIVLTTYSTLATEESWLD SPMKRMEWWRVILDEAHVIKNANAQQSKAVTSLKATCRWVVTGTPIQNGSLDLFSLMA FLRFEPFSIKSYWRSLVQRPLAQGNKNGLSRLQTLMASISLRRTKGNALIGLPPKTLQ TCYVELSVEEREVYDQIEGRAKSVIQEFINDGTLVRNYSTVLGILLRLRQICTNLALL PPDLRAMFPSSNIEDVSNNPELLKKMVAMLQDGEDLDCPVCISPPNDVIITCCAHIFC RPCIIKTLQRMKPYCPLCRHPLSQSDLFSAPSESSDADHTEISSRNTTSSKLSALLTL LQESQDQNPTKKSVVFSQFRTMLLLLEKPLKAAGFKILRLDGSMNAKRRAQVIENFQV PEADGPTVLLASLKASGAGINLTAASRVYLLEPWWNPAVEEQAMDRVHRIGQKEDVTI VRLIARNSIEERVLELQERKKKLATEAFRRKGPKDREEVTVDDLRTLMSL" mobile_element complement(19033069..19033131) /note="source:CACAO_M_E5326_F22_scaffold_2 3427 3489" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19037906..19039363) /note="source:INTACT105_F2_scaffold_2-int 14149 15581" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19040914..19056196 /note="source:CACAO_M_S_E64832_F14_scaffold_5 1 15283" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19056138..19056208 /note="source:INTACT638_F90_scaffold_1-int 1160 1230" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19058977..19059348) /note="source:CACAO_Mariner_E229_scaffold_9 11726 12081" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(19060256..19062322) /note="source:CACAO_M_E52239_F256_scaffold_7 19813 21861" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19062324..19064287 /note="source:scaffold_5_CACTA_0596 1 1824" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19064388..19069624 /note="source:scaffold_5_CACTA_0596 1825 7061" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19069725..19080103 /note="source:scaffold_5_CACTA_0596 7062 17440" /mobile_element_type="transposon:TIR/CACTA" gene 19082971..19087042 /locus_tag="TCM_023839" /note="dbxref CacaoGD:Thecc1EG023839" mRNA join(19082971..19083207,19084365..19084696, 19086124..19086183,19086494..19087042) /locus_tag="TCM_023839" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.19 coverage" CDS join(19083082..19083207,19084365..19084696, 19086124..19086183,19086494..19086932) /locus_tag="TCM_023839" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08732.1" /translation="MDIIAAIFGERHSIQRPLMFLVTNYPYWKKRMEMFIQSMDLEDT IKKGENIKGENDNFAIKVVKASKGSFDSSSLSLADLYLFKMAFFFSISFLPCHFHTST PFSLDSHAIEEKNRENQLRKERKERWKAWVVSDSRVIEETSSGSQDSRNIMFSELKVT DPRTRCSSLSIGREEDEDITLLTKKRSKFMRRNYKGRRPPKRGMAKGEHSKGHLICYE CRKSEHIKYECPNKKSTSKKFKKKAMVATWSDSDDSQDEEEAVNLDFMALEDFKVCST YYNSRSCALDGNSYSFDELQDAHDDLVFEFEEKTLKYKNIIS" mobile_element complement(19083823..19084569) /note="source:scaffold_2_CACTA_0262 7806 8555" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19084827..19084901) /note="source:scaffold_5_CACTA_0596 3569 3643" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19085499..19086019 /note="source:CACAO_M_E58601_F7_scaffold_9 9619 10118" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19085993..19086478) /note="source:scaffold_2_CACTA_0262 5420 5950" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19092064..19095059) /note="source:CACAO_M_E22175_F54_scaffold_3 1 2923" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19095649..19095741) /note="source:CACAO_M_E48538_F49_scaffold_6 601 689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19096356..19096500 /note="source:CACAO_M_E13172_F96_scaffold_3 2059 2209" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19096501..19099558 /note="source:CACAO_M_E33018_F264_scaffold_4 1 3041" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19099756..19101364) /note="source:CACAO_M_E36378_F335_scaffold_5 1028 2648" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19101365..19104368 /note="source:CACAO_M_S_E64856_F7_scaffold_5 1 3004" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19104370..19110439) /note="source:scaffold_2_CACTA_0259 380 6454" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19110526..19110604) /note="source:CACAO_M_E10036_F96_scaffold_2 1994 2069" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19111309..19111711 /note="source:scaffold_5_CACTA_0596 403 795" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19113196..19115327) /note="source:CACAO_M_E36378_F335_scaffold_5 50 2246" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19115280..19115356 /note="source:CACAO_M_E3264_F322_scaffold_1 2714 2787" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19116437..19116960 /note="source:CACAO_M_E33018_F264_scaffold_4 1002 1547" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19121054..19123628) /note="source:CACAO_M_E58715_F13_scaffold_9 3564 6062" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19123789..19124948) /note="source:INTACT407F_F356_scaffold_4-int 14376 15552" /mobile_element_type="retrotransposon:LTR/Copia" gene 19127176..19127746 /locus_tag="TCM_023842" /note="dbxref CacaoGD:Thecc1EG023842" mRNA 19127176..19127746 /locus_tag="TCM_023842" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040189t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.79 coverage" CDS 19127196..19127396 /locus_tag="TCM_023842" /note="paralog of Thecc1EG040189t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08733.1" /translation="MRTRAKIKNICEYVTFISQIEPKNIDEALDDDYWMLAMQEELNR FERCQVWQLVPMPNDYQIVGTN" mobile_element 19129659..19132530 /note="source:CACAO_M_E42672_F15_scaffold_5 1 2827" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19132973..19142980 /note="source:INTACT766_F325_scaffold_5-int 1 10008" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19144338..19144448 /note="source:CACAO_M_S_E85177_F5_scaffold_7 22195 22336" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19144349..19144489) /note="source:INTACT12_F107_scaffold_9-int 1745 1873" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19146008..19148515 /note="source:CACAO_M_S_E5046_F335_scaffold_1 18259 20864" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19154220..19154927 /note="source:CACAO_M_E58715_F13_scaffold_9 3565 4269" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19154935..19156540) /note="source:INTACT39F_F22_scaffold_1-int 927 3568" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19157097..19167134 /note="source:CACAO_M_S_E65068_F306_scaffold_5 1 12763" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19168807..19168853 /note="source:CACAO_M_E58819_F24_scaffold_9 15347 15393" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19168815..19168858) /note="source:scaffold_3_CACTA_0382 1859 1902" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19168859..19168871) /note="source:CACAO_M_S_E4863_F51_scaffold_1 5657 5714" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19169606..19171156) /note="source:INTACT39F_F22_scaffold_1-int 377 1882" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19170763..19171929 /note="source:INTACT460_F49_scaffold_8-int 1133 2137" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19171244..19176379 /note="source:scaffold_1_CACTA_0024 6075 11225" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19175946..19176431) /note="source:INTACT189_F49_scaffold_5-int 2681 3149" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19176426..19178859) /note="source:INTACT414_F210_scaffold_5-int 377 2830" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19178475..19179329 /note="source:INTACT711_F307_scaffold_9-int 11353 12222" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19179531..19182479 /note="source:CACAO_M_S_E122136_F76_scaffold_10 1327 4277" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19184934..19187471) /note="source:INTACT118_F5_scaffold_9-int 9842 12393" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19185971..19187730 /note="source:CACAO_M_E44310_F87_scaffold_6 954 2732" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 19189050..19193264 /locus_tag="TCM_023846" /note="dbxref CacaoGD:Thecc1EG023846" mRNA join(19189050..19190296,19190397..19190465, 19190603..19190685,19191501..19191553,19191645..19191799, 19191934..19191961,19192080..19192393,19192468..19192558, 19192800..19193264) /locus_tag="TCM_023846" /product="Transcription elongation factor family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s03310.1" /inference="similar to AA sequence:ricco:30180.m001030" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02173t00001; inference alignment:Newbler:10:TSA:cgbaL_g02173t00001" mRNA join(19189050..19189382,19189920..19190296, 19190397..19190465,19190603..19190685,19191501..19191553, 19191645..19191799,19191934..19191961,19192080..19192393, 19192468..19192558,19192800..19193264) /locus_tag="TCM_023846" /product="Transcription elongation factor family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s03310.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s03310.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02173t00002; inference alignment:Newbler:10:TSA:cgbaL_g02173t00001" CDS join(19189820..19190296,19190397..19190465, 19190603..19190685,19191501..19191553,19191645..19191799, 19191934..19191961,19192080..19192393,19192468..19192558, 19192800..19192924) /locus_tag="TCM_023846" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30180.m001030" /codon_start=1 /product="Transcription elongation factor family protein, putative isoform 1" /protein_id="EOY08734.1" /db_xref="TAIR:AT5G05140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HQP1" /translation="MAMKGVPLEQWRDYFRTANSDIFDIIDHAITVAALDCPKEFRLR RDQIAEKLFTCKFTRCSGCDRVKLVVPEYGADNGRGCRARFKGEADEEDGCEFFEAGG SKESKANSSRDDPLINQIASNYSYGEAEALTDEIEEESMMVGEVYRIKEILHNSQDES DSVLFDSLRRLQLMALTVDILKATGIGKAVNRVRKHSSKQIRHLAQTLIDGWKELVDE WVNAAKAIAEGTPESVNPSVLDNEEEKEEEEEEEEEEGLPSPPLDVGAFFATQPTSME LSQFFDGMDDDGNPRNSGEFIKNLDNRRKPSQENQNVSKRKQQTSSEAVLLTKDDKSR QMKRQEPVDNPNNKPQRKNMGSGRPPKHDMEQKANFESKLLLKSDKMAVPKKPLSSQQ DKFKTSDDIAVQRKLEATKRKLQERYQQAENAKRKRTIQVMELHDLPKQGSVPKNAYM KPGNHNRQWVNGRR" CDS join(19190240..19190296,19190397..19190465, 19190603..19190685,19191501..19191553,19191645..19191799, 19191934..19191961,19192080..19192393,19192468..19192558, 19192800..19192924) /locus_tag="TCM_023846" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Transcription elongation factor family protein, putative isoform 2" /protein_id="EOY08735.1" /db_xref="Phytozome:POPTR_0016s03310.2" /db_xref="TAIR:AT5G05140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H8S4" /translation="MMVGEVYRIKEILHNSQDESDSVLFDSLRRLQLMALTVDILKAT GIGKAVNRVRKHSSKQIRHLAQTLIDGWKELVDEWVNAAKAIAEGTPESVNPSVLDNE EEKEEEEEEEEEEGLPSPPLDVGAFFATQPTSMELSQFFDGMDDDGNPRNSGEFIKNL DNRRKPSQENQNVSKRKQQTSSEAVLLTKDDKSRQMKRQEPVDNPNNKPQRKNMGSGR PPKHDMEQKANFESKLLLKSDKMAVPKKPLSSQQDKFKTSDDIAVQRKLEATKRKLQE RYQQAENAKRKRTIQVMELHDLPKQGSVPKNAYMKPGNHNRQWVNGRR" mobile_element complement(19199949..19200504) /note="source:scaffold_8_CACTA_0857 8328 8971" /mobile_element_type="transposon:TIR/CACTA" gene complement(19200870..19204667) /locus_tag="TCM_023848" /note="dbxref CacaoGD:Thecc1EG023848" mRNA complement(join(19200870..19201331,19202457..19202605, 19204370..19204667)) /locus_tag="TCM_023848" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046084t1" /note="quality class is medium-utrpoor, express is medium, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.43 coverage" CDS complement(join(19201135..19201331,19202457..19202493)) /locus_tag="TCM_023848" /note="paralog of Thecc1EG046084t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08736.1" /translation="MLVYSCVKFKCLVDLEVLKDDEQRFYSSMVIAGSMMNLVIECFL MMTCFETCSAMELPVLMSWIRLVKMMGLGKRNG" mobile_element complement(19209898..19210031) /note="source:CACAO_M_E70891_F369_scaffold_10 12297 12428" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19210459..19213408 /note="source:CACAO_M_E69760_F9_scaffold_9 6707 9649" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19213408..19215209 /note="source:INTACT224_F176_scaffold_8-int 17232 19037" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19215228..19215364 /note="source:INTACT224_F176_scaffold_8-int 2475 2611" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19215624..19215976 /note="source:INTACT132_F12_scaffold_9-int 8903 9255" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19216506..19218710 /note="source:CACAO_M_E3891_F15_scaffold_1 881 3107" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19219456..19229867 /note="source:CACAO_M_E42691_F9_scaffold_5 1 10412" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19230827..19233951 /note="source:CACAO_M_E42693_F115_scaffold_5 1 3125" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19237437..19237467) /note="source:INTACT1308F_F98_scaffold_7-int 9584 9614" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19237441..19239594) /note="source:CACAO_M_E13220_F12_scaffold_3 9801 12000" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19245492..19245664) /note="source:CACAO_M_E35511_F5_scaffold_5 432 617" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19247010..19248743) /note="source:CACAO_M_S_E52113_F15_scaffold_5 1216 2948" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19248720..19249307) /note="source:CACAO_M_E85507_F96_scaffold_11 1572 2536" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19250147..19250779 /note="source:CACAO_M_E43271_F322_scaffold_5 1414 2045" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19251190..19251475) /note="source:CACAO_M_E69217_F98_scaffold_9 7124 7405" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19251461..19252685) /note="source:CACAO_M_E9677_F7_scaffold_2 6464 7690" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19253900..19254027) /note="source:CACAO_M_E5546_F369_scaffold_2 1248 1365" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19254444..19256139 /note="source:CACAO_M_S_E64889_F3_scaffold_5 1 1696" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19257194..19257397 /note="source:INTACT90_F13_scaffold_4-int 13042 13246" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19257507..19257548 /note="source:CACAO_M_S_E64023_F13_scaffold_5 1079 1121" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19269902..19269985 /note="source:CACAO_M_E3884_F22_scaffold_1 13083 13172" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19271159..19271883 /note="source:CACAO_M_E9677_F7_scaffold_2 9865 10590" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19271884..19274585 /note="source:CACAO_M_E42701_F369_scaffold_5 1 2702" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19274586..19276854 /note="source:CACAO_M_E14672_F7_scaffold_3 724 2994" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19277275..19278825 /note="source:CACAO_LINE_E_139_scaffold_5 1 1551" /mobile_element_type="retrotransposon:LINE/L1" mobile_element complement(19283281..19283542) /note="source:INTACT224_F176_scaffold_8-int 2312 2569" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19284310..19285039) /note="source:CACAO_M_S_E7994_F98_scaffold_2 2065 2795" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19285363..19291283) /note="source:CACAO_M_E36454_F98_scaffold_5 4028 9983" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19291284..19294060 /note="source:CACAO_M_E42708_F322_scaffold_5 1 2777" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19294061..19298103) /note="source:CACAO_M_E36454_F98_scaffold_5 1 4032" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19294061..19294128) /note="source:CACAO_on_S_E58_scaffold_2 1878 1939" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(19298484..19300135) /note="source:CACAO_M_E52239_F256_scaffold_7 20004 21708" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19300113..19302395 /note="source:CACAO_M_S_E14932_F233_scaffold_2 2489 4323" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19302395..19302745 /note="source:CACAO_M_E58819_F24_scaffold_9 3007 3359" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19302575..19302852) /note="source:INTACT624_F277_scaffold_2-int 11290 11571" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19302852..19304175 /note="source:CACAO_M_E58819_F24_scaffold_9 14113 15399" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19304132..19304182) /note="source:CACAO_M_E5899_F5_scaffold_2 20740 20790" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19304309..19305184 /note="source:CACAO_M_E58819_F24_scaffold_9 15385 16275" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19305178..19305246) /note="source:CACAO_M_S_E5046_F335_scaffold_1 16530 16598" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19305235..19308554 /note="source:CACAO_M_S_E14932_F233_scaffold_2 7572 10935" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19308381..19310050) /note="source:CACAO_M_E52239_F256_scaffold_7 20004 21714" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19310020..19310715 /note="source:CACAO_M_E5899_F5_scaffold_2 22110 22598" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19310716..19313371 /note="source:scaffold_6_CACTA_0702 8982 11629" /mobile_element_type="transposon:TIR/CACTA" gene complement(19313808..19314732) /locus_tag="TCM_023856" /note="dbxref CacaoGD:Thecc1EG023856" mRNA complement(join(19313808..19314214,19314376..19314732)) /locus_tag="TCM_023856" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018329t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.41 coverage" CDS complement(join(19314001..19314214,19314376..19314614)) /locus_tag="TCM_023856" /note="paralog of Thecc1EG018329t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08737.1" /translation="MFNERTLIVEESIHVLFDDANSSLRKENVVDDEIDILQEKVEEL ELDNENKEDEDQAQELDEQPNDTTKEKEPTHPRGMGRVKPTVGTKWVFKNKMDGDGDI IRNKARLVAKGYSQKEGIDFDETYALVVGLDAIRMLLSFACYINFKLF" mobile_element 19314870..19316865 /note="source:scaffold_6_CACTA_0702 8212 10195" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19316920..19317769 /note="source:CACAO_M_S_E5046_F335_scaffold_1 16337 17178" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19322098..19325194) /note="source:INTACT169_F14_scaffold_2-int 5842 8968" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19327772..19328756) /note="source:CACAO_M_S_E83372_F14_scaffold_6 3580 4606" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19330258..19330408 /note="source:INTACT336_F12_scaffold_2-int 9968 10113" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19332746..19333151 /note="source:INTACT649F_F368_scaffold_5-int 1 362" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19333353..19333471) /note="source:scaffold_6_CACTA_0702 55 175" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19334654..19334722 /note="source:CACAO_M_E59463_F12_scaffold_9 1033 1103" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19334793..19334988 /note="source:INTACT649F_F368_scaffold_5-int 14659 14852" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19335214..19335280 /note="source:INTACT649F_F368_scaffold_5-int 770 842" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19335283..19346270) /note="source:CACAO_M_E9901_F33_scaffold_2 1 10975" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19346271..19346959 /note="source:INTACT649F_F368_scaffold_5-int 874 1574" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19348396..19349501) /note="source:CACAO_M_E58819_F24_scaffold_9 1 1083" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19349809..19350250 /note="source:INTACT649F_F368_scaffold_5-int 1576 2022" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(19350082..19351269) /locus_tag="TCM_023859" /note="dbxref CacaoGD:Thecc1EG023859" mRNA complement(join(19350082..19350422,19350550..19350805, 19350960..19351269)) /locus_tag="TCM_023859" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(join(19350241..19350422,19350550..19350805, 19350960..19351148)) /locus_tag="TCM_023859" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08738.1" /translation="MVDNFYDLVVHHKCEVLTIRNVDLDRYLYIELVNDIFEGMVDDS TFGIGMSVLINVQHPKSNEIGNVHVVDDTVTVDDTIDVNVGVNVVAKVKVNVDVNLNA DRMVGSGLGTCRLRVGERSSSGRGSIDIDSGRSSGRVEKGSLVDCLCNSQGNFEDNVE EDNDVDRLSNIGSDGDEGNKASSGSDREGRTIDRSMRSILTHLMSLGR" gene complement(19356122..19359699) /locus_tag="TCM_023860" /note="dbxref CacaoGD:Thecc1EG023860" mRNA complement(join(19356122..19356379,19356479..19356539, 19359574..19359699)) /locus_tag="TCM_023860" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4617t2" CDS complement(join(19356284..19356379,19356479..19356539, 19359574..19359650)) /locus_tag="TCM_023860" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08739.1" /translation="MIFLQRYSHQLFTLQSWSAWVFLLQSCIWGQYQLGREGIPWIIM AELEASSVRLGSSTTTFDIIFKWSSAFLEMYHS" gene complement(19359982..19362455) /locus_tag="TCM_023861" /note="dbxref CacaoGD:Thecc1EG023861" mRNA complement(join(19359982..19360617,19360730..19362455)) /locus_tag="TCM_023861" /product="Major facilitator superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30089.m000994.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004993t1" /inference="similar to AA sequence:ricco:30089.m000994" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4629t1" CDS complement(join(19360371..19360617,19360730..19361889)) /locus_tag="TCM_023861" /note="dbxref ricco:30089.m000994; paralog of Thecc1EG004993t1" /codon_start=1 /product="Major facilitator superfamily protein" /protein_id="EOY08740.1" /db_xref="TAIR:AT1G18010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LDH5" /translation="MGFQGGVADEESGTELSTKSKFRYNSPLVQVSLIGLVCFCCPGM FNALSGMGGGGQVDPTAANNANTALYTSFAVFGILGGGIYNVLGPHLTLAAGCSTYVL YAGSFLYYNHHKHQAFAIAAGGLLGVGAGLLWAGEGAIMTSYPPPNRKGTYISLFWSI FNMGGVIGGLIPFILNYHRNEATSVNDATYIGFMCFMSAGTLLSFAILPPNKVVRDDG TRCTNVKYSSVSTEAVEILKLFFNWKMLLIVPAAWASNFFYSYQFNNVNGLLFNLRTR GLNNVFYWGAQMLGSIGIGYILDFSFQSRRMRGFVGIGVVALLGSAIWGGGLANQLPY SHDHPPTRLDFKESAFAGPFVLYFSYGLLDAMFQSMVYWIIGALADDSQTLSRYSGFY KGVQSAGAAVAWQVDTHKVPLLSQLIVNWSLTTVSYPLLVLLVMLAVKDDKKTEEETP KEATVPSSNKDINTANST" gene complement(19362366..19368015) /locus_tag="TCM_023862" /note="dbxref CacaoGD:Thecc1EG023862" mRNA complement(join(19362366..19362471,19362672..19362760, 19362837..19362969,19363097..19363464,19367849..19368015)) /locus_tag="TCM_023862" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.20 coverage" CDS complement(join(19362471,19362672..19362760, 19362837..19362969,19363097..19363173)) /locus_tag="TCM_023862" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08741.1" /translation="MSIRPNQSGRIWPAGALSSIGKERQISRHMFVSPCALMASCLIL ATLFRSSQNKGAIYVFILVSAIERKPSRLAGLLINSEDQKMTIYLNSGRSRQPAS" mobile_element 19364843..19365915 /note="source:CACAO_M_E47740_F12_scaffold_6 14694 15769" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19368545..19370058) /note="source:CACAO_M_E71671_F17_scaffold_10 1 1531" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(19369850..19376069) /locus_tag="TCM_023863" /note="dbxref CacaoGD:Thecc1EG023863" mRNA complement(join(19369850..19370063,19371918..19372851, 19376012..19376069)) /locus_tag="TCM_023863" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.20 coverage" CDS complement(19371970..19372344) /locus_tag="TCM_023863" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08742.1" /translation="MVSVGITYKRPKLSKETPHGNKGVGPEFVNESKQVVLKPCKRGL GREYEIHDCSQAMHQIEHDMGYTNLDKDKHGQDTIFDSDLRLRYLAIRKEAEEIWELT KKLGLNFKERKDEVIQRNIALE" mobile_element 19373768..19374895 /note="source:scaffold_2_CACTA_0261 1776 2877" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19375149..19375284) /note="source:CACAO_M_S_E85473_F233_scaffold_7 8351 8484" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19375285..19375303 /note="source:scaffold_4_CACTA_0493 4305 4463" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19376734..19379868 /note="source:CACAO_M_S_E64916_F7_scaffold_5 1 3135" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19382326..19382837 /note="source:INTACT506_F233_scaffold_3-int 7270 7782" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19382838..19385595 /note="source:CACAO_M_E42723_F15_scaffold_5 1 2758" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19386463..19390930 /note="source:INTACT506_F233_scaffold_3-int 1824 10067" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19390931..19390984 /note="source:CACAO_M_S_E85473_F233_scaffold_7 5961 6014" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19390978..19393443 /note="source:INTACT506_F233_scaffold_3-int 6103 8590" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19394662..19397656 /note="source:INTACT504_F7_scaffold_1-int 6986 9971" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(19398279..19402902) /locus_tag="TCM_023865" /note="dbxref CacaoGD:Thecc1EG023865" mRNA complement(join(19398279..19399615,19400474..19400743, 19400877..19401277,19402846..19402902)) /locus_tag="TCM_023865" /product="Beta-6 tubulin" /inference="alignment:exonerate- protein:2:ricco:29785.m000971" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040995t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s03300.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06164t00001" CDS complement(join(19398942..19399615,19400474..19400743, 19400877..19401270)) /locus_tag="TCM_023865" /note="paralog of Thecc1EG040995t1" /codon_start=1 /product="Beta-6 tubulin" /protein_id="EOY08743.1" /db_xref="Phytozome:POPTR_0016s03300.1" /db_xref="TAIR:AT5G12250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q01GL4" /translation="MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGSSDLQL ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWA KGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLT TPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSR GSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQ NKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRK AFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGEYEEEEEEEEE" gene complement(19401253..19403016) /locus_tag="TCM_023866" /note="dbxref CacaoGD:Thecc1EG023866" mRNA complement(join(19401253..19401277,19402345..19402399, 19402846..>19402991)) /locus_tag="TCM_023866" /product="Uncharacterized protein isoform 2" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is none, intron is strong, protein is partial5; similar to RNA sequence, EST 0.61 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc112t8; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc112t8; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc6964t1" mRNA complement(join(<19401254..19401277,19402846..>19402991)) /locus_tag="TCM_023866" /product="Uncharacterized protein isoform 3" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is none, intron is medium, protein is partial; similar to RNA sequence, EST 0.48 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc112t13; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc116t8_C2; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc6964t1" CDS complement(join(<19401254..19401277,19402846..>19402989)) /locus_tag="TCM_023866" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY08745.1" /translation="KEGTTAHPTISLLPLHFLYITLSSFPFLSSLFSQKFLQSLPNSV IPTQGKNERDPS" CDS complement(join(19401267..19401277,19402345..19402399, 19402846..>19402989)) /locus_tag="TCM_023866" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY08744.1" /translation="KEGTTAHPTISLLPLHFLYITLSSFPFLSSLFSQKFLQSLPNSV IPTQKIKQIMEISIEKEWTDRMREK" mobile_element complement(19403408..19404586) /note="source:scaffold_5_CACTA_0591 15443 16627" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19404555..19405048) /note="source:scaffold_5_CACTA_0591 9534 10080" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19405872..19408831 /note="source:CACAO_M_E42726_F7_scaffold_5 1 2960" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19422271..19422384) /note="source:CACAO_M_S_E119615_F3_scaffold_9 1009 1119" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19424919..19425036 /note="source:CACAO_M_E84368_F4_scaffold_10 828 942" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19426824..19427609) /note="source:scaffold_3_CACTA_0384 9560 10337" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19427754..19427890) /note="source:scaffold_3_CACTA_0384 9560 9692" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19427886..19428370 /note="source:CACAO_M_E24592_F195_scaffold_4 20515 20977" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19428058..19429287) /note="source:INTACT312_F195_scaffold_2-int 1817 3088" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19430832..19430937 /note="source:scaffold_1_CACTA_0016 6331 6434" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19433765..19434269 /note="source:scaffold_5_CACTA_0596 16456 16948" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19438075..19440887 /note="source:CACAO_M_E42728_F244_scaffold_5 1 2781" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19440888..19442848) /note="source:INTACT261_F189_scaffold_2-int 4038 5996" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19443729..19446628 /note="source:CACAO_Mutator_E592_scaffold_3 4039 7525" /mobile_element_type="transposon:TIR/Mutator" mobile_element 19446629..19447324 /note="source:CACAO_PIF_E62_scaffold_2 9963 10658" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 19447325..19447774 /note="source:CACAO_Mutator_E592_scaffold_3 7526 8068" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(19447775..19450402) /note="source:scaffold_1_CACTA_0016 2874 5501" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19450404..19452773 /note="source:CACAO_Mutator_E592_scaffold_3 8066 10567" /mobile_element_type="transposon:TIR/Mutator" mobile_element 19452780..19452806 /note="source:CACAO_PIF_E62_scaffold_2 13763 13789" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 19452804..19452933 /note="source:CACAO_PIF_E62_scaffold_2 13729 13858" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 19452938..19455627 /note="source:CACAO_Mutator_E1320_scaffold_6 1 2682" /mobile_element_type="transposon:TIR/Mutator" mobile_element 19455623..19461231 /note="source:CACAO_Mutator_E1320_scaffold_6 2878 8546" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(19462985..19463032) /note="source:INTACT261_F189_scaffold_2-int 1431 1476" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19463002..19463045 /note="source:INTACT19F_F94_scaffold_1-int 14160 14200" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 19466252..19478957 /locus_tag="TCM_023871" /note="dbxref CacaoGD:Thecc1EG023871" mRNA join(19466252..19466783,19467708..19468006, 19468322..19468450,19469698..19469790,19470257..19470400, 19471313..19471381,19472380..19472463,19474725..19474905, 19475740..19475856,19476036..19476094,19477431..19477565, 19477667..19477816,19478358..19478386,19478680..19478957) /locus_tag="TCM_023871" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30180.m001023" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040982t2" /inference="similar to AA sequence:ricco:30180.m001023" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc596t14" mRNA join(19466296..19466783,19467708..19468006, 19468322..19468450,19469698..19469790,19470257..19470400, 19471313..19471381,19472380..19472463,19474725..19474905, 19475740..19475856,19476036..19476094,19476281..19476397, 19477431..19477456) /locus_tag="TCM_023871" /product="Uncharacterized protein isoform 8" /inference="alignment:exonerate- protein:2:ricco:30180.m001023" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040982t3" /inference="similar to AA sequence:ricco:30180.m001023" /note="transcript variant 8; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc601t8; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc601t8; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc596t14" mRNA join(19466321..19466783,19467708..19468006, 19468322..19468450,19469698..19469790,19470257..19470400, 19471313..19471381,19472380..19472463,19474725..19474905, 19475740..19475856,19476036..19476094,19477431..19477565, 19477667..19477816,19478358..19478382,19478540..19478708) /locus_tag="TCM_023871" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30180.m001023" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040982t2" /inference="similar to AA sequence:ricco:30180.m001023" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc596t12_C1; inference alignment:Newbler:10:TSA:cgbaL_g01079t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc596t14" mRNA join(19466515..19466783,19467708..19468006, 19468322..19468450,19469698..19469790,19470257..19470400, 19471313..19471381,19472380..19472463,19474725..19474905, 19475740..19475856,19476036..19476094,19477431..19477565, 19477667..19477816,19478358..19478868) /locus_tag="TCM_023871" /product="Uncharacterized protein isoform 5" /inference="alignment:exonerate- protein:2:ricco:30180.m001023" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040982t2" /inference="similar to AA sequence:ricco:30180.m001023" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:PASA:2:TSA:puevd3b023089t1a2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc596t14" mRNA join(19466515..19466783,19467708..19468006, 19468322..19468450,19469698..19469790,19470257..19470400, 19471313..19471381,19472380..19472463,19474725..19474905, 19475740..19475856,19476036..19476094,19477431..19477565, 19477667..19477816,19478358..19478382,19478540..19478630) /locus_tag="TCM_023871" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30180.m001023" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040982t2" /inference="similar to AA sequence:ricco:30180.m001023" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01079t00001; alternateUTRof:Thecc1EG023871t2; inference alignment:Newbler:10:TSA:cgbaL_g01079t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc596t14" mRNA join(19466531..19466783,19467708..19468006, 19468322..19468450,19469698..19469790,19470257..19470400, 19471313..19471381,19472380..19472463,19474725..19474905, 19475740..19475856,19476036..19476097,19477431..19477565, 19477667..19477816,19478358..19478382,19478540..19478868) /locus_tag="TCM_023871" /product="Uncharacterized protein isoform 6" /inference="alignment:exonerate- protein:2:ricco:30180.m001023" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040982t2" /inference="similar to AA sequence:ricco:30180.m001023" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4643t1; inference alignment:Newbler:10:TSA:cgbaL_g01079t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc596t14" mRNA join(19466631..19466783,19467708..19468450, 19469698..19469790,19470257..19470400,19471313..19471381, 19472380..19472463,19474725..19474905,19475740..19475856, 19476036..19476094,19477431..19477565,19477667..19477816, 19478358..19478630) /locus_tag="TCM_023871" /product="Uncharacterized protein isoform 7" /inference="alignment:exonerate- protein:2:ricco:30180.m001023" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040982t2" /inference="similar to AA sequence:ricco:30180.m001023" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:PASA:2:TSA:puevd3b023089t1a3; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc596t14" mRNA join(19467048..19467209,19467708..19468006, 19468322..19468450,19469698..19469790,19470257..19470400, 19471313..19471381,19472380..19472463,19474725..19474905, 19475740..19475856,19476036..19476094,19477431..19477565, 19477667..19477816,19478358..19478382,19478540..19478630) /locus_tag="TCM_023871" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30180.m001023" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040982t2" /inference="similar to AA sequence:ricco:30180.m001023" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01079t00002; alternateUTRof:Thecc1EG023871t2; inference alignment:Newbler:10:TSA:cgbaL_g01079t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc596t14" CDS join(19467722..19468006,19468322..19468450, 19469698..19469790,19470257..19470400,19471313..19471381, 19472380..19472463,19474725..19474905,19475740..19475856, 19476036..19476094,19477431..19477565,19477667..19477816, 19478358..19478386,19478680..19478740) /locus_tag="TCM_023871" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30180.m001023; paralog of Thecc1EG040982t2" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY08746.1" /db_xref="TAIR:AT2G40820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IIZ9" /translation="MTKISPEIEESMLKESILAVSADVSFASDHFPKYKLGPENQILE EPKGDNNGPSLKEVVERETTQLSEQHKRLSVRDLASKFDKNLAAAAKLADEAKLREVA SLEGHVLLKKLRDALESLRGRMAGRNKEDVEKAISMVEALAVKLTQKEGELIQEKFEV KKLANFLKQASEDAKKLVNQEKSFACAEIESARAVVQRFGEALEEQEKNSEISQKTQE VEELIEEVQVARRIKLMHQPSKVMGMEHELRALRTQIREKSIFSVKLQKELALNKKAE ENKSRVYILHGSETLGSCLRLQPCSDNAPVLSKSSIQWYRMSSDGNQQEIISGANKIM YAPEPLDVGRILLVDILSNGQKVTVTTSVPIGSAAGLGGYVETLLRKSSSEFNVVISQ INGQDHPSHSTHAFNVGKMRIKLCRGWITKSREIYSTSMLLCGVRGDGNAAAKSLFWQ PRKGLSYVLTCESERERNAAIMVARKHALDCSVMLGGADDQIPKTQRETLGLSKQGTK GMS" CDS join(19467722..19468006,19468322..19468450, 19469698..19469790,19470257..19470400,19471313..19471381, 19472380..19472463,19474725..19474905,19475740..19475856, 19476036..19476097,19477431..19477565,19477667..19477816, 19478358..19478382,19478540..19478565) /locus_tag="TCM_023871" /note="encoded by transcript variant 6; alternatively spliced; dbxref ricco:30180.m001023; paralog of Thecc1EG040982t2" /codon_start=1 /product="Uncharacterized protein isoform 6" /protein_id="EOY08751.1" /db_xref="TAIR:AT2G40820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IIZ9" /translation="MTKISPEIEESMLKESILAVSADVSFASDHFPKYKLGPENQILE EPKGDNNGPSLKEVVERETTQLSEQHKRLSVRDLASKFDKNLAAAAKLADEAKLREVA SLEGHVLLKKLRDALESLRGRMAGRNKEDVEKAISMVEALAVKLTQKEGELIQEKFEV KKLANFLKQASEDAKKLVNQEKSFACAEIESARAVVQRFGEALEEQEKNSEISQKTQE VEELIEEVQVARRIKLMHQPSKVMGMEHELRALRTQIREKSIFSVKLQKELALNKKAE ENKSRVYILHGSETLGSCLRLQPCSDNAPVLSKSSIQWYRMSSDGNQQEIISGANKIM YAPEPLDVGRILLVDILSNGQKVTVTTSVPIGSAAGLGGYVETLLRKSSSEFNVVVIS QINGQDHPSHSTHAFNVGKMRIKLCRGWITKSREIYSTSMLLCGVRGDGNAAAKSLFW QPRKGLSYVLTCESERERNAAIMVARKHALDCSVMLGGADDLGSLFCFA" CDS join(19467722..19468006,19468322..19468450, 19469698..19469790,19470257..19470400,19471313..19471381, 19472380..19472463,19474725..19474905,19475740..19475856, 19476036..19476094,19477431..19477565,19477667..19477816, 19478358..19478382,19478540..19478565) /locus_tag="TCM_023871" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30180.m001023; paralog of Thecc1EG040982t2" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY08747.1" /db_xref="TAIR:AT2G40820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IIZ9" /translation="MTKISPEIEESMLKESILAVSADVSFASDHFPKYKLGPENQILE EPKGDNNGPSLKEVVERETTQLSEQHKRLSVRDLASKFDKNLAAAAKLADEAKLREVA SLEGHVLLKKLRDALESLRGRMAGRNKEDVEKAISMVEALAVKLTQKEGELIQEKFEV KKLANFLKQASEDAKKLVNQEKSFACAEIESARAVVQRFGEALEEQEKNSEISQKTQE VEELIEEVQVARRIKLMHQPSKVMGMEHELRALRTQIREKSIFSVKLQKELALNKKAE ENKSRVYILHGSETLGSCLRLQPCSDNAPVLSKSSIQWYRMSSDGNQQEIISGANKIM YAPEPLDVGRILLVDILSNGQKVTVTTSVPIGSAAGLGGYVETLLRKSSSEFNVVISQ INGQDHPSHSTHAFNVGKMRIKLCRGWITKSREIYSTSMLLCGVRGDGNAAAKSLFWQ PRKGLSYVLTCESERERNAAIMVARKHALDCSVMLGGADDLGSLFCFA" CDS join(19467722..19468006,19468322..19468450, 19469698..19469790,19470257..19470400,19471313..19471381, 19472380..19472463,19474725..19474905,19475740..19475856, 19476036..19476094,19477431..19477565,19477667..19477816, 19478358..19478382,19478540..19478565) /locus_tag="TCM_023871" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30180.m001023; paralog of Thecc1EG040982t2" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY08748.1" /db_xref="TAIR:AT2G40820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IIZ9" /translation="MTKISPEIEESMLKESILAVSADVSFASDHFPKYKLGPENQILE EPKGDNNGPSLKEVVERETTQLSEQHKRLSVRDLASKFDKNLAAAAKLADEAKLREVA SLEGHVLLKKLRDALESLRGRMAGRNKEDVEKAISMVEALAVKLTQKEGELIQEKFEV KKLANFLKQASEDAKKLVNQEKSFACAEIESARAVVQRFGEALEEQEKNSEISQKTQE VEELIEEVQVARRIKLMHQPSKVMGMEHELRALRTQIREKSIFSVKLQKELALNKKAE ENKSRVYILHGSETLGSCLRLQPCSDNAPVLSKSSIQWYRMSSDGNQQEIISGANKIM YAPEPLDVGRILLVDILSNGQKVTVTTSVPIGSAAGLGGYVETLLRKSSSEFNVVISQ INGQDHPSHSTHAFNVGKMRIKLCRGWITKSREIYSTSMLLCGVRGDGNAAAKSLFWQ PRKGLSYVLTCESERERNAAIMVARKHALDCSVMLGGADDLGSLFCFA" CDS join(19467722..19468006,19468322..19468450, 19469698..19469790,19470257..19470400,19471313..19471381, 19472380..19472463,19474725..19474905,19475740..19475856, 19476036..19476094,19477431..19477565,19477667..19477816, 19478358..19478382,19478540..19478565) /locus_tag="TCM_023871" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30180.m001023; paralog of Thecc1EG040982t2" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY08749.1" /db_xref="TAIR:AT2G40820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IIZ9" /translation="MTKISPEIEESMLKESILAVSADVSFASDHFPKYKLGPENQILE EPKGDNNGPSLKEVVERETTQLSEQHKRLSVRDLASKFDKNLAAAAKLADEAKLREVA SLEGHVLLKKLRDALESLRGRMAGRNKEDVEKAISMVEALAVKLTQKEGELIQEKFEV KKLANFLKQASEDAKKLVNQEKSFACAEIESARAVVQRFGEALEEQEKNSEISQKTQE VEELIEEVQVARRIKLMHQPSKVMGMEHELRALRTQIREKSIFSVKLQKELALNKKAE ENKSRVYILHGSETLGSCLRLQPCSDNAPVLSKSSIQWYRMSSDGNQQEIISGANKIM YAPEPLDVGRILLVDILSNGQKVTVTTSVPIGSAAGLGGYVETLLRKSSSEFNVVISQ INGQDHPSHSTHAFNVGKMRIKLCRGWITKSREIYSTSMLLCGVRGDGNAAAKSLFWQ PRKGLSYVLTCESERERNAAIMVARKHALDCSVMLGGADDLGSLFCFA" CDS join(19467722..19468006,19468322..19468450, 19469698..19469790,19470257..19470400,19471313..19471381, 19472380..19472463,19474725..19474905,19475740..19475856, 19476036..19476094,19477431..19477565,19477667..19477816, 19478358..19478390) /locus_tag="TCM_023871" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:30180.m001023; paralog of Thecc1EG040982t2" /codon_start=1 /product="Uncharacterized protein isoform 5" /protein_id="EOY08750.1" /db_xref="TAIR:AT2G40820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IIZ9" /translation="MTKISPEIEESMLKESILAVSADVSFASDHFPKYKLGPENQILE EPKGDNNGPSLKEVVERETTQLSEQHKRLSVRDLASKFDKNLAAAAKLADEAKLREVA SLEGHVLLKKLRDALESLRGRMAGRNKEDVEKAISMVEALAVKLTQKEGELIQEKFEV KKLANFLKQASEDAKKLVNQEKSFACAEIESARAVVQRFGEALEEQEKNSEISQKTQE VEELIEEVQVARRIKLMHQPSKVMGMEHELRALRTQIREKSIFSVKLQKELALNKKAE ENKSRVYILHGSETLGSCLRLQPCSDNAPVLSKSSIQWYRMSSDGNQQEIISGANKIM YAPEPLDVGRILLVDILSNGQKVTVTTSVPIGSAAGLGGYVETLLRKSSSEFNVVISQ INGQDHPSHSTHAFNVGKMRIKLCRGWITKSREIYSTSMLLCGVRGDGNAAAKSLFWQ PRKGLSYVLTCESERERNAAIMVARKHALDCSVMLGGADDQM" CDS join(19467722..19468006,19468322..19468450, 19469698..19469790,19470257..19470400,19471313..19471381, 19472380..19472463,19474725..19474905,19475740..19475856, 19476036..19476094,19476281..19476304) /locus_tag="TCM_023871" /note="encoded by transcript variant 8; alternatively spliced; dbxref ricco:30180.m001023; paralog of Thecc1EG040982t3" /codon_start=1 /product="Uncharacterized protein isoform 8" /protein_id="EOY08753.1" /db_xref="TAIR:AT2G40820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IIZ9" /translation="MTKISPEIEESMLKESILAVSADVSFASDHFPKYKLGPENQILE EPKGDNNGPSLKEVVERETTQLSEQHKRLSVRDLASKFDKNLAAAAKLADEAKLREVA SLEGHVLLKKLRDALESLRGRMAGRNKEDVEKAISMVEALAVKLTQKEGELIQEKFEV KKLANFLKQASEDAKKLVNQEKSFACAEIESARAVVQRFGEALEEQEKNSEISQKTQE VEELIEEVQVARRIKLMHQPSKVMGMEHELRALRTQIREKSIFSVKLQKELALNKKAE ENKSRVYILHGSETLGSCLRLQPCSDNAPVLSKSSIQWYRMSSDGNQQEIISGANKIM YAPEPLDVGRILLVDILSNGQKVTVTTSVPIGSAAGLGGYVETLLRKSSSEFNWCLTT LF" CDS join(19468406..19468450,19469698..19469790, 19470257..19470400,19471313..19471381,19472380..19472463, 19474725..19474905,19475740..19475856,19476036..19476094, 19477431..19477565,19477667..19477816,19478358..19478390) /locus_tag="TCM_023871" /note="encoded by transcript variant 7; alternatively spliced; dbxref ricco:30180.m001023; paralog of Thecc1EG040982t2" /codon_start=1 /product="Uncharacterized protein isoform 7" /protein_id="EOY08752.1" /db_xref="TAIR:AT2G40820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IIZ9" /translation="MAGRNKEDVEKAISMVEALAVKLTQKEGELIQEKFEVKKLANFL KQASEDAKKLVNQEKSFACAEIESARAVVQRFGEALEEQEKNSEISQKTQEVEELIEE VQVARRIKLMHQPSKVMGMEHELRALRTQIREKSIFSVKLQKELALNKKAEENKSRVY ILHGSETLGSCLRLQPCSDNAPVLSKSSIQWYRMSSDGNQQEIISGANKIMYAPEPLD VGRILLVDILSNGQKVTVTTSVPIGSAAGLGGYVETLLRKSSSEFNVVISQINGQDHP SHSTHAFNVGKMRIKLCRGWITKSREIYSTSMLLCGVRGDGNAAAKSLFWQPRKGLSY VLTCESERERNAAIMVARKHALDCSVMLGGADDQM" mobile_element 19471717..19471799 /note="source:CACAO_M_E57469_F369_scaffold_9 1245 1317" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19471726..19471824) /note="source:CACAO_M_E52955_F369_scaffold_8 962 1031" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 19479477..19482589 /locus_tag="TCM_023873" /note="dbxref CacaoGD:Thecc1EG023873" mRNA join(19479477..19479801,19480149..19480366, 19480492..19480776,19480878..19481003,19481122..19481370, 19481484..19481645,19481742..19482589) /locus_tag="TCM_023873" /product="Cyclin b1,5 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30180.m001021" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040973t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s03280.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02422t00001" CDS join(19479756..19479801,19480149..19480366, 19480492..19480776,19480878..19481003,19481122..19481370, 19481484..19481645,19481742..19482071) /locus_tag="TCM_023873" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG040973t1" /codon_start=1 /product="Cyclin b1,5 isoform 1" /protein_id="EOY08754.1" /db_xref="Phytozome:POPTR_0016s03280.1" /db_xref="TAIR:AT5G06150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q39067" /translation="MASRPIVPQQVRGITGAEGVAGGAVNKQTKKNAAGDGRSRRALG DIGNLVNVRGVADGKPQPHRPLTRSFCAQLLANAQAAAAAENNKKNVCVNVDKAPVPD GNNAAPKRAAAAPKPAQKKPTAKPKPVEVIEISPDAEDAVQVKEKKDKVPVNNIDKKA TAGEGSSKKKAHSLTSVLTARSKAACGISNKPKEEIVDIDAADANNDLAGVEYVEDIY KFYKSVENESRPHDYMHLQTDINEKMRAILIDWLIDVHQKFELSAEALYLTINLIDRF LCVKIVPRRELQLLGMSAMLIATKYEEIWPPEVNDLVCIADRAYSHEQILIMEKTILG KLEWTLTVPTTYVFLARFIKASIPDDEKMENMVYFLAELGVMHYESIRYCPSMVAASA VYAARCTLNKTPTWTDTLKFHTGYSEAQLMECARLLAFFHSKAAESRLQVVYRKYSNS QRGAVALLPAPQTLLAAAASV" mRNA join(<19480341..19480363,19480489..19480776, 19480878..19481003,19481122..19481370,19481484..19481645, 19481742..19482074) /locus_tag="TCM_023873" /product="Cyclin family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30180.m001021" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040973t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s03280.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc55t12; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc503t22; inference alignment:Newbler:10:TSA:cgbaP1_g02422t00001" CDS join(<19480343..19480363,19480489..19480776, 19480878..19481003,19481122..19481370,19481484..19481645, 19481742..19482071) /locus_tag="TCM_023873" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG040973t1" /codon_start=1 /product="Cyclin family protein, putative isoform 2" /protein_id="EOY08755.1" /db_xref="Phytozome:POPTR_0016s03280.1" /db_xref="TAIR:AT5G06150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q39067" /translation="AAAAENNQKNVCVNVDKAPVPDGNNAAPKRAAAAPKPAQKKPTA KPKPVEVIEISPDAEDAVQVKEKKDKVPVNNIDKKATAGEGSSKKKAHSLTSVLTARS KAACGISNKPKEEIVDIDAADANNDLAGVEYVEDIYKFYKSVENESRPHDYMHLQTDI NEKMRAILIDWLIDVHQKFELSAEALYLTINLIDRFLCVKIVPRRELQLLGMSAMLIA TKYEEIWPPEVNDLVCIADRAYSHEQILIMEKTILGKLEWTLTVPTTYVFLARFIKAS IPDDEKMENMVYFLAELGVMHYESIRYCPSMVAASAVYAARCTLNKTPTWTDTLKFHT GYSEAQLMECARLLAFFHSKAAESRLQVVYRKYSNSQRGAVALLPAPQTLLAAAASV" gene complement(19480998..19497748) /locus_tag="TCM_023874" /note="dbxref CacaoGD:Thecc1EG023874" mRNA complement(join(19480998..19482883,19483566..19483661, 19489261..19489365,19489509..19489675,19489761..19489830, 19490486..19491035,19492669..19492720,19494675..19494898, 19495039..19495106,19497053..19497337,19497420..19497748)) /locus_tag="TCM_023874" /product="Kinase family protein / protein phosphatase 2C family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025802001" /inference="similar to AA sequence:Phytozome:POPTR_0016s03060.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:PASA:2:TSA:puevd3b023091t1a2; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc57t20" mRNA complement(join(19482052..19482883,19483566..19483661, 19489261..19489365,19489456..19489675,19489761..19489830, 19490486..19491035,19492669..19492720,19494675..19494898, 19495039..19495106,19497053..19497337,19497420..19497539)) /locus_tag="TCM_023874" /product="Kinase family protein / protein phosphatase 2C (PP2C) family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025802001" /inference="similar to AA sequence:Phytozome:GSVIVT01025802001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc57t20; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc57t20" CDS complement(join(19482689..19482883,19483566..19483661, 19489261..19489365,19489456..19489675,19489761..19489830, 19490486..19491035,19492669..19492720,19494675..19494898, 19495039..19495106,19497053..19497337,19497420..19497534)) /locus_tag="TCM_023874" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Kinase family protein / protein phosphatase 2C (PP2C) family protein isoform 1" /protein_id="EOY08756.1" /db_xref="Phytozome:GSVIVT01025802001" /db_xref="TAIR:AT2G40860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IHL4" /translation="MGLDIVQPNTCVRGCCSSDSIPLHLPPSSYILLSPIARGAESVV YEAILDGKRVAVKKPILSTSDELDKFHKELQLLCKLHHPGIATLVAAHARPPNYMFFF QFYEERNLAHKLHVQEWTPDIDHALTITLQLAKALQYLHNQGIIHRDVKPANVLLDQN SSAHLADFGLAEYKKDLRGVSTENWRSSGKPTGGFHKKNMVGTLIYMAPEILRKEIHT EKSDVYSFGVSINELLTGVIPYTDIRAEAQAHTVLEMNYTEQQLTAAVVSGGLRPVLP GIVSGVPASMLSLIQKCWDANPQNRPSFNDIVLELDGILEQRKRMEKEDLSLQKSSIS HGHQVMESINNLHTYQENINWSTQGQCLSKRASAEVHSGFGKWLDSSDESLTYHPVLS WGSFATCGRRESMEDTHFLMPYLCNEKDVHVFGIFDGHRGAAAAEFSAQALPEFLKIL GSTCSPADALLEAFVRTDVAFRNELDSNRNFKRVTQKDWHPGCTAAAALIVRNKLFVA NAGDCRTILCRAGCPLALSRDHVASCLEERDRVVSAGGKVKWQVDTWRVGPAALQVTR SIGDDDLKPAVTAEPEITETVLLLEDEFLVMASDGLWDVVSNMEVISIIRDTVKEPAM CSKRLATEAAERGSRDNITVIVVFLRPVSTAERVY" mobile_element 19487343..19487415 /note="source:scaffold_9_CACTA_0927 3735 3806" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(19489343..19489365,19489509..19489675, 19489761..19489830,19490486..19491035,19492669..19492720, 19494675..19494898,19495039..19495106,19497053..19497337, 19497420..19497534)) /locus_tag="TCM_023874" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Kinase family protein / protein phosphatase 2C family protein isoform 2" /protein_id="EOY08757.1" /db_xref="Phytozome:POPTR_0016s03060.1" /db_xref="TAIR:AT2G40860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IHL4" /translation="MGLDIVQPNTCVRGCCSSDSIPLHLPPSSYILLSPIARGAESVV YEAILDGKRVAVKKPILSTSDELDKFHKELQLLCKLHHPGIATLVAAHARPPNYMFFF QFYEERNLAHKLHVQEWTPDIDHALTITLQLAKALQYLHNQGIIHRDVKPANVLLDQN SSAHLADFGLAEYKKDLRGVSTENWRSSGKPTGGFHKKNMVGTLIYMAPEILRKEIHT EKSDVYSFGVSINELLTGVIPYTDIRAEAQAHTVLEMNYTEQQLTAAVVSGGLRPVLP GIVSGVPASMLSLIQKCWDANPQNRPSFNDIVLELDGILEQRKRMEKEDLSLQKSSIS HGHQVMESINNLHTYQENINWSTQGQCLSKRASAEVHSGFGKWLDSSDESLTYHPVLS WGSFATCGRRESMEDTHFLMPYLCNEKDVHVFGIFDGHRGAAAAEFSAQALPEFLKIL GSTCSPADALLEAFVRTDVAFRNELDSNRNFKRVTQKDWHPGCTAAAALIVRNKLFVA NAGSCRKLS" mobile_element 19499294..19499644 /note="source:CACAO_Mutator_E1149_scaffold_5 1 346" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(19499325..19499701) /note="source:CACAO_Mutator_E39_scaffold_1 3175 3554" /mobile_element_type="transposon:TIR/Mutator" mobile_element 19499743..19503159 /note="source:CACAO_Mutator_E161_scaffold_1 386 3382" /mobile_element_type="transposon:TIR/Mutator" mobile_element 19503160..19505880 /note="source:CACAO_M_E42731_F369_scaffold_5 1 2709" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19505881..19506858 /note="source:CACAO_on_S_E176_scaffold_5 3429 4427" /mobile_element_type="transposon:TIR/Mutator" mobile_element 19506507..19506964 /note="source:scaffold_1_CACTA_0009 8888 9379" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19507347..19511425 /note="source:CACAO_Mutator_E1149_scaffold_5 10117 13722" /mobile_element_type="transposon:TIR/Mutator" mobile_element 19514919..19515239 /note="source:CACAO_Mutator_E592_scaffold_3 19276 19593" /mobile_element_type="transposon:TIR/Mutator" mobile_element 19521609..19523590 /note="source:INTACT622_F276_scaffold_7-int 2692 4657" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19523581..19526633 /note="source:CACAO_hAT_E962_scaffold_2 1 3010" /mobile_element_type="transposon:TIR/hAT" mobile_element 19528138..19531124 /note="source:CACAO_M_S_E5234_F276_scaffold_1 4707 7701" /mobile_element_type="retrotransposon:LTR/Copia" gene 19531601..19533272 /locus_tag="TCM_023881" /note="dbxref CacaoGD:Thecc1EG023881" mRNA join(19531601..19531822,19531974..19532154, 19532566..19532711,19532933..19533272) /locus_tag="TCM_023881" /product="Cystatin, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s03070.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044729t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s03070.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13820t3" CDS join(19531637..19531822,19531974..19532154, 19532566..19532711,19532933..19533049) /locus_tag="TCM_023881" /note="paralog of Thecc1EG044729t1" /codon_start=1 /product="Cystatin, putative" /protein_id="EOY08758.1" /db_xref="Phytozome:POPTR_0016s03070.1" /db_xref="TAIR:AT5G05110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D3W0X9" /translation="MKMNSLRLGLIIVFCAFWELGVCREAEDNLIRMKLGGFRDLHNS AEILSLARFAVQQHNQRQNAFLELARVLKAKEQVVSGKIYHLTLEILDAGGQKSVYEA KVWVKPWINFKQLQEFKRVQDGPQLGWKTVLTNDPKVQDAANHAIKSIRQRSNSLFPY ELLEILLAKMKVVEDYIQFDLLLKLRRGNKEENFKVEITKNKEGKFVMN" gene complement(19533870..19537287) /locus_tag="TCM_023882" /note="dbxref CacaoGD:Thecc1EG023882" mRNA complement(join(19533870..19534779,19534890..19535293, 19536313..19537287)) /locus_tag="TCM_023882" /product="Cytochrome P450, family 98, subfamily A, polypeptide 3" /inference="alignment:exonerate- protein:2:ricco:29940.m000401" /inference="similar to AA sequence:Phytozome:POPTR_0006s03180.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13842t1" CDS complement(join(19534135..19534779,19534890..19535293, 19536313..19536865)) /locus_tag="TCM_023882" /codon_start=1 /product="Cytochrome P450, family 98, subfamily A, polypeptide 3" /protein_id="EOY08759.1" /db_xref="Phytozome:POPTR_0006s03180.1" /db_xref="TAIR:AT2G40890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22203" /translation="MDFVSTHTLLPKIKIEIRKGKEMHLPLLITISVIAISLAYKLYQ RLRFKLPPGPRSWPVVGNLYDIKPVRFRCYAEWAQAYGPIISVWFGSTLNVIVSNSEL AREVLKENDQQLADRHRSRSAAKFSRDGQDLIWADYGPHYVKVRKVCTLELFSPKRLE ALRPIREDEVTAMVESIFNDCNNPDAESKGKSLPVRKYLGTVAFNNITRLAFGKRFVN SEGIMDDQGQEFKAIVANGLKLGASLAMAEHIPWLRWMFPLEEEAFAKHGARRDRLTR AIMEEHTLARHKSGGAKQHFVDALLTLQDKYDLSEDTIIGLLWDMITAGMDTTVISVE WAMAEIIRNPRVQQKAQEELDRVIGFERVMSETDFSSLPYLQSVAKEALRLHPPTPLM LPHRANANVKIGGYDIPKGSNVHVNVWAVARDPAVWKDPEEFRPERFLEEDVDMKGHD FRLLPFGAGRRICPGTQLGINLVTSMLGHLLHHFSWTPAEGVKPEEIDMLENPGMVAY MRTPLQAMATPRLPSHLYKRVAVDV" mobile_element complement(19540375..19541173) /note="source:INTACT85_F9_scaffold_4-int 737 1452" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19541439..19541623) /note="source:scaffold_3_CACTA_0382 10031 10205" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19551360..19555218 /note="source:INTACT160_F4_scaffold_7-int 7619 14939" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19555211..19559482 /note="source:INTACT160_F4_scaffold_7-int 10694 14934" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(19558976..19562063) /locus_tag="TCM_023886" /note="dbxref CacaoGD:Thecc1EG023886" mRNA complement(join(19558976..19559759,19561800..19562063)) /locus_tag="TCM_023886" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014115t1" /inference="similar to AA sequence:Phytozome:Glyma13g43100.1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.34 coverage" CDS complement(join(19559353..19559759,19561800..19561872)) /locus_tag="TCM_023886" /note="paralog of Thecc1EG014115t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08760.1" /db_xref="Phytozome:Glyma13g43100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AUZ8" /translation="MSKEEPLIDLIRVWREIAVRGLDKVEENKVKVLILKVDSKKAFD SVNWKFLDLIMTKMGFGEKWKGWIKECISIASISVLVNGLPTRQFKLMRSLRQGCSLS PFLFNMVVKALSCKLNVTTLPRSLPTSETSERSHQVPNKPSKISETFIKYALMYVYD" gene complement(19560173..19562491) /locus_tag="TCM_023887" /note="dbxref CacaoGD:Thecc1EG023887" mRNA complement(join(19560173..19561352,19561921..19562491)) /locus_tag="TCM_023887" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is medium, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.61 coverage" CDS complement(19560835..19561128) /locus_tag="TCM_023887" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08761.1" /translation="MHRSWPFGLGCDVWEELLGIMGSKDALWCLSGDFNNIRYEHEKT SKGEIGRFVIAFKEFIDELALVDLPLTRAKFIWCGNCGRWVFSHLDRFLLKMD" mobile_element complement(19564862..19565133) /note="source:CACAO_M_S_E4911_F76_scaffold_1 16006 16262" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19565411..19565703) /note="source:CACAO_M_S_E4911_F76_scaffold_1 1 297" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(19569233..19571724) /locus_tag="TCM_023888" /note="dbxref CacaoGD:Thecc1EG023888" mRNA complement(join(19569233..19569748,19570597..19570913, 19571021..19571724)) /locus_tag="TCM_023888" /product="Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025792001" /inference="similar to AA sequence:ricco:29940.m000397" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc919t15" CDS complement(join(19569578..19569748,19570597..19570913, 19571021..19571450)) /locus_tag="TCM_023888" /note="dbxref ricco:29940.m000397" /codon_start=1 /product="Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein" /protein_id="EOY08762.1" /db_xref="TAIR:AT3G56650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LXX5" /translation="MGHDFPYRQGPNQIRSGSTIYPSHPPIFCFLPQKHNSMASATLT LLSPLFPNSLNSSLKLRISTVPRNGSSTLMQENLKFDEKVSLRREVLKGLAMLPLLVL GAAPVSEAREVEVGSYLPPSPTDPSFVVFKASPKDTPALRAGNVQPYQFLIPPSWKQS RVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNKPNASIEEIGSPEK VIASLGPFVTGNSYDPDELLETSVEKRGDQTYYKYVLETPFALTGSHNLAKATAKGST VVLFVASATDKQWPTSQKTLKAMLDSFEV" gene complement(19573054..19576904) /locus_tag="TCM_023889" /note="dbxref CacaoGD:Thecc1EG023889" mRNA complement(join(19573054..19573885,19574733..19576904)) /locus_tag="TCM_023889" /product="Transcription factor hy5, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g27860.1" /inference="similar to AA sequence:ricco:29940.m000398" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13827t1" CDS complement(join(19573455..19573885,19574733..19576365)) /locus_tag="TCM_023889" /note="dbxref ricco:29940.m000398" /codon_start=1 /product="Transcription factor hy5, putative" /protein_id="EOY08763.1" /db_xref="TAIR:AT2G40950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SJN1" /translation="MAEAPAETVMGSELESLAIPPLDPLYLSTDLGFSLDDHDDFQIT FDDFDQFCFPSDSEHLLIPDSSTTPDSDVERYLNSSSPELGSCNGPDSSGNSHSPLSS SGSGNCASAVSEAMNATSPDSENIVDQKISVEEIGKRRVSKRKKDREETDSSKCRRSS LTPSVNNSNSNSDNNNNNNSNAPSEEEEKRRARLMRNRESAQLSRQRKKHYVEELEDK VRTMHSTIADLNNKIAYFMAENATLRQQLSTAGGGGGGGGAVMCPPQPLPMPMYPPMA YPWVPCAPPYVMKPPGSQVPLVPIPRLKPQQPPVPASKAKKNESKTKKVASVSLLGML FFILLFGGLAPIVNDRYDNTPVGSGFVGDGFYEVHRGRVLRVDGHLNGSNNSRDVAFS YGKFDRRNRVHGRGSESGVEQKEKGAHSVPGYMSNGGEPLTASLYVPRNDKLVKIDGN LIIHSVLASEKAMASHKASQIKNEETGLAIPNNFSPALAIPDARENGGKRSREYRNPA ERQMALSSGNADALKDHFKSTVADGKMQQWFREGLAGPMLSSGMCTEVFQFDVSAAIV PASSVTNVSAEHHQNATRHNKGRNRRILHGHPVPLSRSDVNITEQHVGRNSPKENFKG NKTASSMVVSVLFDPREAGDGDIDDMIAPKPLSRIFVVVLVDSVKYVTYSCMLPLPGL HLMTA" mobile_element complement(19577815..19577955) /note="source:CACAO_M_S_E66657_F76_scaffold_5 8372 8491" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19578064..19579827) /note="source:CACAO_M_S_E66657_F76_scaffold_5 6512 8270" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19581823..19583256 /note="source:INTACT85_F9_scaffold_4-int 1 1445" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 19584046..19589195 /locus_tag="TCM_023890" /note="dbxref CacaoGD:Thecc1EG023890" mRNA join(19584046..19584545,19586388..19587006, 19587299..19587584,19588320..19589195) /locus_tag="TCM_023890" /product="Single-stranded nucleic acid binding R3H protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29634.m002139" /inference="similar to AA sequence:Phytozome:POPTR_0016s03230.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13848t3" mRNA join(19584140..19584545,19586388..19587010, 19587299..19587584,19588320..19588479) /locus_tag="TCM_023890" /product="Single-stranded nucleic acid binding R3H protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:29634.m002139" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043919t2" /inference="similar to AA sequence:Phytozome:POPTR_0016s03230.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc38t23; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13848t3" CDS join(19584428..19584545,19586388..19587006, 19587299..19587584,19588320..19588370) /locus_tag="TCM_023890" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Single-stranded nucleic acid binding R3H protein isoform 1" /protein_id="EOY08764.1" /db_xref="Phytozome:POPTR_0016s03230.1" /db_xref="TAIR:AT3G56680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LET8" /translation="MDLTPTTTITAAAMAVNDIESAVDPFLVEALQNPRHRLTILRME LDIQRFLQQSDQHQFEFQHFPTSYLRLAAHRVAQHYGLITMVQDNGLDGLGSRIMVTR TGEIRCPAVRLSEVPAKHSENDKPEQIKIAIRPRPNSGSLNEANQIGIKRSPVRSVEE RKEEYDRARARIFSSPSSSDSDDSSPQISVDGKNESLIRDENENCRNSVVDPEKNITV RDGTCRVAIFRDREKDRTDPDYDRSYQRYVRSIPCNQSFGLAPYNMQKIQLPFLQYDS AFPQLGQIPSTQASLSYGIPASPAVSPFSAVGLNQTSRDGAYMQWPSATMMYSNSYDQ FRHAVFQAPFCHQPLSFDYSQNR" CDS join(19584428..19584545,19586388..19587010) /locus_tag="TCM_023890" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG043919t2" /codon_start=1 /product="Single-stranded nucleic acid binding R3H protein isoform 3" /protein_id="EOY08766.1" /db_xref="Phytozome:POPTR_0016s03230.1" /db_xref="TAIR:AT3G56680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LET8" /translation="MDLTPTTTITAAAMAVNDIESAVDPFLVEALQNPRHRLTILRME LDIQRFLQQSDQHQFEFQHFPTSYLRLAAHRVAQHYGLITMVQDNGLDGLGSRIMVTR TGEIRCPAVRLSEVPAKHSENDKPEQIKIAIRPRPNSGSLNEANQIGIKRSPVRSVEE RKEEYDRARARIFSSPSSSDSDDSSPQISVDGKNESLIRDENENCRNSVVDPEKNITV RDGTCRVAIFRDREKDRTDPDYDRSYQR" mRNA join(19584504..19584545,19586384..19587006, 19587299..19587584,19588320..19589152) /locus_tag="TCM_023890" /product="Single-stranded nucleic acid binding R3H protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29634.m002139" /inference="similar to AA sequence:Phytozome:POPTR_0016s03230.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc37t27; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13848t3" CDS join(19586396..19587006,19587299..19587584, 19588320..19588370) /locus_tag="TCM_023890" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Single-stranded nucleic acid binding R3H protein isoform 2" /protein_id="EOY08765.1" /db_xref="Phytozome:POPTR_0016s03230.1" /db_xref="TAIR:AT3G56680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LET8" /translation="MELDIQRFLQQSDQHQFEFQHFPTSYLRLAAHRVAQHYGLITMV QDNGLDGLGSRIMVTRTGEIRCPAVRLSEVPAKHSENDKPEQIKIAIRPRPNSGSLNE ANQIGIKRSPVRSVEERKEEYDRARARIFSSPSSSDSDDSSPQISVDGKNESLIRDEN ENCRNSVVDPEKNITVRDGTCRVAIFRDREKDRTDPDYDRSYQRYVRSIPCNQSFGLA PYNMQKIQLPFLQYDSAFPQLGQIPSTQASLSYGIPASPAVSPFSAVGLNQTSRDGAY MQWPSATMMYSNSYDQFRHAVFQAPFCHQPLSFDYSQNR" mobile_element 19595942..19596831 /note="source:CACAO_M_S_E64832_F14_scaffold_5 3441 4307" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19597014..19599966 /note="source:CACAO_M_E12604_F246_scaffold_3 1 2958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19603513..19603748 /note="source:scaffold_1_CACTA_0011 3520 3754" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19603666..19604389) /note="source:CACAO_M_E48538_F49_scaffold_6 12203 12896" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19604790..19604861 /note="source:scaffold_8_CACTA_0860 2417 2507" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19605784..19606301 /note="source:CACAO_M_S_E4591_F5_scaffold_1 17895 18516" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19607155..19607848 /note="source:CACAO_M_S_E4591_F5_scaffold_1 18954 19654" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19607828..19607922 /note="source:scaffold_2_CACTA_0261 11423 11515" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19607840..19610332) /note="source:INTACT127_F12_scaffold_6-int 8679 11568" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19610328..19611153 /note="source:CACAO_M_S_E4591_F5_scaffold_1 19643 20444" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19614115..19623847 /note="source:INTACT292_F22_scaffold_5-int 1 9733" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19623792..19623853) /note="source:INTACT605_F14_scaffold_8-int 9476 9535" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19626619..19626752 /note="source:scaffold_8_CACTA_0860 589 722" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19628000..19628143) /note="source:scaffold_8_CACTA_0860 437 578" /mobile_element_type="transposon:TIR/CACTA" gene 19629546..19637140 /locus_tag="TCM_023893" /note="dbxref CacaoGD:Thecc1EG023893" mRNA join(19629546..19630087,19635926..19637140) /locus_tag="TCM_023893" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.52 coverage" mobile_element complement(19630126..19630192) /note="source:CACAO_M_E12463_F12_scaffold_3 4566 4627" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19631043..19632745 /note="source:CACAO_M_S_E64942_F265_scaffold_5 1 1703" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19633507..19634489 /note="source:CACAO_M_S_E64942_F265_scaffold_5 11 990" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19634680..19635295 /note="source:CACAO_M_S_E64942_F265_scaffold_5 1069 1703" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19635572..19635665) /note="source:CACAO_M_S_E5162_F13_scaffold_1 5324 5394" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19635608..19635674) /note="source:scaffold_1_CACTA_0011 7438 7506" /mobile_element_type="transposon:TIR/CACTA" CDS 19636060..19636350 /locus_tag="TCM_023893" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08767.1" /translation="MASPGVLLDRWHHFNSHSCRSNGRRIKSSFGAQRMASPGVNSTG WHHIHNRNLEQSPNGWHHLKYSKMGCINALQAGIIGRTNTTILIYHHPCKHT" mobile_element 19636866..19637088 /note="source:CACAO_M_S_E4413_F3_scaffold_1 16873 17094" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19637144..19638357 /note="source:CACAO_M_S_E4413_F3_scaffold_1 17086 18294" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19638358..19640112 /note="source:CACAO_M_S_E64942_F265_scaffold_5 1 1703" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19640113..19640366 /note="source:CACAO_M_S_E4413_F3_scaffold_1 18290 18543" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19643547..19643936 /note="source:CACAO_M_S_E19828_F19_scaffold_3 10034 10378" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19643746..19643957) /note="source:CACAO_M_E84526_F378_scaffold_10 1830 2031" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19644967..19645260 /note="source:CACAO_M_S_E7818_F60_scaffold_2 20527 20818" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19645256..19648052) /note="source:CACAO_M_S_E85473_F233_scaffold_7 4481 7266" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19648387..19648736) /note="source:CACAO_M_S_E85473_F233_scaffold_7 3928 4246" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19648737..19649902) /note="source:INTACT1820F_F94_scaffold_12-int 573 1725" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19649903..19652896 /note="source:CACAO_M_S_E64951_F7_scaffold_5 1 2994" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19652897..19659456) /note="source:CACAO_M_E3884_F22_scaffold_1 13235 19758" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19659457..19662478 /note="source:CACAO_M_E42586_F54_scaffold_5 1 2938" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19662479..19664345) /note="source:INTACT1820F_F94_scaffold_12-int 1 1835" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19664346..19665516 /note="source:INTACT518_F239_scaffold_2-int 5800 6934" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19670056..19670348 /note="source:CACAO_M_S_E7818_F60_scaffold_2 20527 20818" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19670341..19670382) /note="source:CACAO_M_S_E85473_F233_scaffold_7 7229 7269" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19671243..19674300) /note="source:CACAO_M_S_E15214_F378_scaffold_2 1 3085" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19676947..19695142 /note="source:INTACT33_F7_scaffold_5-int 1 18196" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(19695178..19695948) /locus_tag="TCM_023896" /note="dbxref CacaoGD:Thecc1EG023896" mRNA complement(19695178..19695948) /locus_tag="TCM_023896" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003518t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(19695415..19695915) /locus_tag="TCM_023896" /note="paralog of Thecc1EG003518t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08768.1" /translation="MSRKDNSPDAPHSASEGSLDSTAMSQWHPNLGTPRSDPSRIPIN WIPLELEEWFRNKESFESSESLESEDNTYAREWREKCLKEWHKEQTKEVITKENIHPR KVSVVRHFPLGCGRGAATVSREKYIRIQQAWVKAKMEKSQEVEEDPEQDPSMCSDQGD EDLKDT" mobile_element complement(19696290..19697370) /note="source:CACAO_M_E86305_F7_scaffold_15 7837 8928" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19697370..19698628) /note="source:CACAO_M_E86361_F7_scaffold_15 6206 7468" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19698921..19699488 /note="source:scaffold_2_CACTA_0262 16258 17191" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19699489..19699905 /note="source:CACAO_M_E58601_F7_scaffold_9 4539 4949" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19699906..19700027 /note="source:scaffold_2_CACTA_0262 17192 17395" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19700026..19700134 /note="source:CACAO_M_E1841_F5_scaffold_1 15710 15817" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19700141..19701024 /note="source:scaffold_1_CACTA_0011 8164 9048" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19702638..19712780 /note="source:CACAO_M_S_E64972_F12_scaffold_5 1 10143" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19714903..19715918 /note="source:CACAO_M_S_E146236_F17_scaffold_12 1098 2117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19716035..19723606) /note="source:CACAO_M_S_E5234_F276_scaffold_1 3 7324" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19723607..19724019) /note="source:CACAO_M_S_E38315_F276_scaffold_4 1 412" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19724057..19724204 /note="source:CACAO_M_S_E146236_F17_scaffold_12 5280 5439" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19724750..19725646 /note="source:CACAO_M_S_E146236_F17_scaffold_12 5998 6897" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19725655..19726731 /note="source:CACAO_M_S_E146236_F17_scaffold_12 6844 7975" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19726732..19729463 /note="source:CACAO_M_E42779_F15_scaffold_5 1 2715" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19729464..19730458 /note="source:CACAO_M_S_E146236_F17_scaffold_12 7988 8929" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19730463..19733133 /note="source:CACAO_M_E42780_F345_scaffold_5 1 2671" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19733323..19733662 /note="source:scaffold_2_CACTA_0262 3325 3628" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19733742..19735188 /note="source:scaffold_2_CACTA_0262 3517 5109" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19735183..19738051 /note="source:CACAO_M_E49885_F60_scaffold_7 395 3255" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19738074..19738301) /note="source:scaffold_8_CACTA_0858 7554 7780" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19740850..19741456 /note="source:INTACT85F_F12_scaffold_2-int 8780 9386" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19741457..19744388 /note="source:CACAO_M_E42782_F273_scaffold_5 1 2932" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19744393..19746303) /note="source:CACAO_M_E35511_F5_scaffold_5 16069 17778" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19746306..19746944) /note="source:CACAO_M_E35511_F5_scaffold_5 2259 2897" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19747776..19752385 /note="source:CACAO_M_E35511_F5_scaffold_5 3290 7913" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19756232..19759381 /note="source:scaffold_2_CACTA_0262 11402 14560" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19759292..19759400 /note="source:CACAO_M_E5326_F22_scaffold_2 17817 17915" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19760657..19763634 /note="source:CACAO_M_E42788_F245_scaffold_5 1 2978" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19765262..19765914 /note="source:INTACT280_F60_scaffold_5-int 1 653" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19765915..19766636 /note="source:INTACT280_F60_scaffold_5-int 1000 1733" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19774422..19782829 /note="source:INTACT34_F115_scaffold_5-int 1 8408" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19784886..19794988 /note="source:INTACT41F_F338_scaffold_1-int 1788 9308" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19795012..19795369) /note="source:INTACT39F_F22_scaffold_1-int 6888 7248" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19795446..19798310 /note="source:CACAO_M_S_E18520_F15_scaffold_3 2 2842" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19799822..19799896 /note="source:CACAO_M_E5899_F5_scaffold_2 21568 21642" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19799831..19800083 /note="source:scaffold_2_CACTA_0262 7403 7661" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19803772..19805463 /note="source:INTACT280_F60_scaffold_5-int 1 1733" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19805825..19807531) /note="source:INTACT167_F5_scaffold_2-int 3985 5691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19807532..19810426 /note="source:CACAO_M_E42804_F230_scaffold_5 1 2895" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19810350..19810442) /note="source:scaffold_2_CACTA_0262 5405 5495" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19810410..19810582 /note="source:CACAO_M_E35511_F5_scaffold_5 10428 10600" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19810428..19810581) /note="source:INTACT167_F5_scaffold_2-int 3834 3988" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19810961..19811037) /note="source:CACAO_M_E43428_F369_scaffold_5 1264 1335" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(19828790..>19834199) /locus_tag="TCM_023903" /note="dbxref CacaoGD:Thecc1EG023903" mRNA complement(join(19828790..19828838,19829126..19829167, 19829275..19829321,19834063..>19834199)) /locus_tag="TCM_023903" /product="Uncharacterized protein" /note="quality class is strongpartial, express is strong, homology is none, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc2183t1" gene complement(19828794..19843478) /locus_tag="TCM_023904" /note="dbxref CacaoGD:Thecc1EG023904" mRNA complement(join(19828794..19828838,19829126..19829167, 19837919..19838040,19839424..19839504,19840928..19840942, 19843050..19843478)) /locus_tag="TCM_023904" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038625t1" /note="quality class is medium-utrpoor, express is weak, homology is paralog strong, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.12 coverage" CDS complement(join(19829297..19829321,19834063..>19834199)) /locus_tag="TCM_023903" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08769.1" /translation="PPLKVPSCSFFFPPLHFHRSIPSKTLILYKTLNPSPPTITFLFS VAASRSLLI" mobile_element 19837920..19840923 /note="source:CACAO_M_S_E65011_F7_scaffold_5 1 3004" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(19837925..19838040,19839424..19839504, 19840928..19840937)) /locus_tag="TCM_023904" /note="paralog of Thecc1EG038625t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08770.1" /translation="MVLGDEHFGKSKEIVPENQESEYLEFDSRNREARKTDVKPCKVS IDIPDNECLSGRCGDCHGFDESSG" mobile_element 19841446..19842251 /note="source:CACAO_M_E33933_F9_scaffold_4 13990 15212" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19842899..19844186) /note="source:INTACT132_F12_scaffold_9-int 9278 10563" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19844287..19844657) /note="source:INTACT132_F12_scaffold_9-int 8904 9274" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19846708..19846782 /note="source:CACAO_M_S_E64832_F14_scaffold_5 12601 12676" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19847785..19848016 /note="source:CACAO_M_E48538_F49_scaffold_6 12214 12407" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19849414..19849508) /note="source:INTACT1783F_F12_scaffold_10-int 997 1094" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19849802..19849887) /note="source:INTACT88_F12_scaffold_4-int 13099 13185" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19851186..19851631) /note="source:CACAO_M_S_E119160_F14_scaffold_9 11562 11948" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19851624..19851738) /note="source:INTACT88_F12_scaffold_4-int 12315 12428" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19851731..19852440) /note="source:CACAO_M_E33213_F12_scaffold_4 8120 8823" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19853099..19853113 /note="source:INTACT405F_F91_scaffold_4-int 18421 18438" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19853114..19871932 /note="source:CACAO_M_E42809_F5_scaffold_5 1 18819" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19871856..19871950) /note="source:INTACT199_F5_scaffold_6-int 8464 8549" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(19872022..19873156) /locus_tag="TCM_023909" /note="dbxref CacaoGD:Thecc1EG023909" mRNA complement(join(19872022..19872978,19873110..19873156)) /locus_tag="TCM_023909" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.58 coverage" CDS complement(19872546..19872773) /locus_tag="TCM_023909" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08771.1" /translation="MLEEARLLQFYTRLWHQDALEHHSNTREHNGAVLKENGAPYIGH DAKEGSVITPHKFPKIKILMGFWKLRLLEAL" gene complement(19873632..19898549) /locus_tag="TCM_023910" /note="dbxref CacaoGD:Thecc1EG023910" mRNA complement(join(19873632..19874775,19874948..19874999, 19875121..19875246,19887041..19887142,19891984..19892203, 19895621..19895780,19896841..19896897,19897157..19897371, 19897446..19897529,19897883..19897961,19898054..19898259, 19898347..19898549)) /locus_tag="TCM_023910" /product="WW domain-containing protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s03080.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s03080.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:PASA:2:TSA:puevd3b023127t1a2; inference alignment:Newbler:10:TSA:cgbaB_g05792t00001" mRNA complement(join(19873632..19874775,19874948..19874999, 19875121..19875246,19887041..19887142,19891984..19892203, 19895621..19895780,19896841..19896897,19897157..19897371, 19897446..19897529,19897883..19897961,19898054..19898129, 19898219..19898259,19898347..19898408)) /locus_tag="TCM_023910" /product="WW domain-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s03080.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s03080.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05792t00001" mRNA complement(join(19873953..19874775,19874948..19875000, 19875121..19875246,19887041..19887142,19891984..19892203, 19895621..19895780,19896838..19896897,19897157..19897371, 19897446..19897529,19897883..19897961,19898054..19898129, 19898219..19898259,19898347..19898549)) /locus_tag="TCM_023910" /product="WW domain-containing protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s03080.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s03080.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4783t1; inference alignment:Newbler:10:TSA:cgbaB_g05792t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc500t1_C1" CDS complement(join(19874623..19874775,19874948..19874999, 19875121..19875246,19887041..19887142,19891984..19892203, 19895621..19895780,19896841..19896897,19897157..19897371, 19897446..19897529,19897883..19897961,19898054..19898129, 19898219..19898259,19898347..19898403)) /locus_tag="TCM_023910" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="WW domain-containing protein, putative isoform 1" /protein_id="EOY08772.1" /db_xref="Phytozome:POPTR_0006s03080.1" /db_xref="TAIR:AT2G41020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q67ZZ1" /translation="MEDDLQNQNPVPHVLLHEQEIATQRIIQAQSQRDAAAGPPSKDG TDVFSERPDPNALKEHLLKMTAEHRAEMASKRGKPTPPEQGDIEIGNGYGVPGGGAYY NASGPNIAAPDKKAGYDFMPSNISRNLGLVNNDVSQKNSELCGGSQIKAASKDLPEYL KQKLRARGILKDGAAKDDLSRSDNNLKTSSPQLMAIEKLPPGWVEAKDPSTGASYYYN DGTGKSQWERPVETSLSAQVPFATQLVGDWVEAVDETTGHKYFYNTRTNISQWECPDL SQPVALEHPGSRFSENTVYGNLASQSPNLDKCIGCGGWGVGLVQVWGYCNHCTRVLNL PQSQYLSTITDQQQSANTKDRYENKAPKQRSNGKSLPGKGNRKDKRKHAYNDDDELDP MDPSSYSDAPRGGWIVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQTK KSSSYWTPLSKKGDGSDGLGDAD" CDS complement(join(19874623..19874775,19874948..19874999, 19875121..19875246,19887041..19887142,19891984..19892203, 19895621..19895780,19896841..19896897,19897157..19897371, 19897446..19897529,19897883..19897961,19898054..19898167)) /locus_tag="TCM_023910" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="WW domain-containing protein, putative isoform 2" /protein_id="EOY08773.1" /db_xref="Phytozome:POPTR_0006s03080.1" /db_xref="TAIR:AT2G41020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q67ZZ1" /translation="MISFMCYNKFNFRDAAAGPPSKDGTDVFSERPDPNALKEHLLKM TAEHRAEMASKRGKPTPPEQGDIEIGNGYGVPGGGAYYNASGPNIAAPDKKAGYDFMP SNISRNLGLVNNDVSQKNSELCGGSQIKAASKDLPEYLKQKLRARGILKDGAAKDDLS RSDNNLKTSSPQLMAIEKLPPGWVEAKDPSTGASYYYNDGTGKSQWERPVETSLSAQV PFATQLVGDWVEAVDETTGHKYFYNTRTNISQWECPDLSQPVALEHPGSRFSENTVYG NLASQSPNLDKCIGCGGWGVGLVQVWGYCNHCTRVLNLPQSQYLSTITDQQQSANTKD RYENKAPKQRSNGKSLPGKGNRKDKRKHAYNDDDELDPMDPSSYSDAPRGGWIVGLKG VQPRAADTTATGPLFQQRPYPSPGAVLRKNAEIASQTKKSSSYWTPLSKKGDGSDGLG DAD" CDS complement(join(19874961..19875000,19875121..19875246, 19887041..19887142,19891984..19892203,19895621..19895780, 19896838..19896897,19897157..19897371,19897446..19897529, 19897883..19897961,19898054..19898129,19898219..19898259, 19898347..19898403)) /locus_tag="TCM_023910" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="WW domain-containing protein, putative isoform 3" /protein_id="EOY08774.1" /db_xref="Phytozome:POPTR_0006s03080.1" /db_xref="TAIR:AT2G41020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q67ZZ1" /translation="MEDDLQNQNPVPHVLLHEQEIATQRIIQAQSQRDAAAGPPSKDG TDVFSERPDPNALKEHLLKMTAEHRAEMASKRGKPTPPEQGDIEIGNGYGVPGGGAYY NASGPNIAAPDKKAGYDFMPSNISRNLGLVNNDVSQKNSELCGGSQIKAASKDLPEYL KQKLRARGILKDGAAKDDLSRSDNNLKTSSPQLMAIEKLPPGWVVEAKDPSTGASYYY NDGTGKSQWERPVETSLSAQVPFATQLVGDWVEAVDETTGHKYFYNTRTNISQWECPD LSQPVALEHPGSRFSENTVYGNLASQSPNLDKCIGCGGWGVGLVQVWGYCNHCTRVLN LPQSQYLSTITDQQQSANTKDRYENKAPKQRSNGKSLPGKGNRKDKRKHAYNDDDELD PMDPSSYSDAPRGGWDCWVERSTATSC" mobile_element complement(19876611..19881366) /note="source:CACAO_M_S_E66869_F40_scaffold_6 1 4855" /mobile_element_type="retrotransposon:LTR/Copia" gene 19881699..19887376 /locus_tag="TCM_023912" /note="dbxref CacaoGD:Thecc1EG023912" mRNA join(19881699..19881933,19882927..19883012, 19883171..19883330,19887087..19887376) /locus_tag="TCM_023912" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.15 coverage" CDS join(19882933..19883012,19883171..19883303) /locus_tag="TCM_023912" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08775.1" /translation="MSGTKVRALERELDNVSSKEDDEQAMRLSSEQESQPQEGKEEKA MMATRSDNDSSTLDDDETKVELKANL" mobile_element 19883525..19883617 /note="source:CACAO_M_E69283_F22_scaffold_9 2443 2540" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19887223..19887283 /note="source:scaffold_5_CACTA_0596 7005 7066" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(19887236..19887285) /note="source:CACAO_M_E42343_F106_scaffold_5 6715 6764" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19899946..19900297 /note="source:CACAO_M_E42343_F106_scaffold_5 12082 12434" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19903539..19905035 /note="source:CACAO_M_E42813_F17_scaffold_5 1 1497" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19905638..19905789 /note="source:scaffold_9_CACTA_0937 16640 16792" /mobile_element_type="transposon:TIR/CACTA" gene 19907974..19916845 /locus_tag="TCM_023913" /note="dbxref CacaoGD:Thecc1EG023913" mRNA join(19907974..19908680,19908772..19909211, 19910275..19910520,19910867..19911026,19916417..19916845) /locus_tag="TCM_023913" /product="FAD-dependent oxidoreductase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s02700.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s02700.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:PASA:2:TSA:puevd3b023130t1a2; alternateUTRof:Thecc1EG023913t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4736t3" mRNA join(19907974..19908680,19908772..19909211, 19910867..19911026,19916417..19916845) /locus_tag="TCM_023913" /product="FAD-dependent oxidoreductase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s02700.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s02700.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc586t10; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc586t10" mRNA join(19907974..19908680,19908772..19909211, 19910867..19911017,19916417..19916845) /locus_tag="TCM_023913" /product="FAD-dependent oxidoreductase family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s02700.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s02700.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:PASA:2:TSA:puevd3b023130t1a3; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc586t10" mRNA join(19907974..19908680,19908772..19909211, 19909382..19909559,19910275..19910300) /locus_tag="TCM_023913" /product="FAD-dependent oxidoreductase family protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s02700.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s02700.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc586t7; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4736t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc586t10" mRNA join(19907987..19908680,19908772..19909211, 19910275..19910542,19910867..19911026,19916417..19916446) /locus_tag="TCM_023913" /product="FAD-dependent oxidoreductase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s02700.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s02700.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1085t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4736t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc586t10" CDS join(19908132..19908680,19908772..19909211, 19910867..19911026,19916417..19916530) /locus_tag="TCM_023913" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="FAD-dependent oxidoreductase family protein isoform 1" /protein_id="EOY08776.1" /db_xref="Phytozome:POPTR_0006s02700.1" /db_xref="TAIR:AT3G56840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LES4" /translation="MLRQGVGRLISKSKRRINLPAKSWNAPKEKAECVVIGAGIVGVA VARELSLKGKEVLVLDSAPTFGTATSSRNSEVIHAGIYYPSNSLKARFCVRGRNLLYQ YCSQHGIPHKQIGKLIVATGASDIPKLNHLLNRGIQNGVEGLRMLDASEAITMEPELQ CVKALLSPSSGIVDTHSLMLSLVAEAETKGTTFSYNTTVVGGHLEENQMALHVSESKS LGNWDGSTPLQPDLILSPKFVVNSSGLSASALAKRFHGLNTATIPPAYYARGSYFTLS NSTRLAPFKHLIYPIPEEGGLGVHVTLDLDGQLKFGPDVEWIRHIDDTSSFLNRFNYS VSADRVERFYPEIRKYYPNLKDGSLLPGYAGIRPKLSGPGQSACDFVIQEGEIHGVTG LVNLFGIESPGLTSSMAIAEYVAARLLG" CDS join(19908132..19908680,19908772..19909211, 19910867..19911017,19916417..19916530) /locus_tag="TCM_023913" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="FAD-dependent oxidoreductase family protein isoform 4" /protein_id="EOY08779.1" /db_xref="Phytozome:POPTR_0006s02700.1" /db_xref="TAIR:AT3G56840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LES4" /translation="MLRQGVGRLISKSKRRINLPAKSWNAPKEKAECVVIGAGIVGVA VARELSLKGKEVLVLDSAPTFGTATSSRNSEVIHAGIYYPSNSLKARFCVRGRNLLYQ YCSQHGIPHKQIGKLIVATGASDIPKLNHLLNRGIQNGVEGLRMLDASEAITMEPELQ CVKALLSPSSGIVDTHSLMLSLVAEAETKGTTFSYNTTVVGGHLEENQMALHVSESKS LGNWDGSTPLQPDLILSPKFVVNSSGLSASALAKRFHGLNTATIPPAYYARGSYFTLS NSTRLAPFKHLIYPIPEEGGLGVHVTLDLDGQLKFGPDVEWIRHIDDTSSFLNRFNYS VSADRVERFYPEIRKYYPNLKDGSLLPGYAGIRPKLSGPGQSACDFEGEIHGVTGLVN LFGIESPGLTSSMAIAEYVAARLLG" CDS join(19908132..19908680,19908772..19909211, 19910275..19910317) /locus_tag="TCM_023913" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="FAD-dependent oxidoreductase family protein isoform 2" /protein_id="EOY08777.1" /db_xref="Phytozome:POPTR_0006s02700.1" /db_xref="TAIR:AT3G56840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LES4" /translation="MLRQGVGRLISKSKRRINLPAKSWNAPKEKAECVVIGAGIVGVA VARELSLKGKEVLVLDSAPTFGTATSSRNSEVIHAGIYYPSNSLKARFCVRGRNLLYQ YCSQHGIPHKQIGKLIVATGASDIPKLNHLLNRGIQNGVEGLRMLDASEAITMEPELQ CVKALLSPSSGIVDTHSLMLSLVAEAETKGTTFSYNTTVVGGHLEENQMALHVSESKS LGNWDGSTPLQPDLILSPKFVVNSSGLSASALAKRFHGLNTATIPPAYYARGSYFTLS NSTRLAPFKHLIYPIPEEGGLGVHVTLDLDGQLKFGPDVEWIRHIDDTSSFLNRHCIL FSIVLEAKI" CDS join(19908132..19908680,19908772..19909211, 19910275..19910317) /locus_tag="TCM_023913" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="FAD-dependent oxidoreductase family protein isoform 2" /protein_id="EOY08778.1" /db_xref="Phytozome:POPTR_0006s02700.1" /db_xref="TAIR:AT3G56840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LES4" /translation="MLRQGVGRLISKSKRRINLPAKSWNAPKEKAECVVIGAGIVGVA VARELSLKGKEVLVLDSAPTFGTATSSRNSEVIHAGIYYPSNSLKARFCVRGRNLLYQ YCSQHGIPHKQIGKLIVATGASDIPKLNHLLNRGIQNGVEGLRMLDASEAITMEPELQ CVKALLSPSSGIVDTHSLMLSLVAEAETKGTTFSYNTTVVGGHLEENQMALHVSESKS LGNWDGSTPLQPDLILSPKFVVNSSGLSASALAKRFHGLNTATIPPAYYARGSYFTLS NSTRLAPFKHLIYPIPEEGGLGVHVTLDLDGQLKFGPDVEWIRHIDDTSSFLNRHCIL FSIVLEAKI" CDS join(19908132..19908680,19908772..19909211, 19909382..19909445) /locus_tag="TCM_023913" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="FAD-dependent oxidoreductase family protein isoform 5" /protein_id="EOY08780.1" /db_xref="Phytozome:POPTR_0006s02700.1" /db_xref="TAIR:AT3G56840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LES4" /translation="MLRQGVGRLISKSKRRINLPAKSWNAPKEKAECVVIGAGIVGVA VARELSLKGKEVLVLDSAPTFGTATSSRNSEVIHAGIYYPSNSLKARFCVRGRNLLYQ YCSQHGIPHKQIGKLIVATGASDIPKLNHLLNRGIQNGVEGLRMLDASEAITMEPELQ CVKALLSPSSGIVDTHSLMLSLVAEAETKGTTFSYNTTVVGGHLEENQMALHVSESKS LGNWDGSTPLQPDLILSPKFVVNSSGLSASALAKRFHGLNTATIPPAYYARGSYFTLS NSTRLAPFKHLIYPIPEEGGLGVHVTLDLDGQLKFGPDVEWIRHIDDTSSFLNRSTIG RYVFLQLTRLWSHVEE" mobile_element complement(19919270..19920397) /note="source:scaffold_2_CACTA_0263 1991 3118" /mobile_element_type="transposon:TIR/CACTA" mobile_element 19920393..19920479 /note="source:INTACT904F_F49_scaffold_6-int 8753 8844" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19920462..19922381) /note="source:CACAO_M_S_E119872_F88_scaffold_10 139 1996" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(19930014..19932908) /note="source:INTACT88_F12_scaffold_4-int 1267 4203" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19933434..19933676) /note="source:CACAO_M_E58601_F7_scaffold_9 3046 3289" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19933581..19934625) /note="source:CACAO_M_S_E15173_F4_scaffold_2 13205 14267" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 19938204..19941150 /note="source:CACAO_M_E10603_F306_scaffold_2 4817 7782" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19944713..19947471) /note="source:INTACT85F_F12_scaffold_2-int 8779 11466" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19947372..19947484 /note="source:CACAO_M_S_E64832_F14_scaffold_5 12576 12686" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19948336..19948806) /note="source:CACAO_M_E4676_F9_scaffold_2 12221 12689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19948815..19951809 /note="source:CACAO_M_E42823_F7_scaffold_5 1 2995" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19951817..19952363 /note="source:CACAO_M_E33933_F9_scaffold_4 874 1433" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19952959..19953032) /note="source:CACAO_M_S_E51648_F22_scaffold_4 1102 1170" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19964258..19964332) /note="source:CACAO_M_S_E4591_F5_scaffold_1 18869 18943" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19964430..19967389 /note="source:CACAO_M_E43269_F230_scaffold_5 1 2928" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19967390..19967670) /note="source:CACAO_M_S_E4591_F5_scaffold_1 18601 18894" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19967729..19970693 /note="source:CACAO_M_E42827_F134_scaffold_5 1 2965" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19971388..19971471 /note="source:CACAO_M_E59463_F12_scaffold_9 7455 7538" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19971992..19973683) /note="source:CACAO_M_S_E4413_F3_scaffold_1 16873 18561" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19976776..19977980 /note="source:CACAO_M_E3248_F5_scaffold_1 24591 25786" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19981176..19981352) /note="source:INTACT242_F12_scaffold_1-int 2975 3148" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19981421..19981564) /note="source:INTACT39F_F22_scaffold_1-int 5554 5685" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19982594..19992780 /note="source:INTACT731_F12_scaffold_5-int 1 10187" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 19993960..19996911 /note="source:CACAO_M_E42839_F81_scaffold_5 1 2952" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(19999289..20000013) /note="source:INTACT262_F12_scaffold_3-int 8600 9329" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20000018..20000368 /note="source:CACAO_M_S_E4591_F5_scaffold_1 18169 18519" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20000616..20003588 /note="source:CACAO_M_E48708_F230_scaffold_6 1 2896" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20004452..20005419 /note="source:CACAO_M_S_E4591_F5_scaffold_1 19457 20387" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20006003..20006252 /note="source:CACAO_M_E35674_F13_scaffold_5 4513 4763" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(20012089..20013086) /locus_tag="TCM_023921" /note="dbxref CacaoGD:Thecc1EG023921" mRNA complement(20012089..20013086) /locus_tag="TCM_023921" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017238t1" /inference="similar to AA sequence:Phytozome:Glyma14g01400.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.53 coverage" CDS complement(20012676..20012933) /locus_tag="TCM_023921" /note="paralog of Thecc1EG017238t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08781.1" /db_xref="Phytozome:Glyma14g01400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6L4N0" /translation="MDNFFIFGSNFDDCLLNFDRVLRQCEETNLVLNWEKCYFMVQEG MVLIHKVSSKGLEVDKAKIEGIEKLPPPNLVRGILKFPWTH" mobile_element 20013436..20014322 /note="source:CACAO_M_E12463_F12_scaffold_3 3544 4408" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20014270..20014332) /note="source:CACAO_M_S_E4591_F5_scaffold_1 19057 19122" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20014340..20017347 /note="source:CACAO_M_S_E65055_F7_scaffold_5 1 3008" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20019406..20022392 /note="source:CACAO_M_S_E65057_F7_scaffold_5 1 2987" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20024278..20024565) /note="source:CACAO_M_E58148_F12_scaffold_9 10660 10934" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20027215..20027291 /note="source:scaffold_1_CACTA_0011 7484 7558" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20027237..20029646) /note="source:CACAO_M_E52239_F256_scaffold_7 19814 22251" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20028900..20029745 /note="source:CACAO_M_S_E64608_F12_scaffold_5 4707 5573" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20032815..20032862 /note="source:INTACT265_F12_scaffold_7-int 12248 12295" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20032824..20032865) /note="source:CACAO_M_E48708_F230_scaffold_6 1748 1789" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20035003..20035048 /note="source:CACAO_M_E12463_F12_scaffold_3 4557 4602" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 20035544..20036427 /locus_tag="TCM_023923" /note="dbxref CacaoGD:Thecc1EG023923" mRNA 20035544..20036427 /locus_tag="TCM_023923" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30180.m001051" /note="quality class is medium-utrpoor, express is strong, homology is ortholog weak, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Newbler:10:TSA:cgbaB_g12919t00001" CDS 20035926..20036210 /locus_tag="TCM_023923" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08782.1" /translation="MTWVLSKKKQMSLRKGLACLSLLLLMLLQFETPCFAGVYDHNHN RFRAGSGASLSPNFKSQGGFKGSNTAKDGDDIFGAEQRKVYTGPNPLHNR" gene complement(20042504..20050276) /locus_tag="TCM_023924" /note="dbxref CacaoGD:Thecc1EG023924" mRNA complement(join(20042504..20043277,20044375..20044490, 20045611..20045747,20047691..20047854,20047935..20048015, 20048412..20048591,20048772..20048901,20048997..20049155, 20049248..20049484,20049908..20050276)) /locus_tag="TCM_023924" /product="Aldolase superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30180.m001052" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040868t2" /inference="similar to AA sequence:Phytozome:GSVIVT01025756001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00612t00002" CDS complement(join(20043032..20043277,20044375..20044490, 20045611..20045747,20047691..20047854,20047935..20048015, 20048412..20048591,20048772..20048901,20048997..20049124)) /locus_tag="TCM_023924" /note="paralog of Thecc1EG040868t2" /codon_start=1 /product="Aldolase superfamily protein" /protein_id="EOY08783.1" /db_xref="Phytozome:GSVIVT01025756001" /db_xref="TAIR:AT2G26800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O81027" /translation="MIAARRVDKISRLKGTPAPKSMTTVIGGGATPSSSSSSLKALNK ESLLRREFLYPKNRLLGNNNRDPGYLSTYHYSSICNHRPTNKVLRNLPGYVKIVEVGP RDGLQNEKEIVPTTVKVQLIKMLVSSGLTVVEATSFVSPKWVPQLADAKDVMDAIQNI QGGRFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCSIKDSLARYRDVASA ARELSLPVRGYISCVVGCPVEGTVPPSKVAYVAKQLFDMGCSEISLGDTIGVGTPGTV IPMLENVIHVVPIDKLAVHFHDTYGQALSNILISLQMGISTVDSSVSGLGGCPYAKGA SGNVATEDVVYMLNGLGVETHVDLEKLMLAGDFICKHLGRPSSSKTAVALSSKKANSK L" gene complement(20046038..20047828) /locus_tag="TCM_023925" /note="dbxref CacaoGD:Thecc1EG023925" mRNA complement(join(20046038..20047179,20047691..20047828)) /locus_tag="TCM_023925" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc146t7_C2" CDS complement(20046749..20047030) /locus_tag="TCM_023925" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08784.1" /translation="MLSNTFKYCLSLELQKHLEIWLKRHSSLALSATRHYFESVNVSN DKNCINLQQNVSFKSSVEQEEQPAKDHTSKVWSVDMHFGYLVASVISPF" mobile_element complement(20052121..20052277) /note="source:CACAO_M_E58819_F24_scaffold_9 792 944" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20053707..20056236) /note="source:scaffold_5_CACTA_0603 1 2546" /mobile_element_type="transposon:TIR/CACTA" gene complement(20055789..20058974) /locus_tag="TCM_023926" /note="dbxref CacaoGD:Thecc1EG023926" mRNA complement(join(20055789..20056859,20057922..20058307, 20058419..20058974)) /locus_tag="TCM_023926" /product="BZIP-like protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044157t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400054729" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.12 coverage" CDS complement(join(20055974..20056859,20057922..20058307, 20058419..20058766)) /locus_tag="TCM_023926" /note="paralog of Thecc1EG044157t1" /codon_start=1 /product="BZIP-like protein" /protein_id="EOY08785.1" /db_xref="Phytozome:PGSC0003DMP400054729" /translation="MLPLPFFSSLSLSFFCFVVVLPLPFFFSFSFFFSFSFLFLLCHV RSLFFFFSFSFSIPQAPHSLPSLSFFLSFSLSPLSFLPPFFLVALTFLLLSSSSFSIL ADPPLSSFSLCLFFLRRRKSGALRSKLIGPRVRIRSSFLEVCKRWDMSLLVKNALNLL RVHQQHQFVETPSTPPFKASESFIPNAMILNFLMRIDEKLNEQAKRERKMEERILKIE ERLQNIETSLLKKKQKAKNPYNFFFQRFNADLIPHLISDLDNQTLCAEPTMEEVKEVV YAIDKDSVAGPDAFSSLFYQQCWHIIADDLLIAVRDSFTSSTMPRGVTSTSLVLLAKK SIAESWSDFRPISLCTVFNKIITKLLVNQLAKVLSSLISDNQSGFVSGRLISDNILLA QELVGKIDYKARGGNVILKLDMMKAYDRLNWDFLYLILEHFGFSSQWIDMIKRCISNY WFSLLVNGHLVGYFKSEKGLCQGDSILPLLFILAAEYLSRGINSIFAQYKSLHFYSRR SLNISHLAFADDIMIFTNGSKSALEKVLGFL" mobile_element 20067111..20070226 /note="source:CACAO_M_E42850_F115_scaffold_5 1 3116" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20075021..20076259 /note="source:CACAO_M_E1841_F5_scaffold_1 8386 9637" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20076256..20076414 /note="source:CACAO_M_E5899_F5_scaffold_2 21637 21795" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20076393..20077287 /note="source:CACAO_M_E1841_F5_scaffold_1 15772 16675" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20077603..20077862) /note="source:INTACT459_F220_scaffold_4-int 8337 8571" /mobile_element_type="retrotransposon:LTR/Copia" gene 20077805..20082710 /locus_tag="TCM_023927" /note="dbxref CacaoGD:Thecc1EG023927" mRNA join(20077805..20078261,20080665..20080776, 20080869..20080929,20081060..20081098,20081342..20081454, 20081795..20082071,20082148..20082194,20082311..20082710) /locus_tag="TCM_023927" /product="Oxidoreductases isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034815001" /inference="similar to AA sequence:ricco:29907.m000632" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Newbler:10:TSA:cgbaB_g10926t00001" CDS join(20078065..20078261,20080665..20080776, 20080869..20080929,20081060..20081098,20081342..20081454, 20081795..20082071,20082148..20082194,20082311..20082466) /locus_tag="TCM_023927" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29907.m000632" /codon_start=1 /product="Oxidoreductases isoform 1" /protein_id="EOY08786.1" /db_xref="TAIR:AT4G20350.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I795" /translation="MGCWILSTRPILEYFCITLLIALLYHPPPTPPPRAILLSLVFFR FGYNLCSLSPDGESPATLYVNWGMERKEKLNNFIVGDLPTLIYIPDFITDSEQAQLLN NIYQAPVSKWKSLKNRRLQNWGGVVHEKGLLPQDLPPWLAKITKRIYEGSGLFPSAIN HVLINEYLSNQGIMPHQDGPAYYPVVAILSLGSPVVMDFTPHSRLQSCKRTLKENVGD KISNGGAVAIEANDGSDNNRPFSVLLMPCSLLIFKDDAYSGKFMSKGLYYLHGIEDSE VHRFDLAVNEIDSLSLSSSGQAEVMRSDNAKIVSRTANRISLTCRLVLKVHKNLFKF" mRNA join(20078162..20078261,20080665..20080776, 20080869..20080929,20081060..20081098,20081342..20081454, 20081795..20082047,20082148..20082194,20082311..20082665) /locus_tag="TCM_023927" /product="Oxidoreductases, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034815001" /inference="similar to AA sequence:ricco:29907.m000632" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaB_g10926t00001; inference alignment:Newbler:10:TSA:cgbaB_g10926t00001; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc146t10" CDS join(20080669..20080776,20080869..20080929, 20081060..20081098,20081342..20081454,20081795..20082047, 20082148..20082194,20082311..20082466) /locus_tag="TCM_023927" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29907.m000632" /codon_start=1 /product="Oxidoreductases, putative isoform 2" /protein_id="EOY08787.1" /db_xref="TAIR:AT4G20350.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I795" /translation="MERKEKLNNFIVGDLPTLIYIPDFITDSEQAQLLNNIYQAPVSK WKSLKNRRLQNWGGVVHEKGLLPQDLPPWLAKITKRIYEGSGLFPSAINHVLINEYLS NQGIMPHQDGPAYYPVVAILSLGSPVVMDFTPHSRLQSCKRTLKENVGDKISNGGAVA IEANDGSDNNRPFSVLLMPCSLLIFKDDAYSDYLHGIEDSEVHRFDLAVNEIDSLSLS SSGQAEVMRSDNAKIVSRTANRISLTCRLVLKVHKNLFKF" mobile_element complement(20084713..20087808) /note="source:CACAO_M_S_E31651_F51_scaffold_3 9 3102" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20087809..20100865 /note="source:CACAO_M_S_E65068_F306_scaffold_5 1 13057" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20102626..20102652) /note="source:INTACT1817F_F27_scaffold_11-int 542 560" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20102653..20105435 /note="source:CACAO_M_E42855_F15_scaffold_5 1 2783" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20105436..20105464 /note="source:INTACT239_F181_scaffold_4-int 4750 4774" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20105499..20105609 /note="source:INTACT280_F60_scaffold_5-int 3692 3803" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20106616..20106883 /note="source:CACAO_M_E5899_F5_scaffold_2 19652 19919" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20106884..20108388) /note="source:INTACT95_F143_scaffold_9-int 1466 2963" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20108367..20108510) /note="source:INTACT39F_F22_scaffold_1-int 5451 5593" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20108809..20110009 /note="source:CACAO_M_E5667_F369_scaffold_2 1 1202" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20110541..20111230 /note="source:INTACT845F_F369_scaffold_5-int 1038 1687" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20111683..20112237) /note="source:INTACT642F_F365_scaffold_5-int 6800 7348" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20112850..20113076 /note="source:CACAO_M_E50370_F369_scaffold_7 1262 1461" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20113077..20115930 /note="source:CACAO_M_S_E65082_F15_scaffold_5 1 2854" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20115821..20115951) /note="source:CACAO_M_S_E85957_F12_scaffold_7 6842 6970" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20115930..20117125) /note="source:CACAO_M_S_E6650_F369_scaffold_2 1 1247" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20117720..20117904 /note="source:CACAO_M_E1841_F5_scaffold_1 16015 16199" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20119583..20120228) /note="source:INTACT845F_F369_scaffold_5-int 1051 1683" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20120796..20121272 /note="source:CACAO_M_E1841_F5_scaffold_1 16196 16662" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20121270..20121538 /note="source:CACAO_M_E5899_F5_scaffold_2 19912 20178" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20123822..20124162 /note="source:CACAO_M_E1841_F5_scaffold_1 16126 16467" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20125406..20126901 /note="source:scaffold_3_CACTA_0382 296 1793" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20126902..20129646) /note="source:CACAO_M_S_E38117_F15_scaffold_4 1 2788" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20129647..20129683 /note="source:CACAO_M_S_E85177_F5_scaffold_7 17118 17150" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20131132..20131262) /note="source:CACAO_M_E14312_F12_scaffold_3 7192 7301" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20131252..20132967 /note="source:INTACT95_F143_scaffold_9-int 4719 6406" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20132964..20133604) /note="source:CACAO_M_S_E50960_F369_scaffold_4 2741 3380" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20133602..20135143 /note="source:scaffold_3_CACTA_0388 9501 10978" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20135157..20135258) /note="source:CACAO_M_E58819_F24_scaffold_9 14312 14425" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20135171..20135690 /note="source:CACAO_M_E1841_F5_scaffold_1 25281 25801" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20135716..20136875 /note="source:INTACT518_F239_scaffold_2-int 2495 3659" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20136861..20137431) /note="source:CACAO_M_E1841_F5_scaffold_1 25225 25801" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20136985..20138287 /note="source:CACAO_M_S_E5046_F335_scaffold_1 18272 19561" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20137920..20139371) /note="source:INTACT518_F239_scaffold_2-int 7179 8542" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20139370..20139685 /note="source:INTACT518_F239_scaffold_2-int 5074 5391" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20139686..20142381 /note="source:CACAO_M_E42874_F369_scaffold_5 1 2696" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20142382..20145150 /note="source:INTACT518_F239_scaffold_2-int 5387 8084" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20145107..20145181 /note="source:scaffold_2_CACTA_0256 2655 2730" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20146198..20146270 /note="source:scaffold_3_CACTA_0382 1862 1938" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20146857..20147412 /note="source:CACAO_M_E1841_F5_scaffold_1 25234 25802" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20155709..20155973) /note="source:CACAO_M_E52253_F12_scaffold_7 820 1080" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20155974..20158759 /note="source:INTACT30F_F12_scaffold_1-int 11997 14709" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20158756..20159582) /note="source:CACAO_M_E52253_F12_scaffold_7 1 827" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20162253..20164093 /note="source:INTACT39F_F22_scaffold_1-int 208 2038" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20162425..20165090) /note="source:CACAO_M_E44503_F22_scaffold_6 6990 9623" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20165058..20166577 /note="source:INTACT293_F14_scaffold_5-int 8659 10139" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20166116..20167071) /note="source:INTACT146F_F14_scaffold_2-int 3857 4929" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20167105..20172655) /note="source:CACAO_M_E44503_F22_scaffold_6 2125 7749" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20172650..20172883) /note="source:INTACT146F_F14_scaffold_2-int 3029 3262" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20172688..20174167) /note="source:INTACT612_F91_scaffold_5-int 1 1517" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20174175..20176770) /note="source:CACAO_M_E59641_F12_scaffold_9 10421 13003" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20176671..20176783 /note="source:CACAO_M_E3248_F5_scaffold_1 18737 18852" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20177652..20177834 /note="source:INTACT649F_F368_scaffold_5-int 1 189" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20178079..20178175 /note="source:INTACT649F_F368_scaffold_5-int 14333 14431" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20178445..20178483) /note="source:INTACT261_F189_scaffold_2-int 1075 1113" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20180387..20180747 /note="source:INTACT649F_F368_scaffold_5-int 15710 16071" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20180805..20181301 /note="source:INTACT649F_F368_scaffold_5-int 358 873" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20181311..20182512 /note="source:INTACT649F_F368_scaffold_5-int 789 2000" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20183978..20184019) /note="source:INTACT261_F189_scaffold_2-int 12733 12775" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20185934..20186555 /note="source:INTACT649F_F368_scaffold_5-int 1587 2211" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20186556..20187863) /note="source:CACAO_M_E35511_F5_scaffold_5 9266 10599" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20188502..20189022 /note="source:INTACT224_F176_scaffold_8-int 16866 17385" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20189610..20190547) /note="source:INTACT223_F175_scaffold_5-int 1 938" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20191912..20192010 /note="source:CACAO_M_S_E31635_F14_scaffold_3 2402 2500" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20193211..20195940 /note="source:CACAO_M_E42894_F73_scaffold_5 1 2730" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20195992..20196029) /note="source:INTACT223_F175_scaffold_5-int 6243 6280" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20196019..20199382 /note="source:INTACT224_F176_scaffold_8-int 6355 9712" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20199386..20199788) /note="source:CACAO_M_S_E64832_F14_scaffold_5 3906 4309" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20199781..20202136) /note="source:CACAO_M_E42395_F3_scaffold_5 15059 17493" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20200985..20204381 /note="source:CACAO_M_E24592_F195_scaffold_4 2289 3874" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20204379..20206886) /note="source:INTACT41F_F338_scaffold_1-int 1845 4351" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20207003..20207547) /note="source:CACAO_M_S_E64832_F14_scaffold_5 10941 11517" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20207544..20208503) /note="source:INTACT223_F175_scaffold_5-int 6159 7144" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20209847..20209945 /note="source:CACAO_M_S_E31635_F14_scaffold_3 2402 2500" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20211199..20211641) /note="source:CACAO_M_E35511_F5_scaffold_5 8743 9190" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20212601..20214321) /note="source:INTACT1421F_F389_scaffold_9-int 7541 9260" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20214309..20214805 /note="source:INTACT649F_F368_scaffold_5-int 2297 2862" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20214785..20214805 /note="source:CACAO_M_E42395_F3_scaffold_5 4514 4536" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20214806..20215060) /note="source:CACAO_M_E41138_F98_scaffold_5 2517 2771" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20215061..20217798 /note="source:CACAO_M_E42905_F98_scaffold_5 1 2738" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20227360..20228336) /note="source:CACAO_M_E36454_F98_scaffold_5 1 977" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20228718..20230096) /note="source:CACAO_M_S_E7818_F60_scaffold_2 5808 7120" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20235428..20236668 /note="source:CACAO_M_S_E7818_F60_scaffold_2 18548 19810" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20237133..20237928 /note="source:CACAO_M_S_E7818_F60_scaffold_2 21829 22689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20238892..20241992 /note="source:CACAO_M_E42911_F15_scaffold_5 1 3101" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20243118..20243552 /note="source:INTACT597_F267_scaffold_2-int 8971 9391" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20243906..20244272 /note="source:INTACT224_F176_scaffold_8-int 2982 3357" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20244348..20245170 /note="source:INTACT224_F176_scaffold_8-int 3358 4181" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20245266..20245544 /note="source:scaffold_3_CACTA_0382 857 1136" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20246502..20249119) /note="source:CACAO_M_S_E18399_F231_scaffold_3 1 2723" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20253237..20256417) /note="source:CACAO_M_S_E64023_F13_scaffold_5 5813 9000" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20257927..20257995) /note="source:scaffold_3_CACTA_0382 2278 2345" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20258021..20259644) /note="source:INTACT224_F176_scaffold_8-int 2313 3272" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20260103..20260642) /note="source:CACAO_M_S_E7818_F60_scaffold_2 5881 6404" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20261919..20262688 /note="source:CACAO_M_E5899_F5_scaffold_2 21808 22554" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(20264741..20271854) /locus_tag="TCM_023945" /note="dbxref CacaoGD:Thecc1EG023945" mRNA complement(join(20264741..20265347,20267222..20267451, 20268519..20268868,20268944..20269249)) /locus_tag="TCM_023945" /product="2,4-dienoyl-CoA reductase isoform 2" /inference="alignment:exonerate- protein:2:ricco:30180.m001063" /inference="similar to AA sequence:ricco:30180.m001063" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1186t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4781t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13831t2" mRNA complement(join(20264763..20265347,20265996..20266092, 20266186..20266237,20267106..20267148,20267222..20267451, 20268519..20268898,20271420..20271854)) /locus_tag="TCM_023945" /product="2,4-dienoyl-CoA reductase, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30180.m001063" /inference="similar to AA sequence:ricco:30180.m001063" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4781t1" CDS complement(join(20265069..20265347,20265996..20266092, 20266186..20266237,20267106..20267148,20267222..20267451, 20268519..20268898,20271420..20271433)) /locus_tag="TCM_023945" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30180.m001063" /codon_start=1 /product="2,4-dienoyl-CoA reductase, putative isoform 1" /protein_id="EOY08788.1" /db_xref="TAIR:AT3G55290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C5MQH0" /translation="MEVSSFTVCLTDQLLVFAMAEQQLEPWAYLSGKVVMVTGASSGL GREFCLDLGKAGCRIVAAARRVDRLKSLCDEINCLTFPSSKPQPSGPRAVAVELDVCA KGATIQSSVKTAWDAFGRIDSLINNAGIRGNVKNPMELSEEEWNQTIKTNLTGSWLVS KYVCMHMLDANQGGSIINISSIAGLNRGQLPGGVAYAASKAGLIAMTKLTFDARLSLE YQSFCGVCNPTQLLPPVMVRCRRNLRMETGLSTDKISELDELAVWFSSSFLLERSMAL ELGAHKIRVNSISPGLFKSEITQGLMKKDWLTNVATRTAPLRTFGTSDPALTSLVRYL IHDSSEYVSGNMFIVDAGVTLPGIPIFSSL" CDS complement(join(20265069..20265347,20267222..20267451, 20268519..20268858)) /locus_tag="TCM_023945" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30180.m001063" /codon_start=1 /product="2,4-dienoyl-CoA reductase isoform 2" /protein_id="EOY08789.1" /db_xref="TAIR:AT3G55290.2" /db_xref="UniProtKB/TrEMBL:UniRef50_C5MQH0" /translation="MAEQQLEPWAYLSGKVVMVTGASSGLGREFCLDLGKAGCRIVAA ARRVDRLKSLCDEINCLTFPSSKPQPSGPRAVAVELDVCAKGATIQSSVKTAWDAFGR IDSLINNAGIRGNVKNPMELSEEEWNQTIKTNLTGSWLVSKYVCMHMLDANQGGSIIN ISSIAGLNRGQLPGGVAYAASKAGLIAMTKSMALELGAHKIRVNSISPGLFKSEITQG LMKKDWLTNVATRTAPLRTFGTSDPALTSLVRYLIHDSSEYVSGNMFIVDAGVTLPGI PIFSSL" mobile_element complement(20269425..20269586) /note="source:CACAO_M_S_E66657_F76_scaffold_5 8276 8416" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20270816..20270883) /note="source:INTACT224_F176_scaffold_8-int 2488 2554" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20273450..20274089) /note="source:INTACT224_F176_scaffold_8-int 16244 16881" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20275011..20275070 /note="source:CACAO_M_E5899_F5_scaffold_2 8904 8963" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20278090..20278352 /note="source:INTACT410F_F357_scaffold_4-int 9765 10029" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20278276..20278389) /note="source:INTACT224_F176_scaffold_8-int 2475 2587" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20280834..20288141 /note="source:CACAO_M_E36333_F12_scaffold_5 1 7297" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20288133..20288204 /note="source:INTACT176_F12_scaffold_8-int 12390 12442" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20288189..20289217) /note="source:CACAO_M_E69800_F12_scaffold_9 9703 10731" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20289218..20289253) /note="source:CACAO_M_E3248_F5_scaffold_1 6078 6113" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20293053..20293446 /note="source:INTACT189_F49_scaffold_5-int 17863 18253" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20293446..20293662 /note="source:INTACT189_F49_scaffold_5-int 18356 18572" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20293831..20294100 /note="source:CACAO_M_E43348_F5_scaffold_5 27231 27500" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 20296167..20298859 /locus_tag="TCM_023948" /note="dbxref CacaoGD:Thecc1EG023948" mRNA join(20296167..20296907,20297765..20297868, 20298255..20298423,20298501..20298859) /locus_tag="TCM_023948" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.11 coverage" CDS join(20296693..20296907,20297765..20297868, 20298255..20298423,20298501..20298681) /locus_tag="TCM_023948" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08790.1" /translation="MYVSTSRCQPFWLVLGHGLNKGGGATLALEVAVLLLLPNYCAVC SSPSTFNVILTMIQLDLYGIPTGGSTPSDIEANPKREGKEHVMAITLSSGSEVGSSNQ AETQDVLVKVDKFILLVDFVVLDIEEVKGVPIMLRRPFLHTAKAFINVEKKELTLRVQ IISVTSEVFIENHRKDPLETPLVAKSERDDDEFFMYVHMLDVPSRVLRTQFKSLDFSS TSSF" mobile_element complement(20304344..20304572) /note="source:scaffold_8_CACTA_0859 17177 17410" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20304886..20304969) /note="source:CACAO_M_E58324_F9_scaffold_9 1074 1165" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20305144..20305996 /note="source:INTACT595F_F13_scaffold_4-int 2445 3292" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20305993..20308957 /note="source:INTACT88_F12_scaffold_4-int 1267 4203" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20308951..20309200 /note="source:CACAO_M_E32900_F13_scaffold_4 3356 3628" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20309683..20309791) /note="source:CACAO_M_E3248_F5_scaffold_1 16963 17072" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20309709..20310429 /note="source:INTACT296_F13_scaffold_9-int 13740 14447" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20310293..20310452) /note="source:CACAO_M_E12463_F12_scaffold_3 2909 3068" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20310479..20311508) /note="source:scaffold_8_CACTA_0859 16513 17533" /mobile_element_type="transposon:TIR/CACTA" gene 20313178..20314100 /locus_tag="TCM_023950" /note="dbxref CacaoGD:Thecc1EG023950" mRNA join(20313178..20313255,20313757..20314100) /locus_tag="TCM_023950" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.69 coverage" CDS join(20313201..20313255,20313757..20313911) /locus_tag="TCM_023950" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08791.1" /translation="MTSYVRFLKNILSKKRKLVSDSRATSEVFMESQPVDPFKVSLIS ESEPNNEKVIECVNDLNFPSRVLGT" mobile_element 20314269..20315298 /note="source:INTACT139F_F15_scaffold_2-int 7690 8721" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20316208..20317374 /note="source:INTACT139F_F15_scaffold_2-int 9345 10511" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20318224..20318400) /note="source:CACAO_M_S_E5046_F335_scaffold_1 1710 1886" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20318669..20319468) /note="source:CACAO_M_E58324_F9_scaffold_9 1 710" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20320656..20320669) /note="source:CACAO_M_E45017_F15_scaffold_6 2295 2311" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20320670..20323421 /note="source:CACAO_M_E42924_F15_scaffold_5 1 2752" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20325510..20327029 /note="source:CACAO_M_S_E64608_F12_scaffold_5 10542 12054" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20327013..20327173 /note="source:INTACT901F_F95_scaffold_6-int 8394 8554" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20327032..20338035) /note="source:INTACT230_F178_scaffold_3-int 1 13071" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20338036..20344567) /note="source:CACAO_M_E42530_F72_scaffold_5 1 6508" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20345205..20346217 /note="source:scaffold_8_CACTA_0859 16927 17937" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20351442..20352880 /note="source:CACAO_M_E58324_F9_scaffold_9 1 1447" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 20353666..20355084 /locus_tag="TCM_023954" /note="dbxref CacaoGD:Thecc1EG023954" mRNA join(20353666..20354210,20354600..20355084) /locus_tag="TCM_023954" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" mobile_element 20353820..20353878 /note="source:CACAO_M_E52253_F12_scaffold_7 1070 1126" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(20353909..20354210,20354600..20355005) /locus_tag="TCM_023954" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08792.1" /translation="MASTNFIQERQSIMRPLLFKVENYPFWRMRFENFIQFIDLDIWD IIVDGPHTFNKTVNGVKHIKIRIEWDDKDKKYRLLNHKTLIAILCAFSESEFNGVAIN DIALKVVKQSDEKSLRSDNEKEDDEEITLLTIRFNRFLRNKQVNRRFFKKEKPRRDIR RDMPKDDQEIENIICYQKYPKDSKKKAMIASCSDNDESQNKEEKEATKLCSMVLDHPM DDEDAESSKQEKNLQVS" mobile_element 20358757..20359331 /note="source:CACAO_M_E1841_F5_scaffold_1 25205 25802" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20359255..20359405) /note="source:scaffold_3_CACTA_0388 7999 8151" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20359355..20359997) /note="source:CACAO_M_S_E5046_F335_scaffold_1 17487 18135" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20359998..20362999) /note="source:CACAO_M_E9677_F7_scaffold_2 9860 12852" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20362994..20363442) /note="source:CACAO_M_S_E5046_F335_scaffold_1 17043 17492" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20363443..20374475) /note="source:INTACT213F_F15_scaffold_3-int 1 11012" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20374477..20376345) /note="source:CACAO_M_S_E5046_F335_scaffold_1 15146 17046" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20376341..20377805) /note="source:CACAO_M_S_E5046_F335_scaffold_1 2621 4140" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20380337..20380914 /note="source:CACAO_M_E1841_F5_scaffold_1 25194 25801" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20381846..20382465) /note="source:CACAO_M_S_E83372_F14_scaffold_6 4134 4753" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20382566..20382763 /note="source:INTACT280_F60_scaffold_5-int 642 839" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20382764..20385395 /note="source:CACAO_M_E42944_F144_scaffold_5 1 2616" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20385396..20386255) /note="source:CACAO_M_E43672_F60_scaffold_5 1 860" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20389523..20390032) /note="source:CACAO_M_E1841_F5_scaffold_1 16098 16605" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20390102..20390254 /note="source:CACAO_on_E279_scaffold_9 6886 7038" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 20390357..20390413 /note="source:CACAO_M_E5899_F5_scaffold_2 20737 20793" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20390800..20391255) /note="source:CACAO_M_E1841_F5_scaffold_1 8387 8852" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20391272..20391369) /note="source:CACAO_M_E1841_F5_scaffold_1 22948 23057" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 20392280..20399598 /locus_tag="TCM_023958" /note="dbxref CacaoGD:Thecc1EG023958" mRNA join(20392280..20392462,20392538..20392628, 20392775..20392979,20393148..20393411,20393502..20393631, 20393728..20393883,20399310..20399598) /locus_tag="TCM_023958" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024481t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete" CDS join(20392419..20392462,20392538..20392628, 20392775..20392979,20393148..20393411,20393502..20393631, 20393728..20393863) /locus_tag="TCM_023958" /note="paralog of Thecc1EG024481t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08793.1" /translation="MYVSNMTAENRLLIRCWIIVPIAITWVTKKPTALWWEITLNRLD LVIGNRDWLIAKVTTGARGVLKVDEADQGKAVNRFAVLGAMDYDNQLGHVKQRQTECV NSDQVGNNFSSVNRNLTHAKVAECWQTGADTNDSVEQVGDFDGVKWAMEVGHMTVRKI KKKNNRKLEDRLSVVAVHGGEKVSDGGENSSKGAVQLSQPINSEQRSAGNASAKKPVA STSEMSEGTSSIPSHAAHVGRDGHLMKMRKSDSEVPYILTKDVSSKEDEISKTDRVNG DSTSWYFPTNTYP" mobile_element 20396742..20399733 /note="source:CACAO_M_E65798_F143_scaffold_9 1 2989" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20399795..20402643) /note="source:CACAO_M_E52654_F15_scaffold_7 1 2853" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20402644..20404365 /note="source:CACAO_M_S_E145698_F277_scaffold_11 3061 4835" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20405079..20405159) /note="source:CACAO_M_E3626_F245_scaffold_1 2944 3025" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20406200..20406582) /note="source:CACAO_M_E49857_F85_scaffold_7 20674 21053" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20406566..20411418 /note="source:CACAO_M_S_E84840_F51_scaffold_7 3367 8243" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20411401..20414095) /note="source:CACAO_M_S_E99975_F143_scaffold_9 3 2678" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 20411761..20415573 /locus_tag="TCM_023960" /note="dbxref CacaoGD:Thecc1EG023960" mRNA join(20411761..20411866,20412546..20412614, 20414350..20414719,20414864..20415573) /locus_tag="TCM_023960" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036738t1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.11 coverage" CDS join(20411852..20411866,20412546..20412614, 20414350..20414719,20414864..20415321) /locus_tag="TCM_023960" /note="paralog of Thecc1EG036738t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08794.1" /translation="MKRSEVVSSLVRVRISYPRTKGRSTPVINWILVELRMKSKGFHL ASKCLCCCSEESLLHVIWEGTVAQQVWNFFAKFFQIYVHNPQNVLHILHPWYYSGDYV KPGHIRILLPLLIMWFLWVERNDAKHKELKMYPNRVIWRIMRMLRQLYQDGSSKEAFQ NAASGGVLRDHTSTMIFGFFENFGPYSSIQAELMALHRGLLLCNEYNISRVWIEMDAK AIVQMLHKGHKGSSRTRYLLSSIHQCLSGISYRISHIHRQGNQAVDYLSNKGHTHQNL QVFSEAEGELKGMIRLDKSNLPYVHFK" mobile_element complement(20415601..20416671) /note="source:CACAO_M_E4676_F9_scaffold_2 10678 11747" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20416673..20416837 /note="source:INTACT189_F49_scaffold_5-int 17860 18023" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20416834..20417741 /note="source:CACAO_M_E5899_F5_scaffold_2 19648 20533" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20418000..20418104) /note="source:CACAO_M_S_E83691_F15_scaffold_6 2747 2856" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20418865..20419734 /note="source:CACAO_M_S_E32752_F12_scaffold_4 2469 3336" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20419727..20420283 /note="source:CACAO_M_S_E32752_F12_scaffold_4 14985 15507" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20421136..20421724 /note="source:CACAO_M_E5899_F5_scaffold_2 22111 22697" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20421714..20422271 /note="source:INTACT189_F49_scaffold_5-int 18016 18572" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20423982..20424768 /note="source:INTACT189_F49_scaffold_5-int 13636 14394" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20425125..20427308 /note="source:INTACT189_F49_scaffold_5-int 15352 17570" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20427396..20427537 /note="source:INTACT189_F49_scaffold_5-int 17567 17765" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20427538..20430531 /note="source:CACAO_M_S_E65278_F7_scaffold_5 1 2973" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20431941..20439949 /note="source:CACAO_M_S_E65068_F306_scaffold_5 2171 15676" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(20436035..20436830) /locus_tag="TCM_023962" /note="dbxref CacaoGD:Thecc1EG023962" mRNA complement(20436035..20436830) /locus_tag="TCM_023962" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031818t1" /inference="similar to AA sequence:frave:gene32900" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.42 coverage" CDS complement(20436141..20436767) /locus_tag="TCM_023962" /note="dbxref frave:gene32900; paralog of Thecc1EG031818t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08795.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C9U3" /translation="MSVFDKDAYVLIDFGLDRSYVSTTFASFSDINLSPLEEEIVVYT LQREQLVRNTYYRDYGIRVGEEEFRADLIPLKIRDFDLILGMDWLTAHQTNVDCFRKE VVLQNSKGVEVVFAGERRVLPSCVISTIKALKLVQKGYPAYLAHVIVTSKGVPKLEDV PIVNEFSDVFLDELPGLLLIENSNSLLIYFKDGLEFCYAWCGAKGLKD" mobile_element 20439840..20439964 /note="source:scaffold_5_CACTA_0602 1 121" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20439947..20440374) /note="source:INTACT763_F7_scaffold_4-int 6159 6566" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20440950..20441014 /note="source:INTACT646_F284_scaffold_3-int 1140 1201" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20441019..20442881) /note="source:CACAO_M_S_E15173_F4_scaffold_2 12547 14401" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20442879..20443025 /note="source:INTACT504_F7_scaffold_1-int 4320 4466" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20443022..20443413 /note="source:CACAO_M_S_E32752_F12_scaffold_4 2465 2860" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20452432..20453020 /note="source:CACAO_M_S_E32752_F12_scaffold_4 4296 4882" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20452939..20453033 /note="source:scaffold_5_CACTA_0591 15372 15459" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20454362..20454448 /note="source:CACAO_M_E9677_F7_scaffold_2 5147 5232" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(20455232..20459790) /locus_tag="TCM_023965" /note="dbxref CacaoGD:Thecc1EG023965" mRNA complement(join(20455232..20455580,20456938..20456992, 20458371..20458693,20459631..20459790)) /locus_tag="TCM_023965" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013457t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete" CDS complement(join(20455470..20455580,20456938..20456992, 20458371..20458693,20459631..20459672)) /locus_tag="TCM_023965" /note="paralog of Thecc1EG013457t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08796.1" /translation="MFEEKKKKVKNTSLAMVDEHFEFVIGELDFAEVINYLCKGNGEW KMSKGLLVSFKGNQLYEAYKCWLYFIAARVLLVKHVSDITKDRTLLLYCILIRKAIDL GRTLYNTILRFANTPREGIWTTWLKILWVLVLLGGIVKVWRCTYGTCAMFSSNNSSDT LHSTSKASLDSTVRSQ" mobile_element complement(20455999..20456464) /note="source:CACAO_M_E58601_F7_scaffold_9 10214 10682" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20456464..20456937 /note="source:INTACT146F_F14_scaffold_2-int 4474 4842" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20459632..20461307 /note="source:INTACT103_F9_scaffold_4-int 17507 19203" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20461882..20462683 /note="source:INTACT26_F13_scaffold_9-int 3061 3849" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20464530..20465847) /note="source:CACAO_M_E42514_F40_scaffold_5 19365 20680" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20465948..20466725) /note="source:CACAO_M_E23144_F272_scaffold_4 9329 10107" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20467080..20468069) /note="source:CACAO_M_E23144_F272_scaffold_4 8149 9157" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20475657..20475720) /note="source:CACAO_M_E12463_F12_scaffold_3 4583 4637" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20477596..20480556 /note="source:CACAO_M_E42968_F7_scaffold_5 1 2961" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20481339..20488214 /note="source:INTACT287_F193_scaffold_2-int 1 6905" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20488213..20488856 /note="source:CACAO_M_E65323_F12_scaffold_9 7736 8374" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20488391..20489142 /note="source:INTACT563_F255_scaffold_10-int 35 750" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20489963..20490140 /note="source:CACAO_M_E65323_F12_scaffold_9 9093 9275" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20490281..20491027 /note="source:INTACT95_F143_scaffold_9-int 1466 2203" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20491012..20491358 /note="source:CACAO_M_E42514_F40_scaffold_5 17359 17718" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20492035..20492195 /note="source:INTACT39F_F22_scaffold_1-int 5159 5329" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20492618..20492760 /note="source:INTACT39F_F22_scaffold_1-int 5451 5593" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20492754..20494246 /note="source:CACAO_M_S_E65837_F7_scaffold_5 1506 3005" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20494247..20495011 /note="source:CACAO_M_S_E64023_F13_scaffold_5 8235 9001" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20495014..20495190) /note="source:INTACT537_F22_scaffold_2-int 3029 3205" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20495208..20495939 /note="source:INTACT126_F14_scaffold_3-int 15406 16139" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20499376..20499555 /note="source:CACAO_M_E2975_F12_scaffold_1 95 267" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20501855..20502383) /note="source:CACAO_M_S_E64832_F14_scaffold_5 3648 4177" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20502392..20502656 /note="source:INTACT146F_F14_scaffold_2-int 4133 4361" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20502657..20505616 /note="source:CACAO_M_E13147_F230_scaffold_3 1 2911" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20505617..20505820) /note="source:INTACT146F_F14_scaffold_2-int 13540 13746" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20505821..20506938) /note="source:INTACT293_F14_scaffold_5-int 8776 9892" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20508173..20508631 /note="source:CACAO_M_E32900_F13_scaffold_4 2580 3038" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20508675..20509063) /note="source:INTACT146F_F14_scaffold_2-int 13556 13884" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20509061..20510683 /note="source:INTACT595F_F13_scaffold_4-int 2445 4051" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20510686..20511760) /note="source:CACAO_M_E10693_F272_scaffold_2 6680 7756" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20511756..20512692 /note="source:CACAO_M_E24592_F195_scaffold_4 2954 3873" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20512689..20512735) /note="source:CACAO_M_S_E64832_F14_scaffold_5 11210 11256" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20512838..20513197 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3234 3596" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20513224..20515974 /note="source:CACAO_M_S_E65247_F233_scaffold_5 1 2751" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20515893..20515985) /note="source:CACAO_M_E42514_F40_scaffold_5 14541 14631" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20515975..20516577) /note="source:CACAO_M_E24592_F195_scaffold_4 19685 20281" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20516705..20517022 /note="source:CACAO_M_E35511_F5_scaffold_5 13179 13494" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20517025..20517084 /note="source:CACAO_M_E35511_F5_scaffold_5 13614 13675" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20517063..20517380 /note="source:CACAO_M_E35511_F5_scaffold_5 2649 2960" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20523389..20523444) /note="source:INTACT1218F_F372_scaffold_6-int 7263 7317" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20523660..20526164) /note="source:INTACT289_F14_scaffold_4-int 7618 10147" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20526166..20529026) /note="source:INTACT126_F14_scaffold_3-int 10487 13354" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20529019..20529323 /note="source:CACAO_M_E42514_F40_scaffold_5 14549 14853" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20530442..20530654) /note="source:CACAO_M_E69217_F98_scaffold_9 8610 8822" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20531331..20533317) /note="source:CACAO_M_E45504_F98_scaffold_6 6271 8257" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20534274..20535951) /note="source:CACAO_M_E45504_F98_scaffold_6 3554 5232" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20535942..20542424 /note="source:INTACT470_F80_scaffold_3-int 2502 9008" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20541003..20542673 /note="source:scaffold_5_CACTA_0601 4549 6210" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20545390..20545480) /note="source:CACAO_M_E3884_F22_scaffold_1 13089 13181" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20548900..20550353 /note="source:INTACT88_F12_scaffold_4-int 12285 13487" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20550367..20553379) /note="source:CACAO_M_E10340_F324_scaffold_2 1 3019" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20553427..20553587 /note="source:CACAO_M_E3654_F4_scaffold_1 583 767" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20553446..20553659) /note="source:CACAO_M_E42959_F4_scaffold_5 1006 1148" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20561318..20563175 /note="source:CACAO_M_S_E65257_F4_scaffold_5 1 1858" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20564619..20567206) /note="source:CACAO_M_E3248_F5_scaffold_1 16951 18837" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20565515..20567213 /note="source:INTACT296_F13_scaffold_9-int 12728 14454" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20567646..20570593 /note="source:CACAO_M_E43015_F44_scaffold_5 1 2939" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20570959..20571228 /note="source:CACAO_M_E1841_F5_scaffold_1 22975 23244" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20571282..20574270 /note="source:CACAO_M_S_E65265_F7_scaffold_5 1 2989" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 20578558..20585876 /locus_tag="TCM_023972" /note="dbxref CacaoGD:Thecc1EG023972" mRNA join(20578558..20578623,20581735..20583050, 20583130..20583160,20583263..20583356,20583544..20583820, 20583909..20583994,20584124..20584281,20584375..20584451, 20584785..20585731) /locus_tag="TCM_023972" /product="Auxin efflux carrier family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s03540.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012854t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s03450.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc587t3" gene 20578558..20580940 /locus_tag="TCM_023973" /note="dbxref CacaoGD:Thecc1EG023973" mRNA join(20578558..20578817,20578986..20579087, 20579173..20579977,20580567..20580940) /locus_tag="TCM_023973" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(20578590..20578817,20578986..20579087, 20579173..20579643) /locus_tag="TCM_023973" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08800.1" /translation="MSTTRVSVLVNGNPTRQFGMKRRLRQDCPLSPFLFNITVEVLSN MIKRAKQMGICEEIRIGTQELKISHLQFVDDIVGKVPTTCLGLLLRVNHNSMAFWNSI IEKMEGKLLLEMVKISTFGLTSGLKMALWLKSFRGFLRWPTTKIEELQIMEDMRRMCG DGIFLEKESFRLEVAQWDQLGNLLKDIQISKNLKDEMVWKSETNDLYSLKSFYKRLMA CIEKRDNVWKNVWVGLAPHRIEAFVWQLLHEKIKVKDKLVGKGLLQDN" CDS join(20578621..20578623,20581735..20583050, 20583130..20583160,20583263..20583356,20583544..20583820, 20583909..20583994,20584124..20584281,20584375..20584451, 20584785..20584851) /locus_tag="TCM_023972" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG012854t1" /codon_start=1 /product="Auxin efflux carrier family protein isoform 1" /protein_id="EOY08797.1" /db_xref="Phytozome:POPTR_0016s03450.1" /db_xref="TAIR:AT1G73590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B5TXD0" /translation="MSFSCHSLFHFLTKKIPENCEKNHTKCIPSSFSCEIISGFCILA LHIYLSSGFLLQYTMISATDLYHVLTAVVPLYVAMILAYGSVKWWKIFSPDQCSGINR FVALFAVPLLSFHFISTNNPYAMNLRFIAADTLQKIIVLVVLAIWSRTSSRGSLEWSI TLFSLSTLPNTLVMGIPLLKGMYGENSGSLMVQIVVLQCIIWYTLMLFLFEYRGARLL IAEQFPDTAGSIISFKVDSDIISLDGKEPLQTDAEVGEDGKLHVTVRKSTSSRSEIFS RRSHGPNSGVSLTPRPSNLTNAEIYSLQSSRNPTPRGSSFNHTDFYSMVNGKNISNVS PRQSNFGNLGFDEENGLGVFGNPGRANGNAYPAPTSAGIFSPVTGPGAKKKANGTDSG KDLHMFVWSSSASPVSEGGIHVFRGGEYGNDLGGVAHQKGINVNLSKSIWQFPTLNFK NVLFIGVTVFVLLNEGLGLENAFFRCASSGADYDEYGRDEFSFGNKQLTNGVDREGPV LSKLGSSSTTELHPKASAHAETKPSAMPPASVMTRLILIMVWRKLIRNPNTYSSLIGL TWSLVSFKWDIQMPAIIARSISILSDAGLGMAMFSLGLFMALQPRIIACGNTIAAFAM AVRFLTGPAVMAAASIAVGLRGVLLRIAIVQAALPQGIVPFVFAKEYNVHPDILSTGV IFGMLIALPITMVYYILLGL" mRNA join(20581585..20583025,20583544..20583820, 20583909..20583994,20584124..20584281,20584372..20584451, 20584785..20585622) /locus_tag="TCM_023972" /product="Auxin efflux carrier family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s03540.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012854t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s03450.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4894t2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc587t3" mRNA join(20581699..20583025,20583544..20583820, 20583909..20583994,20584124..20584281,20584375..20584451, 20584785..20585044,20585147..20585876) /locus_tag="TCM_023972" /product="Auxin efflux carrier family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s03540.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012854t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s03450.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc587t3; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc587t3" CDS join(20581906..20583025,20583544..20583820, 20583909..20583994,20584124..20584281,20584372..20584451, 20584785..20584851) /locus_tag="TCM_023972" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG012854t1" /codon_start=1 /product="Auxin efflux carrier family protein isoform 3" /protein_id="EOY08799.1" /db_xref="Phytozome:POPTR_0016s03450.1" /db_xref="TAIR:AT1G73590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7URM3" /translation="MISATDLYHVLTAVVPLYVAMILAYGSVKWWKIFSPDQCSGINR FVALFAVPLLSFHFISTNNPYAMNLRFIAADTLQKIIVLVVLAIWSRTSSRGSLEWSI TLFSLSTLPNTLVMGIPLLKGMYGENSGSLMVQIVVLQCIIWYTLMLFLFEYRGARLL IAEQFPDTAGSIISFKVDSDIISLDGKEPLQTDAEVGEDGKLHVTVRKSTSSRSEIFS RRSHGPNSGVSLTPRPSNLTNAEIYSLQSSRNPTPRGSSFNHTDFYSMVNGKNISNVS PRQSNFGNLGFDEENGLGVFGNPGRANGNAYPAPTSAGIFSPVTGPGAKKKANGTDSG KDLHMFVWSSSASPVSEGGIHVFRGGEYGNDLGGVAHQKDYDEYGRDEFSFGNKQLTN GVDREGPVLSKLGSSSTTELHPKASAHAETKPSAMPPASVMTRLILIMVWRKLIRNPN TYSSLIGLTWSLVSFKWDIQMPAIIARSISILSDAGLGMAMFSLGLFMALQPRIIACG NTIAAFAMAVRFLTGPAVMAAASIAVGLRGVLLRIAIVQQAALPQGIVPFVFAKEYNV HPDILSTGVIFGMLIALPITMVYYILLGL" CDS join(20581906..20583025,20583544..20583820, 20583909..20583994,20584124..20584281,20584375..20584451, 20584785..20584851) /locus_tag="TCM_023972" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG012854t1" /codon_start=1 /product="Auxin efflux carrier family protein isoform 2" /protein_id="EOY08798.1" /db_xref="Phytozome:POPTR_0016s03450.1" /db_xref="TAIR:AT1G73590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7URM3" /translation="MISATDLYHVLTAVVPLYVAMILAYGSVKWWKIFSPDQCSGINR FVALFAVPLLSFHFISTNNPYAMNLRFIAADTLQKIIVLVVLAIWSRTSSRGSLEWSI TLFSLSTLPNTLVMGIPLLKGMYGENSGSLMVQIVVLQCIIWYTLMLFLFEYRGARLL IAEQFPDTAGSIISFKVDSDIISLDGKEPLQTDAEVGEDGKLHVTVRKSTSSRSEIFS RRSHGPNSGVSLTPRPSNLTNAEIYSLQSSRNPTPRGSSFNHTDFYSMVNGKNISNVS PRQSNFGNLGFDEENGLGVFGNPGRANGNAYPAPTSAGIFSPVTGPGAKKKANGTDSG KDLHMFVWSSSASPVSEGGIHVFRGGEYGNDLGGVAHQKDYDEYGRDEFSFGNKQLTN GVDREGPVLSKLGSSSTTELHPKASAHAETKPSAMPPASVMTRLILIMVWRKLIRNPN TYSSLIGLTWSLVSFKWDIQMPAIIARSISILSDAGLGMAMFSLGLFMALQPRIIACG NTIAAFAMAVRFLTGPAVMAAASIAVGLRGVLLRIAIVQAALPQGIVPFVFAKEYNVH PDILSTGVIFGMLIALPITMVYYILLGL" mobile_element complement(20588116..20589246) /note="source:CACAO_M_S_E5046_F335_scaffold_1 1480 2627" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20589240..20589307 /note="source:scaffold_9_CACTA_0931 17039 17106" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20589308..20592142 /note="source:CACAO_M_E43023_F15_scaffold_5 1 2835" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20592143..20592217) /note="source:scaffold_3_CACTA_0382 1861 1929" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20592158..20592227 /note="source:scaffold_3_CACTA_0382 1861 1927" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20592638..20592716 /note="source:scaffold_3_CACTA_0388 9673 9751" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20592659..20593950) /note="source:CACAO_M_S_E5046_F335_scaffold_1 18272 19559" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20593475..20594060 /note="source:CACAO_M_E1841_F5_scaffold_1 25194 25801" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20599764..20604638 /note="source:CACAO_M_E12105_F316_scaffold_3 1 5389" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20603400..20605160) /note="source:CACAO_M_E57385_F197_scaffold_9 1 1808" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20606188..20609020 /note="source:CACAO_M_E43026_F78_scaffold_5 1 2833" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20614328..20615308) /note="source:CACAO_M_E9677_F7_scaffold_2 9862 10858" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20620907..20620951) /note="source:CACAO_M_E14227_F12_scaffold_3 7094 7131" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20620952..20623924 /note="source:CACAO_M_S_E65278_F7_scaffold_5 1 2973" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20628715..20631446 /note="source:CACAO_M_E43033_F15_scaffold_5 1 2732" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20631337..20631467) /note="source:CACAO_M_S_E50960_F369_scaffold_4 6914 7050" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20633840..20634768) /note="source:CACAO_M_E11098_F15_scaffold_2 6238 7033" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20638948..20639842) /note="source:CACAO_M_E1841_F5_scaffold_1 15772 16669" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20641744..20649229 /note="source:INTACT595_F266_scaffold_7-int 950 8446" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20649195..20650886) /note="source:INTACT695_F301_scaffold_5-int 1930 3596" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20652053..20652241) /note="source:INTACT183F_F349_scaffold_3-int 6814 6980" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20652804..20657059) /note="source:CACAO_M_S_E98116_F164_scaffold_8 7552 11814" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20653464..20656416 /note="source:CACAO_M_E43043_F33_scaffold_5 1 2953" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20658523..20658973 /note="source:CACAO_M_E35511_F5_scaffold_5 8742 9194" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20658974..20661727) /note="source:CACAO_M_E43033_F15_scaffold_5 1 2732" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20661728..20664138) /note="source:CACAO_M_E3654_F4_scaffold_1 5419 7834" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(20664132..20665566) /note="source:CACAO_M_E3654_F4_scaffold_1 6440 7882" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20665979..20667283 /note="source:CACAO_M_E9677_F7_scaffold_2 9865 11209" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20667298..20668768) /note="source:CACAO_M_E65050_F7_scaffold_9 18749 20217" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20669630..20680184) /note="source:CACAO_M_E57660_F369_scaffold_9 1 17679" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20680887..20680957) /note="source:CACAO_M_E43428_F369_scaffold_5 1259 1331" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20681564..20682910 /note="source:CACAO_M_E52278_F17_scaffold_7 1382 2764" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20687829..20687890) /note="source:CACAO_M_E4753_F17_scaffold_2 7043 7104" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20689302..20691295) /note="source:scaffold_2_CACTA_0262 6540 8555" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20691041..20691326) /note="source:INTACT224_F176_scaffold_8-int 4948 5238" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20691473..20692117) /note="source:INTACT597_F267_scaffold_2-int 5753 6403" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20694655..20694722) /note="source:INTACT741_F17_scaffold_3-int 325 393" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20696267..20696509) /note="source:CACAO_M_E72867_F9_scaffold_10 22755 23022" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20700232..20700347 /note="source:scaffold_2_CACTA_0262 683 784" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20700947..20701001) /note="source:CACAO_Mariner_E180_scaffold_6 2707 2761" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(20702561..20703625) /note="source:CACAO_M_E639_F17_scaffold_1 2828 3911" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20703865..20703997) /note="source:INTACT93F_F345_scaffold_2-int 17672 17793" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20703998..20706806 /note="source:CACAO_M_E43057_F322_scaffold_5 1 2809" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20713863..20716535 /note="source:CACAO_M_E43058_F369_scaffold_5 1 2673" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20717187..20717285 /note="source:scaffold_2_CACTA_0262 695 787" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20722084..20723796 /note="source:CACAO_M_E43060_F60_scaffold_5 1 1713" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20725389..20731046 /note="source:INTACT694_F17_scaffold_5-int 1 5658" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20733565..20733633) /note="source:INTACT336_F12_scaffold_2-int 10130 10201" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20735082..20735190 /note="source:scaffold_2_CACTA_0262 5402 5518" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20735095..20735657 /note="source:CACAO_M_S_E7818_F60_scaffold_2 5125 5675" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20735897..20736161 /note="source:CACAO_M_S_E7818_F60_scaffold_2 5986 6236" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20736342..20736702 /note="source:CACAO_M_S_E7818_F60_scaffold_2 6241 6599" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20736832..20739516) /note="source:CACAO_M_S_E65716_F44_scaffold_5 7128 9808" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20742999..20745998 /note="source:CACAO_M_S_E1983_F7_scaffold_1 1 2994" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20746893..20749591 /note="source:CACAO_M_S_E6650_F369_scaffold_2 1 2708" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20749538..20749598) /note="source:CACAO_M_E4631_F369_scaffold_2 7837 7897" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20749770..20751682) /note="source:CACAO_M_E589_F323_scaffold_1 1552 3465" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20751784..20753288) /note="source:CACAO_M_E589_F323_scaffold_1 1 1498" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20754232..20756090 /note="source:CACAO_M_E43069_F4_scaffold_5 1 1859" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20756091..20756927 /note="source:CACAO_M_S_E7818_F60_scaffold_2 18281 19102" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20757169..20757430 /note="source:CACAO_M_S_E7818_F60_scaffold_2 19392 19650" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20757592..20757981 /note="source:CACAO_M_S_E7818_F60_scaffold_2 6226 6625" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20758241..20758771 /note="source:CACAO_M_S_E7818_F60_scaffold_2 6589 7117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20758445..20759112) /note="source:CACAO_M_E58601_F7_scaffold_9 8820 9523" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20760131..20768513) /note="source:INTACT224_F176_scaffold_8-int 4827 12374" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20768512..20769106 /note="source:INTACT103_F9_scaffold_4-int 11220 11816" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20769107..20770981) /note="source:CACAO_M_E59327_F15_scaffold_9 1079 2951" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20770982..20771448 /note="source:INTACT132_F12_scaffold_9-int 8904 9396" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20771549..20772276 /note="source:CACAO_M_E33870_F15_scaffold_4 505 1232" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20772377..20774235) /note="source:INTACT584_F15_scaffold_3-int 1 1869" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20774236..20775317) /note="source:CACAO_M_E1507_F15_scaffold_1 1 1083" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20775318..20777722 /note="source:CACAO_M_S_E4482_F7_scaffold_1 590 2994" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20777723..20778057) /note="source:INTACT224_F176_scaffold_8-int 5311 5645" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20778058..20778911 /note="source:CACAO_M_E4676_F9_scaffold_2 5480 6334" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20779873..20780836) /note="source:INTACT524_F2_scaffold_3-int 9413 10361" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20780837..20782858 /note="source:CACAO_M_E12989_F82_scaffold_3 1 2033" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20784384..20786377) /note="source:INTACT524_F2_scaffold_3-int 7421 9417" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20786378..20786586 /note="source:CACAO_M_S_E4591_F5_scaffold_1 18307 18519" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20786580..20786635) /note="source:CACAO_M_E58601_F7_scaffold_9 10206 10260" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20786641..20786888) /note="source:CACAO_M_E24592_F195_scaffold_4 20616 20860" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20787775..20787868) /note="source:scaffold_7_CACTA_0789 14823 14919" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20788136..20788510 /note="source:CACAO_M_S_E4591_F5_scaffold_1 19752 20143" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20788512..20789717 /note="source:CACAO_M_E35511_F5_scaffold_5 8743 9918" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20790217..20791560 /note="source:CACAO_M_S_E15173_F4_scaffold_2 5863 7207" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20791557..20792051 /note="source:INTACT95_F143_scaffold_9-int 15262 15761" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20792038..20794981) /note="source:scaffold_5_CACTA_0603 2553 5517" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20794981..20796047 /note="source:INTACT95_F143_scaffold_9-int 1898 2963" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20796421..20796598 /note="source:CACAO_M_E5326_F22_scaffold_2 22358 22536" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20796424..20796649 /note="source:INTACT405F_F91_scaffold_4-int 7350 7603" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20797905..20808230 /note="source:INTACT82F_F344_scaffold_2-int 1 10245" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20808441..20811862 /note="source:CACAO_M_E43088_F323_scaffold_5 1 3422" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20812430..20813464) /note="source:CACAO_M_E58819_F24_scaffold_9 22188 23250" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20817596..20820410 /note="source:CACAO_M_E33282_F13_scaffold_4 6354 7778" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20820405..20821792 /note="source:CACAO_M_E33282_F13_scaffold_4 6394 7778" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20821787..20822084 /note="source:CACAO_M_E33282_F13_scaffold_4 6394 6689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20822085..20824924 /note="source:CACAO_M_E43097_F15_scaffold_5 1 2840" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20824925..20826023 /note="source:CACAO_M_E33282_F13_scaffold_4 6680 7782" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20826015..20828729 /note="source:CACAO_M_E33282_F13_scaffold_4 6394 9079" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20828747..20830157) /note="source:CACAO_M_S_E16543_F3_scaffold_2 267 1695" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20832767..20835511 /note="source:CACAO_M_E12058_F3_scaffold_2 1411 4114" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20835507..20837435) /note="source:INTACT225_F54_scaffold_4-int 9040 10932" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20837537..20838527 /note="source:INTACT136_F150_scaffold_10-int 10305 11297" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20838528..20841368 /note="source:CACAO_M_E12058_F3_scaffold_2 4098 6974" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20841362..20841758) /note="source:CACAO_M_S_E16543_F3_scaffold_2 597 994" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 20842416..20847851 /locus_tag="TCM_023986" /note="dbxref CacaoGD:Thecc1EG023986" mRNA join(20842416..20842423,20847064..20847851) /locus_tag="TCM_023986" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" mobile_element 20842442..20843340 /note="source:INTACT82F_F344_scaffold_2-int 7681 8578" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20846236..20846392 /note="source:INTACT39F_F22_scaffold_1-int 5558 5691" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS 20847107..20847322 /locus_tag="TCM_023986" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08801.1" /translation="MSRLPWLWESGGAELLDCYYMEADRRVITMLTYSRDLRVLHSYS FAWWRVNNLLSTSIACKLSVLYKLILS" mobile_element 20848049..20850661 /note="source:scaffold_3_CACTA_0388 8453 10978" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20850700..20851223) /note="source:INTACT319_F3_scaffold_1-int 9152 9669" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 20851294..>20854975 /locus_tag="TCM_023987" /note="dbxref CacaoGD:Thecc1EG023987" mRNA join(20851294..20851357,20853514..20853576, 20854321..>20854975) /locus_tag="TCM_023987" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032938t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400029923" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is partial3" mobile_element complement(20851425..20852980) /note="source:CACAO_M_E12953_F322_scaffold_3 1255 2833" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20853081..20854329) /note="source:INTACT93F_F345_scaffold_2-int 15073 16321" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS 20854720..>20854974 /locus_tag="TCM_023987" /note="paralog of Thecc1EG032938t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08802.1" /db_xref="Phytozome:PGSC0003DMP400029923" /translation="MDECEDSFLRLETCLILAPILSLPNNSGGYVVYCDASKVGLGCV LMQNGRVIMYASRQLKRHKKNYSTHDLEMAMIVFALKIWRH" mobile_element 20855269..20856449 /note="source:INTACT126_F14_scaffold_3-int 14956 16139" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 20858576..20861532 /locus_tag="TCM_023988" /note="dbxref CacaoGD:Thecc1EG023988" mRNA join(20858576..20858904,20860437..20860839, 20861440..20861532) /locus_tag="TCM_023988" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is paralog medium, intron is none, protein is utrpoor_complete" CDS 20860438..20860704 /locus_tag="TCM_023988" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08803.1" /translation="MTPKKVKKARTSGNGFDRFKFVLTDALEHHTQALLQKSLVSEKG ITIPNLLYENSLCTIRDFKWETLCAQPKVAAMPAVREFYANAYE" mobile_element 20861889..20862056 /note="source:scaffold_2_CACTA_0262 6645 6812" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20864907..20866650 /note="source:CACAO_M_E43109_F15_scaffold_5 1 1744" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20867001..20867996 /note="source:CACAO_M_E43109_F15_scaffold_5 1745 2740" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20871149..20871194) /note="source:scaffold_2_CACTA_0262 743 789" /mobile_element_type="transposon:TIR/CACTA" gene 20873579..20874412 /locus_tag="TCM_023991" /note="dbxref CacaoGD:Thecc1EG023991" mRNA 20873579..20874412 /locus_tag="TCM_023991" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete" CDS 20873840..20874151 /locus_tag="TCM_023991" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08804.1" /translation="MLSTIFAFKINLMYRYIFMKILKLTPLTHLEITGYYITIFTCQW LIISSDTPTQLTSFTFVFSFLPCFSFFFLFYFFFFALFFFSFPSFSLLYHRSSLFFGL N" mobile_element 20876677..20879610 /note="source:CACAO_M_E43110_F72_scaffold_5 1 2934" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20879612..20880055 /note="source:CACAO_M_E22186_F143_scaffold_3 10555 11070" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20881068..20881979) /note="source:CACAO_M_E22484_F328_scaffold_3 15692 16601" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20882397..20882679 /note="source:scaffold_6_CACTA_0711 2133 2412" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20884225..20886994 /note="source:CACAO_M_E43112_F333_scaffold_5 1 2770" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20892153..20892486) /note="source:CACAO_M_E65323_F12_scaffold_9 12860 13192" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20892451..20892570 /note="source:CACAO_M_S_E101707_F15_scaffold_9 11770 11888" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20894337..20894508 /note="source:scaffold_6_CACTA_0711 2249 2419" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20895852..20898568 /note="source:CACAO_M_E43119_F369_scaffold_5 1 2717" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20898623..20901569) /note="source:CACAO_M_E887_F143_scaffold_1 1 2956" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20901530..20901578 /note="source:INTACT567_F258_scaffold_9-int 9228 9276" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20902002..20902281 /note="source:scaffold_6_CACTA_0711 1558 1843" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(20902270..20902854) /note="source:INTACT170_F12_scaffold_5-int 6223 6826" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20902851..20909688 /note="source:INTACT329_F199_scaffold_2-int 21 6428" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20908560..20910253) /note="source:INTACT597_F267_scaffold_2-int 8073 9764" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20909375..20909664) /note="source:scaffold_6_CACTA_0711 4769 6860" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20909665..20911794 /note="source:INTACT118_F5_scaffold_9-int 2762 4911" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20911795..20911850) /note="source:scaffold_6_CACTA_0711 4331 4768" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20911851..20911961 /note="source:CACAO_M_S_E144426_F33_scaffold_10 1 111" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20911949..20915214) /note="source:CACAO_M_E59623_F33_scaffold_9 1204 4481" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20913654..20924179 /note="source:CACAO_M_S_E120308_F33_scaffold_10 196 13409" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20916783..20923016) /note="source:CACAO_M_E59623_F33_scaffold_9 1196 7447" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20924295..20924937) /note="source:INTACT597_F267_scaffold_2-int 13009 13656" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20933918..20934025) /note="source:CACAO_M_E9677_F7_scaffold_2 5147 5254" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20934043..20934306 /note="source:CACAO_M_E58601_F7_scaffold_9 8819 9080" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20935552..20936364 /note="source:CACAO_M_E58601_F7_scaffold_9 10053 10875" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20936306..20936420) /note="source:INTACT212_F171_scaffold_10-int 4510 4635" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20938183..20948089) /note="source:INTACT363_F7_scaffold_9-int 1 9921" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20948090..20948200) /note="source:CACAO_M_S_E99975_F143_scaffold_9 1249 1361" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20948179..20949089) /note="source:INTACT1327F_F381_scaffold_8-int 6069 6978" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20955824..20956005 /note="source:CACAO_M_S_E5046_F335_scaffold_1 2618 2800" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20956006..20958652 /note="source:CACAO_M_S_E65394_F231_scaffold_5 1 2647" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20958661..20958876 /note="source:scaffold_4_CACTA_0494 14142 14358" /mobile_element_type="transposon:TIR/CACTA" mobile_element 20958890..20959756 /note="source:CACAO_M_S_E5046_F335_scaffold_1 3301 4140" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20959752..20959827 /note="source:CACAO_M_S_E5046_F335_scaffold_1 15146 15221" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20961273..20961975 /note="source:INTACT597_F267_scaffold_2-int 5756 6459" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20963801..20964639 /note="source:INTACT597_F267_scaffold_2-int 8071 8938" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20964031..20964754) /note="source:CACAO_M_E49857_F85_scaffold_7 20454 21051" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20964755..20965198 /note="source:CACAO_M_E33254_F15_scaffold_4 1 444" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20965201..20968440) /note="source:CACAO_M_E84925_F82_scaffold_10 1 3307" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20968441..20970830 /note="source:CACAO_M_S_E5296_F15_scaffold_1 441 2832" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20970831..20975252 /note="source:INTACT597_F267_scaffold_2-int 9232 13712" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20976743..20977600 /note="source:CACAO_M_E5326_F22_scaffold_2 21805 22673" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20977483..20977617 /note="source:INTACT405F_F91_scaffold_4-int 7468 7603" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 20977632..20980403 /note="source:CACAO_M_S_E18399_F231_scaffold_3 4 2865" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20980407..20987978) /note="source:CACAO_M_E4704_F345_scaffold_2 1 7630" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20987902..20987988 /note="source:CACAO_M_E12953_F322_scaffold_3 2754 2844" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20987976..20988073 /note="source:INTACT1421F_F389_scaffold_9-int 8883 8987" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20988628..20988738 /note="source:INTACT753_F322_scaffold_5-int 8000 8102" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20988651..20988749) /note="source:CACAO_M_E24018_F98_scaffold_4 2004 2103" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20988728..20988923) /note="source:INTACT597_F267_scaffold_2-int 6432 6621" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20989865..20989931) /note="source:INTACT224_F176_scaffold_8-int 15359 15425" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20992038..20993088) /note="source:INTACT95_F143_scaffold_9-int 1917 2963" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20993086..20994479) /note="source:CACAO_M_S_E7818_F60_scaffold_2 5192 6636" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(20994576..20998618) /note="source:INTACT697_F302_scaffold_2-int 12851 16902" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 20998619..21001612 /note="source:CACAO_M_E43149_F7_scaffold_5 1 2994" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21001613..21002340) /note="source:INTACT697_F302_scaffold_2-int 12126 12855" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21002333..21002707) /note="source:CACAO_M_E43498_F302_scaffold_5 1 375" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21006336..21006486) /note="source:INTACT95_F143_scaffold_9-int 1370 1523" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21006579..21008436 /note="source:CACAO_M_E43151_F4_scaffold_5 1 1858" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21008437..21009003 /note="source:CACAO_M_S_E7818_F60_scaffold_2 5339 5903" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21009752..21010365 /note="source:INTACT95_F143_scaffold_9-int 430 1056" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21010361..21012033 /note="source:CACAO_M_S_E15173_F4_scaffold_2 5858 7528" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21012034..21020336 /note="source:INTACT510_F235_scaffold_5-int 1 8303" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21020337..21021480 /note="source:INTACT95_F143_scaffold_9-int 1809 2971" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21021469..21021642 /note="source:INTACT695_F301_scaffold_5-int 1049 1222" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21021908..21024202) /note="source:CACAO_M_E3509_F7_scaffold_1 3 2332" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21024498..21025802) /note="source:INTACT41F_F338_scaffold_1-int 2064 3364" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21025799..21026524 /note="source:CACAO_M_E58601_F7_scaffold_9 4945 5673" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21028416..21028818 /note="source:INTACT126_F14_scaffold_3-int 1 401" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21028826..21030244 /note="source:CACAO_M_E48538_F49_scaffold_6 1802 3239" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21030240..21031128) /note="source:CACAO_M_E69283_F22_scaffold_9 11847 12736" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21031127..21031924) /note="source:CACAO_M_E69283_F22_scaffold_9 11113 11894" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21031923..21032395) /note="source:CACAO_M_E47740_F12_scaffold_6 6251 6721" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21032392..21033751 /note="source:scaffold_2_CACTA_0259 1677 3041" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21034085..21034943) /note="source:CACAO_M_S_E5046_F335_scaffold_1 15146 16002" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21034355..21039245 /note="source:CACAO_M_S_E14932_F233_scaffold_2 8101 12965" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21039246..21045177) /note="source:CACAO_M_E45234_F22_scaffold_6 2171 8103" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21045198..21045416) /note="source:CACAO_M_E44351_F22_scaffold_6 1373 1591" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21045417..21054355 /note="source:CACAO_M_E58684_F78_scaffold_9 1 8984" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21054367..21057192) /note="source:CACAO_M_E1192_F15_scaffold_1 1 2826" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21057095..21057206 /note="source:CACAO_M_E45017_F15_scaffold_6 2198 2311" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21057174..21057280 /note="source:CACAO_M_E294_F134_scaffold_1 4210 4298" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21057193..21057739) /note="source:INTACT41F_F338_scaffold_1-int 1336 1883" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21057737..21058435 /note="source:INTACT624_F277_scaffold_2-int 7212 7938" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21058436..21061524 /note="source:CACAO_M_E43169_F141_scaffold_5 1 3089" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21061525..21062303 /note="source:INTACT65_F13_scaffold_1-int 6733 7518" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21062298..21062440) /note="source:INTACT39F_F22_scaffold_1-int 5451 5593" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21062476..21062863 /note="source:INTACT215F_F14_scaffold_3-int 11162 11539" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21065974..21066318) /note="source:INTACT39F_F22_scaffold_1-int 3850 4198" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21067515..21068721 /note="source:CACAO_M_E58684_F78_scaffold_9 1653 2860" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21068717..21070162) /note="source:INTACT120_F22_scaffold_3-int 1 2132" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21070651..21070767) /note="source:CACAO_M_E3884_F22_scaffold_1 13089 13208" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21071208..21076969 /note="source:CACAO_M_E43175_F215_scaffold_5 1 5762" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21082555..21094633 /note="source:INTACT570_F260_scaffold_5-int 1 12079" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21094955..21096912) /note="source:CACAO_M_S_E34255_F369_scaffold_4 788 2746" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21096921..21105199 /note="source:CACAO_M_E42395_F3_scaffold_5 6738 15069" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21106757..21109445 /note="source:CACAO_M_S_E52717_F144_scaffold_5 5 2633" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21109446..21110266) /note="source:INTACT649F_F368_scaffold_5-int 1138 1965" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21110271..21110332 /note="source:INTACT649F_F368_scaffold_5-int 1950 2014" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21114236..21114255) /note="source:INTACT1587F_F5_scaffold_9-int 1202 1217" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21114256..21124228 /note="source:INTACT611_F22_scaffold_5-int 1 9973" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21124368..21127003 /note="source:CACAO_M_E52239_F256_scaffold_7 19813 22439" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21127026..21129606) /note="source:CACAO_M_E13220_F12_scaffold_3 9806 12419" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21129473..21129628 /note="source:CACAO_M_E5326_F22_scaffold_2 4844 4995" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21131971..21132782) /note="source:CACAO_M_E13604_F90_scaffold_3 10390 11159" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21132783..21140193 /note="source:INTACT223_F175_scaffold_5-int 1 11080" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21140194..21141567) /note="source:CACAO_M_E13604_F90_scaffold_3 8963 10374" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21141571..21141720) /note="source:CACAO_M_E13604_F90_scaffold_3 8601 8750" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21142814..21142871) /note="source:CACAO_Mariner_E229_scaffold_9 10888 10946" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(21142824..21142889) /note="source:CACAO_M_S_E6055_F310_scaffold_2 9758 9824" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21144617..21147629) /note="source:CACAO_M_E42586_F54_scaffold_5 1 2938" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21147630..21152765 /note="source:INTACT1218F_F372_scaffold_6-int 4223 10862" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21152766..21155779) /note="source:CACAO_M_E42586_F54_scaffold_5 1 2938" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21158285..21158304 /note="source:INTACT39F_F22_scaffold_1-int 18312 18326" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21158305..21167855) /note="source:CACAO_M_E59541_F5_scaffold_9 687 10177" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21168783..21170747) /note="source:CACAO_M_E24592_F195_scaffold_4 19420 20971" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21170599..21170881 /note="source:CACAO_M_E5899_F5_scaffold_2 25283 25557" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21170748..21172165) /note="source:CACAO_M_E72867_F9_scaffold_10 1 1430" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21172188..21172417) /note="source:CACAO_M_E59541_F5_scaffold_9 1 230" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21172485..21172860 /note="source:INTACT649F_F368_scaffold_5-int 14116 14472" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21172926..21173417 /note="source:INTACT570_F260_scaffold_5-int 5320 5792" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21173418..21173503 /note="source:INTACT649F_F368_scaffold_5-int 789 877" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21173504..21174539 /note="source:INTACT570_F260_scaffold_5-int 5793 6790" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21174535..21174675 /note="source:INTACT649F_F368_scaffold_5-int 15988 16128" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21177145..21180354) /note="source:INTACT570_F260_scaffold_5-int 8610 11814" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21181535..21184231) /note="source:CACAO_M_E34534_F369_scaffold_5 1 2699" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21184796..21186108 /note="source:INTACT570_F260_scaffold_5-int 8735 9685" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21186161..21188059 /note="source:INTACT570_F260_scaffold_5-int 1354 3271" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 21191982..21203090 /locus_tag="TCM_024012" /note="dbxref CacaoGD:Thecc1EG024012" mRNA join(21191982..21191993,21198378..21198524, 21201378..21201530,21201972..21202043,21202123..21202190, 21202595..21203090) /locus_tag="TCM_024012" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018517t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" mobile_element 21192570..21193160 /note="source:INTACT41F_F338_scaffold_1-int 778 1368" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21193230..21193879) /note="source:INTACT224_F176_scaffold_8-int 11622 12269" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21194174..21195574) /note="source:INTACT224_F176_scaffold_8-int 17663 19038" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21195864..21196575) /note="source:CACAO_M_E1841_F5_scaffold_1 3099 3808" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(21201456..21201530,21201972..21202043, 21202123..21202190,21202595..21202955) /locus_tag="TCM_024012" /note="paralog of Thecc1EG018517t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08805.1" /translation="MWKWQCNQKSKGFYKAVEKLESSQHLDHATIALQPPRGPLKTHS ANEPLLTEVMTAPQPPIDLAQLHSVNEPVSSHHDGKHHDDADYGQHNEPGVHIHHDII VADGENVTHVNDVLDDTVAGDVTPQSVDAEGDHGPKVDVVVDASTEKEGDLHSVEAKE DHLPQVDAVVEVVAEGIGNLASVQAKGDDVP" gene complement(21203500..21207084) /locus_tag="TCM_024013" /note="dbxref CacaoGD:Thecc1EG024013" mRNA complement(join(21203500..21203551,21206161..21206247, 21206565..21206789,21207078..21207084)) /locus_tag="TCM_024013" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041947t1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.26 coverage" CDS complement(join(21203524..21203551,21206161..21206247, 21206565..21206740)) /locus_tag="TCM_024013" /note="paralog of Thecc1EG041947t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08806.1" /translation="MRIGLEKWVHACSPTRRYQLMTSNIVECVNSCLKHTRQMLITVL TKFIKDMFQRLFHDCKCKREAIEFCVDHYKTNVLVEGYKGPFACVEHVDGVL" gene 21203549..21204051 /locus_tag="TCM_024014" /note="dbxref CacaoGD:Thecc1EG024014" mRNA 21203549..21204051 /locus_tag="TCM_024014" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006372t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS 21203584..21203793 /locus_tag="TCM_024014" /note="paralog of Thecc1EG006372t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08807.1" /translation="MKIPNELRRYVEGDRLIYRKKWEDVNFILVPSNVGRHWVVAKID LVRWMIKVVDSARTLAVKANGVHAA" mobile_element complement(21207097..21214104) /note="source:INTACT10_F4_scaffold_6-int 1558 8573" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21214093..21214735) /note="source:CACAO_M_E35511_F5_scaffold_5 18029 18679" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21214377..21215477 /note="source:CACAO_M_E3884_F22_scaffold_1 7343 8346" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21215144..21216154) /note="source:CACAO_M_E35511_F5_scaffold_5 16401 17405" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21216141..21216524) /note="source:INTACT280_F60_scaffold_5-int 14932 15318" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21216471..21216713 /note="source:CACAO_M_E14537_F4_scaffold_3 7845 8087" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21216704..21218230 /note="source:CACAO_M_S_E98216_F4_scaffold_8 297 1853" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21218231..21218880) /note="source:CACAO_M_E41138_F98_scaffold_5 2122 2771" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21226243..21228284 /note="source:CACAO_M_E42369_F96_scaffold_5 694 2733" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(21228244..21230492) /locus_tag="TCM_024015" /note="dbxref CacaoGD:Thecc1EG024015" mRNA complement(join(21228244..21228917,21229000..21229047, 21229152..21229381,21229645..21229952,21230322..21230492)) /locus_tag="TCM_024015" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023058t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(21228762..21228917,21229000..21229047, 21229152..21229381,21229645..21229952,21230322..21230332)) /locus_tag="TCM_024015" /note="paralog of Thecc1EG023058t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08808.1" /translation="MTSRHSGQWVDGIYKGGESRKWGIMSDLSFASLMKLVEDVVGVN SKIHEIELHALIITARKLSRPIIKDDEDVALILLEQMNVSAVYVTIKECQTNVRSYEK VVQHGQHCDIEGDTSTLEDNTASNEGNENLFPTCEDRFDNNSDNGLDEWHDDSLNDDW LYDSDILICNNVKGKMELVGGGDGKCKEFLYAANSRCKKVKLKRALNMLALEKQFEIS VKRSCKGRFEVGCKDKAFKFGVRAIELLEGEY" gene 21228969..21235042 /locus_tag="TCM_024016" /note="dbxref CacaoGD:Thecc1EG024016" mRNA join(21228969..21229120,21232465..21232878, 21233718..21234508,21234656..21235042) /locus_tag="TCM_024016" /product="Basic helix-loop-helix DNA-binding superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30180.m001071" /inference="similar to AA sequence:Phytozome:POPTR_0006s03550.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaB_g12829t00001" CDS join(21229073..21229120,21232465..21232878, 21233718..21234140) /locus_tag="TCM_024016" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein" /protein_id="EOY08809.1" /db_xref="Phytozome:POPTR_0006s03550.1" /db_xref="TAIR:AT2G41130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80674" /translation="MSQANKSRSHQRWGYCLPNFIQKTLKTKTTESKSTEHTLISLPT SKTWSKKTPSSYSYHTTSMQPENSELYRFLAQNGVGSYGFPANLEFPVMQSFSSSSTY YPLEMSGVTTETTPQDRALAALKNHKEAEKRRRERINSHLNRLRSLLPCNSKTDKASL LAKVVQRVKELKQQTLELTELEAFPSEADEITVLSCDYTIDGRLIFKASLCCEDRSDL LPELIEILKSLHLKTLKAEMATLGGRIRNVLIVAADKDHSIESVHFLQNALKSLLERS NSSDRSKRRRVLDHKIMV" mobile_element complement(21235073..21235131) /note="source:CACAO_M_E42040_F98_scaffold_5 620 680" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21239513..21241232 /note="source:CACAO_M_E43213_F265_scaffold_5 1 1720" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 21241599..21242959 /locus_tag="TCM_024017" /note="dbxref CacaoGD:Thecc1EG024017" mRNA join(21241599..21241770,21241849..21242110, 21242509..21242959) /locus_tag="TCM_024017" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043545t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(21241715..21241770,21241849..21242110, 21242509..21242928) /locus_tag="TCM_024017" /note="paralog of Thecc1EG043545t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08810.1" /translation="MCIRHCETDFMLFHDLGIAGLPNVKLMVTYGGHWVDDTYKGGET RVRGVGSDLSFSGLVKLVQEVVGVNSHSNEIELHALLNHTVGVSCAVIRDDEDVESIL RDKRNSELEDDCEDDYVGEHDDYSEDDKDEHNDISDCNHVDGSTEHARTVVLEDVQCD DHATTIKLEDVEGANLIYDSPIALENGIRSPDDSNQERLNAGLSCQWIIPGVDMISFQ IVTTKESRLMDNHLYRRKVFPSKAKCK" mobile_element 21243220..21243829 /note="source:CACAO_M_S_E121934_F7_scaffold_10 4857 5461" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21243318..21244290) /note="source:INTACT167_F5_scaffold_2-int 10071 11064" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21244379..21244703 /note="source:CACAO_M_S_E121934_F7_scaffold_10 10249 10573" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21245093..21246321 /note="source:CACAO_M_E5627_F4_scaffold_2 14005 15250" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21247291..21249879 /note="source:CACAO_M_E48538_F49_scaffold_6 10554 13726" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21248640..21252239) /note="source:INTACT460_F49_scaffold_8-int 4228 7852" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21252240..21254473 /note="source:CACAO_M_S_E121934_F7_scaffold_10 1 2246" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21253345..21254598) /note="source:INTACT126_F14_scaffold_3-int 3795 5056" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21254599..21255476 /note="source:CACAO_M_E43215_F15_scaffold_5 1 878" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21255817..21257554 /note="source:CACAO_M_E43215_F15_scaffold_5 879 2616" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21257401..21257571) /note="source:INTACT167_F5_scaffold_2-int 8168 8334" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21257554..21258200 /note="source:INTACT904F_F49_scaffold_6-int 12985 13630" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21258200..21259981 /note="source:INTACT47_F12_scaffold_3-int 4730 6533" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21259955..21261176) /note="source:INTACT189_F49_scaffold_5-int 12460 13895" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21261269..21262112) /note="source:CACAO_M_S_E5046_F335_scaffold_1 18259 19105" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21262114..21264012) /note="source:CACAO_M_E48538_F49_scaffold_6 1025 3240" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(21265489..21285698) /locus_tag="TCM_024019" /note="dbxref CacaoGD:Thecc1EG024019" mRNA complement(join(21265489..21265517,21282401..21282681, 21284033..21284236,21285538..21285698)) /locus_tag="TCM_024019" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete" mobile_element complement(21265596..21268091) /note="source:CACAO_M_S_E119160_F14_scaffold_9 10820 13347" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21269496..21278062 /note="source:INTACT611_F22_scaffold_5-int 803 9973" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21278531..21278649) /note="source:CACAO_M_S_E83372_F14_scaffold_6 3582 3702" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(21282610..21282681,21284033..21284236, 21285538..21285549)) /locus_tag="TCM_024019" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08811.1" /translation="MGGKGLLPFLFNWAMPILSLLGHVHLYAYIYFSFLFSSFLFFFF SFFSFSLSLPFLSSRPAASCLSFFFVSHVLVLEVFIPLAWVSILRKQKPFG" mobile_element 21282687..21283030 /note="source:CACAO_M_E42514_F40_scaffold_5 17381 17718" /mobile_element_type="retrotransposon:LTR/Copia" gene 21283499..21284188 /locus_tag="TCM_024020" /note="dbxref CacaoGD:Thecc1EG024020" mRNA join(21283499..21283748,21283939..21284188) /locus_tag="TCM_024020" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete" CDS join(21283643..21283748,21283939..21284036) /locus_tag="TCM_024020" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08812.1" /translation="MKAEKAELRKAALLPFREERRANFVANLRVRRAALALVVENFVI ERQEVVADSESEREEEIMDSFCT" mobile_element 21284739..21288335 /note="source:CACAO_M_S_E119127_F246_scaffold_9 1471 5133" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21288114..21288887 /note="source:INTACT563_F255_scaffold_10-int 5158 5929" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21288380..21288979 /note="source:CACAO_M_S_E119127_F246_scaffold_9 5123 5727" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21288881..21289195 /note="source:INTACT563_F255_scaffold_10-int 6117 6433" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21289740..21290101 /note="source:INTACT642F_F365_scaffold_5-int 5916 6271" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21291802..21292005 /note="source:CACAO_M_S_E64023_F13_scaffold_5 7417 7660" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21291822..21292161) /note="source:CACAO_M_S_E83372_F14_scaffold_6 15127 15504" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21292156..21293191) /note="source:INTACT262_F12_scaffold_3-int 8600 9652" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21294163..21294698 /note="source:INTACT293_F14_scaffold_5-int 8678 9233" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21295716..21296258) /note="source:INTACT215F_F14_scaffold_3-int 9580 10119" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21298015..21299083 /note="source:CACAO_M_E65323_F12_scaffold_9 7737 8824" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21299545..21302392 /note="source:CACAO_M_E43224_F15_scaffold_5 1 2842" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21302582..21303303) /note="source:INTACT215F_F14_scaffold_3-int 9577 10295" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21306104..21306550 /note="source:CACAO_M_E42514_F40_scaffold_5 14550 14996" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(21306384..21649104) /locus_tag="TCM_024023" /note="dbxref CacaoGD:Thecc1EG024023" mRNA complement(join(21306384..21306445,21648437..21649104)) /locus_tag="TCM_024023" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:frave:gene00040.24" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018243t1" /inference="similar to AA sequence:Phytozome:Glyma01g20680.1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc2Loc4793t1_G2" mobile_element complement(21315007..21315688) /note="source:CACAO_M_S_E99574_F14_scaffold_9 8638 9319" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21315936..21316880) /note="source:CACAO_M_S_E32752_F12_scaffold_4 2468 3417" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21320450..21321742 /note="source:CACAO_M_E5899_F5_scaffold_2 19649 20700" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21321516..21321920) /note="source:CACAO_M_S_E64832_F14_scaffold_5 2650 3069" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21322907..21322971) /note="source:INTACT642F_F365_scaffold_5-int 6205 6274" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21322972..21325945 /note="source:CACAO_M_S_E65522_F7_scaffold_5 1 2974" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21325951..21326634) /note="source:CACAO_M_E49857_F85_scaffold_7 20295 20983" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21327227..21327349 /note="source:CACAO_M_S_E6875_F7_scaffold_2 7298 7419" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21329202..21336354) /note="source:CACAO_M_S_E99035_F335_scaffold_9 2806 9929" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21330549..21338442 /note="source:INTACT506_F233_scaffold_3-int 1421 8718" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21338443..21341463 /note="source:CACAO_M_E43240_F15_scaffold_5 1 2996" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21341464..21342019 /note="source:INTACT506_F233_scaffold_3-int 9527 10104" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21341464..21341530) /note="source:INTACT562_F254_scaffold_6-int 7766 7838" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(21342483..21344841) /locus_tag="TCM_024025" /note="dbxref CacaoGD:Thecc1EG024025" mRNA complement(join(21342483..21342814,21342892..21343102, 21344781..21344841)) /locus_tag="TCM_024025" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003518t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(21342575..21342814,21342892..21343074)) /locus_tag="TCM_024025" /note="paralog of Thecc1EG003518t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08814.1" /translation="MSRGDDSLDTPHSGIKGSVDSNARSQWHPDPKSQGNGQSQIPVT WIPLELEKIFAIGKVSKEKTKEAIAKGDIHPRKVSVVQHFPLGYGIGAALVSKEEYIR IQQAWIKDKIEKYQEVEEDLEEDQLVRSDQGDEDPKDA" mobile_element complement(21344817..21345114) /note="source:CACAO_M_E12297_F14_scaffold_3 17033 17328" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21345113..21345219 /note="source:CACAO_M_E9395_F12_scaffold_2 969 1074" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21345219..21345544) /note="source:scaffold_8_CACTA_0859 5 325" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21346885..21347851) /note="source:CACAO_M_S_E83372_F14_scaffold_6 3787 4755" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21347848..21348910) /note="source:scaffold_8_CACTA_0859 494 1545" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21355588..21358166 /note="source:CACAO_M_S_E53332_F15_scaffold_5 7949 10543" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21358199..21360532 /note="source:CACAO_M_E58010_F15_scaffold_9 1 2325" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21360533..21366434 /note="source:CACAO_M_E43251_F322_scaffold_5 1 5902" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21371407..21371916 /note="source:CACAO_M_S_E84415_F15_scaffold_6 9697 10206" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21371917..21380260 /note="source:INTACT213F_F15_scaffold_3-int 2619 11012" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21380334..21381137 /note="source:CACAO_M_E11098_F15_scaffold_2 6240 7033" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21384051..21387271 /note="source:scaffold_5_CACTA_0612 8693 11920" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21387291..21388401) /note="source:scaffold_3_CACTA_0382 9605 10705" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21389946..21391393 /note="source:INTACT85_F9_scaffold_4-int 1 1446" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21391828..21392579 /note="source:CACAO_M_E14825_F51_scaffold_3 1 748" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21392580..21395336 /note="source:CACAO_M_S_E50960_F369_scaffold_4 1 2790" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21395319..21397682 /note="source:INTACT667_F51_scaffold_5-int 8849 11231" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21400994..21407354 /note="source:CACAO_M_E56560_F259_scaffold_8 1 6217" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21407470..21410397 /note="source:CACAO_M_E43269_F230_scaffold_5 1 2928" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21411014..21411083) /note="source:scaffold_2_CACTA_0262 3314 3383" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21411566..21411629 /note="source:INTACT146F_F14_scaffold_2-int 13456 13519" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 21411786..21415780 /locus_tag="TCM_024031" /note="dbxref CacaoGD:Thecc1EG024031" mRNA join(21411786..21412332,21413253..21413634, 21415734..21415780) /locus_tag="TCM_024031" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" mobile_element complement(21412849..21412945) /note="source:INTACT146F_F14_scaffold_2-int 13445 13549" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS 21413324..21413536 /locus_tag="TCM_024031" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08815.1" /translation="MLMEKYWAQLIYQAQFSKGNFGHSVFVTEKGMHGSKRASSFGVI FGKFFSQTCFGNLYITFALEIRTTWF" mobile_element complement(21416258..21416473) /note="source:scaffold_8_CACTA_0859 17251 17468" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21416476..21419644) /note="source:scaffold_6_CACTA_0710 12670 15831" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21419642..21420388) /note="source:scaffold_8_CACTA_0859 16513 17253" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21420330..21420419) /note="source:CACAO_M_S_E89272_F5_scaffold_8 10903 10993" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21423268..21423323) /note="source:CACAO_M_S_E89272_F5_scaffold_8 10925 10984" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21423639..21423828) /note="source:scaffold_8_CACTA_0859 926 1111" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21423989..21424437) /note="source:scaffold_8_CACTA_0859 494 961" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21425619..21426192 /note="source:CACAO_M_E43271_F322_scaffold_5 1 574" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21426293..21428444 /note="source:CACAO_M_E43271_F322_scaffold_5 575 2726" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21429647..21436112) /note="source:CACAO_M_S_E53332_F15_scaffold_5 4314 10781" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21436116..21436179) /note="source:CACAO_M_S_E7865_F15_scaffold_2 2392 2456" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21436130..21436397 /note="source:CACAO_M_E1250_F15_scaffold_1 225 492" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21436915..21437157 /note="source:CACAO_M_S_E89272_F5_scaffold_8 9882 10135" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21437257..21437419 /note="source:CACAO_M_S_E89272_F5_scaffold_8 10127 10290" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21438268..21440847 /note="source:CACAO_M_S_E65571_F231_scaffold_5 1 2580" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21441917..21442007 /note="source:CACAO_M_E35674_F13_scaffold_5 8341 8431" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21444519..21445192 /note="source:CACAO_M_S_E84376_F22_scaffold_6 16082 16660" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21445074..21445269) /note="source:CACAO_M_E5899_F5_scaffold_2 21827 22025" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21445720..21445759) /note="source:CACAO_M_E24592_F195_scaffold_4 2823 2861" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21445765..21447117) /note="source:CACAO_M_E24592_F195_scaffold_4 2555 4565" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21447104..21448279) /note="source:INTACT407F_F356_scaffold_4-int 5175 6351" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21448257..21448423 /note="source:INTACT563_F255_scaffold_10-int 2282 2415" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21448281..21449186) /note="source:INTACT215F_F14_scaffold_3-int 9580 10482" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21449454..21452320 /note="source:CACAO_M_S_E31651_F51_scaffold_3 1 2855" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21453694..21454487 /note="source:INTACT242_F12_scaffold_1-int 2468 3204" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21454490..21457497) /note="source:CACAO_M_E22175_F54_scaffold_3 1 2924" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21457498..21458095 /note="source:INTACT242_F12_scaffold_1-int 3217 3814" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21458183..21459255) /note="source:CACAO_M_E69460_F12_scaffold_9 1 1073" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21459313..21459921 /note="source:INTACT242_F12_scaffold_1-int 3958 4548" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(21460229..21472021) /locus_tag="TCM_024034" /note="dbxref CacaoGD:Thecc1EG024034" mRNA complement(join(21460229..21461248,21461653..21461858, 21462037..21462183,21471132..21471216,21471903..21472021)) /locus_tag="TCM_024034" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.33 coverage" CDS complement(join(21461204..21461248,21461653..21461858, 21462037..21462130)) /locus_tag="TCM_024034" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08816.1" /translation="MALLMTWPMLINLPVIMAQRRSTQSLVTSLTSIVLNLKSLIKGI NGLAGEWDLFTLHINKTINMFKQISIEFPYHKNNSHLWFHTKFLPTLFFDLCLNFKVS WPCPSGIVTLAS" mobile_element complement(21463355..21463451) /note="source:CACAO_M_E58819_F24_scaffold_9 16191 16282" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21463373..21465678 /note="source:scaffold_2_CACTA_0259 5423 7711" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21465680..21468777 /note="source:CACAO_M_S_E65584_F306_scaffold_5 1 3098" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21468778..21469320 /note="source:INTACT789_F335_scaffold_1-int 2258 2799" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21469149..21469984) /note="source:CACAO_M_S_E85473_F233_scaffold_7 6409 7243" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21469985..21471271) /note="source:CACAO_M_E35356_F98_scaffold_5 1458 2753" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21471372..21472765 /note="source:CACAO_M_E52480_F98_scaffold_7 1395 2787" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21472766..21473462 /note="source:CACAO_M_S_E99035_F335_scaffold_9 3629 4335" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21473461..21477190 /note="source:scaffold_2_CACTA_0259 2378 6149" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21477195..21478666 /note="source:INTACT789_F335_scaffold_1-int 8233 9700" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21478867..21494126 /note="source:INTACT170_F12_scaffold_5-int 1 15260" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21494700..21495370) /note="source:CACAO_M_S_E89272_F5_scaffold_8 9052 9730" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21498586..21498761 /note="source:INTACT591_F264_scaffold_1-int 18924 19105" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21505558..21505647 /note="source:scaffold_5_CACTA_0591 4761 4849" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21507241..21508672) /note="source:CACAO_M_S_E65716_F44_scaffold_5 12198 13592" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21510384..21510566) /note="source:CACAO_M_E50525_F33_scaffold_7 3719 3900" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21512449..21512607 /note="source:INTACT265_F12_scaffold_7-int 82 236" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21513560..21513702) /note="source:INTACT189_F49_scaffold_5-int 18432 18576" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21514615..21515442) /note="source:CACAO_M_E58324_F9_scaffold_9 581 1447" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21515418..21515443 /note="source:CACAO_M_E43725_F15_scaffold_5 7836 7870" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21515444..21523299) /note="source:CACAO_M_S_E89806_F15_scaffold_8 2673 10524" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21523300..21526127 /note="source:CACAO_M_S_E65608_F15_scaffold_5 1 2800" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21526128..21528726 /note="source:CACAO_M_S_E65608_F15_scaffold_5 151 2800" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21528727..21531363) /note="source:CACAO_M_E5499_F15_scaffold_2 1 2645" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21528727..21528793 /note="source:INTACT99_F15_scaffold_5-int 151 223" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21531364..21532794) /note="source:CACAO_M_E11098_F15_scaffold_2 13844 15275" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21532795..21543545 /note="source:CACAO_M_E43303_F15_scaffold_5 1 10751" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 21540022..21555066 /locus_tag="TCM_024040" /note="dbxref CacaoGD:Thecc1EG024040" mRNA join(21540022..21540213,21540298..21540459, 21541132..21541204,21543532..21543744,21545001..21545074, 21545629..21545744,21549372..21549425,21551953..21552060, 21554079..21555066) /locus_tag="TCM_024040" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.45 coverage" CDS join(21540144..21540213,21540298..21540459, 21541132..21541204,21543532..21543744,21545001..21545074, 21545629..21545744,21549372..21549425,21551953..21552060, 21554079..21554090) /locus_tag="TCM_024040" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08817.1" /translation="METFGVWDEIGGGGTRAVTGEIAGTLRAAIGGGGGTGMLVDSAI GVALKEDAADFSSMESGRLCLGQPFPLPVDLVIEGSTGILDKIGYLQATTGLKYLERR VEFYTADGALMSKNVVDAYNLLEEMTSNNYQLPSKRSSPRKAIGAYEIDALSVTPRTL IWWLLELIGYQLRFQRSPIIPFGQLGKLGLDKGSNNTGWPFLEEMGNFYRCPVYRYSK KLSSFEGFTRHGSRCREKIRRQLRPRLSCPRMLAFLFVRYVEMAITLRSGKEVEGVSE KSIESSKEHVDDDKDCN" mobile_element complement(21543547..21543680) /note="source:CACAO_M_E58324_F9_scaffold_9 25937 26070" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21543690..21544096) /note="source:scaffold_5_CACTA_0591 7373 7777" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21544097..21546413 /note="source:CACAO_M_E43305_F389_scaffold_5 1 2317" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21546414..21546597) /note="source:scaffold_5_CACTA_0591 7191 7377" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21547315..21548094 /note="source:scaffold_5_CACTA_0591 10148 10909" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21551869..21551979) /note="source:CACAO_M_E58324_F9_scaffold_9 25823 25933" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21552743..21554776) /note="source:CACAO_M_E58324_F9_scaffold_9 1 2030" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21554781..21556427) /note="source:CACAO_M_E5899_F5_scaffold_2 21078 22689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21556428..21559432 /note="source:CACAO_M_E43311_F15_scaffold_5 1 3123" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21566439..21569547 /note="source:CACAO_M_E43312_F15_scaffold_5 1 3074" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21571912..21574394) /note="source:CACAO_M_E58324_F9_scaffold_9 21145 23839" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21576673..21577997) /note="source:INTACT167_F5_scaffold_2-int 4380 5691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21578412..21578459) /note="source:scaffold_8_CACTA_0859 658 706" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21579995..21582241 /note="source:CACAO_M_S_E51867_F7_scaffold_4 1 2247" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21582342..21583049 /note="source:CACAO_M_S_E51867_F7_scaffold_4 2254 2960" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21583726..21594506 /note="source:INTACT527_F15_scaffold_5-int 1 10759" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21596719..21597355) /note="source:scaffold_9_CACTA_0931 1 644" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21597941..21598027) /note="source:CACAO_M_S_E32752_F12_scaffold_4 14323 14413" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21601345..21601383) /note="source:CACAO_M_S_E5046_F335_scaffold_1 1614 1652" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21602305..21605628) /note="source:INTACT446_F218_scaffold_9-int 3644 6956" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 21605628..21606086 /note="source:CACAO_M_E5899_F5_scaffold_2 21325 21795" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21606234..21606957 /note="source:CACAO_M_E5899_F5_scaffold_2 21994 22691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21606979..21609884) /note="source:INTACT189_F49_scaffold_5-int 13689 16551" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21609975..21610350) /note="source:INTACT189_F49_scaffold_5-int 2814 3149" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21610351..21623418 /note="source:INTACT293_F14_scaffold_5-int 1 13068" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21623419..21623501 /note="source:CACAO_M_E3884_F22_scaffold_1 17774 17856" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21623441..21623512) /note="source:INTACT687_F13_scaffold_3-int 3477 3547" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21625819..21625925 /note="source:CACAO_M_E3884_F22_scaffold_1 13032 13130" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21636595..21646750 /note="source:INTACT612_F91_scaffold_5-int 1 10156" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21648210..21649152 /note="source:CACAO_M_E13172_F96_scaffold_3 1900 2842" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(21648439..21649062) /locus_tag="TCM_024023" /note="paralog of Thecc1EG018243t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08813.1" /db_xref="Phytozome:Glyma01g20680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AGW4" /translation="MAPFEALYGRRCRSPIGWLEVGERKLLGPELVQDATEKIHMIRQ RMLTAQSRQKSYADNRRRDLEFQVGDHVFLKVSPTKGVMRFGKKGKLSPRYIGPFEIL EKVGAVAYRLALPPDLSNIHPVFHVSMLRKYNPDPSHVIRYETIQLQDDLTYEEQPVA ILDRQVKKLRSKDVALVKVLWRNHTSEEVTWEAEDEMRTKHPHLFDM" mobile_element complement(21651616..21652659) /note="source:CACAO_M_E5569_F322_scaffold_2 4947 5990" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21657299..21658242 /note="source:CACAO_M_E13172_F96_scaffold_3 1123 2067" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21658211..21658250) /note="source:INTACT263_F12_scaffold_6-int 7146 7186" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21658494..21659228 /note="source:CACAO_M_S_E4534_F4_scaffold_1 4050 4780" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21662700..21664557 /note="source:CACAO_M_E43328_F4_scaffold_5 1 1858" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21668773..21668864 /note="source:CACAO_M_E23991_F4_scaffold_4 14428 14517" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21669249..21670215 /note="source:INTACT714_F310_scaffold_9-int 9235 10186" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21670734..21674735) /note="source:INTACT406_F208_scaffold_3-int 117 3879" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21673417..21675742 /note="source:CACAO_M_E58148_F12_scaffold_9 8384 10739" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21675802..21675888 /note="source:CACAO_M_E51521_F318_scaffold_7 1589 1676" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21677569..21677664) /note="source:CACAO_M_S_E4534_F4_scaffold_1 4694 4787" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21677580..21677666 /note="source:INTACT146F_F14_scaffold_2-int 3163 3250" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21681232..21682212 /note="source:INTACT701_F305_scaffold_10-int 6347 7327" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21688135..21688792) /note="source:CACAO_M_E10730_F318_scaffold_2 1 660" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21690317..21690400 /note="source:CACAO_M_E23991_F4_scaffold_4 14505 14588" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21693578..21693751 /note="source:INTACT904F_F49_scaffold_6-int 13841 13996" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21695767..21697623 /note="source:CACAO_M_S_E65640_F4_scaffold_5 1 1857" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21708443..21709278) /note="source:CACAO_M_S_E7818_F60_scaffold_2 6770 7597" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21709296..21710188) /note="source:CACAO_M_E35511_F5_scaffold_5 2677 3571" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21710189..21710995) /note="source:CACAO_M_E8574_F341_scaffold_2 2073 2879" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21711096..21712928) /note="source:CACAO_M_S_E86291_F319_scaffold_7 1 1803" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21713291..21713416) /note="source:INTACT1373F_F385_scaffold_8-int 19264 19399" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21713479..21713878) /note="source:INTACT1373F_F385_scaffold_8-int 17900 18264" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21713533..21713985 /note="source:INTACT336_F12_scaffold_2-int 7629 8070" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21716986..21717699) /note="source:INTACT695_F301_scaffold_5-int 3738 4459" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21717665..21717737 /note="source:INTACT1332F_F13_scaffold_8-int 10689 10764" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21717849..21718142 /note="source:INTACT595_F266_scaffold_7-int 1306 1572" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21718088..21718817) /note="source:CACAO_M_E24592_F195_scaffold_4 19420 20143" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21719509..21719588 /note="source:CACAO_M_S_E99244_F4_scaffold_9 3760 3839" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21719526..21721028) /note="source:CACAO_M_E5326_F22_scaffold_2 21166 22673" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21720842..21721779 /note="source:CACAO_M_S_E4534_F4_scaffold_1 3529 4471" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 21722008..21722083 /note="source:INTACT1223F_F374_scaffold_6-int 5348 5423" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21723002..21723358 /note="source:INTACT904F_F49_scaffold_6-int 10307 10596" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21723440..21723584 /note="source:INTACT904F_F49_scaffold_6-int 13644 13785" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21723641..21723919 /note="source:INTACT904F_F49_scaffold_6-int 13792 14034" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21726457..21726676) /note="source:INTACT477_F225_scaffold_9-int 146 364" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21726719..21726765) /note="source:INTACT477_F225_scaffold_9-int 142 188" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21726849..21728575) /note="source:INTACT477_F225_scaffold_9-int 2800 4512" /mobile_element_type="retrotransposon:LTR/Copia" gene 21737948..21745008 /locus_tag="TCM_024052" /note="dbxref CacaoGD:Thecc1EG024052" mRNA join(21737948..21738565,21739189..21739319, 21739903..21739944,21740038..21740146,21741018..21741096, 21741174..21741470,21741759..21741871,21743289..21743396, 21743472..21743534,21743661..21743828,21744253..21745008) /locus_tag="TCM_024052" /product="CDPK-related kinase 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s03470.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000571t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s03470.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4851t2" CDS join(21738083..21738565,21739189..21739319, 21739903..21739944,21740038..21740146,21741018..21741096, 21741174..21741470,21741759..21741871,21743289..21743396, 21743472..21743534,21743661..21743828,21744253..21744390) /locus_tag="TCM_024052" /note="paralog of Thecc1EG000571t1" /codon_start=1 /product="CDPK-related kinase 1" /protein_id="EOY08818.1" /db_xref="Phytozome:POPTR_0016s03470.1" /db_xref="TAIR:AT2G41140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S840" /translation="MGLCHGKPTEHQQNQSRDISIPGENDPPANAHSTKSSNFPFYSP SPLPSLFKTSPAISSVNSTPLRIFKRPFPPPSPAKHIRALLARRHGSIKPNEASIPEG NECDIGLDKNFGFSKHFMSHYELGEEVGRGHFGYTCTAKGKKGSLKGHDVAVKVIPKS KMTTAIAIEDVRREVKILRALTGHKNLVQFYDAYEDDDNVYIVMELCRGGELLDRILS RGGKYSEEDAKTVVVQILSVVAFCHLQGVVHRDLKPENFLFTSKQENSPLKAIDFGLS DYVKPDERLNDIVGSAYYVAPEVLHRSYGTEADMWSIGVIAYILLCGSRPFWARTESG IFRAVLKADPSFDEAPWPSLSPEAIDFVKRLLNKDYRKRLTAAQALSHPWLANYHEIK IPSDMIICRLVKAYIGSSALRKTALGALAKTLTVPQLAYLREQFTLLGPNKNGFISMQ NYKTALMKNSTDAMKDSRVLDYVNMISTLQYRKLDFEEFCAASISVHQLEGMETWEQH ARRAYDLFEKDGNRPIMIEELASELGLSPSVPVHVVLQDWIRHSDGKLSFLGFVRLLH GISSRTFQKS" gene 21748252..21754741 /locus_tag="TCM_024053" /note="dbxref CacaoGD:Thecc1EG024053" mRNA join(21748252..21748493,21749564..21749735, 21749863..21749953,21750121..21750212,21750315..21750408, 21750528..21750607,21752297..21752380,21754094..21754193, 21754283..21754429) /locus_tag="TCM_024053" /product="Embryo sac development arrest 14 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s02490.1" /inference="similar to AA sequence:Phytozome:GSVIVT01029836001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4853t3" mRNA join(21749174..21749260,21749564..21749735, 21749863..21749953,21750121..21750212,21750315..21750408, 21750528..21750607,21752297..21752380,21754094..21754193, 21754283..21754741) /locus_tag="TCM_024053" /product="Embryo sac development arrest 14 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s02490.1" /inference="similar to AA sequence:Phytozome:GSVIVT01029836001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4853t3; alternateUTRof:Thecc1EG024053t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4853t3" gene <21749312..21749593 /locus_tag="TCM_024054" /note="dbxref CacaoGD:Thecc1EG024054" mRNA join(<21749312..21749472,21749564..21749593) /locus_tag="TCM_024054" /product="Uncharacterized protein isoform 2" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is none, intron is medium, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1315t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc714t8" CDS <21749313..21749417 /locus_tag="TCM_024054" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY08821.1" /translation="FGINEAQFISFMGFGINEAQFISFMGLFFPINWS" CDS join(21749680..21749735,21749863..21749953, 21750121..21750212,21750315..21750408,21750528..21750607, 21752297..21752380,21754094..21754193,21754283..21754375) /locus_tag="TCM_024053" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Embryo sac development arrest 14 isoform 1" /protein_id="EOY08819.1" /db_xref="Phytozome:GSVIVT01029836001" /db_xref="TAIR:AT3G60360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M223" /translation="MSSLRNAISRRAHKERAQPSSRKKFGLLEKHKDYVVRAKAFHKK EETLRRLKEKAAFRNPDEFYFQMIKTRTVDGVHKPESQANKYTQEELMLMKTQDMGYI LQKMQSEKKKIEKLTAVLHCVDNQPSNRHIYYAEDRQEARELYSQSSENRTPPSSADI PDHIKRKTATSYRELEARKSRVNELAKIYMEMSLKKELQKKGRKRKLREDELICPTSK PVFKWRSERKR" CDS join(21749680..21749735,21749863..21749953, 21750121..21750212,21750315..21750408,21750528..21750607, 21752297..21752380,21754094..21754193,21754283..21754375) /locus_tag="TCM_024053" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Embryo sac development arrest 14 isoform 1" /protein_id="EOY08820.1" /db_xref="Phytozome:GSVIVT01029836001" /db_xref="TAIR:AT3G60360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M223" /translation="MSSLRNAISRRAHKERAQPSSRKKFGLLEKHKDYVVRAKAFHKK EETLRRLKEKAAFRNPDEFYFQMIKTRTVDGVHKPESQANKYTQEELMLMKTQDMGYI LQKMQSEKKKIEKLTAVLHCVDNQPSNRHIYYAEDRQEARELYSQSSENRTPPSSADI PDHIKRKTATSYRELEARKSRVNELAKIYMEMSLKKELQKKGRKRKLREDELICPTSK PVFKWRSERKR" mobile_element 21756166..21756248 /note="source:scaffold_5_CACTA_0599 4 88" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21756457..21756541 /note="source:scaffold_5_CACTA_0599 6 90" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21756803..21775556 /note="source:scaffold_5_CACTA_0599 1 17826" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21775835..21775897 /note="source:scaffold_5_CACTA_0599 10094 10156" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21775896..21777358) /note="source:scaffold_1_CACTA_0023 3866 5221" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21776817..21778063 /note="source:scaffold_2_CACTA_0261 2595 3887" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(21777308..21778490) /note="source:CACAO_M_E47740_F12_scaffold_6 4102 5241" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21778491..21778772 /note="source:scaffold_5_CACTA_0599 10152 10429" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21778743..21779522 /note="source:scaffold_5_CACTA_0599 10678 11459" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21779520..21780142 /note="source:CACAO_M_E42809_F5_scaffold_5 5153 5777" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21780143..21783132 /note="source:CACAO_M_S_E5793_F7_scaffold_2 1 3004" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21783133..21783678 /note="source:CACAO_M_E42809_F5_scaffold_5 5772 6295" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21785075..21785847 /note="source:CACAO_M_E33213_F12_scaffold_4 9306 9858" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21785848..21791086) /note="source:scaffold_2_CACTA_0259 925 6873" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21790891..21791114 /note="source:INTACT410F_F357_scaffold_4-int 9765 9990" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21790949..21792372) /note="source:INTACT789_F335_scaffold_1-int 1397 2799" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21794522..21798569) /note="source:CACAO_M_E45504_F98_scaffold_6 2164 6194" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21803600..21804507 /note="source:CACAO_M_E14490_F322_scaffold_3 418 1328" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21804780..21805674 /note="source:CACAO_M_E70226_F322_scaffold_10 1917 2811" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21805675..21806773 /note="source:INTACT336_F12_scaffold_2-int 4336 5420" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21810113..21811502 /note="source:INTACT336_F12_scaffold_2-int 13752 15103" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21812600..21815325 /note="source:CACAO_M_E43342_F96_scaffold_5 1 2705" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21818078..21818167 /note="source:scaffold_2_CACTA_0262 885 980" /mobile_element_type="transposon:TIR/CACTA" gene 21820592..21827907 /locus_tag="TCM_024058" /note="dbxref CacaoGD:Thecc1EG024058" mRNA join(21820592..21821129,21821799..21821891, 21822105..21822338,21822578..21822680,21825820..21826049, 21827313..21827907) /locus_tag="TCM_024058" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29733.m000740" /inference="similar to AA sequence:Phytozome:GSVIVT01025744001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc606t1" CDS join(21821071..21821129,21821799..21821891, 21822105..21822338,21822578..21822680,21825820..21826049, 21827313..21827535) /locus_tag="TCM_024058" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08822.1" /db_xref="Phytozome:GSVIVT01025744001" /db_xref="TAIR:AT3G56750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IJX5" /translation="MRRLESSLRCALEEAIFLNRTFVMPSRMCINPIHNNKGILHNLA NATAEERWAASSCAMDSLYDLDLISETVPAILDNSNVWHLILSTSMKLGARGVAHVEG LKRVDLKEDSRYSNLLLINRTASPLSWFMECKDRNNRSAVMLPYSFLPSMAAEKLRNA ADQIKTLLGDYYAIHVRRGDKIKTRKDRYGVERSLHPHLDRDTRAEFILRRIQKWVPA GRTLFIASNERTPGFFSPLSVRYKLAYSSNYSQILDPLIENNYQLFMIERLILMGAKT FIKTFKEDDTDLSLTDDPKKNTKMWQIPVYTLDGEGS" mobile_element complement(21828901..21828973) /note="source:CACAO_M_E5193_F22_scaffold_2 277 351" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21829277..21829324) /note="source:scaffold_2_CACTA_0262 3356 3410" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21835211..21837279 /note="source:CACAO_M_E43344_F106_scaffold_5 1 2069" /mobile_element_type="retrotransposon:LTR/Copia" gene 21838271..21843003 /locus_tag="TCM_024059" /note="dbxref CacaoGD:Thecc1EG024059" mRNA join(21838271..21838545,21838789..21838863, 21839972..21840029,21842469..21843003) /locus_tag="TCM_024059" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014350t1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.44 coverage" CDS join(21840011..21840029,21842469..21842917) /locus_tag="TCM_024059" /note="paralog of Thecc1EG014350t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08823.1" /translation="MLAFLVELAMVAKRFRKLMGQRDRRLAKKGYKREQSSSWKNISK NDSNKKEDIICYECKKPGHFRSECPMLKEETPKKNKKSKKAMVVATWSDSDVLSSDVE EEKVERRANLCLMARDDESGYLLLLVIFQLMKFKNNMNASMMNLKSWHQNIRL" mobile_element complement(21840404..21840516) /note="source:INTACT1432F_F101_scaffold_9-int 2284 2396" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 21840518..21868829 /note="source:CACAO_M_E43348_F5_scaffold_5 1 28267" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21869076..21869284 /note="source:INTACT118_F5_scaffold_9-int 1036 1241" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(21869622..21888937) /locus_tag="TCM_024064" /note="dbxref CacaoGD:Thecc1EG024064" mRNA complement(join(21869622..21870008,21888478..21888937)) /locus_tag="TCM_024064" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is paralog medium, intron is none, protein is utrpoor_complete" CDS complement(21869769..21870002) /locus_tag="TCM_024064" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08824.1" /translation="MHQEAQLTPPKIEQTAEEAHPDKGKATDTDPKAKKTASKGKKTM ATKTKTFRRRQFVRLALASTQSSSKSIDPNLFH" gene complement(21871311..21873974) /locus_tag="TCM_024065" /note="dbxref CacaoGD:Thecc1EG024065" mRNA complement(join(21871311..21872482,21872767..21873382, 21873924..21873974)) /locus_tag="TCM_024065" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024232t1" /inference="similar to AA sequence:Phytozome:Glyma03g21660.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.69 coverage" CDS complement(join(21872108..21872482,21872767..21872808)) /locus_tag="TCM_024065" /note="paralog of Thecc1EG024232t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08825.1" /db_xref="Phytozome:Glyma03g21660.1" /translation="MMIKGKVWTKSSTEPCKKQNSITLSTVEVEYISLGSCCAQILWI RQQLNDFGKTMHKVPIYCDNMNAINISKNPVQHSRTKHIEIRHHFTRDHMLKGDIEID FVDTFHQLADIFIKPLNKEQFCRIRKDLGMVNASEV" mobile_element 21875852..21876377 /note="source:CACAO_M_E12297_F14_scaffold_3 6342 6869" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21885286..21887072) /note="source:scaffold_9_CACTA_0931 1 1800" /mobile_element_type="transposon:TIR/CACTA" gene 21891892..21899719 /locus_tag="TCM_024066" /note="dbxref CacaoGD:Thecc1EG024066" mRNA join(21891892..21892186,21893140..21893638, 21894269..21894321,21894525..21894589,21894704..21894785, 21898596..21898898,21899102..21899719) /locus_tag="TCM_024066" /product="Dual specificity protein phosphatase-related isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025743001" /inference="similar to AA sequence:ricco:29733.m000741" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4886t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4886t2" mRNA join(21891892..21892186,21893140..21893638, 21894269..21894321,21894525..21894589,21894707..21894785, 21898596..21898898,21899102..21899595) /locus_tag="TCM_024066" /product="Dual specificity protein phosphatase-related isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025743001" /inference="similar to AA sequence:ricco:29733.m000741" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4886t2" CDS join(21893202..21893638,21894269..21894321, 21894525..21894589,21894704..21894785,21898596..21898898, 21899102..21899256) /locus_tag="TCM_024066" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29733.m000741" /codon_start=1 /product="Dual specificity protein phosphatase-related isoform 2" /protein_id="EOY08827.1" /db_xref="TAIR:AT4G18593.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IHQ2" /translation="MHLVRENLFIGNIGDAAQVLQNDSAEITHILSVLSSASISFFSE WRSGLTIPTKEIKKVFVGGSGGAAASGDHVDDASKSSLSPQKLLYLLEYAGKDLKLVR MAVPIRDMESENLLDYLDACFDFIDQSRKEGSVLVHCFAGVSRSAAIITAYLMRTEQL SQEDALESLRQTCEFVCPNDGFLEQQLKMFEEMGHKVDHSSPVYKRFRLKVLGDCYNR GEKIDSSKLGADPGLPTESSSVMEAPPKEGTNRTAYRCKKCRRVVALQENVVDHIPGE GETSFEWNKRRSGNPFNKSVQTECSSIFVEPLRWMTAVEEGAIEGKLSCAHCEARLGY FNWSGIQCSCGSWITPAFQLHKSRVDISTV" CDS join(21893202..21893638,21894269..21894321, 21894525..21894589,21894707..21894785,21898596..21898898, 21899102..21899256) /locus_tag="TCM_024066" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29733.m000741" /codon_start=1 /product="Dual specificity protein phosphatase-related isoform 1" /protein_id="EOY08826.1" /db_xref="TAIR:AT4G18593.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IHQ2" /translation="MHLVRENLFIGNIGDAAQVLQNDSAEITHILSVLSSASISFFSE WRSGLTIPTKEIKKVFVGGSGGAAASGDHVDDASKSSLSPQKLLYLLEYAGKDLKLVR MAVPIRDMESENLLDYLDACFDFIDQSRKEGSVLVHCFAGVSRSAAIITAYLMRTEQL SQEDALESLRQTCEFVCPNDGFLEQLKMFEEMGHKVDHSSPVYKRFRLKVLGDCYNRG EKIDSSKLGADPGLPTESSSVMEAPPKEGTNRTAYRCKKCRRVVALQENVVDHIPGEG ETSFEWNKRRSGNPFNKSVQTECSSIFVEPLRWMTAVEEGAIEGKLSCAHCEARLGYF NWSGIQCSCGSWITPAFQLHKSRVDISTV" mobile_element 21901507..21901579 /note="source:CACAO_M_E639_F17_scaffold_1 2808 2883" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21901519..21901590 /note="source:CACAO_M_E42514_F40_scaffold_5 2344 2414" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21901528..21901579) /note="source:CACAO_M_S_E85177_F5_scaffold_7 1074 1127" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21901580..21901990) /note="source:INTACT135F_F90_scaffold_2-int 17050 17475" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21903142..21903210) /note="source:CACAO_M_E48538_F49_scaffold_6 299 367" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21903202..21903463) /note="source:CACAO_M_E48538_F49_scaffold_6 12214 12476" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21904462..21904618 /note="source:CACAO_M_S_E4413_F3_scaffold_1 593 735" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21904637..21914556 /note="source:INTACT715_F7_scaffold_5-int 1 9920" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21914569..21915513 /note="source:CACAO_M_S_E15173_F4_scaffold_2 919 1864" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21917152..21917194) /note="source:CACAO_M_E47740_F12_scaffold_6 1016 1060" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21917196..21917244) /note="source:CACAO_M_E69283_F22_scaffold_9 826 870" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21918087..21918235) /note="source:CACAO_M_E48538_F49_scaffold_6 528 679" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21918330..21919496 /note="source:CACAO_M_E56674_F14_scaffold_8 11945 13107" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21927161..21927317) /note="source:CACAO_M_E69283_F22_scaffold_9 824 974" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21928258..21928338 /note="source:INTACT83_F5_scaffold_9-int 12573 12652" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21932307..21932635) /note="source:INTACT649F_F368_scaffold_5-int 15792 16130" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21932630..21935355) /note="source:CACAO_M_S_E65716_F44_scaffold_5 7129 9810" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(21932907..21953200) /locus_tag="TCM_024070" /note="dbxref CacaoGD:Thecc1EG024070" mRNA complement(join(21932907..21933009,21938560..21938824, 21944751..21944873,21947394..21947495,21947581..21947732, 21948372..21948438,21951304..21951332)) /locus_tag="TCM_024070" /product="Ubiquitin-associated (UBA) protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025741001" /inference="similar to AA sequence:Phytozome:GSVIVT01025741001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc678t5; inference alignment:Newbler:10:TSA:cgbaP1_g00633t00002; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4954t2" mobile_element complement(21935355..21936690) /note="source:INTACT649F_F368_scaffold_5-int 357 1679" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(21936754..21937114) /note="source:INTACT649F_F368_scaffold_5-int 1 359" /mobile_element_type="retrotransposon:LTR/Copia" mRNA complement(join(21937927..21938824,21944751..21944873, 21947394..21947495,21947581..21947732,21948372..21948438, 21951304..21951444,21952723..21952823,21952938..21953200)) /locus_tag="TCM_024070" /product="Ubiquitin-associated (UBA) protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025741001" /inference="similar to AA sequence:Phytozome:GSVIVT01025741001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:PASA:2:TSA:puevd3b023280t1a2; alternateUTRof:Thecc1EG024070t1; inference alignment:Newbler:10:TSA:cgbaP1_g00633t00002" mRNA complement(join(21937927..21938098,21938190..21938310, 21938560..21938824,21944751..21944873,21947394..21947495, 21947581..21947732,21948372..21948438,21951304..21951433, 21952723..21952823,21952938..21953171)) /locus_tag="TCM_024070" /product="Ubiquitin-associated (UBA) protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025741001" /inference="similar to AA sequence:Phytozome:GSVIVT01025741001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:PASA:2:TSA:puevd3b023280t1a3; inference alignment:Newbler:10:TSA:cgbaP1_g00633t00002" mRNA complement(join(21937927..21938098,21938190..21938310, 21938560..21938824,21944751..21944873,21947394..21947495, 21947581..21947732,21948372..21948438,21951304..21951444, 21952723..21952823,21952938..21952997)) /locus_tag="TCM_024070" /product="Ubiquitin-associated (UBA) protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025741001" /inference="similar to AA sequence:Phytozome:GSVIVT01025741001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00633t00002" mRNA complement(join(21937987..21938098,21944751..21944875, 21947394..21947495,21947581..21947732,21948372..21948438, 21951304..21951444,21952723..21952823,21952938..21953200)) /locus_tag="TCM_024070" /product="Ubiquitin-associated domain-containing protein 2 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025741001" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400018666" /inference="similar to AA sequence:Phytozome:GSVIVT01025741001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4954t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4954t2; inference alignment:Newbler:10:TSA:cgbaP1_g00633t00002" CDS complement(join(21938026..21938098,21944751..21944875, 21947394..21947495,21947581..21947732,21948372..21948438, 21951304..21951444,21952723..21952823,21952938..21952962)) /locus_tag="TCM_024070" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Ubiquitin-associated domain-containing protein 2 isoform 3" /protein_id="EOY08830.1" /db_xref="Phytozome:GSVIVT01025741001" /db_xref="TAIR:AT3G56740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LET3" /translation="MNGGPSGFNNAPVTRIFLIACALFTVFFGIQGRSFKLGLSYQDI FRKLSIWKLIVSVFAFSSTPELMFGLYLLYYFRVFERQIGSNKYSVFILFSVMVSFFF EVMALAILKDPTANLLTSGPYGLIFASFVPFYFDIPVSTWFRIFGVRFSDKSFIYLAG LQLLLSSWKRSLLPGICGILAGSLYRLNVFHIRRAKSSLSLLRPSSHGFLGLLRGTHL QLQQGILQEMYLPTQPAKRSFYFVCMRIKWERHEMKLQVERRR" CDS complement(join(21938654..21938824,21944751..21944873, 21947394..21947495,21947581..21947732,21948372..21948438, 21951304..21951444,21952723..21952823,21952938..21952962)) /locus_tag="TCM_024070" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Ubiquitin-associated (UBA) protein isoform 1" /protein_id="EOY08828.1" /db_xref="Phytozome:GSVIVT01025741001" /db_xref="TAIR:AT3G56740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LET3" /translation="MNGGPSGFNNAPVTRIFLIACALFTVFFGIQGRSFKLGLSYQDI FRKLSIWKLIVSVFAFSSTPELMFGLYLLYYFRVFERQIGSNKYSVFILFSVMVSFFF EVMALAILKDPTANLLTSGPYGLIFASFVPFYFDIPVSTWFRIFGVRFSDKSFIYLAG LQLLLSSWKRSLLPGICGILAGSLYRLNVFHIRRAKFPEFVTSFFSRLSWPSTGNPPT ASARNLAGNVPSYTTRQAERTYPSTAAPSAIEPPEDCIATLVSMGFDRNSARQALVHA RNDVNAATNILLEAQAH" CDS complement(join(21938654..21938824,21944751..21944873, 21947394..21947495,21947581..21947732,21948372..21948438, 21951304..21951444,21952723..21952823,21952938..21952962)) /locus_tag="TCM_024070" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Ubiquitin-associated (UBA) protein isoform 1" /protein_id="EOY08831.1" /db_xref="Phytozome:GSVIVT01025741001" /db_xref="TAIR:AT3G56740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LET3" /translation="MNGGPSGFNNAPVTRIFLIACALFTVFFGIQGRSFKLGLSYQDI FRKLSIWKLIVSVFAFSSTPELMFGLYLLYYFRVFERQIGSNKYSVFILFSVMVSFFF EVMALAILKDPTANLLTSGPYGLIFASFVPFYFDIPVSTWFRIFGVRFSDKSFIYLAG LQLLLSSWKRSLLPGICGILAGSLYRLNVFHIRRAKFPEFVTSFFSRLSWPSTGNPPT ASARNLAGNVPSYTTRQAERTYPSTAAPSAIEPPEDCIATLVSMGFDRNSARQALVHA RNDVNAATNILLEAQAH" CDS complement(join(21938654..21938824,21944751..21944873, 21947394..21947495,21947581..21947732,21948372..21948438, 21951304..21951372)) /locus_tag="TCM_024070" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Ubiquitin-associated (UBA) protein isoform 2" /protein_id="EOY08829.1" /db_xref="Phytozome:GSVIVT01025741001" /db_xref="TAIR:AT3G56740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LET3" /translation="MFGLYLLYYFRVFERQIGSNKYSVFILFSVMVSFFFEVMALAIL KDPTANLLTSGPYGLIFASFVPFYFDIPVSTWFRIFGVRFSDKSFIYLAGLQLLLSSW KRSLLPGICGILAGSLYRLNVFHIRRAKFPEFVTSFFSRLSWPSTGNPPTASARNLAG NVPSYTTRQAERTYPSTAAPSAIEPPEDCIATLVSMGFDRNSARQALVHARNDVNAAT NILLEAQAH" CDS complement(join(21938654..21938824,21944751..21944873, 21947394..21947495,21947581..21947732,21948372..21948417)) /locus_tag="TCM_024070" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Ubiquitin-associated (UBA) protein isoform 5" /protein_id="EOY08832.1" /db_xref="Phytozome:GSVIVT01025741001" /db_xref="TAIR:AT3G56740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LET3" /translation="MVSFFFEVMALAILKDPTANLLTSGPYGLIFASFVPFYFDIPVS TWFRIFGVRFSDKSFIYLAGLQLLLSSWKRSLLPGICGILAGSLYRLNVFHIRRAKFP EFVTSFFSRLSWPSTGNPPTASARNLAGNVPSYTTRQAERTYPSTAAPSAIEPPEDCI ATLVSMGFDRNSARQALVHARNDVNAATNILLEAQAH" gene 21939203..21940456 /locus_tag="TCM_024071" /note="dbxref CacaoGD:Thecc1EG024071" mRNA join(21939203..21939473,21939803..21940456) /locus_tag="TCM_024071" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is ortholog weak, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.18 coverage" CDS join(21939417..21939473,21939803..21940024) /locus_tag="TCM_024071" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08833.1" /translation="MTRYDARRQLYGQSGIILQEFEAQSRESGNDQKGELPKQPFEVQ HLLDGFKELVSEELPSVLPPIRRVQLAIGSVPAASLPNVPAYRMPLLQ" mobile_element 21940770..21940951 /note="source:CACAO_Mutator_E1376_scaffold_6 1280 1461" /mobile_element_type="transposon:TIR/Mutator" gene 21953343..21960196 /locus_tag="TCM_024073" /note="dbxref CacaoGD:Thecc1EG024073" mRNA join(21953343..21953646,21953894..21953973, 21955802..21956106,21956272..21956481,21957523..21958167, 21958824..21959264,21959658..21960196) /locus_tag="TCM_024073" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:frave:gene17676.2" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(21953954..21953973,21955802..21956106, 21956272..21956481,21957523..21958167,21958824..21959264, 21959658..21960019) /locus_tag="TCM_024073" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08834.1" /translation="MSLSRDRIRFGLKTEDPRSQPVDTLPQNQNVLPGAFPRLSYRHT LFNENHEHDTNGEALDDDEVEVEVPESDEEDTDRNIGGPYIRLTKEEKLRIWKPWKNT LIVKLLDHYLIIRRWCLRFRSDEALVESVATRVCLLGMPREYYDKEILARISNKIGKT IKIDRTTSSQLRGKFARLWMGVDKMCCKYGFQNYFKVKANGYSGGIWVFWNAEVIEVE VLAYSSQLTHLLLNPSKEQWLLTEIYGSPLVKERKHLWDSLKLASNDQDIPWMVIGDF NQIISPDEKHGRNSVNLTQCNQLLNCMSYCNLYDFEASGFKFTWWNKKEGLDYTQVRL DRVFVNDRWHVMFPNVVAINLPRTHSDHHPVLVRCSSPSMLPDLNKFRFKEARTSHPS FDAYLRGSFPPSLNHTLITLIPKVERLENVSQFCPISLCSVRMKLLSKILVDRLRPIL TELRRNTQSSFIPRLQASDNIIVVQKAIHTMWIMKRKKGALVIKIDLEKAYDRVKWSF LQEVLIEIGLPLNWISLIMNIVQNPTFFVLWNGTPMLHGGVTKATYFDICSKVGRKLE QWSNKFLSMAGRVSLAQAVTSTMASYIMQTTLLPNNVAMEINKLNMNFIWGQVSGKRK IHAINWHTLCLPKELRGLQIKETKKFNLALLAKLGW" mobile_element 21972332..21973372 /note="source:scaffold_6_CACTA_0702 3112 4117" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21973880..21974602 /note="source:scaffold_6_CACTA_0702 9276 10057" /mobile_element_type="transposon:TIR/CACTA" mobile_element 21977330..21977618 /note="source:CACAO_M_E3884_F22_scaffold_1 14095 14381" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21977677..21980814 /note="source:CACAO_M_S_E65673_F7_scaffold_5 1 3138" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21980817..21981331 /note="source:CACAO_M_E3884_F22_scaffold_1 14379 14866" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21981327..21984258 /note="source:CACAO_M_E3884_F22_scaffold_1 7032 9919" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21984246..21984322 /note="source:CACAO_M_E3884_F22_scaffold_1 14860 14936" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21984331..21985561) /note="source:CACAO_M_E13139_F322_scaffold_3 1439 2681" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21986350..21987050) /note="source:CACAO_M_E24137_F96_scaffold_4 1 701" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 21987051..21987139 /note="source:CACAO_M_E5569_F322_scaffold_2 1983 2070" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(21988045..21990011) /note="source:CACAO_M_E48538_F49_scaffold_6 4575 6486" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 21993283..21997135 /locus_tag="TCM_024076" /note="dbxref CacaoGD:Thecc1EG024076" mRNA join(21993283..21993545,21994304..21994676, 21996342..21997135) /locus_tag="TCM_024076" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s02400.1" /inference="similar to AA sequence:ricco:29724.m000858" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.14 coverage" CDS join(21993532..21993545,21994304..21994676, 21996342..21996605) /locus_tag="TCM_024076" /note="dbxref ricco:29724.m000858" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08835.1" /translation="MSISLIRFLHFLKIIVITCPRCKECWEWARVYLNYCFCSARDER SFTLGLINIISWSVAKIPHIITNYKEKSVEGLSLSFLITWIVGWVFLLFYHRLFLLLY YLPKGFYHHSICKYLFNVFGCILESATVDGGNDYNGNEKGNKRLEAGPDTPFCKNHNL LLLRHILRSLSLFIYESAPHLSVSSFRSQFPGIGGSQFSQFIVLPWIRTSGSTNIR" gene 21997201..21998345 /locus_tag="TCM_024077" /note="dbxref CacaoGD:Thecc1EG024077" mRNA 21997201..21998345 /locus_tag="TCM_024077" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021643t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s12810.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.76 coverage" CDS 21997777..21998256 /locus_tag="TCM_024077" /note="paralog of Thecc1EG021643t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08836.1" /db_xref="Phytozome:POPTR_0016s12810.1" /translation="MRISLVSWLFFDSFIAIFCIINAVSVSGQCQSDQQELLLRLKNG LDSTLSVKLVKWNQSKDCCSWDDVSCDAGGRVIELDLSNQSISGVIDNSSSLFGLLYL QSLNSAYNRFNSTIASRLDELADLSYLNFVEIKTSLNVILSNYVQDKCPLCFVVLVW" mobile_element 21998169..22002916 /note="source:CACAO_M_E43362_F23_scaffold_5 1 4748" /mobile_element_type="retrotransposon:LTR/Copia" gene 21998406..22001235 /locus_tag="TCM_024078" /note="dbxref CacaoGD:Thecc1EG024078" mRNA join(21998406..21999917,22000293..22001235) /locus_tag="TCM_024078" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014834t1" /inference="similar to AA sequence:Phytozome:Glyma07g34840.1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.64 coverage" CDS join(21998682..21999917,22000293..22001168) /locus_tag="TCM_024078" /note="paralog of Thecc1EG014834t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08837.1" /db_xref="Phytozome:Glyma07g34840.1" /translation="MKAFLRGVNLWNAVEFETELLVLKENATQAQVKQYVEDIAKRYR ALSFKHSTVSESVFNRIMGCETANEALSKLEKEFLGSARSKQVRLQNLRRKYELLRMK ENQTIGEFVEDLMKLVNQIRLMGDSLIDLKVVEKIMLSLPERFDPTITYLEQVKDITE LSISDLVSALEADEQRKAARRDERVDHALAARAKGKAPADSSFKKNSNETKEKDKTGT TAGRFRNKKGKFPICPHCKKRSHYEAYCWFRPRVKCNACKQLGHVEKVCKNKAEVADK KQQIAKQVEKAEVAEEVLFMTIEDSNSSNYNHWLLDSTCSNHMTSKAELFSELDTDHC SSVKIGNGFILNAVGKGTVAIQTTSGTRYVLNVLLVPEITQNLLSVGQLVDEDYMLVF KNNACTVYDPSAVYMMSVPMHKSEVFSVFQKFKAKVENESGCRIKILRTNNGGEYTSS EFTSYLEKEGIHHQLTAPYCPEQNGVSERKNRTIIEMSRCLLFEKKLPKSFWAEATNT AVYLQNILITQAVNNETPYEVWYSIRPSVDHLRIFGSICYLHVPDELRDKLQPKAKLG VFIGYSQQSKACRIYQIESGTVSVSIHVTFDEGAYWNWEKNQMQHTKFLDEDVNLQLA NSEEILDAEQIVDEPPVRDTRSLQEIYESCNVAVFDPATPEEAIVLPGWKEAMEEEMK MINLNKTWSLVDDLSIIMLLE" gene 22003456..22015054 /locus_tag="TCM_024080" /note="dbxref CacaoGD:Thecc1EG024080" mRNA join(22003456..22003904,22004054..22004328, 22004508..22004951,22005046..22005766,22007498..22007641, 22007725..22007767,22009065..22009091,22009197..22009289, 22010653..22010810,22011457..22011625,22011710..22011832, 22012241..22012360,22013053..22013073,22013564..22013622, 22013786..22013876,22014105..22015054) /locus_tag="TCM_024080" /product="PQ-loop repeat family protein / transmembrane family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g27330.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021647t1" /inference="similar to AA sequence:ricco:29601.m000438" /note="quality class is medium, express is weak, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.32 coverage" CDS join(22003621..22003904,22004054..22004328, 22004508..22004951,22005046..22005766,22007498..22007641, 22007725..22007767,22009065..22009091,22009197..22009289, 22010653..22010810,22011457..22011625,22011710..22011832, 22012241..22012360,22013053..22013073,22013564..22013622, 22013786..22013876,22014105..22014185) /locus_tag="TCM_024080" /note="dbxref ricco:29601.m000438; paralog of Thecc1EG021647t1" /codon_start=1 /product="PQ-loop repeat family protein / transmembrane family protein" /protein_id="EOY08838.1" /db_xref="TAIR:AT2G41050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IGD5" /translation="MSKNLAYIDLSHNKLTGEVQSYDWKGLQNLTHIDLSHNSLYGNI PSSLLALQLLKKVKLSNIQFNGKVLDVPNAPQSLLDTLDLSSNQLQGPIPNYSTLASF PKITRLELASCGLKVFPDLKNQARLTYLDLSDNQISGEVPNWIWNVGNGLLQHLNLSF DQLVSLQKPYQIPGLSVLDLHSNKLSVLDLSNSSLTGAIPKCLIERIVSLGVPNLRGN SLSGNIPDAFLSHCSIQTLNVNGYELEGKIPRSLARCKMLEVLDLGNNRISDSFPCHL KNISTLRILVLRANEFHGKIGCPAIMAPRPKHQIVDIAHHSFNGRLPEKWLTTWEAMM VTMKGLTMELVKILTVFSSIDFLCNKFEGLIPNVIGEFKALYALNLSHNAFTGAIPPS LRKLQQLESLDLSSNNLCGSIPQQLAKLNFLAFLDLSHNQLGGRIPKGNQFRWLSDDS FDNNGGLCGPPLEAKCQSPDSPSLEILKLGSRSTRAEAGSDIRWNFISADIGFFSGLG IVIAPLIFWKRWRIWYYKHIDRALFSLFPRLESSPESEEEAQATMERSRESMKRFLAS SFVVFSCFCARDEGSFALGLISIISWSVAEIPQIITNYKEKSVQGFSLGFLITWIVGD LFNLFGCILEPATLPTQYHMAVLYTMTSSILAAQTVYYGHIYPRLKFKGVCHKGSKEH QPEAVEKVGEQINNLDVKQVIDADRLSSPIPLPAINVKSSPGREFYYMSARSLSTSHT PTEGSFLARRMTTPFHTRNSVEEPLLSAHVSTQTASPPSTKSLLCLVSALMFIATFNF QLSAFNKLHLKPEIINQGFAIQIGRKLLQVNAASLGESGIGGGSRVGTFLGWAMAAIY MGGRLPQICLNIRRGNVEGLNPFMFVFALVGNSTYVASILVKSTDWSRIRPNLPWLVD AGGCVLLDIFILIQFLYFCYWAPQGAEYKHENLNAS" mobile_element complement(22016351..22016441) /note="source:CACAO_M_E44210_F112_scaffold_5 12582 12913" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(22016442..22017980) /note="source:CACAO_M_E69938_F9_scaffold_9 4733 6264" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22017981..22018440) /note="source:CACAO_M_E44210_F112_scaffold_5 10879 12581" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(22019043..22019376) /note="source:CACAO_M_E69938_F9_scaffold_9 3533 3809" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 22023282..22031113 /locus_tag="TCM_024082" /note="dbxref CacaoGD:Thecc1EG024082" mRNA join(22023282..22023318,22023529..22023800, 22023885..22023927,22024993..22025019,22025136..22025228, 22026797..22026918,22027586..22027754,22027840..22027962, 22028370..22028489,22029182..22029202,22029794..22029852, 22030011..22030101,22030333..22030441,22030626..22030959) /locus_tag="TCM_024082" /product="PQ-loop repeat family protein / transmembrane family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s02400.1" /inference="alignment:exonerate- protein:2:TAIR:AT2G41050.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024080t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s02400.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc351t6; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc343t9" mRNA join(22023384..22023438,22023529..22023800, 22023885..22023927,22024993..22025019,22025136..22025228, 22026797..22026918,22027586..22027754,22027840..22027962, 22028370..22028489,22029182..22029202,22029794..22029852, 22030008..22030101,22030333..22030441,22030626..22030769) /locus_tag="TCM_024082" /product="PQ-loop repeat family protein / transmembrane family protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s02400.1" /inference="alignment:exonerate- protein:2:TAIR:AT2G41050.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024080t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s02400.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4866t3; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc343t9" mRNA join(22023552..22023800,22023885..22023927, 22024480..22024522,22024993..22025046,22025131..22025228, 22026797..22026918,22027586..22027754,22027840..22027962, 22028370..22028489,22029182..22029202,22029794..22029852, 22030011..22030101,22030333..22031113) /locus_tag="TCM_024082" /product="PQ-loop repeat family protein / transmembrane family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT2G41050.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024080t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s02400.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc343t9" CDS join(22023583..22023800,22023885..22023927, 22024480..22024522,22024993..22025046,22025131..22025228, 22026797..22026918,22027586..22027754,22027840..22027962, 22028370..22028489,22029182..22029202,22029794..22029852, 22030011..22030101,22030333..22030413) /locus_tag="TCM_024082" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG024080t1" /codon_start=1 /product="PQ-loop repeat family protein / transmembrane family protein, putative isoform 1" /protein_id="EOY08839.1" /db_xref="Phytozome:POPTR_0016s02400.1" /db_xref="TAIR:AT2G41050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IHG0" /translation="MAITCPRRRECWEWARVYINYCICSARDEGSFALGLISVISWSV AEIPQIITNYKEKSIEGLSLGFLITWIVGDLFNLFGCILEPATMMDENTFNCLVYAEA SDTILYGSSKNMLNPKCSQLYTMTTSILAAQTVYYGHIYPRLKYKRVCHKDSKEHQPE AVEKVIDADRLSSPIPLPAINVKSSPGRELYYMSARSLSRSHTPTAGSFLVQRMTPPS HTRSSVEEPLLSAHVSAQSASPPSSKSLLCLVSVLMFIATFNSQLSAFNKLHIEHKIV NQGFVIQIGRKLLQVNAASLGESGIGGGSRVGTFLGWAMATIYMGGRLPQICLNIRRG NVEGLNPFMFMFALVGNSTYVASILVESTDWSRIRPNLPWLVDAAGCVLLDTFILIQF IYFCYWAPQDAENKHENLNAS" CDS join(22023583..22023800,22023885..22023927, 22024993..22025019,22025136..22025228,22026797..22026918, 22027586..22027754,22027840..22027962,22028370..22028489, 22029182..22029202,22029794..22029852,22030008..22030101, 22030333..22030413) /locus_tag="TCM_024082" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG024080t1" /codon_start=1 /product="PQ-loop repeat family protein / transmembrane family protein, putative isoform 3" /protein_id="EOY08841.1" /db_xref="Phytozome:POPTR_0016s02400.1" /db_xref="TAIR:AT2G41050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IHG0" /translation="MAITCPRRRECWEWARVYINYCICSARDEGSFALGLISVISWSV AEIPQIITNYKEKSIEGLSLGFLITWIVGDLFNLFGCILEPATLPTQFYMAVLYTMTT SILAAQTVYYGHIYPRLKYKRVCHKDSKEHQPEAVEKVIDADRLSSPIPLPAINVKSS PGRELYYMSARSLSRSHTPTAGSFLVQRMTPPSHTRSSVEEPLLSAHVSAQSASPPSS KSLLCLVSVLMFIATFNSQLSAFNKLHIEHKIVNQGFVIQIGRKLLQVNAASLGESGI GGGSRVGTFLGWAMATIYMGGRLPQICLNIRRGNVEGLNPFMFMFALVGNSTYVASSI LVESTDWSRIRPNLPWLVDAAGCVLLDTFILIQFIYFCYWAPQDAENKHENLNAS" CDS join(22023583..22023800,22023885..22023927, 22024993..22025019,22025136..22025228,22026797..22026918, 22027586..22027754,22027840..22027962,22028370..22028489, 22029182..22029202,22029794..22029852,22030011..22030101, 22030333..22030413) /locus_tag="TCM_024082" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG024080t1" /codon_start=1 /product="PQ-loop repeat family protein / transmembrane family protein, putative isoform 2" /protein_id="EOY08840.1" /db_xref="Phytozome:POPTR_0016s02400.1" /db_xref="TAIR:AT2G41050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IHG0" /translation="MAITCPRRRECWEWARVYINYCICSARDEGSFALGLISVISWSV AEIPQIITNYKEKSIEGLSLGFLITWIVGDLFNLFGCILEPATLPTQFYMAVLYTMTT SILAAQTVYYGHIYPRLKYKRVCHKDSKEHQPEAVEKVIDADRLSSPIPLPAINVKSS PGRELYYMSARSLSRSHTPTAGSFLVQRMTPPSHTRSSVEEPLLSAHVSAQSASPPSS KSLLCLVSVLMFIATFNSQLSAFNKLHIEHKIVNQGFVIQIGRKLLQVNAASLGESGI GGGSRVGTFLGWAMATIYMGGRLPQICLNIRRGNVEGLNPFMFMFALVGNSTYVASIL VESTDWSRIRPNLPWLVDAAGCVLLDTFILIQFIYFCYWAPQDAENKHENLNAS" gene 22031160..22032824 /locus_tag="TCM_024083" /note="dbxref CacaoGD:Thecc1EG024083" mRNA join(22031160..22031219,22032122..22032824) /locus_tag="TCM_024083" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.54 coverage" CDS 22032256..22032480 /locus_tag="TCM_024083" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08842.1" /translation="MYPEYCEQVGTNNLLGKAADFFIISRLCTNLFIQIARLLVICSS LLLLIIACQGFFSNWNKGLKMLSRSWRICR" gene complement(22032782..22034597) /locus_tag="TCM_024084" /note="dbxref CacaoGD:Thecc1EG024084" mRNA complement(join(22032782..22033408,22033890..22034037, 22034106..22034597)) /locus_tag="TCM_024084" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s02610.1" /inference="similar to AA sequence:Phytozome:GSVIVT01025860001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Newbler:10:TSA:cgbaB_g13194t00001" CDS complement(join(22033182..22033408,22033890..22034037, 22034106..22034495)) /locus_tag="TCM_024084" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08843.1" /db_xref="Phytozome:GSVIVT01025860001" /db_xref="TAIR:AT2G41120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SCF9" /translation="MALAFKLPYCSPLYSPRHSTPPCPLHFHNYNPKFFPSLPLSPSP IRTCAHSKGHRRSESLGVSYRYSSSADSKDDENCSFDEAVSLFNQREYYKCHDLLEDL WNNAEDPTRTLIHGILQCAVGFHHLFNQNHRGAMMELGEGLCKLRKMNFESGPFYDFE QDIAAVLDFIYNTQIELAACGDDLCVTMEQSERSYLLLGGYAAGQHLYHLQADPNQVM YIVFCPQRSYGSAQASAPSPRVRLPILQAAERHLSV" gene complement(22036039..22040330) /locus_tag="TCM_024085" /note="dbxref CacaoGD:Thecc1EG024085" mRNA complement(join(22036039..22036312,22036818..22037005, 22038146..22038220,22038373..22038545,22038781..22038860, 22039019..22039835)) /locus_tag="TCM_024085" /product="F-box family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s03510.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040879t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s03840.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1443t4; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1437t2" mRNA complement(join(22036039..22036312,22036818..22037011, 22038146..22038220,22038373..22038545,22038781..22038860, 22039019..22039835)) /locus_tag="TCM_024085" /product="F-box family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s03510.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040879t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s03840.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1437t2; alternateUTRof:Thecc1EG024085t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1437t2" mRNA complement(join(22036039..22036312,22036818..22037011, 22038146..22038241,22038373..22038545,22038781..22038860, 22039019..22039835)) /locus_tag="TCM_024085" /product="F-box family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s03510.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040879t2" /inference="similar to AA sequence:Phytozome:POPTR_0006s03840.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1443t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1437t2" mRNA complement(join(22036039..22036312,22036818..22037011, 22038146..22038545,22038781..22038860,22039019..22039835)) /locus_tag="TCM_024085" /product="F-box family protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s03510.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040879t2" /inference="similar to AA sequence:Phytozome:POPTR_0006s03840.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1443t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1437t2" mRNA complement(join(22036569..22037011,22038146..22038220, 22038373..22038545,22038781..22038860,22039019..22039742, 22039803..22040330)) /locus_tag="TCM_024085" /product="F-box family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s03510.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040879t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s03840.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1437t2" CDS complement(join(22036824..22037005,22038146..22038220, 22038373..22038545,22038781..22038860,22039019..22039690)) /locus_tag="TCM_024085" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG040879t1" /codon_start=1 /product="F-box family protein isoform 4" /protein_id="EOY08847.1" /db_xref="Phytozome:POPTR_0006s03840.1" /db_xref="TAIR:AT2G32560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B633" /translation="MLLFLISCFSFILLSKSLSFKNQYPRMKGEWRLLSPWFWEGFSS FMVSWFQKGRLGICFYQLPMILTLRKKMRLGPKVDNVEEERISLLDLPELTLECILER LSPAGLCSMAGVCSSFRERCTSDHLWEKHMKQKWGKVIGDAAHREWQWHIASRKRPNL LGPSKQKGFLGSLTNMWPFSWFTPNLEGSSSQRKTDLPNDSMMSWYLSLETGKFWFPA QVYNRENGHAGFMLSCYDAKLCYDSKTDTFQARYSPHGQRTTEEYISWDRLRVPPVDT PSHVLHISDCIPDLKPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGAENHCRCQYTV ILEFNQYPASSRWRKTIINRKDHREVGNEADGFYGGIRKLCKEEEILMWKRLWPNQVL E" CDS complement(join(22036824..22037011,22038146..22038220, 22038373..22038545,22038781..22038860,22039019..22039690)) /locus_tag="TCM_024085" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG040879t1" /codon_start=1 /product="F-box family protein isoform 1" /protein_id="EOY08844.1" /db_xref="Phytozome:POPTR_0006s03840.1" /db_xref="TAIR:AT2G32560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HR59" /translation="MLLFLISCFSFILLSKSLSFKNQYPRMKGEWRLLSPWFWEGFSS FMVSWFQKGRLGICFYQLPMILTLRKKMRLGPKVDNVEEERISLLDLPELTLECILER LSPAGLCSMAGVCSSFRERCTSDHLWEKHMKQKWGKVIGDAAHREWQWHIASRKRPNL LGPSKQKGFLGSLTNMWPFSWFTPNLEGSSSQRKTDLPNDSMMSWYLSLETGKFWFPA QVYNRENGHAGFMLSCYDAKLCYDSKTDTFQARYSPHGQRTTEEYISWDRLRVPPVDT PSHVLHISDCIPDLKPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGAENHCRCQYTD AVILEFNQYPASSRWRKTIINRKDHREVGNEADGFYGGIRKLCKEEEILMWKRLWPNQ VLE" CDS complement(join(22036824..22037011,22038146..22038220, 22038373..22038545,22038781..22038860,22039019..22039690)) /locus_tag="TCM_024085" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG040879t1" /codon_start=1 /product="F-box family protein isoform 1" /protein_id="EOY08846.1" /db_xref="Phytozome:POPTR_0006s03840.1" /db_xref="TAIR:AT2G32560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HR59" /translation="MLLFLISCFSFILLSKSLSFKNQYPRMKGEWRLLSPWFWEGFSS FMVSWFQKGRLGICFYQLPMILTLRKKMRLGPKVDNVEEERISLLDLPELTLECILER LSPAGLCSMAGVCSSFRERCTSDHLWEKHMKQKWGKVIGDAAHREWQWHIASRKRPNL LGPSKQKGFLGSLTNMWPFSWFTPNLEGSSSQRKTDLPNDSMMSWYLSLETGKFWFPA QVYNRENGHAGFMLSCYDAKLCYDSKTDTFQARYSPHGQRTTEEYISWDRLRVPPVDT PSHVLHISDCIPDLKPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGAENHCRCQYTD AVILEFNQYPASSRWRKTIINRKDHREVGNEADGFYGGIRKLCKEEEILMWKRLWPNQ VLE" CDS complement(join(22038231..22038241,22038373..22038545, 22038781..22038860,22039019..22039690)) /locus_tag="TCM_024085" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG040879t2" /codon_start=1 /product="F-box family protein isoform 2" /protein_id="EOY08845.1" /db_xref="Phytozome:POPTR_0006s03840.1" /db_xref="TAIR:AT2G32560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HR59" /translation="MLLFLISCFSFILLSKSLSFKNQYPRMKGEWRLLSPWFWEGFSS FMVSWFQKGRLGICFYQLPMILTLRKKMRLGPKVDNVEEERISLLDLPELTLECILER LSPAGLCSMAGVCSSFRERCTSDHLWEKHMKQKWGKVIGDAAHREWQWHIASRKRPNL LGPSKQKGFLGSLTNMWPFSWFTPNLEGSSSQRKTDLPNDSMMSWYLSLETGKFWFPA QVYNRENGHAGFMLSCYDAKLCYDSKTDTFQARYSPHGQRTTEEYISWDRLRVPPVDT PSHVLHISDCIPDLKPGDHIEIQWRRNKEFPYVGA" CDS complement(join(22038341..22038545,22038781..22038860, 22039019..22039690)) /locus_tag="TCM_024085" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG040879t2" /codon_start=1 /product="F-box family protein isoform 5" /protein_id="EOY08848.1" /db_xref="Phytozome:POPTR_0006s03840.1" /db_xref="TAIR:AT2G32560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HR59" /translation="MLLFLISCFSFILLSKSLSFKNQYPRMKGEWRLLSPWFWEGFSS FMVSWFQKGRLGICFYQLPMILTLRKKMRLGPKVDNVEEERISLLDLPELTLECILER LSPAGLCSMAGVCSSFRERCTSDHLWEKHMKQKWGKVIGDAAHREWQWHIASRKRPNL LGPSKQKGFLGSLTNMWPFSWFTPNLEGSSSQRKTDLPNDSMMSWYLSLETGKFWFPA QVYNRENGHAGFMLSCYDAKLCYDSKTDTFQARYSPHGQRTTEEYISWDRLRVPPVDT PSHVLHISDCIPDLKPGDHIEIQWRRNKEFPYGEFPHIRSDL" mobile_element 22044529..22044603 /note="source:CACAO_M_E69800_F12_scaffold_9 14421 14501" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22045928..22050614) /note="source:CACAO_M_S_E6076_F9_scaffold_2 7340 11992" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(22048797..22049801) /locus_tag="TCM_024087" /note="dbxref CacaoGD:Thecc1EG024087" mRNA complement(join(22048797..22049314,22049450..22049801)) /locus_tag="TCM_024087" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008785t1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.40 coverage" CDS complement(join(22048923..22049314,22049450..22049735)) /locus_tag="TCM_024087" /note="paralog of Thecc1EG008785t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08849.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B5G7" /translation="MAPKRSKPSSSGSFDRSKFISVEAFTRYHTSLINQRPIPERGIE IPILPYKEINDMIHDRYWCQFCHQPDATVVPVVREFYANVVEHVDGVAFVRGAQWKTS HDEPVSFKRSVMKKELQVWLHFVAARLLSSTHISDVTKDRAVLIYAIVAHKSIDVGKV ISHAILHTGRTKRDGIGFPSLITALCARAGVQWSDKEQLQQPKLPITMGILQRLEEFT QVAGSSS" mobile_element complement(22054052..22054174) /note="source:CACAO_M_E3884_F22_scaffold_1 13072 13197" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22056651..22059851 /note="source:CACAO_PIF_E62_scaffold_2 7094 10322" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 22059852..22062836 /note="source:CACAO_M_S_E65679_F7_scaffold_5 1 2985" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22062837..22063938 /note="source:CACAO_PIF_E62_scaffold_2 10318 11420" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 22063918..22064984 /note="source:CACAO_Mutator_E592_scaffold_3 8477 9599" /mobile_element_type="transposon:TIR/Mutator" mobile_element 22064984..22065051 /note="source:CACAO_PIF_E62_scaffold_2 13875 13942" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 22065006..22065229 /note="source:CACAO_Mutator_E1320_scaffold_6 2002 2244" /mobile_element_type="transposon:TIR/Mutator" mobile_element 22065047..22065390 /note="source:CACAO_PIF_E62_scaffold_2 16126 16471" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(22065444..22065556) /note="source:CACAO_Mutator_E1018_scaffold_5 503 615" /mobile_element_type="transposon:TIR/Mutator" mobile_element 22065572..22065749 /note="source:CACAO_Mutator_E1018_scaffold_5 467 644" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(22065754..22066057) /note="source:CACAO_PIF_E119_scaffold_3 7816 8119" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 22066062..22066808 /note="source:CACAO_Mutator_E592_scaffold_3 8827 9542" /mobile_element_type="transposon:TIR/Mutator" mobile_element 22066250..22068400 /note="source:CACAO_PIF_E62_scaffold_2 11880 13972" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(22068407..22069549) /note="source:CACAO_on_E506_scaffold_4 4281 5104" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 22069589..22071967 /note="source:CACAO_PIF_E62_scaffold_2 14336 16707" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(22071064..22074556) /note="source:CACAO_PIF_E119_scaffold_3 9834 13331" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(22075494..22078500) /note="source:CACAO_PIF_E119_scaffold_3 6785 9851" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 22081977..22082519 /note="source:CACAO_M_S_E1495_F60_scaffold_1 7130 7671" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22083012..22083289 /note="source:CACAO_M_S_E64023_F13_scaffold_5 18556 18833" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22083865..22084267) /note="source:INTACT265_F12_scaffold_7-int 6313 6715" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22086189..22089067 /note="source:scaffold_10_CACTA_0127 16126 19026" /mobile_element_type="transposon:TIR/CACTA" gene complement(22091229..22095876) /locus_tag="TCM_024094" /note="dbxref CacaoGD:Thecc1EG024094" mRNA complement(join(22091229..22091582,22092226..22092386, 22092665..22092935,22093157..22093167,22095657..22095876)) /locus_tag="TCM_024094" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.22 coverage" CDS complement(join(22091451..22091582,22092226..22092386, 22092665..22092935,22093157..22093159)) /locus_tag="TCM_024094" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08850.1" /translation="MLFEVCKGTKVIHLYLDLILAVPLQTKEFSKSFIAKSAGACAFI GPMNAALGASRGEIGEFNYSVLDASTSSGDGEGRVGEIEVEVGTSSKGIDVEEGNQDS DKFDKEGRAIDRSLKGIPYVHDENGKVLVIKNMLFTNVHHFRELENDDSWSWFLNLVN TVIRDFNKPLVVMSNGQKVNPKLLLLST" mobile_element complement(22097131..22098848) /note="source:CACAO_M_E69946_F329_scaffold_9 3739 5445" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 22098812..22098848 /note="source:scaffold_2_CACTA_0262 5389 5418" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22098849..22101636 /note="source:CACAO_M_E1809_F322_scaffold_1 1 2817" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22101637..22105362) /note="source:CACAO_M_E69946_F329_scaffold_9 1 3743" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(22106023..22107165) /note="source:CACAO_M_E59483_F369_scaffold_9 1499 2719" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22107299..22107410) /note="source:CACAO_M_E5546_F369_scaffold_2 1256 1366" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22107363..22107442 /note="source:INTACT146F_F14_scaffold_2-int 13476 13561" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22107541..22107779) /note="source:CACAO_M_E5892_F98_scaffold_2 9662 9905" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22107572..22108997 /note="source:CACAO_M_E59656_F369_scaffold_9 1247 2669" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22111972..22112047) /note="source:INTACT537_F22_scaffold_2-int 16903 16981" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22112056..22112170 /note="source:scaffold_2_CACTA_0262 3868 3981" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22112110..22112261) /note="source:INTACT336_F12_scaffold_2-int 743 872" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22116678..22116736) /note="source:CACAO_M_E42348_F54_scaffold_5 1158 1216" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22116683..22116746 /note="source:CACAO_M_E34934_F98_scaffold_5 2039 2101" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22117517..22118015) /note="source:CACAO_M_E24592_F195_scaffold_4 20384 20863" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22117646..22118086 /note="source:CACAO_M_E1841_F5_scaffold_1 9103 9514" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22119322..22119394) /note="source:CACAO_M_S_E118952_F230_scaffold_9 1741 1814" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22119637..22119744 /note="source:INTACT786_F333_scaffold_7-int 346 448" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22121463..22121600 /note="source:INTACT904F_F49_scaffold_6-int 13840 13959" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22124038..22125827 /note="source:INTACT904F_F49_scaffold_6-int 3155 5066" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22126134..22126568 /note="source:INTACT336_F12_scaffold_2-int 7626 8052" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22126576..22127274 /note="source:CACAO_M_E43375_F98_scaffold_5 1 699" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22127585..22129329 /note="source:CACAO_M_E43375_F98_scaffold_5 700 2444" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22129274..22129338) /note="source:CACAO_on_S_E58_scaffold_2 1932 1995" /mobile_element_type="transposon:TIR/Mutator" mobile_element 22129335..22130266 /note="source:INTACT336_F12_scaffold_2-int 8061 9020" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22130580..22131065 /note="source:INTACT336_F12_scaffold_2-int 9042 9443" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22131487..22131642) /note="source:scaffold_2_CACTA_0262 5259 5415" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22131643..22131684 /note="source:INTACT904F_F49_scaffold_6-int 13791 13959" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22131832..22131933) /note="source:CACAO_PIF_E119_scaffold_3 7786 7883" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(22132675..22132808) /note="source:scaffold_2_CACTA_0262 4326 4477" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22132806..22132940) /note="source:scaffold_2_CACTA_0262 3313 3437" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22135422..22137325 /note="source:scaffold_9_CACTA_0931 15825 17766" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22137323..22138038 /note="source:CACAO_M_E22186_F143_scaffold_3 8576 9255" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(22139624..22149908) /locus_tag="TCM_024098" /note="dbxref CacaoGD:Thecc1EG024098" mRNA complement(join(22139624..22140427,22140638..22140706, 22140811..22140908,22143663..22143803,22143932..22144843, 22148345..22148489,22149661..22149873)) /locus_tag="TCM_024098" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033643001" /inference="similar to AA sequence:Phytozome:GSVIVT01033643001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:PASA:2:TSA:puevd3b023307t1a4; alternateUTRof:Thecc1EG024098t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13856t2" mRNA complement(join(22139624..22140462,22140638..22140706, 22140811..22140908,22143663..22143803,22143932..22144843, 22148345..22148489,22149661..22149873)) /locus_tag="TCM_024098" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033643001" /inference="similar to AA sequence:Phytozome:POPTR_0006s03830.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:PASA:2:TSA:puevd3b023307t1a2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13856t2" mRNA complement(join(22139624..22140427,22140638..22140706, 22140811..22140908,22143663..22143803,22143932..22144843, 22148345..22148489,22149655..22149765)) /locus_tag="TCM_024098" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033643001" /inference="similar to AA sequence:Phytozome:GSVIVT01033643001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13856t2" CDS complement(join(22140266..22140427,22140638..22140706, 22140811..22140908,22143663..22143803,22143932..22144843, 22148345..22148477)) /locus_tag="TCM_024098" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY08851.1" /db_xref="Phytozome:GSVIVT01033643001" /translation="MDSNLQTSPPDGSDAKAAFRKFSNDASNRQYRRHSPISRSSSSE GNSPQRDRSVSPILSRDDLAKGADTQPGRDGRELDRDSSRNKYSRNSDSYRYSDRQSS RSSHGYSRHDNYVRHDKFADEGSKYDRLSSRSGRESRFSTHSDHPRQESDISRSKDYS RNADKYSRDRYDGSGHRIRDKEKESQSLEHQKYKDKDSALDRAGSGRRQGSSFSEEMD RDRRRRGRDSRGEKGDYHRSSGDRKGDYTESYEESRGHRNDSSSGRERDNDKYRRKEG YKSGLKEIDGQKPAKERMKHDEWETNMEKDRYGGVLKEQCEEKSIFVGKNQESPAKKL KLFSSSKGNEYDKDADEKRSSLEQAEETDGRVTMGQAHGNDVDITNDINSAKVAAMKA AELVNRNLIGAGHSNMTTEQKKKLLWGSKKSTPAEESGHRWDTALFGDRERQEKFNKL MGVKGEVKVEQKPENQDGSGLLQAEKQREVQQDLEKQYTAGLRRRDGRTVGLGL" CDS complement(join(22140266..22140427,22140638..22140706, 22140811..22140908,22143663..22143803,22143932..22144843, 22148345..22148477)) /locus_tag="TCM_024098" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY08855.1" /db_xref="Phytozome:GSVIVT01033643001" /translation="MDSNLQTSPPDGSDAKAAFRKFSNDASNRQYRRHSPISRSSSSE GNSPQRDRSVSPILSRDDLAKGADTQPGRDGRELDRDSSRNKYSRNSDSYRYSDRQSS RSSHGYSRHDNYVRHDKFADEGSKYDRLSSRSGRESRFSTHSDHPRQESDISRSKDYS RNADKYSRDRYDGSGHRIRDKEKESQSLEHQKYKDKDSALDRAGSGRRQGSSFSEEMD RDRRRRGRDSRGEKGDYHRSSGDRKGDYTESYEESRGHRNDSSSGRERDNDKYRRKEG YKSGLKEIDGQKPAKERMKHDEWETNMEKDRYGGVLKEQCEEKSIFVGKNQESPAKKL KLFSSSKGNEYDKDADEKRSSLEQAEETDGRVTMGQAHGNDVDITNDINSAKVAAMKA AELVNRNLIGAGHSNMTTEQKKKLLWGSKKSTPAEESGHRWDTALFGDRERQEKFNKL MGVKGEVKVEQKPENQDGSGLLQAEKQREVQQDLEKQYTAGLRRRDGRTVGLGL" mRNA complement(join(22140399..22140456,22140638..22140706, 22140811..22140908,22143663..22143803,22143932..22144843, 22148345..22148489,22149655..22149908)) /locus_tag="TCM_024098" /product="Uncharacterized protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033643001" /inference="similar to AA sequence:Phytozome:POPTR_0006s03830.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc422t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13856t2; inference alignment:Newbler:10:TSA:cgbaL_g05515t00001" mRNA complement(join(<22140399..22140464,22140638..22140706, 22140811..22140908,22143663..22143803,22143932..22144843, 22148345..22148489,22149655..22149908)) /locus_tag="TCM_024098" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033643001" /inference="similar to AA sequence:Phytozome:POPTR_0006s03830.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc422t4; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13856t2; inference alignment:Newbler:10:TSA:cgbaL_g05515t00001" CDS complement(join(<22140399..22140464,22140638..22140706, 22140811..22140908,22143663..22143803,22143932..22144843, 22148345..22148477)) /locus_tag="TCM_024098" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY08852.1" /db_xref="Phytozome:POPTR_0006s03830.1" /translation="MDSNLQTSPPDGSDAKAAFRKFSNDASNRQYRRHSPISRSSSSE GNSPQRDRSVSPILSRDDLAKGADTQPGRDGRELDRDSSRNKYSRNSDSYRYSDRQSS RSSHGYSRHDNYVRHDKFADEGSKYDRLSSRSGRESRFSTHSDHPRQESDISRSKDYS RNADKYSRDRYDGSGHRIRDKEKESQSLEHQKYKDKDSALDRAGSGRRQGSSFSEEMD RDRRRRGRDSRGEKGDYHRSSGDRKGDYTESYEESRGHRNDSSSGRERDNDKYRRKEG YKSGLKEIDGQKPAKERMKHDEWETNMEKDRYGGVLKEQCEEKSIFVGKNQESPAKKL KLFSSSKGNEYDKDADEKRSSLEQAEETDGRVTMGQAHGNDVDITNDINSAKVAAMKA AELVNRNLIGAGHSNMTTEQKKKLLWGSKKSTPAEESGHRWDTALFGDRERQEKFNKL MSLRLRWYLWPIVGCERGGEGGA" CDS complement(join(22140421..22140456,22140638..22140706, 22140811..22140908,22143663..22143803,22143932..22144843, 22148345..22148477)) /locus_tag="TCM_024098" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY08854.1" /db_xref="Phytozome:POPTR_0006s03830.1" /db_xref="TAIR:AT3G56720.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TIR0" /translation="MDSNLQTSPPDGSDAKAAFRKFSNDASNRQYRRHSPISRSSSSE GNSPQRDRSVSPILSRDDLAKGADTQPGRDGRELDRDSSRNKYSRNSDSYRYSDRQSS RSSHGYSRHDNYVRHDKFADEGSKYDRLSSRSGRESRFSTHSDHPRQESDISRSKDYS RNADKYSRDRYDGSGHRIRDKEKESQSLEHQKYKDKDSALDRAGSGRRQGSSFSEEMD RDRRRRGRDSRGEKGDYHRSSGDRKGDYTESYEESRGHRNDSSSGRERDNDKYRRKEG YKSGLKEIDGQKPAKERMKHDEWETNMEKDRYGGVLKEQCEEKSIFVGKNQESPAKKL KLFSSSKGNEYDKDADEKRSSLEQAEETDGRVTMGQAHGNDVDITNDINSAKVAAMKA AELVNRNLIGAGHSNMTTEQKKKLLWGSKKSTPAEESGHRWDTALFGDRERQEKFNKL MVALVPMANCRV" CDS complement(join(22140421..22140462,22140638..22140706, 22140811..22140908,22143663..22143803,22143932..22144843, 22148345..22148477)) /locus_tag="TCM_024098" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY08853.1" /db_xref="Phytozome:POPTR_0006s03830.1" /db_xref="TAIR:AT3G56720.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TIR0" /translation="MDSNLQTSPPDGSDAKAAFRKFSNDASNRQYRRHSPISRSSSSE GNSPQRDRSVSPILSRDDLAKGADTQPGRDGRELDRDSSRNKYSRNSDSYRYSDRQSS RSSHGYSRHDNYVRHDKFADEGSKYDRLSSRSGRESRFSTHSDHPRQESDISRSKDYS RNADKYSRDRYDGSGHRIRDKEKESQSLEHQKYKDKDSALDRAGSGRRQGSSFSEEMD RDRRRRGRDSRGEKGDYHRSSGDRKGDYTESYEESRGHRNDSSSGRERDNDKYRRKEG YKSGLKEIDGQKPAKERMKHDEWETNMEKDRYGGVLKEQCEEKSIFVGKNQESPAKKL KLFSSSKGNEYDKDADEKRSSLEQAEETDGRVTMGQAHGNDVDITNDINSAKVAAMKA AELVNRNLIGAGHSNMTTEQKKKLLWGSKKSTPAEESGHRWDTALFGDRERQEKFNKL MSEVALVPMANCRV" mobile_element 22152920..22155873 /note="source:CACAO_M_E43380_F143_scaffold_5 1 2954" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 22162439..22167353 /locus_tag="TCM_024099" /note="dbxref CacaoGD:Thecc1EG024099" mRNA join(22162439..22162649,22163995..22164047, 22165092..22165276,22166959..22167353) /locus_tag="TCM_024099" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.13 coverage" CDS join(22162470..22162649,22163995..22164047, 22165092..22165276,22166959..22166960) /locus_tag="TCM_024099" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08856.1" /translation="MHTFSRVKVNSPQAVTMVCEKCTPSCKNSTPYFNSVFPMNTEFY NDSYNIKDYSIAESSHGANYTKCFRLSKQGSAQGTVLQKNYTKGIPSTEVPKGVPSME ALRGIQIVEMPWGVPSTKALRRVQSVETPKNKHKTAV" mobile_element 22164926..22164978 /note="source:CACAO_M_E22186_F143_scaffold_3 9952 10004" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22170798..22172912) /note="source:CACAO_M_S_E33443_F143_scaffold_4 843 2958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22172913..22183856 /note="source:INTACT708_F15_scaffold_5-int 1 10912" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22183857..22184671 /note="source:CACAO_M_E22186_F143_scaffold_3 2145 2959" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22185321..22186087) /note="source:CACAO_M_E86135_F15_scaffold_13 2346 3110" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22186476..22186631 /note="source:CACAO_M_E42911_F15_scaffold_5 1150 1305" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22187874..22188427 /note="source:INTACT584_F15_scaffold_3-int 10736 11289" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22188428..22188505) /note="source:CACAO_M_E52239_F256_scaffold_7 8103 8312" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22189050..22192254) /note="source:INTACT88_F12_scaffold_4-int 10776 13990" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22193183..22195873 /note="source:CACAO_M_E43388_F345_scaffold_5 1 2691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22197192..22199913 /note="source:CACAO_M_E43391_F98_scaffold_5 1 2722" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22209034..22209355) /note="source:INTACT189_F49_scaffold_5-int 19301 19620" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22210315..22211001) /note="source:INTACT189_F49_scaffold_5-int 17569 18253" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22211090..22211682) /note="source:INTACT189_F49_scaffold_5-int 16970 17571" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22211673..22213229) /note="source:INTACT189_F49_scaffold_5-int 15133 16684" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22213437..22213818) /note="source:INTACT39F_F22_scaffold_1-int 6809 7181" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22213896..22214070) /note="source:INTACT39F_F22_scaffold_1-int 6634 6809" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22214368..22215140) /note="source:INTACT39F_F22_scaffold_1-int 5268 6056" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22216461..22217752) /note="source:INTACT189_F49_scaffold_5-int 13809 15144" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22217753..22220858 /note="source:CACAO_M_S_E65714_F15_scaffold_5 1 3106" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22220859..22221038) /note="source:INTACT709_F15_scaffold_9-int 8038 8088" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22221033..22221662) /note="source:INTACT189_F49_scaffold_5-int 2537 3150" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22221652..22222025) /note="source:INTACT189_F49_scaffold_5-int 1994 2367" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22222390..22222734) /note="source:INTACT189_F49_scaffold_5-int 19301 19620" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22222737..22236380 /note="source:CACAO_M_S_E65716_F44_scaffold_5 1 13644" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22236381..22236460) /note="source:CACAO_M_E70891_F369_scaffold_10 2632 2711" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22237057..22245811) /note="source:CACAO_M_E42491_F52_scaffold_5 1 10927" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22245812..22246016) /note="source:INTACT189_F49_scaffold_5-int 18356 18560" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22246016..22246410) /note="source:INTACT189_F49_scaffold_5-int 17862 18253" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22248090..22250706 /note="source:CACAO_M_S_E65725_F335_scaffold_5 1 2617" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22252352..22253897) /note="source:INTACT591_F264_scaffold_1-int 19743 21282" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22263383..22264236) /note="source:scaffold_7_CACTA_0789 13923 14779" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22264578..22265399) /note="source:INTACT18_F7_scaffold_4-int 10134 10952" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22265393..22266842 /note="source:CACAO_M_S_E5285_F300_scaffold_1 13581 15007" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 22266828..22267147 /note="source:INTACT646F_F95_scaffold_5-int 10970 11293" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22267574..22267923 /note="source:INTACT646F_F95_scaffold_5-int 6420 6768" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22270105..22270372) /note="source:CACAO_M_S_E38262_F319_scaffold_4 3022 3289" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22270371..22271185 /note="source:CACAO_M_E22786_F85_scaffold_3 1510 2323" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22271178..22271875) /note="source:INTACT646F_F95_scaffold_5-int 2165 2872" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22272174..22273940) /note="source:INTACT139F_F15_scaffold_2-int 6466 8231" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22274041..22276768) /note="source:INTACT139F_F15_scaffold_2-int 3728 6456" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22276758..22278565 /note="source:CACAO_M_E3109_F15_scaffold_1 6791 8586" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22280681..22281680 /note="source:CACAO_M_E49857_F85_scaffold_7 22885 23879" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22281682..22282348 /note="source:CACAO_M_S_E83372_F14_scaffold_6 14846 15505" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22283972..22284125) /note="source:CACAO_M_S_E15347_F33_scaffold_2 6498 6675" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22285059..22287845 /note="source:CACAO_M_E13604_F90_scaffold_3 2111 7011" /mobile_element_type="retrotransposon:LTR/Copia" gene 22292727..22297556 /locus_tag="TCM_024110" /note="dbxref CacaoGD:Thecc1EG024110" mRNA join(22292727..22292994,22293690..22294278, 22295856..22297556) /locus_tag="TCM_024110" /product="Pentatricopeptide repeat-containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s03790.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s03790.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01785t00001" CDS join(22292960..22292994,22293690..22294278, 22295856..22297103) /locus_tag="TCM_024110" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat-containing protein isoform 1" /protein_id="EOY08857.1" /db_xref="Phytozome:POPTR_0006s03790.1" /db_xref="TAIR:AT1G80270.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H931" /translation="MWALRRVANPLKDRRISIQASAKLQISSNYIDGKAVIFESSQTI SDKRPSLLRFYHSRHASCNFSVGRCGLSSQAGAESSGEEDELEDGFSELETPATAEKK ENCSAQDKAEDGLISDPELSGDEEDIEETAKNELELSEDETDLSDKKSSTRRIVSELF KAVIAAPGLSVHKVLDKWLEEGKAFNRTEISVAMLNLRKRRMYGRALQLSEWLEANKQ LDFTERDYASRLDLIAKVRGLLKAEMYIEKIPKSFRGEVIYRTLLANCVVANNVKKAE EVFNKMRDLELPITSFSCNQLLLLYKRLDKKKIADVLLLMEKENVKPSLFTYKILIDT KGLSNDITGMDQIVETMKAEGVEPDIHTQSILAKHYVSGGLTEKAVEVLKGMEGDNIK ENRWACRFLLPLYADLGKAVEVERVWKVCESNPRLEEYMAAIEAWGKLNKIEEAEAVF EMMLKTWKKLPARYYASLLKVYSNHKMLQKGKDLVKRMADDGCQIGPLTWDALVKLYV EAGEVEKADSILQKACQQNQVKPMFSSFMAVMEQYSKRGDIHNSEKMFHRMRQAGYMA RLRQFQSLVQAYVNAKAPAYGIRERMKADNIFPNKALATQLAQVDAFRKNAASDLLD" mRNA join(<22292965..22292994,22293690..22294278, 22295856..22297177,22297281..22297310) /locus_tag="TCM_024110" /product="Pentatricopeptide repeat-containing protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s03790.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s03790.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc350t1; inference alignment:Newbler:10:TSA:cgbaB_g01785t00001" CDS join(<22292966..22292994,22293690..22294278, 22295856..22297103) /locus_tag="TCM_024110" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat-containing protein isoform 2" /protein_id="EOY08858.1" /db_xref="Phytozome:POPTR_0006s03790.1" /db_xref="TAIR:AT1G80270.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H931" /translation="ALRRVANPLKDRRISIQASAKLQISSNYIDGKAVIFESSQTISD KRPSLLRFYHSRHASCNFSVGRCGLSSQAGAESSGEEDELEDGFSELETPATAEKKEN CSAQDKAEDGLISDPELSGDEEDIEETAKNELELSEDETDLSDKKSSTRRIVSELFKA VIAAPGLSVHKVLDKWLEEGKAFNRTEISVAMLNLRKRRMYGRALQLSEWLEANKQLD FTERDYASRLDLIAKVRGLLKAEMYIEKIPKSFRGEVIYRTLLANCVVANNVKKAEEV FNKMRDLELPITSFSCNQLLLLYKRLDKKKIADVLLLMEKENVKPSLFTYKILIDTKG LSNDITGMDQIVETMKAEGVEPDIHTQSILAKHYVSGGLTEKAVEVLKGMEGDNIKEN RWACRFLLPLYADLGKAVEVERVWKVCESNPRLEEYMAAIEAWGKLNKIEEAEAVFEM MLKTWKKLPARYYASLLKVYSNHKMLQKGKDLVKRMADDGCQIGPLTWDALVKLYVEA GEVEKADSILQKACQQNQVKPMFSSFMAVMEQYSKRGDIHNSEKMFHRMRQAGYMARL RQFQSLVQAYVNAKAPAYGIRERMKADNIFPNKALATQLAQVDAFRKNAASDLLD" mobile_element complement(22300054..22300309) /note="source:scaffold_8_CACTA_0859 16233 16468" /mobile_element_type="transposon:TIR/CACTA" gene 22304639..22310928 /locus_tag="TCM_024111" /note="dbxref CacaoGD:Thecc1EG024111" mRNA join(22304639..22306243,22306332..22306464, 22306717..22306932,22307232..22307387,22307645..22307897, 22308620..22309020,22309526..22309642,22309735..22310928) /locus_tag="TCM_024111" /product="Glycosyl hydrolases family 31 protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s03780.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s03780.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4991t1" mRNA join(22305088..22306243,22306332..22306464, 22306717..22306932,22307232..22307387,22307645..22307897, 22308620..22309020,22309526..22309642,22309739..22310256) /locus_tag="TCM_024111" /product="Glycosyl hydrolases family 31 protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s03780.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s03780.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4991t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4991t1" CDS join(22305201..22306243,22306332..22306464, 22306717..22306932,22307232..22307387,22307645..22307897, 22308620..22309020,22309526..22309642,22309735..22310070) /locus_tag="TCM_024111" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Glycosyl hydrolases family 31 protein isoform 1" /protein_id="EOY08859.1" /db_xref="Phytozome:POPTR_0006s03780.1" /db_xref="TAIR:AT3G45940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H930" /translation="MHNQNSPTLIMSTLKITKKHHKHLNNPFPSTPRYLPSIQGNLFI NSQTLPPHQIFPVGKDFQLLWSTRNGGSISISHQSQPSKSLWSTIPGQAFMSAALAET EVEESRGSFVVKDRDVHLVCQHQTLDDIILINPFDDKDNDFLPDHLELDRLKIDSKIA DPPVLVITGHIFSKRKKKRLQSSGIYKDIKFEKREPAASARYWVLFDQKNCNQIGFQV KIGQPNFQLLHQKASPLTASGWYRRLRRKLGRYRKRKLGWSWVFTRTKGLVTVSSSEE ELGELNVAEPSAEFNRVCFTYASEGNERFFGFGEQFSRMDFKGKRVPIFVQEQGIGRG DQPITFAANLVSYRAGGDWSTTYAPSPFYMTSKMRSLYLEGYNYSIFDLTQHDRVQVQ IHGNAIQGRILHGNSPLEIIEHFTEAIGRPPKLPEWMISGAVVGMQGGTETVRCVWDK LTTYKVPISVFWLQDWVGQRETLIGSQLWWNWEVDTTRYPGWQQLVKDLSTHSIKVMT YCNPCLALMDEKPNKRRNLFEEAKELDILVRDQHGEPYMVPNTAFDVGMLDLTHPLTA NWFKQILLEMVNDGVRGWMADFGEGLPVDAVLYSGEDPISAHNRYPELWAQINREFVE EWKSNHVGNEREDPEEGLVFFMRAGFRNSPRWGMLFWEGDQMVSWQANDGIKSSVVGL LSSGLSGYAFNHSDIGGYCAINLPIIKYHRSEELLLRWMELNAFTIVFRTHEGNKPSC NSQFYSNDQTLSHFARFAKVYKAWKFYRVQLVKEAAQKGWPICRHLFLHYPDDEQVQR FSYQQFLVGSEILVVPVLDKGKKNVKAYFPVGETCTWQQIWTGKQYQKQGCEAWVEAP IGYPAVFVKVGSTVGETFLRNLRNLDIL" CDS join(22305201..22306243,22306332..22306464, 22306717..22306932,22307232..22307387,22307645..22307897, 22308620..22309020,22309526..22309642,22309739..22309849) /locus_tag="TCM_024111" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Glycosyl hydrolases family 31 protein isoform 2" /protein_id="EOY08860.1" /db_xref="Phytozome:POPTR_0006s03780.1" /translation="MHNQNSPTLIMSTLKITKKHHKHLNNPFPSTPRYLPSIQGNLFI NSQTLPPHQIFPVGKDFQLLWSTRNGGSISISHQSQPSKSLWSTIPGQAFMSAALAET EVEESRGSFVVKDRDVHLVCQHQTLDDIILINPFDDKDNDFLPDHLELDRLKIDSKIA DPPVLVITGHIFSKRKKKRLQSSGIYKDIKFEKREPAASARYWVLFDQKNCNQIGFQV KIGQPNFQLLHQKASPLTASGWYRRLRRKLGRYRKRKLGWSWVFTRTKGLVTVSSSEE ELGELNVAEPSAEFNRVCFTYASEGNERFFGFGEQFSRMDFKGKRVPIFVQEQGIGRG DQPITFAANLVSYRAGGDWSTTYAPSPFYMTSKMRSLYLEGYNYSIFDLTQHDRVQVQ IHGNAIQGRILHGNSPLEIIEHFTEAIGRPPKLPEWMISGAVVGMQGGTETVRCVWDK LTTYKVPISVFWLQDWVGQRETLIGSQLWWNWEVDTTRYPGWQQLVKDLSTHSIKVMT YCNPCLALMDEKPNKRRNLFEEAKELDILVRDQHGEPYMVPNTAFDVGMLDLTHPLTA NWFKQILLEMVNDGVRGWMADFGEGLPVDAVLYSGEDPISAHNRYPELWAQINREFVE EWKSNHVGNEREDPEEGLVFFMRAGFRNSPRWGMLFWEGDQMVSWQANDGIKSSVVGL LSSGLSGYAFNHSDIGGYCAINLPIIKYHRSEELLLRWMELNAFTIVFRTHEGNKPSC NSQFYSNDQTLSHFARFAKVYKAWKFYRVQLVKLLKRAGLSAVTYFFTTQMMSRFRGS VTSSSWWAVRS" gene complement(22309791..22324555) /locus_tag="TCM_024112" /note="dbxref CacaoGD:Thecc1EG024112" mRNA complement(join(22309791..22309855,22309948..22310046, 22310679..22311245,22311566..22311696,22312949..22313054, 22313144..22313197,22313271..22313387,22313473..22313586, 22315112..22315179,22316828..22316942,22317088..22317216, 22317350..22317448,22317925..22318066,22318434..22318504, 22319946..22320056,22320253..22320329,22320420..22320570, 22321582..22321683,22322795..22322851,22323274..22323387, 22323467..22323547,22323651..22323792,22324178..22324555)) /locus_tag="TCM_024112" /product="Dna gyrase b2 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29733.m000744" /inference="similar to AA sequence:ricco:29733.m000744" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04360t00001" mRNA complement(join(22310819..22311245,22311564..22311696, 22312948..22313054,22313141..22313197,22313271..22313388, 22313473..22313586,22315112..22315179,22316828..22316942, 22317088..22317216,22317350..22317448,22317925..22318066, 22318434..22318504,22319946..22320056,22320253..22320329, 22320420..22320570,22321582..22321683,22322795..22322851, 22323274..22323387,22323467..22323547,22323651..22323792, 22324178..22324414)) /locus_tag="TCM_024112" /product="DNA gyrase subunit B isoform 2" /inference="alignment:exonerate- protein:2:ricco:29733.m000744" /inference="similar to AA sequence:ricco:29733.m000744" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4989t9; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc743t7; inference alignment:Newbler:10:TSA:cgbaP2_g04360t00001" CDS complement(join(22311177..22311245,22311566..22311696, 22312949..22313054,22313144..22313197,22313271..22313387, 22313473..22313586,22315112..22315179,22316828..22316942, 22317088..22317216,22317350..22317448,22317925..22318066, 22318434..22318504,22319946..22320056,22320253..22320329, 22320420..22320570,22321582..22321683,22322795..22322851, 22323274..22323387,22323467..22323547,22323651..22323792, 22324178..22324308)) /locus_tag="TCM_024112" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29733.m000744" /codon_start=1 /product="Dna gyrase b2 isoform 1" /protein_id="EOY08861.1" /db_xref="TAIR:AT5G04130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94BZ7" /translation="MALLLRYPYLHLRLMASSSRFFLHSPCFHSLASLPRSSLFFKPR KSFALRSICRLPVQNVVTPKAFMSSNITTEAFQGSKSSKAYNSEQIQVLEGLDPVRKR PGMYIGSTGPRGLHHLVYEILDNAVDEAQAGFATQINVVLLSDGSVSITDNGRGIPTD LHPITKKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSETLEVTVWRD GMEYEQKYSRGKPVSTLTCHVLSTESKHRQGTCIRFWPDKEIFTTAIEFDYNTLAGRI RELAFLNPKLTITLKKEDNNPEKSLYNEYFFAGGLVEYVKWLNTDKKPLHDVLGFSRR IDGATIDVALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNNLGKKSKVI KDKDISLSGEHVREGLTCIISVKIPNPEFEGQTKTRLGNPEVRKVVDQSVQEFLAEFL ELHPDVLDSILSKSLNAFKAALAAKRARELVRQKSVLKSSSLPGKLADCSSTNPEESE IFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLG VKGEDFKKENLRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDEGCIYVGVPPLY KVERGKQVYYCYDDSDLKRVQSMFPQNASYNIQRFKGLGEMMPAQLWETTMDPDQRLL KQLVVEDAAEANMVFSSLMGARVDARKELIQNSASKINLDKLDI" CDS complement(join(22313374..22313388,22313473..22313586, 22315112..22315179,22316828..22316942,22317088..22317216, 22317350..22317448,22317925..22318066,22318434..22318504, 22319946..22320056,22320253..22320329,22320420..22320570, 22321582..22321683,22322795..22322851,22323274..22323387, 22323467..22323547,22323651..22323792,22324178..22324308)) /locus_tag="TCM_024112" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29733.m000744" /codon_start=1 /product="DNA gyrase subunit B isoform 2" /protein_id="EOY08862.1" /db_xref="TAIR:AT5G04130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94BZ7" /translation="MALLLRYPYLHLRLMASSSRFFLHSPCFHSLASLPRSSLFFKPR KSFALRSICRLPVQNVVTPKAFMSSNITTEAFQGSKSSKAYNSEQIQVLEGLDPVRKR PGMYIGSTGPRGLHHLVYEILDNAVDEAQAGFATQINVVLLSDGSVSITDNGRGIPTD LHPITKKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSETLEVTVWRD GMEYEQKYSRGKPVSTLTCHVLSTESKHRQGTCIRFWPDKEIFTTAIEFDYNTLAGRI RELAFLNPKLTITLKKEDNNPEKSLYNEYFFAGGLVEYVKWLNTDKKPLHDVLGFSRR IDGATIDVALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNNLGKKSKVI KDKDISLSGEHVREGLTCIISVKIPNPEFEGQTKTRLGNPEVRKVVDQSVQEFLAEFL ELHPDVLDSILSKSLNAFKAALAAKRARELVRQKSVLKSSSLPGKLADCSSTNPEESE IFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLG VKGRGF" mRNA complement(join(22313557..22313586,22314140..22314365, 22315112..22315179,22316828..22316942,22317088..22317216, 22317350..22317448,22317925..22318066,22318434..22318504, 22319946..22320056,22320253..22320329,22320420..22320570, 22321582..22321683,22322795..22322851,22323274..22323387, 22323467..22323547,22323651..22323792,22324178..22324407)) /locus_tag="TCM_024112" /product="DNA gyrase subunit B isoform 3" /inference="alignment:exonerate- protein:2:ricco:29733.m000744" /inference="similar to AA sequence:ricco:29733.m000744" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc743t7; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc743t7; inference alignment:Newbler:10:TSA:cgbaP2_g04360t00001" CDS complement(join(22314351..22314365,22315112..22315179, 22316828..22316942,22317088..22317216,22317350..22317448, 22317925..22318066,22318434..22318504,22319946..22320056, 22320253..22320329,22320420..22320570,22321582..22321683, 22322795..22322851,22323274..22323387,22323467..22323547, 22323651..22323792,22324178..22324308)) /locus_tag="TCM_024112" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29733.m000744" /codon_start=1 /product="DNA gyrase subunit B isoform 3" /protein_id="EOY08863.1" /db_xref="TAIR:AT5G04130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94BZ7" /translation="MALLLRYPYLHLRLMASSSRFFLHSPCFHSLASLPRSSLFFKPR KSFALRSICRLPVQNVVTPKAFMSSNITTEAFQGSKSSKAYNSEQIQVLEGLDPVRKR PGMYIGSTGPRGLHHLVYEILDNAVDEAQAGFATQINVVLLSDGSVSITDNGRGIPTD LHPITKKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSETLEVTVWRD GMEYEQKYSRGKPVSTLTCHVLSTESKHRQGTCIRFWPDKEIFTTAIEFDYNTLAGRI RELAFLNPKLTITLKKEDNNPEKSLYNEYFFAGGLVEYVKWLNTDKKPLHDVLGFSRR IDGATIDVALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNNLGKKSKVI KDKDISLSGEHVREGLTCIISVKIPNPEFEGQTKTRLGNPEVRKVVDQSVQEFLAEFL ELHPDVLDSILSKSLNAFKAALAAKRARELVRQKSVLKSSSLPGKLADCSSTNPEESE IFIVEGDSAGGSAKQGRDRRFQLTHP" mobile_element complement(22319728..22319804) /note="source:scaffold_9_CACTA_0929 10076 10155" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22330500..22330574 /note="source:CACAO_M_E52981_F9_scaffold_8 2220 2294" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22332333..22334534) /note="source:INTACT329_F199_scaffold_2-int 169 1900" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22334535..22334961) /note="source:INTACT745_F320_scaffold_4-int 9278 9705" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22335732..22335909) /note="source:INTACT745_F320_scaffold_4-int 8950 9127" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22335840..22337480 /note="source:INTACT329_F199_scaffold_2-int 976 3839" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22337481..22338662 /note="source:scaffold_9_CACTA_0927 14894 16035" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22338663..22340069 /note="source:INTACT329_F199_scaffold_2-int 3840 6298" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22340056..22340754) /note="source:INTACT597_F267_scaffold_2-int 10294 10994" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22340717..22340830) /note="source:scaffold_2_CACTA_0262 9694 9807" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22340731..22340911) /note="source:INTACT745_F320_scaffold_4-int 4496 4614" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22340848..22340931 /note="source:INTACT690_F13_scaffold_1-int 7041 7124" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22340902..22342508) /note="source:INTACT745_F320_scaffold_4-int 2908 4506" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22342615..22345175) /note="source:INTACT212F_F351_scaffold_3-int 2388 4911" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22345473..22348419 /note="source:INTACT329_F199_scaffold_2-int 157 1893" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22348333..22348457) /note="source:CACAO_M_E42395_F3_scaffold_5 4495 4627" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22348469..22348726) /note="source:INTACT563_F255_scaffold_10-int 1136 1380" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 22349047..22349233 /note="source:INTACT745_F320_scaffold_4-int 8946 9132" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22349343..22351231 /note="source:INTACT745_F320_scaffold_4-int 2908 4614" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22351208..22351906 /note="source:INTACT597_F267_scaffold_2-int 10294 10993" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22351894..22356041) /note="source:INTACT329_F199_scaffold_2-int 169 6274" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22356147..22356333 /note="source:INTACT745_F320_scaffold_4-int 8946 9132" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22356440..22357022 /note="source:INTACT745_F320_scaffold_4-int 9256 9705" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22357149..22358572 /note="source:CACAO_M_E43423_F9_scaffold_5 1 1424" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22364702..22365496) /note="source:INTACT597_F267_scaffold_2-int 376 1157" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22364719..22366476 /note="source:INTACT295_F13_scaffold_9-int 6464 8285" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22366622..22367761 /note="source:INTACT41F_F338_scaffold_1-int 1292 2439" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22368951..22369644) /note="source:CACAO_M_E23991_F4_scaffold_4 13821 14472" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(22369646..22375574) /note="source:CACAO_M_S_E17578_F152_scaffold_3 1 5919" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22376892..22379438) /note="source:CACAO_M_E23991_F4_scaffold_4 9991 12562" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(22379694..22381035) /locus_tag="TCM_024119" /note="dbxref CacaoGD:Thecc1EG024119" mRNA complement(22379694..22381035) /locus_tag="TCM_024119" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013143t1" /note="quality class is medium-utrpoor, express is weak, homology is paralog strong, intron is none, protein is utrpoor_complete" CDS complement(22380294..22380563) /locus_tag="TCM_024119" /note="paralog of Thecc1EG013143t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08864.1" /translation="MYEWLGHQMIRQLRLLDSPMSANIVENAMACGIRWSEALVGYYV VAGPRILFDLLLETKNLFGFSDSYFLHGENEIIRFPTAPPGFTVI" mobile_element 22380803..22381132 /note="source:CACAO_M_E11662_F12_scaffold_2 6315 6644" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22381077..22381204) /note="source:CACAO_M_E35674_F13_scaffold_5 7629 7778" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22381203..22381263 /note="source:INTACT215F_F14_scaffold_3-int 11496 11551" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22382301..22382703 /note="source:CACAO_M_E23991_F4_scaffold_4 9222 9624" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(22382811..22382930) /note="source:CACAO_M_E23991_F4_scaffold_4 9875 9995" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(22401019..22401085) /note="source:CACAO_M_E4631_F369_scaffold_2 7838 7906" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22404964..22407877) /note="source:INTACT453_F4_scaffold_9-int 15157 18089" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 22408198..22411630 /note="source:CACAO_M_E3654_F4_scaffold_1 3371 6789" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(22411721..22413057) /note="source:CACAO_M_S_E84261_F4_scaffold_6 1 1360" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 22413550..22414966 /note="source:CACAO_M_E24592_F195_scaffold_4 19420 20825" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22414941..22415318) /note="source:scaffold_1_CACTA_0011 7145 7523" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22415421..22415571) /note="source:INTACT595_F266_scaffold_7-int 950 1099" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22415438..22416564 /note="source:INTACT41F_F338_scaffold_1-int 1292 2439" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22418945..22419360) /note="source:scaffold_1_CACTA_0011 5575 5989" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22419777..22419916 /note="source:CACAO_M_E2975_F12_scaffold_1 9138 9261" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22419794..22419929) /note="source:INTACT84_F12_scaffold_5-int 12761 12902" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22420116..22420161) /note="source:INTACT612_F91_scaffold_5-int 9725 9768" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 22420532..22430740 /note="source:INTACT198_F13_scaffold_5-int 1 10209" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22431180..22434119 /note="source:CACAO_M_E43435_F44_scaffold_5 1 2940" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22434379..22434442 /note="source:CACAO_M_S_E89272_F5_scaffold_8 15490 15553" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22436513..22437914) /note="source:scaffold_5_CACTA_0591 12438 13827" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22437915..22438990) /note="source:CACAO_M_E56710_F44_scaffold_8 8067 9124" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22438984..22442111 /note="source:INTACT659F_F82_scaffold_5-int 1 3149" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22442023..22442193 /note="source:INTACT453_F4_scaffold_9-int 14039 14188" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(22442104..22442202) /note="source:CACAO_M_E42514_F40_scaffold_5 17365 17463" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 22442191..22442583 /note="source:INTACT659F_F82_scaffold_5-int 3461 3849" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22442584..22442864) /note="source:CACAO_M_E43348_F5_scaffold_5 15707 15987" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22443638..22443956 /note="source:CACAO_M_E48452_F5_scaffold_6 14934 15252" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22443957..22446340) /note="source:scaffold_5_CACTA_0591 4823 7190" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22444797..22446563 /note="source:CACAO_M_S_E119160_F14_scaffold_9 11577 13347" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22445034..22446569) /note="source:INTACT124_F12_scaffold_10-int 3458 5041" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22446537..22453580 /note="source:CACAO_M_E59541_F5_scaffold_9 360 7423" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22456222..22458935 /note="source:CACAO_M_E43348_F5_scaffold_5 25560 28267" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22466223..22469164 /note="source:CACAO_M_E43449_F44_scaffold_5 1 2942" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22472448..22472543) /note="source:CACAO_M_E53065_F12_scaffold_8 908 998" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22474773..22474876 /note="source:CACAO_M_E59093_F12_scaffold_9 981 1081" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22475495..22495199 /note="source:INTACT189_F49_scaffold_5-int 1 19705" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22498126..22498167) /note="source:CACAO_M_E5899_F5_scaffold_2 20746 20787" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(22499866..22507428) /locus_tag="TCM_024129" /note="dbxref CacaoGD:Thecc1EG024129" mRNA complement(join(22499866..22500123,22501843..22501883, 22502619..22502825,22504557..22504889,22504968..22505279, 22505414..22505559,22506050..22506316,22506940..22507428)) /locus_tag="TCM_024129" /product="Uncharacterized protein" /inference="similar to AA sequence:frave:gene20290" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.19 coverage; weak similarity to Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" CDS complement(join(22500105..22500123,22501843..22501883, 22502619..22502825,22504557..22504889,22504968..22505279, 22505414..22505559,22506050..22506316,22506940..22507042)) /locus_tag="TCM_024129" /note="dbxref frave:gene20290; weak similarity to Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08865.1" /db_xref="TAIR:AT4G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BM32" /translation="MIVVFDEKKKFKKEVICSHCNKKGHSKEKCYRLIGSGVMEGDWG VAKVISGLYFMQVNADEQALSKHSIDKIISSINVSSIHNCVAMHPSFDLWHFRLGHAS VERINVINKHCSDVHSSKHLLSCLAKFFTIAHCMNCCTKNLIPMITLEFFVVYVLCRL LVNIGKNLTKGQISFDHVFYQTPNVHESDFDFFYIVPIPCSIHAPMNASTSSTSSLDP LNMLENSNSLNFPSNSIDQSVSSRHVNSTVDFFESISFYCSVIPIDSIPHRKSDRTRK FLSSNKLSSKHKSFTASLSQLHEPITYHQAIHYDHRREAMAAELTALEDNDTWSVIPL LVDSHAIGCKWVFKNKMKADGSIERFKARLVAKAYNQIEGFDYQETFSPIAKQKCLFT NSSISMSQCNIWGGEAFLSDNKSIHSSSMNLGSSEANLEISRSREDTRCRALAMNIEV TLCNIEFSLRRAVKRKTHASDHLVD" mobile_element complement(22500136..22501109) /note="source:CACAO_M_E5899_F5_scaffold_2 24466 25426" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22503421..22503491) /note="source:INTACT230_F178_scaffold_3-int 14967 15042" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(22512938..22520820) /locus_tag="TCM_024130" /note="dbxref CacaoGD:Thecc1EG024130" mRNA complement(join(22512938..22513651,22513832..22514030, 22514138..22514252,22514591..22514833,22514989..22515089, 22515199..22515736,22516338..22516449,22519393..22519551, 22519693..22519790,22519878..22519969,22520149..22520820)) /locus_tag="TCM_024130" /product="Subtilisin-like serine endopeptidase family protein" /inference="alignment:exonerate- protein:2:ricco:29686.m000896" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034269t1" /inference="similar to AA sequence:ricco:29686.m000896" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1070t4" CDS complement(join(22513101..22513651,22513832..22514030, 22514138..22514252,22514591..22514833,22514989..22515089, 22515199..22515736,22516338..22516449,22519393..22519551, 22519693..22519790,22519878..22519969,22520149..22520229)) /locus_tag="TCM_024130" /note="dbxref ricco:29686.m000896; paralog of Thecc1EG034269t1" /codon_start=1 /product="Subtilisin-like serine endopeptidase family protein" /protein_id="EOY08866.1" /db_xref="TAIR:AT1G20160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GXK9" /translation="MASLLQLFSLFFPCLLIYTASSNQIPKHYIVYMGSSSEVNDEAA ESDHLQLLSTVIPRQDSGRISLIHHYNHALRGFSAMLTENEASELAGHDGVVSLFPDS VLQLHTTRSWDFLEGQSRPRFSHGSYQHKSSYDVIIGMIDGGIWPESPSFRDEGMGEI PTRWKGVCMEGPDFKKSNCNRKLIGARYYNVLHTSNGNKTTQMRVDKSPRDTVGHGTH TASTAAGAQVDNASYNGLAQGTARGGSPNARIAMYKACSEDGCPSSTTLKAIDDAIKD GVDIISISIGMSSLLQSDYLKDPIAIGAFHAEQLGVMVVCSGGNEGPDPFTIINAAPW IFTVAASNIDRDFQSTVLLGNGRTFQGSAINFSNLTRSETYPLAYGKDIAAKFSPISE ARSCYPGSLDPERVKGKVIICVDSFPIVSREIKKLVAEDAQAKGLILINENGKGAPFD SGAFPFTEVGSATGYKILKYINSNKNPTATILPTADVPRHRPAPVVAYFSSRGPSVLA ENILKPDIMAPGVAILAAVIPKVVQGKKPLEYAIKSGTSMACPHITGASAFIKSVHPK WTSSMIRSALMTTATVYDNMGKPLTNSSGSFATPHETGVGEISPLKALNPGLVFETTS EDYLKFLCYSGSSEKTIRSMAKTNFKCPRKSSDNLISSINYPSISISRLDKTRGFRTI TRSVTNVGLLNVTYTATAQAPLGLKVKVLPKTITFVENVRRVPFRVSFDGRGASTGYN FGSLTWSGGPYSVRMVFAVNVK" mobile_element 22515784..22515845 /note="source:CACAO_M_E5899_F5_scaffold_2 20723 20786" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22515983..22516252 /note="source:CACAO_M_E1841_F5_scaffold_1 22974 23244" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22516228..22516286 /note="source:CACAO_M_E5899_F5_scaffold_2 20726 20784" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22532551..22542243 /note="source:scaffold_5_CACTA_0600 1 9693" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22544970..22545691 /note="source:CACAO_M_S_E34046_F60_scaffold_4 3508 4230" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22545792..22547985) /note="source:CACAO_M_E57385_F197_scaffold_9 1805 3989" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 22553429..22559872 /note="source:CACAO_PIF_E119_scaffold_3 6777 13250" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(22559868..22562707) /note="source:CACAO_PIF_E62_scaffold_2 11754 14547" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 22562703..22563005 /note="source:CACAO_PIF_E119_scaffold_3 7814 8118" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(22563012..22563187) /note="source:CACAO_Mutator_E1018_scaffold_5 467 643" /mobile_element_type="transposon:TIR/Mutator" mobile_element 22563203..22563315 /note="source:CACAO_Mutator_E1018_scaffold_5 503 615" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(22563373..22563700) /note="source:CACAO_PIF_E62_scaffold_2 16126 16467" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(22563523..22563741) /note="source:CACAO_Mutator_E1320_scaffold_6 2002 2244" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(22563696..22563777) /note="source:CACAO_PIF_E62_scaffold_2 13861 13942" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(22563778..22564237) /note="source:CACAO_Mutator_E592_scaffold_3 9083 9507" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(22564233..22566495) /note="source:CACAO_M_S_E101805_F5_scaffold_9 2322 4534" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22566719..22571641) /note="source:CACAO_PIF_E62_scaffold_2 7093 12026" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 22575557..22583524 /note="source:CACAO_M_E43454_F25_scaffold_5 1 7968" /mobile_element_type="retrotransposon:LTR/Copia" gene 22584187..22585778 /locus_tag="TCM_024142" /note="dbxref CacaoGD:Thecc1EG024142" mRNA join(22584187..22584393,22584642..22584821, 22584982..22585228,22585493..22585778) /locus_tag="TCM_024142" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019129t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.44 coverage" CDS join(22584274..22584393,22584642..22584821, 22584982..22585228,22585493..22585596) /locus_tag="TCM_024142" /note="paralog of Thecc1EG019129t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08867.1" /translation="MLMSTPYYVMQTAMLPIKTCKIIEAHCKAFLWGGTVNVRKFKPN IIWALGNRVSTRFWTDQLLDDILQVDTTKSISVEIVDKGSVKEYVTSEGEWDLDRVCG SRQQDMETNLEVVWSERIRTFLFLYSHKKILTHQERVCKNFAIDPRCPTCQVNEESIL HCLRECLAAATVWFKLLPQNHQDCMIGWQPLATNFITLNVDGVSRSFLNRAAAGGV" mobile_element 22586843..22586943 /note="source:CACAO_Mutator_E592_scaffold_3 3632 3728" /mobile_element_type="transposon:TIR/Mutator" mobile_element 22587044..22587122 /note="source:INTACT651_F88_scaffold_2-int 418 491" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(22596950..22599038) /note="source:CACAO_M_E14113_F106_scaffold_3 10690 12780" /mobile_element_type="retrotransposon:LTR/Copia" gene 22603779..22609236 /locus_tag="TCM_024143" /note="dbxref CacaoGD:Thecc1EG024143" mRNA join(22603779..22604294,22604602..22604687, 22605582..22605647,22605755..22605925,22606121..22606291, 22606398..22606553,22606652..22606798,22607196..22607267, 22607359..22607889,22607976..22608163,22608694..22609236) /locus_tag="TCM_024143" /product="Microtubule-associated proteins 70-2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033637001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011057t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033637001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4959t2" CDS join(22604066..22604294,22604602..22604687, 22605582..22605647,22605755..22605925,22606121..22606291, 22606398..22606553,22606652..22606798,22607196..22607267, 22607359..22607889,22607976..22608163,22608694..22608709) /locus_tag="TCM_024143" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG011057t1" /codon_start=1 /product="Microtubule-associated proteins 70-2 isoform 1" /protein_id="EOY08868.1" /db_xref="Phytozome:GSVIVT01033637001" /db_xref="TAIR:AT1G24764.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L7S4" /translation="MGSNGNGNGSYHVMRNGDVDREPFKPAVLSSSASFKARKAKPNA ASPRADVDDIITLLHGSDPVRVELNRLENEVRDKDRELADANAEIKSLRNSERLKEKA VEELTDELKKVDEKLKVTEALLESKNLEIKKINDEKKAALAAQFAAEATLRRVHAAQK DDEMPPIEAIITPLEAELKLTRLEAAKLQEDNRALDRLTKSKEAALLEAERTVQIALA KASLVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGG AAANAVREYQRKVQEMNEEKKTLEREVARAKVSANRVATVVANEWKDGNDKVMPVKQW LEERRFLQGEMQQLRDKLAVAERAAKAEAHLKEKYQLRFKVLEERLKASTGNSRTASE GRGMSNGQSRRQSIGGAEIFLKSSSNIYLSRRSLNPQSGSLRSNSASALLRNAKMSSR SFDGGSRSLDRGKMIPDAAEKNRMLPSNGDQILGSDIVRCEESSNGITEKSKAEHEDY VSGMLYDMLQKEVITLRKACHEKDQSLKDKDDAIEMLAKKVETLNKAMDVEAKKMRRE VAAMEKEVAAMKVGKEHDQRTRRVSAPRGLVNGSQLLSTRNARS" mRNA join(22604073..22604294,22604602..22604687, 22605582..22605647,22605755..22605925,22606121..22606291, 22606398..22606553,22606652..22606798,22607196..22607267, 22607359..22607889,22608692..22609195) /locus_tag="TCM_024143" /product="Microtubule-associated proteins 70-2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033637001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011057t4" /inference="similar to AA sequence:Phytozome:GSVIVT01033637001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1102t3_C1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4959t2" CDS join(22604105..22604294,22604602..22604687, 22605582..22605647,22605755..22605925,22606121..22606291, 22606398..22606553,22606652..22606798,22607196..22607267, 22607359..22607889,22608692..22608709) /locus_tag="TCM_024143" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG011057t4" /codon_start=1 /product="Microtubule-associated proteins 70-2 isoform 2" /protein_id="EOY08869.1" /db_xref="Phytozome:GSVIVT01033637001" /db_xref="TAIR:AT1G68060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L7S4" /translation="MRNGDVDREPFKPAVLSSSASFKARKAKPNAASPRADVDDIITL LHGSDPVRVELNRLENEVRDKDRELADANAEIKSLRNSERLKEKAVEELTDELKKVDE KLKVTEALLESKNLEIKKINDEKKAALAAQFAAEATLRRVHAAQKDDEMPPIEAIITP LEAELKLTRLEAAKLQEDNRALDRLTKSKEAALLEAERTVQIALAKASLVDDLQNKNQ ELMKQIEICQEENKILDKMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVREYQRKV QEMNEEKKTLEREVARAKVSANRVATVVANEWKDGNDKVMPVKQWLEERRFLQGEMQQ LRDKLAVAERAAKAEAHLKEKYQLRFKVLEERLKASTGNSRTASEGRGMSNGQSRRQS IGGAEIFLKSSSNIYLSRRSLNPQSGSLRSNSASALLRNAKMSSRSFDGGSRSLDRGK MIPDAAEKNRMLPSNGDQILGSDIVRCEESSNGITEKSKAEHEDYVSGMLYDMLQKEV ITLRKACHEKDQSLKDKDDAIERNARS" gene 22610789..22618857 /locus_tag="TCM_024144" /note="dbxref CacaoGD:Thecc1EG024144" mRNA join(22610789..22611182,22612945..22613342, 22618446..22618740,22618832..22618857) /locus_tag="TCM_024144" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.22 coverage" CDS 22613020..22613340 /locus_tag="TCM_024144" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08870.1" /translation="MLKISRLHLQTSTSRELVPKYQDIHAMYQDLVFEIPNSIMQAFK YRDLLAEDQDIISRLQFPESKCSSTKTKLQYLETCFSLRMPRMNKYRDMQYRYWDLKY WDLY" mobile_element complement(22618621..22619765) /note="source:CACAO_M_E639_F17_scaffold_1 10638 11774" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22620517..22622330 /note="source:INTACT859F_F13_scaffold_5-int 1 1824" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22623303..22624514 /note="source:CACAO_M_S_E65791_F5_scaffold_5 1 1201" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 22626139..22629879 /locus_tag="TCM_024145" /note="dbxref CacaoGD:Thecc1EG024145" mRNA join(22626139..22626700,22628301..22628561, 22628670..22628830,22629560..22629879) /locus_tag="TCM_024145" /product="Aquaporin sip2.1, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025840001" /inference="similar to AA sequence:ricco:30045.m000487" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc982t4" CDS join(22626416..22626700,22628301..22628561, 22628670..22628830,22629560..22629689) /locus_tag="TCM_024145" /note="dbxref ricco:30045.m000487" /codon_start=1 /product="Aquaporin sip2.1, putative" /protein_id="EOY08871.1" /db_xref="TAIR:AT3G56950.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SCG0" /translation="MARARLIVYDFLMSFMWVWSGILVKMFVSKALGMGNQPKAEILK GAFSIINMFFFAFLGKITKGAAYNPLTVFSSAVSGDFSHFLFTVGARIPAQVIGSITG VRLIIETFPGIGLGPRLNVDIHRGALTEGFLTFAIVIISLGLARKIPGSFFMKTWITS VSKLALHILGSDLTGGCMNPASVMGWAYARGDHITKEHILVYWLAPIEATLLAVWTFR LVVKPITEEKEKVKAKSDHSSAFPSLGKLDYSREGASWVWQNGCLTPSPYPTARPISA VV" gene 22631138..22634507 /locus_tag="TCM_024147" /note="dbxref CacaoGD:Thecc1EG024147" mRNA join(22631138..22631323,22632698..22632896, 22633148..22633236,22634008..22634507) /locus_tag="TCM_024147" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008090t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.38 coverage" CDS join(22631177..22631323,22632698..22632896, 22633148..22633236,22634008..22634244) /locus_tag="TCM_024147" /note="paralog of Thecc1EG008090t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08872.1" /translation="MVSKCFSGETGKGVASEKEDILEYVATYMGKLMDVIENMEKDLR VLIDKNDEMDDDCEDDYVGKRDNYSKEDKGEDNDIPDCNQVDSSTNHATTIVLKDVEY DDPIYDNPSVGDNVACKNKACKFDMRATKLPKRDYWQVLTFHKDVYNHLMKLRLERWA HARSPVRLYKLMTSNIAECINSCLKQARKMPITVLIECIRAMFQCWFHDLHKKVLNLT MPLNP" mobile_element 22638426..22641657 /note="source:CACAO_M_E3884_F22_scaffold_1 11754 14579" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22639574..22644110) /note="source:INTACT1625F_F66_scaffold_10-int 3606 8194" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22644111..22647948) /note="source:INTACT39F_F22_scaffold_1-int 3568 7434" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22647947..22651044 /note="source:INTACT1820F_F94_scaffold_12-int 5549 8579" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22649220..22651708) /note="source:CACAO_M_E12221_F121_scaffold_3 181 2663" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22651709..22653318 /note="source:INTACT329_F199_scaffold_2-int 621 2219" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22653333..22656004) /note="source:CACAO_M_E84911_F7_scaffold_10 314 2986" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22656005..22664783 /note="source:CACAO_M_E43465_F86_scaffold_5 1 8779" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22664784..22665102 /note="source:CACAO_M_E52812_F7_scaffold_8 9594 9912" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22665214..22665316 /note="source:INTACT763_F7_scaffold_4-int 3490 3584" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22666100..22669732 /note="source:INTACT329_F199_scaffold_2-int 2958 6096" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22669386..22669969) /note="source:CACAO_M_S_E17777_F2_scaffold_3 7468 8037" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22670750..22672043 /note="source:INTACT329_F199_scaffold_2-int 621 1908" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(22673228..22674075) /locus_tag="TCM_024150" /note="dbxref CacaoGD:Thecc1EG024150" mRNA complement(join(22673228..22673557,22673766..22674075)) /locus_tag="TCM_024150" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(22673369..22673557,22673766..22673840)) /locus_tag="TCM_024150" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08873.1" /translation="MMKWYCDEMPISFPNRITALERDGRLDGQTKFGPKQRRKTMERK ETRVVRKGVKQRYTMDEEVNAHFAAPEASIAAEALATQSWDDD" mobile_element 22674236..22674509 /note="source:INTACT666_F293_scaffold_9-int 70 328" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22675673..22678508) /note="source:INTACT1391F_F387_scaffold_8-int 10376 13255" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22678500..22680193 /note="source:INTACT642F_F365_scaffold_5-int 11117 12812" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22680195..22683429 /note="source:INTACT58_F125_scaffold_5-int 11494 14805" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22683430..22685127) /note="source:INTACT666_F293_scaffold_9-int 16389 18111" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(22685187..22691063) /locus_tag="TCM_024152" /note="dbxref CacaoGD:Thecc1EG024152" mRNA complement(join(22685187..22685408,22688087..22688676, 22689082..22689180,22689425..22689752,22689842..22689906, 22690235..22691063)) /locus_tag="TCM_024152" /product="Dicarboxylate diiron protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30045.m000485" /inference="similar to AA sequence:ricco:30045.m000485" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g07173t00001" mobile_element complement(22686094..22686428) /note="source:INTACT666_F293_scaffold_9-int 62 429" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22688125..22688163 /note="source:CACAO_M_E49559_F88_scaffold_7 7633 7671" /mobile_element_type="retrotransposon:LTR/Copia" mRNA complement(join(22688184..22688676,22689082..22689180, 22689433..22689752,22689842..22689906,22690235..22690947)) /locus_tag="TCM_024152" /product="Dicarboxylate diiron protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:30045.m000485" /inference="similar to AA sequence:ricco:30045.m000485" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc7626t1; inference alignment:Newbler:10:TSA:cgbaP2_g07173t00001" CDS complement(join(22688413..22688676,22689082..22689180, 22689425..22689752,22689842..22689906,22690235..22690897)) /locus_tag="TCM_024152" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30045.m000485" /codon_start=1 /product="Dicarboxylate diiron protein isoform 1" /protein_id="EOY08874.1" /db_xref="TAIR:AT3G56940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M591" /translation="MAMAMGSEETLSETNREIKKHLYKNHTCQVQFRDRFHWMRFNQL STNYKSDSLSHSLHSLFTKFVQENHIKMAAEMALVKPISKFSSSSPKFSNPRYAKFSS VKMSATSQPTTKPSKKAAKTAIKETLLTPRFYTTDFDEMETLFNTEINKNLNQSEFEA LLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGR RLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNLALDLGFLTKARKYTFFKPKFIF YATYLSEKIGYWRYITIYRHLKANPEYQCYPIFKYFENWCQDENRHGDFFSALLKAQP QFLNDWKAKLWSRFFCLSVYVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIETNRTTAR IFPAVLDVENPEFKRRLDRMVEINQNLIAAGESQDIPLVKNLKRIPLIAALASELLAT YLMPPIESGSVDFAEFEPQVVY" mRNA complement(join(22688561..22688676,22689082..22689752, 22689842..22689906,22690235..22690947)) /locus_tag="TCM_024152" /product="Dicarboxylate diiron protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30045.m000485" /inference="similar to AA sequence:ricco:30045.m000485" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc7626t9; inference alignment:Newbler:10:TSA:cgbaP2_g07173t00001" mRNA complement(join(22688628..22689180,22689433..22689752, 22689842..22689906,22690235..22690947)) /locus_tag="TCM_024152" /product="Dicarboxylate diiron protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:30045.m000485" /inference="similar to AA sequence:ricco:30045.m000485" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc7626t8; alternateUTRof:Thecc1EG024152t3; inference alignment:Newbler:10:TSA:cgbaP2_g07173t00001" CDS complement(join(22689116..22689180,22689433..22689752, 22689842..22689906,22690235..22690897)) /locus_tag="TCM_024152" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30045.m000485" /codon_start=1 /product="Dicarboxylate diiron protein isoform 3" /protein_id="EOY08876.1" /db_xref="TAIR:AT3G56940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M591" /translation="MAMAMGSEETLSETNREIKKHLYKNHTCQVQFRDRFHWMRFNQL STNYKSDSLSHSLHSLFTKFVQENHIKMAAEMALVKPISKFSSSSPKFSNPRYAKFSS VKMSATSQPTTKPSKKAAKTAIKETLLTPRFYTTDFDEMETLFNTEINKNLNQSEFEA LLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGR RLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNLALDLGFLTKARKYTFFKPKFIF YATYLSEKIGYWRYITIYRHLKANPEYQCYPIFKYFENWCQDENRHGDFFSALLKAQP QFLNDWKAKLWSRFFCVCYNVPERLSAHCFLRGHWT" CDS complement(join(22689116..22689180,22689433..22689752, 22689842..22689906,22690235..22690897)) /locus_tag="TCM_024152" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30045.m000485" /codon_start=1 /product="Dicarboxylate diiron protein isoform 3" /protein_id="EOY08877.1" /db_xref="TAIR:AT3G56940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M591" /translation="MAMAMGSEETLSETNREIKKHLYKNHTCQVQFRDRFHWMRFNQL STNYKSDSLSHSLHSLFTKFVQENHIKMAAEMALVKPISKFSSSSPKFSNPRYAKFSS VKMSATSQPTTKPSKKAAKTAIKETLLTPRFYTTDFDEMETLFNTEINKNLNQSEFEA LLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGR RLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNLALDLGFLTKARKYTFFKPKFIF YATYLSEKIGYWRYITIYRHLKANPEYQCYPIFKYFENWCQDENRHGDFFSALLKAQP QFLNDWKAKLWSRFFCVCYNVPERLSAHCFLRGHWT" CDS complement(join(22689410..22689752,22689842..22689906, 22690235..22690897)) /locus_tag="TCM_024152" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30045.m000485" /codon_start=1 /product="Dicarboxylate diiron protein isoform 2" /protein_id="EOY08875.1" /db_xref="TAIR:AT3G56940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M591" /translation="MAMAMGSEETLSETNREIKKHLYKNHTCQVQFRDRFHWMRFNQL STNYKSDSLSHSLHSLFTKFVQENHIKMAAEMALVKPISKFSSSSPKFSNPRYAKFSS VKMSATSQPTTKPSKKAAKTAIKETLLTPRFYTTDFDEMETLFNTEINKNLNQSEFEA LLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGR RLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNLALDLGFLTKARKYTFFKPKFIF YATYLSEKIGYWRYITIYRHLKANPEYQCYPIFKYFENWCQDENRHGDFFSALLKAQP QFLNDWKAKLWSRFFCLSVIFH" mobile_element complement(22694735..22695882) /note="source:INTACT180_F13_scaffold_3-int 4638 5779" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22695876..22696870) /note="source:INTACT180_F13_scaffold_3-int 3166 4144" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(22703514..22713475) /locus_tag="TCM_024156" /note="dbxref CacaoGD:Thecc1EG024156" mRNA complement(join(22703514..22703555,22706836..22709625, 22713264..22713475)) /locus_tag="TCM_024156" /product="Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s18020.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003259t1" /inference="similar to AA sequence:Phytozome:Glyma19g30090.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc506t2; alternateUTRof:Thecc1EG024156t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc506t4" mRNA complement(join(22703514..22703555,22704080..22704253, 22704784..22704858,22706836..22709625,22713264..22713475)) /locus_tag="TCM_024156" /product="Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s18020.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003259t1" /inference="similar to AA sequence:Phytozome:Glyma19g30090.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc506t5; alternateUTRof:Thecc1EG024156t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc506t4" mRNA complement(join(22703531..22703555,22704784..22704858, 22706836..22707070,22707171..22709625,22713264..22713475)) /locus_tag="TCM_024156" /product="Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s18020.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003259t1" /inference="similar to AA sequence:Phytozome:Glyma19g30090.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc506t3; alternateUTRof:Thecc1EG024156t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc506t4" mRNA complement(join(22703531..22703555,22704784..22704858, 22706836..22706921,22707003..22709625,22713264..22713475)) /locus_tag="TCM_024156" /product="Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s18020.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003259t1" /inference="similar to AA sequence:Phytozome:Glyma19g30090.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc506t4; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc506t4" mRNA complement(join(22703531..22703555,22704784..22704858, 22706836..22709625,22713264..22713475)) /locus_tag="TCM_024156" /product="Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s18020.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003259t1" /inference="similar to AA sequence:Phytozome:Glyma19g30090.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc506t9; alternateUTRof:Thecc1EG024156t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc506t4" mRNA complement(join(22704784..22704858,22705097..22705176, 22706836..22707070,22707171..22709625,22713264..22713447)) /locus_tag="TCM_024156" /product="Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s18020.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003259t1" /inference="similar to AA sequence:Phytozome:Glyma19g30090.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc511t2_C2; alternateUTRof:Thecc1EG024156t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc506t4" mRNA complement(join(22707003..22707066,22707168..22709625, 22713264..22713449)) /locus_tag="TCM_024156" /product="Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s18020.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003259t1" /inference="similar to AA sequence:Phytozome:Glyma19g30090.1" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc425t2_C2; alternateUTRof:Thecc1EG024156t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc506t4" CDS complement(join(22707536..22709625,22713264..22713270)) /locus_tag="TCM_024156" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG003259t1" /codon_start=1 /product="Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase isoform 1" /protein_id="EOY08878.1" /db_xref="Phytozome:Glyma19g30090.1" /db_xref="TAIR:AT2G40980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H0U1" /translation="MEGGSPDQESVGSGTKRSTVSSGSKSRTRKEVFYRFIDCEIFTE NIEDWFQSISEKSAPKKPAFDVPFELIELQKFDYALEGVSFQQLIRMPNAVYASTSDA AEATAYLAVDDFLHATVKGLWEAFWSQDEPLPFSVACLYKENLKFYQAEKAIANGKLG SLCATGVLHKNPRHPHGKWDDLLELALLRPDIRSIALESEQQPPLRVLGEALFYALRM LLSRSLSRQKFPQGSNSVFVLLVDSQYGGVVKVEGDVNKMDFDVNNVYECAADWIKRH AKIAVSPVDRIWNKLGNANWGDIGALQVTFATFHCIMQFAGPPKHSIEDLAADHGSRL QTRRVERQLGDTRVNGGGLFRFQQHGVSPEIVEVQDESVKIKSEELLKLEVGSVLWLE DSNWQRGYQINQVESNGELPYYIASPVEEPGKSLFLYLGSHPSQLEPAWEDMNMWYQV QRQTKVLTIMKQKGLSSKYLPQLSASGRIIHPGQCQRPSSGGNCDHPWCGTPILVTSP VGETVADMVSEGQFGVDEAIRCCHDCLSALSTASSDGIRHGDIRPENVICVRSAERHP YFVLIGWGHAILEDRDRPAMNLHFSSTYALQEGKLCSASDAESLVYMLYFACGGALPD LDSVEGALQWRETSWSRRLIQQKLGDVSTVLKAFADYVDSLCGTPYPMDYDIWLRRLK RSIREDDHGKEIDTST" CDS complement(join(22707536..22709625,22713264..22713270)) /locus_tag="TCM_024156" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG003259t1" /codon_start=1 /product="Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase isoform 1" /protein_id="EOY08879.1" /db_xref="Phytozome:Glyma19g30090.1" /db_xref="TAIR:AT2G40980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H0U1" /translation="MEGGSPDQESVGSGTKRSTVSSGSKSRTRKEVFYRFIDCEIFTE NIEDWFQSISEKSAPKKPAFDVPFELIELQKFDYALEGVSFQQLIRMPNAVYASTSDA AEATAYLAVDDFLHATVKGLWEAFWSQDEPLPFSVACLYKENLKFYQAEKAIANGKLG SLCATGVLHKNPRHPHGKWDDLLELALLRPDIRSIALESEQQPPLRVLGEALFYALRM LLSRSLSRQKFPQGSNSVFVLLVDSQYGGVVKVEGDVNKMDFDVNNVYECAADWIKRH AKIAVSPVDRIWNKLGNANWGDIGALQVTFATFHCIMQFAGPPKHSIEDLAADHGSRL QTRRVERQLGDTRVNGGGLFRFQQHGVSPEIVEVQDESVKIKSEELLKLEVGSVLWLE DSNWQRGYQINQVESNGELPYYIASPVEEPGKSLFLYLGSHPSQLEPAWEDMNMWYQV QRQTKVLTIMKQKGLSSKYLPQLSASGRIIHPGQCQRPSSGGNCDHPWCGTPILVTSP VGETVADMVSEGQFGVDEAIRCCHDCLSALSTASSDGIRHGDIRPENVICVRSAERHP YFVLIGWGHAILEDRDRPAMNLHFSSTYALQEGKLCSASDAESLVYMLYFACGGALPD LDSVEGALQWRETSWSRRLIQQKLGDVSTVLKAFADYVDSLCGTPYPMDYDIWLRRLK RSIREDDHGKEIDTST" CDS complement(join(22707536..22709625,22713264..22713270)) /locus_tag="TCM_024156" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG003259t1" /codon_start=1 /product="Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase isoform 1" /protein_id="EOY08880.1" /db_xref="Phytozome:Glyma19g30090.1" /db_xref="TAIR:AT2G40980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H0U1" /translation="MEGGSPDQESVGSGTKRSTVSSGSKSRTRKEVFYRFIDCEIFTE NIEDWFQSISEKSAPKKPAFDVPFELIELQKFDYALEGVSFQQLIRMPNAVYASTSDA AEATAYLAVDDFLHATVKGLWEAFWSQDEPLPFSVACLYKENLKFYQAEKAIANGKLG SLCATGVLHKNPRHPHGKWDDLLELALLRPDIRSIALESEQQPPLRVLGEALFYALRM LLSRSLSRQKFPQGSNSVFVLLVDSQYGGVVKVEGDVNKMDFDVNNVYECAADWIKRH AKIAVSPVDRIWNKLGNANWGDIGALQVTFATFHCIMQFAGPPKHSIEDLAADHGSRL QTRRVERQLGDTRVNGGGLFRFQQHGVSPEIVEVQDESVKIKSEELLKLEVGSVLWLE DSNWQRGYQINQVESNGELPYYIASPVEEPGKSLFLYLGSHPSQLEPAWEDMNMWYQV QRQTKVLTIMKQKGLSSKYLPQLSASGRIIHPGQCQRPSSGGNCDHPWCGTPILVTSP VGETVADMVSEGQFGVDEAIRCCHDCLSALSTASSDGIRHGDIRPENVICVRSAERHP YFVLIGWGHAILEDRDRPAMNLHFSSTYALQEGKLCSASDAESLVYMLYFACGGALPD LDSVEGALQWRETSWSRRLIQQKLGDVSTVLKAFADYVDSLCGTPYPMDYDIWLRRLK RSIREDDHGKEIDTST" CDS complement(join(22707536..22709625,22713264..22713270)) /locus_tag="TCM_024156" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG003259t1" /codon_start=1 /product="Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase isoform 1" /protein_id="EOY08881.1" /db_xref="Phytozome:Glyma19g30090.1" /db_xref="TAIR:AT2G40980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H0U1" /translation="MEGGSPDQESVGSGTKRSTVSSGSKSRTRKEVFYRFIDCEIFTE NIEDWFQSISEKSAPKKPAFDVPFELIELQKFDYALEGVSFQQLIRMPNAVYASTSDA AEATAYLAVDDFLHATVKGLWEAFWSQDEPLPFSVACLYKENLKFYQAEKAIANGKLG SLCATGVLHKNPRHPHGKWDDLLELALLRPDIRSIALESEQQPPLRVLGEALFYALRM LLSRSLSRQKFPQGSNSVFVLLVDSQYGGVVKVEGDVNKMDFDVNNVYECAADWIKRH AKIAVSPVDRIWNKLGNANWGDIGALQVTFATFHCIMQFAGPPKHSIEDLAADHGSRL QTRRVERQLGDTRVNGGGLFRFQQHGVSPEIVEVQDESVKIKSEELLKLEVGSVLWLE DSNWQRGYQINQVESNGELPYYIASPVEEPGKSLFLYLGSHPSQLEPAWEDMNMWYQV QRQTKVLTIMKQKGLSSKYLPQLSASGRIIHPGQCQRPSSGGNCDHPWCGTPILVTSP VGETVADMVSEGQFGVDEAIRCCHDCLSALSTASSDGIRHGDIRPENVICVRSAERHP YFVLIGWGHAILEDRDRPAMNLHFSSTYALQEGKLCSASDAESLVYMLYFACGGALPD LDSVEGALQWRETSWSRRLIQQKLGDVSTVLKAFADYVDSLCGTPYPMDYDIWLRRLK RSIREDDHGKEIDTST" CDS complement(join(22707536..22709625,22713264..22713270)) /locus_tag="TCM_024156" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG003259t1" /codon_start=1 /product="Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase isoform 1" /protein_id="EOY08882.1" /db_xref="Phytozome:Glyma19g30090.1" /db_xref="TAIR:AT2G40980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H0U1" /translation="MEGGSPDQESVGSGTKRSTVSSGSKSRTRKEVFYRFIDCEIFTE NIEDWFQSISEKSAPKKPAFDVPFELIELQKFDYALEGVSFQQLIRMPNAVYASTSDA AEATAYLAVDDFLHATVKGLWEAFWSQDEPLPFSVACLYKENLKFYQAEKAIANGKLG SLCATGVLHKNPRHPHGKWDDLLELALLRPDIRSIALESEQQPPLRVLGEALFYALRM LLSRSLSRQKFPQGSNSVFVLLVDSQYGGVVKVEGDVNKMDFDVNNVYECAADWIKRH AKIAVSPVDRIWNKLGNANWGDIGALQVTFATFHCIMQFAGPPKHSIEDLAADHGSRL QTRRVERQLGDTRVNGGGLFRFQQHGVSPEIVEVQDESVKIKSEELLKLEVGSVLWLE DSNWQRGYQINQVESNGELPYYIASPVEEPGKSLFLYLGSHPSQLEPAWEDMNMWYQV QRQTKVLTIMKQKGLSSKYLPQLSASGRIIHPGQCQRPSSGGNCDHPWCGTPILVTSP VGETVADMVSEGQFGVDEAIRCCHDCLSALSTASSDGIRHGDIRPENVICVRSAERHP YFVLIGWGHAILEDRDRPAMNLHFSSTYALQEGKLCSASDAESLVYMLYFACGGALPD LDSVEGALQWRETSWSRRLIQQKLGDVSTVLKAFADYVDSLCGTPYPMDYDIWLRRLK RSIREDDHGKEIDTST" CDS complement(join(22707536..22709625,22713264..22713270)) /locus_tag="TCM_024156" /note="encoded by transcript variant 6; alternatively spliced; paralog of Thecc1EG003259t1" /codon_start=1 /product="Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase isoform 1" /protein_id="EOY08883.1" /db_xref="Phytozome:Glyma19g30090.1" /db_xref="TAIR:AT2G40980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H0U1" /translation="MEGGSPDQESVGSGTKRSTVSSGSKSRTRKEVFYRFIDCEIFTE NIEDWFQSISEKSAPKKPAFDVPFELIELQKFDYALEGVSFQQLIRMPNAVYASTSDA AEATAYLAVDDFLHATVKGLWEAFWSQDEPLPFSVACLYKENLKFYQAEKAIANGKLG SLCATGVLHKNPRHPHGKWDDLLELALLRPDIRSIALESEQQPPLRVLGEALFYALRM LLSRSLSRQKFPQGSNSVFVLLVDSQYGGVVKVEGDVNKMDFDVNNVYECAADWIKRH AKIAVSPVDRIWNKLGNANWGDIGALQVTFATFHCIMQFAGPPKHSIEDLAADHGSRL QTRRVERQLGDTRVNGGGLFRFQQHGVSPEIVEVQDESVKIKSEELLKLEVGSVLWLE DSNWQRGYQINQVESNGELPYYIASPVEEPGKSLFLYLGSHPSQLEPAWEDMNMWYQV QRQTKVLTIMKQKGLSSKYLPQLSASGRIIHPGQCQRPSSGGNCDHPWCGTPILVTSP VGETVADMVSEGQFGVDEAIRCCHDCLSALSTASSDGIRHGDIRPENVICVRSAERHP YFVLIGWGHAILEDRDRPAMNLHFSSTYALQEGKLCSASDAESLVYMLYFACGGALPD LDSVEGALQWRETSWSRRLIQQKLGDVSTVLKAFADYVDSLCGTPYPMDYDIWLRRLK RSIREDDHGKEIDTST" CDS complement(join(22707536..22709625,22713264..22713270)) /locus_tag="TCM_024156" /note="encoded by transcript variant 7; alternatively spliced; paralog of Thecc1EG003259t1" /codon_start=1 /product="Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase isoform 1" /protein_id="EOY08884.1" /db_xref="Phytozome:Glyma19g30090.1" /db_xref="TAIR:AT2G40980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H0U1" /translation="MEGGSPDQESVGSGTKRSTVSSGSKSRTRKEVFYRFIDCEIFTE NIEDWFQSISEKSAPKKPAFDVPFELIELQKFDYALEGVSFQQLIRMPNAVYASTSDA AEATAYLAVDDFLHATVKGLWEAFWSQDEPLPFSVACLYKENLKFYQAEKAIANGKLG SLCATGVLHKNPRHPHGKWDDLLELALLRPDIRSIALESEQQPPLRVLGEALFYALRM LLSRSLSRQKFPQGSNSVFVLLVDSQYGGVVKVEGDVNKMDFDVNNVYECAADWIKRH AKIAVSPVDRIWNKLGNANWGDIGALQVTFATFHCIMQFAGPPKHSIEDLAADHGSRL QTRRVERQLGDTRVNGGGLFRFQQHGVSPEIVEVQDESVKIKSEELLKLEVGSVLWLE DSNWQRGYQINQVESNGELPYYIASPVEEPGKSLFLYLGSHPSQLEPAWEDMNMWYQV QRQTKVLTIMKQKGLSSKYLPQLSASGRIIHPGQCQRPSSGGNCDHPWCGTPILVTSP VGETVADMVSEGQFGVDEAIRCCHDCLSALSTASSDGIRHGDIRPENVICVRSAERHP YFVLIGWGHAILEDRDRPAMNLHFSSTYALQEGKLCSASDAESLVYMLYFACGGALPD LDSVEGALQWRETSWSRRLIQQKLGDVSTVLKAFADYVDSLCGTPYPMDYDIWLRRLK RSIREDDHGKEIDTST" mobile_element complement(22715339..22715386) /note="source:INTACT108_F12_scaffold_5-int 4842 4889" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22718408..22722184) /note="source:INTACT1_F64_scaffold_3-int 2380 6160" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 22722164..22722726 /note="source:scaffold_2_CACTA_0276 6381 6964" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22722958..22723968 /note="source:scaffold_2_CACTA_0276 7177 8181" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22723970..22724785) /note="source:INTACT1_F64_scaffold_3-int 1594 2385" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(22725284..22725541) /note="source:INTACT1_F64_scaffold_3-int 413 656" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(22725643..22726030) /note="source:INTACT1_F64_scaffold_3-int 14 405" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(22726768..22727445) /locus_tag="TCM_024158" /note="dbxref CacaoGD:Thecc1EG024158" mRNA complement(22726768..22727445) /locus_tag="TCM_024158" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030880t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(22726828..22727292) /locus_tag="TCM_024158" /note="paralog of Thecc1EG030880t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08885.1" /translation="MATNWSTPPPRTLKLNTDGVAKGKPRLAGNEGVIRDHHGFIRET FSENIGIQDSNFVKFYAIREGISLFFSSPWVTTHSVVVENDSANAINWVQHHCKVLWR MKNTSNSIETFLRRSTRFTFKQIMREANNIADGLAKAGVLRDSNFKAYFQNQ" mobile_element 22733728..22743572 /note="source:CACAO_M_S_E65805_F7_scaffold_5 1 9845" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22743685..22743742) /note="source:CACAO_Again_on_S_E25_scaffold_1 133 190" /mobile_element_type="transposon:TIR/hAT" gene 22744143..22747321 /locus_tag="TCM_024160" /note="dbxref CacaoGD:Thecc1EG024160" mRNA join(22744143..22744266,22744420..22744731, 22746773..22747321) /locus_tag="TCM_024160" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g00620.1" /inference="similar to AA sequence:Phytozome:GSVIVT01025830001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4938t1" CDS join(22744155..22744266,22744420..22744731, 22746773..22747125) /locus_tag="TCM_024160" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08886.1" /db_xref="Phytozome:GSVIVT01025830001" /translation="MKRQSSSSSRRQNSIGCMCAISNLLFKHYNRSKFLISGKKQAKE APESATKAPEQTLKAANLPRSPTLAAELRRSNSVETPPNTLVARLMGVDKFPRTPEST ANKRRKLLCALEKCDEDLKALQRIIELVNTSVSVEHNSERRTLQHHQKQQLKKKPGQE DTAGACCFLDRFTKESIDDARSHQDDAGSPLWRSKAMVQSVDEVCKDIAWGERREIGR IGFALQDQICKDLIDEIVREMGHRFTYSLPFEACKRGLAF" gene complement(22748781..22752388) /locus_tag="TCM_024161" /note="dbxref CacaoGD:Thecc1EG024161" mRNA complement(join(22748781..22749281,22749723..22749826, 22750013..22750125,22750376..22750453,22750537..22750681, 22750978..22751092,22752331..22752388)) /locus_tag="TCM_024161" /product="Ubiquitin-conjugating enzyme E2 22" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s18020.1" /inference="similar to AA sequence:ricco:30045.m000490" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g04611t00001" CDS complement(join(22748921..22749281,22749723..22749826, 22750013..22750125,22750376..22750453,22750537..22750681, 22750978..22750980)) /locus_tag="TCM_024161" /note="dbxref ricco:30045.m000490" /codon_start=1 /product="Ubiquitin-conjugating enzyme E2 22" /protein_id="EOY08887.1" /db_xref="TAIR:AT5G05080.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FF66" /translation="MATNENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSIIYA DIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDW NPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYDEYARHARLYTGIHAKPKPK FKSGAICESTTALNVDQSNTSVLNVDQKNAASGAAALSLPYPLAQSITATKGGNNQDQ QSIFPTTETGVSGTALVGTAGPALKKEGLTKVQADKKKMDARKKSLKRL" gene 22752542..22760464 /locus_tag="TCM_024162" /note="dbxref CacaoGD:Thecc1EG024162" mRNA join(22752542..22752826,22754385..22754954, 22756447..22756715,22760083..22760464) /locus_tag="TCM_024162" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400003329.3" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(22752776..22752826,22754385..22754954, 22756447..22756584) /locus_tag="TCM_024162" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08888.1" /translation="MQPRKGILVNQFFWSGAWFENYYEIQTINTIKTSNKWQTNKKEI ESQHPPLTEVQYTHKNTGIRATPLRMRAPELGENVSSKYIKMIVEQNNYTNLNLHTIS QQLDKVEILVENQPQRTQNLSTGENRIETPKSSQPVFTPFEVPKKYHHEQQNQFLKEI QDRIDALESQNSRIIILETPTQQSRTIHTIETQSYSEELDDQQINKMIKKTERYKTAF TVPFGQYEWNVMPFGLKIASSEFQRILLKFYIYS" mobile_element 22756594..22759562 /note="source:CACAO_M_S_E65806_F326_scaffold_5 1 2969" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22759473..22759580) /note="source:CACAO_M_E44265_F33_scaffold_5 6509 6616" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22762353..22765069 /note="source:INTACT176_F12_scaffold_8-int 2701 5436" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22768010..22769752 /note="source:CACAO_M_E12782_F33_scaffold_3 1 1757" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22769853..22775925) /note="source:INTACT670_F33_scaffold_3-int 3099 9187" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22775900..22776071 /note="source:CACAO_M_S_E122077_F328_scaffold_10 2005 2175" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22776892..22779025 /note="source:CACAO_M_E1036_F33_scaffold_1 690 2820" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22782954..22782965) /note="source:CACAO_M_E69460_F12_scaffold_9 10824 10837" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22782966..22793973 /note="source:INTACT74_F134_scaffold_5-int 1 11008" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 22793833..22796703 /locus_tag="TCM_024167" /note="dbxref CacaoGD:Thecc1EG024167" mRNA join(22793833..22794230,22794954..22795012, 22795099..22795216,22795287..22795357,22795880..22796093, 22796391..22796703) /locus_tag="TCM_024167" /product="Integrase-like protein" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400021025" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(22793883..22794230,22794954..22795012, 22795099..22795216,22795287..22795357,22795880..22796093, 22796391..22796636) /locus_tag="TCM_024167" /codon_start=1 /product="Integrase-like protein" /protein_id="EOY08889.1" /db_xref="Phytozome:PGSC0003DMP400021025" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0ZCD3" /translation="MGSRLAFREMSVYQGTAVVVTSSRGVPDRDSIFWELPYWHSNLI RHNLDVMHIEQTVFENLFNTLLDIKGKSKDNLKAILNLKTYCKQLDLDLVEHNGKFFQ PKSAFTLTKEQINDYKAIEINILLNCEELEPYIEKYDEETRKVIPNISNGELEKSRET NFESWLRNFVNIPRIVENNKDQVDSHVENISYCPSRLVSESGLEEVEPILELEEENQR GYDDEFEKEEREKEEDKYLFEESKEQNVVVEGLEFNYSSSDDSTNDESEDIQGDIPPL VPPSALPTTIEPPSTQPTTAMPPSIQPIIVEPPSTQPITIMPHSIQLLIVEPPSTQPI IIMPHSIQLLTIKPLLT" mobile_element 22796642..22797164 /note="source:scaffold_8_CACTA_0859 16514 17027" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22797163..22797592) /note="source:CACAO_on_E279_scaffold_9 8033 8473" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(22797647..22797860) /note="source:CACAO_on_E279_scaffold_9 5 219" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 22797869..22801013 /locus_tag="TCM_024168" /note="dbxref CacaoGD:Thecc1EG024168" mRNA join(22797869..22798447,22798521..22798636, 22799574..22799650,22800455..22800556,22800643..22801013) /locus_tag="TCM_024168" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.34 coverage" CDS join(22798441..22798447,22798521..22798636, 22799574..22799650,22800455..22800556,22800643..22800922) /locus_tag="TCM_024168" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08890.1" /translation="MYALSNSRPQCSSTCCLVQNYNSQASSNMIFASILSELDEVAFY NGPWATWRKVPVANKTYIRIPFRYASTLLQKFGASSTQLEFDVKTWHEIVKGVGHGLC SISPTWNSRYASCETSFRTIRWSSRYASSISFETYGHSSDMSIIFNINSTSDGNDGEN PRDDDDDNEGVIPMDDSVDVEDAIDEASGEDDI" mobile_element 22798595..22798859 /note="source:scaffold_8_CACTA_0859 17671 17936" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22804260..22807235 /note="source:CACAO_M_E43479_F273_scaffold_5 1 2976" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(22806945..22810051) /locus_tag="TCM_024169" /note="dbxref CacaoGD:Thecc1EG024169" mRNA complement(join(22806945..22807235,22807384..22807629, 22808911..22809142,22809242..22809567,22809769..22810030)) /locus_tag="TCM_024169" /product="Folic acid and derivative biosynthetic process isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g00660.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034461t1" /inference="similar to AA sequence:Phytozome:GSVIVT01025834001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5396t1; inference alignment:Newbler:10:TSA:cgbaP2_g03789t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc26t15" mRNA complement(join(22807080..22807235,22807384..22807629, 22808911..22809142,22809242..22809283,22809376..22809567, 22809769..22810051)) /locus_tag="TCM_024169" /product="Folic acid and derivative biosynthetic process isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g00660.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034461t1" /inference="similar to AA sequence:Phytozome:GSVIVT01025834001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g03789t00001" mRNA complement(join(22807355..22807629,22808911..22809283, 22809376..22809567,22809769..22810030)) /locus_tag="TCM_024169" /product="Folic acid and derivative biosynthetic process isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g00660.2" /inference="similar to AA sequence:Phytozome:POPTR_0006s02780.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5396t4; inference alignment:Newbler:10:TSA:cgbaP2_g03789t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc26t15" CDS complement(join(22807394..22807629,22808911..22809142, 22809242..22809283,22809376..22809567,22809769..22809891)) /locus_tag="TCM_024169" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG034461t1" /codon_start=1 /product="Folic acid and derivative biosynthetic process isoform 1" /protein_id="EOY08891.1" /db_xref="Phytozome:GSVIVT01025834001" /db_xref="TAIR:AT4G24380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HDR4" /translation="MEEAQKQKMKILCLHGFRTSGSFLHKQISKWDPSVFCHFDMDFP DGLFPAGGKSDIEGIFPPPYFEWFQFNKDFTEYTNLEECVSHLCEYITTKGPFHGLLG FSQGATLCALLLGYQAQGKVLKEHPPFKFFVSISGSKFREPSICEVAYKDTIKVKSVH FIGAKDWLKLPSEELATAFDNPLIIRHPQGHTVPRLDEASTEQLSNWTAKILLQSNAS ISNNEHELKNGETNKDDEEERPKELNTNTINNQGDASKIAGNHKELKVGEAIQAQH" CDS complement(join(22807394..22807629,22808911..22809148)) /locus_tag="TCM_024169" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Folic acid and derivative biosynthetic process isoform 3" /protein_id="EOY08893.1" /db_xref="Phytozome:POPTR_0006s02780.1" /translation="MQGKVLKEHPPFKFFVSISGSKFREPSICEVAYKDTIKVKSVHF IGAKDWLKLPSEELATAFDNPLIIRHPQGHTVPRLDEASTEQLSNWTAKILLQSNASI SNNEHELKNGETNKDDEEERPKELNTNTINNQGDASKIAGNHKELKVGEAIQAQH" CDS complement(join(22809256..22809567,22809769..22809891)) /locus_tag="TCM_024169" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG034461t1" /codon_start=1 /product="Folic acid and derivative biosynthetic process isoform 2" /protein_id="EOY08892.1" /db_xref="Phytozome:GSVIVT01025834001" /db_xref="TAIR:AT4G24380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HDR4" /translation="MEEAQKQKMKILCLHGFRTSGSFLHKQISKWDPSVFCHFDMDFP DGLFPAGGKSDIEGIFPPPYFEWFQFNKDFTEYTNLEECVSHLCEYITTKGPFHGLLG FSQVRFILMHHHLFPQQVSSRLFSLLIAPCSCCRVQLFVLFC" mobile_element 22810063..22810125 /note="source:CACAO_M_S_E83372_F14_scaffold_6 4405 4466" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(22810296..22822577) /locus_tag="TCM_024170" /note="dbxref CacaoGD:Thecc1EG024170" mRNA complement(join(22810296..22810749,22811177..22811244, 22811505..22811592,22811810..22811947,22816035..22816086, 22817725..22817824,22818867..22818942,22819020..22819107, 22820423..22820481,22820625..22820804,22820913..22821009, 22821181..22821295,22821957..22822001,22822081..22822176, 22822252..22822307,22822418..22822498)) /locus_tag="TCM_024170" /product="Transducin/WD40 repeat-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT3G56900.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s03020.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05129t00001; inference alignment:Newbler:10:TSA:cgbaB_g05925t00001; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc774t4" mRNA complement(join(22810352..22810749,22811177..22811244, 22811505..22811592,22811810..22811947,22816035..22816086, 22817725..22817824,22818867..22818942,22819020..22819107, 22820423..22820481,22820625..22820804,22820913..22821012, 22821181..22821295,22821957..22822001,22822081..22822176, 22822252..22822307,22822418..22822513)) /locus_tag="TCM_024170" /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT3G56900.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s03020.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05925t00001; inference alignment:Newbler:10:TSA:cgbaB_g05925t00001" CDS complement(join(22811194..22811244,22811505..22811592, 22811810..22811947,22816035..22816086,22817725..22817824, 22818867..22818942,22819020..22819107,22820423..22820481, 22820625..22820804,22820913..22821009,22821181..22821295, 22821957..22822001,22822081..22822176,22822252..22822307, 22822418..22822475)) /locus_tag="TCM_024170" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 2" /protein_id="EOY08895.1" /db_xref="Phytozome:POPTR_0016s03020.2" /db_xref="TAIR:AT3G56900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GWR1" /translation="MPSFPQPGSVTICEINRDLVAAEALSDDGAKDTYGKLLGMVFSP VPFQSVEDPTQPQPTTNAANSQPKGLGMIASSLKHIFQPNDIDLLPEVALQGVSWHQH KHILAFISASNQVTVRDYEDSGKEPCILTSDSQRDVKVLEWRPNGGKLLSVACKGGIC IWAASYPGNAASVRSGSASFLGALSRGSGTRWTLVDFFRSPHDEQISALSWSPDGRYL ASASYESSSFTIWDVAQGIGTPIRRGLGGTSVLKWSPTGDYFFAGKFDGTFYLWETNT WTSEPWSSSSGFVTGATWDPDGRMVLLAFSRSSTLGSIHFASKPPSLDAHLLPVDLPE IISLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIALYDTRRNPLISASLIGFIRG PGSNPKPIAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRS" CDS complement(join(22811194..22811244,22811505..22811592, 22811810..22811947,22816035..22816086,22817725..22817824, 22818867..22818942,22819020..22819107,22820423..22820481, 22820625..22820804,22820913..22821012,22821181..22821295, 22821957..22822001,22822081..22822176,22822252..22822307, 22822418..22822475)) /locus_tag="TCM_024170" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /protein_id="EOY08894.1" /db_xref="Phytozome:POPTR_0016s03020.2" /db_xref="TAIR:AT3G56900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GWR1" /translation="MPSFPQPGSVTICEINRDLVAAEALSDDGAKDTYGKLLGMVFSP VPFQSVEDPTQPQPTTNAANSQPKGLGMIASSLKHIFQPNDIDLLPEVALQGVSWHQH KHILAFISASNQVTVRDYEDSAGKEPCILTSDSQRDVKVLEWRPNGGKLLSVACKGGI CIWAASYPGNAASVRSGSASFLGALSRGSGTRWTLVDFFRSPHDEQISALSWSPDGRY LASASYESSSFTIWDVAQGIGTPIRRGLGGTSVLKWSPTGDYFFAGKFDGTFYLWETN TWTSEPWSSSSGFVTGATWDPDGRMVLLAFSRSSTLGSIHFASKPPSLDAHLLPVDLP EIISLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIALYDTRRNPLISASLIGFIR GPGSNPKPIAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRS" mRNA complement(join(22817367..22817824,22818867..22818942, 22819020..22819107,22820423..22820481,22820625..22820804, 22820913..22821012,22821181..22821295,22821957..22822001, 22822081..22822176,22822252..22822307,22822418..22822577)) /locus_tag="TCM_024170" /product="Transducin/WD40 repeat-like superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:TAIR:AT3G56900.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s03020.2" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc312t8; inference alignment:Newbler:10:TSA:cgbaB_g05925t00001" CDS complement(join(22817717..22817824,22818867..22818942, 22819020..22819107,22820423..22820481,22820625..22820804, 22820913..22821012,22821181..22821295,22821957..22822001, 22822081..22822176,22822252..22822307,22822418..22822475)) /locus_tag="TCM_024170" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 3" /protein_id="EOY08896.1" /db_xref="Phytozome:POPTR_0016s03020.2" /db_xref="TAIR:AT3G56900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GWR1" /translation="MPSFPQPGSVTICEINRDLVAAEALSDDGAKDTYGKLLGMVFSP VPFQSVEDPTQPQPTTNAANSQPKGLGMIASSLKHIFQPNDIDLLPEVALQGVSWHQH KHILAFISASNQVTVRDYEDSAGKEPCILTSDSQRDVKVLEWRPNGGKLLSVACKGGI CIWAASYPGNAASVRSGSASFLGALSRGSGTRWTLVDFFRSPHDEQISALSWSPDGRY LASASYESSSFTIWDVAQGIGTPIRRGLGGTSVLKWSPTGDYFFAGKFDGTFYLWETN TWTSEPWSSSSGFVTGATWDPDGRMVLLAFSRSSTLGSIHFASKPPSLGM" misc_feature complement(join(22819020..22819107,22819232..22820064)) /locus_tag="TCM_024170" /note="Gene fragment of Thecc1EG024170t1; dbxref gnl|CacaoGD|Thecc1EG024170t1; quality class is mediumpartial-partof is thecc1eg024170t1, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2587t2; dbxref CacaoGD:Thecc1EG024171t1" mobile_element 22824071..22825789 /note="source:CACAO_M_S_E83372_F14_scaffold_6 3033 4755" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22828434..22833884 /note="source:INTACT859F_F13_scaffold_5-int 1 5451" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22833985..22838408 /note="source:INTACT859F_F13_scaffold_5-int 5452 9875" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22838291..22838429) /note="source:INTACT199_F5_scaffold_6-int 8450 8586" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22839039..22839247) /note="source:scaffold_8_CACTA_0858 14532 14727" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22839503..22839802 /note="source:INTACT19F_F94_scaffold_1-int 3 304" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22840073..22840264 /note="source:INTACT19F_F94_scaffold_1-int 415 612" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22840179..22840414) /note="source:scaffold_1_CACTA_0011 3520 3754" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22840455..22840509) /note="source:scaffold_1_CACTA_0011 3497 3550" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22844775..22847382 /note="source:CACAO_M_E43482_F345_scaffold_5 1 2608" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 22847393..22884751 /locus_tag="TCM_024174" /note="dbxref CacaoGD:Thecc1EG024174" mRNA join(22847393..22847410,22868714..22869157, 22869248..22869619,22869988..22870062,22870723..22870758, 22870861..22870972,22871296..22871366,22871503..22871633, 22871729..22871794,22873705..22873805,22873929..22873988, 22877424..22877457,22879982..22880080,22880151..22880210, 22882709..22882959,22883879..22884025,22884137..22884751) /locus_tag="TCM_024174" /product="Beta-hexosaminidase 3 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29929.m004503" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042957t1" /inference="similar to AA sequence:ricco:29929.m004503" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00033t00031" mobile_element 22851958..22854649 /note="source:CACAO_M_E43483_F73_scaffold_5 1 2692" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22855216..22855390 /note="source:CACAO_M_S_E5285_F300_scaffold_1 17406 17579" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(22856182..22864903) /note="source:CACAO_M_E84368_F4_scaffold_10 4503 13221" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 22865963..22865973 /note="source:CACAO_M_S_E85713_F12_scaffold_7 9046 9113" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22865974..22866028) /note="source:CACAO_M_E23144_F272_scaffold_4 1053 1109" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(22867794..22868254) /note="source:CACAO_on_E565_scaffold_5 13388 13846" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(22868259..22868497) /note="source:CACAO_on_E565_scaffold_5 1 238" /mobile_element_type="transposon:TIR/PIF-Harbinger" mRNA join(22869078..22869157,22869248..22869619, 22869988..22870062,22870723..22870758,22870861..22870972, 22871159..22871209,22871296..22871366,22871503..22871633, 22871729..22871794,22873705..22873805,22873929..22873988, 22877424..22877457,22879982..22880080,22880151..22880210, 22882709..22882959,22883879..22884019,22884137..22884279) /locus_tag="TCM_024174" /product="Beta-hexosaminidase 3 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29929.m004503" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042957t1" /inference="similar to AA sequence:ricco:29929.m004503" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00033t00031; inference alignment:Newbler:10:TSA:cgbaL_g00033t00031; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc475t14" mRNA join(22869078..22869157,22869248..22869619, 22869988..22870062,22870723..22870758,22870861..22870972, 22871296..22871366,22871503..22871633,22871729..22871794, 22873705..22873805,22873929..22873988,22877424..22877457, 22879982..22880080,22880151..22880210,22882709..22882959, 22883879..22884019,22884137..22884279) /locus_tag="TCM_024174" /product="Beta-hexosaminidase 3 isoform 4" /inference="alignment:exonerate- protein:2:ricco:29929.m004503" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042957t1" /inference="similar to AA sequence:ricco:29929.m004503" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00033t00012; inference alignment:Newbler:10:TSA:cgbaL_g00033t00031; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc475t14" mRNA join(22869078..22869157,22869248..22869619, 22869988..22870062,22870723..22870758,22870899..22870972, 22871159..22871209,22871296..22871366,22871503..22871633, 22871729..22871794,22873705..22873805,22873929..22873988, 22877424..22877457,22879982..22880080,22880151..22880210, 22882709..22882959,22883879..22884019,22884137..22884279) /locus_tag="TCM_024174" /product="Beta-hexosaminidase 3 isoform 3" /inference="alignment:exonerate- protein:2:ricco:29929.m004503" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042957t1" /inference="similar to AA sequence:ricco:29929.m004503" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00033t00007; inference alignment:Newbler:10:TSA:cgbaL_g00033t00031; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc475t14" mRNA join(22869078..22869157,22869248..22869619, 22869988..22870062,22870723..22870758,22870899..22870972, 22871296..22871366,22871503..22871633,22871729..22871794, 22873705..22873805,22873929..22873988,22877424..22877457, 22879982..22880080,22880151..22880210,22882709..22882959, 22883879..22884019,22884137..22884279) /locus_tag="TCM_024174" /product="Beta-hexosaminidase 3 isoform 5" /inference="alignment:exonerate- protein:2:ricco:29929.m004503" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042957t1" /inference="similar to AA sequence:ricco:29929.m004503" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00033t00001; inference alignment:Newbler:10:TSA:cgbaL_g00033t00031; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc475t14" CDS join(22869254..22869619,22869988..22870062, 22870723..22870758,22870861..22870972,22871159..22871209, 22871296..22871366,22871503..22871633,22871729..22871794, 22873705..22873805,22873929..22873988,22877424..22877457, 22879982..22880080,22880151..22880210,22882709..22882959, 22883879..22884019,22884137..22884159) /locus_tag="TCM_024174" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29929.m004503; paralog of Thecc1EG042957t1" /codon_start=1 /product="Beta-hexosaminidase 3 isoform 2" /protein_id="EOY08898.1" /db_xref="TAIR:AT1G65590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L7S6" /translation="MGKMASEAFFVVVVVAAAAAVVLANALPVRSERGGVEKDEVNIW PMPAWVSHGRGHLYMSNDFVLSTEGSGYGDASGILKDAFHRMLAVIKLDHVVDANFSA LHDQPLLQGLRIVISSPKDQLQYGIDESYKLMVPSPEKPAYAHLVAPTVYGALHGLQT FSQLCHFNFTSRVIKVHMSPWTIIDQPRFSYRGLLIATSKMKDGIAVKLPIFMDTSRH YLPLPVIRKVIDSMTYAKLNVLHWHIVDTESFPLEIPSYPKLWNGAYSTSEQYSVADA AEIVSFAQKRGINVLAEIDVPGHALSWGTGYPSLWPSKDCQQPLDVSNEFTFKVIDGI LSDFSKIFKFKFVHLGGDEVDTSCWTTTPHISKWLKKNGMNESQAYQYFVLRAQNLAL SHGYEIVNWEETFNNFGNKLSRKTVVHNWLGGGVAQQVVASGLRCIVSNQDKWYLDHL DTTWQEFYANEPLTNITNLKQQKLVIGGEVCMWGERIDGSDIEQTIWPRAAAAAERLW TPYDELAKDPRQVTGRLAHFRCLLNQRGVAAAPLAGQGRAAPEANRGCFW" CDS join(22869254..22869619,22869988..22870062, 22870723..22870758,22870861..22870972,22871296..22871366, 22871503..22871633,22871729..22871794,22873705..22873805, 22873929..22873988,22877424..22877457,22879982..22880080, 22880151..22880210,22882709..22882959,22883879..22884025, 22884137..22884159) /locus_tag="TCM_024174" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29929.m004503; paralog of Thecc1EG042957t1" /codon_start=1 /product="Beta-hexosaminidase 3 isoform 1" /protein_id="EOY08897.1" /db_xref="TAIR:AT1G65590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L7S6" /translation="MGKMASEAFFVVVVVAAAAAVVLANALPVRSERGGVEKDEVNIW PMPAWVSHGRGHLYMSNDFVLSTEGSGYGDASGILKDAFHRMLAVIKLDHVVDANFSA LHDQPLLQGLRIVISSPKDQLQYGIDESYKLMVPSPEKPAYAHLVAPTVYGALHGLQT FSQLCHFNFTSRVIKVHMSPWTIIDQPRFSYRGLLIDTSRHYLPLPVIRKVIDSMTYA KLNVLHWHIVDTESFPLEIPSYPKLWNGAYSTSEQYSVADAAEIVSFAQKRGINVLAE IDVPGHALSWGTGYPSLWPSKDCQQPLDVSNEFTFKVIDGILSDFSKIFKFKFVHLGG DEVDTSCWTTTPHISKWLKKNGMNESQAYQYFVLRAQNLALSHGYEIVNWEETFNNFG NKLSRKTVVHNWLGGGVAQQVVASGLRCIVSNQDKWYLDHLDTTWQEFYANEPLTNIT NLKQQKLVIGGEVCMWGERIDGSDIEQTIWPRAAAAAERLWTPYDELAKDPRQVTGRL AHFRCLLNQRGVAAAPLAGQGRAAPEGPANRGCFW" CDS join(22869254..22869619,22869988..22870062, 22870723..22870758,22870861..22870972,22871296..22871366, 22871503..22871633,22871729..22871794,22873705..22873805, 22873929..22873988,22877424..22877457,22879982..22880080, 22880151..22880210,22882709..22882959,22883879..22884019, 22884137..22884159) /locus_tag="TCM_024174" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29929.m004503; paralog of Thecc1EG042957t1" /codon_start=1 /product="Beta-hexosaminidase 3 isoform 4" /protein_id="EOY08900.1" /db_xref="TAIR:AT1G65590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L7S6" /translation="MGKMASEAFFVVVVVAAAAAVVLANALPVRSERGGVEKDEVNIW PMPAWVSHGRGHLYMSNDFVLSTEGSGYGDASGILKDAFHRMLAVIKLDHVVDANFSA LHDQPLLQGLRIVISSPKDQLQYGIDESYKLMVPSPEKPAYAHLVAPTVYGALHGLQT FSQLCHFNFTSRVIKVHMSPWTIIDQPRFSYRGLLIDTSRHYLPLPVIRKVIDSMTYA KLNVLHWHIVDTESFPLEIPSYPKLWNGAYSTSEQYSVADAAEIVSFAQKRGINVLAE IDVPGHALSWGTGYPSLWPSKDCQQPLDVSNEFTFKVIDGILSDFSKIFKFKFVHLGG DEVDTSCWTTTPHISKWLKKNGMNESQAYQYFVLRAQNLALSHGYEIVNWEETFNNFG NKLSRKTVVHNWLGGGVAQQVVASGLRCIVSNQDKWYLDHLDTTWQEFYANEPLTNIT NLKQQKLVIGGEVCMWGERIDGSDIEQTIWPRAAAAAERLWTPYDELAKDPRQVTGRL AHFRCLLNQRGVAAAPLAGQGRAAPEANRGCFW" CDS join(22870736..22870758,22870899..22870972, 22871159..22871209,22871296..22871366,22871503..22871633, 22871729..22871794,22873705..22873805,22873929..22873988, 22877424..22877457,22879982..22880080,22880151..22880210, 22882709..22882959,22883879..22884019,22884137..22884159) /locus_tag="TCM_024174" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29929.m004503; paralog of Thecc1EG042957t1" /codon_start=1 /product="Beta-hexosaminidase 3 isoform 3" /protein_id="EOY08899.1" /db_xref="TAIR:AT1G65590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L7S6" /translation="MVLYMAFRVIKVHMSPWTIIDQPRFSYRGLLIATSKMKDGIAVK LPIFMDTSRHYLPLPVIRKVIDSMTYAKLNVLHWHIVDTESFPLEIPSYPKLWNGAYS TSEQYSVADAAEIVSFAQKRGINVLAEIDVPGHALSWGTGYPSLWPSKDCQQPLDVSN EFTFKVIDGILSDFSKIFKFKFVHLGGDEVDTSCWTTTPHISKWLKKNGMNESQAYQY FVLRAQNLALSHGYEIVNWEETFNNFGNKLSRKTVVHNWLGGGVAQQVVASGLRCIVS NQDKWYLDHLDTTWQEFYANEPLTNITNLKQQKLVIGGEVCMWGERIDGSDIEQTIWP RAAAAAERLWTPYDELAKDPRQVTGRLAHFRCLLNQRGVAAAPLAGQGRAAPEANRGC FW" CDS join(22870736..22870758,22870899..22870972, 22871296..22871366,22871503..22871633,22871729..22871794, 22873705..22873805,22873929..22873988,22877424..22877457, 22879982..22880080,22880151..22880210,22882709..22882959, 22883879..22884019,22884137..22884159) /locus_tag="TCM_024174" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:29929.m004503; paralog of Thecc1EG042957t1" /codon_start=1 /product="Beta-hexosaminidase 3 isoform 5" /protein_id="EOY08901.1" /db_xref="TAIR:AT1G65590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L7S6" /translation="MVLYMAFRVIKVHMSPWTIIDQPRFSYRGLLIDTSRHYLPLPVI RKVIDSMTYAKLNVLHWHIVDTESFPLEIPSYPKLWNGAYSTSEQYSVADAAEIVSFA QKRGINVLAEIDVPGHALSWGTGYPSLWPSKDCQQPLDVSNEFTFKVIDGILSDFSKI FKFKFVHLGGDEVDTSCWTTTPHISKWLKKNGMNESQAYQYFVLRAQNLALSHGYEIV NWEETFNNFGNKLSRKTVVHNWLGGGVAQQVVASGLRCIVSNQDKWYLDHLDTTWQEF YANEPLTNITNLKQQKLVIGGEVCMWGERIDGSDIEQTIWPRAAAAAERLWTPYDELA KDPRQVTGRLAHFRCLLNQRGVAAAPLAGQGRAAPEANRGCFW" gene complement(22884699..22892192) /locus_tag="TCM_024176" /note="dbxref CacaoGD:Thecc1EG024176" mRNA complement(join(22884699..22885263,22886409..22886475, 22886575..22886633,22887819..22887892,22888018..22888068, 22889207..22889274,22889377..22889461,22889552..22889673, 22889785..22889810)) /locus_tag="TCM_024176" /product="Peptidyl-tRNA hydrolase family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025453001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012279t1" /inference="similar to AA sequence:Phytozome:GSVIVT01025453001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1380t4; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1324t9; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4980t3" mRNA complement(join(22884728..22885263,22886409..22886485, 22886575..22886633,22887819..22887892,22888018..22888068, 22889207..22889274,22889377..22889461,22889552..22889673, 22889785..22889840,22889959..22889973,22891879..22892192)) /locus_tag="TCM_024176" /product="Peptidyl-tRNA hydrolase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025453001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019422t2" /inference="similar to AA sequence:Phytozome:Glyma08g12110.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4980t3" mRNA complement(join(22884729..22885263,22886409..22886475, 22886575..22886633,22887819..22887892,22888018..22888068, 22889207..22889274,22889377..22889461,22889552..22889652, 22889743..22889814)) /locus_tag="TCM_024176" /product="Peptidyl-tRNA hydrolase family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025453001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012279t1" /inference="similar to AA sequence:Phytozome:GSVIVT01025453001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc788t2_C2; alternateUTRof:Thecc1EG024176t4; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1324t9; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4980t3" mRNA complement(join(22884772..22885263,22886409..22886485, 22886575..22886633,22887819..22887892,22888018..22888068, 22889207..22889274,22889377..22889461,22889552..22889652, 22889959..22890024)) /locus_tag="TCM_024176" /product="Peptidyl-tRNA hydrolase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025453001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019422t2" /inference="similar to AA sequence:Phytozome:Glyma08g12110.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4980t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4980t3; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1324t9" mRNA complement(join(22884922..22885263,22886409..22886485, 22886575..22886633,22887819..22887892,22888018..22888068, 22889207..22889274,22889377..22889461,22889552..22889652, 22889743..22889852)) /locus_tag="TCM_024176" /product="Peptidyl-tRNA hydrolase family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025453001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019422t2" /inference="similar to AA sequence:Phytozome:Glyma08g12110.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02755t00002; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4980t3; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1324t9" CDS complement(join(22885132..22885263,22886409..22886485, 22886575..22886633,22887819..22887892,22888018..22888068, 22889207..22889274,22889377..22889461,22889552..22889673, 22889785..22889840,22889959..22889973,22891879..22891931)) /locus_tag="TCM_024176" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG019422t2" /codon_start=1 /product="Peptidyl-tRNA hydrolase family protein isoform 1" /protein_id="EOY08902.1" /db_xref="Phytozome:Glyma08g12110.1" /db_xref="TAIR:AT5G19830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NLS8" /translation="MWSNLIVNYILSRMLRTKFRGDSQKCLAVEPRGKGEIRPLPDYF HDQTEMITRRCFCSGAPRPWLFLGLGNPGDKYKGTRHNVGFEMIDKFAETQGIEMNTL HCKAIFGQGFVGDSAVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVIVFHDDMDLPCG VLRLQNKGGHGSHNGLKSVIYHFRGNREFAQLRIGIGRPPGQMDPKAFLLQKFNASAR ERIDTALQEGVDALKLLLSKGFTESARRFNAEQKYKHIRLQTMPT" CDS complement(join(22885132..22885263,22886409..22886485, 22886575..22886633,22887819..22887892,22888018..22888068, 22889207..22889274,22889377..22889461,22889552..22889652, 22889959..22889986)) /locus_tag="TCM_024176" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG019422t2" /codon_start=1 /product="Peptidyl-tRNA hydrolase family protein isoform 2" /protein_id="EOY08903.1" /db_xref="Phytozome:Glyma08g12110.1" /db_xref="TAIR:AT5G19830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NLS8" /translation="MDFRDSEETEMITRRCFCSGAPRPWLFLGLGNPGDKYKGTRHNV GFEMIDKFAETQGIEMNTLHCKAIFGQGFVGDSAVLLAKPQTYMNLSGESTGPLAAYY KLPLNRVIVFHDDMDLPCGVLRLQNKGGHGSHNGLKSVIYHFRGNREFAQLRIGIGRP PGQMDPKAFLLQKFNASARERIDTALQEGVDALKLLLSKGFTESARRFNAEQKYKHIR LQTMPT" CDS complement(join(22885132..22885263,22886409..22886485, 22886575..22886633,22887819..22887892,22888018..22888068, 22889207..22889274,22889377..22889461,22889552..22889650)) /locus_tag="TCM_024176" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG019422t2" /codon_start=1 /product="Peptidyl-tRNA hydrolase family protein isoform 3" /protein_id="EOY08904.1" /db_xref="Phytozome:Glyma08g12110.1" /db_xref="TAIR:AT5G19830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NLS8" /translation="MITRRCFCSGAPRPWLFLGLGNPGDKYKGTRHNVGFEMIDKFAE TQGIEMNTLHCKAIFGQGFVGDSAVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVIVF HDDMDLPCGVLRLQNKGGHGSHNGLKSVIYHFRGNREFAQLRIGIGRPPGQMDPKAFL LQKFNASARERIDTALQEGVDALKLLLSKGFTESARRFNAEQKYKHIRLQTMPT" CDS complement(join(22885227..22885263,22886409..22886475, 22886575..22886633,22887819..22887892,22888018..22888068, 22889207..22889274,22889377..22889461,22889552..22889650)) /locus_tag="TCM_024176" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG012279t1" /codon_start=1 /product="Peptidyl-tRNA hydrolase family protein isoform 4" /protein_id="EOY08905.1" /db_xref="Phytozome:GSVIVT01025453001" /db_xref="TAIR:AT5G19830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NLS8" /translation="MITRRCFCSGAPRPWLFLGLGNPGDKYKGTRHNVGFEMIDKFAE TQGIEMNTLHCKAIFGQGFVGDSAVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVIVF HDDMDLPCGVLRLQNKGGHGSHNGLKSVIYHFRGNREFAQLRIGRLVKWILRHFCCKS LMHQLENELILLCKRELMH" CDS complement(join(22885227..22885263,22886409..22886475, 22886575..22886633,22887819..22887892,22888018..22888068, 22889207..22889274,22889377..22889461,22889552..22889650)) /locus_tag="TCM_024176" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG012279t1" /codon_start=1 /product="Peptidyl-tRNA hydrolase family protein isoform 4" /protein_id="EOY08906.1" /db_xref="Phytozome:GSVIVT01025453001" /db_xref="TAIR:AT5G19830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NLS8" /translation="MITRRCFCSGAPRPWLFLGLGNPGDKYKGTRHNVGFEMIDKFAE TQGIEMNTLHCKAIFGQGFVGDSAVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVIVF HDDMDLPCGVLRLQNKGGHGSHNGLKSVIYHFRGNREFAQLRIGRLVKWILRHFCCKS LMHQLENELILLCKRELMH" mobile_element complement(22896862..22896967) /note="source:CACAO_M_E12297_F14_scaffold_3 21531 21652" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22902293..22903519 /note="source:INTACT257_F186_scaffold_6-int 1871 3016" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22906577..22906763) /note="source:CACAO_Again_on_E14_scaffold_1 11061 11247" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(22907818..22908080) /note="source:CACAO_Again_on_E14_scaffold_1 1 306" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(22909616..22910830) /note="source:CACAO_M_E1841_F5_scaffold_1 13929 15161" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(22910997..22911007) /note="source:INTACT1817F_F27_scaffold_11-int 542 551" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22911008..22912659 /note="source:INTACT860F_F97_scaffold_5-int 1 1652" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22913121..22917564 /note="source:INTACT860F_F97_scaffold_5-int 1653 6096" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 22924474..22926469 /locus_tag="TCM_024178" /note="dbxref CacaoGD:Thecc1EG024178" mRNA join(22924474..22924831,22926071..22926469) /locus_tag="TCM_024178" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.94 coverage" CDS join(22924790..22924831,22926071..22926271) /locus_tag="TCM_024178" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08907.1" /translation="MRYLLISTSKALIKLLHSPFKAQHPPSDHNPHRSVDALEGTRSS LTDRTRHFLVVVMGKYRLQLWCTAYYTTAWTDIVSG" gene 22926596..22929496 /locus_tag="TCM_024180" /note="dbxref CacaoGD:Thecc1EG024180" mRNA join(22926596..22926779,22927591..22928097, 22928562..>22929163) /locus_tag="TCM_024180" /product="Myb domain protein 5 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s21120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025910t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s04240.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc400t4; inference alignment:Newbler:10:TSA:cgbaB_g09739t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc416t2_C2" gene complement(22926648..>22935989) /locus_tag="TCM_024179" /note="dbxref CacaoGD:Thecc1EG024179" mRNA complement(join(22926648..22926779,22927591..22928113, 22928632..22929085,22932870..22932944, 22935801..>22935989)) /locus_tag="TCM_024179" /product="Uncharacterized protein" /note="quality class is strongpartial, express is strong, homology is none, intron is strong, protein is utrpoor_partial5; similar to RNA sequence, EST 0.54 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5053t4" mRNA join(22927583..22928097,22928562..22929496) /locus_tag="TCM_024180" /product="Myb domain protein 5 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s21120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025910t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s04240.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09739t00001" CDS join(22927766..22928097,22928562..22929216) /locus_tag="TCM_024180" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG025910t1" /codon_start=1 /product="Myb domain protein 5 isoform 1" /protein_id="EOY08908.1" /db_xref="Phytozome:POPTR_0001s04240.1" /db_xref="TAIR:AT3G13540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GY74" /translation="MRNPATATTPATKITTTTTRNNSGAKTPCCIKVGLKRGPWTPEE DELLASYIKREGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGQIAPDEEDLIL RLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLINQGIDPRTHKPLNPQQSPSD LKASSSSKANRGGATIPKPNNPASSSLEETSSGQITAHKENEYFQSNNTLHHYQTETA MAHGFTSLLNCEDSGIEMRSNKNQGISNEEDEDINYCTDDVFSSFLNSLINEEAFANQ NQMQQQTNVTAQADALVSVTATTFGLVQGWESPIMSSNFNQNDPNRVKDHLN" CDS join(22927766..22928097,22928562..>22929162) /locus_tag="TCM_024180" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG025910t1" /codon_start=1 /product="Myb domain protein 5 isoform 2" /protein_id="EOY08909.1" /db_xref="Phytozome:POPTR_0001s04240.1" /db_xref="TAIR:AT3G13540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GY74" /translation="MRNPATATTPATKITTTTTRNNSGAKTPCCIKVGLKRGPWTPEE DELLASYIKREGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGQIAPDEEDLIL RLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLINQGIDPRTHKPLNPQQSPSD LKASSSSKANRGGATIPKPNNPASSSLEETSSGQITAHKENEYFQSNNTLHHYQTETA MAHGFTSLLNCEDSGIEMRSNKNQGISNEEDEDINYCTDDVFSSFLNSLINEEAFANQ NQMQQQTNVTAQADALVSVTATTFGLVQGWESPIM" gene 22930277..22932628 /locus_tag="TCM_024182" /note="dbxref CacaoGD:Thecc1EG024182" mRNA join(22930277..22930786,22931838..22932628) /locus_tag="TCM_024182" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage" CDS 22931849..22932100 /locus_tag="TCM_024182" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08911.1" /translation="MPWLSSRPLIGKDSKRAVCIPPRDDELKLNVDGLIRGKVGLARC GGVLRDKDGNVVGILFGIIQQCTSLGYIRTALDLFIISS" CDS complement(join(22932875..22932944,22935801..>22935988)) /locus_tag="TCM_024179" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08910.1" /translation="KRTSESLLLFSYSFLFCFILSLHCKDLLDPIFFYHRFTNIMPMH SAQESRNRLGRLFQHKVFRNEEEAAIIQQQVYCRYPTHEAL" gene 22937584..22944488 /locus_tag="TCM_024183" /note="dbxref CacaoGD:Thecc1EG024183" mRNA join(22937584..22938142,22938229..22938439, 22940761..22940927,22941050..22941132,22943886..22944488) /locus_tag="TCM_024183" /product="F5I14.9 protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma18g53600.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019784t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s18530.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03728t00001" CDS join(22937921..22938142,22938229..22938439, 22940761..22940927,22941050..22941132,22943886..22944264) /locus_tag="TCM_024183" /note="paralog of Thecc1EG019784t1" /codon_start=1 /product="F5I14.9 protein" /protein_id="EOY08912.1" /db_xref="Phytozome:POPTR_0010s18530.1" /db_xref="TAIR:AT1G65560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04473" /translation="MATVKNGQVVLKGYIEGAPKKDDMEMKIGTVELKAPKGSGALLV KNLYLSCDPYMRARMRNFHGSYIQPFVPGQPIEGFGVAKVLDSDNPNFKPGDFISGFT CWEEYSLIHNTSQLRKIQPDDSIPLSYHLGLLGIAPFLRNLLCMPGFTAYAGFYEICS PKKGECVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKE ETDLDAALKRYFPQGIDIYFDNVGGAMLDAALLNMQVHGRIAVCGMVSLHSYSDPKGI HNLFCLVTKRIKMQGFLQSDYMHKFPQFLEHVTDSYKQGKIVYIEDMTEGLETAPAAF VGLFSGKNIGKQVVCVARE" mobile_element complement(22947016..22947125) /note="source:scaffold_2_CACTA_0276 15749 15862" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22947863..22947909) /note="source:scaffold_5_CACTA_0586 11639 11685" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22947930..22947969 /note="source:scaffold_5_CACTA_0586 11645 11684" /mobile_element_type="transposon:TIR/CACTA" mobile_element 22953405..22953582 /note="source:INTACT711_F307_scaffold_9-int 8293 8472" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22955574..22958354 /note="source:CACAO_M_S_E65823_F87_scaffold_5 1 2781" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 22963255..22968803 /note="source:INTACT606F_F361_scaffold_4-int 23 5562" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(22971756..22990261) /locus_tag="TCM_024185" /note="dbxref CacaoGD:Thecc1EG024185" mRNA complement(join(22971756..22972889,22975797..22975974, 22976076..22976255,22978004..22978284,22980791..22980985, 22987830..22990208)) /locus_tag="TCM_024185" /product="Vps51/Vps67 family (components of vesicular transport) protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s18470.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s18470.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc316t1" mRNA complement(join(22971992..22972011,22972208..22972889, 22975797..22975974,22976076..22976255,22978004..22978284, 22980791..22980985,22987830..22990261)) /locus_tag="TCM_024185" /product="Vps51/Vps67 family (components of vesicular transport) protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s18470.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s18470.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc324t3; alternateUTRof:Thecc1EG024185t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc316t1" CDS complement(join(22972716..22972889,22975797..22975974, 22976076..22976255,22978004..22978284,22980791..22980985, 22987830..22990019)) /locus_tag="TCM_024185" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Vps51/Vps67 family (components of vesicular transport) protein isoform 1" /protein_id="EOY08913.1" /db_xref="Phytozome:POPTR_0010s18470.1" /db_xref="TAIR:AT5G16300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HI08" /translation="MRMRFSSGSGDDRDAESLFRTNPISEIRNVESATNKQIQDKKEE LRQLVGTRYRDLIDSADSILQMKSASESISSNISSIHHSICSLSLSVSEAPSPKLRTP NPTTRLRIYGIACRVKYLVDTPENIWGCLDESMFLEAAARYVRAKHVHSNLMLPNRDL DHNNILSNFPLLQHQWQIVESFKAQISQRSRERLMDRGLPVAAYADALAAVAVIDDLD PEQVLGLFLETRKTWILHTLTASAGNADATSSIAISVFCDLLSIIQVSIAQVGELFLH VLNDMPLFYKVILGSPPASQLFGGIPNPDDEVRLWKSFRDKLESVTVMLHKTFISNTC LRWLRDCGTQIVSKINGRYLLDAIPSGQDLGTAEKLIRQTMDSKEVLEGSLEWLKSVF GSEIELPWNRIRELVLEGDLDLWDEIFEDAFVRRMKVIIDSGFEDLTRAVNVSDVIHT IGVAAGEKMDFQAYLNRPSTSGGVWFTEPNNVKKPGPLLGNKALPEEDNFQSCLNAYF GLEVSQIRDGVDSCCQSILEDLLSFLESAKASLRLKDLVPYLQKKCYDSVSMILKELK TELDILYSSIESEHKEGGSVPPPIIVERSLFIGRLLFSFENYSKHIPLILGSPRFWVK YTVPAVFEKLPSLLWLSRAATNSPVSDSLGMQMVTSSQRQSSAATAALLGANESASPK LDELRKITRELCIRAYSLWMSWLSDGFSLILSLELEQDDGLSATAPLRGWEETVVKQE QSDEGSSEMKISLPSMPSLYVMSFLCRACEEIHRIGGHVLDKSIVQKFALSLIEKVIS IYENFLSTREACGAQVSEKGILQVLLDIRFAADVLSGGDFNVNEEFSSTPKSKSSFKR KQDQIQTKSFIRERIDGLIYSLSQKLDPIDWLTYEPYLWENERQSYLRHAVLFGFFVQ LNRMYTDTMQKLPTNSESNIMRCSVVPRFKYLPISAPALSSRGTSGTPITAASNDITS RSSWKAYTNGELSRKVDLDDNPSFGVATPFLKSFMQVGSRFGESTLKLGSMLTDGQVG IFKDRSAAAMSTFGDILPVQAAGLLSSFTTTRSDS" CDS complement(join(22972716..22972889,22975797..22975974, 22976076..22976255,22978004..22978284,22980791..22980985, 22987830..22990019)) /locus_tag="TCM_024185" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Vps51/Vps67 family (components of vesicular transport) protein isoform 1" /protein_id="EOY08914.1" /db_xref="Phytozome:POPTR_0010s18470.1" /db_xref="TAIR:AT5G16300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HI08" /translation="MRMRFSSGSGDDRDAESLFRTNPISEIRNVESATNKQIQDKKEE LRQLVGTRYRDLIDSADSILQMKSASESISSNISSIHHSICSLSLSVSEAPSPKLRTP NPTTRLRIYGIACRVKYLVDTPENIWGCLDESMFLEAAARYVRAKHVHSNLMLPNRDL DHNNILSNFPLLQHQWQIVESFKAQISQRSRERLMDRGLPVAAYADALAAVAVIDDLD PEQVLGLFLETRKTWILHTLTASAGNADATSSIAISVFCDLLSIIQVSIAQVGELFLH VLNDMPLFYKVILGSPPASQLFGGIPNPDDEVRLWKSFRDKLESVTVMLHKTFISNTC LRWLRDCGTQIVSKINGRYLLDAIPSGQDLGTAEKLIRQTMDSKEVLEGSLEWLKSVF GSEIELPWNRIRELVLEGDLDLWDEIFEDAFVRRMKVIIDSGFEDLTRAVNVSDVIHT IGVAAGEKMDFQAYLNRPSTSGGVWFTEPNNVKKPGPLLGNKALPEEDNFQSCLNAYF GLEVSQIRDGVDSCCQSILEDLLSFLESAKASLRLKDLVPYLQKKCYDSVSMILKELK TELDILYSSIESEHKEGGSVPPPIIVERSLFIGRLLFSFENYSKHIPLILGSPRFWVK YTVPAVFEKLPSLLWLSRAATNSPVSDSLGMQMVTSSQRQSSAATAALLGANESASPK LDELRKITRELCIRAYSLWMSWLSDGFSLILSLELEQDDGLSATAPLRGWEETVVKQE QSDEGSSEMKISLPSMPSLYVMSFLCRACEEIHRIGGHVLDKSIVQKFALSLIEKVIS IYENFLSTREACGAQVSEKGILQVLLDIRFAADVLSGGDFNVNEEFSSTPKSKSSFKR KQDQIQTKSFIRERIDGLIYSLSQKLDPIDWLTYEPYLWENERQSYLRHAVLFGFFVQ LNRMYTDTMQKLPTNSESNIMRCSVVPRFKYLPISAPALSSRGTSGTPITAASNDITS RSSWKAYTNGELSRKVDLDDNPSFGVATPFLKSFMQVGSRFGESTLKLGSMLTDGQVG IFKDRSAAAMSTFGDILPVQAAGLLSSFTTTRSDS" mobile_element complement(22996853..22996901) /note="source:scaffold_5_CACTA_0586 11646 11695" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(22998813..22999109) /note="source:scaffold_5_CACTA_0586 11451 11769" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23002205..23002289) /note="source:CACAO_M_S_E101805_F5_scaffold_9 1043 1128" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23002292..23002374 /note="source:INTACT711_F307_scaffold_9-int 11766 11848" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23003387..23003668 /note="source:INTACT135F_F90_scaffold_2-int 5635 6919" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 23005495..23013919 /note="source:CACAO_M_E59541_F5_scaffold_9 184 8615" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23018399..23018479) /note="source:scaffold_8_CACTA_0860 11790 11872" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23019516..23022265) /note="source:scaffold_2_CACTA_0256 11255 13984" /mobile_element_type="transposon:TIR/CACTA" gene complement(23022299..23029036) /locus_tag="TCM_024189" /note="dbxref CacaoGD:Thecc1EG024189" mRNA complement(join(23022299..23022544,23027063..23027645, 23028893..23029036)) /locus_tag="TCM_024189" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045047t1" /inference="similar to AA sequence:Phytozome:Glyma09g10240.1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" mobile_element complement(23024075..23027040) /note="source:CACAO_M_E27121_F246_scaffold_4 1 2964" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(23027092..23027645,23028893..23028923)) /locus_tag="TCM_024189" /note="paralog of Thecc1EG045047t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08915.1" /db_xref="Phytozome:Glyma09g10240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H021" /translation="MFIKAWKEIEDDTVLIYKLSLDCLLNIKRVLKCFQAILRLKINF HKNYFFEVGVNQHQIGGYAERIRCKPDTLLTTYLGLPLEGRVNSLKVWQLVVEKFESK LFMWKSRYLSMKGKLTFLKSILRSLPIFLMSILQILVSIKEKLARIQRSFFFKEDQWI VEKCIMLIGLPYVFIRILEDWVLWTCPYKPGSIY" mobile_element 23029212..23032160 /note="source:CACAO_M_E43498_F302_scaffold_5 1 2949" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23041944..23045067) /note="source:INTACT597_F267_scaffold_2-int 10417 13537" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23045168..23046685 /note="source:INTACT697_F302_scaffold_2-int 12304 13864" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23045911..23047579) /note="source:INTACT597_F267_scaffold_2-int 8069 9769" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23046993..23048304 /note="source:CACAO_M_E65323_F12_scaffold_9 7737 9054" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23048305..23051084 /note="source:CACAO_M_E43501_F15_scaffold_5 1 2780" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23050893..23051108) /note="source:INTACT597_F267_scaffold_2-int 7954 8161" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23051085..23051768 /note="source:INTACT118_F5_scaffold_9-int 4092 4777" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23051093..23051850) /note="source:INTACT215F_F14_scaffold_3-int 10398 11133" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23051851..23054855 /note="source:CACAO_M_S_E65837_F7_scaffold_5 1 3005" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23059536..23060063) /note="source:INTACT215F_F14_scaffold_3-int 9579 10107" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(23061720..23081514) /locus_tag="TCM_024191" /note="dbxref CacaoGD:Thecc1EG024191" mRNA complement(join(23061720..23062460,23062636..23062830, 23064028..23064078,23064442..23064645,23066592..23066719, 23067123..23067382,23068242..23068437,23069005..23069250, 23069320..23070229,23081298..23081514)) /locus_tag="TCM_024191" /product="DegP protease 10 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01003912001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016834t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s07940.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc720t4" mRNA complement(join(23062258..23062460,23064028..23064078, 23064442..23064645,23066592..23066719,23067123..23067382, 23068242..23068437,23069005..23069250,23069320..23069887)) /locus_tag="TCM_024191" /product="DegP protease 10 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01003912001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016834t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s07940.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4997t2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc720t4" mRNA complement(join(23062258..23062830,23064028..23064082, 23064442..23064645,23066592..23066719,23067123..23067382, 23068242..23068437,23069005..23069250,23069320..23069887)) /locus_tag="TCM_024191" /product="DegP protease 10 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01003912001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016834t2" /inference="similar to AA sequence:Phytozome:POPTR_0008s07940.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g4997t1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc720t4" CDS complement(join(23062425..23062460,23064028..23064078, 23064442..23064645,23066592..23066719,23067123..23067382, 23068242..23068437,23069005..23069250,23069320..23069812)) /locus_tag="TCM_024191" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG016834t1" /codon_start=1 /product="DegP protease 10 isoform 2" /protein_id="EOY08917.1" /db_xref="Phytozome:POPTR_0008s07940.1" /db_xref="TAIR:AT5G36950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FIV6" /translation="MTMPVRGLASAHFAHNSCRVGKSLHKHTFAPLGFLSSTIGEEAK RMLGSSVRTLRRLRCCNNSSSLLLLGRDCCRNGTTVSKRKVLPLCCKGESNISIFDIG ERQSSIQRWYVVRSKRSLHTETDAYLAIELALDSVVKIFTVTSSPNYFLPWQNKSQRE TMGSGFVIPGKKILTNAHVVADHTFVLVRKHGSPTKYRAEVLAVGHECDLAILVVESQ EFWEGVNFLELGDIPFLQEAVAVVGYPQGGDNISVTKGVVSRVEPTQYVHGATQLMAI QIDAAINPGNSGGPAIMGNKVAGVAFQNLSGAENIGYIIPVPVIKHFIAGVEESGKYV GFCSMGLSCQPTENVQLRNHFKMQPQMTGVLVSKINPLSDAHRVLKKDDIILEFDGVP IANDGTVPFRNRERITFDHLVSMKKPNETAVVKVLRNGEEHAFTITLRPLQPLVPVHQ FDKLPSYYIFAGLVFVPLTQPYLHEYGEDWYNTSPRRLCERALRELPKQAGEQLVILS QVLMDDINAGYERLAELQCRYNISTLMGL" CDS complement(join(23062425..23062460,23062636..23062830, 23064028..23064078,23064442..23064645,23066592..23066719, 23067123..23067382,23068242..23068437,23069005..23069250, 23069320..23069812)) /locus_tag="TCM_024191" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG016834t1" /codon_start=1 /product="DegP protease 10 isoform 1" /protein_id="EOY08916.1" /db_xref="Phytozome:POPTR_0008s07940.1" /db_xref="TAIR:AT5G36950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FIV6" /translation="MTMPVRGLASAHFAHNSCRVGKSLHKHTFAPLGFLSSTIGEEAK RMLGSSVRTLRRLRCCNNSSSLLLLGRDCCRNGTTVSKRKVLPLCCKGESNISIFDIG ERQSSIQRWYVVRSKRSLHTETDAYLAIELALDSVVKIFTVTSSPNYFLPWQNKSQRE TMGSGFVIPGKKILTNAHVVADHTFVLVRKHGSPTKYRAEVLAVGHECDLAILVVESQ EFWEGVNFLELGDIPFLQEAVAVVGYPQGGDNISVTKGVVSRVEPTQYVHGATQLMAI QIDAAINPGNSGGPAIMGNKVAGVAFQNLSGAENIGYIIPVPVIKHFIAGVEESGKYV GFCSMGLSCQPTENVQLRNHFKMQPQMTGVLVSKINPLSDAHRVLKKDDIILEFDGVP IANDGTVPFRNRERITFDHLVSMKKPNETAVVKVLRNGEEHAFTITLRPLQPLVPVHQ FDKLPSYYIFAGLVFVPLTQPYLHEYGEDWYNTSPRRLCERALRELPKQAGEQLVILS QVLMDDINAGYERLAELQVKKVNGIEIQNLKHLCQLVENCSTESLRFDLDDDRVVALN FESARIATSRILERHRIPSRMSSDLCRYNISTLMGL" mRNA complement(join(23062431..23062830,23064028..23064078, 23064442..23064645,23066592..23066703,23067123..23067382, 23068242..23068437,23069005..23069250,23069320..23069943)) /locus_tag="TCM_024191" /product="DegP protease 10 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01003912001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016834t1" /inference="similar to AA sequence:Phytozome:GSVIVT01003912001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc720t2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc720t4" mRNA complement(join(23062431..23062830,23064028..23064078, 23066592..23066719,23067123..23067382,23068242..23068437, 23069005..23069250,23069320..23069943)) /locus_tag="TCM_024191" /product="DegP protease 10 isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01003912001" /inference="similar to AA sequence:Phytozome:POPTR_0008s07940.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc720t1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc720t4" CDS complement(join(23062603..23062830,23064028..23064078, 23066592..23066719,23067123..23067382,23068242..23068437, 23069005..23069250,23069320..23069812)) /locus_tag="TCM_024191" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="DegP protease 10 isoform 5" /protein_id="EOY08920.1" /db_xref="Phytozome:POPTR_0008s07940.1" /db_xref="TAIR:AT5G36950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FIV6" /translation="MTMPVRGLASAHFAHNSCRVGKSLHKHTFAPLGFLSSTIGEEAK RMLGSSVRTLRRLRCCNNSSSLLLLGRDCCRNGTTVSKRKVLPLCCKGESNISIFDIG ERQSSIQRWYVVRSKRSLHTETDAYLAIELALDSVVKIFTVTSSPNYFLPWQNKSQRE TMGSGFVIPGKKILTNAHVVADHTFVLVRKHGSPTKYRAEVLAVGHECDLAILVVESQ EFWEGVNFLELGDIPFLQEAVAVVGYPQGGDNISVTKGVVSRVEPTQYVHGATQLMAI QIDAAINPGNSGGPAIMGNKVAGVAFQNLSGAENIGYIIPVPVIKHFIAGVEESGKYV GFCSMGLSCQPTENVQLRNHFKMQPQMTGVLVSKINPLSDAHRVLKKDDIILEFDGVP IANDGTVPFRNRERITFDHLVSMKKPNETAVVKVLRNGEEHAFTITLRPVLMDDINAG YERLAELQVKKVNGIEIQNLKHLCQLVENCSTESLRFDLDDDRVVALNFESARIATSR ILERHRIPSRMSSDLVSEQNNLEID" CDS complement(join(23064065..23064082,23064442..23064645, 23066592..23066719,23067123..23067382,23068242..23068437, 23069005..23069250,23069320..23069812)) /locus_tag="TCM_024191" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG016834t2" /codon_start=1 /product="DegP protease 10 isoform 3" /protein_id="EOY08918.1" /db_xref="Phytozome:POPTR_0008s07940.1" /db_xref="TAIR:AT5G36950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FIV6" /translation="MTMPVRGLASAHFAHNSCRVGKSLHKHTFAPLGFLSSTIGEEAK RMLGSSVRTLRRLRCCNNSSSLLLLGRDCCRNGTTVSKRKVLPLCCKGESNISIFDIG ERQSSIQRWYVVRSKRSLHTETDAYLAIELALDSVVKIFTVTSSPNYFLPWQNKSQRE TMGSGFVIPGKKILTNAHVVADHTFVLVRKHGSPTKYRAEVLAVGHECDLAILVVESQ EFWEGVNFLELGDIPFLQEAVAVVGYPQGGDNISVTKGVVSRVEPTQYVHGATQLMAI QIDAAINPGNSGGPAIMGNKVAGVAFQNLSGAENIGYIIPVPVIKHFIAGVEESGKYV GFCSMGLSCQPTENVQLRNHFKMQPQMTGVLVSKINPLSDAHRVLKKDDIILEFDGVP IANDGTVPFRNRERITFDHLVSMKKPNETAVVKVLRNGEEHAFTITLRPLQPLVPVHQ FDKLPSYYIFAGLVFVPLTQPYLHEYGEDWYNTSPRRLCERALRELPKQAGEQLVILS QSGFDG" CDS complement(join(23066693..23066703,23067123..23067382, 23068242..23068437,23069005..23069250,23069320..23069812)) /locus_tag="TCM_024191" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG016834t1" /codon_start=1 /product="DegP protease 10 isoform 4" /protein_id="EOY08919.1" /db_xref="Phytozome:GSVIVT01003912001" /db_xref="TAIR:AT5G36950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FIV6" /translation="MTMPVRGLASAHFAHNSCRVGKSLHKHTFAPLGFLSSTIGEEAK RMLGSSVRTLRRLRCCNNSSSLLLLGRDCCRNGTTVSKRKVLPLCCKGESNISIFDIG ERQSSIQRWYVVRSKRSLHTETDAYLAIELALDSVVKIFTVTSSPNYFLPWQNKSQRE TMGSGFVIPGKKILTNAHVVADHTFVLVRKHGSPTKYRAEVLAVGHECDLAILVVESQ EFWEGVNFLELGDIPFLQEAVAVVGYPQGGDNISVTKGVVSRVEPTQYVHGATQLMAI QIDAAINPGNSGGPAIMGNKVAGVAFQNLSGAENIGYIIPVPVIKHFIAGVEESGKYV GFCSMGLSCQPTENVQLRNHFKMQPQMTGVLVSKINPLSDAHRVLKKDDIILEFDGVP IANDGTGSG" mobile_element 23070634..23072372 /note="source:scaffold_2_CACTA_0253 7254 8995" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23072306..23072397 /note="source:INTACT415F_F22_scaffold_4-int 10360 10446" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23072507..23072763 /note="source:scaffold_5_CACTA_0607 2 254" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23072923..23073017 /note="source:scaffold_5_CACTA_0607 120 214" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23075778..23075834 /note="source:scaffold_5_CACTA_0607 868 924" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23075828..23076280 /note="source:scaffold_5_CACTA_0607 3860 4311" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23078627..23081217) /note="source:scaffold_5_CACTA_0585 7018 9515" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23082016..23082699 /note="source:INTACT785_F332_scaffold_2-int 4752 5479" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23082696..23084381 /note="source:CACAO_M_E52239_F256_scaffold_7 20731 22438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23084990..23085121 /note="source:scaffold_5_CACTA_0607 4301 4430" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23085177..23085225 /note="source:scaffold_5_CACTA_0607 4382 4430" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23088361..23088790) /note="source:INTACT785_F332_scaffold_2-int 1149 1582" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23088958..23089204) /note="source:INTACT785_F332_scaffold_2-int 779 1023" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23089206..23092168 /note="source:CACAO_M_S_E83940_F228_scaffold_6 1 2965" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23092168..23095391 /note="source:INTACT741_F17_scaffold_3-int 737 3950" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23092169..23092765 /note="source:scaffold_2_CACTA_0260 3895 4509" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23097365..23106002 /note="source:INTACT1313F_F380_scaffold_7-int 5716 14391" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23104121..23106627) /note="source:CACAO_M_E12044_F76_scaffold_2 6693 9205" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23107469..23107835) /note="source:CACAO_M_E12044_F76_scaffold_2 19727 20054" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23107542..23109197 /note="source:INTACT157_F155_scaffold_1-int 12890 14525" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23109198..23109792 /note="source:CACAO_M_E4078_F134_scaffold_2 1321 1914" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23109767..23109839 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3184 3256" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23109774..23109846) /note="source:CACAO_M_S_E31635_F14_scaffold_3 3181 3254" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23113798..23114616) /note="source:scaffold_5_CACTA_0607 16 831" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23118000..23118278 /note="source:INTACT415F_F22_scaffold_4-int 4522 4800" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 23119257..23121919 /locus_tag="TCM_024196" /note="dbxref CacaoGD:Thecc1EG024196" mRNA join(23119257..23119338,23120413..23120480, 23120778..23120926,23121012..23121068,23121228..23121266, 23121367..23121799) /locus_tag="TCM_024196" /product="Basic transcription factor 3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029373001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024222t1" /inference="similar to AA sequence:Phytozome:Glyma01g18780.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00442t00001; inference alignment:Newbler:10:TSA:cgbaL_g00442t00001" mRNA join(23119367..23119404,23120413..23120480, 23120778..23120926,23121012..23121068,23121228..23121266, 23121367..23121919) /locus_tag="TCM_024196" /product="Basic transcription factor 3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029373001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024222t1" /inference="similar to AA sequence:Phytozome:Glyma01g18780.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:PASA:2:TSA:puevd3b023404t1a2; alternateUTRof:Thecc1EG024196t1; inference alignment:Newbler:10:TSA:cgbaL_g00442t00001" CDS join(23120413..23120480,23120778..23120926, 23121012..23121068,23121228..23121266,23121367..23121539) /locus_tag="TCM_024196" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG024222t1" /codon_start=1 /product="Basic transcription factor 3 isoform 1" /protein_id="EOY08921.1" /db_xref="Phytozome:Glyma01g18780.1" /db_xref="TAIR:AT1G17880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93ZB5" /translation="MNVEKLMKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLK RIGVNAIPAIEEVNIFKDEVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPGIIN QLGPDNLDNLRKLAEQFQKQVPTTGDGATATQEEDDDDVPQLVGDETFEAAAEEGQVA K" CDS join(23120413..23120480,23120778..23120926, 23121012..23121068,23121228..23121266,23121367..23121539) /locus_tag="TCM_024196" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG024222t1" /codon_start=1 /product="Basic transcription factor 3 isoform 1" /protein_id="EOY08922.1" /db_xref="Phytozome:Glyma01g18780.1" /db_xref="TAIR:AT1G17880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93ZB5" /translation="MNVEKLMKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLK RIGVNAIPAIEEVNIFKDEVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPGIIN QLGPDNLDNLRKLAEQFQKQVPTTGDGATATQEEDDDDVPQLVGDETFEAAAEEGQVA K" mobile_element 23122172..23125133 /note="source:CACAO_M_E4417_F33_scaffold_2 1 2959" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23125135..23126978 /note="source:scaffold_5_CACTA_0607 4882 6668" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23128752..23129462) /note="source:CACAO_M_E44899_F328_scaffold_6 2537 3194" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23131927..23132038 /note="source:scaffold_5_CACTA_0611 5920 6029" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23135654..23136125 /note="source:CACAO_M_E53009_F42_scaffold_8 9924 10393" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23136670..23137406 /note="source:CACAO_M_E53009_F42_scaffold_8 10938 11654" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23137930..23138800 /note="source:CACAO_M_E53009_F42_scaffold_8 2253 3106" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23143949..23143972 /note="source:scaffold_8_CACTA_0857 995 1014" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23143973..23144143) /note="source:CACAO_M_E84927_F323_scaffold_10 3277 3447" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23144915..23146026) /note="source:CACAO_M_E47430_F82_scaffold_6 1 1150" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23149505..23151807) /note="source:CACAO_M_E178_F2_scaffold_1 1871 4189" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23151809..23151876) /note="source:INTACT6_F2_scaffold_4-int 6021 6089" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23151879..23154841 /note="source:CACAO_M_E53319_F273_scaffold_8 1 2959" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23154842..23155569 /note="source:INTACT525_F2_scaffold_2-int 5361 6099" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23155570..23155843 /note="source:INTACT525_F2_scaffold_2-int 2313 2586" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23155846..23158051) /note="source:CACAO_M_E11804_F2_scaffold_2 1274 3459" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23158051..23158941) /note="source:INTACT34_F115_scaffold_5-int 2227 3116" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23159045..23161083 /note="source:CACAO_M_S_E122136_F76_scaffold_10 2243 4278" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 23159605..23178062 /locus_tag="TCM_024199" /note="dbxref CacaoGD:Thecc1EG024199" mRNA join(23159605..23159734,23162972..23163532, 23164297..23164479,23164848..23164902,23165761..23165972, 23166268..23166413,23166528..23166681,23167456..23167525, 23170656..23170801,23170913..23170958,23171080..23171132, 23171633..23171777,23172528..23172646,23172766..23172837, 23172917..23173020,23174321..23174377,23174495..23174693, 23176472..23176618,23177671..23178062) /locus_tag="TCM_024199" /product="Alpha-L-arabinofuranosidase 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g30450.1" /inference="similar to AA sequence:ricco:30045.m000479" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11707t00001" mobile_element 23160985..23161098 /note="source:scaffold_5_CACTA_0611 5920 6034" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23161083..23162299 /note="source:CACAO_M_S_E51565_F2_scaffold_4 12736 13997" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23164168..23164256) /note="source:scaffold_3_CACTA_0382 1861 1925" /mobile_element_type="transposon:TIR/CACTA" CDS join(23164300..23164479,23164848..23164902, 23165761..23165972,23166268..23166413,23166528..23166681, 23167456..23167525,23170656..23170801,23170913..23170958, 23171080..23171132,23171633..23171777,23172528..23172646, 23172766..23172837,23172917..23173020,23174321..23174377, 23174495..23174693,23176472..23176618,23177671..23177820) /locus_tag="TCM_024199" /note="dbxref ricco:30045.m000479" /codon_start=1 /product="Alpha-L-arabinofuranosidase 1" /protein_id="EOY08923.1" /db_xref="TAIR:AT3G10740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SG80" /translation="MGYHKVPCSVLFLFLFISVCFSYQCLADGVEANQTGQLLIDASE GSGHPIPDTLFGIFFEEINHAGAGGLWAELVSNRGFEAGGSNIPSNIYPWSIIGDESS LIVSTDRSSCFERNKVALRMEVLCDSEGTHICPSGGVGIYNPGFWGMHSTSFLIQNIE QGKSYKVVFYVRSTAAVNISVSFSGSNGLQTLASANIIASASDVSNWTKMEVLLEAKA TNQNSRLQLTTTKEGVIWFDQVSAMPLDTYKGQGFRNDLIEMLADIKPRFIRFPGGCF VEGEWLRNAFRWKESIGPWEERPGHFGDVWMYWTDDGLGYFEFLQLAEDLDALPIWVF NNGISHNDQVDTSTILPFVQEALDGIEFARGDPNSEWGAVRAAMGHPEPFDLRYVAIG NEDCGKKNYRGNYLKFYDAIRRAYPDIKMISNCDGSSHQLDHPADFYDFHVYTSASNL FSMSHQFDRTSRTGPKAFVSEYAVTGKDAGTGSLLAALAEAGFLIGLEKNSDVVQMAS YAPLFVNSNDRRWNPDAIVFDSYQVYGTPSYWVQHFFIESSGATLLNATLQTNSSMSL VASAITWQTSKDDQTYIRIKVVNFGSNSVNLKISVSGLDPNSVKLSGTKMTVLTSTNL MDENSFKEPTKVVPTESLLKNADKEMTVQLSPHSFTSIDLLKESVSLRITEADSTSVS SI" gene 23164455..23165664 /locus_tag="TCM_024200" /note="dbxref CacaoGD:Thecc1EG024200" mRNA join(23164455..23164479,23164848..23165664) /locus_tag="TCM_024200" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc598t7" CDS 23165198..23165527 /locus_tag="TCM_024200" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08924.1" /translation="MKSQSKLLITRWIIPHFHGRDLIFNWICMEFSYFSCYRLVDFAL CVLFGLSYSVCISLLVIGLCSFQFVGLGWFLRYLICSIIWKNFITECIMLFLLAITVD MRRAFVF" gene 23174869..23176618 /locus_tag="TCM_024201" /note="dbxref CacaoGD:Thecc1EG024201" mRNA 23174869..23176618 /locus_tag="TCM_024201" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc525t12" CDS 23175014..23175298 /locus_tag="TCM_024201" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08925.1" /translation="MYKCMKLLLCSFLVHVFAHSGCVIGYCYPSSLFWPLSVKSFAAP STLYFLHRYLLHRLDLWFTSPDVRLPKNRSSVFVGFFFCLLISDTSRLLR" mobile_element complement(23183802..23184863) /note="source:INTACT522_F240_scaffold_3-int 3272 4342" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 23185518..23187067 /locus_tag="TCM_024202" /note="dbxref CacaoGD:Thecc1EG024202" mRNA join(23185518..23185934,23186181..23186558, 23186728..23187067) /locus_tag="TCM_024202" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025995t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g16275t00001" CDS join(23185932..23185934,23186181..23186558, 23186728..23186943) /locus_tag="TCM_024202" /note="paralog of Thecc1EG025995t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08926.1" /translation="MNLFKQDAGNCLEAVAMRVALEWEREKTRVMKESLRDDELALLE KALEHSMLMGKKEETLAEIELQEKLIDDFMVFIGAVENNDVEIAQNFDEKAMMDAIVA MLNSEGNSGGNGEGLGGAYGKEKKKAGITILTSLLKEQGVTAVKAAKLVETAAVATVT AVSSVVGANGGSCDGDHRKLGHWLLVGNGELVFNDLFL" mobile_element 23193022..23206869 /note="source:CACAO_on_E565_scaffold_5 1 13848" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 23207720..23207800 /note="source:CACAO_M_E84995_F60_scaffold_10 7774 7853" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(23209117..>23210818) /locus_tag="TCM_024207" /note="dbxref CacaoGD:Thecc1EG024207" mRNA complement(join(23209117..23209519,23209677..23209772, 23210133..23210476,23210640..23210773)) /locus_tag="TCM_024207" /product="Uncharacterized protein isoform 1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc935t3; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc935t3" mRNA complement(join(23209621..23210476,23210640..>23210818)) /locus_tag="TCM_024207" /product="Uncharacterized protein isoform 2" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog weak, intron is medium, protein is partial5; similar to RNA sequence, EST 0.55 coverage; inference alignment:Newbler:10:TSA:cgbaB_g11435t00001; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc935t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1007t5" CDS complement(join(23209722..23209772,23210133..23210476, 23210640..23210730)) /locus_tag="TCM_024207" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY08927.1" /translation="MALLSFNPLPCLSSSPVSSCATSLPIAVSPISWVRPKAVDHPPS KCPIRTQVVPNKKRLLMTVKASAASTGGEPQPQPPSESKKEALPVEQLPLESESKAQQ MMEQKMRMKLAKKIRLRRKRLLRKRKMRKKGRWPPSKMKKLKNVFLQQWKLIHSSEIV G" CDS complement(join(23210127..23210476,23210640..>23210817)) /locus_tag="TCM_024207" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY08928.1" /translation="LFRWCVERKRAFIWLIQNQRTNVFASCKVMALLSFNPLPCLSSS PVSSCATSLPIAVSPISWVRPKAVDHPPSKCPIRTQVVPNKKRLLMTVKASAASTGGE PQPQPPSESKKEALPVEQLPLESESKAQQMMEQKMRMKLAKKIRLRRKRLLRKRKMRK KGRWPPSKMKKLKNV" mobile_element complement(23212906..23213034) /note="source:INTACT1818F_F49_scaffold_11-int 19972 20109" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23214022..23216295 /note="source:scaffold_3_CACTA_0382 9598 11876" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23217652..23217698) /note="source:CACAO_M_E58911_F33_scaffold_9 2405 2450" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23218061..23219431 /note="source:CACAO_M_E43916_F9_scaffold_5 6689 8056" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23219150..23219464) /note="source:CACAO_M_E22872_F73_scaffold_3 1493 1807" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23219565..23220523 /note="source:CACAO_M_S_E89558_F73_scaffold_8 1236 2189" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23220624..23221125 /note="source:CACAO_M_E44777_F73_scaffold_6 2217 2722" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23221029..23221144) /note="source:INTACT405F_F91_scaffold_4-int 4275 4391" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(23224333..23226271) /note="source:CACAO_M_E43672_F60_scaffold_5 18305 20189" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23226272..23226680) /note="source:CACAO_M_E589_F323_scaffold_1 3075 3465" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23227620..23228414 /note="source:CACAO_M_E12489_F323_scaffold_3 1319 2114" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23228850..23229151) /note="source:CACAO_M_E968_F323_scaffold_1 399 700" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23228894..23232517 /note="source:CACAO_M_E45167_F85_scaffold_6 2201 5810" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23232618..23233156 /note="source:CACAO_M_E4027_F323_scaffold_2 5366 5904" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23233257..23233915) /note="source:CACAO_M_E1763_F323_scaffold_1 2528 3185" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23233920..23234359) /note="source:CACAO_M_E52692_F323_scaffold_8 9 450" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23234347..23234624) /note="source:scaffold_6_CACTA_0702 10583 10851" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23234625..23245586 /note="source:INTACT717_F312_scaffold_5-int 1 10962" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23245587..23247982) /note="source:scaffold_6_CACTA_0702 8207 10584" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23247970..23248687) /note="source:CACAO_M_S_E7818_F60_scaffold_2 21002 21722" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23248638..23250136 /note="source:CACAO_M_S_E4787_F60_scaffold_1 3189 4686" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23250135..23250967) /note="source:CACAO_M_S_E32578_F60_scaffold_4 4298 5131" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23250968..23255193) /note="source:CACAO_M_S_E7105_F60_scaffold_2 2 4245" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23255832..23258379) /note="source:CACAO_M_S_E17000_F33_scaffold_3 386 2934" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23258369..23258516) /note="source:CACAO_M_E69460_F12_scaffold_9 15889 16030" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23259342..23262113 /note="source:CACAO_M_E43541_F15_scaffold_5 1 2757" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23265472..23267004 /note="source:scaffold_6_CACTA_0702 12995 14496" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23267307..23269845 /note="source:CACAO_M_E14113_F106_scaffold_3 7985 10512" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(23274210..23274275) /note="source:CACAO_M_E14113_F106_scaffold_3 13817 13882" /mobile_element_type="retrotransposon:LTR/Copia" gene 23274351..23285598 /locus_tag="TCM_024214" /note="dbxref CacaoGD:Thecc1EG024214" mRNA join(23274351..23275396,23276141..23276393, 23277184..23277994,23279305..23279477,23280433..23280517, 23281076..23281241,23281344..23281384,23281477..23281744, 23282000..23282123,23282783..23283143,23284646..23285598) /locus_tag="TCM_024214" /product="Endonuclease/exonuclease/phosphatase family protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT1G65580.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021544t7" /inference="similar to AA sequence:Phytozome:POPTR_0008s07870.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5061t3" mRNA join(23274581..23275324,23276141..23276393, 23277184..23277994,23279305..23279477,23280433..23280517, 23281076..23281384,23281477..23281744,23282000..23282123, 23282783..23283143,23284646..23285572) /locus_tag="TCM_024214" /product="Endonuclease/exonuclease/phosphatase family protein isoform 4" /inference="alignment:exonerate- protein:2:TAIR:AT1G65580.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021544t3" /inference="similar to AA sequence:Phytozome:POPTR_0008s07870.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1490t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5061t3" mRNA join(23274581..23275324,23276141..23276393, 23277184..23277994,23279305..23279477,23280433..23280517, 23281076..23281241,23281344..23281384,23281477..23281744, 23282000..23282123,23282783..23283143,23284646..23285572) /locus_tag="TCM_024214" /product="Endonuclease/exonuclease/phosphatase family protein isoform 3" /inference="alignment:exonerate- protein:2:TAIR:AT1G65580.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021544t7" /inference="similar to AA sequence:Phytozome:POPTR_0008s07870.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1490t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5061t3" mRNA join(23274585..23275390,23276141..23276393, 23277184..23277994,23279305..23279477,23280433..23280517, 23281076..23281241,23281344..23281384,23281477..23281744, 23282000..23282123,23282783..23283145,23284646..23285585) /locus_tag="TCM_024214" /product="Endonuclease/exonuclease/phosphatase family protein isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT1G65580.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021544t7" /inference="similar to AA sequence:Phytozome:POPTR_0008s07870.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5061t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5061t3" CDS join(23274751..23275396,23276141..23276393, 23277184..23277994,23279305..23279477,23280433..23280517, 23281076..23281241,23281344..23281384,23281477..23281744, 23282000..23282123,23282783..23283143,23284646..23285002) /locus_tag="TCM_024214" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG021544t7" /codon_start=1 /product="Endonuclease/exonuclease/phosphatase family protein isoform 1" /protein_id="EOY08929.1" /db_xref="Phytozome:POPTR_0008s07870.1" /db_xref="TAIR:AT1G65580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80560" /translation="MDANDDIPSPSPRIFDRYASSSDDDSQPSYPSLHSTNRRLDYMI QFLDRNLLPQHSSSPNAFLPEFVAKGGGQGIFTLPDRRALHPNRPPHLELRPHPLRET QFGRFLKTIATTDRQLWAGSESGAVRVWEFKDLYEEGEEEDAAPFRESSALSSNGNAA VTCMVGDEGNGLVWSGHRDGRIRGWKMDCESGGFKEWLSGQAHRGPVLSIIFTCYGDV WSGSEGGNIRIWPWEAIDNALSLTMEERHMASLLMERSFVDLRSQVAVNGFSSILNSD IKCLLSDNIRAKVWSAGYLSFALWDARTRELLKVVNIDGQIENRVELSLVPDFAMEDE IKMKIVTSSKKEKTQSSFGFFQQSRNAIMGAADAVRRVAAKGGFVDDSRRIEALTIAI DGMIWVGCANGLLIQWDGNGNRIQDFQHHPSAVLCLCSFGSQLWAGYASGTVQVLDLE GNRLGRWVAHSNSVLQMAIGAGYIYTLAKHGGIRGWNITSPGPLDSILRSELTAKGFL YTRIENLTILTGTWNVGQGRASMGSLETWLHSAVSDVGIIVIGLQEVEMGAGFLAMSA VRETVGRDGSAVGQWWLDLIDETLRDMMERKSQDMMGKKLHERKMYERVGSRQLASML IAVWVEGNLKPHVGDIDAAAVPCGFGRAIGNKGAVGLRLRVYDRIFCFVNCHFAAHLE AVGRRNADFDHVYRTMTFSRPSNVFNTAAAGASSAVQMLRGANAMGAHSVEAMPELSE ADMVVFLGDFNYRLDGVSYDEARDFISQRSFDWLRERDQLRAEMEAGNVFQGMREAVI TFAPTYKFDKHIAGLSGYDSGEKKRIPAWCDRILYRDSRRTLGSECSLDSPVVSSVSQ YESCMDVTDSDHKPVICIFSVEIARIDESVRRQEFGDVMRSNEEIRCKIEELYKIPET IVSTNNIILQNQDTSILRITNKCVESNALFEIVCQGESTIKDDGQASDHHPRGSFGFP LWLQVTPAAGIIKPDHVAEVSVHIEAFHTQEEFVDGFPQNWWCEDNRDKEAILVVKVH GRYATETRNHRIRVRHCSSAKMKKKDPKPNDSPQIQGNLLHRADYQRLSVSYDVVDHL RNLHSP" CDS join(23274751..23275324,23276141..23276393, 23277184..23277994,23279305..23279477,23280433..23280517, 23281076..23281384,23281477..23281744,23282000..23282123, 23282783..23283143,23284646..23285002) /locus_tag="TCM_024214" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG021544t3" /codon_start=1 /product="Endonuclease/exonuclease/phosphatase family protein isoform 4" /protein_id="EOY08932.1" /db_xref="Phytozome:POPTR_0008s07870.1" /db_xref="TAIR:AT1G65580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80560" /translation="MDANDDIPSPSPRIFDRYASSSDDDSQPSYPSLHSTNRRLDYMI QFLDRNLLPQHSSSPNAFLPEFVAKGGGQGIFTLPDRRALHPNRPPHLELRPHPLRET QFGRFLKTIATTDRQLWAGSESGAVRVWEFKDLYEEGEEEDAAPFRESSALSSNGNAA VTCMVGDEGNGLVWSGHRDGRIRGWKMDCESGDVWSGSEGGNIRIWPWEAIDNALSLT MEERHMASLLMERSFVDLRSQVAVNGFSSILNSDIKCLLSDNIRAKVWSAGYLSFALW DARTRELLKVVNIDGQIENRVELSLVPDFAMEDEIKMKIVTSSKKEKTQSSFGFFQQS RNAIMGAADAVRRVAAKGGFVDDSRRIEALTIAIDGMIWVGCANGLLIQWDGNGNRIQ DFQHHPSAVLCLCSFGSQLWAGYASGTVQVLDLEGNRLGRWVAHSNSVLQMAIGAGYI YTLAKHGGIRGWNITSPGPLDSILRSELTAKGFLYTRIENLTILTGTWNVGQGRASMG SLETWLHSAVSDVGIIVIGLQEVEMGAGFLAMSAVRETVGRDGSAVGQWWLDLIDETL RDMMERKSQDMMGKKLHERKMYERVGSRQLASMLIAVWVEGNLKPHVGDIDAAAVPCG FGRAIGNKGAVGLRLRVYDRIFCFVNCHFAAHLEAVGRRNADFDHVYRTMTFSRPSNV FNTAAGMALYLFLPCILACSMYLFWLVYRSSLPLVLSIAAGASSAVQMLRGANAMGAH SVEAMPELSEADMVVFLGDFNYRLDGVSYDEARDFISQRSFDWLRERDQLRAEMEAGN VFQGMREAVITFAPTYKFDKHIAGLSGYDSGEKKRIPAWCDRILYRDSRRTLGSECSL DSPVVSSVSQYESCMDVTDSDHKPVICIFSVEIARIDESVRRQEFGDVMRSNEEIRCK IEELYKIPETIVSTNNIILQNQDTSILRITNKCVESNALFEIVCQGESTIKDDGQASD HHPRGSFGFPLWLQVTPAAGIIKPDHVAEVSVHIEAFHTQEEFVDGFPQNWWCEDNRD KEAILVVKVHGRYATETRNHRIRVRHCSSAKMKKKDPKPNDSPQIQGNLLHRADYQRL SVSYDVVDHLRNLHSP" CDS join(23274751..23275324,23276141..23276393, 23277184..23277994,23279305..23279477,23280433..23280517, 23281076..23281241,23281344..23281384,23281477..23281744, 23282000..23282123,23282783..23283143,23284646..23285002) /locus_tag="TCM_024214" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG021544t7" /codon_start=1 /product="Endonuclease/exonuclease/phosphatase family protein isoform 3" /protein_id="EOY08931.1" /db_xref="Phytozome:POPTR_0008s07870.1" /db_xref="TAIR:AT1G65580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80560" /translation="MDANDDIPSPSPRIFDRYASSSDDDSQPSYPSLHSTNRRLDYMI QFLDRNLLPQHSSSPNAFLPEFVAKGGGQGIFTLPDRRALHPNRPPHLELRPHPLRET QFGRFLKTIATTDRQLWAGSESGAVRVWEFKDLYEEGEEEDAAPFRESSALSSNGNAA VTCMVGDEGNGLVWSGHRDGRIRGWKMDCESGDVWSGSEGGNIRIWPWEAIDNALSLT MEERHMASLLMERSFVDLRSQVAVNGFSSILNSDIKCLLSDNIRAKVWSAGYLSFALW DARTRELLKVVNIDGQIENRVELSLVPDFAMEDEIKMKIVTSSKKEKTQSSFGFFQQS RNAIMGAADAVRRVAAKGGFVDDSRRIEALTIAIDGMIWVGCANGLLIQWDGNGNRIQ DFQHHPSAVLCLCSFGSQLWAGYASGTVQVLDLEGNRLGRWVAHSNSVLQMAIGAGYI YTLAKHGGIRGWNITSPGPLDSILRSELTAKGFLYTRIENLTILTGTWNVGQGRASMG SLETWLHSAVSDVGIIVIGLQEVEMGAGFLAMSAVRETVGRDGSAVGQWWLDLIDETL RDMMERKSQDMMGKKLHERKMYERVGSRQLASMLIAVWVEGNLKPHVGDIDAAAVPCG FGRAIGNKGAVGLRLRVYDRIFCFVNCHFAAHLEAVGRRNADFDHVYRTMTFSRPSNV FNTAAAGASSAVQMLRGANAMGAHSVEAMPELSEADMVVFLGDFNYRLDGVSYDEARD FISQRSFDWLRERDQLRAEMEAGNVFQGMREAVITFAPTYKFDKHIAGLSGYDSGEKK RIPAWCDRILYRDSRRTLGSECSLDSPVVSSVSQYESCMDVTDSDHKPVICIFSVEIA RIDESVRRQEFGDVMRSNEEIRCKIEELYKIPETIVSTNNIILQNQDTSILRITNKCV ESNALFEIVCQGESTIKDDGQASDHHPRGSFGFPLWLQVTPAAGIIKPDHVAEVSVHI EAFHTQEEFVDGFPQNWWCEDNRDKEAILVVKVHGRYATETRNHRIRVRHCSSAKMKK KDPKPNDSPQIQGNLLHRADYQRLSVSYDVVDHLRNLHSP" CDS join(23274751..23275390,23276141..23276393, 23277184..23277994,23279305..23279477,23280433..23280517, 23281076..23281241,23281344..23281384,23281477..23281744, 23282000..23282123,23282783..23283145,23284646..23284667) /locus_tag="TCM_024214" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG021544t7" /codon_start=1 /product="Endonuclease/exonuclease/phosphatase family protein isoform 2" /protein_id="EOY08930.1" /db_xref="Phytozome:POPTR_0008s07870.1" /db_xref="TAIR:AT1G65580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80560" /translation="MDANDDIPSPSPRIFDRYASSSDDDSQPSYPSLHSTNRRLDYMI QFLDRNLLPQHSSSPNAFLPEFVAKGGGQGIFTLPDRRALHPNRPPHLELRPHPLRET QFGRFLKTIATTDRQLWAGSESGAVRVWEFKDLYEEGEEEDAAPFRESSALSSNGNAA VTCMVGDEGNGLVWSGHRDGRIRGWKMDCESGGFKEWLSGQAHRGPVLSIIFTWDVWS GSEGGNIRIWPWEAIDNALSLTMEERHMASLLMERSFVDLRSQVAVNGFSSILNSDIK CLLSDNIRAKVWSAGYLSFALWDARTRELLKVVNIDGQIENRVELSLVPDFAMEDEIK MKIVTSSKKEKTQSSFGFFQQSRNAIMGAADAVRRVAAKGGFVDDSRRIEALTIAIDG MIWVGCANGLLIQWDGNGNRIQDFQHHPSAVLCLCSFGSQLWAGYASGTVQVLDLEGN RLGRWVAHSNSVLQMAIGAGYIYTLAKHGGIRGWNITSPGPLDSILRSELTAKGFLYT RIENLTILTGTWNVGQGRASMGSLETWLHSAVSDVGIIVIGLQEVEMGAGFLAMSAVR ETVGRDGSAVGQWWLDLIDETLRDMMERKSQDMMGKKLHERKMYERVGSRQLASMLIA VWVEGNLKPHVGDIDAAAVPCGFGRAIGNKGAVGLRLRVYDRIFCFVNCHFAAHLEAV GRRNADFDHVYRTMTFSRPSNVFNTAAAGASSAVQMLRGANAMGAHSVEAMPELSEAD MVVFLGDFNYRLDGVSYDEARDFISQRSFDWLRERDQLRAEMEAGNVFQGMREAVITF APTYKFDKHIAGLSGYDSGEKKRIPAWCDRILYRDSRRTLGSECSLDSPVVSSVSQYE SCMDVTDSDHKPVICIFSVEIARIDESVRRQEFGDVMRSNEEIRCKIEELYKIPETIV STNNIILQNQDTSILRITNKCVESNALFEIVCQGESTIKDDGQASDHHPRGSFGFPLW LQVLLQPLV" mobile_element complement(23290867..23293819) /note="source:CACAO_M_S_E122136_F76_scaffold_10 1323 4280" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23299112..23300112) /note="source:INTACT95_F143_scaffold_9-int 6398 7403" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23300111..23300654) /note="source:CACAO_M_E57691_F15_scaffold_9 2418 2963" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23302886..23304888) /note="source:CACAO_M_E9677_F7_scaffold_2 9865 11853" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23314255..23314592 /note="source:INTACT189_F49_scaffold_5-int 14293 14720" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23315257..23318200 /note="source:CACAO_M_E43772_F246_scaffold_5 1 2947" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23318240..23319420 /note="source:INTACT189_F49_scaffold_5-int 15657 16971" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23320916..23321853) /note="source:CACAO_M_E22786_F85_scaffold_3 2369 3305" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23323466..23324210) /note="source:CACAO_M_S_E38262_F319_scaffold_4 3021 3767" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23324250..23324463 /note="source:CACAO_M_E69236_F12_scaffold_9 768 994" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23327516..23327564 /note="source:CACAO_M_E71542_F85_scaffold_10 4402 4448" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(23327700..23330524) /locus_tag="TCM_024217" /note="dbxref CacaoGD:Thecc1EG024217" mRNA complement(join(23327700..23327725,23329085..23329783, 23330234..23330524)) /locus_tag="TCM_024217" /product="Lateral organ boundaries domain family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s07930.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000560t1" /inference="similar to AA sequence:Phytozome:GSVIVT01006269001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5034t1" CDS complement(23329118..23329768) /locus_tag="TCM_024217" /note="paralog of Thecc1EG000560t1" /codon_start=1 /product="Lateral organ boundaries domain family protein" /protein_id="EOY08933.1" /db_xref="Phytozome:GSVIVT01006269001" /db_xref="TAIR:AT1G65620.4" /db_xref="UniProtKB/TrEMBL:UniRef50_O04479" /translation="MASSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVF GASNVTKLLNELHPSQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQMDLS CAKSELSKYQSLGITGHAGLIAAAAAAATATANTHQNLGINLIGSGGGGGREHHYHHQ FFPRDHQQQMIRSFDAGSNYDASLLAMNVSAGIGQLSQYQQPRAAAGDDRRTIDPS" mobile_element complement(23336454..23339650) /note="source:CACAO_M_E50577_F82_scaffold_7 1 3309" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23339651..23339662) /note="source:CACAO_M_E42514_F40_scaffold_5 17365 17467" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 23343224..23346079 /note="source:CACAO_M_E43554_F15_scaffold_5 1 2824" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23350396..23350563 /note="source:CACAO_M_E47740_F12_scaffold_6 774 941" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23350477..23350598 /note="source:scaffold_2_CACTA_0262 1 122" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23350600..23353590) /note="source:CACAO_M_S_E1446_F7_scaffold_1 1 3026" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23356976..23357601 /note="source:scaffold_2_CACTA_0260 3897 4513" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23357759..23358869) /note="source:CACAO_M_E58601_F7_scaffold_9 4486 5673" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23358759..23358877 /note="source:CACAO_M_E4631_F369_scaffold_2 9216 9317" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23358814..23358882) /note="source:scaffold_4_CACTA_0497 1196 1267" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23359009..23360155) /note="source:scaffold_2_CACTA_0261 1782 2877" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23360320..23360824) /note="source:scaffold_2_CACTA_0260 6 510" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23361284..23361672 /note="source:CACAO_M_E58601_F7_scaffold_9 9544 9946" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23362903..23362968 /note="source:CACAO_M_E85491_F369_scaffold_11 1287 1354" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23365764..23365850 /note="source:scaffold_2_CACTA_0262 629 733" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23367186..23367798 /note="source:scaffold_2_CACTA_0260 3897 4513" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23371520..23371601 /note="source:INTACT135F_F90_scaffold_2-int 16231 16311" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(23371528..23371607) /note="source:INTACT118_F5_scaffold_9-int 1034 1115" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23371593..23372843 /note="source:INTACT741_F17_scaffold_3-int 8127 9361" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23372834..23376931 /note="source:INTACT741_F17_scaffold_3-int 1554 5608" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23376934..23378345 /note="source:CACAO_M_E3326_F17_scaffold_1 5725 7140" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23378369..23381111 /note="source:CACAO_M_E43564_F369_scaffold_5 1 2743" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23381448..23381542 /note="source:INTACT591_F264_scaffold_1-int 5586 5672" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23381572..23385083 /note="source:INTACT741_F17_scaffold_3-int 4998 8454" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23385074..23386234 /note="source:INTACT528_F17_scaffold_6-int 358 1538" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(23398147..23400685) /locus_tag="TCM_024222" /note="dbxref CacaoGD:Thecc1EG024222" mRNA complement(join(23398147..23398518,23398626..23398664, 23398826..23398882,23398969..23399117,23399392..23399459, 23400541..23400685)) /locus_tag="TCM_024222" /product="Basic transcription factor 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029373001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024196t2" /inference="similar to AA sequence:frave:gene08977" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00030t00009" CDS complement(join(23398346..23398518,23398626..23398664, 23398826..23398882,23398969..23399117,23399392..23399459)) /locus_tag="TCM_024222" /note="dbxref frave:gene08977; paralog of Thecc1EG024196t2" /codon_start=1 /product="Basic transcription factor 3" /protein_id="EOY08934.1" /db_xref="TAIR:AT1G17880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93ZB5" /translation="MNVEKLMKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLK RIGVNAIPAIEEVNIFKDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPGIIN QLGPDNLDNLRKLAEQFQKQVPTAGAEATATQEEDDDDVPQLVGGETFEAAAEEGQAA K" gene 23403100..23416224 /locus_tag="TCM_024223" /note="dbxref CacaoGD:Thecc1EG024223" mRNA join(23403100..23403385,23403484..23404145, 23416202..23416224) /locus_tag="TCM_024223" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is medium, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.33 coverage" CDS join(23403347..23403385,23403484..23403711) /locus_tag="TCM_024223" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08935.1" /translation="MGRMGTFAQLIPMPIYKRGKDGTSRLELITTQSWEVETFSIHFT TQSWECKDLLNPHHNTNHGNVETFLIHIHNTHMQKQFNQPQSSS" mobile_element complement(23404208..23406320) /note="source:INTACT170_F12_scaffold_5-int 4737 6823" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23406239..23406332 /note="source:scaffold_2_CACTA_0262 13544 13623" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23406256..23406334) /note="source:scaffold_2_CACTA_0262 6267 6345" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23406344..23406973) /note="source:INTACT170_F12_scaffold_5-int 1173 1800" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23415960..23416915) /note="source:CACAO_M_S_E84822_F86_scaffold_7 3530 4485" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23416915..23417572 /note="source:INTACT543_F86_scaffold_5-int 7481 8137" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23418443..23418827 /note="source:CACAO_M_E14957_F86_scaffold_3 2361 2745" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23421309..23421374) /note="source:CACAO_M_S_E1495_F60_scaffold_1 12147 12209" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23421724..23422880) /note="source:CACAO_M_E58601_F7_scaffold_9 4508 5672" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23422982..23423054 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3208 3281" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23423991..23424863 /note="source:INTACT695_F301_scaffold_5-int 3565 4459" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23424864..23425542) /note="source:CACAO_M_S_E1495_F60_scaffold_1 11262 11911" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23425558..23425666) /note="source:CACAO_M_S_E1495_F60_scaffold_1 16573 16684" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23425667..23432293 /note="source:INTACT657_F288_scaffold_5-int 1 6581" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23433175..23433289 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3168 3292" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23433266..23436746 /note="source:INTACT657_F288_scaffold_5-int 6644 10151" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23436747..23437077) /note="source:CACAO_M_S_E1495_F60_scaffold_1 16252 16577" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23437108..23437833 /note="source:CACAO_M_S_E1495_F60_scaffold_1 435 1146" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23437864..23437926) /note="source:CACAO_M_E5627_F4_scaffold_2 553 615" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 23437947..23438801 /note="source:CACAO_M_S_E1495_F60_scaffold_1 903 1752" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23438802..23443819) /note="source:INTACT741_F17_scaffold_3-int 4635 9663" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23443828..23443861) /note="source:scaffold_2_CACTA_0260 503 536" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23443832..23444182) /note="source:INTACT465_F78_scaffold_6-int 12826 13180" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23445550..23446763) /note="source:CACAO_M_S_E31635_F14_scaffold_3 1733 3001" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23446909..23449820) /note="source:CACAO_M_E3326_F17_scaffold_1 4085 7062" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23449821..23452823 /note="source:CACAO_M_E43582_F277_scaffold_5 1 3003" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23452824..23452899 /note="source:CACAO_M_E85923_F17_scaffold_12 10465 10540" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23452885..23454810 /note="source:INTACT465_F78_scaffold_6-int 4488 6417" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23454790..23455311 /note="source:scaffold_5_CACTA_0601 5689 6211" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23454882..23459994) /note="source:CACAO_M_E42630_F86_scaffold_5 1820 6946" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23459991..23460970 /note="source:scaffold_5_CACTA_0601 1719 2714" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23460972..23465412) /note="source:CACAO_M_E14957_F86_scaffold_3 1230 5660" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23462164..23478910 /note="source:scaffold_5_CACTA_0601 1 16747" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23491129..23491275) /note="source:CACAO_M_E58324_F9_scaffold_9 1747 1892" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23491832..23494837 /note="source:CACAO_M_E43592_F15_scaffold_5 1 2978" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23495178..23497752 /note="source:CACAO_M_E58324_F9_scaffold_9 7667 10222" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23502434..23503041) /note="source:CACAO_M_E5899_F5_scaffold_2 21994 22699" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23504038..23505013) /note="source:scaffold_4_CACTA_0494 1798 2745" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23505067..23505116) /note="source:CACAO_M_E5899_F5_scaffold_2 20738 20788" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23505182..23505260) /note="source:scaffold_4_CACTA_0494 1548 1626" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23507248..23509099 /note="source:INTACT167_F5_scaffold_2-int 3834 5691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23509877..23510096) /note="source:scaffold_9_CACTA_0931 256 425" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23510035..23510112) /note="source:CACAO_M_E70891_F369_scaffold_10 2627 2703" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23510147..23512532 /note="source:CACAO_M_E14312_F12_scaffold_3 19828 22223" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23512532..23512846 /note="source:CACAO_M_S_E14847_F12_scaffold_2 12889 13203" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23515225..23515953 /note="source:INTACT296_F13_scaffold_9-int 13744 14469" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23517025..23517106) /note="source:INTACT1332F_F13_scaffold_8-int 14688 14769" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23517297..23517927) /note="source:scaffold_5_CACTA_0601 8100 8728" /mobile_element_type="transposon:TIR/CACTA" gene complement(23520093..23539871) /locus_tag="TCM_024228" /note="dbxref CacaoGD:Thecc1EG024228" mRNA complement(join(23520093..23521157,23522562..23522930, 23523218..23524322,23525371..23525666,23526840..23526918, 23527043..23527130,23528675..23528822,23528904..23529171, 23529392..23530762,23531119..23531388,23532091..23532325, 23533227..23533286,23533731..23534060,23534204..23534282, 23534388..23534467,23534575..23534652,23537285..23537365, 23537448..23537535,23537746..23537832,23537954..23538093, 23538235..23538308,23539367..23539871)) /locus_tag="TCM_024228" /product="RNA polymerase II transcription mediators isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT1G55325.2" /inference="similar to AA sequence:Phytozome:GSVIVT01025465001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc722t11" mRNA complement(join(23520103..23521157,23522562..23524322, 23525371..23525666,23526840..23526918,23527043..23527130, 23528675..23528822,23528904..23529171,23529392..23530762, 23531119..23531388,23532091..23532325,23533227..23533286, 23533731..23534060,23534204..23534282)) /locus_tag="TCM_024228" /product="RNA polymerase II transcription mediators isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT1G55325.2" /inference="similar to AA sequence:Phytozome:GSVIVT01025465001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc715t5; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc722t11" mRNA complement(join(23520206..23521157,23522562..23522930, 23523218..23524322,23525371..23525666,23526840..23526918, 23527043..23527130,23528675..23528822,23528904..23529171, 23529392..23530762,23531119..23531388,23532091..23532325, 23532692..23533099)) /locus_tag="TCM_024228" /product="RNA polymerase II transcription mediators isoform 3" /inference="alignment:exonerate- protein:2:TAIR:AT1G55325.2" /inference="similar to AA sequence:Phytozome:POPTR_0003s21030.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5231t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc722t11" CDS complement(join(23520550..23521157,23522562..23522930, 23523218..23524322,23525371..23525666,23526840..23526918, 23527043..23527130,23528675..23528822,23528904..23529171, 23529392..23530762,23531119..23531388,23532091..23532325, 23533227..23533286,23533731..23534060,23534204..23534282, 23534388..23534467,23534575..23534652,23537285..23537365, 23537448..23537535,23537746..23537832,23537954..23538093, 23538235..23538308,23539367..23539390)) /locus_tag="TCM_024228" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="RNA polymerase II transcription mediators isoform 1" /protein_id="EOY08936.1" /db_xref="Phytozome:GSVIVT01025465001" /db_xref="TAIR:AT1G55325.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GUN3" /translation="MWTNVFRIGGLSQISWFQFLPVESDLNSLPDKSIKAEQKDAATL LVLSSHLQLQKEGFLSTWTNSFVGPWDPSQGLHNPDEKIKLWLFIPGRHVSVQESAQS AVSRLRVVASGLWLAPGDSEEVAAALSQALRNHIERALHGFSYMRFGDVFSKYHPPQI EECFRRAQPTVEFIFAATQESIFVHTIISSKHIRALSTSDIEKVLEHSSKNSSYLLPV IISPHGMRGRLSGCSPNDLVKQVYFSGSGKIRTFNGFIGLPYHPSQGSGCQLWGQNCY VKVTLGCSKSGSDKALNSNANIRNLPKHHPTEASAAGRDDQKGSLDLLSVLEKTFIYP SEAVLVPVLQTSFARSSLRRFWLQNWIGPSLAASSLLRHCDGNIDSMERSWVEFSGIH TQHCYNSSSNSNNSSISSISSSSSDSVTTGARDLEADADSSCRQSGLSSNDQMEIDCL KMGSKRPRIGITESYGQAITVTNASSQDAYKSNIGSMEVNHSAITAVGNDQIGSNWDW DDDDRGIVMDIQSLLSEFGDFGDFFENDVLPFGEPPGTAESSAIMFAAPDCGDAGSSP AGVMDVSDQMLLPVCLPSFDSFTPHPPVAIEECLSKSQEVTSSAVTSGPLNHTLASST GEFDHLMKAEALMTFATEYGAVETPASDSSSIFKKPYLPKSHKAESSNSSPNNYIYGA TPPSSPCFDGLDEKTGMPMNLKAYPGGHDLSATYQLKKYYTPVETRKERYDGKLLTHN DSSVTNEVSGTSQFANFNSMNAVKSADRKMTQGICGKEHILLSMKTVLATDVECAMFQ ASMLRMRHILLSPMSLATISLSRPAGRSVLNHLPGDPSSMTDNVSSRYEVKKKESIPV RIAGDIDGGMLDGHLNAPVGVWRTVGVPKVSKPAASPSIEASPSLTHNSFNEDSILSY GQRQPLQELLDGIVLLVQQATSFVDLVLDADCGDGPYSWLALQEHWRRGFCCGPSMVH AGCGGTLASCHSLDIAGVELVDPLSANIHASSVISLLHSDIKSALKSAFGNLDGPLSV TDWCKGRGQSGDVGASADGSSAESNTNECRDSSTTVTHSVGEAMSPSQTSVGGSSVLK VTGALDGGKVEETSQRRLNQEISGSESEQQQCTRLRPTLFVLPSPAILVGYQDDWLKT SANSLQLWEKAPLEPYALPKPIIYSVICPDIDPLTSAAADFFQQLGTVYETCKLGTHS PQSLGNQMEMDSGKWSSSGFVLLDCPQSMKIESSNASLLGSISDYFLSLSNGWDLACY LKSLSKALKALKLSQFLSTNQKEGISGPCMVIYVVCPFPEPTAVLKTVVESSIAIGSI ILPSDRERRSVLYSQVGKALSSSAAADEASISNIPVVSGFSVPKLVLQIVTVDAIFRV TSPPFNELVILKETAFTIYNKARRISRGSTNDVSLSSSLSSRPHSVLTPMTSIPGMWK DCVGSRIPGSSLPREGEIDSSLRGGAWDNSWQTSRAGGLSCDPNRNGDFFYQDEVCYM FEPLFILAESGSVEHGISPTAFGNSTSETSKTVSDESSGAFMQTANSAGSIDPGSGSQ LDGSESDGVSSGNNKTPSLHCCYGWTEDWRWLVCIWTDARGELLDCDIFPFGGISSRQ DTKGLQCLFVQVLQQGCQILQTCASPDTGVVKPRDFVITRIGNFYELEYLEWQKAIYL VGGSEVKKWPLQLRRSVPDGMPTSTNGTSLQQQEMSLIQDRTLPSSPSPLYSPHTKAG FMKGGLGQPAARKQLMGGHTLVDSCRGLLQWVQSISFVSVSVDHSLQLVFQADSLSPG TQGVSGMGQSGYTEGFTPVKSLGSTSASYMLIPSPSMRFLPPTPLQLPICLTAESPPL AHLLHSKGSAIPLSTGFVVSKAVPSVRKDCRNYTKDEWPSVLSVSLIDYCGGNNVSQD KVIRGIAKPAGRTLISEARDFEIDNHLILKSVAAELHALSWMTVSPGYLERRTALPFH CDMVLRLRRLLHFAEKELSRPPDKTQV" CDS complement(join(23520550..23521157,23522562..23522930, 23523218..23524322,23525371..23525666,23526840..23526918, 23527043..23527130,23528675..23528822,23528904..23529171, 23529392..23530762,23531119..23531388,23532091..23532306)) /locus_tag="TCM_024228" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="RNA polymerase II transcription mediators isoform 3" /protein_id="EOY08938.1" /db_xref="Phytozome:POPTR_0003s21030.1" /db_xref="TAIR:AT1G55325.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GUN3" /translation="MERSWVEFSGIHTQHCYNSSSNSNNSSISSISSSSSDSVTTGAR DLEADADSSCRQSGLSSNDQMEIDCLKMGSKRPRIGITESYGQAITVTNASSQDAYKS NIGSMEVNHSAITAVGNDQIGSNWDWDDDDRGIVMDIQSLLSEFGDFGDFFENDVLPF GEPPGTAESSAIMFAAPDCGDAGSSPAGVMDVSDQMLLPVCLPSFDSFTPHPPVAIEE CLSKSQEVTSSAVTSGPLNHTLASSTGEFDHLMKAEALMTFATEYGAVETPASDSSSI FKKPYLPKSHKAESSNSSPNNYIYGATPPSSPCFDGLDEKTGMPMNLKAYPGGHDLSA TYQLKKYYTPVETRKERYDGKLLTHNDSSVTNEVSGTSQFANFNSMNAVKSADRKMTQ GICGKEHILLSMKTVLATDVECAMFQASMLRMRHILLSPMSLATISLSRPAGRSVLNH LPGDPSSMTDNVSSRYEVKKKESIPVRIAGDIDGGMLDGHLNAPVGVWRTVGVPKVSK PAASPSIEASPSLTHNSFNEDSILSYGQRQPLQELLDGIVLLVQQATSFVDLVLDADC GDGPYSWLALQEHWRRGFCCGPSMVHAGCGGTLASCHSLDIAGVELVDPLSANIHASS VISLLHSDIKSALKSAFGNLDGPLSVTDWCKGRGQSGDVGASADGSSAESNTNECRDS STTVTHSVGEAMSPSQTSVGGSSVLKVTGALDGGKVEETSQRRLNQEISGSESEQQQC TRLRPTLFVLPSPAILVGYQDDWLKTSANSLQLWEKAPLEPYALPKPIIYSVICPDID PLTSAAADFFQQLGTVYETCKLGTHSPQSLGNQMEMDSGKWSSSGFVLLDCPQSMKIE SSNASLLGSISDYFLSLSNGWDLACYLKSLSKALKALKLSQFLSTNQKEGISGPCMVI YVVCPFPEPTAVLKTVVESSIAIGSIILPSDRERRSVLYSQVGKALSSSAAADEASIS NIPVVSGFSVPKLVLQIVTVDAIFRVTSPPFNELVILKETAFTIYNKARRISRGSTND VSLSSSLSSRPHSVLTPMTSIPGMWKDCVGSRIPGSSLPREGEIDSSLRGGAWDNSWQ TSRAGGLSCDPNRNGDFFYQDEVCYMFEPLFILAESGSVEHGISPTAFGNSTSETSKT VSDESSGAFMQTANSAGSIDPGSGSQLDGSESDGVSSGNNKTPSLHCCYGWTEDWRWL VCIWTDARGELLDCDIFPFGGISSRQDTKGLQCLFVQVLQQGCQILQTCASPDTGVVK PRDFVITRIGNFYELEYLEWQKAIYLVGGSEVKKWPLQLRRSVPDGMPTSTNGTSLQQ QEMSLIQDRTLPSSPSPLYSPHTKAGFMKGGLGQPAARKQLMGGHTLVDSCRGLLQWV QSISFVSVSVDHSLQLVFQADSLSPGTQGVSGMGQSGYTEGFTPVKSLGSTSASYMLI PSPSMRFLPPTPLQLPICLTAESPPLAHLLHSKGSAIPLSTGFVVSKAVPSVRKDCRN YTKDEWPSVLSVSLIDYCGGNNVSQDKVIRGIAKPAGRTLISEARDFEIDNHLILKSV AAELHALSWMTVSPGYLERRTALPFHCDMVLRLRRLLHFAEKELSRPPDKTQV" CDS complement(join(23523048..23524322,23525371..23525666, 23526840..23526918,23527043..23527130,23528675..23528822, 23528904..23529171,23529392..23530762,23531119..23531388, 23532091..23532325,23533227..23533286,23533731..23534060, 23534204..23534262)) /locus_tag="TCM_024228" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="RNA polymerase II transcription mediators isoform 2" /protein_id="EOY08937.1" /db_xref="Phytozome:GSVIVT01025465001" /db_xref="TAIR:AT1G55325.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GUN3" /translation="MRGRLSGCSPNDLVKQVYFSGSGKIRTFNGFIGLPYHPSQGSGC QLWGQNCYVKVTLGCSKSGSDKALNSNANIRNLPKHHPTEASAAGRDDQKGSLDLLSV LEKTFIYPSEAVLVPVLQTSFARSSLRRFWLQNWIGPSLAASSLLRHCDGNIDSMERS WVEFSGIHTQHCYNSSSNSNNSSISSISSSSSDSVTTGARDLEADADSSCRQSGLSSN DQMEIDCLKMGSKRPRIGITESYGQAITVTNASSQDAYKSNIGSMEVNHSAITAVGND QIGSNWDWDDDDRGIVMDIQSLLSEFGDFGDFFENDVLPFGEPPGTAESSAIMFAAPD CGDAGSSPAGVMDVSDQMLLPVCLPSFDSFTPHPPVAIEECLSKSQEVTSSAVTSGPL NHTLASSTGEFDHLMKAEALMTFATEYGAVETPASDSSSIFKKPYLPKSHKAESSNSS PNNYIYGATPPSSPCFDGLDEKTGMPMNLKAYPGGHDLSATYQLKKYYTPVETRKERY DGKLLTHNDSSVTNEVSGTSQFANFNSMNAVKSADRKMTQGICGKEHILLSMKTVLAT DVECAMFQASMLRMRHILLSPMSLATISLSRPAGRSVLNHLPGDPSSMTDNVSSRYEV KKKESIPVRIAGDIDGGMLDGHLNAPVGVWRTVGVPKVSKPAASPSIEASPSLTHNSF NEDSILSYGQRQPLQELLDGIVLLVQQATSFVDLVLDADCGDGPYSWLALQEHWRRGF CCGPSMVHAGCGGTLASCHSLDIAGVELVDPLSANIHASSVISLLHSDIKSALKSAFG NLDGPLSVTDWCKGRGQSGDVGASADGSSAESNTNECRDSSTTVTHSVGEAMSPSQTS VGGSSVLKVTGALDGGKVEETSQRRLNQEISGSESEQQQCTRLRPTLFVLPSPAILVG YQDDWLKTSANSLQLWEKAPLEPYALPKPIIYSVICPDIDPLTSAAADFFQQLGTVYE TCKLGTHSPQSLGNQMEMDSGKWSSSGFVLLDCPQSMKIESSNASLLGSISDYFLSLS NGWDLACYLKSLSKALKALKLSQFLSTNQKEGISGPCMVIYVVCPFPEPTAVLKTVVE SSIAIGSIILPSDRERRSVLYSQVGKALSSSAAADEASISNIPVVSGFSVPKLVLQIV TVDAIFRVTSPPFNELVILKETAFTIYNKARRISRGSTNDVSLSSSLSSRPHSVLTPM TSIPGMWKDCVGSRIPGSSLPREGEIDSSLRGGAWDNSWQTSRAGGLSCDPNRNGDFF YQDEVCYMFEPLFILAESGSVEHGISPTAFGNSTSETSKTVSDESSGAFMQTANSAGS IDPGSGSQLDGSESDGVSSGNNKTPSLHCCYGWTEDWRWLVCIWTDARGELLDCDIFP FGGISSRQDTKGLQCLFVQVLQQGCQILQTCASPDTGVVKPRDFVITRIGNFYELEYL GISVCSFCDSLHFIFLLVRKLLSIALLQFCLSVTVTCCVLQYKLCFSFYVVLFLQL" mobile_element 23545876..23549196 /note="source:CACAO_M_E43608_F207_scaffold_5 1 3321" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23552765..23552831 /note="source:CACAO_M_E3884_F22_scaffold_1 13219 13284" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23565994..23569007 /note="source:INTACT1820F_F94_scaffold_12-int 367 3093" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23567272..23572242) /note="source:INTACT414F_F358_scaffold_4-int 2975 7947" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23569003..23575218 /note="source:CACAO_M_E3884_F22_scaffold_1 11547 19512" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23577348..23577743) /note="source:CACAO_M_E58324_F9_scaffold_9 1052 1447" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23577666..23577757) /note="source:scaffold_8_CACTA_0859 17846 17937" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23577840..23578655 /note="source:CACAO_M_E3884_F22_scaffold_1 1 781" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23578656..23589939 /note="source:INTACT51F_F15_scaffold_1-int 1 11259" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23589940..23590309 /note="source:INTACT126_F14_scaffold_3-int 15767 16139" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23590609..23592174 /note="source:CACAO_M_E58324_F9_scaffold_9 1074 2652" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 23596122..23600536 /locus_tag="TCM_024230" /note="dbxref CacaoGD:Thecc1EG024230" mRNA join(23596122..23596189,23598665..23598918, 23600469..23600536) /locus_tag="TCM_024230" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(23598692..23598918,23600469..23600487) /locus_tag="TCM_024230" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08939.1" /translation="MFEENYPHGPLEASLVARSDRDDVVFLEYVNYLDVSSRVLRIPF ESLDFSTSSLLVKPSIEAPLTLDHKSLPSHLSPNLEP" mobile_element complement(23600461..23601019) /note="source:CACAO_M_E3248_F5_scaffold_1 3935 4497" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23601391..23601753) /note="source:CACAO_M_E3248_F5_scaffold_1 3291 3653" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23602154..23603051 /note="source:INTACT170_F12_scaffold_5-int 5933 6831" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23604892..23605015 /note="source:CACAO_M_E69800_F12_scaffold_9 14421 14532" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23608518..23611165 /note="source:CACAO_M_S_E85177_F5_scaffold_7 17612 20266" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23613809..23613904) /note="source:CACAO_M_S_E5046_F335_scaffold_1 20006 20102" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23614483..23624339) /note="source:CACAO_M_S_E101856_F12_scaffold_9 3 9863" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23631593..23631698 /note="source:INTACT189_F49_scaffold_5-int 17792 17902" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23632873..23632992) /note="source:CACAO_M_S_E51648_F22_scaffold_4 9025 9140" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23633750..23633802 /note="source:INTACT189_F49_scaffold_5-int 17834 17883" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23635538..23635615) /note="source:CACAO_M_E53065_F12_scaffold_8 985 1070" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23635553..23635644 /note="source:INTACT189_F49_scaffold_5-int 17812 17903" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 23639076..23640348 /locus_tag="TCM_024233" /note="dbxref CacaoGD:Thecc1EG024233" mRNA join(23639076..23639498,23639649..23639722, 23639863..23640348) /locus_tag="TCM_024233" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008426t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.11 coverage" CDS join(23639439..23639498,23639649..23639722, 23639863..23640175) /locus_tag="TCM_024233" /note="paralog of Thecc1EG008426t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08940.1" /translation="MHSRIVGIHDVDAFSALSTQNNPYSNTYNPGWKNHPNFSWANDQ GTLRNLEIQVGQLANLLNNGAQGTLPSDTEVNLRRKGKEQVMAITLRSGEKIESGVNP ARLLDKPVENEIVIETTDKKIQKKKKESKGKLTTITLCSVHSETET" mobile_element complement(23641182..23641245) /note="source:CACAO_M_E639_F17_scaffold_1 4561 4624" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23642524..23642853 /note="source:CACAO_M_E639_F17_scaffold_1 1452 1809" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23642860..23645583 /note="source:CACAO_M_E43620_F144_scaffold_5 1 2724" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23645587..23646526 /note="source:CACAO_M_E639_F17_scaffold_1 1813 2745" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23649036..23649645 /note="source:scaffold_2_CACTA_0260 3905 4514" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23650045..23650933) /note="source:INTACT146F_F14_scaffold_2-int 4949 5823" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23650559..23651841) /note="source:scaffold_2_CACTA_0261 2626 3885" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23651433..23652738 /note="source:CACAO_M_E47740_F12_scaffold_6 5372 6722" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23651745..23652725) /note="source:INTACT146F_F14_scaffold_2-int 3174 4180" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23654598..23657163) /note="source:INTACT146F_F14_scaffold_2-int 3174 5823" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 23659216..23675459 /locus_tag="TCM_024235" /note="dbxref CacaoGD:Thecc1EG024235" mRNA join(23659216..23659400,23666647..23666808, 23669008..23669249,23670258..23670360,23671078..23671444, 23671994..23672104,23672220..23672299,23673628..23673672, 23675186..23675459) /locus_tag="TCM_024235" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" gene complement(23659810..23666247) /locus_tag="TCM_024236" /note="dbxref CacaoGD:Thecc1EG024236" mRNA complement(join(23659810..23659937,23662410..23662874, 23666112..23666247)) /locus_tag="TCM_024236" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(23662517..23662822) /locus_tag="TCM_024236" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08942.1" /translation="MASREMEWCLGRDFNTMRNKKGKIGKGRIGRTKTSFGDFIENNG LLDLEMAGNSYTWCRYKDGKVYSRLDRFLLRVEWMQYEYGLFKVIFQALCLTTTQLC" CDS join(23666775..23666808,23669008..23669249, 23670258..23670360,23671078..23671444,23671994..23672104, 23672220..23672299,23673628..23673672,23675186..23675199) /locus_tag="TCM_024235" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08941.1" /translation="MRVYREEIKCAESIFSFLLISFCILSLKNQFFVSKVSVLHKSLN FCLSRTNFFFSQNRFFTIDPYLRTNFFFSRIDSSCVVDFAYASLYIEQHRGSDFSILT TSLLMEYFHFDKNFNHLFIRTWQNGNFKKLEEESMISLERPFIKEKVWETIQTCHGNK ALGLEGYNLNFFKSQWQVVKEQVMKFMNEFYNIEKLGKRLNSSFVFLIPKISNQTIVN EFKHQLVKDVVQDCGQATCKLFNTCNQGGYSLMGIGVDMSVVGRWMKGKDNFMQNGII TLCLPRATIRSIPNIPYVPFSNTSQCRKRILKGSKGEKAYSKSASKRWILLGEEL" mobile_element complement(23669391..23669992) /note="source:scaffold_2_CACTA_0260 3919 4514" /mobile_element_type="transposon:TIR/CACTA" gene complement(23672985..23678957) /locus_tag="TCM_024237" /note="dbxref CacaoGD:Thecc1EG024237" mRNA complement(join(23672985..23673011,23676316..23676416, 23676495..23676583,23676842..23676929,23677294..23677360, 23678706..23678957)) /locus_tag="TCM_024237" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc6271t1" mobile_element 23673437..23673589 /note="source:INTACT405F_F91_scaffold_4-int 257 401" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(23673489..23673594) /note="source:INTACT537_F22_scaffold_2-int 16768 16873" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23674509..23674716 /note="source:CACAO_M_E3884_F22_scaffold_1 12926 13130" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(23676324..23676416,23676495..23676583, 23676842..23676929,23677294..23677360,23678706..23678767)) /locus_tag="TCM_024237" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08943.1" /translation="MSPFVSLLSMSSLLTLVEQSRGSHVHHVKLDGGSSKQELYLSKA SYTFAISDSSFAIPPDYDIWSEVRYCISEPFNLSKEREKGYFDANGNFVEYVNNNEIK DAWLDNIEDDIKYIGKTSGTTNVAVFTHIC" gene 23679052..23681354 /locus_tag="TCM_024238" /note="dbxref CacaoGD:Thecc1EG024238" mRNA join(23679052..23679155,23680644..23681354) /locus_tag="TCM_024238" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" mobile_element 23679565..23679686 /note="source:INTACT265_F12_scaffold_7-int 10272 10393" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23679788..23679812) /note="source:CACAO_M_E11774_F345_scaffold_2 1 251" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23679813..23680005) /note="source:scaffold_9_CACTA_0937 6413 6605" /mobile_element_type="transposon:TIR/CACTA" CDS 23680664..23680894 /locus_tag="TCM_024238" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08944.1" /translation="MRYLFGALLALHVESKPLISLVHYLYCVFHLITSFTFVFIAPSH GQMRYFISIIKGRGKPVAGVPPQFLIFFIISN" mobile_element 23683717..23683945 /note="source:INTACT19F_F94_scaffold_1-int 14303 14496" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23686682..23688715) /note="source:INTACT85F_F12_scaffold_2-int 9438 11471" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23688716..23691705 /note="source:CACAO_M_E43635_F7_scaffold_5 1 2990" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23691706..23692305) /note="source:INTACT85F_F12_scaffold_2-int 8778 9377" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23694912..23694993 /note="source:scaffold_9_CACTA_0937 5504 5584" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23696936..23697048) /note="source:scaffold_2_CACTA_0261 1 115" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23696965..23698141) /note="source:CACAO_M_E58601_F7_scaffold_9 4500 5672" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23700775..23700846 /note="source:CACAO_M_E48538_F49_scaffold_6 1 79" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23702679..23703361 /note="source:INTACT189_F49_scaffold_5-int 13687 14366" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23703405..23704148 /note="source:INTACT189_F49_scaffold_5-int 15618 16342" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23704156..23706904 /note="source:CACAO_M_E43643_F15_scaffold_5 1 2842" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23706893..23708047 /note="source:CACAO_M_E48538_F49_scaffold_6 11106 11819" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23708269..23708394 /note="source:INTACT189_F49_scaffold_5-int 17812 17941" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23711258..23712003) /note="source:CACAO_M_E1841_F5_scaffold_1 15930 16665" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23712102..23715096 /note="source:CACAO_M_E43647_F7_scaffold_5 1 2995" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23717079..23718105) /note="source:CACAO_M_S_E52921_F60_scaffold_5 2881 3920" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23718104..23719001) /note="source:CACAO_M_S_E52921_F60_scaffold_5 18211 19102" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23719002..23719148 /note="source:CACAO_M_E48538_F49_scaffold_6 1 142" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23719130..23720471) /note="source:scaffold_9_CACTA_0929 10188 11559" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23720327..23720489 /note="source:scaffold_5_CACTA_0591 3794 3956" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23720482..23720680) /note="source:CACAO_M_E52239_F256_scaffold_7 5926 6438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23720681..23722169 /note="source:scaffold_5_CACTA_0591 4836 6327" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23722170..23722978) /note="source:CACAO_M_E52239_F256_scaffold_7 3828 5925" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23723014..23724165 /note="source:CACAO_M_E52239_F256_scaffold_7 21305 22438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23724169..23724749 /note="source:INTACT189_F49_scaffold_5-int 17990 18572" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23724991..23725043) /note="source:CACAO_M_E1841_F5_scaffold_1 28129 28189" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23725661..23725983 /note="source:INTACT189_F49_scaffold_5-int 19301 19621" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23726085..23726145 /note="source:INTACT537_F22_scaffold_2-int 1052 1115" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23726130..23726444) /note="source:CACAO_M_S_E52921_F60_scaffold_5 17908 18215" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23730397..23730420) /note="source:scaffold_8_CACTA_0859 12106 12127" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23730421..23733174) /note="source:CACAO_M_E4903_F15_scaffold_2 5 2760" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23733532..23733599) /note="source:CACAO_M_E1841_F5_scaffold_1 27387 27454" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 23737942..23738987 /locus_tag="TCM_024240" /note="dbxref CacaoGD:Thecc1EG024240" mRNA 23737942..23738987 /locus_tag="TCM_024240" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS 23738179..23738955 /locus_tag="TCM_024240" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08945.1" /translation="MGKLFKIAIKLIKDVFELHSTLDAMTNINDNLVVYDLEQELYVN NVSVLDSVTRLSMMDKILYLIISWSLRLVPSKHSLVTGEDLWFLHHIKAQTPIDLASF IFANMKKIIVGTKTSLIYGQVITRLLQHFNIDISLDDAVSQPKNINLDKATISRIGYC ENAKTGTWVHNKAFQKETGNDNDDDEDKPQIALVEQSSSVMPSSSVGNMGTDASLDAM MEKINENTKHLNPLQDTIEDDSTKADHAMTSHLDHIDYYI" mobile_element 23739466..23739617 /note="source:INTACT189_F49_scaffold_5-int 17618 17764" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23739794..23739887 /note="source:INTACT189_F49_scaffold_5-int 17826 17902" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23742138..23743376 /note="source:CACAO_M_S_E52921_F60_scaffold_5 18369 19639" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23744915..23745368 /note="source:INTACT189_F49_scaffold_5-int 15471 15921" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23745369..23748388) /note="source:CACAO_M_S_E50813_F7_scaffold_4 1 3006" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23748389..23749345 /note="source:INTACT189_F49_scaffold_5-int 15928 16878" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23749364..23749451 /note="source:CACAO_M_E48538_F49_scaffold_6 11287 11379" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23749510..23750087 /note="source:CACAO_M_E48538_F49_scaffold_6 11333 11831" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23750146..23750212 /note="source:CACAO_M_E48538_F49_scaffold_6 12054 12125" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23750381..23750553 /note="source:CACAO_M_E48538_F49_scaffold_6 12163 12332" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23750530..23750756 /note="source:INTACT189_F49_scaffold_5-int 18432 18574" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23754902..23755107) /note="source:CACAO_M_E58601_F7_scaffold_9 10950 11145" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23757050..23757494 /note="source:CACAO_M_E3248_F5_scaffold_1 1653 2102" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23758215..23758362 /note="source:scaffold_5_CACTA_0607 9967 10098" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23760620..23762676) /note="source:scaffold_5_CACTA_0615 241 2253" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23762698..23763499) /note="source:scaffold_5_CACTA_0615 155 964" /mobile_element_type="transposon:TIR/CACTA" gene 23763691..23764366 /locus_tag="TCM_024241" /note="dbxref CacaoGD:Thecc1EG024241" mRNA 23763691..23764366 /locus_tag="TCM_024241" /product="VQ motif-containing protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s03600.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s03600.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13897t1" CDS 23763752..23764216 /locus_tag="TCM_024241" /codon_start=1 /product="VQ motif-containing protein, putative" /protein_id="EOY08946.1" /db_xref="Phytozome:POPTR_0016s03600.1" /translation="MDNSLGSLQHSKAAKKAKSKKKKNNNKPIKVVYISNPMKVKTSA SKFRALVQELTGQDAELPDPTKFTDTDDDDVGSNQKVPDAVKNSTDDHALEVPRVGDQ AVHHHEQPTRAHHDVPFETFDEVFTPQMLREFDRVLASEPFLMNNLDALRSL" gene 23765182..23767556 /locus_tag="TCM_024242" /note="dbxref CacaoGD:Thecc1EG024242" mRNA join(23765182..23765376,23765525..23766058, 23767257..23767556) /locus_tag="TCM_024242" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.46 coverage" CDS join(23765202..23765376,23765525..23765550) /locus_tag="TCM_024242" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08947.1" /translation="MLERQESFFKFITLYPLLHFLGFVFFSFWLVMMRKCLAHPQFCS PMERCFTLQGGWLYGAGMNTVG" mobile_element 23765418..23765490 /note="source:scaffold_1_CACTA_0011 7456 7528" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23765426..23765498) /note="source:INTACT146F_F14_scaffold_2-int 13458 13521" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23765436..23765511) /note="source:CACAO_M_E14113_F106_scaffold_3 13784 13859" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(23771802..23773331) /note="source:scaffold_4_CACTA_0507 4702 6218" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23778267..23779995) /note="source:scaffold_4_CACTA_0507 21 1801" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23783043..23786088 /note="source:scaffold_9_CACTA_0931 1 3057" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23792079..23792215) /note="source:scaffold_9_CACTA_0924 4075 4209" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23795525..23796767 /note="source:CACAO_M_S_E89272_F5_scaffold_8 1 1243" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23796764..23799380) /note="source:CACAO_M_S_E18857_F335_scaffold_3 1 2609" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23799381..23806741 /note="source:CACAO_M_E59541_F5_scaffold_9 1240 8612" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23806649..23806756) /note="source:CACAO_M_E58877_F5_scaffold_9 1481 1597" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23806757..23808614) /note="source:INTACT464_F222_scaffold_9-int 12909 14423" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23808907..23809431 /note="source:INTACT61_F128_scaffold_2-int 1946 2393" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23810383..23811062 /note="source:INTACT61_F128_scaffold_2-int 2863 3548" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23811058..23811123) /note="source:scaffold_2_CACTA_0248 7937 8004" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23811122..23811362) /note="source:scaffold_2_CACTA_0248 7345 7585" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23812203..23814000) /note="source:INTACT375F_F353_scaffold_3-int 10841 12640" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23814429..23818403) /note="source:INTACT52F_F339_scaffold_1-int 694 4553" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23818854..23819307 /note="source:INTACT257_F186_scaffold_6-int 18945 19427" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23819319..23820873 /note="source:CACAO_M_S_E89272_F5_scaffold_8 16978 18546" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23824049..23824199) /note="source:CACAO_M_S_E85177_F5_scaffold_7 20104 20250" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23827850..23827928 /note="source:CACAO_M_S_E90022_F9_scaffold_8 3085 3161" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23828070..23828130) /note="source:scaffold_1_CACTA_0024 3070 3130" /mobile_element_type="transposon:TIR/CACTA" gene complement(23831410..23848442) /locus_tag="TCM_024246" /note="dbxref CacaoGD:Thecc1EG024246" mRNA complement(join(23831410..23831696,23832891..23832938, 23833056..23833138,23833327..23833460,23834945..23835007, 23835165..23835208,23835515..23835562,23835744..23835783, 23835897..23836032,23836111..23836330,23836406..23836586, 23836676..23836699,23837074..23837288,23837589..23837875, 23838897..23839370,23848370..23848442)) /locus_tag="TCM_024246" /product="Transmembrane amino acid transporter family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29612.m000374" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043231t5" /inference="similar to AA sequence:Phytozome:Glyma02g30960.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc936t9" mRNA complement(join(23833019..23833460,23834945..23835007, 23835165..23835208,23835515..23835669,23835773..23835783, 23835897..23836032,23836111..23836330,23836406..23836586, 23836676..23836699,23837074..23837288,23837589..23837875, 23838897..23839307)) /locus_tag="TCM_024246" /product="Transmembrane amino acid transporter family protein, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:29612.m000374" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043231t5" /inference="similar to AA sequence:Phytozome:Glyma02g30960.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5205t4; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc936t9" mRNA complement(join(23833019..23833460,23834945..23835007, 23835165..23835208,23835515..23835656,23835760..23835783, 23835897..23836032,23836111..23836330,23836406..23836586, 23836676..23836699,23837074..23837288,23837589..23837875, 23838897..23839307)) /locus_tag="TCM_024246" /product="Transmembrane amino acid transporter family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:29612.m000374" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043231t5" /inference="similar to AA sequence:Phytozome:Glyma02g30960.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5205t3; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc936t9" CDS complement(join(23833368..23833460,23834945..23835007, 23835165..23835208,23835515..23835669,23835773..23835783, 23835897..23836032,23836111..23836330,23836406..23836586, 23836676..23836699,23837074..23837288,23837589..23837875, 23838897..23839273)) /locus_tag="TCM_024246" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG043231t5" /codon_start=1 /product="Transmembrane amino acid transporter family protein, putative isoform 3" /protein_id="EOY08950.1" /db_xref="Phytozome:Glyma02g30960.1" /db_xref="TAIR:AT2G41190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HKA8" /translation="MCTFITLSNLWSTASHSISLGNPAICLHDPSLCLFSISLSHSFY STPIIFSFSLFYFIVAVMADKVKDRDDEEFFMEYDGADNEEDLEETKVDDGSSGNISD DDSEGGSGSPSAAFSSQQWPQSFQETMDPYTITASPSFGVLGGVPNFTHFSFSSQSKS SLDLDGKLPLLPEHQKSCQKDFLDSISRAPSSWSQKYSLHKQLTGEFPVAYGCNVTQT IFNTVNVMVGVGLLSTPYTIAEGGWASLLVLIVFAVICCYTAILMKYCFESREGIISY PDLGEAAFGRFGRLFISVVLYTELYSYCVEFIILEGDNLTRLFPGVSFDWPGLKMDSM HLFGILTAFVVLPTVWLKDLRLISYLSAGGVVATLVIVLCLLFLGAAGNVGFHHTGQA LNWSGIPFVIGVYGFCHSGHSVFPNIYQSMADKSQFKRAMVLCFLLCILLYGGVAAMG FLEFGQGTLSQITLNMPPESFISKIALWTTVINPLTKYALLMIPLARSIEELLPDQVS NSLWCFIFLRAALVFSTVGAAFAMPFFGLMMALIGSVLSSMVAIIMPSLCFIKIVGRK ATRAQIVLSITVAAVGIVFAIIGTYSALKGIASNY" CDS complement(join(23833368..23833460,23834945..23835007, 23835165..23835208,23835515..23835656,23835760..23835783, 23835897..23836032,23836111..23836330,23836406..23836586, 23836676..23836699,23837074..23837288,23837589..23837875, 23838897..23839273)) /locus_tag="TCM_024246" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG043231t5" /codon_start=1 /product="Transmembrane amino acid transporter family protein, putative isoform 2" /protein_id="EOY08949.1" /db_xref="Phytozome:Glyma02g30960.1" /db_xref="TAIR:AT2G41190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HKA8" /translation="MCTFITLSNLWSTASHSISLGNPAICLHDPSLCLFSISLSHSFY STPIIFSFSLFYFIVAVMADKVKDRDDEEFFMEYDGADNEEDLEETKVDDGSSGNISD DDSEGGSGSPSAAFSSQQWPQSFQETMDPYTITASPSFGVLGGVPNFTHFSFSSQSKS SLDLDGKLPLLPEHQKSCQKDFLDSISRAPSSWSQKYSLHKQLTGEFPVAYGCNVTQT IFNTVNVMVGVGLLSTPYTIAEGGWASLLVLIVFAVICCYTAILMKYCFESREGIISY PDLGEAAFGRFGRLFISVVLYTELYSYCVEFIILEGDNLTRLFPGVSFDWPGLKMDSM HLFGILTAFVVLPTVWLKDLRLISYLSAGGVVATLVIVLCLLFLGAAGNVGFHHTGQA LNWSGIPFVIGVYGFCHSGHSVFPNIYQSMADKSQFKRAMVLCFLLCILLYGGVAAMG FLEFGQGTLSQITLNMPPESFISKIALWTTVINPFTKYALLMIPLARSIEELLPDQVS NSLWCFIFLRAALVFSTVGAAFAMPFFGLMMALIGSVLSSMVAIIMPSLCFIKIVGRK ATRAQIVLSITVAAVGIVFAIIGTYSALKGIASNY" CDS complement(join(23833368..23833460,23834945..23835007, 23835165..23835208,23835515..23835562,23835744..23835783, 23835897..23836032,23836111..23836330,23836406..23836586, 23836676..23836699,23837074..23837288,23837589..23837875, 23838897..23839273)) /locus_tag="TCM_024246" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG043231t5" /codon_start=1 /product="Transmembrane amino acid transporter family protein, putative isoform 1" /protein_id="EOY08948.1" /db_xref="Phytozome:Glyma02g30960.1" /db_xref="TAIR:AT2G41190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HKA8" /translation="MCTFITLSNLWSTASHSISLGNPAICLHDPSLCLFSISLSHSFY STPIIFSFSLFYFIVAVMADKVKDRDDEEFFMEYDGADNEEDLEETKVDDGSSGNISD DDSEGGSGSPSAAFSSQQWPQSFQETMDPYTITASPSFGVLGGVPNFTHFSFSSQSKS SLDLDGKLPLLPEHQKSCQKDFLDSISRAPSSWSQKYSLHKQLTGEFPVAYGCNVTQT IFNTVNVMVGVGLLSTPYTIAEGGWASLLVLIVFAVICCYTAILMKYCFESREGIISY PDLGEAAFGRFGRLFISVVLYTELYSYCVEFIILEGDNLTRLFPGVSFDWPGLKMDSM HLFGILTAFVVLPTVWLKDLRLISYLSAGGVVATLVIVLCLLFLGAAGNVGFHHTGQA LNWSGIPFVIGVYGFCHSGHSVFPNIYQSMADKSQFKRAMVLCFLLCILLYGGVAAMG FLEFGQGTLSQITLNMPPESFISKIALWTTVINPFTKYPFGCISLVFSTVGAAFAMPF FGLMMALIGSVLSSMVAIIMPSLCFIKIVGRKATRAQIVLSITVAAVGIVFAIIGTYS ALKGIASNY" mobile_element complement(23834518..23834568) /note="source:INTACT12_F107_scaffold_9-int 7665 7713" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23839286..23840715) /note="source:CACAO_on_E26_scaffold_4 1776 3204" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(23840713..23845511) /note="source:INTACT189_F49_scaffold_5-int 14897 19407" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23845461..23845511) /note="source:scaffold_4_CACTA_0498 3647 3709" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23845512..23848491 /note="source:CACAO_M_E52905_F288_scaffold_8 1 2982" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23848491..23852955) /note="source:INTACT1625F_F66_scaffold_10-int 1 4516" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23848492..23851544 /note="source:INTACT460_F49_scaffold_8-int 4813 7822" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23852956..23854763 /note="source:CACAO_on_E6_scaffold_1 1430 3202" /mobile_element_type="transposon:TIR/hAT" gene 23854247..23855335 /locus_tag="TCM_024249" /note="dbxref CacaoGD:Thecc1EG024249" mRNA join(23854247..23854306,23854408..23854426, 23854905..23855335) /locus_tag="TCM_024249" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.53 coverage" CDS join(23854254..23854306,23854408..23854426, 23854905..23855141) /locus_tag="TCM_024249" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08951.1" /translation="MKYKFLHNKLNNINKKRRMRCVSVEYTNVTERDKGHGQHGLIGM DKETAKTLQDCEWDSMRGALCRFVKNGLGRVAATATWLLLLQGSSIIACTTCFCYSVH " mobile_element 23858683..23860197 /note="source:CACAO_M_E43660_F17_scaffold_5 1 1515" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23864081..23864262) /note="source:CACAO_M_E4114_F49_scaffold_2 1575 1743" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23865830..23868447) /note="source:CACAO_M_E24408_F297_scaffold_4 1 2678" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23868961..23870381 /note="source:CACAO_M_E43661_F9_scaffold_5 1 1421" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(23872205..23878722) /locus_tag="TCM_024251" /note="dbxref CacaoGD:Thecc1EG024251" mRNA complement(join(23872205..23872497,23873166..23873255, 23878645..23878722)) /locus_tag="TCM_024251" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS complement(join(23872319..23872497,23873166..23873255, 23878645..23878660)) /locus_tag="TCM_024251" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08952.1" /translation="MRKERGVGMYKYSSDHSINCPHLIPYSCTTSIPFTLYVDDLLVT SNNTEVLHQFLQHLANKFYLKDLGNLNYFLGIEAISTSNGLFNTSIFKIS" mobile_element complement(23879137..23880284) /note="source:CACAO_M_E70226_F322_scaffold_10 1663 2811" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23881204..23882052 /note="source:CACAO_M_S_E15643_F163_scaffold_2 6467 7313" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(23882398..23883661) /note="source:CACAO_M_E49559_F88_scaffold_7 7841 9081" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 23883599..23883745 /note="source:scaffold_5_CACTA_0596 6980 7106" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(23883923..23884933) /note="source:CACAO_M_E49559_F88_scaffold_7 6492 7502" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(23885058..23888092) /locus_tag="TCM_024252" /note="dbxref CacaoGD:Thecc1EG024252" mRNA complement(join(23885058..23885378,23886181..23886259, 23887979..23888092)) /locus_tag="TCM_024252" /product="Uncharacterized protein" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.14 coverage" CDS complement(join(23885083..23885378,23886181..23886190)) /locus_tag="TCM_024252" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08953.1" /translation="MIVVKCPHRVALNAICIANLETTQPYPPIKEVDEELTRIGSIHF LNTFQVQLDKMKKELQQGLIYVDIVLNGKRPKLCSTWGLQAPSSPWERPKGVVSWLR" gene 23888090..23898626 /locus_tag="TCM_024253" /note="dbxref CacaoGD:Thecc1EG024253" mRNA join(23888090..23888583,23888711..23888801, 23888917..23888973,23889541..23889588,23891442..23891492, 23891573..23891616,23891706..23891769,23891945..23892031, 23894233..23894324,23894413..23894494,23895914..23895999, 23896135..>23896160) /locus_tag="TCM_024253" /product="Origin recognition complex subunit 4 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s12520.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s12520.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc612t11; inference alignment:Newbler:10:TSA:cgbaB_g06380t00001" mRNA join(23888090..23888583,23888711..23888801, 23888917..23888973,23889541..23889588,23891442..23891492, 23891573..23891616,23891706..23891769,23891945..23892031, 23894233..23894324,23894413..23894494,23895914..23895993, 23896135..>23896160) /locus_tag="TCM_024253" /product="Origin recognition complex subunit 4 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s12520.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s12520.1" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc612t5; inference alignment:Newbler:10:TSA:cgbaB_g06380t00001" mRNA join(23888129..23888583,23888711..23888801, 23888917..23888973,23889541..23889588,23891442..23891492, 23891573..23891616,23891706..23891769,23891945..23892031, 23894233..23894324,23894413..23894494,23895914..23895999, 23896135..23896244,23897608..23897700,23897781..23897845, 23897968..23898111,23898312..23898626) /locus_tag="TCM_024253" /product="Origin recognition complex subunit 4 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s12520.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s12520.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5140t3; inference alignment:Newbler:10:TSA:cgbaB_g06380t00001" mRNA join(23888187..23888583,23888711..23888801, 23888917..23888973,23889541..23889588,23891442..23891492, 23891573..23891616,23891706..23891769,23891945..23892031, 23894233..23894324,23894413..23894494,23895914..23895999, 23896135..23896244,23897608..23897700,23897784..23897845, 23897968..23898111,23898312..23898625) /locus_tag="TCM_024253" /product="Origin recognition complex subunit 4 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s12520.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s12520.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06380t00001" CDS join(23888462..23888583,23888711..23888801, 23888917..23888973,23889541..23889588,23891442..23891492, 23891573..23891616,23891706..23891769,23891945..23892031, 23894233..23894324,23894413..23894494,23895914..23895999, 23896135..23896244,23897608..23897700,23897781..23897845, 23897968..23898111,23898312..23898341) /locus_tag="TCM_024253" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Origin recognition complex subunit 4 isoform 2" /protein_id="EOY08955.1" /db_xref="Phytozome:POPTR_0008s12520.1" /db_xref="TAIR:AT2G01120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IM83" /translation="MGREKEKENPSQKALNLLRTRLSNPNFVFKPLSDSPDSNYSKLK FIISSSITEACNNSILLLGPRGSGKVAVLELVLSDLLQQYPEAISVIRLNGLLHGDDN CALKEIARQLCMEHQLLFSKVASFDDNSQFLIAMLRECGLAHKTIIFVLDEFDLFAQA KQRLLYSLLDAMQSVTSQAVVIGVSCRLDVDQLLEKRVRSRFSHRKLLFLPPSKEDTE RFLEHILSLPKDSSLPHSYTVEFNGRLKNVLADERFKELINTYLSFNSTIGQLMRFLF QAVSYMDLDVGFLSLENFKTALSSTQRQPKSECIKDCSILELYLLVCMKRLEVKEQNS YNFNSVMTAEYKSIHDFQTSDNYAGNVCLRAFEHLLQRELISFTDNRGHNQSVEFRPV KLLISPAELYHGLKSYRSCPAILLKLIAR" CDS join(23888462..23888583,23888711..23888801, 23888917..23888973,23889541..23889588,23891442..23891492, 23891573..23891616,23891706..23891769,23891945..23892031, 23894233..23894324,23894413..23894494,23895914..23895999, 23896135..23896244,23897608..23897700,23897784..23897845, 23897968..23898111,23898312..23898341) /locus_tag="TCM_024253" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Origin recognition complex subunit 4 isoform 1" /protein_id="EOY08954.1" /db_xref="Phytozome:POPTR_0008s12520.1" /db_xref="TAIR:AT2G01120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IM83" /translation="MGREKEKENPSQKALNLLRTRLSNPNFVFKPLSDSPDSNYSKLK FIISSSITEACNNSILLLGPRGSGKVAVLELVLSDLLQQYPEAISVIRLNGLLHGDDN CALKEIARQLCMEHQLLFSKVASFDDNSQFLIAMLRECGLAHKTIIFVLDEFDLFAQA KQRLLYSLLDAMQSVTSQAVVIGVSCRLDVDQLLEKRVRSRFSHRKLLFLPPSKEDTE RFLEHILSLPKDSSLPHSYTVEFNGRLKNVLADERFKELINTYLSFNSTIGQLMRFLF QAVSYMDLDVGFLSLENFKTALSSTQRQPKSECIKDCSILELYLLVCMKRLEVKEQNS YNFNSVMTEYKSIHDFQTSDNYAGNVCLRAFEHLLQRELISFTDNRGHNQSVEFRPVK LLISPAELYHGLKSYRSCPAILLKLIAR" CDS join(23888462..23888583,23888711..23888801, 23888917..23888973,23889541..23889588,23891442..23891492, 23891573..23891616,23891706..23891769,23891945..23892031, 23894233..23894324,23894413..23894494,23895914..23895999, 23896135..>23896159) /locus_tag="TCM_024253" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Origin recognition complex subunit 4 isoform 3" /protein_id="EOY08956.1" /db_xref="Phytozome:POPTR_0008s12520.1" /db_xref="TAIR:AT2G01120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6T982" /translation="MGREKEKENPSQKALNLLRTRLSNPNFVFKPLSDSPDSNYSKLK FIISSSITEACNNSILLLGPRGSGKVAVLELVLSDLLQQYPEAISVIRLNGLLHGDDN CALKEIARQLCMEHQLLFSKVASFDDNSQFLIAMLRECGLAHKTIIFVLDEFDLFAQA KQRLLYSLLDAMQSVTSQAVVIGVSCRLDVDQLLEKRVRSRFSHRKLLFLPPSKEDTE RFLEHILSLPKDSSLPHSYTVEFNGRLKNVLADERFKELINTYLSFNSTIGQLMRFLF QAVSYMD" CDS join(23888462..23888583,23888711..23888801, 23888917..23888973,23889541..23889588,23891442..23891492, 23891573..23891616,23891706..23891769,23891945..23892031, 23894233..23894324,23894413..23894494,23895914..23895993, 23896135..>23896159) /locus_tag="TCM_024253" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Origin recognition complex subunit 4 isoform 4" /protein_id="EOY08957.1" /db_xref="Phytozome:POPTR_0008s12520.1" /db_xref="TAIR:AT2G01120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6T982" /translation="MGREKEKENPSQKALNLLRTRLSNPNFVFKPLSDSPDSNYSKLK FIISSSITEACNNSILLLGPRGSGKVAVLELVLSDLLQQYPEAISVIRLNGLLHGDDN CALKEIARQLCMEHQLLFSKVASFDDNSQFLIAMLRECGLAHKTIIFVLDEFDLFAQA KQRLLYSLLDAMQSVTSQAVVIGVSCRLDVDQLLEKRVRSRFSHRKLLFLPPSKEDTE RFLEHILSLPKDSSLPHSYTVEFNGRLKNVLADERFKELINTYLSFNSTIGQLMRFQA VSYMD" gene complement(23900222..23902912) /locus_tag="TCM_024255" /note="dbxref CacaoGD:Thecc1EG024255" mRNA complement(join(23900222..23900704,23900791..23900856, 23901757..23901933,23902088..23902144,23902235..23902310, 23902804..23902912)) /locus_tag="TCM_024255" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.34 coverage" CDS complement(join(23900433..23900704,23900791..23900856, 23901757..23901933,23902088..23902144,23902235..23902310, 23902804..23902815)) /locus_tag="TCM_024255" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08958.1" /translation="MKTWNSGPRNEQVVDDAKQEFQAQATPPQDQNEPIEITEQQFHA QVEGNSNVLVEIVKQQFQGQVEKAVESPMHFYSFRKCKTTTYLRRKNIADVSSIIHDM KRQVIGAHFNIPFAHTCVMIDMNDNQLGVGSNLRVFLDRLAKVDDEQKFVRKNPFGQG PLTKQSESWTYYHNIVSRLTTLRLSQKKKKQKWRLQHYGELEAKSATLWQIPNAVTIC F" mobile_element 23903768..23905331 /note="source:INTACT711_F307_scaffold_9-int 10182 11729" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23904962..23908769) /note="source:INTACT1625F_F66_scaffold_10-int 4523 8346" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23908770..23909163) /note="source:INTACT51_F23_scaffold_9-int 5421 5811" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(23909188..23911499) /note="source:INTACT51_F23_scaffold_9-int 3136 5444" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(23911648..23911694) /note="source:INTACT51_F23_scaffold_9-int 3093 3139" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 23913061..23917289 /note="source:INTACT12_F107_scaffold_9-int 4815 11755" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23916878..23917656) /note="source:INTACT1625F_F66_scaffold_10-int 7584 8362" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23925050..23928157 /note="source:CACAO_M_E53278_F306_scaffold_8 1 3104" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23928468..23937821 /note="source:CACAO_M_E43663_F86_scaffold_5 1 9354" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23939190..23944500) /note="source:CACAO_M_E9395_F12_scaffold_2 18601 23874" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23944497..23945134) /note="source:INTACT130_F12_scaffold_9-int 4846 5483" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23945116..23945241 /note="source:INTACT125_F13_scaffold_10-int 8212 8322" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23948235..23953048 /note="source:CACAO_M_E65173_F256_scaffold_9 5248 10103" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23955602..23956642) /note="source:CACAO_M_E84908_F12_scaffold_10 3415 4430" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 23956432..23956811 /note="source:CACAO_M_E43348_F5_scaffold_5 4616 4991" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23959052..23962111) /note="source:CACAO_M_S_E109876_F7_scaffold_9 6919 9929" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23962806..23965332) /note="source:INTACT127_F12_scaffold_6-int 8678 11178" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 23966252..23968488 /locus_tag="TCM_024259" /note="dbxref CacaoGD:Thecc1EG024259" mRNA join(23966252..23966577,23966670..23967214, 23967298..23967379,23967461..23967572,23967662..23967894) /locus_tag="TCM_024259" /product="Thioredoxin superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:28266.m000197" /inference="similar to AA sequence:ricco:28266.m000197" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02812t00001; alternateUTRof:Thecc1EG024259t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5118t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc597t4" mRNA join(23966266..23966340,23966427..23966577, 23966670..23967214,23967298..23967379,23967461..23967572, 23967662..23968488) /locus_tag="TCM_024259" /product="Thioredoxin superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:28266.m000197" /inference="similar to AA sequence:ricco:28266.m000197" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5118t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5118t1" mRNA join(23966341..23966577,23966670..23967214, 23967298..23967379,23967461..23967572,23967662..23968488) /locus_tag="TCM_024259" /product="Thioredoxin superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:28266.m000197" /inference="similar to AA sequence:ricco:28266.m000197" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5118t2; alternateUTRof:Thecc1EG024259t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5118t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc597t4" CDS join(23966452..23966577,23966670..23967214, 23967298..23967379,23967461..23967572,23967662..23967789) /locus_tag="TCM_024259" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28266.m000197" /codon_start=1 /product="Thioredoxin superfamily protein isoform 1" /protein_id="EOY08959.1" /db_xref="TAIR:AT2G31840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SKB6" /translation="MALQHTLNIQYRYWLSPAKENKLKPFLLSSSANPNLPKLPFWRG SSIRNGVRTHGMVEEIGKKFAGRELSDSDDEDDDDSSTKKGEMGDAYHFDDDERREWR AKIRDVLCKHPEIQEELDPVEKLNQMQKLLADYPLVVDEDDPDWPEDADGWGFNLGQF FDKITIKNAKKDKDDEDYDSENEVVWQDDNYIRPIKQIKIAEWEETVFKDISPLIILV HNRYKRPKENERVWDELEKAVHVIWNCSLPSPRCVAVDAVVEDALVSALKVSVFPELI FTKAGKILYREQAIRTADELSKMMAFFYYGAAKPPCLDCVGNSQEMIPSVAINR" CDS join(23966452..23966577,23966670..23967214, 23967298..23967379,23967461..23967572,23967662..23967789) /locus_tag="TCM_024259" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28266.m000197" /codon_start=1 /product="Thioredoxin superfamily protein isoform 1" /protein_id="EOY08960.1" /db_xref="TAIR:AT2G31840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SKB6" /translation="MALQHTLNIQYRYWLSPAKENKLKPFLLSSSANPNLPKLPFWRG SSIRNGVRTHGMVEEIGKKFAGRELSDSDDEDDDDSSTKKGEMGDAYHFDDDERREWR AKIRDVLCKHPEIQEELDPVEKLNQMQKLLADYPLVVDEDDPDWPEDADGWGFNLGQF FDKITIKNAKKDKDDEDYDSENEVVWQDDNYIRPIKQIKIAEWEETVFKDISPLIILV HNRYKRPKENERVWDELEKAVHVIWNCSLPSPRCVAVDAVVEDALVSALKVSVFPELI FTKAGKILYREQAIRTADELSKMMAFFYYGAAKPPCLDCVGNSQEMIPSVAINR" CDS join(23966452..23966577,23966670..23967214, 23967298..23967379,23967461..23967572,23967662..23967789) /locus_tag="TCM_024259" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:28266.m000197" /codon_start=1 /product="Thioredoxin superfamily protein isoform 1" /protein_id="EOY08961.1" /db_xref="TAIR:AT2G31840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SKB6" /translation="MALQHTLNIQYRYWLSPAKENKLKPFLLSSSANPNLPKLPFWRG SSIRNGVRTHGMVEEIGKKFAGRELSDSDDEDDDDSSTKKGEMGDAYHFDDDERREWR AKIRDVLCKHPEIQEELDPVEKLNQMQKLLADYPLVVDEDDPDWPEDADGWGFNLGQF FDKITIKNAKKDKDDEDYDSENEVVWQDDNYIRPIKQIKIAEWEETVFKDISPLIILV HNRYKRPKENERVWDELEKAVHVIWNCSLPSPRCVAVDAVVEDALVSALKVSVFPELI FTKAGKILYREQAIRTADELSKMMAFFYYGAAKPPCLDCVGNSQEMIPSVAINR" mobile_element 23971995..23978928 /note="source:INTACT543_F86_scaffold_5-int 836 7766" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23979029..23980620) /note="source:CACAO_M_E50663_F86_scaffold_7 1 1592" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 23984559..23986231 /locus_tag="TCM_024261" /note="dbxref CacaoGD:Thecc1EG024261" mRNA join(23984559..23984626,23985161..23985278, 23985385..23985457,23985691..23986231) /locus_tag="TCM_024261" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29612.m000381" /inference="similar to AA sequence:ricco:29612.m000381" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2299t1" CDS join(23984605..23984626,23985161..23985278, 23985385..23985457,23985691..23985936) /locus_tag="TCM_024261" /note="dbxref ricco:29612.m000381" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08962.1" /db_xref="TAIR:AT2G41200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2HW51" /translation="MGQNASAGKKKGKEIDAVIEKCYQTYFKDKKDWTSAKFYGAVCE TVEEINKKLGSTQLSVPKTTTLELAYGRYKEAAEGELSKEEFQGILQEVLIETGFTGI GAKDILLYLFGIPVTGLMIKKRAALKIHDDLFIPAITSATVFLLAKLKKI" gene 23986509..23991609 /locus_tag="TCM_024262" /note="dbxref CacaoGD:Thecc1EG024262" mRNA join(23986509..23988276,23989004..23989171, 23989482..23989647,23989740..23989856,23990017..23990210, 23990439..23990569,23990697..23990769,23990965..23991609) /locus_tag="TCM_024262" /product="Phosphatidyl inositol monophosphate 5 kinase 4" /inference="alignment:exonerate- protein:2:ricco:29612.m000380" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045116t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s03620.1" /note="quality class is strong, express is weak, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.26 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc4569t1" CDS join(23987102..23988276,23989004..23989171, 23989482..23989647,23989740..23989856,23990017..23990210, 23990439..23990569,23990697..23990769,23990965..23991253) /locus_tag="TCM_024262" /note="paralog of Thecc1EG045116t1" /codon_start=1 /product="Phosphatidyl inositol monophosphate 5 kinase 4" /protein_id="EOY08963.1" /db_xref="Phytozome:POPTR_0016s03620.1" /db_xref="TAIR:AT3G56960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M1K2" /translation="MNKEQSSVLRAWEATVRKTQAAKKRANSIFGTISMANAAEDDPE DDHDKSVSISGDAHFAEKILPNGDYYTGHWYDNFPNGQGKYLWTDGCMYVGEWNRGKT MGRGRFSWPSGATYEGEFKSGYMDGTGIYTGSNGDTYKGQWVMNLKHGHGLKNYSNGD WYDGEWRRGLQEGHGKYQWKDGDHYVGEWKNGVICGKGTFVWSNGNKYDGYWEDGMPK GNGTYQWPDGSFYVGNWSKDPDEQNGTYYPSESSLAANLEWDPKHVFNELADCKICPG ERVSILPSQKKLAIWYSTKGGDKPRRMSVDGRVSVGIERPFDKMNMWETDGDGHDLGE VRRDLDCELLGVHHDDTNPKFNLGLPLKAPKPGKRQGETISKGHKNYELMLNLQLGIR HSAGRPAPATSLDLKASAFDPKEKIWTRFPPEGSKYTPPHQSSEFKWKDYCPVVFRTL RKLFKVDPADYMISICGNDALRELSSPGKSGSFFYLTDDDRYMIKTMKKSEVKVLLRM LSAYYNHVRSFENTLVIKYYGLHCVKLTGPTQKKVRFIIMGNLLRSEYTIHRRFDLKG SSLGRITEKPASEIDDTTILKDLDLNFIFKLQKAWFQEFCRQIDRDCEFLEQERTMDY SLLVGLHFREISTHGELIPCGRRTPSGNSENESAPRLSRTDVDQLLLDPKRWASIKLG ANMPARVERTIRKPESELQLVGEQTGECYEVVMFFGIIDILQDYDITKKLEHAYKSIH YDPTSISAVDPKQYSKRFRDFIFRVFAEDT" mobile_element complement(23992475..23993755) /note="source:scaffold_2_CACTA_0263 403 1632" /mobile_element_type="transposon:TIR/CACTA" mobile_element 23994919..23995404 /note="source:CACAO_M_S_E17777_F2_scaffold_3 7406 7857" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(23994962..23995438) /note="source:CACAO_M_S_E101805_F5_scaffold_9 1905 2331" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24000182..24002049 /note="source:CACAO_M_E43668_F49_scaffold_5 1 1850" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24002482..24007156 /note="source:INTACT160_F4_scaffold_7-int 8845 13507" /mobile_element_type="retrotransposon:LTR/Copia" gene 24002840..24004210 /locus_tag="TCM_024263" /note="dbxref CacaoGD:Thecc1EG024263" mRNA 24002840..24004210 /locus_tag="TCM_024263" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027334t1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.73 coverage" CDS 24003123..24003551 /locus_tag="TCM_024263" /note="paralog of Thecc1EG027334t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08964.1" /translation="MDESLVVTTLLEESYVAEYVFRSCVVQIKDRDTWVDLVLMITLG FDVILGMDWLASCYVNVDYYRKLVKFKFLGEPSFVIYGHSSHLVDSVMATITKEVHSE EGNLTATPVVNEFEDVFPEELLGLPLQREIKFCIDLILET" mobile_element 24007324..24007899 /note="source:INTACT160_F4_scaffold_7-int 13503 14102" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 24007900..24008102 /note="source:scaffold_5_CACTA_0599 10880 11654" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24008052..24008717 /note="source:INTACT160_F4_scaffold_7-int 14267 14954" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(24008742..24008821) /note="source:CACAO_M_S_E17777_F2_scaffold_3 7162 7244" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24009219..24009319) /note="source:CACAO_M_E50311_F328_scaffold_7 5009 5107" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24009434..24009720 /note="source:scaffold_2_CACTA_0263 13002 13283" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24009685..24009768) /note="source:CACAO_M_S_E31635_F14_scaffold_3 3208 3292" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24011234..24011314 /note="source:INTACT88_F12_scaffold_4-int 13490 13566" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24011342..24012867 /note="source:CACAO_M_S_E66039_F17_scaffold_5 1 1526" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24013917..24015521 /note="source:CACAO_M_E36509_F87_scaffold_5 1 1605" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24015521..24016111) /note="source:CACAO_M_S_E64023_F13_scaffold_5 16487 17075" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(24018066..24019642) /locus_tag="TCM_024266" /note="dbxref CacaoGD:Thecc1EG024266" mRNA complement(join(24018066..24018345,24019428..24019642)) /locus_tag="TCM_024266" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026011t1" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS complement(join(24018146..24018345,24019428..24019626)) /locus_tag="TCM_024266" /note="paralog of Thecc1EG026011t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08965.1" /translation="MFQFMSLGCKIDNIINNKAGLYVFKINGQNHYKIGSLLPIVVFL IVGNIPKFAQLLHMKLKMKFQIVTYTIEFQKLGLPHVHILLWLHHDHKCLSSEDIDRI ISAELPANHVDLIRYKVVAEFMLYGPSGLS" mobile_element 24020410..24020528 /note="source:CACAO_M_S_E64608_F12_scaffold_5 3718 3832" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24021150..24024057 /note="source:CACAO_M_E43669_F281_scaffold_5 1 2908" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24026816..24029984) /note="source:CACAO_M_E53114_F328_scaffold_8 1 3204" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 24032339..24081573 /locus_tag="TCM_024267" /note="dbxref CacaoGD:Thecc1EG024267" mRNA join(24032339..24032905,24034818..24035443, 24038036..24038348,24041247..24041689,24041810..24041941, 24043168..24043266,24043678..24043748,24044521..24044617, 24045352..24045444,24045787..24045932,24053008..24053167, 24054144..24054254,24054370..24054585,24055207..24055364, 24057688..24057817,24058494..24058552,24058658..24058763, 24061315..24061411,24061727..24061842,24061944..24062141, 24062534..24062644,24063277..24063516,24064115..24064213, 24067948..24068043,24068141..24068338,24068446..24068520, 24068663..24068791,24068896..24068994,24071413..24071555, 24071646..24071739,24072153..24072391,24072474..24072552, 24073998..24074081,24075504..24076210,24081196..24081573) /locus_tag="TCM_024267" /product="Glutamate synthase 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g28410.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015379t3" /inference="similar to AA sequence:Phytozome:GSVIVT01033621001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc374t3" mRNA join(24035063..24035443,24038036..24038348, 24041247..24041689,24041810..24041941,24043168..24043266, 24043678..24043748,24044521..24044617,24045352..24045444, 24045787..24045932,24053008..24053167,24054144..24054254, 24054370..24054585,24055207..24055364,24057688..24057817, 24058494..24058552,24058658..24058763,24061315..24061411, 24061727..24061842,24061944..24062141,24062534..24062644, 24063277..24063516,24064115..24064213,24067948..24068043, 24068141..24068338,24068446..24068520,24068663..24068791, 24068896..24068994,24071413..24071555,24071646..24071739, 24072153..24072395,24072476..24072552,24073998..24074081, 24075504..24075971) /locus_tag="TCM_024267" /product="Glutamate synthase 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g28410.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015379t3" /inference="similar to AA sequence:ricco:29612.m000378" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc374t2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc374t3" CDS join(24035162..24035443,24038036..24038348, 24041247..24041689,24041810..24041941,24043168..24043266, 24043678..24043748,24044521..24044617,24045352..24045444, 24045787..24045932,24053008..24053167,24054144..24054254, 24054370..24054585,24055207..24055364,24057688..24057817, 24058494..24058552,24058658..24058763,24061315..24061411, 24061727..24061842,24061944..24062141,24062534..24062644, 24063277..24063516,24064115..24064213,24067948..24068043, 24068141..24068338,24068446..24068520,24068663..24068791, 24068896..24068994,24071413..24071555,24071646..24071739, 24072153..24072391,24072474..24072552,24073998..24074081, 24075504..24075665) /locus_tag="TCM_024267" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG015379t3" /codon_start=1 /product="Glutamate synthase 1 isoform 1" /protein_id="EOY08966.1" /db_xref="Phytozome:GSVIVT01033621001" /db_xref="TAIR:AT5G04140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZNZ7" /translation="MALQSLSPIPYLSSKPTSVLFSSDNGLLVVDFVGLYCKSKATTR RRIGLSADIRSKRCFSTAATNNSVRAVLHLPASITTTSSSDHRSSTPQPKVANLEDII SERGACGVGFITNLDNKASHGIVEDALTALGCMEHRGGCGADNDSGDGSGVMTSIPWD LFDNWAEEQGIASFDKLHTGVGMIFLPKDDNLMEKAKKVIVNTFRQEGLEVLGWRPVP VNTSVVGFYAKEAMPNIQQVFVRIIKEENVDDIERELYICRKLIERAAASESWGSELY FCSLSNQTIVYKGMLRSEVLGLFYADLQDDLYKSPFAIYHRRYSTNTSPRWPLAQPMR FLGHNGEINTIQGNLNWMQSRETSLKSPVWRGRENEIRPFGNPKASDSANLDSAAELL IRSGRTPDEALMILVPEAYKNHPTLSIKYPEVVDFYDYYKGQMEAWDGPALLLFSDGK TVGACLDRNGLRPARYWRTIDNVVYVASEVGVLPVDDSKVTMKGRLGPGMMISVDLLN GQVYENTEVKRRVAASNPYGKWLSENMRSLKPANFLSATILDNETILRRQQAFGYSSE DVQMIIETMAAQAKEPTFCMGDDIPLAILSQKPHMLYDYFKQRFAQVTNPAIDPLREG LVMSLEVNIGKRGNILEVGPENASQVTMSSPVLNEGELESLLKDPQLKAKVLATFFDI RKGVEGSLEKTLYKLCEAADEAVRTGSQLLVLSDRANELEATRPAIPILLAVAAVHQH LIQNGLRMSASIVADTAQCFSTHQFACLIGYGASAVCPYLALETCRQWRLSAKTVNLM RNGKMPTVTIEQAQTNFCKAIKAGLLKILSKMGISLLSSYCGAQIFEIYGLGKEIVDF AFCGSVSKIGGLTFDELARETLSFWVKAFSEDTAKRLENFGFIQFRPGGEYHGNNPEM SKLLHKAVRQKSESAYSIYQQHLANRPVNVIRDLLEFKSDRAPIPVGKVEPALSIVQR FCTGGMSLGAISRETHEAIAIAMNRLGGKSNSGEGGEDPIRWSPLTDVDDGYSPTLPH LKGLQNGDTATSAIKQVASGRFGVTPTFLANADQLEIKIAQGAKPGEGGQLPGKKVSA YIARLRNSKPGVPLISPPPHHDIYSIEDLAQLIFDLHQVNPKAKVSVKLVAEAGIGTV ASGVAKGNADIIQISGHDGGTGASPISSIKHAGGPWELGLTETHQTLIENGLRERVIL RVDGGLKSGVDVLMAAAMGADEYGFGSLAMIATGCVMARICHTNNCPVGVASQREELR ARFPGVPGDLVNFFLYVAEEVRGMLAQMGYEKLDDIIGRTDLLKPRDISLVKTQHLDM DYILSSVGLPKWSSTAIRNQEVHSNGPVLDDILLADPEIPDAIENEKEVHKTIKIYNV DRSVCGRIAGVIAKKYGDTGFAGQLNITFTGSAGQSFACFLTPGMNIRVIGEANDYVG KGMAGGELVVTPVENTGFCPEDATIVGNTGLYGATGGQIFVRGKAGERFAVRNSLAQA VVEGTGDHCCEYMTGGCVVVLGKVGRNVAAGMTGGLAYILDEDDTLIPKVNKEIVKIQ RLTAPVGQMQLMSLIEAHVEKTGSTKGSKILKEWDKYLPLFWQLVPPSEEDTPEACAD YPSTAAEQVTLQSA" CDS join(24035162..24035443,24038036..24038348, 24041247..24041689,24041810..24041941,24043168..24043266, 24043678..24043748,24044521..24044617,24045352..24045444, 24045787..24045932,24053008..24053167,24054144..24054254, 24054370..24054585,24055207..24055364,24057688..24057817, 24058494..24058552,24058658..24058763,24061315..24061411, 24061727..24061842,24061944..24062141,24062534..24062644, 24063277..24063516,24064115..24064213,24067948..24068043, 24068141..24068338,24068446..24068520,24068663..24068791, 24068896..24068994,24071413..24071555,24071646..24071739, 24072153..24072395) /locus_tag="TCM_024267" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29612.m000378; paralog of Thecc1EG015379t3" /codon_start=1 /product="Glutamate synthase 1 isoform 2" /protein_id="EOY08967.1" /db_xref="TAIR:AT5G04140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZNZ7" /translation="MALQSLSPIPYLSSKPTSVLFSSDNGLLVVDFVGLYCKSKATTR RRIGLSADIRSKRCFSTAATNNSVRAVLHLPASITTTSSSDHRSSTPQPKVANLEDII SERGACGVGFITNLDNKASHGIVEDALTALGCMEHRGGCGADNDSGDGSGVMTSIPWD LFDNWAEEQGIASFDKLHTGVGMIFLPKDDNLMEKAKKVIVNTFRQEGLEVLGWRPVP VNTSVVGFYAKEAMPNIQQVFVRIIKEENVDDIERELYICRKLIERAAASESWGSELY FCSLSNQTIVYKGMLRSEVLGLFYADLQDDLYKSPFAIYHRRYSTNTSPRWPLAQPMR FLGHNGEINTIQGNLNWMQSRETSLKSPVWRGRENEIRPFGNPKASDSANLDSAAELL IRSGRTPDEALMILVPEAYKNHPTLSIKYPEVVDFYDYYKGQMEAWDGPALLLFSDGK TVGACLDRNGLRPARYWRTIDNVVYVASEVGVLPVDDSKVTMKGRLGPGMMISVDLLN GQVYENTEVKRRVAASNPYGKWLSENMRSLKPANFLSATILDNETILRRQQAFGYSSE DVQMIIETMAAQAKEPTFCMGDDIPLAILSQKPHMLYDYFKQRFAQVTNPAIDPLREG LVMSLEVNIGKRGNILEVGPENASQVTMSSPVLNEGELESLLKDPQLKAKVLATFFDI RKGVEGSLEKTLYKLCEAADEAVRTGSQLLVLSDRANELEATRPAIPILLAVAAVHQH LIQNGLRMSASIVADTAQCFSTHQFACLIGYGASAVCPYLALETCRQWRLSAKTVNLM RNGKMPTVTIEQAQTNFCKAIKAGLLKILSKMGISLLSSYCGAQIFEIYGLGKEIVDF AFCGSVSKIGGLTFDELARETLSFWVKAFSEDTAKRLENFGFIQFRPGGEYHGNNPEM SKLLHKAVRQKSESAYSIYQQHLANRPVNVIRDLLEFKSDRAPIPVGKVEPALSIVQR FCTGGMSLGAISRETHEAIAIAMNRLGGKSNSGEGGEDPIRWSPLTDVDDGYSPTLPH LKGLQNGDTATSAIKQVASGRFGVTPTFLANADQLEIKIAQGAKPGEGGQLPGKKVSA YIARLRNSKPGVPLISPPPHHDIYSIEDLAQLIFDLHQVNPKAKVSVKLVAEAGIGTV ASGVAKGNADIIQISGHDGGTGASPISSIKHAGGPWELGLTETHQTLIENGLRERVIL RVDGGLKSGVDVLMAAAMGADEYGFGSLAMIATGCVMARICHTNNCPVGVASQREELR ARFPGVPGDLVNFFLYVAEEVRGMLAQMGYEKLDDIIGRTDLLKPRDISLVKTQHLDM DYILSSVGLPKWSSTAIRNQEVHSNGPVLDDILLADPEIPDAIENEKEVHKTIKIYNV DRSVCGRIAGVIAKKYGDTGFAGQLNITFTGSAGQSFACFLTPGMNIRVIGEANDYVG KGMAGGELVVTPVENTGFCPEDATIVGNTGLYGATGGQIFVRGKAGERFAVRNSLAQA VVEGTGDHCCEYMTGGCVVVLGK" gene complement(24046648..24051345) /locus_tag="TCM_024268" /note="dbxref CacaoGD:Thecc1EG024268" mRNA complement(join(24046648..24047137,24047291..24048314, 24048527..24049467,24049835..24050445,24050898..24051345)) /locus_tag="TCM_024268" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01010555001.6" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009017t1" /inference="similar to AA sequence:Phytozome:Glyma10g10160.1" /note="quality class is medium-expresste, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.60 coverage; weak similarity to Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" mobile_element 24047397..24052133 /note="source:CACAO_M_E43670_F188_scaffold_5 1 4737" /mobile_element_type="retrotransposon:LTR/Copia" CDS complement(join(24047614..24048314,24048527..24049467, 24049835..24050445,24050898..24051005)) /locus_tag="TCM_024268" /note="paralog of Thecc1EG009017t1; weak similarity to Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08968.1" /db_xref="Phytozome:Glyma10g10160.1" /db_xref="TAIR:AT4G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AWD0" /translation="MLIVVVESQEELCAITVISRAIQSVFVGNSKISLIKDLATKQII GKGCESGGLYYLDTQVPRSIACSSVLTPFEVHCRLGHPSLSSLKKLCPQFQNVFSLDC ESCPFAKHHRLPSVSRVNKRVVSTFELVHSDVWGPCPIVSKSSFKYFATFVDDYSRVT WRYLMKNHSKLFFIFCAFCAEIKTQFNVFVHKLRIDNAKEYFFDKFQSYMIQNGILHQ SSYIDTPSQNRVAERKINISLSYDSQGEEDDLLVYTITHSVNTTDILATDPAPAQPPI VHVYSKRPEAQTTCPLPVPSPSDLVSNDHEPSLHLPIALRKGKCQCTYPISSFVSYDH LSFSSGSFVASLDSISIPKTVHEALSHPGWRAAMVEEMVALDGNCTWDSVDLPAGKKA IGCKWVLAVKVDPNGSVASLVAKGYAQTYSIDYFVTFSPVAKLTFVRLFISMVATYDW PLHQLDIKNAFLHGDLQDEVYMEQPLGLVAQGEYGKVCHLQKCLYGLKQSPRAWFGKF SEVVQEFGMKKSKCDHSVFYKQSEAGIILLVVYVDDIVITGSDTADGELFEDSEKYRG LVGKLNYLTVTRPDIAYSVSVVNQFMSDPTINHWTDLKQILCYLKGAPGCGLFYGNHG HTNIECFSNADWASSKSDRRSTTRYCVFIGGNLVLWKSKKQNVVSRSSAKSEYKAMAQ TVCEAVFMYQLLSEVGLKSFLPAKLLCDNQAALHIASNPVFHERNKHIEIDCHFVREK IQHKFISTRYVKTEDQLGDIFTNALNGPQVDYIRSKLGMINIYAPA" mobile_element complement(24076219..24076298) /note="source:CACAO_M_E5899_F5_scaffold_2 20750 20821" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24079507..24079685) /note="source:CACAO_Again_on_E14_scaffold_1 11060 11247" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(24080008..24080104) /note="source:CACAO_Again_on_E14_scaffold_1 10455 10551" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(24081481..24081832) /note="source:CACAO_Again_on_E14_scaffold_1 1 359" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(24083903..24086837) /note="source:CACAO_M_E12256_F312_scaffold_3 24 2959" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24086838..24088954) /note="source:CACAO_M_E1096_F15_scaffold_1 719 2836" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(24103530..24105034) /locus_tag="TCM_024271" /note="dbxref CacaoGD:Thecc1EG024271" mRNA complement(join(24103530..24104194,24104483..24104639, 24104860..24105034)) /locus_tag="TCM_024271" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013376t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(24103559..24104194,24104483..24104530)) /locus_tag="TCM_024271" /note="paralog of Thecc1EG013376t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08969.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B5G7" /translation="MGCLLCGHSDNHHGTKVPFNAHTINQFYNTLDIENDEYDQFVNG DINLDEVLRSLSILGTEWQVHKGVVISFKANAMDNDYKVWYHFVAMKLLLVKYLSDVT KDRAILLYAIVTKKFIDIGQLIFKNIIMSARSPPNGLWYPSLITALCCQARVVWSPNE ELPHPKIPYGGGIIHRFHMCEKTAIGEVHWLHLNHSDIPRISPCLNEWIGLSAAWTTK LGVSKPLKT" mobile_element 24108339..24128529 /note="source:CACAO_M_E43672_F60_scaffold_5 1 20191" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24130762..24132276) /note="source:CACAO_M_E33977_F20_scaffold_4 14870 16541" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24131993..24137139 /note="source:CACAO_Mutator_E1410_scaffold_6 5 5060" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(24137379..24137424) /note="source:scaffold_9_CACTA_0922 7585 7630" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24137560..24142202) /note="source:CACAO_M_E33977_F20_scaffold_4 5399 9950" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24141906..24142476 /note="source:scaffold_1_CACTA_0009 13257 13830" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24145418..24145498) /note="source:CACAO_M_E5899_F5_scaffold_2 20739 20818" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 24146898..24148182 /locus_tag="TCM_024279" /note="dbxref CacaoGD:Thecc1EG024279" mRNA join(24146898..24147456,24147645..24148182) /locus_tag="TCM_024279" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.56 coverage" CDS join(24147298..24147456,24147645..24147809) /locus_tag="TCM_024279" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08970.1" /translation="MWHVTHIRLARPISTFPSPSELSSSLSQKLNHTINFITLIYPLY LWQGKKPKYFWVKKRRIYPSRAFWRRKMQGKGEPASSQLGVARGRRVVAAMAAAPVAA PKAAR" mobile_element 24150069..24150152 /note="source:CACAO_Mutator_E1149_scaffold_5 4683 4770" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(24150275..24154190) /note="source:scaffold_5_CACTA_0613 6928 10768" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24154132..24154155) /note="source:INTACT584_F15_scaffold_3-int 3135 3154" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24154156..24157004 /note="source:CACAO_M_E43675_F15_scaffold_5 1 2820" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24157005..24157997) /note="source:scaffold_5_CACTA_0613 5947 6937" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24157989..24159865) /note="source:scaffold_5_CACTA_0613 3589 5486" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24159934..24160849) /note="source:scaffold_5_CACTA_0613 2656 3580" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24160896..24162472) /note="source:INTACT209_F33_scaffold_5-int 9384 10958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24162573..24169583) /note="source:INTACT209_F33_scaffold_5-int 2330 9348" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24169589..24178741 /note="source:CACAO_M_E3634_F15_scaffold_1 1602 10730" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(24194631..24195673) /locus_tag="TCM_024288" /note="dbxref CacaoGD:Thecc1EG024288" mRNA complement(join(24194631..24194923,24195016..24195126, 24195216..24195249,24195333..24195511,24195594..24195673)) /locus_tag="TCM_024288" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS complement(join(24194759..24194923,24195016..24195126, 24195216..24195249,24195333..24195511,24195594..24195644)) /locus_tag="TCM_024288" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08971.1" /translation="MSEIPLIFLGQYLSNAPKFDDHQILCHGHDFVDGVASVAATVVA TIAATAIDASVGTGFDHGCSLTLGIFTIAGTRRLGRCPFHGAVQLAWSLDLKSESCPP RFSFVWFCYVLVFSEAEIVSIWKAYSTGIGGPLVRRRDPSAPRAVWRNAGETQMHALG IHGVYRPIHYETLIHLLAS" mobile_element complement(24196294..24196553) /note="source:CACAO_M_E4396_F76_scaffold_2 5386 5682" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24196548..24196628 /note="source:scaffold_4_CACTA_0493 2244 2328" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24196646..24198091 /note="source:CACAO_M_E58324_F9_scaffold_9 1 1457" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24198076..24198465 /note="source:scaffold_4_CACTA_0493 2342 2725" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24198458..24198524 /note="source:scaffold_4_CACTA_0493 11229 11298" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24198493..24198554 /note="source:scaffold_4_CACTA_0493 11239 11301" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24198529..24198892) /note="source:CACAO_M_E157_F76_scaffold_1 4141 4497" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24198893..24201714 /note="source:CACAO_M_S_E66051_F15_scaffold_5 1 2799" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24201820..24205558) /note="source:CACAO_M_S_E119572_F76_scaffold_9 251 3992" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24208027..24208287 /note="source:scaffold_2_CACTA_0262 7824 8112" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24208274..24210367 /note="source:CACAO_Mariner_E180_scaffold_6 6249 8289" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(24210026..24210742) /note="source:CACAO_M_E58324_F9_scaffold_9 8583 9216" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24210716..24215414) /note="source:INTACT597_F267_scaffold_2-int 8976 13713" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24212672..24217482) /note="source:scaffold_2_CACTA_0262 6619 11404" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24217284..24217727) /note="source:CACAO_M_E58324_F9_scaffold_9 8803 9216" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24218210..24218905) /note="source:scaffold_2_CACTA_0262 5420 6123" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24218905..24219376 /note="source:CACAO_M_E1841_F5_scaffold_1 16193 16668" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24219382..24220555 /note="source:CACAO_M_S_E66061_F14_scaffold_5 1 1174" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24224576..24224936) /note="source:INTACT570_F260_scaffold_5-int 2913 3273" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24224988..24225086 /note="source:CACAO_M_E84179_F14_scaffold_10 6979 7079" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24225004..24225101) /note="source:CACAO_M_S_E64832_F14_scaffold_5 12581 12678" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24225021..24227301) /note="source:scaffold_6_CACTA_0702 9366 11641" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24227305..24228027) /note="source:CACAO_M_E65313_F266_scaffold_9 1877 2581" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24228024..24229632) /note="source:CACAO_M_E65313_F266_scaffold_9 1 1637" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24229633..24230406) /note="source:scaffold_6_CACTA_0702 8598 9371" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24230410..24233082 /note="source:CACAO_M_E43689_F345_scaffold_5 1 2673" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24233083..24233473) /note="source:scaffold_3_CACTA_0388 8070 8460" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24235084..24235730) /note="source:CACAO_M_S_E64832_F14_scaffold_5 3666 4311" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24235220..24235901 /note="source:CACAO_M_E1841_F5_scaffold_1 3290 4001" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24236051..24236121) /note="source:INTACT146F_F14_scaffold_2-int 13455 13525" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24236620..24237802 /note="source:CACAO_M_E58601_F7_scaffold_9 4486 5670" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24242783..24242853 /note="source:scaffold_5_CACTA_0596 16463 16533" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24243760..24243946 /note="source:CACAO_M_S_E6055_F310_scaffold_2 15565 15750" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24246367..24246435) /note="source:CACAO_M_E43428_F369_scaffold_5 1289 1354" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24254078..24254841) /note="source:INTACT524_F2_scaffold_3-int 1 807" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 24256697..24259661 /locus_tag="TCM_024293" /note="dbxref CacaoGD:Thecc1EG024293" mRNA join(24256697..24256958,24259255..24259661) /locus_tag="TCM_024293" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.65 coverage" CDS join(24256853..24256958,24259255..24259382) /locus_tag="TCM_024293" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08972.1" /translation="MLILGLLDGDKAKKMRIAIINTGTRRNINGGGGNSDIEESKQIF KVIKLIGSEIDDPCSWWKAVHFMYLPNLLFTWL" mobile_element complement(24265763..24265849) /note="source:CACAO_M_E42395_F3_scaffold_5 3183 3271" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 24270407..24271315 /locus_tag="TCM_024295" /note="dbxref CacaoGD:Thecc1EG024295" mRNA join(24270407..24270632,24270817..24271315) /locus_tag="TCM_024295" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.30 coverage" CDS join(24270516..24270632,24270817..24271023) /locus_tag="TCM_024295" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08973.1" /translation="MNLLTAAMVHKTKPEQVQKRENGQIENSQNITIRVQKLKRFAQN SSALLKPHKKVTPLPHNEETNGISKPISSLIIISSSPSKDKPSNRPISNPHILVPELW IFIKM" mobile_element complement(24272566..24275264) /note="source:CACAO_M_E72795_F345_scaffold_10 1 2661" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24276284..24276557 /note="source:CACAO_M_S_E85177_F5_scaffold_7 18125 18751" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24276558..24277883 /note="source:scaffold_4_CACTA_0490 11750 13096" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24277884..24278532 /note="source:CACAO_M_S_E85177_F5_scaffold_7 18752 20246" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24281677..24291920 /note="source:CACAO_M_E43698_F13_scaffold_5 1 10244" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24296838..24298155 /note="source:CACAO_M_S_E89272_F5_scaffold_8 8377 9689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24300878..24303022 /note="source:CACAO_M_S_E31635_F14_scaffold_3 14796 16882" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24303023..24305969) /note="source:CACAO_M_E22999_F228_scaffold_4 1 2942" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24305970..24306338 /note="source:CACAO_M_E58819_F24_scaffold_9 15915 16282" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24306352..24306532 /note="source:CACAO_M_S_E89272_F5_scaffold_8 6730 6903" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24317556..24319634) /note="source:CACAO_M_S_E118676_F14_scaffold_9 9064 12227" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24319635..24322628) /note="source:CACAO_M_S_E53049_F7_scaffold_5 1 2998" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24322629..24324697) /note="source:INTACT288_F14_scaffold_2-int 4695 8265" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24327229..24327353) /note="source:CACAO_M_E22348_F13_scaffold_3 3953 4082" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24327310..24331187 /note="source:INTACT1793F_F14_scaffold_10-int 5567 9450" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24331155..24332152) /note="source:CACAO_M_S_E15589_F14_scaffold_2 8898 9932" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24331188..24331823) /note="source:INTACT612_F91_scaffold_5-int 163 4705" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 24334041..24334855 /note="source:CACAO_M_E58601_F7_scaffold_9 8812 9622" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24337098..24337213) /note="source:INTACT642F_F365_scaffold_5-int 2257 2364" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(24340676..24341522) /locus_tag="TCM_024299" /note="dbxref CacaoGD:Thecc1EG024299" mRNA complement(24340676..24341522) /locus_tag="TCM_024299" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS complement(24340971..24341342) /locus_tag="TCM_024299" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08974.1" /translation="MDHSYDGFSCITAGAAAAAAISASSTVDASFRSGYDNDSSPFLG LDPIPGAHYHHHCSLKFDPKILIKFLLIFKDYIELDICEGGNQESQDKGGKTSTTRTV IKMELKAVFLYVLQLLQGYYL" mobile_element complement(24341324..24341406) /note="source:CACAO_M_E5899_F5_scaffold_2 20741 20811" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24346580..24346689) /note="source:CACAO_Mariner_E229_scaffold_9 1586 1691" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 24346787..24346812 /note="source:scaffold_3_CACTA_0382 3320 3342" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24346813..24349914 /note="source:CACAO_M_E43704_F15_scaffold_5 1 3102" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24352953..24352999 /note="source:INTACT296_F13_scaffold_9-int 13200 13246" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24353000..24353060 /note="source:scaffold_3_CACTA_0382 1877 1970" /mobile_element_type="transposon:TIR/CACTA" gene complement(24353315..24354895) /locus_tag="TCM_024300" /note="dbxref CacaoGD:Thecc1EG024300" mRNA complement(join(24353315..24353627,24354250..24354895)) /locus_tag="TCM_024300" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS complement(join(24353484..24353627,24354250..24354399)) /locus_tag="TCM_024300" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08975.1" /translation="MAPKRSREEKGRSPTTLAKKQKCPREDPLIIHFPSREERKIFHE EYATSKNKAKFLDKNILARMGYEYNAKANDWIKKDGAQDMVQVEQPVPEIPLA" mobile_element complement(24363408..24366009) /note="source:CACAO_M_S_E5978_F319_scaffold_2 1 2643" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24376747..24382914 /note="source:INTACT569_F259_scaffold_5-int 1 6168" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24385726..24387948 /note="source:scaffold_1_CACTA_0009 1630 4643" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24387839..24387983) /note="source:scaffold_1_CACTA_0009 12876 13034" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24387894..24392064 /note="source:CACAO_Mutator_E161_scaffold_1 1 4183" /mobile_element_type="transposon:TIR/Mutator" mobile_element 24391825..24392386 /note="source:scaffold_1_CACTA_0009 8889 9399" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24392138..24392516 /note="source:CACAO_Mutator_E161_scaffold_1 5158 5533" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(24392499..24394280) /note="source:CACAO_M_E58819_F24_scaffold_9 21537 23250" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24392786..24395505 /note="source:INTACT405F_F91_scaffold_4-int 302 3054" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(24395506..24398489) /note="source:CACAO_M_E43710_F7_scaffold_5 1 2974" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24398492..24399823 /note="source:INTACT39F_F22_scaffold_1-int 9390 10736" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24399817..24399959 /note="source:CACAO_Mutator_E161_scaffold_1 5517 5659" /mobile_element_type="transposon:TIR/Mutator" mobile_element 24400064..24402934 /note="source:CACAO_Mutator_E161_scaffold_1 5657 8538" /mobile_element_type="transposon:TIR/Mutator" mobile_element 24402935..24405769 /note="source:CACAO_M_E43709_F15_scaffold_5 1 2835" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24405770..24407005 /note="source:scaffold_1_CACTA_0009 11839 13070" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24406999..24408357 /note="source:scaffold_1_CACTA_0009 12379 13841" /mobile_element_type="transposon:TIR/CACTA" gene 24410091..24416319 /locus_tag="TCM_024308" /note="dbxref CacaoGD:Thecc1EG024308" mRNA join(24410091..24410189,24410554..24410659, 24410758..24410777,24410869..24411117,24415936..24416319) /locus_tag="TCM_024308" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS join(24410591..24410659,24410758..24410777, 24410869..24411115) /locus_tag="TCM_024308" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08976.1" /translation="MYAFFHGDLSKEMYMKLLPGYAKLVFFNLSNEAIDKIKQSVNVH LKYLGPHHYFLGLELSGSTQGICGKMKYVLDVIADISFSVAKLATSLMEQYLKLTNAD GKLLLEPSS" mobile_element complement(24415184..24415672) /note="source:scaffold_8_CACTA_0859 15975 16468" /mobile_element_type="transposon:TIR/CACTA" gene 24421314..24427375 /locus_tag="TCM_024311" /note="dbxref CacaoGD:Thecc1EG024311" mRNA join(24421314..24421748,24421821..24422108, 24422368..24422426,24422522..24422781,24423165..24423234, 24424558..24424655,24424759..24424860,24425528..24425653, 24425752..24425822,24426447..24426739,24426847..24427375) /locus_tag="TCM_024311" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(24422715..24422781,24423165..24423234, 24424558..24424655,24424759..24424860,24425528..24425653, 24425752..24425822,24426447..24426739,24426847..24427036) /locus_tag="TCM_024311" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08977.1" /translation="MVFEHSNNERTSVFMALEDEAHGMTSTCGFGNVYAPNDEQERVA FWKNRQDGLLFKVDFDNEFDSVSWDFLDLVLRMMGLRQGYPLSQLLFNLVVEVFSALM YRAVNHQLIKGLEPNGILPSLGNPSKASGIWKNITMPLSGAYDFSFFVVDEMVVKKVG SLEDFGNWNGDEGTWNIEVKWPNLNASITYLTRLLNEGTTLAKSKTNKNVVIWSKLLV GFLKFNIDGSSRGCLEDSGIKGILRNKFRDMIVLFSKAIGIFYSNKVELLAVSEAAIM SLVKQTCNVLAKVDRWQINHVPRSSNNEADFSAKERVLRPSNLLSISDFTAIQEIDQN IKQV" mobile_element 24428037..24431010 /note="source:CACAO_M_E43710_F7_scaffold_5 1 2974" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24431073..24431655) /note="source:INTACT413_F209_scaffold_13-int 9021 9604" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(24431654..24434206) /note="source:CACAO_M_E35778_F7_scaffold_5 1 2565" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24435108..24435988) /note="source:INTACT622_F276_scaffold_7-int 6755 7628" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 24435989..24438595 /note="source:CACAO_M_E43715_F144_scaffold_5 1 2607" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24438596..24441125) /note="source:INTACT622_F276_scaffold_7-int 4277 6759" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(24441139..24442393) /note="source:INTACT622_F276_scaffold_7-int 6374 7628" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 24442396..24444823 /note="source:INTACT622_F276_scaffold_7-int 1229 3655" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 24447778..24448099 /note="source:INTACT622_F276_scaffold_7-int 3651 3971" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 24448095..24448247 /note="source:INTACT622_F276_scaffold_7-int 2585 2737" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(24448245..24449436) /note="source:INTACT622_F276_scaffold_7-int 1190 1784" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(24449449..24449708) /note="source:INTACT622_F276_scaffold_7-int 7033 7294" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 24451728..24454743 /note="source:CACAO_M_E43479_F273_scaffold_5 1 2976" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24454963..24456718) /note="source:CACAO_M_E69048_F3_scaffold_9 1 1738" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24460104..24468121 /note="source:INTACT685_F13_scaffold_5-int 1 8018" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24472234..24473705) /note="source:INTACT459_F220_scaffold_4-int 6922 8042" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 24473690..24473708 /note="source:CACAO_M_S_E15173_F4_scaffold_2 5841 5935" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(24473709..24473778) /note="source:CACAO_M_E10603_F306_scaffold_2 3007 3076" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24473779..24476574 /note="source:CACAO_M_S_E66098_F244_scaffold_5 1 2796" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24476575..24479463) /note="source:CACAO_M_E22186_F143_scaffold_3 12740 15611" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24479462..24483150) /note="source:CACAO_M_S_E119572_F76_scaffold_9 280 3983" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24483151..24483286 /note="source:CACAO_M_E57385_F197_scaffold_9 1 121" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(24483278..24483509) /note="source:CACAO_M_E12105_F316_scaffold_3 5297 5518" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(24484250..24486351) /locus_tag="TCM_024315" /note="dbxref CacaoGD:Thecc1EG024315" mRNA complement(join(24484250..24484643,24485571..24485909, 24486023..24486351)) /locus_tag="TCM_024315" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01027323001" /inference="alignment:exonerate- protein:2:ricco:27751.m000168" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040699t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033618001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5188t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5188t3" mRNA complement(join(24484250..24484643,24485571..24485912, 24486023..24486351)) /locus_tag="TCM_024315" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:27751.m000168" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040699t1" /inference="similar to AA sequence:Phytozome:GSVIVT01027323001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5188t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5188t3" CDS complement(join(24484569..24484643,24485571..24485909, 24486023..24486307)) /locus_tag="TCM_024315" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG040699t1" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 2" /protein_id="EOY08979.1" /db_xref="Phytozome:GSVIVT01033618001" /db_xref="TAIR:AT3G56970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IHR7" /translation="MCALTPFPVCEWPLDSPINHIEQISYTEIFEDLLRFTSTLPPIQ LDRSPSCSGDSGNNPIVLKKLNHNARERDRRKKINSLYTSLRSLLPLSEQTRLSIPAT ISRVLKYIPELQAHVERLVQKKEEILSRQEEFSCDQENKRKGSSSFAISVSRVSEREV VVQISTFRAFETPLSHVLFNLEEDGLFLTEASCFESFGGRVFYNLHFQVERTYNLEGV VLNEKLLSLYEKRK" CDS complement(join(24484569..24484643,24485571..24485912, 24486023..24486307)) /locus_tag="TCM_024315" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG040699t1" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1" /protein_id="EOY08978.1" /db_xref="Phytozome:GSVIVT01027323001" /db_xref="TAIR:AT3G56970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IHR7" /translation="MCALTPFPVCEWPLDSPINHIEQISYTEIFEDLLRFTSTLPPIQ LDRSPSCSGDSGNNPIVLKKLNHNARERDRRKKINSLYTSLRSLLPLSEQTKRLSIPA TISRVLKYIPELQAHVERLVQKKEEILSRQEEFSCDQENKRKGSSSFAISVSRVSERE VVVQISTFRAFETPLSHVLFNLEEDGLFLTEASCFESFGGRVFYNLHFQVERTYNLEG VVLNEKLLSLYEKRK" gene 24486549..24501835 /locus_tag="TCM_024316" /note="dbxref CacaoGD:Thecc1EG024316" mRNA join(24486549..24486721,24490271..24490286, 24492626..24492641,24494335..24494383,24495851..24496037, 24496629..24496868,24497171..24497363,24498564..24498908, 24499394..24499549,24501255..24501835) /locus_tag="TCM_024316" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.30 coverage" CDS join(24486702..24486721,24490271..24490286, 24492626..24492641,24494335..24494383,24495851..24496037, 24496629..24496868,24497171..24497363,24498564..24498908, 24499394..24499549,24501255..24501289) /locus_tag="TCM_024316" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08980.1" /translation="MPSTRLRMRVNKHEIYEVFAKIILYNYIGTYKFIFLNALQSKNK AGLIDGTIVKLDVNSQDYDPWIQCNAIVLSWLTNVLAKEIQSRTTHANTTYKSSNQSR SLGGRCMIGSDQSNSNLVLAATIGDTRSSTPSPGIKAQQQQILQVLAALGVGNARSLQ SASQVGATIANTTNQNDLPSRRPIGVGSVRDGLYYLEPIRKGKALMASNMRHIEMWHR RLGHLPMNRLSFVGELSVNVRESTAPSITVTIDYSVVTGKKARQIPQKLADYDFALPP SLTSSSSTYSPTPKANSTVYPLSQFISYSRFSRDHNAFLATIISTNEPTNFHQAIKHA HWRDANAKEISALEENKTWVLNDVTVTGNDPERIVKLKRYLDKKFRIKDLGKLKYFLG IEVANSPSSIVLSQQISVMICSRWVF" mobile_element complement(24493067..24493203) /note="source:CACAO_M_S_E4413_F3_scaffold_1 545 702" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(24501678..24503586) /locus_tag="TCM_024317" /note="dbxref CacaoGD:Thecc1EG024317" mRNA complement(24501678..24503586) /locus_tag="TCM_024317" /product="Sulfotransferase 2A, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s19290.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044771t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s19290.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03819t00001" CDS complement(24502094..24503227) /locus_tag="TCM_024317" /note="paralog of Thecc1EG044771t1" /codon_start=1 /product="Sulfotransferase 2A, putative" /protein_id="EOY08981.1" /db_xref="Phytozome:POPTR_0003s19290.1" /db_xref="TAIR:AT5G07010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q940P4" /translation="MQLIIEYIRERYSVVSQPKTTLFKARSRKKERMPISAYTISSMG IPHFKKTPSTNVAEEDQQEKMDKECEELVLSLPKEKGWRTPYLYKFQGFWCQPKEIQA IISFQKHFQARATDVILATIPKSGTTWIKALVFATMNRQRFGISNCHPLLTSNPHDLV PFLEYKLYADNEIPDLSDLPNPRLFATHVPFASLQNSIKNNSDRRIVYLCRNPFDTFI SSWHFINKVRSDSLPPLPLEEAFDMYCNGVVGFGPFWEHMLGYWKQSLERPKNVLFLK YDDMKKDIISHLMVLAKFLGLPFSVAEEKEGVIEEIAKLCSFDNLKDLEVNNSGKAIK NFENKHLFRKGEVGDWVNYLSPLMVERLSKVIEEKFGASGLKF" mobile_element 24505443..24505895 /note="source:INTACT135F_F90_scaffold_2-int 13542 13999" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(24507177..24507341) /note="source:CACAO_M_E9571_F13_scaffold_2 9737 9901" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24508175..24508248 /note="source:CACAO_M_E43348_F5_scaffold_5 3690 3765" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24509268..24510688) /note="source:CACAO_M_E43916_F9_scaffold_5 3 1421" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24510788..24513619 /note="source:INTACT771_F78_scaffold_10-int 1 2842" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24513928..24514047 /note="source:scaffold_5_CACTA_0591 6353 6474" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24513947..24514106 /note="source:CACAO_M_E43348_F5_scaffold_5 5164 5323" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 24514145..24516623 /locus_tag="TCM_024319" /note="dbxref CacaoGD:Thecc1EG024319" mRNA join(24514145..24514738,24515682..24516623) /locus_tag="TCM_024319" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040477t1" /note="quality class is medium-utrpoor, express is medium, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.55 coverage" CDS 24516186..24516440 /locus_tag="TCM_024319" /note="paralog of Thecc1EG040477t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08982.1" /translation="MMSRDPRVEKGNEVASEKEELPLSVRDHLNIFLSVRDQLHIFQQ EMQVLIDNLMQRTFDLEAAILSNKKILAEIELKVDELMKK" mobile_element 24516499..24517176 /note="source:CACAO_M_S_E5046_F335_scaffold_1 17047 17721" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24516943..24517273) /note="source:CACAO_M_E52576_F245_scaffold_7 3322 3632" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24517164..24517341 /note="source:CACAO_M_S_E5046_F335_scaffold_1 17794 17971" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24517338..24517379 /note="source:CACAO_M_S_E5046_F335_scaffold_1 18094 18135" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 24517551..24518728 /locus_tag="TCM_024320" /note="dbxref CacaoGD:Thecc1EG024320" mRNA join(24517551..24517846,24517928..24518728) /locus_tag="TCM_024320" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.44 coverage" CDS join(24517832..24517846,24517928..24518179) /locus_tag="TCM_024320" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08983.1" /translation="MTLLRQLLLLLLPCSRFLTFHGSLLSNLHRFSQVNLDFHAFVHL FAKSFVLSYYFTLKPSKAFPQYFLSLVGHFREKKRDFSQEFESF" gene complement(24521642..24525786) /locus_tag="TCM_024321" /note="dbxref CacaoGD:Thecc1EG024321" mRNA complement(join(24521642..24521854,24524579..24525786)) /locus_tag="TCM_024321" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024668t1" /inference="similar to AA sequence:Phytozome:Glyma14g16190.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.16 coverage" CDS complement(24524598..24525359) /locus_tag="TCM_024321" /note="paralog of Thecc1EG024668t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08984.1" /db_xref="Phytozome:Glyma14g16190.1" /translation="MYDRISNLELEIQWLLEEMQQDIFSEQTWNTIKGLRKDLWQLLK ASKRVWHQKSHIKWYLKGDRNMCFFHNVALARRRANFISKISHQGRDLECPSEIKDRN VNHFEGLYGFKPICQLKELNCGLSKLEGHTVVVLEIPFIESEIWEVINSCDGIKASEP DGFNFCFVKRQWSTIKENVMNFVIEFETIGSMAKGVNASFITLIPKCEIPSSLNDYRS INLVGCLYKIISKALALRLRKEIDEVVGINQFAFI" mobile_element 24527296..24529950 /note="source:INTACT475_F17_scaffold_8-int 1 2625" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24530156..24530771 /note="source:INTACT475_F17_scaffold_8-int 2899 3384" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24532653..24535458 /note="source:CACAO_M_E43916_F9_scaffold_5 6689 9501" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24533042..24535722) /note="source:INTACT190_F166_scaffold_7-int 3757 6426" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(24535756..24536426) /locus_tag="TCM_024322" /note="dbxref CacaoGD:Thecc1EG024322" mRNA complement(24535756..24536426) /locus_tag="TCM_024322" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(24535771..24536223) /locus_tag="TCM_024322" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08985.1" /translation="MMATLGSMRQTTGAISSGRQQQRFNDDSNGLHIQQWKSRLFSVY VGNLNLAITWRQLIRAFHDFGMVNDAFIWKPCQMLKNNKRPTSAFVRHRLAEEMRKAI MQGNGMMLVGRWIIVNKAIFMKFEAQSKTANFAEKGQCKENLQRGPAL" gene 24537735..24540652 /locus_tag="TCM_024323" /note="dbxref CacaoGD:Thecc1EG024323" mRNA join(24537735..24538323,24538823..24538913, 24539235..24539630,24539778..24540463,24540559..24540652) /locus_tag="TCM_024323" /product="Gag-pol polyprotein-like protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045311t1" /inference="similar to AA sequence:Phytozome:GSVIVT01037631001" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.58 coverage" mobile_element 24537878..24537976 /note="source:CACAO_M_S_E31635_F14_scaffold_3 3186 3271" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24538913..24546538 /note="source:INTACT110_F35_scaffold_5-int 1 7626" /mobile_element_type="retrotransposon:LTR/Copia" CDS join(24539322..24539630,24539778..24540463, 24540559..24540622) /locus_tag="TCM_024323" /note="paralog of Thecc1EG045311t1" /codon_start=1 /product="Gag-pol polyprotein-like protein" /protein_id="EOY08986.1" /db_xref="Phytozome:GSVIVT01037631001" /translation="MTTPNITHQPPPVFDGSNYGVWAVKMKTYLKGYNLWNAVEQDTE PQAPRENAPVAQVKQYEEEIAKKFRALSFIQSAISEDIFNRIMECETAKAAWTKLQEE YLKEVRVVEKILNSVPGKFEPTITSLLQSKDLPDISITEIISALQAAELRISARDEAL EEKAFLAKGKGKAKVEAFIKKNYKDKDKKIAEYGQSSNKKNKFNLCSFCTKRNHTDDY CWFRPDAKCKICSQSGHTDKVCKNRTIEDKPAQTNESLELTEEVLFMAQSNSESDFRN CEWLLDSGSSRHIALFESVFVDLDKNYRSKVRIKNGGYLQAYGIGKVRIQSSTGHRQS LQNLQPLKCISDDYSNEE" gene 24540715..24541860 /locus_tag="TCM_024324" /note="dbxref CacaoGD:Thecc1EG024324" mRNA 24540715..24541860 /locus_tag="TCM_024324" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012997t1" /inference="similar to AA sequence:Phytozome:GSVIVT01034745001" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00122t00003" CDS 24540752..24541237 /locus_tag="TCM_024324" /note="paralog of Thecc1EG012997t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08987.1" /db_xref="Phytozome:GSVIVT01034745001" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AWN8" /translation="MLDKLPKLSNNASICSVCQLGKISRKPFPLSSSNRTKSKLELIH SDIGGPLSEESLNGSKFYLLFIDDMTRWSWIFFMKFKSEVFTLFKNFKTRVEFETGHR IKTLRTDNGGEYTSNEFTQFLNQQGIAHQLTAPYTHQQNGVSERKNRIVMDMSKCLLY H" gene 24543511..24547754 /locus_tag="TCM_024325" /note="dbxref CacaoGD:Thecc1EG024325" mRNA join(24543511..24543711,24544857..24546022, 24546742..24546790,24546942..24547754) /locus_tag="TCM_024325" /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019111t1" /inference="similar to AA sequence:frave:gene24361" /note="quality class is medium-expresste, express is weak, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.15 coverage" CDS join(24544860..24546022,24546742..24546790, 24546942..24547007) /locus_tag="TCM_024325" /note="dbxref frave:gene24361; paralog of Thecc1EG019111t1" /codon_start=1 /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /protein_id="EOY08988.1" /db_xref="TAIR:AT4G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BMR0" /translation="MLNLDGSLNRCKARLVAKGYNQLPGVDYEETFAPVARYDTIRLL LALAAGLKWNVYHLDIKSAFLNGILEEEIYIEQPEGFELSSGENKVYKLHKALYGLKQ APRRWYSRINDHLIHRGFVKSQNEAILYTLESGNKLLLIVSLYVDDLLVTGNCEQALQ NFKSHMQTKFEMSDLGLMRYFLGLEVHHLRTDIWLSQQNYISKVLKKFQMSDCKSVST PSIANNKLCADSSNQLEDPSAYRRLIVCLLYICASRPDIQFSVAFLSRFMQAPTDQHM IAAKRIIRYLKKTEFYGIHYTKSVEFALCGYTNSDFARNSEDAKSTSSYLFTLGNGPF SWNSHKQSVVAQSLAESEYVAAAEAANQALWLRKLLADIKFEQKFPTDLFIHNKSFKS HEGMVFYSFHLKAGRTQRFECQELSKKLLSLYE" mobile_element 24547550..24547622 /note="source:scaffold_9_CACTA_0929 9962 10039" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24551756..24552630 /note="source:CACAO_M_E11098_F15_scaffold_2 6238 7091" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24552643..24563362 /note="source:CACAO_M_E43725_F15_scaffold_5 1 10720" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24563257..24563373) /note="source:CACAO_M_S_E50808_F245_scaffold_4 5049 5165" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24565307..24565413) /note="source:INTACT65_F13_scaffold_1-int 15345 15457" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24569305..24571866) /note="source:CACAO_M_S_E173_F215_scaffold_1 577 4432" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24572044..24572886) /note="source:scaffold_1_CACTA_0016 6873 7701" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24573111..24573528 /note="source:scaffold_10_CACTA_0137 6357 6772" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24573654..24573746) /note="source:scaffold_3_CACTA_0396 889 981" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24573748..24574965) /note="source:INTACT528_F17_scaffold_6-int 5004 6232" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 24577415..24578481 /locus_tag="TCM_024327" /note="dbxref CacaoGD:Thecc1EG024327" mRNA 24577415..24578481 /locus_tag="TCM_024327" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage" CDS 24577753..24578049 /locus_tag="TCM_024327" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08989.1" /translation="MVVAGNRRYWGHRNSIIVGGTLSTTEPIEKSKGERIPLIGFSNP PPLPCRSSLILHLSPPPFFLPMLGALCRLLLQASIFLLAADRFCFKVCLLWVVM" gene complement(24579642..24607976) /locus_tag="TCM_024328" /note="dbxref CacaoGD:Thecc1EG024328" mRNA complement(join(24579642..24580156,24580711..24580782, 24580879..24580998,24581078..24581221,24581318..24581396, 24584194..24584291,24586884..24586922,24587002..24587052, 24587145..24587204,24587742..24587882,24587990..24588079, 24588206..24588412,24588970..24589146,24589227..24589430, 24589532..24589618,24589742..24589855,24590023..24590169, 24590355..24590441,24591391..24591495,24591631..24591822, 24591912..24591977,24592049..24592291,24593653..24593709, 24595042..24595203,24595288..24595347,24595434..24595502, 24595712..24595792,24596401..24596503,24596602..24596747, 24596897..24596977,24597053..24597120,24601374..24601455, 24601537..24601650,24603075..24603193,24604388..24604477, 24604565..24605007,24606007..24606260,24607743..24607976)) /locus_tag="TCM_024328" /product="Kinesin heavy chain, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033614001" /inference="similar to AA sequence:Phytozome:POPTR_0006s03910.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1348t5" CDS complement(join(24579929..24580156,24580711..24580782, 24580879..24580998,24581078..24581221,24581318..24581396, 24584194..24584291,24586884..24586922,24587002..24587052, 24587145..24587204,24587742..24587882,24587990..24588079, 24588206..24588412,24588970..24589146,24589227..24589430, 24589532..24589618,24589742..24589855,24590023..24590169, 24590355..24590441,24591391..24591495,24591631..24591822, 24591912..24591977,24592049..24592291,24593653..24593709, 24595042..24595203,24595288..24595347,24595434..24595502, 24595712..24595792,24596401..24596503,24596602..24596747, 24596897..24596977,24597053..24597120,24601374..24601455, 24601537..24601650,24603075..24603193,24604388..24604477, 24604565..24604688)) /locus_tag="TCM_024328" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Kinesin heavy chain, putative isoform 1" /protein_id="EOY08990.1" /db_xref="Phytozome:POPTR_0006s03910.1" /db_xref="TAIR:AT3G10180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SZX8" /translation="MERINVAVRTRPLSPEDAKTSPWRISANSIFIPNHATKFEFDRI FGEDCKTGEVYEARTKEIVAAAVRGFNGTVFAYGQTNSGKTHTMRGSAAEPGVIPLAV HDLFGIIQQDVDREFLLRMSYMEIYNEEIIDLLAPEHRKLQIHESIERGIYVAGLREE IVASPEQVLDFMEFGESHRHIGETNMNLHSSRSHTIFRMIIESRDRTEDGDGDTVNSC DAVRVSVLNLVDLAGSERAAKTGAEGVRLKEGSHINKSLMTLGTVIKKLSEGAESQGG HVPYRDSKLTRILQPALGGNANTAIICNITLAQIHADETKSSLQFASRALRVTNCARV NEILTDAALLKRQKKEIEELRAKLQGSRSEHLEKEILNLRNTLLQSELERERIALELE EEKKAQVERERVLQEQAKKIKNLSSMVLYSSRDESRDQFKKEKRRDTWCPGNLAREAL RESYSSIQSNSSAIKPTKSQRDMGPLLSFEELVDETEIADDLSKQDEDCKASVLEDCT LPDACALLHVTNRRKVLPRKKCSFVEDSELLELQTEYEDLLLNFETQRTMSEIKIDCL MRKLAEADSLHNMKHIESNDHSAFHANKTNCADKNIGLREFEAILVIKQLQEKIKLLE TEKSSSQQNLNSLVELATEQNICAREKFDELCEELHNAREEARVAHEKLAHSESGGRK DGDCDFAIELLKEVEDLISEAQESKEVVQSLSSLVDDAFQSFSAIIQEFLDFNGMMCQ NSVQQKIIIANTEKLHGCMRQRTSELENDKLLLHNQSVDLQKQVQELMEDAQNHAASL TALSEEHDWEKSQYLSQIHSFEKEISYLSSCSLAREKESLRKDFEKTKMKLQDTESKL KNTIQEKTKLEGEKAFAEREIKRLHGQKTLLERDISRRDSLAGRRRDSVFDRNSKMFD PKKAKALEQTMQEDYKKLEVLAFEMETTIASLEEELAAAHREKREAISRNEDLALAFE ALTKKFNITSSEMNALHEELSGLRLSLEQSNSNQQEMESSIKRLLAENEELAMQLTSS LLEMEEERAIQSAREKASIKAMEENTKLYNSEITSLSETLSEYFTVNGLLIATLGFLM IAFMVAIGQNSVGSFQVLIDWVASGFGLPDHVVMVMKELESCRKECNVLRERLIYFDE DATLEKNCSMQKSLQIDQLKNDVETADAKSKQSQQISKSNFEMLSLELQHAQEELSII KRERDDLSAKIGQLVAKSDLSDELQKLKNQLLDMSRERDKLVTQIEEQQSSLVEAEML KQDSNDVLMEAKVEVEELTSRLSCMEAKMHNDQVNNGKEMAKHRMRLRGTQAQLDALR YRYKQAVEESDIMNRKFEEASANLKERLASKGIEVLNLKKQLAAASGQ" mRNA complement(join(<24580131..24580156,24580711..24580782, 24580879..24580998,24581078..24581221,24581318..24581396, 24584194..24584291,24587742..24587882,24587990..24588079, 24588206..24588412,24588970..24589146,24589227..24589430, 24589532..24589618,24589742..24589855,24590023..24590169, 24590355..24590441,24591391..24591495,24591631..24591822, 24591912..24591977,24592049..24592291,24593653..24593709, 24595042..24595203,24595288..24595347,24595434..24595502, 24595712..24595792,24596401..24596503,24596602..24596747, 24596897..24596977,24597053..24597120,24601374..24601455, 24603075..24603193,24604388..24604477,24604565..24604802)) /locus_tag="TCM_024328" /product="Kinesin heavy chain, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033614001" /inference="similar to AA sequence:Phytozome:POPTR_0006s03910.1" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1348t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1348t5" mRNA complement(join(<24580131..24580156,24580711..24580782, 24580879..24580998,24581078..24581221,24581318..24581396, 24584194..24584291,24587742..24587882,24587990..24588079, 24588206..24588412,24588970..24589146,24589227..24589430, 24589532..24589618,24589742..24589855,24590023..24590169, 24590355..24590441,24591391..24591495,24591631..24591822, 24591912..24591977,24592049..24592291,24593653..24593709, 24595042..24595203,24595288..24595347,24595434..24595502, 24595712..24595792,24596401..24596503,24596602..24596747, 24596897..24596977,24597053..24597120,24601374..24601455, 24601537..24601650,24603075..24603193,24604388..24604477, 24604565..24604802)) /locus_tag="TCM_024328" /product="Kinesin heavy chain, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033614001" /inference="similar to AA sequence:Phytozome:POPTR_0006s03910.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1348t10; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1348t5" mRNA complement(join(<24580131..24580156,24580711..24580782, 24580879..24580998,24581078..24581221,24581318..24581396, 24584194..24584291,24587742..24587882,24587990..24588079, 24588206..24588412,24588970..24589146,24589227..24589430, 24589532..24589618,24589742..24589855,24590023..24590169, 24590355..24590441,24591391..24591495,24591631..24591822, 24591912..24591977,24592049..24592291,24593653..24593709, 24595042..24595203,24595288..24595347,24595434..24595502, 24595712..24595792,24596401..24596503,24596602..24596747, 24596897..24596977,24597053..24597120,24601374..24601650, 24603075..24603193,24604388..24604477,24604565..24604802)) /locus_tag="TCM_024328" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033614001" /inference="similar to AA sequence:Phytozome:POPTR_0006s03910.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1348t8; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1348t5" CDS complement(join(<24580133..24580156,24580711..24580782, 24580879..24580998,24581078..24581221,24581318..24581396, 24584194..24584291,24587742..24587882,24587990..24588079, 24588206..24588412,24588970..24589146,24589227..24589430, 24589532..24589618,24589742..24589855,24590023..24590169, 24590355..24590441,24591391..24591495,24591631..24591822, 24591912..24591977,24592049..24592291,24593653..24593709, 24595042..24595203,24595288..24595347,24595434..24595502, 24595712..24595792,24596401..24596503,24596602..24596747, 24596897..24596977,24597053..24597120,24601374..24601455, 24603075..24603193,24604388..24604477,24604565..24604688)) /locus_tag="TCM_024328" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Kinesin heavy chain, putative isoform 4" /protein_id="EOY08993.1" /db_xref="Phytozome:POPTR_0006s03910.1" /db_xref="TAIR:AT3G10180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SZX8" /translation="MERINVAVRTRPLSPEDAKTSPWRISANSIFIPNHATKFEFDRI FGEDCKTGEVYEARTKEIVAAAVRGFNGTVFAYGQTNSGKTHTMRGSAAEPGVIPLAV HDLFGIIQQRGIYVAGLREEIVASPEQVLDFMEFGESHRHIGETNMNLHSSRSHTIFR MIIESRDRTEDGDGDTVNSCDAVRVSVLNLVDLAGSERAAKTGAEGVRLKEGSHINKS LMTLGTVIKKLSEGAESQGGHVPYRDSKLTRILQPALGGNANTAIICNITLAQIHADE TKSSLQFASRALRVTNCARVNEILTDAALLKRQKKEIEELRAKLQGSRSEHLEKEILN LRNTLLQSELERERIALELEEEKKAQVERERVLQEQAKKIKNLSSMVLYSSRDESRDQ FKKEKRRDTWCPGNLAREALRESYSSIQSNSSAIKPTKSQRDMGPLLSFEELVDETEI ADDLSKQDEDCKASVLEDCTLPDACALLHVTNRRKVLPRKKCSFVEDSELLELQTEYE DLLLNFETQRTMSEIKIDCLMRKLAEADSLHNMKHIESNDHSAFHANKTNCADKNIGL REFEAILVIKQLQEKIKLLETEKSSSQQNLNSLVELATEQNICAREKFDELCEELHNA REEARVAHEKLAHSESGGRKDGDCDFAIELLKEVEDLISEAQESKEVVQSLSSLVDDA FQSFSAIIQEFLDFNGMMCQNSVQQKIIIANTEKLHGCMRQRTSELENDKLLLHNQSV DLQKQVQELMEDAQNHAASLTALSEEHDWEKSQYLSQIHSFEKEISYLSSCSLAREKE SLRKDFEKTKMKLQDTESKLKNTIQEKTKLEGEKAFAEREIKRLHGQKTLLERDISRR DSLAGRRRDSVFDRNSKMFDPKKAKALEQTMQEDYKKLEVLAFEMETTIASLEEELAA AHREKREAISRNEDLALAFEALTKKFNITSSEMNALHEELSGLRLSLEQSNSNQQEME SSIKRLLAENEELAMQLTSSLLEMEEERAIQSAREKASIKAMEENTKLYNSEITSLSE TLSEVMKELESCRKECNVLRERLIYFDEDATLEKNCSMQKSLQIDQLKNDVETADAKS KQSQQISKSNFEMLSLELQHAQEELSIIKRERDDLSAKIGQLVAKSDLSDELQKLKNQ LLDMSRERDKLVTQIEEQQSSLVEAEMLKQDSNDVLMEAKVEVEELTSRLSCMEAKMH NDQVNNGKE" CDS complement(join(<24580133..24580156,24580711..24580782, 24580879..24580998,24581078..24581221,24581318..24581396, 24584194..24584291,24587742..24587882,24587990..24588079, 24588206..24588412,24588970..24589146,24589227..24589430, 24589532..24589618,24589742..24589855,24590023..24590169, 24590355..24590441,24591391..24591495,24591631..24591822, 24591912..24591977,24592049..24592291,24593653..24593709, 24595042..24595203,24595288..24595347,24595434..24595502, 24595712..24595792,24596401..24596503,24596602..24596747, 24596897..24596977,24597053..24597120,24601374..24601455, 24601537..24601650,24603075..24603193,24604388..24604477, 24604565..24604688)) /locus_tag="TCM_024328" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Kinesin heavy chain, putative isoform 2" /protein_id="EOY08991.1" /db_xref="Phytozome:POPTR_0006s03910.1" /db_xref="TAIR:AT3G10180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SZX8" /translation="MERINVAVRTRPLSPEDAKTSPWRISANSIFIPNHATKFEFDRI FGEDCKTGEVYEARTKEIVAAAVRGFNGTVFAYGQTNSGKTHTMRGSAAEPGVIPLAV HDLFGIIQQDVDREFLLRMSYMEIYNEEIIDLLAPEHRKLQIHESIERGIYVAGLREE IVASPEQVLDFMEFGESHRHIGETNMNLHSSRSHTIFRMIIESRDRTEDGDGDTVNSC DAVRVSVLNLVDLAGSERAAKTGAEGVRLKEGSHINKSLMTLGTVIKKLSEGAESQGG HVPYRDSKLTRILQPALGGNANTAIICNITLAQIHADETKSSLQFASRALRVTNCARV NEILTDAALLKRQKKEIEELRAKLQGSRSEHLEKEILNLRNTLLQSELERERIALELE EEKKAQVERERVLQEQAKKIKNLSSMVLYSSRDESRDQFKKEKRRDTWCPGNLAREAL RESYSSIQSNSSAIKPTKSQRDMGPLLSFEELVDETEIADDLSKQDEDCKASVLEDCT LPDACALLHVTNRRKVLPRKKCSFVEDSELLELQTEYEDLLLNFETQRTMSEIKIDCL MRKLAEADSLHNMKHIESNDHSAFHANKTNCADKNIGLREFEAILVIKQLQEKIKLLE TEKSSSQQNLNSLVELATEQNICAREKFDELCEELHNAREEARVAHEKLAHSESGGRK DGDCDFAIELLKEVEDLISEAQESKEVVQSLSSLVDDAFQSFSAIIQEFLDFNGMMCQ NSVQQKIIIANTEKLHGCMRQRTSELENDKLLLHNQSVDLQKQVQELMEDAQNHAASL TALSEEHDWEKSQYLSQIHSFEKEISYLSSCSLAREKESLRKDFEKTKMKLQDTESKL KNTIQEKTKLEGEKAFAEREIKRLHGQKTLLERDISRRDSLAGRRRDSVFDRNSKMFD PKKAKALEQTMQEDYKKLEVLAFEMETTIASLEEELAAAHREKREAISRNEDLALAFE ALTKKFNITSSEMNALHEELSGLRLSLEQSNSNQQEMESSIKRLLAENEELAMQLTSS LLEMEEERAIQSAREKASIKAMEENTKLYNSEITSLSETLSEVMKELESCRKECNVLR ERLIYFDEDATLEKNCSMQKSLQIDQLKNDVETADAKSKQSQQISKSNFEMLSLELQH AQEELSIIKRERDDLSAKIGQLVAKSDLSDELQKLKNQLLDMSRERDKLVTQIEEQQS SLVEAEMLKQDSNDVLMEAKVEVEELTSRLSCMEAKMHNDQVNNGKE" CDS complement(join(<24580133..24580156,24580711..24580782, 24580879..24580998,24581078..24581221,24581318..24581396, 24584194..24584291,24587742..24587882,24587990..24588079, 24588206..24588412,24588970..24589146,24589227..24589430, 24589532..24589618,24589742..24589855,24590023..24590169, 24590355..24590441,24591391..24591495,24591631..24591822, 24591912..24591977,24592049..24592291,24593653..24593709, 24595042..24595203,24595288..24595347,24595434..24595502, 24595712..24595792,24596401..24596503,24596602..24596747, 24596897..24596977,24597053..24597120,24601374..24601389)) /locus_tag="TCM_024328" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 3" /protein_id="EOY08992.1" /db_xref="Phytozome:POPTR_0006s03910.1" /db_xref="TAIR:AT3G10180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SZX8" /translation="MEFGESHRHIGETNMNLHSSRSHTIFRMIIESRDRTEDGDGDTV NSCDAVRVSVLNLVDLAGSERAAKTGAEGVRLKEGSHINKSLMTLGTVIKKLSEGAES QGGHVPYRDSKLTRILQPALGGNANTAIICNITLAQIHADETKSSLQFASRALRVTNC ARVNEILTDAALLKRQKKEIEELRAKLQGSRSEHLEKEILNLRNTLLQSELERERIAL ELEEEKKAQVERERVLQEQAKKIKNLSSMVLYSSRDESRDQFKKEKRRDTWCPGNLAR EALRESYSSIQSNSSAIKPTKSQRDMGPLLSFEELVDETEIADDLSKQDEDCKASVLE DCTLPDACALLHVTNRRKVLPRKKCSFVEDSELLELQTEYEDLLLNFETQRTMSEIKI DCLMRKLAEADSLHNMKHIESNDHSAFHANKTNCADKNIGLREFEAILVIKQLQEKIK LLETEKSSSQQNLNSLVELATEQNICAREKFDELCEELHNAREEARVAHEKLAHSESG GRKDGDCDFAIELLKEVEDLISEAQESKEVVQSLSSLVDDAFQSFSAIIQEFLDFNGM MCQNSVQQKIIIANTEKLHGCMRQRTSELENDKLLLHNQSVDLQKQVQELMEDAQNHA ASLTALSEEHDWEKSQYLSQIHSFEKEISYLSSCSLAREKESLRKDFEKTKMKLQDTE SKLKNTIQEKTKLEGEKAFAEREIKRLHGQKTLLERDISRRDSLAGRRRDSVFDRNSK MFDPKKAKALEQTMQEDYKKLEVLAFEMETTIASLEEELAAAHREKREAISRNEDLAL AFEALTKKFNITSSEMNALHEELSGLRLSLEQSNSNQQEMESSIKRLLAENEELAMQL TSSLLEMEEERAIQSAREKASIKAMEENTKLYNSEITSLSETLSEVMKELESCRKECN VLRERLIYFDEDATLEKNCSMQKSLQIDQLKNDVETADAKSKQSQQISKSNFEMLSLE LQHAQEELSIIKRERDDLSAKIGQLVAKSDLSDELQKLKNQLLDMSRERDKLVTQIEE QQSSLVEAEMLKQDSNDVLMEAKVEVEELTSRLSCMEAKMHNDQVNNGKE" mobile_element 24597648..24600393 /note="source:INTACT67_F28_scaffold_2-int 1 2759" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 24598295..24600217 /locus_tag="TCM_024329" /note="dbxref CacaoGD:Thecc1EG024329" mRNA join(24598295..24598415,24598503..24598724, 24599263..24599528,24599634..24600217) /locus_tag="TCM_024329" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019894t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2346t2" CDS join(24598310..24598415,24598503..24598724, 24599263..24599528,24599634..24600095) /locus_tag="TCM_024329" /note="paralog of Thecc1EG019894t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08994.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AXU2" /translation="MDKLVAAVKVHMVPSKQIDEIETIQWKLSEMMNTLSNVSGSPRN RGKRTKVSVPKRYERVQDAKELENFRFNILKYFQAMHTESEDKVVMASMYLVGDAKLC WSSKFTDALSAIWTANVETPAPHTTVEEVEEELARMSYIRFLSALQAQLEKMKTEPQR SLMYVKVLLNEKTTKTMLDTRASDTFITSEEEKRCSLKINLTVATTDDFDFVLGLDFM TKAQVIPFPAASCLMFFGERSCVVLATILPKSGKKMISAIQFKKGIKKGEPSYVAMSI YKGENNRNPIHQEVKLVLEKFQNMMPEQLPRVLPPQQAVHHEIELLPRVKPPAKGPYR MAPPKLTELKKQLDKLI" mobile_element 24600390..24600497 /note="source:CACAO_M_E23512_F28_scaffold_4 473 575" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24600498..24600525) /note="source:CACAO_M_E44210_F112_scaffold_5 2760 2877" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(24600663..24600752) /note="source:scaffold_5_CACTA_0596 1749 1838" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24600690..24600760 /note="source:CACAO_M_S_E51240_F74_scaffold_4 2226 2296" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24604864..24605234) /note="source:scaffold_1_CACTA_0008 14054 14453" /mobile_element_type="transposon:TIR/CACTA" gene complement(24608637..24612921) /locus_tag="TCM_024330" /note="dbxref CacaoGD:Thecc1EG024330" mRNA complement(join(24608637..24609004,24609320..24609493, 24609983..24610144,24610222..24610330,24612167..24612273, 24612464..24612921)) /locus_tag="TCM_024330" /product="Haloacid dehalogenase-like hydrolase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033613001" /inference="similar to AA sequence:ricco:27751.m000176" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13913t1" mRNA complement(join(24608640..24608944,24609320..24609493, 24609983..24610144,24610222..24610330,24612167..24612273, 24612464..24612837)) /locus_tag="TCM_024330" /product="Haloacid dehalogenase-like hydrolase superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033613001" /inference="similar to AA sequence:ricco:27751.m000176" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00408t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13913t1" CDS complement(join(24608915..24608944,24609320..24609493, 24609983..24610144,24610222..24610330,24612167..24612273, 24612464..24612757)) /locus_tag="TCM_024330" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:27751.m000176" /codon_start=1 /product="Haloacid dehalogenase-like hydrolase superfamily protein isoform 2" /protein_id="EOY08996.1" /db_xref="TAIR:AT2G41250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZVB6" /translation="MALMATTRTKLCRLLTRTLRPGCSALNGSIRPDPFNCSFSSASS AAAMAPQREAMGLEVLGVKDYEDYRRSLYGEITHKALLVDAVGTLLAPSQPMAQIYRE IGEKYGVEYSEIEILNRYRRAYAQPWGRSRLRYVNDGRPFWQYIVSSSTGCSDSQYFE ELYNYYTTDKAWHLCDPEAEKVFKALRKAGVKVAVVSNFDTRLRPVLRALNCDHWFDA VAVSAEVEAEKPNPTIFLKACELLGIKPEDAVHVGDDRRNDIWGARDAGCDAWLWGSD VYSFKEVARRIGVQV" CDS complement(join(24608915..24609004,24609320..24609493, 24609983..24610144,24610222..24610330,24612167..24612273, 24612464..24612757)) /locus_tag="TCM_024330" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:27751.m000176" /codon_start=1 /product="Haloacid dehalogenase-like hydrolase superfamily protein isoform 1" /protein_id="EOY08995.1" /db_xref="TAIR:AT2G41250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZVB6" /translation="MALMATTRTKLCRLLTRTLRPGCSALNGSIRPDPFNCSFSSASS AAAMAPQREAMGLEVLGVKDYEDYRRSLYGEITHKALLVDAVGTLLAPSQPMAQIYRE IGEKYGVEYSEIEILNRYRRAYAQPWGRSRLRYVNDGRPFWQYIVSSSTGCSDSQYFE ELYNYYTTDKAWHLCDPEAEKVFKALRKAGVKVAVVSNFDTRLRPVLRALNCDHWFDA VAVSAEVEAEKPNPTIFLKACELLGIKPEDAVHVGDDRRNDIWGARDAGCDAWLWGSD VYSFKENLIWSEYLESLHDPPVLLMQVARRIGVQV" mobile_element 24613358..24618669 /note="source:INTACT502_F76_scaffold_5-int 1 5312" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 24620818..24621767 /locus_tag="TCM_024332" /note="dbxref CacaoGD:Thecc1EG024332" mRNA 24620818..24621767 /locus_tag="TCM_024332" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS 24621386..24621604 /locus_tag="TCM_024332" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY08997.1" /translation="MQKEKTKNLSLKTPPTKHPKKKPTDSKFTNKITSCQPIGLPDTH PYSNVNTRIVCCQHLGLKALDFICGIDG" mobile_element complement(24621597..24621752) /note="source:CACAO_hAT_E3863_scaffold_9 892 1064" /mobile_element_type="transposon:TIR/hAT" mobile_element 24621615..24622274 /note="source:CACAO_Again_on_S_E287_scaffold_10 1 681" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(24624426..24625242) /note="source:INTACT609_F90_scaffold_2-int 5834 6528" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 24625243..24626874 /note="source:INTACT1330F_F382_scaffold_8-int 1 1121" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24628049..24630418 /note="source:INTACT1330F_F382_scaffold_8-int 2208 4590" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24630680..24631838) /note="source:INTACT60_F127_scaffold_9-int 10072 11231" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24631939..24635484 /note="source:INTACT1330F_F382_scaffold_8-int 6027 9568" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24636059..24637527) /note="source:INTACT60_F127_scaffold_9-int 4463 5931" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24637628..24639697 /note="source:INTACT1232F_F375_scaffold_6-int 7584 10109" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24640614..24641806 /note="source:scaffold_5_CACTA_0584 8310 9499" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24641789..24641994 /note="source:CACAO_M_E24592_F195_scaffold_4 20770 20971" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24641813..24642935) /note="source:CACAO_M_S_E19828_F19_scaffold_3 7277 8400" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24643536..24643621 /note="source:INTACT319_F3_scaffold_1-int 4229 4311" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24643550..24646185) /note="source:CACAO_M_E52239_F256_scaffold_7 19810 22438" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24647297..24648063) /note="source:scaffold_9_CACTA_0943 3900 4670" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24647354..24648164 /note="source:CACAO_Again_on_E230_scaffold_10 137 920" /mobile_element_type="transposon:TIR/hAT" mobile_element 24648265..24648787 /note="source:CACAO_M_E56826_F244_scaffold_8 2013 2535" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24648665..24648833 /note="source:CACAO_on_E680_scaffold_9 5030 5200" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(24650313..24650757) /note="source:scaffold_9_CACTA_0938 970 1429" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24650885..24651014) /note="source:scaffold_8_CACTA_0851 2203 2332" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24651213..24651405) /note="source:CACAO_Again_on_E5_scaffold_1 2811 3005" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(24651555..24651822) /note="source:scaffold_9_CACTA_0938 970 1237" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24651950..24652079) /note="source:scaffold_8_CACTA_0851 2203 2332" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24652277..24652469) /note="source:CACAO_Again_on_E5_scaffold_1 2811 3005" /mobile_element_type="transposon:TIR/hAT" gene 24652665..24660848 /locus_tag="TCM_024333" /note="dbxref CacaoGD:Thecc1EG024333" mRNA join(24652665..24652920,24653097..24653195, 24653293..24653384,24654341..24654441,24655528..24655618, 24657309..24657479,24657586..24657744,24658078..24658170, 24659131..24659322,24659773..24659984,24660099..24660848) /locus_tag="TCM_024333" /product="Embryo sac development arrest 7, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s03690.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024339t1" /inference="similar to AA sequence:frave:gene27421" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5514t1" CDS join(24652788..24652920,24653097..24653195, 24653293..24653384,24654341..24654441,24655528..24655618, 24657309..24657479,24657586..24657744,24658078..24658125) /locus_tag="TCM_024333" /note="dbxref frave:gene27421; paralog of Thecc1EG024339t1" /codon_start=1 /product="Embryo sac development arrest 7, putative" /protein_id="EOY08998.1" /db_xref="TAIR:AT3G56990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M1J9" /translation="MANHGGKMKSVSINGVKMYTISSHLRSVAAWISLKKQRSLRKDK NHTERVELIQDLRFETATSKIKITPDGEFLIASGIYPPQVKVYELRQFSMKFERHLES EIIDFQVLADDYSKLAFLCADRSVNLHAKYGKHYSLRIPRMGRDIAYDCWSCDLLCAA SSPDLYRINLEQGEGMTSIEPTAGAINDICVFNDSGLMLLALDSTQIPAYFIPALGSV PKWCSSLESLTEELEEGGQTSIYDNYKFLTKEELEKLNLTNLIGTNLLRAYMHGFFID YRLYKKAKAFADPFAYETYIE" gene 24655838..24660848 /locus_tag="TCM_024334" /note="dbxref CacaoGD:Thecc1EG024334" mRNA join(24655838..24655888,24657326..24657338, 24657404..24657479,24657586..24657744,24658078..24658170, 24659131..24659322,24659773..24659984,24660099..24660774) /locus_tag="TCM_024334" /product="Embryo sac development arrest 7-like protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s03690.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024339t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033615001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00006t00001_C1; alternateUTRof:Thecc1EG024334t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5514t4; inference alignment:Newbler:10:TSA:cgbaL_g00119t00004" mRNA join(24655838..24655888,24657326..24657338, 24657404..24657479,24657586..24657744,24658078..24658170, 24659131..24659227,24659773..24659984,24660099..24660774) /locus_tag="TCM_024334" /product="Embryo sac development arrest 7-like protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s03690.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024339t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033615001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00006t00005_C1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5514t4" mRNA join(24655839..24655946,24657309..24657479, 24657586..24657744,24658078..24658170,24659131..24659322, 24659773..24659984,24660099..24660848) /locus_tag="TCM_024334" /product="Embryo sac development arrest 7-like protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s03690.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024339t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033615001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5514t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5514t4" CDS join(24659131..24659322,24659773..24659984, 24660099..24660429) /locus_tag="TCM_024334" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG024339t1" /codon_start=1 /product="Embryo sac development arrest 7-like protein isoform 1" /protein_id="EOY08999.1" /db_xref="Phytozome:GSVIVT01033615001" /db_xref="TAIR:AT3G56990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B6N4" /translation="MKRKLPKVKVNQDLAERILENEEAENEKKDNDGNENKKTSKRKK NALSTEIFKDDRFTQMFENKDYEIDEQSQEFLALHPMASKKQPSLVEEHFEPVMDNED QITSDSDVSEASQSSDDFPVNHKGKRKKSQGPRMYEVKDKRHAEAFWNNVSLAKEDSL PMGERVKALQGDQRVSGLPSGVKLGSGGSRQISFISRSSAKNKEDEEKLTRREKRGVQ LLGLKPDRSMFGGRGRGRGRGRKGRR" CDS join(24659131..24659322,24659773..24659984, 24660099..24660429) /locus_tag="TCM_024334" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG024339t1" /codon_start=1 /product="Embryo sac development arrest 7-like protein isoform 1" /protein_id="EOY09000.1" /db_xref="Phytozome:GSVIVT01033615001" /db_xref="TAIR:AT3G56990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B6N4" /translation="MKRKLPKVKVNQDLAERILENEEAENEKKDNDGNENKKTSKRKK NALSTEIFKDDRFTQMFENKDYEIDEQSQEFLALHPMASKKQPSLVEEHFEPVMDNED QITSDSDVSEASQSSDDFPVNHKGKRKKSQGPRMYEVKDKRHAEAFWNNVSLAKEDSL PMGERVKALQGDQRVSGLPSGVKLGSGGSRQISFISRSSAKNKEDEEKLTRREKRGVQ LLGLKPDRSMFGGRGRGRGRGRKGRR" CDS join(24659192..24659227,24659773..24659984, 24660099..24660429) /locus_tag="TCM_024334" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG024339t1" /codon_start=1 /product="Embryo sac development arrest 7-like protein isoform 3" /protein_id="EOY09001.1" /db_xref="Phytozome:GSVIVT01033615001" /db_xref="TAIR:AT3G56990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B6N4" /translation="MKKLKMKRKTMMDYEIDEQSQEFLALHPMASKKQPSLVEEHFEP VMDNEDQITSDSDVSEASQSSDDFPVNHKGKRKKSQGPRMYEVKDKRHAEAFWNNVSL AKEDSLPMGERVKALQGDQRVSGLPSGVKLGSGGSRQISFISRSSAKNKEDEEKLTRR EKRGVQLLGLKPDRSMFGGRGRGRGRGRKGRR" mobile_element complement(24661458..24661657) /note="source:scaffold_9_CACTA_0943 3438 3638" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24661646..24662112) /note="source:scaffold_8_CACTA_0851 2734 3196" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24661658..24661687) /note="source:CACAO_Again_on_E5_scaffold_1 4599 4820" /mobile_element_type="transposon:TIR/hAT" gene 24661670..24744949 /locus_tag="TCM_024335" /note="dbxref CacaoGD:Thecc1EG024335" mRNA join(24661670..24662542,24662913..24663005, 24663183..24663327,24663412..24663522,24663617..24663699, 24663782..24663839,24664463..24664591,24664722..24665310, 24667942..24668169) /locus_tag="TCM_024335" /product="Nucleolar essential protein-related isoform 1" /inference="alignment:exonerate- protein:2:ricco:27751.m000174.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032188t3" /inference="similar to AA sequence:ricco:27751.m000174" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00119t00004" mRNA join(24661874..24662542,24662913..24663005, 24663183..24663327,24663412..24663522,24663617..24663699, 24663782..24664591) /locus_tag="TCM_024335" /product="Nucleolar essential protein-related isoform 3" /inference="alignment:exonerate- protein:2:ricco:27751.m000174.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032188t3" /inference="similar to AA sequence:ricco:27751.m000174" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc75t93; inference alignment:Newbler:10:TSA:cgbaL_g00119t00004; inference alignment:Velvet:11:TSA:cacao3vel5sc7Loc429t1" mRNA join(24662135..24662542,24662913..24663005, 24663183..24663327,24663412..24663522,24663617..24663699, 24663782..24663839,24664463..24664979,24718467..24718487, 24744773..24744808,24744866..24744949) /locus_tag="TCM_024335" /product="Nucleolar essential protein-related isoform 1" /inference="alignment:exonerate- protein:2:ricco:27751.m000174.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032188t3" /inference="similar to AA sequence:ricco:27751.m000174" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc7Loc420t7_G2; alternateUTRof:Thecc1EG024335t1; inference alignment:Newbler:10:TSA:cgbaL_g00119t00004; inference alignment:Velvet:11:TSA:cacao3vel5sc7Loc429t1" CDS join(24662258..24662542,24662913..24663005, 24663183..24663327,24663412..24663522,24663617..24663699, 24663782..24663839,24664463..24664542) /locus_tag="TCM_024335" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:27751.m000174; paralog of Thecc1EG032188t3" /codon_start=1 /product="Nucleolar essential protein-related isoform 1" /protein_id="EOY09002.1" /db_xref="TAIR:AT3G57000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M1J8" /translation="MVWPYAIKGKKRKTREEKYDREEDEEVEVEEKESAKRGSIEKPQ GEAPDEEEEEDESGAHELVGIPIAPSDQNTKKAGVIFVLEKASLEVAKVGKSFQLLNS DDHANFLRKNKKNPADYRPDIAHQALLAILDSPVNKAGRLQAVYVKTEKGVLFEVKPH VRIPRTYKRFSGIILQLLQQHKITAVGKRESLLRLIKNPATQYFPVNSRKIGFSYSSE KLVKMSKYVDAVGDDVNLVFVVGAMAHGKIETEYVDDFIAISGYPLSAAMCIARITEA LAEKWNIL" CDS join(24662258..24662542,24662913..24663005, 24663183..24663327,24663412..24663522,24663617..24663699, 24663782..24663839,24664463..24664542) /locus_tag="TCM_024335" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:27751.m000174; paralog of Thecc1EG032188t3" /codon_start=1 /product="Nucleolar essential protein-related isoform 1" /protein_id="EOY09003.1" /db_xref="TAIR:AT3G57000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M1J8" /translation="MVWPYAIKGKKRKTREEKYDREEDEEVEVEEKESAKRGSIEKPQ GEAPDEEEEEDESGAHELVGIPIAPSDQNTKKAGVIFVLEKASLEVAKVGKSFQLLNS DDHANFLRKNKKNPADYRPDIAHQALLAILDSPVNKAGRLQAVYVKTEKGVLFEVKPH VRIPRTYKRFSGIILQLLQQHKITAVGKRESLLRLIKNPATQYFPVNSRKIGFSYSSE KLVKMSKYVDAVGDDVNLVFVVGAMAHGKIETEYVDDFIAISGYPLSAAMCIARITEA LAEKWNIL" CDS join(24662258..24662542,24662913..24663005, 24663183..24663327,24663412..24663522,24663617..24663699, 24663782..24663895) /locus_tag="TCM_024335" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:27751.m000174; paralog of Thecc1EG032188t3" /codon_start=1 /product="Nucleolar essential protein-related isoform 3" /protein_id="EOY09004.1" /db_xref="TAIR:AT3G57000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H941" /translation="MVWPYAIKGKKRKTREEKYDREEDEEVEVEEKESAKRGSIEKPQ GEAPDEEEEEDESGAHELVGIPIAPSDQNTKKAGVIFVLEKASLEVAKVGKSFQLLNS DDHANFLRKNKKNPADYRPDIAHQALLAILDSPVNKAGRLQAVYVKTEKGVLFEVKPH VRIPRTYKRFSGIILQLLQQHKITAVGKRESLLRLIKNPATQYFPVNSRKIGFSYSSE KLVKMSKYVDAVGDDVNLVFVVGAMAHGKIETEYVDDFIASKFHILCVWFFVRLCYGI " gene complement(24666893..24685602) /locus_tag="TCM_024336" /note="dbxref CacaoGD:Thecc1EG024336" mRNA complement(join(24666893..24667285,24667392..24667556, 24668302..24668336,24668405..24668409,24668561..24668613, 24668720..24668788,24669200..24669319,24669416..24669487, 24670488..24670578,24671665..24671765,24678156..24678248, 24681100..24681351,24684687..24684792,24685530..24685602)) /locus_tag="TCM_024336" /product="Embryo sac development arrest 7, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024339t1" /inference="similar to AA sequence:Phytozome:Glyma09g30130.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5633t5" CDS complement(join(24667401..24667556,24668302..24668336, 24668405..24668409,24668561..24668613,24668720..24668788, 24669200..24669319,24669416..24669487,24670488..24670578, 24671665..24671765,24678156..24678248,24681100..24681351, 24684687..24684792,24685530..24685579)) /locus_tag="TCM_024336" /note="paralog of Thecc1EG024339t1" /codon_start=1 /product="Embryo sac development arrest 7, putative" /protein_id="EOY09005.1" /db_xref="Phytozome:Glyma09g30130.1" /db_xref="TAIR:AT3G56990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M1J9" /translation="MPIETPQGLASASASPHRSLALVESHSHVVARTSGALKSYLRRY FTEHLPPEWKTREEKYDREEDEEVEVEEKESAKRGSIEKPQGKAPDEEEEEDESGAHE LVGIPIAPNDQITKKAGVIFVLEKASLEVAKVGKSFQLLNSDDYANFLRKNKKNPVDY RPDISHQVLADDYSKLAFLCADHSVNLHAKYGERYSLRIPRMGRDIAYDCWSCDLLCA ASSPYLYRINLEQGRFLSSLNIQSPALNVVSRRFLWNHAPWISCLWCEDGAVECFDMR MRSSIGRINAVSPAGDADEEVTAIDFVENGGFLMGVGSSAGKVMIYDLRSSSPIRVKD HMYDCHIVKIWDPETGEGMTSIKPTGGAINDICVFNDSGLMLLALDSSQIPAYFIPAL GPVPKWCS" gene complement(24674651..24676114) /locus_tag="TCM_024338" /note="dbxref CacaoGD:Thecc1EG024338" mRNA complement(join(24674651..24675737,24675825..24676114)) /locus_tag="TCM_024338" /product="Kinesin heavy chain, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024328t1" /inference="similar to AA sequence:ricco:27751.m000175" /note="quality class is medium, express is none, homology is paralog strong, intron is none, protein is utrpoor_complete" CDS complement(join(24675637..24675737,24675825..24675948)) /locus_tag="TCM_024338" /note="dbxref ricco:27751.m000175; paralog of Thecc1EG024328t1" /codon_start=1 /product="Kinesin heavy chain, putative" /protein_id="EOY09006.1" /db_xref="TAIR:AT3G10180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SZX8" /translation="MERIHVVVRTRPLSQEDAKTSPWKISANSIFIPNHSTKFEFDRI FGQDCKTEEVYEVRTKEIVAAAVRGFNGAI" mobile_element complement(24678299..24680763) /note="source:CACAO_M_E71058_F389_scaffold_10 1 2447" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24681803..24682884 /note="source:CACAO_Again_on_E230_scaffold_10 28 1105" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(24682251..24682956) /note="source:CACAO_Again_on_E5_scaffold_1 5311 5880" /mobile_element_type="transposon:TIR/hAT" gene 24682698..24697404 /locus_tag="TCM_024339" /note="dbxref CacaoGD:Thecc1EG024339" mRNA join(24682698..24683150,24684101..24684180, 24684627..24684722,24685543..24685642,24686182..24686360, 24687454..24687610,24687787..24687885,24687983..24688074, 24689114..24689214,24690301..24690391,24691390..24691448, 24691558..24691678,24692087..24692155,24692262..24692314, 24692466..24692574,24693936..24694106,24694213..24694371, 24694705..24694797,24695675..24695866,24696317..24696528, 24696643..24697404) /locus_tag="TCM_024339" /product="Embryo sac development arrest 7" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033615001" /inference="similar to AA sequence:Phytozome:GSVIVT01033615001" /note="quality class is strong, express is medium, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5679t4" CDS join(24683138..24683150,24684101..24684180, 24684627..24684722,24685543..24685642,24686182..24686360, 24687454..24687610,24687787..24687885,24687983..24688074, 24689114..24689214,24690301..24690391,24691390..24691448, 24691558..24691678,24692087..24692155,24692262..24692314, 24692466..24692574,24693936..24694106,24694213..24694371, 24694705..24694797,24695675..24695866,24696317..24696528, 24696643..24696973) /locus_tag="TCM_024339" /codon_start=1 /product="Embryo sac development arrest 7" /protein_id="EOY09007.1" /db_xref="Phytozome:GSVIVT01033615001" /db_xref="TAIR:AT3G56990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M1J9" /translation="MTQNGSEQITLVKVQKLCLKTGIRSTSTPRTWWGFSWTAYERGT VTQLYTYLRGEMFGEVSPEKLMLSLAGFRSAFGVMSAYRDVAAVVTGSMGVPVESFCC SSPRPQLPAYHAKLGSFISSSFFSLQPPSHNHALPTASLSPQAPRPYSFLAEILHRKG RRKNMANHGGKMKSVSINGVKMYTISSHLRSVAAWISLKKQRSLRKDKNHTERVELIQ DLRFETATSKIKITPDGEFLIASGIYPPQVKVYELRQFSMKFERHLESEIIDFQVLAD DYSKLAFLCADRSVNLHAKYGKHYSLRIPRMGRDIAYDCWSCDLLCAASSPDLYRINL EQGRFLSSLNTQSPALNVVSRSMLHGLVVCGGEDGAVECFDMRMRSSIGRINAVSPAG DADEEVTAIDFDENGGFLMGVGSSAGKVLIYDLRSSSPIRVKDHMYGKPILDIKWHST LNFERPKLITTDCHIVKIWDPETGEGMTSIEPTAGAINDICVFNDSGLMLLALDSSQI PAYFIPALGPVPKWCSSLESLTEELEEGGQTSIYDNYKFLTKEELEKLNLTNLIGTNL LRAYMHGFFIDYRLYKKAKALADPFAYETYIEQRKQEKLDAERRNRITMKRKLPKVKV NQDLAERILENEEAENEKKDNDGNESKKTSKRKKNALSTEIFKDDRFTQMFENKDYEI DEQSQEFLALHPMASKKQPSLVEEHFEPVMDNKDQITSDSDVSEASQSSDGFPVNHKS KRKKSQGPRMYEVKDKRHAEAFWNNVSLAKEDSLPMGERVKALQDDQRVSGLPSGVKL GSGGSRQISFISRSSAKNKEDEEKLTRREKRGVQLLGLKPDRSMFGGRGRGRGRGRRG RR" mobile_element complement(24683203..24683702) /note="source:INTACT300_F7_scaffold_5-int 5361 5856" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24683803..24684503 /note="source:CACAO_M_E35176_F7_scaffold_5 11470 12163" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24684604..24684830 /note="source:CACAO_M_E35811_F12_scaffold_5 16690 16916" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24684931..24685648 /note="source:CACAO_M_E35811_F12_scaffold_5 16925 17641" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24698697..24701685 /note="source:CACAO_M_E43734_F143_scaffold_5 1 2989" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(24699891..24737283) /locus_tag="TCM_024341" /note="dbxref CacaoGD:Thecc1EG024341" mRNA complement(join(24699891..24700242,24730192..24730553, 24731491..24731595,24731695..24731799,24731904..24732008, 24732108..24732212,24732312..24732484,24732564..24732620, 24732720..24732824,24732924..24733028,24733128..24733232, 24733574..24733678,24733779..24733883,24733983..24734088, 24734799..24734903,24735052..24735108,24735208..24735312, 24735413..24735517,24735617..24735721,24736030..24736134, 24736492..24736548,24736648..24736752,24737064..24737283)) /locus_tag="TCM_024341" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete" mobile_element complement(24702293..24703152) /note="source:CACAO_M_E49885_F60_scaffold_7 851 1710" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24703152..24705788 /note="source:CACAO_M_E33213_F12_scaffold_4 8120 10702" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24705789..24705986) /note="source:CACAO_M_S_E83372_F14_scaffold_6 3691 3886" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24706152..24709144) /note="source:CACAO_M_S_E5270_F7_scaffold_1 1 2978" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24709253..24710118) /note="source:CACAO_M_E71671_F17_scaffold_10 9376 10261" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(24710235..24717232) /locus_tag="TCM_024342" /note="dbxref CacaoGD:Thecc1EG024342" mRNA complement(join(24710235..24710490,24711198..24711739, 24717169..24717232)) /locus_tag="TCM_024342" /product="Strictosidine synthase-like 2, putative" /inference="alignment:exonerate- protein:2:ricco:28094.m000178" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024345t1" /inference="similar to AA sequence:ricco:28094.m000178" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(join(24710282..24710490,24711198..24711693)) /locus_tag="TCM_024342" /note="dbxref ricco:28094.m000178; paralog of Thecc1EG024345t1" /codon_start=1 /product="Strictosidine synthase-like 2, putative" /protein_id="EOY09009.1" /db_xref="TAIR:AT2G41290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SLG8" /translation="MKYEQESKQVRVVLNNLSFPNGVALSNGGSFLVFAETTKCRILR YWLNTSKAETLETFAQLPGFPDNIIRSPRGGFWVAMHSRRDKILAWILSFPRLGNALV RLPIDVTKAYLVLSKYRGSGLAMTLSEDGEILETIEDKNGNKISEVHEKDGNLWIGSI DMPFVVHSTKHRDLSTYIEGTKHSLKCGYSLLMSSWLNSNSNLCEPYDVLRVRGTRKP RRRAIVTNPRGTDLRR" mobile_element complement(24715336..24715520) /note="source:scaffold_6_CACTA_0702 16 185" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24723630..24723809) /note="source:scaffold_6_CACTA_0702 4461 4643" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24724406..24724450) /note="source:scaffold_6_CACTA_0702 3885 3930" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24724981..24725107) /note="source:scaffold_6_CACTA_0702 3354 3480" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(24730252..24730553,24731491..24731595, 24731695..24731799,24731904..24732008,24732108..24732212, 24732312..24732484,24732564..24732620,24732720..24732824, 24732924..24733028,24733128..24733232,24733574..24733678, 24733779..24733883,24733983..24734088,24734799..24734903, 24735052..24735108,24735208..24735312,24735413..24735517, 24735617..24735721,24736030..24736134,24736492..24736548, 24736648..24736752,24737064..24737235)) /locus_tag="TCM_024341" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09008.1" /translation="MGDLLGSPRVVPPFSVGFWIVLGSAAGGGEGSCALLAQDMSGAI IPALMHRIPSELRRSAAGGGEGSCALLAQDMSGAIIPALMHRIPSELRSSAVGGGEGS CALLAQDMSGSAAGGGEGSCALLAQDMSGAIIPALMHRIPSELRSSAAGGGEGSCALL AQDMSGAIIPALMHRIPSELRSSAAGGGEGSCALLAQDMSGAIIPALMHRIPSELRSS AAGGGEGSCALLAQDMSGAIIPALMHRIPSELRSSAAGGGEGSCALLAQDMSGSAAGG GEGSCALLAQGMSGAIIPALMHRIPSELRSSAAGGAGGVLCIVGAGHVGCDHTSTNAP DPIRTPQLGGGGRGGVLCIVGAGHVGCDHTSTNAPDPIRTPQLGGGGRGGVLCIVGAG HVGCDHTSTNAPDPIRTPQLGGGGRGGVLCIVGAGHVGCDHTSTNAPDLIRTPQLGGG GRGGVFCIVGAGHVGCDHTSTNAPDLIRTLQLGGGGRGGVFRIVGAGHVGCDHTSTNA PDPIRTPPLGGGGRGRVLCIVGVGHVGMGDLLGSPRVAPPFSVGFWIVFGLAAGGGEG SCALLAQDMSGAIIPALMHRIPSELRSSAAGGGEGSCALLAQDMSGAIIPALMHRIPS ELRSSAAGGGEGSCALLAQDMSGAIIPALMHRIPSELRSSAAGGGEGSCALLAQDMSG AIIPALMHRIPSELRSSAAGGGEGSCALLAQDMSGAIIPALMRRIPSELRRSTPKTEK VDPQHSIAVNHITLFFKKSVVEQPSSSKLWQLEVVPIVGAIGPQSMAFDLLGEGPYVG ISDGRIIRWQENEQLWINFTITSRLRYVSATYIV" mobile_element 24730958..24731351 /note="source:CACAO_M_E35176_F7_scaffold_5 10216 10611" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 24737538..24741958 /locus_tag="TCM_024343" /note="dbxref CacaoGD:Thecc1EG024343" mRNA join(24737538..24737767,24737950..24738041, 24739060..24739160,24740220..24740292,24740397..24740555, 24740889..24740981,24741831..24741958) /locus_tag="TCM_024343" /product="Embryo sac development arrest 7" /inference="alignment:exonerate- protein:2:ricco:32657.m000014.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024333t1" /inference="similar to AA sequence:Phytozome:Glyma09g30130.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00205t00001" CDS join(24737635..24737767,24737950..24738041, 24739060..24739160,24740220..24740292,24740397..24740555, 24740889..24740963) /locus_tag="TCM_024343" /note="paralog of Thecc1EG024333t1" /codon_start=1 /product="Embryo sac development arrest 7" /protein_id="EOY09010.1" /db_xref="Phytozome:Glyma09g30130.1" /db_xref="TAIR:AT3G56990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S1A4" /translation="MANHGGKMKSVSINGVKMYTISSHLRSVAAWLSLKKQRSLRKDK SIYPPQVKVYELRQFSMKFERHLESEIIDFQVLADDYSKLAFLCADRSVNLHAKYGEH YSLRIPSQIPAYFIPALGPVPKWCSSLESLTEELEEGGQTSIYDNYKFLTKEELEKLN LTNLIGTNLLRAYMHGFFIDYRLYKKAKALADPFAYETYIEQRKQEKLEA" gene 24741546..24775330 /locus_tag="TCM_024344" /note="dbxref CacaoGD:Thecc1EG024344" mRNA join(24741546..24741665,24741831..24742684, 24743042..24743133,24743242..24743405,24743490..24743604, 24743694..24743775,24743859..24743916,24744541..24744616, 24744874..24745162,24775251..24775330) /locus_tag="TCM_024344" /product="Nucleolar essential protein-related" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g21290.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032188t3" /inference="similar to AA sequence:ricco:27751.m000174" /note="quality class is strong, express is medium, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.42 coverage" CDS join(24742400..24742684,24743042..24743133, 24743242..24743405,24743490..24743604,24743694..24743775, 24743859..24743916,24744541..24744616,24744874..24744931) /locus_tag="TCM_024344" /note="dbxref ricco:27751.m000174; paralog of Thecc1EG032188t3" /codon_start=1 /product="Nucleolar essential protein-related" /protein_id="EOY09011.1" /db_xref="TAIR:AT3G57000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M1J8" /translation="MVRPYAIKGKKRKMREEKYDREEDEEVEVEEKESAKRGSIEKPQ GEAPDEEEEEDESGAHELVGIPIAPNDQNTKKAGVIFVLEKASLEVAKVGKSFKLLNS DDHANSCEKIRRILPITDLTLLISAPFLPQALLAILDSPINKAGRLQAVYVKTEKGVL FVVKPHVRIPRTYKRFSGIILQLLQQHKITAVGKRESLLRLIKNPVTQYFPVNSRKIG GFSYSSEKLVKMNKYVDAVGDDVNLVFVVGAMAHGKTETEYVDDFIAISGYPLSAATC VARITEALAEKWNILIGFLGVKLNVVQGLTIMS" mobile_element complement(24746716..24746786) /note="source:CACAO_M_S_E90022_F9_scaffold_8 3100 3170" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24767208..24768720 /note="source:CACAO_M_S_E66116_F17_scaffold_5 1 1513" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(24769432..24771520) /locus_tag="TCM_024345" /note="dbxref CacaoGD:Thecc1EG024345" mRNA complement(join(24769432..24769562,24769800..24770341, 24771450..24771520)) /locus_tag="TCM_024345" /product="Strictosidine synthase-like 2, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s03720.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024342t1" /inference="similar to AA sequence:ricco:28094.m000178" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(join(24769465..24769562,24769800..24770295)) /locus_tag="TCM_024345" /note="dbxref ricco:28094.m000178; paralog of Thecc1EG024342t1" /codon_start=1 /product="Strictosidine synthase-like 2, putative" /protein_id="EOY09012.1" /db_xref="TAIR:AT2G41290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SLG8" /translation="MKYEQESKQVRVVLNNLSFPNGVALSNGGSFLVFAETTKCRILR YWLNTSKAETLETFAQLPGFPDNIIRSPRGGFWVAMHSRRDKILAWILSFPRLGNALV RLPIDVTKAYLVLSKYRGSGLAMTLSEDGEILETIEDKNGNKISEVHEKDGNLWIGSI DMPFVEDMSDGAISISLKWFLYKLQDICIKIKGGAWV" mobile_element complement(24771283..24771901) /note="source:CACAO_MITE_S12_scaffold_1 220 835" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(24771902..24772282) /note="source:CACAO_PIF_E31_scaffold_2 1 396" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(24774792..24774843) /note="source:INTACT39F_F22_scaffold_1-int 18316 18370" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24779749..24781358) /note="source:CACAO_M_E53135_F19_scaffold_8 4701 6321" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24780789..24782333 /note="source:scaffold_8_CACTA_0860 9477 11011" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24782381..24782786 /note="source:scaffold_8_CACTA_0860 10998 11405" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24782825..24782935 /note="source:scaffold_10_CACTA_0130 3038 3147" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24782950..24783786 /note="source:scaffold_4_CACTA_0491 2497 3095" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24789215..24789941) /note="source:scaffold_9_CACTA_0932 1932 2660" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24790095..24790154 /note="source:CACAO_M_S_E101631_F270_scaffold_9 8556 8616" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(24792509..24793483) /note="source:scaffold_9_CACTA_0932 1684 2660" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(24793639..24793763) /note="source:CACAO_M_S_E101631_F270_scaffold_9 7102 7232" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 24801534..24801572 /note="source:CACAO_M_S_E1495_F60_scaffold_1 4353 4391" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24802761..24803572 /note="source:CACAO_M_S_E145445_F22_scaffold_10 2 815" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24803565..24804292 /note="source:CACAO_M_E22186_F143_scaffold_3 12740 13466" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24804290..24805086 /note="source:INTACT598_F89_scaffold_2-int 9608 10435" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24807884..24808855 /note="source:CACAO_M_E22348_F13_scaffold_3 8359 9335" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24808856..24809416 /note="source:CACAO_M_S_E89272_F5_scaffold_8 11722 12279" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24809506..24810022 /note="source:CACAO_M_S_E89272_F5_scaffold_8 12274 12796" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24810003..24811035 /note="source:CACAO_M_S_E89272_F5_scaffold_8 13086 14118" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24811032..24814220 /note="source:CACAO_M_E45234_F22_scaffold_6 800 3993" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24814389..24816787 /note="source:CACAO_M_E5326_F22_scaffold_2 23268 25634" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24818363..24818379 /note="source:CACAO_M_E12105_F316_scaffold_3 1 206" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(24818380..24818537) /note="source:CACAO_M_S_E66657_F76_scaffold_5 8319 8486" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24818538..24828816 /note="source:CACAO_M_E43744_F324_scaffold_5 1 10279" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(24827739..24841017) /locus_tag="TCM_024350" /note="dbxref CacaoGD:Thecc1EG024350" mRNA complement(join(24827739..24827946,24837538..24838438, 24838831..24839094,24840268..24841017)) /locus_tag="TCM_024350" /product="Calcium-dependent phosphotriesterase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s03740.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041183t1" /inference="similar to AA sequence:ricco:28094.m000175" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaB_g10059t00001" mobile_element 24828817..24829149 /note="source:CACAO_M_E44088_F76_scaffold_5 204 534" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24829680..24829901) /note="source:CACAO_M_S_E66657_F76_scaffold_5 7785 8006" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24829902..24831743 /note="source:CACAO_M_S_E101707_F15_scaffold_9 1 1841" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24831744..24832218) /note="source:CACAO_M_E57079_F15_scaffold_8 2619 3093" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24832514..24833581) /note="source:CACAO_M_E12385_F15_scaffold_3 1 1054" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24833582..24833697 /note="source:CACAO_M_E57329_F88_scaffold_8 741 860" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 24833696..24836131 /note="source:CACAO_M_E44088_F76_scaffold_5 943 3387" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24836083..24836339) /note="source:INTACT733_F316_scaffold_2-int 291 559" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 24836123..24836709 /note="source:CACAO_M_E44088_F76_scaffold_5 4847 5475" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA complement(join(24837617..24838438,24840268..24840879)) /locus_tag="TCM_024350" /product="Calcium-dependent phosphotriesterase superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s03740.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041183t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s03740.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1107t2; inference alignment:Newbler:10:TSA:cgbaB_g10059t00001" CDS complement(join(24837871..24838438,24840268..24840545)) /locus_tag="TCM_024350" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG041183t1" /codon_start=1 /product="Calcium-dependent phosphotriesterase superfamily protein isoform 2" /protein_id="EOY09014.1" /db_xref="Phytozome:POPTR_0016s03740.1" /db_xref="TAIR:AT3G57030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q4V3D9" /translation="MNPKLKLALSSTTLVASISILLSYNILAPPAVPGSYHLHNAKTI RLDSAFGPESLAFDANGDGPYSGVADGRILKWQGDAVGWTDFAFTSSHRQFLPSIFTT DKTGRLLKYNKSSKEVTVLLRGLAFANGVALSKDSSFVLVAETTTCRILRLWLRGPNA GNVEVFSELPGFPDNIRRNKKGEFWVALHAKKGLVAKLALSYSLFGNTVLKLPLSFKQ LHSLFIGGKPHAIAVKLSENGEILEVLEDTEGKTMRFISEVEEKDGKLWIGSVMMPFV GIYHL" CDS complement(join(24837871..24838438,24838831..24839094, 24840268..24840545)) /locus_tag="TCM_024350" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28094.m000175; paralog of Thecc1EG041183t1" /codon_start=1 /product="Calcium-dependent phosphotriesterase superfamily protein isoform 1" /protein_id="EOY09013.1" /db_xref="TAIR:AT3G57030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q4V3D9" /translation="MNPKLKLALSSTTLVASISILLSYNILAPPAVPGSYHLHNAKTI RLDSAFGPESLAFDANGDGPYSGVADGRILKWQGDAVGWTDFAFTSSHREDCVRPFAP EMEHICGRPLGLRFDKKTGDLYIADAYFGLQVVGPAGGLATQLITEAEGQPLYFTNDM DIDELDDVIYFTDTSTSFRRRQFLPSIFTTDKTGRLLKYNKSSKEVTVLLRGLAFANG VALSKDSSFVLVAETTTCRILRLWLRGPNAGNVEVFSELPGFPDNIRRNKKGEFWVAL HAKKGLVAKLALSYSLFGNTVLKLPLSFKQLHSLFIGGKPHAIAVKLSENGEILEVLE DTEGKTMRFISEVEEKDGKLWIGSVMMPFVGIYHL" mobile_element complement(24841101..24842602) /note="source:INTACT405F_F91_scaffold_4-int 16583 18091" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 24843832..24844130 /note="source:INTACT157_F155_scaffold_1-int 117 393" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24844298..24844370 /note="source:INTACT375F_F353_scaffold_3-int 15113 15185" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24845013..24845252) /note="source:INTACT61_F128_scaffold_2-int 11642 11879" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24845019..24846701 /note="source:INTACT157_F155_scaffold_1-int 1621 3244" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24845278..24846766) /note="source:INTACT61_F128_scaffold_2-int 10156 11667" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24846885..24850103 /note="source:INTACT157_F155_scaffold_1-int 3955 7143" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24850158..24854328) /note="source:INTACT61_F128_scaffold_2-int 2856 7095" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24853932..24854724 /note="source:INTACT345_F202_scaffold_1-int 10005 10852" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24854727..24855234 /note="source:INTACT345_F202_scaffold_1-int 11440 11960" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24855500..24856631) /note="source:INTACT58_F125_scaffold_5-int 15769 17090" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24856231..24857200 /note="source:INTACT556_F252_scaffold_2-int 1 677" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24857340..24871769 /note="source:INTACT556_F252_scaffold_2-int 779 18142" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24873674..24874444) /note="source:INTACT61_F128_scaffold_2-int 1 775" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24876092..24876305 /note="source:scaffold_5_CACTA_0614 3198 3411" /mobile_element_type="transposon:TIR/CACTA" mobile_element 24876626..24876709 /note="source:scaffold_5_CACTA_0614 3385 3468" /mobile_element_type="transposon:TIR/CACTA" gene 24896928..24898687 /locus_tag="TCM_024355" /note="dbxref CacaoGD:Thecc1EG024355" mRNA join(24896928..24897304,24897410..24897513, 24897624..24897701,24898123..24898193,24898324..24898687) /locus_tag="TCM_024355" /product="Type-a response regulator" /inference="alignment:exonerate- protein:2:frave:gene21885.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045246t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s03750.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05821t00001" CDS join(24897202..24897304,24897410..24897513, 24897624..24897701,24898123..24898193,24898324..24898609) /locus_tag="TCM_024355" /note="paralog of Thecc1EG045246t1" /codon_start=1 /product="Type-a response regulator" /protein_id="EOY09015.1" /db_xref="Phytozome:POPTR_0016s03750.1" /db_xref="TAIR:AT3G57040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IHS4" /translation="MGMAAESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKA LEFLGLHEDDTTNPSTPCVSPNNHQEVEVNLVITDYCMPGMTGYDLLKKIKESSSLRD IPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLRPHLMKTKSKDQHQKQEKQ EEKSAFQSPKQQQQEKEEHQQQQQSSNNKRKAIEEGLSPERTRPRYNGITTVV" gene 24901968..24903540 /locus_tag="TCM_024356" /note="dbxref CacaoGD:Thecc1EG024356" mRNA join(24901968..24902368,24902503..24903540) /locus_tag="TCM_024356" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.33 coverage" CDS join(24902105..24902368,24902503..24902610) /locus_tag="TCM_024356" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09016.1" /translation="MDYSQFEIGFGKSLMMFWPKFNLFRISYCRLKLMRITFIFLKVL MAFGLENEAVRVSLLHGSPLLTLDIAIQEIIFEETRLDLDKSPQVGHLDILKVIPRTF EGLIAGHVAWPIEPLGHVCHS" mobile_element 24904942..24905648 /note="source:CACAO_M_E4514_F134_scaffold_2 1 706" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24905648..24906670 /note="source:CACAO_M_E297_F134_scaffold_1 794 1789" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24906771..24907936 /note="source:CACAO_M_S_E121774_F134_scaffold_10 1038 2969" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24911043..24913764 /note="source:CACAO_M_E43752_F73_scaffold_5 1 2722" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 24916783..24923201 /locus_tag="TCM_024358" /note="dbxref CacaoGD:Thecc1EG024358" mRNA join(24916783..24916946,24917570..24917728, 24919329..24919434,24919909..24920091,24920789..24921268, 24921569..24921831,24922563..24923201) /locus_tag="TCM_024358" /product="Plant protein 1589 of Uncharacterized protein function isoform 3" /inference="alignment:exonerate- protein:2:ricco:28094.m000170" /inference="similar to AA sequence:ricco:28094.m000170" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:PASA:2:TSA:puevd3b023562t1a2; inference alignment:Newbler:10:TSA:cgbaB_g06426t00001" mRNA join(24916783..24916946,24917570..24917728, 24919329..24919434,24919909..24920091,24920789..24921268, 24921569..24921652,24921781..24921831,24922563..24923201) /locus_tag="TCM_024358" /product="Plant protein 1589 of Uncharacterized protein function isoform 2" /inference="alignment:exonerate- protein:2:ricco:28094.m000170" /inference="similar to AA sequence:ricco:28094.m000170" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:PASA:2:TSA:puevd3b023562t1a4; inference alignment:Newbler:10:TSA:cgbaB_g06426t00001" mRNA join(24916783..24916946,24919329..24919434, 24919909..24920091,24920789..24921268,24921569..24921652, 24921751..24921831,24922563..24923201) /locus_tag="TCM_024358" /product="Plant protein 1589 of Uncharacterized protein function isoform 4" /inference="alignment:exonerate- protein:2:ricco:28094.m000170" /inference="similar to AA sequence:ricco:28094.m000170" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:PASA:2:TSA:puevd3b023562t1a3; inference alignment:Newbler:10:TSA:cgbaB_g06426t00001" mRNA join(24916810..24916946,24917570..24917728, 24919329..24919434,24919909..24920091,24920789..24921268, 24921569..24921652,24921751..24921831,24922563..24922700, 24923019..24923054) /locus_tag="TCM_024358" /product="Plant protein 1589 of Uncharacterized protein function isoform 1" /inference="alignment:exonerate- protein:2:ricco:28094.m000170" /inference="similar to AA sequence:ricco:28094.m000170" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06426t00001" CDS join(24917681..24917728,24919329..24919434, 24919909..24920091,24920789..24921268,24921569..24921652, 24921751..24921815) /locus_tag="TCM_024358" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28094.m000170" /codon_start=1 /product="Plant protein 1589 of Uncharacterized protein function isoform 1" /protein_id="EOY09017.1" /db_xref="TAIR:AT3G10250.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SS36" /translation="MSTGSVRRVSRQDIQLVQNLIERCLQLYMTQKEVVETLLAQAKI EPGFTELVWQKLEEENREFFQAYYLRLTVKQQIMEFNKLLEQQVRLMRQIHPTGVVSV SNSNGLRLPPMPQNSACYAPEDTGPSLKQENMHHPMGSSLPNVFTNGSSSLHAGMHAA VELPTHASRIDAPPPLLSTQSSNMGLMQGINGKMIKSETGYSGSSAYMFGAEGNVLEP RPTIGDTSFSSVESSSQPLNEPLMDADISSIGFLGQIPRNFSLSDLAADFSQSSDILE SYPRSPYLATDNENFLDSREREHQADNKMLDTISEGLSYEDFRNE" CDS join(24917681..24917728,24919329..24919434, 24919909..24920091,24920789..24921268,24921569..24921652, 24921781..24921815) /locus_tag="TCM_024358" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28094.m000170" /codon_start=1 /product="Plant protein 1589 of Uncharacterized protein function isoform 2" /protein_id="EOY09018.1" /db_xref="TAIR:AT3G10250.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SS36" /translation="MSTGSVRRVSRQDIQLVQNLIERCLQLYMTQKEVVETLLAQAKI EPGFTELVWQKLEEENREFFQAYYLRLTVKQQIMEFNKLLEQQVRLMRQIHPTGVVSV SNSNGLRLPPMPQNSACYAPEDTGPSLKQENMHHPMGSSLPNVFTNGSSSLHAGMHAA VELPTHASRIDAPPPLLSTQSSNMGLMQGINGKMIKSETGYSGSSAYMFGAEGNVLEP RPTIGDTSFSSVESSSQPLNEPLMDADISSIGFLGQIPRNFSLSDLAADFSQSSDILE SYPRSPYLATDNENFLDSREREHQEGLSYEDFRNE" CDS join(24917681..24917728,24919329..24919434, 24919909..24920091,24920789..24921268,24921569..24921750) /locus_tag="TCM_024358" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:28094.m000170" /codon_start=1 /product="Plant protein 1589 of Uncharacterized protein function isoform 3" /protein_id="EOY09019.1" /db_xref="TAIR:AT3G10250.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SS36" /translation="MSTGSVRRVSRQDIQLVQNLIERCLQLYMTQKEVVETLLAQAKI EPGFTELVWQKLEEENREFFQAYYLRLTVKQQIMEFNKLLEQQVRLMRQIHPTGVVSV SNSNGLRLPPMPQNSACYAPEDTGPSLKQENMHHPMGSSLPNVFTNGSSSLHAGMHAA VELPTHASRIDAPPPLLSTQSSNMGLMQGINGKMIKSETGYSGSSAYMFGAEGNVLEP RPTIGDTSFSSVESSSQPLNEPLMDADISSIGFLGQIPRNFSLSDLAADFSQSSDILE SYPRSPYLATDNENFLDSREREHQGDTVIFPSSSFKYLFVEFLLVVIFEECDNFVL" CDS join(24919365..24919434,24919909..24920091, 24920789..24921268,24921569..24921652,24921751..24921815) /locus_tag="TCM_024358" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:28094.m000170" /codon_start=1 /product="Plant protein 1589 of Uncharacterized protein function isoform 4" /protein_id="EOY09020.1" /db_xref="TAIR:AT3G10250.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SS36" /translation="MTQKEVVETLLAQAKIEPGFTELVWQKLEEENREFFQAYYLRLT VKQQIMEFNKLLEQQVRLMRQIHPTGVVSVSNSNGLRLPPMPQNSACYAPEDTGPSLK QENMHHPMGSSLPNVFTNGSSSLHAGMHAAVELPTHASRIDAPPPLLSTQSSNMGLMQ GINGKMIKSETGYSGSSAYMFGAEGNVLEPRPTIGDTSFSSVESSSQPLNEPLMDADI SSIGFLGQIPRNFSLSDLAADFSQSSDILESYPRSPYLATDNENFLDSREREHQADNK MLDTISEGLSYEDFRNE" gene complement(24923816..24932099) /locus_tag="TCM_024360" /note="dbxref CacaoGD:Thecc1EG024360" mRNA complement(join(24923816..24924397,24925012..24925114, 24925199..24925306,24926836..24926953,24928345..24928426, 24928531..24928627,24928966..24929077,24929155..24929242, 24929566..24929657,24929787..24929857,24930963..24931081, 24931216..24931338,24931866..24932099)) /locus_tag="TCM_024360" /product="Cystathionine beta-lyase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s03770.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s03770.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:PASA:2:TSA:puevd3b023563t1a2; inference alignment:Newbler:10:TSA:cgbaB_g06231t00001" mRNA complement(join(24923816..24924397,24925012..24925114, 24925199..24925306,24925439..24925492,24926836..24926953, 24928345..24928426,24928531..24928627,24928966..24929077, 24929155..24929242,24929566..24929657,24929787..24929857, 24930963..24931081,24931170..24931338,24931866..24932023)) /locus_tag="TCM_024360" /product="Cystathionine beta-lyase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s03770.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s03770.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06231t00001" mRNA complement(join(24923855..24924397,24925012..24925114, 24925199..24925306,24926836..24926953,24928345..24928426, 24928531..24928627,24928966..24929077,24929155..24929242, 24929566..24929657,24929787..24929857,24930963..24931081, 24931170..24931338,24931866..24932099)) /locus_tag="TCM_024360" /product="Cystathionine beta-lyase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s03770.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s03770.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5526t1; inference alignment:Newbler:10:TSA:cgbaB_g06231t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc256t43" mRNA complement(join(24923993..24924397,24925012..24925114, 24925199..24925306,24926836..24926953,24928345..24928426, 24928531..24928627,24928966..24929077,24929155..24929242, 24929566..24929657,24929787..24929857,24930963..24931081, 24931170..24931195)) /locus_tag="TCM_024360" /product="Cystathionine beta-lyase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s03770.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s03770.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02837t00001; alternateUTRof:Thecc1EG024360t3; inference alignment:Newbler:10:TSA:cgbaB_g06231t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc256t43" CDS complement(join(24924222..24924397,24925012..24925114, 24925199..24925306,24926836..24926953,24928345..24928426, 24928531..24928627,24928966..24929077,24929155..24929242, 24929566..24929657,24929787..24929857,24930963..24931081, 24931170..24931338,24931866..24931931)) /locus_tag="TCM_024360" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Cystathionine beta-lyase isoform 2" /protein_id="EOY09022.1" /db_xref="Phytozome:POPTR_0016s03770.1" /db_xref="TAIR:AT3G57050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P53780" /translation="MASSLPLRPFLSSIYSVPNHKNGPLLENFPRSSEVNKELYLERR QLLSGKRFRLNCLGHRDMDVSASVLVESVTECSAELNVEHQEPSISTLLMNIESNFDP YGAMSTPLYQTATFKQPSAIDNGPYDYTRSGNPTRDVLERLLAKLEKADRAFCFTSGM AALSAVAQLVGTGEEIVAGDDIYGGSDRLLSQVTPKYGVVVKRVNTSDLDEVRAVIGP KTKLVWLESPTNPRQQIADIRRIAEMAHAYGALMLVDNSIMSPVLSQPLKLGADIVMH SATKFIAGHSDVMAGVLAVKGESLAEQLYFLQNAVGSGLAPFDCWICLRGIKTMALRI EKQQENAQKIAEFLSSHPLVKKVNYAGLPDHPGRDLHYSQAKGAGSVLSFLTGSLALS KHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPSAVREARGLTEDLVRISVGIEDV NDLIADLDNALRTGPL" CDS complement(join(24924222..24924397,24925012..24925114, 24925199..24925306,24925439..24925492,24926836..24926953, 24928345..24928426,24928531..24928627,24928966..24929077, 24929155..24929242,24929566..24929657,24929787..24929857, 24930963..24931081,24931170..24931338,24931866..24931931)) /locus_tag="TCM_024360" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Cystathionine beta-lyase isoform 1" /protein_id="EOY09021.1" /db_xref="Phytozome:POPTR_0016s03770.1" /db_xref="TAIR:AT3G57050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P53780" /translation="MASSLPLRPFLSSIYSVPNHKNGPLLENFPRSSEVNKELYLERR QLLSGKRFRLNCLGHRDMDVSASVLVESVTECSAELNVEHQEPSISTLLMNIESNFDP YGAMSTPLYQTATFKQPSAIDNGPYDYTRSGNPTRDVLERLLAKLEKADRAFCFTSGM AALSAVAQLVGTGEEIVAGDDIYGGSDRLLSQVTPKYGVVVKRVNTSDLDEVRAVIGP KTKLVWLESPTNPRQQIADIRRIAEMAHAYGALMLVDNSIMSPVLSQPLKLGADIVMH SATKFIAGHSDVMAGVLAVKGESLAEQLYFLQNAVGSGLAPFDCWICLRGIKTMALRI EKQQENAQKIAEFLSSHSLVKKENAQKIAEFLSSHPLVKKVNYAGLPDHPGRDLHYSQ AKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPSAVRE ARGLTEDLVRISVGIEDVNDLIADLDNALRTGPL" CDS complement(join(24924222..24924397,24925012..24925114, 24925199..24925306,24926836..24926953,24928345..24928426, 24928531..24928627,24928966..24929077,24929155..24929242, 24929566..24929657,24929787..24929857,24930963..24931037)) /locus_tag="TCM_024360" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Cystathionine beta-lyase isoform 3" /protein_id="EOY09023.1" /db_xref="Phytozome:POPTR_0016s03770.1" /db_xref="TAIR:AT3G57050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E5GBZ1" /translation="MNIESNFDPYGAMSTPLYQTATFKQPSAIDNGPYDYTRSGNPTR DVLERLLAKLEKADRAFCFTSGMAALSAVAQLVGTGEEIVAGDDIYGGSDRLLSQVTP KYGVVVKRVNTSDLDEVRAVIGPKTKLVWLESPTNPRQQIADIRRIAEMAHAYGALML VDNSIMSPVLSQPLKLGADIVMHSATKFIAGHSDVMAGVLAVKGESLAEQLYFLQNAV GSGLAPFDCWICLRGIKTMALRIEKQQENAQKIAEFLSSHPLVKKVNYAGLPDHPGRD LHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIP SAVREARGLTEDLVRISVGIEDVNDLIADLDNALRTGPL" CDS complement(join(24924222..24924397,24925012..24925114, 24925199..24925306,24926836..24926953,24928345..24928426, 24928531..24928627,24928966..24929077,24929155..24929242, 24929566..24929657,24929787..24929857,24930963..24931037)) /locus_tag="TCM_024360" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Cystathionine beta-lyase isoform 3" /protein_id="EOY09024.1" /db_xref="Phytozome:POPTR_0016s03770.1" /db_xref="TAIR:AT3G57050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E5GBZ1" /translation="MNIESNFDPYGAMSTPLYQTATFKQPSAIDNGPYDYTRSGNPTR DVLERLLAKLEKADRAFCFTSGMAALSAVAQLVGTGEEIVAGDDIYGGSDRLLSQVTP KYGVVVKRVNTSDLDEVRAVIGPKTKLVWLESPTNPRQQIADIRRIAEMAHAYGALML VDNSIMSPVLSQPLKLGADIVMHSATKFIAGHSDVMAGVLAVKGESLAEQLYFLQNAV GSGLAPFDCWICLRGIKTMALRIEKQQENAQKIAEFLSSHPLVKKVNYAGLPDHPGRD LHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIP SAVREARGLTEDLVRISVGIEDVNDLIADLDNALRTGPL" gene 24932104..24936514 /locus_tag="TCM_024361" /note="dbxref CacaoGD:Thecc1EG024361" mRNA join(24932104..24932291,24932405..24932556, 24932670..24932788,24932872..24932933,24933110..24933151, 24934160..24934293,24934931..24935000,24936062..24936514) /locus_tag="TCM_024361" /product="Tubulin folding cofactor B" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033606001" /inference="similar to AA sequence:Phytozome:POPTR_0006s03980.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaL_g08474t00001" CDS join(24932190..24932291,24932405..24932556, 24932670..24932788,24932872..24932933,24933110..24933151, 24934160..24934293,24934931..24935000,24936062..24936109) /locus_tag="TCM_024361" /codon_start=1 /product="Tubulin folding cofactor B" /protein_id="EOY09025.1" /db_xref="Phytozome:POPTR_0006s03980.1" /db_xref="TAIR:AT3G10220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L5R5" /translation="MASRLQIEGDDSVLLRVTHSNLKNFATDVRFSLQMSVEAVKDKL WKKCGTAVSSMRLELYDDCKNKLCDLSDDSRPLGFYSPLDGFRIHVIDLDPSSVTSGG WLEDTSLVEKYSISEEEYNKRSGTFRKFKEKMASQNSSAFKNKMSDDYMEDLCANIKV GERCEVEPGEKRGVVKYVGQAEALGPGFWIGVQYDEPLGKHDGMVKGTRYFQCPPLCG AMVRPDKVKVGDYPEQDPFEEDEI" gene complement(24936527..24945257) /locus_tag="TCM_024362" /note="dbxref CacaoGD:Thecc1EG024362" mRNA complement(join(24936527..24937405,24937563..24937619, 24937703..24937802,24937907..24937974,24938060..24938155, 24938696..24938784,24938881..24939025,24940564..24940653, 24940809..24940877,24941097..24941177,24941992..24942123, 24942219..24942296,24942838..24942993,24943506..24943603, 24943695..24943791,24944931..24945257)) /locus_tag="TCM_024362" /product="Pyruvate kinase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033599001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022396t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033599001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5526t4" mRNA complement(join(24936884..24937405,24937563..24937622, 24937703..24937802,24937907..24937974,24938060..24938155, 24938696..24938784,24938881..24939025,24940564..24940653, 24940809..24940877,24941097..24941177,24941992..24942123, 24942219..24942296,24942838..24942993,24943506..24943603, 24943695..24943791,24944931..24945149)) /locus_tag="TCM_024362" /product="Pyruvate kinase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033599001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022396t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033599001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5526t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5526t4; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc193t42" CDS complement(join(24937265..24937405,24937563..24937619, 24937703..24937802,24937907..24937974,24938060..24938155, 24938696..24938784,24938881..24939025,24940564..24940653, 24940809..24940877,24941097..24941177,24941992..24942123, 24942219..24942296,24942838..24942993,24943506..24943603, 24943695..24943791,24944931..24944999)) /locus_tag="TCM_024362" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG022396t1" /codon_start=1 /product="Pyruvate kinase family protein isoform 1" /protein_id="EOY09026.1" /db_xref="Phytozome:GSVIVT01033599001" /db_xref="TAIR:AT3G52990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94KE3" /translation="MQGGQMVVEGPVRLSSVLTSSKLSFLPSLTKIVGTLGPKSRSVE VIEACIKAGMSVARFDFSGLDSDYHQETIDNLRIAVKSARKLCAVMLDTVGPELQVYN KTAKPIELKADEIVTITPDATEEPSSEVLPISYAGLAGTVKKGDTIFLGQYLFTGSET TSVWLEVLETKDQDVICLVKNTATLAGLIFTMHVSQVRINLPTLNEKDKQVISNWGKR NNVDFISLSYTRHAEDVGELRAFLRTQNLHETQIFAKIETVEGLKHFDEILQEADGII LSRGNLGIDLPPEKVFLFQKSAVHKCNMVGKPAIITRVVDSMTENLRPTRAEATDVAN AVLDGTDGILLGAETLRGLYPIEAVTTVGRICAEAEKVYNHFRHFKRIDKHVGEPMSH AESVASSAVRSAIKVKAAIIVVFTSSGGAARLIAKYKPPVPVLAIVVPRLKTISFKWT FTGSSQARQLLGVRGVYPLLTSPDMATSGELGLKLALDHGKSVGLLKPDDQAVVFQKI GDSSVVKIVQLEG" CDS complement(join(24937265..24937405,24937563..24937622, 24937703..24937802,24937907..24937974,24938060..24938155, 24938696..24938784,24938881..24939025,24940564..24940653, 24940809..24940877,24941097..24941177,24941992..24942123, 24942219..24942296,24942838..24942993,24943506..24943603, 24943695..24943791,24944931..24944999)) /locus_tag="TCM_024362" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG022396t1" /codon_start=1 /product="Pyruvate kinase family protein isoform 2" /protein_id="EOY09027.1" /db_xref="Phytozome:GSVIVT01033599001" /db_xref="TAIR:AT3G52990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94KE3" /translation="MQGGQMVVEGPVRLSSVLTSSKLSFLPSLTKIVGTLGPKSRSVE VIEACIKAGMSVARFDFSGLDSDYHQETIDNLRIAVKSARKLCAVMLDTVGPELQVYN KTAKPIELKADEIVTITPDATEEPSSEVLPISYAGLAGTVKKGDTIFLGQYLFTGSET TSVWLEVLETKDQDVICLVKNTATLAGLIFTMHVSQVRINLPTLNEKDKQVISNWGKR NNVDFISLSYTRHAEDVGELRAFLRTQNLHETQIFAKIETVEGLKHFDEILQEADGII LSRGNLGIDLPPEKVFLFQKSAVHKCNMVGKPAIITRVVDSMTENLRPTRAEATDVAN AVLDGTDGILLGAETLRGLYPIEAVTTVGRICAEAEKVYNHFRHFKRIDKHVGEPMSH AESVASSAVRSAIKVKAAIIVVFTSSGGAARLIAKYKPPVPVLAIVVPRLKTISFKWT FTGSSQQARQLLGVRGVYPLLTSPDMATSGELGLKLALDHGKSVGLLKPDDQAVVFQK IGDSSVVKIVQLEG" mobile_element 24947206..24947328 /note="source:INTACT44_F119_scaffold_6-int 20 149" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(24947994..24960754) /locus_tag="TCM_024364" /note="dbxref CacaoGD:Thecc1EG024364" mRNA complement(join(24947994..24948397,24950658..24950960, 24957944..24958339,24960625..24960754)) /locus_tag="TCM_024364" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is paralog weak, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.22 coverage" CDS complement(join(24948193..24948397,24950658..24950842)) /locus_tag="TCM_024364" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09028.1" /translation="MLEGVLSEEASKGILNVEAPQVVPSAKTPKGVPSADAPKNKHGT TIYTGKSKELKTSDKAYDVGVHMTVMVVYGMRAHGDNNYVRCGSAHDDDNYVQCGSAH NDNNYVQSGSAHDNNSYVRCGSAHELS" gene 24950734..24958360 /locus_tag="TCM_024365" /note="dbxref CacaoGD:Thecc1EG024365" mRNA join(24950734..24950865,24954613..24954838, 24956554..24956653,24957319..24957433,24957515..24958360) /locus_tag="TCM_024365" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017422t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.19 coverage" mobile_element 24952127..24954847 /note="source:CACAO_M_E43753_F73_scaffold_5 1 2721" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(24954724..24954838,24956554..24956653, 24957319..24957433,24957515..24957691) /locus_tag="TCM_024365" /note="paralog of Thecc1EG017422t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09029.1" /translation="MEKMEKLVQKPCEVSKGIRGKNVCRGFAAVVTGSMGVSNIDISS SVIPYAIKIAKGMSFLLAPLYLGFVYKRMDSFVVPNPKVQLHVSSISSNDVWLRFIHS KRNKTSSQGKSTPSGEVEGLNISEFESGEESCDHTNDYESSDKSIEERLPKHEYLSLG GEVDGNAI" mobile_element 24954850..24954976 /note="source:INTACT44_F119_scaffold_6-int 1242 1383" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24962074..24962432) /note="source:CACAO_M_E49559_F88_scaffold_7 7865 8235" /mobile_element_type="retrotransposon:LTR/Copia" gene 24962551..24966377 /locus_tag="TCM_024366" /note="dbxref CacaoGD:Thecc1EG024366" mRNA join(24962551..24962631,24965271..24966377) /locus_tag="TCM_024366" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.89 coverage" mobile_element complement(24962842..24962989) /note="source:CACAO_M_E49559_F88_scaffold_7 7629 7780" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(24962890..24963008) /note="source:scaffold_5_CACTA_0584 1924 2045" /mobile_element_type="transposon:TIR/CACTA" gene complement(24963900..24967804) /locus_tag="TCM_024367" /note="dbxref CacaoGD:Thecc1EG024367" mRNA complement(join(24963900..24963924,24965800..24966386, 24966470..24966599,24967728..24967804)) /locus_tag="TCM_024367" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.69 coverage" CDS 24965416..24965619 /locus_tag="TCM_024366" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09030.1" /translation="MDWLDESNFKEFVKLFIYLVFYFMVKYLCMLLRWLGSERDVQLM SDKFLIQSKYLLIRSSEHILEFL" CDS complement(join(24966295..24966386,24966470..24966599, 24967728..24967802)) /locus_tag="TCM_024367" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09031.1" /translation="MSMQIKLKKYLLSSCSNLGYVWLISHGECNLVGQPMRKMASGYE NAIIFLEVDMCTSHPYHNKPLYAESCEYKPKEFMSFYDCYFFRQQELKLWDKLW" mobile_element 24966641..24968188 /note="source:CACAO_M_S_E66039_F17_scaffold_5 1 1526" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(24968413..24969325) /locus_tag="TCM_024368" /note="dbxref CacaoGD:Thecc1EG024368" mRNA complement(24968413..24969325) /locus_tag="TCM_024368" /product="H0502G05.11 protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012420t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(24968519..24968929) /locus_tag="TCM_024368" /note="paralog of Thecc1EG012420t1" /codon_start=1 /product="H0502G05.11 protein, putative" /protein_id="EOY09032.1" /translation="MQVLEENNKWMMEIITQFASSIATASQPPPMLIKNVANVVNNNE NKGNGESTPDPLLNTTNPSVIGNLVMIAYSTSIQSLVTKKELEKMLDQKNKSLNFLEF DLKLLYLVEVATKPYLKDYANSKFKPFNGKTSNA" mobile_element 24970251..24970317 /note="source:INTACT19F_F94_scaffold_1-int 462 527" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24971101..24971157) /note="source:CACAO_M_S_E101805_F5_scaffold_9 166 221" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24971860..24974783 /note="source:CACAO_M_E43755_F86_scaffold_5 1 2924" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 24976240..24976713 /note="source:CACAO_on_S_E390_scaffold_9 2391 2850" /mobile_element_type="transposon:TIR/Mutator" gene 24977980..24982054 /locus_tag="TCM_024370" /note="dbxref CacaoGD:Thecc1EG024370" mRNA join(24977980..24978025,24978175..24978225, 24978596..24978704,24978792..24978841,24978921..24978975, 24979129..24979220,24979658..24979803,24980247..24980389, 24980497..24980582,24981823..24982054) /locus_tag="TCM_024370" /product="Eukaryotic translation initiation factor 2 subunit beta" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024550001" /inference="similar to AA sequence:Phytozome:GSVIVT01024550001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13985t2" CDS join(24978190..24978225,24978596..24978704, 24978792..24978841,24978921..24978975,24979129..24979220, 24979658..24979803,24980247..24980389,24980497..24980582, 24981823..24981900) /locus_tag="TCM_024370" /codon_start=1 /product="Eukaryotic translation initiation factor 2 subunit beta" /protein_id="EOY09033.1" /db_xref="Phytozome:GSVIVT01024550001" /db_xref="TAIR:AT5G20920.3" /db_xref="UniProtKB/TrEMBL:UniRef50_P55871" /translation="MADDEVKDEVAEITPFDPTKKKKKKKVVIQDPADDSVDKLAEKT EALSVSDGLDFTSMKKKKKKQVEASTLNEESGDAGDDFDDHIDGDEEGDGIVLQQRYP WEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDL CKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYINEYVICLG CKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRNTGT" gene complement(24983676..24993175) /locus_tag="TCM_024372" /note="dbxref CacaoGD:Thecc1EG024372" mRNA complement(join(24983676..24984751,24984906..24984931, 24986212..24986415,24986499..24986650,24987425..24987482, 24987563..24987678,24987766..24987865,24987968..24988190, 24988288..24988355,24988769..24988945,24989084..24989725, 24990261..24990452,24990609..24991794,24991888..24992048, 24992139..24992464,24992930..24993175)) /locus_tag="TCM_024372" /product="Binding isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s03990.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s03990.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc293t8; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc293t8" mRNA complement(join(24984074..24985002,24985079..24985252, 24986214..24986415,24987425..24987482,24987563..24987678, 24987766..24987865,24987968..24988190,24988288..24988355, 24988769..24988945,24989084..24989725,24990261..24990452, 24990609..24991794,24991888..24992048,24992139..24992464, 24992930..24993175)) /locus_tag="TCM_024372" /product="Binding isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s03990.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s03990.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc223t2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc293t8; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc293t9" mRNA complement(join(24984074..24985002,24985079..24985243, 24986214..24986415,24986499..24986650,24987425..24987482, 24987563..24987678,24987766..24987865,24987968..24988190, 24988288..24988355,24988769..24988945,24989084..24989725, 24990261..24990452,24990609..24991794,24991888..24992048, 24992139..24992464,24992930..24993175)) /locus_tag="TCM_024372" /product="Binding isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s03990.1" /inference="similar to AA sequence:ricco:28448.m000358" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc223t6; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc293t9; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc293t8" mRNA complement(join(24984074..24985002,24985079..24985252, 24986214..24986415,24986499..24986650,24987425..24987482, 24987563..24987678,24987766..24987865,24987968..24988190, 24988288..24988355,24988769..24988945,24989084..24989725, 24990261..24990452,24990609..24991794,24991888..24992048, 24992139..24992464,24992930..24993175)) /locus_tag="TCM_024372" /product="Binding isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s03990.1" /inference="similar to AA sequence:ricco:28448.m000358" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc223t11; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc293t9; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc293t8" CDS complement(join(24984733..24984751,24984906..24984931, 24986212..24986415,24986499..24986650,24987425..24987482, 24987563..24987678,24987766..24987865,24987968..24988190, 24988288..24988355,24988769..24988945,24989084..24989725, 24990261..24990452,24990609..24991794,24991888..24992048, 24992139..24992464,24992930..24993074)) /locus_tag="TCM_024372" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Binding isoform 1" /protein_id="EOY09034.1" /db_xref="Phytozome:POPTR_0006s03990.1" /db_xref="TAIR:AT3G57060.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M1J4" /translation="MAPHFVFPPNLRALEEQEEDEHQHNRLSVQNPIDLDPLRPAELE EFVKGVSFDLSDKELFCIEEQDVFDRVYTLVRSFSSLTPSCKFILVESLRSNLSVLLP NVDSLVRVSQGQDDNETPMLDRVTSHRNAFKIYTFFLLHIILAEEFNNGSSNNPKVTA SSRKKQPVNLWNWELQRGRMLNLIANSLEINLALLFGSADPDENYLSFIVKNSFSMFE NTMLLKDSETKDALCRIIGACATKYHYTEQSSASIMHLIHKYDFVVIHMADAVALAEK KYGDGTLAISLIREIGRTNPKAYVKDTAGAENVGRFLVELADRLPKLMSTNIGLLVPH FGGESYKIRNALVGVLGKLVAKAFKDVEGEVSSKSVRLRTKQAMLEILLERCRDVSAY TRSRVLQVWAELCEEHSVSIGLWNEVATVAAGRLEDKSAIVRKSTLNLLIMMLQHNPF GPQLRIASFEATLEQYKKKLNELEPDKLSEGMKDGVHSDNDSCNDEGEVDNANAEEVA NHQSESLTDSLPHMEQEIAHKDSSVPDVGNLEQTRALVASLEAGLKFSKCISATMPTL VQLMASSSATDVENTILLLMRCRQFQIDGAEACLRKMLPLVFSQDKSIYEAVENAFVT IYIRKNLVETAKNLLNLAIDSNVGDLAALEFIVGALVSKGDISSGVISALWDLFCFNV NGTTAEQSRGALAILCMAAKSSTEILGSHLQDIIDIGFGRWAKVEPLLARTACIAIQR LSEEDKKKLLLSNGSRIFGILESLITGFGLPDNIWYAAADKAIGAVYMIHPTPENLAA DLVKKSLSSVIDGSTVDALHNDINSGTCSVLTTVQVAKLSRYLFVTSHVAMNQLVYVE SCVRKIQKQKSNKEKVDAEGTANAETQKDSSINAELGLAASEDAVLDTLAERAEKEIV SSGSSEKNLIGECAPFLSKLCRNFSLMQKYPVLQASAMLALCRFMIIDANYCDANLQL LFTVVENAPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLRDPSVSVRKNAVLVL SHLILNDMMKVKGYINEMAVRVEDHDGRISNLAKLFFHELSKKGSNPIYNLLPDILGK LFTQDLQKESFCNIMQFLIGSIKKDKQMESLVEKLCNRFSGVTDARQWEHISYCLSQL SFTEKGMKKLIELFKTYEHALSKDSVMDHFRNIINKGKKFAKPELKVCIEEFEEKLNK FHMEKKEQEVTARNAEIHRQKVGNIEGFPMARNDGEESAESEIAEGSTGSRSNKSARY GQ" CDS complement(join(24984902..24985002,24985079..24985243, 24986214..24986415,24986499..24986650,24987425..24987482, 24987563..24987678,24987766..24987865,24987968..24988190, 24988288..24988355,24988769..24988945,24989084..24989725, 24990261..24990452,24990609..24991794,24991888..24992048, 24992139..24992464,24992930..24993074)) /locus_tag="TCM_024372" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:28448.m000358" /codon_start=1 /product="Binding isoform 3" /protein_id="EOY09036.1" /db_xref="TAIR:AT3G57060.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M1J4" /translation="MAPHFVFPPNLRALEEQEEDEHQHNRLSVQNPIDLDPLRPAELE EFVKGVSFDLSDKELFCIEEQDVFDRVYTLVRSFSSLTPSCKFILVESLRSNLSVLLP NVDSLVRVSQGQDDNETPMLDRVTSHRNAFKIYTFFLLHIILAEEFNNGSSNNPKVTA SSRKKQPVNLWNWELQRGRMLNLIANSLEINLALLFGSADPDENYLSFIVKNSFSMFE NTMLLKDSETKDALCRIIGACATKYHYTEQSSASIMHLIHKYDFVVIHMADAVALAEK KYGDGTLAISLIREIGRTNPKAYVKDTAGAENVGRFLVELADRLPKLMSTNIGLLVPH FGGESYKIRNALVGVLGKLVAKAFKDVEGEVSSKSVRLRTKQAMLEILLERCRDVSAY TRSRVLQVWAELCEEHSVSIGLWNEVATVAAGRLEDKSAIVRKSTLNLLIMMLQHNPF GPQLRIASFEATLEQYKKKLNELEPDKLSEGMKDGVHSDNDSCNDEGEVDNANAEEVA NHQSESLTDSLPHMEQEIAHKDSSVPDVGNLEQTRALVASLEAGLKFSKCISATMPTL VQLMASSSATDVENTILLLMRCRQFQIDGAEACLRKMLPLVFSQDKSIYEAVENAFVT IYIRKNLVETAKNLLNLAIDSNVGDLAALEFIVGALVSKGDISSGVISALWDLFCFNV NGTTAEQSRGALAILCMAAKSSTEILGSHLQDIIDIGFGRWAKVEPLLARTACIAIQR LSEEDKKKLLLSNGSRIFGILESLITGFGLPDNIWYAAADKAIGAVYMIHPTPENLAA DLVKKSLSSVIDGSTVDALHNDINSGTCSVLTTVQVAKLSRYLFVTSHVAMNQLVYVE SCVRKIQKQKSNKEKVDAEGTANAETQKDSSINAELGLAASEDAVLDTLAERAEKEIV SSGSSEKNLIGECAPFLSKLCRNFSLMQKYPVLQASAMLALCRFMIIDANYCDANLQL LFTVVENAPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLRDPSVSVRKNAVLVL SHLILNDMMKVKGYINEMAVRVEDHDGRISNLAKLFFHELSKKGSNPIYNLLPDILGK LFTQDLQKESFCNIMQFLIGSIKKDKQMESLVEKLCNRFSGVTDARQWEHISYCLSQL SFTEKGMKKLIELFKTYEHALSKDSVMDHFRNIINKGKKFAKPELKVCIEEFEEKLNK FHMEKKEQEVTARNAEIHRQKVGNIEGFPMARNDGEESAESEIAEDGEVINASIEGET ESLHDESASKIVESEESSGASSEVTEQEEGETEIQSLRVNRKGISQSQDKEGHVKDLK GVSATTRRSTGSRSNKR" CDS complement(join(24984902..24985002,24985079..24985252, 24986214..24986415,24986499..24986650,24987425..24987482, 24987563..24987678,24987766..24987865,24987968..24988190, 24988288..24988355,24988769..24988945,24989084..24989725, 24990261..24990452,24990609..24991794,24991888..24992048, 24992139..24992464,24992930..24993074)) /locus_tag="TCM_024372" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28448.m000358" /codon_start=1 /product="Binding isoform 2" /protein_id="EOY09035.1" /db_xref="TAIR:AT3G57060.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M1J4" /translation="MAPHFVFPPNLRALEEQEEDEHQHNRLSVQNPIDLDPLRPAELE EFVKGVSFDLSDKELFCIEEQDVFDRVYTLVRSFSSLTPSCKFILVESLRSNLSVLLP NVDSLVRVSQGQDDNETPMLDRVTSHRNAFKIYTFFLLHIILAEEFNNGSSNNPKVTA SSRKKQPVNLWNWELQRGRMLNLIANSLEINLALLFGSADPDENYLSFIVKNSFSMFE NTMLLKDSETKDALCRIIGACATKYHYTEQSSASIMHLIHKYDFVVIHMADAVALAEK KYGDGTLAISLIREIGRTNPKAYVKDTAGAENVGRFLVELADRLPKLMSTNIGLLVPH FGGESYKIRNALVGVLGKLVAKAFKDVEGEVSSKSVRLRTKQAMLEILLERCRDVSAY TRSRVLQVWAELCEEHSVSIGLWNEVATVAAGRLEDKSAIVRKSTLNLLIMMLQHNPF GPQLRIASFEATLEQYKKKLNELEPDKLSEGMKDGVHSDNDSCNDEGEVDNANAEEVA NHQSESLTDSLPHMEQEIAHKDSSVPDVGNLEQTRALVASLEAGLKFSKCISATMPTL VQLMASSSATDVENTILLLMRCRQFQIDGAEACLRKMLPLVFSQDKSIYEAVENAFVT IYIRKNLVETAKNLLNLAIDSNVGDLAALEFIVGALVSKGDISSGVISALWDLFCFNV NGTTAEQSRGALAILCMAAKSSTEILGSHLQDIIDIGFGRWAKVEPLLARTACIAIQR LSEEDKKKLLLSNGSRIFGILESLITGFGLPDNIWYAAADKAIGAVYMIHPTPENLAA DLVKKSLSSVIDGSTVDALHNDINSGTCSVLTTVQVAKLSRYLFVTSHVAMNQLVYVE SCVRKIQKQKSNKEKVDAEGTANAETQKDSSINAELGLAASEDAVLDTLAERAEKEIV SSGSSEKNLIGECAPFLSKLCRNFSLMQKYPVLQASAMLALCRFMIIDANYCDANLQL LFTVVENAPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLRDPSVSVRKNAVLVL SHLILNDMMKVKGYINEMAVRVEDHDGRISNLAKLFFHELSKKGSNPIYNLLPDILGK LFTQDLQKESFCNIMQFLIGSIKKDKQMESLVEKLCNRFSGVTDARQWEHISYCLSQL SFTEKGMKKLIELFKTYEHALSKDSVMDHFRNIINKGKKFAKPELKVCIEEFEEKLNK FHMEKKEQEVTARNAEIHRQKVGNIEGFPMARNDGEESAESEIAEGVQDGEVINASIE GETESLHDESASKIVESEESSGASSEVTEQEEGETEIQSLRVNRKGISQSQDKEGHVK DLKGVSATTRRSTGSRSNKR" mRNA complement(join(24984975..24985002,24985079..24985252, 24986214..24986415,24986499..24986650,24987425..24987482, 24987563..24987678,24987766..24987865,24988288..24988355, 24988769..24988945,24989084..24989725,24990261..24990452, 24990609..24991794,24991888..24992048,24992139..24992464, 24992930..24993175)) /locus_tag="TCM_024372" /product="Binding isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s03990.1" /inference="similar to AA sequence:ricco:28448.m000358" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc293t2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc293t8; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc293t9" mRNA complement(join(<24984975..24985002,24985079..24985252, 24987425..24987482,24987563..24987678,24987766..24987865, 24987968..24988190,24988288..24988355,24988769..24988945, 24989084..24989725,24990261..24990452,24990609..24991794, 24991888..24992048,24992139..24992464,24992930..24993175)) /locus_tag="TCM_024372" /product="Binding isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s03990.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s03990.1" /note="transcript variant 6; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.61 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc293t3; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc293t9; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc293t8" CDS complement(join(<24984977..24985002,24985079..24985252, 24987425..24987482,24987563..24987678,24987766..24987865, 24987968..24988190,24988288..24988355,24988769..24988945, 24989084..24989725,24990261..24990452,24990609..24991794, 24991888..24992048,24992139..24992464,24992930..24993074)) /locus_tag="TCM_024372" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Binding isoform 6" /protein_id="EOY09039.1" /db_xref="Phytozome:POPTR_0006s03990.1" /db_xref="TAIR:AT3G57060.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M1J4" /translation="MAPHFVFPPNLRALEEQEEDEHQHNRLSVQNPIDLDPLRPAELE EFVKGVSFDLSDKELFCIEEQDVFDRVYTLVRSFSSLTPSCKFILVESLRSNLSVLLP NVDSLVRVSQGQDDNETPMLDRVTSHRNAFKIYTFFLLHIILAEEFNNGSSNNPKVTA SSRKKQPVNLWNWELQRGRMLNLIANSLEINLALLFGSADPDENYLSFIVKNSFSMFE NTMLLKDSETKDALCRIIGACATKYHYTEQSSASIMHLIHKYDFVVIHMADAVALAEK KYGDGTLAISLIREIGRTNPKAYVKDTAGAENVGRFLVELADRLPKLMSTNIGLLVPH FGGESYKIRNALVGVLGKLVAKAFKDVEGEVSSKSVRLRTKQAMLEILLERCRDVSAY TRSRVLQVWAELCEEHSVSIGLWNEVATVAAGRLEDKSAIVRKSTLNLLIMMLQHNPF GPQLRIASFEATLEQYKKKLNELEPDKLSEGMKDGVHSDNDSCNDEGEVDNANAEEVA NHQSESLTDSLPHMEQEIAHKDSSVPDVGNLEQTRALVASLEAGLKFSKCISATMPTL VQLMASSSATDVENTILLLMRCRQFQIDGAEACLRKMLPLVFSQDKSIYEAVENAFVT IYIRKNLVETAKNLLNLAIDSNVGDLAALEFIVGALVSKGDISSGVISALWDLFCFNV NGTTAEQSRGALAILCMAAKSSTEILGSHLQDIIDIGFGRWAKVEPLLARTACIAIQR LSEEDKKKLLLSNGSRIFGILESLITGFGLPDNIWYAAADKAIGAVYMIHPTPENLAA DLVKKSLSSVIDGSTVDALHNDINSGTCSVLTTVQVAKLSRYLFVTSHVAMNQLVYVE SCVRKIQKQKSNKEKVDAEGTANAETQKDSSINAELGLAASEDAVLDTLAERAEKEIV SSGSSEKNLIGECAPFLSKLCRNFSLMQKYPVLQASAMLALCRFMIIDANYCDANLQL LFTVVENAPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLRDPSVSVRKNAVLVL SHLILNDMMKVKGYINEMAVRVEDHDGRISNLAKLFFHELSKKGSNPIYNLLPDILGK LFTQDLQKESFCNIMQFLIGSIKKDKQMESLVEKLCNRFSGVTGVQDGEVINASIEGE TESLHDESASKIVESEESSGASSEVTEQEEGETEIQSLRVNRKGISQSQDKE" mRNA complement(join(24985221..24985252,24987425..24987482, 24987563..24987678,24987766..24987865,24988288..24988355, 24988769..24988945,24989084..24989725,24990261..24990452, 24990609..24991794,24991888..24992048,24992139..24992464, 24992930..24993175)) /locus_tag="TCM_024372" /product="Binding isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s03990.1" /inference="similar to AA sequence:ricco:28448.m000358" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1464t1; alternateUTRof:Thecc1EG024372t5; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc293t8; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc293t9" CDS complement(join(24986411..24986415,24987425..24987482, 24987563..24987678,24987766..24987865,24987968..24988190, 24988288..24988355,24988769..24988945,24989084..24989725, 24990261..24990452,24990609..24991794,24991888..24992048, 24992139..24992464,24992930..24993074)) /locus_tag="TCM_024372" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Binding isoform 4" /protein_id="EOY09037.1" /db_xref="Phytozome:POPTR_0006s03990.1" /db_xref="TAIR:AT3G57060.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M1J4" /translation="MAPHFVFPPNLRALEEQEEDEHQHNRLSVQNPIDLDPLRPAELE EFVKGVSFDLSDKELFCIEEQDVFDRVYTLVRSFSSLTPSCKFILVESLRSNLSVLLP NVDSLVRVSQGQDDNETPMLDRVTSHRNAFKIYTFFLLHIILAEEFNNGSSNNPKVTA SSRKKQPVNLWNWELQRGRMLNLIANSLEINLALLFGSADPDENYLSFIVKNSFSMFE NTMLLKDSETKDALCRIIGACATKYHYTEQSSASIMHLIHKYDFVVIHMADAVALAEK KYGDGTLAISLIREIGRTNPKAYVKDTAGAENVGRFLVELADRLPKLMSTNIGLLVPH FGGESYKIRNALVGVLGKLVAKAFKDVEGEVSSKSVRLRTKQAMLEILLERCRDVSAY TRSRVLQVWAELCEEHSVSIGLWNEVATVAAGRLEDKSAIVRKSTLNLLIMMLQHNPF GPQLRIASFEATLEQYKKKLNELEPDKLSEGMKDGVHSDNDSCNDEGEVDNANAEEVA NHQSESLTDSLPHMEQEIAHKDSSVPDVGNLEQTRALVASLEAGLKFSKCISATMPTL VQLMASSSATDVENTILLLMRCRQFQIDGAEACLRKMLPLVFSQDKSIYEAVENAFVT IYIRKNLVETAKNLLNLAIDSNVGDLAALEFIVGALVSKGDISSGVISALWDLFCFNV NGTTAEQSRGALAILCMAAKSSTEILGSHLQDIIDIGFGRWAKVEPLLARTACIAIQR LSEEDKKKLLLSNGSRIFGILESLITGFGLPDNIWYAAADKAIGAVYMIHPTPENLAA DLVKKSLSSVIDGSTVDALHNDINSGTCSVLTTVQVAKLSRYLFVTSHVAMNQLVYVE SCVRKIQKQKSNKEKVDAEGTANAETQKDSSINAELGLAASEDAVLDTLAERAEKEIV SSGSSEKNLIGECAPFLSKLCRNFSLMQKYPVLQASAMLALCRFMIIDANYCDANLQL LFTVVENAPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLRDPSVSVRKNAVLVL SHLILNDMMKVKGYINEMAVRVEDHDGRISNLAKLFFHELSKKGSNPIYNLLPDILGK LFTQDLQKESFCNIMQFLIGSIKKDKQMESLVEKLCNRFSGVTG" mRNA complement(join(24987842..24988190,24988288..24988355, 24988769..24988945,24989084..24989725,24990261..24990452, 24990609..24991794,24991888..24992048,24992139..24992464, 24992930..24993175)) /locus_tag="TCM_024372" /product="Binding isoform 8" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s03990.1" /inference="similar to AA sequence:ricco:28448.m000358" /note="transcript variant 8; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1464t2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc293t8; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc293t9" CDS complement(join(24987862..24987865,24988288..24988355, 24988769..24988945,24989084..24989725,24990261..24990452, 24990609..24991794,24991888..24992048,24992139..24992464, 24992930..24993074)) /locus_tag="TCM_024372" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:28448.m000358" /codon_start=1 /product="Binding isoform 5" /protein_id="EOY09038.1" /db_xref="TAIR:AT3G57060.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M1J4" /translation="MAPHFVFPPNLRALEEQEEDEHQHNRLSVQNPIDLDPLRPAELE EFVKGVSFDLSDKELFCIEEQDVFDRVYTLVRSFSSLTPSCKFILVESLRSNLSVLLP NVDSLVRVSQGQDDNETPMLDRVTSHRNAFKIYTFFLLHIILAEEFNNGSSNNPKVTA SSRKKQPVNLWNWELQRGRMLNLIANSLEINLALLFGSADPDENYLSFIVKNSFSMFE NTMLLKDSETKDALCRIIGACATKYHYTEQSSASIMHLIHKYDFVVIHMADAVALAEK KYGDGTLAISLIREIGRTNPKAYVKDTAGAENVGRFLVELADRLPKLMSTNIGLLVPH FGGESYKIRNALVGVLGKLVAKAFKDVEGEVSSKSVRLRTKQAMLEILLERCRDVSAY TRSRVLQVWAELCEEHSVSIGLWNEVATVAAGRLEDKSAIVRKSTLNLLIMMLQHNPF GPQLRIASFEATLEQYKKKLNELEPDKLSEGMKDGVHSDNDSCNDEGEVDNANAEEVA NHQSESLTDSLPHMEQEIAHKDSSVPDVGNLEQTRALVASLEAGLKFSKCISATMPTL VQLMASSSATDVENTILLLMRCRQFQIDGAEACLRKMLPLVFSQDKSIYEAVENAFVT IYIRKNLVETAKNLLNLAIDSNVGDLAALEFIVGALVSKGDISSGVISALWDLFCFNV NGTTAEQSRGALAILCMAAKSSTEILGSHLQDIIDIGFGRWAKVEPLLARTACIAIQR LSEEDKKKLLLSNGSRIFGILESLITGFGLPDNIWYAAADKAIGAVYMIHPTPENLAA DLVKKSLSSVIDGSTVDALHNDINSGTCSVLTTVQVAKLSRYLFVTSHVAMNQLVYVE SCVRKIQKQKSNKEKVDAEGTANAETQKDSSINAELGLAASEDAVLDTLAERAEKEIV SSGSSEKNLIGECAPFLSKLCRNFSLMQKYPVLQASAMLALCRFMIIDANYW" CDS complement(join(24987862..24987865,24988288..24988355, 24988769..24988945,24989084..24989725,24990261..24990452, 24990609..24991794,24991888..24992048,24992139..24992464, 24992930..24993074)) /locus_tag="TCM_024372" /note="encoded by transcript variant 7; alternatively spliced; dbxref ricco:28448.m000358" /codon_start=1 /product="Binding isoform 5" /protein_id="EOY09040.1" /db_xref="TAIR:AT3G57060.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M1J4" /translation="MAPHFVFPPNLRALEEQEEDEHQHNRLSVQNPIDLDPLRPAELE EFVKGVSFDLSDKELFCIEEQDVFDRVYTLVRSFSSLTPSCKFILVESLRSNLSVLLP NVDSLVRVSQGQDDNETPMLDRVTSHRNAFKIYTFFLLHIILAEEFNNGSSNNPKVTA SSRKKQPVNLWNWELQRGRMLNLIANSLEINLALLFGSADPDENYLSFIVKNSFSMFE NTMLLKDSETKDALCRIIGACATKYHYTEQSSASIMHLIHKYDFVVIHMADAVALAEK KYGDGTLAISLIREIGRTNPKAYVKDTAGAENVGRFLVELADRLPKLMSTNIGLLVPH FGGESYKIRNALVGVLGKLVAKAFKDVEGEVSSKSVRLRTKQAMLEILLERCRDVSAY TRSRVLQVWAELCEEHSVSIGLWNEVATVAAGRLEDKSAIVRKSTLNLLIMMLQHNPF GPQLRIASFEATLEQYKKKLNELEPDKLSEGMKDGVHSDNDSCNDEGEVDNANAEEVA NHQSESLTDSLPHMEQEIAHKDSSVPDVGNLEQTRALVASLEAGLKFSKCISATMPTL VQLMASSSATDVENTILLLMRCRQFQIDGAEACLRKMLPLVFSQDKSIYEAVENAFVT IYIRKNLVETAKNLLNLAIDSNVGDLAALEFIVGALVSKGDISSGVISALWDLFCFNV NGTTAEQSRGALAILCMAAKSSTEILGSHLQDIIDIGFGRWAKVEPLLARTACIAIQR LSEEDKKKLLLSNGSRIFGILESLITGFGLPDNIWYAAADKAIGAVYMIHPTPENLAA DLVKKSLSSVIDGSTVDALHNDINSGTCSVLTTVQVAKLSRYLFVTSHVAMNQLVYVE SCVRKIQKQKSNKEKVDAEGTANAETQKDSSINAELGLAASEDAVLDTLAERAEKEIV SSGSSEKNLIGECAPFLSKLCRNFSLMQKYPVLQASAMLALCRFMIIDANYW" CDS complement(join(24987962..24988190,24988288..24988355, 24988769..24988945,24989084..24989725,24990261..24990452, 24990609..24991794,24991888..24992048,24992139..24992464, 24992930..24993074)) /locus_tag="TCM_024372" /note="encoded by transcript variant 8; alternatively spliced; dbxref ricco:28448.m000358" /codon_start=1 /product="Binding isoform 8" /protein_id="EOY09041.1" /db_xref="TAIR:AT3G57060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M1J4" /translation="MAPHFVFPPNLRALEEQEEDEHQHNRLSVQNPIDLDPLRPAELE EFVKGVSFDLSDKELFCIEEQDVFDRVYTLVRSFSSLTPSCKFILVESLRSNLSVLLP NVDSLVRVSQGQDDNETPMLDRVTSHRNAFKIYTFFLLHIILAEEFNNGSSNNPKVTA SSRKKQPVNLWNWELQRGRMLNLIANSLEINLALLFGSADPDENYLSFIVKNSFSMFE NTMLLKDSETKDALCRIIGACATKYHYTEQSSASIMHLIHKYDFVVIHMADAVALAEK KYGDGTLAISLIREIGRTNPKAYVKDTAGAENVGRFLVELADRLPKLMSTNIGLLVPH FGGESYKIRNALVGVLGKLVAKAFKDVEGEVSSKSVRLRTKQAMLEILLERCRDVSAY TRSRVLQVWAELCEEHSVSIGLWNEVATVAAGRLEDKSAIVRKSTLNLLIMMLQHNPF GPQLRIASFEATLEQYKKKLNELEPDKLSEGMKDGVHSDNDSCNDEGEVDNANAEEVA NHQSESLTDSLPHMEQEIAHKDSSVPDVGNLEQTRALVASLEAGLKFSKCISATMPTL VQLMASSSATDVENTILLLMRCRQFQIDGAEACLRKMLPLVFSQDKSIYEAVENAFVT IYIRKNLVETAKNLLNLAIDSNVGDLAALEFIVGALVSKGDISSGVISALWDLFCFNV NGTTAEQSRGALAILCMAAKSSTEILGSHLQDIIDIGFGRWAKVEPLLARTACIAIQR LSEEDKKKLLLSNGSRIFGILESLITGFGLPDNIWYAAADKAIGAVYMIHPTPENLAA DLVKKSLSSVIDGSTVDALHNDINSGTCSVLTTVQVAKLSRYLFVTSHVAMNQLVYVE SCVRKIQKQKSNKEKVDAEGTANAETQKDSSINAELGLAASEDAVLDTLAERAEKEIV SSGSSEKNLIGECAPFLSKLCRNFSLMQKYPVLQASAMLALCRFMIIDANYCDANLQL LFTVVENAPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLRDPSVSVRKNAVLVL SHLILNDMMKV" mobile_element complement(24996132..24999828) /note="source:INTACT46F_F12_scaffold_1-int 6498 10171" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(24999829..25006944) /note="source:INTACT706_F73_scaffold_9-int 1 7088" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25007596..25010308 /note="source:CACAO_M_E84995_F60_scaffold_10 7987 10694" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25010298..25010310 /note="source:CACAO_M_E84995_F60_scaffold_10 2393 2400" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25010311..25013513) /note="source:CACAO_M_E12798_F82_scaffold_3 1 3303" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25013514..25014258 /note="source:CACAO_M_E84995_F60_scaffold_10 10700 11467" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 25014278..25043150 /locus_tag="TCM_024375" /note="dbxref CacaoGD:Thecc1EG024375" mRNA join(25014278..25014343,25014698..25014754, 25032426..25032569,25042003..25042213,25042346..25043150) /locus_tag="TCM_024375" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s04060.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001540t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s04060.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g12153t00001" mobile_element 25017393..25017453 /note="source:CACAO_M_E58877_F5_scaffold_9 23643 23702" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25017399..25021488) /note="source:CACAO_M_E44543_F5_scaffold_6 5320 9255" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25021491..25021936) /note="source:CACAO_M_E49805_F5_scaffold_7 4920 5365" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25021933..25026492 /note="source:INTACT12_F107_scaffold_9-int 3790 8444" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25025120..25026651) /note="source:CACAO_M_E43348_F5_scaffold_5 1 1543" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25031815..25031869) /note="source:CACAO_M_E22186_F143_scaffold_3 9932 9986" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25032227..25033446 /note="source:INTACT591_F264_scaffold_1-int 19743 20975" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25033436..25033968 /note="source:CACAO_M_E22398_F15_scaffold_3 7755 8286" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25034495..25036151) /note="source:CACAO_M_E33870_F15_scaffold_4 394 2050" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25036252..25036630 /note="source:INTACT139F_F15_scaffold_2-int 10133 10511" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25036631..25036954 /note="source:INTACT591_F264_scaffold_1-int 1201 1514" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(25042064..25042213,25042346..25042978) /locus_tag="TCM_024375" /note="paralog of Thecc1EG001540t1" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein" /protein_id="EOY09042.1" /db_xref="Phytozome:POPTR_0006s04060.1" /db_xref="TAIR:AT2G41380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H953" /translation="MSNLFIKQAKHYAVARPSYAPELFQFIASKTPEHDLAWDVGTGS GQAAQSLAEIYKKVIATDTSPTQLELASKLPNIQYQHTSPVMSLAEVEQKVAAASSVD LVTVAQAIHWFDLPVFYKQVKMVLKKPHGLIAAWCYTTPEVNDYVDKILQRFYRNPYW DPQRKLVDHKYIGIDFPFEPVDGADSTGPFEFANERLMGLEDYFTYLRSWSAYQKAKE KGVELLSQDVVEDFKRAWKEDGNNDQKRVNFPVYLRIGKVGL" mobile_element complement(25044883..25044975) /note="source:CACAO_M_S_E119191_F3_scaffold_9 10640 10734" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25046746..25048659) /note="source:CACAO_M_S_E51565_F2_scaffold_4 12069 13997" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25048660..25050322) /note="source:CACAO_M_E1841_F5_scaffold_1 22013 22974" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25050927..25050992 /note="source:CACAO_M_E5899_F5_scaffold_2 20734 20790" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25052277..25052311) /note="source:CACAO_M_E1841_F5_scaffold_1 3093 3127" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25052305..25052729 /note="source:INTACT105_F2_scaffold_2-int 1915 2337" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25052351..25056470) /note="source:CACAO_M_E34036_F2_scaffold_4 1 4119" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25059405..25060073) /note="source:CACAO_M_E52846_F15_scaffold_8 2212 2879" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25060427..25060903 /note="source:CACAO_M_E69740_F15_scaffold_9 661 1137" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25061215..25062278) /note="source:CACAO_M_E84129_F15_scaffold_10 1 1063" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25062126..25062301 /note="source:INTACT591_F264_scaffold_1-int 16573 16742" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(25063509..25065564) /locus_tag="TCM_024379" /note="dbxref CacaoGD:Thecc1EG024379" mRNA complement(25063509..25065564) /locus_tag="TCM_024379" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene21898" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024383t1" /inference="similar to AA sequence:frave:gene21898" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5274t2" CDS complement(25063822..25065210) /locus_tag="TCM_024379" /note="dbxref frave:gene21898; paralog of Thecc1EG024383t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09043.1" /db_xref="TAIR:AT3G50170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TIK8" /translation="MSSNERHPGEVRVPIHEIEHSAFIRDERTKLKSALREAQKQESD SSQRAKPLIQRVPPVLIGIKEDFKKYFEPRLVALGPLHHGKPQFERAEHTKRKLAGLF ANENETTDEVLFNKIMAEIKDLKQCYNPEDIKDYDDEKLAWMFFVDGCAVLFAVHYGL QGDFKKLNIKADLLVFAQLDLFLLENQLPYRVLNILIGSTKDPQMWEQSITKFVGNNL ITNIPDGKKSQHTDEEEKQEYTHLLERLRTKHLTGKKEESSSSMIGRLLLSCGDNRKH RKTFRSVKELKESGIGVGPSETNNLKNISFYCNFLGSLKMPRILVDDSTASKFLNLVA LEMCRDFENDFAVTSYLYFLDSLIDTAEDVKEMRVTGMLHNYLGSDEEVADLFNKLSR DLVPDQAMYKDVTDNIHKYCNNPWTTAMAQAYYTHFSSPWTFLGLLAALLGLLFSAIQ AYYAFPNHKRSD" mobile_element 25068197..25071000 /note="source:INTACT159_F2_scaffold_6-int 1015 3831" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25070999..25071754 /note="source:INTACT170F_F2_scaffold_3-int 2559 3319" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25071754..25071783) /note="source:CACAO_on_E193_scaffold_6 2397 2426" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(25071786..25072510) /note="source:CACAO_M_E58324_F9_scaffold_9 9491 10221" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25073117..25073998) /note="source:CACAO_M_E58324_F9_scaffold_9 7667 8560" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25073997..25074313) /note="source:CACAO_on_E193_scaffold_6 2083 2399" /mobile_element_type="transposon:TIR/Mutator" mobile_element 25075138..25077210 /note="source:CACAO_Mutator_E1998_scaffold_9 7823 10108" /mobile_element_type="transposon:TIR/Mutator" mobile_element 25077248..25077356 /note="source:CACAO_Mutator_E1998_scaffold_9 10099 10206" /mobile_element_type="transposon:TIR/Mutator" mobile_element 25077349..25077710 /note="source:CACAO_Mutator_E1998_scaffold_9 11253 11572" /mobile_element_type="transposon:TIR/Mutator" gene complement(25077700..25079575) /locus_tag="TCM_024383" /note="dbxref CacaoGD:Thecc1EG024383" mRNA complement(25077700..25079575) /locus_tag="TCM_024383" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033580001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024379t1" /inference="similar to AA sequence:frave:gene21898" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5274t3" CDS complement(25077972..25079351) /locus_tag="TCM_024383" /note="dbxref frave:gene21898; paralog of Thecc1EG024379t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09044.1" /db_xref="TAIR:AT3G50170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TIK8" /translation="MSSNERHPGEVRVPMPRIEHSPFITDERAKLKSALREAQKQESD SYQRAKPLIQRVPPVLIGIKEDFKKYFEPRLVALGPLHHGKPQFEQAEHTKRKLAALF ANENETTDEVLFNKIMAEIRDLKQCYNPEDIKDYDDEKLAWMFFVDGCAVLYAVHYGL QGKFKKLNTKADLLVFAQLDLFLLENQLPYRVLNILIGSTKEPQMWEQSITEFVGNNL ITNIPDGKKSQHTDEEEKQEYTHLLERLRTKLLTGKKEESSSSMIGRLLLSCGDIRKH RKTFRSVKELKESGIGVGPSETNNLKNISFYCNFLGSLKMPRILVDDSTASKFLNLVA LEMCRDFENDFAVTSYLYFLDSLIDTAEDVKEMRVTGMLHNYLGSDEEVADLFNKLSR DLVPDQAMYKDVTDNIHKYCNNPCTTAMAQAYYTHFSSPWTFLGFLGAIIGLLFSAIQ AYYSFPDNK" mobile_element 25081818..25082174 /note="source:CACAO_Mutator_E1149_scaffold_5 1 353" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(25081913..25082839) /note="source:CACAO_on_E193_scaffold_6 11078 11903" /mobile_element_type="transposon:TIR/Mutator" mobile_element 25082841..25083784 /note="source:CACAO_M_E1841_F5_scaffold_1 9632 10619" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25084148..25085380 /note="source:CACAO_M_E1841_F5_scaffold_1 13932 15162" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25085380..25093710 /note="source:CACAO_on_S_E176_scaffold_5 762 8337" /mobile_element_type="transposon:TIR/Mutator" gene 25095686..25098952 /locus_tag="TCM_024386" /note="dbxref CacaoGD:Thecc1EG024386" mRNA join(25095686..25095955,25096388..25096526, 25097263..25097384,25098460..25098523,25098609..25098952) /locus_tag="TCM_024386" /product="Tetratricopeptide repeat (TPR)-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Sb09g018990.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040860t1" /inference="similar to AA sequence:Phytozome:Glyma03g28500.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g06434t00001" CDS join(25095863..25095955,25096388..25096526, 25097263..25097384,25098460..25098523,25098609..25098694) /locus_tag="TCM_024386" /note="paralog of Thecc1EG040860t1" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein" /protein_id="EOY09045.1" /db_xref="Phytozome:Glyma03g28500.1" /db_xref="TAIR:AT3G57090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M1J1" /translation="MEAKIGKFFESVGSFFGGADQIPWCDRDIIVACEREVADAAKGD LEELKSESIMRLSWALVHSRQAEDVQRGIAMLEASLANSSSPLQHREKLYLLAVGYYR TGEYSRSRQLVEQCLEIAPDWRQALALKKTVEDRIAKDGVIGIGITATAVGLIAGGIA AALSRKK" gene complement(25099651..25103536) /locus_tag="TCM_024387" /note="dbxref CacaoGD:Thecc1EG024387" mRNA complement(join(25099651..25100151,25100432..25100545, 25103204..25103536)) /locus_tag="TCM_024387" /product="Eukaryotic rpb5 RNA polymerase subunit family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:28448.m000362" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045327t2" /inference="similar to AA sequence:Phytozome:POPTR_0016s03800.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02387t00002; inference alignment:Newbler:10:TSA:cgbaB_g02387t00001" mRNA complement(join(25099651..25100151,25100432..25100545, 25101812..25101988,25103204..25103536)) /locus_tag="TCM_024387" /product="Eukaryotic rpb5 RNA polymerase subunit family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:28448.m000362" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045327t2" /inference="similar to AA sequence:ricco:28448.m000362" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02387t00001; inference alignment:Newbler:10:TSA:cgbaB_g02387t00001" CDS complement(join(25100026..25100151,25100432..25100545, 25103204..25103473)) /locus_tag="TCM_024387" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG045327t2" /codon_start=1 /product="Eukaryotic rpb5 RNA polymerase subunit family protein isoform 2" /protein_id="EOY09047.1" /db_xref="Phytozome:POPTR_0016s03800.1" /db_xref="TAIR:AT3G57080.1" /translation="MEGNGLEGDGSNGEALGKCLSGVVDDGSTESHRYYLSRRTVLEM LRDRGYAVPISEINLSLQEFRAIYGQSPDFDRLRLSATHKTDPSKRITDLLVNITKHV LKPKHQVLTEQEKQKLLQKYSIEEKQLPRLLKKDAIARYYGYERGQVVKVMYDGEITQ SHVTYRCVW" CDS complement(join(25100026..25100151,25100432..25100545, 25101812..25101988,25103204..25103473)) /locus_tag="TCM_024387" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28448.m000362; paralog of Thecc1EG045327t2" /codon_start=1 /product="Eukaryotic rpb5 RNA polymerase subunit family protein isoform 1" /protein_id="EOY09046.1" /db_xref="TAIR:AT3G57080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZVB9" /translation="MEGNGLEGDGSNGEALGKCLSGVVDDGSTESHRYYLSRRTVLEM LRDRGYAVPISEINLSLQEFRAIYGQSPDFDRLRLSATHKTDPSKRILVVFYGPGMVK VSGIRLIAGLITNKESLTGLILVLQNHITNQALKALDLFSFKVEIFQITDLLVNITKH VLKPKHQVLTEQEKQKLLQKYSIEEKQLPRLLKKDAIARYYGYERGQVVKVMYDGEIT QSHVTYRCVW" gene complement(25105183..25106897) /locus_tag="TCM_024388" /note="dbxref CacaoGD:Thecc1EG024388" mRNA complement(25105183..25106897) /locus_tag="TCM_024388" /product="Glutaredoxin family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s04010.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s04010.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5284t1" CDS complement(25105230..25106417) /locus_tag="TCM_024388" /codon_start=1 /product="Glutaredoxin family protein, putative" /protein_id="EOY09048.1" /db_xref="Phytozome:POPTR_0006s04010.1" /db_xref="TAIR:AT3G57070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M1J3" /translation="MGCSASRPNTTLFTKSNNSPEDPYSCSSLESMVSSHSSPPPVPR ALSLPTPLVHHPPLRKGDTHHLVSLTSTTYGSLLLIDTKTSEMSSQDFSDHQPNQPPH HNNSPVHADQDESLSPDSVINTWELMDGLDDDCDFDLGKTNSFVNTHSDELSSKSNAF NSKSLDVPVKKLEDYKPTKPSLTKPLWKHLSEESLLSKLDPNVVSSYRRALSSRQLGS NESRSTISVGSSPSCSSLSDSWFKVPSTENRIVLYFTSLRGIRKTYEDCCSVRMIFRG FRVPVDERDISMDCVYRNELQSLLGGKVICLPQVFIKGKHVGGVEEIKQLNESGELAK LLDGFPVRDPRIVCEGCGDARFVPCPKCNGSRKVFEEDEGKLIRCPDCNENGLIRCPG CCS" gene complement(25118758..25122309) /locus_tag="TCM_024389" /note="dbxref CacaoGD:Thecc1EG024389" mRNA complement(join(25118758..25118856,25118961..25119164, 25119357..25119452,25119807..25122309)) /locus_tag="TCM_024389" /product="Pentatricopeptide repeat (PPR) superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033596001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012708t3" /inference="similar to AA sequence:Phytozome:POPTR_0016s03790.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1751t1; alternateUTRof:Thecc1EG024389t1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1751t2" mRNA complement(join(25118848..25118869,25118961..25119164, 25119357..25119452,25119807..25122307)) /locus_tag="TCM_024389" /product="Pentatricopeptide repeat (PPR) superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033596001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012708t3" /inference="similar to AA sequence:Phytozome:POPTR_0016s03790.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1751t2" CDS complement(25120367..25122262) /locus_tag="TCM_024389" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG012708t3" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein, putative isoform 1" /protein_id="EOY09049.1" /db_xref="Phytozome:POPTR_0016s03790.1" /db_xref="TAIR:AT2G35030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O64766" /translation="MLVIPRASISFRYFNKLTILLSLNALHSVKSKTTIPSIDYSANS SVAQSNWLITKLSTEGKISQVRKLFDQMPDRDKDVITWTALISGYIKLGLIEEARRLF DRVDSKKNVVTWTAMLSGYMRSNRILEAKRLFDEMPVKNVVSWNTMVDGYVQNGMVGK AFELFQEMPERNVVSWNTMLTALAQCGRVEDARGLFDRMPKRDVISWTAMVAGLAKNG KIDEARRVFDRMPERNVVSWNAMITGYSQNMKLDEAFELFERMPERNLSSWNAMITGF IQNGELKRAEKLFDKVPRKNVVSWTTMITGYVQDEQSEEALKIFSKMMAEDGVKPNEG TFVSVLSACSDLAGLFEGQQVHQTLAKTIYQCSEIVVSAIINMYSKCGELNAARRMFD DGLISQRDVVSWNGMIAAYAHHGCGGEAISLFKKMSGFGFKPNGATYVALLSACSHSG MVEDGLRYFDELVRDKSIQVKEDHYACLVDLCSRAGKLKEAFEFIMRLGTKPSASIWE ALLAGCHVHGDVNLGKLAAEKILETEPENVGTHMLLSNIYASRGKWRDAGKVRLKMKN KGLKKQPGCSWIEVGNKVHVFVAGAKSRCHANLLYPLLCELHAKMRKAGSIPNNDYMK DDDFLVI" CDS complement(25120367..25122262) /locus_tag="TCM_024389" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG012708t3" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein, putative isoform 1" /protein_id="EOY09050.1" /db_xref="Phytozome:POPTR_0016s03790.1" /db_xref="TAIR:AT2G35030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O64766" /translation="MLVIPRASISFRYFNKLTILLSLNALHSVKSKTTIPSIDYSANS SVAQSNWLITKLSTEGKISQVRKLFDQMPDRDKDVITWTALISGYIKLGLIEEARRLF DRVDSKKNVVTWTAMLSGYMRSNRILEAKRLFDEMPVKNVVSWNTMVDGYVQNGMVGK AFELFQEMPERNVVSWNTMLTALAQCGRVEDARGLFDRMPKRDVISWTAMVAGLAKNG KIDEARRVFDRMPERNVVSWNAMITGYSQNMKLDEAFELFERMPERNLSSWNAMITGF IQNGELKRAEKLFDKVPRKNVVSWTTMITGYVQDEQSEEALKIFSKMMAEDGVKPNEG TFVSVLSACSDLAGLFEGQQVHQTLAKTIYQCSEIVVSAIINMYSKCGELNAARRMFD DGLISQRDVVSWNGMIAAYAHHGCGGEAISLFKKMSGFGFKPNGATYVALLSACSHSG MVEDGLRYFDELVRDKSIQVKEDHYACLVDLCSRAGKLKEAFEFIMRLGTKPSASIWE ALLAGCHVHGDVNLGKLAAEKILETEPENVGTHMLLSNIYASRGKWRDAGKVRLKMKN KGLKKQPGCSWIEVGNKVHVFVAGAKSRCHANLLYPLLCELHAKMRKAGSIPNNDYMK DDDFLVI" gene complement(25122978..25127661) /locus_tag="TCM_024390" /note="dbxref CacaoGD:Thecc1EG024390" mRNA complement(join(25122978..25123253,25123371..25123411, 25127238..25127661)) /locus_tag="TCM_024390" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s03780.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02968t00002" CDS complement(25127285..25127431) /locus_tag="TCM_024390" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09051.1" /translation="MAMPWVMTLWMAEMVWIALSGWVSSCLTIADEVADSLRSGDIGP FHVG" gene complement(25128368..25135480) /locus_tag="TCM_024391" /note="dbxref CacaoGD:Thecc1EG024391" mRNA complement(join(25128368..25128717,25130412..25130594, 25131677..25131776,25134592..25134689,25135134..25135202, 25135297..25135480)) /locus_tag="TCM_024391" /product="Transport protein particle (TRAPP) component isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s44430.1" /inference="similar to AA sequence:Phytozome:GSVIVT01002004001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01155t00002; inference alignment:Newbler:10:TSA:cgbaL_g01155t00002" mRNA complement(join(25128368..25128717,25130412..25130594, 25131677..25131776,25134592..25134689,25135134..25135480)) /locus_tag="TCM_024391" /product="Transport protein particle (TRAPP) component isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s44430.1" /inference="similar to AA sequence:Phytozome:GSVIVT01002004001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01155t00001; alternateUTRof:Thecc1EG024391t1; inference alignment:Newbler:10:TSA:cgbaL_g01155t00002; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc241t2" CDS complement(join(25128595..25128717,25130412..25130594, 25131677..25131776,25134592..25134689,25135134..25135190)) /locus_tag="TCM_024391" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Transport protein particle (TRAPP) component isoform 1" /protein_id="EOY09052.1" /db_xref="Phytozome:GSVIVT01002004001" /db_xref="TAIR:AT5G54750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K1U5" /translation="MAPAAPRSGDAIFASVERVNAELFTLTYGAIVRQLLTDLEEVEE VNKQLDQMGYNIGIRLIDEFLAKSNVSRCVDFKETAEVIAKVGFKMFLGVTASVTNWD ADGTCCSIVLEDNPLVDFVELPDTCQGLYYCNILSGVIRGSLEMVSMKTEVTWIRDML RGDDAYELQVKLLKQVPEEYPYKDDE" CDS complement(join(25128595..25128717,25130412..25130594, 25131677..25131776,25134592..25134689,25135134..25135190)) /locus_tag="TCM_024391" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Transport protein particle (TRAPP) component isoform 1" /protein_id="EOY09053.1" /db_xref="Phytozome:GSVIVT01002004001" /db_xref="TAIR:AT5G54750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K1U5" /translation="MAPAAPRSGDAIFASVERVNAELFTLTYGAIVRQLLTDLEEVEE VNKQLDQMGYNIGIRLIDEFLAKSNVSRCVDFKETAEVIAKVGFKMFLGVTASVTNWD ADGTCCSIVLEDNPLVDFVELPDTCQGLYYCNILSGVIRGSLEMVSMKTEVTWIRDML RGDDAYELQVKLLKQVPEEYPYKDDE" gene complement(25141045..25143565) /locus_tag="TCM_024394" /note="dbxref CacaoGD:Thecc1EG024394" mRNA complement(join(25141045..25141197,25142316..25142467, 25143027..25143565)) /locus_tag="TCM_024394" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.44 coverage" CDS complement(join(25141111..25141197,25142316..25142467, 25143027..25143114)) /locus_tag="TCM_024394" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09054.1" /translation="MSASVAFASQSSKATKRKWKYQEDVALVSLEFSTIQPQTSALRS EDTSTRKKRRLNEVCDPVTFESSITIATIMGENLKELGSILLNLLLPLGIENREEWRL WLLPFR" mobile_element 25143186..25144254 /note="source:CACAO_M_E43764_F33_scaffold_5 1 1069" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25145763..25146143 /note="source:CACAO_M_E43764_F33_scaffold_5 1070 1450" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25151065..25151139 /note="source:scaffold_5_CACTA_0602 125 201" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25151151..25154242) /note="source:CACAO_M_S_E51220_F51_scaffold_4 1 3092" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25154133..25159191 /note="source:scaffold_5_CACTA_0602 1 5059" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25160214..25165181 /note="source:CACAO_M_E43766_F2_scaffold_5 1 4968" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25167987..25168182) /note="source:scaffold_5_CACTA_0602 3546 3754" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25171455..25172399 /note="source:INTACT277_F12_scaffold_9-int 3069 4025" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25172500..25174438) /note="source:CACAO_M_E12297_F14_scaffold_3 6342 8290" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25174868..25181343 /note="source:CACAO_M_E65323_F12_scaffold_9 1 6507" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25181341..25181776) /note="source:scaffold_9_CACTA_0941 6444 6879" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25181763..25181839 /note="source:CACAO_M_E59115_F73_scaffold_9 1429 1510" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25181840..25184570 /note="source:CACAO_M_S_E17011_F73_scaffold_3 1 2723" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25187216..25187606) /note="source:CACAO_M_E84995_F60_scaffold_10 128 523" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25187604..25187676) /note="source:CACAO_M_E84995_F60_scaffold_10 10213 10286" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25191569..25191700 /note="source:INTACT127_F12_scaffold_6-int 8652 8782" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25195080..25198037 /note="source:CACAO_M_E43772_F246_scaffold_5 1 2947" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25203268..25204869) /note="source:INTACT49_F22_scaffold_9-int 8558 10163" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25204865..25207033 /note="source:CACAO_M_E45234_F22_scaffold_6 7953 10083" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 25209135..25216161 /locus_tag="TCM_024404" /note="dbxref CacaoGD:Thecc1EG024404" mRNA join(25209135..25209532,25209722..25209770, 25210328..25210419,25212992..25213064,25214341..25214461, 25214753..25214858,25215686..25216161) /locus_tag="TCM_024404" /product="Pyrroline-5-carboxylate reductase isoform 1" /inference="alignment:exonerate-protein:2:frave:gene21897" /inference="similar to AA sequence:Phytozome:POPTR_0006s04100.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02393t00001_C1" CDS join(25209332..25209532,25209722..25209770, 25210328..25210419,25212992..25213064,25214341..25214461, 25214753..25214858,25215686..25215874) /locus_tag="TCM_024404" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Pyrroline-5-carboxylate reductase isoform 1" /protein_id="EOY09055.1" /db_xref="Phytozome:POPTR_0006s04100.1" /db_xref="TAIR:AT5G14800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04016" /translation="MEAAPIQSESFKLGFIGAGKMAESIARGVVQSGVLPPNRISTAI NSNPNRGIAFQSIGVSLLPHNSDVVEDSDIVIFSVKPQVVKNVVLQLRPLLSKKKLLV SIAAGVKLKDLQEWAGHGRFIRVMPNTPSAVGEAASVMSMGGAATEEDGELVAKLFGS VGKIWRADEKLFDAITGLSGSGPAYIYLAIEALADGGVAAGLPRELALGLASQTVLGA ASMAINSGKHPGQLKDEVTSPGGTTIAGIHELEKSGFRGTLMNAVVAATKRSQELSKS " mRNA join(<25209745..25209766,25210080..25210082, 25210328..25210419,25212992..25213064,25214341..25214461, 25214729..25214858,25215686..25215990) /locus_tag="TCM_024404" /product="Pyrroline-5-carboxylate reductase isoform 2" /inference="alignment:exonerate-protein:2:frave:gene21897" /inference="similar to AA sequence:Phytozome:POPTR_0006s04100.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc438t33; inference alignment:Newbler:10:TSA:cgbaP1_g02393t00001_C1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc517t15" CDS join(<25209745..25209766,25210080..25210082, 25210328..25210419,25212992..25213064,25214341..25214461, 25214729..25214858,25215686..25215874) /locus_tag="TCM_024404" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Pyrroline-5-carboxylate reductase isoform 2" /protein_id="EOY09056.1" /db_xref="Phytozome:POPTR_0006s04100.1" /db_xref="TAIR:AT5G14800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04016" /translation="HFLCETPSVKNVVLQLRPLLSKKKLLVSIAAGVKLKDLQEWAGH GRFIRVMPNTPSAVGEAASVMSMGGAATEEDGELVAKLFGSVGKIWRADEKLFDAITG LRYMFLKILSGSGPAYIYLAIEALADGGVAAGLPRELALGLASQTVLGAASMAINSGK HPGQLKDEVTSPGGTTIAGIHELEKSGFRGTLMNAVVAATKRSQELSKS" mobile_element complement(25211603..25211765) /note="source:CACAO_Mutator_E1998_scaffold_9 11086 11248" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(25211765..25211881) /note="source:CACAO_Mutator_E1998_scaffold_9 10407 10522" /mobile_element_type="transposon:TIR/Mutator" mobile_element 25218211..25218335 /note="source:INTACT288_F14_scaffold_2-int 5186 5310" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 25219990..25221991 /locus_tag="TCM_024407" /note="dbxref CacaoGD:Thecc1EG024407" mRNA 25219990..25221991 /locus_tag="TCM_024407" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024383t1" /inference="similar to AA sequence:frave:gene21898" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.28 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc7946t1" CDS 25220115..25221509 /locus_tag="TCM_024407" /note="dbxref frave:gene21898; paralog of Thecc1EG024383t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09057.1" /db_xref="TAIR:AT3G50150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TIK8" /translation="MFRKGEPSWKIQLPVYQCDQEESQFSSREVENFSCFRALKESSK DKSVPAQSSKSKPLIQRVPSTLSERKDYKKYFEPRVVAIGPLHHKNSRLQPAEKAKLD LAVQFTNERDVSEQELYKKIKKEMRDLKKCYRPKDIEDYDDEELAWMFFVDGCAALHA MHYTRLEKQKDLNIKVDLLAFAQLDLFMLENQLPFRVLELLMSSVKNGKHLRESINLF IDDKIKKTLAAGTEQPPLEAGDQEHTHLLGLLRERLLANPKQTKKPKNTLIGQVLRSL GPTEADKTFRSINELKEAGIRVSRSETSSLRDVNFSVGFLGTLTIPRIVADDSTGSKF MNLVAYEMCPDFENDFGVTSYLCFLDSLIDKAQDVKELRHAGMLLNYMGSDEEVAHLF NNITTDLVPDLGMYRGVTEDIRKYCDNPWTTCIAKAYYTHFSTPWSILAFLGAVLGLI FTAIQAYYSMRRKG" gene 25223943..25226078 /locus_tag="TCM_024408" /note="dbxref CacaoGD:Thecc1EG024408" mRNA 25223943..25226078 /locus_tag="TCM_024408" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:frave:gene21898.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024407t1" /inference="similar to AA sequence:frave:gene21898" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5307t1" CDS 25224330..25225838 /locus_tag="TCM_024408" /note="dbxref frave:gene21898; paralog of Thecc1EG024407t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09058.1" /db_xref="TAIR:AT3G50170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TIK8" /translation="MSSPSTRDVVAEEVSTDQISRYNCNPQETIISVQDQGFRLSIGD LENLRSLDEAFKAAQIETPAPPLIQRVPSMLSGNKQFLKYFKPRVIAIGPLHHDDPSL RGAEKLKLKLAAHFLKNHVSRKEILYSKIKMDIANLKKSYDPKEIEQYYDDDEKLTWM FVLDGCAVLQAIYLRHDPQQKDEKGASNELNIKNDLLTFVYLDLFLLENQLPYRVLEL LTSSSNNGQRFKESIKSFIDDNVMTTAEMKKEQQRQQQQQKQGKQQKQQQEREPAHLL ELLRARLLAKTEEKESPVLSNWCNRLFKHIESSYQKGKTSHHSHTFRNVKELREAGIW LRPSETSCLKDISFNRVCCVGKLMLPPITVDDSTGPKFMNLIAYEMCPDFDNDFAVTS YICFLDSLIDEAEDVKALRDAGILYNGLGSDEEVAKLFNKMNTDLVPSPEIYSKLKTQ IQNHCRNMWITYAAQAYHTHFRSPWTFLAFVGAIAALCLSALQTYYTIHPKN" gene complement(25226631..25229315) /locus_tag="TCM_024409" /note="dbxref CacaoGD:Thecc1EG024409" mRNA complement(25226631..25229315) /locus_tag="TCM_024409" /product="Lycopene cyclase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s04160.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046933t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s04160.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13925t1" CDS complement(25227230..25228747) /locus_tag="TCM_024409" /note="paralog of Thecc1EG046933t1" /codon_start=1 /product="Lycopene cyclase" /protein_id="EOY09059.1" /db_xref="Phytozome:POPTR_0006s04160.1" /db_xref="TAIR:AT3G10230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q38933" /translation="MDTLLRTHNKLELLPQLHGFSEKACNLSSVRVQNQEPKFGPKKS YFKRGRGNTCVKASSTALLEMVPETKKENLEFELPIYDPSKGTVVDLAVVGGGPAGLA VAQRVSQAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVYIDDQK KKDLGRPYGRVNRKQLKSKMLQKCISNGVKFHQAKVIKVIHEESKSLLICNDGVTVQA TVVLDATGFSRCLVQYDKPYNPGYQMAYGILAEVEEHPFDVDKMVFMDWRDSHLINNK ELRERNSKIPTFLYAMPFSSDRIFLEETSLVARPGVPMNDIKERMVARLRHLGIKVKS IEEDEHCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVAESIVRCL DPGKSFLGNKLSAEVWRDLWPIERRRQREFFCFGMDILLKLDLPATRRFFDAFFDLEP HYWHGFLSSRLFLPELIVFGLSLFSHASTTSRLEIMAKGTLPLVNMINNLVQDRE" mobile_element complement(25229498..25229695) /note="source:CACAO_on_S_E58_scaffold_2 281 466" /mobile_element_type="transposon:TIR/Mutator" gene 25235156..25238320 /locus_tag="TCM_024410" /note="dbxref CacaoGD:Thecc1EG024410" mRNA join(25235156..25235672,25236970..25237234, 25237515..25237788,25238102..25238320) /locus_tag="TCM_024410" /product="SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033575001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034323t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033575001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1644t3" mRNA join(25235342..25235633,25236970..25237234, 25237515..25237788) /locus_tag="TCM_024410" /product="SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033575001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034323t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033575001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1548t2; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1644t3" CDS join(25235429..25235672,25236970..25237234, 25237515..25237749) /locus_tag="TCM_024410" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG034323t1" /codon_start=1 /product="SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein isoform 1" /protein_id="EOY09060.1" /db_xref="Phytozome:GSVIVT01033575001" /db_xref="TAIR:AT3G10210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SS33" /translation="MGSSSNDDFSVVVLASDLGIDARPFLANQDREIEDQDNWHDCSQ DFSDEDFPDLDVLHFFRLQGSDKSGNRIFRIVGKYFPAPVISGERLKKYIFHKICSEL PEGPFCIVYMHSTVQKEDNSPGVTILRWIYEELPSEIKDRLQVVYFIHPGLCSRLVFA TLGRLFLSGGLYWKIKYVSRLQYLWDDIKKGEVEIPEFVQNHDNVLEHRPLTDYGIEP DPLHLTEVPSAAYSLGRYEERLASREFMS" CDS join(25235429..25235633,25236970..25237234, 25237515..25237749) /locus_tag="TCM_024410" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG034323t1" /codon_start=1 /product="SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein isoform 2" /protein_id="EOY09061.1" /db_xref="Phytozome:GSVIVT01033575001" /db_xref="TAIR:AT3G10210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SS33" /translation="MGSSSNDDFSVVVLASDLGIDARPFLANQDREIEDQDNWHDCSQ DFSDEDFPDLDVLHFFRLQGSDKSAPVISGERLKKYIFHKICSELPEGPFCIVYMHST VQKEDNSPGVTILRWIYEELPSEIKDRLQVVYFIHPGLCSRLVFATLGRLFLSGGLYW KIKYVSRLQYLWDDIKKGEVEIPEFVQNHDNVLEHRPLTDYGIEPDPLHLTEVPSAAY SLGRYEERLASREFMS" gene 25238380..25239269 /locus_tag="TCM_024411" /note="dbxref CacaoGD:Thecc1EG024411" mRNA join(25238380..25238403,25238614..25238665, 25238782..25239269) /locus_tag="TCM_024411" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1688t2_C2" CDS join(25238638..25238665,25238782..25238999) /locus_tag="TCM_024411" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09062.1" /translation="MGCSQSKDQVLHGSHVATKSRGKSTVKDDKKIAMKTEMCHAEMV KQVTNERQGHGLDLRKEKLEAIEEEHESEDEPFLFSR" mobile_element complement(25239443..25239545) /note="source:CACAO_M_E59539_F98_scaffold_9 2038 2107" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25239445..25239535 /note="source:INTACT289_F14_scaffold_4-int 1329 1436" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25242874..25245585) /note="source:CACAO_Mutator_E1998_scaffold_9 6592 9305" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(25248766..25248780) /note="source:CACAO_M_E35511_F5_scaffold_5 18681 18689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25248781..25258809 /note="source:INTACT753_F322_scaffold_5-int 1 10029" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25258763..25258831) /note="source:CACAO_on_S_E58_scaffold_2 1921 1987" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(25259451..25259567) /note="source:scaffold_1_CACTA_0009 4859 4981" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25265369..25267963) /note="source:CACAO_M_S_E5046_F335_scaffold_1 18259 20864" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25269259..25269487 /note="source:CACAO_M_E29_F88_scaffold_1 2416 2643" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 25269905..25270473 /note="source:CACAO_M_E29_F88_scaffold_1 2708 3339" /mobile_element_type="retrotransposon:LTR/Copia" gene 25271579..25286916 /locus_tag="TCM_024415" /note="dbxref CacaoGD:Thecc1EG024415" mRNA join(25271579..25271754,25272129..25272286, 25279702..25280629,25281703..25281953,25282364..25282549, 25283492..25283912,25285909..25286049,25286616..25286916) /locus_tag="TCM_024415" /product="L-galactono-1,4-lactone dehydrogenase" /inference="alignment:exonerate- protein:2:ricco:29941.m000227" /inference="similar to AA sequence:ricco:29941.m000227" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04912t00001" mobile_element complement(25271633..25273009) /note="source:CACAO_M_S_E100312_F82_scaffold_9 5492 6476" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25274023..25274593) /note="source:CACAO_M_S_E100312_F82_scaffold_9 3909 4476" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25274619..25274725) /note="source:CACAO_M_E23727_F42_scaffold_4 2822 2918" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25275484..25278940 /note="source:CACAO_M_E43781_F323_scaffold_5 1 3457" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(25280006..25280629,25281703..25281953, 25282364..25282549,25283492..25283912,25285909..25286049, 25286616..25286774) /locus_tag="TCM_024415" /note="dbxref ricco:29941.m000227" /codon_start=1 /product="L-galactono-1,4-lactone dehydrogenase" /protein_id="EOY09063.1" /db_xref="TAIR:AT3G47930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SU56" /translation="MFRTLSLKRSFQTHLKTLIHCPQPPPPLPLPFSPIRTLSTASSS DSELRKYLGYTALLIFCGAATYYSFPFPDKAKHKKAQIFRYAPLPDDLHTVSNWSGTH EVQTRHFHQPENLQQLEQLVKESNDKRTKVRPVGSGLSPNGIGLARGGMVNLALMDKV VEVDKEKKRVRVQAGIRVQQLVDEIKEYGLTLQNFASIREQQIGGILQVGAHGTGAKL PPIDEQVISMKLVTPAKGTIELSKEEDPELFYLARCGLGGLGVVAEVTIQCVERQELV EHTSVSNMKDIKKNHKKMLSENKHVKYLYIPYTDTVVVVTCNPVSKWRGPPKFKPKYT KDEAMQHVRELYKESLKKYRAREITSTSPDSNEPDVNEFSFTELRDKLLALDPLNKDH VMKVNHAEAEFWRRSEGYRVEWSDEILGFDCGGQQWVSETCFPAGTLSKPSMKDLEYI EELKQLIEKEEIPAPAPIEQRWTACSQSPMSPASSSAEDDIFSWVGIIMYLPSMDARQ RKEITEEFFHYRHLTQAQLWDKYAAYEHWAKIEVPKDKEELEALQARLKNRFPVEAYN KARRELDPNRILSNNMLEKLFPLSDNV" gene complement(25287722..25288450) /locus_tag="TCM_024417" /note="dbxref CacaoGD:Thecc1EG024417" mRNA complement(join(25287722..25287905,25288198..25288282, 25288392..25288450)) /locus_tag="TCM_024417" /product="Uncharacterized protein" /note="quality class is strong-expertchoice, express is strong, homology is none, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13927t1" CDS complement(join(25287838..25287905,25288198..25288282, 25288392..25288418)) /locus_tag="TCM_024417" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09064.1" /translation="MHKRINPPQDILLRIFLLRRRASLGQRRKEIEASLRDAYSRFAA VGSVKLASKRCFQET" gene 25288607..25301793 /locus_tag="TCM_024419" /note="dbxref CacaoGD:Thecc1EG024419" mRNA join(25288607..25288754,25300031..25300552, 25300888..25301793) /locus_tag="TCM_024419" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03228t00001" CDS join(25288613..25288754,25300031..25300242) /locus_tag="TCM_024419" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09065.1" /translation="MEAEADFNQVISGTNRTRINEKESQPPHHIQKVTQKLHPKKKNH YFVRCIKEQKVVNNKRKKERQGKLRELWQKPHLRERRRREFSLCKALLERKREKRRKQ TFKGRLIFGENLTKL" mobile_element 25289783..25290049 /note="source:CACAO_M_E35271_F316_scaffold_5 5221 5479" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(25290045..25292802) /note="source:CACAO_M_E12105_F316_scaffold_3 3 5389" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 25292830..25294436 /note="source:CACAO_M_E43787_F42_scaffold_5 1 1607" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25294808..25295946 /note="source:CACAO_M_E43787_F42_scaffold_5 1608 2746" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25300678..25308510 /note="source:INTACT35_F17_scaffold_5-int 1 7833" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 25302373..25304792 /locus_tag="TCM_024420" /note="dbxref CacaoGD:Thecc1EG024420" mRNA join(25302373..25302819,25302988..25303229, 25303386..25303675,25304045..25304792) /locus_tag="TCM_024420" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene31767" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043704t1" /inference="similar to AA sequence:Phytozome:Glyma14g01400.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.20 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc6222t1" CDS join(25302404..25302819,25302988..25303229, 25303386..25303675,25304045..25304590) /locus_tag="TCM_024420" /note="paralog of Thecc1EG043704t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09066.1" /db_xref="Phytozome:Glyma14g01400.1" /translation="MKKVSTSSKTMADQQEEETKPLRDYAVRQLQNLHSSIRRPLIQA NIFEIKPSIIQMIQTVVQFGGLPNDDPNAHIVNFLEICDTFKANGVTDDAIRLRLFPF SLRDKAKSWSNSLLASSINTWDDLAKKFLAKFFPPAKTTIDAAVVGALMSKSIDKAYD LLEEIESNNYQWPSERLGTRKIAGMHELDVINTVSTQLTSFAKKIDKLSVNAVQNSFM TWSSSTAKSNFPLGFPSRAPMLEKKPSMEDIFMQFMTKTNAFIQNQATSIRNLEIQVG QLASALNIRPQGILPSDTEPNPRREGKEHCMAITLHNGKENKLPPMLKDPGSFSIPCT ISSFKISRALCDLGVRVSIIPLSIARKLGFQEIQPTTVTLQLADRTIRYLVEIIEDVL LKVGHLYILVDFIVLEIEDDVEIPLILRRPFLATAGAIIDVKNDKITFRVGEEEVLIN LFNVIQYLYTDGCYKVDSVNEGKGKPISRPSTTQAPTFETKPPPLSS" mobile_element 25314874..25315052 /note="source:scaffold_4_CACTA_0494 2564 2745" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25315042..25315079) /note="source:CACAO_M_E84908_F12_scaffold_10 2974 3010" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25316970..25318127) /note="source:CACAO_M_E43872_F85_scaffold_5 1541 2698" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25319356..25320455 /note="source:CACAO_M_E52783_F323_scaffold_8 2273 3354" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25320456..25320715 /note="source:INTACT551_F248_scaffold_7-int 7762 8020" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 25328053..25328204 /note="source:INTACT139F_F15_scaffold_2-int 7692 7815" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25329606..25330775) /note="source:CACAO_M_E45026_F15_scaffold_6 413 1582" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25333186..25334586 /note="source:CACAO_M_E59025_F323_scaffold_9 1800 3200" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25334588..25335199 /note="source:INTACT551_F248_scaffold_7-int 8017 8620" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(25335080..25335214) /note="source:INTACT646F_F95_scaffold_5-int 5710 5844" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25335226..25335436 /note="source:CACAO_M_E50311_F328_scaffold_7 4886 5094" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25335494..25338635) /note="source:CACAO_M_E589_F323_scaffold_1 324 3465" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25338736..25339024 /note="source:CACAO_M_E43781_F323_scaffold_5 3168 3457" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25342366..25343614) /note="source:scaffold_8_CACTA_0859 16698 17936" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25343611..25344531 /note="source:INTACT139F_F15_scaffold_2-int 7692 8611" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25346502..25347009 /note="source:CACAO_M_E23859_F15_scaffold_4 2776 3285" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25347764..25348553) /note="source:CACAO_M_E86338_F15_scaffold_15 6344 7133" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25349618..25351126 /note="source:CACAO_M_E22398_F15_scaffold_3 5584 7092" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25352580..25352822 /note="source:CACAO_M_E59650_F290_scaffold_9 5182 5425" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(25352822..25353029) /note="source:scaffold_8_CACTA_0859 16497 16704" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25352823..25352897 /note="source:CACAO_M_E5390_F15_scaffold_2 2416 2689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25354325..25355659 /note="source:CACAO_M_E50311_F328_scaffold_7 1 1337" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25355760..25356507) /note="source:INTACT774_F328_scaffold_5-int 1065 1812" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25356508..25357368 /note="source:CACAO_M_E43809_F323_scaffold_5 1 833" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25357972..25359960 /note="source:CACAO_M_E43809_F323_scaffold_5 834 2822" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25359961..25360371 /note="source:CACAO_M_E12878_F42_scaffold_3 2092 2505" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25360372..25361113) /note="source:CACAO_M_E36168_F141_scaffold_5 2343 3083" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(25361214..25363536) /note="source:CACAO_M_E57728_F42_scaffold_9 1 2335" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25363537..25366725) /note="source:INTACT774_F328_scaffold_5-int 4874 8065" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25371546..25374503 /note="source:CACAO_M_E84847_F143_scaffold_10 1 2961" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25374594..25375774) /note="source:CACAO_M_E5899_F5_scaffold_2 1 1204" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25384509..25387260) /note="source:INTACT599_F268_scaffold_9-int 8231 10979" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25392489..25392731 /note="source:scaffold_5_CACTA_0586 11515 11775" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25394535..25394665 /note="source:CACAO_M_E23991_F4_scaffold_4 16035 16152" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 25400320..25400369 /note="source:CACAO_M_E14079_F73_scaffold_3 2495 2544" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 25404133..25405392 /locus_tag="TCM_024427" /note="dbxref CacaoGD:Thecc1EG024427" mRNA 25404133..25405392 /locus_tag="TCM_024427" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.33 coverage" CDS 25404419..25404700 /locus_tag="TCM_024427" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09067.1" /translation="MIKLWNFLSFSFSFFVACFPLKDRQPHNIFHCKNESSTRKIGNN FHWKPYFATWIGNNYLPFIFSTIPWAVKLKTCPFCSLLARVWFLLLNIL" gene complement(25408798..25412027) /locus_tag="TCM_024428" /note="dbxref CacaoGD:Thecc1EG024428" mRNA complement(join(25408798..25410280,25411318..25412027)) /locus_tag="TCM_024428" /product="Ankyrin repeat family protein / BTB/POZ domain-containing protein" /inference="alignment:exonerate- protein:2:ricco:29941.m000229" /inference="similar to AA sequence:Phytozome:POPTR_0006s04190.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5344t2" CDS complement(join(25409309..25410280,25411318..25411791)) /locus_tag="TCM_024428" /codon_start=1 /product="Ankyrin repeat family protein / BTB/POZ domain-containing protein" /protein_id="EOY09068.1" /db_xref="Phytozome:POPTR_0006s04190.1" /db_xref="TAIR:AT2G41370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZVC2" /translation="MSSFEESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCIL AARSLFFRKFFCGPDPPSGLDPVGSRMNPASAAAAGSRPGVIPVNSVGYEVFLLLLQF LYSGQVSIVPQKHEPRPNCSERACWHTHCTSAVDLALETLAAARYFGVEQLALLTQKQ LASMVEKASIEDVMKVLIASRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIDVVAKI EELRLKSSLARRPLITHHHHHHDLTSTADLEDQKIRRMRRALDSSDVELVKLMVMGEG LNLDEALALHYAVENCSREVVKTLLELGAADVNYRAGPAGKTPLHIAAEMVSPDMVAV LLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAAL VISREEGSANAPTSTAIYPPMSDEHNSSSSGSNLATLNLDSRLVYLNLGATGSTQMGS RMEGDDDSSHNSQREAMNRHDPTMYHHSHDF" mobile_element complement(25417974..25418043) /note="source:CACAO_M_E53201_F9_scaffold_8 6927 7002" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25424421..25424520 /note="source:INTACT261_F189_scaffold_2-int 12419 12530" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(25424934..25425001) /note="source:INTACT1818F_F49_scaffold_11-int 20014 20073" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25429082..25429175 /note="source:CACAO_M_S_E16386_F9_scaffold_2 2048 2141" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25435185..25435197 /note="source:INTACT219_F174_scaffold_9-int 3628 3752" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(25435198..25435209) /note="source:scaffold_5_CACTA_0611 6019 6028" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25435210..25436107) /note="source:CACAO_M_E13371_F323_scaffold_3 2078 2974" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25436208..25437909 /note="source:CACAO_M_E52472_F323_scaffold_7 938 2639" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25438012..25438797) /note="source:CACAO_M_E52750_F323_scaffold_8 1 786" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25445135..25445202 /note="source:CACAO_M_E57478_F378_scaffold_9 1443 1511" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25445143..25445206) /note="source:CACAO_M_E42804_F230_scaffold_5 1735 1798" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25458381..25459915 /note="source:CACAO_M_S_E14747_F17_scaffold_2 1 1505" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25465115..25465854) /note="source:scaffold_2_CACTA_0262 7809 8557" /mobile_element_type="transposon:TIR/CACTA" gene 25466006..25473671 /locus_tag="TCM_024432" /note="dbxref CacaoGD:Thecc1EG024432" mRNA join(25466006..25466126,25472627..25473671) /locus_tag="TCM_024432" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.48 coverage" CDS 25473043..25473378 /locus_tag="TCM_024432" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09069.1" /translation="MRWAQHIFEWEWNEKIVWLSFLSPYLWVPIFLSRFMGVFFLRLI TSFCITNLCLQDSTSIASVGCVYMGEFPKRISYGLAKSIRTKPLSWFQPFIRCKEPPK KKKEGPTLN" mobile_element 25479983..25480032 /note="source:scaffold_2_CACTA_0262 3315 3364" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25480142..25480375 /note="source:scaffold_2_CACTA_0262 3365 3601" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25480429..25481901 /note="source:CACAO_M_S_E66200_F215_scaffold_5 1 1473" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25482450..25483186 /note="source:scaffold_2_CACTA_0262 3868 4604" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25483228..25483685 /note="source:scaffold_2_CACTA_0262 4787 5223" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25485102..25485564) /note="source:INTACT568_F81_scaffold_2-int 7605 8081" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25490092..25493519 /note="source:INTACT134F_F392_scaffold_2-int 1 3360" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25491210..25494720) /note="source:INTACT568_F81_scaffold_2-int 2738 7047" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25494724..25497870 /note="source:CACAO_M_E68730_F230_scaffold_9 1 3180" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25505235..25508123 /note="source:INTACT466_F223_scaffold_2-int 4 2925" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25508174..25512377 /note="source:INTACT466_F223_scaffold_2-int 5660 9981" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(25521212..25529896) /locus_tag="TCM_024437" /note="dbxref CacaoGD:Thecc1EG024437" mRNA complement(join(25521212..25521664,25522623..25522761, 25522890..25523136,25524522..25524905,25525972..25526261, 25527751..25528165,25528456..25528518,25529296..25529896)) /locus_tag="TCM_024437" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s04210.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017005t5" /inference="similar to AA sequence:Phytozome:POPTR_0006s04210.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01972t00001" CDS complement(join(25521491..25521664,25522623..25522761, 25522890..25523136,25524522..25524905,25525972..25526261, 25527751..25528165,25528456..25528518,25529296..25529473)) /locus_tag="TCM_024437" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG017005t5" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1" /protein_id="EOY09070.1" /db_xref="Phytozome:POPTR_0006s04210.1" /db_xref="TAIR:AT5G04060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZA4" /translation="MGGYALGLAFDSKSGQMIMVALLLMVGSFYVGNLFGNNAPIYIS HDSDTSSSSSSASSPGFDSTGTFEFQHLYGDAAVISAISIFINKVALTYRETPLVIPA NGINICPLKFNEYIPCHDISYVKQLLPSLNVSRREELERHCPPLEKRLFCLVPPPQDY KIPIKWPISRDYVWRSNVNHTHLAEVKGGQNWVHEKNQLWWFPGGGTHFKHGAAEYIQ RLGNMATDETGDLRSAGVTQVLDVGCGVASFSAYLLPLNIQTMSFAPKDGHQNQIQFA LERGIGAMISAIATKQLPYPSSSFEMVHCSRCRVDWHENGGILLKEVNRLLRPNGYFV YSAPPAYRKDKDYPVIWNKLVDLTTAMCWKLIARKVQTAIWIKEENPQCLHHNAKLKL IDFCDAVDETKSSWKMPLMNCIQLRSAQTDPRKLPPRPDRLSMYLESLSRIGISKEEF TIDTNFWQDQVRNYWKLMNISKMELRNVMDMNAFCGGFAVALNEFPVWVMNIVPSSMH NTLSAIYERGLIGAFHDWCEPFSTYPRTYDLLHANHLFSHYKNSGEGCQLEDIMLEMD RVLRPQGFVIIRDEDSIASRIQDLAPKFLWEVESHILENKEKQRESVLICRKKFWAIV EEVTA" mRNA complement(join(25521644..25521664,25522623..25523136, 25524522..25524905,25525972..25526261,25527751..25528165, 25529296..25529863)) /locus_tag="TCM_024437" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s04210.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017005t5" /inference="similar to AA sequence:Phytozome:POPTR_0006s04210.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc968t4; inference alignment:Newbler:10:TSA:cgbaL_g01972t00001" CDS complement(join(25522886..25523136,25524522..25524905, 25525972..25526261,25527751..25528165,25529296..25529473)) /locus_tag="TCM_024437" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG017005t5" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 2" /protein_id="EOY09071.1" /db_xref="Phytozome:POPTR_0006s04210.1" /db_xref="TAIR:AT5G04060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZA4" /translation="MGGYALGLAFDSKSGQMIMVALLLMVGSFYVGNLFGNNAPIYIS HDSDTSSSSSSASSPAISIFINKVALTYRETPLVIPANGINICPLKFNEYIPCHDISY VKQLLPSLNVSRREELERHCPPLEKRLFCLVPPPQDYKIPIKWPISRDYVWRSNVNHT HLAEVKGGQNWVHEKNQLWWFPGGGTHFKHGAAEYIQRLGNMATDETGDLRSAGVTQV LDVGCGVASFSAYLLPLNIQTMSFAPKDGHQNQIQFALERGIGAMISAIATKQLPYPS SSFEMVHCSRCRVDWHENGGILLKEVNRLLRPNGYFVYSAPPAYRKDKDYPVIWNKLV DLTTAMCWKLIARKVQTAIWIKEENPQCLHHNAKLKLIDFCDAVDETKSSWKMPLMNC IQLRSAQTDPRKLPPRPDRLSMYLESLSRIGISKEEFTIDTNFWQDQVRNYWKLMNIS KMELRNVMDMNAFCGGFAVALNEFPVWVMNIVPSSMHNTLSAIYERGLIGAFHDW" mobile_element complement(25532716..25533420) /note="source:INTACT280_F60_scaffold_5-int 7511 8214" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25534356..25534628) /note="source:CACAO_M_E9978_F12_scaffold_2 8884 9059" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25534427..25537270 /note="source:CACAO_M_E43826_F15_scaffold_5 1 2829" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25537271..25537303 /note="source:INTACT466_F223_scaffold_2-int 9951 9981" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 25539061..25540276 /locus_tag="TCM_024438" /note="dbxref CacaoGD:Thecc1EG024438" mRNA 25539061..25540276 /locus_tag="TCM_024438" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022845t1" /inference="similar to AA sequence:Phytozome:Glyma11g25770.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.12 coverage" CDS 25539330..25539821 /locus_tag="TCM_024438" /note="paralog of Thecc1EG022845t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09072.1" /db_xref="Phytozome:Glyma11g25770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C4D7" /translation="MGKGQSMMRLSLFTIENYPLWRMRFENFIQSIDLDIWDIILEGL HVPTKLVDSVRHVKKKAEWDDKDRKLVQLNHKTIKALFCALSESEFNRVTTSTLAKDI WDILKNCYDRTNQVKESKISFLTLDYELFKIKEEKPIKEMYEIFTKIIEGLKALGKEF PNA" mobile_element complement(25544690..25545337) /note="source:scaffold_2_CACTA_0256 17088 17838" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25545369..25545447) /note="source:scaffold_2_CACTA_0256 17181 17254" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25545474..25547376) /note="source:CACAO_M_S_E144426_F33_scaffold_10 19287 21187" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25547377..25550027) /note="source:CACAO_M_S_E98819_F83_scaffold_8 261 2921" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 25548703..25550471 /note="source:CACAO_M_E11415_F328_scaffold_2 12001 13787" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25550458..25551528 /note="source:scaffold_3_CACTA_0382 8552 9625" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25551508..25551852) /note="source:scaffold_2_CACTA_0256 17099 17498" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25552049..25552697) /note="source:INTACT201_F33_scaffold_5-int 2299 2947" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25552698..25558340) /note="source:CACAO_M_E58819_F24_scaffold_9 8462 14103" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25558480..25559837 /note="source:scaffold_2_CACTA_0256 11466 12804" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25559938..25562704 /note="source:INTACT359_F73_scaffold_2-int 1754 4501" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25562705..25563080) /note="source:CACAO_M_E13363_F273_scaffold_3 10834 11081" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25567132..25567566) /note="source:CACAO_M_E59600_F12_scaffold_9 6315 6749" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25574457..25575195) /note="source:CACAO_M_S_E64023_F13_scaffold_5 16487 17254" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25575196..25575231 /note="source:INTACT454F_F360_scaffold_4-int 3299 3334" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25628901..25630095) /note="source:CACAO_M_E59600_F12_scaffold_9 5458 6639" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25646097..25647823 /note="source:CACAO_M_E71568_F73_scaffold_10 1039 2735" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(25656962..25659812) /locus_tag="TCM_024442" /note="dbxref CacaoGD:Thecc1EG024442" mRNA complement(join(25656962..25657197,25657437..25657714, 25659702..25659812)) /locus_tag="TCM_024442" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s10135.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033176t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5371t2" CDS complement(join(25657167..25657197,25657437..25657714, 25659702..25659803)) /locus_tag="TCM_024442" /note="paralog of Thecc1EG033176t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09073.1" /translation="MKSFYVAMKSLHSPSKHRCIATAMKSSQRNKKLRRKKLKRLNAS MRRLKVETNEIRKEQEIIKRGQREVREKFEAIHYECEQLRTETDLIIKQSRNTRLRLG LMFQILRARESNDFNKAASLTQLLRELVAKQNNQ" mobile_element complement(25657783..25657851) /note="source:CACAO_hAT_E44_scaffold_1 1166 1234" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(25657842..25658556) /note="source:CACAO_hAT_E44_scaffold_1 2 702" /mobile_element_type="transposon:TIR/hAT" gene complement(25665393..25666509) /locus_tag="TCM_024443" /note="dbxref CacaoGD:Thecc1EG024443" mRNA complement(join(25665393..25665539,25665643..25665923, 25666306..25666509)) /locus_tag="TCM_024443" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s11940.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033176t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc4472t1" CDS complement(join(25665506..25665539,25665643..25665923, 25666306..25666395)) /locus_tag="TCM_024443" /note="paralog of Thecc1EG033176t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09074.1" /translation="MQSRRKTHDMRKLSLLLMSKRCTLSQRNHLTRRARENLGRRMKM LKVEMKEISKEQESIRKEQREVKEKFDMIEVECEQLRRETEFITQQSLNTQLRLCLMF QILKARETNDFTKAASLTQILREVIAKQSKEK" mobile_element complement(25667195..25668413) /note="source:scaffold_5_CACTA_0614 1448 2651" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25670117..25671518 /note="source:INTACT1313F_F380_scaffold_7-int 16088 17464" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25675645..25677232 /note="source:INTACT167_F5_scaffold_2-int 3832 5462" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25677973..25678614 /note="source:scaffold_9_CACTA_0931 1 646" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25678611..25678850 /note="source:INTACT167_F5_scaffold_2-int 5456 5691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25678934..25679009) /note="source:CACAO_M_E5899_F5_scaffold_2 1129 1203" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25679360..25681776 /note="source:CACAO_M_E34540_F17_scaffold_5 3 2429" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25681777..25683287 /note="source:CACAO_M_E85923_F17_scaffold_12 13026 14527" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25683288..25684226 /note="source:CACAO_M_E3326_F17_scaffold_1 2390 3262" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25684227..25687143 /note="source:CACAO_M_E43831_F302_scaffold_5 1 2917" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25687144..25687495 /note="source:CACAO_M_E34540_F17_scaffold_5 3368 3720" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25687496..25690588 /note="source:CACAO_M_E43833_F15_scaffold_5 1 3093" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25690445..25690610 /note="source:scaffold_9_CACTA_0931 12952 13118" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25690589..25694044 /note="source:CACAO_M_E3326_F17_scaffold_1 3606 7061" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25694488..25695594) /note="source:CACAO_M_E85923_F17_scaffold_12 3160 4260" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25695595..25697880 /note="source:CACAO_M_S_E101381_F51_scaffold_9 1 2269" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25697881..25701322 /note="source:CACAO_M_E43834_F323_scaffold_5 1 3442" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25701323..25702143 /note="source:CACAO_M_S_E19121_F51_scaffold_3 2282 3113" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25702144..25702595 /note="source:CACAO_M_E3326_F17_scaffold_1 8690 9150" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25702597..25704136 /note="source:CACAO_M_E34540_F17_scaffold_5 10318 11848" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25704134..25704451) /note="source:CACAO_M_E85923_F17_scaffold_12 2390 2704" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25704183..25707111 /note="source:CACAO_M_E3326_F17_scaffold_1 11848 14865" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25708970..25710074 /note="source:INTACT39F_F22_scaffold_1-int 18327 19405" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25716849..25717020) /note="source:INTACT458_F219_scaffold_7-int 18000 18165" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25717677..25718282) /note="source:scaffold_2_CACTA_0239 8742 9348" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25718997..25722317) /note="source:scaffold_2_CACTA_0239 4610 7933" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25723132..25724443 /note="source:INTACT1313F_F380_scaffold_7-int 1482 2771" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25723567..25736110) /note="source:INTACT58_F125_scaffold_5-int 3115 14738" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25735660..25736666 /note="source:INTACT666_F293_scaffold_9-int 14323 15415" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25736575..25736780) /note="source:INTACT1391F_F387_scaffold_8-int 14133 14328" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25736819..25737729 /note="source:INTACT444_F216_scaffold_4-int 530 1441" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25737591..25739333) /note="source:INTACT458_F219_scaffold_7-int 14976 16776" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25739324..25739371) /note="source:CACAO_M_E69946_F329_scaffold_9 4592 4639" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 25739367..25739839 /note="source:INTACT782_F329_scaffold_10-int 2288 2765" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(25739840..25742638) /note="source:CACAO_M_E10599_F78_scaffold_2 1 2841" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25742639..25745362) /note="source:CACAO_M_E69946_F329_scaffold_9 1 2721" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(25753610..25753679) /note="source:CACAO_M_E86361_F7_scaffold_15 7466 7541" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25754538..25754688 /note="source:scaffold_9_CACTA_0937 10809 10959" /mobile_element_type="transposon:TIR/CACTA" gene complement(25757867..25759815) /locus_tag="TCM_024455" /note="dbxref CacaoGD:Thecc1EG024455" mRNA complement(join(25757867..25758704,25758877..25759303, 25759460..25759815)) /locus_tag="TCM_024455" /product="Calcium-binding EF-hand family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033567001" /inference="similar to AA sequence:frave:gene21916" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc509t3" CDS complement(join(25758695..25758704,25758877..25759303, 25759460..25759565)) /locus_tag="TCM_024455" /note="dbxref frave:gene21916" /codon_start=1 /product="Calcium-binding EF-hand family protein, putative" /protein_id="EOY09075.1" /db_xref="TAIR:AT2G41410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P30188" /translation="MKLINRLSPKRFFRSNKKDRSIVSKFDPSSYSSGSELCQAFKII DKDNDGVITRSELEALLSKVARQPPSREEVSLMLSEVYGDGVGCISLDTLMTQVVVPA CDEPACEPELRETFDIFDTDHDGKITAEELMAFFKETIGDERCTLEDCRRMIASVDKN GDGFVCFEDFARMMELQSWV" mobile_element complement(25766112..25766421) /note="source:CACAO_M_S_E15173_F4_scaffold_2 14087 14401" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 25773704..25773806 /note="source:INTACT904F_F49_scaffold_6-int 13800 13897" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(25789114..25795505) /locus_tag="TCM_024457" /note="dbxref CacaoGD:Thecc1EG024457" mRNA complement(join(25789114..25789648,25789756..25790893, 25791138..25791281,25793049..25795505)) /locus_tag="TCM_024457" /product="Patatin-like phospholipase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s04240.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s04240.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc735t4; alternateUTRof:Thecc1EG024457t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc660t9" mRNA complement(join(25789520..25789543,25789756..25790893, 25791138..25791281,25793049..25795505)) /locus_tag="TCM_024457" /product="Patatin-like phospholipase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s04240.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s04240.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc660t9; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc660t9" CDS complement(join(25789907..25790893,25791138..25791281, 25793049..25794467)) /locus_tag="TCM_024457" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Patatin-like phospholipase family protein isoform 1" /protein_id="EOY09076.1" /db_xref="Phytozome:POPTR_0006s04240.1" /db_xref="TAIR:AT5G04040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZA6" /translation="MEISNEARVDSFLIGPSTIIGRTIAFRILFCKSLSHMRHQIFHV LLHFIYRCKDFLSPLVSWLHPRNPQGILAMVTIIAFLLKRYTNVKLRAEMAYRRKFWR NMMRTALTYEEWAHAAKMLDKETPKMNESDLYDEELVRNKLQELRHRRQDGSLRDIIF CMRADLIRNLGNMCNPELHKGRLHVPKLIKEYIDEVSTQLRMVCDSDSEELSLEEKLS FMHETRHAFGRTALLLSGGASLGAFHIGVVKTLVEHKLLPRIIAGSSVGSIMCSVVAT RSWPELQSFFEDSWSSFQFFDQLGGIFSVVRRVMRQGAVHEIRQLQWMLRQLTSNLTF QEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPHVVIWSAVTASCAFPVLFEAQELMA KDRSGEIVPYHPPFNLDPEEGSGISARRWRDGSLEVDLPMMQLKELFNVNHFIVSQAN PHIAPLLRLKEFVRAFGGDFAAKLAQLTELEVKHRCHQILELGFPLGGLAKLFAQDWE GDVTVVMPATLAQYSKIIQNPSHLELQKAANQGRRCTWEKLSAIKANCGIELALDECV AILNHMRRLKRSADRAAASSHGLASTVRFNASKRIPSWNCIARENSTGSLEEDLTDVN SSLHQGVGGCTGIPPSGRNLRAHRSTHDGSDSESESVDVNSWTRSGGPLMRTTSANLF IDFVQNLDVDAEVNKGLMAHPSSPGFQMGGRDLLSHSSRVTTPDRGSEYEFDQRDLGN RTPVNGSSIMVTEGDLLQPERILNGFVLNVVKKEDLTLPHRILGSENYSAGVAECVQL DCPEKEMDASSASEYGDDATSEVNCLNETVPIVNATDDFSVHDDDRGVVDG" CDS complement(join(25789907..25790893,25791138..25791281, 25793049..25794467)) /locus_tag="TCM_024457" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Patatin-like phospholipase family protein isoform 1" /protein_id="EOY09077.1" /db_xref="Phytozome:POPTR_0006s04240.1" /db_xref="TAIR:AT5G04040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZA6" /translation="MEISNEARVDSFLIGPSTIIGRTIAFRILFCKSLSHMRHQIFHV LLHFIYRCKDFLSPLVSWLHPRNPQGILAMVTIIAFLLKRYTNVKLRAEMAYRRKFWR NMMRTALTYEEWAHAAKMLDKETPKMNESDLYDEELVRNKLQELRHRRQDGSLRDIIF CMRADLIRNLGNMCNPELHKGRLHVPKLIKEYIDEVSTQLRMVCDSDSEELSLEEKLS FMHETRHAFGRTALLLSGGASLGAFHIGVVKTLVEHKLLPRIIAGSSVGSIMCSVVAT RSWPELQSFFEDSWSSFQFFDQLGGIFSVVRRVMRQGAVHEIRQLQWMLRQLTSNLTF QEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPHVVIWSAVTASCAFPVLFEAQELMA KDRSGEIVPYHPPFNLDPEEGSGISARRWRDGSLEVDLPMMQLKELFNVNHFIVSQAN PHIAPLLRLKEFVRAFGGDFAAKLAQLTELEVKHRCHQILELGFPLGGLAKLFAQDWE GDVTVVMPATLAQYSKIIQNPSHLELQKAANQGRRCTWEKLSAIKANCGIELALDECV AILNHMRRLKRSADRAAASSHGLASTVRFNASKRIPSWNCIARENSTGSLEEDLTDVN SSLHQGVGGCTGIPPSGRNLRAHRSTHDGSDSESESVDVNSWTRSGGPLMRTTSANLF IDFVQNLDVDAEVNKGLMAHPSSPGFQMGGRDLLSHSSRVTTPDRGSEYEFDQRDLGN RTPVNGSSIMVTEGDLLQPERILNGFVLNVVKKEDLTLPHRILGSENYSAGVAECVQL DCPEKEMDASSASEYGDDATSEVNCLNETVPIVNATDDFSVHDDDRGVVDG" mobile_element 25797609..25798257 /note="source:CACAO_M_S_E5285_F300_scaffold_1 17253 17943" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(25798153..25798280) /note="source:CACAO_M_S_E5285_F300_scaffold_1 17764 17892" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(25799601..25802394) /note="source:CACAO_M_E73030_F79_scaffold_10 1 2768" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25803374..25803423) /note="source:CACAO_M_S_E122138_F207_scaffold_10 7193 7242" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25804141..25804196 /note="source:CACAO_M_E42514_F40_scaffold_5 142 194" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(25805933..25808101) /note="source:CACAO_M_S_E122136_F76_scaffold_10 4328 6469" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25808603..25808680) /note="source:CACAO_M_S_E122136_F76_scaffold_10 724 805" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25809090..25809911) /note="source:CACAO_M_E49106_F85_scaffold_6 2509 3329" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25809865..25809922 /note="source:CACAO_M_E42167_F82_scaffold_5 619 676" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25811273..25813844) /note="source:CACAO_M_E5111_F85_scaffold_2 1 2561" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25813845..25814020) /note="source:CACAO_M_S_E122136_F76_scaffold_10 1 167" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 25817560..25823426 /locus_tag="TCM_024459" /note="dbxref CacaoGD:Thecc1EG024459" mRNA join(25817560..25818509,25818604..25822585, 25822948..25823426) /locus_tag="TCM_024459" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:28470.m000423" /inference="similar to AA sequence:ricco:28470.m000423" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.49 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc400t1" CDS join(25818177..25818509,25818604..25822512) /locus_tag="TCM_024459" /note="dbxref ricco:28470.m000423" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09078.1" /translation="MISTKVVDEADADNFMESETLSTTTESSFENQNGRNRGRAEPGK KMKKLRSIKLSRMPSTRKGRSSSSQLRTVLSGYAASSEQSTPIEMSDASPNHIDPTSS SDAKEENFQELQLTLTRRSSFKPVRAVTRKSSMKLRRPQLRKSSGGTDLKKKSQSIRP VSFESSNSSRRDVSFQDDQHPIIPSSEVDSAPHYLESTSSCDMKKEQLQASPSHSESS FDSSDQNKKISTNEKQKLAYPGNESNRVLRTCALGPMRRLTKMASLKSKRPSTKKCSE ISSISDPSIERATCSSTLKDSKFPDRVEIKPGGSESDGNAVLNVCRYSYCSLHGHNHG NKPPLKRLVSMRRRVAKTQKSLKPHRQSSGKAKHSGKKKKRLQTEKGVFNGDPGVAVQ QTTVDIQEIPSVTGKEGSNFVNLAGSVPGELLYPDSSNEENLHQNNNPIKVEFKERSV DCSGVGAEQHKENFDTPDTKTKIEEIGHPNCRDVSSEEFGDATQLDKLSLRPDKTIST CNQVVPVDEEAHRDVDEDKASSLNLEEYKGDLGKDVKKLETVSTGRSFELPNGLFSLA SVSGMMEEPTSASEEKNGDSELDHGILEAADSTAASTTDAACKTDKENQKNFTFWKLI YQHMVTGLDAEFETQKPLPGVNLKEQVENLHNACENKDSCQEISQTDQAMSIEDHEAR NRKIEFSQSDAIKLVQQAFDKILSEIPDHSSDDQLVASEITSDEDFLLTKQDEGKEAS ISISSASIEDCMVQDHEEKQLQTDNKVASEEVKVAQIEGKKSDKQMPNSWSNLKKIII LKRFVKSLEKVRNLKPRKSWNLPMNRDPEAEKIHLRHQNMKGRKNTEEWMLDHALRQV ISTMAPSQKRKVAMLVQAFETIIPLPENGNDMRSNAAASSPTTSVQAHIESLVHNGDS VQNENGSEILPGKSSYPQMSFKDDHNQVNESQMAHQEIQKASPEPKVTSLLCGCTEQS LCIAASQMSGTDMMKEDTGAVDDNDGKDVSISMDAQPKFVDLSLSELEEHRLSDKSLN NEDAVRISHEKFFPENEEVIQKISKDEISILDSEVSNGGSEFNVQKKDLESSDLINSA DQHPGKPESQTEVGEGAQPKYKFLSYPLAQFESNFAADVSKSERQKYMRLWYLIYKHM VSGSATEDGSQPLHNGADEEVQGDAASKFSIEKNADCQGSFAVGQDMMENYTTGSQNI ECHNHEIIKLVEEAIDEIPLPDIQDDTSDNQSVTGDAIPDQVLSEKKHGEEVHIISSS TGSAEEDSEEARNITTEVRSTLNSEEKTLKSKNVSSQKEATRETEEGNKSKKRVQRNW SNLKKLILLRRFVKALEKVREFNPRAPQYLPLDPAPESEKVLLRHQNMEDRRNAEEWM LDYALQKVVAKLTPERKRRVELLVEAFETVIPTIS" gene complement(25825807..25828678) /locus_tag="TCM_024460" /note="dbxref CacaoGD:Thecc1EG024460" mRNA complement(join(25825807..25826267,25826814..25828654)) /locus_tag="TCM_024460" /product="NAP57 isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT3G57150.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s04270.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01639t00002" mRNA complement(join(25826111..25826267,25826810..25828678)) /locus_tag="TCM_024460" /product="NAP57 isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT3G57150.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s04270.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01639t00002; inference alignment:Newbler:10:TSA:cgbaB_g01639t00002" CDS complement(join(25826171..25826267,25826814..25828561)) /locus_tag="TCM_024460" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="NAP57 isoform 1" /protein_id="EOY09079.1" /db_xref="Phytozome:POPTR_0006s04270.1" /db_xref="TAIR:AT3G57150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H5T5" /translation="MPEVELSRSEKKKHKKKALLDSETKESDQDFMIKPQSTTPSIDT SQWPILLKNYDRLNVRTGHYTPLPCGFSPLKRPLAEYIRYGVLNLDKPSNPSSHEVVA WIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSKVPD VAKVARALETLTGAVFQKPPLISAVKRQLRIRTIYESKLLEYDADRHLVVFWISCEAG TYVRTMCVHLGLILGVGGHMQELRRVRSGISGEKDNMVTMHDVMDAQWVYDNYRDESY LRRVIMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTK GEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPTASTKKKLIAEGK LDKHGKPNDSTPKEWLRNVVLPAGGDSMVASLAASAEPAVKDSDTAVVEKEITVVEKE KEKKKKGKGEEDGEGHKRKLDGSSDSAVPVVAKKAKVEEAEVEVEKKEKKKKKKDKED SDAETEQKTEKGKKKKNKDKVESSSPDTEKSEKKKKKKSKESEEVTAVVNGANDAGAD KSEKKKKKKKNKDAVEEKEMLNYEGTCVSLWEWPALLASYEYWGFEGL" CDS complement(25826810..25828561) /locus_tag="TCM_024460" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="NAP57 isoform 2" /protein_id="EOY09080.1" /db_xref="Phytozome:POPTR_0006s04270.1" /db_xref="TAIR:AT3G57150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H5T5" /translation="MPEVELSRSEKKKHKKKALLDSETKESDQDFMIKPQSTTPSIDT SQWPILLKNYDRLNVRTGHYTPLPCGFSPLKRPLAEYIRYGVLNLDKPSNPSSHEVVA WIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSKVPD VAKVARALETLTGAVFQKPPLISAVKRQLRIRTIYESKLLEYDADRHLVVFWISCEAG TYVRTMCVHLGLILGVGGHMQELRRVRSGISGEKDNMVTMHDVMDAQWVYDNYRDESY LRRVIMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTK GEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPTASTKKKLIAEGK LDKHGKPNDSTPKEWLRNVVLPAGGDSMVASLAASAEPAVKDSDTAVVEKEITVVEKE KEKKKKGKGEEDGEGHKRKLDGSSDSAVPVVAKKAKVEEAEVEVEKKEKKKKKKDKED SDAETEQKTEKGKKKKNKDKVESSSPDTEKSEKKKKKKSKESEEVTAVVNGANDAGAD KSEKKKKKKKNKDAVEE" gene complement(25829789..25834400) /locus_tag="TCM_024461" /note="dbxref CacaoGD:Thecc1EG024461" mRNA complement(join(25829789..25830959,25831044..25831146, 25831226..25831272,25832476..25832522,25834171..25834224, 25834292..25834400)) /locus_tag="TCM_024461" /product="Ubiquitin carboxyl-terminal hydrolase isozyme L5 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g36170.1" /inference="similar to AA sequence:Phytozome:Glyma20g36170.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaL_g12195t00001" mRNA complement(join(25829879..25830959,25831044..25831149, 25831226..25831272,25832476..25832522,25834171..25834302)) /locus_tag="TCM_024461" /product="Ubiquitin carboxyl-terminal hydrolase isozyme L5 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g36170.1" /inference="similar to AA sequence:Phytozome:Glyma20g36170.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5911t1; inference alignment:Newbler:10:TSA:cgbaL_g12195t00001" mRNA complement(join(25829879..25830959,25831044..25831146, 25831226..25831272,25832473..25832522,25834171..25834302)) /locus_tag="TCM_024461" /product="Ubiquitin carboxyl-terminal hydrolase isozyme L5 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g36170.1" /inference="similar to AA sequence:Phytozome:Glyma20g36170.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5911t3; inference alignment:Newbler:10:TSA:cgbaL_g12195t00001" mRNA complement(join(25829879..25830959,25831049..25831146, 25831226..25831272,25832476..25832519)) /locus_tag="TCM_024461" /product="Ubiquitin carboxyl-terminal hydrolase isozyme L5 isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g36170.1" /inference="similar to AA sequence:Phytozome:Glyma20g36170.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc362t8; inference alignment:Newbler:10:TSA:cgbaL_g12195t00001" mRNA complement(join(25829954..25830959,25831044..25831146, 25831226..25831272,25832476..25832522,25834171..25834224, 25834303..25834388)) /locus_tag="TCM_024461" /product="Ubiquitin carboxyl-terminal hydrolase isozyme L5 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g36170.1" /inference="similar to AA sequence:Phytozome:Glyma20g36170.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08421t00001; alternateUTRof:Thecc1EG024461t1; inference alignment:Newbler:10:TSA:cgbaL_g12195t00001" CDS complement(join(25830183..25830959,25831044..25831146, 25831226..25831272,25832476..25832522,25834171..25834201)) /locus_tag="TCM_024461" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Ubiquitin carboxyl-terminal hydrolase isozyme L5 isoform 1" /protein_id="EOY09081.1" /db_xref="Phytozome:Glyma20g36170.1" /db_xref="TAIR:AT1G65650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FFF2" /translation="MSWCTIESDPGVFTELIQQMQVKGVQVEELYSLDLDAVNNLRPV YGLIFLFKWRPGEKDERLVIKDPNPNLFFASQVINNACATQAILSILMNCPDIDIGPE LSKLKEFTKNFPPELKGLAINNSEAIRTAHNSFARPEPFVPEEQKAAGKDDDVYHFIS YIPVDGVLYELDGLKEGPISLGQCPTGQGDMEWMKMVQPVIQERIERYSKSEIRFNLM AVIKNRKEMYTAELKELQKKRERILQQLATIQSDRLADRSSFEALNKQLSEVNSGIEG ATEKILMEEEKFKKWRTENIRRKHNYIPFLFNFLKILAEKKQLKPLIEKAKQKTSSSR " CDS complement(join(25830183..25830959,25831044..25831146, 25831226..25831272,25832476..25832522,25834171..25834201)) /locus_tag="TCM_024461" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Ubiquitin carboxyl-terminal hydrolase isozyme L5 isoform 1" /protein_id="EOY09082.1" /db_xref="Phytozome:Glyma20g36170.1" /db_xref="TAIR:AT1G65650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FFF2" /translation="MSWCTIESDPGVFTELIQQMQVKGVQVEELYSLDLDAVNNLRPV YGLIFLFKWRPGEKDERLVIKDPNPNLFFASQVINNACATQAILSILMNCPDIDIGPE LSKLKEFTKNFPPELKGLAINNSEAIRTAHNSFARPEPFVPEEQKAAGKDDDVYHFIS YIPVDGVLYELDGLKEGPISLGQCPTGQGDMEWMKMVQPVIQERIERYSKSEIRFNLM AVIKNRKEMYTAELKELQKKRERILQQLATIQSDRLADRSSFEALNKQLSEVNSGIEG ATEKILMEEEKFKKWRTENIRRKHNYIPFLFNFLKILAEKKQLKPLIEKAKQKTSSSR " CDS complement(join(25830183..25830959,25831044..25831149, 25831226..25831272,25832476..25832522,25834171..25834201)) /locus_tag="TCM_024461" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Ubiquitin carboxyl-terminal hydrolase isozyme L5 isoform 3" /protein_id="EOY09083.1" /db_xref="Phytozome:Glyma20g36170.1" /db_xref="TAIR:AT1G65650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FFF2" /translation="MSWCTIESDPGVFTELIQQMQVKGVQVEELYSLDLDAVNNLSRP VYGLIFLFKWRPGEKDERLVIKDPNPNLFFASQVINNACATQAILSILMNCPDIDIGP ELSKLKEFTKNFPPELKGLAINNSEAIRTAHNSFARPEPFVPEEQKAAGKDDDVYHFI SYIPVDGVLYELDGLKEGPISLGQCPTGQGDMEWMKMVQPVIQERIERYSKSEIRFNL MAVIKNRKEMYTAELKELQKKRERILQQLATIQSDRLADRSSFEALNKQLSEVNSGIE GATEKILMEEEKFKKWRTENIRRKHNYIPFLFNFLKILAEKKQLKPLIEKAKQKTSSS R" CDS complement(join(25830183..25830959,25831044..25831146, 25831226..25831272,25832473..25832522,25834171..25834201)) /locus_tag="TCM_024461" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Ubiquitin carboxyl-terminal hydrolase isozyme L5 isoform 4" /protein_id="EOY09084.1" /db_xref="Phytozome:Glyma20g36170.1" /db_xref="TAIR:AT1G65650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FFF2" /translation="MSWCTIESDPGVFTELIQQMQVKGVQVVEELYSLDLDAVNNLRP VYGLIFLFKWRPGEKDERLVIKDPNPNLFFASQVINNACATQAILSILMNCPDIDIGP ELSKLKEFTKNFPPELKGLAINNSEAIRTAHNSFARPEPFVPEEQKAAGKDDDVYHFI SYIPVDGVLYELDGLKEGPISLGQCPTGQGDMEWMKMVQPVIQERIERYSKSEIRFNL MAVIKNRKEMYTAELKELQKKRERILQQLATIQSDRLADRSSFEALNKQLSEVNSGIE GATEKILMEEEKFKKWRTENIRRKHNYIPFLFNFLKILAEKKQLKPLIEKAKQKTSSS R" CDS complement(25830183..25830914) /locus_tag="TCM_024461" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Ubiquitin carboxyl-terminal hydrolase isozyme L5 isoform 5" /protein_id="EOY09085.1" /db_xref="Phytozome:Glyma20g36170.1" /db_xref="TAIR:AT1G65650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SHY9" /translation="MNCPDIDIGPELSKLKEFTKNFPPELKGLAINNSEAIRTAHNSF ARPEPFVPEEQKAAGKDDDVYHFISYIPVDGVLYELDGLKEGPISLGQCPTGQGDMEW MKMVQPVIQERIERYSKSEIRFNLMAVIKNRKEMYTAELKELQKKRERILQQLATIQS DRLADRSSFEALNKQLSEVNSGIEGATEKILMEEEKFKKWRTENIRRKHNYIPFLFNF LKILAEKKQLKPLIEKAKQKTSSSR" mobile_element 25836216..25839322 /note="source:CACAO_M_S_E66227_F42_scaffold_5 1 3107" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 25839687..25842561 /locus_tag="TCM_024464" /note="dbxref CacaoGD:Thecc1EG024464" mRNA join(25839687..25840058,25842095..25842561) /locus_tag="TCM_024464" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(25839858..25840058,25842095..25842385) /locus_tag="TCM_024464" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09086.1" /translation="MPFLRARQIAKLVQNKLAMTIPLFKARRANLRVVKEVQKSYVEE FRSLRKYADELLRTNEGTTIKIKGQTNTQKTHNRKKKSFVTICAPSEVSTTAPSQHVV GPPSEGVVATPSQFAANAPSQFTISGAAIEFAVGASQGVVRLSVSITTTTKKIKVKAS RGT" mobile_element complement(25847314..25847359) /note="source:scaffold_5_CACTA_0610 5703 5749" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25848381..25849191) /note="source:CACAO_M_E5627_F4_scaffold_2 416 1227" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 25849192..25850692 /note="source:INTACT591_F264_scaffold_1-int 19743 21267" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25850703..25851122) /note="source:CACAO_M_E5627_F4_scaffold_2 1 420" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 25851431..25862058 /note="source:INTACT774_F328_scaffold_5-int 1 10628" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25865610..25865870 /note="source:CACAO_M_S_E66657_F76_scaffold_5 35 311" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25866325..25866448 /note="source:CACAO_M_S_E4911_F76_scaffold_1 1016 1147" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25867199..25869074) /note="source:CACAO_M_S_E88091_F86_scaffold_7 1043 2918" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25869175..25873163 /note="source:CACAO_M_E42630_F86_scaffold_5 1919 5890" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25873517..25874464) /note="source:CACAO_M_S_E88091_F86_scaffold_7 2226 3169" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25874565..25875969) /note="source:CACAO_M_E50663_F86_scaffold_7 831 2233" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25875970..25876264) /note="source:CACAO_M_E14658_F15_scaffold_3 2810 3104" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25876516..25877798) /note="source:INTACT132_F12_scaffold_9-int 10179 11461" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25878145..25880192) /note="source:CACAO_M_S_E4911_F76_scaffold_1 9496 11542" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25887389..25888094) /note="source:CACAO_M_S_E88091_F86_scaffold_7 115 825" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25888095..25888625 /note="source:INTACT51F_F15_scaffold_1-int 1 531" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25889038..25892162 /note="source:INTACT51F_F15_scaffold_1-int 949 4072" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25894346..25894534 /note="source:CACAO_M_S_E4911_F76_scaffold_1 2602 2807" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25894535..25897244 /note="source:CACAO_M_E43850_F73_scaffold_5 1 2710" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25897129..25897261) /note="source:INTACT19F_F94_scaffold_1-int 3820 3955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25897245..25897351 /note="source:CACAO_M_S_E66657_F76_scaffold_5 5747 5853" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25897498..25900286) /note="source:CACAO_M_E50738_F87_scaffold_7 11 2799" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25900983..25902370) /note="source:CACAO_M_S_E66461_F76_scaffold_5 325 1748" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25902372..25905355 /note="source:CACAO_M_S_E66239_F143_scaffold_5 1 2984" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25905356..25905528) /note="source:CACAO_M_E59164_F88_scaffold_9 183 339" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(25905533..25905760) /note="source:CACAO_M_S_E66461_F76_scaffold_5 13950 14178" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25905969..25906117) /note="source:CACAO_M_S_E66461_F76_scaffold_5 13893 14070" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25906103..25906331) /note="source:CACAO_M_E59164_F88_scaffold_9 7837 8127" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(25906615..25906730) /note="source:CACAO_M_S_E66461_F76_scaffold_5 13059 13189" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25907045..25907243) /note="source:CACAO_M_E34971_F328_scaffold_5 2797 2987" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25907344..25910111 /note="source:CACAO_M_E11415_F328_scaffold_2 420 3192" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25910266..25910788) /note="source:CACAO_M_S_E66461_F76_scaffold_5 11561 12089" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25910826..25910872) /note="source:CACAO_M_E59164_F88_scaffold_9 3459 3505" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(25911288..25911807) /note="source:CACAO_M_S_E66461_F76_scaffold_5 812 1331" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25911823..25912395) /note="source:CACAO_M_E59164_F88_scaffold_9 31 720" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(25914998..25916564) /locus_tag="TCM_024468" /note="dbxref CacaoGD:Thecc1EG024468" mRNA complement(join(25914998..25915714,25916099..25916564)) /locus_tag="TCM_024468" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS complement(25915355..25915702) /locus_tag="TCM_024468" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09087.1" /translation="MFLRNRGVLPENGDCLCVWCKDREDQGNHVLLLCNFAWIVWCKI FQRWDIQWVIPNSIEHLFRYLIWWTVFMAKSWNKGGWLFVVRCYGFYWLTRNDSIFND KVLDGDDFGVSSK" mobile_element 25918509..25918959 /note="source:INTACT19F_F94_scaffold_1-int 1853 2304" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25921080..25921579 /note="source:INTACT19F_F94_scaffold_1-int 2530 3029" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25924293..25927864 /note="source:CACAO_Mutator_E592_scaffold_3 4044 7638" /mobile_element_type="transposon:TIR/Mutator" mobile_element 25925326..25929747 /note="source:scaffold_8_CACTA_0867 1741 6248" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25929748..25932590) /note="source:INTACT61_F128_scaffold_2-int 6512 9273" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25932693..25935608) /note="source:INTACT61_F128_scaffold_2-int 3247 6247" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 25940617..25941877 /locus_tag="TCM_024470" /note="dbxref CacaoGD:Thecc1EG024470" mRNA join(25940617..25941175,25941839..25941877) /locus_tag="TCM_024470" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.41 coverage" CDS 25940692..25941009 /locus_tag="TCM_024470" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09088.1" /translation="MAGLQYNFFPTDFYYPRPQSVPADAGRVAAVTIQTQKKEVGDDL EWPRSLGFRVQQGNKIQGSKAGVSMRIQDQNEGTAYIQDQGKLVTNLPKQHSWFILIP EEL" gene complement(25941879..25956002) /locus_tag="TCM_024471" /note="dbxref CacaoGD:Thecc1EG024471" mRNA complement(join(25941879..25941982,25952096..25952338, 25952962..25953183,25953880..25954356,25955891..25956002)) /locus_tag="TCM_024471" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" gene complement(25941897..25946039) /locus_tag="TCM_024472" /note="dbxref CacaoGD:Thecc1EG024472" mRNA complement(join(25941897..25942358,25942437..25942553, 25942867..25943537,25945915..25946039)) /locus_tag="TCM_024472" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(join(25942203..25942358,25942437..25942553, 25942867..25943211)) /locus_tag="TCM_024472" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09090.1" /translation="MILSTNATNKELWKNVWAGLAPLKVEVFTWRVIRGRVPIKEELV KRNLLERDMALWPLCNKDIESVNHLFFTCPETWRSWSVWMAIWNVQGYMPNNATTFFM AWNYTYVEPSKKKIGLRGVLRDDAGVVKMTFSKLAGCGGANSTEILAINEAMISKPSE APWRFWHIVSQIKSMSSKLLGWDIKHIPRSGNDMANSLAKDGVGR" mobile_element 25944804..25946415 /note="source:CACAO_M_S_E5618_F73_scaffold_2 1 1610" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25946516..25951987 /note="source:INTACT706_F73_scaffold_9-int 1647 7088" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(25952145..25952338,25952962..25953183, 25953880..25954141)) /locus_tag="TCM_024471" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09089.1" /translation="MKEPVVVVLEESTTGTSLENYVEEVHHEEDSMEEGHNMVQPSRV STSEMIKVRKSISEGLGDTIKLAIGKIGSIETVQVTHQVQVGNGNIYAPTDAREKVEM FVELMGKVRESDLPWLLGSDFNSVLKMEKRLGATADDRDIEFFQQVVNELGLIDLPLK GDSPSIKEAAAIHFESLYGQRRVLELQNWDIDFHKVPEHLANGLEIMFIEDEVKEAIF SCDGNKA" mobile_element 25956766..25957009 /note="source:scaffold_5_CACTA_0610 5082 5298" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(25957048..25957248) /note="source:scaffold_5_CACTA_0610 5141 5340" /mobile_element_type="transposon:TIR/CACTA" gene complement(25959006..25961509) /locus_tag="TCM_024473" /note="dbxref CacaoGD:Thecc1EG024473" mRNA complement(join(25959006..25959850,25959937..25960062, 25960183..25960300,25960427..25961509)) /locus_tag="TCM_024473" /product="Uncharacterized protein isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037355t1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5463t1" mRNA complement(join(25959432..25959822,25959932..25960062, 25960183..25960300,25960427..25961499)) /locus_tag="TCM_024473" /product="Uncharacterized protein isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037355t1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5463t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5463t1" CDS complement(join(25959670..25959850,25959937..25960062, 25960183..25960300,25960427..25961396)) /locus_tag="TCM_024473" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG037355t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY09091.1" /translation="MADPNANVPNHDPFYAPLADNTLTFMNNMEPLLRDGDTTTTYLN TQRRAMNNIMGNRNHPFMDDTRNSFLNNMNPSLSGNSSLNNSNMWHLPVNSQSNPSNN NLGTSSQIQPNFEKEDLNNPHVPTRVDSPIQELSQHLFFRQSREKRKQPIDVIRSKES GQTFTRRKKNSNAGCSGSGTSKNHGEMNNQGETNLVNENVNSQSILRQQDLLPVQEPV LHPTSIPPLSEQEATEPLQTATNWEGTGNESNLENSQAGMHNESNLENSQTASFSFHR ETSSQVETSLRTERFDNNKGKLSGRPRGPPPSDCSGCEMLREIIHRKGPLVKKLQLHG ELLRGRYFHALINVFDEDTTVVSDVENINFYDKGYKDVEKFLSQYFIKQEQEGWSMHD DPRAVFFKVLCFGLVEFFEFLQTGEAANPVSPIARVLATVLAQAARIEILRPLFVLPS LHPLCFVAACLITY" CDS complement(join(25959815..25959822,25959932..25960062, 25960183..25960300,25960427..25961396)) /locus_tag="TCM_024473" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG037355t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY09092.1" /translation="MADPNANVPNHDPFYAPLADNTLTFMNNMEPLLRDGDTTTTYLN TQRRAMNNIMGNRNHPFMDDTRNSFLNNMNPSLSGNSSLNNSNMWHLPVNSQSNPSNN NLGTSSQIQPNFEKEDLNNPHVPTRVDSPIQELSQHLFFRQSREKRKQPIDVIRSKES GQTFTRRKKNSNAGCSGSGTSKNHGEMNNQGETNLVNENVNSQSILRQQDLLPVQEPV LHPTSIPPLSEQEATEPLQTATNWEGTGNESNLENSQAGMHNESNLENSQTASFSFHR ETSSQVETSLRTERFDNNKGKLSGRPRGPPPSDCSGCEMLREIIHRKGPLVKKLQLHG ELLRGRYFHALINVFDEDTTVVSDVENINFYDKGYKDVEKFLSQYFIKQEQEGWSMHD DPRAVFFKVLCFGSDG" gene 25961635..25971640 /locus_tag="TCM_024474" /note="dbxref CacaoGD:Thecc1EG024474" mRNA join(25961635..25961948,25962090..25962231, 25962691..25962754,25962856..25962915,25963404..25963497, 25963786..25963860,25964290..25964475,25971140..25971640) /locus_tag="TCM_024474" /product="Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037360t1" /inference="similar to AA sequence:frave:gene15409" /note="quality class is medium, express is weak, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.18 coverage" CDS join(25961816..25961948,25962090..25962231, 25962691..25962754,25962856..25962915,25963404..25963497, 25963786..25963860,25964290..25964475,25971140..25971312) /locus_tag="TCM_024474" /note="dbxref frave:gene15409; paralog of Thecc1EG037360t1" /codon_start=1 /product="Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein, putative" /protein_id="EOY09093.1" /db_xref="TAIR:AT5G12040.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RUF8" /translation="MLPSATLIKTLFSKNILHSNYSQKHQKSVRSTVPKAPNQDQLNI VICFGWLLKFKIGLFQLLVTPDKERNIEHVRKAIEEAVQKGAQLVPCLKYGTAHIRMT ASQFMLKILTQLYNTCCVFGTDGKLKAKHRKIHLFDIDIPGEITFMESKTRNARETPT ILDTNVGRIGVGICSDIHFQELAMIYAARGAHLLCYPGAFNMTTGPLNWELLWRARCQ LFPCFNLLVNSLNFTFGLICLYMNVDMNLDSNSDPTVGSGTPWPDPTIGKRQSRAVVA RFSHTVRQIGVLLHQSPFRRSAHEEEKRKKRK" mobile_element complement(25968202..25969967) /note="source:scaffold_2_CACTA_0276 6400 8182" /mobile_element_type="transposon:TIR/CACTA" mobile_element 25971336..25971835 /note="source:INTACT135F_F90_scaffold_2-int 13504 14004" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(25972077..25977534) /note="source:INTACT178_F162_scaffold_5-int 1 5462" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 25978176..25978188 /note="source:CACAO_M_S_E5285_F300_scaffold_1 13570 13582" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(25978189..25981753) /note="source:INTACT774_F328_scaffold_5-int 6957 10628" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25981288..25984264 /note="source:CACAO_M_E45364_F328_scaffold_6 3357 6301" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(25981746..25988258) /note="source:INTACT774_F328_scaffold_5-int 1 6697" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 25985599..25998012 /locus_tag="TCM_024477" /note="dbxref CacaoGD:Thecc1EG024477" mRNA join(25985599..25985746,25989778..25991143, 25997979..25998012) /locus_tag="TCM_024477" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.45 coverage" CDS 25990040..25990369 /locus_tag="TCM_024477" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09094.1" /translation="MCNTSQKEKTHQPRNYQTNSKSKAHTVLPHTFYKWLESQAKPKL IAASFPFYKYTSKPHNSPVRKNKQPKFVIQVFPWLVFSITFFLQISSTLVRYSLRHLP MLLLQQL" mobile_element complement(25995983..25996417) /note="source:CACAO_M_E43916_F9_scaffold_5 5520 5954" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25996418..25999532 /note="source:CACAO_M_E43866_F42_scaffold_5 1 3115" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 25999533..26002063 /note="source:CACAO_M_E34206_F273_scaffold_4 418 2953" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26003173..26004695 /note="source:CACAO_on_SS_E90_scaffold_6 6958 8495" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(26004779..26006280) /note="source:CACAO_on_SS_E90_scaffold_6 6958 8508" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(26009226..26010343) /note="source:CACAO_Again_on_E84_scaffold_3 2290 3620" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(26010344..26010659) /note="source:CACAO_M_E70891_F369_scaffold_10 8096 8402" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26010509..26012154 /note="source:CACAO_M_S_E89656_F313_scaffold_8 912 2600" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26010660..26010746) /note="source:CACAO_Again_on_E84_scaffold_3 2185 2289" /mobile_element_type="transposon:TIR/hAT" mobile_element 26012145..26012187 /note="source:INTACT598_F89_scaffold_2-int 12355 12394" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(26013795..26015232) /locus_tag="TCM_024480" /note="dbxref CacaoGD:Thecc1EG024480" mRNA complement(join(26013795..26014178,26014288..26014321, 26014414..26014473,26014896..26015232)) /locus_tag="TCM_024480" /product="Gibberellin-regulated family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033563001.2" /inference="similar to AA sequence:Phytozome:Glyma03g28740.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1867t4_C2" CDS complement(join(26013997..26014178,26014288..26014321, 26014414..26014473,26014896..26014964)) /locus_tag="TCM_024480" /codon_start=1 /product="Gibberellin-regulated family protein" /protein_id="EOY09095.1" /db_xref="Phytozome:Glyma03g28740.1" /db_xref="TAIR:AT1G74670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6T1W2" /translation="MTGKLTIVMYFLVIMLLLLAQNNASSIKEAPAPQPQPPSNFTRH GITQGSLHPQECGPRCTFRCSKTQYRKPCLFFCQKCCAKCLCVPPGTYGNKQFCPCYN NWKTKRGGPKCP" mobile_element complement(26017126..26017418) /note="source:CACAO_on_E33_A_scaffold_3 862 1143" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 26017720..26019408 /locus_tag="TCM_024482" /note="dbxref CacaoGD:Thecc1EG024482" mRNA join(26017720..26018198,26018909..26019408) /locus_tag="TCM_024482" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS join(26018024..26018198,26018909..26018994) /locus_tag="TCM_024482" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09096.1" /translation="MEGDNNIDVDCKKHRLVFPTISNYGKCRSGAPATKSSHKERQIE ASLHQPHYTDHISDVSPPLLSLDEELAKDDDEAKDDDDDEDE" mobile_element 26020006..26020237 /note="source:CACAO_Mariner_E176_scaffold_6 8632 8860" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 26020256..26020695 /note="source:CACAO_Mariner_E176_scaffold_6 1838 2275" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 26022419..26022614 /note="source:CACAO_on_E33_A_scaffold_3 2915 3100" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 26022783..26022852 /note="source:CACAO_on_E33_A_scaffold_3 11625 11692" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 26023020..26023191 /note="source:CACAO_on_E33_A_scaffold_3 7403 7597" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 26026051..26027703 /note="source:CACAO_M_E59205_F86_scaffold_9 1 1653" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26027804..26028163 /note="source:CACAO_M_E22866_F86_scaffold_3 1680 2039" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26028264..26029087) /note="source:CACAO_M_E49548_F86_scaffold_7 1 824" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26030568..26037807 /note="source:scaffold_5_CACTA_0603 1 7240" /mobile_element_type="transposon:TIR/CACTA" mobile_element 26038379..26039009 /note="source:scaffold_5_CACTA_0601 8100 8728" /mobile_element_type="transposon:TIR/CACTA" gene 26045632..26047500 /locus_tag="TCM_024484" /note="dbxref CacaoGD:Thecc1EG024484" mRNA join(26045632..26045694,26046617..26047002, 26047128..26047500) /locus_tag="TCM_024484" /product="Dehydration-induced protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400052009" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019501t1" /inference="similar to AA sequence:frave:gene21941" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g07981t00001" gene complement(26046486..26053144) /locus_tag="TCM_024485" /note="dbxref CacaoGD:Thecc1EG024485" mRNA complement(join(26046486..26048235,26049079..26049246, 26049996..26051682)) /locus_tag="TCM_024485" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT3G57180.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004443t1" /inference="similar to AA sequence:ricco:28470.m000432" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:PASA:2:TSA:puevd3b023677t1a2; inference alignment:Newbler:10:TSA:cgbaB_g00672t00002" CDS join(26046654..26047002,26047128..26047279) /locus_tag="TCM_024484" /note="dbxref frave:gene21941; paralog of Thecc1EG019501t1" /codon_start=1 /product="Dehydration-induced protein, putative" /protein_id="EOY09097.1" /db_xref="TAIR:AT2G41430.5" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HLN2" /translation="MALVAGGRSTLNPNAPLFIPAVYRQVEDFSPEWWQLVTTSTWYR DYWLSQHQDEDGFYDNAEDDGFDGNDIADLLPDTFDLVADEDLSGMDLQFEEFIQSYE NEMESASPPLPSNGGLEKDTETLMKNLSLLQSSPRSSSVPAKYAEKPAKTVNPKYSPR CIQQPR" mRNA complement(join(26047500..26048235,26049079..26049246, 26049996..26051353,26051466..26051617,26052276..26053144)) /locus_tag="TCM_024485" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT3G57180.1" /inference="similar to AA sequence:ricco:28470.m000432" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00672t00002" CDS complement(join(26047882..26048235,26049079..26049246, 26049996..26051353,26051466..26051617,26052276..26052730)) /locus_tag="TCM_024485" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28470.m000432" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /protein_id="EOY09098.1" /db_xref="TAIR:AT3G57180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HLN1" /translation="MLTYLQSARLKIPTLNFSTLNHPSVSLSPFPPKPTFTSATIPLP TSLEQHPGDGSSSENHHCTASAVQLIFPSQSIIVNTASHPLHTTFHFIVVSSKAFTPG KRRSSFTPISNLNTWFPWTTLLIILLAGSAMVITGADLVVGVDNSMAKTSFDLHQSLK SWYVEKMAFLLSATIVKLSPKLFHNTRGNTQENPEATICFFPGLGDKNNKQNKVSTIS LAVKNQSSNQTTEKIHGKVSPRRGNNPVSSEGRDGDQNYGPICPGCGIFMQDKDPNLP GYYQERKVFGRKVAANEDEDDLLEYFGDELEGLDDDVEEEEEEEEEDFVDDIEGNDAK EDNLGEGDEFDWDSDEWEAKFIKGGDDLEFDGFAPATVGYGNITEENMEKGKRKRLSK AVRKRMAREAKDEEEVTVCARCHSLRHHGQVKNQSTENLIPDFDFDRLITTRLIKPTG NAGATVVVMVVDCVDFDGSFPKRAAKSLFKLLEEGQTDSKLSKKLPKLVLVATKVDLL PSQISPTRLDRWVRHRAKAGGAPKLNGVYLVSSRKDLGVKNLLSFIKELAGPRGNVWV IGAQNAGKSTLINAFAKKEKANTTRLTEAPVPGTTLGILRIGGILSAKAKMYDTPGLL HPYLMSMRLNRDEQKMVEIRKELKPRTYRVKVGQAVHVGGLMRLDLNHASVETIYVTI WASPNISLHLGKVENADEIQKKHVGIRLQPPIGEDRASELGKWEEREVKVSGSSWDAN SIDIAAAGLGWFSLGLKGEATLALWTYDGIEITLREPLVLDRAPFLERPGFWLPKAIS DAIGNQSKLESQKRKKKIEQSTDYLSEVSA" CDS complement(join(26047882..26048235,26049079..26049246, 26049996..26051396)) /locus_tag="TCM_024485" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28470.m000432; paralog of Thecc1EG004443t1" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /protein_id="EOY09099.1" /db_xref="TAIR:AT3G57180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HLN1" /translation="MHSIKPICKNTTFTGLGDKNNKQNKVSTISLAVKNQSSNQTTEK IHGKVSPRRGNNPVSSEGRDGDQNYGPICPGCGIFMQDKDPNLPGYYQERKVFGRKVA ANEDEDDLLEYFGDELEGLDDDVEEEEEEEEEDFVDDIEGNDAKEDNLGEGDEFDWDS DEWEAKFIKGGDDLEFDGFAPATVGYGNITEENMEKGKRKRLSKAVRKRMAREAKDEE EVTVCARCHSLRHHGQVKNQSTENLIPDFDFDRLITTRLIKPTGNAGATVVVMVVDCV DFDGSFPKRAAKSLFKLLEEGQTDSKLSKKLPKLVLVATKVDLLPSQISPTRLDRWVR HRAKAGGAPKLNGVYLVSSRKDLGVKNLLSFIKELAGPRGNVWVIGAQNAGKSTLINA FAKKEKANTTRLTEAPVPGTTLGILRIGGILSAKAKMYDTPGLLHPYLMSMRLNRDEQ KMVEIRKELKPRTYRVKVGQAVHVGGLMRLDLNHASVETIYVTIWASPNISLHLGKVE NADEIQKKHVGIRLQPPIGEDRASELGKWEEREVKVSGSSWDANSIDIAAAGLGWFSL GLKGEATLALWTYDGIEITLREPLVLDRAPFLERPGFWLPKAISDAIGNQSKLESQKR KKKIEQSTDYLSEVSA" gene 26053634..26061371 /locus_tag="TCM_024486" /note="dbxref CacaoGD:Thecc1EG024486" mRNA join(26053634..26053960,26054052..26054153, 26054655..26054717,26054856..26054950,26055186..26055283, 26055470..26055521,26055927..26056172,26056471..26056581, 26056860..26057495,26058741..26058850,26059825..26059883, 26059972..26060159,26060646..26060867,26061037..26061371) /locus_tag="TCM_024486" /product="N-acetyltransferases,N-acetyltransferases, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g28780.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s04360.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5476t2" mRNA join(26053864..26053960,26054052..26054153, 26054655..26054717,26054856..26054950,26055186..26055283, 26055470..26055521,26055927..26056019,26056471..26056581, 26056860..26057495,26058741..26058850,26059825..26059883, 26059972..26060159,26060646..26061307) /locus_tag="TCM_024486" /product="N-acetyltransferases,N-acetyltransferases, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g28780.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s04360.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5476t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5476t2" CDS join(26053915..26053960,26054052..26054153, 26054655..26054717,26054856..26054950,26055186..26055283, 26055470..26055521,26055927..26056172,26056471..26056581, 26056860..26057495,26058741..26058850,26059825..26059883, 26059972..26060159,26060646..26060834) /locus_tag="TCM_024486" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="N-acetyltransferases,N-acetyltransferases, putative isoform 1" /protein_id="EOY09100.1" /db_xref="Phytozome:POPTR_0006s04360.1" /db_xref="TAIR:AT2G41450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BMR0" /translation="MHPRKSSSSLSPILVGNCEVLIDANKYSCNSDSNSLQISISKNT NIKISVREEMNTKSGNDLLPSKSEGKGEEGRCSAAKNKYMFVLVNPKDVDGATKSYLQ EALKLYNGELPTMNYAANTGKQSMFLERCLSNGKYCTLLLKYKPFEEFEEVIAAITYQ IIPADTQFAEIPLAAVNSIYQHKVHCLPRCLDVFHSLVCCLLLFKISLSSGLLEEWTY TVSNNTGDGCFSNYDNGFGRFLYMELKKRLQSVGIRTILCWGDEESEGFWLKQGFVSI AEVDKKGRARRLPIKADIRKALCFPGGSTLMVSHLSKDASAAGEYLSFSYPLKLYEKS QSSAPDKSLGQKAANVAAKQCSCSSQGAKRKVWEASLSSLKTKKVKGTHEIDSHQNGC QLDSNRRIIADSDRYGSWLDRCSVSTDKSLVEVTPGVSLINNFMESEAQEGRPNCMTP EALATKELQSNRDCFRIMLMNIADDTKKTHLTKVIENLGGTPTSDGRISTHIVTGKVR KTLNFCTAFCSGAWIVSPSWLKESFREGKFVDELPYILHDEDYVLKYRTELKDSIFRA KARPGALLKGYNLCIAAHVQPPVTTLSAIIRSAGGNIIRGVDKVKEASKTIFIACADD MEEALSAVKKGIWTFSSEWLMNCVMRQELDLEAPQFAESL" CDS join(26053915..26053960,26054052..26054153, 26054655..26054717,26054856..26054950,26055186..26055283, 26055470..26055521,26055927..26056019,26056471..26056581, 26056860..26057495,26058741..26058850,26059825..26059883, 26059972..26060159,26060646..26060834) /locus_tag="TCM_024486" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="N-acetyltransferases,N-acetyltransferases, putative isoform 2" /protein_id="EOY09101.1" /db_xref="Phytozome:POPTR_0006s04360.1" /db_xref="TAIR:AT2G41450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BMR0" /translation="MHPRKSSSSLSPILVGNCEVLIDANKYSCNSDSNSLQISISKNT NIKISVREEMNTKSGNDLLPSKSEGKGEEGRCSAAKNKYMFVLVNPKDVDGATKSYLQ EALKLYNGELPTMNYAANTGKQSMFLERCLSNGKYCTLLLKYKPFEEFEEVIAAITYQ IIPADTQFAEIPLAAVNSIYQHKGFGRFLYMELKKRLQSVGIRTILCWGDEESEGFWL KQGFVSIAEVDKKGRARRLPIKADIRKALCFPGGSTLMVSHLSKDASAAGEYLSFSYP LKLYEKSQSSAPDKSLGQKAANVAAKQCSCSSQGAKRKVWEASLSSLKTKKVKGTHEI DSHQNGCQLDSNRRIIADSDRYGSWLDRCSVSTDKSLVEVTPGVSLINNFMESEAQEG RPNCMTPEALATKELQSNRDCFRIMLMNIADDTKKTHLTKVIENLGGTPTSDGRISTH IVTGKVRKTLNFCTAFCSGAWIVSPSWLKESFREGKFVDELPYILHDEDYVLKYRTEL KDSIFRAKARPGALLKGYNLCIAAHVQPPVTTLSAIIRSAGGNIIRGVDKVKEASKTI FIACADDMEEALSAVKKGIWTFSSEWLMNCVMRQELDLEAPQFAESL" gene 26061882..26066803 /locus_tag="TCM_024487" /note="dbxref CacaoGD:Thecc1EG024487" mRNA join(26061882..26062240,26063114..26063331, 26063634..26063834,26064508..26064720,26064899..26065076, 26065908..26066803) /locus_tag="TCM_024487" /product="Peptide chain release factor 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033556001" /inference="similar to AA sequence:Phytozome:GSVIVT01033556001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g06886t00001" CDS join(26062078..26062240,26063114..26063331, 26063634..26063834,26064508..26064720,26064899..26065076, 26065908..26066197) /locus_tag="TCM_024487" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Peptide chain release factor 2 isoform 1" /protein_id="EOY09102.1" /db_xref="Phytozome:GSVIVT01033556001" /db_xref="TAIR:AT3G57190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L7M2" /translation="MTAEVVFARGHAIPALTPWQSSSTKRKSKPTQFLHFTVRACHSI DDKNRVYKQLGLFSLKKKIEDIILRAEMLAPTALELEEARRIKQEQMIRDYNLWDDPV KSNEILVKLADSAKMVDALKDLKYKAEEAKLITQLAEIDAVNYSLFEQAYDASLVVSD LLDKYEVSKLLRGPYDMEGACVIIKAGSGGNKSEVWAEQLLSMYIKWAEKQGYRGRLV EKNLSADGGIKSATIEFEFEYAYGYLSGERGVHFMIRSSQKGSVRREVSSVGVDVVPV FLGSTPDLQISDEDLILSAPLLLGENKSLTAYTVCVQHIPTGITVQSSGERSYFANQI KALNRLKAKLLVIANEQGVSTVSSIKADAFVDVWEKETRRYMFHPSKLVQDIKTGLEL ADLNSVLDGNIEPLIGAHINIRQPNCTI" mRNA join(26062131..26062240,26063134..26063331, 26063634..26063834,26064508..26064720,26064899..26065076, 26065908..26066319) /locus_tag="TCM_024487" /product="Peptide chain release factor, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033556001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025105t2" /inference="similar to AA sequence:Phytozome:POPTR_0006s04370.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc375t4; inference alignment:Newbler:10:TSA:cgbaP2_g06886t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5489t1" CDS join(26062211..26062240,26063134..26063331, 26063634..26063834,26064508..26064720,26064899..26065076, 26065908..26066197) /locus_tag="TCM_024487" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG025105t2" /codon_start=1 /product="Peptide chain release factor, putative isoform 2" /protein_id="EOY09103.1" /db_xref="Phytozome:POPTR_0006s04370.1" /db_xref="TAIR:AT3G57190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L7M2" /translation="MTRTGSISNWKIEDIILRAEMLAPTALELEEARRIKQEQMIRDY NLWDDPVKSNEILVKLADSAKMVDALKDLKYKAEEAKLITQLAEIDAVNYSLFEQAYD ASLVVSDLLDKYEVSKLLRGPYDMEGACVIIKAGSGGNKSEVWAEQLLSMYIKWAEKQ GYRGRLVEKNLSADGGIKSATIEFEFEYAYGYLSGERGVHFMIRSSQKGSVRREVSSV GVDVVPVFLGSTPDLQISDEDLILSAPLLLGENKSLTAYTVCVQHIPTGITVQSSGER SYFANQIKALNRLKAKLLVIANEQGVSTVSSIKADAFVDVWEKETRRYMFHPSKLVQD IKTGLELADLNSVLDGNIEPLIGAHINIRQPNCTI" mobile_element complement(26066539..26066574) /note="source:CACAO_Again_on_E205_scaffold_9 11974 12010" /mobile_element_type="transposon:TIR/hAT" mobile_element 26066579..26066760 /note="source:CACAO_Again_on_E5_scaffold_1 23 212" /mobile_element_type="transposon:TIR/hAT" gene 26066793..26085075 /locus_tag="TCM_024488" /note="dbxref CacaoGD:Thecc1EG024488" mRNA join(26066793..26067309,26070280..26070686, 26072416..26072635,26074332..26074543,26075766..26075831, 26076189..26076298,26077596..26077656,26078542..26078625, 26079321..26079377,26079623..26079683,26079974..26080020, 26080151..26080228,26081180..26081509,26081697..26081775, 26082619..26082774,26084055..26084248,26084382..26085075) /locus_tag="TCM_024488" /product="Dhfs-fpgs c isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s04130.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042683t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s04390.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:PASA:2:TSA:puevd3b023680t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5504t2" mRNA join(26066794..26067309,26070641..26070686, 26072416..26072635,26074332..26074543,26075766..26075831, 26076189..26076298,26077596..26077656,26078542..26078625, 26079321..26079377,26079623..26079683,26079974..26080020, 26080151..26080228,26080728..26080886,26081180..26081509, 26081697..26081775,26082619..26082774,26084055..26084248, 26084382..26085075) /locus_tag="TCM_024488" /product="Dhfs-fpgs c isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s04130.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042683t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s04390.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5504t2" mobile_element 26066818..26069133 /note="source:CACAO_Again_on_E5_scaffold_1 3736 5879" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(26069109..26069251) /note="source:CACAO_Again_on_E205_scaffold_9 234 376" /mobile_element_type="transposon:TIR/hAT" mobile_element 26069310..26069460 /note="source:CACAO_Again_on_E5_scaffold_1 5883 6035" /mobile_element_type="transposon:TIR/hAT" CDS join(26072431..26072635,26074332..26074543, 26075766..26075831,26076189..26076298,26077596..26077656, 26078542..26078625,26079321..26079377,26079623..26079683, 26079974..26080020,26080151..26080228,26080728..26080886, 26081180..26081509,26081697..26081775,26082619..26082774, 26084055..26084248,26084382..26084441) /locus_tag="TCM_024488" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042683t1" /codon_start=1 /product="Dhfs-fpgs c isoform 1" /protein_id="EOY09104.1" /db_xref="Phytozome:POPTR_0006s04390.1" /db_xref="TAIR:AT3G10160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4J2K2" /translation="MIGHANTVLKCGIFGLSNFHEQEQFFFTPGQIFSCLAISLHNQG LTRDGRLQARTKSGSKLHQCSTLYGFRYSNMSSQVLENMGSNEVIRDYLEDVPLSFSY EPAMDALSSLITRQKRGERSNVMGKYGKLDRMLMYLKILGLEEQVAGLKIIHVAGTKG KGSTCTFCEAILRESGFRTGLFTSPHLIDVRERFRLDGLEISEEKFLQYFWNCWHILK ENITDALPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLGGTRDSTNVIKQPVVCGITS LGMDHMETLGNTLGQIALHKAGIFKHQIPAFTVPQLSEAMEVLQERAHELMVPLNVAA PLDSKNLKGVKISLSGDHQLINAGLAVSLCKCWLQRTGNWEKILHNDSQETDIPEAFC RGLSTACLSGRAEIVYDKFSKYYNSSATDENSCGNLIFYLDGAHSPESMEACARWFSS VAKGNGKVSPLSLSALRNFGNGCARHIKDKVEESHVISKQILLFNCMEVRDPQVLLTH LVNACSSSGTHLSKALFVPNMSKYNKVTSGTSITASDSTSGDFSWQFSLQRIWEKVIH GPDPVLDRSTMMNRTVSLPSLEFLYEDAFHCSAADQHLACSAVMPSLPQTIKWLRDCV KEKPSVRVQVLVTGSLHLVGDVLKLLRR" CDS join(26072431..26072635,26074332..26074543, 26075766..26075831,26076189..26076298,26077596..26077656, 26078542..26078625,26079321..26079377,26079623..26079683, 26079974..26080020,26080151..26080228,26081180..26081509, 26081697..26081775,26082619..26082774,26084055..26084248, 26084382..26084441) /locus_tag="TCM_024488" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042683t1" /codon_start=1 /product="Dhfs-fpgs c isoform 2" /protein_id="EOY09105.1" /db_xref="Phytozome:POPTR_0006s04390.1" /db_xref="TAIR:AT3G10160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4J2K2" /translation="MIGHANTVLKCGIFGLSNFHEQEQFFFTPGQIFSCLAISLHNQG LTRDGRLQARTKSGSKLHQCSTLYGFRYSNMSSQVLENMGSNEVIRDYLEDVPLSFSY EPAMDALSSLITRQKRGERSNVMGKYGKLDRMLMYLKILGLEEQVAGLKIIHVAGTKG KGSTCTFCEAILRESGFRTGLFTSPHLIDVRERFRLDGLEISEEKFLQYFWNCWHILK ENITDALPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLGGTRDSTNVIKQPVVCGITS LGMDHMETLGNTLGQIALHKAGIFKHQIPAFTVPQLSEAMEVLQERAHELMDSQETDI PEAFCRGLSTACLSGRAEIVYDKFSKYYNSSATDENSCGNLIFYLDGAHSPESMEACA RWFSSVAKGNGKVSPLSLSALRNFGNGCARHIKDKVEESHVISKQILLFNCMEVRDPQ VLLTHLVNACSSSGTHLSKALFVPNMSKYNKVTSGTSITASDSTSGDFSWQFSLQRIW EKVIHGPDPVLDRSTMMNRTVSLPSLEFLYEDAFHCSAADQHLACSAVMPSLPQTIKW LRDCVKEKPSVRVQVLVTGSLHLVGDVLKLLRR" mobile_element complement(26085977..26086012) /note="source:CACAO_Mutator_E1149_scaffold_5 4727 4762" /mobile_element_type="transposon:TIR/Mutator" mobile_element 26086690..26086813 /note="source:scaffold_1_CACTA_0009 1631 1754" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(26086871..26087942) /note="source:CACAO_M_E33977_F20_scaffold_4 15228 16351" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26087973..26102218 /note="source:CACAO_Mutator_E1149_scaffold_5 1 13722" /mobile_element_type="transposon:TIR/Mutator" gene 26090851..26092418 /locus_tag="TCM_024491" /note="dbxref CacaoGD:Thecc1EG024491" mRNA 26090851..26092418 /locus_tag="TCM_024491" /product="Uncharacterized protein" /note="quality class is medium-expresste, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.38 coverage" CDS 26091149..26091481 /locus_tag="TCM_024491" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09106.1" /translation="MWKLMLSLVGFRSTFGVMSAYWDVAMVVTGSIGVLGRDNMHGVL PHYRLTHSCICAMFCRCSSDSMKILTVCLLCRGRSGCSMSLLTPTISGPNFITSIRPY KRKRSMMQ" mobile_element complement(26102671..26102885) /note="source:INTACT711_F307_scaffold_9-int 1775 1986" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26103644..26103676 /note="source:CACAO_M_S_E64023_F13_scaffold_5 764 796" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26105447..26106599 /note="source:INTACT135F_F90_scaffold_2-int 12866 14004" /mobile_element_type="retrotransposon:LTR/Copia" gene 26107072..26114472 /locus_tag="TCM_024494" /note="dbxref CacaoGD:Thecc1EG024494" mRNA join(26107072..26107596,26109210..26109359, 26109470..26109522,26110140..26110248,26110358..26110492, 26110638..26110682,26110894..26111081,26111980..26112121, 26112946..26112992,26113475..26113562,26113706..26114472) /locus_tag="TCM_024494" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000861001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042386t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s04140.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc277t6" CDS join(26107240..26107596,26109210..26109359, 26109470..26109522,26110140..26110248,26110358..26110492, 26110638..26110682,26110894..26111081,26111980..26112121, 26112946..26112992,26113475..26113562,26113706..26113981) /locus_tag="TCM_024494" /note="paralog of Thecc1EG042386t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09107.1" /db_xref="Phytozome:POPTR_0016s04140.1" /db_xref="TAIR:AT3G57200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9SZX1" /translation="MAGLYSSSRPSSSSSSSSSSLSSSQQTFTSRLLLLLTLLPLTLA FFAFILQWRGGLTDPITRWSPDPFQFPGMVNSGSNSPSDRRSASGCVDLLGQSRSPAF PYYKDWKFDFGSDLRPKICIISSTSAGLEQTLPWIFYHKVIGVSTFFLFVEGKAASPN VSKVLESIPGVKVIYRTKELEEQQAKSRIWNETWLASFFYKPCNYELFVKQSLNMEMA IVMARDAGMDWIIHLDTDELIHPAGAREYSLRQLLSDVPGNVDMVVFPNYESSVERDD IKEPFTEVSMFKKNYDHLPKDVYFGNYKDATRGNPNYFLTYGNGKSAARIQDHLRPNG AHRWHNYMKTPKEIKLDEAAVLHYTYPKFSDLTSRRDRCGCKPTKEDVKRCFMLEFDR AAFIIASTATEEEMLRWYRERVVWTDKALNLKLLRKGILARIYAPMVVIQGLRESGIF SSIVQSAQTTLSKDKFLTSVESSNSSRVDKPGIISSRKIGVTESQATARRILEITNEF SYNSAIPPLSPPVLDDMHMVI" gene 26114671..26122016 /locus_tag="TCM_024495" /note="dbxref CacaoGD:Thecc1EG024495" mRNA join(26114671..26114859,26114954..26115134, 26115368..26115432,26115834..26115913,26116089..26116334, 26116493..26116818,26117708..26117818,26118496..26118617, 26118719..26118747) /locus_tag="TCM_024495" /product="Apurinic endonuclease-redox protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma02g34700.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033553001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1161t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5510t2" mRNA join(26114674..26114859,26114954..26115134, 26115368..26115432,26115834..26115913,26116089..26116334, 26116493..26116818,26117708..26117818,26118480..26118617, 26118719..26118766,26119901..26119981,26120606..26120765, 26121105..26122016) /locus_tag="TCM_024495" /product="Apurinic endonuclease-redox protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma02g34700.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033553001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5510t2" CDS join(26114810..26114859,26114954..26115134, 26115368..26115432,26115834..26115913,26116089..26116334, 26116493..26116818,26117708..26117818,26118480..26118617, 26118719..26118766,26119901..26119981,26120606..26120765, 26121105..26121226) /locus_tag="TCM_024495" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Apurinic endonuclease-redox protein, putative isoform 1" /protein_id="EOY09108.1" /db_xref="Phytozome:GSVIVT01033553001" /db_xref="TAIR:AT2G41460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P45951" /translation="MNQASPLGFKTLINLSSFAAAPRSLGVGRFVPSRGKVMGSKRRS FSTSSSIDDQNIDKKPKGVIDNNNPISDKPLLKNFKDDPGKIEAMTVQQLRTALRSAG VPAKGSKRDLVSALQCYLAKEIDGGSSFLADKQDPSNYDESISIRMEAGSIEDQVQDV NTISKVSRVQRSRRTLNQMQIKGETVEVDTKIVTIEQKLSVKTGRASGRKPSQTKRKV SSDVDSKDVSAENGVTLTVNQSEPWTIFAHKKPQKGWIAYNPRIMRPPPPMGNPKFVK VLSWNVNGLRALLKLEGFSALQLAERENFDVLCLQETKLQEKDVKSIKQSLIEGYENS FWTCSNSKLGYAGTAIISRIKPLSVRYGLGKSDHDSEGRVVTAEFDSFYLLSVYVPNS GDGLRRLTYRITEWDPALSNYIKELEKSKPVILTGDLNCAHEEIDIYNPAGNKRSAGF TIEERQSFGTNFLSRGFVDTFRKQHPGAVGYTYWGYRHGVRKTNKGWRLDYFLVSEAI ADDVHDSYILPDVMGSDHCPIGLTLKV" CDS join(26114810..26114859,26114954..26115134, 26115368..26115432,26115834..26115913,26116089..26116334, 26116493..26116818,26117708..26117818,26118496..26118510) /locus_tag="TCM_024495" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Apurinic endonuclease-redox protein, putative isoform 2" /protein_id="EOY09109.1" /db_xref="Phytozome:GSVIVT01033553001" /db_xref="TAIR:AT2G41460.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B3H7C2" /translation="MNQASPLGFKTLINLSSFAAAPRSLGVGRFVPSRGKVMGSKRRS FSTSSSIDDQNIDKKPKGVIDNNNPISDKPLLKNFKDDPGKIEAMTVQQLRTALRSAG VPAKGSKRDLVSALQCYLAKEIDGGSSFLADKQDPSNYDESISIRMEAGSIEDQVQDV NTISKVSRVQRSRRTLNQMQIKGETVEVDTKIVTIEQKLSVKTGRASGRKPSQTKRKV SSDVDSKDVSAENGVTLTVNQSEPWTIFAHKKPQKGWIAYNPRIMRPPPPMGNPKFVK VLSWNVNGLRALLKLEGFSALQLAERENFDVLCLQETKLQEKDVKSIKQSLIEGYENS FWTCSNSKLGYAGTAIISRSDMA" gene 26122218..26128812 /locus_tag="TCM_024496" /note="dbxref CacaoGD:Thecc1EG024496" mRNA join(26122218..26122695,26123167..26123254, 26124280..26124371,26124498..26124616,26126332..26126447, 26126518..26126645,26126740..26126826,26127443..26127503, 26127622..26127662,26127751..26127871,26128257..26128812) /locus_tag="TCM_024496" /product="UDP-glcnac-adolichol phosphate glcnac-1-p-transferase" /inference="alignment:exonerate- protein:2:ricco:28470.m000439" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400022539" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5613t1" CDS join(26122340..26122695,26123167..26123254, 26124280..26124371,26124498..26124616,26126332..26126447, 26126518..26126645,26126740..26126826,26127443..26127503, 26127622..26127662,26127751..26127871,26128257..26128316) /locus_tag="TCM_024496" /codon_start=1 /product="UDP-glcnac-adolichol phosphate glcnac-1-p-transferase" /protein_id="EOY09110.1" /db_xref="Phytozome:PGSC0003DMP400022539" /db_xref="TAIR:AT2G41490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M2M5" /translation="MAARKRASATTATPTETKPNPPLTQETTTQTDPPISPPKKGLIF KLCLFFSISYFYLLFQRYKIEQDLKRSILINAALSVAGFFLTQRMIPVASRYVLKRNL FGFDINKKGTPQGTVKVPESLGIVVGIVFLVLAILFQYFNFTADSNWLVEYNAALASI CFMILLGFVDDVLDVPWRVKLLLPSIAALPLLMAYAGHTTIIIPKPLVSFVGLEVLDL GCVYKLYMGLLAVFCTNSINIHAGLNGLEVGQTVVIASAILIHNIMQIGASSDPEYKQ AHAFSIYLVQPLLATSLALLSYNWYPSSVFVGDTYTYFAGMTMAVVGILGHYSETLLI FFLPQVLNFLLSLPQLSGYVKCPRHRLPRFNPETGLLTGTHDGTLVNFYLRIVGPKSE KSLCLHLLFVQALGCCFCFMLRYFLAGWYK" mobile_element complement(26129254..26129386) /note="source:CACAO_on_E33_A_scaffold_3 7404 7567" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(26129376..26129638) /note="source:CACAO_on_E33_A_scaffold_3 2908 3175" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 26135269..26136709 /note="source:CACAO_M_S_E66261_F9_scaffold_5 1 1441" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26141649..26141914) /note="source:CACAO_M_E49195_F17_scaffold_6 1254 1521" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(26143545..26154569) /locus_tag="TCM_024498" /note="dbxref CacaoGD:Thecc1EG024498" mRNA complement(join(26143545..26144729,26145880..26146031, 26154563..26154569)) /locus_tag="TCM_024498" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:TAIR:AT5G03990.1" /inference="similar to AA sequence:ricco:28470.m000442" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02859t00001" CDS complement(join(26143903..26144729,26145880..26145970)) /locus_tag="TCM_024498" /note="dbxref ricco:28470.m000442" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09111.1" /db_xref="TAIR:AT5G03990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IHW2" /translation="MNHNNWRRQKGEIHHQEMQGTRSHSRKPPLATWQPTVPSWEKKF CTLVGSVPWRKLLETKRFMYLYDNVVQWNDSAGEEAFYNAKNRFWAEINGLPCDIRLP DPDSYIDEIDWDSEIDPELLLDLEREPNTPDEKDKSENVVILGNSLLLNQSFSCGGWG DAEEGVVKENNMSSNWKNQDCENSWEQNYASNNCNMKDIEYRNCWNNSWEWNRRENNY NEWDNNESNYVDYRSGDWDAWDGTRRKREGPGRYMSRYKTSRFHSDNRQNNRGWRNVR GRQRANFAYERPPVDSTQWNSVNYCGWAN" mobile_element 26147731..26147874 /note="source:INTACT298_F14_scaffold_10-int 12285 12408" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26147775..26147860) /note="source:CACAO_M_S_E118676_F14_scaffold_9 930 1019" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(26152676..26159044) /locus_tag="TCM_024500" /note="dbxref CacaoGD:Thecc1EG024500" mRNA complement(join(26152676..26152702,26154457..26154983, 26155174..26155211,26155753..26156137,26158760..26159044)) /locus_tag="TCM_024500" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.15 coverage" CDS complement(join(26154787..26154983,26155174..26155211, 26155753..26156129)) /locus_tag="TCM_024500" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09112.1" /translation="MIEVISKLFKDHQSIQHQCCLKSRWVKVEEIPCHIWHEDSFRAI TNAWGKFIKIDHNNDEKWRLDFAMILVEVKSLRIIKAFIDISVNGKEYYVRAFVSNIL QSNPLIRLANVVEGYSLEDMVWKASKEDGIGLGLSGSILSERADGNNKVPNLVVQEEL YGVKKAASFALRRRCQVRKKIHKCLNHDSDVFVTKCQREAELT" mobile_element 26156214..26156406 /note="source:CACAO_M_E3884_F22_scaffold_1 12940 13129" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26157268..26158836 /note="source:INTACT700_F304_scaffold_7-int 14953 16511" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26159200..26159385) /note="source:INTACT444_F216_scaffold_4-int 18214 18415" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26162368..26175072 /note="source:INTACT700_F304_scaffold_7-int 3820 16511" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26175837..26175951 /note="source:CACAO_M_E12044_F76_scaffold_2 20763 20868" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26176224..26176552 /note="source:scaffold_5_CACTA_0614 6086 6405" /mobile_element_type="transposon:TIR/CACTA" mobile_element 26176286..26176570 /note="source:CACAO_M_E58877_F5_scaffold_9 20439 20725" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26176389..26176614) /note="source:INTACT375F_F353_scaffold_3-int 14443 14647" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26177429..26178441 /note="source:CACAO_M_E43872_F85_scaffold_5 1 1013" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26179120..26180804 /note="source:CACAO_M_E43872_F85_scaffold_5 1014 2698" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26180805..26180830 /note="source:INTACT413_F209_scaffold_13-int 9607 9627" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 26184620..26184883 /note="source:scaffold_5_CACTA_0614 2198 2471" /mobile_element_type="transposon:TIR/CACTA" gene 26185115..26191532 /locus_tag="TCM_024504" /note="dbxref CacaoGD:Thecc1EG024504" mRNA join(26185115..26185690,26188185..26188409, 26188943..26189252,26189596..26189764,26191058..26191532) /locus_tag="TCM_024504" /product="Purple acid phosphatase 16 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033547001" /inference="similar to AA sequence:Phytozome:POPTR_0016s04190.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5542t1" mRNA join(26185379..26185690,26188185..26188409, 26188976..26189252,26189596..26189764,26191058..26191365) /locus_tag="TCM_024504" /product="Purple acid phosphatase 16 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033547001" /inference="similar to AA sequence:Phytozome:POPTR_0016s04190.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08910t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5542t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc846t6_C1" CDS join(26185417..26185690,26188185..26188409, 26188943..26189252,26189596..26189764,26191058..26191270) /locus_tag="TCM_024504" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Purple acid phosphatase 16 isoform 1" /protein_id="EOY09113.1" /db_xref="Phytozome:POPTR_0016s04190.1" /db_xref="TAIR:AT3G10150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SR79" /translation="MARSLSNFTIFSLPCLSILFQAIISTVGSSHQTVTLRTTPENHF RTRVGAPFKLALFADLHFGENAWTEWGPQQDVNSIKVMSSVLDSETPDFVVYLGDVIT ANNIPIANASLYWDQALSPTRSRGIPWASVFGNHDDAPFEWPMEWFSASAIPQLVCPM VNSSCSAFINRGQSYLSGEQECSFRGTSRLELMKNEMDNNLLSFSRSGPKDLWPGISN YVLQVSSQEKPETPIVYLYFLDSGGGTYPEVISSAQAEWFKRKSEEINAESRIPEIIF WHIPSKAYKKVAPKFRIHKPCVGSINKEKAAAQEAEMGIMKVLVRRPSVKAVFVGHNH GLDWCCPYRKLWLCFARHTGYGGYGNWPRGSRILEISEEPFSIKSWIRMEEGNVHSEV ILSS" CDS join(26185417..26185690,26188185..26188409, 26188976..26189252,26189596..26189764,26191058..26191270) /locus_tag="TCM_024504" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Purple acid phosphatase 16 isoform 2" /protein_id="EOY09114.1" /db_xref="Phytozome:POPTR_0016s04190.1" /db_xref="TAIR:AT3G10150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SR79" /translation="MARSLSNFTIFSLPCLSILFQAIISTVGSSHQTVTLRTTPENHF RTRVGAPFKLALFADLHFGENAWTEWGPQQDVNSIKVMSSVLDSETPDFVVYLGDVIT ANNIPIANASLYWDQALSPTRSRGIPWASVFGNHDDAPFEWPMEWFSASAIPQLVCPM VNSSCSGEQECSFRGTSRLELMKNEMDNNLLSFSRSGPKDLWPGISNYVLQVSSQEKP ETPIVYLYFLDSGGGTYPEVISSAQAEWFKRKSEEINAESRIPEIIFWHIPSKAYKKV APKFRIHKPCVGSINKEKAAAQEAEMGIMKVLVRRPSVKAVFVGHNHGLDWCCPYRKL WLCFARHTGYGGYGNWPRGSRILEISEEPFSIKSWIRMEEGNVHSEVILSS" gene 26195789..26199707 /locus_tag="TCM_024505" /note="dbxref CacaoGD:Thecc1EG024505" mRNA join(26195789..26195936,26196144..26196183, 26196587..26196727,26196840..26197127,26197705..26197935, 26198330..26198461,26198693..26199609) /locus_tag="TCM_024505" /product="IQ-domain 12, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400022535" /inference="similar to AA sequence:Phytozome:POPTR_0006s04450.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc548t1; alternateUTRof:Thecc1EG024505t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc553t2" mRNA join(26195791..26196174,26196587..26196727, 26196840..26197127,26197705..26197935,26198330..26198461, 26198693..26199707) /locus_tag="TCM_024505" /product="IQ-domain 12, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400022535" /inference="similar to AA sequence:Phytozome:POPTR_0006s04450.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:PASA:2:TSA:puevd3b023696t1a3; alternateUTRof:Thecc1EG024505t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc553t2" mRNA join(26195791..26195936,26196590..26196727, 26196840..26197127,26197705..26197935,26198330..26198461, 26198693..26199633) /locus_tag="TCM_024505" /product="IQ-domain 12, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400022535" /inference="similar to AA sequence:Phytozome:POPTR_0006s04450.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5554t1; alternateUTRof:Thecc1EG024505t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc553t2" mRNA join(26195902..26195936,26196587..26196727, 26196840..26197127,26197705..26197935,26198330..26198461, 26198693..26199707) /locus_tag="TCM_024505" /product="IQ-domain 12, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400022535" /inference="similar to AA sequence:Phytozome:POPTR_0006s04450.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc553t2" mRNA join(26195920..26196174,26196590..26196727, 26196840..26197127,26197705..26197935,26198330..26198461, 26198693..26199523) /locus_tag="TCM_024505" /product="IQ-domain 12, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400022535" /inference="similar to AA sequence:Phytozome:POPTR_0006s04450.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04930t00001; alternateUTRof:Thecc1EG024505t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc553t2" CDS join(26196644..26196727,26196840..26197127, 26197705..26197935,26198330..26198461,26198693..26199205) /locus_tag="TCM_024505" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="IQ-domain 12, putative isoform 1" /protein_id="EOY09115.1" /db_xref="Phytozome:POPTR_0006s04450.1" /db_xref="TAIR:AT5G03960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IHW5" /translation="MNSMGKKRSWFSWVKKIFTSDAKTKTEKKSRRWRWILGRLKLKQ YHPALPAPQTSFCQATEEQRKHALNVAIATAAAAEAAVAAAQAAAEVVRLAGASKPFP HFTTRDRNLAAIKIQSAFRAYLARKALQALKGLVKLQALVRGQAVRRQVMKNMKSLQS GEKMYPEVKEKIPPTTKVICQDIRRKQSLMHKDEVGEKDVKHECNSQKSWNDSVLSKE DFEAIWLRRQEAIAKRERMKKYSYSHRERANTHMLEESVLQKELGSCSFMEPGANAEA NKRERVMLLKPNVPSNLSTWEAHGPPHVRFENMRKQDTLEELNSPFLFPRRSFCRVLQ SASGDEGSIPNSPAFPTYMVATESAKAKARSMSTPRQRVGFLDTFFDYSTPYKGGLSF WSTYNGEPFSINEKNSLPRYRLY" CDS join(26196644..26196727,26196840..26197127, 26197705..26197935,26198330..26198461,26198693..26199205) /locus_tag="TCM_024505" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="IQ-domain 12, putative isoform 1" /protein_id="EOY09116.1" /db_xref="Phytozome:POPTR_0006s04450.1" /db_xref="TAIR:AT5G03960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IHW5" /translation="MNSMGKKRSWFSWVKKIFTSDAKTKTEKKSRRWRWILGRLKLKQ YHPALPAPQTSFCQATEEQRKHALNVAIATAAAAEAAVAAAQAAAEVVRLAGASKPFP HFTTRDRNLAAIKIQSAFRAYLARKALQALKGLVKLQALVRGQAVRRQVMKNMKSLQS GEKMYPEVKEKIPPTTKVICQDIRRKQSLMHKDEVGEKDVKHECNSQKSWNDSVLSKE DFEAIWLRRQEAIAKRERMKKYSYSHRERANTHMLEESVLQKELGSCSFMEPGANAEA NKRERVMLLKPNVPSNLSTWEAHGPPHVRFENMRKQDTLEELNSPFLFPRRSFCRVLQ SASGDEGSIPNSPAFPTYMVATESAKAKARSMSTPRQRVGFLDTFFDYSTPYKGGLSF WSTYNGEPFSINEKNSLPRYRLY" CDS join(26196644..26196727,26196840..26197127, 26197705..26197935,26198330..26198461,26198693..26199205) /locus_tag="TCM_024505" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="IQ-domain 12, putative isoform 1" /protein_id="EOY09117.1" /db_xref="Phytozome:POPTR_0006s04450.1" /db_xref="TAIR:AT5G03960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IHW5" /translation="MNSMGKKRSWFSWVKKIFTSDAKTKTEKKSRRWRWILGRLKLKQ YHPALPAPQTSFCQATEEQRKHALNVAIATAAAAEAAVAAAQAAAEVVRLAGASKPFP HFTTRDRNLAAIKIQSAFRAYLARKALQALKGLVKLQALVRGQAVRRQVMKNMKSLQS GEKMYPEVKEKIPPTTKVICQDIRRKQSLMHKDEVGEKDVKHECNSQKSWNDSVLSKE DFEAIWLRRQEAIAKRERMKKYSYSHRERANTHMLEESVLQKELGSCSFMEPGANAEA NKRERVMLLKPNVPSNLSTWEAHGPPHVRFENMRKQDTLEELNSPFLFPRRSFCRVLQ SASGDEGSIPNSPAFPTYMVATESAKAKARSMSTPRQRVGFLDTFFDYSTPYKGGLSF WSTYNGEPFSINEKNSLPRYRLY" CDS join(26196644..26196727,26196840..26197127, 26197705..26197935,26198330..26198461,26198693..26199205) /locus_tag="TCM_024505" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="IQ-domain 12, putative isoform 1" /protein_id="EOY09118.1" /db_xref="Phytozome:POPTR_0006s04450.1" /db_xref="TAIR:AT5G03960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IHW5" /translation="MNSMGKKRSWFSWVKKIFTSDAKTKTEKKSRRWRWILGRLKLKQ YHPALPAPQTSFCQATEEQRKHALNVAIATAAAAEAAVAAAQAAAEVVRLAGASKPFP HFTTRDRNLAAIKIQSAFRAYLARKALQALKGLVKLQALVRGQAVRRQVMKNMKSLQS GEKMYPEVKEKIPPTTKVICQDIRRKQSLMHKDEVGEKDVKHECNSQKSWNDSVLSKE DFEAIWLRRQEAIAKRERMKKYSYSHRERANTHMLEESVLQKELGSCSFMEPGANAEA NKRERVMLLKPNVPSNLSTWEAHGPPHVRFENMRKQDTLEELNSPFLFPRRSFCRVLQ SASGDEGSIPNSPAFPTYMVATESAKAKARSMSTPRQRVGFLDTFFDYSTPYKGGLSF WSTYNGEPFSINEKNSLPRYRLY" CDS join(26196644..26196727,26196840..26197127, 26197705..26197935,26198330..26198461,26198693..26199205) /locus_tag="TCM_024505" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="IQ-domain 12, putative isoform 1" /protein_id="EOY09119.1" /db_xref="Phytozome:POPTR_0006s04450.1" /db_xref="TAIR:AT5G03960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IHW5" /translation="MNSMGKKRSWFSWVKKIFTSDAKTKTEKKSRRWRWILGRLKLKQ YHPALPAPQTSFCQATEEQRKHALNVAIATAAAAEAAVAAAQAAAEVVRLAGASKPFP HFTTRDRNLAAIKIQSAFRAYLARKALQALKGLVKLQALVRGQAVRRQVMKNMKSLQS GEKMYPEVKEKIPPTTKVICQDIRRKQSLMHKDEVGEKDVKHECNSQKSWNDSVLSKE DFEAIWLRRQEAIAKRERMKKYSYSHRERANTHMLEESVLQKELGSCSFMEPGANAEA NKRERVMLLKPNVPSNLSTWEAHGPPHVRFENMRKQDTLEELNSPFLFPRRSFCRVLQ SASGDEGSIPNSPAFPTYMVATESAKAKARSMSTPRQRVGFLDTFFDYSTPYKGGLSF WSTYNGEPFSINEKNSLPRYRLY" gene complement(26199710..26204754) /locus_tag="TCM_024506" /note="dbxref CacaoGD:Thecc1EG024506" mRNA complement(join(26199710..26200317,26200485..26200886, 26201067..26201420,26201496..26204249,26204306..26204754)) /locus_tag="TCM_024506" /product="Serine-threonine protein kinase, plant-type, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400020383.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042542t1" /inference="similar to AA sequence:ricco:27732.m000285" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2587t1" CDS complement(join(26200286..26200317,26200485..26200886, 26201067..26201420,26201496..26203776)) /locus_tag="TCM_024506" /note="dbxref ricco:27732.m000285; paralog of Thecc1EG042542t1" /codon_start=1 /product="Serine-threonine protein kinase, plant-type, putative" /protein_id="EOY09120.1" /db_xref="TAIR:AT3G47570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SS82" /translation="MHLKVSWSLNFSVHVAVILIFCFNLKSPYLLGSATFVVNGNETD RQALLQFKAKMSGDQLGIMRLWNSSVHFCQWRGVKCSQRLQRVTKLDLRALRLMGSIS PFIGNLSFLRMLNLQNNSFSLGVPQEIGRLSRLQQLTLDRNFISGEIPSNLSGCSKLR RLYIGHNLLAGEIPATLSRLSSLKELGFSNNTLSGSIPPSLGNLTSLGTIYLSLNRFT GVIPESLGQLNNLTIFSVAVNEISGTVPSSLFNLSHIRCLDIGENNFQGSLPSQLGFN MPYLRIFSVSLNQLSGPFPLSITNASNLITLQVVGNKFAGNMSSFRKLEKLQSLNIAD NLLGSLGANDLKFLCSLTNNTSLEFVDISDNSFGGVLPECISNLSTAITVLAMQGNYI LGRIPAGIGNLFNLEVLVAGENQLSGSIPSVIGRLQKLQLFAVNVNSISGGVPSSLGN LKMLIKLYLNDNNLQGNIPPSLGKCVNLVLLDLSNNNLSGSIPSQIAGLSSLSIGLAL SSNRLTGVLPSEVGNLRNLGILDVSQNMLSGVIPNDLGNCIRLELLLMRGNFFQGSIP SSLSSLRGLTNLDISNNNLTGEIPKFLVTFDSLLYLNLSHNDFEGVVPVDGVFKNVSA AFLEGNAKLCGGTPQFHLPACDSLKQHRRRSTISRKLIIAIVSALFGVILVFSFIFGF WFRKKGKRPTSPNAENPCLRLSYQMILKATNGFSSANLVGTGSFGFVYKGVLEENRTI IAVKVFKLLSHGASRSFMAECNDFKALVYEFMANGSLEDWLHPPVGVNEAEAAKSLNI FQRLNVAVDVGCALEYLHYYCETPIVHCDLKPSNILLDDKMVGHVGDFGLAKFITSDM QNNTSSLSSSLGLRGTIGYAPPEYGLGSDVTTYGDVYSYGILLLEMFTGRRPTHDMFK DNLDLHKFVKIALPSRVAEIIDPILLQEGSGEDTMINHTSKESNPKDNKHLFYLNSIV EIGVACSVELPNQRMCMTDVVAELCSIRDKLLPTRSSGPTAAGTRWYFIG" mobile_element complement(26205165..26206668) /note="source:CACAO_M_E49492_F328_scaffold_7 1655 3160" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26207876..26210824 /note="source:CACAO_M_E43874_F134_scaffold_5 1 2949" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26211328..26211568) /note="source:CACAO_M_E11415_F328_scaffold_2 1 215" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26211569..26212226 /note="source:CACAO_M_S_E17777_F2_scaffold_3 11318 11913" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26212373..26213403 /note="source:CACAO_M_S_E17777_F2_scaffold_3 1195 2227" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26213397..26214136 /note="source:CACAO_M_S_E17777_F2_scaffold_3 8036 8778" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26214137..26214526) /note="source:scaffold_5_CACTA_0611 2012 5087" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(26214527..26217228) /note="source:CACAO_M_E69760_F9_scaffold_9 6707 9395" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26216928..26217276) /note="source:CACAO_M_E84368_F4_scaffold_10 13316 13655" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 26217229..26217516 /note="source:CACAO_M_S_E17777_F2_scaffold_3 8774 9061" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26217515..26220548) /note="source:CACAO_M_E44150_F74_scaffold_5 1511 4595" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26220744..26222239 /note="source:CACAO_M_S_E66269_F17_scaffold_5 1 1496" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26224896..26225121 /note="source:scaffold_8_CACTA_0857 648 896" /mobile_element_type="transposon:TIR/CACTA" gene complement(26226678..26234169) /locus_tag="TCM_024509" /note="dbxref CacaoGD:Thecc1EG024509" mRNA complement(join(26226678..26228021,26228234..26228391, 26234019..26234169)) /locus_tag="TCM_024509" /product="Glucan endo-1,3-beta-glucosidase, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s04460.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024514t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s04670.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc2012t1" CDS complement(join(26227078..26228021,26228234..26228391, 26234019..26234056)) /locus_tag="TCM_024509" /note="paralog of Thecc1EG024514t1" /codon_start=1 /product="Glucan endo-1,3-beta-glucosidase, putative" /protein_id="EOY09121.1" /db_xref="Phytozome:POPTR_0006s04670.1" /db_xref="TAIR:AT3G57270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M2M0" /translation="MWGIEGGEIIKSQLQFHVPKYYYNFPLVTRFHSSSMGKSCLVNK CSIMHSTMLLLGLLLAILKPTGAEVGVCYGMMAKNLPPSAEVIALFQQKNIQRMRLYG PDEAALQALGGTNIKLLLDVPNDHLERVAASQGNADQWVQDNVKKYSNVNFQYLAVGN EVKPSDSFAQFLFPAMQNIRNAIVGAGLGNQIKVSTATFFGALKVSFPPSNGNFHPEY QQLLAPVINFLRDNQAPLLVNTYTYFSHIENPGQVSLDYALFTSPSIVVTDGPLQYQN LFDAMLDAFYSALEKNGGGSLDIVVSESGWPSDGGPATSVDNARTYNTNLVRHVNEGT PKKRGKPIDTYLFAMFDENGKEPEYEKHWGLFFPNKQEKYPISFN" mobile_element complement(26231103..26231544) /note="source:CACAO_M_E22854_F86_scaffold_3 2470 2912" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26231645..26234506) /note="source:CACAO_M_S_E88091_F86_scaffold_7 6500 9360" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 26239719..26246177 /locus_tag="TCM_024511" /note="dbxref CacaoGD:Thecc1EG024511" mRNA join(26239719..26239967,26240977..26241052, 26242319..26242593,26246152..26246177) /locus_tag="TCM_024511" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(26239887..26239967,26240977..26241052, 26242319..26242527) /locus_tag="TCM_024511" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09122.1" /translation="MAKDDANNENGKSTKELVATMSANQSKLLALLGNHGPSTSNPST NMVASNVSDSSVAKFVQSIDLGWTTKLDIPLNHVVPNVTKLRLNESSTGINLTTSTIG LVSKQQACNRRTHATSCRT" mobile_element 26244754..26247697 /note="source:CACAO_M_E43878_F72_scaffold_5 1 2944" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(26250419..26253936) /locus_tag="TCM_024512" /note="dbxref CacaoGD:Thecc1EG024512" mRNA complement(join(26250419..26250776,26250873..26251007, 26251681..26251828,26253803..26253936)) /locus_tag="TCM_024512" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS complement(join(26250579..26250776,26250873..26251007, 26251681..26251749)) /locus_tag="TCM_024512" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09123.1" /translation="MVCVVDQSASTQEIRETKGVTKQISNLNEKEPLFAFMDGLKPWA KQELQRRDVRDLMQAIVVTKSLIETWAIAMCKKHVAIMMEKEGASNESDNYCVKRPNE RSQLESLVLHKEDKTYQTTYIVREKSQYNGK" mobile_element complement(26252354..26253286) /note="source:INTACT85_F9_scaffold_4-int 500 1411" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26256882..26257386) /note="source:scaffold_1_CACTA_0028 11502 12093" /mobile_element_type="transposon:TIR/CACTA" mobile_element 26257401..26260506 /note="source:CACAO_M_S_E66272_F15_scaffold_5 1 3106" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26260507..26260682) /note="source:scaffold_1_CACTA_0028 11797 11967" /mobile_element_type="transposon:TIR/CACTA" mobile_element 26261252..26262062 /note="source:CACAO_M_S_E17060_F3_scaffold_3 3037 3885" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26261425..26264568) /note="source:CACAO_M_E53114_F328_scaffold_8 1 3178" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(26267724..26269539) /locus_tag="TCM_024514" /note="dbxref CacaoGD:Thecc1EG024514" mRNA complement(join(26267724..26268831,26269182..26269539)) /locus_tag="TCM_024514" /product="Glucan endo-1,3-beta-glucosidase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s05780.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024509t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s04670.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09706t00001" CDS complement(join(26267879..26268831,26269182..26269341)) /locus_tag="TCM_024514" /note="paralog of Thecc1EG024509t1" /codon_start=1 /product="Glucan endo-1,3-beta-glucosidase" /protein_id="EOY09124.1" /db_xref="Phytozome:POPTR_0006s04670.1" /db_xref="TAIR:AT3G57240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P36401" /translation="MLAVECRPLFDFSFPLFPLSITTMGKSYLAGNFGFMASTMLLFG LLVASLRTTSAQVGVCYGMLGNNLPPRPEVIALFNQRNIRRMRLYGPDKPALEALRGS NIELMLGVPNDKLEGLAANQANANAWVQDNVRNYGNVKFRYIAVGNEVKPSDPAARFV VPAMQNIRNAIVGAGLGNQIKVSTAIDTVTLGESFPPSKGSFRPDYRPLLDPIIRFLV NNKAPLLVNLYPYFSYDDNSDIRLDYALFKAQNPVVSDPPLQYRNLFDAILDAVYAAL EKAGGGSLEIVVSESGWPSAGGRKRGATNIDNARTYNQNLIQHVKGGTPKKPGKPIEA YIFAMFDENNKQGEEIERHWGLFLPNKQPKYPINFN" mobile_element complement(26269049..26269120) /note="source:CACAO_M_E22186_F143_scaffold_3 9967 10039" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26278127..26279817 /note="source:CACAO_M_S_E119191_F3_scaffold_9 1 1688" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(26279825..26282984) /locus_tag="TCM_024515" /note="dbxref CacaoGD:Thecc1EG024515" mRNA complement(join(26279825..26279855,26281498..26281802, 26281951..26282750,26282808..26282984)) /locus_tag="TCM_024515" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022649t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.34 coverage" CDS complement(join(26281518..26281802,26281951..26282223)) /locus_tag="TCM_024515" /note="paralog of Thecc1EG022649t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09125.1" /translation="MLVVQEFYANSIKHEDGRAYVRGCQVFFDADTINQFYNTLDIRN DEYSQLVNGDIDLDEVLGSINILGTEWKVHKGVPISFKVNAMDSVYKSGRHVVGLWYP YLIIALCHQARVVWSTNEKLLHPKIPLDGGIINRFYMQEKPTIGGSSSVTPQPLQHSQ NLSMLQQMERLEHCSPHCPHCPLKR" mobile_element complement(26283252..26283397) /note="source:CACAO_M_E36185_F9_scaffold_5 6917 7050" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26287310..26291268 /note="source:CACAO_M_E43879_F10_scaffold_5 1 3959" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(26287681..26291174) /locus_tag="TCM_024518" /note="dbxref CacaoGD:Thecc1EG024518" mRNA complement(join(26287681..26287831,26288114..26288796, 26289934..26291174)) /locus_tag="TCM_024518" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:frave:gene25632.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014797t1" /inference="similar to AA sequence:frave:gene29757" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.40 coverage" CDS complement(join(26288795..26288796,26289934..26290765)) /locus_tag="TCM_024518" /note="dbxref frave:gene29757; paralog of Thecc1EG014797t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09126.1" /translation="MATSSTKYEIEKFNGRNDFSLWRVKMCALLVQQGLLKALKGKEH LPSNLSDSEKDDLMEKAHSAILLTLSDEVLREVTDEESAAAMWFKLESIYITKSLTNR LYMKQRLYTLKMSEGTSVNTHIDEFNRVILDLKNIDVKIEDEDLALILLCYLPPSYEN FVDTMLYGRDTLTFEDVRAYLNSKELKKKVGGIRNENQAEGLVVNRGRGKEKGLDKKG KSRAKGKTCWNCGQKGHFRQDCTKFKDDEKFNKSENTANVVGDDFDTFEETDNVLAIT N" gene 26291835..26294644 /locus_tag="TCM_024520" /note="dbxref CacaoGD:Thecc1EG024520" mRNA join(26291835..26292156,26293333..26293425, 26293587..26294644) /locus_tag="TCM_024520" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018596t1" /note="quality class is weak-utrpoor, express is none, homology is paralog medium, intron is none, protein is utrpoor_complete" CDS join(26291868..26292156,26293333..26293425, 26293587..26293672) /locus_tag="TCM_024520" /note="paralog of Thecc1EG018596t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09127.1" /translation="MHICVIHTEIFTENGFHCLNSHYRLITCLIIWMKKEYSVGLLAF EITGGLARSGGLLGFVFRRNPTSVLFGGALLALCTFCLKIWRQGKSSVPGQAALAAVL FWKGFQTYSLLLITSVHIIYFFLCKAVQCCASTPTLPQRSCDCLPVTNHDETA" mobile_element 26298658..26298734 /note="source:INTACT1332F_F13_scaffold_8-int 14687 14765" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26301382..26301469 /note="source:INTACT296_F13_scaffold_9-int 13167 13248" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26307614..26307710 /note="source:scaffold_8_CACTA_0859 15826 15922" /mobile_element_type="transposon:TIR/CACTA" gene 26317967..26325018 /locus_tag="TCM_024521" /note="dbxref CacaoGD:Thecc1EG024521" mRNA join(26317967..26318681,26318938..26319065, 26319171..26319428,26319522..26319784,26319872..26321043, 26323014..26323099,26323289..26323414,26324817..26325018) /locus_tag="TCM_024521" /product="Cytokinin oxidase/dehydrogenase 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01005041001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042367t1" /inference="similar to AA sequence:Phytozome:GSVIVT01005041001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc879t4; alternateUTRof:Thecc1EG024521t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc879t10" mRNA join(26317967..26318681,26318938..26319065, 26319171..26319428,26319522..26319784,26319872..26321604) /locus_tag="TCM_024521" /product="Cytokinin oxidase/dehydrogenase 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01005041001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042367t1" /inference="similar to AA sequence:Phytozome:GSVIVT01005041001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc879t10; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc879t10" CDS join(26318018..26318681,26318938..26319065, 26319171..26319428,26319522..26319784,26319872..26320193) /locus_tag="TCM_024521" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042367t1" /codon_start=1 /product="Cytokinin oxidase/dehydrogenase 1 isoform 1" /protein_id="EOY09128.1" /db_xref="Phytozome:GSVIVT01005041001" /db_xref="TAIR:AT2G41510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22213" /translation="MGSPACGFLKQSNVIFLPFFMILVLSCIPGRTNLCSNHSLDTPT IPPHSGSSSIPLSLKSLALDGYFRFENIDHAAKDFGNIYHYLPIAVLHPKSVSDISST IKHIFHMASVTKLAVAAKGRGHSLQGQAQAYQGVVINMESLERPSMHVQTGEVPYVDV SGGELWINILQETLKYGLSPKSWTDYLHLTVGGTLSNAGISGQAFRHGPQINNVYQLE VVTGKGEVLTCSDKQNADLFYGVLGGLGQFGIITRARISLAPARTMVKWIRVLYSEFS AFSNDQEHLISSENTFDYVEGFVIINRTGLLHNWRSSFNPKNPIQASQFRSDGKILYC LEMVKYFNPEETDILKSIENLLSELNYIPSTLFLSEVSYVEFLDRVHLSEIKLRSKGL WEVPHPWLNLLIPKSRIFDFTQEVFGNIVKDNSNGPILIYPVNKAKWNNRTSMVTPEE DIIYLVAFLSSALPSSTGTDGLEHIMTQNQRILDFCAEAQLGAKQYLPHYSTQDEWQA HFGPQWETFVQRKSAYDPLAILAPGQKIFQKAIPIS" CDS join(26318018..26318681,26318938..26319065, 26319171..26319428,26319522..26319784,26319872..26320193) /locus_tag="TCM_024521" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042367t1" /codon_start=1 /product="Cytokinin oxidase/dehydrogenase 1 isoform 1" /protein_id="EOY09129.1" /db_xref="Phytozome:GSVIVT01005041001" /db_xref="TAIR:AT2G41510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22213" /translation="MGSPACGFLKQSNVIFLPFFMILVLSCIPGRTNLCSNHSLDTPT IPPHSGSSSIPLSLKSLALDGYFRFENIDHAAKDFGNIYHYLPIAVLHPKSVSDISST IKHIFHMASVTKLAVAAKGRGHSLQGQAQAYQGVVINMESLERPSMHVQTGEVPYVDV SGGELWINILQETLKYGLSPKSWTDYLHLTVGGTLSNAGISGQAFRHGPQINNVYQLE VVTGKGEVLTCSDKQNADLFYGVLGGLGQFGIITRARISLAPARTMVKWIRVLYSEFS AFSNDQEHLISSENTFDYVEGFVIINRTGLLHNWRSSFNPKNPIQASQFRSDGKILYC LEMVKYFNPEETDILKSIENLLSELNYIPSTLFLSEVSYVEFLDRVHLSEIKLRSKGL WEVPHPWLNLLIPKSRIFDFTQEVFGNIVKDNSNGPILIYPVNKAKWNNRTSMVTPEE DIIYLVAFLSSALPSSTGTDGLEHIMTQNQRILDFCAEAQLGAKQYLPHYSTQDEWQA HFGPQWETFVQRKSAYDPLAILAPGQKIFQKAIPIS" gene complement(26320587..26324900) /locus_tag="TCM_024522" /note="dbxref CacaoGD:Thecc1EG024522" mRNA complement(join(26320587..26321044,26323014..26323100, 26323290..26323414,26324817..26324900)) /locus_tag="TCM_024522" /product="Mediator of RNA polymerase II transcription subunit 23" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g28920.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s04640.2" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaL_g04594t00001" CDS complement(join(26320659..26321044,26323014..26323044)) /locus_tag="TCM_024522" /codon_start=1 /product="Mediator of RNA polymerase II transcription subunit 23" /protein_id="EOY09130.1" /db_xref="Phytozome:POPTR_0006s04640.2" /db_xref="TAIR:AT5G04000.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9J5" /translation="MEHKSIEVSHEKDKDRTRNEATEFTSEVSVEDASKALPSSPIND VQVHTVAWKGGGIDEETLQNVETPGEVNMEVSVTAEDVIQAGGFGARDDISSFLPVAS DWTDFEASIRDARDYEEPQGEVHRPGLGWREASERE" gene 26328112..26338995 /locus_tag="TCM_024524" /note="dbxref CacaoGD:Thecc1EG024524" mRNA join(26328112..26328583,26328724..26331039, 26331183..26331422,26331873..26332002,26332239..26332391, 26332543..26332781,26332896..26332965,26333773..26333979, 26335917..26336152,26336713..26336791,26336880..26337020, 26337758..26338056,26338132..26338995) /locus_tag="TCM_024524" /product="Heat shock protein DnaJ with tetratricopeptide repeat, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s04320.1" /inference="similar to AA sequence:Phytozome:GSVIVT01005044001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1092t4; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1092t4" mRNA join(26328112..26331039,26331183..26331422, 26331873..26332002,26332239..26332391,26332543..26332782, 26333052..26333687,26333771..26333979,26335917..26336153, 26337016..26337781) /locus_tag="TCM_024524" /product="Heat shock protein DnaJ with tetratricopeptide repeat, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s04320.1" /inference="similar to AA sequence:Phytozome:GSVIVT01005044001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1136t4; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1092t4; inference alignment:Newbler:10:TSA:cgbaL_g09145t00001" mRNA join(26328112..26331039,26331183..26331422, 26331873..26332002,26332239..26332391,26332543..26332781, 26332896..26332965,26333773..26333979,26335917..26336153, 26337016..26337781) /locus_tag="TCM_024524" /product="Heat shock protein DnaJ with tetratricopeptide repeat, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s04320.1" /inference="similar to AA sequence:Phytozome:GSVIVT01005044001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1136t8; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1092t4; inference alignment:Newbler:10:TSA:cgbaL_g09145t00001" CDS join(26328239..26331039,26331183..26331422, 26331873..26332002,26332239..26332391,26332543..26332781, 26332896..26332965,26333773..26333979,26335917..26336153, 26337016..26337048) /locus_tag="TCM_024524" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Heat shock protein DnaJ with tetratricopeptide repeat, putative isoform 2" /protein_id="EOY09132.1" /db_xref="Phytozome:GSVIVT01005044001" /db_xref="TAIR:AT2G41520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9J4" /translation="MSPAAVEIRSPDTFSAKAKPSSTSQSPNSNPDFTAFPQTDHSQM NSSSFGNAGEFDCGFSFASWNGHHPKSAASVRPRPRLVKIRKQLNGKVRTGQSEVGSG FNPFRQASQDSGRVSSCANLSSSGFLKSLNRANNDSNNNNSNNSINNFSFLFGGTDGC DRESTGNVEVENGNEEPAREFENENVGFVFDANLRGGMEKLGSYKCGKFGFVFGANGS DEGVKPNSGKGETSDFRVTLDGRGAKMKVETGAQGSKDCNLEFTFGTTKSHLASNFDS EKGKFGETLKEPDFNGVGFVFGSSQSDLKSTSNADKIESTIFLGGSSSVFGANHLNSS SDFNLERRESCKNFGQSVSGDLGKMNIKGEAESQKMESTTVNFNAKGNESLNEDSDNG FFVFGATSIKGSCSNECKDGIYSTSETFGVSASNGWCKDVSENSKNIGSSSNANSIYT LQHDLKKLYISCHKKVGGSDTTEDSDTNVTSETIFVFSSSEKASGPSKKAPESGPSAA VERTVEDNSNNGNVNGAVSCNSCNEDNVGISGSKPSKFKASIVKTSEIEKSYQGHVKD DVEMNGTDAWSSLDPNSKGNSGVFEATSTVGIERNDGSCSTGTPDQSGISFSDFKTPQ WDPSSFKANLFPEVDRKLEFGEKSGLTKEKKLKKMRGKLKKSCLHKHCSKQHHVPKES TSQENQDSSQCYSPMDFSPYQENTAADQSSKETPQASEEASPLEYNFIPSTLHSSTLT ECPATAQEGSDCNEGDQKCCEPDEESFGYDHERIIVGDGPSKESVCEAETASTTFKSD WSCSSSAPSVGEAEGIKGTPVNNHTTRSCFNSGLEGKKNFTFSATSTSGQGSLSFRKR QLRKKSKVKIGNASFIITPSPDVKGGCSSVQFSSSEPAQCQQKDKSTYHSEEENEQFK PRSNSSTAAVHEACEMWRLRGNQAYRSDNLSKAEEFYTQGINCVPSNETSRCSIKPLV LCYSNRAATRISLGRMREALADCLMATALDPNFLKVYVRAANCHLLLGETDIAIQYFS KCLGSGAGVCLDRRITIDAADGLQKAQRVDELTDRSAILLEQKSSDAASSALDTIAEA LSISSYSEKLLEMKAEALCMLKKYEEAIQLCEQSLYVAEKNFSKGETDNQLASIDGSG CYSIAMLWRWHLMSKSYFYMGKLEKALDLLQQLEQVGSVKDKHGSKILEMSVTLAVTI RELLRLKNAGNEAVRSGRCTEAAEHYTIALSINVESRPFAAICFCNRAAAHQALGQIA DAIADCSLAMALNENYTKAVSRRATLHGMIRDYGQASSDLQRLISTLEKQSDKTSHQS GGQDRTTGNTKELRQAQCQLSSMQEEAKRGIPLDLYLILLRFAIHQIET" CDS join(26328239..26331039,26331183..26331422, 26331873..26332002,26332239..26332391,26332543..26332782, 26333052..26333369) /locus_tag="TCM_024524" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Heat shock protein DnaJ with tetratricopeptide repeat, putative isoform 3" /protein_id="EOY09133.1" /db_xref="Phytozome:GSVIVT01005044001" /translation="MSPAAVEIRSPDTFSAKAKPSSTSQSPNSNPDFTAFPQTDHSQM NSSSFGNAGEFDCGFSFASWNGHHPKSAASVRPRPRLVKIRKQLNGKVRTGQSEVGSG FNPFRQASQDSGRVSSCANLSSSGFLKSLNRANNDSNNNNSNNSINNFSFLFGGTDGC DRESTGNVEVENGNEEPAREFENENVGFVFDANLRGGMEKLGSYKCGKFGFVFGANGS DEGVKPNSGKGETSDFRVTLDGRGAKMKVETGAQGSKDCNLEFTFGTTKSHLASNFDS EKGKFGETLKEPDFNGVGFVFGSSQSDLKSTSNADKIESTIFLGGSSSVFGANHLNSS SDFNLERRESCKNFGQSVSGDLGKMNIKGEAESQKMESTTVNFNAKGNESLNEDSDNG FFVFGATSIKGSCSNECKDGIYSTSETFGVSASNGWCKDVSENSKNIGSSSNANSIYT LQHDLKKLYISCHKKVGGSDTTEDSDTNVTSETIFVFSSSEKASGPSKKAPESGPSAA VERTVEDNSNNGNVNGAVSCNSCNEDNVGISGSKPSKFKASIVKTSEIEKSYQGHVKD DVEMNGTDAWSSLDPNSKGNSGVFEATSTVGIERNDGSCSTGTPDQSGISFSDFKTPQ WDPSSFKANLFPEVDRKLEFGEKSGLTKEKKLKKMRGKLKKSCLHKHCSKQHHVPKES TSQENQDSSQCYSPMDFSPYQENTAADQSSKETPQASEEASPLEYNFIPSTLHSSTLT ECPATAQEGSDCNEGDQKCCEPDEESFGYDHERIIVGDGPSKESVCEAETASTTFKSD WSCSSSAPSVGEAEGIKGTPVNNHTTRSCFNSGLEGKKNFTFSATSTSGQGSLSFRKR QLRKKSKVKIGNASFIITPSPDVKGGCSSVQFSSSEPAQCQQKDKSTYHSEEENEQFK PRSNSSTAAVHEACEMWRLRGNQAYRSDNLSKAEEFYTQGINCVPSNETSRCSIKPLV LCYSNRAATRISLGRMREALADCLMATALDPNFLKVYVRAANCHLLLGETDIAIQYFS KCLGSGAGVCLDRRITIDAADGLQKAQRVDELTDRSAILLEQKSSDAASSALDTIAEA LSISSYSEKLLEMKAEALCMLKKYEEAIQLCEQSLYVAEKNFSKGETDNQLASIDGSG CYSIAMLWRWHLMSKSYFYMGKLEKALDLLQQLEQVGSVKDKKIKLFHVIFLTLKLGL IGMVPHHAQACGYDTHVLPARDKSSLNSCIAKRRKKHIIFSVLMLFVCLSFLMIDTTE EIEWKCYYTCGLTNIRLWVTYHLSKSLCSFQ" CDS join(26328830..26331039,26331183..26331422, 26331873..26332002,26332239..26332391,26332543..26332781, 26332896..26332965,26333773..26333979,26335917..26336152, 26336713..26336791,26336880..26337020,26337758..26337928) /locus_tag="TCM_024524" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Heat shock protein DnaJ with tetratricopeptide repeat, putative isoform 1" /protein_id="EOY09131.1" /db_xref="Phytozome:GSVIVT01005044001" /db_xref="TAIR:AT2G41520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9J4" /translation="MEKLGSYKCGKFGFVFGANGSDEGVKPNSGKGETSDFRVTLDGR GAKMKVETGAQGSKDCNLEFTFGTTKSHLASNFDSEKGKFGETLKEPDFNGVGFVFGS SQSDLKSTSNADKIESTIFLGGSSSVFGANHLNSSSDFNLERRESCKNFGQSVSGDLG KMNIKGEAESQKMESTTVNFNAKGNESLNEDSDNGFFVFGATSIKGSCSNECKDGIYS TSETFGVSASNGWCKDVSENSKNIGSSSNANSIYTLQHDLKKLYISCHKKVGGSDTTE DSDTNVTSETIFVFSSSEKASGPSKKAPESGPSAAVERTVEDNSNNGNVNGAVSCNSC NEDNVGISGSKPSKFKASIVKTSEIEKSYQGHVKDDVEMNGTDAWSSLDPNSKGNSGV FEATSTVGIERNDGSCSTGTPDQSGISFSDFKTPQWDPSSFKANLFPEVDRKLEFGEK SGLTKEKKLKKMRGKLKKSCLHKHCSKQHHVPKESTSQENQDSSQCYSPMDFSPYQEN TAADQSSKETPQASEEASPLEYNFIPSTLHSSTLTECPATAQEGSDCNEGDQKCCEPD EESFGYDHERIIVGDGPSKESVCEAETASTTFKSDWSCSSSAPSVGEAEGIKGTPVNN HTTRSCFNSGLEGKKNFTFSATSTSGQGSLSFRKRQLRKKSKVKIGNASFIITPSPDV KGGCSSVQFSSSEPAQCQQKDKSTYHSEEENEQFKPRSNSSTAAVHEACEMWRLRGNQ AYRSDNLSKAEEFYTQGINCVPSNETSRCSIKPLVLCYSNRAATRISLGRMREALADC LMATALDPNFLKVYVRAANCHLLLGETDIAIQYFSKCLGSGAGVCLDRRITIDAADGL QKAQRVDELTDRSAILLEQKSSDAASSALDTIAEALSISSYSEKLLEMKAEALCMLKK YEEAIQLCEQSLYVAEKNFSKGETDNQLASIDGSGCYSIAMLWRWHLMSKSYFYMGKL EKALDLLQQLEQVGSVKDKHGSKILEMSVTLAVTIRELLRLKNAGNEAVRSGRCTEAA EHYTIALSINVESRPFAAICFCNRAAAHQALGQIADAIADCSLAMALNENYTKAVSRR ATLHGMIRDYGQASSDLQRLISTLEKQSDKTSHQSGGQDRTTGNTKELRQAQCQLSSM QEEAKRGIPLDLYLILGVKPSDSTSDVKKAYRKAALRHHPDKAGQFLARSESGDEGRL WKEIAEEVHKDADRLFKMIGEAYAILSDTSKRSEYDLEEEIRKAPRESKGSPYERPPD EYDYPYERSSNRRYWRGNWKTYRNSHSRW" gene 26340525..26344510 /locus_tag="TCM_024525" /note="dbxref CacaoGD:Thecc1EG024525" mRNA join(26340525..26340664,26340992..26341203, 26342851..26342957,26343081..26343183,26343548..26343706, 26343789..26343842,26344209..26344510) /locus_tag="TCM_024525" /product="Carbonic anhydrase, putative" /inference="alignment:exonerate- protein:2:ricco:28007.m000174" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024529t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s04300.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5595t1" CDS join(26340562..26340664,26340992..26341203, 26342851..26342957,26343081..26343183,26343548..26343706, 26343789..26343842,26344209..26344292) /locus_tag="TCM_024525" /note="paralog of Thecc1EG024529t1" /codon_start=1 /product="Carbonic anhydrase, putative" /protein_id="EOY09134.1" /db_xref="Phytozome:POPTR_0016s04300.1" /db_xref="TAIR:AT4G20990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T345" /translation="MMCCKKAFAFLIFASLVLSCTSFRPTRIHSQSDEGDEFNYDEGS GRGPSRWGSLKPEWQTCSTGNLQSPIDIPVGSVLLSPALGDLQTSYASSPAVLKNRGH DIAVMWNGDAGKVDINGTDYKILQCHWHSPSEHTFDGTRHDLEIHIVHQNANNQIAVV SMVFQFGQPDPFLSALLSSIKTVGGGEKELGNVNPGDIGFVGRQYFRYTGSLSTPPCT EGVIWTVFQQVKTASTEQVQALKDALTEQFKENSRPTQPLGGRLVSFYEPGETDA" mobile_element 26349694..26351817 /note="source:CACAO_M_E43880_F15_scaffold_5 1 2124" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26352265..26352816 /note="source:CACAO_M_E43880_F15_scaffold_5 2125 2657" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 26353180..26359104 /locus_tag="TCM_024527" /note="dbxref CacaoGD:Thecc1EG024527" mRNA join(26353180..26353387,26355578..26359104) /locus_tag="TCM_024527" /product="Plastid movement impaired1" /inference="alignment:exonerate- protein:2:ricco:30170.m013800" /inference="similar to AA sequence:ricco:30170.m013800" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaL_g15550t00001" gene complement(26355158..26355639) /locus_tag="TCM_024528" /note="dbxref CacaoGD:Thecc1EG024528" mRNA complement(26355158..26355639) /locus_tag="TCM_024528" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.59 coverage" CDS complement(26355267..26355587) /locus_tag="TCM_024528" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09136.1" /translation="MKFPAICKALTIKYQQPSNSQTILLALKQKLESWGYVFLPTVRG DCYGGIVAKRKEGEIRVRHNKFPKSLWFEKPCGAESGFHSMPPTPAPGVSHLYLTNQD VALL" CDS 26356070..26358655 /locus_tag="TCM_024527" /note="dbxref ricco:30170.m013800" /codon_start=1 /product="Plastid movement impaired1" /protein_id="EOY09135.1" /db_xref="TAIR:AT1G42550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C8E6" /translation="MAKEYAAGRRNSNTQLLEELEALSQSLYQSHTSATRRTASLALP RTSVPSVSSTDEATEAQFEAKSSTKPRSRRMSLSPWRSRPKPDDEADQKDQARRSNQP NRLKEQAASKEKKGIWNWKPIRVLSHLGMQKLSCLLSVEVVTAQGLPASMNGLRLSVC VRKKETKDGAVNTMPSRVSQGAADFEETLFIRCHVYCTQGNGKQLKFEPRPFLIYLFA VDADELDFGRNSVDLSLLIQESVEKSYEGTRVRRWDMTFNLSGKAKGGELIVKLGIQI MEKDGGIGIYNQAEGLKSSKSKNFSSSFARKQSKTSFSVPSPRMTSRSDAWTPSQTGM TADLQGLDDLNLDEPAPASSSVAIEKSEEPEKMEDVDLPDFEVVDKGVEIQEKEAGVA ESEETGEDKSASSEVVKEIVHDQLHMTRLTELDSIAQQIKALESMMGEEKIAKTDEET ESQRLDADEETVTREFLQMLEDEGSNELKLNQTDIPPLQLDRAEDSSESDSKIYLPDL GNGLGCVVQTRDGGYLASMNPSDSLVARKDTPKLAMQMSKPMVLPSDKSMSGFEVFQK MAAVGLEKLSSQILSLMPQDELMGKTAEQIAFEGIASAIIQGRNKEGASSSAARTIAA VKSMANAMSTGRKERIATGIWNVNENPLTAEEILAFSLQKIEGMAVEALKVQAEMVEE EAPFDVSALIGKTATDNGKDQDQTLVSAIPLENWIKNYSSISSEAELGDPETLTLAVV VQLRDPLRRYEAVGGPVLALIQASRADIKTNKYDEEKRFKVTSLHVGGLKVRTAGKRN IWDTERHRLTAMQWLVAYGLGKSGRKGKHVLSKGQDMFWSISSRVMADMWLKTMRNPD VKFAK" gene 26363282..26367948 /locus_tag="TCM_024529" /note="dbxref CacaoGD:Thecc1EG024529" mRNA join(26363282..26363418,26365167..26365384, 26365692..26365798,26365981..26366083,26366803..26366961, 26367076..26367129,26367492..26367948) /locus_tag="TCM_024529" /product="Alpha carbonic anhydrase 4, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s04300.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024525t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s04300.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2759t1" CDS join(26363310..26363418,26365167..26365384, 26365692..26365798,26365981..26366083,26366803..26366961, 26367076..26367129,26367492..26367581) /locus_tag="TCM_024529" /note="paralog of Thecc1EG024525t1" /codon_start=1 /product="Alpha carbonic anhydrase 4, putative" /protein_id="EOY09137.1" /db_xref="Phytozome:POPTR_0016s04300.1" /db_xref="TAIR:AT4G20990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JIK2" /translation="MKGKCFGRCEPPTFAILCISSLCYLLPICFASYAEVGNEIPFTY TEGTGKGPKEWGHINPHWKLCDTGKLQSPIDLLSEKVQVLPKLGKLKRDYKPAPAVVK NRGHDITVRWEGDAGKININGTDYKLLQCHWHSPSEHTFNGTRHELELHIVHLSAHGE IAVVAIVFKYGRPDRFLARLFHHIKTMGNEEKNLGMVNPGDIKFGSRKYYRYIGSLTV PPCTEGVVWTIVKKVRTATREQVRALRDAVHDGFEANARPTQRLDERPVLFYAPRMNG GSA" mobile_element 26372618..26375954 /note="source:CACAO_M_E43881_F82_scaffold_5 1 3337" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26381149..26381164 /note="source:scaffold_4_CACTA_0500 1958 1972" /mobile_element_type="transposon:TIR/CACTA" mobile_element 26381165..26383732 /note="source:CACAO_M_E44110_F323_scaffold_5 1 2565" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26383833..26384694 /note="source:CACAO_M_E84908_F12_scaffold_10 8727 9584" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26389982..26390743) /note="source:CACAO_M_E34392_F323_scaffold_5 383 1143" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26390844..26391218 /note="source:CACAO_M_E11165_F323_scaffold_2 2511 2883" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26394183..26394231 /note="source:CACAO_M_S_E122136_F76_scaffold_10 13663 13711" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26401052..26401244 /note="source:CACAO_M_E42514_F40_scaffold_5 3343 3528" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 26402649..26405831 /note="source:CACAO_M_E43889_F328_scaffold_5 1 3183" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(26408681..26414191) /locus_tag="TCM_024532" /note="dbxref CacaoGD:Thecc1EG024532" mRNA complement(join(26408681..26408802,26410148..26410267, 26411254..26411338,26411417..26411675,26414110..26414191)) /locus_tag="TCM_024532" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038926t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(26408756..26408802,26410148..26410267, 26411254..26411338,26411417..26411602)) /locus_tag="TCM_024532" /note="paralog of Thecc1EG038926t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09138.1" /translation="MESEKAMRMDQMDKVQQEMKEQLAKMMELIMNISKGKTVVEELA NQASQQTSSNNNSTYQPPGTTFGVNPVNPIKVPNLDDTREQEKLNKAPVHFNSLKPLY PKWYDANAHCDYHYGIQGHSTENCTAQKYSYIHLGKILNSSSE" mobile_element complement(26409842..26409895) /note="source:INTACT444_F216_scaffold_4-int 12336 12386" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 26414286..26421756 /locus_tag="TCM_024533" /note="dbxref CacaoGD:Thecc1EG024533" mRNA join(26414286..26414288,26417566..26417617, 26417774..26417931,26418390..26418801,26421734..26421756) /locus_tag="TCM_024533" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" mobile_element 26416022..26416167 /note="source:scaffold_4_CACTA_0500 11420 11557" /mobile_element_type="transposon:TIR/CACTA" mobile_element 26416188..26416408 /note="source:scaffold_4_CACTA_0500 11349 11568" /mobile_element_type="transposon:TIR/CACTA" CDS join(26417611..26417617,26417774..26417931, 26418390..26418635) /locus_tag="TCM_024533" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09139.1" /translation="MHVELDLLLNSLPSICLTRLDEPYWAISPSGKFTVTSAYEMLRG VLPLNEGVNSGVVLVRLSSDGEEVLIGLCSPPEGWITLNFDGAYRRFIGQVIASGVLR DLYDEWCGGYATCFGVYTAYQAELWGVYKGLPLA" mobile_element 26419975..26420026 /note="source:CACAO_M_S_E122136_F76_scaffold_10 13663 13716" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(26421760..26438401) /locus_tag="TCM_024534" /note="dbxref CacaoGD:Thecc1EG024534" mRNA complement(join(26421760..26422108,26426527..26427184, 26433184..26433389,26438351..26438401)) /locus_tag="TCM_024534" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" mobile_element 26424805..26426396 /note="source:CACAO_M_E43890_F17_scaffold_5 1 1592" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(26426721..26427050) /locus_tag="TCM_024534" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09140.1" /translation="MVERVSKENGSISKVDIKKRNLVIVRKVEEIWELNKILGLNFVE DKDEVIQKIVELEVVDIEGRSQLGHAHQYRQSRARDERGQLFFARLGCHWLMCNKFSC VIIGNFG" mobile_element 26427233..26428290 /note="source:CACAO_M_S_E89656_F313_scaffold_8 1 1162" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26428279..26428293) /note="source:CACAO_M_E58819_F24_scaffold_9 16270 16281" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26428294..26430994 /note="source:INTACT720_F313_scaffold_4-int 1 2581" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26430985..26432730 /note="source:INTACT720_F313_scaffold_4-int 2830 4571" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26432734..26434437 /note="source:INTACT720_F313_scaffold_4-int 1170 2796" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26434431..26435979 /note="source:CACAO_M_S_E89656_F313_scaffold_8 1017 2566" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26435970..26436178 /note="source:INTACT720_F313_scaffold_4-int 3252 3456" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26436147..26437671 /note="source:INTACT720_F313_scaffold_4-int 916 2581" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26437662..26437854 /note="source:INTACT720_F313_scaffold_4-int 3252 3444" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26437849..26439440 /note="source:CACAO_M_S_E89656_F313_scaffold_8 923 2600" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26439432..26439466 /note="source:INTACT720_F313_scaffold_4-int 3413 3447" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 26444161..26448695 /locus_tag="TCM_024536" /note="dbxref CacaoGD:Thecc1EG024536" mRNA join(26444161..26444350,26446431..26446636, 26447330..26447436,26447562..26447664,26447804..26447965, 26448057..26448110,26448394..26448695) /locus_tag="TCM_024536" /product="Carbonic anhydrase, putative" /inference="alignment:exonerate- protein:2:Phytozome:Sb02g026470.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024525t1" /inference="similar to AA sequence:Phytozome:GSVIVT01005048001" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g13989t1" CDS join(26444251..26444350,26446431..26446636, 26447330..26447436,26447562..26447664,26447804..26447965, 26448057..26448110,26448394..26448498) /locus_tag="TCM_024536" /note="paralog of Thecc1EG024525t1" /codon_start=1 /product="Carbonic anhydrase, putative" /protein_id="EOY09141.1" /db_xref="Phytozome:GSVIVT01005048001" /db_xref="TAIR:AT1G08080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T345" /translation="MKNCNNSYWKPAFSFFLLSCLVLSVSACSQSEEGHEFNYDEASG RGPSRWGLLKPEWRNCSDGRMQSPIDIGTVQPRPQLGDLQRNYTSAPAVLENRVVDVA VVWRGNAGNITINGTVYYVVNCHWHSPSEHTFNRTRFALELHLVHQSAQNLTAVVAIL YQLGAADPFIARLRPFITTLENVERVPLGPIDPESIGLPGRKYYRYNGSLTTPPCSEG VLWTVFPQIKTVSRSQVEALRNVLPPENRNNSRPTQPLNNRTVLLYDPARMGTFTLKT DD" gene 26451687..26456967 /locus_tag="TCM_024537" /note="dbxref CacaoGD:Thecc1EG024537" mRNA join(26451687..26452427,26456672..26456967) /locus_tag="TCM_024537" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008166t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s07920.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.23 coverage" CDS 26452024..26452341 /locus_tag="TCM_024537" /note="paralog of Thecc1EG008166t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09142.1" /db_xref="Phytozome:POPTR_0015s07920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BMD4" /translation="MEDVCLLDSATTHTILCGKHFLSNVTLSKANVYTISGPVGIIDG SENATIVLPNGTTLHIKDALLSSRSKRNLLSFKYVRHNGYHLETIYEQNKECLCITSY KTS" gene complement(26453314..26462213) /locus_tag="TCM_024538" /note="dbxref CacaoGD:Thecc1EG024538" mRNA complement(join(26453314..26453427,26458022..26458696, 26458795..26458813,26458928..26459103,26459187..26459233, 26460200..26460944,26461727..26462213)) /locus_tag="TCM_024538" /product="EF hand family protein, expressed isoform 1" /inference="alignment:exonerate- protein:2:ricco:27687.m000067" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041400t1" /inference="similar to AA sequence:ricco:27687.m000067" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g09567t00001" gene complement(26456106..26457057) /locus_tag="TCM_024539" /note="dbxref CacaoGD:Thecc1EG024539" mRNA complement(26456106..26457057) /locus_tag="TCM_024539" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038020t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.85 coverage" CDS complement(26456765..26456968) /locus_tag="TCM_024539" /note="paralog of Thecc1EG038020t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09145.1" /translation="MASSTYIATASPIFNGENYPICAVNIKTYLKAFDLWEVVEVERE PPVMCHANPTMAQPKQHSEEVAK" mRNA complement(join(26458250..26458696,26458795..26458813, 26458928..26459103,26459187..26459233,26460200..26460902)) /locus_tag="TCM_024538" /product="Calcium-binding EF-hand family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:27687.m000067" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041400t1" /inference="similar to AA sequence:ricco:27687.m000067" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6688t1; alternateUTRof:Thecc1EG024538t1; inference alignment:Newbler:10:TSA:cgbaP2_g09567t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc202t13" CDS complement(join(26458592..26458696,26458795..26458813, 26458928..26459103,26459187..26459233,26460200..26460680)) /locus_tag="TCM_024538" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:27687.m000067; paralog of Thecc1EG041400t1" /codon_start=1 /product="EF hand family protein, expressed isoform 1" /protein_id="EOY09143.1" /db_xref="TAIR:AT3G10300.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2RAR8" /translation="MSGGYPQHPPGYGYGAPPAQPYSAAPYTAGAPPPPQPYGVPYAA APYGAPSAPYGAPPGEKPPKDKQQAHGVGGAPPAYSGSYPPAGGYSSPFAALLPSAFP PGTDPNVVACFQMADQDGSGFIDDKELQRALSSYNQSFSLRTVHLLMYLFTNSNSRKI GPKEFTAVFYSLQNWRAIFEKFDRDRSGKIDANELREALLSLGFSVSPVVLDLLVSKF DKTGGKNKAIEYDNFIECCLTVKGLTEKFREKDTTYSGNATFTYEAFMLTVLPFLIA" CDS complement(join(26458592..26458696,26458795..26458813, 26458928..26459103,26459187..26459233,26460200..26460680)) /locus_tag="TCM_024538" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:27687.m000067; paralog of Thecc1EG041400t1" /codon_start=1 /product="Calcium-binding EF-hand family protein isoform 1" /protein_id="EOY09144.1" /db_xref="TAIR:AT3G10300.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2RAR8" /translation="MSGGYPQHPPGYGYGAPPAQPYSAAPYTAGAPPPPQPYGVPYAA APYGAPSAPYGAPPGEKPPKDKQQAHGVGGAPPAYSGSYPPAGGYSSPFAALLPSAFP PGTDPNVVACFQMADQDGSGFIDDKELQRALSSYNQSFSLRTVHLLMYLFTNSNSRKI GPKEFTAVFYSLQNWRAIFEKFDRDRSGKIDANELREALLSLGFSVSPVVLDLLVSKF DKTGGKNKAIEYDNFIECCLTVKGLTEKFREKDTTYSGNATFTYEAFMLTVLPFLIA" mobile_element 26465255..26465641 /note="source:INTACT642F_F365_scaffold_5-int 5905 6271" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26467187..26469138 /note="source:CACAO_M_S_E144426_F33_scaffold_10 15173 17124" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26469138..26470407 /note="source:CACAO_M_E69395_F15_scaffold_9 1 1263" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26470508..26470989 /note="source:CACAO_M_E56665_F15_scaffold_8 1174 1653" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26471090..26472392 /note="source:CACAO_M_E56665_F15_scaffold_8 1691 2974" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26472393..26473261 /note="source:CACAO_M_E22828_F15_scaffold_3 1962 2832" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26473616..26475112) /note="source:CACAO_M_E9677_F7_scaffold_2 1 1486" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26475167..26477890 /note="source:CACAO_M_E43898_F73_scaffold_5 1 2724" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(26479338..26487930) /locus_tag="TCM_024542" /note="dbxref CacaoGD:Thecc1EG024542" mRNA complement(join(26479338..26479777,26480220..26480310, 26480414..26480535,26485701..26485968,26487400..26487930)) /locus_tag="TCM_024542" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(join(26479528..26479777,26480220..26480310, 26480414..26480535,26485701..26485968,26487400..26487439)) /locus_tag="TCM_024542" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09146.1" /translation="MTNLCLPFVALTCVTYTIEFQKRELPYVHILLWLHHDHKFLLPK DIDRIISAKLLCKHVDPIPYQAMTEFSIHGPCGVSHPNSPNLTKGEVINPIVIFANTT EPSMSPWTLNVRGRTCNHKQHILLDRGVQCSEGYMLRDVVECKTKACFSKREFWLATR LKFNLMMDVSIGQRSCVCDRVVYKLNMLSVVIVIQVPTELKLVANLWMELQTALGNFA YDDYTFYIVNIFVVDCLPGRWIFFLQSLPPDLTKVVAK" mobile_element complement(26487790..26490584) /note="source:INTACT465_F78_scaffold_6-int 4506 7272" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26490475..26490603 /note="source:CACAO_M_S_E52921_F60_scaffold_5 16416 16544" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26500313..26500984 /note="source:INTACT189_F49_scaffold_5-int 17849 18522" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26503222..26503336 /note="source:INTACT189_F49_scaffold_5-int 17710 17818" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26505147..26505452 /note="source:CACAO_M_E52278_F17_scaffold_7 1 299" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26505490..26505893) /note="source:CACAO_on_E279_scaffold_9 8017 8449" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(26505940..26506154) /note="source:CACAO_on_E279_scaffold_9 5 219" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 26506155..26507201 /note="source:CACAO_M_E52278_F17_scaffold_7 11742 12807" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26507201..26507602 /note="source:CACAO_M_E52278_F17_scaffold_7 65 459" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26507603..26511404 /note="source:CACAO_M_E43916_F9_scaffold_5 1 3802" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26513838..26519591 /note="source:CACAO_M_E43916_F9_scaffold_5 3803 9556" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26519692..26524932 /note="source:CACAO_M_E43916_F9_scaffold_5 9557 14797" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26524933..26525997 /note="source:CACAO_M_E52278_F17_scaffold_7 456 1532" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26526194..26526263) /note="source:CACAO_M_E34474_F33_scaffold_5 2889 2981" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26526264..26526494 /note="source:CACAO_M_E52068_F33_scaffold_7 1 231" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26526802..26535008) /note="source:INTACT214_F33_scaffold_8-int 2200 10436" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26536768..26539983 /note="source:CACAO_M_S_E118676_F14_scaffold_9 1 3198" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26539983..26541256) /note="source:INTACT214_F33_scaffold_8-int 512 1785" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26541254..26542116) /note="source:INTACT135F_F90_scaffold_2-int 13016 13997" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 26542137..26544689 /note="source:INTACT414F_F358_scaffold_4-int 1475 3996" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26544684..26544754) /note="source:CACAO_M_E1841_F5_scaffold_1 25738 25804" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26544692..26545432) /note="source:CACAO_Mariner_E229_scaffold_9 513 1263" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 26544877..26545551 /note="source:INTACT563_F255_scaffold_10-int 43 676" /mobile_element_type="retrotransposon:LTR/Copia" gene 26545112..26587275 /locus_tag="TCM_024548" /note="dbxref CacaoGD:Thecc1EG024548" mRNA join(26545112..26545597,26575970..26576588, 26576783..26576870,26577062..26577443,26577591..26578023, 26578116..26578316,26578440..26578550,26579006..26579430, 26579553..26579661,26579780..26579860,26579933..26580105, 26580714..26580839,26581543..26581704,26581789..26581846, 26582057..26582287,26582447..26582593,26582691..26583251, 26583350..26583607,26583703..26583810,26584275..26584369, 26584489..26584645,26584904..26585101,26585209..26585364, 26585802..26586759) /locus_tag="TCM_024548" /product="Chromatin remodeling complex subunit isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s04280.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s04280.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc859t6" mobile_element complement(26546173..26546453) /note="source:CACAO_M_E48452_F5_scaffold_6 13574 13860" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26546467..26547578 /note="source:INTACT88_F12_scaffold_4-int 12227 13329" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26547579..26550167 /note="source:CACAO_M_E42430_F369_scaffold_5 1 2679" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26550168..26550831 /note="source:INTACT88_F12_scaffold_4-int 13325 13988" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26550829..26552085) /note="source:INTACT1820F_F94_scaffold_12-int 4200 5468" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26552086..26558578 /note="source:INTACT47_F12_scaffold_3-int 1 5938" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26553342..26561480) /note="source:INTACT1820F_F94_scaffold_12-int 1 8037" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26561481..26565707) /note="source:INTACT1820F_F94_scaffold_12-int 1 4060" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26565708..26572770 /note="source:CACAO_M_S_E15589_F14_scaffold_2 3221 12947" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA join(26576198..26576588,26576783..26576870, 26577062..26577443,26577591..26578023,26578116..26578316, 26578440..26578550,26579006..26579430,26579553..26579661, 26579780..26579860,26579933..26580105,26580714..26580839, 26581543..26581704,26581789..26581846,26582057..26582287, 26582447..26582593,26582691..26583251,26583350..26583607, 26583703..26583819,26584488..26584645,26584904..26585101, 26585209..26585364,26585802..26586366) /locus_tag="TCM_024548" /product="Chromatin remodeling complex subunit isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s04280.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s04280.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc859t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc859t6" mRNA join(26576198..26576588,26577062..26577443, 26577591..26578023,26578116..26578316,26578440..26578550, 26579006..26579430,26579553..26579661,26579780..26579860, 26579933..26580105,26580714..26580839,26581543..26581704, 26581789..26581846,26582057..26582287,26582447..26582593, 26582691..26583251,26583350..26583607,26583703..26583810, 26584275..26584369,26584489..26584645,26584904..26585101, 26585209..26585364,26585802..26586366) /locus_tag="TCM_024548" /product="Chromatin remodeling complex subunit isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s04280.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s04280.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc859t4; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc859t6" mRNA join(26576231..26576588,26576783..26576870, 26577062..26577443,26577591..26578023,26578116..26578316, 26578440..26578550,26579006..26579430,26579553..26579661, 26579780..26579860,26579933..26580105,26580714..26580839, 26581543..26581704,26581789..26581846,26582057..26582287, 26582447..26582593,26582691..26583251,26583350..26583607, 26583703..26583810,26584275..26584369,26584489..26584645, 26584904..26585096,26585800..26586274) /locus_tag="TCM_024548" /product="Chromatin remodeling complex subunit isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s04280.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s04280.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc395t36; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc859t6" mRNA join(26576385..26576588,26576783..26576870, 26577062..26577443,26577591..26578023,26578116..26578316, 26578440..26578550,26579006..26579430,26579553..26579661, 26579780..26579860,26579933..26580105,26580714..26580839, 26581543..26581704,26581789..26581846,26582057..26582287, 26582447..26582593,26582691..26583251,26583350..26583607, 26583703..26583810,26584275..26584369,26584489..26584645, 26584904..26585101,26585209..26585364,26585802..26587275) /locus_tag="TCM_024548" /product="Chromatin remodeling complex subunit isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s04280.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s04280.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6334t2; alternateUTRof:Thecc1EG024548t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc859t6" CDS join(26576529..26576588,26576783..26576870, 26577062..26577443,26577591..26578023,26578116..26578316, 26578440..26578550,26579006..26579430,26579553..26579661, 26579780..26579860,26579933..26580105,26580714..26580839, 26581543..26581704,26581789..26581846,26582057..26582287, 26582447..26582593,26582691..26583251,26583350..26583607, 26583703..26583810,26584275..26584369,26584489..26584645, 26584904..26585101,26585209..26585364,26585802..26586092) /locus_tag="TCM_024548" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Chromatin remodeling complex subunit isoform 1" /protein_id="EOY09147.1" /db_xref="Phytozome:POPTR_0016s04280.1" /db_xref="TAIR:AT3G57300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IHX1" /translation="MESRRQSKDSLSYSNLFNLESLMNFKVPQPDDDFDYYGNSSQDE SRGSQGGALVNHGNGTMSERELRLAKRKRRGAFNSDEEDEDYQGTRITEERYRSMLGE HIQKYKRRFKDTSVSQAPPRMGIPTQKSNLGGSKMRKLGNEQRAGFYDMETTSEWMND VSPQRLANYHEADLVPKIMYEPAYLDIGEGITYKIPPTYDKLAVSLNLPSFSDVRVEE FYLKGTLDLGSLAAMMDSDKRFGPRSQAGMGEPRPQYESLQARLKALAASNSNQKFSL KVSESALNSSIPEGAAGNIQRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKPKVK KDPSEIEREEMEKIGKVWVNIVRRDIPKHHRIFTTFHRKQLIDSKRFAENCQREVKMK VSKSLKFMRGAAFRTRKLARDMLLFWKRVDKEMAEVRKKEEREAAEALRREQELREQK RTEQRLNFLIQQTELYSHFMQNKANSQPSEALPAGDEEPNDDEEEEDDAGPSGEEDSE EAELKKEALRAAQDAVSKQKKLTSAFDTECLKLRQSAETEMPLEDSSVAGSSNIDLHN PSTMPVTSTVQTPEMFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAF LAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMILRKNINP KRLYRREAGFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSSSSIRWRTLLSFN CRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEH QLNRLHAILKPFMLRRVKKDVISELTRKTEITVHCKLSSRQQAFYQAIKNKISLAELF DSNRGPLNEKKILNLMNIVIQLRKVCNHPELFERNEGSTYLYFGEIPNSLLPPPFGEL EDVHYAGGHNPISYKIPKLLQQEVIQSSETLCSAVARGVYQELFYKYFNVFSKENVYQ SIFRQESSSNGLSVRSGTFGFTHLMNLSPAEVAFLGTGSFMERLMFSISRWDDQFLDG VLDSLMEVLDDDFNSSYLESETVRGVTRMLLMPSRSETNSLRRRFATGPGDDPFEALV VSHQDRLLFNTKLLHSTHTFIPRTRAPPIFAQCPDRNFAYRMTEELHHPWVKRLLIGF ARTSEFNGPRMPDASHSLIQEIDCELPVAQPALQLTYKIFGSCPPIQSFDPAKLLTDS GKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRD MVRDFQLRNDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQT KDVTVYRLICKETVEEKILRRASQKSTVQQLVMTGDLVQGDLLAPEDVVSLLLDDAQL ELKLKEIPLQAKDRIKKKQPTKGIRLDAEGDASLEDLTSTGAEGTGTEPSADPEKAKS SNKKRKSASDRQRNSQKMSEASPMDNDLDDILQDDDFLQSQRPKRPKRPKKSVNKNLE PAITTASASVSVSVSEPVQYPPGHEFGPGGFRTEMVHSNMLT" CDS join(26576529..26576588,26576783..26576870, 26577062..26577443,26577591..26578023,26578116..26578316, 26578440..26578550,26579006..26579430,26579553..26579661, 26579780..26579860,26579933..26580105,26580714..26580839, 26581543..26581704,26581789..26581846,26582057..26582287, 26582447..26582593,26582691..26583251,26583350..26583607, 26583703..26583810,26584275..26584369,26584489..26584645, 26584904..26585101,26585209..26585364,26585802..26586092) /locus_tag="TCM_024548" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Chromatin remodeling complex subunit isoform 1" /protein_id="EOY09148.1" /db_xref="Phytozome:POPTR_0016s04280.1" /db_xref="TAIR:AT3G57300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IHX1" /translation="MESRRQSKDSLSYSNLFNLESLMNFKVPQPDDDFDYYGNSSQDE SRGSQGGALVNHGNGTMSERELRLAKRKRRGAFNSDEEDEDYQGTRITEERYRSMLGE HIQKYKRRFKDTSVSQAPPRMGIPTQKSNLGGSKMRKLGNEQRAGFYDMETTSEWMND VSPQRLANYHEADLVPKIMYEPAYLDIGEGITYKIPPTYDKLAVSLNLPSFSDVRVEE FYLKGTLDLGSLAAMMDSDKRFGPRSQAGMGEPRPQYESLQARLKALAASNSNQKFSL KVSESALNSSIPEGAAGNIQRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKPKVK KDPSEIEREEMEKIGKVWVNIVRRDIPKHHRIFTTFHRKQLIDSKRFAENCQREVKMK VSKSLKFMRGAAFRTRKLARDMLLFWKRVDKEMAEVRKKEEREAAEALRREQELREQK RTEQRLNFLIQQTELYSHFMQNKANSQPSEALPAGDEEPNDDEEEEDDAGPSGEEDSE EAELKKEALRAAQDAVSKQKKLTSAFDTECLKLRQSAETEMPLEDSSVAGSSNIDLHN PSTMPVTSTVQTPEMFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAF LAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMILRKNINP KRLYRREAGFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSSSSIRWRTLLSFN CRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEH QLNRLHAILKPFMLRRVKKDVISELTRKTEITVHCKLSSRQQAFYQAIKNKISLAELF DSNRGPLNEKKILNLMNIVIQLRKVCNHPELFERNEGSTYLYFGEIPNSLLPPPFGEL EDVHYAGGHNPISYKIPKLLQQEVIQSSETLCSAVARGVYQELFYKYFNVFSKENVYQ SIFRQESSSNGLSVRSGTFGFTHLMNLSPAEVAFLGTGSFMERLMFSISRWDDQFLDG VLDSLMEVLDDDFNSSYLESETVRGVTRMLLMPSRSETNSLRRRFATGPGDDPFEALV VSHQDRLLFNTKLLHSTHTFIPRTRAPPIFAQCPDRNFAYRMTEELHHPWVKRLLIGF ARTSEFNGPRMPDASHSLIQEIDCELPVAQPALQLTYKIFGSCPPIQSFDPAKLLTDS GKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRD MVRDFQLRNDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQT KDVTVYRLICKETVEEKILRRASQKSTVQQLVMTGDLVQGDLLAPEDVVSLLLDDAQL ELKLKEIPLQAKDRIKKKQPTKGIRLDAEGDASLEDLTSTGAEGTGTEPSADPEKAKS SNKKRKSASDRQRNSQKMSEASPMDNDLDDILQDDDFLQSQRPKRPKRPKKSVNKNLE PAITTASASVSVSVSEPVQYPPGHEFGPGGFRTEMVHSNMLT" CDS join(26576529..26576588,26576783..26576870, 26577062..26577443,26577591..26578023,26578116..26578316, 26578440..26578550,26579006..26579430,26579553..26579661, 26579780..26579860,26579933..26580105,26580714..26580839, 26581543..26581704,26581789..26581846,26582057..26582287, 26582447..26582593,26582691..26583251,26583350..26583607, 26583703..26583810,26584275..26584369,26584489..26584645, 26584904..26585096,26585800..26586092) /locus_tag="TCM_024548" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Chromatin remodeling complex subunit isoform 5" /protein_id="EOY09151.1" /db_xref="Phytozome:POPTR_0016s04280.1" /db_xref="TAIR:AT3G57300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IHX1" /translation="MESRRQSKDSLSYSNLFNLESLMNFKVPQPDDDFDYYGNSSQDE SRGSQGGALVNHGNGTMSERELRLAKRKRRGAFNSDEEDEDYQGTRITEERYRSMLGE HIQKYKRRFKDTSVSQAPPRMGIPTQKSNLGGSKMRKLGNEQRAGFYDMETTSEWMND VSPQRLANYHEADLVPKIMYEPAYLDIGEGITYKIPPTYDKLAVSLNLPSFSDVRVEE FYLKGTLDLGSLAAMMDSDKRFGPRSQAGMGEPRPQYESLQARLKALAASNSNQKFSL KVSESALNSSIPEGAAGNIQRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKPKVK KDPSEIEREEMEKIGKVWVNIVRRDIPKHHRIFTTFHRKQLIDSKRFAENCQREVKMK VSKSLKFMRGAAFRTRKLARDMLLFWKRVDKEMAEVRKKEEREAAEALRREQELREQK RTEQRLNFLIQQTELYSHFMQNKANSQPSEALPAGDEEPNDDEEEEDDAGPSGEEDSE EAELKKEALRAAQDAVSKQKKLTSAFDTECLKLRQSAETEMPLEDSSVAGSSNIDLHN PSTMPVTSTVQTPEMFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAF LAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMILRKNINP KRLYRREAGFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSSSSIRWRTLLSFN CRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEH QLNRLHAILKPFMLRRVKKDVISELTRKTEITVHCKLSSRQQAFYQAIKNKISLAELF DSNRGPLNEKKILNLMNIVIQLRKVCNHPELFERNEGSTYLYFGEIPNSLLPPPFGEL EDVHYAGGHNPISYKIPKLLQQEVIQSSETLCSAVARGVYQELFYKYFNVFSKENVYQ SIFRQESSSNGLSVRSGTFGFTHLMNLSPAEVAFLGTGSFMERLMFSISRWDDQFLDG VLDSLMEVLDDDFNSSYLESETVRGVTRMLLMPSRSETNSLRRRFATGPGDDPFEALV VSHQDRLLFNTKLLHSTHTFIPRTRAPPIFAQCPDRNFAYRMTEELHHPWVKRLLIGF ARTSEFNGPRMPDASHSLIQEIDCELPVAQPALQLTYKIFGSCPPIQSFDPAKLLTDS GKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRD MVRDFQLRNDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQT KDVTVYRLICKETVEEKILRRASQKSTVQQLVMTGDLVQGDLLAPEDVVSLLLDDAQL ELKLKEIPQRKSASDRQRNSQKMSEASPMDNDLDDILQDDDFLQSQRPKRPKRPKKSV NKNLEPAITTASASVSVSVSEPVQYPPGHEFGPGGFRTEMVHSNMLT" CDS join(26576529..26576588,26576783..26576870, 26577062..26577443,26577591..26578023,26578116..26578316, 26578440..26578550,26579006..26579430,26579553..26579661, 26579780..26579860,26579933..26580105,26580714..26580839, 26581543..26581704,26581789..26581846,26582057..26582287, 26582447..26582593,26582691..26583251,26583350..26583607, 26583703..26583819,26584488..26584514) /locus_tag="TCM_024548" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Chromatin remodeling complex subunit isoform 4" /protein_id="EOY09150.1" /db_xref="Phytozome:POPTR_0016s04280.1" /db_xref="TAIR:AT3G57300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IHX1" /translation="MESRRQSKDSLSYSNLFNLESLMNFKVPQPDDDFDYYGNSSQDE SRGSQGGALVNHGNGTMSERELRLAKRKRRGAFNSDEEDEDYQGTRITEERYRSMLGE HIQKYKRRFKDTSVSQAPPRMGIPTQKSNLGGSKMRKLGNEQRAGFYDMETTSEWMND VSPQRLANYHEADLVPKIMYEPAYLDIGEGITYKIPPTYDKLAVSLNLPSFSDVRVEE FYLKGTLDLGSLAAMMDSDKRFGPRSQAGMGEPRPQYESLQARLKALAASNSNQKFSL KVSESALNSSIPEGAAGNIQRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKPKVK KDPSEIEREEMEKIGKVWVNIVRRDIPKHHRIFTTFHRKQLIDSKRFAENCQREVKMK VSKSLKFMRGAAFRTRKLARDMLLFWKRVDKEMAEVRKKEEREAAEALRREQELREQK RTEQRLNFLIQQTELYSHFMQNKANSQPSEALPAGDEEPNDDEEEEDDAGPSGEEDSE EAELKKEALRAAQDAVSKQKKLTSAFDTECLKLRQSAETEMPLEDSSVAGSSNIDLHN PSTMPVTSTVQTPEMFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAF LAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMILRKNINP KRLYRREAGFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSSSSIRWRTLLSFN CRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEH QLNRLHAILKPFMLRRVKKDVISELTRKTEITVHCKLSSRQQAFYQAIKNKISLAELF DSNRGPLNEKKILNLMNIVIQLRKVCNHPELFERNEGSTYLYFGEIPNSLLPPPFGEL EDVHYAGGHNPISYKIPKLLQQEVIQSSETLCSAVARGVYQELFYKYFNVFSKENVYQ SIFRQESSSNGLSVRSGTFGFTHLMNLSPAEVAFLGTGSFMERLMFSISRWDDQFLDG VLDSLMEVLDDDFNSSYLESETVRGVTRMLLMPSRSETNSLRRRFATGPGDDPFEALV VSHQDRLLFNTKLLHSTHTFIPRTRAPPIFAQCPDRNFAYRMTEELHHPWVKRLLIGF ARTSEFNGPRMPDASHSLIQEIDCELPVAQPALQLTYKIFGSCPPIQSFDPAKLLTDS GKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEVCIGMTFLYSC" CDS join(26577094..26577443,26577591..26578023, 26578116..26578316,26578440..26578550,26579006..26579430, 26579553..26579661,26579780..26579860,26579933..26580105, 26580714..26580839,26581543..26581704,26581789..26581846, 26582057..26582287,26582447..26582593,26582691..26583251, 26583350..26583607,26583703..26583810,26584275..26584369, 26584489..26584645,26584904..26585101,26585209..26585364, 26585802..26586092) /locus_tag="TCM_024548" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Chromatin remodeling complex subunit isoform 3" /protein_id="EOY09149.1" /db_xref="Phytozome:POPTR_0016s04280.1" /db_xref="TAIR:AT3G57300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IHX1" /translation="MSERELRLAKRKRRGAFNSDEEDEDYQGTRITEERYRSMLGEHI QKYKRRFKDTSVSQAPPRMGIPTQKSNLGGSKMRKLGNEQRAGFYDMETTSEWMNDVS PQRLANYHEADLVPKIMYEPAYLDIGEGITYKIPPTYDKLAVSLNLPSFSDVRVEEFY LKGTLDLGSLAAMMDSDKRFGPRSQAGMGEPRPQYESLQARLKALAASNSNQKFSLKV SESALNSSIPEGAAGNIQRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKPKVKKD PSEIEREEMEKIGKVWVNIVRRDIPKHHRIFTTFHRKQLIDSKRFAENCQREVKMKVS KSLKFMRGAAFRTRKLARDMLLFWKRVDKEMAEVRKKEEREAAEALRREQELREQKRT EQRLNFLIQQTELYSHFMQNKANSQPSEALPAGDEEPNDDEEEEDDAGPSGEEDSEEA ELKKEALRAAQDAVSKQKKLTSAFDTECLKLRQSAETEMPLEDSSVAGSSNIDLHNPS TMPVTSTVQTPEMFKGSLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLA HLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERMILRKNINPKR LYRREAGFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSSSSIRWRTLLSFNCR NRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQL NRLHAILKPFMLRRVKKDVISELTRKTEITVHCKLSSRQQAFYQAIKNKISLAELFDS NRGPLNEKKILNLMNIVIQLRKVCNHPELFERNEGSTYLYFGEIPNSLLPPPFGELED VHYAGGHNPISYKIPKLLQQEVIQSSETLCSAVARGVYQELFYKYFNVFSKENVYQSI FRQESSSNGLSVRSGTFGFTHLMNLSPAEVAFLGTGSFMERLMFSISRWDDQFLDGVL DSLMEVLDDDFNSSYLESETVRGVTRMLLMPSRSETNSLRRRFATGPGDDPFEALVVS HQDRLLFNTKLLHSTHTFIPRTRAPPIFAQCPDRNFAYRMTEELHHPWVKRLLIGFAR TSEFNGPRMPDASHSLIQEIDCELPVAQPALQLTYKIFGSCPPIQSFDPAKLLTDSGK LQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMV RDFQLRNDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKD VTVYRLICKETVEEKILRRASQKSTVQQLVMTGDLVQGDLLAPEDVVSLLLDDAQLEL KLKEIPLQAKDRIKKKQPTKGIRLDAEGDASLEDLTSTGAEGTGTEPSADPEKAKSSN KKRKSASDRQRNSQKMSEASPMDNDLDDILQDDDFLQSQRPKRPKRPKKSVNKNLEPA ITTASASVSVSVSEPVQYPPGHEFGPGGFRTEMVHSNMLT" gene complement(26586401..26590490) /locus_tag="TCM_024550" /note="dbxref CacaoGD:Thecc1EG024550" mRNA complement(join(26586401..26586992,26587716..26587781, 26587867..26587965,26588134..26588330,26589075..26589122, 26589559..26589676,26590264..26590490)) /locus_tag="TCM_024550" /product="Esterase d, s-formylglutathione hydrolase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s04560.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033232001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14015t2" CDS complement(join(26586813..26586992,26587716..26587781, 26587867..26587965,26588134..26588330,26589075..26589122, 26589559..26589676,26590264..26590410)) /locus_tag="TCM_024550" /codon_start=1 /product="Esterase d, s-formylglutathione hydrolase" /protein_id="EOY09152.1" /db_xref="Phytozome:GSVIVT01033232001" /db_xref="TAIR:AT2G41530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PFP5" /translation="MEMKPTEIGSSKMFGGYNKRYKHYSPTLGCSMTFYIYLPPSPSP SHKFPILYWLSGLTCTDENFIIKSGAQRAASAEGVALIAPDTSPRGLNVEGEADSWDF GVGAGFYLNATQEKWKNWRMYDYVVKEMPKLLSENFPQLDTSKASISGHSMGGHGALT VYLKNLDKYKSVSAFAPIANPINCPWGQKAFTNYLGNDKAAWEEYDATFLISKFHDVS ATILIDQGEDDKFLHDQLLAHKFEEACRSVNAPILLRLQPGYDHSYFFISTFIDDHIR HHAQALRL" mobile_element 26587248..26587324 /note="source:CACAO_M_E5326_F22_scaffold_2 3403 3468" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26594525..26594775) /note="source:scaffold_9_CACTA_0934 14615 14868" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(26595017..26595153) /note="source:scaffold_9_CACTA_0934 14615 14752" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(26595144..26595785) /note="source:scaffold_9_CACTA_0934 13841 14620" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(26600698..26603807) /note="source:CACAO_M_S_E64684_F306_scaffold_5 3 3109" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26604841..26604851) /note="source:scaffold_9_CACTA_0934 9665 9670" /mobile_element_type="transposon:TIR/CACTA" mobile_element 26604852..26607808 /note="source:CACAO_M_S_E66331_F143_scaffold_5 1 2957" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26611587..26617754 /note="source:CACAO_M_E11488_F17_scaffold_2 1 4654" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26617879..26618891 /note="source:CACAO_M_E11488_F17_scaffold_2 4789 5790" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(26620734..26624364) /locus_tag="TCM_024552" /note="dbxref CacaoGD:Thecc1EG024552" mRNA complement(join(26620734..26620846,26623532..26624364)) /locus_tag="TCM_024552" /product="Cytochrome P450, family 71, subfamily B, polypeptide 10, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032468t1" /inference="similar to AA sequence:ricco:30206.m000783" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(26623623..26623967) /locus_tag="TCM_024552" /note="dbxref ricco:30206.m000783; paralog of Thecc1EG032468t1" /codon_start=1 /product="Cytochrome P450, family 71, subfamily B, polypeptide 10, putative" /protein_id="EOY09153.1" /db_xref="TAIR:AT5G57260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LVD2" /translation="MIESISQSSAYETPINLTQKMMALTIHIIREVALCKSALDKQLG TNKFQELVHEAFSIMGSFFAFDFFPYVGYIIDKTTGLHGRLEKTFRDLDLLYQKVIDD HLHIERHVKLGS" mobile_element 26624380..26625075 /note="source:scaffold_5_CACTA_0596 16459 17168" /mobile_element_type="transposon:TIR/CACTA" mobile_element 26625295..26625561 /note="source:scaffold_5_CACTA_0596 17154 17424" /mobile_element_type="transposon:TIR/CACTA" mobile_element 26634094..26634141 /note="source:scaffold_6_CACTA_0712 8832 8878" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(26634102..26638077) /note="source:scaffold_7_CACTA_0785 8175 12174" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(26640855..26643468) /note="source:scaffold_2_CACTA_0279 1704 4314" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(26643411..26643484) /note="source:CACAO_M_E58230_F143_scaffold_9 1677 1756" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26643804..26644407) /note="source:scaffold_2_CACTA_0279 655 1256" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(26644395..26645070) /note="source:scaffold_7_CACTA_0785 4595 5181" /mobile_element_type="transposon:TIR/CACTA" mobile_element 26644820..26645858 /note="source:scaffold_5_CACTA_0606 8447 9503" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(26648417..26648709) /note="source:scaffold_1_CACTA_0006 1 267" /mobile_element_type="transposon:TIR/CACTA" gene 26652816..26658851 /locus_tag="TCM_024554" /note="dbxref CacaoGD:Thecc1EG024554" mRNA join(26652816..26653146,26654379..26654461, 26654603..26654611,26654703..26654791,26655413..26655486, 26655560..26655610,26656461..26656525,26656704..26657332, 26657920..26657999,26658084..26658851) /locus_tag="TCM_024554" /product="AP2 domain-containing transcription factor isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033273001" /inference="similar to AA sequence:Phytozome:POPTR_0016s05670.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5748t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5748t1" mRNA join(26652816..26653146,26654379..26654461, 26654603..26654611,26654703..26654791,26655413..26655486, 26655560..26655610,26656461..26656525,26656704..26657332, 26658084..26658851) /locus_tag="TCM_024554" /product="AP2 domain-containing transcription factor isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033273001" /inference="similar to AA sequence:Phytozome:POPTR_0016s05670.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5748t2; inference alignment:Newbler:10:TSA:cgbaB_g06409t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5748t1" CDS join(26652935..26653146,26654379..26654461, 26654603..26654611,26654703..26654791,26655413..26655486, 26655560..26655610,26656461..26656525,26656704..26657332, 26658084..26658137) /locus_tag="TCM_024554" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="AP2 domain-containing transcription factor isoform 2" /protein_id="EOY09155.1" /db_xref="Phytozome:POPTR_0016s05670.1" /db_xref="TAIR:AT2G41710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9T5" /translation="MASTSSSDPGMKAEASGGENSETVIANDQLLLYRGLKKAKKERG CTAKERISKMPPCTAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLG AYDDEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREDYLASLRRKSSG FSRGISKYRGLSSSRWDSSFGRVSGSEYFNSMQYSDDPATESDYIGGFCIERKIDLTG CIKWWGTNKTCQAEPGAKSSEEAKHACPEDIGSELKTSEWAVQPTEPYQMPCLGTSLE GTKRKGSSASALSILSRSADFKSLQERAVKKQENNADNDENENKNTINKMDHGKAAEK SVNHDTGSDRLGATLGMSAGLSLQKNVFPLTPFLSAPLLTNYNTIDSLVDPVLWTSLV PVLPTGPSRNPEASKTETSSTYTFFRPEG" CDS join(26652935..26653146,26654379..26654461, 26654603..26654611,26654703..26654791,26655413..26655486, 26655560..26655610,26656461..26656525,26656704..26657332, 26657920..26657928) /locus_tag="TCM_024554" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="AP2 domain-containing transcription factor isoform 1" /protein_id="EOY09154.1" /db_xref="Phytozome:POPTR_0016s05670.1" /db_xref="TAIR:AT2G41710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9T5" /translation="MASTSSSDPGMKAEASGGENSETVIANDQLLLYRGLKKAKKERG CTAKERISKMPPCTAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLG AYDDEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREDYLASLRRKSSG FSRGISKYRGLSSSRWDSSFGRVSGSEYFNSMQYSDDPATESDYIGGFCIERKIDLTG CIKWWGTNKTCQAEPGAKSSEEAKHACPEDIGSELKTSEWAVQPTEPYQMPCLGTSLE GTKRKGSSASALSILSRSADFKSLQERAVKKQENNADNDENENKNTINKMDHGKAAEK SVNHDTGSDRLGATLGMSAGLSLQKNVFPLTPFLSAPLLTNYNTIDSLVDPVLWTSLV PVLPTGPSRNPEGC" gene 26658977..26672659 /locus_tag="TCM_024555" /note="dbxref CacaoGD:Thecc1EG024555" mRNA join(26658977..26658984,26669616..26670436, 26672349..26672659) /locus_tag="TCM_024555" /product="Chalcone and stilbene synthase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s19450.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024559t1" /inference="similar to AA sequence:Phytozome:GSVIVT01032968001" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.30 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5730t1" mobile_element 26661367..26661677 /note="source:scaffold_6_CACTA_0699 11702 12009" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(26662024..26664240) /note="source:CACAO_M_S_E32248_F87_scaffold_3 567 2787" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26664226..26669108 /note="source:CACAO_M_E22900_F87_scaffold_3 2451 7326" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS 26669622..26670404 /locus_tag="TCM_024555" /note="paralog of Thecc1EG024559t1" /codon_start=1 /product="Chalcone and stilbene synthase family protein" /protein_id="EOY09156.1" /db_xref="Phytozome:GSVIVT01032968001" /db_xref="TAIR:AT5G13930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P13114" /translation="MISKRHFVLTEEIINKNPNISTYSSPSLEISQQILAAEVPKLAM EAASKAIQEWGQPKSQITHLIFSAGSGMEMPGADHRLTKLLGRPSVKRVMMYFQGCYA GGTILRMAKDIAESNAGARVLVIISDITLPTFRAPNEHNIPSLISKAIMGDGAAAMIR GADPNVLKERPLFQIVSATEKIIPDSVGAIKGHMHEAGHGIHLTRDVPKLIANNIDKC LAEALSPRSINDWNSFFWIVHPLGNAILDQIEIKLGLKRINF" mobile_element complement(26673116..26673594) /note="source:scaffold_10_CACTA_0130 9052 9609" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(26673595..26673954) /note="source:CACAO_on_E203_scaffold_7 4758 5111" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(26673955..26674916) /note="source:scaffold_10_CACTA_0130 7927 9051" /mobile_element_type="transposon:TIR/CACTA" mobile_element 26675084..26685048 /note="source:scaffold_5_CACTA_0606 1 9965" /mobile_element_type="transposon:TIR/CACTA" mobile_element 26685149..26686130 /note="source:scaffold_5_CACTA_0606 9966 10947" /mobile_element_type="transposon:TIR/CACTA" gene 26688689..26690371 /locus_tag="TCM_024558" /note="dbxref CacaoGD:Thecc1EG024558" mRNA join(26688689..26688910,26689181..26690371) /locus_tag="TCM_024558" /product="Chalcone synthase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s13420.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024559t1" /inference="similar to AA sequence:Phytozome:POPTR_0014s14200.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc5947t1" CDS join(26688733..26688910,26689181..26690187) /locus_tag="TCM_024558" /note="paralog of Thecc1EG024559t1" /codon_start=1 /product="Chalcone synthase" /protein_id="EOY09157.1" /db_xref="Phytozome:POPTR_0014s14200.1" /db_xref="TAIR:AT5G13930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P13114" /translation="MALPENFGRQKQAQSAATILSIGTANPVFCISQIDYPDYYFRVT KSEHMTQLKGKFKQICEKSMIRKRHFVLTEEILKKNASISTYDDPSLDARREIAFAQV PKLAMEAASKAIQEWGQPKSQITHLIFSSLSGMDMPGADYHLTKLLGLPSSVKRIMLN FQPCYASGTILRMAKDIAENNAGARILVVSTEISIGAFHGPNEHDIASLIGQAIVGDG AAAMIVGADPDVLNERPLFQIVSTAQNIIPGSGGAIEGHVREAGYSIQLSKDVPKLIA NNLESCLSEALSPISINDWNSFFWIVHPGGSAILDQIEIKLGLKKEKLLATRHVLSEF GNMSVACVLFILDEMKKKSLEKGKATTGEGLEWGLLIGFGSGITLETVVLRSFPITIT HP" mobile_element 26691031..26691686 /note="source:CACAO_on_SS_E135_scaffold_10 5007 5537" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(26694797..26694927) /note="source:scaffold_5_CACTA_0586 2284 2418" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(26698810..26698972) /note="source:CACAO_on_E33_A_scaffold_3 7403 7597" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(26699205..26699293) /note="source:CACAO_on_E33_A_scaffold_3 11625 11703" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 26700931..26702856 /locus_tag="TCM_024559" /note="dbxref CacaoGD:Thecc1EG024559" mRNA join(26700931..26701158,26701578..26702856) /locus_tag="TCM_024559" /product="Chalcone synthase" /inference="alignment:exonerate- protein:2:Phytozome:Sb05g019870.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024558t1" /inference="similar to AA sequence:Phytozome:POPTR_0014s14200.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2719t1" CDS join(26700981..26701158,26701578..26702578) /locus_tag="TCM_024559" /note="paralog of Thecc1EG024558t1" /codon_start=1 /product="Chalcone synthase" /protein_id="EOY09158.1" /db_xref="Phytozome:POPTR_0014s14200.1" /db_xref="TAIR:AT5G13930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P13114" /translation="MALPENFGRRKPAQSLATILSIGKATPAYCISQADFPDYYFRVT KSEHMTQLKEKFKRICEKSMISKRHFVLTEEIINKNPNISTYSSPSLDIRQQILAAEV PKLAMEAASKAIQEWGQPKSQITHLIFSAVSGVDMPGADYRLTKLLGLPSSVKRVMMY FQGCYAGGAILRMAKDIAENNTGARVLVVSSEILLGIFRAPNEHDTPSLIGNAILGDG AAAMIIGADPNALKERPLFQIVSASENIIPDSHGAIEGHIHEAGLSINLSRDVSKLIA DNIDKCLAEALSPISNNDWNSFFWIVHPGGNAILDQIEIKLGLKREKLLTTRHVLSEF GHMSSATVFFILDEMRRRSMEVGKATGEGLEWGFLLGLGAGITVDTVVLRSFPTNTTH " mobile_element 26701190..26701319 /note="source:scaffold_6_CACTA_0712 1381 1510" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(26701207..26701340) /note="source:scaffold_9_CACTA_0929 9946 10083" /mobile_element_type="transposon:TIR/CACTA" mobile_element 26705750..26705818 /note="source:scaffold_9_CACTA_0929 9968 10033" /mobile_element_type="transposon:TIR/CACTA" gene 26706711..26707527 /locus_tag="TCM_024560" /note="dbxref CacaoGD:Thecc1EG024560" mRNA 26706711..26707527 /locus_tag="TCM_024560" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is none, homology is paralog strong, intron is none, protein is utrpoor_complete" CDS 26706974..26707177 /locus_tag="TCM_024560" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09159.1" /translation="MKEAVAKGYHPRKVSIVWDFPPFTEKGVTILNLQSDVEKQQGEN EEYVGNPRETEDDSDYDLSMSSD" mobile_element 26711278..26711636 /note="source:CACAO_M_E58601_F7_scaffold_9 9544 9797" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26711578..26711669) /note="source:CACAO_M_S_E4591_F5_scaffold_1 18869 18962" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26711769..26712046) /note="source:CACAO_M_S_E4591_F5_scaffold_1 18581 18881" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26712135..26712834) /note="source:CACAO_M_S_E4591_F5_scaffold_1 17895 18587" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26713529..26716533) /note="source:CACAO_M_S_E86253_F7_scaffold_7 1 3005" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 26719250..26722325 /locus_tag="TCM_024561" /note="dbxref CacaoGD:Thecc1EG024561" mRNA join(26719250..26719652,26719847..26719973, 26721323..26721725,26721869..26722325) /locus_tag="TCM_024561" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007848t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.25 coverage; weak similarity to Gag-pro" CDS join(26719283..26719652,26719847..26719973, 26721323..26721725,26721869..26722078) /locus_tag="TCM_024561" /note="paralog of Thecc1EG007848t1; weak similarity to Gag-pro" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D0E2V7" /translation="MKGQIAKLMEMVEHLNEANRIHPQEFQSLQTEPHLKQPLNESQF DLYRSNIFLSDPSKNQGLGKVMKGMDELNMQMIELKDSISKIGSLGPTQPSSSGLPPS TYLQLTIFRPTFQPMNIGLRPNHLVAAMPMKPPYPKWYNLNTRCDYHGGVMGHSIEDC TAFKHSSWKDLARAFLIQYKHDMDIASNRLSLQNMEKRDIESFKEYAQRWIDVAAQVQ SPLTEKETTMLFIGTLQPPYYDKLIGNATKNFTDIVISGEMIENAIKKGEIGENSVSN MENCIASKKRKEELQVITREGQPWNQYFSPVPIKTVPNPSARNYDPNAKCDYHMRTIG HSIEKCRQLNEKIEILIKDGTLTFELMEHWKSTLP" mobile_element 26724111..26727551 /note="source:CACAO_M_E43944_F323_scaffold_5 1 3441" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 26740259..26774613 /locus_tag="TCM_024563" /note="dbxref CacaoGD:Thecc1EG024563" mRNA join(26740259..26740478,26744306..26744961, 26745065..26745144,26745264..26745432,26746586..26746665, 26747318..26747534,26747985..26748214,26748339..26748399, 26748558..26748644,26750532..26750764,26750851..26750965, 26751071..26751160,26752694..26752914,26752999..26753111, 26754195..26754301,26755171..26755233,26756156..26756242, 26758391..26758489,26758579..26758763,26759221..26759275, 26759384..26759455,26760122..26760814,26760988..26761166, 26762760..26762970,26764250..26764333,26765833..26765874, 26765963..26766059,26766464..26766588,26766679..26766783, 26768246..26768392,26769306..26769557,26769651..26769786, 26770091..26770170,26770291..26770398,26770857..26771007, 26771540..26771676,26771752..26771826,26771966..26772269, 26772550..26772683,26773713..26773771,26773863..26774613) /locus_tag="TCM_024563" /product="ABC transporter family, cholesterol/phospholipid flippase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033258001" /inference="similar to AA sequence:Phytozome:POPTR_0006s04790.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc555t6" mRNA join(26744394..26744961,26745065..26745144, 26745264..26745432,26746586..26746665,26747318..26747596, 26748339..26748399,26748558..26748644,26750532..26750764, 26750851..26750965,26751071..26751160,26752694..26752914, 26752999..26753111,26754195..26754301,26755171..26755233, 26756156..26756242,26758391..26758489,26758579..26758763, 26759221..26759275,26759384..26759455,26760122..26760814, 26760988..26761166,26762760..26762970,26764250..26764333, 26765833..26765874,26765963..26766059,26766464..26766588, 26766679..26766783,26768246..26768392,26769306..26769557, 26769651..26769786,26770091..26770170,26770291..26770398, 26770857..26771007,26771540..26771676,26771752..26771826, 26771966..26772269,26772550..26772683,26773713..26773771, 26773863..26774534) /locus_tag="TCM_024563" /product="ABC transporter family, cholesterol/phospholipid flippase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g29210.1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033258001" /inference="similar to AA sequence:Phytozome:POPTR_0006s04790.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc550t10; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc555t6" CDS join(26744875..26744961,26745065..26745144, 26745264..26745432,26746586..26746665,26747318..26747534, 26747985..26748214,26748339..26748399,26748558..26748644, 26750532..26750764,26750851..26750965,26751071..26751160, 26752694..26752914,26752999..26753111,26754195..26754301, 26755171..26755233,26756156..26756242,26758391..26758489, 26758579..26758763,26759221..26759275,26759384..26759455, 26760122..26760814,26760988..26761166,26762760..26762970, 26764250..26764333,26765833..26765874,26765963..26766059, 26766464..26766588,26766679..26766783,26768246..26768392, 26769306..26769557,26769651..26769786,26770091..26770170, 26770291..26770398,26770857..26771007,26771540..26771676, 26771752..26771826,26771966..26772269,26772550..26772683, 26773713..26773771,26773863..26773944) /locus_tag="TCM_024563" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="ABC transporter family, cholesterol/phospholipid flippase isoform 1" /protein_id="EOY09161.1" /db_xref="Phytozome:POPTR_0006s04790.1" /db_xref="TAIR:AT2G41700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9T2" /translation="MGTSKRQLKAMLRKNWLLKIRHPFITASEILLPTIVLLLLIGIR TRVDTQIHAAQPYIRKDMLVEVGDGISPNFQQVLELLLAKGEYIAFAPDTLQTRQMIN LISIKFPLLQLVSKIYEDELELDAYIRSDLYGTCDFKNCSNPKIKGAVIFHHQGPQLF DYSIRLNHTWAFSGFPDVKSIMDTNGPYLNDLELGVDIIPTMQYSFSGFLTLQQVLDS FIIFASQQTKTGMDSENREFSPLHSTGATSSLELPWTQFSPTKIRIAPFPTREYTDDE FQSIIKSVMGLLYLLGFLYPISRLISYTVFEKEQKIREGLYMMGLKDGIFHLSWFITY AFQFAFSSGIITICTMDSLFKYSDKTVVFVYFFVFGLSAIMLSFLISTFFTRAKTAVA VGTLSFLGAFFPYYTVNDEAVAMILKVIASFLSPTAFALGSINFADYERAHVGLRWSN IWRASSGVNFLVCLLMMLFDALLYCAVGLYLDKVLPSESGVRYPWNFIFHKCFCRKKS TIKHHVSCYEVKVNDMISKRKSIIPRKDVSGPALEAISLEMKQQEIDGRCIQIKDLHK VYATKKGKCCAVNSLKLNLYENQILALLGHNGAGKSTTISMLVGLLPPTSGDALVFGK SILTHMDEIRKELGVCPQNDILFPELTVREHLEMFAVLKGVKEDTLESAVTEMVDEVG LADKLNTFVRALSGGMKRKLSLGIALIGNSKVIILDEPTSGMDPYSMRLTWQLIKKIK KGRIILLTTHSMDEADELGDRIAIMADGSLKCCGSSLFLKHQYGVGYTLTLVKSAPTA SAAADIVYRYVPSATCVSEVGTEISFKLPLATSSAFESMFREIESCIGRSASTETSVS EDKRYLGIESYGISVTTLEEVFLRVAGCDFDEAESVKQGNNFVSPDIPSHEQVPKRIS YAKLLGSFKRIIGVISSMVTRICGLFVAIFLSFIHFLSMQCCGCCMISRSMVWQHSRA LLIKRAVSARRDRKTIVFQLLIPVIFLLFGLLFLKLKPHPDQPSVTLTTSHFNPLLSG SGGGGPIPFDLSWPIAKEVTKYVKGGWIQRFKQTAYKFPDSDSALADAVEAAGPALGP VLLSMSEYLMSSFNESYQSRYGAVVMDDVYEDGSLGYTVLHNCSCQHAAPTYINVMNS AILRLATSDKNMTIRTRNHPLPMTKSQRLQHHDLDAFSAAIIVNIAFSFIPASFAVPL VKEREVKAKHQQLISGVSVISYWVSTYIWDFISFLFPSTFAIILFYVFGLDQFIGRSF LPTVIMFLEYGLAVASSTYCLTFFFSDHTMAQNVVLLIHFFTGLILMVISFIMGLIKT TASANSFLKNFFRLSPGFCFADGLASLALLRQGMKDKSSDGVFDWNVTGASICYLGVE GICYFLLTLGLELLPTCNLTPIRLMKWWRRKNLPGDTSVLEPLLKSSFETAIHLDEDT DVRTERHRVLSGSIDNSIIFLRNLRKVYPGGKNYCAKVAVDSLTFSVQAGECFGFLGT NGAGKTTTLSMLTGEESPTEGTAFIFGKDIASNPKAARRHIGYCPQFDALLEYLTVQE HLELYARIKGVLDYRINDVVMEKLVEFDLLKHANKPSYTLSGGNKRKLSVAIAMIGDP PIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVG GRLRCIGSPQHLKTRFGNHLELEVKPTEVSSADLENLCRIIQERLFDIPSHPRSLLDD LEVCIGGIDSIVSENASVAEISLSEEMIVIVGRWLGNEERIKTLISSRPISDGLFGEQ LSEQLVRDGGIPLPIFSEWWLAREKFSAIDSFVVSSFPGATFHGCNGLSVKYQLPYRE GLSLADVFGHLERNRNQLGIAEYSISQSTLETIFNHFAANS" CDS join(26748585..26748644,26750532..26750764, 26750851..26750965,26751071..26751160,26752694..26752914, 26752999..26753111,26754195..26754301,26755171..26755233, 26756156..26756242,26758391..26758489,26758579..26758763, 26759221..26759275,26759384..26759455,26760122..26760814, 26760988..26761166,26762760..26762970,26764250..26764333, 26765833..26765874,26765963..26766059,26766464..26766588, 26766679..26766783,26768246..26768392,26769306..26769557, 26769651..26769786,26770091..26770170,26770291..26770398, 26770857..26771007,26771540..26771676,26771752..26771826, 26771966..26772269,26772550..26772683,26773713..26773771, 26773863..26773944) /locus_tag="TCM_024563" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="ABC transporter family, cholesterol/phospholipid flippase isoform 2" /protein_id="EOY09162.1" /db_xref="Phytozome:POPTR_0006s04790.1" /db_xref="TAIR:AT2G41700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9T2" /translation="MMGLKDGIFHLSWFITYAFQFAFSSGIITICTMDSLFKYSDKTV VFVYFFVFGLSAIMLSFLISTFFTRAKTAVAVGTLSFLGAFFPYYTVNDEAVAMILKV IASFLSPTAFALGSINFADYERAHVGLRWSNIWRASSGVNFLVCLLMMLFDALLYCAV GLYLDKVLPSESGVRYPWNFIFHKCFCRKKSTIKHHVSCYEVKVNDMISKRKSIIPRK DVSGPALEAISLEMKQQEIDGRCIQIKDLHKVYATKKGKCCAVNSLKLNLYENQILAL LGHNGAGKSTTISMLVGLLPPTSGDALVFGKSILTHMDEIRKELGVCPQNDILFPELT VREHLEMFAVLKGVKEDTLESAVTEMVDEVGLADKLNTFVRALSGGMKRKLSLGIALI GNSKVIILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEADELGDRIAIMAD GSLKCCGSSLFLKHQYGVGYTLTLVKSAPTASAAADIVYRYVPSATCVSEVGTEISFK LPLATSSAFESMFREIESCIGRSASTETSVSEDKRYLGIESYGISVTTLEEVFLRVAG CDFDEAESVKQGNNFVSPDIPSHEQVPKRISYAKLLGSFKRIIGVISSMVTRICGLFV AIFLSFIHFLSMQCCGCCMISRSMVWQHSRALLIKRAVSARRDRKTIVFQLLIPVIFL LFGLLFLKLKPHPDQPSVTLTTSHFNPLLSGSGGGGPIPFDLSWPIAKEVTKYVKGGW IQRFKQTAYKFPDSDSALADAVEAAGPALGPVLLSMSEYLMSSFNESYQSRYGAVVMD DVYEDGSLGYTVLHNCSCQHAAPTYINVMNSAILRLATSDKNMTIRTRNHPLPMTKSQ RLQHHDLDAFSAAIIVNIAFSFIPASFAVPLVKEREVKAKHQQLISGVSVISYWVSTY IWDFISFLFPSTFAIILFYVFGLDQFIGRSFLPTVIMFLEYGLAVASSTYCLTFFFSD HTMAQNVVLLIHFFTGLILMVISFIMGLIKTTASANSFLKNFFRLSPGFCFADGLASL ALLRQGMKDKSSDGVFDWNVTGASICYLGVEGICYFLLTLGLELLPTCNLTPIRLMKW WRRKNLPGDTSVLEPLLKSSFETAIHLDEDTDVRTERHRVLSGSIDNSIIFLRNLRKV YPGGKNYCAKVAVDSLTFSVQAGECFGFLGTNGAGKTTTLSMLTGEESPTEGTAFIFG KDIASNPKAARRHIGYCPQFDALLEYLTVQEHLELYARIKGVLDYRINDVVMEKLVEF DLLKHANKPSYTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWEVISRL STRQGKTAVILTTHSMNEAQALCTRIGIMVGGRLRCIGSPQHLKTRFGNHLELEVKPT EVSSADLENLCRIIQERLFDIPSHPRSLLDDLEVCIGGIDSIVSENASVAEISLSEEM IVIVGRWLGNEERIKTLISSRPISDGLFGEQLSEQLVRDGGIPLPIFSEWWLAREKFS AIDSFVVSSFPGATFHGCNGLSVKYQLPYREGLSLADVFGHLERNRNQLGIAEYSISQ STLETIFNHFAANS" gene 26774731..26778516 /locus_tag="TCM_024564" /note="dbxref CacaoGD:Thecc1EG024564" mRNA join(26774731..26775203,26776842..26776944, 26777151..26777211,26777782..26778516) /locus_tag="TCM_024564" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.16 coverage" CDS join(26775086..26775203,26776842..26776944, 26777151..26777211,26777782..26777925) /locus_tag="TCM_024564" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09163.1" /translation="MLPLGSIGAPLWSLKSDFRGEHRIRCSFGSPSRALYGSSGRISL PSCSVPPTPTLLGSLEEREIHALTPQGSTRSSNMRVKLILVWSTCLTVLVVEHNEEED ETEGEYEKIEEELDEEDENDIDDDAYENEENEFACSDDD" gene complement(26783401..26785410) /locus_tag="TCM_024565" /note="dbxref CacaoGD:Thecc1EG024565" mRNA complement(join(26783401..26784066,26784906..26785410)) /locus_tag="TCM_024565" /product="Heat shock factor protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s05680.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000610t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05680.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc982t8" CDS complement(join(26783611..26784066,26784906..26785151)) /locus_tag="TCM_024565" /note="paralog of Thecc1EG000610t1" /codon_start=1 /product="Heat shock factor protein, putative" /protein_id="EOY09164.1" /db_xref="Phytozome:POPTR_0016s05680.1" /db_xref="TAIR:AT2G41690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SU43" /translation="MESMASDSNKGLLDYVRKSTPPPFLMKTYMLVEDPITDDVISWN ADGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNEMFRKG DRELLCNIRRRKAWANKQQTAATIQVSPQDSDEDQKSSSTSSSSGHNSLVDENKRLKK ENGVLSLELTSMKRKCKELLDLVAKYAQFEEEKEDESPKLFGVRLEVEGERERKRRRA EISESASILLSQSCK" mobile_element 26787575..26787788 /note="source:CACAO_on_E565_scaffold_5 6 219" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 26787893..26788248 /note="source:CACAO_on_E279_scaffold_9 8061 8452" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(26787946..26788268) /note="source:CACAO_on_E680_scaffold_9 1 302" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 26790417..26790635 /note="source:CACAO_on_E279_scaffold_9 1 219" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 26790718..26791141 /note="source:CACAO_on_E565_scaffold_5 13493 13848" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 26793128..26794866 /note="source:CACAO_M_E5627_F4_scaffold_2 71 1824" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 26796386..26797789 /note="source:CACAO_M_S_E19555_F4_scaffold_3 1 1409" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(26798273..26800981) /note="source:CACAO_M_E45219_F318_scaffold_6 414 3105" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26799472..26800995 /note="source:CACAO_M_S_E86211_F313_scaffold_7 1069 2602" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26800986..26801035) /note="source:INTACT904F_F49_scaffold_6-int 5720 5752" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26803968..26805469) /note="source:CACAO_M_E44465_F17_scaffold_6 1 1521" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26809170..26811181 /note="source:CACAO_M_E22545_F73_scaffold_3 1 2032" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26811182..26812685) /note="source:CACAO_M_E42894_F73_scaffold_5 1394 2730" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26812686..26812891 /note="source:CACAO_M_S_E146091_F272_scaffold_11 8350 8545" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 26813305..26813999 /note="source:CACAO_M_E52822_F73_scaffold_8 2009 2702" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 26819551..26822088 /locus_tag="TCM_024566" /note="dbxref CacaoGD:Thecc1EG024566" mRNA join(26819551..26819842,26821701..26822088) /locus_tag="TCM_024566" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.11 coverage" CDS 26819556..26819786 /locus_tag="TCM_024566" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09165.1" /translation="MIHVFRQVKKYLFNYKYNHIRKSFESYTFTRNILPFVETTQGKL SSCSMGTSCNDLYGHSRIQAVATAHNILWPSH" mobile_element complement(26820264..26820312) /note="source:CACAO_M_S_E52697_F28_scaffold_5 6065 6113" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26820621..26820679 /note="source:CACAO_M_S_E52697_F28_scaffold_5 6065 6124" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26824593..26827371 /note="source:CACAO_M_E43949_F79_scaffold_5 1 2779" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 26831595..26845028 /locus_tag="TCM_024568" /note="dbxref CacaoGD:Thecc1EG024568" mRNA join(26831595..26832157,26837055..26837241, 26838144..26838389,26838461..26838512,26838624..26838703, 26838989..26839110,26839771..26839853,26840771..26840870, 26842191..26842649,26843300..26843409,26844252..26844676) /locus_tag="TCM_024568" /product="Cytidine/deoxycytidylate deaminase family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30074.m001345" /inference="similar to AA sequence:Phytozome:GSVIVT01037139001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5766t3" mRNA join(26838077..26838389,26838461..26838512, 26838624..26838703,26838989..26839110,26839771..26839853, 26840771..26840870,26842191..26842649,26843300..26843411, 26844252..26844349,26844958..>26845028) /locus_tag="TCM_024568" /product="Cytidine/deoxycytidylate deaminase family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30074.m001345" /inference="similar to AA sequence:Phytozome:GSVIVT01037139001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5766t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5766t3" mRNA join(26838077..26838389,26838461..26838512, 26838624..26838703,26838989..26839110,26839771..26839853, 26840771..26840870,26842191..26842649,26844252..26845028) /locus_tag="TCM_024568" /product="Cytidine/deoxycytidylate deaminase family protein, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:30074.m001345" /inference="similar to AA sequence:Phytozome:GSVIVT01037139001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:PASA:2:TSA:puevd3b023757t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5766t3" CDS join(26838317..26838389,26838461..26838512, 26838624..26838703,26838989..26839110,26839771..26839853, 26840771..26840870,26842191..26842649,26843300..26843411, 26844252..26844349,26844958..>26845026) /locus_tag="TCM_024568" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Cytidine/deoxycytidylate deaminase family protein, putative isoform 2" /protein_id="EOY09167.1" /db_xref="Phytozome:GSVIVT01037139001" /db_xref="TAIR:AT5G24670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GVY6" /translation="MDKHTPQIIHIPDKPRVPPSQQPTVNVYASIIEPKHANTLVRRL NQIAPLENLRHVRRIRRRHLQVQGGSPELSVILCLACENETQFNSMPPDVQEIVNSYN LCPFITKVSKYAALSKEEWDEQCKLWPTSYHPLTYNIDGITGFSEEDTKSVFSFMKSA VELAKSGDGLVVNAAVIVDPSAGLIIASACDEVCSWHMPTNKVKTETCCFKQLETFTS HADANRIVRDITMLSNGSSNNLQQCYTAISCLNPWQWAQHAFHRSHCYWHPLRHAAIV AVEASAARDRHLFPGSGYNEKLYEVDCTHSSSSISTTKRQKIVNLANVNNGGEHDAHI EGSHSLARPYLCTGYDIYLVWEPCTMCVPWGLSIKELGAYFMLSQILKRAHWEVFTGY RECNSSLSPILMNGSVRKKALLNQ" CDS join(26838317..26838389,26838461..26838512, 26838624..26838703,26838989..26839110,26839771..26839853, 26840771..26840870,26842191..26842649,26843300..26843409, 26844252..26844435) /locus_tag="TCM_024568" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Cytidine/deoxycytidylate deaminase family protein, putative isoform 1" /protein_id="EOY09166.1" /db_xref="Phytozome:GSVIVT01037139001" /db_xref="TAIR:AT5G24670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GVY6" /translation="MDKHTPQIIHIPDKPRVPPSQQPTVNVYASIIEPKHANTLVRRL NQIAPLENLRHVRRIRRRHLQVQGGSPELSVILCLACENETQFNSMPPDVQEIVNSYN LCPFITKVSKYAALSKEEWDEQCKLWPTSYHPLTYNIDGITGFSEEDTKSVFSFMKSA VELAKSGDGLVVNAAVIVDPSAGLIIASACDEVCSWHMPTNKVKTETCCFKQLETFTS HADANRIVRDITMLSNGSSNNLQQCYTAISCLNPWQWAQHAFHRSHCYWHPLRHAAIV AVEASAARDRHLFPGSGYNEKLYEVDCTHSSSSISTTKRQKIVNLANVNNGGEHDAHI EGSHSLARPYLCTGYDIYLVWEPCTMCAMGLVHQRIRRIFYAFPNPEAGALGSVHRLQ GEKSLNHHYAVFRVVLPEEVIGRTKLKL" CDS join(26838317..26838389,26838461..26838512, 26838624..26838703,26838989..26839110,26839771..26839853, 26840771..26840870,26842191..26842649,26844252..26844284) /locus_tag="TCM_024568" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Cytidine/deoxycytidylate deaminase family protein, putative isoform 3" /protein_id="EOY09168.1" /db_xref="Phytozome:GSVIVT01037139001" /db_xref="TAIR:AT5G24670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GVY6" /translation="MDKHTPQIIHIPDKPRVPPSQQPTVNVYASIIEPKHANTLVRRL NQIAPLENLRHVRRIRRRHLQVQGGSPELSVILCLACENETQFNSMPPDVQEIVNSYN LCPFITKVSKYAALSKEEWDEQCKLWPTSYHPLTYNIDGITGFSEEDTKSVFSFMKSA VELAKSGDGLVVNAAVIVDPSAGLIIASACDEVCSWHMPTNKVKTETCCFKQLETFTS HADANRIVRDITMLSNGSSNNLQQCYTAISCLNPWQWAQHAFHRSHCYWHPLRHAAIV AVEASAARDRHLFPGSGYNEKLYEVDCTHSSSSISTTKRQKIVNLANVCHGACPSKN" mobile_element 26848609..26850365 /note="source:CACAO_M_E70109_F106_scaffold_10 1 1726" /mobile_element_type="retrotransposon:LTR/Copia" gene 26850370..26851378 /locus_tag="TCM_024569" /note="dbxref CacaoGD:Thecc1EG024569" mRNA join(26850370..26850466,26850790..26850955, 26851073..26851378) /locus_tag="TCM_024569" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc2372t1" CDS join(26850922..26850955,26851073..26851290) /locus_tag="TCM_024569" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09169.1" /translation="MASRAIMEVLGWGLIRNSNGEWVRGFVLNIGSTDSLLAKLQGIC EGLLLARSLQISSLVLEVDALVVVQFLTVGFGSSHPYGH" gene 26853265..26861689 /locus_tag="TCM_024570" /note="dbxref CacaoGD:Thecc1EG024570" mRNA join(26853265..26853577,26853697..26853890, 26854967..26855174,26855285..26855390,26855837..26856102, 26857659..26857938,26859205..26859312,26859492..26859578, 26859697..26859801,26860939..26861069,26861283..26861689) /locus_tag="TCM_024570" /product="Thioredoxin reductase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033256001" /inference="similar to AA sequence:Phytozome:POPTR_0006s04760.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5771t3" mRNA join(26853431..26853577,26853697..26853890, 26854967..26855174,26855285..26855390,26855837..26856102, 26857659..26857938,26859205..26859312,26859489..26859578, 26859697..26859801,26860939..>26861113) /locus_tag="TCM_024570" /product="Thioredoxin reductase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033256001" /inference="similar to AA sequence:Phytozome:POPTR_0006s04760.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5771t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5771t3" mRNA join(26853553..26853890,26854967..26855174, 26855285..26855390,26855837..26856102,26857659..26857938, 26859205..26859312,26859492..26859578,26859697..26859801, 26860939..>26860962) /locus_tag="TCM_024570" /product="NADPH-dependent thioredoxin reductase C isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033256001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000987t1" /inference="similar to AA sequence:ricco:30006.m000289" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1550t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5771t3; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1553t2_C2" CDS join(26853680..26853890,26854967..26855174, 26855285..26855390,26855837..26856102,26857659..26857938, 26859205..26859312,26859492..26859578,26859697..26859801, 26860939..>26860962) /locus_tag="TCM_024570" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30006.m000289; paralog of Thecc1EG000987t1" /codon_start=1 /product="NADPH-dependent thioredoxin reductase C isoform 3" /protein_id="EOY09172.1" /db_xref="TAIR:AT2G41680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A6XJ27" /translation="MAVSPRIGIGIAPTPSAHRLAMSTLSNPFFFFYSSPPPTLRFHS PSTRPRPLSLRPKASAAAPVEPPPVPAKSVENVVIIGSGPAGYTAAIYAARANLKPVV FEGYQVGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELFQEDVEHI DVKNNPFTIRSSEREVKCHSMIFATGATAKRLRLPREDEFWSRGISACAICDGASPLF KGQVLGVVGGGDTATEEALYLTKYARHVHLLVRKDQLRASKAMQDRVYNNPNITLHFN TETVDVVSNMKGQMSGILTKRVDSGEESVLEAKGLFYGIGHSPNSQLLQGQVKLDSSG YVLVEEGSAKTSVEGVFAAGDVQDHQWRQAITAAGSGCIAALSVERYLVSNNLLVEFH QPQTEEVKKELTDRDVQEGFDITLTKHKGQYALRKLYHESPRLICVLYTAPTCGPCRT LKPILSKVIDEFDQN" CDS join(26853743..26853890,26854967..26855174, 26855285..26855390,26855837..26856102,26857659..26857938, 26859205..26859312,26859492..26859578,26859697..26859801, 26860939..26861069,26861283..26861343) /locus_tag="TCM_024570" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Thioredoxin reductase isoform 1" /protein_id="EOY09170.1" /db_xref="Phytozome:POPTR_0006s04760.1" /db_xref="TAIR:AT2G41680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A6XJ27" /translation="MSTLSNPFFFFYSSPPPTLRFHSPSTRPRPLSLRPKASAAAPVE PPPVPAKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQVGGVPGGQLMTTTEVE NFPGFPDGITGPDLMDRMRRQAERWGAELFQEDVEHIDVKNNPFTIRSSEREVKCHSM IFATGATAKRLRLPREDEFWSRGISACAICDGASPLFKGQVLGVVGGGDTATEEALYL TKYARHVHLLVRKDQLRASKAMQDRVYNNPNITLHFNTETVDVVSNMKGQMSGILTKR VDSGEESVLEAKGLFYGIGHSPNSQLLQGQVKLDSSGYVLVEEGSAKTSVEGVFAAGD VQDHQWRQAITAAGSGCIAALSVERYLVSNNLLVEFHQPQTEEVKKELTDRDVQEGFD ITLTKHKGQYALRKLYHESPRLICVLYTAPTCGPCRTLKPILSKVIDEFDQNVHFVEI DIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVSGVKMKREYREFIEVNK" CDS join(26853743..26853890,26854967..26855174, 26855285..26855390,26855837..26856102,26857659..26857938, 26859205..26859312,26859489..26859578,26859697..26859801, 26860939..>26861112) /locus_tag="TCM_024570" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Thioredoxin reductase isoform 2" /protein_id="EOY09171.1" /db_xref="Phytozome:POPTR_0006s04760.1" /db_xref="TAIR:AT2G41680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A6XJ27" /translation="MSTLSNPFFFFYSSPPPTLRFHSPSTRPRPLSLRPKASAAAPVE PPPVPAKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQVGGVPGGQLMTTTEVE NFPGFPDGITGPDLMDRMRRQAERWGAELFQEDVEHIDVKNNPFTIRSSEREVKCHSM IFATGATAKRLRLPREDEFWSRGISACAICDGASPLFKGQVLGVVGGGDTATEEALYL TKYARHVHLLVRKDQLRASKAMQDRVYNNPNITLHFNTETVDVVSNMKGQMSGILTKR VDSGEESVLEAKGLFYGIGHSPNSQLLQGQVKLDSSGYVLVEEGSAKTSVEGVFAAGD VQDHQWRQAITAAGSGCIAALSVERYLVSNNLLVEFHQQPQTEEVKKELTDRDVQEGF DITLTKHKGQYALRKLYHESPRLICVLYTAPTCGPCRTLKPILSKVIDEFDQNVHFVE IDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRLVNLILIKFFPCTT" gene complement(26861518..26871882) /locus_tag="TCM_024571" /note="dbxref CacaoGD:Thecc1EG024571" mRNA complement(join(26861518..26862798,26863200..26863307, 26863402..26863674,26863749..26864030,26864192..26864326, 26864421..26864543,26864641..26865102,26865377..26865456, 26871607..26871882)) /locus_tag="TCM_024571" /product="ABC transporter G family member 15 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s05710.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040754t1" /inference="similar to AA sequence:frave:gene02443" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5754t2" mRNA complement(join(26861518..26863026,26863200..26863307, 26863402..26863674,26863749..26864030,26864192..26864326, 26864421..26864543,26864641..26865236)) /locus_tag="TCM_024571" /product="ABC transporter G family member 15 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s05710.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040754t1" /inference="similar to AA sequence:frave:gene02443" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:PASA:2:TSA:puevd3b023760t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5754t2" CDS complement(join(26862511..26862798,26863200..26863307, 26863402..26863674,26863749..26864030,26864192..26864326, 26864421..26864543,26864641..26865102,26865377..26865456, 26871607..26871844)) /locus_tag="TCM_024571" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene02443; paralog of Thecc1EG040754t1" /codon_start=1 /product="ABC transporter G family member 15 isoform 1" /protein_id="EOY09173.1" /db_xref="TAIR:AT3G21090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9II86" /translation="MDRLRRNGSGDWSELSVGKEERKAAYLVWEDLNVVTANLRNGSP RKLLNGLSGFAEPDRIMAIMGPSGSGKSTLLDALAGRLSSNVIMSGKVVFSGRSRSIG CRDISYATQEDVFLGTLTVRETLTYSAQLRLPNTLTKKEMDNIVEDTIHKMGLQDCAD RVIGNWHLRGISGGEKRRLSVGVEILTQPHVLFLDEPTSGLDSASAFFVIQVLRNIAH DERIVVCSIHHPSSDVFNLFDDLYLLSGGETVYFGDAQHAVKFFADAGFPCPTRRNPP DHFLGCINSDFDKIIAILTQTRKHFEMMPLSSGSSTNLTTTEIKARLVERYKASDDAR NARKKIQEFALIEENCSKSNTSKPGWLEQLRTLTRRSSLNICRDIGYYWLRIVFYILV SLSAGSFFFNMGTSNSAILLRGKFNGFIYGLMIVLSIGGLPFFTEEIKVFRRERFGGH YGEAVFVLSNFLSSLPFVAAISIGSGTILYYMVNLHRGLSHYCYLCINLLCCIAVAET CMLIVTVLVPNLLMAIGASAGLAVLVMMPTGIFRRPLDLPRFFWYYPMYYISYVAWAV EGQYKNDMIGLEFDPPVPGEPKLKGEMILRNTFGVKLHHSKWWDLAALASLLAVLRIL FYTVLRYKERASSILHRFCATTIQHPFRTFHQGSKSSW" CDS complement(join(26863018..26863026,26863200..26863307, 26863402..26863674,26863749..26864030,26864192..26864326, 26864421..26864543,26864641..26865213)) /locus_tag="TCM_024571" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene02443; paralog of Thecc1EG040754t1" /codon_start=1 /product="ABC transporter G family member 15 isoform 2" /protein_id="EOY09174.1" /db_xref="TAIR:AT3G21090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9II86" /translation="MEVSLLNLKNENSKFVRACHGQNDRWYLMCFLAYFPKSYATQED VFLGTLTVRETLTYSAQLRLPNTLTKKEMDNIVEDTIHKMGLQDCADRVIGNWHLRGI SGGEKRRLSVGVEILTQPHVLFLDEPTSGLDSASAFFVIQVLRNIAHDERIVVCSIHH PSSDVFNLFDDLYLLSGGETVYFGDAQHAVKFFADAGFPCPTRRNPPDHFLGCINSDF DKIIAILTQTRKHFEMMPLSSGSSTNLTTTEIKARLVERYKASDDARNARKKIQEFAL IEENCSKSNTSKPGWLEQLRTLTRRSSLNICRDIGYYWLRIVFYILVSLSAGSFFFNM GTSNSAILLRGKFNGFIYGLMIVLSIGGLPFFTEEIKVFRRERFGGHYGEAVFVLSNF LSSLPFVAAISIGSGTILYYMVNLHRGLSHYCYLCINLLCCIAVAETCMLIVTVLVPN LLMAIGASAGLAVLVMMPTGIFRRPLDLPRFFWYYPMYYISYVAWAVEIN" mobile_element 26866949..26870068 /note="source:CACAO_M_E35265_F115_scaffold_5 1 3121" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(26874185..26917422) /locus_tag="TCM_024572" /note="dbxref CacaoGD:Thecc1EG024572" mRNA complement(join(26874185..26874217,26881764..26882304, 26898504..26899355,26901360..26901571,26905374..26905470, 26906649..26906719,26906855..26906996,26908693..26908797, 26908930..26909156,26917217..26917422)) /locus_tag="TCM_024572" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s04750.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s04750.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:PASA:2:TSA:puevd3b023761t1a3; inference alignment:Newbler:10:TSA:cgbaB_g00727t00002" mRNA complement(join(26874185..26874217,26881764..26882304, 26898504..26899355,26901360..26901571,26905374..26905470, 26906649..26906719,26906855..26906996,26908231..26908308, 26908693..26908797,26908930..26909156,26917217..26917422)) /locus_tag="TCM_024572" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s04750.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s04750.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00727t00002" gene complement(26874185..26875496) /locus_tag="TCM_024573" /note="dbxref CacaoGD:Thecc1EG024573" mRNA complement(join(26874185..26874217,26874430..26874732, 26875328..26875496)) /locus_tag="TCM_024573" /product="Ca-2+ dependent nuclease-like protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019891t1" /inference="similar to AA sequence:Phytozome:Sb03g004830.1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(26874442..26874732,26875328..26875462)) /locus_tag="TCM_024573" /note="paralog of Thecc1EG019891t1" /codon_start=1 /product="Ca-2+ dependent nuclease-like protein" /protein_id="EOY09177.1" /db_xref="Phytozome:Sb03g004830.1" /db_xref="TAIR:AT3G56170.1" /translation="MKYSQTDKQKSRYILYQPLAHGTDCLECLLSFHSASFQNCKNQM SGIDTPKKATPYGKKAKDELIKLMCGKKLRVFVNDIDLYGRYVANMYCDGIFVQEVIL RKGLAWHYSMYDHRLELAIISRQHPFHSYTSVENFLRTF" gene complement(26875671..26883323) /locus_tag="TCM_024574" /note="dbxref CacaoGD:Thecc1EG024574" mRNA complement(join(26875671..26875949,26878964..26879530, 26883184..26883323)) /locus_tag="TCM_024574" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028090t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(26879079..26879447) /locus_tag="TCM_024574" /note="paralog of Thecc1EG028090t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09178.1" /translation="MLIELMRRSWPGKLGRDRDEFKLNVNGSSKNASQNAAGGGVLRD HSSNIIFGFLKNFGPQNSLQVELMALYRGLHLCIEHNVSRVWIEMDAQIVVQMIQGDL KGSYKIRYLLESIRKYLQVM" mobile_element complement(26879396..26882625) /note="source:CACAO_M_E70891_F369_scaffold_10 1970 8212" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(26883370..26892304) /locus_tag="TCM_024576" /note="dbxref CacaoGD:Thecc1EG024576" mRNA complement(join(26883370..26884069,26884430..26884615, 26885344..26885881,26891116..26891156,26891791..26891846, 26892023..26892045,26892155..26892304)) /locus_tag="TCM_024576" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021522t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(26883568..26884069,26884430..26884615, 26885344..26885881,26891116..26891156,26891791..26891846, 26892023..26892040)) /locus_tag="TCM_024576" /note="paralog of Thecc1EG021522t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09179.1" /translation="MAFITDALNIFETSLRHGKFDESHICHEFQGASYESCFATRTQE PLMARGDFNVILSRNERLLGAEPHASSMEDFALTLLDCGLLDAGFEGNRFTWTNSHMF QRLDRVFYNMQWSAHFASTRVQHLNRDESDHCPLLITSTESLVERPSSFRFLHAWLKH HDFLNFVGRNWHEPMHSTGLMSFWLKQQRLKKALKVWSKNVFGDIFRNIQVAEQHALE LISDNILLAQELVGKIDYNARGGNVILKLDMMKAYDRLNWDFLYLILERFDFNSQWID MIKSSKKQIITQATGFHHKTLLVTYLGAPLYKRPKKVMLFDSLITKIWERITRWENKI LSIGGRITLVQSVLSSLPIYLLQVLKPQVSVIEKIDILFNSFLWGDTLDSKHIHWSSW NKVTFPSSKGGLDIRSLQDVFEAFSAKLWWCFQTCSSLWTRYMKAKYDTDKIPQ" gene 26887701..26889222 /locus_tag="TCM_024577" /note="dbxref CacaoGD:Thecc1EG024577" mRNA 26887701..26889222 /locus_tag="TCM_024577" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.35 coverage" CDS 26887997..26888416 /locus_tag="TCM_024577" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09180.1" /translation="MPLKAFRISCIFGIRVNFPTMKYLKGYARAFISSSKKDTIGRSL YQNGSRFAGIIGGLSPAATLKNDFFCVRKKTNGWFGKSMFFKPPLTNDCKSLVCVALC VVPHYMGKGKPLYWDGMGRSDGLPVAILSVLGSKGKC" mobile_element 26897416..26898110 /note="source:MITE_Unknow_2_12 1 695" /mobile_element_type="transposon:TIR/MITE" CDS complement(join(26899104..26899355,26901360..26901571, 26905374..26905470,26906649..26906719,26906855..26906996, 26908693..26908797,26908930..26909097)) /locus_tag="TCM_024572" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /protein_id="EOY09176.1" /db_xref="Phytozome:POPTR_0006s04750.1" /db_xref="TAIR:AT2G41670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L607" /translation="MGIKGIAKKAMEVGEMGFNKEGGVINWFPGHMAAATRAIRNRLK LSDLVIEVRDSRIPFSSAHQDLQPQLSAKRRIIALNKKDLANSNVLNLLELVEFKLKE VISREPTLLVMVVGVPNVGKSALINSIHQIASTRFPVQEKMKRATVGPLPGVTQDIAG YKIAHQPSIYVLDTPGVLVPSIPNVETGLKLALAGSVKDSVVGEDRIAQYLLAVLNTR GTPLHWKHSNQLQEITNITEYKPDYNPKDLRPKRKKLSSVSDVLYVKDLATEVQHALY VTLSEFSGNIEDENDLECLIEHQFEVLQKALKIPHKSSEARLMVSKKFLTLFRTGKLG SFVLDDVPEFNLVS" CDS complement(join(26899104..26899355,26901360..26901571, 26905374..26905470,26906649..26906719,26906855..26906996, 26908231..26908308,26908693..26908797,26908930..26909097)) /locus_tag="TCM_024572" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /protein_id="EOY09175.1" /db_xref="Phytozome:POPTR_0006s04750.1" /db_xref="TAIR:AT2G41670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L607" /translation="MGIKGIAKKAMEVGEMGFNKEGGVINWFPGHMAAATRAIRNRLK LSDLVIEVRDSRIPFSSAHQDLQPQLSAKRRIIALNKKDLANSNVLNKWVRYFDSCKQ DCLPINAHSRSSVRKLLELVEFKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIAS TRFPVQEKMKRATVGPLPGVTQDIAGYKIAHQPSIYVLDTPGVLVPSIPNVETGLKLA LAGSVKDSVVGEDRIAQYLLAVLNTRGTPLHWKHSNQLQEITNITEYKPDYNPKDLRP KRKKLSSVSDVLYVKDLATEVQHALYVTLSEFSGNIEDENDLECLIEHQFEVLQKALK IPHKSSEARLMVSKKFLTLFRTGKLGSFVLDDVPEFNLVS" mobile_element 26910470..26910730 /note="source:CACAO_on_E33_A_scaffold_3 2916 3165" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(26910740..26910909) /note="source:CACAO_on_E33_A_scaffold_3 7595 7782" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 26914602..26914710 /note="source:CACAO_M_S_E15347_F33_scaffold_2 5795 5900" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(26914614..26917768) /note="source:INTACT904F_F49_scaffold_6-int 5715 7632" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26919977..26921522 /note="source:CACAO_M_E43953_F359_scaffold_5 1378 2923" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 26921445..26921532 /note="source:scaffold_5_CACTA_0591 4759 4841" /mobile_element_type="transposon:TIR/CACTA" gene complement(26926933..26928427) /locus_tag="TCM_024578" /note="dbxref CacaoGD:Thecc1EG024578" mRNA complement(26926933..26928427) /locus_tag="TCM_024578" /product="Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta" /inference="alignment:exonerate- protein:2:ricco:29775.m000103" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011889t1" /inference="similar to AA sequence:ricco:29775.m000103" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14003t1" CDS complement(26927282..26928130) /locus_tag="TCM_024578" /note="dbxref ricco:29775.m000103; paralog of Thecc1EG011889t1" /codon_start=1 /product="Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta" /protein_id="EOY09181.1" /db_xref="TAIR:AT2G41660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22227" /translation="MKHHQELATLQRSTSYNNFNYKSTRNKINPSNFPRSTSLPIPEH EEISDKLLIPRTSSSPRSSIQRFHNVNSRFSSLLRSLLKIIAFPNIIPTTCKWLTLPT HLSITPSLGRKVTGTLFGLRRGHVSFAVQDDPRSEPVLLLELAMSTSSLVKEMSSGLV RIALECEKVPGRTAAQPCRTGKLFHEPMWTMYCNGRKSGYAVTRTCTESDWHVLSTVQ SVSVGAGVIPVVEDARKGGGSEGELLYMRAKFERVVGSRDSEAFYMMNPDNNGGPELS IFLLRI" mobile_element 26929158..26929211 /note="source:scaffold_5_CACTA_0614 1444 1500" /mobile_element_type="transposon:TIR/CACTA" mobile_element 26929340..26930449 /note="source:scaffold_5_CACTA_0614 1494 2605" /mobile_element_type="transposon:TIR/CACTA" gene complement(26932128..26936256) /locus_tag="TCM_024579" /note="dbxref CacaoGD:Thecc1EG024579" mRNA complement(join(26932128..26932503,26933177..26933337, 26933454..26933495,26933997..26934038,26934657..26934756, 26935150..26935214,26935345..26935423,26935991..26936256)) /locus_tag="TCM_024579" /product="AGAMOUS-like 18, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s04730.1" /inference="similar to AA sequence:Phytozome:Glyma02g33040.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g09236t00001" CDS complement(join(26932416..26932503,26933177..26933337, 26933454..26933495,26933997..26934038,26934657..26934756, 26935150..26935214,26935345..26935423,26935991..26936172)) /locus_tag="TCM_024579" /codon_start=1 /product="AGAMOUS-like 18, putative" /protein_id="EOY09182.1" /db_xref="Phytozome:Glyma02g33040.1" /db_xref="TAIR:AT3G57390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9K4" /translation="MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKARELSILCDAEVG VIVFSSTGKVYQWSSTSMEHILLRYSRGTTEDPSQEHPSDEHKNLQPIDVNTLKEEYL RLRAAYMRLNGKELDGLTFKELQQLEHQLNEGILSVKQQKEQILLEQLKRSRLQERQA ILENETLRKQIVELQQNTSSNLLEYNPLQRVSPYSSKAEYDCASEEEDDHADNNDHSD TSLHLGLPSDVGRKRKVAKIEPVSNETTSQVASE" mobile_element 26939252..26939415 /note="source:MITE_Unknow_2_12 519 695" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(26940120..26942027) /note="source:CACAO_Mutator_E149_scaffold_1 2225 4147" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(26942423..26942533) /note="source:CACAO_Mutator_E714_scaffold_3 870 978" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(26944195..26944432) /note="source:CACAO_on_E205_scaffold_7 2 241" /mobile_element_type="transposon:TIR/Mutator" mobile_element 26946322..26956266 /note="source:CACAO_M_S_E66354_F74_scaffold_5 1 9945" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 26958439..26967802 /locus_tag="TCM_024583" /note="dbxref CacaoGD:Thecc1EG024583" mRNA join(26958439..26958985,26959160..26959263, 26959478..26959635,26959729..26959875,26959976..26960225, 26960687..26960778,26960901..26960972,26961372..26961473, 26961947..26962021,26962669..26962750,26963157..26963252, 26963339..26963512,26963608..26963714,26964009..26964128, 26964248..26964456,26964586..26964836,26965112..26965275, 26965711..26966381,26966675..26966856,26966982..26967802) /locus_tag="TCM_024583" /product="Kinesin heavy chain, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29775.m000101" /inference="similar to AA sequence:ricco:29775.m000101" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.44 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5814t1" mRNA join(26958872..26958985,26959160..26959263, 26959478..26959635,26959729..26959875,26959976..26960225, 26960687..26960778,26960901..26960972,26961372..26961473, 26961947..26962021,26962669..26962750,26963157..26963252, 26963339..26963512,26963608..26963714,26964009..26964184, 26964289..26964456,26964586..26964836,26965112..26965275, 26965711..26966381,26966675..26966856,26966982..26967577) /locus_tag="TCM_024583" /product="Kinesin heavy chain, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:29775.m000101" /inference="similar to AA sequence:ricco:29775.m000101" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5814t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5814t1" mRNA join(26958941..26958985,26959160..26959263, 26959478..26959635,26959729..26959875,26959976..26960225, 26960687..26960778,26960901..26960972,26961372..26961473, 26961947..26962021,26962669..26962750,26963157..26963252, 26963339..26963512,26963608..26963714,26964009..26964189, 26964294..26964456,26964586..26964836,26965112..26965275, 26965711..26965889,26966675..26966856,26966982..26967567) /locus_tag="TCM_024583" /product="Kinesin heavy chain, putative isoform 4" /inference="alignment:exonerate- protein:2:ricco:29775.m000101" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026726t1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1125t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5814t1" mRNA join(<26958941..26958985,26959160..26959263, 26959478..26959635,26959729..26959875,26959976..26960225, 26960687..26960778,26960901..26960972,26961372..26961473, 26961947..26962021,26962669..26962750,26963157..26963252, 26963339..26963512,26963608..26963714,26964009..26964189, 26964294..26964456,26964586..26964836,26965112..26965275, 26965711..26966381,26966675..26966856,26966982..>26967021) /locus_tag="TCM_024583" /product="Kinesin heavy chain, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:29775.m000101" /inference="similar to AA sequence:ricco:29775.m000101" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial; similar to RNA sequence, EST 0.60 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1166t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5814t1" CDS join(<26958942..26958985,26959160..26959263, 26959478..26959635,26959729..26959875,26959976..26960225, 26960687..26960778,26960901..26960972,26961372..26961473, 26961947..26962021,26962669..26962750,26963157..26963252, 26963339..26963512,26963608..26963714,26964009..26964189, 26964294..26964456,26964586..26964836,26965112..26965275, 26965711..26966381,26966675..26966856,26966982..>26967019) /locus_tag="TCM_024583" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29775.m000101" /codon_start=1 /product="Kinesin heavy chain, putative isoform 2" /protein_id="EOY09184.1" /db_xref="TAIR:AT3G10310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T5B8" /translation="FFFSTEDIYPERLPKKRKKKKKVGRFEMEYVTRTGFHDLNLASR KAEEAALRRYVAVAWLETLVGPLGISSQPSEKEFISCLRNGLILCNVINKIQPGAVPK VVESNSHAQSLTREFQPPPAYQYFENVRNFLVAIEELKLPAFEACDLERDNLEAGSAA KVVDCILALKSYHEYKQINCGNGNGYYKLTRSPMVMHSATKIHSRSSSESCRRLEMSA ICDKQPTSNGEIQKLEGTIVKVLADYMADTKENVDDNLLGSFHERNPDSVKLLKKMIL SCLDEQLQDKFPELKSVFKGILKESNGSTLHSTPMALEDVSSFGHFQGSRAGTKKANR NHRHLLKMQEKELLDLKALLSTTKREFEHLQLQLQVDLKDLGSQVEEMSTAALQYYKV VEENRKLYNMVQDLKGNIRVFCRIRPAFCAGTRNAIDFIGEDGSLVILDPLKPQKDGR KVFQFNRVFGPSATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTYTMSGPSGGS TEDLGINYLALNDLFEISNQRKDIISYEIQVQMVEIYNEQIRDLLSENSSSTKLEIHS CPRDNGLSLPDATMHTVKSASDVLNLMKFGEVNRVVCSTALNNRSSRSHSILTVHVHG KDASGNMLRSCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNT HTPYRNSKLTLLLQDSLGGHAKTLMFAHVSPEGDSFGETISTLKFAQRVSTVELGAAR LNKESSEVMQLKEQIENLKKALANKEAQSTLSYKIKEPKSPFEKQKATIEKTPPRTRR LGIENGSTKKSEKAMNCEDRKGPKTPSVPTRARRLSLEGPRYVKKDNSQINVSEDVSK SLHASTVSVQKYSEFQEAEAVTKQFGDLSSGSSIMDVYFSKAPRSPASSSFQKQAQKV DCRTQIPRLQLPKTPEPQVLARNDIQAVMQSEHSESRMTIGKGSQIRKSLRSTIGKLI SGSEKRNLQNSVELKSPIMEESTISDVKLPLTANARAMRRQSLTGIQTSGSDRSRRSS LGGKPTDSSTTPSSNRNAKTP" CDS join(26959197..26959263,26959478..26959635, 26959729..26959875,26959976..26960225,26960687..26960778, 26960901..26960972,26961372..26961473,26961947..26962021, 26962669..26962750,26963157..26963252,26963339..26963512, 26963608..26963714,26964009..26964189,26964294..26964456, 26964586..26964836,26965112..26965275,26965711..26965889, 26966675..26966856,26966982..26967064) /locus_tag="TCM_024583" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG026726t1" /codon_start=1 /product="Kinesin heavy chain, putative isoform 4" /protein_id="EOY09186.1" /db_xref="TAIR:AT3G10310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T5B8" /translation="MEYVTRTGFHDLNLASRKAEEAALRRYVAVAWLETLVGPLGISS QPSEKEFISCLRNGLILCNVINKIQPGAVPKVVESNSHAQSLTREFQPPPAYQYFENV RNFLVAIEELKLPAFEACDLERDNLEAGSAAKVVDCILALKSYHEYKQINCGNGNGYY KLTRSPMVMHSATKIHSRSSSESCRRLEMSAICDKQPTSNGEIQKLEGTIVKVLADYM ADTKENVDDNLLGSFHERNPDSVKLLKKMILSCLDEQLQDKFPELKSVFKGILKESNG STLHSTPMALEDVSSFGHFQGSRAGTKKANRNHRHLLKMQEKELLDLKALLSTTKREF EHLQLQLQVDLKDLGSQVEEMSTAALQYYKVVEENRKLYNMVQDLKGNIRVFCRIRPA FCAGTRNAIDFIGEDGSLVILDPLKPQKDGRKVFQFNRVFGPSATQDDVFKDTQPLIR SVMDGYNVCIFAYGQTGSGKTYTMSGPSGGSTEDLGINYLALNDLFEISNQRKDIISY EIQVQMVEIYNEQIRDLLSENSSSTKLEIHSCPRDNGLSLPDATMHTVKSASDVLNLM KFGEVNRVVCSTALNNRSSRSHSILTVHVHGKDASGNMLRSCLHLVDLAGSERVDKSE VTGDRLKEAQYINKSLSCLGDVITALAQKNTHTPYRNSKLTLLLQDSLGGHAKTLMFA HVSPEGDSFGETISTLKFAQRVSTVELGAARLNKESSEVMQLKEQIENLKKALANKEA QSTLSYKIKEPKSPFEKQKATIEKTPPRTRRLGIENGSTKKSEKAMKNLQNSVELKSP IMEESTISDVKLPLTANARAMRRQSLTGIQTSGSDRSRRSSLGGKPTDSSTTPSSNRN AKTPPPVHPSTKTTKRWL" CDS join(26959197..26959263,26959478..26959635, 26959729..26959875,26959976..26960225,26960687..26960778, 26960901..26960972,26961372..26961473,26961947..26962021, 26962669..26962750,26963157..26963252,26963339..26963512, 26963608..26963714,26964009..26964184,26964289..26964456, 26964586..26964836,26965112..26965275,26965711..26966381, 26966675..26966856,26966982..26967064) /locus_tag="TCM_024583" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29775.m000101" /codon_start=1 /product="Kinesin heavy chain, putative isoform 3" /protein_id="EOY09185.1" /db_xref="TAIR:AT3G10310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T5B8" /translation="MEYVTRTGFHDLNLASRKAEEAALRRYVAVAWLETLVGPLGISS QPSEKEFISCLRNGLILCNVINKIQPGAVPKVVESNSHAQSLTREFQPPPAYQYFENV RNFLVAIEELKLPAFEACDLERDNLEAGSAAKVVDCILALKSYHEYKQINCGNGNGYY KLTRSPMVMHSATKIHSRSSSESCRRLEMSAICDKQPTSNGEIQKLEGTIVKVLADYM ADTKENVDDNLLGSFHERNPDSVKLLKKMILSCLDEQLQDKFPELKSVFKGILKESNG STLHSTPMALEDVSSFGHFQGSRAGTKKANRNHRHLLKMQEKELLDLKALLSTTKREF EHLQLQLQVDLKDLGSQVEEMSTAALQYYKVVEENRKLYNMVQDLKGNIRVFCRIRPA FCAGTRNAIDFIGEDGSLVILDPLKPQKDGRKVFQFNRVFGPSATQDDVFKDTQPLIR SVMDGYNVCIFAYGQTGSGKTYTMSGPSGGSTEDLGINYLALNDLFEISNQRKDIISY EIQVQMVEIYNEQIRDLLSENSSSTKLEIHSCPRDNGLSLPDATMHTVKSASDVLNLM KFGEVNRVVCSTALNNRSSRSHSILTVHVHGKDASGNMLRSCLHLVDLAGSERVDKSE VTGDRLKEAQYINKSLSCLGDVITALAQKNTHTPYRNSKLTLLLQDSLGGHAKTLMFA HVSPEGDSFGETISTLKFAQRVSTVELGAARLNKESSEVMQLKEQIENLKKALANKEA QSTLSYKIKEPKSPFEKQKATIEKTPPRTRRLGIENGSTKKSEKAMNCEDRKGPKTPS VPTRARRLSLEGPRYVKKDNSQINVSEDVSKSLHASTVSVQKYSEFQEAEAVTKQFGD LSSGSSIMDVYFSKAPRSPASSSFQKQAQKVDCRTQIPRLQLPKTPEPQVLARNDIQA VMQSEHSESRMTIGKGSQIRKSLRSTIGKLISGSEKRNLQNSVELKSPIMEESTISDV KLPLTANARAMRRQSLTGIQTSGSDRSRRSSLGGKPTDSSTTPSSNRNAKTPPPVHPS TKTTKRWL" CDS join(26959197..26959263,26959478..26959635, 26959729..26959875,26959976..26960225,26960687..26960778, 26960901..26960972,26961372..26961473,26961947..26962021, 26962669..26962750,26963157..26963252,26963339..26963512, 26963608..26963714,26964009..26964128,26964248..26964456, 26964586..26964836,26965112..26965275,26965711..26966381, 26966675..26966856,26966982..26967064) /locus_tag="TCM_024583" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29775.m000101" /codon_start=1 /product="Kinesin heavy chain, putative isoform 1" /protein_id="EOY09183.1" /db_xref="TAIR:AT3G10310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T5B8" /translation="MEYVTRTGFHDLNLASRKAEEAALRRYVAVAWLETLVGPLGISS QPSEKEFISCLRNGLILCNVINKIQPGAVPKVVESNSHAQSLTREFQPPPAYQYFENV RNFLVAIEELKLPAFEACDLERDNLEAGSAAKVVDCILALKSYHEYKQINCGNGNGYY KLTRSPMVMHSATKIHSRSSSESCRRLEMSAICDKQPTSNGEIQKLEGTIVKVLADYM ADTKENVDDNLLGSFHERNPDSVKLLKKMILSCLDEQLQDKFPELKSVFKGILKESNG STLHSTPMALEDVSSFGHFQGSRAGTKKANRNHRHLLKMQEKELLDLKALLSTTKREF EHLQLQLQVDLKDLGSQVEEMSTAALQYYKVVEENRKLYNMVQDLKGNIRVFCRIRPA FCAGTRNAIDFIGEDGSLVILDPLKPQKDGRKVFQFNRVFGPSATQDDVFKDTQPLIR SVMDGYNVCIFAYGQTGSGKTYTMSGPSGGSTEDLGINYLALNDLFEISNQRKDIISY EIQVQMMFFSCKNFGNLNVHKLEIHSCPRDNGLSLPDATMHTVKSASDVLNLMKFGEV NRVVCSTALNNRSSRSHSILTVHVHGKDASGNMLRSCLHLVDLAGSERVDKSEVTGDR LKEAQYINKSLSCLGDVITALAQKNTHTPYRNSKLTLLLQDSLGGHAKTLMFAHVSPE GDSFGETISTLKFAQRVSTVELGAARLNKESSEVMQLKEQIENLKKALANKEAQSTLS YKIKEPKSPFEKQKATIEKTPPRTRRLGIENGSTKKSEKAMNCEDRKGPKTPSVPTRA RRLSLEGPRYVKKDNSQINVSEDVSKSLHASTVSVQKYSEFQEAEAVTKQFGDLSSGS SIMDVYFSKAPRSPASSSFQKQAQKVDCRTQIPRLQLPKTPEPQVLARNDIQAVMQSE HSESRMTIGKGSQIRKSLRSTIGKLISGSEKRNLQNSVELKSPIMEESTISDVKLPLT ANARAMRRQSLTGIQTSGSDRSRRSSLGGKPTDSSTTPSSNRNAKTPPPVHPSTKTTK RWL" gene complement(26968324..26970992) /locus_tag="TCM_024584" /note="dbxref CacaoGD:Thecc1EG024584" mRNA complement(join(26968324..26969981,26970277..26970354, 26970445..26970992)) /locus_tag="TCM_024584" /product="JHL06B08.8 protein" /inference="alignment:exonerate-protein:2:frave:gene02435" /inference="similar to AA sequence:ricco:29775.m000100" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5789t2" CDS complement(join(26968669..26969981,26970277..26970354, 26970445..26970646)) /locus_tag="TCM_024584" /note="dbxref ricco:29775.m000100" /codon_start=1 /product="JHL06B08.8 protein" /protein_id="EOY09187.1" /db_xref="TAIR:AT2G41640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E6NU96" /translation="MGHYQRYNQLKKGGDEEAGTLVFVWTNPGYYRRRRPKLFSILLL SLLSCSFILAPYFFSSSSALSHLYSFGVQNEGLDGDTAVKAPLCSSISNGTICCDRSH LRSDICFMKGDVRTHSPSSSVFLYSSKNSDGFINYVSSIVDDGEEEEDDELQHEKIKP YTRKWETSIMDTIEELDLISKRGNLGVHHPCDVVHNVPAVFFSTGGYTGNVYHEFNDG IVPLYITSQHFNKKVVFVILEYHNWWVMKYGDILSHLSNYPTIDFSGDNRTHCFTEAI VGLRIHDELTVDSSLMNGNKSIVDFRNLLDRAYWPRIRGLIQDEEREAQEKKISLRPT SGSASDIGKKVQYQPRRPKLVILSRDGSRAITNENMLVKTAEEIGFQVQVLRPERTTE LAKIYRVLNSSDVMIGVHGAAMTHFLFMKPGSVFIQVIPLGTDWAAETYYGEPARKLH LKYIGYKIMPRESSLFDEYDRDDPVLTNPSSLTKKGWQYTKKIYLDGQTVTLDLIRFR TRLVRAYDHITGMHRRSRLQSH" mobile_element 26972367..26972464 /note="source:CACAO_M_S_E16386_F9_scaffold_2 2050 2144" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 26981563..26985639 /locus_tag="TCM_024585" /note="dbxref CacaoGD:Thecc1EG024585" mRNA join(26981563..26981727,26982664..26982866, 26983496..26984206,26984331..26984399,26984515..26985639) /locus_tag="TCM_024585" /product="RNA-binding family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s10420.1" /inference="similar to AA sequence:Phytozome:POPTR_0005s10420.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Newbler:10:TSA:cgbaL_g14444t00001" mRNA join(26982704..26982866,26983496..26985047) /locus_tag="TCM_024585" /product="RNA-binding family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s10420.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040707t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s10420.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01418t00001; inference alignment:Newbler:10:TSA:cgbaL_g14444t00001; inference alignment:Newbler:10:TSA:cgbaP1_g05007t00001" CDS join(26982850..26982866,26983496..26984206, 26984331..26984399,26984515..26984809) /locus_tag="TCM_024585" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="RNA-binding family protein isoform 1" /protein_id="EOY09188.1" /db_xref="Phytozome:POPTR_0005s10420.1" /db_xref="TAIR:AT5G66010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H670" /translation="MYGSRGAMLGSGGVSDGYEVGSKRQRMMESNPYFAVSSGMSSYQ PYSYGGGFQPPAFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFSGEAFVL FAGSMQVEFALQRDRQNMGRRYVEVFRCKRQDYYHAVAAEVNYEGIYDNDFHGSPPPS RAKRYNDKDQMEYTEILKMRGLPFSVKKPEIVEFFGDFKIVEDRIHIACRPDGKATGE AYVEFASVEEAKRAMCKDKMTIGSRRLCMFPKISWITVLCDARKSPIRFMSVCWGSVL ISAHYSFWNCHQIKEKASTMEHYVIALQVVPVTRARSGTGSKFTPKVTHFYRLTVGPM KDTIWNSWVKRHSSTPKRPKPNSDVKALT" CDS join(26982850..26982866,26983496..26984273) /locus_tag="TCM_024585" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG040707t1" /codon_start=1 /product="RNA-binding family protein isoform 2" /protein_id="EOY09189.1" /db_xref="Phytozome:POPTR_0005s10420.1" /db_xref="TAIR:AT5G66010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H670" /translation="MYGSRGAMLGSGGVSDGYEVGSKRQRMMESNPYFAVSSGMSSYQ PYSYGGGFQPPAFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFSGEAFVL FAGSMQVEFALQRDRQNMGRRYVEVFRCKRQDYYHAVAAEVNYEGIYDNDFHGSPPPS RAKRYNDKDQMEYTEILKMRGLPFSVKKPEIVEFFGDFKIVEDRIHIACRPDGKATGE AYVEFASVEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRSRQ" mobile_element 26988451..26992720 /note="source:CACAO_Mutator_E1155_scaffold_5 1 4270" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(26992819..26997074) /note="source:CACAO_Mutator_E1155_scaffold_5 4 4269" /mobile_element_type="transposon:TIR/Mutator" mobile_element 26997463..27000411 /note="source:CACAO_M_E43957_F15_scaffold_5 1 3037" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 27001979..27007821 /locus_tag="TCM_024589" /note="dbxref CacaoGD:Thecc1EG024589" mRNA join(27001979..27002650,27003497..27003521, 27005549..27005575,27005663..27005678,27005771..27005901, 27006077..27006165,27007092..27007168,27007439..>27007466) /locus_tag="TCM_024589" /product="Cyclin-like family protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene02431" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040769t1" /inference="similar to AA sequence:frave:gene02431" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc269t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14041t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc277t6" mRNA join(27002102..27002650,27003497..27003521, 27005549..27005678,27005771..27005901,27006077..27006165, 27007092..27007168,27007439..27007821) /locus_tag="TCM_024589" /product="Cyclin-like family protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene02431" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040769t1" /inference="similar to AA sequence:frave:gene02431" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14041t1" CDS join(27002298..27002650,27003497..27003521, 27005549..27005678,27005771..27005901,27006077..27006165, 27007092..27007168,27007439..27007572) /locus_tag="TCM_024589" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene02431; paralog of Thecc1EG040769t1" /codon_start=1 /product="Cyclin-like family protein isoform 1" /protein_id="EOY09190.1" /db_xref="TAIR:AT3G10330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P48512" /translation="MADAFCSDCKRHTEVVFDHSAGDTVCSECGLVLESHSIDETSEW RTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPD RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACR QEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCS NLGMNNQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLRDISVATGV AEGTIRNSYKDLYPHVSKIIPNWYAKGEDLKNLCSP" CDS join(27002298..27002650,27003497..27003521, 27005549..27005575,27005663..27005678,27005771..27005901, 27006077..27006165,27007092..27007168,27007439..>27007464) /locus_tag="TCM_024589" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene02431; paralog of Thecc1EG040769t1" /codon_start=1 /product="Cyclin-like family protein isoform 2" /protein_id="EOY09191.1" /db_xref="TAIR:AT3G10330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P48512" /translation="MADAFCSDCKRHTEVVFDHSAGDTVCSECGLVLESHSIDETSEW RTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPD RGLILAFKTIATMSDRLGLVATIKDRANEIYKKPRTVKEICSVANGATKKEIGRAKEY IVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNQAVKAAQEAVQKSEEFDIRRSPI SIAAAVIYIITQLSDDKKPLRDISVATGVA" mobile_element 27017065..27017134 /note="source:scaffold_9_CACTA_0929 10095 10150" /mobile_element_type="transposon:TIR/CACTA" mobile_element 27024492..27025852 /note="source:CACAO_M_E52239_F256_scaffold_7 19810 21110" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27026946..27026993) /note="source:CACAO_M_E1841_F5_scaffold_1 8336 8383" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27032675..27032823) /note="source:INTACT189_F49_scaffold_5-int 17864 18012" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27038568..27043682 /note="source:INTACT561_F253_scaffold_5-int 346 4443" /mobile_element_type="retrotransposon:LTR/Copia" gene 27042318..27043195 /locus_tag="TCM_024592" /note="dbxref CacaoGD:Thecc1EG024592" mRNA 27042318..27043195 /locus_tag="TCM_024592" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009908t1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.59 coverage" CDS 27042388..27042912 /locus_tag="TCM_024592" /note="paralog of Thecc1EG009908t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09192.1" /translation="MWYQRLSKYLIKEGYKNDLVCPCMCIKKSYTRFVMIIVYVDDMN LIGTSEELSKIAKYLKREFEVKDLGKTKLCLSLKLKHKTNGILVHQSAYIDRWLICFN MDKTHPLSTPMVVRSLNPQKDLFHPKKPNKEIFDPKVPQLNAIRALMYLTQRTRSDIA FAINLLACCSFEPT" mobile_element 27043678..27043823 /note="source:INTACT561_F253_scaffold_5-int 4310 4458" /mobile_element_type="retrotransposon:LTR/Copia" gene 27045859..27046590 /locus_tag="TCM_024593" /note="dbxref CacaoGD:Thecc1EG024593" mRNA join(27045859..27046091,27046300..27046590) /locus_tag="TCM_024593" /product="Early nodulin-like protein 22" /inference="alignment:exonerate- protein:2:ricco:30116.m000378" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027301t1" /inference="similar to AA sequence:ricco:30116.m000378" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.32 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5822t1" CDS join(27045971..27046091,27046300..27046523) /locus_tag="TCM_024593" /note="dbxref ricco:30116.m000378; paralog of Thecc1EG027301t1" /codon_start=1 /product="Early nodulin-like protein 22" /protein_id="EOY09193.1" /translation="MRPFIQRQQPIWLEMIMVRNHQFSLEGWTRGKNFLTSDILEFIY DEQLFNVVVVDKNGHDTCTVNDGAMEFDSGDDKIPLAFGANYFICSTQPDLCAAIIKM AINATTPPPSSK" mobile_element 27051525..27054122 /note="source:CACAO_M_E43958_F53_scaffold_5 1 2598" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 27051964..27058446 /locus_tag="TCM_024594" /note="dbxref CacaoGD:Thecc1EG024594" mRNA join(27051964..27052286,27056054..27057780, 27058308..27058446) /locus_tag="TCM_024594" /product="UDP-glucosyltransferase, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033243001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024595t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05770.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5832t1" CDS join(27056288..27057780,27058308..27058314) /locus_tag="TCM_024594" /note="paralog of Thecc1EG024595t1" /codon_start=1 /product="UDP-glucosyltransferase, putative" /protein_id="EOY09194.1" /db_xref="Phytozome:POPTR_0016s05770.1" /db_xref="TAIR:AT4G36770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T1L8" /translation="MLTTLYINPTEAGFVHIHQRIHIAISGTQRDSSAFFPKMPNQEN SVAVVMVPFPAQGHLNQLLHLSRIVLSYGIPVHYVATPTHNRQAKIRAHGWDPVATAN FHFHDCQVPPFLSPPPDPSSAIKFPSHLQPCFDACWHLCQPVTELLRMLSSQARKVIV IHDSMMGSVVQEVGSIANAESYTFHTVSAFSLFFYVWESIGKPEVNAEMPDEGDVPSL EGCFTKDFLEFIALQFQYLRDNAGIIYNTSKVIEGPYLELLGGIMRGKQHWALGPFNP VRIPGKNSSASRHFCLEWLDKQATNSVLYVSFGTTTAMDDEQIKELAIGLRKSNQKFI WVLRDADKGDVFNGEVRRPELPQGYEDSVKDTGLVVRDWAPQLEILAHPATGGFVSHC GWNSCMESITMGVPIGAWPMHSDQPRNAVLITKLLKVGIAVKDWERRDGTVTAPIVED AVKRLMASKEGDEMRKRAAEVGGAVRQSVAEGEVSQKERDSFIAHITRK" mobile_element complement(27058904..27059666) /note="source:INTACT409_F10_scaffold_9-int 4131 4943" /mobile_element_type="retrotransposon:LTR/Copia" gene 27062714..27064856 /locus_tag="TCM_024595" /note="dbxref CacaoGD:Thecc1EG024595" mRNA 27062714..27064856 /locus_tag="TCM_024595" /product="UDP-glucosyltransferase, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400032681" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024594t1" /inference="similar to AA sequence:frave:gene21990" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1155t1" CDS 27063109..27064539 /locus_tag="TCM_024595" /note="dbxref frave:gene21990; paralog of Thecc1EG024594t1" /codon_start=1 /product="UDP-glucosyltransferase, putative" /protein_id="EOY09195.1" /db_xref="TAIR:AT2G15490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T1L8" /translation="MANHTSHQSYGSINHKQAPVAVIVVPFPGQSHLNQLLQLCCLLS SHKIPVHYVCSNIHNRQVKLRAHGLNSSQISLLTFHDLAIPPFISPPPNPRATTKFPT HLQPSFEAYLHLRHPVGALVSELSQSAERIIIIHDSVIASIIQDAASIPNAEIYAFQS ISPFTLFYNIWEARGKPFQLEAEVAEIQNKLPSLDGCFSSEFVNFVTYQYQFMNFQAG ELYNTCRLIDGTYINLLAKLQTNVNRKQWAIGPLNPLKIHEQSNPTRRHKCLEWLDKQ TPKSVLYICFGSSTSMPDDQINELAIGLEQSKTKFIWVLRDADKGDISTEVRQLKLPE AFEARTERSGMVLRDWAPQLEILGHPSTGGFMSHCGWNSCMESISMGVPIAAWPMHSD QPRNTVLVTQVLQIGLVVKDRQRMEDKVTSSDIKEAVRRLMASKEGETMRKRAEELGE AVREQSAAQGGVSRVELESFIAHITR" gene 27064918..27066730 /locus_tag="TCM_024596" /note="dbxref CacaoGD:Thecc1EG024596" mRNA join(27064918..27064978,27065693..27066302, 27066542..27066730) /locus_tag="TCM_024596" /product="Uncharacterized protein" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400066256" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.25 coverage" CDS join(27066066..27066302,27066542..27066661) /locus_tag="TCM_024596" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09196.1" /db_xref="Phytozome:PGSC0003DMP400066256" /translation="MVLKRKFWHTHQTGGFMSHCGWNSYMENIRMGVPIAAWPMHSDQ PMNALLVKLLLKIELIVWEWAPRELKVTSSAIKERVQCCLYRKVLESLLTMKVVGNFP VRNSTTRLFYLWCSYP" gene complement(27067308..27071903) /locus_tag="TCM_024598" /note="dbxref CacaoGD:Thecc1EG024598" mRNA complement(join(27067308..27067857,27069500..27069898, 27069985..27070116,27070710..27070796,27071581..27071903)) /locus_tag="TCM_024598" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033242001" /inference="similar to AA sequence:ricco:29588.m000862" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:PASA:2:TSA:puevd3b023788t1a2; alternateUTRof:Thecc1EG024598t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5843t5" mRNA complement(join(27067308..27067857,27069500..27069898, 27069985..27070116,27070701..27070796,27071581..27071903)) /locus_tag="TCM_024598" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033242001" /inference="similar to AA sequence:ricco:29588.m000862" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:PASA:2:TSA:puevd3b023788t1a3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5843t5" mRNA complement(join(27067429..27067857,27069500..27069898, 27069985..27070116,27070661..27070796,27071581..27071621)) /locus_tag="TCM_024598" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033242001" /inference="similar to AA sequence:Phytozome:GSVIVT01033242001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g09801t00001; inference alignment:Newbler:10:TSA:cgbaP2_g09801t00001" CDS complement(join(27067719..27067857,27069500..27069898, 27069985..27070116,27070661..27070779)) /locus_tag="TCM_024598" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY09197.1" /db_xref="Phytozome:GSVIVT01033242001" /db_xref="TAIR:AT3G57360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MWZ6" /translation="MDAKDWESCSDNEIYLQDRSEDDGEESYYSSGFLSKLQFRKDIS KARWINDLAMAEVVEKKGKMWVTMGIVRSGKTYCLIEETLFLIEIGALHLLDENGICL SLKEVYEKLSDESGCYWELFEIYRHLKSLGYIVGRHGIPWSVKGLKIKTGTCSLQGSE ERNELLEMEPKDTSIIIDLFDNMQINEVSPAFDVYLPNSRFRKSSPGDPSFFLYLSRG NPPSKVEIEALERKQGVVPLKFCHVENGRVSFFSFDRVELAVLP" CDS complement(join(27067719..27067857,27069500..27069898, 27069985..27070076)) /locus_tag="TCM_024598" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29588.m000862" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY09198.1" /db_xref="TAIR:AT3G57360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MWZ6" /translation="MAEVVEKKGKMWVTMGIVRSGKTYCLIEETLFLIEIGALHLLDE NGICLSLKEVYEKLSDESGCYWELFEIYRHLKSLGYIVGRHGIPWSVKGLKIKTGTCS LQGSEERNELLEMEPKDTSIIIDLFDNMQINEVSPAFDVYLPNSRFRKSSPGDPSFFL YLSRGNPPSKVEIEALERKQGVVPLKFCHVENGRVSFFSFDRVELAVLP" CDS complement(join(27067719..27067857,27069500..27069898, 27069985..27070076)) /locus_tag="TCM_024598" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29588.m000862" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY09199.1" /db_xref="TAIR:AT3G57360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MWZ6" /translation="MAEVVEKKGKMWVTMGIVRSGKTYCLIEETLFLIEIGALHLLDE NGICLSLKEVYEKLSDESGCYWELFEIYRHLKSLGYIVGRHGIPWSVKGLKIKTGTCS LQGSEERNELLEMEPKDTSIIIDLFDNMQINEVSPAFDVYLPNSRFRKSSPGDPSFFL YLSRGNPPSKVEIEALERKQGVVPLKFCHVENGRVSFFSFDRVELAVLP" mobile_element 27071573..27071761 /note="source:scaffold_2_CACTA_0276 15012 15216" /mobile_element_type="transposon:TIR/CACTA" gene complement(27071930..27082443) /locus_tag="TCM_024599" /note="dbxref CacaoGD:Thecc1EG024599" mRNA complement(join(27071930..27072925,27073067..27073358, 27073972..27074153,27074523..27075431,27075502..27075588, 27076348..27076431,27076523..27076576,27076843..27076977, 27077054..27077149,27077475..27077744,27078047..27078136, 27079209..27079268,27079697..27079763,27079995..27080086, 27082150..27082443)) /locus_tag="TCM_024599" /product="Nucleoporin interacting component (Nup93/Nic96-like) family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s01060.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033240001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5928t2" mRNA complement(join(27072341..27072927,27074599..27075431, 27075502..27075588,27076348..27076431,27076523..27076576, 27076843..27076977,27077054..27077149,27077475..27077744, 27078047..27078136,27079209..27079268,27079697..27079763, 27079995..27080086,27082150..27082387)) /locus_tag="TCM_024599" /product="Nucleoporin interacting component (Nup93/Nic96-like) family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s01060.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s05790.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc217t7_C1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5928t2" CDS complement(join(27072848..27072925,27073067..27073358, 27073972..27074153,27074523..27075431,27075502..27075588, 27076348..27076431,27076523..27076576,27076843..27076977, 27077054..27077149,27077475..27077744,27078047..27078136, 27079209..27079268,27079697..27079763,27079995..27080086, 27082150..27082251)) /locus_tag="TCM_024599" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Nucleoporin interacting component (Nup93/Nic96-like) family protein isoform 1" /protein_id="EOY09200.1" /db_xref="Phytozome:GSVIVT01033240001" /db_xref="TAIR:AT2G41620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22224" /translation="MASEQDMSSWTDLLHSSSKLLEQAAPSAQFPPLQRNLDQLEALS KKLKAKTLRTEAPSRSIAATRLLAREGINAEQLTRDLKSFELKTTFEDVFPAEATSVE EYLQQVHEIAMVSAIQEAQKDNLRSFNDYMMKVLEEDWQNEKRDFLQSLSRISTLPKT NMLDKSITGARSGQIVSMASSPQVSSGPSGMELLPLANKPVVEKKVSVYAEVVRNLNN ARQQGLPFKPATAFKAAYESLGTEASSGKSVNMQKMWHLIQTLMGEDSTMQRSVSRKM SLVIGARRHLEWGHEKYIMDTVQSHPAQAALGGAVGNLHRVHAFLRIRLRDYGILDFD AGDARRQPPVDTTWQQIYFCLRTGYYDEARQVAQSSRASHQFAPLLTEWINSGGMVPA DIAVAAAEECEKMFRMGDRVGRAAYDKKKLLLYAIISGSRRQVDRLLRDLPSLFSTIE DFLWFILSAVRDLPGGTSSVILNEGLVPYSLDDLQAYLNKFEPSYYTKNGKDPLVYPY VLLLSIQLLPAVSYLSKETGDEGYNIDAAHIAIVLADNGVLYEGAGAGAGKKLGMMDA YAEASSIIRQYGSMYIRLGNLQMALEYYAQAAAAVGGGQVSWTGRGNVDQQRQRHLML KQLFTELFLRDGGIYLLLGSRGAGEEGELGRFLTDHKARQQFLLEAARHCQDAGLYEK SIEIQKRVGAFSMALDTINKCLSEAICALSCGRLDGESRTAGLIHSGNEILETFKYYP EVSLQEREHVLEQQTVLRQLEAILSIHKLTRLGQYLDAVREVAKLPFLPLDPRAPDVT SNAFENLSPHVQACVPDLLKVALTCLENVTDTDGSLCAMRAKIATFLANNMHQNWPRD LYETVARRL" CDS complement(join(27072903..27072927,27074599..27075431, 27075502..27075588,27076348..27076431,27076523..27076576, 27076843..27076977,27077054..27077149,27077475..27077744, 27078047..27078136,27079209..27079268,27079697..27079763, 27079995..27080086,27082150..27082251)) /locus_tag="TCM_024599" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Nucleoporin interacting component (Nup93/Nic96-like) family protein isoform 2" /protein_id="EOY09201.1" /db_xref="Phytozome:POPTR_0015s05790.1" /db_xref="TAIR:AT2G41620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22224" /translation="MASEQDMSSWTDLLHSSSKLLEQAAPSAQFPPLQRNLDQLEALS KKLKAKTLRTEAPSRSIAATRLLAREGINAEQLTRDLKSFELKTTFEDVFPAEATSVE EYLQQVHEIAMVSAIQEAQKDNLRSFNDYMMKVLEEDWQNEKRDFLQSLSRISTLPKT NMLDKSITGARSGQIVSMASSPQVSSGPSGMELLPLANKPVVEKKVSVYAEVVRNLNN ARQQGLPFKPATAFKAAYESLGTEASSGKSVNMQKMWHLIQTLMGEDSTMQRSVSRKM SLVIGARRHLEWGHEKYIMDTVQSHPAQAALGGAVGNLHRVHAFLRIRLRDYGILDFD AGDARRQPPVDTTWQQIYFCLRTGYYDEARQVAQSSRASHQFAPLLTEWINSGGMVPA DIAVAAAEECEKMFRMGDRVGRAAYDKKKLLLYAIISGSRRQVDRLLRDLPSLFSTIE DFLWFILSAVRDLPGGTSSVILNEGLVPYSLDDLQAYLNKFEPSYYTKNGKDPLVYPY VLLLSIQLLPAVSYLSKETGDEGYNIDAAHIAIVLADNGVLYEGAGAGAGKKLGMMDA YAEASSIIRQYGSMYIRLGNLQMALEYYAQAAAAVGGGQVSWTGRGNVDQQRQRHLML KQLFTELFLRDGGIYLLLGSRGAGEEGELGRFLDCNLPCK" gene 27083319..27085963 /locus_tag="TCM_024600" /note="dbxref CacaoGD:Thecc1EG024600" mRNA join(27083319..27083801,27084602..27084933, 27085676..27085963) /locus_tag="TCM_024600" /product="JHL06B08.3 protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s04490.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033239001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g08148t00001" CDS join(27083688..27083801,27084602..27084933, 27085676..27085841) /locus_tag="TCM_024600" /codon_start=1 /product="JHL06B08.3 protein, putative" /protein_id="EOY09202.1" /db_xref="Phytozome:GSVIVT01033239001" /db_xref="TAIR:AT2G41600.5" /db_xref="UniProtKB/TrEMBL:UniRef50_E6NU92" /translation="MTRATQILREGRKALEDFNLLKVLQSEISHELSSNSFQDIKSGS LGDFVLDWNSAQSHDVVLRRKSESGEEVAVSALLGQETRDSEGKFPREVLMKVCVRKP GLSSMLQFDCGVSEKDVHRSDFNIHSAYYLQSSTIPNSSIYRGPSFSSLDPQLQDAFK EYLLARGIGENLTNFLLLTLHKKEQGQYVNWLQILESFVAKDE" mobile_element 27086171..27086311 /note="source:INTACT44_F119_scaffold_6-int 1 158" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(27087530..27088694) /locus_tag="TCM_024601" /note="dbxref CacaoGD:Thecc1EG024601" mRNA complement(27087530..27088694) /locus_tag="TCM_024601" /product="H0502G05.11 protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019346t1" /note="quality class is medium-utrpoor, express is weak, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.15 coverage" CDS complement(27088196..27088462) /locus_tag="TCM_024601" /note="paralog of Thecc1EG019346t1" /codon_start=1 /product="H0502G05.11 protein" /protein_id="EOY09203.1" /translation="MLSTTTQGLVTKEELNKLFDHKNKSLNFLEFNLKLPYPANVTIE SYLNNYTSLKFKQFNGHNRDARKHVMKFVETFGVTGLDDDLKLK" mobile_element complement(27089753..27089808) /note="source:CACAO_M_S_E90022_F9_scaffold_8 3106 3168" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27090613..27094738 /note="source:CACAO_M_S_E173_F215_scaffold_1 1490 5682" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27095440..27095651 /note="source:INTACT135F_F90_scaffold_2-int 12864 13075" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 27095635..27096374 /note="source:INTACT135F_F90_scaffold_2-int 13320 14004" /mobile_element_type="retrotransposon:LTR/Copia" gene 27099011..27107409 /locus_tag="TCM_024602" /note="dbxref CacaoGD:Thecc1EG024602" mRNA join(27099011..27099468,27101285..27101339, 27101445..27103384,27103470..27103628,27104880..27105051, 27105151..27105449,27106111..27107409) /locus_tag="TCM_024602" /product="Autoinhibited Ca2+-ATPase 11 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033238001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042363t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033238001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5875t2" CDS join(27099292..27099468,27101285..27101339, 27101445..27103384,27103470..27103628,27104880..27105051, 27105151..27105449,27106111..27106419) /locus_tag="TCM_024602" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042363t1" /codon_start=1 /product="Autoinhibited Ca2+-ATPase 11 isoform 1" /protein_id="EOY09204.1" /db_xref="Phytozome:GSVIVT01033238001" /db_xref="TAIR:AT3G57330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22218" /translation="MDKLLNLKEFEVEPKHSSEEALRRWRKLVTIVKNPRRRFRMIAN LDKRSEAEQQKLKIKEKIRVALIVQKAALQFIDAAGPPEYKLTNEVREANFGIEPDEL ASIVHGHDIKRLKLHGGVEGIARKITVSPDEGVCSDNISTRQKIYGLNCYTEKPPRTF WMFVWDALQDLTLIILMVCAVISIGVGLATEGWPKGMYDGSGILLTLILVVSVTAISD YRQSLQFRELDREKKKIYVQVTRDGRRQQVSIYDLVIGDVVHLGIGDQVPADGLFISG YSLQIDESSLSGEIDPVDIYEQHPFLLSGTKVRDGSGKMLVTAVGMRTEWGKLMETLN EGGEDETPLQVKLNGVATIIGKIGLTFAVLTFVVLTVRFLVEKALQNEFTNWSSTDAL TLLNYFAIAVTIIVVAVPEGLPLAVTLSLAFAMKQLMDERALVRHLSACETMGSASCI CTDKTGTLTTNHMVVNKIWICEKIKDISGNESKNFDELEISEGVFSILLCAIFLNTCA EVVKDEKGKNSILGTPTETALLEFGLLLGGDYDAQQRQVKILKVKPFNSDRKKMSVLV ALPEGGIRAFCKGAAEIVLSMCDKVADYSGELVPLSEERVRNITDVINGFASEALRTL CLAFKDVDDTYPENSIPEGDYTLIAVVGIKDPVRPGVKEAVQTCLAAGITVHMVTGDN IYTAKAIAKECGILTADENAIEGPEFSRKSLDEMRDIIPNIQVMARSKPMDKLNLVNQ LRNMFGEVVAVTGDGTNDAPALHQSDIGLAMGIAGTEVAKENADVIVMDDNFATIVNV AKWGRAVYINIQKFVQFQLTVNVVALVINFVSACISGSAPLTAVQLLWVNMIMDTLGA LALATEPPNDALMKRPPVPRGASFITKPMWRNIIGQSIYQLIVLGVLKFDGKQLLRLT GSDATTVLNTVIFNSFVFCQVFNEINSREIKKINIFRGMFDSWIFIAVMVSTIAFQVV IVEYLGTFASTVPLSWQLWVVCILIGSVSLIVAVILKCIPVERAVVKPKHPDGYDALP SGPGLA" mobile_element 27099573..27099630 /note="source:scaffold_8_CACTA_0856 916 973" /mobile_element_type="transposon:TIR/CACTA" mRNA join(27100321..27100779,27101285..27101339, 27101445..27103384,27103470..27103628,27104880..27105051, 27105151..27105449,27106111..27107313) /locus_tag="TCM_024602" /product="Autoinhibited Ca2+-ATPase 11 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033238001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042363t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s04240.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc924t7; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5875t2" CDS join(27101696..27103384,27103470..27103628, 27104880..27105051,27105151..27105449,27106111..27106419) /locus_tag="TCM_024602" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042363t1" /codon_start=1 /product="Autoinhibited Ca2+-ATPase 11 isoform 2" /protein_id="EOY09205.1" /db_xref="Phytozome:POPTR_0016s04240.1" /db_xref="TAIR:AT3G57330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B8H7" /translation="MFVWDALQDLTLIILMVCAVISIGVGLATEGWPKGMYDGSGILL TLILVVSVTAISDYRQSLQFRELDREKKKIYVQVTRDGRRQQVSIYDLVIGDVVHLGI GDQVPADGLFISGYSLQIDESSLSGEIDPVDIYEQHPFLLSGTKVRDGSGKMLVTAVG MRTEWGKLMETLNEGGEDETPLQVKLNGVATIIGKIGLTFAVLTFVVLTVRFLVEKAL QNEFTNWSSTDALTLLNYFAIAVTIIVVAVPEGLPLAVTLSLAFAMKQLMDERALVRH LSACETMGSASCICTDKTGTLTTNHMVVNKIWICEKIKDISGNESKNFDELEISEGVF SILLCAIFLNTCAEVVKDEKGKNSILGTPTETALLEFGLLLGGDYDAQQRQVKILKVK PFNSDRKKMSVLVALPEGGIRAFCKGAAEIVLSMCDKVADYSGELVPLSEERVRNITD VINGFASEALRTLCLAFKDVDDTYPENSIPEGDYTLIAVVGIKDPVRPGVKEAVQTCL AAGITVHMVTGDNIYTAKAIAKECGILTADENAIEGPEFSRKSLDEMRDIIPNIQVMA RSKPMDKLNLVNQLRNMFGEVVAVTGDGTNDAPALHQSDIGLAMGIAGTEVAKENADV IVMDDNFATIVNVAKWGRAVYINIQKFVQFQLTVNVVALVINFVSACISGSAPLTAVQ LLWVNMIMDTLGALALATEPPNDALMKRPPVPRGASFITKPMWRNIIGQSIYQLIVLG VLKFDGKQLLRLTGSDATTVLNTVIFNSFVFCQVFNEINSREIKKINIFRGMFDSWIF IAVMVSTIAFQVVIVEYLGTFASTVPLSWQLWVVCILIGSVSLIVAVILKCIPVERAV VKPKHPDGYDALPSGPGLA" gene complement(27107359..27112400) /locus_tag="TCM_024604" /note="dbxref CacaoGD:Thecc1EG024604" mRNA complement(join(27107359..27107899,27108637..27108865, 27110016..27110119,27111771..27112400)) /locus_tag="TCM_024604" /product="Nucleotide-sugar transporter family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s04250.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042615t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s04250.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Newbler:10:TSA:cgbaL_g09371t00001" CDS complement(join(27107753..27107899,27108637..27108865, 27110016..27110119,27111771..27112244)) /locus_tag="TCM_024604" /note="paralog of Thecc1EG042615t1" /codon_start=1 /product="Nucleotide-sugar transporter family protein" /protein_id="EOY09206.1" /db_xref="Phytozome:POPTR_0016s04250.1" /db_xref="TAIR:AT5G04160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SS40" /translation="MSSTQPPSSSPSSKKQTLFITSLVVLWYSSNIGVLLLNKYLLSN YGFKFPIFLTMCHMSACAFLSYISIVFMKLVPLQPIKSRPQLLKIATLSVVFCCSVVG GNISLRYLPVSFNQAVGATTPFFTALFAYLMTFKREAWVTYAALVPVVAGVVIASGGE PGFHWFGFIMCISATAARAFKSVLQGILLSSEGEKLNSMNLLLYMSPIAVLVLVPAAL VMEPNVLEVTLSLGRQHRYMWLLLLVNSTMAYSANLSNFLVTKHTSALTLQVLGNAKG AVAVVISILLFRNPVTVVGIAGYTMTVLGVVAYGEAKRRFR" mobile_element 27109057..27109144 /note="source:scaffold_10_CACTA_0137 6927 7013" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(27114213..27114453) /note="source:INTACT51_F23_scaffold_9-int 2089 2328" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(27116232..27118698) /note="source:INTACT405F_F91_scaffold_4-int 15649 18091" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 27118699..27122179 /note="source:CACAO_M_E69485_F323_scaffold_9 1 3467" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27122181..27122910) /note="source:INTACT405F_F91_scaffold_4-int 14976 15661" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(27126584..27127248) /locus_tag="TCM_024608" /note="dbxref CacaoGD:Thecc1EG024608" mRNA complement(27126584..27127248) /locus_tag="TCM_024608" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g14780.1" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14016t1" CDS complement(27126609..27127043) /locus_tag="TCM_024608" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09207.1" /translation="MAKLNNLSILVALVSSMVAASMLPSPVAAEVINIAPSPYADGFQ LTIPPEPEPGFYQFLEECTKKMSQKCGQNVVGSIFGDTVTSDECCQELVRMGKTCHDD MVKFFVSLPELKLNASDVYAEGEQVWNDCVSRAASPSPSPSL" mobile_element complement(27129232..27130730) /note="source:CACAO_on_E205_scaffold_7 3721 5206" /mobile_element_type="transposon:TIR/Mutator" mobile_element 27130832..27132204 /note="source:INTACT444_F216_scaffold_4-int 2088 3470" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27132201..27143730) /note="source:INTACT1391F_F387_scaffold_8-int 209 10954" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27143184..27146217) /note="source:CACAO_on_E205_scaffold_7 2146 5186" /mobile_element_type="transposon:TIR/Mutator" gene 27143476..27154712 /locus_tag="TCM_024613" /note="dbxref CacaoGD:Thecc1EG024613" mRNA join(27143476..27144035,27147287..27147511, 27148299..27148355,27148450..27148512,27148625..27148959, 27149535..27149741,27151500..27151721,27152372..27152578, 27152745..27152963,27153138..27154204,27154328..27154712) /locus_tag="TCM_024613" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s04530.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s04530.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04177t00001" CDS join(27148319..27148355,27148450..27148512, 27148625..27148959,27149535..27149741,27151500..27151721, 27152372..27152578,27152745..27152963,27153138..27154178) /locus_tag="TCM_024613" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09208.1" /db_xref="Phytozome:POPTR_0006s04530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9I4" /translation="MACSLWGPSLHEEESRCCIQPGWQCDFYFGYGFDMVEENALNEK SCVQVLRILITKADTEIDELEKDLVLLQSELAWAEHEEWSDICCNTLRAKIDCLDISI RKLRNKDENDIEFYLLMHTEPVEKLNEIVKALLKSFCHGKDEQRQDVVVLDSSCGSPE QSADLHKNQKLRTSDSHFIAKEEFNGPIVTSSKNCTSSKSYTEIEKKKANCSETLATT NVKNVIPHSLAPVADQFDEKKVVTNLDLETTKKQGIKDCGLTLKDKNVIQNSSSKSAQ KRMHEPDRAKVKEPAAQVVNNSGLDASKRSADHLNKKSASRLKIESEEATVHTSISAS DILILDSSSNPRGKRADLSRKVKDEQPANIIAKDFDSVACKQTTGHSNEMKMLCKHDL KVNGCEVQEHYTTTIGKSKITNSCLNFEHKGNILKADKPANAVVKTISPDTLRHATGL NGKGNNSDSRLGAVGQAESLNCDMEQKLCDFAVKSARKRGIKELKFASTEQKEPSNSF FKGEGKRKDSLQVVKRKESPLSDNEHFALTSLLELQDERGKDKTILQMEGNPQLEEVR MAEIAARDDKLVMNLYMRSQRGKLKIVKTTESISASVEEPSLNSKENVSNSSPISKGK RPWKYANNHTLNYSLSGKITKKTVQHSQYEVEDQSMRLNASQNTMSLPQKKCKKFSSV PIFVEIRGSSVQMNISKLHGNLNGSTAKTDISISEASVDGSCIKGVTPQPFDTSNLMK MKLCDLRAIAKAQKLTKYSGLRKEDLVKQLENRFSC" gene complement(27154937..27158089) /locus_tag="TCM_024614" /note="dbxref CacaoGD:Thecc1EG024614" mRNA complement(join(27154937..27155875,27156524..27156623, 27156694..27156785,27156873..27156915,27157712..27158089)) /locus_tag="TCM_024614" /product="MICAL C-terminal-like protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s04540.2" /inference="similar to AA sequence:Phytozome:POPTR_0006s04540.2" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaL_g04333t00001" CDS complement(join(27155826..27155875,27156524..27156623, 27156694..27156785,27156873..27156915,27157712..27157765)) /locus_tag="TCM_024614" /codon_start=1 /product="MICAL C-terminal-like protein, putative" /protein_id="EOY09209.1" /db_xref="Phytozome:POPTR_0006s04540.2" /translation="MASEELLKPFYLRATQAEERLSRLEAVLAGKTDAGNQELSKLIS ELQAKLEDANAETLAEREKAKKLAVENEKLKYRIAHLVQAVSKADQKLESMRGHVSEA TAQRLEKMRL" gene complement(27158332..27164016) /locus_tag="TCM_024615" /note="dbxref CacaoGD:Thecc1EG024615" mRNA complement(join(27158332..27158991,27159322..27159461, 27159995..27160242,27161818..27162039,27163286..27164016)) /locus_tag="TCM_024615" /product="6-phosphogluconate dehydrogenase family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033233001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042365t2" /inference="similar to AA sequence:Phytozome:Glyma10g15900.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05169t00001" CDS complement(join(27158868..27158991,27159322..27159461, 27159995..27160242,27161818..27162039,27163286..27163943)) /locus_tag="TCM_024615" /note="paralog of Thecc1EG042365t2" /codon_start=1 /product="6-phosphogluconate dehydrogenase family protein" /protein_id="EOY09210.1" /db_xref="Phytozome:Glyma10g15900.1" /db_xref="TAIR:AT2G41540.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JFL8" /translation="MVGSIDTLHHSLCSNGSIHNCNGLEEKLDELRRLLGKTDGDPLR IVSVGAGAWGSVFAALLQDSFGQFREKVQIRIWRRPGKTVDRATAEHLFEVINSREDV LRRLIRRCAYLKYVEARLGDRTLFADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDA DIVVNGLPSTETREVFEEISNYWKERITVPIIISLSKGIEAALEPVPHIITPTQMINR ATGVPIDNILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRQPHFIVWDNSDL VTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMIFITHLLAEEPEKLAG PLLADTYVTLLKGRNAWYGQMLAKGELSRDMGDSISGKGMIQGVSAVGAFYELLSQSS LSVLHPEGNKPVAPVELCPILKTLYKILITREKSSQAILQALRDETLNDPRDRIEIAQ SHAFYRPSLLGQP" mobile_element complement(27165612..27165636) /note="source:INTACT616_F52_scaffold_1-int 2947 2970" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27165637..27167577 /note="source:CACAO_M_E10145_F15_scaffold_2 1 1942" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27167350..27170454) /note="source:INTACT584_F15_scaffold_3-int 5549 8653" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27170556..27172972) /note="source:INTACT584_F15_scaffold_3-int 3104 5521" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27172973..27175157 /note="source:CACAO_M_E47954_F15_scaffold_6 1 3102" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27175125..27175162 /note="source:CACAO_M_E3109_F15_scaffold_1 2627 2664" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27178262..27181044 /note="source:CACAO_M_E43967_F87_scaffold_5 1 2783" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27184398..27184892) /note="source:scaffold_5_CACTA_0601 8232 8728" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(27186646..27186903) /note="source:scaffold_5_CACTA_0601 8468 8728" /mobile_element_type="transposon:TIR/CACTA" mobile_element 27186904..27187178 /note="source:scaffold_5_CACTA_0601 8454 8728" /mobile_element_type="transposon:TIR/CACTA" mobile_element 27190518..27191661 /note="source:INTACT215_F33_scaffold_4-int 8034 9177" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27198360..27198809) /note="source:CACAO_M_E12297_F14_scaffold_3 7153 7602" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27199044..27199633) /note="source:INTACT19F_F94_scaffold_1-int 1853 2431" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27199507..27199643 /note="source:INTACT646F_F95_scaffold_5-int 11324 11466" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27201017..27201149 /note="source:scaffold_5_CACTA_0601 7056 7188" /mobile_element_type="transposon:TIR/CACTA" mobile_element 27202266..27202390 /note="source:INTACT222_F33_scaffold_7-int 3731 3855" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27202391..27203520) /note="source:CACAO_M_S_E32248_F87_scaffold_3 1655 2787" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27205322..27205402 /note="source:scaffold_5_CACTA_0601 7563 7643" /mobile_element_type="transposon:TIR/CACTA" gene complement(27208571..27210781) /locus_tag="TCM_024620" /note="dbxref CacaoGD:Thecc1EG024620" mRNA complement(join(27208571..27209599,27209691..27210781)) /locus_tag="TCM_024620" /product="Flotillin-like protein 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0018s02190.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036952t1" /inference="similar to AA sequence:Phytozome:POPTR_0018s02190.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc3873t1" CDS complement(join(27209078..27209599,27209691..27210617)) /locus_tag="TCM_024620" /note="paralog of Thecc1EG036952t1" /codon_start=1 /product="Flotillin-like protein 2" /protein_id="EOY09211.1" /db_xref="Phytozome:POPTR_0018s02190.1" /db_xref="TAIR:AT5G25260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D2XNQ9" /translation="MYKVANASEFLVITGIGIPDIKLAKKAWILPGQSCTVFDVSPVN YTFEVQAMSAEKLPFVLPAVFTIGPRVDDEHSLLKYAKLISPHDKLSNHVKELVQGII EGETRVLAASMTMEEIFKGTKEFKLEVFEKVQLELNQFGLLIYNANVKQLVDVPGHEY FSYLGQKTQMEAANQAKVDVAEAKMKGEIGSKLREGQTLQNAARIDAETKIISTQRQG EGKKEEIRVKTEVKVFENQREAELAEANADLAKKKAGWAKEAQVAEVEASKAVALREA ELQKEVERMNALTRTEKLKAEFLSQASVEYDTKVQKANWELYQKQKQAEAILYEKEKE AAAQKAIADATFYGRQRVADVELYAKQKEAEGLMALAQAQGVYLRTLLEALGGNYAAL RDYLMINGGMFQEIAKINAEAVRGLQPRISIWTNGGSEAMDGNGSNALKEVAGVYRML PPLFKTVHEQTGMLPPPWMGTLSADSQQATTD" mobile_element complement(27210702..27210760) /note="source:CACAO_M_E22186_F143_scaffold_3 9968 10028" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27213448..27213685 /note="source:CACAO_M_S_E66657_F76_scaffold_5 113 352" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27214181..27214500 /note="source:CACAO_M_S_E66657_F76_scaffold_5 3965 4291" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27219206..27219681 /note="source:CACAO_M_S_E66657_F76_scaffold_5 6115 6568" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27222465..27223032 /note="source:CACAO_M_S_E66657_F76_scaffold_5 6555 7156" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27223035..27224074 /note="source:CACAO_M_S_E4911_F76_scaffold_1 14959 15986" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27224075..27234980 /note="source:CACAO_M_S_E66372_F33_scaffold_5 1 10906" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27236458..27236490 /note="source:CACAO_M_E58877_F5_scaffold_9 4571 4603" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27238519..27239133 /note="source:CACAO_M_E52278_F17_scaffold_7 1 626" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(27245919..27255311) /locus_tag="TCM_024622" /note="dbxref CacaoGD:Thecc1EG024622" mRNA complement(join(27245919..27246554,27246730..27246850, 27247363..27247467,27247654..27247786,27248353..27248557, 27248810..27248915,27249016..27250125,27251045..27251150, 27253961..27254133,27254577..27255311)) /locus_tag="TCM_024622" /product="Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033271001" /inference="similar to AA sequence:Phytozome:GSVIVT01033271001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc815t5_C2" CDS complement(join(27246463..27246554,27246730..27246850, 27247363..27247467,27247654..27247786,27248353..27248557, 27248810..27248915,27249016..27250125,27251045..27251150, 27253961..27254133,27254577..27254951)) /locus_tag="TCM_024622" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1" /protein_id="EOY09212.1" /db_xref="Phytozome:GSVIVT01033271001" /db_xref="TAIR:AT2G41720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RWS8" /translation="MTTLPHPLPLKLTLQSPDSTHSTRPKSLVLCKKRKNDTAFEDQK SGFVDYDKGQHEVSTRVSGLRKADIPKRYRLRVEGDRFQKDWTVSEVVDQIQELNHWE NVEPVLNRWVGRFARKNFPFLIKELTQRGAIEHSVKVFDWMKNQKNYCARNDIYNMMI RLHARHNRTDQARGLFFEMQKWRCKPDAETYNALIHAHGRAGQWRWAMNIMEDMLSAA IPPSRSTYNNLINACGSSGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSK ALSYFELMKGTNIRPDTTTLNIVINCLVKLGQYGKAIDIFNSMREKRADCHPDIVTFT SIIHLYSVSGQMENCKAVFNTMLAEGIRPNIVTYNTLMAAYASHGMSEEAFAVFEQIK HNGFRPDVVSFTSLLNAYGRSQQPDKAREVFVIMKRDNCKPNLVSYNALIDAYGSNGL LAEAVEVLRHMEQDGIHPNIVSICTLLAACGRCGQKVKIDAVLSAAELRGIKLNTVAY NSAIGSYMNFGEFEKAVALYKSMRKRNVMPDSVTYTVLISGYCKMSKYGEALGFLDDM VALKLPLTKEVYSSLICVYSKQGQVAEAESMFNMMKVASCCPDVVAYTAMLHAYNAAE NWEKACALFLDMETNDVQPDSVACSALMRAFNKGGRPSKVLVLAEYMREKAIPLNDAT FFEMVSACSMLRDWKTTMDLINLMEPLFPLVSIGLMNQLLHLVGKSGKIESMMKLFYK MIASGAAVNFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSNGMFVDIVSFSQKG CGAEYADKIRERLESMRRSGDQNSSGMVASPLSTSPLIIGSEV" mRNA complement(join(<27246464..27246554,27246730..27246850, 27247363..27247467,27247654..27247786,27248353..27248557, 27248810..27248915,27249016..27250125,27250993..27251150, 27253961..27254133,27254577..27255038)) /locus_tag="TCM_024622" /product="Tetratricopeptide repeat (TPR)-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033271001" /inference="similar to AA sequence:Phytozome:GSVIVT01033271001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc815t2_C2; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc815t5_C2" CDS complement(join(<27246466..27246554,27246730..27246850, 27247363..27247467,27247654..27247786,27248353..27248557, 27248810..27248915,27249016..27250035)) /locus_tag="TCM_024622" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein isoform 2" /protein_id="EOY09213.1" /db_xref="Phytozome:GSVIVT01033271001" /db_xref="TAIR:AT2G41720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RWS8" /translation="MTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPD TTTLNIVINCLVKLGQYGKAIDIFNSMREKRADCHPDIVTFTSIIHLYSVSGQMENCK AVFNTMLAEGIRPNIVTYNTLMAAYASHGMSEEAFAVFEQIKHNGFRPDVVSFTSLLN AYGRSQQPDKAREVFVIMKRDNCKPNLVSYNALIDAYGSNGLLAEAVEVLRHMEQDGI HPNIVSICTLLAACGRCGQKVKIDAVLSAAELRGIKLNTVAYNSAIGSYMNFGEFEKA VALYKSMRKRNVMPDSVTYTVLISGYCKMSKYGEALGFLDDMVALKLPLTKEVYSSLI CVYSKQGQVAEAESMFNMMKVASCCPDVVAYTAMLHAYNAAENWEKACALFLDMETND VQPDSVACSALMRAFNKGGRPSKVLVLAEYMREKAIPLNDATFFEMVSACSMLRDWKT TMDLINLMEPLFPLVSIGLMNQLLHLVGKSGKIESMMKLFYKMIASGAAVNFNTYSIL LKNLLAAGNWRKYIEVLQWMEDAGIQPSNGMFVDIVSFSQKGCGAEYADKIRERLESM RRSGDQNSSGMVASPLSTSPLIIGSEV" gene complement(27254631..27262771) /locus_tag="TCM_024623" /note="dbxref CacaoGD:Thecc1EG024623" mRNA complement(join(27254631..27255080,27261230..27261421, 27261505..27262771)) /locus_tag="TCM_024623" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003359t1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.43 coverage" CDS complement(join(27254953..27255080,27261230..27261421, 27261505..27262525)) /locus_tag="TCM_024623" /note="paralog of Thecc1EG003359t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09214.1" /translation="MKLKDFNTFKNRTYSASLVEEFYANVAIDKDELKDSNDYIDDGL NVYLNGKEFIVTVVDLGNLLKIESEDGDSEMPENYNPTSLWEIITERKEKYSSKSNAG LIKSLQVRILHYFIASNIHGRGGSFSYISFQDLWLMEHAFNGAPLNLGKFMIERMRGV YRLEKINLSYGNMITSLVQKKEIWSSRYELDKVKSRDQAIYLGSLPKMGYKLDGEKFV KTPKVTLGGESSLPAQLEAAPSQLSNEMVFNLLMRMDGKLTNQAVRMQKIEEKLVELK NVLKEKGKMPHKLTATDISATSSPAPVGQDAEGSAFQVEGHEPEVDQPRKSPSPKPQK EAKSEQEEVSIMVFHQMVREEQAENEAAKRKAEKSVSPKESPELVLVIKEQYGKGKEK AAAALQSKSKPSEQSNGKNPRELLKKGIIHCHSSSNCQKPSTGIAPSSPLSSLR" mobile_element 27259074..27263746 /note="source:CACAO_M_E69730_F14_scaffold_9 758 4620" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27265389..27265892) /note="source:CACAO_M_E4870_F14_scaffold_2 9676 10180" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27265905..27267968 /note="source:INTACT288_F14_scaffold_2-int 6821 8900" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27267967..27268418 /note="source:CACAO_M_E1593_F14_scaffold_1 8956 9409" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27268354..27268433) /note="source:INTACT405F_F91_scaffold_4-int 19267 19344" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(27268410..27268655) /note="source:CACAO_M_S_E83372_F14_scaffold_6 21755 22017" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27268563..27268667 /note="source:CACAO_M_S_E32590_F18_scaffold_4 10414 10518" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 27272276..27273812 /locus_tag="TCM_024624" /note="dbxref CacaoGD:Thecc1EG024624" mRNA join(27272276..27272716,27272962..27273812) /locus_tag="TCM_024624" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003117t1" /note="quality class is medium-utrpoor, express is strong, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.70 coverage" CDS join(27272556..27272716,27272962..27273172) /locus_tag="TCM_024624" /note="paralog of Thecc1EG003117t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09215.1" /translation="MALILIANNILLGQDYRRRVMPWLLSLVENIDAWNVFPWGHYVW KLTLDYLLKGNKPNNRYLDVISTIRSVNLRQYGQMPRDRPQPNDDGAHQRVDRARTVQ RSERADDYGAQQRLGKVERER" gene complement(27274047..27276177) /locus_tag="TCM_024625" /note="dbxref CacaoGD:Thecc1EG024625" mRNA complement(join(27274047..27274079,27275382..27276177)) /locus_tag="TCM_024625" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g13549t00001" CDS complement(27275605..27275913) /locus_tag="TCM_024625" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09216.1" /translation="MLNGFIGSFPLFLESRVTLWVSWLVLGFVCSRLMLFGIVISMFI NDFQSSLLSFFGFLEVSICVFQIWVLYFPLYAFLFSIYLVRLLEPYFYYLVLICFSFI " gene complement(27276547..27289981) /locus_tag="TCM_024626" /note="dbxref CacaoGD:Thecc1EG024626" mRNA complement(join(27276547..27277846,27277950..27278029, 27278493..27278594,27278677..27278805,27278905..27279066, 27279629..27279742,27279843..27279953,27280575..27280709, 27280805..27280861,27280961..27281054,27282391..27282575, 27282780..27283007,27283173..27283354,27284365..27284575, 27285248..27285339,27286342..27286575,27287453..27287996, 27288792..27289508,27289759..27289981)) /locus_tag="TCM_024626" /product="ARM repeat superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s04850.1" /inference="similar to AA sequence:ricco:30006.m000280" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1016t8" mRNA complement(join(27276898..27277846,27277950..27278029, 27278493..27278594,27278677..27278805,27278905..27279066, 27279629..27279742,27279843..27279911,27280575..27280709, 27280805..27280861,27280961..27281054,27282391..27282575, 27282780..27283007,27283173..27283354,27284365..27284575, 27285248..27285339,27287453..27287996,27288792..27289429)) /locus_tag="TCM_024626" /product="ARM repeat superfamily protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s04850.1" /inference="similar to AA sequence:ricco:30006.m000280" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1013t3; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1016t8" mRNA complement(join(27276898..27277846,27277950..27278029, 27278493..27278594,27278677..27278805,27278905..27279066, 27279629..27279742,27279843..27279911,27280575..27280709, 27280805..27280861,27280961..27281054,27282391..27282575, 27282780..27283007,27283173..27283354,27284365..27284575, 27285248..27285339,27286342..27286575,27287453..27287996, 27288792..27289429)) /locus_tag="TCM_024626" /product="ARM repeat superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s04850.1" /inference="similar to AA sequence:ricco:30006.m000280" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1013t8; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1016t8" CDS complement(join(27277486..27277846,27277950..27278029, 27278493..27278594,27278677..27278805,27278905..27279066, 27279629..27279742,27279843..27279911,27280575..27280709, 27280805..27280861,27280961..27281054,27282391..27282575, 27282780..27283007,27283173..27283354,27284365..27284575, 27285248..27285339,27287453..27287996,27288792..27289346)) /locus_tag="TCM_024626" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30006.m000280" /codon_start=1 /product="ARM repeat superfamily protein, putative isoform 3" /protein_id="EOY09219.1" /db_xref="TAIR:AT4G23540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JNL5" /translation="MKKKQTPNHPEEDIRENPNELELENETETPFKDGTDICQQLMDR YSKSAAPQHRHLLATAAAMRSILSAESLPLSPPAYFAAAISALDDDSATTLDSTAVGA LLTFLSIVVLLVPKGGISSDKAKEAVEVVVRVVGKEGLGVASLRSGVKCLGVLVDGFC DLEDWHSVRFGLETLLGFAIDKRPKVRRCAQEYLEKVFKSFQSSIVIKEASKLVLSLL KKHMPLALTLSTIKSGDDSKDETLSKPENLEVLHMLDLVKLAVPYLSAKVRLKILSEL RKLMSSEFSSLTRNIHKTIEVLFGNLNVEAIIPEMENIIVSLASYVSGEKNPVDTLIS ASTLLKCALDKLHAGESNSWMKNVPLVFGSLAGESSYIFMKSIVHKLAELMSLAKGDT SNMNHLQNCIGSAVTVIGPERILTLLPITLHSDDISYSNVWLVPILKDYVVGASLRYY MESIVPLAKSFQLASSKVKKSVIRQDLQDRAHGLWGLLPAFCRYPIDMHKTFKALAEL LIDILKEDSFMDENIASALQILVNQNKSILRSGKDAGKANNFTVRDSVLELRSSASYS KKSATRNMKVLSSCAPALLQALSDVFVCSLPAKRLYLKDAIGCLASITDSSITKRIFV SLVQKLQFIDGEGEIGKQAANANDCMEKEQGNLSTTGKDAHRCVILELASSFVAGAEE DLIDFIYALVKQTFQETDEIGHCEAYFTLSRVLEEHAWFCSSRVVELIDLLLGLKSPA DIASLRSRLDCFNILMVQTLKMSSLEENTKPFLILNEIIVTLKDGKEEPRKATYDILL KMSSTLRNLSDLRSDPPYHKLISMIMGYLSGSSPHIKSGAVAALSVLVYNDPEICVSV PDLVSSILSLLQTKAVEVIKAVLGFVKVLVSSLQAKDLQNFLSDIIHGVVQWSSISRN HFRSKVTIILEIVTRKCGIAAVQLVTPEKHRGFLNTVIENRRSKTTPKEVDANDAETV LVDSLTEGSQKRKHKGLGTFQQKNDFVEHRKRKRDKRDSGKLPDSSEPGISAAHGGRM KMAKGAKHVKNSMKGHSDGNGEKNKKNFKKRFARGQKRKMDEVSRSKKDEAGSKKHSF KVGKQKKLRGK" CDS complement(join(27277486..27277846,27277950..27278029, 27278493..27278594,27278677..27278805,27278905..27279066, 27279629..27279742,27279843..27279911,27280575..27280709, 27280805..27280861,27280961..27281054,27282391..27282575, 27282780..27283007,27283173..27283354,27284365..27284575, 27285248..27285339,27286342..27286575,27287453..27287996, 27288792..27289346)) /locus_tag="TCM_024626" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30006.m000280" /codon_start=1 /product="ARM repeat superfamily protein, putative isoform 2" /protein_id="EOY09218.1" /db_xref="TAIR:AT4G23540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9T7" /translation="MKKKQTPNHPEEDIRENPNELELENETETPFKDGTDICQQLMDR YSKSAAPQHRHLLATAAAMRSILSAESLPLSPPAYFAAAISALDDDSATTLDSTAVGA LLTFLSIVVLLVPKGGISSDKAKEAVEVVVRVVGKEGLGVASLRSGVKCLGVLVDGFC DLEDWHSVRFGLETLLGFAIDKRPKVRRCAQEYLEKVFKSFQSSIVIKEASKLVLSLL KKHMPLALTLSTIKSGDDSKDETLSKPENLEVLHMLDLVKLAVPYLSAKVRLKILSEL RKLMSSEFSSLTRNIHKTIEVLFGNLNVEAIIPEMENIIVSLASYVSGEKNPVDTLIS ASTLLKCALDKLHAGESNSWMKNVPLVFGSLAVLLTSEASTTSLASVIMKELISNHID LKSFSAENNGLGSEEADAIKSICAILENTLSSSDGIPNEHVMAVLTVLFQRLGESSYI FMKSIVHKLAELMSLAKGDTSNMNHLQNCIGSAVTVIGPERILTLLPITLHSDDISYS NVWLVPILKDYVVGASLRYYMESIVPLAKSFQLASSKVKKSVIRQDLQDRAHGLWGLL PAFCRYPIDMHKTFKALAELLIDILKEDSFMDENIASALQILVNQNKSILRSGKDAGK ANNFTVRDSVLELRSSASYSKKSATRNMKVLSSCAPALLQALSDVFVCSLPAKRLYLK DAIGCLASITDSSITKRIFVSLVQKLQFIDGEGEIGKQAANANDCMEKEQGNLSTTGK DAHRCVILELASSFVAGAEEDLIDFIYALVKQTFQETDEIGHCEAYFTLSRVLEEHAW FCSSRVVELIDLLLGLKSPADIASLRSRLDCFNILMVQTLKMSSLEENTKPFLILNEI IVTLKDGKEEPRKATYDILLKMSSTLRNLSDLRSDPPYHKLISMIMGYLSGSSPHIKS GAVAALSVLVYNDPEICVSVPDLVSSILSLLQTKAVEVIKAVLGFVKVLVSSLQAKDL QNFLSDIIHGVVQWSSISRNHFRSKVTIILEIVTRKCGIAAVQLVTPEKHRGFLNTVI ENRRSKTTPKEVDANDAETVLVDSLTEGSQKRKHKGLGTFQQKNDFVEHRKRKRDKRD SGKLPDSSEPGISAAHGGRMKMAKGAKHVKNSMKGHSDGNGEKNKKNFKKRFARGQKR KMDEVSRSKKDEAGSKKHSFKVGKQKKLRGK" CDS complement(join(27277486..27277846,27277950..27278029, 27278493..27278594,27278677..27278805,27278905..27279066, 27279629..27279742,27279843..27279953,27280575..27280709, 27280805..27280861,27280961..27281054,27282391..27282575, 27282780..27283007,27283173..27283354,27284365..27284575, 27285248..27285339,27286342..27286575,27287453..27287996, 27288792..27289346)) /locus_tag="TCM_024626" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30006.m000280" /codon_start=1 /product="ARM repeat superfamily protein, putative isoform 1" /protein_id="EOY09217.1" /db_xref="TAIR:AT4G23540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9T7" /translation="MKKKQTPNHPEEDIRENPNELELENETETPFKDGTDICQQLMDR YSKSAAPQHRHLLATAAAMRSILSAESLPLSPPAYFAAAISALDDDSATTLDSTAVGA LLTFLSIVVLLVPKGGISSDKAKEAVEVVVRVVGKEGLGVASLRSGVKCLGVLVDGFC DLEDWHSVRFGLETLLGFAIDKRPKVRRCAQEYLEKVFKSFQSSIVIKEASKLVLSLL KKHMPLALTLSTIKSGDDSKDETLSKPENLEVLHMLDLVKLAVPYLSAKVRLKILSEL RKLMSSEFSSLTRNIHKTIEVLFGNLNVEAIIPEMENIIVSLASYVSGEKNPVDTLIS ASTLLKCALDKLHAGESNSWMKNVPLVFGSLAVLLTSEASTTSLASVIMKELISNHID LKSFSAENNGLGSEEADAIKSICAILENTLSSSDGIPNEHVMAVLTVLFQRLGESSYI FMKSIVHKLAELMSLAKGDTSNMNHLQNCIGSAVTVIGPERILTLLPITLHSDDISYS NVWLVPILKDYVVGASLRYYMESIVPLAKSFQLASSKVKKSVIRQDLQDRAHGLWGLL PAFCRYPIDMHKTFKALAELLIDILKEDSFMDENIASALQILVNQNKSILRSGKDAGK ANNFTVRDSVLELRSSASYSKKSATRNMKVLSSCAPALLQALSDVFVCSLPAKRLYLK DAIGCLASITDSSITKRIFVSLVQKLQFIDGEGEIGKQAANANDCMEKEQGNLSTTGK DAHRCVILELASSFVAGAEEDLIDFIYALVKQTFQETDEIGHCEAYFTLSRVLEEHAW FCSSRVVELIDLLLGLKSPADIASLRSRLDCFNILMVQTLKMAAEFQFELSKFLQMSS LEENTKPFLILNEIIVTLKDGKEEPRKATYDILLKMSSTLRNLSDLRSDPPYHKLISM IMGYLSGSSPHIKSGAVAALSVLVYNDPEICVSVPDLVSSILSLLQTKAVEVIKAVLG FVKVLVSSLQAKDLQNFLSDIIHGVVQWSSISRNHFRSKVTIILEIVTRKCGIAAVQL VTPEKHRGFLNTVIENRRSKTTPKEVDANDAETVLVDSLTEGSQKRKHKGLGTFQQKN DFVEHRKRKRDKRDSGKLPDSSEPGISAAHGGRMKMAKGAKHVKNSMKGHSDGNGEKN KKNFKKRFARGQKRKMDEVSRSKKDEAGSKKHSFKVGKQKKLRGK" mRNA complement(join(<27278712..27278805,27278905..27279066, 27279629..27279742,27280575..27280709,27280805..27280861, 27280961..27281054,27282391..27282575,27282780..27283007, 27283173..27283354,27284365..27284575,27285248..27285339, 27286342..27286575,27287453..27287996,27288792..27289403)) /locus_tag="TCM_024626" /product="ARM repeat superfamily protein, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s04850.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s04850.1" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc943t2_C2; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1016t8" CDS complement(join(<27278713..27278805,27278905..27279066, 27279629..27279742,27280575..27280709,27280805..27280861, 27280961..27281054,27282391..27282575,27282780..27283007, 27283173..27283354,27284365..27284575,27285248..27285339, 27286342..27286575,27287453..27287996,27288792..27289346)) /locus_tag="TCM_024626" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="ARM repeat superfamily protein, putative isoform 4" /protein_id="EOY09220.1" /db_xref="Phytozome:POPTR_0006s04850.1" /db_xref="TAIR:AT4G23540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9T7" /translation="MKKKQTPNHPEEDIRENPNELELENETETPFKDGTDICQQLMDR YSKSAAPQHRHLLATAAAMRSILSAESLPLSPPAYFAAAISALDDDSATTLDSTAVGA LLTFLSIVVLLVPKGGISSDKAKEAVEVVVRVVGKEGLGVASLRSGVKCLGVLVDGFC DLEDWHSVRFGLETLLGFAIDKRPKVRRCAQEYLEKVFKSFQSSIVIKEASKLVLSLL KKHMPLALTLSTIKSGDDSKDETLSKPENLEVLHMLDLVKLAVPYLSAKVRLKILSEL RKLMSSEFSSLTRNIHKTIEVLFGNLNVEAIIPEMENIIVSLASYVSGEKNPVDTLIS ASTLLKCALDKLHAGESNSWMKNVPLVFGSLAVLLTSEASTTSLASVIMKELISNHID LKSFSAENNGLGSEEADAIKSICAILENTLSSSDGIPNEHVMAVLTVLFQRLGESSYI FMKSIVHKLAELMSLAKGDTSNMNHLQNCIGSAVTVIGPERILTLLPITLHSDDISYS NVWLVPILKDYVVGASLRYYMESIVPLAKSFQLASSKVKKSVIRQDLQDRAHGLWGLL PAFCRYPIDMHKTFKALAELLIDILKEDSFMDENIASALQILVNQNKSILRSGKDAGK ANNFTVRDSVLELRSSASYSKKSATRNMKVLSSCAPALLQALSDVFVCSLPAKRLYLK DAIGCLASITDSSITKRIFVSLVQKLQFIDGEGEIGKQAANANDCMEKEQGNLSTTGK DAHRCVILELASSFVAGAEEDLIDFIYALVKQTFQETDEIGHCEAYFTLSRVLEEHAW FCSSRVVELIDLLLGLKSPADIASLRSRLDCFNILMVQTLKGKEEPRKATYDILLKMS STLRNLSDLRSDPPYHKLISMIMGYLSGSSPHIKSGAVAALSVLVYNDPEICVSVPDL VSSILSLLQTKAVEVIKAVLGFVKVLVSSLQAKDLQNFLSDIIHGVVQ" gene 27292816..27293820 /locus_tag="TCM_024627" /note="dbxref CacaoGD:Thecc1EG024627" mRNA 27292816..27293820 /locus_tag="TCM_024627" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.37 coverage" CDS 27292995..27293204 /locus_tag="TCM_024627" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09221.1" /translation="METSIQNQKKIDRRNRNAPGRAKGRGGTHPPSLRLCRLSDNPGA GSCQAASLSISDACFDIPINSKNGK" gene 27294766..27296889 /locus_tag="TCM_024628" /note="dbxref CacaoGD:Thecc1EG024628" mRNA 27294766..27296889 /locus_tag="TCM_024628" /product="Ribosomal protein L11 methyltransferase, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s04860.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s04860.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5918t1" CDS 27295171..27296652 /locus_tag="TCM_024628" /codon_start=1 /product="Ribosomal protein L11 methyltransferase, putative" /protein_id="EOY09222.1" /db_xref="Phytozome:POPTR_0006s04860.1" /db_xref="TAIR:AT3G57400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9T8" /translation="MGFAAAKPNTHTISSNGNKENRGMGLLLVFFPEDQNKISNSIDN TTSRFIRRTSSSLLFTKAQSTISICALLVFFTLLLFTLSTFEPTIPTPTTTTSTIKNS RRFLSQKTQLSSSSSSYRFFPMWDYQPPHVKKKSNVSSSSFALQGMGMLYRRGTKAMN DLVVSHVVEDVSEEELRLFLRVLHRSGVTSKADIVFIFGSSLLSSRFSFVIQEENESF LKLIQHYKEIDSKGSRGSVFSFDPTQFWKSGKKGVGEPIWGKKSRGNYSNSTEAEGEP TRLTYGSVVGFDVSELDPENSLAGFLDHVPMSLRRWACYPMLLGRVRRNFKHMMLLDV KNLMLLSDPLGRVRNRSPESVYLLTKENSSSKHNKRNSEKTHCQVNSAILMGGARGIR RLANAMLTEIVRATMQHKKKNPISEPGILSQLVGNGYILKNVHLITSTESIQEASSLM GLSSNSAADYSVIQRGNSNRDLNSIMMKLICLSEVESSVYRDC" mobile_element 27305803..27308421 /note="source:CACAO_M_E43971_F53_scaffold_5 1 2619" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(27312022..27329501) /locus_tag="TCM_024630" /note="dbxref CacaoGD:Thecc1EG024630" mRNA complement(join(27312022..27312621,27312701..27312930, 27313102..27313360,27315117..27315179,27315980..27316105, 27316183..27316323,27316412..27316422,27316572..27316719, 27317150..27317278,27318846..27318983,27319093..27319161, 27319230..27319298,27320957..27321115,27321208..27321308, 27321391..27321541,27321620..27321779,27324055..27324187, 27324356..27324533,27324679..27324915,27325016..27325084, 27325239..27325338,27325619..27325768,27328157..27328707, 27329360..27329501)) /locus_tag="TCM_024630" /product="Villin 2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033261001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039301t3" /inference="similar to AA sequence:Phytozome:GSVIVT01033261001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:PASA:2:TSA:puevd3b023820t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6200t3" mRNA complement(join(27312022..27312621,27312701..27312930, 27313102..27313360,27314418..27314519,27315117..27315179, 27315980..27316105,27316183..27316323,27316412..27316422, 27316572..27316719,27317150..27317278,27318846..27318983, 27319093..27319161,27319230..27319298,27320957..27321115, 27321208..27321308,27321391..27321541,27321620..27321779, 27324055..27324187,27324356..27324533,27324679..27324915, 27325016..27325084,27325239..27325338,27325619..27325768, 27328157..27328707,27329360..27329501)) /locus_tag="TCM_024630" /product="Villin 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033261001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039301t3" /inference="similar to AA sequence:Phytozome:POPTR_0016s05650.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6200t3" mRNA complement(join(27312022..27312621,27312701..27312930, 27313102..27313360,27315117..27315179,27315980..27316105, 27316183..27316323,27316412..27316422,27316572..27316719, 27317150..27317278,27318846..27318983,27319093..27319161, 27319230..27319298,27320957..27321115,27321208..27321308, 27321391..27321541,27321620..27321779,27324055..27324533, 27324679..27325147)) /locus_tag="TCM_024630" /product="Villin 2 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033261001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039301t3" /inference="similar to AA sequence:Phytozome:GSVIVT01033261001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:PASA:2:TSA:puevd3b023820t1a3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6200t3" mRNA complement(join(27312062..27312621,27312701..27313360, 27315117..27315179,27315980..27316105,27316183..27316323, 27316412..27316422,27316572..27316719,27317150..27317278, 27318846..27318983,27319093..27319161,27319230..27319298, 27320957..27321115,27321208..27321308,27321391..27321541, 27321620..27321779,27324055..27324187,27324356..27324533, 27324679..>27324706)) /locus_tag="TCM_024630" /product="Villin 2 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033261001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039301t3" /inference="similar to AA sequence:Phytozome:POPTR_0016s05650.1" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc327t9; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6200t3" CDS complement(join(27312508..27312621,27312701..27312930, 27313102..27313360,27315117..27315179,27315980..27316105, 27316183..27316323,27316412..27316422,27316572..27316719, 27317150..27317278,27318846..27318983,27319093..27319161, 27319230..27319298,27320957..27321115,27321208..27321308, 27321391..27321541,27321620..27321779,27324055..27324187, 27324356..27324533,27324679..27324915,27325016..27325084, 27325239..27325338,27325619..27325674)) /locus_tag="TCM_024630" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG039301t3" /codon_start=1 /product="Villin 2 isoform 2" /protein_id="EOY09224.1" /db_xref="Phytozome:GSVIVT01033261001" /db_xref="TAIR:AT2G41740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O81644" /translation="MSSSAKVLDPAFQGVGQKPGTEIWRIEDFQPVPLPKSDYGKFYM GDSYIVLQTTPSKGGSYLYDIHFWMGKDTSQDEAGTAAIKTVELDAVLGGRAVQHREL QGHESDKFLSYFKPCIIPLEGGIASGFKKPEEEEFETRLYVCRGKRVVRLKQVPFARS SLNHDDVFILDTQNKIYQFNGANSNIQERAKALEVIQFLKEKYHEGKCDVAIVDDGKL DTESDSGEFWVLFGGFAPIGKKVAGEDDVIPETTPAKLYSITDGEVKIVEGELSKGLL ENNKCYLLDCGVEVFVWVGRVTQVEDRKAASQVAEEFVAGHNRPKATRMTRVIQGYET NSFKSNFDSWPAGSAAPGGEEGRGKVAALLKQQGVGVKGMSKSAPVNEEVPPLLEGGG KMEVWCINGSAKTPLPKEDIGKFYSGDCYIVLYTYHSGDRKEDYFLCCWIGKDSIEED QKMAARLANTMSNSLKGRPVQGRVFEGKEPPQFIALFQPMVVLKGGLSTGYKKSIADK GLTDETYTADCVALFRISGTSVHNNKALQVDAVATSLNSTECFLLQSGSSIFTWHGNQ STYEQQQLAAKVAEFLKPGVALKHAKEGTESSTFWFALGGKQSYTSKKASTETVRDPH LFMFSLNKGKFEVEEVYNFSQDDLLTEDSLILDTHAEVFVWVGQSVDTKEKQNVFEIG QKYIDMAASLEGLSPNVPLYKVTEGNEPCFFTTFFSWDSTRATVQGNSFQKKVALLFG ASHAVEAQDRSNGNQGGPTQRASALAALSSAFNSSSGSKISAPKPSSASQGSQRAAAV AALSSVLTAEKKKQSPDASPTKSTSSTPAVTSPPPETKSEVDPSEAEDSQEVAEAKET GVVSETNGDNSEPKQELEQDENGSGSSQSTFSYDQLKAKSDNPVTGIDFKRREAYLSD EEFQTVLGMAKEAFYKLPKWKQDMQKKKVDLF" CDS complement(join(27312508..27312621,27312701..27312930, 27313102..27313360,27314418..27314519,27315117..27315179, 27315980..27316105,27316183..27316323,27316412..27316422, 27316572..27316719,27317150..27317278,27318846..27318983, 27319093..27319161,27319230..27319298,27320957..27321115, 27321208..27321308,27321391..27321541,27321620..27321779, 27324055..27324187,27324356..27324533,27324679..27324915, 27325016..27325084,27325239..27325338,27325619..27325674)) /locus_tag="TCM_024630" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG039301t3" /codon_start=1 /product="Villin 2 isoform 1" /protein_id="EOY09223.1" /db_xref="Phytozome:POPTR_0016s05650.1" /db_xref="TAIR:AT2G41740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O81644" /translation="MSSSAKVLDPAFQGVGQKPGTEIWRIEDFQPVPLPKSDYGKFYM GDSYIVLQTTPSKGGSYLYDIHFWMGKDTSQDEAGTAAIKTVELDAVLGGRAVQHREL QGHESDKFLSYFKPCIIPLEGGIASGFKKPEEEEFETRLYVCRGKRVVRLKQVPFARS SLNHDDVFILDTQNKIYQFNGANSNIQERAKALEVIQFLKEKYHEGKCDVAIVDDGKL DTESDSGEFWVLFGGFAPIGKKVAGEDDVIPETTPAKLYSITDGEVKIVEGELSKGLL ENNKCYLLDCGVEVFVWVGRVTQVEDRKAASQVAEEFVAGHNRPKATRMTRVIQGYET NSFKSNFDSWPAGSAAPGGEEGRGKVAALLKQQGVGVKGMSKSAPVNEEVPPLLEGGG KMEVWCINGSAKTPLPKEDIGKFYSGDCYIVLYTYHSGDRKEDYFLCCWIGKDSIEED QKMAARLANTMSNSLKGRPVQGRVFEGKEPPQFIALFQPMVVLKGGLSTGYKKSIADK GLTDETYTADCVALFRISGTSVHNNKALQVDAVATSLNSTECFLLQSGSSIFTWHGNQ STYEQQQLAAKVAEFLKPGVALKHAKEGTESSTFWFALGGKQSYTSKKASTETVRDPH LFMFSLNKGKFEVEEVYNFSQDDLLTEDSLILDTHAEVFVWVGQSVDTKEKQNVFEIG QKYIDMAASLEGLSPNVPLYKVTEGNEPCFFTTFFSWDSTRATVQGNSFQKKVALLFG ASHAVEEKSNGNQGGPTQRASALAALSSAFNPSSAKSTLSAQDRSNGNQGGPTQRASA LAALSSAFNSSSGSKISAPKPSSASQGSQRAAAVAALSSVLTAEKKKQSPDASPTKST SSTPAVTSPPPETKSEVDPSEAEDSQEVAEAKETGVVSETNGDNSEPKQELEQDENGS GSSQSTFSYDQLKAKSDNPVTGIDFKRREAYLSDEEFQTVLGMAKEAFYKLPKWKQDM QKKKVDLF" CDS complement(join(27312508..27312621,27312701..27312930, 27313102..27313360,27315117..27315179,27315980..27316105, 27316183..27316323,27316412..27316422,27316572..27316719, 27317150..27317278,27318846..27318983,27319093..27319161, 27319230..27319298,27320957..27321115,27321208..27321308, 27321391..27321541,27321620..27321779,27324055..27324206)) /locus_tag="TCM_024630" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG039301t3" /codon_start=1 /product="Villin 2 isoform 3" /protein_id="EOY09225.1" /db_xref="Phytozome:GSVIVT01033261001" /db_xref="TAIR:AT2G41740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O81644" /translation="MVITLPDDGKLDTESDSGEFWVLFGGFAPIGKKVAGEDDVIPET TPAKLYSITDGEVKIVEGELSKGLLENNKCYLLDCGVEVFVWVGRVTQVEDRKAASQV AEEFVAGHNRPKATRMTRVIQGYETNSFKSNFDSWPAGSAAPGGEEGRGKVAALLKQQ GVGVKGMSKSAPVNEEVPPLLEGGGKMEVWCINGSAKTPLPKEDIGKFYSGDCYIVLY TYHSGDRKEDYFLCCWIGKDSIEEDQKMAARLANTMSNSLKGRPVQGRVFEGKEPPQF IALFQPMVVLKGGLSTGYKKSIADKGLTDETYTADCVALFRISGTSVHNNKALQVDAV ATSLNSTECFLLQSGSSIFTWHGNQSTYEQQQLAAKVAEFLKPGVALKHAKEGTESST FWFALGGKQSYTSKKASTETVRDPHLFMFSLNKGKFEVEEVYNFSQDDLLTEDSLILD THAEVFVWVGQSVDTKEKQNVFEIGQKYIDMAASLEGLSPNVPLYKVTEGNEPCFFTT FFSWDSTRATVQGNSFQKKVALLFGASHAVEAQDRSNGNQGGPTQRASALAALSSAFN SSSGSKISAPKPSSASQGSQRAAAVAALSSVLTAEKKKQSPDASPTKSTSSTPAVTSP PPETKSEVDPSEAEDSQEVAEAKETGVVSETNGDNSEPKQELEQDENGSGSSQSTFSY DQLKAKSDNPVTGIDFKRREAYLSDEEFQTVLGMAKEAFYKLPKWKQDMQKKKVDLF" CDS complement(join(27313073..27313360,27315117..27315179, 27315980..27316105,27316183..27316323,27316412..27316422, 27316572..27316719,27317150..27317278,27318846..27318983, 27319093..27319161,27319230..27319298,27320957..27321115, 27321208..27321308,27321391..27321541,27321620..27321779, 27324055..27324187,27324356..27324533, 27324679..>27324705)) /locus_tag="TCM_024630" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG039301t3" /codon_start=1 /product="Villin 2 isoform 4" /protein_id="EOY09226.1" /db_xref="Phytozome:POPTR_0016s05650.1" /db_xref="TAIR:AT2G41740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O81644" /translation="GKRVVRLKQVPFARSSLNHDDVFILDTQNKIYQFNGANSNIQER AKALEVIQFLKEKYHEGKCDVAIVDDGKLDTESDSGEFWVLFGGFAPIGKKVAGEDDV IPETTPAKLYSITDGEVKIVEGELSKGLLENNKCYLLDCGVEVFVWVGRVTQVEDRKA ASQVAEEFVAGHNRPKATRMTRVIQGYETNSFKSNFDSWPAGSAAPGGEEGRGKVAAL LKQQGVGVKGMSKSAPVNEEVPPLLEGGGKMEVWCINGSAKTPLPKEDIGKFYSGDCY IVLYTYHSGDRKEDYFLCCWIGKDSIEEDQKMAARLANTMSNSLKGRPVQGRVFEGKE PPQFIALFQPMVVLKGGLSTGYKKSIADKGLTDETYTADCVALFRISGTSVHNNKALQ VDAVATSLNSTECFLLQSGSSIFTWHGNQSTYEQQQLAAKVAEFLKPGVALKHAKEGT ESSTFWFALGGKQSYTSKKASTETVRDPHLFMFSLNKGKFEVEEVYNFSQDDLLTEDS LILDTHAEVFVWVGQSVDTKEKQNVFEIGQKYIDMAASLEGLSPNVPLYKVTEGNEPC FFTTFFSWDSTRATVQGNSFQKKVALLFGASHAVEAQDRSNGNQGGPTQRASALAALS SAFNSSSGSKISAPKPSSASQGSQRAAAVAALSSVLTAEKKKQSPDASPTKSTSSTPA VTSPPRKNSCTILF" mobile_element 27338586..27338664 /note="source:CACAO_on_E33_A_scaffold_3 877 955" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 27343041..27346533 /locus_tag="TCM_024631" /note="dbxref CacaoGD:Thecc1EG024631" mRNA 27343041..27346533 /locus_tag="TCM_024631" /product="Leucine-rich repeat containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29761.m000426.6" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025527t1" /inference="similar to AA sequence:ricco:29761.m000426" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1407t9" mRNA join(27343231..27345954,27346175..27346199) /locus_tag="TCM_024631" /product="Leucine-rich repeat containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29761.m000426.6" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025527t1" /inference="similar to AA sequence:ricco:29761.m000426" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.18 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1407t1; alternateUTRof:Thecc1EG024631t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1407t9; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1387t3_C1" CDS 27343311..27345923 /locus_tag="TCM_024631" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29761.m000426; paralog of Thecc1EG025527t1" /codon_start=1 /product="Leucine-rich repeat containing protein, putative isoform 1" /protein_id="EOY09227.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SUF5" /translation="MAESLAFTIGEQLLEKLLNLPEKLGTAAYQEICLAWGIKSDLEK LKGTLSTVKAVLLDAEEKQTHNHELREWLAKLKNAYYDAEDVLDEFEVEALRRQVLKQ RSLGRKVCHFFSRSNPVASAFRMGHKIKSIRERFDEIAALKVKFHLVERDGPDHEDSR SLLQMRESDSSLEPNVVGRNEDKEKIIEMLMHPTDGIGEAIPVLPIVGIAGLGKTVLA KLVFNDERIDKHFRLKIWVCVSEDFDFKQLMMKTIKSATGENCSDMTKEQLYKVLRRC LGGKRYLLILDDVWNEEIRDWIDQALLMDRVNGSKIIVTTRSNRVAAITGTLPQYNLK DLPYEESLSLFLQHAFKKGNEKQPLNLVKIGEEIVKKCKGIPLAVKTLASQLCFETAE DEWKRVRDNEIWELEQEGKGIFPALRLSYDRLPPHLKRCFAYCSVFTKDYVISNIQMV SFWVALGLLKSSKENEGLEAVGKRYLRELWARSLFQEFQETPFLIRFKMHDLLHDFAQ RLAKDECSVVKSCSQDLSQTVRHLSIVNPHLLHQGAPRFLDKAGRVQTLFFPNMEKFN SVSFIEECVSRCSRLRVLDLSVSSFEILPRNIGKWKHLRYLNLSDNISIKRLPNSISK LQSLQTLFLAGCTAIEELPRGIRYMISLRMLFITTKQRVLPENEIGCLKSLQFLSFSE CDNLEYLFQGMQNLTSLRTMLILLCPSLVSLPHGIKYLTALQGLVIWGCEKLSLDMEL EFEGKQDGSLQSLAIGELPKLVALPKWLLLGSTKTLQQLIIMGCENLTALPDWFQDVA ALQLLKIAGCPKLSSLPDGMQHLTFLNQLAIQACPTLSKRCKPGIGEDWPKIAHVTKI VLDGIEISPANDHY" CDS 27343311..27345923 /locus_tag="TCM_024631" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29761.m000426; paralog of Thecc1EG025527t1" /codon_start=1 /product="Leucine-rich repeat containing protein, putative isoform 1" /protein_id="EOY09228.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SUF5" /translation="MAESLAFTIGEQLLEKLLNLPEKLGTAAYQEICLAWGIKSDLEK LKGTLSTVKAVLLDAEEKQTHNHELREWLAKLKNAYYDAEDVLDEFEVEALRRQVLKQ RSLGRKVCHFFSRSNPVASAFRMGHKIKSIRERFDEIAALKVKFHLVERDGPDHEDSR SLLQMRESDSSLEPNVVGRNEDKEKIIEMLMHPTDGIGEAIPVLPIVGIAGLGKTVLA KLVFNDERIDKHFRLKIWVCVSEDFDFKQLMMKTIKSATGENCSDMTKEQLYKVLRRC LGGKRYLLILDDVWNEEIRDWIDQALLMDRVNGSKIIVTTRSNRVAAITGTLPQYNLK DLPYEESLSLFLQHAFKKGNEKQPLNLVKIGEEIVKKCKGIPLAVKTLASQLCFETAE DEWKRVRDNEIWELEQEGKGIFPALRLSYDRLPPHLKRCFAYCSVFTKDYVISNIQMV SFWVALGLLKSSKENEGLEAVGKRYLRELWARSLFQEFQETPFLIRFKMHDLLHDFAQ RLAKDECSVVKSCSQDLSQTVRHLSIVNPHLLHQGAPRFLDKAGRVQTLFFPNMEKFN SVSFIEECVSRCSRLRVLDLSVSSFEILPRNIGKWKHLRYLNLSDNISIKRLPNSISK LQSLQTLFLAGCTAIEELPRGIRYMISLRMLFITTKQRVLPENEIGCLKSLQFLSFSE CDNLEYLFQGMQNLTSLRTMLILLCPSLVSLPHGIKYLTALQGLVIWGCEKLSLDMEL EFEGKQDGSLQSLAIGELPKLVALPKWLLLGSTKTLQQLIIMGCENLTALPDWFQDVA ALQLLKIAGCPKLSSLPDGMQHLTFLNQLAIQACPTLSKRCKPGIGEDWPKIAHVTKI VLDGIEISPANDHY" gene complement(27346331..27349941) /locus_tag="TCM_024632" /note="dbxref CacaoGD:Thecc1EG024632" mRNA complement(join(27346331..27346464,27346815..27346894, 27347339..27347401,27347715..27347762,27348207..27348437, 27349148..27349941)) /locus_tag="TCM_024632" /product="DTW domain-containing protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s05010.1" /inference="similar to AA sequence:TAIR:AT2G41750.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1408t2" CDS complement(join(27348433..27348437,27349148..27349910)) /locus_tag="TCM_024632" /codon_start=1 /product="DTW domain-containing protein, putative" /protein_id="EOY09229.1" /db_xref="TAIR:AT2G41750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22945" /translation="MEEPEHDTNPIIATNSPPLSPPPQPRQLCTQCDRPLPVCLCHVL PTTPLQTKTKILIIRHPHESRHKLNTTPLLSKTLLNATTISSRRLLPHHLPNQSPPAI YLFPPSPSTPAVTLSQLKSTNLLNYQTTPLLLIVFDATWKHAKEMVGASEGVLKGFAA RVCLDGVDESVVGGSIYDSELVLRKEPFGGCVTTLEAVARCLGVIEPNGNEVQRVLIG ILREMVRLQAGFLKPVKPRTKMLKKNKHKEEGNSKID" gene 27351106..27354578 /locus_tag="TCM_024634" /note="dbxref CacaoGD:Thecc1EG024634" mRNA join(27351106..27351295,27351403..27351508, 27351948..27352025,27352155..27352282,27353190..27353314, 27354230..27354578) /locus_tag="TCM_024634" /product="N-terminal glutamine amidohydrolase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s05000.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s05000.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:PASA:2:TSA:puevd3b023823t1a2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14048t1" mRNA join(27351106..27351295,27351403..27351508, 27351948..27352025,27352155..27352282,27353190..27353314, 27354182..27354575) /locus_tag="TCM_024634" /product="N-terminal glutamine amidohydrolase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s05000.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s05000.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14048t1" CDS join(27351225..27351295,27351403..27351508, 27351948..27352025,27352155..27352282,27353190..27353314, 27354182..27354339) /locus_tag="TCM_024634" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="N-terminal glutamine amidohydrolase isoform 1" /protein_id="EOY09230.1" /db_xref="Phytozome:POPTR_0006s05000.1" /db_xref="TAIR:AT2G41760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22944" /translation="MTTLELQQLNSLDASDFNHTPCYCEENVYFLCKKLCSNGIADAQ GSDLFVVFISNDNKQIPLWHQKASNRADGVILWDYHAICIQRKRDGDTHLVWDLDSSL PFPCPLATYVSETVRPSFQLFSEFQRFFRVVHAPIFLCHFASDRRHMKDSEGNWTAQP PTYETIVAEDGSVHNLNEYIEIHAADVGKNLPADLTSAVYSQKHGVVIGEAQLEEFFS QIS" CDS join(27351225..27351295,27351403..27351508, 27351948..27352025,27352155..27352282,27353190..27353314, 27354230..27354339) /locus_tag="TCM_024634" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="N-terminal glutamine amidohydrolase isoform 2" /protein_id="EOY09231.1" /db_xref="Phytozome:POPTR_0006s05000.1" /db_xref="TAIR:AT2G41760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22944" /translation="MTTLELQQLNSLDASDFNHTPCYCEENVYFLCKKLCSNGIADAQ GSDLFVVFISNDNKQIPLWHQKASNRADGVILWDYHAICIQRKRDGDTHLVWDLDSSL PFPCPLATYVSETVRPSFQLFSEFQRFFRVVHAPIFLCHFASDRRHMKDSEGNWTAQP PTYETIVAEDVGKNLPADLTSAVYSQKHGVVIGEAQLEEFFSQIS" gene complement(27354776..27360961) /locus_tag="TCM_024635" /note="dbxref CacaoGD:Thecc1EG024635" mRNA complement(join(27354776..27355376,27355670..27356070, 27358904..27358982,27359193..27359314,27359981..27360067, 27360146..27360494,27360588..27360961)) /locus_tag="TCM_024635" /product="Adenine nucleotide alpha hydrolases-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033275001" /inference="similar to AA sequence:Phytozome:GSVIVT01033275001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g5988t2" CDS complement(join(27355328..27355376,27355670..27356070, 27358904..27358982,27359193..27359314,27359981..27360067, 27360146..27360494,27360588..27360895)) /locus_tag="TCM_024635" /codon_start=1 /product="Adenine nucleotide alpha hydrolases-like superfamily protein, putative" /protein_id="EOY09232.1" /db_xref="Phytozome:GSVIVT01033275001" /db_xref="TAIR:AT4G35910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O65628" /translation="MACNSATCNSSGCYKEYEVEEEQRQPTTRGGINGSATTHQNLCV KCKSNEPVCCGIGGDDARFCKDCFKTNLYGKFKQAVSYNAMITPSDKVLVAFSGGPSS RVVLQFVHEMQCRAQKNFDASKDRSLPVFGVGVAFIDESSIHSFASQDAEKAIEDIRS IVSNLAPPEKELYVVPIENIFSSDNIDGKERMKKLLDAVSDVTGKEDLLIHLRMLSLQ RVASQNRYTRVVLGSCTSRIACHVISATVKGQGYSLSADIQYVDSRWQVPVVLPLRDC PAQELNTLCSLDGLKIVELLNGPCSSINGLVSSFVKVLQEENPSRECTIVRTAGKLTP FHFNRIPDIHDSSVPLATRRRQKRHSIKPNGSLSSESFCPICNSPLNKSNFSSSLRSL QSNENSDIFAAAAACSSCQFQIIPKEPSLMEQFVSLLPQPLITRAKHGDRGDFSLLRE QIQEFLLSDGEDEI" mobile_element 27356382..27356670 /note="source:INTACT135F_F90_scaffold_2-int 12869 13160" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 27358635..27358849 /note="source:INTACT135F_F90_scaffold_2-int 13784 13998" /mobile_element_type="retrotransposon:LTR/Copia" gene 27361056..27365555 /locus_tag="TCM_024636" /note="dbxref CacaoGD:Thecc1EG024636" mRNA join(27361056..27361177,27361718..27361891, 27361980..27362029,27362122..27362191,27362298..27362403, 27362819..27362885,27363058..27363133,27364497..27364792, 27365181..27365555) /locus_tag="TCM_024636" /product="3'-5'-exoribonuclease family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033276001" /inference="similar to AA sequence:Phytozome:POPTR_0006s04970.2" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g05379t00001" CDS join(27361732..27361891,27361980..27362029, 27362122..27362191,27362298..27362403,27362819..27362885, 27363058..27363133,27364497..27364792,27365181..27365264) /locus_tag="TCM_024636" /codon_start=1 /product="3'-5'-exoribonuclease family protein" /protein_id="EOY09233.1" /db_xref="Phytozome:POPTR_0006s04970.2" /db_xref="TAIR:AT1G60080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9II78" /translation="MGLPNASGDLSTEVEVDAFRRLFPLRFYEKHLSESIRPDARPLG RARDTTIALGAVASANGSALAKIGSTTMLAAIKMEVMTPSTETPDEGCVAIDFHMPPI CSPIVRPGRPAEAAPVVSKQLSDTILSSGMISLKELCLVSGKAAWMAYLDIYCLDADG ALFDTALLSAVAAFSHLEIPVVSLNDDGKIVLLSEEQEGMSEREPVNKEKRKLTLCSI PFSLTCILHKNYILADPTAEEESIMETLVTIVLDSSSQLVSLYKPGGPVLAYTSAIQD CIAITRQRVKELQKILEEAISVMEVD" gene 27365606..27368159 /locus_tag="TCM_024637" /note="dbxref CacaoGD:Thecc1EG024637" mRNA join(27365606..27366009,27366156..27366302, 27366983..27367128,27367315..27368159) /locus_tag="TCM_024637" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.35 coverage" CDS join(27365709..27366009,27366156..27366302, 27366983..27367128,27367315..27367353) /locus_tag="TCM_024637" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09234.1" /translation="MCFREPFLTRFQLDSLNLELTSCAPAVFQFLVGDELALDSGGGC KGCHSTHSNLSFLCPSEVTFSPRKEINGEQNLKSSLLLQSRGPQKSLSPGLVVKEFPS ALTLRILLCIPRGRGHGFLTLGALMFEEQLVESWLVLLDWLRSVRRKLKFDNKSKVKR RLEVWPVVGHKYIWRKQRRVTGPHPLRTDLWASALGVNENNDHFSLLETY" gene 27366656..27374138 /locus_tag="TCM_024638" /note="dbxref CacaoGD:Thecc1EG024638" mRNA join(27366656..27367128,27367315..27367427, 27368133..27369781,27370158..27370240,27370848..27372650, 27372874..27373350,27373491..27374138) /locus_tag="TCM_024638" /product="Magnesium-chelatase subunit chl isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g32070.1" /inference="similar to AA sequence:Phytozome:Glyma19g32070.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02812t00001" mRNA join(27367681..27369781,27370158..27370240, 27370848..27372483,27372557..27372650,27372874..27373162) /locus_tag="TCM_024638" /product="Magnesium-chelatase subunit chl isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g32070.1" /inference="similar to AA sequence:Phytozome:Glyma10g20570.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc290t8; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc371t12; inference alignment:Newbler:10:TSA:cgbaL_g02812t00001" CDS join(27368374..27369781,27370158..27370240, 27370848..27372650,27372874..27373350,27373491..27373868) /locus_tag="TCM_024638" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Magnesium-chelatase subunit chl isoform 1" /protein_id="EOY09235.1" /db_xref="Phytozome:Glyma19g32070.1" /db_xref="TAIR:AT5G13630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RY14" /translation="MASLVSSPFTLPSSKPDQISSLSQKHFFLHSFLPKKTNNQPNSK SSLKVKCAVTGNGLFTQTTPEVRRIVPEKKDNLPTVKIVYVVLEAQYQSSLSNAVQSL NQTSNFALFEVVGYLVEELRDESTYKTFCKDLEDANIFIGSLIFVEELALKVKAAVEK ERDRLDAVLVFPSMPEVMRLNKLGSFSMSQLGQSKSPFFKLFKRKKQGAGFADSMLKL VRTLPKVLKYLPSDKAQDARLYILSLQFWLGGSPDNLQNFLKMISGSYVPALKGTKID YSDPVLFLDSGIWHPIAPSMYDDVKEYLNWYGTRRDVNEKLRGPNAPVIGLVLQRSHI VTGDESHYVAVIMELEARGAKVIPIFAGGLDFSGPVERFLIDPVTKKPMVNSVVSLTG FALVGGPARQDHPRAVEALMKLDVPYIVALPLVFQTTEEWLNSTLGLHPIQVALQVAL PELDGGMEPIVFAGRDPRTGKSHALHKRVEQLCTRAIKWAELKRKSKTQKKLAITVFS FPPDKGNVGTAAYLNVFASIYSVLKDLEKDGYNVEGLPETAEALIEDVIHDKEAQFNS PNLNVAYKMSVREYQGLTPYATALEENWGKPPGNLNSDGENLLVYGKQYGNVFIGVQP TFGYEGDPMRLLFSKSASPHHGFAAYYSFVEKIFKADAVLHFGTHGSLEFMPGKQVGM SDVCYPDSLIGNIPNVYYYAANNPSEATIAKRRSYANTISYLTPPAENAGLYKGLKQL SELISSYQSLKDSGRGQQIVNSIISTAKQCNLDKDVQLPDEGEEISAKERDLVVGKVY SKIMEIESRLLPCGLHVIGEPPSAMEAVATLVNIAALDRPEDAIISLPAILAGSVGRN IEDVYRGSDKGILKDVELLRQITEASRGAISAFVERTTNKKGQVVDVADKLSSILGFG INEPWIQYLSSTKFYRADRENLRVLFEFLGECLKLVVADNELGSLKQALEGKYVEPGP GGDPIRNPKVLPTGKNIHALDPQAIPTAAAMQSAKIVVDRLIERQKVDNGGKYPETIA LVLWGTDNIKTYGESLGQVLWMIGVRPVADTFGRVNRVEAVSLEELGRPRIDVVVNCS GVFRDLFINQMNLLDRAVKMVAELDETVEQNYVRKHAFEQAQALGIEVREAATRVFSN ASGSYSSNVNLAVENSSWNDEKQLQDMYLSRKSFAFDCDAPGAGMTEKRKVFEMALST ADATFQNLDSSEISLTDVSHYFDSDPTNLVQNLRKDGKKPSAYIADTTTANAQVRTLS ETVRLDARTKLLNPKWYEGMMSSGYEGAREIEKRLTNTVGWSATSGQVDNWVYEEANS TFIQDENMLNRLMSTNPNSFRKLVQTFLEANGRGYWETSEDNIERLRQLYSEVEDKIE GIDR" CDS join(27368374..27369781,27370158..27370240, 27370848..27372483,27372557..27372645) /locus_tag="TCM_024638" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Magnesium-chelatase subunit chl isoform 2" /protein_id="EOY09236.1" /db_xref="Phytozome:Glyma10g20570.1" /db_xref="TAIR:AT5G13630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RY14" /translation="MASLVSSPFTLPSSKPDQISSLSQKHFFLHSFLPKKTNNQPNSK SSLKVKCAVTGNGLFTQTTPEVRRIVPEKKDNLPTVKIVYVVLEAQYQSSLSNAVQSL NQTSNFALFEVVGYLVEELRDESTYKTFCKDLEDANIFIGSLIFVEELALKVKAAVEK ERDRLDAVLVFPSMPEVMRLNKLGSFSMSQLGQSKSPFFKLFKRKKQGAGFADSMLKL VRTLPKVLKYLPSDKAQDARLYILSLQFWLGGSPDNLQNFLKMISGSYVPALKGTKID YSDPVLFLDSGIWHPIAPSMYDDVKEYLNWYGTRRDVNEKLRGPNAPVIGLVLQRSHI VTGDESHYVAVIMELEARGAKVIPIFAGGLDFSGPVERFLIDPVTKKPMVNSVVSLTG FALVGGPARQDHPRAVEALMKLDVPYIVALPLVFQTTEEWLNSTLGLHPIQVALQVAL PELDGGMEPIVFAGRDPRTGKSHALHKRVEQLCTRAIKWAELKRKSKTQKKLAITVFS FPPDKGNVGTAAYLNVFASIYSVLKDLEKDGYNVEGLPETAEALIEDVIHDKEAQFNS PNLNVAYKMSVREYQGLTPYATALEENWGKPPGNLNSDGENLLVYGKQYGNVFIGVQP TFGYEGDPMRLLFSKSASPHHGFAAYYSFVEKIFKADAVLHFGTHGSLEFMPGKQVGM SDVCYPDSLIGNIPNVYYYAANNPSEATIAKRRSYANTISYLTPPAENAGLYKGLKQL SELISSYQSLKDSGRGQQIVNSIISTAKQCNLDKDVQLPDEGEEISAKERDLVVGKVY SKIMEIESRLLPCGLHVIGEPPSAMEAVATLVNIAALDRPEDAIISLPAILAGSVGRN IEDVYRGSDKGILKDVELLRQITEASRGAISAFVERTTNKKGQVVDVADKLSSILGFG INEPWIQYLSSTKFYRADRENLRVLFEFLGECLKLVVADNELGSLKQALEGKYVEPGP GGDPIRNPKVLPTGKNIHALDPQAIPTAAAMQSAKIVVDRLIERQKVDNGGKYPETIA LVLWGTDNIKTYGWKQLVLKSLAGPGLMLLLIALEFSEIYS" gene complement(27374479..27379871) /locus_tag="TCM_024639" /note="dbxref CacaoGD:Thecc1EG024639" mRNA complement(join(27374479..27375478,27375843..27375969, 27377749..27379871)) /locus_tag="TCM_024639" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s05600.1" /inference="similar to AA sequence:ricco:29010.m000223" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6010t2" mRNA complement(join(27374639..27375478,27375840..27375969, 27377749..27379726)) /locus_tag="TCM_024639" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s05600.1" /inference="similar to AA sequence:ricco:29010.m000223" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6010t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6010t2" CDS complement(join(27375005..27375478,27375843..27375969, 27377749..27379448)) /locus_tag="TCM_024639" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29010.m000223" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY09237.1" /db_xref="TAIR:AT2G41770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22943" /translation="MLVQDRAVPKSPKRPQIRTLPTLQQGRFAEPKNLDFSTWVSENF YRIITIFVLISTIAAVFFLYTSTNTASLLCLQSQTQHAIDSISLPQLKWNSIKPIADK TSPYANFRSEQWVVVSVSNYPSDALKKMVKVKGWQVLAIGNSRTPRDWSLKGAIFLSL DMQANLGFRVVDHLPYDSYVRKSVGYLFAIQHGAKKIFDADDRGEIIDNDLGKHFDVE LVGEGARQEVILQYSHDNPNRTVINPYIHFGQRSVWPRGLPLENVGEIGHEEFYTEVF GGKQFIQQGISNGLPDVDSVFYFTRKSRLEAFDIRFDEHAPKVALPQGMMVPLNSFNT IYHSSAFWALMLPVSVSTMASDVLRGYWGQRLLWEIGGYVVVYPATVHRYDRIEAYPF SEEKDLHVNVGRLIKFLVSWRSNKHRLFEKILELSYAMAEEGFWTEQDVRFTAAWLQD LLAVGYQQPRLMSLELDRPRANIGHGDRKDFIPQKLPSVHLAVEETGTVSYEIGNLIR WRKNFGNVVLIMFCSGPVERTALEWRLLYGRIFKTVFILSAQKNSDLAVEEGQLDQIY KHLPKIFDRFSSADGFLFLEDDTILNYWNLLQADKTKLWIADKVSMSWTTASTNGNSD WYSKQADMVKKVVSTMPVHFQVNYKEVVRSDQSLTICSSEIFYIPRRFVADFVDLVNL VGHLEIHQKVAIPMFFLSMDLPQNFDSVLRKMVYKQDLPSTNSSSTYYSAQAPAVHPW KVSSEQEFIKLIRIMAEGDPLLMELV" CDS complement(join(27375005..27375478,27375840..27375969, 27377749..27379448)) /locus_tag="TCM_024639" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29010.m000223" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY09238.1" /db_xref="TAIR:AT2G41770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22943" /translation="MLVQDRAVPKSPKRPQIRTLPTLQQGRFAEPKNLDFSTWVSENF YRIITIFVLISTIAAVFFLYTSTNTASLLCLQSQTQHAIDSISLPQLKWNSIKPIADK TSPYANFRSEQWVVVSVSNYPSDALKKMVKVKGWQVLAIGNSRTPRDWSLKGAIFLSL DMQANLGFRVVDHLPYDSYVRKSVGYLFAIQHGAKKIFDADDRGEIIDNDLGKHFDVE LVGEGARQEVILQYSHDNPNRTVINPYIHFGQRSVWPRGLPLENVGEIGHEEFYTEVF GGKQFIQQGISNGLPDVDSVFYFTRKSRLEAFDIRFDEHAPKVALPQGMMVPLNSFNT IYHSSAFWALMLPVSVSTMASDVLRGYWGQRLLWEIGGYVVVYPATVHRYDRIEAYPF SEEKDLHVNVGRLIKFLVSWRSNKHRLFEKILELSYAMAEEGFWTEQDVRFTAAWLQD LLAVGYQQPRLMSLELDRPRANIGHGDRKDFIPQKLPSVHLAVEETGTVSYEIGNLIR WRKNFGNVVLIMFCSGPVERTALEWRLLYGRIFKTVFILSAQKNSDLAVEEGQLDQIY KHLPKIFDRFSSADGFLFLEDDTILNYWNLLQADKTKLWIADKVVSMSWTTASTNGNS DWYSKQADMVKKVVSTMPVHFQVNYKEVVRSDQSLTICSSEIFYIPRRFVADFVDLVN LVGHLEIHQKVAIPMFFLSMDLPQNFDSVLRKMVYKQDLPSTNSSSTYYSAQAPAVHP WKVSSEQEFIKLIRIMAEGDPLLMELV" mobile_element 27381375..27382930 /note="source:CACAO_M_E43972_F17_scaffold_5 1 1556" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27386100..27387889 /note="source:INTACT1604F_F75_scaffold_10-int 3780 5568" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(27387971..27389487) /note="source:CACAO_M_S_E119421_F17_scaffold_9 9 1535" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27391159..27394256 /note="source:CACAO_M_E43974_F42_scaffold_5 1 3098" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27394460..27394619) /note="source:INTACT648_F285_scaffold_10-int 4296 4458" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27395759..27395873 /note="source:scaffold_4_CACTA_0495 27 153" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(27395810..27398792) /note="source:INTACT648_F285_scaffold_10-int 675 3804" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 27400050..27402215 /locus_tag="TCM_024640" /note="dbxref CacaoGD:Thecc1EG024640" mRNA join(27400050..27400327,27400415..27400601, 27401317..27401648,27401954..27402215) /locus_tag="TCM_024640" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s04940.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s04940.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.33 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc4332t1" CDS join(27400254..27400327,27400415..27400601, 27401317..27401648,27401954..27402104) /locus_tag="TCM_024640" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09239.1" /db_xref="Phytozome:POPTR_0006s04940.1" /db_xref="TAIR:AT3G57440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9U5" /translation="MASFPSPLERTVASALLLLSTPPSKLMISCCDGERRGKIMSEER LSLMSSSESKSCTSSLTTDQLSSRRQKLRIIAAVARCHEIKLKVVKKRRSKIYRSSNN RKIPSFKSLISSNMATEMSCLSSGSSGISSARIQLKTTKAEKMQAAKQRKRRSGGSTH MRRRAEAILKLLSGGCFSEVNIRRVLGDSPDTSKALRMLLKQEEVKRSGTGGQKDPYI YTVINFDATFNCLFFIRFELRNNISIVPS" gene 27405076..27405867 /locus_tag="TCM_024641" /note="dbxref CacaoGD:Thecc1EG024641" mRNA join(27405076..27405424,27405504..27405516, 27405641..27405867) /locus_tag="TCM_024641" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29010.m000221" /inference="similar to AA sequence:ricco:29010.m000221" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc3648t1" CDS join(27405174..27405424,27405504..27405516, 27405641..27405718) /locus_tag="TCM_024641" /note="dbxref ricco:29010.m000221" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09240.1" /translation="MGKYMELLDAGVRIAARFHSHCPQTARLYYHPPSNPEGHHDYHH EARAGSGSTGQVQDPTLVLSCGAKAAKGLESTELIFYSVVIGDALIQEGVRLYILFKN LVEGGSSYVKQ" mobile_element complement(27405805..27405931) /note="source:CACAO_M_S_E5285_F300_scaffold_1 1514 1636" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(27405935..27407681) /note="source:CACAO_M_S_E64573_F3_scaffold_5 2 1749" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27407682..27407711 /note="source:CACAO_M_E12058_F3_scaffold_2 1695 1719" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27407686..27407868 /note="source:INTACT686_F300_scaffold_3-int 125 308" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 27407868..27416205 /note="source:CACAO_M_E84368_F4_scaffold_10 4862 13208" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(27427786..27428853) /locus_tag="TCM_024645" /note="dbxref CacaoGD:Thecc1EG024645" mRNA complement(27427786..27428853) /locus_tag="TCM_024645" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS complement(27428613..27428840) /locus_tag="TCM_024645" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09241.1" /translation="MRSLVSSSMLRQIQPHASVMGVFSLHPYGPQPCPFLGHFGGLLG QGWSPLTRSLMQKQNLEHLYAQSVEPFSLSF" gene complement(27430207..27452071) /locus_tag="TCM_024646" /note="dbxref CacaoGD:Thecc1EG024646" mRNA complement(join(27430207..27430595,27430696..27431087, 27431297..27431419,27432892..27432978,27433057..27433108, 27433189..27433313,27436015..27436223,27436340..27436541, 27439428..27439532,27440600..27440661,27440898..27441087, 27441202..27441297,27441429..27441531,27442024..27442127, 27445299..27445385,27446186..27446271,27446446..27446538, 27447548..27447710,27447858..27447970,27448090..27448212, 27448869..27448920,27449684..27449727,27449828..27449901, 27450000..27450091,27450800..27450867,27451179..27451254, 27451341..27451722,27451974..27452071)) /locus_tag="TCM_024646" /product="Insulinase (Peptidase family M16) family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29010.m000218" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024665t1" /inference="similar to AA sequence:ricco:29010.m000218" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc287t8" CDS complement(join(27430842..27431087,27431297..27431419, 27432892..27432978,27433057..27433108,27433189..27433313, 27436015..27436223,27436340..27436541,27439428..27439532, 27440600..27440661,27440898..27441087,27441202..27441297, 27441429..27441531,27442024..27442127,27445299..27445385, 27446186..27446271,27446446..27446538,27447548..27447710, 27447858..27447970,27448090..27448212,27448869..27448920, 27449684..27449727,27449828..27449901,27450000..27450091, 27450800..27450867,27451179..27451254,27451341..27451463)) /locus_tag="TCM_024646" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29010.m000218; paralog of Thecc1EG024665t1" /codon_start=1 /product="Insulinase (Peptidase family M16) family protein isoform 1" /protein_id="EOY09242.1" /db_xref="TAIR:AT2G41790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9U3" /translation="MAVGKEDVEIIKPRTDKREYRRIVLRNSLQVLLVSDPDTDKCAA SMNVGVGSFCDPVGLEGLAHFLEHMLFYASEKYPLEDSYSKYITEHGGSTNAFTASEQ TNYYFDVNTDCFEEALDRFAQFFIKPLMSADATTREIKAVDSENQKNLLSDAWRMNQL QKHLSSESHPYHKFSTGNWKTLEVRPKAKGVDTRQELLKFYEDNYSANLMHLVVYAKE SLDKVQSLVEDKFQEIRNSDRSCFLFRGQPCTSEHLQILVRAVPIKQGHKLRIIWPIP PSIRLYKEGPCRYLGHLIGHEGEGSLFYVLKTLGWATGLSAGEGEWTLEFSFFKVVID LTDAGHDHMQDIVGLLFKYVQLLQQSGVCEWIFDELSAVCETGFHYQDKFPPIDYVVN IASNMQIYPPKDWLVGSSLPSNFNPDTIQMILNELCPENVRIFWESQKFEGLTDKVEP WYGTAYSIEKVTPSIVQEWMSLAPMEKLHLPAPNVFIPTDLSLKSSQEKVKFPVLLRK SSYSKLWYKPDTMFSTPKAYVKIDFNCPYASNSPEAEVLADIFARLLMDYLNEYAYYA QVAGLYYGIIHTDSGFEVTLVGYNHKLRILLETVVDKIAKFEVKPDRFSVIKEMVMKD YQNFKFQQPYQQAMYNCSLILEDQTWPWMEQLEVLPHLNAEDLAKFATMMLSRAFLEC YIAGNIEQEEAESMIQLVEDVFFKGSKPICQPLFLSQHLTNRVVKLERGMNYFYSKEG LNPSDENSALVHYIQVHRDDFILNVKLQLFALIAKQPAFHQLRSVEQLGYITVLMQRN DSGIRGVQFIIQSTVKGPGHIDLRVEAFLRMFESKLYEMTNDEFKSNINALIDMKLEK HKNLREESRFYWREISDGTLKFDRREAEVAALRQLTQQELIDFFNENIKVGATQKKTL SVRVYGNQHLSEINSDKSEPSQPHTIQIDDIFSFRRSQPLYGSFKGGFMKL" mRNA complement(join(27431063..27431087,27431267..27431419, 27432892..27432978,27433057..27433108,27433189..27433313, 27436015..27436223,27436340..27436541,27439428..27439532, 27440600..27440661,27440898..27441087,27441202..27441297, 27441429..27441531,27442024..27442127,27445299..27445385, 27446186..27446271,27446446..27446538,27447548..27447710, 27447858..27447970,27448090..27448212,27448869..27448920, 27449684..27449727,27449828..27449901,27450000..27450091, 27450800..27450867,27451179..27451254,27451341..27451590)) /locus_tag="TCM_024646" /product="Insulinase (Peptidase family M16) family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29010.m000218" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024665t1" /inference="similar to AA sequence:ricco:29010.m000218" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc295t5; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc287t8" CDS complement(join(27431279..27431419,27432892..27432978, 27433057..27433108,27433189..27433313,27436015..27436223, 27436340..27436541,27439428..27439532,27440600..27440661, 27440898..27441087,27441202..27441297,27441429..27441531, 27442024..27442127,27445299..27445385,27446186..27446271, 27446446..27446538,27447548..27447710,27447858..27447970, 27448090..27448212,27448869..27448920,27449684..27449727, 27449828..27449901,27450000..27450091,27450800..27450867, 27451179..27451254,27451341..27451463)) /locus_tag="TCM_024646" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29010.m000218; paralog of Thecc1EG024665t1" /codon_start=1 /product="Insulinase (Peptidase family M16) family protein isoform 2" /protein_id="EOY09243.1" /db_xref="TAIR:AT2G41790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9U3" /translation="MAVGKEDVEIIKPRTDKREYRRIVLRNSLQVLLVSDPDTDKCAA SMNVGVGSFCDPVGLEGLAHFLEHMLFYASEKYPLEDSYSKYITEHGGSTNAFTASEQ TNYYFDVNTDCFEEALDRFAQFFIKPLMSADATTREIKAVDSENQKNLLSDAWRMNQL QKHLSSESHPYHKFSTGNWKTLEVRPKAKGVDTRQELLKFYEDNYSANLMHLVVYAKE SLDKVQSLVEDKFQEIRNSDRSCFLFRGQPCTSEHLQILVRAVPIKQGHKLRIIWPIP PSIRLYKEGPCRYLGHLIGHEGEGSLFYVLKTLGWATGLSAGEGEWTLEFSFFKVVID LTDAGHDHMQDIVGLLFKYVQLLQQSGVCEWIFDELSAVCETGFHYQDKFPPIDYVVN IASNMQIYPPKDWLVGSSLPSNFNPDTIQMILNELCPENVRIFWESQKFEGLTDKVEP WYGTAYSIEKVTPSIVQEWMSLAPMEKLHLPAPNVFIPTDLSLKSSQEKVKFPVLLRK SSYSKLWYKPDTMFSTPKAYVKIDFNCPYASNSPEAEVLADIFARLLMDYLNEYAYYA QVAGLYYGIIHTDSGFEVTLVGYNHKLRILLETVVDKIAKFEVKPDRFSVIKEMVMKD YQNFKFQQPYQQAMYNCSLILEDQTWPWMEQLEVLPHLNAEDLAKFATMMLSRAFLEC YIAGNIEQEEAESMIQLVEDVFFKGSKPICQPLFLSQHLTNRVVKLERGMNYFYSKEG LNPSDENSALVHYIQVHRDDFILNVKLQLFALIAKQPAFHQLRSVEQLGYITVLMQRN DSGIRGVQFIIQSTVKGPGHIDLRVEAFLRMFESKLYEMTNDEFKSNINALIDMKLEK HKNLREESRFYWREISDGTLKFDRREAEVCRSI" mobile_element 27451754..27469363 /note="source:scaffold_5_CACTA_0607 1 17610" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(27470041..27471197) /note="source:INTACT1604F_F75_scaffold_10-int 3850 5024" /mobile_element_type="retrotransposon:LTR/Copia" gene 27471042..27474150 /locus_tag="TCM_024649" /note="dbxref CacaoGD:Thecc1EG024649" mRNA join(27471042..27471127,27473604..27473716, 27473807..27474150) /locus_tag="TCM_024649" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026293t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" mobile_element complement(27472478..27472931) /note="source:INTACT1604F_F75_scaffold_10-int 2904 3421" /mobile_element_type="retrotransposon:LTR/Copia" CDS join(27473710..27473716,27473807..27474105) /locus_tag="TCM_024649" /note="paralog of Thecc1EG026293t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09244.1" /translation="MGENFQCVVFNLNAPFDATNKLSLWEDIFSFHSHYIMSWCCAGD FNTIRCLEERTRCTHSGLGMTKFNDFIDLCELTDLPLVGKKFTRYRSNYKCSCINRL" mobile_element complement(27476903..27477845) /note="source:CACAO_M_E10730_F318_scaffold_2 1912 2856" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27477844..27478116) /note="source:CACAO_M_E85507_F96_scaffold_11 6098 6370" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27478217..27479148 /note="source:CACAO_M_E22886_F96_scaffold_3 4362 5293" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27479251..27483475) /note="source:CACAO_M_E23328_F322_scaffold_4 1749 5253" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27483576..27484126) /note="source:CACAO_M_E5569_F322_scaffold_2 5276 5826" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27484227..27484929) /note="source:CACAO_M_E13201_F318_scaffold_3 956 1657" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27487505..27488029) /note="source:INTACT410F_F357_scaffold_4-int 4323 4845" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27491183..27491553) /note="source:INTACT151F_F342_scaffold_2-int 477 852" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27491558..27493383) /note="source:CACAO_M_E12097_F20_scaffold_2 8161 9988" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27495292..27495333) /note="source:CACAO_M_S_E99574_F14_scaffold_9 1883 1925" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27495665..27495807 /note="source:INTACT146F_F14_scaffold_2-int 16320 16463" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27496659..27496815) /note="source:CACAO_M_E35511_F5_scaffold_5 405 561" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27496719..27496813 /note="source:CACAO_M_E70891_F369_scaffold_10 2632 2726" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27496901..27498581) /note="source:CACAO_M_E44210_F112_scaffold_5 13676 15349" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(27499382..27677965) /locus_tag="TCM_024651" /note="dbxref CacaoGD:Thecc1EG024651" mRNA complement(join(27499382..27499530,27500359..27500691, 27500889..27501011,27502176..27502262,27502497..27502548, 27503974..27504098,27506295..27506503,27515315..27515516, 27518296..27518400,27518899..27518960,27519067..27519256, 27519343..27519438,27519576..27519678,27540655..27540758, 27540920..27541006,27541605..27541690,27542565..27542656, 27677799..27677965)) /locus_tag="TCM_024651" /product="Insulinase (Peptidase family M16) family protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400047372" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024665t1" /inference="similar to AA sequence:ricco:29010.m000218" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc358t6" mobile_element complement(27499450..27499569) /note="source:CACAO_M_S_E14849_F156_scaffold_2 709 833" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27499495..27499579 /note="source:INTACT146F_F14_scaffold_2-int 13456 13535" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27500261..27500362 /note="source:INTACT676_F297_scaffold_3-int 1161 1282" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27500273..27500367) /note="source:CACAO_M_E72142_F322_scaffold_10 745 822" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(27500440..27500691,27500889..27501011, 27502176..27502262,27502497..27502548,27503974..27504098, 27506295..27506503,27515315..27515516,27518296..27518400, 27518899..27518960,27519067..27519256,27519343..27519438, 27519576..27519678,27540655..27540758,27540920..27541006, 27541605..27541685)) /locus_tag="TCM_024651" /note="dbxref ricco:29010.m000218; paralog of Thecc1EG024665t1" /codon_start=1 /product="Insulinase (Peptidase family M16) family protein" /protein_id="EOY09245.1" /db_xref="TAIR:AT2G41790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9U3" /translation="MQDIVGLLFKYIQLLKQTSVCKRVFEELSAVCETKFHYPDKIQP LNYVIRIASNMEKYPPKDWLVGSSLLSNFNPDVVHMFLREFSPENVRIFWKSKKFEGD TDKVEPWFGTAYTVEKITTSMIQKWMSSAPSDNLQLPAPNMFIPTNLSLKVAQEKVKF PVLLRKSSYSKLWYKPDTMFSVPKAFVNIEFNCPHVRDSPQAEVLANIFVQLLEDYLN EHAYDAQIAGLHYYTSRTDTGFKVTVFGYNDKLNILLETVVDKIANFEVKRDRFAIIK EMMTKGIYNFKYEKPSQLAIEYRSLILRDIKWPWKEKLDVLPNLEVEDLVKFTPIMFS SAFLECFIAGNMERDEAISIIQHVESIFFEGSNPKCQPLFPSLHLTNEVVKFGRGVSY LYSVQGLNPSNENSALLHYIQVHRDDFILNVKLQLFCLIAKEPAYHQLCSIEQLGYIN NFYGRYDFGIHGVEFLIQSTMKSPRDIDLSIEAFLEMFENKIYEMTNDEFKGNVNALI DMKLETHKNLWEESLFYWQEIMNGTLKFDRKEAEVEALRQVTQQEFIDFFNEYIKVGS HRKKTLSVRVYGKKHLSEYRSEKSEPLQLHSLRIDDILSFRRSQPHYGSFKGSFSNMK L" mobile_element 27509967..27513892 /note="source:INTACT803_F10_scaffold_6-int 1 3937" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(27520008..27520056) /note="source:CACAO_M_E14490_F322_scaffold_3 410 457" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 27520265..27523239 /locus_tag="TCM_024653" /note="dbxref CacaoGD:Thecc1EG024653" mRNA join(27520265..27521158,27523215..27523239) /locus_tag="TCM_024653" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS 27520561..27521025 /locus_tag="TCM_024653" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09246.1" /translation="MEVFDTFGRSLGEKVNHSKIVFYYARNVGNNLLRHLEQRLGFSL THDLGTYLDIPINHGWRCLKHYQYMVERVQKKLTGWKTNTLFFVGRLTLVQSILLSMS CYVMKALVILQAIYEKIGKKNCMMFFWGSMGLIGKFILLNAHRYIGQKSLVA" mobile_element 27521192..27521999 /note="source:CACAO_M_E69780_F2_scaffold_9 3508 4336" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27523221..27523302) /note="source:INTACT287_F193_scaffold_2-int 9236 9336" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 27523266..27523317 /note="source:INTACT639F_F363_scaffold_5-int 1240 1291" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 27523293..27523353 /note="source:CACAO_M_E49809_F2_scaffold_7 2391 2452" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27523304..27525767) /note="source:INTACT707_F2_scaffold_1-int 1215 3689" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27525747..27526880 /note="source:CACAO_M_E69780_F2_scaffold_9 3223 4336" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 27526307..27540602 /locus_tag="TCM_024654" /note="dbxref CacaoGD:Thecc1EG024654" mRNA join(27526307..27526475,27539501..27539788, 27540333..27540602) /locus_tag="TCM_024654" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.32 coverage" mobile_element 27529061..27530457 /note="source:INTACT639F_F363_scaffold_5-int 10719 12108" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(27531071..27531193) /note="source:CACAO_M_E315_F14_scaffold_1 1023 1142" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(27539643..27539788,27540333..27540429) /locus_tag="TCM_024654" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09247.1" /translation="MVITGGKKQNPFKGKMWEIKGLVSPVKLQSFHWIKVVEEGKDNI EEEIWYRAVVLALSTFFKFTGSCINVIGFVNQGFVY" gene complement(27553087..27574670) /locus_tag="TCM_024656" /note="dbxref CacaoGD:Thecc1EG024656" mRNA complement(join(27553087..27553355,27554077..27554239, 27554430..27554542,27554906..27554963,27556429..27556512, 27556614..27556832,27568361..27568483,27568857..27568908, 27574629..27574670)) /locus_tag="TCM_024656" /product="Insulinase (Peptidase family M16) family protein" /inference="similar to AA sequence:Phytozome:GSVIVT01033283001" /note="quality class is weak, express is weak, homology is paralog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.31 coverage" CDS complement(join(27553174..27553355,27554077..27554239, 27554430..27554542,27554906..27554963,27556429..27556512, 27556614..27556829)) /locus_tag="TCM_024656" /codon_start=1 /product="Insulinase (Peptidase family M16) family protein" /protein_id="EOY09248.1" /db_xref="Phytozome:GSVIVT01033283001" /db_xref="TAIR:AT2G41790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9U3" /translation="MLWIKANKSIGKIKENRWWMEKWKLNPMAVCKVPRSISIYVPSE LKFNVDSQAHGKLDSARWVSVLRDSNGQVGSNGLIVESNSKITISKVKESKLCPWKVC NVRDLCKAIQANELACLESLDEIQSLVENKFQDIRNSNQRGFQSTGLPFKSEHLMILV KAVPIKERHKLTVAWPITPSRHHYKEGPCHYLSRVIGHKGEGSVYHTLQKLEKALSND IEAWTKSFVDFLSWFYPISHWKELVTSEDKKGNEMIIFIMYKPQYFVTHGKAT" gene complement(27554026..27588450) /locus_tag="TCM_024657" /note="dbxref CacaoGD:Thecc1EG024657" mRNA complement(join(27554026..27554239,27554430..27554542, 27568361..27568483,27568857..27568908,27584748..27584821, 27584954..27585045,27585449..27585522,27585834..27585909, 27586011..27586097,27588129..27588259,27588376..27588450)) /locus_tag="TCM_024657" /product="Insulinase (Peptidase family M16) family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024665t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s04920.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc938t6" gene complement(27554200..27573492) /locus_tag="TCM_024658" /note="dbxref CacaoGD:Thecc1EG024658" mRNA complement(join(27554200..27554239,27560296..27560685, 27560764..27561230,27561747..27561883,27562963..27563285, 27563379..27563495,27563667..27564063,27567166..27567284, 27570087..27570289,27570653..27571054,27571259..27571431, 27573385..27573492)) /locus_tag="TCM_024658" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.15 coverage" mobile_element complement(27554978..27555582) /note="source:INTACT135F_F90_scaffold_2-int 13391 13998" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(27555416..27555614) /note="source:scaffold_9_CACTA_0943 5658 5858" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(27560316..27560685,27560764..27561230, 27561747..27561883,27562963..27563285,27563379..27563495, 27563667..27564063,27567166..27567284,27570087..27570289, 27570653..27571054,27571259..27571431,27573385..27573400)) /locus_tag="TCM_024658" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09250.1" /translation="MTLYLGMSSFMRAFFPSKSQHKLSIKKQFLKHLVSIILSPIISI SILIIIQTLIFLFMIIILLRHIIVIYHLHHHTMSLNILFKIFYLSIYYLILIKLLLFL CPMLMSQKLIIKRFSLSLEECHESKIDALEDNGTWSVVPLPSDSHFIDSKWVYKVKMN ADGNVERYNVRFAAKGYNQRESFDYQETFSPMAKQPTATNDVMQYLSSKFKLKDLRCV KYFLSLEVARSDTRITIYQQKYTLGLLKELGLLGAKLVFAPMDYNQKPICVCKSNYAE VMAIKVALEDFYQSKQVVKNALMVEFNHFFNGNNYPMWAVKMKAYLKAFDLWEVVEVG GDPPARQANPTIAQMKQYNEEVAKRFKALSCIHSVVTDAVFVRIMACESAKEAWDKIK EEFHGSDHTRQIQILNLLRKFEVLKMKDEETMKNYFDKVLRVVNQALRQEDHVEATLA ARRVDKRTSSGSHKKFEHEKKDKDKRPHVKCRACNQKGHVEKVCKNKENRVEEKAAIM EQKEDAEETLFMVIESNDLEKDSIWLIDSACSMHITGKIKNFLDLNKAYKSTVEIRDG NLLEIEGRGTVGITTKKVFNEDLHWNWMKNEIAENNNDNVAINLDVFEEEAGHELDDN IDDIPAPRAWYEKIDGYLRSNKFFRSESEPTLYVKSSLGKIQLIVSVYVDDLLIIGSN KTDLKSFKNKMKSEFDMSELGEMSYFLGLEIQQRSEFICLHQKKYARKLLKRFKMEGC KPMSTPLATATKLCKDDGRTLVDVTQYRKLIGCLLYLSASRLDIMYVRGTLNYGFLYG QVENKELEGYSDSDWARSYDDLKSTGGYCFSFGSAMFSWNSKKQDIIAQSSAKAEYVA AASATNQALWLKKVLLDLKFEQINPTVLWLDNQSAIALAKDPINTRSCEEQ" CDS complement(join(27568868..27568908,27584748..27584821, 27584954..27585045,27585449..27585522,27585834..27585909, 27586011..27586097,27588129..27588259,27588376..27588424)) /locus_tag="TCM_024657" /note="paralog of Thecc1EG024665t1" /codon_start=1 /product="Insulinase (Peptidase family M16) family protein, putative" /protein_id="EOY09249.1" /db_xref="Phytozome:POPTR_0006s04920.1" /db_xref="TAIR:AT3G57470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22941" /translation="MPGGSLLVPTSELACGDAIENKEEQCDDEDSLDLDGTDDADSVP PPQQASTFNSRESLQEPRTDKREYRRIVLGNSLQVLLISDPDTDKSAACMYVSIGHLS DPDGCEGLAHLLMRVLLLAYASEKYPGKDSYCQYIVEHGGYTEGILYPNQTDYHFNIN NDCFEEALERFSQIFIKPLMSTEAAMREIKTVESASKPSQLGKSSLS" mobile_element 27574416..27574956 /note="source:CACAO_M_S_E66385_F19_scaffold_5 1 541" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27576395..27577526 /note="source:INTACT146F_F14_scaffold_2-int 1 1148" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27577527..27577585 /note="source:scaffold_9_CACTA_0943 7413 7472" /mobile_element_type="transposon:TIR/CACTA" mobile_element 27577586..27577610 /note="source:INTACT146F_F14_scaffold_2-int 1149 1175" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 27579083..27581059 /locus_tag="TCM_024659" /note="dbxref CacaoGD:Thecc1EG024659" mRNA join(27579083..27579154,27579915..27580170, 27580267..27581059) /locus_tag="TCM_024659" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.28 coverage" CDS join(27580138..27580170,27580267..27580443) /locus_tag="TCM_024659" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09251.1" /translation="MTVSTPPTSKKEGIFGQGWIMNMSSRLETKSEVIVWMANKVLSV GSSSRGKMDSRLSSLRFSFVFHSIS" gene complement(27580954..27581918) /locus_tag="TCM_024660" /note="dbxref CacaoGD:Thecc1EG024660" mRNA complement(27580954..27581918) /locus_tag="TCM_024660" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS complement(27581232..27581564) /locus_tag="TCM_024660" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09252.1" /translation="MIKQENSLVFFLKEYTQAIQDEPTSPSSYSTSFKTLEAMTSSDG ESHPYLEDPLPEPERSQFMASSKVKVEEMDEDDTEPNNALRQATPTISKLTFTVDDIP PTKWAEQF" mobile_element complement(27582821..27584086) /note="source:scaffold_5_CACTA_0614 1443 2652" /mobile_element_type="transposon:TIR/CACTA" mobile_element 27586909..27587087 /note="source:scaffold_5_CACTA_0614 2464 2643" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(27589016..27589387) /note="source:CACAO_Again_on_E60_scaffold_2 1 350" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(27589437..27589479) /note="source:CACAO_Mutator_E1149_scaffold_5 6665 6979" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(27589480..27589775) /note="source:CACAO_M_E44210_F112_scaffold_5 12624 12918" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 27596166..27596444 /note="source:scaffold_5_CACTA_0614 6133 6409" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(27596224..27596455) /note="source:CACAO_M_E44210_F112_scaffold_5 9996 10226" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(27597814..27598477) /note="source:CACAO_M_E58877_F5_scaffold_9 20345 20738" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27598447..27598936 /note="source:CACAO_M_E44210_F112_scaffold_5 10461 10978" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(27598945..27612522) /note="source:INTACT700_F304_scaffold_7-int 3432 16312" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27612696..27613578 /note="source:CACAO_M_E44210_F112_scaffold_5 10459 11369" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(27615037..27618100) /locus_tag="TCM_024664" /note="dbxref CacaoGD:Thecc1EG024664" mRNA complement(join(27615037..27615377,27615728..27615896, 27616101..27616858,27617081..27618100)) /locus_tag="TCM_024664" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s43460.1.5" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024673t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s43510.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1454t2_C1" CDS complement(join(27615279..27615377,27615728..27615896, 27616101..27616858,27617081..27617602)) /locus_tag="TCM_024664" /note="paralog of Thecc1EG024673t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09253.1" /db_xref="Phytozome:POPTR_0001s43510.1" /translation="MLIDCKSLRYVFPPMLAQHLSNLSFLCAKGCEALEQIIYEGQSS TSTSNVPLQPTSFPNLRKIWIIGCNSLKTLFPITVAHCLLKLEQFKVEGASKLEQLFG HEDETGLKDEKEMLLPQLKRLFLKRLPSLTRFIPKCYHFVFPTLEYLEVKECSKITTS FLVDSEFSTHAQTKFFLFNIRNKNQQCATIVPDLGQKSPNLEYLTVWNHERTCQARGG HTHSSLRVLRLETLPESCIIWKDPLQHVTLGNLIKLKAIGCRSLRHGFSPTIAQNLLH LKYLKIWECEALEQIITENQISSSKVHLQVRFPNLIRLQIGKCKNLKRLFPASFVGYL SKLRYLILQEAFELEHLFGHEDEASTKDGEEKKMVLPQLEVLFLGNFPSVLSPTPEGY HFIFQSLRSLTIEECPKMVQLLQLIQIFVFTPKQRHSHLLRKIRRKVLPQSTESKMQQ TAIPAKTFIGIVGVNRMYYLRTWKNQEKISHNKWLGSRVQNAEIINSSPVLFLIKCGL LFCNCPV" mobile_element 27621379..27621542 /note="source:INTACT554_F250_scaffold_7-int 1656 1830" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27621925..27626833 /note="source:CACAO_M_E22900_F87_scaffold_3 2358 7326" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27636335..27637522 /note="source:scaffold_5_CACTA_0614 1444 2646" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(27640881..27641212) /note="source:CACAO_M_E1542_F20_scaffold_1 7554 7887" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27642622..27643343) /note="source:INTACT473_F7_scaffold_3-int 8065 8804" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27643205..27645585 /note="source:CACAO_M_S_E16721_F36_scaffold_2 18197 20591" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(27646314..27646415) /note="source:scaffold_6_CACTA_0702 642 747" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(27646518..27646668) /note="source:scaffold_6_CACTA_0702 90 238" /mobile_element_type="transposon:TIR/CACTA" mobile_element 27647770..27647827 /note="source:CACAO_M_S_E89272_F5_scaffold_8 10929 10984" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(27650161..27717723) /locus_tag="TCM_024665" /note="dbxref CacaoGD:Thecc1EG024665" mRNA complement(join(27650161..27650826,27651025..27651147, 27652338..27652424,27652623..27652674,27652971..27653095, 27655513..27655721,27660574..27660775,27663491..27663595, 27664122..27664183,27664289..27664478,27664565..27664660, 27664976..27665078,27676004..27676107,27676265..27676351, 27677568..27677653,27677936..27678028,27691156..27691318, 27691586..27691698,27703470..27703592,27706290..27706341, 27708499..27708542,27715750..27715823,27715972..27716063, 27716196..27716263,27716942..27717017,27717119..27717723)) /locus_tag="TCM_024665" /product="Insulinase (Peptidase family M16) family protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400047372.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024646t1" /inference="similar to AA sequence:ricco:29010.m000218" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc366t17" mobile_element complement(27650327..27650388) /note="source:CACAO_M_E52694_F25_scaffold_8 4030 4092" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 27650344..27650392 /note="source:CACAO_Again_on_E207_scaffold_9 1026 1074" /mobile_element_type="transposon:TIR/hAT" CDS complement(join(27650575..27650826,27651025..27651147, 27652338..27652424,27652623..27652674,27652971..27653095, 27655513..27655721,27660574..27660775,27663491..27663595, 27664122..27664183,27664289..27664478,27664565..27664660, 27664976..27665078,27676004..27676107,27676265..27676351, 27677568..27677653,27677936..27678028,27691156..27691318, 27691586..27691698,27703470..27703592,27706290..27706341, 27708499..27708542,27715750..27715823,27715972..27716063, 27716196..27716263,27716942..27717017,27717119..27717244)) /locus_tag="TCM_024665" /note="dbxref ricco:29010.m000218; paralog of Thecc1EG024646t1" /codon_start=1 /product="Insulinase (Peptidase family M16) family protein" /protein_id="EOY09254.1" /db_xref="TAIR:AT2G41790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9U3" /translation="MAHVTEIDEEIVKPRTDKREYRRIVLGNSLQVLLICDPDTDKSA ACMYVSIGHLSDPDGCEGLAHLLMRMLPYSSEKYPWEDSFSEYISEHGGYTNSVLYAE WTSYFFDISNDCFEEALERFSQFFIKPLMSAEAATREITTIESAYQNDLLSDGQRMYQ LQKHLNRESHPFHRCGAGNWYTLNVKPKAKGLDIRHELLKFYEANYSANLMHLVVYTK ESLDKVQSLVENKFQDIRNSNLFGFQSTGLPFTSEHRSVLVKAVPIKERHKLTVAWPT TPSWHHYKEGPCDYLGLVIGHKGEGSVYYILQKLGWATKLIAGEGKWTLEFSFFGVTI DLTDAGHEHMQDIVGLLFKYIQLLNETSVCKRIFEELSVVRETTFHYQDKIQPIDYVV RIASNMKKYPPKDWLVGSSLPSNFDPDLVQMFLREFSPENVRIFWESKKFKGDTEKVE PWYGTAYSVEKITTLMIQKWMSSAPSDNLQLPAPNKFIPTNLSLKVAQEKVKFPVLLR KSSYSKLWYKQDTMFSVPKAFVKIEFNCPHVRKSPRAEVLGNIFVQLLRDYLNEHAYY AEIAGLDYSISRTDRGFEVTVFGYNDKLNTLLETVVDKIANFEAKPDKFSITKEMTTK GINNFKYENPFQLAKEYHSLILRDIRWPWKEKLDVLPRLEVEDLVKFTPIMFSRVLLE CFVAGNMERDEAISIIQHVESIFFGGSNPKCQPLFPSLHLTNEVVKFGRGVSYLYSIQ GLNPSNENSALLHYIQVHRDDFILNVKLQLFCLIAKEPAYHQLSSIEQLGYINDFYRS IDFGIHGVVFLIQSTVKNPRDIDSRVEAFLEMFENKINEMTNDEFTRNVNALIDIKLE KHKNLREESEFYWREIINGTLKFDRREAEVEALRQVTQQEFIDFFNEYIKVGSHRKKT LSVRVYGKKHLSEYRSEKSEPLQLHSLRIDDILSFRRSQPHYGSFKGSFSNMKL" mobile_element complement(27653813..27654785) /note="source:CACAO_MITE_S250_scaffold_10 2 946" /mobile_element_type="transposon:TIR/MITE" mobile_element 27656597..27657160 /note="source:scaffold_4_CACTA_0482 16950 17506" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(27661404..27662288) /note="source:CACAO_MITE_S250_scaffold_10 27 892" /mobile_element_type="transposon:TIR/MITE" mobile_element 27665256..27665724 /note="source:scaffold_5_CACTA_0610 6059 6536" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(27665873..27665975) /note="source:CACAO_M_S_E16386_F9_scaffold_2 2044 2143" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27665976..27666037 /note="source:scaffold_6_CACTA_0710 15937 16003" /mobile_element_type="transposon:TIR/CACTA" mobile_element 27666347..27669990 /note="source:scaffold_6_CACTA_0710 138 3814" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(27670019..27670097) /note="source:CACAO_M_E57346_F74_scaffold_9 5056 5139" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27671991..27672048 /note="source:INTACT89_F140_scaffold_9-int 15761 15808" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27673439..27674000 /note="source:scaffold_5_CACTA_0610 6090 6674" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(27678161..27678310) /note="source:scaffold_9_CACTA_0946 1604 1745" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(27678378..27679958) /note="source:scaffold_9_CACTA_0946 1 1591" /mobile_element_type="transposon:TIR/CACTA" mobile_element 27680974..27681062 /note="source:INTACT641_F282_scaffold_1-int 2586 2674" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(27682917..27683050) /note="source:scaffold_9_CACTA_0946 1618 1745" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(27684797..27689838) /note="source:INTACT1407F_F388_scaffold_9-int 5 5045" /mobile_element_type="retrotransposon:LTR/Copia" gene 27688281..27712958 /locus_tag="TCM_024668" /note="dbxref CacaoGD:Thecc1EG024668" mRNA join(27688281..27688481,27708810..27708924, 27710093..27710529,27711039..27711555,27711708..27711811, 27711905..27711968,27712152..27712958) /locus_tag="TCM_024668" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01030064001.3" /note="quality class is medium, express is medium, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.34 coverage" mobile_element 27696892..27697002 /note="source:CACAO_M_E48538_F49_scaffold_6 12213 12327" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27699760..27701363) /note="source:CACAO_M_E3884_F22_scaffold_1 13583 15081" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27701744..27701908 /note="source:CACAO_M_E48538_F49_scaffold_6 12163 12325" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(27708835..27708924,27710093..27710529, 27711039..27711555,27711708..27711811,27711905..27711968, 27712152..27712244) /locus_tag="TCM_024668" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09255.1" /translation="MDNFNLHKVLLGSIDAGAKCHIIIGLPTKKLWGRSDVNWLSAES VGNSEGLFFVWCTKYFSIKHPATNRRFILIMGKIQGLNGNYEIGNIYAPNDEGERSAF WEELLLALRAWDVTWCIEGDFNAIKCIEERTSCTSIDKSMPDFSNFIEESGLMDIPMI KGLLHLVQLSGQCNLYFTFARCKANFIGKTIFQGREIENPNNIREPIANHYENFYGFK VVWKLKELYCGLYKLTEHSIASLEVSFSEFKIWEAINSCEDNKAPGPDEINFCFLKKQ WNTIKEEMMKFVVDFQRTNVMNKRVNATFIMLILKCDSPSTPNDYRPISLVKCLYKII SKALTLQLWKVIDEGFLDKVMRLMGFENKWCTWINGCISTAMVSILVNSAFMYGVVNN QLIKGVAIGTAWADMINCKVGKIPSTYLGLFFGAISSSVSVW" gene 27713404..27714408 /locus_tag="TCM_024669" /note="dbxref CacaoGD:Thecc1EG024669" mRNA join(27713404..27713618,27713711..27713851, 27713978..27714408) /locus_tag="TCM_024669" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002090t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.38 coverage" CDS join(27713425..27713618,27713711..27713851, 27713978..27714143) /locus_tag="TCM_024669" /note="paralog of Thecc1EG002090t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09256.1" /translation="MVAINWDFWTTKNDIVFNGKIWKREQIFELFHLKVALWMNAKWP GHNASISDLARFPNEGIAPIMDSGTNGILRNEHGDVLALFSKAIDIRDSSKVELHAVK EVAFIFATLSEIGGWEIKHISRSANEEADSLAKECVSRPTDLLWINDSMIAQGATPAS EMIDTV" gene complement(27721714..27723605) /locus_tag="TCM_024671" /note="dbxref CacaoGD:Thecc1EG024671" mRNA complement(join(27721714..27722383,27722487..27722757, 27723204..27723605)) /locus_tag="TCM_024671" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.67 coverage" CDS complement(join(27721944..27722383,27722487..27722757, 27723204..27723575)) /locus_tag="TCM_024671" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09257.1" /translation="METDSIGDPSSDFDEGVMAAHTRVNVNRFRSRVEKDPANNHNEE KIEIDFHIKRNRLGLSYCHILMHGDIKMQSEDAESNEDGDMSEDYDSEDDVMANKANG PYIRLTKEDKRRIRQPWKNTLIIVEYEGLRMVYFQCGKFGHNDESCQVKQKEQKGYTE EEATNITQQNVIRENDYDSARYRPWMVAKRYTRRNIVNRIEGKTEVQTKQKSKKGVQV QAYGFVRKEKVATQDNKKFKVSLQKTNKISNEDARQTRNIKRRHVDNPIKIATSESTQ YKKQTIVSRLSSKDASNERQRTEPSKGCANNIVALNEQEALPNYPMSNGGHLNMLGVG FNGDARENKKIESDLCLEIPILRQRI" mobile_element 27724669..27727619 /note="source:CACAO_M_E43985_F44_scaffold_5 1 2951" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27727850..27728378 /note="source:INTACT524_F2_scaffold_3-int 1 528" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27728374..27728969 /note="source:INTACT524_F2_scaffold_3-int 4593 5185" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27728963..27729461 /note="source:scaffold_9_CACTA_0937 5817 6234" /mobile_element_type="transposon:TIR/CACTA" mobile_element 27729461..27730789 /note="source:scaffold_9_CACTA_0937 9661 10957" /mobile_element_type="transposon:TIR/CACTA" mobile_element 27731469..27736497 /note="source:INTACT188_F36_scaffold_5-int 1 5029" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(27735541..27744798) /locus_tag="TCM_024673" /note="dbxref CacaoGD:Thecc1EG024673" mRNA complement(join(27735541..27735914,27736472..27736909, 27737317..27737526,27737721..27738482,27738699..27739463, 27739850..27740115,27740203..27741167,27741693..27743662, 27743762..27744026,27744786..27744798)) /locus_tag="TCM_024673" /product="Cc-nbs-lrr resistance protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029290001" /inference="similar to AA sequence:Phytozome:POPTR_0134s00210.1" /note="quality class is strong, express is strong, homology is paralog weak, intron is medium, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1454t10" CDS complement(join(27737347..27737526,27737721..27738482, 27738699..27739463,27739850..27740115,27740203..27741167, 27741693..27743638)) /locus_tag="TCM_024673" /codon_start=1 /product="Cc-nbs-lrr resistance protein, putative" /protein_id="EOY09258.1" /db_xref="Phytozome:POPTR_0134s00210.1" /db_xref="TAIR:AT4G27220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N945" /translation="MATELVTSVATGVAENLVEQYVVNPALSNLRHVFCFRSVVEEFK EQKQKFSSAQSRLQNDVNEAKRKILDIEQDVTDWLQEADKVQKEVEILENEIQENKTC LTWCPNWSCRYRLSKKIAEKTLRMAKLVETTSKFDPSRIGHRATLPNIEFLSSKDFMP SKSSKSVLNQIWEVLKNDTENVIGVHGMGGVGKTTLVKQVGKKAEEVKLFDKVVMTTV SQNPNIDKIQDEIADRLDLEFDKKSEHGKAQQLWRGLKHVERILIIVDDLWEYIDLTG IGIPVGEHHTGCKILLTTRLRQVCSYMNCQRMIDLEVLEEDEAWELFQKNAGLTKDSE GTCLHDVAREIARECRGLPLAIVTIGRALKDKTPSAWTVANNRLKECRHSDNPDFYED IYRRLKISYDCLKGEKIQSCFLLCSLFPEDYDISIEDLTRFGVGQGLFHDASSIDDAR TEMRAKLEDLKSSGLLLDSGKPQCVKMHDVVRDFAHWIMSKGEKVFMVKAGRRLKEWP RSESFECFTAISLMNNKIERLPDGLECPKLETLLLSGDGSTKVSSAFFEGMKALKVLT LESVLLSLEGLQVLTNLRTLRLEKCKLENVSSLAELKKLEILDLRGSHIYELPIELRE LTALRLLDLSTCAMLQRIPLNLLPRLVSLEELYIDYPSFEQWTTEEKSAEGSNASLSE LYQLPHLSALTLCIRSKFLSKYFVFPNLERYAIVVNKWQHDHYPTSKTLKIKESSLNA FNKLLLNVEDLSLDSITGYKNLVPVLDRRGLQKLTFLELQDCKDIQCLIDTTQHQVPT PAFSNLVKLTMSNMVSLKQLCNGPPPKQFLQNLEELTIRNCMDMISAVPGVQNLRGVT IKDCGQLQVVFEMDKLLHSNQENEPPLLSNLIYLELELLPELWCIWKGPTHRVGLRSL KVVRVQHCDRLTSLFSPSLAQSLSELEELEILHCPELKQIFAQFEDDEEISPNSFLRL QQLKSLCIIDSSQLQQIFSTAMEKNEKDIVLSQLKSLVLQNLMHLKSFCPENCFITLP SLEKLKVYRCPQLTHFTGQLPATMLAQLKELRLFKVGNDSQLYNRVGPQMRQRSSNSE YLTIGNCQEIFQLQGGYLLLNLKALHLEDLSELQVIWKGPTELASLQNLTILMLIDCK SLRYVFPPMPAQHLSNLSFLSVKGCEALEQIIYEGQSSTSTSNVLLQPTGFPNLRKIW IIGCNSLKTLFPITVAHCLLKLEEFKVEGACKVERVFGHEDETDLKDEKEMVLPQLKR LFLKRLPSLTRFIPECYHFVFPTLEYLEVKECSKITTSFLVDSEFLMHAQTKEICLFN IRDKNQQCATIVPELGQKSPNLEYLTVWNHKRTCQAQGGHTHSSLRVLRLETLPELCI IWKDPLQHVTLGNLIKLKVIGCRSLRHVFSPTIAQNLLHLKYLKIWECEALEQIISED QISSSQVHLQVRFPNLIRLQIGKCKNLKRLFPASFVSYLSKLRYLIIQEAFELEHLFG HEDEASTKDGKEKKMVLPQLEVLFLGNLPSILSSTPEGYHFIFQSLRSLTIEECPKMA STFTVDSNLFVHAKTELVLKAFQLVEKDTKKSTTTIQGIEDATNRHSSKDIYWYRWYQ PNVLPPYMEEPGENFSQ" mobile_element complement(27745378..27751102) /note="source:CACAO_M_S_E32470_F28_scaffold_3 1 5703" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27755654..27758848 /note="source:CACAO_M_E84232_F328_scaffold_10 1 3173" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27761856..27762832 /note="source:scaffold_8_CACTA_0867 428 1745" /mobile_element_type="transposon:TIR/CACTA" gene 27763508..27765713 /locus_tag="TCM_024676" /note="dbxref CacaoGD:Thecc1EG024676" mRNA join(27763508..27763718,27764110..27764358, 27764629..27764931,27765417..27765713) /locus_tag="TCM_024676" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(27764155..27764358,27764629..27764931, 27765417..27765566) /locus_tag="TCM_024676" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09259.1" /translation="MEHKENRVVRRGVKRSHTTDEEVDTHLTIKAHSVAEAHAASVAV VDDQVRNPPLHPQMHTSFKRKMKRSRSMGEQDGASTEEGIGNGVYLDEPIGINDPIAS VQSSPPIALYNVPFKSLTITEATYLAKGPTTPAPHPHRIPTSPKAAQHAQSTPSLEAS PPSPVEDAQIILLGLNRELRPLPTDKIFKQRNVVLPKHLIEYVKGVSPSRGLPWHEVD " mobile_element 27766108..27766172 /note="source:CACAO_M_S_E89272_F5_scaffold_8 10936 11000" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27766120..27772384) /note="source:INTACT528_F17_scaffold_6-int 33 7885" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(27773540..27775463) /locus_tag="TCM_024677" /note="dbxref CacaoGD:Thecc1EG024677" mRNA complement(join(27773540..27774355,27775208..27775463)) /locus_tag="TCM_024677" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003488t1" /note="quality class is medium-utrpoor, express is medium, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.35 coverage" CDS complement(27773629..27773880) /locus_tag="TCM_024677" /note="paralog of Thecc1EG003488t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09260.1" /translation="MRADGMTNDEVENMIKETEPRATRVASVVRRRIDKVGSEVMIIN NISKIINKGVNLEDLINKCTGDNHVLTYDVSDKPIVIEY" gene 27773908..27775150 /locus_tag="TCM_024678" /note="dbxref CacaoGD:Thecc1EG024678" mRNA 27773908..27775150 /locus_tag="TCM_024678" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038859t1" /note="quality class is weak-utrpoor, express is weak, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.30 coverage" CDS 27774418..27774714 /locus_tag="TCM_024678" /note="paralog of Thecc1EG038859t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09261.1" /translation="MTCFTPSKRASKTFFYGILVSEITDFSSANTRCDPPKSHALFNP IDEHTVKKLGFELKNGKWVRKGVIDLRVHDDEAVEGDEDNEVESNAYSTSLSTS" mobile_element 27775296..27775528 /note="source:CACAO_Mutator_E592_scaffold_3 12800 13026" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(27775557..27775616) /note="source:CACAO_PIF_E119_scaffold_3 13683 13749" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(27775680..27775768) /note="source:CACAO_Mutator_E1320_scaffold_6 7874 7947" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(27777503..27778845) /note="source:CACAO_M_E58121_F9_scaffold_9 124 1432" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27778846..27784088 /note="source:INTACT316_F9_scaffold_4-int 2182 10436" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(27784513..27787554) /locus_tag="TCM_024680" /note="dbxref CacaoGD:Thecc1EG024680" mRNA complement(join(27784513..27784748,27785123..27785179, 27787246..27787554)) /locus_tag="TCM_024680" /product="Uncharacterized protein" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete" CDS complement(join(27784653..27784748,27785123..27785179, 27787246..27787419)) /locus_tag="TCM_024680" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09262.1" /translation="MPSIRRLLRMMIVMPLVENTLGDAIRWDIVSDEDCDVVYGEITL DNDFDIPSVALALGTSFNEPRLLILIDLRAGHQVDLFFYKQPEEAKQQEEEKAIAPDY AFLAPE" mobile_element 27787485..27787579 /note="source:scaffold_8_CACTA_0867 18613 18707" /mobile_element_type="transposon:TIR/CACTA" gene complement(27792694..27796011) /locus_tag="TCM_024682" /note="dbxref CacaoGD:Thecc1EG024682" mRNA complement(join(27792694..27793048,27793772..27794141, 27794256..27794571,27795025..27795056,27795123..27795165, 27795818..27796011)) /locus_tag="TCM_024682" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032881t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(27793861..27794141,27794256..27794571, 27795025..27795056,27795123..27795165,27795818..27795973)) /locus_tag="TCM_024682" /note="paralog of Thecc1EG032881t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09263.1" /translation="MASFKCCKTETGKGDASEKEDISEYVATYMGELIDVTKNMEKDL RVLINKVLPAKCEAYDYIRWSLGLMKLVENVVRMDDDCEEDDIIDWNNEMDNDCEDDY VGIHDDCLKDDKGEDNDIPDCNHADVSIEHATTIVLEDVQCDDHNTTIILKDVECDSL VYGNPIVGDNGICSLNDNESREVFPSKVELKQALSLLALKWHFKIRVNKSCHARFEVV CKDKACKFAMCGTKLLEGDYCQVCMFHKVHMCTVDGLQGGYRIASTRLIGELMSPKL" mobile_element complement(27796173..27796235) /note="source:CACAO_Mutator_E1744_scaffold_8 1282 1342" /mobile_element_type="transposon:TIR/Mutator" mobile_element 27796997..27797293 /note="source:scaffold_8_CACTA_0867 422 728" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(27797499..27797522) /note="source:CACAO_Mutator_E1320_scaffold_6 7866 8062" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(27797523..27797696) /note="source:CACAO_PIF_E119_scaffold_3 13640 13817" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 27797916..27800142 /locus_tag="TCM_024683" /note="dbxref CacaoGD:Thecc1EG024683" mRNA join(27797916..27798495,27799053..27799338, 27799476..27800142) /locus_tag="TCM_024683" /product="High-affinity K+ transporter 1, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01010919001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039581t1" /inference="similar to AA sequence:Phytozome:GSVIVT01010919001" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" mobile_element complement(27798408..27798601) /note="source:CACAO_Mutator_E1744_scaffold_8 1 204" /mobile_element_type="transposon:TIR/Mutator" CDS join(27799067..27799338,27799476..27800040) /locus_tag="TCM_024683" /note="paralog of Thecc1EG039581t1" /codon_start=1 /product="High-affinity K+ transporter 1, putative" /protein_id="EOY09264.1" /db_xref="Phytozome:GSVIVT01010919001" /db_xref="TAIR:AT4G10310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AN75" /translation="MSTVEMEIFSNPQLIVMTIVMFVGGEVFTSVAGHFMSNSKPKQR RAGENVASLRSDSSFNPKNIVISGIESRVIMNPKPGNRQAEEQTQPSAKDILKRKGLN LFTFSLFTTVSTFSNCGFVPTNENMLVFAKNSGLLLILIPQVLQGNSLFPACLRFSIW VLGKVVRKVEYSNYLLKNTRAIGYHHLLPNRRSCYLVFTVFGFTAAQLIFFCAMEWNS EALIGLDPYEKIIGLFFQSVNTRHTGETIVDLSTISAAILVILIVMMSVSLSLSLSFH MA" mobile_element 27804648..27807573 /note="source:INTACT118_F5_scaffold_9-int 9413 12393" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 27810896..27813570 /locus_tag="TCM_024685" /note="dbxref CacaoGD:Thecc1EG024685" mRNA join(27810896..27811078,27811942..27812169, 27813337..27813570) /locus_tag="TCM_024685" /product="High-affinity K+ transporter 1, putative" /inference="alignment:exonerate-protein:2:frave:gene12247" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039581t1" /inference="similar to AA sequence:ricco:29333.m001092" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS join(27811068..27811078,27811942..27812169, 27813337..27813532) /locus_tag="TCM_024685" /note="dbxref ricco:29333.m001092; paralog of Thecc1EG039581t1" /codon_start=1 /product="High-affinity K+ transporter 1, putative" /protein_id="EOY09265.1" /db_xref="TAIR:AT4G10310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SDN6" /translation="MHDTHLPPYTSFLFVNDDTEQYQQKFESRKRRGNFAENLTLSQL AYLAIFVNLICITERKSMKEDPLNFSGLNIMLEVVSAYGNVGLTTGCSCKRQLKPDAN CRDKWYGFVGRRSDEGKIILIAVMFFGRLKKFNMDGGKACRF" mobile_element 27812656..27812723 /note="source:scaffold_1_CACTA_0011 7461 7528" /mobile_element_type="transposon:TIR/CACTA" mobile_element 27812663..27812751 /note="source:CACAO_M_S_E52027_F3_scaffold_5 3872 3954" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(27813550..27820863) /locus_tag="TCM_024686" /note="dbxref CacaoGD:Thecc1EG024686" mRNA complement(join(27813550..27814017,27814266..27814363, 27814469..27814594,27814711..27814794,27814875..27814991, 27815120..27815203,27815345..27815392,27815582..27815636, 27817403..27817458,27817531..27817615,27817721..27817794, 27818920..27818986,27820159..27820253,27820703..27820863)) /locus_tag="TCM_024686" /product="Sterol methyltransferase 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma12g01170.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046707t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033285001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1193t10; alternateUTRof:Thecc1EG024686t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6078t5" mRNA complement(join(27813550..27814017,27814266..27814405, 27814516..27814594,27814711..27814794,27814875..27814991, 27815120..27815203,27815345..27815392,27815582..27815636, 27817403..27817458,27817531..27817615,27817721..27817794, 27818920..27818986,27820159..27820245,27820703..27820858)) /locus_tag="TCM_024686" /product="S-adenosyl-l-methionine:delta24-sterol-C- methyltransferase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma12g01170.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046707t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033285001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:PASA:2:TSA:puevd3b023875t1a3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6078t5" mRNA complement(join(27813550..27814017,27814266..27814363, 27814469..27814594,27814711..27814794,27814875..27814991, 27815120..27815203,27815345..27815392,27815582..27815636, 27817403..27817458,27817531..27817615,27817721..27817794, 27818920..27818986,27820159..27820245,27820703..27820858)) /locus_tag="TCM_024686" /product="Sterol methyltransferase 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma12g01170.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046707t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033285001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6078t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6078t5" CDS complement(join(27813963..27814017,27814266..27814363, 27814469..27814594,27814711..27814794,27814875..27814991, 27815120..27815203,27815345..27815392,27815582..27815636, 27817403..27817458,27817531..27817615,27817721..27817794, 27818920..27818986,27820159..27820241)) /locus_tag="TCM_024686" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG046707t1" /codon_start=1 /product="Sterol methyltransferase 1 isoform 1" /protein_id="EOY09266.1" /db_xref="Phytozome:GSVIVT01033285001" /db_xref="TAIR:AT5G13710.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LM02" /translation="MSKSGALDLVSGVGGSIERKEVFSAVQKYEKYHVCHGGDDEERK ANYTDMVNKYYDLVTSFYEYGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKKGQ KVLDVGCGIGGPLREIARFSDTLLTGLNNNEYQISRGEELNRIRGVDNSCTYVKADFM RMPFSDSTFDAIFAIEATCHAPDLLNCYKEIYRVLKPGQCFAAYEWCVTDSFDPMNQE HQRIKGEVELGNGLPDIRSMGQCLEALKLAGFEVICEKDVAVDSPLPWHLPLDKDYFS PSNFRVTAFGRFVTRNMVKILEFLGLAPEGSQRVQHFLEKAADALVEGGRKGIFTPMY FFLARKPIP" CDS complement(join(27813963..27814017,27814266..27814363, 27814469..27814594,27814711..27814794,27814875..27814991, 27815120..27815203,27815345..27815392,27815582..27815636, 27817403..27817458,27817531..27817615,27817721..27817794, 27818920..27818986,27820159..27820241)) /locus_tag="TCM_024686" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG046707t1" /codon_start=1 /product="Sterol methyltransferase 1 isoform 1" /protein_id="EOY09267.1" /db_xref="Phytozome:GSVIVT01033285001" /db_xref="TAIR:AT5G13710.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LM02" /translation="MSKSGALDLVSGVGGSIERKEVFSAVQKYEKYHVCHGGDDEERK ANYTDMVNKYYDLVTSFYEYGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKKGQ KVLDVGCGIGGPLREIARFSDTLLTGLNNNEYQISRGEELNRIRGVDNSCTYVKADFM RMPFSDSTFDAIFAIEATCHAPDLLNCYKEIYRVLKPGQCFAAYEWCVTDSFDPMNQE HQRIKGEVELGNGLPDIRSMGQCLEALKLAGFEVICEKDVAVDSPLPWHLPLDKDYFS PSNFRVTAFGRFVTRNMVKILEFLGLAPEGSQRVQHFLEKAADALVEGGRKGIFTPMY FFLARKPIP" CDS complement(join(27814323..27814405,27814516..27814594, 27814711..27814794,27814875..27814991,27815120..27815203, 27815345..27815392,27815582..27815636,27817403..27817458, 27817531..27817615,27817721..27817794,27818920..27818986, 27820159..27820241)) /locus_tag="TCM_024686" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG046707t1" /codon_start=1 /product="S-adenosyl-l-methionine:delta24-sterol-C- methyltransferase isoform 3" /protein_id="EOY09268.1" /db_xref="Phytozome:GSVIVT01033285001" /db_xref="TAIR:AT5G13710.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LM02" /translation="MSKSGALDLVSGVGGSIERKEVFSAVQKYEKYHVCHGGDDEERK ANYTDMVNKYYDLVTSFYEYGWGESFHFAPRWKGESLRESIKRHEHFLALQLGLKKGQ KVLDVGCGIGGPLREIARFSDTLLTGLNNNEYQISRGEELNRIRGVDNSCTYVKADFM RMPFSDSTFDAIFAIEATCHAPDLLNCYKEIYRVLKPGQCFAAYEWCVTDSFDPMNQE HQRIKGEVELGNGLPDIRSMGQCLEALKLAGFEVICEKDVAVDSPLPWHLPLDKDYFS PIKAKISERFFFLSAGQNIGVFGTCSRR" mobile_element 27820978..27822163 /note="source:CACAO_PIF_E144_scaffold_10 1201 2392" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(27823938..27826012) /locus_tag="TCM_024688" /note="dbxref CacaoGD:Thecc1EG024688" mRNA complement(join(27823938..27824804,27825288..27825785, 27825881..27826012)) /locus_tag="TCM_024688" /product="F17A17.37 protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033286001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005853t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s04880.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc479t1" CDS complement(join(27824284..27824804,27825288..27825785, 27825881..27825968)) /locus_tag="TCM_024688" /note="paralog of Thecc1EG005853t1" /codon_start=1 /product="F17A17.37 protein" /protein_id="EOY09269.1" /db_xref="Phytozome:POPTR_0006s04880.1" /db_xref="TAIR:AT2G41810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SFB1" /translation="MAWLLSLCFTLIFSLCNGSRTPVTSPYLDGYLDNGNFEIAPKKE NLNKTVILGKYSLPGWEIDGLVEFVSGGPQPGGFYLAIPRGAHAVRLGNEGSISQNVN VKPGYIYSLTFGATRTCAQDEVLRISVSRQTADISIQTLYSTDGGDTIAFAFQATAKV VRVTFHNPGLQEDPTCGPLLDAIAIKEMRPLRYTKGNLVKNGGFETGPHTFNNFSTGV LLPPKMQDKISPLPGWIIESLKPVKYIDKKHFSVPSGLYAIELVAGRESAMAQVIRTV PNKFYTLAFTVGDAKNGCHGSMMVEAFAGKETLKVPFVSQGKGVFKTASFKFQAISAR TRITFYSAYYHTKLHDFGHMCGPVLDDVRVLPVS" gene 27830168..27832078 /locus_tag="TCM_024689" /note="dbxref CacaoGD:Thecc1EG024689" mRNA join(27830168..27830628,27830844..27831133, 27831429..27831735,27831839..27832078) /locus_tag="TCM_024689" /product="NAC domain, IPR003441-like protein" /inference="alignment:exonerate-protein:2:frave:gene00951" /inference="similar to AA sequence:frave:gene10901" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.19 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6003t1" CDS join(27830367..27830628,27830844..27831133, 27831429..27831735,27831839..27831969) /locus_tag="TCM_024689" /note="dbxref frave:gene10901" /codon_start=1 /product="NAC domain, IPR003441-like protein" /protein_id="EOY09270.1" /db_xref="TAIR:AT3G04070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HNX8" /translation="MEQFHEQNSMQISAAAKGIDVDPTCSRSDETDLLEEYFNSFPFG YRFCPSDEELIEHYLKKKVNNETLPLNRISEINLYSKDPSELAAEFKPLTETEWYFFT PRQKKYPNGSRPNRATPEGYWKPTGTDKAIPPGSGHPIGYKKTLDFYEGKHPGGRKTD WKMHEYKVKDNTSQNNGRAKNDMKLDDWVLCKLYNKKEKNGEDAGNSVTQATVIISQN EASVMPERNNEFEDIASQPNPNYGSLQHEDESSYGMYLMLSEPTAPILDNDISFYSIE DCFPDVFDGQGSMFRDANKILLSSWVIVKIVQVSFILTERYVKRVFLQSKLEI" mobile_element complement(27836267..27837641) /note="source:INTACT556_F252_scaffold_2-int 15994 17434" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27838569..27838947 /note="source:INTACT1391F_F387_scaffold_8-int 14082 14517" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27838656..27839724) /note="source:INTACT345_F202_scaffold_1-int 10820 11941" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27845522..27847613) /note="source:INTACT345_F202_scaffold_1-int 8247 10339" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27847616..27848071) /note="source:CACAO_M_E3969_F127_scaffold_1 1707 2160" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27850410..27850975 /note="source:INTACT60_F127_scaffold_9-int 2465 3026" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27851076..27852594) /note="source:INTACT1232F_F375_scaffold_6-int 7454 8978" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27852695..27855544) /note="source:INTACT1232F_F375_scaffold_6-int 4586 7442" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27855532..27855821 /note="source:scaffold_4_CACTA_0506 3781 4070" /mobile_element_type="transposon:TIR/CACTA" mobile_element 27857728..27858377 /note="source:CACAO_M_E23727_F42_scaffold_4 2463 3112" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27858378..27865440) /note="source:INTACT1330F_F382_scaffold_8-int 1564 8644" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 27858788..27859526 /locus_tag="TCM_024691" /note="dbxref CacaoGD:Thecc1EG024691" mRNA 27858788..27859526 /locus_tag="TCM_024691" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007902t1" /note="quality class is strong-expresste, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00144t00006_G2" CDS 27859148..27859486 /locus_tag="TCM_024691" /note="paralog of Thecc1EG007902t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09271.1" /translation="MQGPIFIGSSMSPTTSLVVPSKALTTMRLVLIYDTSTGNLVKVE RGMTFKAEPLSTKTLGTAWSLHLMVMCSALLLPRPPDGISSSLKAMKFPTVMFPTMWS NFSTDISCAT" mobile_element 27865541..27866232 /note="source:INTACT72F_F343_scaffold_2-int 9620 10358" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27866333..27866525) /note="source:CACAO_on_S_E46_scaffold_2 7394 7605" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(27866526..27872282) /note="source:INTACT345_F202_scaffold_1-int 2486 8249" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27872285..27878704 /note="source:INTACT706_F73_scaffold_9-int 673 7088" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 27879180..27882227 /locus_tag="TCM_024694" /note="dbxref CacaoGD:Thecc1EG024694" mRNA join(27879180..27879552,27880423..27880480, 27880796..27880935,27881065..27881100,27881347..27881579, 27881669..27882227) /locus_tag="TCM_024694" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(27879463..27879552,27880423..27880480, 27880796..27880935,27881065..27881100,27881347..27881579, 27881669..27881801) /locus_tag="TCM_024694" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09272.1" /translation="MAAHPSLRRRRLPFTQAWESKTPITDSGEKGIPPLSKDCVAFPP GDPQLGEGCCAEQTKQYLAMGPPVGMPHFAAHKIEVLVWQLGHGRIAIKDELGSIKWV MPRSFRLRMVENKAKRPIMVWNKPDIGEVKFNVDRAINGCPSDTTIRGLLRNNKGKVL MRFSKSILITDSNLAEFLANREAFFLYIVEILKMGALVGKPQEKADRLAKDGVYREVA LLEFGGESLSL" mobile_element 27879489..27879601 /note="source:CACAO_M_E12044_F76_scaffold_2 6496 6611" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27879585..27879955 /note="source:INTACT1391F_F387_scaffold_8-int 14082 14526" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27880654..27880692 /note="source:CACAO_M_E57097_F245_scaffold_8 3106 3143" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27880657..27880704) /note="source:scaffold_4_CACTA_0494 16173 16218" /mobile_element_type="transposon:TIR/CACTA" mobile_element 27883343..27883924 /note="source:CACAO_M_S_E101631_F270_scaffold_9 8121 8701" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 27883385..27884052 /note="source:CACAO_M_S_E31635_F14_scaffold_3 1698 2363" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27885208..27886091) /note="source:INTACT1223F_F374_scaffold_6-int 1 881" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27886092..27886271 /note="source:INTACT261_F189_scaffold_2-int 241 404" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(27886661..27887051) /note="source:CACAO_on_E565_scaffold_5 13464 13832" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 27887161..27887356 /note="source:CACAO_on_E459_scaffold_2 3368 3570" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(27887661..27887702) /note="source:INTACT1223F_F374_scaffold_6-int 44 85" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 27890775..27892129 /locus_tag="TCM_024695" /note="dbxref CacaoGD:Thecc1EG024695" mRNA join(27890775..27891238,27891388..27891680, 27891764..27892129) /locus_tag="TCM_024695" /product="NAC domain, IPR003441-like protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024689t1" /inference="similar to AA sequence:frave:gene14711" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.54 coverage" CDS join(27891016..27891238,27891388..27891680, 27891764..27891973) /locus_tag="TCM_024695" /note="dbxref frave:gene14711; paralog of Thecc1EG024689t1" /codon_start=1 /product="NAC domain, IPR003441-like protein" /protein_id="EOY09273.1" /db_xref="TAIR:AT1G01720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HNX9" /translation="MEQNYQHNKLTKMQLDDATQNDEYLNSFPPGVRFFPSDEELLQH YLKNKVLNQPIFPNIIQEVNLYQHHPLELTGMYKPLTETEWYFFTCRDRKHSKGCRPN RATPRGFWKQSGVEKPIPLDSEDAIGYKKWLIFYEKENEQVKRTDWKMHEYRIHDTIS SPNKESAGNWLKVDGWVLCRIFKKKEKNNEEETETFNPEVKDHDSIFDDYFSLTAENN FPYQKNNDCFDDLEEFDLKFFCK" mobile_element complement(27896990..27897761) /note="source:scaffold_1_CACTA_0011 12712 13486" /mobile_element_type="transposon:TIR/CACTA" mobile_element 27897762..27898662 /note="source:INTACT622F_F362_scaffold_4-int 10274 12007" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27897905..27899080) /note="source:scaffold_5_CACTA_0584 7148 8352" /mobile_element_type="transposon:TIR/CACTA" gene 27900882..27905427 /locus_tag="TCM_024697" /note="dbxref CacaoGD:Thecc1EG024697" mRNA join(27900882..27901053,27901638..27904263, 27904382..27905427) /locus_tag="TCM_024697" /product="Leucine-rich repeat protein kinase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s05020.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s05020.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1519t4" CDS join(27901923..27904263,27904382..27904707) /locus_tag="TCM_024697" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein isoform 1" /protein_id="EOY09274.1" /db_xref="Phytozome:POPTR_0006s05020.1" /db_xref="TAIR:AT2G41820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22938" /translation="MAFLCFSFLLVGFLSKSFLVDAQLNDQATLLAINKELGGVADWG DNNTDYCNWEGIHCGLNHSFVERLDLSRRMLRGNVTLISNLKSLKQLDLSYNNLNGPI PSALGNLSDLEYLDLSLNKFEGYIPVEFGGLRNLRSLNLSNNLLIGEIPEELQGLEKL QDFQISSNRLSGSIPHWVGRLTNLRVFTAYENQLGGKIPDNLGLVSELKLLNLHSNQL DGSLPNSIFAMGKLEVLVLTQNGLTGDLPESIGNCGGLSSIRIGNNKLVGVIPKTIGN VSSLTYFEADNNNLSGEIASEFAQCTNLTLLNLAYNGFTGIIPSEIGQLMNLQELILS GNSLFGDIPRSILGCKNLNKLDLSNNRFNGTIPNEICNMTRLQYLLLGQNSIKGEIPH EIGNCVKLLELQLGSNYLTGSIPPDIGRIRNLQIALNLSFNHLHGQLPAELGKLDKLV SLDVSSNQLTGNIPPAFKGMLSLIEVNFSNNLLAGPIPTFVPFQKSPNSSFQGNKGLC GDPLSFSCANSIVSDRANYHHRVSYRIILAVLGSGLAVFISVTVVVLLFMMRERQEKA AKSAGIVDEGTSSRPTIIAGNVFVENLRQAVDLDAVIKATLKDSNKINNGTFSTVYKA VMPSGLVLSVKRLKSMDRTIIHHQNKMIRELERLSKLYHDNLVRPIGFVIYEDVALLL HQYLPNGTLAQLLHESSKQSEYQPDWPRRLSIAIGVAEGLAFLHHVAVIHLDISSGNV LLDADFKPLVGEIEISKLLDPSKGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYG VVLLEILTTRLPVDEDFGEGVDLVKWVHGAPARGETPEQILDARLSTVSFGWRREMLA ALKVALLCTDSTPAKRPKMKKVVEMLQEIRQN" mRNA join(27902093..27902151,27902574..27904263, 27904382..27905123) /locus_tag="TCM_024697" /product="Leucine-rich repeat protein kinase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s05020.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s05020.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6074t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1519t4" CDS join(27902607..27904263,27904382..27904707) /locus_tag="TCM_024697" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein isoform 2" /protein_id="EOY09275.1" /db_xref="Phytozome:POPTR_0006s05020.1" /db_xref="TAIR:AT2G41820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22938" /translation="MGKLEVLVLTQNGLTGDLPESIGNCGGLSSIRIGNNKLVGVIPK TIGNVSSLTYFEADNNNLSGEIASEFAQCTNLTLLNLAYNGFTGIIPSEIGQLMNLQE LILSGNSLFGDIPRSILGCKNLNKLDLSNNRFNGTIPNEICNMTRLQYLLLGQNSIKG EIPHEIGNCVKLLELQLGSNYLTGSIPPDIGRIRNLQIALNLSFNHLHGQLPAELGKL DKLVSLDVSSNQLTGNIPPAFKGMLSLIEVNFSNNLLAGPIPTFVPFQKSPNSSFQGN KGLCGDPLSFSCANSIVSDRANYHHRVSYRIILAVLGSGLAVFISVTVVVLLFMMRER QEKAAKSAGIVDEGTSSRPTIIAGNVFVENLRQAVDLDAVIKATLKDSNKINNGTFST VYKAVMPSGLVLSVKRLKSMDRTIIHHQNKMIRELERLSKLYHDNLVRPIGFVIYEDV ALLLHQYLPNGTLAQLLHESSKQSEYQPDWPRRLSIAIGVAEGLAFLHHVAVIHLDIS SGNVLLDADFKPLVGEIEISKLLDPSKGTASISAVAGSFGYIPPEYAYTMQVTAPGNV YSYGVVLLEILTTRLPVDEDFGEGVDLVKWVHGAPARGETPEQILDARLSTVSFGWRR EMLAALKVALLCTDSTPAKRPKMKKVVEMLQEIRQN" gene complement(27906724..27910052) /locus_tag="TCM_024698" /note="dbxref CacaoGD:Thecc1EG024698" mRNA complement(join(27906724..27908696,27910011..27910052)) /locus_tag="TCM_024698" /product="PCF11P-similar protein 4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024703t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s00540.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.41 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc5000t1" CDS complement(27907528..27908682) /locus_tag="TCM_024698" /note="paralog of Thecc1EG024703t1" /codon_start=1 /product="PCF11P-similar protein 4" /protein_id="EOY09276.1" /db_xref="Phytozome:POPTR_0011s00540.1" /db_xref="TAIR:AT4G04885.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HZK7" /translation="MAPEVLPPPGKRPRIVAPIPDFIPSFTNISRSPNQPIPYFHYQN RGRIPSPSPHSFHPMQHQQGQGFMVNNPNPGVNLILPPTMVKPVTVQDFQLQHQKEQG FAVKNPSGGVFSATTVKPVQVHGLNLRQAPISCLLKPYATMNVVPERSMPIENTPPGP PPVAPVSSQLSFPQLSSAVLSELLNSVRAQGLAKPNEETPVEDAVPLEFDAHWLKVRH ESVIRSLYSDFPRQCQTCGQRFKTQENHSKHMDWHVRKNREIKKKKVKPSRQWLLTES QWLACAEALTDTDNGDPPVFVRRDSIVGMENDEELAVRADEDQRVCALCMEAFEDFYS DETEDWMYKEAVYMRAPYGSMSAGKDRSQQGPIVHAKCLPQTGKILNNIG" mobile_element complement(27912154..27912276) /note="source:CACAO_on_S_E46_scaffold_2 1 117" /mobile_element_type="transposon:TIR/Mutator" mobile_element 27913709..27915153 /note="source:INTACT52F_F339_scaffold_1-int 1772 3221" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 27914942..27922026 /locus_tag="TCM_024700" /note="dbxref CacaoGD:Thecc1EG024700" mRNA join(27914942..27915881,27916866..27917470, 27917707..27922026) /locus_tag="TCM_024700" /product="RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g10020.1.5" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031580t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc1Loc2646t8_G4" CDS join(27915357..27915881,27916866..27917470, 27917707..27921259) /locus_tag="TCM_024700" /note="paralog of Thecc1EG031580t1" /codon_start=1 /product="RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H, putative" /protein_id="EOY09277.1" /translation="MDRMERAQKEMREQLAKMMELMMSLSKGKRAIEEPAPLENPPAQ DSENQRDDPSYPPGFTPPHAQTSQRVHPQVMPSIYYNAPPPLGHQPNHGQFGPYPGIN PAEPINVPDLDDPKEQEKLRKDSSQTGENEKDQKKYDLLEERLRAIEGVDRFGTMDAT ELCLVPDVLIPAKFKVQALIKAGLLNFAKKDNSNVDGNPLPNHGGPTVNAIHEGMIRR VKKNVNEIRTPMDRVFEALSKIKAITPESIEIKEVGHDLTLSCKFHMGVVGHSIQNCD GFRLKLQELMDLSEIEFYEESEEEEFWKKIIPFLYETFRFVGCKASDEVNQVPRVFDE LSIHMIKDEELNEIPMVYPVLPGEELSNWTATELPIIFKSSKMSLNNEHEDNLDNDLN IDFEIILNIDELKNEEEVDDYSLPPDLSRMLEQEENEILPHQELTEMIDLGNGEEKKE VKIGTSLSFDERQKLEELLREYVDVFAWSYQDMPGLNTDMVVHKLPLEPDCKPIKQKL RRMKPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEVKRQFDAGFLEVTKYP EWVANIVPVPKKDGKVRVCVDYRDLNRASPKDSFPLPHIDTLVDNTAKHALFSFMDGF SCYNQIKMAPEDMEKTTFVTMWGTFCYKVMPFGLKNAGATYQRAMVALFHDMMHKEIE VYVDDMIAKSHTERDHTVNLKKLFERLRKFQLKLNPVKCTFGVTSGKLLGFIVSEKGI EVDPDKIRAIQELPPPKTQKEVRGFLGRLNYIARFISQLTCKCDPIFKLLRKRDPREW NEECQIAFDKIKEYLTNPPVLIPPTVEKPLILYLTVNKNSMGCVLGQHDETGKKERAV YYLSKKFMEYESKYSALEKMCCALAWTAQRLRQYMLYHTTWLVAKLDPIKYIFEKPCL SGRIARWQVLLSEYDIVYVSQKSIKGSAIADFLADRVNEDYESVSFDFPDEDMMAVLH IEEVGPNELNPWKVYFDGASNAFGHGIGAVLIFPNGKYYPATTRLNFNCNNNMAEYEA LVMGLQAAIEMKADAIDVYGDSALVICQMKGEWETRDPKLVPYKKLVIELSKQFKEIS FNHLPREENRIADALATLAAMFKIKEAADVRPFDLEVREVSAHCLNVEEEVDGRPWYH DIRQYIKHQAYPENVTDNDKRTLRRLAMGFFLSGEVLYKRSRDQVLLRCVDVAEANKI MKEVHEGTCGAHANGHMLARQIMRAGYYWLTLESDCINFARKCHKCQVYADRIHAPPA PLHVFTAPWPFSMWGMDVIGLITPKASNGHRFILVAIDYFTKWVEAASYANVTQKVVC KFIQKEIICRYGLPERIITDNASNLNGAMVKDVCAKFKIKHHNSTTYRPKMNGAVEAA NKNIKKIVEKMTEVYKDWHEKLPFALHAYRTSVRTSTGATPYSLVYGAEAVLPVEVEI PSLRVLMETKLEDAEWVRSRYEQLNLIEEKRLAALCHGQMYQRRMIRAYEKKVHPRQF REGELVLKRILPNQTDFRGKWMPNWEGPYVVKKAFSGGALILILTDMDGGDLPNPINT DAVKKYYA" mobile_element complement(27918221..27922535) /note="source:INTACT60_F127_scaffold_9-int 2515 6804" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27922669..27923761 /note="source:CACAO_on_E459_scaffold_2 1452 2549" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(27929831..27929918) /note="source:CACAO_on_S_E390_scaffold_9 1790 1878" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(27930812..27930955) /note="source:INTACT591_F264_scaffold_1-int 18667 18809" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(27938653..27943001) /locus_tag="TCM_024703" /note="dbxref CacaoGD:Thecc1EG024703" mRNA complement(join(27938653..27939445,27940435..27941541, 27942925..27943001)) /locus_tag="TCM_024703" /product="PCF11P-similar protein 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s04910.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024698t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s00540.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete" CDS complement(join(27939360..27939445,27940435..27941527)) /locus_tag="TCM_024703" /note="paralog of Thecc1EG024698t1" /codon_start=1 /product="PCF11P-similar protein 4" /protein_id="EOY09278.1" /db_xref="Phytozome:POPTR_0011s00540.1" /db_xref="TAIR:AT4G04885.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HZK7" /translation="MAPEVLPPPGKRPRIVAPIPDFIPSFTNISRSPNQPIPYFHYQN RGRIPSPSPHSFHPMQHQQGQGFMVNNPNPGVNLILPPTMVKPVTVQDFQLQHQKEQG FAVKNPSGGVFSATTVKPVQVHGLNLHQAPISCLLKPYATMSVVPERSMPIENTPPGP RPVAPGSSQLSFPQLSSAVLSELLKSVGAQGLAKPNEETPVKDTVPLEFDAHWLKVRH ESVIRSLYSDFPRQCQTCGQRFKTQENHSKHMDWHVRKNREIKKKKVKPSRQWLLTES QWLGCAAALTDTDNGDPPVFVRRDSIVEMKTDEELAVGADEDQRVCALCMEAFEDFYS DETEDWMYKGAVYMRAPNGSMSAGKDRSQLGRAVNKSLQLLPSACSIVYSNAHYELIS " mobile_element 27945092..27945420 /note="source:CACAO_M_S_E119191_F3_scaffold_9 4812 5139" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27945421..27946541) /note="source:INTACT51F_F15_scaffold_1-int 10170 11259" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27948884..27955474) /note="source:CACAO_M_E22398_F15_scaffold_3 875 7481" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 27956838..27957238 /note="source:CACAO_M_S_E119191_F3_scaffold_9 5168 5545" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 27961068..27974301 /locus_tag="TCM_024705" /note="dbxref CacaoGD:Thecc1EG024705" mRNA join(27961068..27961255,27965718..27965798, 27965883..27966014,27966102..27966146,27966851..27966928, 27966997..27967136,27967284..27967377,27968336..27968460, 27968540..27968675,27968762..27968892,27970266..27970391, 27970477..27970532,27970750..27970842,27971616..27971675, 27971760..27971863,27972973..27973101,27973285..27974301) /locus_tag="TCM_024705" /product="DNA-directed RNA polymerase" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400020273" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044750t1" /inference="similar to AA sequence:ricco:29686.m000857" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6061t1" CDS join(27961115..27961255,27965718..27965798, 27965883..27966014,27966102..27966146,27966851..27966928, 27966997..27967136,27967284..27967377,27968336..27968460, 27968540..27968675,27968762..27968892,27970266..27970391, 27970477..27970532,27970750..27970842,27971616..27971675, 27971760..27971863,27972973..27973101,27973285..27973347) /locus_tag="TCM_024705" /note="dbxref ricco:29686.m000857; paralog of Thecc1EG044750t1" /codon_start=1 /product="DNA-directed RNA polymerase" /protein_id="EOY09279.1" /db_xref="TAIR:AT5G45140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SHS2" /translation="MMIRLLTMSRMRIFEVLRLLVLGCNSLAFVKGLTTLTQYKIEKL TSLDGIHTFQDFVRGGLIEYLDVNEQNNALIALYEGEATSETTHIEIEPFTILGVCAG LIPYPHHNQSPRNTYQCAMGKQAMGSIAYNQFSRMDSVLYLLLYPQRPLLTTRTIELV GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKSYTAIYQKNYENG TSDRVLRPQRTGPGSERMQILDDDGLAAPGEIIKPNDIYINKESPIHTTGQRVPADGQ QDIGYKPAKQTFKGPEGESCVVDRVAFCSDKSENLCIKFIIRHTRRPEVGDKFSSRHG QKGVCGTIIQQEDFPFSETGICPDLIMNPHGFPSRMTIGKMIELLGGKAGVSCGRFYY GSAFGEASGHADRVEAISETLVKRGFSYNGKDFLYSGITGCPLQAYIFMGPIYYQKLK HMVRFSSHYSSGPRVMLTRQPTEGRAGNGGLRVGEMERDCLISYGASLLIFERLMISS DPFEVQVCRKCGLLGYFSHMLKRGICSSCSNGDNISMIKLPYACKLLFQKRASFENPF YLNEFMDTFDW" mobile_element 27978828..27980196 /note="source:CACAO_LINE_E_207_scaffold_8 1 1363" /mobile_element_type="retrotransposon:LINE/L1" mobile_element complement(27989191..27989274) /note="source:INTACT44_F119_scaffold_6-int 8583 8667" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 27989591..27990582 /locus_tag="TCM_024707" /note="dbxref CacaoGD:Thecc1EG024707" mRNA 27989591..27990582 /locus_tag="TCM_024707" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036470t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS 27990143..27990487 /locus_tag="TCM_024707" /note="paralog of Thecc1EG036470t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09280.1" /translation="MASRYENAIVFIERDMCTTHPYHNKSFFVETNVNEYLIWRVFID DGSLVNLKLLSTLKALKINLKGLFHPMTITFFNKKEIKTLGQVMVSFKMGLFMTRLAS TLLMLMWPIIPS" mobile_element complement(27991763..27991898) /note="source:INTACT1818F_F49_scaffold_11-int 5849 5942" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27991874..27992120) /note="source:INTACT711_F307_scaffold_9-int 1722 1968" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27992085..27993361) /note="source:scaffold_6_CACTA_0709 4352 5641" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(27992742..27993722) /note="source:CACAO_M_E58936_F66_scaffold_9 1 999" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(27993729..27993863) /note="source:INTACT711_F307_scaffold_9-int 873 1000" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(28000957..28003514) /locus_tag="TCM_024708" /note="dbxref CacaoGD:Thecc1EG024708" mRNA complement(join(28000957..28001333,28001413..28001513, 28003500..28003514)) /locus_tag="TCM_024708" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033295001" /inference="similar to AA sequence:Phytozome:GSVIVT01033295001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.43 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14085t1" CDS complement(join(28001185..28001333,28001413..28001506)) /locus_tag="TCM_024708" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09281.1" /db_xref="Phytozome:GSVIVT01033295001" /db_xref="TAIR:AT1G01170.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9V4" /translation="MATKYIIPAVLGSFAIAYVCDQLIADKKIFGGTTPSTVSNKEWW EETDKKFQAWPRTAGPPVVMNPISRQNFIVKAGSES" gene 28003724..28004758 /locus_tag="TCM_024709" /note="dbxref CacaoGD:Thecc1EG024709" mRNA join(28003724..28004093,28004183..28004413, 28004492..28004758) /locus_tag="TCM_024709" /product="Uncharacterized protein" /inference="similar to AA sequence:Phytozome:POPTR_0005s13850.1" /note="quality class is strong, express is strong, homology is paralog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2857t1" CDS join(28003875..28004093,28004183..28004413, 28004492..28004650) /locus_tag="TCM_024709" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09282.1" /db_xref="Phytozome:POPTR_0005s13850.1" /translation="MKEDSPSAENMRGNSLVRDLPWLKPLLQTEFYRSCECKSSKQCN FYCRDCMGSPFCENCNNDPHKHEGHGSLQVYKSSSRPGIRIRGIKNLMDVSDIQPYLC NSFKLVYIHRKRKQEHESRINGRKGDKCEACGYELQCSTSKFCSIECKVNGVKDVEEE TSTEEVHATATTRPTCQPLAQADPNSFRKRKRKGIPQRSPFL" gene complement(28004837..28020763) /locus_tag="TCM_024710" /note="dbxref CacaoGD:Thecc1EG024710" mRNA complement(join(28004837..28005812,28006034..28006231, 28006423..28006548,28006625..28006765,28006877..28007077, 28007410..28007537,28008896..28008971,28010339..28010488, 28011119..28011547,28011655..28011804,28011989..28012281, 28012446..28012642,28012748..28012938,28013948..28013995, 28016420..28016548,28016690..28016804,28017721..28017836, 28018969..28019043,28019493..28019816,28020161..28020205, 28020484..28020763)) /locus_tag="TCM_024710" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s05540.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005862t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05540.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6151t3" CDS complement(join(28005651..28005812,28006034..28006231, 28006423..28006548,28006625..28006765,28006877..28007077, 28007410..28007537,28008896..28008971,28010339..28010488, 28011119..28011547,28011655..28011804,28011989..28012281, 28012446..28012642,28012748..28012938,28013948..28013995, 28016420..28016548,28016690..28016804,28017721..28017836, 28018969..28019043,28019493..28019639)) /locus_tag="TCM_024710" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG005862t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY09283.1" /db_xref="Phytozome:POPTR_0016s05540.1" /db_xref="TAIR:AT2G41830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9II73" /translation="MSSISGVISRQVLPACGSLCFFCPAMRARSRQPVKRYKKLIAEI FPRNQEEGANDRKIGKLCDYASKNPLRIPKISNSLEQRCYKELRNENFQSAKIVMCIY RKLLVSCKEQMTLFASSLLSIIQTLLDQTRQDEMRIMGCQTLFDFVNNQKDGTFMFNL EGFIPKLCQLAQEIGEGERERKLCSAGLQALSSMIWFMGEHSHISVEFDNIVSVVVES YGGPRKNLENPNGAQSRWVQEVLKNEGHVSPSPDVLIRVPSWGAIVNDKGEPNVTAED AQNPCFWSRVCLHNMANLAKEATTTRRVLESLFRYFDKENLWSLQNGLAFSVLKDIQL LMDSSGQNTHFLLSVLVKHLDHKNILKQPDMQLQIIEVTASLAELSKAEPSVAILGAV SDVMRHLRKSIHCLLDDATMGADIINWNRNFKEAVDNCLVQLAHKVGDAGPILDAMAV MLENISNITVIARTTICVVYRTAQIVASIPNPSYLNKAFPEALFHQLLPAMVHPDHET RIGAHRIFSVVLVPSSVCPQPSSVSPVTIKGSGIPRTLSRTVSVFSSSAALFEKLRKD KSFARENACLENKGNIDSEVELKNSNNGILNRLKSSYSRTYSSRSPPIPLPMDGNPLS NSNKQSEANSLRLSSTQISLLLSSIWAQSISPENTPQNYEAIAHTYSLVLLFSRAKNS GNKALVRSFQLAFSLRSISLNEGGPLPPSRRRSLFTLATSMILFSSKAFSIVPIVYCA KVALTERMVDPFMRLVEDRKLEAVNAGSDQPTNVYGSKEDDNLALKTLSQIQITPEQR RETLASEILKSLGNLSEPELSTTRAQLLNEFLPDDVCPLGVQLPMDAPHKVYQVDVGD NKSIKEEAPIFSTDNYAFPEPFEGQTKDNSELPVEIPNLLDVNQLLESVLETAHQFGR SSISTGPDMSYKEMAHHCEALLTGKQKKMSDLMSAQLRQESLISLSFQHPDNETKQAG PVLEQTGSPNPYKQSVGTLPMLCATEYQNHPLSFRLPASSPYDNFLKAAGC" mRNA complement(join(28006877..28007077,28008896..28008971, 28010339..28010488,28011119..28011547,28011655..28011804, 28011989..28012281,28012446..28012642,28012748..28012938, 28013948..28013995,28016420..28016548,28016690..28016804, 28017721..28017836,28018969..28019043,28019493..28019816, 28020161..28020274)) /locus_tag="TCM_024710" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s05540.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005862t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05540.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1207t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6151t3" mRNA complement(join(<28006877..28007077,28007410..28007537, 28008896..28008971,28010339..28010488,28011119..28011547, 28011655..28011804,28011989..28012281,28012446..28012642, 28012748..28012938,28013948..28013995,28016420..28016548, 28016690..28016804,28017693..28017836,28018969..28019043, 28019493..28019816,28020161..28020274)) /locus_tag="TCM_024710" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s05540.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005862t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05540.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1216t9; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6151t3" CDS complement(join(<28006877..28007077,28007410..28007537, 28008896..28008971,28010339..28010488,28011119..28011547, 28011655..28011804,28011989..28012281,28012446..28012642, 28012748..28012938,28013948..28013995,28016420..28016548, 28016690..28016737)) /locus_tag="TCM_024710" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005862t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY09284.1" /db_xref="Phytozome:POPTR_0016s05540.1" /db_xref="TAIR:AT2G41830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9II73" /translation="MRIMGCQTLFDFVNNQKDGTFMFNLEGFIPKLCQLAQEIGEGER ERKLCSAGLQALSSMIWFMGEHSHISVEFDNIVSVVVESYGGPRKNLENPNGAQSRWV QEVLKNEGHVSPSPDVLIRVPSWGAIVNDKGEPNVTAEDAQNPCFWSRVCLHNMANLA KEATTTRRVLESLFRYFDKENLWSLQNGLAFSVLKDIQLLMDSSGQNTHFLLSVLVKH LDHKNILKQPDMQLQIIEVTASLAELSKAEPSVAILGAVSDVMRHLRKSIHCLLDDAT MGADIINWNRNFKEAVDNCLVQLAHKVGDAGPILDAMAVMLENISNITVIARTTICVV YRTAQIVASIPNPSYLNKAFPEALFHQLLPAMVHPDHETRIGAHRIFSVVLVPSSVCP QPSSVSPVTIKGSGIPRTLSRTVSVFSSSAALFEKLRKDKSFARENACLENKGNIDSE VELKNSNNGILNRLKSSYSRTYSSRSPPIPLPMDGNPLSNSNKQSEANSLRLSSTQIS LLLSSIWAQSISPENTPQNYEAIAHTYSLVLLFSRAKNSGNKALVRSFQLAFSLRSIS LNEGGPLPPSRRRSLFTLATSMILFSSKAFSIVPIVYCAKVALTERMVDPFMRLVEDR KLEAVNAGSDQPTNVYGSKEDDNLALKTLSQIQITPEQRRETLASEILKSLGNLSE" CDS complement(join(28007073..28007077,28008896..28008971, 28010339..28010488,28011119..28011547,28011655..28011804, 28011989..28012281,28012446..28012642,28012748..28012938, 28013948..28013995,28016420..28016548,28016690..28016804, 28017721..28017836,28018969..28019043,28019493..28019639)) /locus_tag="TCM_024710" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG005862t1" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY09285.1" /db_xref="Phytozome:POPTR_0016s05540.1" /db_xref="TAIR:AT2G41830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9II73" /translation="MSSISGVISRQVLPACGSLCFFCPAMRARSRQPVKRYKKLIAEI FPRNQEEGANDRKIGKLCDYASKNPLRIPKISNSLEQRCYKELRNENFQSAKIVMCIY RKLLVSCKEQMTLFASSLLSIIQTLLDQTRQDEMRIMGCQTLFDFVNNQKDGTFMFNL EGFIPKLCQLAQEIGEGERERKLCSAGLQALSSMIWFMGEHSHISVEFDNIVSVVVES YGGPRKNLENPNGAQSRWVQEVLKNEGHVSPSPDVLIRVPSWGAIVNDKGEPNVTAED AQNPCFWSRVCLHNMANLAKEATTTRRVLESLFRYFDKENLWSLQNGLAFSVLKDIQL LMDSSGQNTHFLLSVLVKHLDHKNILKQPDMQLQIIEVTASLAELSKAEPSVAILGAV SDVMRHLRKSIHCLLDDATMGADIINWNRNFKEAVDNCLVQLAHKVGDAGPILDAMAV MLENISNITVIARTTICVVYRTAQIVASIPNPSYLNKAFPEALFHQLLPAMVHPDHET RIGAHRIFSVVLVPSSVCPQPSSVSPVTIKGSGIPRTLSRTVSVFSSSAALFEKLRKD KSFARENACLENKGNIDSEVELKNSNNGILNRLKSSYSRTYSSRSPPIPLPMDGNPLS NSNKQSEANSLRLSSTQISLLLSSIWAQSISPENTPQNYEAIAHTYSLVLLFSRAKNS GNKALVRSFQLAFSLRSISLNEGG" mobile_element complement(28008136..28008555) /note="source:CACAO_MITE131_scaffold_8 2 422" /mobile_element_type="transposon:TIR/MITE" gene complement(28022231..28024554) /locus_tag="TCM_024711" /note="dbxref CacaoGD:Thecc1EG024711" mRNA complement(join(28022231..28023248,28024297..28024554)) /locus_tag="TCM_024711" /product="Zinc finger (C2H2 type, AN1-like) family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s05070.2" /inference="similar to AA sequence:Phytozome:POPTR_0006s05070.2" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02308t00001" CDS complement(join(28022460..28023248,28024297..28024395)) /locus_tag="TCM_024711" /codon_start=1 /product="Zinc finger (C2H2 type, AN1-like) family protein" /protein_id="EOY09286.1" /db_xref="Phytozome:POPTR_0006s05070.2" /db_xref="TAIR:AT2G41835.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VZ42" /translation="MGTPEFPDLGKHCSVEDCKQIDFLPFTCDRCRLVFCLEHRSYIK HRCPKADKKDVTVVICPLCAKGVHLIPDEDPNITWETHVNTECDPSNYDKVTKKKKCP VPGCREVLTFSNTIKCRDCTIDHCLKHRFGPDHNCPGPKKPDSGFPFMGLLSRSRKEE SKPNRAPATSSTNWATSFRNAASTVRATAEASMTKLSSELSQKWQIARDGAGLSGSSS SSSNGSTAQVEECPQCGAKFSSVTTLVEHVEKVHERNNQSRVFKMSIDVCPRCSKGFR DPVALVEHVERDHGGTSKA" gene 28026251..28026820 /locus_tag="TCM_024712" /note="dbxref CacaoGD:Thecc1EG024712" mRNA 28026251..28026820 /locus_tag="TCM_024712" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29761.m000415" /inference="similar to AA sequence:ricco:29761.m000415" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14072t1" CDS 28026251..28026562 /locus_tag="TCM_024712" /note="dbxref ricco:29761.m000415" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09287.1" /db_xref="TAIR:AT3G57500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5Q0C3" /translation="MEARLQDQFVPAVQAPPTVREPSRYSHRSIETLIVVLAVITIIG VIAGIIARLCGGRHFGGNGENDIEGWIERKCRSCIDGGVTTAAPSPAEGSKPAAEEAK K" gene complement(28028158..28036689) /locus_tag="TCM_024713" /note="dbxref CacaoGD:Thecc1EG024713" mRNA complement(join(28028158..28029304,28029645..28029995, 28030357..28030559,28031207..28031471,28031594..28031806, 28031887..28032012,28032379..28032516,28032603..28032948, 28033026..28033292,28033965..28034166,28034257..28034332, 28034421..28034641,28034733..28034925,28035498..28035887, 28036564..28036689)) /locus_tag="TCM_024713" /product="Cellulose synthase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s05520.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005879t6" /inference="similar to AA sequence:Phytozome:POPTR_0016s05520.2" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6154t2" CDS complement(join(28028720..28029304,28029645..28029995, 28030357..28030559,28031207..28031471,28031594..28031806, 28031887..28032012,28032379..28032516,28032603..28032948, 28033026..28033292,28033965..28034166,28034257..28034332, 28034421..28034641,28034733..28034925,28035498..28035521)) /locus_tag="TCM_024713" /note="paralog of Thecc1EG005879t6" /codon_start=1 /product="Cellulose synthase family protein" /protein_id="EOY09288.1" /db_xref="Phytozome:POPTR_0016s05520.2" /db_xref="TAIR:AT5G05170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q69P51" /translation="MDSAADSVSKSGKMGGQVCQICSDNVGLTADSEPFVACHVCAFP VCRPCYEYERKDGTQSCPQCKTKYKRHKGSPPIAGEEVEDAGANNVANNSNHTAGTQG EKYKKAERTLSWDTNYSRGEDVAPPNYDKEVPLNHIPFLTNGSSVSGELSAASPARIS MASPESGIRGKGNIRLADPAREFGSSGFGNVAWKERIDGWKIKPEKNAVPMSVSNAPS EGRGGGDFDASTDVVMDDSILNDEARQPLSRKVSVPSSRINPYRMVIVLRLIILCIFL HYRITNPVRNAYALWLISVICEIWFAISWILDQFPKWLPVNRETYLDRLALRYDREGE PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEAL SETSEFARKWVPFCKKYSIEPRAPEWYFSQKIDYLKDKVQPAFVKERRAMKREYEEFK VRINGLVAKAQKVPDEGWVMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDSDGNELPRL VYVSREKRPGFLHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSRALREAMCFM MDPNLGKSVCYVQFPQRFDGIDKNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFN RTALYGYEPPLKPKHKKPGLLSSCFGGSRKKISKTSRKDANKKKSGKNVNSTVPIYNL EDIEEGVEGAGFNDENSLLMSQMTLEKKFGQSAVFVASTLMENGGVPQSATPESLLKE AIHVISCGYEDTTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPQRPAFKGSAP INLSDRLNQVLRWALGSVEILLSRHCPIWYGYGGRLKWLERFAYINTTIYPITAIPLL AYCTLPAVCLLTGKFIIPQISNIASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQ FWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYLFKWTTLLIPPT TLLIINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRMPT IVVVWAILLASIFSLLWVRIDPFTTQVTGPDVEQCGINC" gene complement(28036720..28039580) /locus_tag="TCM_024714" /note="dbxref CacaoGD:Thecc1EG024714" mRNA complement(join(28036720..28037222,28037334..28037450, 28037543..28037651,28037784..28037865,28037963..28038170, 28038422..28038442,28038536..28038703,28038834..28038965, 28039209..28039580)) /locus_tag="TCM_024714" /product="Polygalacturonase abscission zone A, putative" /inference="alignment:exonerate- protein:2:Phytozome:Sb01g004230.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024715t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s05120.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc3174t1" mobile_element complement(28036821..28036876) /note="source:INTACT83_F5_scaffold_9-int 10295 10351" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(28036980..28037222,28037334..28037450, 28037543..28037651,28037784..28037865,28037963..28038170, 28038422..28038442,28038536..28038703,28038834..28038965, 28039209..28039511)) /locus_tag="TCM_024714" /note="paralog of Thecc1EG024715t1" /codon_start=1 /product="Polygalacturonase abscission zone A, putative" /protein_id="EOY09289.1" /db_xref="Phytozome:POPTR_0006s05120.1" /db_xref="TAIR:AT2G41850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C9EA45" /translation="MTLQRHLLLFSIIFFCLSSTYHLGEASSYNAQASPSYFSSIWNG KFKGFFKQTTQDLTLHRFDDDGDENYPSLPAGPGRPASKTVSVDDFGAKGDGSDDTEA FKKAWEQACSSADGVALVVPKEKSYRVKPIRFTGPCKSNLRVEIYGTIEASDDQSDYQ EDARHWLVFDGVRNLIVGGGGTINGNGKIWWENSCKRNKDKPCTGAPTALTFYENQHL MVNNLKIQDAQKMHVSFEKCVDVEASNLVVTAPEDSPNTDGIHVTNTQNILIASSTIG TGDDCISIVSGSQKVEAQDIICGPGHGISIGSLGKGNSRDYVSGVIVNGAKISGTSNG VRIKTWQGGSGSANNIRFQNVEMSNVTNPIIIDQNYCDQDKPCKEQPSAVQVQNVVYQ NIEGTSASDVAIVFNCSKSHPCQGITLQDVNLIGEGGEATTATCNNVQITMIGNVSPG CSLEERSMIA" gene complement(28039700..28044910) /locus_tag="TCM_024715" /note="dbxref CacaoGD:Thecc1EG024715" mRNA complement(join(28039700..28039831,28040572..28040771, 28040854..28041216,28041307..28041423,28041524..28041632, 28041855..28041936,28042040..28042247,28043111..28043131, 28043228..28043395,28043492..28043623,28044488..28044910)) /locus_tag="TCM_024715" /product="Pectin lyase-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Sb01g004230.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024714t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s05120.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6108t3" CDS complement(join(28041001..28041216,28041307..28041423, 28041524..28041632,28041855..28041936,28042040..28042247, 28043111..28043131,28043228..28043395,28043492..28043623, 28044488..28044799)) /locus_tag="TCM_024715" /note="paralog of Thecc1EG024714t1" /codon_start=1 /product="Pectin lyase-like superfamily protein" /protein_id="EOY09290.1" /db_xref="Phytozome:POPTR_0006s05120.1" /db_xref="TAIR:AT3G57510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C9EA45" /translation="MALQIRQLIQHFIIVFSLFSRYNALKEDPRYNYYKEVVAGYDPQ AYPSYVSTLEDGEFKDLIRPSAEVLSLSRLGEVDIITSTSTKTVNVDDFGATGDGDDD TQAFEEAWKEACSSKGTVVLEVPEGKSYLLRPVRFSGPCKSNLTIQIYGTIEASDDRS DYKEDSRHWLIFDSVHNLLVEGGGNINGNGKIWWQNSCKINKDLPCKDAPTALTFYKS KNLVVKDLNIQDAQKIHVSFDKCTNVQASNLTVTAPEKSPNTDGIHVTHTQNIQITNS VIGTGDDCISIVSESQNVQAMDISCGPGHGISIGSLGSRNSRAYVSGVTVDRAKLSGT TNGVRIKTWQGGSGSASNIKFQNIEMFNVTNPIIINQNYCDQDKPCKEQSSAVQVKNV LYKNIKGTSASEVAIKFDCSESHPCQGIVLQNVYLQEQGHETAKAICNNVKLSEEDVF PQCP" mobile_element 28045907..28048879 /note="source:CACAO_M_E44016_F15_scaffold_5 1 2973" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 28047985..28054348 /locus_tag="TCM_024716" /note="dbxref CacaoGD:Thecc1EG024716" mRNA join(28047985..28048123,28049871..28050194, 28050630..28050809,28053210..28053293,28054022..28054348) /locus_tag="TCM_024716" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.15 coverage" mobile_element complement(28048736..28048900) /note="source:CACAO_M_S_E66657_F76_scaffold_5 748 910" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(28049934..28050194,28050630..28050809, 28053210..28053293,28054022..28054087) /locus_tag="TCM_024716" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09291.1" /translation="MEMNGLRISTKEVVDVEESSVKCSTRYRSEPGQDKGLAINVQSP IHSYATSGNSLKPHPLVSRRRKSYSALYSPITLNSLHDDDDLELICRHHGWWVEILTP LSVVRNGCMVQLPMMDPWKTLLPPYLIAAFWMRALKAVTILGLTTIPIDSSQDDVAYW TLTPNGEFSTRSAWESYKLCLRACYCAKSAILIIYG" gene 28054715..28060319 /locus_tag="TCM_024717" /note="dbxref CacaoGD:Thecc1EG024717" mRNA join(28054715..28054849,28057556..28058213, 28058410..28059020,28059229..28060319) /locus_tag="TCM_024717" /product="Pentatricopeptide repeat superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400041048" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026249t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033304001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.39 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6383t1" CDS join(28058144..28058213,28058410..28059020, 28059229..28060056) /locus_tag="TCM_024717" /note="paralog of Thecc1EG026249t1" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein" /protein_id="EOY09292.1" /db_xref="Phytozome:GSVIVT01033304001" /db_xref="TAIR:AT1G59720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RZK3" /translation="MPQYARYLSNPRVSSHSPPAYLSRYPSANTFTLAFVLKACSNLL AFEEGQQVHARVFRSGFGSNPFVQTGLVNFYAKCENMGLAKKVFYEIPERNLVAWSTM ISGYAMMGSVNEAFGAFREMQKVGILPDEVTMVSVISACAAAGALDIGRWVHAYIEKQ MIEIDIMLSTALVNMYAKCGCIEKAKELFERMPVKDQKAWSSMIVALAVHGLAEEALE AFSRMEESKVKPNHVTFVGILAACAHSGLVSEGRRYWSSMIESGIEPSIEHYGCMIDL LCRASLVGEAYNFVQTMPFSPNAVIWRTLLVGCQKNKMLHKGEIAAEQLLALEPLNTE NYILLSNLYASVSQWEKMSHVRKMMKEKGIKGVPGCTSIEIDGFVHEFVMGDWSHPEE KEIRQVLKDISERVSGSGHEPHISDVLHNVADEEKGTYLCEHSERLAIAYGLLKTKAP APIRIVKNLRICSDCHEVTKIISKIYGREIIVRDRVRFHKFVNGTCSCIDYW" gene complement(28060331..28068630) /locus_tag="TCM_024718" /note="dbxref CacaoGD:Thecc1EG024718" mRNA complement(join(28060331..28061208,28061301..28061389, 28061599..28061816,28061899..28062033,28062134..28062201, 28062442..28062994,28063545..28063667,28064674..28064781, 28064891..28064982,28065128..28065176,28065411..28065501, 28065810..28066045,28066810..28067023,28068428..28068630)) /locus_tag="TCM_024718" /product="Seed imbibition 2 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene25218" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030539t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s05130.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04263t00001" CDS complement(join(28060846..28061208,28061301..28061389, 28061599..28061816,28061899..28062033,28062134..28062201, 28062442..28062994,28063545..28063667,28064674..28064781, 28064891..28064982,28065128..28065176,28065411..28065501, 28065810..28066045,28066810..28067000)) /locus_tag="TCM_024718" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG030539t1" /codon_start=1 /product="Seed imbibition 2 isoform 1" /protein_id="EOY09293.1" /db_xref="Phytozome:POPTR_0006s05130.1" /db_xref="TAIR:AT3G57520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94A08" /translation="MTVTPRISINDGNLVVHGKTILTGVPDNIVLTPGSGVGLVAGTF IGATASDSKSLHVFPIGVLEGLRFMCCFRFKLWWMTQRMGTCGKDVPFETQFMLVESK EEDDPNAPTIYTVFLPLLEGQFRAVLQGNDKNEIEICLESGDNAVETNRGLYLVYMHA GTNPFEVINQAVTAVEKHMQTFLHREKKKVPSFLDWFGWCTWDAFYTDVTAEGVEEGL KSLSEGGTPPRFLIIDDGWQQIENKPKDSDCVVQEGAQFASRLTGIKENAKFQKNGQD SEQISGLKHVVDKAKQHHDVKYVYVWHALAGYWGGVKPAAAGMEHYDTALAYPVQSPG VMGNQPDIVMDSLAVHGLGLVHPKKVFNFYNELHAYLASCGVDGVKVDVQNIIETLGA GHGGRVSLTRSYVQALEASIARNFCDNGCIACMCHNTDGIYSTKQTAVVRASDDFYPR DPASHTIHISSVAYNTLFLGEFMQPDWDMFHSLHPAAEYHAAARAIGGCAIYVSDKPG NHNFELLKKLVLPDGSVLRAQLPGRPTRDCLFADPARDGISLLKIWNVNKCSGVVGVF NCQGAGWCKITKKTRIHDASPGTLTGSVCVNDVDSITQVAGADWNGETVVYAHRSGEV VRLPKGASVPVTLKVLEYELFHFCPVKEITTNISFAPIGLLDMFNSSAAVEQFEVQTV ANREPELFDGEVSSELTTSLSSNRSPTATIKLKVRGCGQFGAFSSQRPLKCTVGNTET DFNYDLATGLVTLTLPVAPEEKYRWPIEIQV" mRNA complement(join(28061141..28061208,28061301..28061391, 28061591..28061816,28061899..28062033,28062134..28062201, 28062442..28062994,28063545..28063667,28064674..28064781, 28064891..28064982,28065128..28065176,28065411..28065501, 28065810..28066045,28066810..28067025,28067142..28067918)) /locus_tag="TCM_024718" /product="Seed imbibition 2 isoform 2" /inference="alignment:exonerate-protein:2:frave:gene25218" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030539t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s05130.3" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc79t17; inference alignment:Newbler:10:TSA:cgbaB_g04263t00001; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc975t19" CDS complement(join(28061368..28061391,28061591..28061816, 28061899..28062033,28062134..28062201,28062442..28062994, 28063545..28063667,28064674..28064781,28064891..28064982, 28065128..28065176,28065411..28065501,28065810..28066045, 28066810..28067000)) /locus_tag="TCM_024718" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG030539t1" /codon_start=1 /product="Seed imbibition 2 isoform 2" /protein_id="EOY09294.1" /db_xref="Phytozome:POPTR_0006s05130.3" /db_xref="TAIR:AT3G57520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94A08" /translation="MTVTPRISINDGNLVVHGKTILTGVPDNIVLTPGSGVGLVAGTF IGATASDSKSLHVFPIGVLEGLRFMCCFRFKLWWMTQRMGTCGKDVPFETQFMLVESK EEDDPNAPTIYTVFLPLLEGQFRAVLQGNDKNEIEICLESGDNAVETNRGLYLVYMHA GTNPFEVINQAVTAVEKHMQTFLHREKKKVPSFLDWFGWCTWDAFYTDVTAEGVEEGL KSLSEGGTPPRFLIIDDGWQQIENKPKDSDCVVQEGAQFASRLTGIKENAKFQKNGQD SEQISGLKHVVDKAKQHHDVKYVYVWHALAGYWGGVKPAAAGMEHYDTALAYPVQSPG VMGNQPDIVMDSLAVHGLGLVHPKKVFNFYNELHAYLASCGVDGVKVDVQNIIETLGA GHGGRVSLTRSYVQALEASIARNFCDNGCIACMCHNTDGIYSTKQTAVVRASDDFYPR DPASHTIHISSVAYNTLFLGEFMQPDWDMFHSLHPAAEYHAAARAIGGCAIYVSDKPG NHNFELLKKLVLPDGSVLRAQLPGRPTRDCLFADPARDGISLLKIWNVNKCSGVVGVF NCQGAGWCKITKKTRIHDASPGTLTGSVCVNDVDSITQVAGADWNGETVVYAHRSGNS RGGGTVT" mobile_element 28068899..28068958 /note="source:scaffold_3_CACTA_0382 1861 1921" /mobile_element_type="transposon:TIR/CACTA" gene complement(28074395..28077719) /locus_tag="TCM_024720" /note="dbxref CacaoGD:Thecc1EG024720" mRNA complement(join(28074395..28074758,28075418..28075954, 28076072..28076141,28077695..28077719)) /locus_tag="TCM_024720" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.62 coverage" CDS complement(28075627..28075821) /locus_tag="TCM_024720" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09295.1" /translation="MEKLVRKPCEVSKSIREKNVCRGFATVVTDSMGVRGRDNYWLNY SDNQVSQIDFRLSHEFYQIT" mobile_element 28075707..28078443 /note="source:CACAO_M_E44017_F73_scaffold_5 1 2737" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28084296..28084707 /note="source:INTACT642F_F365_scaffold_5-int 1 400" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 28091062..28093975 /locus_tag="TCM_024723" /note="dbxref CacaoGD:Thecc1EG024723" mRNA join(28091062..28091307,28091412..28091578, 28091841..28091918,28092008..28092154,28092557..28092689, 28093134..28093226,28093436..28093975) /locus_tag="TCM_024723" /product="Light-harvesting complex II protein Lhcb7" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013450001" /inference="similar to AA sequence:Phytozome:POPTR_0005s28000.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11551t00001" CDS join(28091140..28091307,28091412..28091578, 28091841..28091918,28092008..28092154,28092557..28092689, 28093134..28093226,28093436..28093738) /locus_tag="TCM_024723" /codon_start=1 /product="Light-harvesting complex II protein Lhcb7" /protein_id="EOY09296.1" /db_xref="Phytozome:POPTR_0005s28000.1" /db_xref="TAIR:AT1G76570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H5X9" /translation="MAQIGPQLRLSSISSSFFNGGGGEDRRSLSTFLSLKPPSNLNSA KPRSFCKASWQELAGVLVFSAIPFTVVKAIAYSPLGESLQRQLLEKKKEAVQNSSKFR ALADKARNERITPPVDVRLKNLRICALGILFVYQLSFWYGEDRPRWLGPIRYDYPEYL TGELPGDYGFDIAGLSKDPVDFQKYFNFEILHARWAMLAALGVVVPEILDLSGFSHFV EPVWWRVGYSKLQGETLDYLGIPGLHLAGGQGVIVIAICQALLMVGPEYARYCGIEAL EPLGIYLPGDINYPGGVLFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYSQAAL TGKGPVQNLLEHLSDPFHNNLFSILKSM" mobile_element complement(28094586..28094906) /note="source:CACAO_on_E565_scaffold_5 13481 13795" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(28095829..28100863) /locus_tag="TCM_024724" /note="dbxref CacaoGD:Thecc1EG024724" mRNA complement(join(28095829..28096541,28096900..28097130, 28097549..28097716,28097827..28097942,28098095..28098247, 28098674..28098817,28098935..28099058,28099794..28100863)) /locus_tag="TCM_024724" /product="Calcium-dependent protein kinase 19" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g32260.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040717t1" /inference="similar to AA sequence:ricco:29761.m000421" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14088t2" CDS complement(join(28096386..28096541,28096900..28097130, 28097549..28097716,28097827..28097942,28098095..28098247, 28098674..28098817,28098935..28099058,28099794..28100303)) /locus_tag="TCM_024724" /note="dbxref ricco:29761.m000421; paralog of Thecc1EG040717t1" /codon_start=1 /product="Calcium-dependent protein kinase 19" /protein_id="EOY09297.1" /db_xref="TAIR:AT5G19450.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A9THK5" /translation="MGNCCATPSTGSHEKKNKGKKKQNPFSIDYGQHHQGNGGHKLSV LKDPTGTEIEQSYELGRELGRGEFGITYLCTDKVTGDTFACKSISKKKLRTAVDIDDV RREVEIMKHLPKHPNIVSLKDTYEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAV VTKTIVEVVQMCHKHGVMHRDLKPENFLFANKKETAALKAIDFGLSVFFKPGERFTEI VGSPYYMAPEVLKRNYGPEVDVWSAGVILYILLCGVPPFWAETEQGVAQAIIRSFIDF KRDPWPKVSDNAKDLVRKMLNPDPKQRLTAQEVLDHPWLQNAKKAPNVSLGETVKARL KQFSVMNKLKKRALRVIAEHLSVEEVAGIKEVFQLMDTGNRGKINIDELRVGLHKLGH TIPDADLQILMEAGDVDRDGYLDYGEFVAISVHLRKMGNDEHLKKAFEFFDRNQSGFI EIEELRDALADEVETNSEEVISAIMHDVDTDKDGRISYDEFAAMMKAGTDWRKASRQY SRERFNSLSLKLMRDGSLQSNNEPR" gene complement(28109312..28119347) /locus_tag="TCM_024725" /note="dbxref CacaoGD:Thecc1EG024725" mRNA complement(join(28109312..28110166,28110983..28111118, 28112130..28112325,28112698..28112863,28113396..28113490, 28114108..28114192,28114262..28114413,28114764..28114880, 28115020..28115154,28115441..28115530,28116301..28116453, 28116833..28117009,28117897..28118100,28118777..28118886, 28118973..28119347)) /locus_tag="TCM_024725" /product="Elongation factor family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033307001" /inference="similar to AA sequence:Phytozome:GSVIVT01033307001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1259t1" CDS complement(join(28109755..28110166,28110983..28111118, 28112130..28112325,28112698..28112863,28113396..28113490, 28114108..28114192,28114262..28114413,28114764..28114880, 28115020..28115154,28115441..28115530,28116301..28116453, 28116833..28117009,28117897..28118100,28118777..28118886, 28118973..28119183)) /locus_tag="TCM_024725" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Elongation factor family protein isoform 1" /protein_id="EOY09298.1" /db_xref="Phytozome:GSVIVT01033307001" /db_xref="TAIR:AT5G13650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K409" /translation="MEMAISFHNSYLKAPSINPNPKLPLPKQLFGLNLSSLSSFNSKT TCLKFRSRNLTKPVKCSVSQATQPATEKKSQLMRRRDIRNIAIVAHVDHGKTTLVDAM LKQSKVFRDNQFVQERVMDSNDLERERGITILSKNTSITYKDTKINIIDTPGHSDFGG EVERILNMVDGVLLVVDSVEGPMPQTRFVLKKALEFGLAVVVVVNKIDRPSARPDFVI NSTFELFIELNATDEQCDFQVIYASGIKGKAGLSPDNLAEDLGPLFESIIRCIPGPRI DKDGALQMLATNIEYDEHKGRIAIGRLHAGVLQRGMEVRVCTSEDSCRYARISELFVY EKFSRIPAERVEAGDICAVCGIEDIQIGETIADKTSGKPLPAIKVEEPTVKMAFSINT SPFVGREGKYVTSRNLRDRLYRELERNLAMRVEDGETADTFIVSGRGTLHITILIENM RREGYEFMVGPPKVINKKIDDKLLEPYEIATVEVPEEHMGAVVELLGKRRGQMIDMQG VGSEGTTFLKYKIPTRGLLGLRNAILTASRGTAILNTIFDSYGPWAGDIITRDQGSLV AFEDGSSSSYALASSQERGQMFIGPGMEVYKGQIVGIHQRPGDLSLNVCKKKAATNIR SNKEQTVVLDTPLDYSLDDCIEYIQEDELVEVTPSSIRMCKNPKFAAAKKSRSEGFPI DKSTQTYSIDESILLIPQKNNLITIQDVSASIIQARRTLSRNIYCTKDDRVSHGQDFS AEIWVKPELEGKQGKIQIEDEVTETRSHSDVRLSHQQQSMGAAGLLVLDQIQGWWFIT KNCPFPGQKACNVD" mRNA complement(join(28110502..28111121,28112130..28112325, 28112698..28112863,28113396..28113490,28114108..28114192, 28114262..28114413,28114764..28114880,28115020..28115154, 28115441..28115530,28116301..28116453,28116833..28117009, 28117897..28118100,28118777..28118886,28118973..28119183)) /locus_tag="TCM_024725" /product="Elongation factor family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033307001" /inference="similar to AA sequence:Phytozome:GSVIVT01033307001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6193t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6193t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1259t1" mRNA complement(join(28110801..28111118,28112130..28112325, 28112698..28112863,28113396..28113490,28114108..28114192, 28114262..28114413,28114764..28114880,28115020..28115154, 28115441..28115530,28116301..28116474,28116833..28117009, 28117897..28118100,28118777..28118800)) /locus_tag="TCM_024725" /product="Elongation factor family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033307001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003535t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033307001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1259t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6193t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1259t1" CDS complement(join(28110979..28111121,28112130..28112325, 28112698..28112863,28113396..28113490,28114108..28114192, 28114262..28114413,28114764..28114880,28115020..28115154, 28115441..28115530,28116301..28116453,28116833..28117009, 28117897..28118100,28118777..28118886,28118973..28119183)) /locus_tag="TCM_024725" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Elongation factor family protein isoform 2" /protein_id="EOY09299.1" /db_xref="Phytozome:GSVIVT01033307001" /db_xref="TAIR:AT5G13650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K409" /translation="MEMAISFHNSYLKAPSINPNPKLPLPKQLFGLNLSSLSSFNSKT TCLKFRSRNLTKPVKCSVSQATQPATEKKSQLMRRRDIRNIAIVAHVDHGKTTLVDAM LKQSKVFRDNQFVQERVMDSNDLERERGITILSKNTSITYKDTKINIIDTPGHSDFGG EVERILNMVDGVLLVVDSVEGPMPQTRFVLKKALEFGLAVVVVVNKIDRPSARPDFVI NSTFELFIELNATDEQCDFQVIYASGIKGKAGLSPDNLAEDLGPLFESIIRCIPGPRI DKDGALQMLATNIEYDEHKGRIAIGRLHAGVLQRGMEVRVCTSEDSCRYARISELFVY EKFSRIPAERVEAGDICAVCGIEDIQIGETIADKTSGKPLPAIKVEEPTVKMAFSINT SPFVGREGKYVTSRNLRDRLYRELERNLAMRVEDGETADTFIVSGRGTLHITILIENM RREGYEFMVGPPKVINKKIDDKLLEPYEIATVEVPEEHMGAVVELLGKRRGQMIDMQG VGSEGTTFLKYKIPTRGLLGLRNAILTASRGTAILNTIFDSYGPWAGDIITRDQGSLV AFEDGSSSSYALASSQERGQMFIGPGMEVYKGQIVGIHQRPGDLSLNVCKKKAATNIR SNKEQTAVVLDTPLDYSLDDCIEYIQEDELVEVTPSSIRMCKNPKFAAAKKSR" CDS complement(join(28110979..28111118,28112130..28112325, 28112698..28112863,28113396..28113490,28114108..28114192, 28114262..28114413,28114764..28114880,28115020..28115154, 28115441..28115530,28116301..28116474,28116833..28117009, 28117897..28118100,28118777..28118794)) /locus_tag="TCM_024725" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG003535t1" /codon_start=1 /product="Elongation factor family protein isoform 4" /protein_id="EOY09301.1" /db_xref="Phytozome:GSVIVT01033307001" /db_xref="TAIR:AT5G13650.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K409" /translation="MLKQSKVFRDNQFVQERVMDSNDLERERGITILSKNTSITYKDT KINIIDTPGHSDFGGEVERILNMVDGVLLVVDSVEGPMPQTRFVLKKALEFGLAVVVV VNKIDRPSARPDFVINSTFELFIELNATDEQLYVFGMQCDFQVIYASGIKGKAGLSPD NLAEDLGPLFESIIRCIPGPRIDKDGALQMLATNIEYDEHKGRIAIGRLHAGVLQRGM EVRVCTSEDSCRYARISELFVYEKFSRIPAERVEAGDICAVCGIEDIQIGETIADKTS GKPLPAIKVEEPTVKMAFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVEDGE TADTFIVSGRGTLHITILIENMRREGYEFMVGPPKVINKKIDDKLLEPYEIATVEVPE EHMGAVVELLGKRRGQMIDMQGVGSEGTTFLKYKIPTRGLLGLRNAILTASRGTAILN TIFDSYGPWAGDIITRDQGSLVAFEDGSSSSYALASSQERGQMFIGPGMEVYKGQIVG IHQRPGDLSLNVCKKKAATNIRSNKEQTVVLDTPLDYSLDDCIEYIQEDELVEVTPSS IRMCKNPKFAAAKKSR" mRNA complement(join(<28111045..28111118,28112130..28112325, 28112698..28112863,28113396..28113490,28114108..28114192, 28114262..28114413,28114764..28114880,28115020..28115154, 28115441..28115530,28116301..28116453,28116833..28117009, 28118777..28118886,28118973..>28119193)) /locus_tag="TCM_024725" /product="Elongation factor family protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033307001" /inference="similar to AA sequence:Phytozome:GSVIVT01033307001" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1262t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6193t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1259t1" mRNA complement(join(<28111045..28111118,28112130..28112325, 28112698..28112863,28113396..28113490,28114108..28114192, 28114262..28114413,28114764..28114880,28115020..28115154, 28115441..28115530,28116301..28116474,28116833..28117009, 28117897..28118100,28118777..28118886, 28118973..>28119193)) /locus_tag="TCM_024725" /product="Elongation factor family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033307001" /inference="similar to AA sequence:Phytozome:GSVIVT01033307001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1269t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6193t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1259t1" CDS complement(join(<28111045..28111118,28112130..28112325, 28112698..28112863,28113396..28113490,28114108..28114192, 28114262..28114413,28114764..28114880,28115020..28115154, 28115441..28115530,28116301..28116453,28116833..28117009, 28118777..28118886,28118973..>28119192)) /locus_tag="TCM_024725" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Elongation factor family protein isoform 5" /protein_id="EOY09302.1" /db_xref="Phytozome:GSVIVT01033307001" /db_xref="TAIR:AT5G13650.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K409" /translation="NREMEMAISFHNSYLKAPSINPNPKLPLPKQLFGLNLSSLSSFN SKTTCLKFRSRNLTKPVKCSVSQATQPATEKKSQLMRRRDIRNIAIVAHVDHGKTTLV DAMLKQSKVDSVEGPMPQTRFVLKKALEFGLAVVVVVNKIDRPSARPDFVINSTFELF IELNATDEQCDFQVIYASGIKGKAGLSPDNLAEDLGPLFESIIRCIPGPRIDKDGALQ MLATNIEYDEHKGRIAIGRLHAGVLQRGMEVRVCTSEDSCRYARISELFVYEKFSRIP AERVEAGDICAVCGIEDIQIGETIADKTSGKPLPAIKVEEPTVKMAFSINTSPFVGRE GKYVTSRNLRDRLYRELERNLAMRVEDGETADTFIVSGRGTLHITILIENMRREGYEF MVGPPKVINKKIDDKLLEPYEIATVEVPEEHMGAVVELLGKRRGQMIDMQGVGSEGTT FLKYKIPTRGLLGLRNAILTASRGTAILNTIFDSYGPWAGDIITRDQGSLVAFEDGSS SSYALASSQERGQMFIGPGMEVYKGQIVGIHQRPGDLSLNVCKKKAATNIRSNKEQTV VLDTPLDYSLDDCIEYIQEDELVE" CDS complement(join(<28111045..28111118,28112130..28112325, 28112698..28112863,28113396..28113490,28114108..28114192, 28114262..28114413,28114764..28114880,28115020..28115154, 28115441..28115530,28116301..28116474,28116833..28117009, 28117897..28118100,28118777..28118886, 28118973..>28119192)) /locus_tag="TCM_024725" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Elongation factor family protein isoform 3" /protein_id="EOY09300.1" /db_xref="Phytozome:GSVIVT01033307001" /db_xref="TAIR:AT5G13650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K409" /translation="NREMEMAISFHNSYLKAPSINPNPKLPLPKQLFGLNLSSLSSFN SKTTCLKFRSRNLTKPVKCSVSQATQPATEKKSQLMRRRDIRNIAIVAHVDHGKTTLV DAMLKQSKVFRDNQFVQERVMDSNDLERERGITILSKNTSITYKDTKINIIDTPGHSD FGGEVERILNMVDGVLLVVDSVEGPMPQTRFVLKKALEFGLAVVVVVNKIDRPSARPD FVINSTFELFIELNATDEQLYVFGMQCDFQVIYASGIKGKAGLSPDNLAEDLGPLFES IIRCIPGPRIDKDGALQMLATNIEYDEHKGRIAIGRLHAGVLQRGMEVRVCTSEDSCR YARISELFVYEKFSRIPAERVEAGDICAVCGIEDIQIGETIADKTSGKPLPAIKVEEP TVKMAFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVEDGETADTFIVSGRGT LHITILIENMRREGYEFMVGPPKVINKKIDDKLLEPYEIATVEVPEEHMGAVVELLGK RRGQMIDMQGVGSEGTTFLKYKIPTRGLLGLRNAILTASRGTAILNTIFDSYGPWAGD IITRDQGSLVAFEDGSSSSYALASSQERGQMFIGPGMEVYKGQIVGIHQRPGDLSLNV CKKKAATNIRSNKEQTVVLDTPLDYSLDDCIEYIQEDELVE" gene 28119434..28122406 /locus_tag="TCM_024726" /note="dbxref CacaoGD:Thecc1EG024726" mRNA 28119434..28122406 /locus_tag="TCM_024726" /product="Tetratricopeptide repeat superfamily protein" /inference="alignment:exonerate- protein:2:ricco:29761.m000423" /inference="similar to AA sequence:ricco:29761.m000423" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1729t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc6647t1" CDS 28119489..28121765 /locus_tag="TCM_024726" /note="dbxref ricco:29761.m000423" /codon_start=1 /product="Tetratricopeptide repeat superfamily protein" /protein_id="EOY09303.1" /db_xref="TAIR:AT2G33680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HL06" /translation="MEALFGATAFLPPSKPQHPLLSVKTKPPDKAMYPTLNTVQSCSV SSISNNKELLLSEDWPHLLKLSIGSGNFLLGQAIHAFLVKSNCLYDVFQGNNLINFYA KFKELDGAQKMFDEMPIRNTITWTTLMKGYVDNEDFQSVFRIARDMYFYGEKFNEHTC SVILQACAMVEDLIRGEQIHGLVIKSGTDENVCVGTSLISMYSMNGFLSEAGKVFDNI GLKDVQCLNYMIFEYGKAGCMDKAFWVFVDMLSSGLEPTDYTFTNIISTCSENVGIEE GRQLHGLAVKYGVVNVTSLGNAVITMYGKLGMIEDAERMFGFLSERNLISWTALISGY VRSGFGEKAIDMFLELLDQGICCDSQCLVIVLDGCSECKNLDLGVQLHGFAIKVGYLC DVNVVTALVDMYAKCENLNSAKTVFDGFSSKNVALFNAILAGFLKTDGDDDDEYAMVL FRQLRLGGMKPDLVTFSRLLSLSANQAFLVNGKSLHAYTIKMGFEAHLAVSNALITMY AKCGSVGDACQMFNGMNGHDLVSWNAMVSAYSTHGQGKKALMLFEEMKREGFTPDEIT ILALLQACSYTGLWDAGLCLFNEMESKYGIRPAIEHFACMVHLLGRAGRLPEAMHFIN SSPFPNSPLLWRTLVNVSKLQGNLDFGMLASEKLLDLSPEEAGSYILVSNMYAGSGML DEAAKVRTAMKDFKLRKEAGCSWIEINNKFHCFVATGKDHPESREIYAKLDLLMDEMK WNNCNTTDAHLIEETLLM" gene complement(28123974..28126199) /locus_tag="TCM_024727" /note="dbxref CacaoGD:Thecc1EG024727" mRNA complement(join(28123974..28124737,28125477..28126199)) /locus_tag="TCM_024727" /product="Remorin family protein" /inference="alignment:exonerate-protein:2:frave:gene25223" /inference="similar to AA sequence:Phytozome:POPTR_0006s05180.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g10893t00001" CDS complement(join(28124546..28124737,28125477..28126109)) /locus_tag="TCM_024727" /codon_start=1 /product="Remorin family protein" /protein_id="EOY09304.1" /db_xref="Phytozome:POPTR_0006s05180.1" /db_xref="TAIR:AT3G57540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7LHZ1" /translation="MLTLQGAITNGENDQTQDHNRDHHDHDDDEHIRDIHALTPPHPP AVNRGRWETGSHRSSSLSVSSEAGSTENFTTMSREFNALVLAGSSIENNDSDSINTLN NHNHLTRIGEEEVPEETNPLAIVPDNNPFDQGPEQRRAESGGSLAASSSGHAEVSVLR VKKEEVESKISAWQNAKVAKINNRFKREDAIINGWESEQVQKATSWMKKVERKLEEKR ARALEKMQNDVAKAHRKAEERKASAEAKRGTKVARVLEIANLMRAVGRAPAKRSFF" mobile_element 28128902..28129500 /note="source:scaffold_5_CACTA_0610 6069 6671" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28129829..28130762 /note="source:scaffold_6_CACTA_0710 138 1087" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28130773..28131168 /note="source:INTACT556_F252_scaffold_2-int 1 398" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28130899..28131263) /note="source:CACAO_M_E34142_F67_scaffold_4 6003 6351" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(28132137..28133325) /note="source:INTACT1391F_F387_scaffold_8-int 11703 12908" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28133325..28136313 /note="source:scaffold_6_CACTA_0710 1090 4050" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(28136314..28136577) /note="source:INTACT705_F74_scaffold_10-int 2328 2593" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28136579..28136964) /note="source:CACAO_M_E85127_F17_scaffold_10 1 385" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28136967..28139274 /note="source:CACAO_M_S_E84654_F74_scaffold_6 2 2573" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28139275..28140036 /note="source:scaffold_5_CACTA_0610 6116 6671" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28142932..28143248 /note="source:scaffold_1_CACTA_0008 7086 7379" /mobile_element_type="transposon:TIR/CACTA" gene 28152024..28155249 /locus_tag="TCM_024729" /note="dbxref CacaoGD:Thecc1EG024729" mRNA join(28152024..28152428,28154442..28155249) /locus_tag="TCM_024729" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.44 coverage" mobile_element 28152173..28152257 /note="source:scaffold_4_CACTA_0505 18594 18677" /mobile_element_type="transposon:TIR/CACTA" CDS join(28152411..28152428,28154442..28154672) /locus_tag="TCM_024729" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09305.1" /translation="MVLSRKGRKRRSNLDRVKFGALLPNESSQGSCTCLACRFHIAML CIHDFHTKFATSSFLQSQRRIRSIPQYKLNSRILSFLR" mobile_element 28153778..28154245 /note="source:scaffold_1_CACTA_0008 14064 14501" /mobile_element_type="transposon:TIR/CACTA" gene 28155430..28159794 /locus_tag="TCM_024730" /note="dbxref CacaoGD:Thecc1EG024730" mRNA join(28155430..28155622,28156112..28156146, 28156328..28156435,28156575..28156651,28156746..28156875, 28157039..28157401,28157961..28158082,28158256..28158391, 28158495..28158540,28158623..28158728,28158835..28159747) /locus_tag="TCM_024730" /product="Guanylate kinase isoform 2" /inference="alignment:exonerate- protein:2:ricco:29761.m000433" /inference="similar to AA sequence:Phytozome:POPTR_0006s05200.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc403t6; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14107t1" mRNA join(28155430..28155622,28156112..28156146, 28156328..28156435,28156575..28156651,28156746..28156875, 28157039..28157401,28157961..28158082,28158256..28158391, 28158495..28158540,28158623..28158711,28158835..28159747) /locus_tag="TCM_024730" /product="Guanylate kinase isoform 3" /inference="alignment:exonerate- protein:2:ricco:29761.m000433" /inference="similar to AA sequence:Phytozome:POPTR_0006s05200.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc403t7; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14107t1" mRNA join(28155599..28155622,28156112..28156146, 28156328..28156435,28156575..28156651,28156746..28156875, 28157039..28157401,28157961..28158082,28158256..28158391, 28158495..28158540,28158623..28158728,28158832..28159794) /locus_tag="TCM_024730" /product="Guanylate kinase isoform 1" /inference="alignment:exonerate- protein:2:ricco:29761.m000433" /inference="similar to AA sequence:Phytozome:POPTR_0006s05200.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14107t1" mRNA join(28155724..28155920,28156022..28156146, 28156328..28156435,28156575..28156651,28156746..28156875, 28157039..28157401,28157961..28158082,28158256..28158391, 28158495..28158540,28158623..28158728,28158832..28159568) /locus_tag="TCM_024730" /product="Guanylate kinase isoform 1" /inference="alignment:exonerate- protein:2:ricco:29761.m000433" /inference="similar to AA sequence:Phytozome:POPTR_0006s05200.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc386t6_C2; alternateUTRof:Thecc1EG024730t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14107t1" CDS join(28156144..28156146,28156328..28156435, 28156575..28156651,28156746..28156875,28157039..28157401, 28157961..28158082,28158256..28158391,28158495..28158540, 28158623..28158728,28158832..28158949) /locus_tag="TCM_024730" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Guanylate kinase isoform 1" /protein_id="EOY09306.1" /db_xref="Phytozome:POPTR_0006s05200.1" /db_xref="TAIR:AT3G57550.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9II63" /translation="MGEVPAFCVDNLQNGFSNGFNLKSEGCETSTNVGDKTFVIGGLN DGSTSSIGVRIYEKSTGKWVIPTVLGTKPKPCKGHSAVLLSEDQILIITRGSTPDDCI WFLEVNTKYVKEQKKVLGTEVVAWSKGVRGDAEKPVVISGPSGVGKGTLINMLMKEFP SMCGFSVSHTTRAPRDKEKNGVHYHFTERSVMEKDIKYGKFLEFASVHGNLYGTSIEA VEAVADSGKRCILDIDVQGARSVRASSLDAIFIFICPPSMKELEERLRARGTETEEQI LKRLRNAEAEIEQGKSSGIFDHILYNDNLEECYKNLKGLLGLDGIAPTNYKPSPRGID LPLDHSVLKIDNKILINCETRESGNGSKNLIALDVSLLKGGAPGRTRGLNVYAIDSFS DGFDGIHKLS" CDS join(28156144..28156146,28156328..28156435, 28156575..28156651,28156746..28156875,28157039..28157401, 28157961..28158082,28158256..28158391,28158495..28158540, 28158623..28158728,28158832..28158949) /locus_tag="TCM_024730" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Guanylate kinase isoform 1" /protein_id="EOY09309.1" /db_xref="Phytozome:POPTR_0006s05200.1" /db_xref="TAIR:AT3G57550.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9II63" /translation="MGEVPAFCVDNLQNGFSNGFNLKSEGCETSTNVGDKTFVIGGLN DGSTSSIGVRIYEKSTGKWVIPTVLGTKPKPCKGHSAVLLSEDQILIITRGSTPDDCI WFLEVNTKYVKEQKKVLGTEVVAWSKGVRGDAEKPVVISGPSGVGKGTLINMLMKEFP SMCGFSVSHTTRAPRDKEKNGVHYHFTERSVMEKDIKYGKFLEFASVHGNLYGTSIEA VEAVADSGKRCILDIDVQGARSVRASSLDAIFIFICPPSMKELEERLRARGTETEEQI LKRLRNAEAEIEQGKSSGIFDHILYNDNLEECYKNLKGLLGLDGIAPTNYKPSPRGID LPLDHSVLKIDNKILINCETRESGNGSKNLIALDVSLLKGGAPGRTRGLNVYAIDSFS DGFDGIHKLS" CDS join(28156144..28156146,28156328..28156435, 28156575..28156651,28156746..28156875,28157039..28157401, 28157961..28158082,28158256..28158391,28158495..28158540, 28158623..28158728,28158835..28158949) /locus_tag="TCM_024730" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Guanylate kinase isoform 2" /protein_id="EOY09307.1" /db_xref="Phytozome:POPTR_0006s05200.1" /db_xref="TAIR:AT3G57550.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9II63" /translation="MGEVPAFCVDNLQNGFSNGFNLKSEGCETSTNVGDKTFVIGGLN DGSTSSIGVRIYEKSTGKWVIPTVLGTKPKPCKGHSAVLLSEDQILIITRGSTPDDCI WFLEVNTKYVKEQKKVLGTEVVAWSKGVRGDAEKPVVISGPSGVGKGTLINMLMKEFP SMCGFSVSHTTRAPRDKEKNGVHYHFTERSVMEKDIKYGKFLEFASVHGNLYGTSIEA VEAVADSGKRCILDIDVQGARSVRASSLDAIFIFICPPSMKELEERLRARGTETEEQI LKRLRNAEAEIEQGKSSGIFDHILYNDNLEECYKNLKGLLGLDGIAPTNYKPSPRGID LPLDHSVLKIDNKILINCETRESGNGSKNFALDVSLLKGGAPGRTRGLNVYAIDSFSD GFDGIHKLS" CDS join(28156144..28156146,28156328..28156435, 28156575..28156651,28156746..28156875,28157039..28157401, 28157961..28158082,28158256..28158391,28158495..28158540, 28158623..28158711,28158835..28158858) /locus_tag="TCM_024730" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Guanylate kinase isoform 3" /protein_id="EOY09308.1" /db_xref="Phytozome:POPTR_0006s05200.1" /db_xref="TAIR:AT3G57550.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9II63" /translation="MGEVPAFCVDNLQNGFSNGFNLKSEGCETSTNVGDKTFVIGGLN DGSTSSIGVRIYEKSTGKWVIPTVLGTKPKPCKGHSAVLLSEDQILIITRGSTPDDCI WFLEVNTKYVKEQKKVLGTEVVAWSKGVRGDAEKPVVISGPSGVGKGTLINMLMKEFP SMCGFSVSHTTRAPRDKEKNGVHYHFTERSVMEKDIKYGKFLEFASVHGNLYGTSIEA VEAVADSGKRCILDIDVQGARSVRASSLDAIFIFICPPSMKELEERLRARGTETEEQI LKRLRNAEAEIEQGKSSGIFDHILYNDNLEECYKNLKGLLGLDGIAPTNYKPSPRGID LPLDHSVLKIDNKILINCETRESGCTGCVLA" mRNA join(<28156412..28156420,28156575..28156651, 28156746..28156875,28157039..28157401,28157961..28158082, 28158256..28158391,28158495..28158540,28158623..28158738, 28158832..28159747) /locus_tag="TCM_024730" /product="Guanylate kinase isoform 5" /inference="alignment:exonerate- protein:2:ricco:29761.m000433" /inference="similar to AA sequence:Phytozome:POPTR_0006s05200.1" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc403t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14107t1" CDS join(<28156412..28156420,28156575..28156651, 28156746..28156875,28157039..28157401,28157961..28158082, 28158256..28158391,28158495..28158540,28158623..28158732) /locus_tag="TCM_024730" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Guanylate kinase isoform 5" /protein_id="EOY09310.1" /db_xref="Phytozome:POPTR_0006s05200.1" /db_xref="TAIR:AT3G57550.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9II63" /translation="STNFVIGGLNDGSTSSIGVRIYEKSTGKWVIPTVLGTKPKPCKG HSAVLLSEDQILIITRGSTPDDCIWFLEVNTKYVKEQKKVLGTEVVAWSKGVRGDAEK PVVISGPSGVGKGTLINMLMKEFPSMCGFSVSHTTRAPRDKEKNGVHYHFTERSVMEK DIKYGKFLEFASVHGNLYGTSIEAVEAVADSGKRCILDIDVQGARSVRASSLDAIFIF ICPPSMKELEERLRARGTETEEQILKRLRNAEAEIEQGKSSGIFDHILYNDNLEECYK NLKGLLGLDGIAPTNYKPSPRGIDLPLDHSVLKIDNKILINCETRESGNGSKNL" gene complement(28159920..28161494) /locus_tag="TCM_024731" /note="dbxref CacaoGD:Thecc1EG024731" mRNA complement(28159920..28161494) /locus_tag="TCM_024731" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.32 coverage" CDS complement(28160896..28161201) /locus_tag="TCM_024731" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09311.1" /translation="MGKAPATTNKSLEKDLKQADPCFAVEGDGTYLLILNKMGPPQHQ LALSGQMSGSLHLQKFGKIFISFRLVVVDCDRLNEASQYVQPPNPLFFVTYVDKHLL" gene complement(28162730..28172405) /locus_tag="TCM_024732" /note="dbxref CacaoGD:Thecc1EG024732" mRNA complement(join(28162730..28163649,28165726..28165890, 28167625..28167696,28168050..28168165,28168967..28169271, 28172325..28172405)) /locus_tag="TCM_024732" /product="Nuclear factor Y, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033313001" /inference="similar to AA sequence:Phytozome:GSVIVT01033313001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaL_g09008t00001" CDS complement(join(28163188..28163649,28165726..28165890, 28167625..28167696,28168050..28168165,28168967..28169237)) /locus_tag="TCM_024732" /codon_start=1 /product="Nuclear factor Y, putative" /protein_id="EOY09312.1" /db_xref="Phytozome:GSVIVT01033313001" /db_xref="TAIR:AT5G12840.4" /db_xref="UniProtKB/TrEMBL:UniRef50_D7THZ0" /translation="MHQKLEGKNHPEPNANNNKPYTVRSQPWWCSTQQDASSTDVLGE SRTNLAPGKHPNGGLGTQTSESQHGELTDQKICASKGMWLTVLPHPDGKCGDEQPHLQ HAVPFMPPTMGEYIAPRTRLELVGHSIACPSYPYADPYYGGAMPPYGPQSLVHPHCLG VHPARMALPLEMAEEPVYVNAKQYHGILRRRQSRAKAELEKKLIKVRKPYLHESRHLH AMRRARGCGGRFLNTKKLDSDASNATPDKGSDTSSNLSSHPTNSLSGKSISSHMSQDV NSSGGHQEVTESELPGTDMQQAFSNSNGKIYINGNGNVCYSHHQGFHFSTSRSLSDKM MEEGDCPRQQHERIVANGVPHRALTIK" gene complement(28171745..28173766) /locus_tag="TCM_024733" /note="dbxref CacaoGD:Thecc1EG024733" mRNA complement(join(28171745..28171947,28172118..28172396, 28173081..28173766)) /locus_tag="TCM_024733" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.25 coverage" CDS complement(28173235..28173639) /locus_tag="TCM_024733" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09313.1" /translation="MSCPRGCPPLVFLPKASTHLPRGWPPLVFRAAYNSLLIVSRDTW ALTVAVTEIRACRLFLWGRGPPFCYLTPRQTNGTGPLTWNPVLLGWTTWRLTGVRGSH VSTLSDCGRWWDGWTRLGCPIQWQNMQIFSNL" mobile_element complement(28174847..28175136) /note="source:CACAO_M_E4753_F17_scaffold_2 7529 7827" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28177010..28177659 /note="source:INTACT687_F13_scaffold_3-int 1298 2053" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28179871..28180438 /note="source:CACAO_on_E732_scaffold_9 1046 1615" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(28185239..28186066) /note="source:scaffold_2_CACTA_0277 4017 4865" /mobile_element_type="transposon:TIR/CACTA" gene complement(28187711..28190272) /locus_tag="TCM_024735" /note="dbxref CacaoGD:Thecc1EG024735" mRNA complement(join(28187711..28188563,28188856..28190272)) /locus_tag="TCM_024735" /product="Domain of Uncharacterized protein function (DUF23)" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s28030.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005969t1" /inference="similar to AA sequence:ricco:30170.m014246" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11166t00001" CDS complement(join(28188215..28188563,28188856..28190012)) /locus_tag="TCM_024735" /note="dbxref ricco:30170.m014246; paralog of Thecc1EG005969t1" /codon_start=1 /product="Domain of Uncharacterized protein function (DUF23)" /protein_id="EOY09314.1" /db_xref="TAIR:AT2G33570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22807" /translation="MRKEAAPSSAPSTAASFGKLFVCFETKPLVATLLALTLVMLLWN LPPYYQNLLSTTRPCSAPSLTSAAAATTSLLATNVSLPYTATPVAEKKYYSAPKAKPR DPNKRVFEAYGNAAALFVRMGAYRGGPTTFAVVGLASKPIHVFGRPWYKCEWISNNGS SYRAKAYKMLPDWGYGRVYTVLVVNCTFPFNPNQDNLGGKLMINAYYGESQRKYEKFT ALEEAPGSYNESKYHSPFQYEYLYCGSSLYGNLSADRMREWMAYHAWFFGPNSHFVFH DAGGVTPEVRAALDPWVRAGRATMQDIRDQAEFDGYYYNQFLVVNDCLHRYRHAANWT FFFDVDEYIYLPDGNTLESVLNEFSDYTQFTIEQNPMSSVLCLNNSSEQYSRQWGFEK LLFRESRTGIRRDRKYAIQAKNAYATGVHMSENVIGKTLHKTETKIRYYHYHNTITVH QELCREFLPLSAKNNVTWFNKLPYVYDDNMKKLANTIKEFERKTIGNGNLQ" mobile_element 28198372..28199639 /note="source:scaffold_5_CACTA_0584 7147 8299" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28199098..28200650 /note="source:CACAO_M_E3969_F127_scaffold_1 655 2160" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28200651..28200906) /note="source:CACAO_M_E5627_F4_scaffold_2 582 1622" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 28200907..28201664 /note="source:CACAO_M_S_E90022_F9_scaffold_8 13163 13913" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28204144..28204763) /note="source:INTACT1334F_F383_scaffold_8-int 2929 3557" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28204758..28205328 /note="source:CACAO_M_E14847_F106_scaffold_3 1403 1971" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 28205997..28206187 /note="source:CACAO_M_S_E52027_F3_scaffold_5 7938 8161" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28206243..28206456 /note="source:CACAO_M_S_E52027_F3_scaffold_5 215 420" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28207595..28214908) /note="source:scaffold_5_CACTA_0613 3590 10856" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(28214888..28215187) /note="source:CACAO_Mutator_E206_scaffold_1 5668 5964" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(28215203..28215710) /note="source:scaffold_6_CACTA_0712 3281 3790" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(28216722..28217027) /note="source:scaffold_6_CACTA_0712 2157 2502" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(28222664..28222910) /note="source:scaffold_5_CACTA_0607 9563 9828" /mobile_element_type="transposon:TIR/CACTA" gene 28225637..28228178 /locus_tag="TCM_024739" /note="dbxref CacaoGD:Thecc1EG024739" mRNA join(28225637..28226024,28227410..28228165) /locus_tag="TCM_024739" /product="Cysteine/Histidine-rich C1 domain family protein, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene29148" /inference="similar to AA sequence:Phytozome:Glyma07g19730.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6209t1" mRNA join(28225649..28226024,28227410..28227869, 28228025..28228178) /locus_tag="TCM_024739" /product="Cysteine/Histidine-rich C1 domain family protein, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene29148" /inference="similar to AA sequence:Phytozome:Glyma07g19730.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc3736t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6209t1" CDS join(28225676..28226024,28227410..28227869, 28228025..28228028) /locus_tag="TCM_024739" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein, putative isoform 2" /protein_id="EOY09316.1" /db_xref="Phytozome:Glyma07g19730.1" /db_xref="TAIR:AT1G20990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H5Y3" /translation="MMMSSKPLKKTNSCPLKYKAPSMDQPPPHQVAFPTSPQAPQLGE EIFYFAHPQHPISQTNLPDLFTCAACKEYGAGERFTCSDCDYQLHDFCALAPPALKRH PIHPVHKIIFFPKPVKSGILKSRCDVCAKTTKGCVFKCTVCSFQMHPCCAMLSTEINI PVHPHTLRLLPVPQYTSNGDPGFVCGECNKRRSGRVYHCTVCDYHLHAVCAKNMVNGL QANGFKGMEKSSMLGAAAKVASRVMIDFIGGLIEGIGEGVGQVLIQSAARGS" CDS join(28225676..28226024,28227410..28227900) /locus_tag="TCM_024739" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein, putative isoform 1" /protein_id="EOY09315.1" /db_xref="Phytozome:Glyma07g19730.1" /db_xref="TAIR:AT1G20990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H5Y3" /translation="MMMSSKPLKKTNSCPLKYKAPSMDQPPPHQVAFPTSPQAPQLGE EIFYFAHPQHPISQTNLPDLFTCAACKEYGAGERFTCSDCDYQLHDFCALAPPALKRH PIHPVHKIIFFPKPVKSGILKSRCDVCAKTTKGCVFKCTVCSFQMHPCCAMLSTEINI PVHPHTLRLLPVPQYTSNGDPGFVCGECNKRRSGRVYHCTVCDYHLHAVCAKNMVNGL QANGFKGMEKSSMLGAAAKVASRVMIDFIGGLIEGIGEGVGQVLIQSAARGRCHTRSD RTT" mobile_element 28232276..28233286 /note="source:scaffold_5_CACTA_0608 1 1011" /mobile_element_type="transposon:TIR/CACTA" gene complement(28232891..28237452) /locus_tag="TCM_024740" /note="dbxref CacaoGD:Thecc1EG024740" mRNA complement(join(28232891..28233246,28233398..28233656, 28235902..28236527,28237300..28237452)) /locus_tag="TCM_024740" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s13880.1.2" /inference="similar to AA sequence:Phytozome:POPTR_0011s09120.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.35 coverage" CDS complement(join(28233049..28233246,28233398..28233656, 28235902..28235939)) /locus_tag="TCM_024740" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09317.1" /db_xref="Phytozome:POPTR_0011s09120.1" /translation="MGRKEGGEIIKSQSDFTLTDGAQKGNKPSNVFNASSYIRVLQAI NEKFNVQCKTNHVENHLRIVKNTSNTVQNVLAKSGFGWDDNLKMITADRQVYEDEAHL KHEPFINKKIDMFNEMTLVVGKDMATESFAKSFADIDFQTNTEANAMLVDLDKDVDEE MRGR" mobile_element 28233387..28244266 /note="source:scaffold_5_CACTA_0608 1012 11891" /mobile_element_type="transposon:TIR/CACTA" gene complement(28242877..28243528) /locus_tag="TCM_024741" /note="dbxref CacaoGD:Thecc1EG024741" mRNA complement(28242877..28243528) /locus_tag="TCM_024741" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s05220.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.45 coverage" CDS complement(28243091..28243465) /locus_tag="TCM_024741" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09318.1" /translation="MAPTATRRRSCYRRREVERDSSLESSMELPCSHIGSNSSSNDSS CRNSTTADKEDINRVEVLQTGCSTPKGQRFRIPDTLTCPPAPMKPRVAPKLLSRRSSA ITFFAPPDIDLFFFLAFQNVSA" gene complement(28245907..28249658) /locus_tag="TCM_024742" /note="dbxref CacaoGD:Thecc1EG024742" mRNA complement(join(28245907..28248698,28249105..28249658)) /locus_tag="TCM_024742" /product="Curculin-like lectin family protein / PAN domain-containing protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s05420.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05420.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6232t1" CDS complement(28246387..28248687) /locus_tag="TCM_024742" /codon_start=1 /product="Curculin-like lectin family protein / PAN domain-containing protein, putative" /protein_id="EOY09319.1" /db_xref="Phytozome:POPTR_0016s05420.1" /db_xref="TAIR:AT2G41890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P93756" /translation="MLEQERFLYGSALLLCISLGSLLFGVVASEITLGSKLSVEEDNS WVSSNGDFAIGFYNHPDRPSQFGIGIRFNSKSIPVDKRTVVWVAGGDVSVSNNSYFQL QKNGELVLFDASQSQEQWTSKTSQLSVASAFLRDDGNLVLLNEKKDIVWQSFDYPTDT LLPGQRFYAFSTLRAAGQNDVSSLYTLYMNVSGQLQLRWESSIIYWSSGRPSHSNLTA VLTSSGSLQLVAPNLGPIWSVFGEDHDDTVRFRFLRLDVDGNLRIFSWVEVSQTWRSV WQAVENQCTVFATCYQQGICVFNASGSPVCTCPFHHTGQSNSKCLFSSQHDCKSGSIM VEQANMFLYGYYPVNDSISITSINQCKSMCLNDSSCTSVTFTNDGSAKCRMMKTPYVS GYSVPSLSSISFVKSCSDPIAADPIIPLKSPPQAQKESYKICIPCLVGAASGTFVVFV VIQLAMGFYLHKRRNSYRRLASLAYSTPGSKCLIMLSFTEIKDLTGNFNHQIGPKMFK GALPNNQLVTVKELEATTEARKFRAAVSKIGSIYHKGLVKLEGYCCELDHRYLVYEFP KNGSVEKYIEDSTLAERLTWRKRMEICLSVGRAIFYLHTECREFLCHGNLKCENVVLD ENFEAKVNEFGFRMLYGEASSHRASAEKDVEEFGKIVMTLVSGIKEVNDVVGWAYKEW LEGHPENVVDKRLEGEVDNEELERALRIAFWCLQTDERVKPSMGEVVKVLEGTLPVDP PPPPFTCWRSPREEEDSSELGSESET" mobile_element complement(28255815..28256418) /note="source:scaffold_2_CACTA_0239 8776 9350" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(28257335..28260654) /note="source:scaffold_2_CACTA_0239 4608 7933" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(28265992..28266560) /note="source:scaffold_1_CACTA_0009 13257 13828" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28266259..28268844 /note="source:CACAO_M_E33977_F20_scaffold_4 5392 8020" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28268845..28271916) /note="source:INTACT904F_F49_scaffold_6-int 5721 8825" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28271917..28275744 /note="source:scaffold_9_CACTA_0922 142 3979" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(28273745..28276406) /note="source:CACAO_Mutator_E1888_scaffold_9 2441 5134" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(28276398..28278649) /note="source:CACAO_Mutator_E1410_scaffold_6 40 3002" /mobile_element_type="transposon:TIR/Mutator" gene complement(28277707..28279862) /locus_tag="TCM_024746" /note="dbxref CacaoGD:Thecc1EG024746" mRNA complement(join(28277707..28278245,28279397..28279862)) /locus_tag="TCM_024746" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002293t1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.47 coverage" CDS complement(join(28277823..28278245,28279397..28279480)) /locus_tag="TCM_024746" /note="paralog of Thecc1EG002293t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09320.1" /translation="MLDGCRRAGFRVRETSCWECVIRHRSKLIQRRQYEDLDSLLFVP REKLAFNVAINTHCKRSQLHYITKTLQQKGKYDPVKHTCFGMLLDFYPQGYFYVGLLH SIMIRRITKRQSMDHELWFAIGKSKARLSKQEFCLITGLKSGPMPDVFRRLYEVATDG IDARYWNW" mobile_element 28278324..28279927 /note="source:CACAO_M_E33977_F20_scaffold_4 14946 16551" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28281172..28281817) /note="source:CACAO_M_E4753_F17_scaffold_2 7191 7825" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28281179..28281243) /note="source:INTACT135F_F90_scaffold_2-int 13717 13996" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 28281244..28282040 /note="source:scaffold_2_CACTA_0244 12398 13246" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28282041..28282244 /note="source:CACAO_Helitron_E81_scaffold_3 1224 1425" /mobile_element_type="transposon:Helitron" mobile_element 28282245..28282378 /note="source:scaffold_2_CACTA_0244 13247 13390" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(28282379..28282551) /note="source:INTACT135F_F90_scaffold_2-int 12954 13716" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 28282590..28283756 /note="source:CACAO_Mariner_E180_scaffold_6 5033 6247" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(28283233..28284212) /note="source:CACAO_Mariner_E38_scaffold_2 4501 5354" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene 28288391..28292765 /locus_tag="TCM_024747" /note="dbxref CacaoGD:Thecc1EG024747" mRNA join(28288391..28288857,28289922..28292151, 28292371..28292765) /locus_tag="TCM_024747" /product="C3HL domain class transcription factor isoform 1" /inference="alignment:exonerate- protein:2:ricco:27810.m000634" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005881t3" /inference="similar to AA sequence:ricco:27810.m000634" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc683t3_C1" mRNA join(28288596..28288857,28289922..28292237, 28292305..28292739) /locus_tag="TCM_024747" /product="C3HL domain class transcription factor isoform 1" /inference="alignment:exonerate- protein:2:ricco:27810.m000634" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005881t3" /inference="similar to AA sequence:ricco:27810.m000634" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc668t1; alternateUTRof:Thecc1EG024747t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc683t3_C1" mRNA join(28288828..28288857,28289888..28292237, 28292305..28292739) /locus_tag="TCM_024747" /product="C3HL domain class transcription factor isoform 1" /inference="alignment:exonerate- protein:2:ricco:27810.m000634" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005881t3" /inference="similar to AA sequence:ricco:27810.m000634" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc668t4; alternateUTRof:Thecc1EG024747t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc683t3_C1" CDS 28289945..28292128 /locus_tag="TCM_024747" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:27810.m000634; paralog of Thecc1EG005881t3" /codon_start=1 /product="C3HL domain class transcription factor isoform 1" /protein_id="EOY09321.1" /db_xref="TAIR:AT2G41900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D9ZIV2" /translation="MCCGSERLKQTPSPTTSNISFEDSRHPSVDMNHLTVETEDAFAS LLELAANNDVEGFKLSIERDPSGVDEVGLWYGRQKGSKQMVNEERTPLMVAATYGSID VIKLILSSSDADVNRVCGHDKSTALHCAASGGAVNAIDVVKLLLAAGADANMVDANGH LPVDVVVVPPKLQALKLTLEELLATESSVLERNLRVSTAVANSSSPPLSPSQENGSPS SGSDSPMKSKSTDAPISSASEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAY SHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHP AQYRTRLCKDGTNCARRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSGATAMDFAAAL SLLPGSPSSVSVMSPSPFTPPMSPSANGMSHSNVGWPQPNVPALHLPGSNLQSSRLRS SLNARDIPNEDFNLLPDFDVQQQQLINELSSLTQPSMSSNSLNRSGRLKTLTPSNLDD LFSAESSSPRYSDQALASAVFSPTHKSAVLNQFQQQQSMLSPINTNFSPKNIEHPLLQ ASLSGRMSPRNVEPISPMGSRVSMLAQREKQQQFRSLSSRELGSGSTAIVGSPVNSWS KWGSSNGKPDWAVNADELGKLRRSSSFELGNGEEPDLSWVQSLVKESPTEIKDKMAAP VSGVAPNVSSSEGSNLNTQIDPVDHAVLGAWLEQMQLDQLVAQQN" CDS 28289945..28292128 /locus_tag="TCM_024747" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:27810.m000634; paralog of Thecc1EG005881t3" /codon_start=1 /product="C3HL domain class transcription factor isoform 1" /protein_id="EOY09322.1" /db_xref="TAIR:AT2G41900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D9ZIV2" /translation="MCCGSERLKQTPSPTTSNISFEDSRHPSVDMNHLTVETEDAFAS LLELAANNDVEGFKLSIERDPSGVDEVGLWYGRQKGSKQMVNEERTPLMVAATYGSID VIKLILSSSDADVNRVCGHDKSTALHCAASGGAVNAIDVVKLLLAAGADANMVDANGH LPVDVVVVPPKLQALKLTLEELLATESSVLERNLRVSTAVANSSSPPLSPSQENGSPS SGSDSPMKSKSTDAPISSASEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAY SHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHP AQYRTRLCKDGTNCARRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSGATAMDFAAAL SLLPGSPSSVSVMSPSPFTPPMSPSANGMSHSNVGWPQPNVPALHLPGSNLQSSRLRS SLNARDIPNEDFNLLPDFDVQQQQLINELSSLTQPSMSSNSLNRSGRLKTLTPSNLDD LFSAESSSPRYSDQALASAVFSPTHKSAVLNQFQQQQSMLSPINTNFSPKNIEHPLLQ ASLSGRMSPRNVEPISPMGSRVSMLAQREKQQQFRSLSSRELGSGSTAIVGSPVNSWS KWGSSNGKPDWAVNADELGKLRRSSSFELGNGEEPDLSWVQSLVKESPTEIKDKMAAP VSGVAPNVSSSEGSNLNTQIDPVDHAVLGAWLEQMQLDQLVAQQN" CDS 28289945..28292128 /locus_tag="TCM_024747" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:27810.m000634; paralog of Thecc1EG005881t3" /codon_start=1 /product="C3HL domain class transcription factor isoform 1" /protein_id="EOY09323.1" /db_xref="TAIR:AT2G41900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D9ZIV2" /translation="MCCGSERLKQTPSPTTSNISFEDSRHPSVDMNHLTVETEDAFAS LLELAANNDVEGFKLSIERDPSGVDEVGLWYGRQKGSKQMVNEERTPLMVAATYGSID VIKLILSSSDADVNRVCGHDKSTALHCAASGGAVNAIDVVKLLLAAGADANMVDANGH LPVDVVVVPPKLQALKLTLEELLATESSVLERNLRVSTAVANSSSPPLSPSQENGSPS SGSDSPMKSKSTDAPISSASEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAY SHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHP AQYRTRLCKDGTNCARRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSGATAMDFAAAL SLLPGSPSSVSVMSPSPFTPPMSPSANGMSHSNVGWPQPNVPALHLPGSNLQSSRLRS SLNARDIPNEDFNLLPDFDVQQQQLINELSSLTQPSMSSNSLNRSGRLKTLTPSNLDD LFSAESSSPRYSDQALASAVFSPTHKSAVLNQFQQQQSMLSPINTNFSPKNIEHPLLQ ASLSGRMSPRNVEPISPMGSRVSMLAQREKQQQFRSLSSRELGSGSTAIVGSPVNSWS KWGSSNGKPDWAVNADELGKLRRSSSFELGNGEEPDLSWVQSLVKESPTEIKDKMAAP VSGVAPNVSSSEGSNLNTQIDPVDHAVLGAWLEQMQLDQLVAQQN" gene complement(28295370..28302081) /locus_tag="TCM_024749" /note="dbxref CacaoGD:Thecc1EG024749" mRNA complement(join(28295370..28295877,28296164..28296285, 28296462..28296557,28296657..28296773,28296850..28296921, 28297249..28297412,28297617..28297717,28297839..28297935, 28298392..28298527,28300189..28300367,28300557..28300766, 28301265..28301386,28301731..28302081)) /locus_tag="TCM_024749" /product="MATE efflux family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma02g31370.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040698t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05400.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2226t1" CDS complement(join(28295835..28295877,28296164..28296285, 28296462..28296557,28296657..28296773,28296850..28296921, 28297249..28297412,28297617..28297717,28297839..28297935, 28298392..28298527,28300189..28300367,28300557..28300766, 28301265..28301386,28301731..28301807)) /locus_tag="TCM_024749" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG040698t1" /codon_start=1 /product="MATE efflux family protein isoform 1" /protein_id="EOY09324.1" /db_xref="Phytozome:POPTR_0016s05400.1" /db_xref="TAIR:AT1G51340.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HNW5" /translation="MAVDAILRTWKNIGKLLLFVFFKDTRNVLKKDELGIEIAHIALP ATLALMADPIASLIDTAFIGRIGSVELAAVGVSVALFNQVSRITMFPLVSITTSFVAR EDATSRSSAEAEQDEILERGPVVDHEMEELMPLVESLSSFVACSNTKIAESKNERRHI PSASSALVIGSMLGIIQTFFLIFAAKPLLSYMGVNSESPMLKPAQQYLTIRSTGAPAL LLSLAVQGVFRGLKDTRTPLYAIIVGDSANVLMDPIFIFTFGLGVKGAAIAHVLSQYL IVLILFWRLVDKVDLLPPSFKELQFGQFLKNGFLLLVKVIAVTLCVTVAASLSARQGP TTMAAFQICLQIWLAASLLADGLAVAGQAILASAFAKKDYEKIIATASRVLQIGILLG LLLSFILVVGLQFASRLFTKDIAVLKLISLGIPFIAATQPINALAFVFDGVNYGASDF AYSAYSMVLVAVMSIFCLFILSSSHGYVGIWVALTIFMSLRVIAGLLRIGTGMGPWSF LSG" mRNA complement(join(28296166..28296296,28296462..28296557, 28296657..28296773,28296850..28296921,28297249..28297412, 28297617..28297717,28297839..28297935,28298392..28298527, 28300189..28300346,28300557..28300871,28301726..28301808)) /locus_tag="TCM_024749" /product="MATE efflux family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma02g31370.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040698t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05400.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc2017t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2226t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1262t3" CDS complement(join(28296267..28296296,28296462..28296557, 28296657..28296773,28296850..28296921,28297249..28297412, 28297617..28297717,28297839..28297935,28298392..28298527, 28300189..28300346,28300557..28300701)) /locus_tag="TCM_024749" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG040698t1" /codon_start=1 /product="MATE efflux family protein isoform 2" /protein_id="EOY09325.1" /db_xref="Phytozome:POPTR_0016s05400.1" /db_xref="TAIR:AT1G51340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HNW5" /translation="MFPLVSITTSFVAREDATSRSSAEAEQDEILERGPVVDHEMEEL MPLVACSNTKIAESKNERRHIPSASSALVIGSMLGIIQTFFLIFAAKPLLSYMGVNSE SPMLKPAQQYLTIRSTGAPALLLSLAVQGVFRGLKDTRTPLYAIIVGDSANVLMDPIF IFTFGLGVKGAAIAHVLSQYLIVLILFWRLVDKVDLLPPSFKELQFGQFLKNGFLLLV KVIAVTLCVTVAASLSARQGPTTMAAFQICLQIWLAASLLADGLAVAGQAILASAFAK KDYEKIIATASRVLQIGILLGLLLSFILVVGLQFASRLFTKDIAVLKLISLGIPFIAA TQPINALAFVFDGVNYGASDFAYSAYSMPFCRFWLQL" gene 28302901..28306515 /locus_tag="TCM_024750" /note="dbxref CacaoGD:Thecc1EG024750" mRNA join(28302901..28305078,28306280..28306515) /locus_tag="TCM_024750" /product="Mitochondrial RNAediting factor 1" /inference="alignment:exonerate-protein:2:frave:gene26916" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030473t3" /inference="similar to AA sequence:Phytozome:POPTR_0016s05390.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1826t2" CDS 28303135..28304922 /locus_tag="TCM_024750" /note="paralog of Thecc1EG030473t3" /codon_start=1 /product="Mitochondrial RNAediting factor 1" /protein_id="EOY09326.1" /db_xref="Phytozome:POPTR_0016s05390.1" /db_xref="TAIR:AT5G52630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LTF4" /translation="MATPFPELPQNPLNQNSFEQNYRNICNVLLSLTHSRSLPKGLQL HAHIIKAGLQTIPLISHHLLNFYSKTQLPLFSRQIFFETPIRSSTTWSSVISSFAQNE LPSLAIEFFREMLVNNIKPDDHIFPSATKSCATLGRFDLGQSIHCLILKTGYDMDVFV ASSLVDMYGKCGKINVARKVFDEMPERNVVSWTGMIYGYAQLGEYEEALMLFKQALYR RLDVNDFTFSSVLQVCANSTLLELGKQTHGLCFKTNYNLSSFVGSSLISLYSKCGVIE GAYLVFDEVCVRNLGMWNAMLIACAQHSHTERAFDLFKQMEGVGIKPNFITFLCVLYA CSHAGLVEKGQHYFELMKEYKIEPGDQHYASLVDLLGRAGKLQEALSIIREMPIQPTE SVWGAFLMGCRIHGNTELAAYAADRIFDLGPVSSGLHVLLSNAYAAAGRYEDAAKARK MLRDLGIKKETGLSWVEEGNKVHTFAAGDRSHAKTKEIYQKLEALGEEMEQVGYVADT RFVLREVDGEEKNQTIRYHSERLAVAFGLITFPPDRPIRVMKNLRICGDCHTAIKFMS KCSGRVIIVRDNNRFHHFEDGKCSCGDYW" mobile_element complement(28306952..28307316) /note="source:CACAO_on_E137_scaffold_4 488 831" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 28307317..28307661 /note="source:CACAO_Mariner_E38_scaffold_2 1280 1629" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(28307662..28308175) /note="source:CACAO_on_E137_scaffold_4 1 487" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(28308096..28308173) /note="source:CACAO_MITE_S4_scaffold_1 5 160" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(28308174..28308248) /note="source:CACAO_on_E681_scaffold_9 51 126" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 28308462..28323065 /locus_tag="TCM_047050" /note="dbxref CacaoGD:Thecc1EG047050" mRNA join(28308462..28308906,28308994..28309094, 28309400..28309610,28310257..28310338,28310639..28310927, 28312428..28312530,28312627..28312763,28314073..28314246, 28314795..28314997,28315099..28315242,28315335..28315423, 28316110..28316257,28316539..28316591,28317077..28317132, 28318701..28318864,28320085..28320278,28320566..28320623, 28320708..28320780,28320908..28321009,28321152..28321248, 28321325..28321453,28321529..28321770,28321893..28322033, 28322569..28323065) /locus_tag="TCM_047050" /product="ARM repeat superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033319001" /inference="similar to AA sequence:Phytozome:GSVIVT01033319001" /note="quality class is strong-expertchoice, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6445t3" CDS join(28308735..28308906,28308994..28309094, 28309400..28309610,28310257..28310338,28310639..28310927, 28312428..28312530,28312627..28312763,28314073..28314246, 28314795..28314997,28315099..28315242,28315335..28315423, 28316110..28316257,28316539..28316591,28317077..28317132, 28318701..28318864,28320085..28320278,28320566..28320623, 28320708..28320780,28320908..28321009,28321152..28321248, 28321325..28321453,28321529..28321770,28321893..28322033, 28322569..28322751) /locus_tag="TCM_047050" /codon_start=1 /product="ARM repeat superfamily protein, putative" /protein_id="EOY09327.1" /db_xref="Phytozome:GSVIVT01033319001" /db_xref="TAIR:AT3G57570.1" /translation="MERQEEQEEQLIWKSEAESMVSVTIGRAMSTLLTARPKKLHHSI SRLSPDFSNKTSLVSLDECLWFLHKYVKDAAQRDETLDAVLVPMIEHSLKYKDLKHGG QPMILLNWLFQDELLFQAVAMNLANIIVRKDDRYIAFGWCTLVRGLMEYESSMDQYLL NGIKEKYNALLKILCTCIPHLSYIVRRGSCLQDKFELPSRLSVAAADCLLALTEGLTK KPDILSNRPKSLSSSESNCPVTLTASGIDERKVKATHKSSEVLTRGVEFLLWDHLEDL TYLVQRLLAWSRKSRPLHAKGLEQVLKWLQEIKVHYGGLQDEAGSKIQKTGALLLSSC WKHYGMLLHLEDHKFTKHYKEMLDQYLSGIQYYTSNHDERHAESKDDGIETRKFFLNC LCLLLGRFDGKKFECIVAEYGKQMSHLLLSQLHCNDDDVINGVVSIFKAVIFKPKHSS GSSVTDTKQMDAVVPLLLHLLDERDGAARAVVMLIAEYCSITADGHCLEEVLKRLASG NAIQRRNAFDVISELIHILTDAAHLVSHSAWQNIANNLLLCLGDEETAIWEQTSNLLP LIDPSFVLPALVRLVCSSDEKIQPAAAEAFVRVLKHHNQKPEVVFMLLDSLSNLSQGL ADAETGAHTAEGSNLDCDRVLRLIPEWSKTVQDWNILIGPLIDNMFAKPSNATIVRFL SHINEQLAEAADVVLHRVLLQMKGQKDMIDEASFSRWETRTCTSDDSMKMQQSLFERL CPLLIIRLLPVRVFNDLNSSVMYGRLHNQGIMHEYSDVSSIDDISIATFLLNRAFSKF EFEDVRKLAAELCGRIHPEVLLPIVCSQLEHAADSQDILKIKACLFSVCTSLVVRGKE SLVHSFIIEIRRTIEVILLWPSSDGDEVSKAQHGCIDCLALMICAELQAPELFKDRTS LRSNIVGKKGNPGDAASRPYILRHVIHQLINDKSELKPVLKLRDENCETKAPIPHSFR LCMANVLISACQKISDYGKNLLAKTILPCLIDSVEVIMQPEIRAACIQVLFSAVYHLK SAVLPYSCDLLKLSLKSLGKGSEMERMAGAKLMASLMGGEDSILESIADGLVEARCAL SDISLTDPSSDIQQVCRKLLACLTST" mobile_element complement(28315533..28315643) /note="source:MITE_Tourist_1 243 355" /mobile_element_type="transposon:TIR/MITE" mobile_element 28315768..28315867 /note="source:MITE_Tourist_2 240 339" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(28323536..28323965) /note="source:INTACT135F_F90_scaffold_2-int 13517 13990" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 28323715..28324041 /note="source:scaffold_2_CACTA_0244 12865 13226" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28323827..28324042 /note="source:CACAO_Helitron_E81_scaffold_3 1217 1425" /mobile_element_type="transposon:Helitron" mobile_element 28324020..28324116 /note="source:scaffold_5_CACTA_0614 3376 3470" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28324803..28324864 /note="source:CACAO_Again_on_S_E187_scaffold_5 7 71" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(28324849..28325230) /note="source:scaffold_3_CACTA_0398 3801 4188" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(28324937..28325238) /note="source:CACAO_hAT_E3863_scaffold_9 447 751" /mobile_element_type="transposon:TIR/hAT" mobile_element 28324958..28325308 /note="source:CACAO_Again_on_S_E308_scaffold_10 36 401" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(28326363..28326769) /note="source:INTACT687_F13_scaffold_3-int 1593 2052" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 28328529..28331160 /locus_tag="TCM_047051" /note="dbxref CacaoGD:Thecc1EG047051" mRNA 28328529..28331160 /locus_tag="TCM_047051" /product="Pentatricopeptide repeat (PPR-like) superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s13440.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008012t1" /inference="similar to AA sequence:ricco:27965.m000110" /note="quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc5268t1" CDS 28328663..28330627 /locus_tag="TCM_047051" /note="dbxref ricco:27965.m000110; paralog of Thecc1EG008012t1" /codon_start=1 /product="Pentatricopeptide repeat (PPR-like) superfamily protein" /protein_id="EOY09328.1" /db_xref="TAIR:AT1G03560.1" /translation="MRRTLLKPPYPFSLSRLQSPLLSSPYRNVESPPNPPKPLSNSIS ISSRFIFTPSYLPPPEWIEPFFNVSGLASTFPQDLQPSPWVSKIVNLLDGCSNMESNL DSFCHKFLIQLSPNFVAFVLASAEVQNKPDVALRFFAWAAKQKKYTHKLECYVSMINV LALANDLVKVRFLFGQLKEMGIVMTMSSANSLIKNFVGLGMVEELLWVWRRMKENEIE PSLYTFNLLLNGLVNSMFIESAEQVFKVMENSKIRPDVVSYNTMIKGYCKAGKTHKAM EKIRAMETINLEPDKITYMTLMQACYSEGNFDSCLGLYHEMVEKRCEVPPHAYSLIIG GLCKDGKCIEGYAVFENMIRSGLKANVVIYTTVIDAFAKCGRMEDALKLFQTMKTDGL EPDEVSYGAIVNGLCKSGRLDEAMEYLRFCRANEVAINAMFYCSLIDGLGKAGRVDEA QKLFEEMVEKDCPRDSYCYNALIDALAKCGRVNDALTLFNRMEDEGCDQTVYTYTILI SGLFREHKNEEAMKLWDMMIDKGITPTAASFRALSIGLCLSGKVTRACKILDDLAPMG VIPETAFEDMIHVLCKAGRIKEACKLADGIVDRGREIPGRIRTILINALRKAGNADLA MKLMHSKIGIGYDRMGSIKRRVKFRILVEI" gene 28333080..28338708 /locus_tag="TCM_047052" /note="dbxref CacaoGD:Thecc1EG047052" mRNA join(28333080..28333180,28333273..28333361, 28334047..28334194,28334477..28334529,28335025..28335080, 28336642..28336805,28337984..28338708) /locus_tag="TCM_047052" /product="ARM repeat superfamily protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG047050t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033319001" /note="quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g07797t00001" CDS join(28333095..28333180,28333273..28333361, 28334047..28334194,28334477..28334529,28335025..28335080, 28336642..28336805,28337984..28338011) /locus_tag="TCM_047052" /note="paralog of Thecc1EG047050t1" /codon_start=1 /product="ARM repeat superfamily protein, putative" /protein_id="EOY09329.1" /db_xref="Phytozome:GSVIVT01033319001" /db_xref="TAIR:AT3G57570.2" /translation="MQRRNVFDVISEPIHILTDAAHIVSHSTWQNIANNLLLCLGDEE TAIWEQASNLLPLIDPSFVLPALVRLVCSSDEKIQPAAAEAFVRVLKHHNQKPEVAFR LLDSLSNLSQGLADAETGAHTAEGSKLDCDRVLRLILEWFKTVQDWNILIGPLIDNML AEPSNATIVWLLSHINAQLAEAADVVLHRVLLLMKGQKDMIDEAFFS" mobile_element complement(28333470..28333580) /note="source:MITE_Tourist_1 243 355" /mobile_element_type="transposon:TIR/MITE" mobile_element 28333705..28333804 /note="source:MITE_Tourist_1 256 355" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(28339561..28339650) /note="source:CACAO_Mutator_E592_scaffold_3 3631 3719" /mobile_element_type="transposon:TIR/Mutator" gene complement(28341565..28358067) /locus_tag="TCM_024752" /note="dbxref CacaoGD:Thecc1EG024752" mRNA complement(join(28341565..28342364,28344928..28345317, 28345996..28346345,28348588..28348831,28351298..28351355, 28352128..28352371,28353223..28353263,28354603..28354930, 28355145..28355221,28357928..28358067)) /locus_tag="TCM_024752" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.24 coverage" CDS complement(join(28342044..28342364,28344928..28345317, 28345996..28346345,28348588..28348831,28351298..28351355, 28352128..28352371,28353223..28353263,28354603..28354930, 28355145..28355208)) /locus_tag="TCM_024752" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09330.1" /translation="MLEVLIIVRSGERLRMSLEMKGNRGYGLGNIYAPKREWKRQEFW LFLYDFVRSFGVAWILGGDFNTIRNEDEHSRVSNISNSCFQFSCFVKGLNLVDLPLLE DKYTWGNNRKVPIFSHLDMFLLDFEISLCMLMNKAMEIWLVKGFPRIYTLSINKTGKV VEFEMWVKNIWSWKVNLCKNLLGREMDQWDRFMMLINNACLSKDLRDNLVRKESLSST YSAKSCCEWACSINVIFGSDFANAIKWDALVRDDKGKSNRLDMKSEKRLEDMGGGLVQ LVGILTLKESKKKNPNAGAEEDFEWLKRSAIGLLHDLSQFDRIQDKHAREARRRTNTT ESLKVNGEECEEPKVIRQMIRNHFVKLYGACLKVFVRKIRCEIRKLSKSSRNALDEPF SEREIWDTIFNCDRDKAPGLDGYNLNFFKRQWSIVKRDIMDFMEFFFQRWELAFGLKI NFNKSNLFGVGIEQNIPRTWADSVCCLVRSLPSTYLGLPLGANPCNLQMWQSLIQRVE AGLNEWKSKLLSMGGKVIILRAMLASLPLYYMSLFKLSQGVIKELEKMQRRFLWCRGG SKDKIHMGNGLTIPPTKHDLRAILEAFTIFAALKWAETHSLEFESDSLNAVKWSNNPN RAPWKYRRWMLRIENLKGRIKEWNVVHTLRSANNAADMLAKKGVMRESDLFHVYL" mobile_element 28343061..28343558 /note="source:CACAO_M_E4753_F17_scaffold_2 7256 7757" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28343388..28343583 /note="source:CACAO_on_E732_scaffold_9 3707 3931" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(28357448..28357530) /note="source:scaffold_3_CACTA_0396 905 987" /mobile_element_type="transposon:TIR/CACTA" gene 28358162..28365383 /locus_tag="TCM_024753" /note="dbxref CacaoGD:Thecc1EG024753" mRNA join(28358162..28358936,28361690..28361841, 28361923..28362113,28362262..28362369,28362474..28364128, 28364356..28364428,28364780..28365383) /locus_tag="TCM_024753" /product="RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s05370.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042306t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033321001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04255t00001" CDS join(28358740..28358936,28361690..28361841, 28361923..28362113,28362262..28362369,28362474..28364128, 28364356..28364428,28364780..28364929) /locus_tag="TCM_024753" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042306t1" /codon_start=1 /product="RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1" /protein_id="EOY09331.1" /db_xref="Phytozome:GSVIVT01033321001" /db_xref="TAIR:AT1G68030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7THZ7" /translation="MLQLFFAVAFSAVPLTLYVPPVRSLNLFVQTVEDILRQTALYTL RAYPRIRLGLSRIFHSIFHLSRYIVCWLLNSSTLMDEIGRMLGMFSSGPSLPWLWIIE YLSSFRQIDTSIIRGLIEAAPVLPDDLGKNTREMIALRCLEELFGPTNGLRDVAPPDS RVVFDLAASCEDVLKHIVQEVSLSNLRKAGPELLRWDVHPFIMHKRASLPKCALEQLK DSILEETPVLDGDENTPTWRLDDSDDENGNREGNLIPQTHKDDNEVLQDGLLERNLIP IKRCKSDLVAGNLVGLVSCNQDGMHNDFPVNAKKFKQDATCTIQSVEKIPIPLHGVEQ LDESGKIIKVTEIEGNNLGKDSQAGEGDEDVFVVSRTLGQSDAVGHVELQDNEMENAQ NADIMGEQKYGYRPSKNVMMDESNHVENGALEKSPGGDASENFDQGFPLYSLNSTSAV GLQQNIEPDEAKADMEHPCAEKMCEYVDERFNIALNKSLFLSSQCIPSQDPLGKSGWT EQKFCVKCNKNGQVLVCSSSGCPLVVHESCLGSPARFDDKGNFYCPFCVCSVSITKYL EAKDKTSLARKELDAFLEHCSKKLTEQQWKLQSHLRLNVDEDLVGIQMNGHLGESKHK FISQKREVKCGPSASCLDGNKLCVEEKFVGGAVRVQGEKNEEQEKLVHGQQSMREHEH QQDQLPDNRKYSDDNPAGENTKTILENQVEVGGKNVKEAVQPQITNPPQKPVCAFNGD GEESPTAANDKFIVSSYSIRLRKRETKCTFPPIPQLRRKKLPWTKNEEEMLRREVEKY ASHGGTVPWKKILDMGTSVFLSGRTTVDLKDKWRNMCKGGPSM" mRNA join(28360695..28360933,28361690..28361841, 28361923..28362113,28362262..28362369,28362474..28364128, 28364356..28364428,28364780..28365374) /locus_tag="TCM_024753" /product="RING/FYVE/PHD zinc finger superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s05370.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042306t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033321001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1106t2; inference alignment:Newbler:10:TSA:cgbaB_g04255t00001" CDS join(28361727..28361841,28361923..28362113, 28362262..28362369,28362474..28364128,28364356..28364428, 28364780..28364929) /locus_tag="TCM_024753" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042306t1" /codon_start=1 /product="RING/FYVE/PHD zinc finger superfamily protein, putative isoform 2" /protein_id="EOY09332.1" /db_xref="Phytozome:GSVIVT01033321001" /db_xref="TAIR:AT1G68030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7THZ7" /translation="MDEIGRMLGMFSSGPSLPWLWIIEYLSSFRQIDTSIIRGLIEAA PVLPDDLGKNTREMIALRCLEELFGPTNGLRDVAPPDSRVVFDLAASCEDVLKHIVQE VSLSNLRKAGPELLRWDVHPFIMHKRASLPKCALEQLKDSILEETPVLDGDENTPTWR LDDSDDENGNREGNLIPQTHKDDNEVLQDGLLERNLIPIKRCKSDLVAGNLVGLVSCN QDGMHNDFPVNAKKFKQDATCTIQSVEKIPIPLHGVEQLDESGKIIKVTEIEGNNLGK DSQAGEGDEDVFVVSRTLGQSDAVGHVELQDNEMENAQNADIMGEQKYGYRPSKNVMM DESNHVENGALEKSPGGDASENFDQGFPLYSLNSTSAVGLQQNIEPDEAKADMEHPCA EKMCEYVDERFNIALNKSLFLSSQCIPSQDPLGKSGWTEQKFCVKCNKNGQVLVCSSS GCPLVVHESCLGSPARFDDKGNFYCPFCVCSVSITKYLEAKDKTSLARKELDAFLEHC SKKLTEQQWKLQSHLRLNVDEDLVGIQMNGHLGESKHKFISQKREVKCGPSASCLDGN KLCVEEKFVGGAVRVQGEKNEEQEKLVHGQQSMREHEHQQDQLPDNRKYSDDNPAGEN TKTILENQVEVGGKNVKEAVQPQITNPPQKPVCAFNGDGEESPTAANDKFIVSSYSIR LRKRETKCTFPPIPQLRRKKLPWTKNEEEMLRREVEKYASHGGTVPWKKILDMGTSVF LSGRTTVDLKDKWRNMCKGGPSM" gene 28365390..28366742 /locus_tag="TCM_024755" /note="dbxref CacaoGD:Thecc1EG024755" mRNA join(28365390..28366053,28366157..28366742) /locus_tag="TCM_024755" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.76 coverage" CDS join(28365660..28366053,28366157..28366386) /locus_tag="TCM_024755" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09333.1" /translation="MIVLCHHHHPCVSARFIHMHAATSIRVIIPIQPVWFCQEDPLVA ECDPGFCRDFCLWISLIVQGTNMMCTGQSVAFFVLMLRRLCLYIESVQERFLVYIAFE GYWGGVGRPGILSFLYRFLDTGHVVLIQGEKIPIRHVRWFRNMNIFAERGREGSKAWE KGEGSPGNQVVDGRKQHVKNSGARESEKCCEVGFLHGKIQFMSTSHS" gene 28367270..28368658 /locus_tag="TCM_024756" /note="dbxref CacaoGD:Thecc1EG024756" mRNA 28367270..28368658 /locus_tag="TCM_024756" /product="Integrase-type DNA-binding superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s05360.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05360.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc3321t1" CDS 28367610..28368461 /locus_tag="TCM_024756" /codon_start=1 /product="Integrase-type DNA-binding superfamily protein" /protein_id="EOY09334.1" /db_xref="Phytozome:POPTR_0016s05360.1" /db_xref="TAIR:AT3G57600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SL54" /translation="MESYRRSPLKPWKKGPTRGKGGPQNASCQYRGVRQRTWGKWVAE IREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPEAYLNLPHLQPNSNPPNKLQKFK WIPSKNFVSMFPSCGLLNINAQPSVHVIHQRLQELKKNGVLNQTGSSSSSSCESKTDI QIINDKTPAEDPQMKEKDVEISSDKMAGAYEDKPQIDLHEFLQQLGILREEKQSEGAE TTESLTATDSSIKDYDEVAVFAENSFNWDAMIEMHGVADYQGAEASFQVHDAQEDLTF PASIWNF" gene complement(28368868..28377367) /locus_tag="TCM_024757" /note="dbxref CacaoGD:Thecc1EG024757" mRNA complement(join(28368868..28369651,28369755..28369777, 28370115..28370249,28370398..28370542,28370956..28371059, 28371186..28371392,28371731..28371988,28372369..28372422, 28372925..28372997,28373814..28374001,28374628..28374792, 28375196..28375279,28375401..28375490,28376125..28376193, 28376392..28376496,28376834..28377045)) /locus_tag="TCM_024757" /product="DNA-binding protein, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s05330.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s05330.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1198t1; inference alignment:Newbler:10:TSA:cgbaB_g01582t00001; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1149t5" mRNA complement(join(28368953..28369651,28369910..28369996, 28370115..28370249,28370398..28370542,28370956..28371059, 28371186..28371392,28371731..28371988,28372369..28372422, 28372925..28372997,28373814..28374001,28374628..28374792, 28375196..28375279,28375401..28375490,28376125..28376193, 28376392..28376496,28376834..28377367)) /locus_tag="TCM_024757" /product="DNA-binding protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s05330.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s05330.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:PASA:2:TSA:puevd3b023944t1a2; inference alignment:Newbler:10:TSA:cgbaB_g01582t00001" mRNA complement(join(28368953..28369651,28369755..28369996, 28370115..28370249,28370398..28370542,28370956..28371059, 28371186..28371392,28371731..28371988,28372369..28372422, 28372925..28372997,28373814..28374001,28374628..28374792, 28375196..28375279,28375401..28375490,28376125..28376193, 28376392..28376496,28376834..28377367)) /locus_tag="TCM_024757" /product="DNA-binding protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s05330.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s05330.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:PASA:2:TSA:puevd3b023944t1a3; alternateUTRof:Thecc1EG024757t1; inference alignment:Newbler:10:TSA:cgbaB_g01582t00001" mRNA complement(join(28369403..28369651,28369778..28369996, 28370115..28370249,28370398..28370542,28370956..28371059, 28371186..28371392,28371731..28371988,28372369..28372422, 28372925..28372997,28373814..28374001,28374628..28374792, 28375196..28375279,28375401..28375490,28376125..28376193, 28376392..28376496,28376834..28377367)) /locus_tag="TCM_024757" /product="DNA-binding protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s05330.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s05330.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01582t00001" CDS complement(join(28369616..28369651,28369910..28369996, 28370115..28370249,28370398..28370542,28370956..28371059, 28371186..28371392,28371731..28371988,28372369..28372422, 28372925..28372997,28373814..28374001,28374628..28374792, 28375196..28375279,28375401..28375490,28376125..28376193, 28376392..28376496,28376834..28376926)) /locus_tag="TCM_024757" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="DNA-binding protein, putative isoform 3" /protein_id="EOY09337.1" /db_xref="Phytozome:POPTR_0006s05330.1" /db_xref="TAIR:AT2G03270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6F2U8" /translation="MAMEGETKKKSSPISLQQFISTMTPLIDLEKEAEISASISSGAS RNLDTAQKRGSTILNLKCVDAQTGLMGKSLLEFQSTKGDVLPAHKLGTHDVVVLKPNK ADIGSPALGQGVVYRLKDSSITVAFDDVPEDGLNSPLRLEKVANEVTYRRMKDALIQL SKAVLKGPAADLVPVLFGERLPSVSKKGVTFTPFNSSLDHSQKDAILKALSSKDVFLL HGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLAPHRVKLVRLGHPAR LLPQVLDSALDVLVLRGDNSSLANDIRKEMKALNGKLLKTKDRSTRRDIQKELRTLSK EERKRQQLAVTDVIKNADVILTTLTGAFSRKLDNTTFDLVIIDEAAQALEIACWMALL KGSRCILAGDHLQLPPTIQSVEAERKGLGRTLFERLADLYGDKVTSMLTVQYRMHELI MNWSSKELYNSKIEAHPSVAAHMLFDLENVKRSSSTEPTLLLIDIAGCDMEEKKDEEE STLNEGEAEVAISHAKRLVQTGVHASDIGIITPYAAQVVLLKTLKSNDDKLKDMEIST VDGFQGREKEAIIISMVRSNSKKEVGFLSDCRRMNVAVTRARRQCCLVCDTETKQMEN DLIETS" CDS complement(join(28369630..28369651,28369755..28369777, 28370115..28370249,28370398..28370542,28370956..28371059, 28371186..28371392,28371731..28371988,28372369..28372422, 28372925..28372997,28373814..28374001,28374628..28374792, 28375196..28375279,28375401..28375490,28376125..28376193, 28376392..28376496,28376834..28376926)) /locus_tag="TCM_024757" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="DNA-binding protein, putative isoform 4" /protein_id="EOY09338.1" /db_xref="Phytozome:POPTR_0006s05330.1" /db_xref="TAIR:AT2G03270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6F2U8" /translation="MAMEGETKKKSSPISLQQFISTMTPLIDLEKEAEISASISSGAS RNLDTAQKRGSTILNLKCVDAQTGLMGKSLLEFQSTKGDVLPAHKLGTHDVVVLKPNK ADIGSPALGQGVVYRLKDSSITVAFDDVPEDGLNSPLRLEKVANEVTYRRMKDALIQL SKAVLKGPAADLVPVLFGERLPSVSKKGVTFTPFNSSLDHSQKDAILKALSSKDVFLL HGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLAPHRVKLVRLGHPAR LLPQVLDSALDVLVLRGDNSSLANDIRKEMKALNGKLLKTKDRSTRRDIQKELRTLSK EERKRQQLAVTDVIKNADVILTTLTGAFSRKLDNTTFDLVIIDEAAQALEIACWMALL KGSRCILAGDHLQLPPTIQSVEAERKGLGRTLFERLADLYGDKVTSMLTVQYRMHELI MNWSSKELYNSKIEAHPSVAAHMLFDLENVKRSSSTEPTLLLIDIAGCDMEEKKDEEE STLNEGEAEVAISHAKRLVQTGVHASDIGIITPYAAQVVLLKTLKSNDDKLKDMEIST VDGFQGREKEAIIISMVRSNSKKEVFQSVGFGSKWKMT" CDS complement(join(28369820..28369996,28370115..28370249, 28370398..28370542,28370956..28371059,28371186..28371392, 28371731..28371988,28372369..28372422,28372925..28372997, 28373814..28374001,28374628..28374792,28375196..28375279, 28375401..28375490,28376125..28376193,28376392..28376496, 28376834..28376926)) /locus_tag="TCM_024757" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="DNA-binding protein, putative isoform 1" /protein_id="EOY09335.1" /db_xref="Phytozome:POPTR_0006s05330.1" /db_xref="TAIR:AT2G03270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6F2U8" /translation="MAMEGETKKKSSPISLQQFISTMTPLIDLEKEAEISASISSGAS RNLDTAQKRGSTILNLKCVDAQTGLMGKSLLEFQSTKGDVLPAHKLGTHDVVVLKPNK ADIGSPALGQGVVYRLKDSSITVAFDDVPEDGLNSPLRLEKVANEVTYRRMKDALIQL SKAVLKGPAADLVPVLFGERLPSVSKKGVTFTPFNSSLDHSQKDAILKALSSKDVFLL HGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLAPHRVKLVRLGHPAR LLPQVLDSALDVLVLRGDNSSLANDIRKEMKALNGKLLKTKDRSTRRDIQKELRTLSK EERKRQQLAVTDVIKNADVILTTLTGAFSRKLDNTTFDLVIIDEAAQALEIACWMALL KGSRCILAGDHLQLPPTIQSVEAERKGLGRTLFERLADLYGDKVTSMLTVQYRMHELI MNWSSKELYNSKIEAHPSVAAHMLFDLENVKRSSSTEPTLLLIDIAGCDMEEKKDEEE STLNEGEAEVAISHAKRLVQTGVHASDIGIITPYAAQVVLLKTLKSNDDKLKDMEIST VDGFQGREKEAIIISMVRSNSKKEVGFLSDCRRMNVAVTRARRQCCLVCDTETVSSDG FLKRLVEYFEEHGEYLSASEYCNE" CDS complement(join(28369820..28369996,28370115..28370249, 28370398..28370542,28370956..28371059,28371186..28371392, 28371731..28371988,28372369..28372422,28372925..28372997, 28373814..28374001,28374628..28374792,28375196..28375279, 28375401..28375490,28376125..28376193,28376392..28376496, 28376834..28376926)) /locus_tag="TCM_024757" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="DNA-binding protein, putative isoform 1" /protein_id="EOY09336.1" /db_xref="Phytozome:POPTR_0006s05330.1" /db_xref="TAIR:AT2G03270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6F2U8" /translation="MAMEGETKKKSSPISLQQFISTMTPLIDLEKEAEISASISSGAS RNLDTAQKRGSTILNLKCVDAQTGLMGKSLLEFQSTKGDVLPAHKLGTHDVVVLKPNK ADIGSPALGQGVVYRLKDSSITVAFDDVPEDGLNSPLRLEKVANEVTYRRMKDALIQL SKAVLKGPAADLVPVLFGERLPSVSKKGVTFTPFNSSLDHSQKDAILKALSSKDVFLL HGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLAPHRVKLVRLGHPAR LLPQVLDSALDVLVLRGDNSSLANDIRKEMKALNGKLLKTKDRSTRRDIQKELRTLSK EERKRQQLAVTDVIKNADVILTTLTGAFSRKLDNTTFDLVIIDEAAQALEIACWMALL KGSRCILAGDHLQLPPTIQSVEAERKGLGRTLFERLADLYGDKVTSMLTVQYRMHELI MNWSSKELYNSKIEAHPSVAAHMLFDLENVKRSSSTEPTLLLIDIAGCDMEEKKDEEE STLNEGEAEVAISHAKRLVQTGVHASDIGIITPYAAQVVLLKTLKSNDDKLKDMEIST VDGFQGREKEAIIISMVRSNSKKEVGFLSDCRRMNVAVTRARRQCCLVCDTETVSSDG FLKRLVEYFEEHGEYLSASEYCNE" mobile_element 28374971..28377508 /note="source:scaffold_5_CACTA_0609 1 2538" /mobile_element_type="transposon:TIR/CACTA" gene complement(28377414..28381817) /locus_tag="TCM_024758" /note="dbxref CacaoGD:Thecc1EG024758" mRNA complement(join(28377414..28378411,28378841..28379152, 28379335..28380027,28381506..28381817)) /locus_tag="TCM_024758" /product="Adenylosuccinate synthase" /inference="alignment:exonerate- protein:2:ricco:27810.m000643" /inference="similar to AA sequence:ricco:27810.m000643" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01870t00001" CDS complement(join(28378241..28378411,28378841..28379152, 28379335..28380027,28381506..28381799)) /locus_tag="TCM_024758" /note="dbxref ricco:27810.m000643" /codon_start=1 /product="Adenylosuccinate synthase" /protein_id="EOY09339.1" /db_xref="TAIR:AT3G57610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q96529" /translation="MNFSSLALDPSPVATSRWAHQRPALHFHHHRRNFVVCSLKPAAS SSLSVAESAASESLSRIGSLSQVSGVLGSQWGDEGKGKLVDILAGHFDIVARCQGGAN AGHTIYNSEGKKFALHLVPSGILNEETLCVIGNGVVVNLPGLFKEIDGLEANGVSCKG RILVSDRAHLLFDFHQVVDGLREAELAKSLIGTTRRGIGPCYSSKVIRNGIRVSDLRH MDTFAQKLDILLSDAASRFPGFNYTPEMLKEEVENYKRFAERLEPFIADTVHVMNESI AQKKRILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYT TRVGSGPFPTEILGQGGDLLRFAGQEFGTTTGRPRRCGWLDIVALKFCCQVNGFSSLN LTKLDVLSDLPEIKLGVAYKQVDGTPVQSFPADLRLLEQLKVEYEVLPGWNCDISSIR NYSDLPKGAQQYVERIEELVGVPVHYIGVGPGRDALIFK" mobile_element 28382912..28383573 /note="source:scaffold_2_CACTA_0244 13508 14694" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28383574..28384149 /note="source:INTACT135F_F90_scaffold_2-int 13385 14003" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 28384150..28384161 /note="source:scaffold_2_CACTA_0244 14695 14719" /mobile_element_type="transposon:TIR/CACTA" gene complement(28385738..28389935) /locus_tag="TCM_024760" /note="dbxref CacaoGD:Thecc1EG024760" mRNA complement(join(28385738..28386025,28386309..28388051, 28388147..28389148,28389447..28389935)) /locus_tag="TCM_024760" /product="Cation/H+ exchanger 19" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g04820.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016378t2" /inference="similar to AA sequence:Phytozome:POPTR_0010s00740.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6257t2" CDS complement(join(28386867..28388051,28388147..28389148, 28389447..28389650)) /locus_tag="TCM_024760" /note="paralog of Thecc1EG016378t2" /codon_start=1 /product="Cation/H+ exchanger 19" /protein_id="EOY09340.1" /db_xref="Phytozome:POPTR_0010s00740.1" /db_xref="TAIR:AT3G17630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6ATD0" /translation="MATNNGTAAPVCPAPMKATSNGAFQNENPLDFALPLLIVQIILV VTLTRVLAFMLRPLRQPRVIAEIIGGILLGPSALGRNKEFMNKIFPKRSMTVLDTLAN IGLLFFLFLVGLELDIRAIRRTGKKALGIAAAGISLPFVLGIGTSFVLRSTINKGVGE IAFLVFMGVALSITAFPVLARILAELKLLTTDVGRIAMSAAAVNDVVAWILLALAIAL TGSNNSPLVSVWVLLCGAAFVLFAIFLLKPILTLMARRCLDGEPVKELYICITLSLVL AAGFVTDTIGIHALFGAFVVGIIVPKDGPFAGVLIEKIEDLVSGLFLPLYFASSGLKT NVATIKGGQSWGLLVLVIFNACFGKIVGTIGVSMLFKVPFREALTLGFLMNTKGLVEL IVLNIGKDRKVLNDQSFAILVLMALFTTFITTPIVMAIYKPARKGEPYKHRRIHRKDF DTELRILACFHSTRNIPTLINLIESSRGIQKRGHLCVYAMHLMELSERSSAITMIHKA RKNGLPFWNKKRQDQDQMVIAFEAYQQLSSVTVRPMTAISAFNSIHEDICTSADRKRA ALILMPFHKHQRLDGSMESLGYSFHLVNQRVLRHAPCSVGILVDRGLGGTTQVVASEV SYSVVVPFFGGQDDREALAYGMRMAEHPGINLTVLKFTAKPGMSLDAKADVGAESDKD NEILSEFISLSKRNESIGHEEKIVGSKEDIIAALRSMSKSSLFLVGRMSPTMPLTERS TDCPELGHLGSYLASSDFSTTSSILVVQQYDPSTNTMEQAQFDGNEVSNAPLPDAV" gene complement(28390042..28399815) /locus_tag="TCM_024761" /note="dbxref CacaoGD:Thecc1EG024761" mRNA complement(join(28390042..28390893,28392290..28392475, 28392576..28392674,28393961..28394192,28394552..28394632, 28394764..28395011,28395163..28395276,28395855..28395989, 28396074..28396160,28396237..28396449,28396974..28397232, 28397327..28397513,28398055..28398148,28398397..28398846, 28399583..28399815)) /locus_tag="TCM_024761" /product="Exostosin family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033325001" /inference="similar to AA sequence:Phytozome:GSVIVT01033325001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc697t4" mRNA complement(join(28390267..28390893,28392290..28392475, 28392576..28392674,28393961..28394192,28394552..28394632, 28394764..28395011,28395163..28395276,28395855..28395989, 28396074..28396160,28396237..28396449,28396974..28397232, 28397327..28397513,28398055..28398148,28398397..28398846, 28399438..28399555)) /locus_tag="TCM_024761" /product="Exostosin family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033325001" /inference="similar to AA sequence:Phytozome:GSVIVT01033325001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc709t2; alternateUTRof:Thecc1EG024761t1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc697t4" CDS complement(join(28390792..28390893,28392290..28392475, 28392576..28392674,28393961..28394192,28394552..28394632, 28394764..28395011,28395163..28395276,28395855..28395989, 28396074..28396160,28396237..28396449,28396974..28397232, 28397327..28397513,28398055..28398148,28398397..28398744)) /locus_tag="TCM_024761" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Exostosin family protein isoform 1" /protein_id="EOY09341.1" /db_xref="Phytozome:GSVIVT01033325001" /db_xref="TAIR:AT3G57630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SVX7" /translation="MMFSVQKWKCSWSLVATVASVIVPVSVVHLFLFPVVPSFDYFRA PQVQYKCVPINASVEKVADHVWENIQPGLDLDHRFPSDLHNGVVYHNAPWKAEIGQWL SSCDAIAREVNIVETIGGRRCKADCSGQGVCNHEMGQCRCFHGFSGEECSERVHLSCN YPKTPELPYGRWVVSICPAHCDTTRAMCFCGEGTKYPNRPVAEACGFQMNLPSEPGGP KLTDWSKADLDNIFTTNGSKPGWCNVDPDAAYASKVLFKEECDCKYDGLWGRFCEVPV ESVCINQCSGHGHCRGGFCQCYNGWYGTDCSIPSVVSPMGEWPKWLRPAQVDIPSIEH TGSLVNLDAAVKKKRPLIYVYDLPPEFNSLLLEGRHFKFECVNRIYDDRNATLWTDQL YGSQMALYESILASPYRTLNGEEADFFFVPVLDSCIITRADDAPHLSMENHTGLRSSL TLEFYRKAYDHIVEKYAYWNRSAGRDHVWSFSWDEGACYAPKEIWNSMMLVHWGNTNS KHNHSTTAYWADNWDKIPSDRRGNHPCFDPAKDLVLPAWKHPDVTALSAKLWSRPREK RKTLFYFNGNLGPAFTSGRPETTYSMGIRQKLADEFGSTPNKEGKLGKQHAEDVIVTS LRSNNYHEDIANSTFCGVLPGDGWSGRMEDSVLQGCIPVVIQDGIFLPYENVLNYESF AVRIREDEIPNLIKILQGINESEIEFKLANVQKIQQRFLYRNSILLEAERQKTLFGRL EDWAVQFLQQTEDDVFTTFLQVLHYKLHNDPWRRQLAHLKKEYGVPPECLIRTK" CDS complement(join(28390792..28390893,28392290..28392475, 28392576..28392674,28393961..28394192,28394552..28394632, 28394764..28395011,28395163..28395276,28395855..28395989, 28396074..28396160,28396237..28396449,28396974..28397232, 28397327..28397513,28398055..28398148,28398397..28398744)) /locus_tag="TCM_024761" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Exostosin family protein isoform 1" /protein_id="EOY09342.1" /db_xref="Phytozome:GSVIVT01033325001" /db_xref="TAIR:AT3G57630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SVX7" /translation="MMFSVQKWKCSWSLVATVASVIVPVSVVHLFLFPVVPSFDYFRA PQVQYKCVPINASVEKVADHVWENIQPGLDLDHRFPSDLHNGVVYHNAPWKAEIGQWL SSCDAIAREVNIVETIGGRRCKADCSGQGVCNHEMGQCRCFHGFSGEECSERVHLSCN YPKTPELPYGRWVVSICPAHCDTTRAMCFCGEGTKYPNRPVAEACGFQMNLPSEPGGP KLTDWSKADLDNIFTTNGSKPGWCNVDPDAAYASKVLFKEECDCKYDGLWGRFCEVPV ESVCINQCSGHGHCRGGFCQCYNGWYGTDCSIPSVVSPMGEWPKWLRPAQVDIPSIEH TGSLVNLDAAVKKKRPLIYVYDLPPEFNSLLLEGRHFKFECVNRIYDDRNATLWTDQL YGSQMALYESILASPYRTLNGEEADFFFVPVLDSCIITRADDAPHLSMENHTGLRSSL TLEFYRKAYDHIVEKYAYWNRSAGRDHVWSFSWDEGACYAPKEIWNSMMLVHWGNTNS KHNHSTTAYWADNWDKIPSDRRGNHPCFDPAKDLVLPAWKHPDVTALSAKLWSRPREK RKTLFYFNGNLGPAFTSGRPETTYSMGIRQKLADEFGSTPNKEGKLGKQHAEDVIVTS LRSNNYHEDIANSTFCGVLPGDGWSGRMEDSVLQGCIPVVIQDGIFLPYENVLNYESF AVRIREDEIPNLIKILQGINESEIEFKLANVQKIQQRFLYRNSILLEAERQKTLFGRL EDWAVQFLQQTEDDVFTTFLQVLHYKLHNDPWRRQLAHLKKEYGVPPECLIRTK" gene 28401561..28431232 /locus_tag="TCM_024764" /note="dbxref CacaoGD:Thecc1EG024764" mRNA join(28401561..28401632,28430062..28430117, 28431027..28431232) /locus_tag="TCM_024764" /product="Uncharacterized protein" /note="quality class is strong-expresste, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaB_g18105t00001" CDS join(28401617..28401632,28430062..28430117, 28431027..28431185) /locus_tag="TCM_024764" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09343.1" /translation="MVNGFVYYSISRKISKSALLLYYEVAMNADDTVQRYKARLVAKR YNQVEGFDYQETFSPVAKQTAVRVFMALATAK" mobile_element 28401988..28403592 /note="source:INTACT164_F159_scaffold_7-int 239 1790" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28403686..28403851 /note="source:INTACT164_F159_scaffold_7-int 1790 1955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28403852..28411859 /note="source:INTACT635_F280_scaffold_5-int 1 8008" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(28406124..28416133) /locus_tag="TCM_024765" /note="dbxref CacaoGD:Thecc1EG024765" mRNA complement(join(28406124..28406577,28406656..28406875, 28406960..28407184,28407263..28407690,28407803..28408108, 28408187..28408304,28408402..28409118,28413363..28413457, 28415653..28416133)) /locus_tag="TCM_024765" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018183t1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.91 coverage" CDS complement(join(28406414..28406577,28406656..28406875, 28406960..28407184,28407263..28407690,28407803..28408108, 28408187..28408304,28408402..28409097)) /locus_tag="TCM_024765" /note="paralog of Thecc1EG018183t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09344.1" /translation="MPRTHLPPKIHYGELGKAAIRRKTTAHKRKNNDFELVAPTKIRV GKSGEVPLVPENWGDEIIRERGEDHFWEEVRAKQVDEHPSESVGYDWNRLCSKAPPHR RSGILGPPILKFRFERGEFPLSATKLGSNSQFVHSWDEWVTKVLKNPSYVKLLSSVGI LDAVRITSKLNIRREKRIDVWRAILARWSTFSHTMITAWGEFTFTLEDVCVLLELPCI ENDDFHSIKLSEEEFNAKGIEIDSPEYPDHKYELVALTIFWLARHVLLRCPDDGSLYK RLDLQQLKTVELAGRYKVLTYVDVSFIQMCLWERFGTCAPVPNAYLFASFSVNNPLSK NNYRAWAWHDRLPRGNVLEVMDVTKEFNPRPYVQPINGFGGDRNILSVEIYSPFRVAR QFGFDQPAPPDSSSSISFSSCVSSFFMARLQLRLDKLKSCTIPAFDRVGTNTSGWFAY WMECVEEWRSFIMPLTNPRACLYTPPISNFDVSLRLISLKKKRNVNEEKYDAPCVLTH QTKHVHQKRETTARVELNLIEEEETFEAETEEESCDFERSDESDDESVDVDKAEVEGE LTPFDDFIDLDVLFPNHVQSSTMNQAIRDEVVPDTETIPAIEVVLEATPNVEVIHDVG VDTDDVRAIPMTLHASSSPVPKHRDASSAFSTQVAYTEQSGEFWSTSFIKNVDVICLM MEVLGKALAISHAPLMSTSLEELQQMLQDFDDACNF" mobile_element 28411961..28412387 /note="source:INTACT164_F159_scaffold_7-int 2022 2607" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28412386..28412963 /note="source:INTACT88_F12_scaffold_4-int 10277 10834" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28412387..28413042) /note="source:CACAO_M_S_E17777_F2_scaffold_3 7406 8035" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28413608..28414178 /note="source:INTACT409F_F47_scaffold_4-int 16257 16967" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 28414192..28414370 /note="source:INTACT88_F12_scaffold_4-int 12227 12403" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28414356..28414577 /note="source:INTACT88_F12_scaffold_4-int 13762 13984" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28414575..28415237) /note="source:CACAO_M_S_E17777_F2_scaffold_3 7406 8025" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28415873..28416361 /note="source:INTACT409F_F47_scaffold_4-int 16463 16967" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 28416375..28416776 /note="source:INTACT88_F12_scaffold_4-int 12227 12625" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28416758..28417174) /note="source:INTACT88_F12_scaffold_4-int 12227 12624" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28417188..28417774) /note="source:INTACT409F_F47_scaffold_4-int 16257 16967" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 28418345..28419017 /note="source:CACAO_M_S_E17777_F2_scaffold_3 7411 8046" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28418463..28419013) /note="source:INTACT88_F12_scaffold_4-int 10273 10790" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28419008..28419141 /note="source:INTACT164_F159_scaffold_7-int 2601 2734" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28419776..28428173 /note="source:INTACT164_F159_scaffold_7-int 370 11345" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 28430864..28432518 /locus_tag="TCM_024769" /note="dbxref CacaoGD:Thecc1EG024769" mRNA join(28430864..28431085,28431212..28431312, 28431658..28431743,28431831..28432015,28432085..28432518) /locus_tag="TCM_024769" /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022417t1" /inference="similar to AA sequence:frave:gene20290" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.76 coverage" CDS join(28430928..28431085,28431212..28431312, 28431658..28431743,28431831..28432015,28432085..28432433) /locus_tag="TCM_024769" /note="dbxref frave:gene20290; paralog of Thecc1EG022417t1" /codon_start=1 /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /protein_id="EOY09345.1" /db_xref="TAIR:AT4G23160.1" /translation="MQCELQALEDNATWSILPLPSDSHAIGCKWVFKVAMNADDTVQR YKARLVAKSNEFLNGDLDEVVYMDLPEGYSIKGEYPLGSKMVYEYGMLGTKPVTTLID YSHKLSKAVDGKEVLSLFMEKPKQEHMSAAYGPLKYLKLAPGQGIFMKADSYLSILAY SDSDWVGCGDTRKSVTGSTEAEYKSMAAVCYEIMWLKYLLSDLGIKRSAAVKLYCDNQ SAFHICRNPVFHERTKHIDMDHHFIREEVLERLIEPVYISTGSLTADLLTKALQPTQY HRLLHKMNIHDIHAPP" gene complement(28433417..28436585) /locus_tag="TCM_024770" /note="dbxref CacaoGD:Thecc1EG024770" mRNA complement(join(28433417..28434873,28435238..28436585)) /locus_tag="TCM_024770" /product="Uncharacterized protein" /inference="similar to AA sequence:Phytozome:POPTR_0016s05820.1" /note="quality class is strong, express is strong, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.87 coverage; weak similarity to Cysteine/Histidine-rich C1 domain family protein" CDS complement(join(28434046..28434873,28435238..28436014)) /locus_tag="TCM_024770" /note="weak similarity to Cysteine/Histidine-rich C1 domain family protein" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09346.1" /db_xref="Phytozome:POPTR_0016s05820.1" /db_xref="TAIR:AT5G40320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9P591" /translation="MELKYFSHKHPLMLIQKQMHAPTADSTSGGEEEEAAYCFLCEDR VEGPSYCCNDCQFYLHNTCAEFELHPEINHPFHPKHPLILRPKPPHRVGIYLYWFCHT GRRGFGYHCASCNFSLDVNCALFQLSMIGNFPKLERLIRKHPLIFIEKHNRKDRGDCI GCKEPLSFPIYRCLDCYFHLHKECAELPLEITHTYHRKHPLTLLADPSTHPGKCSCYL CKLTFKGFVYHCSICKLGIRVADAFPLRMVTVTSHEHPFTLRQRSNMPTFSGEVQVVN NCDGCMRPISAPFYRCEQGEFFLHMNCAELPRQKQHLSRTHLLTLTNDELAYCWACHR HHQGFSYKCDKKYCDFSVDITCSLLSDTLWHPSHEHLLFLDHKYSGDCSACQSPISYS YRLGAYRCKHCKFVLDFNCITLPNTAWYKYDKHHLTLRYHDNSDPSQHFYDICEEKRD PNHWFTTVQIVITLFILNVFLGISHLASLVAHTDTVIIHTPSLLSKGFGTVLGVVYAV SFAMDRPLNVKNLDATLWSIGNAAGL" mobile_element 28438967..28446988 /note="source:INTACT712_F308_scaffold_5-int 1 8022" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 28448981..28449132 /note="source:CACAO_Mutator_E592_scaffold_3 17254 17407" /mobile_element_type="transposon:TIR/Mutator" mobile_element 28451744..28451797 /note="source:CACAO_M_E22186_F143_scaffold_3 9981 10034" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28454377..28457105 /note="source:CACAO_M_E44030_F73_scaffold_5 1 2729" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(28462542..28464098) /locus_tag="TCM_024773" /note="dbxref CacaoGD:Thecc1EG024773" mRNA complement(join(28462542..28463190,28463317..28463378, 28463489..28463544,28463702..28464098)) /locus_tag="TCM_024773" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s05370.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005888t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s05370.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6280t2" mRNA complement(join(28462569..28463190,28463317..28463378, 28463489..28463544,28463702..28463847,28463955..28464038)) /locus_tag="TCM_024773" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s05370.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005888t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s05370.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6280t2; alternateUTRof:Thecc1EG024773t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6280t2" mRNA complement(join(28462569..28463190,28463317..28463378, 28463702..28464031)) /locus_tag="TCM_024773" /product="Uncharacterized protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s05370.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s05370.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6280t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6280t2" mRNA complement(join(28462569..28463190,28463317..28463378, 28463489..28463562,28463704..28463835)) /locus_tag="TCM_024773" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s05370.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s05370.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1314t1_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6280t2" CDS complement(join(28462755..28463190,28463317..28463378, 28463489..28463544,28463702..28463846)) /locus_tag="TCM_024773" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG005888t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY09347.1" /db_xref="Phytozome:POPTR_0006s05370.1" /db_xref="TAIR:AT3G52110.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HA66" /translation="MEHESIDWNNIESIFEEDDTYENINAPKWVDLSAPCETMDDEAW FCKPGCKHPKSAEDYLKSKHYSKVKLLRSMTISEILPFRDRTRREAKAKNGEKGSKSA ENVNEDNENWNPNLSTPPLRAKTMPKKLAKKSSMEEKTQLDDLRDNSAKSDKKRGLRS TFSARNLVAGREILSQITEFCAELKKMARKGSKKGAPEKAPNGVLGELKERVRERERM PLLVVKERKSKEQV" CDS complement(join(28462755..28463190,28463317..28463378, 28463489..28463544,28463702..28463846)) /locus_tag="TCM_024773" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005888t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY09348.1" /db_xref="Phytozome:POPTR_0006s05370.1" /db_xref="TAIR:AT3G52110.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HA66" /translation="MEHESIDWNNIESIFEEDDTYENINAPKWVDLSAPCETMDDEAW FCKPGCKHPKSAEDYLKSKHYSKVKLLRSMTISEILPFRDRTRREAKAKNGEKGSKSA ENVNEDNENWNPNLSTPPLRAKTMPKKLAKKSSMEEKTQLDDLRDNSAKSDKKRGLRS TFSARNLVAGREILSQITEFCAELKKMARKGSKKGAPEKAPNGVLGELKERVRERERM PLLVVKERKSKEQV" CDS complement(join(28462755..28463190,28463317..28463378, 28463489..28463562,28463704..28463794)) /locus_tag="TCM_024773" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY09349.1" /db_xref="Phytozome:POPTR_0006s05370.1" /translation="MTHTRISMRLNGLIFLLHVKLWMMKPGSANLFVIHGGCKHPKSA EDYLKSKHYSKVKLLRSMTISEILPFRDRTRREAKAKNGEKGSKSAENVNEDNENWNP NLSTPPLRAKTMPKKLAKKSSMEEKTQLDDLRDNSAKSDKKRGLRSTFSARNLVAGRE ILSQITEFCAELKKMARKGSKKGAPEKAPNGVLGELKERVRERERMPLLVVKERKSKE QV" CDS complement(join(28462755..28463190,28463317..28463378, 28463702..28463794)) /locus_tag="TCM_024773" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY09350.1" /db_xref="Phytozome:POPTR_0006s05370.1" /translation="MTHTRISMRLNGLIFLLHVKLWMMKPGSANLVKLLRSMTISEIL PFRDRTRREAKAKNGEKGSKSAENVNEDNENWNPNLSTPPLRAKTMPKKLAKKSSMEE KTQLDDLRDNSAKSDKKRGLRSTFSARNLVAGREILSQITEFCAELKKMARKGSKKGA PEKAPNGVLGELKERVRERERMPLLVVKERKSKEQV" mobile_element 28465567..28465654 /note="source:INTACT296_F13_scaffold_9-int 13158 13246" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28470395..28470560) /note="source:CACAO_M_S_E4911_F76_scaffold_1 2489 2654" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28470769..28473873 /note="source:CACAO_M_E44031_F15_scaffold_5 1 3105" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28473729..28473896) /note="source:INTACT407F_F356_scaffold_4-int 5152 5318" /mobile_element_type="retrotransposon:LTR/Copia" gene 28473819..28476149 /locus_tag="TCM_024774" /note="dbxref CacaoGD:Thecc1EG024774" mRNA join(28473819..28473975,28474054..28474107, 28474402..28474520,28475438..28476149) /locus_tag="TCM_024774" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(28473843..28473975,28474054..28474107, 28474402..28474520,28475438..28475599) /locus_tag="TCM_024774" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09351.1" /translation="MGLREVSGRDTLGAKANSVNIWRPVVDRFESRLAGWKANFLSSE VKNELDKIQRRFLWGASEGLSFIVGDGHNISFWHDGWLEDSPFKIGFPHILHLLKINM TTGWGDSNLAELLAIKEAFLLFAASPWVNSYVLIIESDSSNVVRWILKPYDSP" mobile_element complement(28476157..28476769) /note="source:CACAO_M_S_E4911_F76_scaffold_1 1913 2503" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28477357..28478817) /note="source:INTACT296_F13_scaffold_9-int 12948 14445" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28478763..28478850 /note="source:CACAO_M_E22186_F143_scaffold_3 9951 10025" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28480294..28480363) /note="source:CACAO_M_S_E4911_F76_scaffold_1 1235 1303" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28480800..28481112 /note="source:CACAO_PIF_E119_scaffold_3 1300 1587" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 28481125..28481206 /note="source:CACAO_PIF_E119_scaffold_3 1661 1742" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 28484409..28484611 /note="source:CACAO_PIF_E119_scaffold_3 2271 2540" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 28488418..28495718 /locus_tag="TCM_024775" /note="dbxref CacaoGD:Thecc1EG024775" mRNA join(28488418..28488880,28489459..28489581, 28490953..28490992,28491118..28491191,28491366..28491467, 28492892..28492969,28493145..28493303,28493793..28493918, 28494508..28494600,28494823..28494909,28495035..28495718) /locus_tag="TCM_024775" /product="Lysophosphatidyl acyltransferase 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033326001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040671t1" /inference="similar to AA sequence:Phytozome:Glyma10g12560.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00561t00001_C1" CDS join(28488800..28488880,28489459..28489581, 28490953..28490992,28491118..28491191,28491366..28491467, 28492892..28492969,28493145..28493303,28493793..28493918, 28494508..28494600,28494823..28494909,28495035..28495277) /locus_tag="TCM_024775" /note="paralog of Thecc1EG040671t1" /codon_start=1 /product="Lysophosphatidyl acyltransferase 2" /protein_id="EOY09352.1" /db_xref="Phytozome:Glyma10g12560.1" /db_xref="TAIR:AT3G57650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LG50" /translation="MAIAAAAVIVPLGLLFFISGLVVNLIQALCFVLIRPLSKNTYRK INRVVAELLWLELVWLVDWWAGVKIKVFMDPESFNLMGKEHALVVANHRSDIDWLVGW LLAQRSGCLGSALAVMKKSSKFLPVYVVVICLKFQLSIVIGWSMWFSEYLFLERSWAK DENTLKAGLQRLKDFPRPFWLAFFVEGTRFTQAKFLAAQEYAASQGLPIPRNVLIPRT KGFVSAVSHMRSFVPAIYDMTVAIPKSSPSPTMLRLFKGQPSVVHVHIKRCLMKELPE TDEAVAQWCKDMFVEKDKLLDKHIAEDTFSDQPMQDLGRPIKSLLVVASWACLMAYGA LKFLQCSSLLSSWKGIAFFLVGLAIVTILMHILILFSQSERSTPAKVAPGKPKNDGET SEARRDKQQ" gene 28497460..28498532 /locus_tag="TCM_024776" /note="dbxref CacaoGD:Thecc1EG024776" mRNA 28497460..28498532 /locus_tag="TCM_024776" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.38 coverage" CDS 28497647..28498171 /locus_tag="TCM_024776" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09353.1" /translation="MVIVYSFCGKHSGRYFLGEYQRGFDLFRIVVDVFVPCRSQKDEY NFAFVRYRHEREMLLAVETGNGMMFSSWRLRANRADTDERNVPGNGRSSAMNLVGNLD RSFKNVVVGDTVIKDEPWSLKRHMLATKNVHEVEDRVEKKLMQNNNDKEGVVKLNPNA KNECEVGDWVEKKN" mobile_element 28498985..28505235 /note="source:CACAO_PIF_E119_scaffold_3 6780 13030" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(28505205..28505238) /note="source:CACAO_on_E565_scaffold_5 11979 12012" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(28505232..28505346) /note="source:CACAO_on_E565_scaffold_5 11641 11756" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(28505342..28505375) /note="source:CACAO_on_E565_scaffold_5 3026 3059" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(28505373..28505511) /note="source:CACAO_on_E565_scaffold_5 2320 2458" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(28505496..28505607) /note="source:CACAO_PIF_E62_scaffold_2 13935 14050" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(28505608..28505653) /note="source:CACAO_Mutator_E1320_scaffold_6 2002 2048" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(28505654..28506593) /note="source:CACAO_PIF_E62_scaffold_2 12957 13934" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(28505753..28507172) /note="source:CACAO_Mutator_E592_scaffold_3 9609 11040" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(28506630..28507275) /note="source:CACAO_PIF_E62_scaffold_2 11770 12958" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(28507276..28507613) /note="source:CACAO_Mutator_E592_scaffold_3 8827 9164" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(28507616..28507945) /note="source:CACAO_Mutator_E592_scaffold_3 18935 19242" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(28508024..28508070) /note="source:CACAO_PIF_E62_scaffold_2 16576 16623" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 28508145..28508192 /note="source:CACAO_PIF_E62_scaffold_2 16575 16623" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(28508305..28508624) /note="source:CACAO_PIF_E62_scaffold_2 16126 16466" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(28508620..28508700) /note="source:CACAO_PIF_E62_scaffold_2 13862 13942" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(28508868..28514056) /note="source:CACAO_PIF_E62_scaffold_2 7096 12308" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 28514743..28515907 /note="source:scaffold_1_CACTA_0016 7755 8937" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28515906..28516750 /note="source:CACAO_MITE135_scaffold_9 1 836" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(28516748..28517427) /note="source:CACAO_M_E56681_F47_scaffold_8 302 982" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 28517455..28518890 /note="source:CACAO_M_E44036_F9_scaffold_5 1 1436" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28518891..28518984 /note="source:CACAO_M_E22662_F47_scaffold_3 1915 1971" /mobile_element_type="retrotransposon:LTR/Copia" gene 28519216..28523009 /locus_tag="TCM_024781" /note="dbxref CacaoGD:Thecc1EG024781" mRNA join(28519216..28519366,28519460..28519535, 28519995..28520108,28522003..28523009) /locus_tag="TCM_024781" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS join(28519259..28519366,28519460..28519535, 28519995..28520108,28522003..28522058) /locus_tag="TCM_024781" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09354.1" /translation="MESDDKSGGLILMWHEDYFSVEDHLCHKNYILAMDKIMGRYDIW WCMGGDFNYVCGDDERIVEIQELEMQWQQDGVESGVKEDVMRKRIELWLLYRDEEFFV NTTYGLFKVGNGRSS" gene 28526337..28547496 /locus_tag="TCM_024782" /note="dbxref CacaoGD:Thecc1EG024782" mRNA join(28526337..28526626,28526784..28526953, 28527292..28527451,28527530..28527829,28529195..28529467, 28529569..28529739,28530743..28530908,28532211..28532398, 28533675..28533938,28534986..28535074,28535302..28535449, 28535561..28535779,28536023..28536382,28536477..28536621, 28537156..28537364,28538453..28538655,28539728..28539926, 28540012..28540271,28541525..28541665,28544866..28545284, 28545366..28545670,28546314..28547496) /locus_tag="TCM_024782" /product="Nuclear RNA polymerase A1, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033327001" /inference="similar to AA sequence:ricco:27810.m000650" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1562t4" mRNA join(28526337..28526626,28526784..28526953, 28527292..28527451,28527530..28527829,28529195..28529467, 28529569..28529739,28530743..28530908,28532211..28532398, 28533675..28533938,28534986..28535074,28535302..28535449, 28535561..28535779,28536023..28536382,28536477..28536621, 28537165..28537364,28538453..28538655,28539728..28539926, 28540012..28540271,28541525..28541665,28544866..28545670, 28546314..28547496) /locus_tag="TCM_024782" /product="Nuclear RNA polymerase A1, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033327001" /inference="similar to AA sequence:ricco:27810.m000650" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:PASA:2:TSA:puevd3b023966t1a2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc815t1" CDS join(28526609..28526626,28526784..28526953, 28527292..28527451,28527530..28527829,28529195..28529467, 28529569..28529739,28530743..28530908,28532211..28532398, 28533675..28533938,28534986..28535074,28535302..28535449, 28535561..28535779,28536023..28536382,28536477..28536621, 28537156..28537364,28538453..28538655,28539728..28539926, 28540012..28540271,28541525..28541665,28544866..28545284, 28545366..28545670,28546314..28546904) /locus_tag="TCM_024782" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:27810.m000650" /codon_start=1 /product="Nuclear RNA polymerase A1, putative isoform 1" /protein_id="EOY09355.1" /db_xref="TAIR:AT3G57660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SVY0" /translation="MAQITEGATDSVEAVRFNFMTTEEVRKHSFLKVTNANLLDLMDR PMPGGLYDAVLGPLEDRTPCKSCGLLKLHCPGHCGHIDLVSPIYNPLLFNFLHTLLQR ICFFCYHFRAEKTEVERCVSQLKLIGNGDIVGAKRLDSDSADASSYSDYNEGSQESGS IVHNSEAVKPKEWTSLQLMEAMSVLNNFLKLKYNKCKNCDAKNPNITKPVFGWLHMNG MLGAQMRENVIRGCKMVDTFSDEAGSGLEDADDVSSSGNGVDIAEMDTSEIGFTGSEG NGAKARKKKAQVPLEFMKQKNLFSGPLLPSEVKKITKLLWENEVELCSIISDIQQQGF GKKVGYSMFFLETILVPPIKFRAPTKGGDSVMEHPQTVLLSKVLQANISLGNAYTNNL QSSKAVVRLWMDLQQSVNLLFDSKTAMSQGRDVSSGICQLLEKKEGMFRQKMMGKRVN FACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLREAIINGSEFHPGATH YVDKLSTKRLPPSQKARISISRKLPSSRGAIAQPGKNLDYEFEGKIVLRHLQDGDVVL VNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEINVHFPQDEISRAE AYNIVNANNQYVRPSNGEPIRALIQDHIVSAVLLTKRDTFLSRDEFNQLLYSSGVSSL AQNSFSGKPGQKVFVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSHITRGRPPFTV GKTAKIPRDFFRNRRNKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEKILIYRNDL VRGVIDKAQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDDLLIM EDKDIERKKQLEDCEKKVTEAHYELFGVKVNSETAPTELQLEIERTIRRDGETALTAL DRKMISVLNENSSKGVLTELLSEGLVKSMGENCISLMTTSGAKGSKVNFQQISSFLGQ QELEGKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYFHCMAGREGLV DTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDVHQTSFIAK FEALALNQDMMSEKLCSQLGEPDDSDKILPDGLRSKAEQFIREEIKKYQHQKIKPKDF LNLLKLKFLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQE ILMTASIDIRTPVMTCPLHKGKTKEDALCLANKMKKITVADILESMEVSVAPFAVDNG DICSIYKLKMMLGKPDKYFENSDITVKDCEHILKVVFLRELEDAIQNHLVLLSKISGI KKFMPDSQRNASNEMDEDVSEGRSRETKNDDDDDDDDADDEERAEDLGASLAALESEI DMSEDETGTIQINMIGSDNGKDEISQSSPNLENRSNPKSREEKTGSEPKRKKMKAKFV RKESDRAIFNAIRGLCFEVHFKLKNEPHILLAQIAEKTAKKVYIQSFGKIDQCRVTDC SENQVFYYGEDPKKRKSPSDKEKIQALHTTGVDFGAFWKMEDHIDVRYLYSNSIHAML NTYGVEAARETIIREISHVFTSYGIAVNIRHLTLIADFMTHSGRYRPMSRLGGIAESI SPFSKMSFETASKFIVEAAKHGLVDNLETPSSRICLGLPVKMGTGSFDLMQKVEI" CDS join(28526609..28526626,28526784..28526953, 28527292..28527451,28527530..28527829,28529195..28529467, 28529569..28529739,28530743..28530908,28532211..28532398, 28533675..28533938,28534986..28535074,28535302..28535449, 28535561..28535779,28536023..28536382,28536477..28536621, 28537165..28537364,28538453..28538655,28539728..28539926, 28540012..28540271,28541525..28541665,28544866..28545670, 28546314..28546904) /locus_tag="TCM_024782" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:27810.m000650" /codon_start=1 /product="Nuclear RNA polymerase A1, putative isoform 2" /protein_id="EOY09356.1" /db_xref="TAIR:AT3G57660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SVY0" /translation="MAQITEGATDSVEAVRFNFMTTEEVRKHSFLKVTNANLLDLMDR PMPGGLYDAVLGPLEDRTPCKSCGLLKLHCPGHCGHIDLVSPIYNPLLFNFLHTLLQR ICFFCYHFRAEKTEVERCVSQLKLIGNGDIVGAKRLDSDSADASSYSDYNEGSQESGS IVHNSEAVKPKEWTSLQLMEAMSVLNNFLKLKYNKCKNCDAKNPNITKPVFGWLHMNG MLGAQMRENVIRGCKMVDTFSDEAGSGLEDADDVSSSGNGVDIAEMDTSEIGFTGSEG NGAKARKKKAQVPLEFMKQKNLFSGPLLPSEVKKITKLLWENEVELCSIISDIQQQGF GKKVGYSMFFLETILVPPIKFRAPTKGGDSVMEHPQTVLLSKVLQANISLGNAYTNNL QSSKAVVRLWMDLQQSVNLLFDSKTAMSQGRDVSSGICQLLEKKEGMFRQKMMGKRVN FACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLREAIINGSEFHPGATH YVDKLSTKRLPPSQKARISISRKLPSSRGAIAQPGKNLDYEFEGKIVLRHLQDGDVVL VNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEINVHFPQDEISRAE AYNIVNANNQYVRPSNGEPIRALIQDHIVSAVLLTKRDTFLSRDEFNQLLYSSGVSSL AQNSFSGKPGQKVFVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSHITRGRPPFTV GKTAKIPRDFFRNRRNKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEKILIYRNDL VRGVIDKAQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDDLLIM EDKDIERKKQLEDCEKKVTEAHYELFGVKVNSETELQLEIERTIRRDGETALTALDRK MISVLNENSSKGVLTELLSEGLVKSMGENCISLMTTSGAKGSKVNFQQISSFLGQQEL EGKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTA VKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDVHQTSFIAKFEA LALNQDMMSEKLCSQLGEPDDSDKILPDGLRSKAEQFIREEIKKYQHQKIKPKDFLNL LKLKFLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILM TASIDIRTPVMTCPLHKGKTKEDALCLANKMKKITVADILESMEVSVAPFAVDNGDIC SIYKLKMMLGKPDKYFENSDITVKDCEHILKVVFLRELEDAIQNHLVLLSKISGIKKF MPDSQRNASNEMDEDVSEGRSRETKNDDDDDDDDADDEERAEDLGLDAQKQKQQTTDE MDYEDDSEVEQNEGASLAALESEIDMSEDETGTIQINMIGSDNGKDEISQSSPNLENR SNPKSREEKTGSEPKRKKMKAKFVRKESDRAIFNAIRGLCFEVHFKLKNEPHILLAQI AEKTAKKVYIQSFGKIDQCRVTDCSENQVFYYGEDPKKRKSPSDKEKIQALHTTGVDF GAFWKMEDHIDVRYLYSNSIHAMLNTYGVEAARETIIREISHVFTSYGIAVNIRHLTL IADFMTHSGRYRPMSRLGGIAESISPFSKMSFETASKFIVEAAKHGLVDNLETPSSRI CLGLPVKMGTGSFDLMQKVEI" mRNA join(28529384..28529467,28529569..28529739, 28530743..28530908,28532211..28532398,28533675..28533938, 28534986..28535074,28535302..28535449,28535561..28535779, 28536023..28536382,28536477..28536621,28537156..28537364, 28538453..28538655,28539728..28539926,28540012..28540271, 28541525..28541665,28544866..28545670,28546314..28547031, 28547218..28547383) /locus_tag="TCM_024782" /product="Nuclear RNA polymerase A1 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033327001" /inference="similar to AA sequence:ricco:27810.m000650" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc815t1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc815t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1562t4" mRNA join(28529384..28529467,28529569..28529739, 28530743..28530908,28532211..28532398,28533675..28533938, 28534986..28535074,28535302..28535449,28535561..28535779, 28536023..28536382,28536477..28536621,28537165..28537364, 28538453..28538655,28539728..28539926,28540012..28540271, 28541525..28541665,28544866..28545670,28546314..28547031, 28547218..28547383) /locus_tag="TCM_024782" /product="Nuclear RNA polymerase A1 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033327001" /inference="similar to AA sequence:ricco:27810.m000650" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc828t2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc815t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1562t4" CDS join(28529423..28529467,28529569..28529739, 28530743..28530908,28532211..28532398,28533675..28533938, 28534986..28535074,28535302..28535449,28535561..28535779, 28536023..28536382,28536477..28536621,28537156..28537364, 28538453..28538655,28539728..28539926,28540012..28540271, 28541525..28541665,28544866..28545670,28546314..28546904) /locus_tag="TCM_024782" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:27810.m000650" /codon_start=1 /product="Nuclear RNA polymerase A1 isoform 3" /protein_id="EOY09357.1" /db_xref="TAIR:AT3G57660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SVY0" /translation="MKQKNLFSGPLLPSEVKKITKLLWENEVELCSIISDIQQQGFGK KVGYSMFFLETILVPPIKFRAPTKGGDSVMEHPQTVLLSKVLQANISLGNAYTNNLQS SKAVVRLWMDLQQSVNLLFDSKTAMSQGRDVSSGICQLLEKKEGMFRQKMMGKRVNFA CRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLREAIINGSEFHPGATHYV DKLSTKRLPPSQKARISISRKLPSSRGAIAQPGKNLDYEFEGKIVLRHLQDGDVVLVN RQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEINVHFPQDEISRAEAY NIVNANNQYVRPSNGEPIRALIQDHIVSAVLLTKRDTFLSRDEFNQLLYSSGVSSLAQ NSFSGKPGQKVFVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSHITRGRPPFTVGK TAKIPRDFFRNRRNKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEKILIYRNDLVR GVIDKAQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDDLLIMED KDIERKKQLEDCEKKVTEAHYELFGVKVNSETAPTELQLEIERTIRRDGETALTALDR KMISVLNENSSKGVLTELLSEGLVKSMGENCISLMTTSGAKGSKVNFQQISSFLGQQE LEGKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYFHCMAGREGLVDT AVKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDVHQTSFIAKFE ALALNQDMMSEKLCSQLGEPDDSDKILPDGLRSKAEQFIREEIKKYQHQKIKPKDFLN LLKLKFLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEIL MTASIDIRTPVMTCPLHKGKTKEDALCLANKMKKITVADILESMEVSVAPFAVDNGDI CSIYKLKMMLGKPDKYFENSDITVKDCEHILKVVFLRELEDAIQNHLVLLSKISGIKK FMPDSQRNASNEMDEDVSEGRSRETKNDDDDDDDDADDEERAEDLGLDAQKQKQQTTD EMDYEDDSEVEQNEGASLAALESEIDMSEDETGTIQINMIGSDNGKDEISQSSPNLEN RSNPKSREEKTGSEPKRKKMKAKFVRKESDRAIFNAIRGLCFEVHFKLKNEPHILLAQ IAEKTAKKVYIQSFGKIDQCRVTDCSENQVFYYGEDPKKRKSPSDKEKIQALHTTGVD FGAFWKMEDHIDVRYLYSNSIHAMLNTYGVEAARETIIREISHVFTSYGIAVNIRHLT LIADFMTHSGRYRPMSRLGGIAESISPFSKMSFETASKFIVEAAKHGLVDNLETPSSR ICLGLPVKMGTGSFDLMQKVEI" CDS join(28529423..28529467,28529569..28529739, 28530743..28530908,28532211..28532398,28533675..28533938, 28534986..28535074,28535302..28535449,28535561..28535779, 28536023..28536382,28536477..28536621,28537165..28537364, 28538453..28538655,28539728..28539926,28540012..28540271, 28541525..28541665,28544866..28545670,28546314..28546904) /locus_tag="TCM_024782" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:27810.m000650" /codon_start=1 /product="Nuclear RNA polymerase A1 isoform 4" /protein_id="EOY09358.1" /db_xref="TAIR:AT3G57660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SVY0" /translation="MKQKNLFSGPLLPSEVKKITKLLWENEVELCSIISDIQQQGFGK KVGYSMFFLETILVPPIKFRAPTKGGDSVMEHPQTVLLSKVLQANISLGNAYTNNLQS SKAVVRLWMDLQQSVNLLFDSKTAMSQGRDVSSGICQLLEKKEGMFRQKMMGKRVNFA CRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLREAIINGSEFHPGATHYV DKLSTKRLPPSQKARISISRKLPSSRGAIAQPGKNLDYEFEGKIVLRHLQDGDVVLVN RQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEINVHFPQDEISRAEAY NIVNANNQYVRPSNGEPIRALIQDHIVSAVLLTKRDTFLSRDEFNQLLYSSGVSSLAQ NSFSGKPGQKVFVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSHITRGRPPFTVGK TAKIPRDFFRNRRNKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEKILIYRNDLVR GVIDKAQFADYGLVHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDDLLIMED KDIERKKQLEDCEKKVTEAHYELFGVKVNSETELQLEIERTIRRDGETALTALDRKMI SVLNENSSKGVLTELLSEGLVKSMGENCISLMTTSGAKGSKVNFQQISSFLGQQELEG KRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVK TSRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDVHQTSFIAKFEALA LNQDMMSEKLCSQLGEPDDSDKILPDGLRSKAEQFIREEIKKYQHQKIKPKDFLNLLK LKFLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA SIDIRTPVMTCPLHKGKTKEDALCLANKMKKITVADILESMEVSVAPFAVDNGDICSI YKLKMMLGKPDKYFENSDITVKDCEHILKVVFLRELEDAIQNHLVLLSKISGIKKFMP DSQRNASNEMDEDVSEGRSRETKNDDDDDDDDADDEERAEDLGLDAQKQKQQTTDEMD YEDDSEVEQNEGASLAALESEIDMSEDETGTIQINMIGSDNGKDEISQSSPNLENRSN PKSREEKTGSEPKRKKMKAKFVRKESDRAIFNAIRGLCFEVHFKLKNEPHILLAQIAE KTAKKVYIQSFGKIDQCRVTDCSENQVFYYGEDPKKRKSPSDKEKIQALHTTGVDFGA FWKMEDHIDVRYLYSNSIHAMLNTYGVEAARETIIREISHVFTSYGIAVNIRHLTLIA DFMTHSGRYRPMSRLGGIAESISPFSKMSFETASKFIVEAAKHGLVDNLETPSSRICL GLPVKMGTGSFDLMQKVEI" mobile_element 28536728..28536801 /note="source:INTACT296_F13_scaffold_9-int 13162 13237" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(28547274..28552077) /locus_tag="TCM_024783" /note="dbxref CacaoGD:Thecc1EG024783" mRNA complement(join(28547274..28547827,28548614..28548676, 28548788..28548867,28548987..28549081,28549171..28549287, 28549951..28550028,28550567..28550636,28550748..28550860, 28550994..28551095,28551679..28551795,28551899..28552005)) /locus_tag="TCM_024783" /product="Transducin/WD40 repeat-like superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s05320.1" /inference="similar to AA sequence:Phytozome:Glyma15g09170.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6437t2; inference alignment:Newbler:10:TSA:cgbaP1_g04003t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc687t11" mRNA complement(join(28547274..28547827,28548614..28548673, 28548788..28548870,28548987..28549081,28549171..28549287, 28549951..28550028,28550567..28550636,28550748..28550860, 28550994..28551095,28551679..28551795,28551899..28552005)) /locus_tag="TCM_024783" /product="Transducin/WD40 repeat-like superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s05320.1" /inference="similar to AA sequence:Phytozome:Glyma15g09170.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6437t1; inference alignment:Newbler:10:TSA:cgbaP1_g04003t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc687t11" mRNA complement(join(28547373..28547827,28548614..28548673, 28548788..28548867,28548987..28549081,28549171..28549287, 28549951..28550028,28550567..28550636,28550748..28550817, 28550994..28551018)) /locus_tag="TCM_024783" /product="Transducin/WD40 repeat-like superfamily protein isoform 7" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s05320.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05320.1" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc692t6; inference alignment:Newbler:10:TSA:cgbaP1_g04003t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc687t11" mRNA complement(join(28547500..28547827,28548614..28548673, 28548788..28548867,28548987..28549081,28549171..28549287, 28549951..28550028,28550567..28550636,28550748..28550860, 28550994..28551095,28551679..28551795,28551899..28552077)) /locus_tag="TCM_024783" /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s05320.1" /inference="similar to AA sequence:Phytozome:Glyma15g09170.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g04003t00001" CDS complement(join(28547700..28547827,28548614..28548673, 28548788..28548867,28548987..28549081,28549171..28549287, 28549951..28550028,28550567..28550636,28550748..28550860, 28550994..28551095,28551679..28551786)) /locus_tag="TCM_024783" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /protein_id="EOY09359.1" /db_xref="Phytozome:Glyma15g09170.1" /db_xref="TAIR:AT3G18140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9II51" /translation="MTQPSVILATASYDHTIRFWEAKSGRCYRTIQYPDSQVNRLEIT PDKRYLAAAGNPHIRLFDINSNSPQPVMSYDSHTNNVMAVGFQCDGNWMYSGSEDGTV KIWDLRAPGCQREYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELVPE VDTAVRSLTVMWDGSLVVAANNHGTCYVWRLLRGNQTMTNFEPLHKLQAHNGYILKCL LSPEFCEPHRYLATASSDHTVKIWNVDGFTLEKTLIGHQRWVWDCVFSVDGAYLITAS SDTTAKLWSMSSGEEIKTYQGHHKATVCCALHDGAEPSPC" CDS complement(join(28547700..28547827,28548614..28548676, 28548788..28548867,28548987..28549081,28549171..28549287, 28549951..28550028,28550567..28550636,28550748..28550860, 28550994..28551095,28551679..28551786)) /locus_tag="TCM_024783" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 4" /protein_id="EOY09362.1" /db_xref="Phytozome:Glyma15g09170.1" /db_xref="TAIR:AT3G18140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9II51" /translation="MTQPSVILATASYDHTIRFWEAKSGRCYRTIQYPDSQVNRLEIT PDKRYLAAAGNPHIRLFDINSNSPQPVMSYDSHTNNVMAVGFQCDGNWMYSGSEDGTV KIWDLRAPGCQREYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELVPE VDTAVRSLTVMWDGSLVVAANNHGTCYVWRLLRGNQTMTNFEPLHKLQAHNGYILKCL LSPEFCEPHRYLATASSDHTVKIWNVDGFTLEKTLIVGHQRWVWDCVFSVDGAYLITA SSDTTAKLWSMSSGEEIKTYQGHHKATVCCALHDGAEPSPC" CDS complement(join(28547700..28547827,28548614..28548673, 28548788..28548870,28548987..28549081,28549171..28549287, 28549951..28550028,28550567..28550636,28550748..28550860, 28550994..28551095,28551679..28551786)) /locus_tag="TCM_024783" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 3" /protein_id="EOY09361.1" /db_xref="Phytozome:Glyma15g09170.1" /db_xref="TAIR:AT3G18140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9II51" /translation="MTQPSVILATASYDHTIRFWEAKSGRCYRTIQYPDSQVNRLEIT PDKRYLAAAGNPHIRLFDINSNSPQPVMSYDSHTNNVMAVGFQCDGNWMYSGSEDGTV KIWDLRAPGCQREYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELVPE VDTAVRSLTVMWDGSLVVAANNHGTCYVWRLLRGNQTMTNFEPLHKLQAHNGYILKCL LSPEFCEPHSRYLATASSDHTVKIWNVDGFTLEKTLIGHQRWVWDCVFSVDGAYLITA SSDTTAKLWSMSSGEEIKTYQGHHKATVCCALHDGAEPSPC" CDS complement(join(28547700..28547827,28548614..28548673, 28548788..28548867,28548987..28549081,28549171..28549287, 28549951..28550028,28550567..28550636,28550748..28550794)) /locus_tag="TCM_024783" /note="encoded by transcript variant 7; alternatively spliced" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 7" /protein_id="EOY09365.1" /db_xref="Phytozome:POPTR_0016s05320.1" /db_xref="TAIR:AT3G18140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9II51" /translation="MYSGSEDGTVKIWDLRAPGCQREYESRAAVNTVVLHPNQTELIS GDQNGNIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNHGTCYVWRLLRG NQTMTNFEPLHKLQAHNGYILKCLLSPEFCEPHRYLATASSDHTVKIWNVDGFTLEKT LIGHQRWVWDCVFSVDGAYLITASSDTTAKLWSMSSGEEIKTYQGHHKATVCCALHDG AEPSPC" mRNA complement(join(<28547738..28547827,28548614..28548673, 28548788..28548867,28548987..28549081,28549171..28549287, 28549951..28550028,28550567..28550636,28550748..28550860, 28550994..28551095,28551679..28551856)) /locus_tag="TCM_024783" /product="Transducin/WD40 repeat-like superfamily protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s05320.1" /inference="similar to AA sequence:Phytozome:Glyma15g09170.1" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc617t28; inference alignment:Newbler:10:TSA:cgbaP1_g04003t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc687t11" CDS complement(join(<28547739..28547827,28548614..28548673, 28548788..28548867,28548987..28549081,28549171..28549287, 28549951..28550028,28550567..28550636,28550748..28550860, 28550994..28551095,28551679..28551786)) /locus_tag="TCM_024783" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 5" /protein_id="EOY09363.1" /db_xref="Phytozome:Glyma15g09170.1" /db_xref="TAIR:AT3G18140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9II51" /translation="MTQPSVILATASYDHTIRFWEAKSGRCYRTIQYPDSQVNRLEIT PDKRYLAAAGNPHIRLFDINSNSPQPVMSYDSHTNNVMAVGFQCDGNWMYSGSEDGTV KIWDLRAPGCQREYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELVPE VDTAVRSLTVMWDGSLVVAANNHGTCYVWRLLRGNQTMTNFEPLHKLQAHNGYILKCL LSPEFCEPHRYLATASSDHTVKIWNVDGFTLEKTLIGHQRWVWDCVFSVDGAYLITAS SDTTAKLWSMSSGEEIKTYQGHHKATVC" mRNA complement(join(<28547802..28547827,28548614..28548673, 28548788..28548867,28548987..28549081,28549171..28549287, 28549951..28550028,28550567..28550636,28550748..28550860, 28550994..28551095,28551679..28551795, 28551887..>28551910)) /locus_tag="TCM_024783" /product="Transducin/WD40 repeat-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s05320.1" /inference="similar to AA sequence:Phytozome:Glyma15g09170.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc687t11; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc687t11; inference alignment:Newbler:10:TSA:cgbaP1_g04003t00001" mRNA complement(join(<28547802..28547827,28548614..28548673, 28548788..28548867,28548987..28549081,28549171..28549287, 28549951..28550028,28550567..28550636,28550748..28551095, 28551679..28551795,28551887..28551910)) /locus_tag="TCM_024783" /product="Transducin/WD40 repeat-like superfamily protein isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s05320.1" /inference="similar to AA sequence:Phytozome:Glyma15g09170.1" /note="transcript variant 6; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc687t2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc687t11; inference alignment:Newbler:10:TSA:cgbaP1_g04003t00001" CDS complement(join(<28547802..28547827,28548614..28548673, 28548788..28548867,28548987..28549081,28549171..28549287, 28549951..28550028,28550567..28550636,28550748..28550860, 28550994..28551095,28551679..28551795, 28551887..>28551910)) /locus_tag="TCM_024783" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 2" /protein_id="EOY09360.1" /db_xref="Phytozome:Glyma15g09170.1" /db_xref="TAIR:AT3G18140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9II51" /translation="HDPPVIKLEIKMTQPSVILATASYDHTIRFWEAKSGRCYRTIQY PDSQVNRLEITPDKRYLAAAGNPHIRLFDINSNSPQPVMSYDSHTNNVMAVGFQCDGN WMYSGSEDGTVKIWDLRAPGCQREYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLT ANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNHGTCYVWRLLRGNQTMTNFEPLHKL QAHNGYILKCLLSPEFCEPHRYLATASSDHTVKIWNVDGFTLEKTLIGHQRWVWDCVF SVDGAYLITASSDTTAKL" CDS complement(join(<28547802..28547827,28548614..28548673, 28548788..28548867,28548987..28549081,28549171..28549287, 28549951..28550028,28550567..28550636,28550748..28550857)) /locus_tag="TCM_024783" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 6" /protein_id="EOY09364.1" /db_xref="Phytozome:Glyma15g09170.1" /db_xref="TAIR:AT3G18140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9II51" /translation="MSYDSHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPGCQRE YESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELVPEVDTAVRSLTVMWD GSLVVAANNHGTCYVWRLLRGNQTMTNFEPLHKLQAHNGYILKCLLSPEFCEPHRYLA TASSDHTVKIWNVDGFTLEKTLIGHQRWVWDCVFSVDGAYLITASSDTTAKL" mobile_element complement(28554232..28554978) /note="source:scaffold_5_CACTA_0615 1566 2286" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(28554976..28558428) /note="source:CACAO_M_E42691_F9_scaffold_5 6549 10017" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28558442..28560499) /note="source:scaffold_6_CACTA_0709 4048 6139" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(28560502..28560923) /note="source:CACAO_M_E49546_F9_scaffold_7 3527 3958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28560760..28560944 /note="source:INTACT85_F9_scaffold_4-int 9880 10071" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28561077..28563873) /note="source:CACAO_M_E69760_F9_scaffold_9 1 2792" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28567175..28568695 /note="source:CACAO_M_E14795_F60_scaffold_3 213 1713" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28572968..28574140 /note="source:scaffold_3_CACTA_0385 3729 4925" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(28578467..28578610) /note="source:CACAO_M_E3164_F106_scaffold_1 1034 1177" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(28583748..28584474) /note="source:scaffold_6_CACTA_0700 10107 10745" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28584452..28584477 /note="source:CACAO_on_SS_E135_scaffold_10 4767 4821" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(28584478..28584652) /note="source:scaffold_6_CACTA_0700 7288 7462" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28584653..28584984 /note="source:CACAO_on_SS_E135_scaffold_10 4822 5543" /mobile_element_type="transposon:TIR/Mutator" mobile_element 28584979..28585300 /note="source:scaffold_9_CACTA_0945 2424 2748" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28585337..28585922 /note="source:scaffold_9_CACTA_0945 2742 3327" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28586202..28587481 /note="source:scaffold_9_CACTA_0945 3324 4595" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28591068..28591186 /note="source:CACAO_M_E49289_F74_scaffold_6 2480 2594" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28591087..28591187) /note="source:CACAO_M_E73089_F74_scaffold_10 4910 5009" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28592070..28593458) /note="source:INTACT558_F9_scaffold_9-int 10580 12012" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28594004..28594046 /note="source:CACAO_on_S_E46_scaffold_2 205 248" /mobile_element_type="transposon:TIR/Mutator" gene 28596193..28597098 /locus_tag="TCM_024785" /note="dbxref CacaoGD:Thecc1EG024785" mRNA 28596193..28597098 /locus_tag="TCM_024785" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.56 coverage" CDS 28596334..28596690 /locus_tag="TCM_024785" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09366.1" /translation="MSFLSYIYWYRSNYVCLQLQPRRVASRHLLPPSVDLHQRSMSIN QFRHCSNLLLETCLVETFGFPQRTWIYTKFKSVTKNNKLRTGCHLLIQNKKLKKKTEE REREKTWGWSMQNIAA" mobile_element complement(28596942..28597436) /note="source:CACAO_on_E459_scaffold_2 2054 2549" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(28597538..28598749) /note="source:INTACT52F_F339_scaffold_1-int 9367 10566" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28599435..28599748) /note="source:CACAO_M_E70014_F74_scaffold_10 6837 7114" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28601778..28602177) /note="source:INTACT52F_F339_scaffold_1-int 6621 7020" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28602278..28602582 /note="source:INTACT1306F_F379_scaffold_7-int 2416 2720" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 28612980..28613834 /locus_tag="TCM_024787" /note="dbxref CacaoGD:Thecc1EG024787" mRNA join(28612980..28613046,28613334..28613403, 28613685..28613834) /locus_tag="TCM_024787" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete" CDS join(28613041..28613046,28613334..28613403, 28613685..28613815) /locus_tag="TCM_024787" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09367.1" /translation="MMSSASNFVPEKHPPERGNSLPLFGDPSKKVIPCWAAIGPTRRS VGAQIHYARPASGSPQGEIQNAPF" mobile_element complement(28621607..28621772) /note="source:scaffold_5_CACTA_0584 7145 7319" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28623573..28623614 /note="source:INTACT135F_F90_scaffold_2-int 12863 12904" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 28623831..28623915 /note="source:INTACT135F_F90_scaffold_2-int 13425 13999" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 28623916..28624378 /note="source:scaffold_9_CACTA_0932 3118 3612" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28628083..28628216 /note="source:scaffold_5_CACTA_0582 4814 4947" /mobile_element_type="transposon:TIR/CACTA" gene 28633831..28636649 /locus_tag="TCM_024788" /note="dbxref CacaoGD:Thecc1EG024788" mRNA join(28633831..28634572,28635581..28636040, 28636295..28636649) /locus_tag="TCM_024788" /product="C2H2-type zinc finger family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s05310.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040610t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05310.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc4128t2" CDS join(28633925..28634572,28635581..28636018) /locus_tag="TCM_024788" /note="paralog of Thecc1EG040610t1" /codon_start=1 /product="C2H2-type zinc finger family protein" /protein_id="EOY09368.1" /db_xref="Phytozome:POPTR_0016s05310.1" /db_xref="TAIR:AT3G57670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SVY1" /translation="MADYPYSNFFSGWFKFNPLQHYPPPNPPPQQPSSYTQNYFYSSN TTFMTNETNPFFHYQTSSSSPPSPPVREALPLLSLSPTRHDKDEEVQDDEDQDQEHSC TAMDVDKSKGKEEGRLLFTNSAGGASASAAEDETVTVALHIGLPSPSASELASVLSSS SEITDKDGDGDDSGYPVNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMH MWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYK RKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNG HAAYGIDGLEEDDEPASEVEQDNESMQ" mobile_element 28642457..28643329 /note="source:scaffold_6_CACTA_0699 12920 13791" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(28644632..28645250) /note="source:INTACT579_F10_scaffold_3-int 4084 4694" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 28645734..28647133 /note="source:INTACT700_F304_scaffold_7-int 2352 3558" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28646363..28651466) /note="source:CACAO_M_E3935_F390_scaffold_1 9583 14675" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28651464..28658923 /note="source:INTACT1427F_F390_scaffold_9-int 8014 15508" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28659090..28659591) /note="source:INTACT579_F10_scaffold_3-int 4144 4627" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 28660124..28660955 /note="source:INTACT700_F304_scaffold_7-int 17345 18190" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(28664849..28679103) /locus_tag="TCM_024794" /note="dbxref CacaoGD:Thecc1EG024794" mRNA complement(join(28664849..28664881,28677734..28678326, 28678561..28679103)) /locus_tag="TCM_024794" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044459t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.42 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc8673t1" mobile_element 28664856..28682590 /note="source:INTACT58_F125_scaffold_5-int 1 17735" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(28678016..28678326,28678561..28678780)) /locus_tag="TCM_024794" /note="paralog of Thecc1EG044459t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09369.1" /translation="MASSSAGPLNIYRNDYEIELQMRQIQQEKRDCLTQGHILTLPER VHLDLQQNDFTEMIGIWEQWRHAHWDNFQRMTTVEMDQHLKKKGDTECLPWSFLNGYI KKHMEDEQGLIAFAMAIYGLVVFPKVLGHVEVSVIDFFDQVTRSINPAPSILAETFKS LNFCRRKGEGRFIGCA" mobile_element complement(28683598..28683663) /note="source:CACAO_M_S_E66461_F76_scaffold_5 584 646" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28695025..28695456 /note="source:CACAO_M_E49546_F9_scaffold_7 4048 4482" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 28702041..28707961 /locus_tag="TCM_024797" /note="dbxref CacaoGD:Thecc1EG024797" mRNA join(28702041..28702570,28702672..28702753, 28703368..28703498,28703724..28703810,28704296..28704374, 28704636..28704724,28705263..28705298,28705733..28705852, 28705985..28706071,28706157..28706306,28706663..28706770, 28707157..28707961) /locus_tag="TCM_024797" /product="Peptidase S41 family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s05430.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s05430.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03089t00001" mRNA join(28702079..28702570,28702672..28702753, 28703368..28703498,28703724..28703810,28704296..28704374, 28704636..28704724,28705263..28705298,28705733..28705852, 28705985..28706071,28706157..28706306,28706663..28706770, 28707167..28707239) /locus_tag="TCM_024797" /product="Peptidase S41 family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s05430.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s05430.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc998t2; inference alignment:Newbler:10:TSA:cgbaL_g03089t00001" mRNA join(28702079..28702570,28702672..28702753, 28703368..28703498,28703724..28703810,28704296..28704374, 28704636..28704709,28705263..28705298,28705733..28705852, 28705985..28706071,28706157..28706306,28706663..28706770, 28707157..>28707239) /locus_tag="TCM_024797" /product="Peptidase S41 family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s05430.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s05430.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc998t3; inference alignment:Newbler:10:TSA:cgbaL_g03089t00001" CDS join(28702232..28702570,28702672..28702753, 28703368..28703498,28703724..28703810,28704296..28704374, 28704636..28704724,28705263..28705298,28705733..28705852, 28705985..28706071,28706157..28706306,28706663..28706770, 28707157..28707402) /locus_tag="TCM_024797" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Peptidase S41 family protein isoform 1" /protein_id="EOY09370.1" /db_xref="Phytozome:POPTR_0006s05430.1" /db_xref="TAIR:AT3G57680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4J3G5" /translation="MEPLCSNFDLLKSSRPTSIPLLSHRFSCFNRGIVKKSSVSLPCA SYSHDPNQLQAVKTEAPLPQSNGHDLIKSITKGFVGFVAAATALASVCSDSPAFAESL TVTFPVSRTQEVNTVQRTLVEAWGLIRETFVDPTYNHQDWDLKLQQTMVEMFPLKSAD AAYGKIRGMLSTLGDPFTRIVSPKEYQNFRIGSDGNLQGVGLFISVEPKTGHLVVLSC VEGSPAARAGIQEGDELIEINGQGLDGVDSEAAALRLRGHAGTTVTVKLHSGKDSGSG SSMKEVKLPREYIRLSPMSSTVIPHRTPDGRLTKTGYVKLSTFSQSAATDMKNTIHDM ESQGVNSYILDLRNNPGGLVKAGLDVAQIWLEGNETLVNTIDRDGHMSPINMVNGHAV THDPLIVLVNEGSASASEILAGALHDNGRAILVGHKTFGKGKIQSVTELHDGSALFVT VAKYLSPALHDIDQVGIMPDVQCTTDMLTSPKGTLMEKSSVSSLEADSCIMVAEHELD IQESKGTAS" CDS join(28702232..28702570,28702672..28702753, 28703368..28703498,28703724..28703810,28704296..28704374, 28704636..28704709,28705263..28705298,28705733..28705852, 28705985..28706071,28706157..28706306,28706663..28706770, 28707157..>28707237) /locus_tag="TCM_024797" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Peptidase S41 family protein isoform 3" /protein_id="EOY09372.1" /db_xref="Phytozome:POPTR_0006s05430.1" /db_xref="TAIR:AT3G57680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4J3G5" /translation="MEPLCSNFDLLKSSRPTSIPLLSHRFSCFNRGIVKKSSVSLPCA SYSHDPNQLQAVKTEAPLPQSNGHDLIKSITKGFVGFVAAATALASVCSDSPAFAESL TVTFPVSRTQEVNTVQRTLVEAWGLIRETFVDPTYNHQDWDLKLQQTMVEMFPLKSAD AAYGKIRGMLSTLGDPFTRIVSPKEYQNFRIGSDGNLQGVGLFISVEPKTGHLVVLSC VEGSPAARAGIQEGDELIEINGQGLDGVDSEAAALRLRGHAGTTVTGKDSGSGSSMKE VKLPREYIRLSPMSSTVIPHRTPDGRLTKTGYVKLSTFSQSAATDMKNTIHDMESQGV NSYILDLRNNPGGLVKAGLDVAQIWLEGNETLVNTIDRDGHMSPINMVNGHAVTHDPL IVLVNEGSASASEILAGALHDNGRAILVGHKTFGKGKIQSVTELHDGSALFVTVAKYL SPALHDID" CDS join(28702232..28702570,28702672..28702753, 28703368..28703498,28703724..28703810,28704296..28704374, 28704636..28704724,28705263..28705298,28705733..28705852, 28705985..28706071,28706157..28706306,28706663..28706770, 28707167..28707235) /locus_tag="TCM_024797" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Peptidase S41 family protein isoform 2" /protein_id="EOY09371.1" /db_xref="Phytozome:POPTR_0006s05430.1" /db_xref="TAIR:AT3G57680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4J3G5" /translation="MEPLCSNFDLLKSSRPTSIPLLSHRFSCFNRGIVKKSSVSLPCA SYSHDPNQLQAVKTEAPLPQSNGHDLIKSITKGFVGFVAAATALASVCSDSPAFAESL TVTFPVSRTQEVNTVQRTLVEAWGLIRETFVDPTYNHQDWDLKLQQTMVEMFPLKSAD AAYGKIRGMLSTLGDPFTRIVSPKEYQNFRIGSDGNLQGVGLFISVEPKTGHLVVLSC VEGSPAARAGIQEGDELIEINGQGLDGVDSEAAALRLRGHAGTTVTVKLHSGKDSGSG SSMKEVKLPREYIRLSPMSSTVIPHRTPDGRLTKTGYVKLSTFSQSAATDMKNTIHDM ESQGVNSYILDLRNNPGGLVKAGLDVAQIWLEGNETLVNTIDRDGHMSPINMVNGHAV THDPLIVLVNEGSASASEILAGALHDNGRAILVGHKTFGKGKIQSYMTDPLSLLRLQS IYHLLFMT" mobile_element complement(28716874..28717507) /note="source:scaffold_5_CACTA_0601 8099 8729" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28719633..28720604 /note="source:CACAO_Again_on_E205_scaffold_9 378 1374" /mobile_element_type="transposon:TIR/hAT" mobile_element 28720600..28721329 /note="source:CACAO_Again_on_E205_scaffold_9 3475 4204" /mobile_element_type="transposon:TIR/hAT" mobile_element 28720605..28720796 /note="source:CACAO_M_S_E64023_F13_scaffold_5 5813 7016" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28720789..28722663) /note="source:INTACT1327F_F381_scaffold_8-int 6069 7948" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28723034..28725938 /note="source:CACAO_M_E44051_F86_scaffold_5 1 2905" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28726686..28726777) /note="source:CACAO_M_E49559_F88_scaffold_7 7631 7726" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 28726700..28726790 /note="source:CACAO_M_E49559_F88_scaffold_7 7631 7725" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 28727299..28741504 /note="source:CACAO_M_S_E66461_F76_scaffold_5 1 14206" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(28734188..28750776) /locus_tag="TCM_024801" /note="dbxref CacaoGD:Thecc1EG024801" mRNA complement(join(28734188..28734218,28745563..28746434, 28748480..28749560,28750558..28750776)) /locus_tag="TCM_024801" /product="Cytochrome P450, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s05300.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024845t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05300.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc5994t2" CDS complement(join(28745790..28746434,28748480..28749400)) /locus_tag="TCM_024801" /note="paralog of Thecc1EG024845t1" /codon_start=1 /product="Cytochrome P450, putative" /protein_id="EOY09373.1" /db_xref="Phytozome:POPTR_0016s05300.1" /db_xref="TAIR:AT2G42250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HII2" /translation="MATTKDGLLYYGSLLLVSFICTYLLQFLSKKLSSYGRARARHLP SPPGLPIIGHLHHLLLNSSSFPKKLHSLATRYGPLLQLQMGAATCVLVSNANFAKEIL KTQELNFVYRPEFGSPEYNIYHGSDFILAPYGTYWRFLKKLCMTRLLSNSTLNQFVQI REQEMAKLLKYLIKVSEGREFCDLGVPLMSMMNNVICRMAMSTRPWENADEAEKIKKL IEELAVVGGKLSAGDILGPLGKFDLLGYGKKLKKALEKFDRLVEDIMKKHEENTTGRK GKDLMDILMETCNDPSAEVKLTRKDIKAFFLDMFMAGTETSSIAVKWAMGELINHPQV FKKLRQEISSVVGPDRLIKESDVQNLPYLQAVVKETLRLHPPSVTLLRQSNEDCKIDG FYLKSKSRIIVNLYSIMRDPNSWNNPDEFIPDRFMGNTNLNSNKELMEMKGQNFDYLP FGSGRRVCPGASLALATIHATVGALVQCFDWKVKGGEMVDMREASGFAATLAMASPLV CYPVTQFNPIEEG" mobile_element complement(28746686..28748373) /note="source:CACAO_M_S_E119191_F3_scaffold_9 1 1690" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28751360..28751924 /note="source:scaffold_5_CACTA_0610 4783 5369" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28752060..28753725 /note="source:CACAO_M_S_E122136_F76_scaffold_10 1 1328" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28755094..28756750) /note="source:CACAO_M_E36294_F51_scaffold_5 12187 13861" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28765947..28772109 /note="source:INTACT51F_F15_scaffold_1-int 1636 7774" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28772210..28773731) /note="source:CACAO_M_E58894_F15_scaffold_9 1953 3469" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28773732..28773917 /note="source:CACAO_M_E58012_F15_scaffold_9 1 186" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28774667..28775054 /note="source:CACAO_M_E44220_F15_scaffold_5 936 1323" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28775155..28779259) /note="source:CACAO_M_E5390_F15_scaffold_2 5415 9532" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28779360..28780343) /note="source:CACAO_M_E10278_F15_scaffold_2 4345 5328" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28787313..28787557 /note="source:CACAO_M_E36044_F82_scaffold_5 582 822" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28787658..28790067 /note="source:CACAO_M_E36044_F82_scaffold_5 874 3302" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28790079..28790380) /note="source:CACAO_M_E1489_F33_scaffold_1 8379 8671" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28790124..28794858 /note="source:scaffold_5_CACTA_0610 1 4735" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28794959..28800337 /note="source:scaffold_5_CACTA_0610 4736 10114" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28801533..28805426 /note="source:scaffold_5_CACTA_0610 10115 14008" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(28804792..28807937) /note="source:CACAO_hAT_E2821_scaffold_6 1 3176" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(28807938..28808126) /note="source:CACAO_M_E84368_F4_scaffold_10 833 1015" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 28808155..28811706 /note="source:scaffold_10_CACTA_0130 123 3847" /mobile_element_type="transposon:TIR/CACTA" gene complement(28813854..28815839) /locus_tag="TCM_024808" /note="dbxref CacaoGD:Thecc1EG024808" mRNA complement(join(28813854..28814363,28815190..28815839)) /locus_tag="TCM_024808" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.41 coverage" CDS complement(join(28814249..28814363,28815190..28815401)) /locus_tag="TCM_024808" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09374.1" /translation="MLGMATVPSLQERPNHFQVRVLTLFIYLSRITRKGSFFKKKQRL GSELPNLSMLPLAASKALPMETVMGERASQPLLQSDMMLNVLMRIDRKLTNQAENMVK IEEKLQ" mobile_element 28816336..28816375 /note="source:scaffold_5_CACTA_0610 5709 5748" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28817314..28818819 /note="source:CACAO_M_E44067_F264_scaffold_5 1 1506" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 28829363..28830266 /locus_tag="TCM_024810" /note="dbxref CacaoGD:Thecc1EG024810" mRNA 28829363..28830266 /locus_tag="TCM_024810" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.46 coverage" CDS 28829888..28830211 /locus_tag="TCM_024810" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09375.1" /translation="MLLVLLSIRIIPVLLRLIFLSTAQCTGDFFSFLLDSCILLCMIR LAVQGYFCCCFVPLDLFFGFLRFSNLLCLLGGCTFCFGGSLGDLAAADHVFRYLQTPF MVVGG" gene 28831164..28837297 /locus_tag="TCM_024811" /note="dbxref CacaoGD:Thecc1EG024811" mRNA join(28831164..28831583,28831931..28832170, 28836582..28837297) /locus_tag="TCM_024811" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.14 coverage" CDS join(28831239..28831583,28831931..28832170, 28836582..28837124) /locus_tag="TCM_024811" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09376.1" /translation="MGMAPSNLLVSTEKKSGSEKGASSRRDNCGRIDTMPSMQRGNRV SQIICSSYLLRHGGYGACGVRIRGCDGSLQKTLAAFSGDGGIEMSQRKGVMHGGRLSM PLFGFIWLHQNEMHKMEIFTCLIIESDSTNAKPTSTSWRLRSHTWNIEYMGNKIGEWR IRHTLRKANYMAYKLAKEGVQRVENILVVVEHNGWAAFCRIWWRNGLQHQQPAVTRST SLRRCSLSFLAVSCLSPDLVVRWSTAPTIDGHSIFLPSPTFSLLPCCGLPFVGSSGAM VGSTNNRRSLGLSPFVGVLSPSFSTAARLVSPLSSLGRSSFSPYLPPLGPVSKIPSPA TESFFFGIGFPPDLSLSLPSPTGAGSFFVPVANPSPNSLSL" mobile_element complement(28834141..28834311) /note="source:CACAO_Again_on_E205_scaffold_9 8874 9050" /mobile_element_type="transposon:TIR/hAT" mobile_element 28834429..28834510 /note="source:CACAO_M_E44067_F264_scaffold_5 936 1017" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28837710..28838049) /note="source:CACAO_M_E85127_F17_scaffold_10 158 499" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(28838052..28838368) /note="source:CACAO_M_S_E89594_F17_scaffold_8 1 314" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28838399..28841311 /note="source:CACAO_M_S_E66481_F86_scaffold_5 1 2913" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 28841349..28845534 /locus_tag="TCM_024812" /note="dbxref CacaoGD:Thecc1EG024812" mRNA join(28841349..28841907,28844997..28845534) /locus_tag="TCM_024812" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004251t1" /note="quality class is medium-utrpoor, express is medium, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.34 coverage" CDS 28845083..28845352 /locus_tag="TCM_024812" /note="paralog of Thecc1EG004251t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09377.1" /translation="MSTSNLLPLLIENQYLNLVPMKIIPNPSTRNYDPNAKCDYHIGV IGHLTKKCKQLKEKIENLIKDGILSLELMECWKSALPQIRLLLGS" gene complement(28850738..28854341) /locus_tag="TCM_024813" /note="dbxref CacaoGD:Thecc1EG024813" mRNA complement(join(28850738..28850816,28853620..28854341)) /locus_tag="TCM_024813" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s05440.1" /note="quality class is medium-utrpoor, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6567t1" CDS complement(28854041..28854241) /locus_tag="TCM_024813" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09378.1" /translation="MAKVCFSEAIMIIFVAALLSVATTVSAQDSATAPSPSMDTGAAF SLPVSGVAVAFSLIVCLLALKQ" gene 28854469..28854844 /locus_tag="TCM_024814" /note="dbxref CacaoGD:Thecc1EG024814" mRNA 28854469..28854844 /locus_tag="TCM_024814" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.40 coverage" CDS 28854614..28854826 /locus_tag="TCM_024814" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09379.1" /translation="MGNLTQHHVPCAARPRRLRLLTNHCCLFHFSFSLLVLEKVSLTD KISLKEEMRNVRKLLKPSFKLQLLQG" mobile_element 28864663..28866180 /note="source:INTACT566_F257_scaffold_7-int 3736 5267" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(28866894..28867790) /locus_tag="TCM_024815" /note="dbxref CacaoGD:Thecc1EG024815" mRNA complement(28866894..28867790) /locus_tag="TCM_024815" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s05260.1" /note="quality class is medium-utrpoor, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc10902t1" CDS complement(28867360..28867560) /locus_tag="TCM_024815" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09380.1" /translation="MAWFGTSAAHILLAMFVVALFYVSGIMAQDIAPSPAMDTGAGIS LPVTGVLVCSSILASLIALLLQ" gene complement(28868143..28883146) /locus_tag="TCM_024816" /note="dbxref CacaoGD:Thecc1EG024816" mRNA complement(join(28868143..28868166,28877385..28878936, 28879020..28879071,28879240..28879313,28879436..28879485, 28879568..28879649,28879898..28879947,28880053..28880095, 28880175..28880255,28880349..28880394,28880894..28880940, 28881072..28881137,28882224..28882290,28882675..28882799, 28883034..28883073)) /locus_tag="TCM_024816" /product="NIMA-related kinase 7 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s05500.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040597t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05240.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01752t00001" mobile_element 28873963..28876582 /note="source:CACAO_M_E44070_F53_scaffold_5 1 2620" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA complement(join(28877597..28878936,28879020..28879071, 28879240..28879313,28879436..28879485,28879568..28879649, 28879898..28879947,28880053..28880095,28880175..28880255, 28880349..28880394,28880894..28881137,28882224..28882290, 28882675..28882799,28883034..28883146)) /locus_tag="TCM_024816" /product="NIMA-related kinase 7 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s05500.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05240.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc355t3_C2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14122t2; inference alignment:Newbler:10:TSA:cgbaB_g01752t00001" mRNA complement(join(28877600..28878936,28879020..28879071, 28879240..28879313,28879436..28879485,28879568..28879649, 28879898..28880394,28880894..28880939)) /locus_tag="TCM_024816" /product="NIMA-related kinase 7 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s05500.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05240.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc369t8; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14122t2; inference alignment:Newbler:10:TSA:cgbaB_g01752t00001" mRNA complement(join(28877600..28879071,28879240..28879313, 28879436..28879485,28879568..28879649,28879898..28879945)) /locus_tag="TCM_024816" /product="NIMA-related kinase 7 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s05500.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05240.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc369t10; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14122t2; inference alignment:Newbler:10:TSA:cgbaB_g01752t00001" mRNA complement(join(28877600..28878936,28879020..28879071, 28879240..28879313,28879436..28879485,28879568..28879921)) /locus_tag="TCM_024816" /product="NIMA-related kinase 7 isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s05500.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05240.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc369t11; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14122t2; inference alignment:Newbler:10:TSA:cgbaB_g01752t00001" CDS complement(join(28877758..28878936,28879020..28879071, 28879240..28879313,28879436..28879485,28879568..28879649, 28879898..28879947,28880053..28880095,28880175..28880255, 28880349..28880394,28880894..28880940,28881072..28881137, 28882224..28882290,28882675..28882793)) /locus_tag="TCM_024816" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG040597t1" /codon_start=1 /product="NIMA-related kinase 7 isoform 1" /protein_id="EOY09381.1" /db_xref="Phytozome:POPTR_0016s05240.1" /translation="MESDNGDVKSKMEDYEVIEQIGRGAFGAAFLVLHKLEKKKYVLK KIRLAKQTEKFKRTAHQEMELIAKLNNPYIVEYKDAWVDKGNSICIVTGYCEGGDMAE LIKKARGMHFPEEKICKWMTQLLLAVDYLHSNRVLHRDLKCSNIFLTKDNDIRLGDFG LAKLLNTEDLASSVVGTPNYMCPELLADIPYGYKSDIWSLGCCMFEIAAHQPAFRAPD MAGLISKINRSSISPLPILYSSTLKQIIKSMLRKNPEHRPTAAELLRHPHLQPYLLRC RNPSSVYLPIKPTNSPKEMTPRKSLSSKPGSGKDRGVQHAGVSNGQGNIHALQSFADV QLSSSPSCEKPTSTASTEDNLVTKRVDPTSCTVEISNSISDSKDMSTDSEVSVSNGDK QAHYNLIPQKDADVQSPSETAFNSQHDEKEEPTSEHTQNLPEADIKSVSRKEETFCDM QVLEEAAKEVLDMQILGRSGDSSKLTVSSISCDDKNGFPDDGSSSSTVYETDVERRCS SNKTSSPKAKTEGADTSYLSSESNGVLPCKNEAGATSDNNTCSFQTEKEGARPINLSP SDVSLLSRLTALSGDEIRSVWENPSQQRADALESLLELCARLLKQDKLDELAGVLRPF GEEVVSSRETAIWLTKSLMSAQKCDWQ" CDS complement(join(28877758..28878936,28879020..28879071, 28879240..28879313,28879436..28879485,28879568..28879649, 28879898..28879947,28880053..28880095,28880175..28880255, 28880349..28880394,28880894..28880895)) /locus_tag="TCM_024816" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="NIMA-related kinase 7 isoform 2" /protein_id="EOY09382.1" /db_xref="Phytozome:POPTR_0016s05240.1" /translation="MAELIKKARGMHFPEEKICKWMTQLLLAVDYLHSNRVLHRDLKC SNIFLTKDNDIRLGDFGLAKLLNTEDLASSVVGTPNYMCPELLADIPYGYKSDIWSLG CCMFEIAAHQPAFRAPDMAGLISKINRSSISPLPILYSSTLKQIIKSMLRKNPEHRPT AAELLRHPHLQPYLLRCRNPSSVYLPIKPTNSPKEMTPRKSLSSKPGSGKDRGVQHAG VSNGQGNIHALQSFADVQLSSSPSCEKPTSTASTEDNLVTKRVDPTSCTVEISNSISD SKDMSTDSEVSVSNGDKQAHYNLIPQKDADVQSPSETAFNSQHDEKEEPTSEHTQNLP EADIKSVSRKEETFCDMQVLEEAAKEVLDMQILGRSGDSSKLTVSSISCDDKNGFPDD GSSSSTVYETDVERRCSSNKTSSPKAKTEGADTSYLSSESNGVLPCKNEAGATSDNNT CSFQTEKEGARPINLSPSDVSLLSRLTALSGDEIRSVWENPSQQRADALESLLELCAR LLKQDKLDELAGVLRPFGEEVVSSRETAIWLTKSLMSAQKCDWQ" CDS complement(join(28877758..28878936,28879020..28879071, 28879240..28879313,28879436..28879485,28879568..28879649, 28879898..28879987)) /locus_tag="TCM_024816" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="NIMA-related kinase 7 isoform 3" /protein_id="EOY09383.1" /db_xref="Phytozome:POPTR_0016s05240.1" /translation="MSSKICMCCMDCTGDFGLAKLLNTEDLASSVVGTPNYMCPELLA DIPYGYKSDIWSLGCCMFEIAAHQPAFRAPDMAGLISKINRSSISPLPILYSSTLKQI IKSMLRKNPEHRPTAAELLRHPHLQPYLLRCRNPSSVYLPIKPTNSPKEMTPRKSLSS KPGSGKDRGVQHAGVSNGQGNIHALQSFADVQLSSSPSCEKPTSTASTEDNLVTKRVD PTSCTVEISNSISDSKDMSTDSEVSVSNGDKQAHYNLIPQKDADVQSPSETAFNSQHD EKEEPTSEHTQNLPEADIKSVSRKEETFCDMQVLEEAAKEVLDMQILGRSGDSSKLTV SSISCDDKNGFPDDGSSSSTVYETDVERRCSSNKTSSPKAKTEGADTSYLSSESNGVL PCKNEAGATSDNNTCSFQTEKEGARPINLSPSDVSLLSRLTALSGDEIRSVWENPSQQ RADALESLLELCARLLKQDKLDELAGVLRPFGEEVVSSRETAIWLTKSLMSAQKCDWQ " CDS complement(join(28877758..28878936,28879020..28879071, 28879240..28879313,28879436..28879485,28879568..28879628)) /locus_tag="TCM_024816" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="NIMA-related kinase 7 isoform 5" /protein_id="EOY09385.1" /db_xref="Phytozome:POPTR_0016s05240.1" /translation="MCPELLADIPYGYKSDIWSLGCCMFEIAAHQPAFRAPDMAGLIS KINRSSISPLPILYSSTLKQIIKSMLRKNPEHRPTAAELLRHPHLQPYLLRCRNPSSV YLPIKPTNSPKEMTPRKSLSSKPGSGKDRGVQHAGVSNGQGNIHALQSFADVQLSSSP SCEKPTSTASTEDNLVTKRVDPTSCTVEISNSISDSKDMSTDSEVSVSNGDKQAHYNL IPQKDADVQSPSETAFNSQHDEKEEPTSEHTQNLPEADIKSVSRKEETFCDMQVLEEA AKEVLDMQILGRSGDSSKLTVSSISCDDKNGFPDDGSSSSTVYETDVERRCSSNKTSS PKAKTEGADTSYLSSESNGVLPCKNEAGATSDNNTCSFQTEKEGARPINLSPSDVSLL SRLTALSGDEIRSVWENPSQQRADALESLLELCARLLKQDKLDELAGVLRPFGEEVVS SRETAIWLTKSLMSAQKCDWQ" CDS complement(28877758..28878831) /locus_tag="TCM_024816" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="NIMA-related kinase 7 isoform 4" /protein_id="EOY09384.1" /db_xref="Phytozome:POPTR_0016s05240.1" /db_xref="TAIR:AT3G12200.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GU84" /translation="MTPRKSLSSKPGSGKDRGVQHAGVSNGQGNIHALQSFADVQLSS SPSCEKPTSTASTEDNLVTKRVDPTSCTVEISNSISDSKDMSTDSEVSVSNGDKQAHY NLIPQKDADVQSPSETAFNSQHDEKEEPTSEHTQNLPEADIKSVSRKEETFCDMQVLE EAAKEVLDMQILGRSGDSSKLTVSSISCDDKNGFPDDGSSSSTVYETDVERRCSSNKT SSPKAKTEGADTSYLSSESNGVLPCKNEAGATSDNNTCSFQTEKEGARPINLSPSDVS LLSRLTALSGDEIRSVWENPSQQRADALESLLELCARLLKQDKLDELAGVLRPFGEEV VSSRETAIWLTKSLMSAQKCDWQ" gene complement(28884057..28887871) /locus_tag="TCM_024818" /note="dbxref CacaoGD:Thecc1EG024818" mRNA complement(join(28884057..28884597,28885161..28885333, 28885433..28885523,28886093..28886175,28886258..28886364, 28886456..28886515,28886756..28886857,28886993..28887091, 28887516..28887871)) /locus_tag="TCM_024818" /product="Chaperone DnaJ-domain superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033339001" /inference="similar to AA sequence:Phytozome:GSVIVT01033339001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00755t00001" CDS complement(join(28884377..28884597,28885161..28885333, 28885433..28885523,28886093..28886175,28886258..28886364, 28886456..28886515,28886756..28886857,28886993..28887091, 28887516..28887623)) /locus_tag="TCM_024818" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Chaperone DnaJ-domain superfamily protein isoform 1" /protein_id="EOY09386.1" /db_xref="Phytozome:GSVIVT01033339001" /db_xref="TAIR:AT3G12170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9SYM0" /translation="MGKKKKSRVSRDEEEDEVVQEEEENHSSSDDKSLYEVLGVEKTA SQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDAEKRALYDQTGCIDD ADLAGDVVQDLKDFFRAMYKKVTEADIEEFEANYRGSDSEKKDLIDLYKKCKGNMNKL FCSMLCSDPKLDSHRFKDMLDEAIAAGEFKETKAYQKWAKKISQIKPPTSPLRRKRKS NKQPEADLFAIISERRSERKDRFDSMFSSLISKYGGNADSEPTEEEFEAAQRKVESQQ LEDSSTAKHGHHEFETFNGRILKDLAVAPEFKTCGKGLRMCSNLFIARSKEWSPLSTS SCGKEWIVKMFDS" mRNA complement(join(28884859..28885214,28885433..28885532, 28886092..28886175,28886258..28886364,28886456..28886515, 28886756..28886857,28886993..28887091,28887516..28887851)) /locus_tag="TCM_024818" /product="Chaperone DnaJ-domain superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033339001" /inference="similar to AA sequence:Phytozome:GSVIVT01033339001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc85t3; inference alignment:Newbler:10:TSA:cgbaP1_g00755t00001" mRNA complement(join(28884890..28885333,28885433..28885523, 28886093..28886175,28886258..28886364,28886456..28886515, 28886804..28886857,28886993..28887091,28887516..28887659)) /locus_tag="TCM_024818" /product="Chaperone DnaJ-domain superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033339001" /inference="similar to AA sequence:Phytozome:GSVIVT01033339001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00755t00002; inference alignment:Newbler:10:TSA:cgbaP1_g00755t00001" CDS complement(join(28885086..28885214,28885433..28885532, 28886092..28886175,28886258..28886364,28886456..28886515, 28886756..28886857,28886993..28887091,28887516..28887623)) /locus_tag="TCM_024818" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Chaperone DnaJ-domain superfamily protein isoform 3" /protein_id="EOY09388.1" /db_xref="Phytozome:GSVIVT01033339001" /db_xref="TAIR:AT5G06910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9SYM0" /translation="MGKKKKSRVSRDEEEDEVVQEEEENHSSSDDKSLYEVLGVEKTA SQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDAEKRALYDQTGCIDD ADLAGDVVQDLKDFFRAMYKKVTEADIEEFEANYRGSDSEKKDLIDLYKKCKGNMNKL FCSMLCSDPKLDSHRFKDMLDEAIAAGLCRRIQRNQSLPEMGKENFSNQATYQSLEEE EEILNLLKKNLKLHRGKLKAVRPPANQSGSDIASYLDFILGLFL" CDS complement(join(28885129..28885333,28885433..28885523, 28886093..28886175,28886258..28886364,28886456..28886515, 28886804..28886857,28886993..28887091,28887516..28887623)) /locus_tag="TCM_024818" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Chaperone DnaJ-domain superfamily protein isoform 2" /protein_id="EOY09387.1" /db_xref="Phytozome:GSVIVT01033339001" /db_xref="TAIR:AT3G12170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9SYM0" /translation="MGKKKKSRVSRDEEEDEVVQEEEENHSSSDDKSLYEVLGVEKTA SQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDDLAGDVVQDLKDFFR AMYKKVTEADIEEFEANYRGSDSEKKDLIDLYKKCKGNMNKLFCSMLCSDPKLDSHRF KDMLDEAIAAGEFKETKAYQKWAKKISQIKPPTSPLRRKRKSNKQPEADLFAIISERR SERKDRFDSMFSSLISKYGGNADSEPTEEEFEAAQRKVESRKASSKSKRK" gene 28891576..28894064 /locus_tag="TCM_024819" /note="dbxref CacaoGD:Thecc1EG024819" mRNA join(28891576..28891737,28891899..28891957, 28893174..28894004) /locus_tag="TCM_024819" /product="Zinc finger A20 and AN1 domain-containing stress-associated protein 8 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s05220.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040596t2" /inference="similar to AA sequence:Phytozome:POPTR_0016s05220.2" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaL_g14561t00001; alternateUTRof:Thecc1EG024819t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14127t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc483t2" mRNA join(28891659..28891737,28891899..28891957, 28893174..28893976) /locus_tag="TCM_024819" /product="Zinc finger A20 and AN1 domain-containing stress-associated protein 8 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s05220.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040596t2" /inference="similar to AA sequence:Phytozome:POPTR_0016s05220.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14127t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14127t1" mRNA join(28891672..28891737,28891899..28891957, 28893154..28894063) /locus_tag="TCM_024819" /product="Zinc finger A20 and AN1 domain-containing stress-associated protein 8 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s05220.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040596t2" /inference="similar to AA sequence:Phytozome:POPTR_0016s05220.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc562t8; alternateUTRof:Thecc1EG024819t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14127t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc483t2" mRNA join(28891928..28891957,28892821..28892917, 28893174..28894064) /locus_tag="TCM_024819" /product="Zinc finger A20 and AN1 domain-containing stress-associated protein 8 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s05220.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040596t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05220.2" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc483t10; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc483t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14127t1" CDS join(28892901..28892917,28893174..28893705) /locus_tag="TCM_024819" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG040596t1" /codon_start=1 /product="Zinc finger A20 and AN1 domain-containing stress-associated protein 8 isoform 4" /protein_id="EOY09392.1" /db_xref="Phytozome:POPTR_0016s05220.2" /db_xref="TAIR:AT1G51200.4" /db_xref="UniProtKB/TrEMBL:UniRef50_A3BDI8" /translation="MILMSWRLEKMESHDETGCQAPEGPILCVNNCGFFGSAATMNMC SKCHKAMILKQEQVQLAASSIGSIVNGSSSGNGKEPTLAAALDVQSGIFESKNGSAEP SIDPSRMTFGGMKIKEGPNRCTTCRKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYR TAARDAIAKANPVVRAEKLDKI" CDS 28893187..28893705 /locus_tag="TCM_024819" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG040596t2" /codon_start=1 /product="Zinc finger A20 and AN1 domain-containing stress-associated protein 8 isoform 1" /protein_id="EOY09389.1" /db_xref="Phytozome:POPTR_0016s05220.2" /db_xref="TAIR:AT1G51200.4" /db_xref="UniProtKB/TrEMBL:UniRef50_A3BDI8" /translation="MESHDETGCQAPEGPILCVNNCGFFGSAATMNMCSKCHKAMILK QEQVQLAASSIGSIVNGSSSGNGKEPTLAAALDVQSGIFESKNGSAEPSIDPSRMTFG GMKIKEGPNRCTTCRKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRTAARDAIAKA NPVVRAEKLDKI" CDS 28893187..28893705 /locus_tag="TCM_024819" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG040596t2" /codon_start=1 /product="Zinc finger A20 and AN1 domain-containing stress-associated protein 8 isoform 1" /protein_id="EOY09390.1" /db_xref="Phytozome:POPTR_0016s05220.2" /db_xref="TAIR:AT1G51200.4" /db_xref="UniProtKB/TrEMBL:UniRef50_A3BDI8" /translation="MESHDETGCQAPEGPILCVNNCGFFGSAATMNMCSKCHKAMILK QEQVQLAASSIGSIVNGSSSGNGKEPTLAAALDVQSGIFESKNGSAEPSIDPSRMTFG GMKIKEGPNRCTTCRKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRTAARDAIAKA NPVVRAEKLDKI" CDS 28893187..28893705 /locus_tag="TCM_024819" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG040596t2" /codon_start=1 /product="Zinc finger A20 and AN1 domain-containing stress-associated protein 8 isoform 1" /protein_id="EOY09391.1" /db_xref="Phytozome:POPTR_0016s05220.2" /db_xref="TAIR:AT1G51200.4" /db_xref="UniProtKB/TrEMBL:UniRef50_A3BDI8" /translation="MESHDETGCQAPEGPILCVNNCGFFGSAATMNMCSKCHKAMILK QEQVQLAASSIGSIVNGSSSGNGKEPTLAAALDVQSGIFESKNGSAEPSIDPSRMTFG GMKIKEGPNRCTTCRKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRTAARDAIAKA NPVVRAEKLDKI" gene 28895487..28905711 /locus_tag="TCM_024820" /note="dbxref CacaoGD:Thecc1EG024820" mRNA join(28895487..28896074,28901216..28904058, 28904754..28905711) /locus_tag="TCM_024820" /product="Receptor protein kinase CLAVATA1, putative" /inference="alignment:exonerate- protein:2:ricco:27810.m000666" /inference="similar to AA sequence:ricco:27810.m000666" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc247t3" CDS join(28901775..28904058,28904754..28905124) /locus_tag="TCM_024820" /note="dbxref ricco:27810.m000666" /codon_start=1 /product="Receptor protein kinase CLAVATA1, putative" /protein_id="EOY09393.1" /db_xref="TAIR:AT5G06940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SL80" /translation="MATACIYPFLLSLSFTFFMFCSASTEADTLLSFKAFIDDPKNSL SSWSNTSGVHHCNWTGIICIPTPSLYVSSINLQSLNLSGEISSSICDLPYLSQLNLAD NLFDQPIPLHLSECSSLETLNLSNNLIWGTIPDQISQFDALKVLDLSKNHVEGKIPET IGSLVHLQVLNLGSNLLSGSVPFVFGNFTELVVLDLSQNAYLVSEIPTDIGKLEKLEL LFLQRSGFLGEIPESFVGLQNLTNLDLSQNNLTGKLPQTLGSSLKKLVSFDISENKLF GLFPRSICDGKGLKFLSLHTNLFSGSIPNSISECLNLEIFQVQNNGFSGGFPSGLWSL PKLMLLRAENNRFSGELPDSISKAAQLEQVQIDNNSFTGKIPQGLGLVNSLYRFSASL NGLSGEIPPNFCDSPVMSIINLSHNTLSGQIPELKKCRKLVSLSLADNSLTGEIPPSL AELPVLTYLDLSDNRLSGSIPQGLQNLKLALFNVSFNQLSGRVPLSLISGLPASFLEG NPGLCGPGLPNSCSDEQPKHHTSGLTTLTCALISIAFAIGTVIVAAGVFVFHRYSKRK SQIGVWRSVFFYPLRLTEHDLIIGMDEKSALGSGGPFGRAYSISLPSGELVAVKKLVN FGSQSSKALKAEVKTLAKIRHKNIVKVLGFCHSDESIFLIYEFLKKGSLGDLICRPDF QLQWILRLRIAIGVAQGLAYLHKDYVPHLLHRNLKSKNILLDTDYEPKLTDFSLDRLV GEVPFQSTMASEFIHSCYNAPEHGYSKKATEQMDVYSFGVVLLELITGRQAEDIESLD SLDIVKWVRRKVNITNGALQVLDPKISNSSQKEMLGALEIAMRCTAVMPEKRPSMFEV VRTLQSLNTRNCLPNLELSTSEDQSLPV" mobile_element 28905509..28907059 /note="source:INTACT240_F182_scaffold_9-int 1 1523" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(28907057..28908259) /note="source:CACAO_M_S_E17073_F182_scaffold_3 4911 6112" /mobile_element_type="retrotransposon:LTR/Copia" assembly_gap 28908621..28918620 /estimated_length=10000 /gap_type="between scaffolds" mobile_element 28918621..28918669 /note="source:scaffold_10_CACTA_0130 1154 1202" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(28918625..28919461) /note="source:INTACT641_F282_scaffold_1-int 4336 5172" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 28919449..28920883 /note="source:INTACT240_F182_scaffold_9-int 2670 4124" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 28920898..28920961 /note="source:CACAO_M_S_E119852_F182_scaffold_9 3 66" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 28920954..28921686 /note="source:INTACT687_F13_scaffold_3-int 1290 2070" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 28921535..28925578 /locus_tag="TCM_024822" /note="dbxref CacaoGD:Thecc1EG024822" mRNA join(28921535..28921830,28923224..28923675, 28924268..28925578) /locus_tag="TCM_024822" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01004783001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044676t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.11 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc7765t3" mobile_element 28921665..28921992 /note="source:CACAO_M_S_E119852_F182_scaffold_9 52 383" /mobile_element_type="retrotransposon:LTR/Copia" CDS join(28923249..28923675,28924268..28925136) /locus_tag="TCM_024822" /note="paralog of Thecc1EG044676t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09394.1" /translation="MAKVLRSLTPKFDHVVVAIEESHDLSDYFFDELMSSLQAHEERL NKAQDKGEEKAFQVKKEADKFENSGGRGRGRSGFHGRGHGERKGRERSTDQRQIKSNI QCYYRKKISHKRIDCWLKQKDDYKHDEQKHVHFIKKTEVEIGKSWRASNCLELVHVDL CGPMDTESFGGSKYFLLFIDDYSQKIWVFFLKFKFETFDNFKKFKTEVENQSGCNINV LSTDRGGEFVSNEFNNFCEEQGIRRELSAPYTPKQNGAAKRKNRTIVEMATSLLVAKG LPNQFRAEAVATTAYLLNVFPTRAVLNCTPYEAWRGMRPWVSYLRVFGCIAYALVKSQ TQHKLDEKSEKCIFLGYSSQSKAYRLYNSKNGKIIISRDVIFNEDASWDWSSDGNVAK KQPPIHIEALEIGDPVPARSDATANSNSPSLSPNSNNLT" gene 28925625..28941705 /locus_tag="TCM_024823" /note="dbxref CacaoGD:Thecc1EG024823" mRNA join(28925625..28926096,28926271..28926714, 28928125..28928192,28928859..28929338,28929425..28929556, 28929661..28929731,28929830..28929838,28930198..28930286, 28930375..28930448,28930644..28930694,28930794..28930870, 28931192..28932521,28941682..28941705) /locus_tag="TCM_024823" /product="Integrase-type DNA-binding superfamily protein" /inference="similar to AA sequence:TAIR:AT1G51190.1" /note="quality class is weak-expresste, express is weak, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.28 coverage" CDS join(28926607..28926714,28928125..28928192, 28928859..28929338,28929425..28929556,28929661..28929731, 28929830..28929838,28930198..28930286,28930375..28930448, 28930644..28930694,28930794..28930870,28931192..28932516) /locus_tag="TCM_024823" /codon_start=1 /product="Integrase-type DNA-binding superfamily protein" /protein_id="EOY09395.1" /db_xref="TAIR:AT1G51190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5YGP8" /translation="MEELSTLNFVINSIEARLQAKETELKSCGTDEQVADILFCLCMS IDFSSKDFTSFNHLWTIFSSINMSSPNFDGSPCLPFSPMSSPHPTQLAPQLEDSNTIF MNGTLDNLFQNHSLFPMAQPNYSPDAHQSFGFLSNFLQVNQTAASLPEYPLQNETSLL LQNSPEFPYNMSQGITNSFMEQNAEEMICGSDEASNKSSTVKRKQRNTSKNKKQTVET SVKDNSSQSSGGSNETTSNKCRKRRQRRQERVFGVRSSTYRGVSRCRYTDRYEAFLWD NSDRSQKPKTVYIGGYDDEESAARAYDIAALKLWGESAPLNFPMCNYEKDLEEMQFYT KNEYFRSLRRKSRGFAKGASIYRGVSRNSDFKKWQARIGKGKEIKGIYLGTFDTEEEA ARAYDVAAIRLKGDNAITNFDINEYDLTSILQSTKLPIGKGASKLLLESSMDDVIRKK RNCTNEQIALVHFEEDDSGSPDPNLVSMHPQQFQNLLAPEDPNMEHQQNLNHSNQQDL NQILNSSLLHGFQNLDELRANPTLLQGFNCFGGDMSNDENLSFNFDVEFPSNVDLDGY LTILEAGEKYNGGLERGIQEMQPFEFPQDITAPENLQFTNQVLHQNPSFNFMQGYDQN PTFPILQGYQNPVELRENLAGTGWRNRLETATEFNGNYNGGTFPIEGIMEGCSAVGSA YDNFSTELSGEVQQMQLRENLQSLLALQGQDSHNLNQGHEDVTTQNLYQEPINFQTNP SSDYLFSGNYNEEVSCNGIFEGLPRVMEIKNNSTGDHDDNFWDSRAALVENPVPGTAG NGVNFFEDIEEDFLSSCLQALNELGPLSF" mobile_element complement(28933621..28933737) /note="source:CACAO_Mutator_E592_scaffold_3 20482 20583" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(28934917..28935035) /note="source:scaffold_9_CACTA_0936 327 421" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28936870..28936933 /note="source:CACAO_PIF_E8_scaffold_1 2099 2154" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(28937129..28937937) /note="source:scaffold_4_CACTA_0506 2685 3579" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28938541..28938667 /note="source:scaffold_2_CACTA_0243 76 193" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28940053..28940094 /note="source:CACAO_PIF_E8_scaffold_1 2099 2140" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(28941879..28948606) /locus_tag="TCM_024825" /note="dbxref CacaoGD:Thecc1EG024825" mRNA complement(join(28941879..28942557,28942925..28943038, 28943155..28943355,28944030..28944203,28944319..28944528, 28944674..28944965,28945067..28945912,28945993..28946183, 28946297..28946370,28948287..28948441)) /locus_tag="TCM_024825" /product="Nucleolar protein gar2-related isoform 2" /inference="alignment:exonerate-protein:2:frave:gene00564" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017118t3" /inference="similar to AA sequence:ricco:27810.m000667" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6555t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6555t2" mRNA complement(join(28941879..28942557,28942925..28943038, 28943155..28943355,28944030..28944203,28944319..28944528, 28944674..28944772,28944839..28944965,28945067..28946183, 28946297..28946370)) /locus_tag="TCM_024825" /product="Nucleolar protein gar2-related isoform 3" /inference="alignment:exonerate-protein:2:frave:gene00564" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017118t3" /inference="similar to AA sequence:ricco:27810.m000667" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6555t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6555t2" mRNA complement(join(28941988..28942532,28942614..28942635, 28942925..28943038,28943155..28943355,28944030..28944203, 28944319..28944528,28944674..28944965,28945067..28946592, 28948066..28948606)) /locus_tag="TCM_024825" /product="Nucleolar protein gar2-related isoform 1" /inference="alignment:exonerate-protein:2:frave:gene00564" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017118t3" /inference="similar to AA sequence:ricco:27810.m000667" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6555t2" mRNA complement(join(28942004..28942556,28943153..28943355, 28944030..28944203,28944319..28944528,28944674..28944965, 28945067..28946020)) /locus_tag="TCM_024825" /product="Nucleolar protein gar2-related isoform 5" /inference="alignment:exonerate-protein:2:frave:gene00564" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017118t2" /inference="similar to AA sequence:ricco:27810.m000667" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc75t9; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6555t2" mRNA complement(join(28942133..28942557,28942925..28943355, 28944030..28944203,28944319..28944528,28944674..28944965, 28945067..28946016)) /locus_tag="TCM_024825" /product="Nucleolar protein gar2-related isoform 4" /inference="alignment:exonerate-protein:2:frave:gene00564" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017118t3" /inference="similar to AA sequence:ricco:27810.m000667" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc69t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6555t2" CDS complement(join(28942213..28942557,28942925..28943038, 28943155..28943355,28944030..28944203,28944319..28944528, 28944674..28944772,28944839..28944965,28945067..28946160)) /locus_tag="TCM_024825" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:27810.m000667; paralog of Thecc1EG017118t3" /codon_start=1 /product="Nucleolar protein gar2-related isoform 3" /protein_id="EOY09398.1" /db_xref="TAIR:AT2G42320.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A2Q3E1" /translation="MKETGKRRNSANVQSKRSGRTERKNNKPHQEAGSKTLNVKETES KALKARPDNSSLVSDSNAGSEPSEVYENVVIHYVDDVNRSEEISRDSKTNATTNKVKK DEILDDRSSDMEGETSQGKEGESDSETIKDSVSSQGDPWTAEDEKGESVSAVPKVVSN GNLSDSSSCGSRMGSEPETNKLRSKALNNTSKKSEKSNGGPTKDATKSSLEKNSKTLK VSGKPSSESSEISNDKYAEEVKEIDVLDETSNGTQSFGSESEPVDAEDKFQVEDETAL NEKIEEMETRIEKLEAELREVAALEISLYSVVPEHGSSAHKVHTPARRLSRLYIHACK HWTQNKRATIAKNSVSGLILIAKSCGNDVSRLTFWLSNTIVLREIISLAFGNSCNSSP LTRLPESNGSNKRSELVDDWQETGTFTSALEKVESWIFSRIVESVWWQALTPHMQALH EGSSASRTVGKLLGPALGDQQQGSLSINLWKNAFQDAFQRLCPVRAEAHECGCLPVIA RMVMEHCIARLDVAMFNAILRESAHEIPTDPVSDPIVDSKVLPIPAGDLSFGSGAQLK NSVGNWSRWLTDMFGMDSDDALKEDQPNSQDDFKQNGDGESKSFLFLNALSDLLMLPK DMLMDRSIRNEVCPSIGLPLVKRILCNFTPDEFCPDPVPGAVLEALNAESIVERRLSG DSARSFPYTAASVVYTSPSSADVAEKVAKAGGKSQLSRNASVVQRKGYTSDEELEELD SPLASIIDKLPLSPTMVGNGRVNGKHEHEGCGAANARYELLREVWSA" CDS complement(join(28942213..28942532,28942614..28942635, 28942925..28943038,28943155..28943355,28944030..28944203, 28944319..28944528,28944674..28944965,28945067..28946160)) /locus_tag="TCM_024825" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:27810.m000667; paralog of Thecc1EG017118t3" /codon_start=1 /product="Nucleolar protein gar2-related isoform 1" /protein_id="EOY09396.1" /db_xref="TAIR:AT2G42320.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A2Q3E1" /translation="MKETGKRRNSANVQSKRSGRTERKNNKPHQEAGSKTLNVKETES KALKARPDNSSLVSDSNAGSEPSEVYENVVIHYVDDVNRSEEISRDSKTNATTNKVKK DEILDDRSSDMEGETSQGKEGESDSETIKDSVSSQGDPWTAEDEKGESVSAVPKVVSN GNLSDSSSCGSRMGSEPETNKLRSKALNNTSKKSEKSNGGPTKDATKSSLEKNSKTLK VSGKPSSESSEISNDKYAEEVKEIDVLDETSNGTQSFGSESEPVDAEDKFQVEDETAL NEKIEEMETRIEKLEAELREVAALEISLYSVVPEHGSSAHKVHTPARRLSRLYIHACK HWTQNKRATIAKNSVSGLILIAKSCGNDVSRLTFWLSNTIVLREIISLAFGNSCNSSP LTRLPESNGSNKRSEVKPPTLKWKGGAGSKHINGFVQLVDDWQETGTFTSALEKVESW IFSRIVESVWWQALTPHMQALHEGSSASRTVGKLLGPALGDQQQGSLSINLWKNAFQD AFQRLCPVRAEAHECGCLPVIARMVMEHCIARLDVAMFNAILRESAHEIPTDPVSDPI VDSKVLPIPAGDLSFGSGAQLKNSVGNWSRWLTDMFGMDSDDALKEDQPNSQDDFKQN GDGESKSFLFLNALSDLLMLPKDMLMDRSIRNEVCPSIGLPLVKRILCNFTPDEFCPD PVPGAVLEALNAEELILPLTGDSARSFPYTAASVVYTSPSSADVAEKVAKAGGKSQLS RNASVVQRKGYTSDEELEELDSPLASIIDKLPLSPTMVGNGRVNGKHEHEGCGAANAR YELLREVWSA" CDS complement(join(28942213..28942557,28942925..28943038, 28943155..28943355,28944030..28944203,28944319..28944528, 28944674..28944965,28945067..28945824)) /locus_tag="TCM_024825" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:27810.m000667; paralog of Thecc1EG017118t3" /codon_start=1 /product="Nucleolar protein gar2-related isoform 2" /protein_id="EOY09397.1" /db_xref="TAIR:AT2G42320.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A2Q3E1" /translation="MEGETSQGKEGESDSETIKDSVSSQGDPWTAEDEKGESVSAVPK VVSNGNLSDSSSCGSRMGSEPETNKLRSKALNNTSKKSEKSNGGPTKDATKSSLEKNS KTLKVSGKPSSESSEISNDKYAEEVKEIDVLDETSNGTQSFGSESEPVDAEDKFQVED ETALNEKIEEMETRIEKLEAELREVAALEISLYSVVPEHGSSAHKVHTPARRLSRLYI HACKHWTQNKRATIAKNSVSGLILIAKSCGNDVSRLTFWLSNTIVLREIISLAFGNSC NSSPLTRLPESNGSNKRSEVKPPTLKWKGGAGSKHINGFVQLVDDWQETGTFTSALEK VESWIFSRIVESVWWQALTPHMQALHEGSSASRTVGKLLGPALGDQQQGSLSINLWKN AFQDAFQRLCPVRAEAHECGCLPVIARMVMEHCIARLDVAMFNAILRESAHEIPTDPV SDPIVDSKVLPIPAGDLSFGSGAQLKNSVGNWSRWLTDMFGMDSDDALKEDQPNSQDD FKQNGDGESKSFLFLNALSDLLMLPKDMLMDRSIRNEVCPSIGLPLVKRILCNFTPDE FCPDPVPGAVLEALNAESIVERRLSGDSARSFPYTAASVVYTSPSSADVAEKVAKAGG KSQLSRNASVVQRKGYTSDEELEELDSPLASIIDKLPLSPTMVGNGRVNGKHEHEGCG AANARYELLREVWSA" CDS complement(join(28942547..28942556,28943153..28943355, 28944030..28944203,28944319..28944528,28944674..28944965, 28945067..28945824)) /locus_tag="TCM_024825" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:27810.m000667; paralog of Thecc1EG017118t2" /codon_start=1 /product="Nucleolar protein gar2-related isoform 5" /protein_id="EOY09400.1" /db_xref="TAIR:AT2G42320.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A2Q3E1" /translation="MEGETSQGKEGESDSETIKDSVSSQGDPWTAEDEKGESVSAVPK VVSNGNLSDSSSCGSRMGSEPETNKLRSKALNNTSKKSEKSNGGPTKDATKSSLEKNS KTLKVSGKPSSESSEISNDKYAEEVKEIDVLDETSNGTQSFGSESEPVDAEDKFQVED ETALNEKIEEMETRIEKLEAELREVAALEISLYSVVPEHGSSAHKVHTPARRLSRLYI HACKHWTQNKRATIAKNSVSGLILIAKSCGNDVSRLTFWLSNTIVLREIISLAFGNSC NSSPLTRLPESNGSNKRSEVKPPTLKWKGGAGSKHINGFVQLVDDWQETGTFTSALEK VESWIFSRIVESVWWQALTPHMQALHEGSSASRTVGKLLGPALGDQQQGSLSINLWKN AFQDAFQRLCPVRAEAHECGCLPVIARMVMEHCIARLDVAMFNAILRESAHEIPTDPV SDPIVDSKVLPIPAGDLSFGSGAQLKNSVGNWSRWLTDMFGMDSDDALKEDQPNSQDD FKQNGDGESKSFLFLNALSDLLMLPKDMLMDRSIRNEVYC" CDS complement(join(28943143..28943355,28944030..28944203, 28944319..28944528,28944674..28944965,28945067..28945824)) /locus_tag="TCM_024825" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:27810.m000667; paralog of Thecc1EG017118t3" /codon_start=1 /product="Nucleolar protein gar2-related isoform 4" /protein_id="EOY09399.1" /db_xref="TAIR:AT2G42320.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A2Q3E1" /translation="MEGETSQGKEGESDSETIKDSVSSQGDPWTAEDEKGESVSAVPK VVSNGNLSDSSSCGSRMGSEPETNKLRSKALNNTSKKSEKSNGGPTKDATKSSLEKNS KTLKVSGKPSSESSEISNDKYAEEVKEIDVLDETSNGTQSFGSESEPVDAEDKFQVED ETALNEKIEEMETRIEKLEAELREVAALEISLYSVVPEHGSSAHKVHTPARRLSRLYI HACKHWTQNKRATIAKNSVSGLILIAKSCGNDVSRLTFWLSNTIVLREIISLAFGNSC NSSPLTRLPESNGSNKRSEVKPPTLKWKGGAGSKHINGFVQLVDDWQETGTFTSALEK VESWIFSRIVESVWWQALTPHMQALHEGSSASRTVGKLLGPALGDQQQGSLSINLWKN AFQDAFQRLCPVRAEAHECGCLPVIARMVMEHCIARLDVAMFNAILRESAHEIPTDPV SDPIVDSKVLPIPAGDLSFGSGAQLKNSVGNWSRWLTDMFGMDSDDALKEDQPNSQDD FKQNGDGESKSFLFLNALSDLLMLPKDMLMDRSIRNEVDF" mobile_element complement(28952183..28952466) /note="source:scaffold_2_CACTA_0245 1002 1289" /mobile_element_type="transposon:TIR/CACTA" gene complement(28956351..28961510) /locus_tag="TCM_024826" /note="dbxref CacaoGD:Thecc1EG024826" mRNA complement(join(28956351..28957562,28958970..28960410, 28961091..28961510)) /locus_tag="TCM_024826" /product="Pentatricopeptide repeat superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s05180.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033348001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1038t1" CDS complement(join(28957163..28957562,28958970..28960410, 28961091..28961406)) /locus_tag="TCM_024826" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein" /protein_id="EOY09401.1" /db_xref="Phytozome:GSVIVT01033348001" /db_xref="TAIR:AT3G13770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HL62" /translation="MAVQGLEMRFESYDMLLNACINKRRFREGQRVHAHMIKTRYLPP VYLRTRLIIFYGKCDCLREARHVLDEMPERNVVSWTAMISAYSQRGLASEALNLFVQM LRSDTEPNEFTFATVLTSCTGTFGFELGRQIHSFVIKRTLDTHIYVGSSLLDMYAKAG RIHEAREIFNCLPERDVVSCTAIISGYAQLGLDADALELFRRLNLEGMSANYVTYASV LTALSGLAALDLGKQVHNHVLRCQLPFYVVLQNSLIDMYSKCGNLIYSRRIFDNMPER TVISWNAMLVGYSKHGMGREVVELYRLMRNENKVKPDSVTLLGVLSGCSHGGMEDVGL QIFDEMVNGKDGVEPDIEHYGCVVDLLGRAGRVEEAFEFIKKMPFEPTAALWGSLLGA CRVHSNIDIGEFVGRRLLEIEPENAGNYVILSNLFASAGRWEDVRMVRDLMMEKAVKK DPGRSWIELDQTLHSFHASDRSHPRREEVLVKLKELSIKLKEAGYVPDLSCVLHDVDE EQKEKILLGHSEKLALTFGLMATSDGVPLRVIKNLRICVDCHNFSKFVSKIYTRQVSL RDKNRFHHIHGGVCSCGDYCSSTGQTNPPNTFESPNTLILTLQASATTTMALTTMLRQ RLLSRSFSSHAGPSRWTTPGHQERPNGYLFNRTPPPPGQSRKWEDWELPCYITSFLTI VILGVGLNAKPDLTIETWAHQKALEKLAAESSSSSD" mobile_element 28957823..28957886 /note="source:CACAO_PIF_E54_scaffold_3 8818 9008" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 28957887..28958139 /note="source:scaffold_4_CACTA_0506 6787 7049" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28958140..28958177 /note="source:CACAO_PIF_E54_scaffold_3 9009 9128" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(28961684..28968551) /locus_tag="TCM_024827" /note="dbxref CacaoGD:Thecc1EG024827" mRNA complement(join(28961684..28962506,28962596..28962927, 28967203..28967869,28968018..28968551)) /locus_tag="TCM_024827" /product="Pectin lyase-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g32550.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05170.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g06022t00001" CDS complement(join(28962019..28962506,28962596..28962927, 28967203..28967869,28968018..28968024)) /locus_tag="TCM_024827" /codon_start=1 /product="Pectin lyase-like superfamily protein" /protein_id="EOY09402.1" /db_xref="Phytozome:POPTR_0016s05170.1" /db_xref="TAIR:AT3G57790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4J3I0" /translation="MNVPCQYGETTCTRFQLYQTQISYYFPNQCRKQSKNMGAHPIPQ LTVVTLMFLPTIIQSHPSTYSTISVTDFGATGDGKHYDTSAIQSAIDTCHNSTTKPCY VTFPPGTYLTATVFLKSNVVLNIPKGSAILGGTKLEDYPKAWDRWYVILAENASDVGI TGGGVVDGQGSEFVVKFDKRKNVMVSWNQTGACWGDECRPRLVGFLDSTNVRVWNVTL TQPAYWCLHIVRCENTSIHDVSIYGDFYTPNNDGIDIEDSNNTLITRCHIDTGDDALC PKTYTSPLHNLTATNCWIRTKSSAIKLGSASWFEFKNLVFDNITIVDSHRGLGFQIRD GGNVSDITVSNINISTRYYDPSWWGRAEPIYVTTCPRDSNSAEGSISNVNFINITANS ENGIFLSGSKGGLLRNLRFINMNLTYKRWTNYVGGLVDYRPGCQGLVNHSAAGIIMEH IDGLDVENVNMRWFDGRTVQWDNPLDFTPSTVNNISLLNFHSGFYSQ" mobile_element 28966242..28966335 /note="source:scaffold_5_CACTA_0614 1 99" /mobile_element_type="transposon:TIR/CACTA" gene complement(28968467..28974057) /locus_tag="TCM_024828" /note="dbxref CacaoGD:Thecc1EG024828" mRNA complement(join(28968467..28968845,28969526..28969733, 28970554..28970625,28971255..28971323,28972766..28972831, 28972940..28973068,28973166..28973792)) /locus_tag="TCM_024828" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033350001" /inference="similar to AA sequence:Phytozome:Glyma03g29710.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14143t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14143t1" mRNA complement(join(28968591..28968656,28969648..28969733, 28970554..28970625,28971255..28971323,28972766..28972831, 28972940..28973068,28973166..28974057)) /locus_tag="TCM_024828" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033350001" /inference="similar to AA sequence:Phytozome:GSVIVT01033350001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc111t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14143t1" mRNA complement(join(28968591..28968845,28969602..28969733, 28970554..28970625,28971255..28971323,28972766..28972831, 28972940..28973068,28973166..28974057)) /locus_tag="TCM_024828" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033350001" /inference="similar to AA sequence:Phytozome:GSVIVT01033350001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc111t5; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14143t1" CDS complement(join(28968599..28968656,28969648..28969733, 28970554..28970625,28971255..28971323,28972766..28972831, 28972940..28973068,28973166..28973663)) /locus_tag="TCM_024828" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 3" /protein_id="EOY09405.1" /db_xref="Phytozome:GSVIVT01033350001" /db_xref="TAIR:AT3G57800.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N6V6" /translation="MEPKARTTETRSNGTTSDGDEAVALESLQFTDEIHRLISAPSTD NASSFTALLELPAPQAVELLHSPESAKLIAAPAPNVEDIKGSFHFPSNTGLIERAARF SVFAGDSNNNNNKTGSAETTSNNSSQNPQKEVKSEPAETESCQPLVSDPTVEKRSIKR KDREKKVKGSTKKSKTAANESSEDAEKLPYVHVRARRGQATDSHSLAERARREKINAR MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRIDFNLDSIFT AESGSLMDGNFPSMVMPLMWPEVQVNGNRQHWKPLISQDRRQEMSVCCY" CDS complement(join(28968808..28968845,28969526..28969733, 28970554..28970625,28971255..28971323,28972766..28972831, 28972940..28973068,28973166..28973663)) /locus_tag="TCM_024828" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1" /protein_id="EOY09403.1" /db_xref="Phytozome:Glyma03g29710.2" /db_xref="TAIR:AT3G57800.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N6V6" /translation="MEPKARTTETRSNGTTSDGDEAVALESLQFTDEIHRLISAPSTD NASSFTALLELPAPQAVELLHSPESAKLIAAPAPNVEDIKGSFHFPSNTGLIERAARF SVFAGDSNNNNNKTGSAETTSNNSSQNPQKEVKSEPAETESCQPLVSDPTVEKRSIKR KDREKKVKGSTKKSKTAANESSEDAEKLPYVHVRARRGQATDSHSLAERARREKINAR MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRIDFNLDSIFT AESGSLMDGNFPSMVMPLMWPEVQVNGNRQQYQQQWHFDAIQQPIWVREEVCNNYITP ENSLLSYDSSANSATLHSNQVKMEL" CDS complement(join(28968822..28968845,28969602..28969733, 28970554..28970625,28971255..28971323,28972766..28972831, 28972940..28973068,28973166..28973663)) /locus_tag="TCM_024828" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 2" /protein_id="EOY09404.1" /db_xref="Phytozome:GSVIVT01033350001" /db_xref="TAIR:AT3G57800.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N6V6" /translation="MEPKARTTETRSNGTTSDGDEAVALESLQFTDEIHRLISAPSTD NASSFTALLELPAPQAVELLHSPESAKLIAAPAPNVEDIKGSFHFPSNTGLIERAARF SVFAGDSNNNNNKTGSAETTSNNSSQNPQKEVKSEPAETESCQPLVSDPTVEKRSIKR KDREKKVKGSTKKSKTAANESSEDAEKLPYVHVRARRGQATDSHSLAERARREKINAR MKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRIDFNLDSIFT AESGSLMDGNFPSMVMPLMWPEVQVNGNRQQYQQQWHFDAIQQPIWQHCTRIK" mobile_element 28976892..28977430 /note="source:MITE_hAT_26 3 519" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(28977477..28980653) /note="source:INTACT1604F_F75_scaffold_10-int 1 3169" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(28982741..28982785) /note="source:CACAO_Mariner_E69_scaffold_2 4241 4287" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 28989422..28995498 /note="source:INTACT746_F84_scaffold_2-int 1 6082" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 28996453..28996482 /note="source:CACAO_M_E34420_F305_scaffold_5 1453 1515" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 28996483..28996551 /note="source:scaffold_10_CACTA_0130 1133 1197" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(28996500..28996569) /note="source:scaffold_3_CACTA_0384 747 808" /mobile_element_type="transposon:TIR/CACTA" mobile_element 28997093..28998304 /note="source:CACAO_on_E12_scaffold_2 2 1230" /mobile_element_type="transposon:TIR/hAT" gene complement(28998236..28999801) /locus_tag="TCM_024830" /note="dbxref CacaoGD:Thecc1EG024830" mRNA complement(28998236..28999801) /locus_tag="TCM_024830" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.27 coverage" CDS complement(28999160..28999456) /locus_tag="TCM_024830" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09406.1" /translation="MRVKLKQSSCSAVQCSLDHVKFSGPATLNRLCFGPIDETTVPYQ SWADTEHFGYLNIHIEDRGPLYHPATVSVCPAYRRQLDNSLPFFVTIKKHLLII" gene complement(29000707..29003853) /locus_tag="TCM_024831" /note="dbxref CacaoGD:Thecc1EG024831" mRNA complement(join(29000707..29001025,29002443..29002565, 29003265..29003446,29003527..29003667)) /locus_tag="TCM_024831" /product="Cornichon family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033351001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016093t2" /inference="similar to AA sequence:Phytozome:GSVIVT01033351001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00520t00001_C1; inference alignment:Newbler:10:TSA:cgbaP1_g00520t00001_C1" CDS complement(join(29000968..29001025,29002443..29002565, 29003265..29003446,29003527..29003601)) /locus_tag="TCM_024831" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG016093t2" /codon_start=1 /product="Cornichon family protein isoform 1" /protein_id="EOY09407.1" /db_xref="Phytozome:GSVIVT01033351001" /db_xref="TAIR:AT3G12180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C7D7" /translation="MAWDLIFWILCFFINIALFASTFYQLLSLSDLEVDHLNPFEASS RINAVVVPEFLLQGLLCALFLLTWHWFMFLLFLPLTAYHLMLYLNRKHLIDVTEVFRD IGTEKKYRYVKLGIYLVLFTVILFRLIISAFSSLLDEDEVHAF" mRNA complement(join(29002202..29002307,29002443..29002565, 29003265..29003446,29003527..29003853)) /locus_tag="TCM_024831" /product="Cornichon family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033351001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016093t2" /inference="similar to AA sequence:Phytozome:GSVIVT01033351001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02956t00002; inference alignment:Newbler:10:TSA:cgbaP1_g00520t00001_C1" CDS complement(join(29002232..29002307,29002443..29002565, 29003265..29003446,29003527..29003601)) /locus_tag="TCM_024831" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG016093t2" /codon_start=1 /product="Cornichon family protein, putative isoform 2" /protein_id="EOY09408.1" /db_xref="Phytozome:GSVIVT01033351001" /db_xref="TAIR:AT3G12180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C7D7" /translation="MAWDLIFWILCFFINIALFASTFYQLLSLSDLEVDHLNPFEASS RINAVVVPEFLLQGLLCALFLLTWHWFMFLLFLPLTAYHLMLYLNRKHLIDVTEVFRD IGTEKKYRYVKLGIYLVLFTVILFRSLAASISFFRSKFEELDLRSSHFY" mobile_element complement(29003502..29003581) /note="source:INTACT859F_F13_scaffold_5-int 3812 3886" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(29004901..29009766) /locus_tag="TCM_024834" /note="dbxref CacaoGD:Thecc1EG024834" mRNA complement(join(29004901..29005073,29005222..29005721, 29005835..29009766)) /locus_tag="TCM_024834" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:TAIR:AT2G21850.1.5" /inference="similar to AA sequence:Phytozome:POPTR_0016s05820.1" /note="quality class is strong, express is strong, homology is paralog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.76 coverage; weak similarity to Cysteine/Histidine-rich C1 domain family protein; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1452t3" CDS complement(29005956..29009696) /locus_tag="TCM_024834" /note="weak similarity to Cysteine/Histidine-rich C1 domain family protein" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09409.1" /db_xref="Phytozome:POPTR_0016s05820.1" /db_xref="TAIR:AT5G22355.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9P591" /translation="MSAKREGKREMVEHFSHQHLLESSWRRNKYDAARCSGCWKEVRD LGYCCPEFECKFYLHKTCAKLAPKINHPFHPPHPLILLAKAPYVRCFCNFCGWLCMGF VYRCAACEFHLDVNCANLQVSVAGNFEKLEHFSHEHPLIFNEKYNKKVYGDCQGCRKP LSGPIYRCLDCSKFDLHKECAELPLELNHPFHPSHPLILLPISPNFPSTVRICNFCHS ICAAFVYHCSSCNFYLDTGCALLKQFLAGKFLKLEYFCHKHPLTFFEMHKNEIKDPCS ACGKLLSGPIYSCIDCGFHLHKTCAQLPLKFDHPFHCFCEDLLVLQAEWLNPSQATCS FCNSGLRGLIYHCVSCKFNLHITCALLLPLNTEKTLVIQHFSHVHQLIFVEKHGDEVN GSCRGCGKVLSGPIYSCVECKFHLHKKCAQLPREIDHSSHRKHSLVLLAEPPSHQKGC SCYLCKKQCKGFVYYCSDCDFGNLLEDVEDVSLPRDIKVETHEHPFKLLLRPISFTCD FCGINGDRTPYVCSECDLVIHKNCIRLPSAIKIMRHPHRITFQHFLRQKKSNKRMCNI CQEEVNTEYGSYYCYICHQYIAHVRCATDDYIWDETNPDDEDQRPKGALSLITSVIEE VRHGEDVIAAVIKHAFHQHILILTLGGEVKDDRSCNGCMRPLSTPFFSCEQCQFFLHK KCVELPSVKQHPLHRHPLVLYKPNNAEYPRTCSACLQLHHGFTYNCEKCNFHIDIDCS LLSDTLKHESHGAHHLYLDHRYEGNCSASGEHITFRTGAYRCKHCESFALSFKCIKLP RTASYKYDKHLLTLTYFDRVDPNQCYCDICEEERDPKYWFYHCAYCDTSVHPQCVLGE LLYIKLGSIYIHHVHPHRLTFVRKIWDCPPCSICGELCINQALECTKLGCNFIIHWKC KNSSQASIQKQISYRTTQLDDEDQRLNVNEEIRFEEDGIVTSIKLPVHEHFLILGDEV KVDNICDACMKPVSAPFYGCERCLFFLHKNCAELPRQKRHPFHRHQLTLKESDPAVVD DVSTCSACLRSHHGFAYVCNRCEFQIDIQCSLLSDTLRHPSHEHLLLFHPNYTGHCSA CSSNIYDKGVYRCGSGCEFVLDFRCSTEPPKVKSKFHEHPVNLIYHDDSDQHYCGICE EKRHPKHWFYHCADCYNSFHPECVLGELPYIKLGSTYNYFGHRHFLTFVEKMNNSLPC NICRKLCKNQALECKKSECGFIIHWKCRGQGWQTVRPTKRRS" gene 29009877..29024310 /locus_tag="TCM_024835" /note="dbxref CacaoGD:Thecc1EG024835" mRNA join(29009877..29010028,29010137..29010370, 29011177..29011281,29011407..29011556,29012055..29012171, 29012774..29012884,29013071..29013133,29013229..29013355, 29013532..29013614,29014018..29014234,29021378..29021505, 29021823..29021897,29022042..29022162,29022653..29022815, 29023201..29023763,29023960..29024310) /locus_tag="TCM_024835" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033352001" /inference="similar to AA sequence:Phytozome:GSVIVT01033352001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6500t1" mRNA join(29010011..29010028,29010145..29010370, 29011177..29011246,29011407..29011556,29012055..29012171, 29012774..29012884,29013071..29013133,29013229..29013355, 29013532..29013614,29014018..29014234,29021378..29021505, 29021823..29021897,29022042..29022162,29022653..29022815, 29023201..29023771) /locus_tag="TCM_024835" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033352001" /inference="similar to AA sequence:Phytozome:GSVIVT01033352001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6500t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6500t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1099t11_C2" mRNA join(29010011..29010028,29010145..29010370, 29011177..29011246,29011407..29011556,29012055..29012171, 29012774..29012884,29013071..29013133,29013229..29013355, 29013532..29013614,29014018..29014234,29021378..29021505, 29021823..29021897,29022042..29022162,29023201..29023771) /locus_tag="TCM_024835" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033352001" /inference="similar to AA sequence:Phytozome:GSVIVT01033352001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6500t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6500t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1099t11_C2" CDS join(29010239..29010370,29011177..29011281, 29011407..29011556,29012055..29012171,29012774..29012884, 29013071..29013133,29013229..29013355,29013532..29013614, 29014018..29014234,29021378..29021505,29021823..29021897, 29022042..29022162,29022653..29022753) /locus_tag="TCM_024835" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY09410.1" /db_xref="Phytozome:GSVIVT01033352001" /db_xref="UniProtKB/TrEMBL:UniRef50_E1C9P1" /translation="MKLLSLNYDHKALPLKSIHSPKTTYPRTIQSCSLRQDLKGRTVA VVGLGTSGKAAARLALTRGASVIGIDQNENLSLLEQDPSFVTLTQTGLRTILGHFDWK LLNDADVVVVSPGVPLENYGLSCLLQSGKQVMSELDFAAEVLPKSVRILAVTGTNGKS TVVTYAGQMLSHFAIETFVGGNLGNPLSEVAFQCFKLPSEECKLKVAVVEVSSYQMEI PCVYFCPTVSVVLNLTPDHLERHKTMLSYAATKCRLFSHMTNTKLGLLSFGNQHLDKA IRKYWNKFNLAWIGAFPGVEIDMEAKIASFEVPDIGVASQLQLGGMRAKGKHNYCNAA VAALSVAGLDVGVDVEAINATIEKLRAPPHRMQIVCKDIHGLTWVDDSKATNVEAAYA GLTGLKGQKAVILLGGLAKVLHGPASNGFEQLIEPLKGHRCVITFGSSGSLIHDTLSD NGLSIPCIQASNLKDAVKHARKMAKHGDAIVLSPGCASIDEFKNFEHRGLVFQELALS S" CDS join(29012067..29012171,29012774..29012884, 29013071..29013133,29013229..29013355,29013532..29013614, 29014018..29014234,29021378..29021505,29021823..29021897, 29022042..29022162,29023201..29023295) /locus_tag="TCM_024835" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY09412.1" /db_xref="Phytozome:GSVIVT01033352001" /db_xref="UniProtKB/TrEMBL:UniRef50_E1C9P1" /translation="MSELDFAAEVLPKSVRILAVTGTNGKSTVVTYAGQMLSHFAIET FVGGNLGNPLSEVAFQCFKLPSEECKLKVAVVEVSSYQMEIPCVYFCPTVSVVLNLTP DHLERHKTMLSYAATKCRLFSHMTNTKLGLLSFGNQHLDKAIRKYWNKFNLAWIGAFP GVEIDMEAKIASFEVPDIGVASQLQLGGMRAKGKHNYCNAAVAALSVAGLDVGVDVEA INATIEKLRAPPHRMQIVCKDIHGLTWVDDSKATNVEAAYAGLTGLKGQKAVILLGGL AKVLHGPASNGFEQLIEPLKGHRCVITFGSSGSLIHDTLSDNGLSIPCIQASNLKDAV KHARKMAKHGRESKKSPYAFIMDAISSMQRELSCVFKGCF" CDS join(29012067..29012171,29012774..29012884, 29013071..29013133,29013229..29013355,29013532..29013614, 29014018..29014234,29021378..29021505,29021823..29021897, 29022042..29022162,29022653..29022753) /locus_tag="TCM_024835" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY09411.1" /db_xref="Phytozome:GSVIVT01033352001" /db_xref="UniProtKB/TrEMBL:UniRef50_E1C9P1" /translation="MSELDFAAEVLPKSVRILAVTGTNGKSTVVTYAGQMLSHFAIET FVGGNLGNPLSEVAFQCFKLPSEECKLKVAVVEVSSYQMEIPCVYFCPTVSVVLNLTP DHLERHKTMLSYAATKCRLFSHMTNTKLGLLSFGNQHLDKAIRKYWNKFNLAWIGAFP GVEIDMEAKIASFEVPDIGVASQLQLGGMRAKGKHNYCNAAVAALSVAGLDVGVDVEA INATIEKLRAPPHRMQIVCKDIHGLTWVDDSKATNVEAAYAGLTGLKGQKAVILLGGL AKVLHGPASNGFEQLIEPLKGHRCVITFGSSGSLIHDTLSDNGLSIPCIQASNLKDAV KHARKMAKHGDAIVLSPGCASIDEFKNFEHRGLVFQELALSS" mobile_element 29014288..29014349 /note="source:CACAO_M_E49539_F76_scaffold_7 3088 3154" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(29014305..29014386) /note="source:scaffold_2_CACTA_0248 11581 11657" /mobile_element_type="transposon:TIR/CACTA" mobile_element 29014351..29017346 /note="source:CACAO_M_S_E16721_F36_scaffold_2 14768 17755" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 29017336..29017388 /note="source:CACAO_M_E57346_F74_scaffold_9 4106 4158" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(29017386..29019529) /note="source:CACAO_M_S_E16721_F36_scaffold_2 14769 16907" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(29019496..29019576) /note="source:INTACT726_F314_scaffold_5-int 1 75" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 29020395..29020430 /note="source:INTACT1_F64_scaffold_3-int 1193 1228" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 29020399..29021227 /note="source:CACAO_MITE135_scaffold_9 1 836" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(29021043..29021256) /note="source:CACAO_Again_on_E34_scaffold_1 674 883" /mobile_element_type="transposon:TIR/hAT" mobile_element 29023860..29024071 /note="source:scaffold_9_CACTA_0946 17765 17998" /mobile_element_type="transposon:TIR/CACTA" mobile_element 29024072..29024095 /note="source:CACAO_Mariner_E220_scaffold_9 9046 9287" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene 29024264..29029324 /locus_tag="TCM_024837" /note="dbxref CacaoGD:Thecc1EG024837" mRNA join(29024264..29024533,29026221..29026646, 29026716..29026814,29026936..29027057,29027402..29027442, 29028415..29028513,29028753..29028907,29029100..29029324) /locus_tag="TCM_024837" /product="Cysteine proteinases superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s05130.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05130.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6559t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6559t3; inference alignment:Newbler:10:TSA:cgbaL_g00959t00003" mRNA join(29024324..29024533,29026221..29026814, 29026936..29027057,29027402..29027442,29028415..29028513, 29028753..29029090) /locus_tag="TCM_024837" /product="Cysteine proteinases superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s05130.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05130.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01704t00001; alternateUTRof:Thecc1EG024837t4; inference alignment:Newbler:10:TSA:cgbaL_g00959t00003; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6559t3" mRNA join(29024377..29024533,29025410..29025557, 29026221..29026814,29026936..29027057,29027402..29027442, 29028415..29028513,29028753..29029090) /locus_tag="TCM_024837" /product="Cysteine proteinases superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s05130.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05130.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00959t00001; inference alignment:Newbler:10:TSA:cgbaL_g00959t00003; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6559t3" mRNA join(29024377..29024533,29025410..29025557, 29026221..29026646,29026716..29026814,29026936..29027057, 29027402..29027442,29028415..29028513,29028753..29029090) /locus_tag="TCM_024837" /product="Cysteine proteinases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s05130.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05130.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00959t00003; inference alignment:Newbler:10:TSA:cgbaL_g00959t00003" mRNA join(29024548..29024652,29025410..29025557, 29026221..29026814,29026936..29027057,29027402..29027442, 29028415..29028513,29028753..29029090) /locus_tag="TCM_024837" /product="Cysteine proteinases superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s05130.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05130.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00959t00002; alternateUTRof:Thecc1EG024837t4; inference alignment:Newbler:10:TSA:cgbaL_g00959t00003; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6559t3" mRNA join(29024548..29024652,29025410..29025557, 29026221..29026646,29026716..29026814,29026936..29027057, 29027402..29027442,29028415..29028513,29028753..29029090) /locus_tag="TCM_024837" /product="Cysteine proteinases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s05130.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05130.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00959t00004; alternateUTRof:Thecc1EG024837t1; inference alignment:Newbler:10:TSA:cgbaL_g00959t00003; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6559t3" mRNA join(29025420..29025557,29026221..29026646, 29026716..29026814,29026936..29027057,29027402..29027442, 29028753..29028907,29029100..29029324) /locus_tag="TCM_024837" /product="Cysteine proteinases superfamily protein isoform 7" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s05130.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05130.1" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6559t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6559t3; inference alignment:Newbler:10:TSA:cgbaL_g00959t00003" CDS join(29026232..29026646,29026716..29026814, 29026936..29027057,29027402..29027442,29028415..29028513, 29028753..29028907,29029100..29029143) /locus_tag="TCM_024837" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Cysteine proteinases superfamily protein isoform 3" /protein_id="EOY09415.1" /db_xref="Phytozome:POPTR_0016s05130.1" /db_xref="TAIR:AT3G57810.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9II34" /translation="MMVCSPISTCAKNVVHLRGHMGSSLCSVISCQPSSSCYYFSYSG HPKTKYTDLSVSYTTSGSPAVGYRAFQAGCFRSSRRSRKLQSLVVKESISDKTKQKRQ LEISWPGQSMKMKFLLPKQGTLQKFKCTAGPISWSQEAAGAKEDKQDDCESSHAKFSH GKKVYTDYSVIGIPGDGRCMFRSVAHGACLRSGKSAPSEHVQRELADDLRAKVADEFI KRRKETEWFVEGNFDAYVSQIRKPHVWGGEPELFMASHVLQMPITVYMYDKGAGGLIA IAEYGQEYGTENPIRVLYHGFGHYDALQMRGRRSVTVDHHLIHAFEEY" CDS join(29026232..29026646,29026716..29026814, 29026936..29027057,29027402..29027442,29028753..29028907, 29029100..29029143) /locus_tag="TCM_024837" /note="encoded by transcript variant 7; alternatively spliced" /codon_start=1 /product="Cysteine proteinases superfamily protein isoform 7" /protein_id="EOY09419.1" /db_xref="Phytozome:POPTR_0016s05130.1" /db_xref="TAIR:AT3G57810.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9II34" /translation="MMVCSPISTCAKNVVHLRGHMGSSLCSVISCQPSSSCYYFSYSG HPKTKYTDLSVSYTTSGSPAVGYRAFQAGCFRSSRRSRKLQSLVVKESISDKTKQKRQ LEISWPGQSMKMKFLLPKQGTLQKFKCTAGPISWSQEAAGAKEDKQDDCESSHAKFSH GKKVYTDYSVIGIPGDGRCMFRSVAHGACLRSGKSAPSEHVQRELADDLRAKVADEFI KRRKETEWMPITVYMYDKGAGGLIAIAEYGQEYGTENPIRVLYHGFGHYDALQMRGRR SVTVDHHLIHAFEEY" CDS join(29026232..29026814,29026936..29027057, 29027402..29027442,29028415..29028513,29028753..29028930) /locus_tag="TCM_024837" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Cysteine proteinases superfamily protein isoform 4" /protein_id="EOY09416.1" /db_xref="Phytozome:POPTR_0016s05130.1" /db_xref="TAIR:AT3G57810.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9II34" /translation="MMVCSPISTCAKNVVHLRGHMGSSLCSVISCQPSSSCYYFSYSG HPKTKYTDLSVSYTTSGSPAVGYRAFQAGCFRSSRRSRKLQSLVVKESISDKTKQKRQ LEISWPGQSMKMKFLLPKQGTLQKFKCTAGPISWSQGCASVGLVFGLLVCYSSSEPVH AEAAGAKEDKQDDCESSHAKFSHGKKVYTDYSVIGIPGDGRCMFRSVAHGACLRSGKS APSEHVQRELADDLRAKVADEFIKRRKETEWFVEGNFDAYVSQIRKPHVWGGEPELFM ASHVLQMPITVYMYDKGAGGLIAIAEYGQEYGTENPIRVLYHGFGHYDALQMRGRRSG KSKLQL" CDS join(29026232..29026814,29026936..29027057, 29027402..29027442,29028415..29028513,29028753..29028930) /locus_tag="TCM_024837" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Cysteine proteinases superfamily protein isoform 4" /protein_id="EOY09417.1" /db_xref="Phytozome:POPTR_0016s05130.1" /db_xref="TAIR:AT3G57810.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9II34" /translation="MMVCSPISTCAKNVVHLRGHMGSSLCSVISCQPSSSCYYFSYSG HPKTKYTDLSVSYTTSGSPAVGYRAFQAGCFRSSRRSRKLQSLVVKESISDKTKQKRQ LEISWPGQSMKMKFLLPKQGTLQKFKCTAGPISWSQGCASVGLVFGLLVCYSSSEPVH AEAAGAKEDKQDDCESSHAKFSHGKKVYTDYSVIGIPGDGRCMFRSVAHGACLRSGKS APSEHVQRELADDLRAKVADEFIKRRKETEWFVEGNFDAYVSQIRKPHVWGGEPELFM ASHVLQMPITVYMYDKGAGGLIAIAEYGQEYGTENPIRVLYHGFGHYDALQMRGRRSG KSKLQL" CDS join(29026232..29026814,29026936..29027057, 29027402..29027442,29028415..29028513,29028753..29028930) /locus_tag="TCM_024837" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Cysteine proteinases superfamily protein isoform 4" /protein_id="EOY09418.1" /db_xref="Phytozome:POPTR_0016s05130.1" /db_xref="TAIR:AT3G57810.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9II34" /translation="MMVCSPISTCAKNVVHLRGHMGSSLCSVISCQPSSSCYYFSYSG HPKTKYTDLSVSYTTSGSPAVGYRAFQAGCFRSSRRSRKLQSLVVKESISDKTKQKRQ LEISWPGQSMKMKFLLPKQGTLQKFKCTAGPISWSQGCASVGLVFGLLVCYSSSEPVH AEAAGAKEDKQDDCESSHAKFSHGKKVYTDYSVIGIPGDGRCMFRSVAHGACLRSGKS APSEHVQRELADDLRAKVADEFIKRRKETEWFVEGNFDAYVSQIRKPHVWGGEPELFM ASHVLQMPITVYMYDKGAGGLIAIAEYGQEYGTENPIRVLYHGFGHYDALQMRGRRSG KSKLQL" CDS join(29026232..29026646,29026716..29026814, 29026936..29027057,29027402..29027442,29028415..29028513, 29028753..29028930) /locus_tag="TCM_024837" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Cysteine proteinases superfamily protein isoform 1" /protein_id="EOY09413.1" /db_xref="Phytozome:POPTR_0016s05130.1" /db_xref="TAIR:AT3G57810.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9II34" /translation="MMVCSPISTCAKNVVHLRGHMGSSLCSVISCQPSSSCYYFSYSG HPKTKYTDLSVSYTTSGSPAVGYRAFQAGCFRSSRRSRKLQSLVVKESISDKTKQKRQ LEISWPGQSMKMKFLLPKQGTLQKFKCTAGPISWSQEAAGAKEDKQDDCESSHAKFSH GKKVYTDYSVIGIPGDGRCMFRSVAHGACLRSGKSAPSEHVQRELADDLRAKVADEFI KRRKETEWFVEGNFDAYVSQIRKPHVWGGEPELFMASHVLQMPITVYMYDKGAGGLIA IAEYGQEYGTENPIRVLYHGFGHYDALQMRGRRSGKSKLQL" CDS join(29026232..29026646,29026716..29026814, 29026936..29027057,29027402..29027442,29028415..29028513, 29028753..29028930) /locus_tag="TCM_024837" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Cysteine proteinases superfamily protein isoform 1" /protein_id="EOY09414.1" /db_xref="Phytozome:POPTR_0016s05130.1" /db_xref="TAIR:AT3G57810.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9II34" /translation="MMVCSPISTCAKNVVHLRGHMGSSLCSVISCQPSSSCYYFSYSG HPKTKYTDLSVSYTTSGSPAVGYRAFQAGCFRSSRRSRKLQSLVVKESISDKTKQKRQ LEISWPGQSMKMKFLLPKQGTLQKFKCTAGPISWSQEAAGAKEDKQDDCESSHAKFSH GKKVYTDYSVIGIPGDGRCMFRSVAHGACLRSGKSAPSEHVQRELADDLRAKVADEFI KRRKETEWFVEGNFDAYVSQIRKPHVWGGEPELFMASHVLQMPITVYMYDKGAGGLIA IAEYGQEYGTENPIRVLYHGFGHYDALQMRGRRSGKSKLQL" mobile_element complement(29027844..29027992) /note="source:CACAO_on_E22_A_scaffold_2 4875 5023" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 29030486..29036764 /locus_tag="TCM_024838" /note="dbxref CacaoGD:Thecc1EG024838" mRNA join(29030486..29030905,29031924..29033533, 29035279..29036764) /locus_tag="TCM_024838" /product="Leucine-rich repeat protein kinase family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g32590.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010797t1" /inference="similar to AA sequence:ricco:28431.m000050" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6561t1" CDS join(29032237..29033533,29035279..29035916) /locus_tag="TCM_024838" /note="dbxref ricco:28431.m000050; paralog of Thecc1EG010797t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein" /protein_id="EOY09420.1" /db_xref="TAIR:AT3G57830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M2R4" /translation="MVVAFLKVVSFLFFFTSLVSSLNSDGLSLLALKAAIESDPTSSL DKWSESDSTPCHWPGIACTRNRVTSIFLPNKGLTGYIPSELGLLDTLTRLSLSQNNFS KPIPSRLFNATNLVYIDLSHNSLSGSVPPQIKSLENLTHLDLSSNSLNGSLPESLVEL KSLTGTLNLSCNKFSGEIPASYGEFPVMISLDLRHNNLTGKVPQVGSLLNQGPTAFSG NPNLCGFPLGNLCPEAQNPRAFVNPEENPENPNGFRPTFDDGNGEKRKEKNVSVAVPL ISGVSVVIGAVSIFVWLFRRKWKPEEDKMGKEKKGEAVDEEGQKGKFVVVDEGFNLEL EDLLRASAYVAGKSRSGIVYKVVAGRGSGTVGSTIVAVRRLGEGDTTWKFKEFEAEVE AMGRVNHPNVVRLRAYYYANDEKLLVTDFVRNGSLYAVLHEGPSNNLPPLPWAARLKI VQGTARGLMYIHEYSPRKYVHGNLKSTKILLDNELQPYISGFGLTRLVSGTFKYASSI TKKLNPNQTIATSAMGSRISTPNSYLAPEARVFGSKFTQKCDVYSFGIVLLEILTGRL ADAGPENDDKGLEGLVRKAFREERPLSEIIDPTLLTEVYAKKQVVAAFHIALNCTELD PELRPRMRIVSESLDRIKSR" mobile_element 29036868..29037011 /note="source:scaffold_5_CACTA_0586 2281 2439" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29037433..29037514) /note="source:scaffold_5_CACTA_0586 2321 2418" /mobile_element_type="transposon:TIR/CACTA" gene 29037985..29039652 /locus_tag="TCM_024839" /note="dbxref CacaoGD:Thecc1EG024839" mRNA join(29037985..29038236,29038545..29039652) /locus_tag="TCM_024839" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is ortholog weak, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.38 coverage" CDS join(29038038..29038236,29038545..29038678) /locus_tag="TCM_024839" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09421.1" /translation="MTTLTLQPQHLNHLLFLNIFFLADLNDNTTSLPTYKTISALLPC RRHLLCHYAIAMSSPSSSLMPRATICVLLTVVVVACHWPLHQLDIQNAFLHGNLNEEV YMQLPLGY" gene complement(29038088..29039302) /locus_tag="TCM_024840" /note="dbxref CacaoGD:Thecc1EG024840" mRNA complement(29038088..29039302) /locus_tag="TCM_024840" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.67 coverage" CDS complement(29039058..29039261) /locus_tag="TCM_024840" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09422.1" /translation="MGTMKISHSALGTKHPLYDIAALKHFFLVVLANSIIEVALLDGA RSMPVTLLFVLQVPLTPIACLHP" mobile_element 29040596..29041795 /note="source:scaffold_5_CACTA_0585 5435 6660" /mobile_element_type="transposon:TIR/CACTA" mobile_element 29043936..29045991 /note="source:INTACT261_F189_scaffold_2-int 4068 6149" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 29045984..29048304 /note="source:INTACT261_F189_scaffold_2-int 8860 11180" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 29048346..29048384 /note="source:INTACT261_F189_scaffold_2-int 11131 11169" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 29048407..29049080 /note="source:scaffold_5_CACTA_0585 5985 6670" /mobile_element_type="transposon:TIR/CACTA" mobile_element 29050259..29050951 /note="source:scaffold_4_CACTA_0482 16795 17482" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29050959..29051593) /note="source:scaffold_4_CACTA_0482 16857 17500" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29051595..29051636) /note="source:scaffold_2_CACTA_0243 6531 6572" /mobile_element_type="transposon:TIR/CACTA" gene 29053626..29056979 /locus_tag="TCM_024842" /note="dbxref CacaoGD:Thecc1EG024842" mRNA join(29053626..29054700,29055469..29055806, 29055925..29056432,29056511..29056579,29056668..29056691) /locus_tag="TCM_024842" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s05640.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s05640.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc684t4; inference alignment:Newbler:10:TSA:cgbaB_g01827t00001" mRNA join(29053689..29054746,29055114..29055205, 29055469..29055806,29055925..29056095,29056367..29056432, 29056511..29056579,29056668..29056979) /locus_tag="TCM_024842" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s05640.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s05640.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01827t00001" CDS join(29054268..29054746,29055114..29055205, 29055469..29055806,29055925..29056095,29056367..29056432, 29056511..29056579,29056668..29056739) /locus_tag="TCM_024842" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1" /protein_id="EOY09423.1" /db_xref="Phytozome:POPTR_0006s05640.1" /db_xref="TAIR:AT2G42280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AWW8" /translation="MDSSTHQSYQNQNNQPNSGLLRFRSAPSSLLANFTNNLDCGVNK GSFESDRLISRFMNSSSGNSEIEDKSGTEVGVNYANSQQSYSGLPPHYPRQSSAASSS AMDSSYELLGMDHHSQGKPITSSLMRQSSSPPGLFTNLSVQNGVVLVLIYDYQFFLLS EALIGKRGDLRNSLIIVFEFLVGYGGTRTRGYASMKGLGNYCGVNGTNGELSPSSNRL KNQICFSSRLPSSLGMLSQISEIGNESIRTDGPDDGKLGNSNSDARFYGTGYQYGSWN DSAHLTKNFSGLKRAQDNDRKFFSTNQNGDLGNCVHVLSHHLSLPKTSNEMVAMEKFL HFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDL AVEYIKDLQKQFKTLSDNRANCKCLHIQKPVPNQIV" CDS join(29054268..29054700,29055469..29055806, 29055925..29056290) /locus_tag="TCM_024842" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 2" /protein_id="EOY09424.1" /db_xref="Phytozome:POPTR_0006s05640.1" /db_xref="TAIR:AT2G42280.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AWW8" /translation="MDSSTHQSYQNQNNQPNSGLLRFRSAPSSLLANFTNNLDCGVNK GSFESDRLISRFMNSSSGNSEIEDKSGTEVGVNYANSQQSYSGLPPHYPRQSSAASSS AMDSSYELLGMDHHSQGKPITSSLMRQSSSPPGLFTNLSVQNGYASMKGLGNYCGVNG TNGELSPSSNRLKNQICFSSRLPSSLGMLSQISEIGNESIRTDGPDDGKLGNSNSDAR FYGTGYQYGSWNDSAHLTKNFSGLKRAQDNDRKFFSTNQNGDLGNCVHVLSHHLSLPK TSNEMVAMEKFLHFQDSVPCKIRAKRGCATHPRSIAERVKIPTFQTCYIPALTNCLLI GYQAIISNFTVFYMIRDQIRNYQIILIHMQKQTNIEVCLHTQAT" gene 29057036..29062667 /locus_tag="TCM_024843" /note="dbxref CacaoGD:Thecc1EG024843" mRNA join(29057036..29057318,29058086..29058437, 29062096..29062667) /locus_tag="TCM_024843" /product="RAB GTPase A4D" /inference="alignment:exonerate- protein:2:TAIR:AT3G12160.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005926t1" /inference="similar to AA sequence:ricco:29216.m000260" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g13970t00001" CDS join(29058211..29058437,29062096..29062537) /locus_tag="TCM_024843" /note="dbxref ricco:29216.m000260; paralog of Thecc1EG005926t1" /codon_start=1 /product="RAB GTPase A4D" /protein_id="EOY09425.1" /db_xref="TAIR:AT3G12160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HFE2" /translation="MSNFYGDYNQKIDYVFKVVLIGDSAVGKSQLLARFARNEFSVDS KATIGVEFQTKTLAIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMTKRQS FDHMARWLEELRGHADKNIVIMLIGNKCDLGSLRAVPTEDAQEFAQRENLFFMETSAL ESTNVETAFLTVLTEIYRIISKKTLAANDELDPNGNSGLLKGTRIIVPNQELQTERKG GCCG" gene 29063710..29066361 /locus_tag="TCM_024844" /note="dbxref CacaoGD:Thecc1EG024844" mRNA join(29063710..29063778,29063905..29064307, 29065552..29066361) /locus_tag="TCM_024844" /product="Uv-b-insensitive 4, putative" /inference="alignment:exonerate- protein:2:ricco:29216.m000259.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027257t1" /inference="similar to AA sequence:ricco:29216.m000259" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6546t1" CDS join(29063924..29064307,29065552..29065929) /locus_tag="TCM_024844" /note="dbxref ricco:29216.m000259; paralog of Thecc1EG027257t1" /codon_start=1 /product="Uv-b-insensitive 4, putative" /protein_id="EOY09426.1" /db_xref="TAIR:AT2G42260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O48533" /translation="MADSRDRITRAVDIAEVFARRRSGPLGILSDEAQELLASPVQRP VTRRPMGVAVTTSTSRGGGLRRGSSFGTPRSGIRIGRNLYRSPAPGRENAPMGVMGRG RGRLTGSVLPSWYPRTPLRDITAVVRAIERRRARLGEGERQILESPTSQDERVLNSNL SSGVQLEHNFSTPASTARMKPCPQSVRNVSKILLNVTNQNGEESEILTPQKKLLNSID TVEKAVLEELQKMKRTPSAKKAERQMKVRTLMSMR" mobile_element complement(29065287..29065407) /note="source:CACAO_PIF_E144_scaffold_10 3538 3658" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 29066794..29072057 /locus_tag="TCM_024845" /note="dbxref CacaoGD:Thecc1EG024845" mRNA join(29066794..29066864,29069255..29070256, 29071277..29072057) /locus_tag="TCM_024845" /product="Cytochrome P450, family 712, subfamily A, polypeptide 1" /inference="alignment:exonerate- protein:2:ricco:29216.m000258" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024801t1" /inference="similar to AA sequence:ricco:29216.m000258" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6518t3" mobile_element 29068171..29068297 /note="source:CACAO_on_E683_scaffold_9 1503 1617" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 29068461..29068527 /note="source:scaffold_4_CACTA_0511 3160 3220" /mobile_element_type="transposon:TIR/CACTA" mobile_element 29068918..29068983 /note="source:CACAO_PIF_E119_scaffold_3 2584 2651" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(29068930..29068999) /note="source:CACAO_M_E5326_F22_scaffold_2 21100 21167" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(29069336..29070256,29071277..29071906) /locus_tag="TCM_024845" /note="dbxref ricco:29216.m000258; paralog of Thecc1EG024801t1" /codon_start=1 /product="Cytochrome P450, family 712, subfamily A, polypeptide 1" /protein_id="EOY09427.1" /db_xref="TAIR:AT2G42250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O48532" /translation="MAIISSDILYYPLFLIWFITALLVHSFIKRFLKPSRTRVPDPPS PPALPFVGHLHLVSSVLPKSFQALAGRYGPLMQIRLGASSCVVVSNATVAKEIFKTQE LNFSSRPEFGSSEYFIYRGSRFVLAQYGDYWRFMKKLCMTRLLAVPQLDLFTDIRDQE KVKLVESVMKCCKEGKPCDLSSELTTLTNNTICRMAMSTRCSGNDNDAAEIKELIRTC LQLSGKISVGDVLGPLKILDFSGNGQKLKAALLKYDRLADRIIKEHQEEAMKGLDKNQ RKDLLDILLEVCKDPTAEVKISMKDIKSFLLDIFMAGTDTSSAAMQWAMGKLINHPKA FQKLRDEINSVVGPNRLVKESDVPNLPYLRAVVRETLRLHPSAPLIIRECAEDCKVNG FIVKAKTRVLVNVFAVMRDPDSWTNPNEFDPERFLESSDERIGEHQMEFKGQNFRYLP FGSGRRGCPGASLAMLVMHAAVGSLVQCFDWKVKDGEKVDLSLGSGFASEMARPLVCY PIARFNPF" mobile_element 29072908..29072982 /note="source:CACAO_M_E3248_F5_scaffold_1 3668 3745" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 29073941..29076882 /locus_tag="TCM_024846" /note="dbxref CacaoGD:Thecc1EG024846" mRNA join(29073941..29074892,29075725..29076882) /locus_tag="TCM_024846" /product="Cytochrome P450, putative" /inference="alignment:exonerate- protein:2:ricco:29216.m000257" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024847t1" /inference="similar to AA sequence:ricco:29216.m000257" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS join(29073981..29074892,29075725..29076363) /locus_tag="TCM_024846" /note="dbxref ricco:29216.m000257; paralog of Thecc1EG024847t1" /codon_start=1 /product="Cytochrome P450, putative" /protein_id="EOY09428.1" /db_xref="TAIR:AT5G06905.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T2D2" /translation="MATSTRLLHYSNPFFVSIISIIIVYLLIKLCTKPKSSVHYPPSP LALPIIGHLHLLSSSLPKSFQTLARRYGPLMRIHIGQSIFVVVSDAAVAKEVLRIHEG EFASRFEFGPAEYNIYKDAGFITSPYGTYWRFMKKLCMTKLFSGPQLDRFNHIRKEEI MKLLQSLMKRSREGKWCDLSAELASLTNNLIFRMAMGKRFSKDGNEANEMWKLVVEIM GLAAKLGVNEVHGLLKKIDLFGNGKKLREALERYDRLVEEIIKDYEENGLDIGGGNED LMHILLETYREKNAELKITRDQIKYFILELFIASIDTSSAAIQWAMAELINHPKVFKK VREEIDSVVKSNRLVNESDVPNLPYLQAIAKETLRLHSPVPIFHRECTKDCKINGFDL QVKDRVLINAYAIMRHPEAWSDPDKFLPERFLYNSSGENNGEYLMEIKDQGFWFLPFG GGRRGCAGSLHAYLVTHGTVGALVQCFDWKTKDGEKVDISVGSGFSGAMALPMECYPV LRFDPFQK" gene 29076931..29079522 /locus_tag="TCM_024847" /note="dbxref CacaoGD:Thecc1EG024847" mRNA join(29076931..29078029,29078622..29079522) /locus_tag="TCM_024847" /product="Cytochrome P450, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s05700.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024846t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05060.1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(29077118..29078029,29078622..29079233) /locus_tag="TCM_024847" /note="paralog of Thecc1EG024846t1" /codon_start=1 /product="Cytochrome P450, putative" /protein_id="EOY09429.1" /db_xref="Phytozome:POPTR_0016s05060.1" /db_xref="TAIR:AT5G06905.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T2D2" /translation="MAPTVMNYFYHFLILIISTLLLCFLVKSFRNFKSKAKYPPSPPA LPIIGHIHLLKSGLPTSFEALANRYGPLMQIRVGATNFVVASDAKSAQEILRTFDTDF ASKFQPGPTTYHIYKDSSFTNAPYGAYWRFVKKLCMTKLFTGSQLDRFIHIREQETST LLKSLLKRSKEGEPCDLAEELTALTNNMIYRMAMGRRCSKNPNQAAEIRKFITDSMKY AAKFHFGEVFGPLKKLDLFGNGKRLKMSLKGYDQLMEQIMKDYHDNELKNCENDQEKD VMDILLETYKDTSAEVKLTRDQIKNFFMELFMAGVDTTAAAIRWAMAELIDHPHIFKK LREEIDSVVGKNRLIKESDAPKLPYLQAVVKEILRLHPPGPLLRRLSNKDSKITGFDL REGTRVFINVYQIMRDPNIYKEPEKFLPERFLGNSTEIKGQDFHYLPFGSGRRACPGA SHAMFVMHATIGALIQCFDWKEKDLEKTDTELGAGYSGAFALPLVCYPITRFDPFEA" mobile_element complement(29082192..29082279) /note="source:INTACT38_F18_scaffold_9-int 4919 5002" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 29082599..29083065 /note="source:scaffold_7_CACTA_0779 12217 12700" /mobile_element_type="transposon:TIR/CACTA" gene 29084221..29086715 /locus_tag="TCM_024848" /note="dbxref CacaoGD:Thecc1EG024848" mRNA join(29084221..29085295,29085477..29086715) /locus_tag="TCM_024848" /product="Cytochrome P450, family 93, subfamily D, polypeptide 1, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s05710.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024850t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s05710.1" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.30 coverage" CDS join(29084384..29085295,29085477..29086127) /locus_tag="TCM_024848" /note="paralog of Thecc1EG024850t1" /codon_start=1 /product="Cytochrome P450, family 93, subfamily D, polypeptide 1, putative" /protein_id="EOY09430.1" /db_xref="Phytozome:POPTR_0006s05710.1" /db_xref="TAIR:AT5G06900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N6W5" /translation="MSDLGDHAILVTVCLATIVLFLAIFAKTRAKGRRPPSPPALPII GHLHLLRPIPHQGLHKISTRYGPIVSFYLGSKHCVLVSTPDIAEEFLKTNEASYLDRP KMANFDYLTYGTSDFSTAPYGPRWKLMKKLCMSELLGPRTLEKLLPIRREEIRSFLKM TKKKAEKGEPIDVVAELMTLTNNTISRMMVSYRCSGDENKADEIRKMMREMNGLGTKF NLADVIWFCKNLDLQGFRKRLVEVRDRYDTMMERIIKEHEEERRKRKEMGNESDTVKD LLDILLDIYEDESAEVRLTRENIKAFILNLFGAGTDTSSTTMGWGLAELINNPNVMEK ARQEIDSVVGKKRILEESDVANLPYLQAVVKETLRLHPSGPFIVRESTKACVIAGYEI PADTRLYVNVWSLGRNTKQWKNHLEFRPERFLNSEEWQGKSQWLDVMGQDFNLLPFGS GRRSCPGASLALSIVSTVLGCMIQCFEWKLGNGGNGRADMEETDGMTLLRANDLLCFP VARLSPFPSVEE" mobile_element 29086115..29091155 /note="source:INTACT122_F148_scaffold_5-int 1 5041" /mobile_element_type="retrotransposon:LTR/Copia" gene 29086946..29093320 /locus_tag="TCM_024849" /note="dbxref CacaoGD:Thecc1EG024849" mRNA join(29086946..29087525,29087603..29088361, 29088824..29088950,29090021..29090125,29091603..29092120, 29093239..29093320) /locus_tag="TCM_024849" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008822t1" /inference="similar to AA sequence:Phytozome:GSVIVT01037631001" /note="quality class is strong-expresste, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.75 coverage" CDS join(29087080..29087525,29087603..29088361, 29088824..29088950,29090021..29090125,29091603..29091650) /locus_tag="TCM_024849" /note="paralog of Thecc1EG008822t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09431.1" /db_xref="Phytozome:GSVIVT01037631001" /translation="MLRMEDNENIRDFYGKMMGLVNQLRLLGRDITEERLVNKMLVSL LEKYESKVSSLEDSRDLAQVTLKELVNALEVLEQRRVFRQRSAADFALVAKTKNVKMS GNSFKGSAVDKKSKGKNFGENRQGDKKKEFPPCPHYKKTNHTEKFCCECKAAVVEQVK EDTDEVIFMATIRDDSSKTNIWLLNSACSHHLTGNKSLFTTLDTSFKSKVKIGDGNYL DILGIGTVNVDTVSRSKTIISVHYVPSANHNLLSVGQLGKEHYALLFKDEVCIVIYPN GDELCTVAMKNNCYPLNLASIAHMALYNELDMSEIWHRKFGHVNYSFLSFMSLENLVE GLLGITKPNKLCSACQFEKQSRKPFPKVSRWKSTRKLELVHIDLSGPMKTLSLSGSKF YIVFIDDFTRLYDPKLNKVFVSRDVVFDEDQSWNWPNARANQFDFTIVVDNVDPSEIH FATAKRVLRYVKGIVDYGLVYMKQKSSQLQKRLILLHPEAANCV" mobile_element 29092576..29092661 /note="source:scaffold_5_CACTA_0586 1127 1201" /mobile_element_type="transposon:TIR/CACTA" gene 29093755..29096682 /locus_tag="TCM_024850" /note="dbxref CacaoGD:Thecc1EG024850" mRNA join(29093755..29094223,29094398..29095284, 29095656..29096682) /locus_tag="TCM_024850" /product="Cytochrome P450 93A1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s05710.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024852t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s05710.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2088t1" CDS join(29094055..29094223,29094398..29095284, 29095656..29096297) /locus_tag="TCM_024850" /note="paralog of Thecc1EG024852t1" /codon_start=1 /product="Cytochrome P450 93A1" /protein_id="EOY09432.1" /db_xref="Phytozome:POPTR_0006s05710.1" /db_xref="TAIR:AT5G06900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N6W5" /translation="MRNPIASAFRNTSHYISSVTAYESEGEGSTAELKQILLPLMAAF TSLFTIKLAGTINYIIVFLIWLITIIFLRAILSKKRGKAHLPPSPRALPIIGHMHLIG PIPHQALTKLSNCYGPLIYFYIGSKPCVLVSSQELAKEVFKNHETTFLNRPKMANLDY LTYGTADMAMAPYGPLWKFMKKLCMSELLGTRTLDQLLPVRREEMKRFVKTIQEKAEA GEAVDIGVELMRLTNNIISRMLLSKRCSDKEDEANEVQTLVKEMNNLGTKFNLSDLLW FCKNLDLQGFRKRLKDVRDRYDILMEKIILEHKEARNKNGAGGDRIKDVLDILIDISE DENAEMKLTRENIKAFVMNFFGAGTDTSSITIGWGVSELINHPSVMEKARKEIDTVVG RNRILEESDVEYLPYLQAIVKETLRLHPGGPLVVRESTEDCIIGSYEIPEGTRLFVNV WALGRDPKQWESPLEFVPERFLSEEWRQGKNQFLDVRGQHFSLLPFGSGRRSCPGASL ALQVVPTVLGIIIQCFDWKVDGENDTINMEEKAGMTLLRAHPLVCYPVARLSPFPSI" gene 29101281..29103326 /locus_tag="TCM_024851" /note="dbxref CacaoGD:Thecc1EG024851" mRNA join(29101281..29101827,29102180..29103326) /locus_tag="TCM_024851" /product="Cytochrome P450, family 93, subfamily D, polypeptide 1, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024850t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s05710.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.13 coverage" CDS join(29101384..29101827,29102180..29102821) /locus_tag="TCM_024851" /note="paralog of Thecc1EG024850t1" /codon_start=1 /product="Cytochrome P450, family 93, subfamily D, polypeptide 1, putative" /protein_id="EOY09433.1" /db_xref="Phytozome:POPTR_0006s05710.1" /db_xref="TAIR:AT5G06900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N6W5" /translation="MKRFVKIIQEKAEAGEVVDIGVELMRLTNNIISRMLLSKRCSDK ENEANEVQTLVKEMNSLGPKFNLSDSLWFCKNLDLQGYRKRLKDVRDKYDILMEKIIL EHKEARKKNGARGDKIKDVLDILIDISEDENAEMKLTRENIKAFVMNFFGAGIDTSAV TIGWGLAELINHPSVMEKEQKETDSVVRKNRILEESDIENVPYLQAIVKETLRLHPAG PLVVRESKEDCIIGDYQIPEGTRLFVNLWALSKDPKQWERPLEFVPERFLCEPWRQGK NQFLDVRGQHFSLLPFGSGRRSCLRASLALQVIPTVFGIIIQCFDWKVDGVNDTVNME EKAGLTLVRAHPLVCHPVARPSPFPSI" gene 29104501..29107183 /locus_tag="TCM_024852" /note="dbxref CacaoGD:Thecc1EG024852" mRNA join(29104501..29105437,29106086..29107183) /locus_tag="TCM_024852" /product="Cytochrome P450 93A3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s05030.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024850t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05030.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc7405t1" CDS join(29104535..29105437,29106086..29106721) /locus_tag="TCM_024852" /note="paralog of Thecc1EG024850t1" /codon_start=1 /product="Cytochrome P450 93A3" /protein_id="EOY09434.1" /db_xref="Phytozome:POPTR_0016s05030.1" /db_xref="TAIR:AT5G06900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N6W5" /translation="MADFQPYIILFLIWLVSLILVRRIFTKSRTTSRLPPSPMAIPII GHLHLLSPIPHQALHKLSTKNGPLMHVLLGSVPCVVASTPEMAKEFLKTHESSFSNRP KTAAVDYLTYGSTDFSFAPYGPYWKFMKKICMSELLSGRMLDQFLPVRREELRQFLQF LMKKVNASEKVDVGGELVRLTNNIVSRMTMNQTCSNDEDEAEEVRKLVQAIAELSGQF NLSDFIWFCKNLDLQGMNKKLKEVRDKFDAMMDKIIREHEEARKRKEDGGDAVKDLLD ILLDISEDESSEMRLTRENIKAFILDIFAAGTDTSAVTTEWALAELINHPNIMEKARA EIDIVVGRNRIVEESDTTNLPYLQAIVKETLRLHPTGPMIVRESSEHCTVGGYDIPAK TRLFVNVWAIGRDPYHWENPLEFRPERFVSIEESGKSQLDVRGQHFHLLPFGSGRRSC PGTSLALQVVQTSLAAMIQCFDWKVNGADGTVDMKEGPGLTLPRAHPLICIPVPRLNP FPSF" mobile_element complement(29108221..29108437) /note="source:scaffold_8_CACTA_0858 14314 14558" /mobile_element_type="transposon:TIR/CACTA" mobile_element 29108438..29109250 /note="source:CACAO_Again_on_E135_scaffold_5 1 813" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(29109583..29109983) /note="source:CACAO_M_E49539_F76_scaffold_7 5943 6199" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 29110567..29111592 /note="source:INTACT579_F10_scaffold_3-int 3904 4930" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 29110885..29112635 /note="source:CACAO_M_E69938_F9_scaffold_9 4635 6360" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 29114396..29119396 /locus_tag="TCM_024853" /note="dbxref CacaoGD:Thecc1EG024853" mRNA join(29114396..29115232,29117198..29117282, 29117390..29117559,29117755..29118029,29119101..29119396) /locus_tag="TCM_024853" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene20357" /inference="similar to AA sequence:Phytozome:POPTR_0016s05020.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00940t00001" CDS join(29114857..29115232,29117198..29117282, 29117390..29117559,29117755..29118029,29119101..29119277) /locus_tag="TCM_024853" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09435.1" /db_xref="Phytozome:POPTR_0016s05020.1" /db_xref="TAIR:AT3G12150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RWA3" /translation="MVTVNLGMLHYILDHVYGAFMHRTKMSPPFFSRGWGGTKLELLE RLISQLFPEVEGQNWPPNLIQPIWRTVWETKSACLREGVFRTPCDEQLLGALPPESHN ARVAFLVPKLVPPPKMACVVHLAGTGDHTFERRLRLGGPLLKENIATMVLESPFYGQR RPMLQRGAKLLCVSDLLLLGRATIEEARSLLHWLDTEARFGKMGVCGLSMGGVHAAMV GSLHPTPVATLPFLSPHSAVVAFCEGILKHGTAWEALREDLAVKEAVMTLEEVRERMR NVLSLTDVTRFPIPKNPNAVIFVAATDDGYIPKHSVLELQKAWPGSEVRWVTGGHVSS FLLHNGEFRKAIVDGLDRLEWKESLL" gene complement(29119525..29121016) /locus_tag="TCM_024854" /note="dbxref CacaoGD:Thecc1EG024854" mRNA complement(29119525..29121016) /locus_tag="TCM_024854" /product="Polygalacturonase inhibitor" /inference="alignment:exonerate- protein:2:TAIR:AT5G06860.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024855t1" /inference="similar to AA sequence:frave:gene00522" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.29 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14134t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14135t1" CDS complement(29120005..29120994) /locus_tag="TCM_024854" /note="dbxref frave:gene00522; paralog of Thecc1EG024855t1" /codon_start=1 /product="Polygalacturonase inhibitor" /protein_id="EOY09436.1" /db_xref="TAIR:AT5G06860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q05091" /translation="MNVLPFFLCFLLFSTFCSPSLSEHCNSHDKKVLLQIKRALNNPY LLASWDPKTDCCDWYCLECDPTTHRVVSLTMFSDDRLTGQIPYEVGDLPYLETLLFRH LPNLNGTIQPSIAKLKNLKTLRLSWTNLSGAVPDFLSQLKNLTYLDLSFNNLSGTIPS SLSSLPNLEALHLDRNKFTGSIPESLGMFQGKAPDLFLSHNKLTGTIPVSLGNMDFNT IDLSRNMLEGDASMLFGSKKTTREIDLSRNMFQFDLSKVEFPKSLARLDLNHNKIMGN IPPGLTGVDLQFMNVSYNRLCGQIPVGGRLQSFDYYTYFHNRCLCGAPLESCK" mobile_element complement(29121319..29121368) /note="source:CACAO_M_S_E109853_F60_scaffold_9 7825 7877" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(29121889..29123470) /locus_tag="TCM_024855" /note="dbxref CacaoGD:Thecc1EG024855" mRNA complement(29121889..29123470) /locus_tag="TCM_024855" /product="Polygalacturonase inhibitor" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s05750.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024854t1" /inference="similar to AA sequence:frave:gene00522" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.27 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc678t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2919t1" CDS complement(29122456..29123448) /locus_tag="TCM_024855" /note="dbxref frave:gene00522; paralog of Thecc1EG024854t1" /codon_start=1 /product="Polygalacturonase inhibitor" /protein_id="EOY09437.1" /db_xref="TAIR:AT5G06860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q05091" /translation="MKIIPFFLCFLFFSTLLSLSLSELCNPYDKKVLLKIKQSLNNPY LLASWNPQTDCCNWYCVECDLKTNRITSLTMFSDKELSGQIPAEVGDLPFLETLEFRK LPNLTGPIQPSIAKLKNLKFLRLSWTNLSGSVPDFLSQLKNLTFLDLSFNNLSGSIPS SLSWLPNLGALHLDRNKLIGPIPYSFGMFHGNVPSLYLSHNGLSGKIPASLGNMDFTA IDLSRNMLEGDASMLFGLNKTTWEVDLSRNRLQFDLSKVEFPKSLARLDLNHNEIRGS IPVGLTAADDLQFLNLSYNRLCGKIPVGGKLQSFDYSAYFHNRCLCGAPLQSCK" mobile_element 29123964..29124401 /note="source:CACAO_M_E24109_F106_scaffold_4 1 438" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(29124401..29128033) /note="source:CACAO_M_S_E32578_F60_scaffold_4 5040 8662" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 29127404..29131155 /note="source:INTACT8_F106_scaffold_3-int 3920 7705" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 29130133..29131282 /note="source:CACAO_M_S_E99770_F60_scaffold_9 147 1301" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 29135833..29139184 /locus_tag="TCM_024857" /note="dbxref CacaoGD:Thecc1EG024857" mRNA join(29135833..29136228,29136347..29139184) /locus_tag="TCM_024857" /product="C2 calcium/lipid-binding plant phosphoribosyltransferase family protein" /inference="alignment:exonerate- protein:2:ricco:29216.m000250" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005933t1" /inference="similar to AA sequence:ricco:29216.m000250" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc226t1" CDS 29136634..29139024 /locus_tag="TCM_024857" /note="dbxref ricco:29216.m000250; paralog of Thecc1EG005933t1" /codon_start=1 /product="C2 calcium/lipid-binding plant phosphoribosyltransferase family protein" /protein_id="EOY09438.1" /db_xref="TAIR:AT5G06850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HB98" /translation="MNPAAAANQKEEFKLKDTKPQLGERWPHGGMRGGGGWISSERAT STYDLVEQMFYLYVRVVKAKDLPTNPVTGNIDPYVEVKLGNYKGKTQHFEKKTNPEWN QVFAFSKEKLQSSILEVFVRDREMVGRDDYVGKVIFDMNEVPTRVPPDSPLAPQWYRL EHRRGDSKVKGEVMLAVWMGTQADEAFPEAWHTDAASVQGEGVFNIRSKVYVSPKLWY LRVNVIEAQDVEPHDRSQLPQAFVKAQVGNQILKTKLCPQKTINPMWNEDLIFVAAEP FEEQLYLTVENKVTSAKDEVMGRLILPLHDFERRLDHRPVHSKWCNLEKFGFGALEGD KRHELKFSSRVHLRVCLEGAYHVLDESTMYISDQRPTARQLWKNPIGILEVGILSAQG LQPMKTKDGRGTTDAYCVAKYGQKWVRTRTIMESFNPKWNEQYTWEVYDPCTVITLGV FDNCHLGGSEKPASGSGGKNDSRIGKVRIRLSTLETDRIYTNSYPLLVLQTSGLKKMG ELQLAVRFTCLSLANMIYLYWHPLLPKMHYLHPFTVNQLDSLRYQAMNIVAVRLGRAE PPLRKEVVEYMLDVDSHMWSMRRSKANFFRIVSLFSGVLAMSKWLGDVCHWKNPVTSI LVHVLFFILICYPELILPTIFLYMFLIGIWNYRFRPRHPPHMDTKLSWAEVVHPDELD EEFDTFPTSKAQDVVRMRYDRLRSVAGRIQTVVGDMATQGERFLALLSWRDPRATSLF VIFCLIAAVALYVTPFKIMALVAGLFWLRHPRFRSKLPSVPSNFFRRLPSRADSML" gene complement(29139240..29141144) /locus_tag="TCM_024858" /note="dbxref CacaoGD:Thecc1EG024858" mRNA complement(join(29139240..29139678,29139788..29139969, 29140605..29140711,29140815..29141144)) /locus_tag="TCM_024858" /product="60S ribosomal protein L6-1" /inference="alignment:exonerate- protein:2:ricco:30152.m002411" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024859t1" /inference="similar to AA sequence:frave:gene00518" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14300t1" CDS complement(join(29139523..29139678,29139788..29139969, 29140605..29140711,29140815..29141071)) /locus_tag="TCM_024858" /note="dbxref frave:gene00518; paralog of Thecc1EG024859t1" /codon_start=1 /product="60S ribosomal protein L6-1" /protein_id="EOY09439.1" /db_xref="TAIR:AT1G74050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GFS1" /translation="MAPKRKTPVKCRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGV FPRHDPKPKAPAAAEKLPKFYPADDVKKPLLNKRKPKPTKLRASITPGTVLILLAGRF MGKRVVFLKQLTSGLLLVTGPFKINGVPLRRVNQSYVIATSTKVDISGLNVEKFDDKY FAKEVEKKKKKGEGEFFEAEKEDKKKLPDDKKEDQKSVDAALVKSIEGVPALKAYLAA RFSLKSGMKPHELVF" gene complement(29143207..29161495) /locus_tag="TCM_024859" /note="dbxref CacaoGD:Thecc1EG024859" mRNA complement(join(29143207..29143909,29144018..29144199, 29144865..29144971,29145086..29145553,29161037..29161495)) /locus_tag="TCM_024859" /product="Ribosomal protein L6 family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033532001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024858t1" /inference="similar to AA sequence:frave:gene00518" /note="quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Newbler:10:TSA:cgbaL_g04597t00001" CDS complement(join(29143754..29143909,29144018..29144199, 29144865..29144971,29145086..29145553,29161037..29161194)) /locus_tag="TCM_024859" /note="dbxref frave:gene00518; paralog of Thecc1EG024858t1" /codon_start=1 /product="Ribosomal protein L6 family protein, putative" /protein_id="EOY09440.1" /db_xref="TAIR:AT1G74050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GFS1" /translation="MIPQLKAFDFIEALTKYEQEHKPNPKASGHTQIPSYRFIIGLDH YLNFTNKYIPKDLDYGQDSGEFNVGRKWTQNIAKFIARSRKGPEEKTKPSFCSIKSLG FCVIIFPTSKPHRAPAGIRQEMAPKRKTPVKTRNPDLIRGVGKYSRSKMYHKRGLWAI KAKNGGVFPRHDPKPKAPAAAEKLPKFYPADDVKKPLFNKRKPKPTKLRASITPGTVL ILLAGRFMGKRVVFLKQLTSGLLLVTGPFKINGVPLRRVNQSYVIATSTKVDISGVNV EKFDDKYFAKEAEKKKKKGEGEFFEAEKEDKKKLPDDKKEDQKAVDASLIKAIECVPD LKPYLAARFSLKSGMKPHELVF" mobile_element complement(29147946..29147975) /note="source:INTACT190_F166_scaffold_7-int 6522 6711" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(29147976..29148133) /note="source:CACAO_M_E43483_F73_scaffold_5 2535 2692" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 29148236..29148767 /note="source:scaffold_8_CACTA_0857 464 1016" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29148558..29149007) /note="source:scaffold_6_CACTA_0700 7154 7613" /mobile_element_type="transposon:TIR/CACTA" mobile_element 29148866..29149368 /note="source:scaffold_5_CACTA_0611 22 517" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29149636..29151782) /note="source:CACAO_M_S_E17011_F73_scaffold_3 1 2159" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 29154352..29154742 /note="source:scaffold_5_CACTA_0611 27 417" /mobile_element_type="transposon:TIR/CACTA" mobile_element 29154843..29170390 /note="source:scaffold_5_CACTA_0611 418 15965" /mobile_element_type="transposon:TIR/CACTA" gene 29169440..29169833 /locus_tag="TCM_024861" /note="dbxref CacaoGD:Thecc1EG024861" mRNA join(29169440..29169693,29169745..29169833) /locus_tag="TCM_024861" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028516t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc9Loc4410t1" CDS 29169441..29169659 /locus_tag="TCM_024861" /note="paralog of Thecc1EG028516t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09441.1" /translation="MPSNVTSPAIALEEKVENLSENLGKIRDELHGEIHEEIKNAMAK NMSEFMARMESMIMTNALSQQGNAGPSS" gene complement(29171198..29184899) /locus_tag="TCM_024862" /note="dbxref CacaoGD:Thecc1EG024862" mRNA complement(join(29171198..29171795,29173956..29174195, 29175045..29175316,29175409..29175481,29175569..29175646, 29175784..29175843,29175966..29176034,29176188..29176316, 29176409..29176488,29177160..29177257,29177444..29178077, 29184823..29184899)) /locus_tag="TCM_024862" /product="BZIP transcription factor family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033531001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041421t2" /inference="similar to AA sequence:Phytozome:GSVIVT01033531001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6577t4" CDS complement(join(29171643..29171795,29173956..29174195, 29175045..29175316,29175409..29175481,29175569..29175646, 29175784..29175843,29175966..29176034,29176188..29176316, 29176409..29176488,29177160..29177257,29177444..29177640)) /locus_tag="TCM_024862" /note="paralog of Thecc1EG041421t2" /codon_start=1 /product="BZIP transcription factor family protein" /protein_id="EOY09442.1" /db_xref="Phytozome:GSVIVT01033531001" /db_xref="TAIR:AT5G06839.3" /db_xref="UniProtKB/TrEMBL:UniRef50_E3VNM4" /translation="MATSRGNMNNSIQLDHHQHNQHHHHQNQQQQQQQQHQHQIQEHH QNQIPYAMMQSSSSSSIPGNFISKDTGAYDLGELDQALFLYLDGQDPSTIQEQRHNSG MRPPTLNIFPSQPMHVEPPLSTKTSRGLVSPATSGSKRPSEPSMELANARNDASGSAP DQPAKAVKREGNRKGPTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLE SSRIRLTQLEQELQRARAQGMFFGGGVLGGEQGLPVGINNISSDAAVFDIEYARWLEE HHRLMCELRAAVQEHLPENELRIFVDNCLAHFDELMNLKSMVAKTDVFHLVSGMWKTP AERCFTWMGGFRPSELIKVILNQIEPLTEQQIMGICALQQSTQEAEEALSQGLEALNQ SLSDIITSDSLSCPPNMTNYMGQMAIAMNKLATLEGFVRQADNLRHQTIHRLHQILTT RQAARCFLAIAEYFHRLRALSSLWLARPRQEQ" mobile_element complement(29182107..29182154) /note="source:scaffold_2_CACTA_0276 10844 10891" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29187660..29190495) /note="source:scaffold_4_CACTA_0497 8736 11167" /mobile_element_type="transposon:TIR/CACTA" mobile_element 29191037..29192447 /note="source:scaffold_9_CACTA_0937 2271 3675" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29201291..29203295) /note="source:scaffold_5_CACTA_0615 183 2017" /mobile_element_type="transposon:TIR/CACTA" mobile_element 29203475..29203823 /note="source:scaffold_10_CACTA_0137 3891 4210" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29203930..29204362) /note="source:scaffold_5_CACTA_0615 1617 2054" /mobile_element_type="transposon:TIR/CACTA" mobile_element 29207957..29208015 /note="source:scaffold_5_CACTA_0580 7247 7310" /mobile_element_type="transposon:TIR/CACTA" mobile_element 29208275..29208338 /note="source:CACAO_M_S_E259836_F369_scaffold_19 1200 1267" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 29208339..29208351 /note="source:CACAO_M_E49559_F88_scaffold_7 7686 7760" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(29208855..29214074) /locus_tag="TCM_024864" /note="dbxref CacaoGD:Thecc1EG024864" mRNA complement(join(29208855..29212645,29213704..29214017)) /locus_tag="TCM_024864" /product="Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s04960.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040498t4" /inference="similar to AA sequence:Phytozome:POPTR_0016s04960.4" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:PASA:2:TSA:puevd3b024050t1a2; alternateUTRof:Thecc1EG024864t2; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc465t3" mRNA complement(join(29208855..29209955,29210111..29210204, 29210284..29212645,29213022..29213089,29213704..29213709)) /locus_tag="TCM_024864" /product="Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s04960.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040498t4" /inference="similar to AA sequence:Phytozome:POPTR_0016s04960.4" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc465t3" mRNA complement(join(29208855..29212645,29213022..29213666)) /locus_tag="TCM_024864" /product="Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s04960.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040498t4" /inference="similar to AA sequence:Phytozome:POPTR_0016s04960.4" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:PASA:2:TSA:puevd3b024050t1a3; alternateUTRof:Thecc1EG024864t2; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc465t3" CDS complement(join(29209740..29209955,29210111..29210204, 29210284..29212607)) /locus_tag="TCM_024864" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG040498t4" /codon_start=1 /product="Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein isoform 1" /protein_id="EOY09443.1" /db_xref="Phytozome:POPTR_0016s04960.4" /db_xref="TAIR:AT3G57880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HUD2" /translation="MMHRPPPPDDFALKETNPHLGGGKVSGDKLTSTYDLVEQMQYLY VRVVKAKDLPGKDVTGSCDPYVEVKLGNYLGKTRVFEKKTNPEWNQVFAFSKDRLQAS VLEVTVKDKDVVKDDFIGKVFFDLNEVPKRVPPDSPLAPQWYRLEDRQGNKAKGELML AVWMGTQADEAFPEAWHSDAAVVSGADGLANIRSKVYLSPKLWYLRVNVIEAQDLLPG DKGRYPEVFVRAILGNQALRTRVSVARGINPMWNEDLMFVAAEPFEEPLILSVEDRVA PNKDEVLGKCAIPLQYVDRRLDHKPVNSRWFNLEKHVIVEGEKKKETKFSSRIHMRIC LEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAY CVAKYGQKWVRTRTIIDSFAPKWNEQYTWEVFDPCTVITIGVFDNWHLHGGDKASGAK DSKIGKVRIRLSTLETDRVYTHSYPLLVLHSNGVKKMGEIHLAVRFTCSSLLNMMHMY SHPLLPKMHYLHPLTVSQLDSLRHQATQIVSMRLGRAEPPLRKEVVEYMLDVGSHMWS MRRSKANFFRIMNVLSGLIAVGKWFDQICNWKNPITTVLIHILFIILVLYPELILPTI FLYLFLIGVWYYRWRPRHPPHMDTRLSHADSSHPDELDEEFDTFPTSRPSDVVRMRYD RLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFCLVAAIVLYVTPFQVVA LLTGFYILRHPRFRHKLPSVPLNFFRRLPARTDSIQEDAETNGACFFCMFSGGMLGSG MMCNLHLKILKMMGPCNAKPSASFMTCCSFCPVVIRAYHVGVKRVNIKSWLMYVCECR WEYGTAQAFFTRLTPLLIHNR" mRNA complement(join(29209934..29212645,29213022..29213089, 29213704..29214074)) /locus_tag="TCM_024864" /product="Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s04960.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040498t4" /inference="similar to AA sequence:Phytozome:POPTR_0016s04960.4" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc465t3; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc465t3" CDS complement(29210277..29212607) /locus_tag="TCM_024864" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG040498t4" /codon_start=1 /product="Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein isoform 2" /protein_id="EOY09444.1" /db_xref="Phytozome:POPTR_0016s04960.4" /db_xref="TAIR:AT3G57880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HUD2" /translation="MMHRPPPPDDFALKETNPHLGGGKVSGDKLTSTYDLVEQMQYLY VRVVKAKDLPGKDVTGSCDPYVEVKLGNYLGKTRVFEKKTNPEWNQVFAFSKDRLQAS VLEVTVKDKDVVKDDFIGKVFFDLNEVPKRVPPDSPLAPQWYRLEDRQGNKAKGELML AVWMGTQADEAFPEAWHSDAAVVSGADGLANIRSKVYLSPKLWYLRVNVIEAQDLLPG DKGRYPEVFVRAILGNQALRTRVSVARGINPMWNEDLMFVAAEPFEEPLILSVEDRVA PNKDEVLGKCAIPLQYVDRRLDHKPVNSRWFNLEKHVIVEGEKKKETKFSSRIHMRIC LEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAY CVAKYGQKWVRTRTIIDSFAPKWNEQYTWEVFDPCTVITIGVFDNWHLHGGDKASGAK DSKIGKVRIRLSTLETDRVYTHSYPLLVLHSNGVKKMGEIHLAVRFTCSSLLNMMHMY SHPLLPKMHYLHPLTVSQLDSLRHQATQIVSMRLGRAEPPLRKEVVEYMLDVGSHMWS MRRSKANFFRIMNVLSGLIAVGKWFDQICNWKNPITTVLIHILFIILVLYPELILPTI FLYLFLIGVWYYRWRPRHPPHMDTRLSHADSSHPDELDEEFDTFPTSRPSDVVRMRYD RLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFCLVAAIVLYVTPFQVVA LLTGFYILRHPRFRHKLPSVPLNFFRRLPARTDSML" CDS complement(29210277..29212607) /locus_tag="TCM_024864" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG040498t4" /codon_start=1 /product="Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein isoform 2" /protein_id="EOY09445.1" /db_xref="Phytozome:POPTR_0016s04960.4" /db_xref="TAIR:AT3G57880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HUD2" /translation="MMHRPPPPDDFALKETNPHLGGGKVSGDKLTSTYDLVEQMQYLY VRVVKAKDLPGKDVTGSCDPYVEVKLGNYLGKTRVFEKKTNPEWNQVFAFSKDRLQAS VLEVTVKDKDVVKDDFIGKVFFDLNEVPKRVPPDSPLAPQWYRLEDRQGNKAKGELML AVWMGTQADEAFPEAWHSDAAVVSGADGLANIRSKVYLSPKLWYLRVNVIEAQDLLPG DKGRYPEVFVRAILGNQALRTRVSVARGINPMWNEDLMFVAAEPFEEPLILSVEDRVA PNKDEVLGKCAIPLQYVDRRLDHKPVNSRWFNLEKHVIVEGEKKKETKFSSRIHMRIC LEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAY CVAKYGQKWVRTRTIIDSFAPKWNEQYTWEVFDPCTVITIGVFDNWHLHGGDKASGAK DSKIGKVRIRLSTLETDRVYTHSYPLLVLHSNGVKKMGEIHLAVRFTCSSLLNMMHMY SHPLLPKMHYLHPLTVSQLDSLRHQATQIVSMRLGRAEPPLRKEVVEYMLDVGSHMWS MRRSKANFFRIMNVLSGLIAVGKWFDQICNWKNPITTVLIHILFIILVLYPELILPTI FLYLFLIGVWYYRWRPRHPPHMDTRLSHADSSHPDELDEEFDTFPTSRPSDVVRMRYD RLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFCLVAAIVLYVTPFQVVA LLTGFYILRHPRFRHKLPSVPLNFFRRLPARTDSML" CDS complement(29210277..29212607) /locus_tag="TCM_024864" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG040498t4" /codon_start=1 /product="Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein isoform 2" /protein_id="EOY09446.1" /db_xref="Phytozome:POPTR_0016s04960.4" /db_xref="TAIR:AT3G57880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HUD2" /translation="MMHRPPPPDDFALKETNPHLGGGKVSGDKLTSTYDLVEQMQYLY VRVVKAKDLPGKDVTGSCDPYVEVKLGNYLGKTRVFEKKTNPEWNQVFAFSKDRLQAS VLEVTVKDKDVVKDDFIGKVFFDLNEVPKRVPPDSPLAPQWYRLEDRQGNKAKGELML AVWMGTQADEAFPEAWHSDAAVVSGADGLANIRSKVYLSPKLWYLRVNVIEAQDLLPG DKGRYPEVFVRAILGNQALRTRVSVARGINPMWNEDLMFVAAEPFEEPLILSVEDRVA PNKDEVLGKCAIPLQYVDRRLDHKPVNSRWFNLEKHVIVEGEKKKETKFSSRIHMRIC LEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAY CVAKYGQKWVRTRTIIDSFAPKWNEQYTWEVFDPCTVITIGVFDNWHLHGGDKASGAK DSKIGKVRIRLSTLETDRVYTHSYPLLVLHSNGVKKMGEIHLAVRFTCSSLLNMMHMY SHPLLPKMHYLHPLTVSQLDSLRHQATQIVSMRLGRAEPPLRKEVVEYMLDVGSHMWS MRRSKANFFRIMNVLSGLIAVGKWFDQICNWKNPITTVLIHILFIILVLYPELILPTI FLYLFLIGVWYYRWRPRHPPHMDTRLSHADSSHPDELDEEFDTFPTSRPSDVVRMRYD RLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFCLVAAIVLYVTPFQVVA LLTGFYILRHPRFRHKLPSVPLNFFRRLPARTDSML" gene 29213934..29216060 /locus_tag="TCM_024865" /note="dbxref CacaoGD:Thecc1EG024865" mRNA join(29213934..29214372,29215610..29216060) /locus_tag="TCM_024865" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.17 coverage" CDS join(29214223..29214372,29215610..29215879) /locus_tag="TCM_024865" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09447.1" /translation="MSFRRFSLLLFYPIGFLVSIGILRGFHRLCSPFGMFVLVGPDFS GRCLNYKGMKPPRPYKDKTKGRLLLSGVAFTGMGYSLRVLLGTTSELASIAAAGAYEE ALPFRSVSRIIWIRFITGLGAYAVLHHAYTGILGFRL" gene 29214277..29229790 /locus_tag="TCM_024866" /note="dbxref CacaoGD:Thecc1EG024866" mRNA join(29214277..29214372,29219086..29219766, 29221708..29221848,29222837..29223217,29224551..29224655, 29225755..29225895,29227930..29228133,29228253..29228345, 29228512..29228623,29229301..29229790) /locus_tag="TCM_024866" /product="Tubulin binding cofactor C domain-containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s04950.1" /inference="similar to AA sequence:ricco:29269.m000241" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc711t3" mobile_element 29215007..29215114 /note="source:scaffold_1_CACTA_0005 6252 6354" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29217904..29218517) /note="source:scaffold_2_CACTA_0244 12897 13471" /mobile_element_type="transposon:TIR/CACTA" mobile_element 29217988..29218622 /note="source:CACAO_M_E4753_F17_scaffold_2 7208 7811" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA join(29219123..29219766,29221708..29221848, 29222837..29223217,29224551..29224655,29225755..29225895, 29227930..29228133,29228253..29228345,29228512..29228623, 29229301..29229376,29229461..29229704) /locus_tag="TCM_024866" /product="Tubulin binding cofactor C domain-containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s04950.1" /inference="similar to AA sequence:ricco:29269.m000241" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc711t3; alternateUTRof:Thecc1EG024866t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc711t3" CDS join(29219284..29219766,29221708..29221848, 29222837..29223217,29224551..29224655,29225755..29225895, 29227930..29228133,29228253..29228345,29228512..29228623, 29229301..29229344) /locus_tag="TCM_024866" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29269.m000241" /codon_start=1 /product="Tubulin binding cofactor C domain-containing protein isoform 1" /protein_id="EOY09448.1" /db_xref="TAIR:AT3G57890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q940S9" /translation="MTDPIEPSTSTSDPIPSRSPTTLLHPRREPFEHGLLPIQKLIFT DPVQALTPLKQKHASSSTHRVDSVALADALQISADHARLVLDTLASVLHSESDQLVTA RSDDVDSVGADLRDLILFLYIQSYKRLLPRSHKDSAAVADVWPSTSAFDGYLSALSPL QLVRSNSRRFMPSQADEEAHQLSYLQKHLANILSLLSEPVEGEGEESLVLTMEGFEHL GFLIQFGDKGSEGVPLSQAAPFFANSDPDMPAVPVPAAQVHDWLLQNIASSLEHVTEK ISAKENGPPSGCDQDVAMADASPSSVKASPSARGPCFIEGVSKSSYVKQASDLKNSSV KVINCHDSVIYILAPLRYATIYGCSDATIVLGAVGKAVRVEHCERVHVIITAKRVCIA NCRECVFFLGVNQRPLIVGDNHKLQVAPYNTFYSQLEEHMTEVGIESTVNRWDAPLAL GVIDPHDSLSHPAGVSDAQAESATRLDPDQFTNFLIPNWFEGESTGSTKDNPFPLPDT YLTSQQRNQKNLGEIKQILREAPLEENRKRELSCALHVYFKDWLYASGNIRQLYCLQG D" CDS join(29219284..29219766,29221708..29221848, 29222837..29223217,29224551..29224655,29225755..29225895, 29227930..29228133,29228253..29228345,29228512..29228623, 29229301..29229344) /locus_tag="TCM_024866" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29269.m000241" /codon_start=1 /product="Tubulin binding cofactor C domain-containing protein isoform 1" /protein_id="EOY09449.1" /db_xref="TAIR:AT3G57890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q940S9" /translation="MTDPIEPSTSTSDPIPSRSPTTLLHPRREPFEHGLLPIQKLIFT DPVQALTPLKQKHASSSTHRVDSVALADALQISADHARLVLDTLASVLHSESDQLVTA RSDDVDSVGADLRDLILFLYIQSYKRLLPRSHKDSAAVADVWPSTSAFDGYLSALSPL QLVRSNSRRFMPSQADEEAHQLSYLQKHLANILSLLSEPVEGEGEESLVLTMEGFEHL GFLIQFGDKGSEGVPLSQAAPFFANSDPDMPAVPVPAAQVHDWLLQNIASSLEHVTEK ISAKENGPPSGCDQDVAMADASPSSVKASPSARGPCFIEGVSKSSYVKQASDLKNSSV KVINCHDSVIYILAPLRYATIYGCSDATIVLGAVGKAVRVEHCERVHVIITAKRVCIA NCRECVFFLGVNQRPLIVGDNHKLQVAPYNTFYSQLEEHMTEVGIESTVNRWDAPLAL GVIDPHDSLSHPAGVSDAQAESATRLDPDQFTNFLIPNWFEGESTGSTKDNPFPLPDT YLTSQQRNQKNLGEIKQILREAPLEENRKRELSCALHVYFKDWLYASGNIRQLYCLQG D" gene complement(29229972..29232915) /locus_tag="TCM_024867" /note="dbxref CacaoGD:Thecc1EG024867" mRNA complement(join(29229972..29230564,29230650..29230754, 29230839..29230924,29231598..29231749,29231767..29231772, 29231832..29232150,29232698..29232915)) /locus_tag="TCM_024867" /product="Rhodanese/Cell cycle control phosphatase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033526001" /inference="similar to AA sequence:Phytozome:GSVIVT01033526001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc519t3" CDS complement(join(29230494..29230564,29230650..29230754, 29230839..29230924,29231598..29231749,29231767..29231772, 29231832..29232150,29232698..29232744)) /locus_tag="TCM_024867" /codon_start=1 /product="Rhodanese/Cell cycle control phosphatase superfamily protein" /protein_id="EOY09450.1" /db_xref="Phytozome:GSVIVT01033526001" /db_xref="TAIR:AT2G42220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O48529" /translation="MAGIAGACYSTLSCTSNSRRSWLELKTYHGRAISGIPARRRNLS IRAEVNFVNAEEAKKLIADEGYAVLDVRDKSQFDRAHIKSCYHVPLFIENQDNDPGQS FLSSFLLLNSAHFFSCLSPSFLGTIIKRTLHNNFSGLFFGLPFTKPNPHFVQSVKSQF SPDSKLLLVCQEGLRSAAAANKLEQAGFQKIACMTSGLQTAKPGTFDSVGSKELQDAG KAGLVTIQGKISAVLGTVLICAFLFITLFPDQAEKLLQMFPAS" gene 29234414..29235095 /locus_tag="TCM_024868" /note="dbxref CacaoGD:Thecc1EG024868" mRNA 29234414..29235095 /locus_tag="TCM_024868" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s05820.1" /note="quality class is medium-utrpoor, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2098t2_C1" CDS 29234786..29234998 /locus_tag="TCM_024868" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09451.1" /translation="MSNKWNWFHLPCLDLGNTTCNFVYLNSCCSSFWLTYLEVVMERK GTRLLVQALFHPARNMYYAAAAAAAA" gene complement(29235484..29237935) /locus_tag="TCM_024869" /note="dbxref CacaoGD:Thecc1EG024869" mRNA complement(join(29235484..29235787,29236691..29237034, 29237864..29237935)) /locus_tag="TCM_024869" /product="Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein" /inference="alignment:exonerate-protein:2:frave:gene22664" /inference="similar to AA sequence:frave:gene22664" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g09374t00001" CDS complement(join(29235639..29235787,29236691..29237021)) /locus_tag="TCM_024869" /note="dbxref frave:gene22664" /codon_start=1 /product="Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein" /protein_id="EOY09452.1" /db_xref="TAIR:AT2G42210.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N6X7" /translation="MDPSDLRYYEDDDLPMLKTIKGATTGLVAGTIWGTIVATWYDVP RVERSVALPGLVRTLKMMGNHGITFAAIGGVYIGVEQLLQNYRMKRDFVNGAVGGFVA GASILGFKGRSISTAIAAGTALAVTSAVIDAGGQTTRIDTGKEYYPYTTKKRPTADS" gene 29238864..29245148 /locus_tag="TCM_024870" /note="dbxref CacaoGD:Thecc1EG024870" mRNA join(29238864..29239179,29239303..29239437, 29240838..29240932,29241087..29241181,29241294..29241429, 29241527..29241676,29241805..29242371,29242683..29242891, 29243691..29243823,29244292..29245148) /locus_tag="TCM_024870" /product="CDK5RAP3-like protein" /inference="alignment:exonerate- protein:2:ricco:29269.m000247" /inference="similar to AA sequence:ricco:29269.m000247" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaL_g09822t00001" CDS join(29239119..29239179,29239303..29239437, 29240838..29240932,29241087..29241181,29241294..29241429, 29241527..29241676,29241805..29242371,29242683..29242891, 29243691..29243823,29244292..29244423) /locus_tag="TCM_024870" /note="dbxref ricco:29269.m000247" /codon_start=1 /product="CDK5RAP3-like protein" /protein_id="EOY09453.1" /db_xref="TAIR:AT5G06830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FG23" /translation="MQTPEDIRNLPIDITFSRLGEWLVDRKRVPSDWRKRLAAIRSKI SKEFTALPKDIDPYFQTLDPEGIGYLEAKKIYDILLKSTPESRNIFGRLSGAAGSWEA IVHSFEKDHLFLGEAAQIIIQNVNYEIPYQKKQVQKIQQQLAELERKEADIKRSAALS AAKYAEACQELGLQGKNVRLELLETANSLPSTFGRILEVIDGDSVSRAIEYYSNFVRD AHTEKNKSSFAVLLNLKDIRENPPSLNVSAASEILDLENTQLRSNEINHVRGDIDVNA DTIDWDISVDSAQIDWDIGTLEATDDSGNGLGPYEIVNASEILQNSAPNEAAESDKTP LHKTEDNPLPEISVSDISWDISVETPQVDVIHDVSLPNIQLENQTYAPDTLPDTPGIR EERSQLLETEYRNKILDDLYEMKAFLNQRLVELRNEDTLSLQNQVQAVAPLVLQQYTP DAIETMISDVSLAVSLLTNRKTRDLIMILNSKRFLDRIVSTLEEKKHHEVKLKEGLKD VAAKRMELQNSLSSSWPKQEAALAKTRELKKLCESTLSSVFDGRPVNIIGEINALLSS GISA" gene complement(29245129..29251163) /locus_tag="TCM_024871" /note="dbxref CacaoGD:Thecc1EG024871" mRNA complement(join(29245129..29245976,29246061..29246200, 29246535..29246682,29247004..29247269,29247458..29247732, 29247840..29248168,29248251..29248316,29248419..29248484, 29248590..29248661,29249081..29249152,29249249..29249320, 29249462..29249527,29249627..29249695,29249776..29249908, 29250635..29251163)) /locus_tag="TCM_024871" /product="STRUBBELIG-receptor family 2, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s20510.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6593t1" CDS complement(join(29245385..29245976,29246061..29246200, 29246535..29246682,29247004..29247269,29247458..29247732, 29247840..29248168,29248251..29248316,29248419..29248484, 29248590..29248661,29249081..29249152,29249249..29249320, 29249462..29249527,29249627..29249695,29249776..29249908, 29250635..29250728)) /locus_tag="TCM_024871" /codon_start=1 /product="STRUBBELIG-receptor family 2, putative" /protein_id="EOY09454.1" /db_xref="TAIR:AT5G06820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HLK6" /translation="MDTELLCFYFTVIVFSAALFVESEATTDQLDVVALNGLYKALNS PPQLRGWKLYGGDPCGELWTGVACSGSAVIHLNVPLLNLSGYLSQLDNLHNLKYLDLS SNNIQGEIPYGLPLNVTHINMACNSLSKKIPHSLSFLKNLRHLNLSHNLLSGPIGDVF TSLQSLKTMDLSDNNFTGDLPKSFGSLTNLTELFLQNNNFTGSVVYLSELPLTYLNLE DNHFSGIIPMQFQSIPNLWIWGNRFDVAAIYPPWNFPLNSVPREKNISSPPTTEQSAV VDYLSPEVSEEKKKSLSPVGIACVVVGVALMALCAALFFAFHVNRSHAKRLKSLDSSN STLHSLPISTTIDCSTTAQAASPPFFSISSPSPLIPRHTPPVHPTSSEKTSRRKSFSR KRKFATTAKVFTVAELQLATNSFSEEKLLGEGSLGSVYKAEFPDGQVFAVKNINMVSL SYHEEEHFMAVIQMASQLRHPNIVRLIGYSVEHEQHLLVYEYVRNLSLDDALHNEVFK PLSWGLRVCIALGIARALDYLHSTFSPPVTHCNIKAANILLDEELMPHICDCGLAILR PFTSNAVKIKASEIAIWDSGYIAPEHGEPGSDNTKSDVYAFGVLLLELLTGRRPFDSS RPREEQSLVHWALFRLHDSESLEQMVDPSIKRTFPARSLSRFADIVSLCIQVLTRGRF LLKFNSEQTENIMKQVTLTFMCLCSTNKKWMGDLLIEVASFLSKMMKNNLLNFCGLNL KMQPEKEFRQPMSEIVESLTRLLQTMGLTKSSATDGAEVDPLERSFCSTQTCFKGSPP APHMSPNLTSGSLSHGFLFPM" gene 29251335..29254893 /locus_tag="TCM_024872" /note="dbxref CacaoGD:Thecc1EG024872" mRNA join(29251335..29251480,29252021..29252518, 29254120..29254185,29254329..29254893) /locus_tag="TCM_024872" /product="D111/G-patch domain-containing protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s04900.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s04900.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01158t00001" CDS join(29251343..29251480,29252021..29252518, 29254120..29254185,29254329..29254388) /locus_tag="TCM_024872" /codon_start=1 /product="D111/G-patch domain-containing protein" /protein_id="EOY09455.1" /db_xref="Phytozome:POPTR_0016s04900.1" /db_xref="TAIR:AT3G57910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M2Q7" /translation="MAEESSRNQSRNGNGKEEEEEDDYMGDLSQFLPPQPSNPSKLSS KKKKSKKLNWQEQRKLERERKQLEEDEKTLAKIDAPIPQSNIGFKLLKQMGYTPGSAL GKEGSGRAEPVGLNIRRSRAGIGREDPLKEKRKREEIEFERKKKKEEALMAEFGSWQK SQWRNRRVVVNYKKAKAALDQLENKEVVVPKKNEDEEEGEQDEEEEEEVTEEDLQDIL MKLRDEYQYCPFCGFQYESMEALLSDCPGTNEDDH" gene complement(29254986..29261198) /locus_tag="TCM_024873" /note="dbxref CacaoGD:Thecc1EG024873" mRNA complement(join(29254986..29256080,29256196..29256335, 29259902..29260386,29261068..29261198)) /locus_tag="TCM_024873" /product="Promoter-binding protein SPL9" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s04890.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033519001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14164t1" CDS complement(join(29255461..29256080,29256196..29256335, 29259902..29260308)) /locus_tag="TCM_024873" /codon_start=1 /product="Promoter-binding protein SPL9" /protein_id="EOY09456.1" /db_xref="Phytozome:GSVIVT01033519001" /db_xref="TAIR:AT2G42200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D6QZ29" /translation="MEMGSGSLTESGGSSTNSSTESLNGLKFGKKIYFEDAAAGAPAA AAAASAAGGGAVGTPPKSGPGSSSLSGSGRKARGGGVVQGAQPPRCQVEGCKVDLSDA KAYYSRHKVCGMHSKSPKVIVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNER RRKPPPGSLLPSRYGRLSSSIVESSRGGSFIMDFTAYPRLSGRDAWPTARSSERVPGN QNTATGRSLPHPWQNNSENPPHDLFLQGSPGGTGLSSAGIPSGECFTGVADSSCALSL LSNQPWGSRNRASSLGVNDMMNTEGSSVAQPTTPNGATVNPYSNASWGFKGNDSGSSS HELPPHLGLGQISEPVNNQFSGGLDLSQQSRRQFMELEQSRGYDTSTQHIHWSR" mobile_element 29274937..29275746 /note="source:CACAO_on_E137_scaffold_4 1 822" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(29278921..29279440) /note="source:CACAO_on_E2_scaffold_1 21 589" /mobile_element_type="transposon:TIR/hAT" mobile_element 29280941..29281184 /note="source:INTACT383F_F354_scaffold_3-int 912 1131" /mobile_element_type="retrotransposon:LTR/Unclassified" gene complement(29283863..29285546) /locus_tag="TCM_024874" /note="dbxref CacaoGD:Thecc1EG024874" mRNA complement(join(29283863..29284485,29285497..29285546)) /locus_tag="TCM_024874" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400020259" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040452t1" /inference="similar to AA sequence:ricco:29269.m000251" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14152t1" CDS complement(29284024..29284437) /locus_tag="TCM_024874" /note="dbxref ricco:29269.m000251; paralog of Thecc1EG040452t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09457.1" /db_xref="TAIR:AT3G57930.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A9P969" /translation="MRRGRGKAKKQTVVSSREDPGSGEDEKIPAYRRRGRPQKQLKDD IEEVEVEKTEEDGEDVKGSIPIKDMKNQVATENGRKRKRSVQAKENIDSVKKENGITT KSNTDDSSKPVGYRQNGSRRKNKPRRAAEAVVECK" gene complement(<29284462..29291932) /locus_tag="TCM_024876" /note="dbxref CacaoGD:Thecc1EG024876" mRNA complement(join(<29284462..29284485,29289676..29291932)) /locus_tag="TCM_024876" /product="Mitochondrial transcription termination factor family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT5G06810.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029329t1" /inference="similar to AA sequence:ricco:28582.m000319" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is medium, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc3318t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc3318t1" CDS complement(join(<29284463..29284485,29289676..29291410)) /locus_tag="TCM_024876" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28582.m000319; paralog of Thecc1EG029329t1" /codon_start=1 /product="Mitochondrial transcription termination factor family protein, putative isoform 2" /protein_id="EOY09459.1" /db_xref="TAIR:AT5G06810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9II08" /translation="MTHFQKLKKPSILKWVSSYFVENQLKPPFWQTGSFHIAQRQNPR LYRTKRSVVTENSDKTMFSDGENVARIPRATLKEAQAALLEYLHSTRSIHFTDAENMS KNSPHFLQKLLKKVESEKDVGSSMTRFLRYHPINEFEPFFESLGLKPCEYSPLLPRDL MFLSDDCLLLENYRVLCNYGIERNKIGKIYKEAIQVFQHEFGVLPLKLQAYQELGLSQ SFMAKVIVCGPHLLIGDVDMKFIKVLEILRSVGFDYAWIEEHLSEHDSYNWSMILRVL NFFSEMGGRSELHGLISQHPGLLFEGSGYRMLSLIAFLLKFGSPLDQISSTFLQFPEI QVGQFVSNFIKCFLFLHEIEMEVNEIGKIVCSYPLLLGSIMLKKTNSLLGNLNVGKRR LCKYIQENPQELSKWVMGKRVVRLPDSGEDIKSQRLRMKFLLDLGYGENPNMIKKALK VFRGRGGELQERFDSIVNAGLDKKDVSEMVRVSPQILNQSKDIIQKKINILVNELGYP LSSLVSFPSYLSYTTQRVRLRLAMYSWLKDQGKAEPDLALSTIVACSDKLFLRQYVNH HPSGPQVWQDLKETFFNCLK" gene 29286934..29289198 /locus_tag="TCM_024875" /note="dbxref CacaoGD:Thecc1EG024875" mRNA join(29286934..29286955,29287504..29289198) /locus_tag="TCM_024875" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.39 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc3259t1" mRNA complement(join(29287914..29288336,29289676..29291657)) /locus_tag="TCM_024876" /product="Mitochondrial transcription termination factor family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT5G06810.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029329t1" /inference="similar to AA sequence:ricco:28582.m000319" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc3318t1" CDS 29288063..29288365 /locus_tag="TCM_024875" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09460.1" /translation="MPLLPFPQKKAKEEKKQQPSAGSKVISRVCFNSFINVTLQYIFK EKWFIYSVSTHAGTLVSVNHLLCKAHYATDNSLASLAFAHSSLTMSIPNKRFQLIC" CDS complement(join(29288311..29288336,29289676..29291410)) /locus_tag="TCM_024876" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28582.m000319; paralog of Thecc1EG029329t1" /codon_start=1 /product="Mitochondrial transcription termination factor family protein, putative isoform 1" /protein_id="EOY09458.1" /db_xref="TAIR:AT5G06810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9II08" /translation="MTHFQKLKKPSILKWVSSYFVENQLKPPFWQTGSFHIAQRQNPR LYRTKRSVVTENSDKTMFSDGENVARIPRATLKEAQAALLEYLHSTRSIHFTDAENMS KNSPHFLQKLLKKVESEKDVGSSMTRFLRYHPINEFEPFFESLGLKPCEYSPLLPRDL MFLSDDCLLLENYRVLCNYGIERNKIGKIYKEAIQVFQHEFGVLPLKLQAYQELGLSQ SFMAKVIVCGPHLLIGDVDMKFIKVLEILRSVGFDYAWIEEHLSEHDSYNWSMILRVL NFFSEMGGRSELHGLISQHPGLLFEGSGYRMLSLIAFLLKFGSPLDQISSTFLQFPEI QVGQFVSNFIKCFLFLHEIEMEVNEIGKIVCSYPLLLGSIMLKKTNSLLGNLNVGKRR LCKYIQENPQELSKWVMGKRVVRLPDSGEDIKSQRLRMKFLLDLGYGENPNMIKKALK VFRGRGGELQERFDSIVNAGLDKKDVSEMVRVSPQILNQSKDIIQKKINILVNELGYP LSSLVSFPSYLSYTTQRVRLRLAMYSWLKDQGKAEPDLALSTIVACSDKLFLRQYVNH HPSGPQVWQDLKGIDIVREE" mobile_element complement(29292256..29292343) /note="source:CACAO_M_E58230_F143_scaffold_9 1683 1738" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(29292315..29297089) /locus_tag="TCM_024877" /note="dbxref CacaoGD:Thecc1EG024877" mRNA complement(join(29292315..29292700,29292794..29293159, 29293512..29293587,29293685..29293881,29294884..29295027, 29295236..29295356,29296882..29297089)) /locus_tag="TCM_024877" /product="RNA-binding family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033516001.2" /inference="similar to AA sequence:Phytozome:GSVIVT01033516001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g07691t00001" mRNA complement(join(29292315..29292700,29292794..29293159, 29293446..29293587,29293685..29293881,29294884..29295027, 29295236..29295356,29296882..29297089)) /locus_tag="TCM_024877" /product="RNA-binding family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033516001.2" /inference="similar to AA sequence:Phytozome:GSVIVT01033516001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:PASA:2:TSA:puevd3b024063t1a3; inference alignment:Newbler:10:TSA:cgbaP2_g07691t00001" mRNA complement(join(29292315..29292700,29292794..29293159, 29293512..29293587,29293685..29293881,29294884..29295027, 29295177..29295356,29296882..29297089)) /locus_tag="TCM_024877" /product="RNA-binding family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033516001.2" /inference="similar to AA sequence:ricco:28582.m000318" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:PASA:2:TSA:puevd3b024063t1a2; inference alignment:Newbler:10:TSA:cgbaP2_g07691t00001" CDS complement(join(29292815..29293159,29293512..29293587, 29293685..29293881,29294884..29295027,29295236..29295356, 29296882..29297009)) /locus_tag="TCM_024877" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="RNA-binding family protein isoform 1" /protein_id="EOY09461.1" /db_xref="Phytozome:GSVIVT01033516001" /db_xref="TAIR:AT3G15010.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9II07" /translation="MEDMKKRKMEEMGNNGELSTQEELRSLLDPLAKSQLVDLLSRLG SQYPSIAEEIKSIASSDPVHRKLFVRGLAWNTTSETLCAAFQMHGEIEEGAVIYDKTS GKSRGYGFITYKHMESAQSALRAPSKLIDGRMAVCNLACEGLSGASTTPDLAQRKLYI GGLSPDVTSEILLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAIDDPQ KILGGRTIIVKLADTHKGKPVQTQLPAAAVVPVALPMAPSYPQPGKAHPTAAPAGYTY PQTIASYPASSYPSPPAAPAPYPTQPLIPYAPLAAKKDPQGMPPTTPMGMGGYPYYIG KQ" CDS complement(join(29292815..29293159,29293446..29293587, 29293685..29293881,29294884..29295027,29295236..29295356, 29296882..29297009)) /locus_tag="TCM_024877" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="RNA-binding family protein isoform 2" /protein_id="EOY09462.1" /db_xref="Phytozome:GSVIVT01033516001" /db_xref="TAIR:AT3G15010.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9II07" /translation="MEDMKKRKMEEMGNNGELSTQEELRSLLDPLAKSQLVDLLSRLG SQYPSIAEEIKSIASSDPVHRKLFVRGLAWNTTSETLCAAFQMHGEIEEGAVIYDKTS GKSRGYGFITYKHMESAQSALRAPSKLIDGRMAVCNLACEGLSGASTTPDLAQRKLYI GGLSPDVTSEILLNFFGRHGEIEEGSVAYDKDTNESRGFGFVTYKTVEAAKKAIDDPQ KILGVSGQCHYMCSMACLMSDLWRRKGRTIIVKLADTHKGKPVQTQLPAAAVVPVALP MAPSYPQPGKAHPTAAPAGYTYPQTIASYPASSYPSPPAAPAPYPTQPLIPYAPLAAK KDPQGMPPTTPMGMGGYPYYIGKQ" CDS complement(join(29292815..29293159,29293512..29293587, 29293685..29293881,29294884..29295018)) /locus_tag="TCM_024877" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:28582.m000318" /codon_start=1 /product="RNA-binding family protein isoform 3" /protein_id="EOY09463.1" /db_xref="TAIR:AT3G15010.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9II07" /translation="MHGEIEEGAVIYDKTSGKSRGYGFITYKHMESAQSALRAPSKLI DGRMAVCNLACEGLSGASTTPDLAQRKLYIGGLSPDVTSEILLNFFGRHGEIEEGSVA YDKDTNESRGFGFVTYKTVEAAKKAIDDPQKILGGRTIIVKLADTHKGKPVQTQLPAA AVVPVALPMAPSYPQPGKAHPTAAPAGYTYPQTIASYPASSYPSPPAAPAPYPTQPLI PYAPLAAKKDPQGMPPTTPMGMGGYPYYIGKQ" gene complement(29297633..29301373) /locus_tag="TCM_024878" /note="dbxref CacaoGD:Thecc1EG024878" mRNA complement(join(29297633..29297894,29298281..29298350, 29298480..29298534,29300229..29300268,29300484..29300560, 29300700..29300883,29301002..29301373)) /locus_tag="TCM_024878" /product="Myb-like HTH transcriptional regulator family protein" /inference="similar to AA sequence:Phytozome:GSVIVT01033515001" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g11101t00001" CDS complement(join(29297805..29297894,29298281..29298350, 29298480..29298534,29300229..29300268,29300484..29300560, 29300700..29300883,29301002..29301364)) /locus_tag="TCM_024878" /codon_start=1 /product="Myb-like HTH transcriptional regulator family protein" /protein_id="EOY09464.1" /db_xref="Phytozome:GSVIVT01033515001" /db_xref="TAIR:AT5G06800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BGP0" /translation="MDGASSQPKQKRLVLHSVTTPTTPLEQLASAFCATDQSKSHIDF QLAERDSDEPQAPGYEAIPTINQAKDTLLSIVNPHLWRNQCQRFTEKSNGKSYWSQQG SLLSLDHGKLLAEATRNSKVISLCSSRPEQQYPNISRISGTRASSVSSGGRPSNIKTR IKWTVELHKKFVNCVNLLGGAEKATPRAILKLMESNGLTVLQVKSHLQKYRYAKYITG STQAKPDQGVDDDDLPMLYLKSGMQVKEILQMQLEVQRHLCEQLEIQQNLQQAIQEQG KQIQMMLEQLKKTNKA" mobile_element 29299318..29299493 /note="source:CACAO_M_E22942_F59_scaffold_3 2998 3172" /mobile_element_type="retrotransposon:LTR/Copia" gene 29303076..29306237 /locus_tag="TCM_024879" /note="dbxref CacaoGD:Thecc1EG024879" mRNA join(29303076..29303354,29305187..29305332, 29305982..29306237) /locus_tag="TCM_024879" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS join(29305190..29305332,29305982..29306054) /locus_tag="TCM_024879" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09465.1" /translation="MKLIRRDCLTKEDESNRNEGEYVFIVDTDICAVLTISEDMYTNS SDSCQVILKANDLESFVLGRVFECVQK" gene complement(29306438..29310833) /locus_tag="TCM_024880" /note="dbxref CacaoGD:Thecc1EG024880" mRNA complement(join(29306438..29306854,29307578..29307647, 29307783..29307837,29308841..29308881,29308948..29309065, 29309149..29309215,29310709..29310833)) /locus_tag="TCM_024880" /product="Myb-like HTH transcriptional regulator family protein, putative isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024886t1" /inference="similar to AA sequence:ricco:28582.m000316" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6626t1" mRNA complement(join(29306560..29306836,29307578..29307647, 29307783..29307837,29308841..29308881,29308989..29309064)) /locus_tag="TCM_024880" /product="Uncharacterized protein isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024886t1" /inference="similar to AA sequence:ricco:28582.m000316" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6626t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6626t1" CDS complement(join(29306708..29306836,29307578..29307647, 29307783..29307837,29308841..29308859)) /locus_tag="TCM_024880" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28582.m000316; paralog of Thecc1EG024886t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY09467.1" /translation="MTDSTEGKSEKGISTSDVTQLDVKTGLHLAEALQLQLDVQRLLH EQLELRIEEQERQLKMMIDQQQKTNESLLKGQDLDITPFAHFPSKM" CDS complement(join(29306708..29306854,29307578..29307647, 29307783..29307837,29308841..29308859)) /locus_tag="TCM_024880" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28582.m000316; paralog of Thecc1EG024886t1" /codon_start=1 /product="Myb-like HTH transcriptional regulator family protein, putative isoform 1" /protein_id="EOY09466.1" /db_xref="TAIR:AT5G06800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HAD3" /translation="MTDSTEGKSEKGISTSDVTQLDVKTGLHLAEALQLQLDVQRLLH EQLEIQRNLQLRIEEQERQLKMMIDQQQKTNESLLKGQDLDITPFAHFPSKM" mobile_element complement(29309773..29309951) /note="source:CACAO_on_S_E390_scaffold_9 2169 2355" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(29310233..29310282) /note="source:CACAO_M_E44848_F172_scaffold_6 1913 1962" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 29310240..29310306 /note="source:CACAO_M_E24751_F297_scaffold_4 1273 1329" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(29313264..29314304) /note="source:scaffold_5_CACTA_0584 8476 9499" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29314305..29314952) /note="source:INTACT52F_F339_scaffold_1-int 329 971" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(29314953..29315049) /note="source:scaffold_5_CACTA_0584 8379 8475" /mobile_element_type="transposon:TIR/CACTA" gene complement(29320628..29329251) /locus_tag="TCM_024883" /note="dbxref CacaoGD:Thecc1EG024883" mRNA complement(join(29320628..29324480,29324792..29326255, 29326334..29326718,29329003..29329251)) /locus_tag="TCM_024883" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g23070.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008095t1" /inference="similar to AA sequence:Phytozome:Glyma10g13500.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.24 coverage; weak similarity to Gag-pro" CDS complement(join(29320863..29324480,29324792..29326255, 29326334..29326666)) /locus_tag="TCM_024883" /note="paralog of Thecc1EG008095t1; weak similarity to Gag-pro" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09468.1" /db_xref="Phytozome:Glyma10g13500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D0E2V7" /translation="MESSWPSSSYDGIYQVTQHMASTQQSEGDCLSKDHFSSLPDRVH LDLKQNDFTDLLNIWDKWGAITRANFDRKYGHIARLLKVQIDEHLLKAIVQFWDPSYR CFVFNKIDMKTGHRRKLAKMMGITSAEVDQNLRKKGDNECIPWSFLRSYIMKQRDTEQ GQLVMALGIYGLVIFPKVLGHIEVRIIDFFEQVVNKANPSPSILAETLRSLNYCRRKG EGRFVGCAQLLSIWIVSHFECKVDKFRKPFHPQTAPIREFCESEWPENRTKEQWISRL RELMSVEVTWRAPWMPHHPVLYKCGNEPWVQLMGPWGAISYAPIMVRRQFGSEQFVPM THRLNTLEFAYEEPGFLKRIEEIAQAWKKTSRVDQGRYTDEVTIGYQIWHDQRVKDVV YPKEDVLRGPVDPEPRDALLESELARKKSEAENASWKQRYEDLQKECEKMKREVSEQR KKVRKMEGKYESLNDKFSTTTSELQREIQVRENRGNELQTHNDGLRRQVRFQQESIQL LRQEYEELEGVMTTYQQEYERLKQQSTRIQEWGESYRQAYTEKYDQMDYLVWQMREVA YKARSMAWKTDILRSQIFPVGKQEQQLIKYLDERARIMEEEQRERMDRMERAQEEMRE QLAKMMKLMMSLSKGKRAIEEPAPSENPPAQDSGNQREDPPYPPGFTPPHAQTSQRVH PQVMPSVYYNAPPPMGHQPTHGQFGPYLGVNPIEPIHVPDLDDPKEQEKLRKDSSQTR ENEKDQKKYDLLEERLRAIEGVDRFGTMDATELCLVPDVLIPAKFKVPEFEKYDETKC PMAHITMNCRKMAAQSHDDKLLIHLFQDSLTGSAARWYVQLDRNRIKTWKDLARAFIA QYKHVAELAPDRLSLQTMEKKQSENFKEYAQRWRDTAAQVQPPLTDKEMTVLFINTLR APFYERLIGNATKNFTDLVLSGEIIEGAIKSGKIEGHEVASSKKGSTPRKKEGDVQAV AHDSQQAHNFNLYYPYPPYQPFYPHIGNITQNPYVYQPIPQPTFQTNVLPQTPPPRPI ASTNNPGHGQRGPKTTPERPKFDHIPVPYTTLLPQLIEKRLLTQTPLEPLRPPFPKWY DPNAHCDYHFGIQGHSTENCTALKHKVQALIKAGLLNFTKKDSSSVDGNPLLNHGRPT VNAIHEGMIRRVKKGIDEIQTPMDKVFEALSKINAITPEPIDTKELGHDLAYSCKFHM GAIGHSIQNCDGFRRKLQELMDSSIIEFYEGAEENLVGTIYGDTPAEVASSSFGANKP KPLTIFYEENKSPMNDTSPTMIRNGITIEVPSPFPYKNDKAVPWNYECNILGTASSAP QASFEDITGVGGITRSGRCYSPEVAERVEKGKPAQGEGGLKKADTFSKDQVDEFVVAP NNEVKSPVTEKEAGEFLKFIKHSEYSVVEQLTKMPAPISLLSLLLNSEAHKNALLKVL NQAYVAQDISVEKLDHIVGNITVGNFIAFNDEEIPPGGRGSNKALHITIKCKDHAVPR VLVDNGSALNVMPRSTLTKLLVDVSYMRPSRMVVRAFDGTTREVVGDIELPIKIGPCI FEVQFQVMDIAPSYNCLLGRPWIHMAGAIPSSLHQKVKFIAEGQLISVCAEEDILAIQ PSSAPYVEATEEVPECSFRSFEFVNATYVGERKVIPTPRLSVATKMGVKQTVGKGCRV GLGLGKNLQGINRPLTPMKNEERFGLGYKPTKEERRKLTAQKKIKRMAQLEGKKEEFG ERTIPHLYETFRSAGFIHPEAPPKVNQVLRIFDELSIHMIRDEEPDGKIPVVYPVLPG EELSNWTATELPIIFKSSKM" mobile_element complement(29328479..29329486) /note="source:INTACT59_F126_scaffold_9-int 1 971" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 29330550..29330746 /note="source:CACAO_hAT_E2547_scaffold_5 2 197" /mobile_element_type="transposon:TIR/hAT" mobile_element 29330747..29330815 /note="source:CACAO_on_E6_scaffold_1 2875 2938" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(29331186..29331697) /note="source:CACAO_hAT_E962_scaffold_2 4364 4833" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(29333085..29333222) /note="source:CACAO_hAT_E962_scaffold_2 3291 3433" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(29333217..29336304) /note="source:CACAO_hAT_E962_scaffold_2 1 3018" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(29336482..29336545) /note="source:CACAO_M_S_E6117_F51_scaffold_2 1127 1190" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(29336517..29336607) /note="source:scaffold_4_CACTA_0482 7622 7718" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29336627..29336810) /note="source:CACAO_on_E12_scaffold_2 1 165" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(29336746..29336810) /note="source:MITE_hAT_11 1 60" /mobile_element_type="transposon:TIR/MITE" gene complement(29337173..29340643) /locus_tag="TCM_024886" /note="dbxref CacaoGD:Thecc1EG024886" mRNA complement(join(29337173..29337799,29338494..29338563, 29338699..29338753,29339116..29339155,29339253..29339329, 29339416..29339629,29339764..29340371)) /locus_tag="TCM_024886" /product="Myb-like HTH transcriptional regulator family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s20540.1" /inference="similar to AA sequence:ricco:28582.m000316" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2274t3" CDS complement(join(29337587..29337799,29338494..29338563, 29338699..29338753,29339116..29339155,29339253..29339329, 29339416..29339629,29339764..29340366)) /locus_tag="TCM_024886" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28582.m000316" /codon_start=1 /product="Myb-like HTH transcriptional regulator family protein, putative isoform 1" /protein_id="EOY09469.1" /db_xref="TAIR:AT5G06800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HAD3" /translation="MNSRKIDCQEHLEQNLGFSSVCNFEYVNHDGFQQPWNMGIRIQA PAMEEGSQQENPGAAKTSNTIMSGFLSPASAFYATERCMGFSEYGCQGDRSSYTSQYN KSCNSHLPSFHASGDNFSIESVAQDETNYELRNTFESLVKSQIYCNQYQKSSEKSYKI PCCNSQGSQVSPHDQSNFLGNNAVTVGSHYSVPFRGNQDQRAYCNSYSSPLAQLSIFQ QGKQSSNCSSGTFSVSSGNSVSTGAALASKTRIRWTQDLHDKFVECVKRLGGAEKATP KAILKLMDTEGLTIFHVKSHLQKYRIAKYMPDSAEGKSDKRSSTSDVTQLDVKTGLHL TEALQLQLDVQRRLHEQLEIQRNLQLRIEEQGRQLKMMIDQQQKTNESLLKKQDLDIT PFDHDPSFSLEDVEVSIAENSGDAHFPSKIS" mRNA complement(join(29338728..29338753,29339055..29339155, 29339253..29339329,29339416..29339629,29339764..29340643)) /locus_tag="TCM_024886" /product="Myb-like HTH transcriptional regulator family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s20540.1" /inference="similar to AA sequence:ricco:28582.m000316" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2053t5; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2274t3" CDS complement(join(29339105..29339155,29339253..29339329, 29339416..29339629,29339764..29340366)) /locus_tag="TCM_024886" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28582.m000316" /codon_start=1 /product="Myb-like HTH transcriptional regulator family protein, putative isoform 2" /protein_id="EOY09470.1" /db_xref="TAIR:AT5G06800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HAD3" /translation="MNSRKIDCQEHLEQNLGFSSVCNFEYVNHDGFQQPWNMGIRIQA PAMEEGSQQENPGAAKTSNTIMSGFLSPASAFYATERCMGFSEYGCQGDRSSYTSQYN KSCNSHLPSFHASGDNFSIESVAQDETNYELRNTFESLVKSQIYCNQYQKSSEKSYKI PCCNSQGSQVSPHDQSNFLGNNAVTVGSHYSVPFRGNQDQRAYCNSYSSPLAQLSIFQ QGKQSSNCSSGTFSVSSGNSVSTGAALASKTRIRWTQDLHDKFVECVKRLGGAEKATP KAILKLMDTEGLTIFHVKSHLQKYRIAKYMPDSAEGIP" mobile_element 29345190..29345277 /note="source:scaffold_2_CACTA_0281 1602 1695" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29345206..29345305) /note="source:CACAO_on_SS_E42_scaffold_2 3146 3245" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(29345866..29346752) /note="source:INTACT349_F203_scaffold_6-int 1 907" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 29352560..29352820 /note="source:scaffold_5_CACTA_0586 11519 11775" /mobile_element_type="transposon:TIR/CACTA" mobile_element 29353453..29353740 /note="source:CACAO_M_E23991_F4_scaffold_4 4009 4317" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 29355897..29356179 /note="source:INTACT375F_F353_scaffold_3-int 14361 14678" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(29355974..29356493) /note="source:INTACT554_F250_scaffold_7-int 17191 17743" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(29357285..29357865) /note="source:CACAO_on_E205_scaffold_7 3383 3969" /mobile_element_type="transposon:TIR/Mutator" mobile_element 29357496..29365430 /note="source:INTACT1313F_F380_scaffold_7-int 1472 9447" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 29365418..29370259 /note="source:INTACT1313F_F380_scaffold_7-int 9768 14822" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(29369895..29370925) /note="source:CACAO_M_E12044_F76_scaffold_2 6540 7533" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(29370914..29371055) /note="source:INTACT641_F282_scaffold_1-int 6510 6636" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 29371056..29371078 /note="source:INTACT444_F216_scaffold_4-int 651 682" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(29373668..29374428) /note="source:INTACT532_F84_scaffold_2-int 1516 2276" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 29374539..29375277 /note="source:scaffold_5_CACTA_0612 6554 7278" /mobile_element_type="transposon:TIR/CACTA" mobile_element 29375579..29375984 /note="source:INTACT334_F200_scaffold_2-int 186 592" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 29380356..29384325 /locus_tag="TCM_024889" /note="dbxref CacaoGD:Thecc1EG024889" mRNA join(29380356..29380454,29383263..29384325) /locus_tag="TCM_024889" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene22646" /inference="similar to AA sequence:Phytozome:POPTR_0016s04820.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g16350t00001" CDS 29383290..29383892 /locus_tag="TCM_024889" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09471.1" /db_xref="Phytozome:POPTR_0016s04820.1" /db_xref="TAIR:AT5G06790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9II04" /translation="MVGPSYLKTLLPLHAFSLKSPSSTLNSMKIKTLIHTLIYAQVCR LSRAFSKAKSIAIQIYKESKPIHFISNSKTSKKSYKHKKLFFGSFRLHYNWCSSHVTP VPAPVLEGCTATHLYYDSTWNSVISTEQCDDQDTVESELSGYLQWLEEKKVNGNSTAE TDINEIDRLAEMFIADCHEKFRLEKQESYRRFQEMLARSM" gene complement(29390994..29391591) /locus_tag="TCM_024890" /note="dbxref CacaoGD:Thecc1EG024890" mRNA complement(29390994..29391591) /locus_tag="TCM_024890" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s04810.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6686t1" CDS complement(29391299..29391562) /locus_tag="TCM_024890" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09472.1" /translation="MKISSINLTAFVALILVHILIMCSPLCLCHGEVPPGERYQMSRK LLSAVASFPAGENKLNGAMKEPKKAVEPSLRKAPPSVPNPTQN" mobile_element 29391665..29391726 /note="source:CACAO_M_E36086_F98_scaffold_5 669 734" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 29393533..29393643 /note="source:scaffold_5_CACTA_0580 6635 6724" /mobile_element_type="transposon:TIR/CACTA" gene 29394426..29402370 /locus_tag="TCM_024891" /note="dbxref CacaoGD:Thecc1EG024891" mRNA join(29394426..29394838,29395852..29396054, 29396156..29396265,29396371..29396491,29396714..29396941, 29397463..29397531,29400998..29401237,29401336..29401404, 29401507..29401570,29402076..29402140,29402247..29402370) /locus_tag="TCM_024891" /product="Emsy N Terminus/ plant Tudor-like domains-containing protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene22622" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005943t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033513001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06974t00001" mRNA join(29394499..29394808,29395852..29396054, 29396156..29396265,29396371..29396491,29396714..29396941, 29397463..29397531,29400998..29401237,29401336..29401404, 29401507..29401684) /locus_tag="TCM_024891" /product="Emsy N Terminus/ plant Tudor-like domains-containing protein isoform 3" /inference="alignment:exonerate-protein:2:frave:gene22622" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005943t1" /inference="similar to AA sequence:Phytozome:Glyma09g17250.2" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6705t3; inference alignment:Newbler:10:TSA:cgbaB_g06974t00001" mRNA join(29394547..29394808,29395852..29396054, 29396156..29396265,29396371..29396491,29396714..29396941, 29397463..29397531,29400998..29401237,29401336..29401404, 29401507..29401570,29402076..29402268) /locus_tag="TCM_024891" /product="Emsy N Terminus/ plant Tudor-like domains-containing protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene22622" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005943t1" /inference="similar to AA sequence:Phytozome:Glyma09g17250.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06974t00001; inference alignment:Newbler:10:TSA:cgbaB_g06974t00001" CDS join(29394811..29394838,29395852..29396054, 29396156..29396265,29396371..29396491,29396714..29396941, 29397463..29397531,29400998..29401237,29401336..29401404, 29401507..29401570,29402076..29402122) /locus_tag="TCM_024891" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG005943t1" /codon_start=1 /product="Emsy N Terminus/ plant Tudor-like domains-containing protein isoform 1" /protein_id="EOY09473.1" /db_xref="Phytozome:GSVIVT01033513001" /db_xref="TAIR:AT5G13020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K2F0" /translation="MDYEVCDSSGTDDDLPPSHQTRVSRRGNIAGNGRSIVGSASYSR MHFDMEAQIHQLEQEAYCSVLRAFKAQSDAITWEKEGLITELRKELRVSDDEHRELLT KVNSDDIIRRIRDWRQAGENQAARLSASQPVHSLLPSPTVSASRKKQKTSQSGQSLPG LSSAKAMHFSSTVSAGNRQFNNRGSVGCLLANEPAEGATFEPLIGRKVWTRWPEDNNF YEAVITDYNPSEGRHALVYDINTANETWEWVDLKEISPDDIRWDGEDPGISYRGGPGF HVAKKSFSRGAPAPGPGRGRGSVKGQFRKEFLPSQNGIVKKVSDDIELLNTETLVKEV ERVFDTSQPDPLELEKAKKKLKEHEQALIDAIARLADASDGESDGEQPFSRGQPMERL " CDS join(29395956..29396054,29396156..29396265, 29396371..29396491,29396714..29396941,29397463..29397531, 29400998..29401237,29401336..29401404,29401507..29401570, 29402076..29402122) /locus_tag="TCM_024891" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005943t1" /codon_start=1 /product="Emsy N Terminus/ plant Tudor-like domains-containing protein isoform 2" /protein_id="EOY09474.1" /db_xref="Phytozome:Glyma09g17250.1" /db_xref="TAIR:AT5G13020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K2F0" /translation="MHFDMEAQIHQLEQEAYCSVLRAFKAQSDAITWEKEGLITELRK ELRVSDDEHRELLTKVNSDDIIRRIRDWRQAGENQAARLSASQPVHSLLPSPTVSASR KKQKTSQSGQSLPGLSSAKAMHFSSTVSAGNRQFNNRGSVGCLLANEPAEGATFEPLI GRKVWTRWPEDNNFYEAVITDYNPSEGRHALVYDINTANETWEWVDLKEISPDDIRWD GEDPGISYRGGPGFHVAKKSFSRGAPAPGPGRGRGSVKGQFRKEFLPSQNGIVKKVSD DIELLNTETLVKEVERVFDTSQPDPLELEKAKKKLKEHEQALIDAIARLADASDGESD GEQPFSRGQPMERL" CDS join(29395956..29396054,29396156..29396265, 29396371..29396491,29396714..29396941,29397463..29397531, 29400998..29401237,29401336..29401404,29401507..29401593) /locus_tag="TCM_024891" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG005943t1" /codon_start=1 /product="Emsy N Terminus/ plant Tudor-like domains-containing protein isoform 3" /protein_id="EOY09475.1" /db_xref="Phytozome:Glyma09g17250.2" /db_xref="TAIR:AT5G13020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K2F0" /translation="MHFDMEAQIHQLEQEAYCSVLRAFKAQSDAITWEKEGLITELRK ELRVSDDEHRELLTKVNSDDIIRRIRDWRQAGENQAARLSASQPVHSLLPSPTVSASR KKQKTSQSGQSLPGLSSAKAMHFSSTVSAGNRQFNNRGSVGCLLANEPAEGATFEPLI GRKVWTRWPEDNNFYEAVITDYNPSEGRHALVYDINTANETWEWVDLKEISPDDIRWD GEDPGISYRGGPGFHVAKKSFSRGAPAPGPGRGRGSVKGQFRKEFLPSQNGIVKKVSD DIELLNTETLVKEVERVFDTSQPDPLELEKAKKKLKEHEQALIDAIARLADASDGESG NKYMCT" gene complement(29402592..29404107) /locus_tag="TCM_024893" /note="dbxref CacaoGD:Thecc1EG024893" mRNA complement(join(29402592..29403239,29403362..29403428, 29403593..29403637,29404082..29404107)) /locus_tag="TCM_024893" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1650t5" CDS complement(29403036..29403230) /locus_tag="TCM_024893" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09476.1" /translation="MFLISSAAPKSVNTSIEKVKLLDVSSCLVNRSWLLNCLLSSIVT YLLWFSCKAVFFVRIFPPFF" gene complement(29405087..29410511) /locus_tag="TCM_024895" /note="dbxref CacaoGD:Thecc1EG024895" mRNA complement(join(29405087..29406299,29408033..29408699, 29408790..29409662,29410350..29410511)) /locus_tag="TCM_024895" /product="DNA-binding bromodomain-containing protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400011203" /inference="similar to AA sequence:frave:gene22621" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.46 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14161t1" CDS complement(join(29405226..29406299,29408033..29408699, 29408790..29409130)) /locus_tag="TCM_024895" /note="dbxref frave:gene22621" /codon_start=1 /product="DNA-binding bromodomain-containing protein, putative" /protein_id="EOY09477.1" /db_xref="TAIR:AT3G57980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AP96" /translation="MAKPDNFPEKQTWGTWEELLLACAVHRYGTESWDSVAMELQKRT STLRHLFLTPLSCQQKFQELKLRFAENDAGGDDAKTTNNITTAVPWLDELRKLRVAEL RREVQQYDLSIVSLQLKVQRLKEEREQSLGDNGKETEKTDLEREEESNKKEEENEPEN QIQKPVHAGEESDRENRSVNESNSTDPKDESPEAGPEEAKVEPVPVEPEGGETGKEME SEKPAGEDSCNGSCDSVAKESAGNSERGDPGTEPGDSPESVAESKGEEPNRESSDVQS SASLSGKEKKKAEPDEPDNEELDQSPAIKVSIESQPLVEFLEIFRSHNLGSLFERRLD GQETPDYLNLVRQHLDFETIRTRLEEGWYSGCKSKFFRDLLLLLNNAIVFFGKKSSEY AAAVELRPLVSKEIAVQIPNTNLLPKAQSYTLLESQMPMKPEPEPALSLSMKPKLSVP LIACRKRSSITAKASTSSSGQDKKRQPIATLMNEKPVLDWKQHDKSSEKAEESLVTKK RTRERSASGARKASKNVKTRSNTSTNKNSDANTNTAISSKGGSSNEDSESKAEKEKTN ANISSKKRSAANFLNRMRRSSSSNNGPLIETLKGVISSDNGKGDGGEQKKNSNSKGDQ RKDQISTPRTRSGGKRAKEMGSPAKRSTGRPPKRAAAPSPATPSVPAKRGREVVENEL GSGHAKKRSRK" gene complement(29409662..29413665) /locus_tag="TCM_024896" /note="dbxref CacaoGD:Thecc1EG024896" mRNA complement(join(29409662..29409690,29411896..29413665)) /locus_tag="TCM_024896" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:28694.m000687" /inference="similar to AA sequence:ricco:28694.m000687" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.68 coverage" CDS complement(29412115..29413164) /locus_tag="TCM_024896" /note="dbxref ricco:28694.m000687" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09478.1" /db_xref="TAIR:AT3G57990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HAC7" /translation="MKASLKFREEKRPVLRAKVPLSILGLPFQSGIVAGESKELTLNL STFFESGPSIKIAYRPNDTWNPFSLIVKTGTGPFGSPISSSMLMSAEFNLLGPGNPSF MLHFKPQFGDFSIKKSQSSVFDRAVKPRSGVVLEDDSSIEAVDTPAVNGGAGGFFAEK RKLAALNWGDITGILSGMEVAAKTAVPVKGKALLKFRWGMRIPSEMKSGVGRFGDPAA GISNSKIPFLVMDKIGIEHVDSVESKQAISTDSKAGSELGSNADLATACYTVKRQLEA LQAENGFLKRAVEDLRREISGGQFGDLNSGTYREMERNGVSRSKMERRNNDKKSTEVD VNEELKKALKGATGA" mobile_element complement(29414498..29414724) /note="source:scaffold_1_CACTA_0005 221 438" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29415449..29416006) /note="source:scaffold_5_CACTA_0614 1 438" /mobile_element_type="transposon:TIR/CACTA" gene 29416528..29419248 /locus_tag="TCM_024897" /note="dbxref CacaoGD:Thecc1EG024897" mRNA join(29416528..29416745,29417102..29417182, 29417309..29417570,29417642..29417732,29418005..29418221, 29418328..29418419,29418822..29419248) /locus_tag="TCM_024897" /product="Non-structural maintenance of chromosome element 4, putative" /inference="alignment:exonerate-protein:2:frave:gene22617" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040402t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033510001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc20t3" CDS join(29416622..29416745,29417102..29417182, 29417309..29417570,29417642..29417732,29418005..29418221, 29418328..29418419,29418822..29418995) /locus_tag="TCM_024897" /note="paralog of Thecc1EG040402t1" /codon_start=1 /product="Non-structural maintenance of chromosome element 4, putative" /protein_id="EOY09479.1" /db_xref="Phytozome:GSVIVT01033510001" /db_xref="TAIR:AT1G51130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IHZ9" /translation="MTRIIKRSNSSETDANDSDHQHFSDRRTLRSRYLAVKNLIFDER DDMCRADSAKFNSIFNEVESLHQHVQKPREQIADAEALLDITNSLVTSVKATNGNGIT VVDFVNSLLRDFAKQSGLGSSSSSRQGGRTLIDYKKIGIEVSHVFRSSPGCRTMIGPM NTQLNQRRASVCRKRVRPTENVHPAEVDDADTQKRTNTDGNMSTMFDILRMHRRVRLE HLVLNRSSFAQTVENLFTLSFLVKDGRAEIKVDEKGFHLVSPRNAPAARAVTSREVVY SHFVFRFDFNDWKRMTNYVEVGQELMPNRDQVDVSSKFHSDTYNGQFEATEPTTPIRK LSRNRGLVLQEQ" gene complement(29419968..29425843) /locus_tag="TCM_024898" /note="dbxref CacaoGD:Thecc1EG024898" mRNA complement(join(29419968..29420209,29420388..29420687, 29420927..29421025,29422002..29422059,29422214..29422265, 29422350..29422401,29422505..29422616,29422701..29422775, 29423427..29423474,29423552..29423636,29423734..29423789, 29423889..29423998,29424422..29424748,29425405..29425591)) /locus_tag="TCM_024898" /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene22616" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040401t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s04600.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc140t6" mRNA complement(join(29420122..29420687,29420927..29421025, 29422002..29422059,29422211..29422265,29422350..29422401, 29422505..29422616,29422701..29422775,29423427..29423474, 29423552..29423636,29423734..29423789,29423889..29423998, 29424422..29424748,29425405..29425843)) /locus_tag="TCM_024898" /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene22616" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040401t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s04600.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6797t2; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc140t6" mRNA complement(join(29420122..29420209,29422001..29422059, 29422214..29422265,29422350..29422401,29422505..29422616, 29422701..29422775,29423427..29423474,29423552..29423636, 29423734..29423789,29423889..29423998,29424422..29424748, 29425405..29425662)) /locus_tag="TCM_024898" /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 3" /inference="alignment:exonerate-protein:2:frave:gene22616" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040401t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s04600.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc139t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc140t6" CDS complement(join(29420155..29420209,29422001..29422059, 29422214..29422265,29422350..29422401,29422505..29422616, 29422701..29422775,29423427..29423474,29423552..29423636, 29423734..29423789,29423889..29423998,29424422..29424701)) /locus_tag="TCM_024898" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG040401t1" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 3" /protein_id="EOY09482.1" /db_xref="Phytozome:POPTR_0016s04600.1" /db_xref="TAIR:AT2G05990.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HLJ7" /translation="MMGTAAAPGTYMATIKPCISSSRKMLVSSAVNISTENKEASWTR LASSSHISLRQPFLRKITPGPVKFEKFVTRAISETNDNKPLPGLPIDLRGKRAFIAGV ADDNGYGWAIAKSLAAAGAEIIVGTWVPALNIFESSLRRGKFDESRVLPDGSLMEITK VYPMDAVYDCPEDVPEDVKTNKRYAGSSNWTVQEVVECVKKDFGSIDILVHSLANGPE VSKPLLETSRNGYLAALSASSYSFVSLLRNFLPIMNPGGASISLTYIASERIIPGYGG GMSSAKAALESDTRVLAFEAGRKHKVRVNTISAGDVMGVCALQLDKPIWEF" CDS complement(join(29420536..29420687,29420927..29421025, 29422002..29422059,29422214..29422265,29422350..29422401, 29422505..29422616,29422701..29422775,29423427..29423474, 29423552..29423636,29423734..29423789,29423889..29423998, 29424422..29424701)) /locus_tag="TCM_024898" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG040401t1" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 1" /protein_id="EOY09480.1" /db_xref="Phytozome:POPTR_0016s04600.1" /db_xref="TAIR:AT2G05990.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HLJ7" /translation="MMGTAAAPGTYMATIKPCISSSRKMLVSSAVNISTENKEASWTR LASSSHISLRQPFLRKITPGPVKFEKFVTRAISETNDNKPLPGLPIDLRGKRAFIAGV ADDNGYGWAIAKSLAAAGAEIIVGTWVPALNIFESSLRRGKFDESRVLPDGSLMEITK VYPMDAVYDCPEDVPEDVKTNKRYAGSSNWTVQEVVECVKKDFGSIDILVHSLANGPE VSKPLLETSRNGYLAALSASSYSFVSLLRNFLPIMNPGGASISLTYIASERIIPGYGG GMSSAKAALESDTRVLAFEAGRKHKVRVNTISAGPLRSRAAKAIGFIDMMIDYSLANA PLQKELSAEEVGNAAAFLASPMSSAITGAVVYVDNGLNAMGVGVDSPVFADLDIPKDN " CDS complement(join(29420536..29420687,29420927..29421025, 29422002..29422059,29422211..29422265,29422350..29422401, 29422505..29422616,29422701..29422775,29423427..29423474, 29423552..29423636,29423734..29423789,29423889..29423998, 29424422..29424701)) /locus_tag="TCM_024898" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG040401t1" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein isoform 2" /protein_id="EOY09481.1" /db_xref="Phytozome:POPTR_0016s04600.1" /db_xref="TAIR:AT2G05990.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HLJ7" /translation="MMGTAAAPGTYMATIKPCISSSRKMLVSSAVNISTENKEASWTR LASSSHISLRQPFLRKITPGPVKFEKFVTRAISETNDNKPLPGLPIDLRGKRAFIAGV ADDNGYGWAIAKSLAAAGAEIIVGTWVPALNIFESSLRRGKFDESRVLPDGSLMEITK VYPMDAVYDCPEDVPEDVKTNKRYAGSSNWTVQEVVECVKKDFGSIDILVHSLANGPE VSKPLLETSRNGYLAALSASSYSFVSLLRNFLPIMNPGGASISLTYIASERIIPGYGG GMSSAKAALESDTRVVLAFEAGRKHKVRVNTISAGPLRSRAAKAIGFIDMMIDYSLAN APLQKELSAEEVGNAAAFLASPMSSAITGAVVYVDNGLNAMGVGVDSPVFADLDIPKD N" gene 29426959..29429686 /locus_tag="TCM_024899" /note="dbxref CacaoGD:Thecc1EG024899" mRNA join(29426959..29427284,29428580..29429686) /locus_tag="TCM_024899" /product="KH domain-containing protein / zinc finger family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:27843.m000161" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040388t2" /inference="similar to AA sequence:ricco:27843.m000161" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b024083t1a3; inference alignment:Newbler:10:TSA:cgbaP2_g01802t00002" mRNA join(29426984..29427054,29427145..29427284, 29427525..29427579,29428580..29429573) /locus_tag="TCM_024899" /product="KH domain-containing protein / zinc finger family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:27843.m000161" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040388t1" /inference="similar to AA sequence:ricco:27843.m000161" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01802t00002; inference alignment:Newbler:10:TSA:cgbaP2_g01802t00002" CDS join(29427212..29427284,29427525..29427579, 29428580..29429330) /locus_tag="TCM_024899" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:27843.m000161; paralog of Thecc1EG040388t1" /codon_start=1 /product="KH domain-containing protein / zinc finger family protein isoform 1" /protein_id="EOY09483.1" /db_xref="TAIR:AT5G06770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D6MKN0" /translation="MDTRKRGRPEAGFNSNGGFKKTKPEMESTGVGSKSKPCTKFFST AGCPFGESCHFLHYVPGGYNAVAQIMNLAPAVPPASRNMAAPPPIPNGSSAVKTRLCN KFSSAEGCKFGDKCHFAHGDWELGKPIAPSHDDPRGMATIAGRMGSRMEPPPPSGPAA SFGASATAKISVDASLAGAIIGKGGVHSKQICRRTGAKLSIREHESDPTLRNIELEGS FEQIKQASAMVRELISSLGPVSGPAKTPGVPGGQGHPGSNYKTKLCDNFAKGSCTFGE RCHFAHGTAELRKSAV" CDS 29428659..29429330 /locus_tag="TCM_024899" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:27843.m000161; paralog of Thecc1EG040388t2" /codon_start=1 /product="KH domain-containing protein / zinc finger family protein isoform 2" /protein_id="EOY09484.1" /db_xref="TAIR:AT5G06770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q69XQ3" /translation="MNLAPAVPPASRNMAAPPPIPNGSSAVKTRLCNKFSSAEGCKFG DKCHFAHGDWELGKPIAPSHDDPRGMATIAGRMGSRMEPPPPSGPAASFGASATAKIS VDASLAGAIIGKGGVHSKQICRRTGAKLSIREHESDPTLRNIELEGSFEQIKQASAMV RELISSLGPVSGPAKTPGVPGGQGHPGSNYKTKLCDNFAKGSCTFGERCHFAHGTAEL RKSAV" gene complement(29432240..29433375) /locus_tag="TCM_024900" /note="dbxref CacaoGD:Thecc1EG024900" mRNA complement(join(29432240..29432806,29433238..29433375)) /locus_tag="TCM_024900" /product="Late Embryogenesis Abundant 4-5, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g32920.1" /inference="similar to AA sequence:Phytozome:Glyma03g30040.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03377t00001" CDS complement(join(29432402..29432806,29433238..29433324)) /locus_tag="TCM_024900" /codon_start=1 /product="Late Embryogenesis Abundant 4-5, putative" /protein_id="EOY09485.1" /db_xref="Phytozome:Glyma03g30040.1" /db_xref="TAIR:AT5G06760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q01417" /translation="MQSIKERAANIAASAKAGLEKTKATVEEKVEKLTAHDPVQKEMA TQKKEERIHQAELDKQEARLHNAVAKQAGREDGYTATGTHTYTATGTHVFDDWDRGQP TGARQMSAFPGHGTGQPTVQVDVGRAEAHPIGIKTGAGGSKTHNTRVEGDPHGYGTGG THS" gene complement(29435514..29437621) /locus_tag="TCM_024901" /note="dbxref CacaoGD:Thecc1EG024901" mRNA complement(join(29435514..29436236,29437463..29437621)) /locus_tag="TCM_024901" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Newbler:10:TSA:cgbaB_g13480t00001" CDS complement(join(29435817..29436236,29437463..29437549)) /locus_tag="TCM_024901" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09486.1" /translation="MQSMKETAANAGASAEAGLEKAKASVQEKTRNPNEKEMARERKE ERKELAEQMKQEVRDQTAQLGKLVVATPRVAGTIEATLVATLPRVLAMTRAGMLASVT KLAMMAMLAMLETQQVVTLIRQLGAKITEVGNTRVGTGRSGSLTMLQGRLEGTPAWLG MIHMDPNG" mobile_element 29441957..29444888 /note="source:CACAO_M_S_E66490_F33_scaffold_5 1 2932" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 29445011..29446896 /note="source:CACAO_M_E14113_F106_scaffold_3 7637 9510" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(29446896..29447623) /note="source:CACAO_M_E22484_F328_scaffold_3 5949 6674" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(29447724..29448851) /note="source:CACAO_M_E22484_F328_scaffold_3 4820 5947" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(29448851..29449686) /note="source:CACAO_M_E59204_F33_scaffold_9 1 870" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 29450996..29451320 /note="source:CACAO_M_E14113_F106_scaffold_3 11325 11649" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 29451321..29454044 /note="source:CACAO_M_E44077_F73_scaffold_5 1 2724" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 29454045..29454972 /note="source:CACAO_M_E14113_F106_scaffold_3 11645 12557" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 29454980..29455069 /note="source:scaffold_8_CACTA_0860 4487 4576" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29458277..29458454) /note="source:INTACT19F_F94_scaffold_1-int 15742 15872" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 29460826..29465256 /locus_tag="TCM_024902" /note="dbxref CacaoGD:Thecc1EG024902" mRNA join(29460826..29461310,29463864..29465256) /locus_tag="TCM_024902" /product="Microsomal oleic acid desaturase" /inference="alignment:exonerate- protein:2:Phytozome:Sb04g029920.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040384t3" /inference="similar to AA sequence:Phytozome:POPTR_0006s20640.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.34 coverage; inference alignment:Newbler:10:TSA:cgbaL_g09297t00001" CDS 29463875..29465026 /locus_tag="TCM_024902" /note="paralog of Thecc1EG040384t3" /codon_start=1 /product="Microsomal oleic acid desaturase" /protein_id="EOY09487.1" /db_xref="Phytozome:POPTR_0006s20640.1" /db_xref="TAIR:AT3G12120.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LLL7" /translation="MGAGGRMSVPPTPKKSEFQSLKRVPCSKPPFTLSQVKKAIAPHC FQRSVLRSFSYLVYDFILVSLFYYVATDYFHQLPHPLSYVAWPIYWAVQGSVLTGVWV IAHECGHHAFSDYQWLDDTVGFVLHSSLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPK QKAAIRWWAKYLNNPPGRFLTLTIQLTIGWPLYLAFNVSGRPYERFACHYDPYGPIYN YRERLQIYISDAGVLAITYCLYRLALAKGLAWVVCVYGVPLLVVNAFLVMITYLQHTH PSLPHYDSLEWDWFKGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATK AIKPVLGEYYQFDGTPVYKALWREAKECIYVEPDEGEHGKGVFWYRNKL" mobile_element complement(29470415..29470452) /note="source:scaffold_3_CACTA_0382 1857 1894" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29470419..29470460) /note="source:CACAO_M_S_E14932_F233_scaffold_2 1411 1451" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 29471037..29478144 /locus_tag="TCM_024904" /note="dbxref CacaoGD:Thecc1EG024904" mRNA join(29471037..29471066,29472955..29473895, 29478025..29478144) /locus_tag="TCM_024904" /product="VQ motif-containing protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s20650.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s20650.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6682t1" CDS join(29471063..29471066,29472955..29473598) /locus_tag="TCM_024904" /codon_start=1 /product="VQ motif-containing protein, putative" /protein_id="EOY09488.1" /db_xref="Phytozome:POPTR_0006s20650.1" /db_xref="TAIR:AT2G42140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HLJ3" /translation="MSSPLNNIFPITFFSYISIPPFISLNKYTNSPTSFSFLVSLKHF SMENIMIRNQTRMPPSTPSALSIHKDSQTISKAKPKIRIIHIFAPEIIKTDVANFREL VQRLTGKPAQEKGCKKKARIGRRDHQEPRITRFCDKPVAAAVAKKMELRTGFLAGLET RERVKEEEGMWNDENSGGFLSGFGDLDGFIQELGEFPLLPLDASHMHGFEEAQLA" gene complement(29478680..29486051) /locus_tag="TCM_024905" /note="dbxref CacaoGD:Thecc1EG024905" mRNA complement(join(29478680..29478968,29480137..29480189, 29481935..29482151,29483497..29483593,29483681..29483764, 29483844..29483965,29485798..29486051)) /locus_tag="TCM_024905" /product="Plastid-lipid associated protein PAP / fibrillin family protein" /inference="alignment:exonerate-protein:2:frave:gene22639" /inference="similar to AA sequence:Phytozome:POPTR_0016s04520.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03115t00002" CDS complement(join(29478873..29478968,29480137..29480189, 29481935..29482151,29483497..29483593,29483681..29483764, 29483844..29483965,29485798..29485902)) /locus_tag="TCM_024905" /codon_start=1 /product="Plastid-lipid associated protein PAP / fibrillin family protein" /protein_id="EOY09489.1" /db_xref="Phytozome:POPTR_0016s04520.1" /db_xref="TAIR:AT2G42130.4" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M2P7" /translation="MPCRAMVQQAVHGGAPATYAKEMERLSAKESLLLAFKDAGGFEA LVTGKTTDMQRIDVNERITGLERLNPTPRPTTSPFLEGRWNFEWFGFGSPGLSAAKII FERFPSTLAKLPKMDLLLKDGYAKVTAHFKLLNSIESKCILSTRVSIEGPLRMKEEYV EGILESPTVVEETIPEQLKSAYSQAVNTVQQLPVVIRDAVASGLRVPLSGTFQRLFMI SYLDEEILIIRDAAGIPEVLTRLDPPSSTMAETSPDYES" gene 29489602..29496894 /locus_tag="TCM_024908" /note="dbxref CacaoGD:Thecc1EG024908" mRNA join(29489602..29489708,29489861..29489990, 29490772..29490878,29490999..29491125,29491545..29491652, 29492452..29492567,29492671..29492754,29493605..29493673, 29493776..29493847,29493920..29494011,29494097..29494224, 29494743..29494844,29495819..29496894) /locus_tag="TCM_024908" /product="DNA polymerase delta small subunit isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s04510.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033498001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc966t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6723t2" mRNA join(29489608..29489708,29489861..29489990, 29490772..29490878,29490999..29491125,29491545..29491652, 29492452..29492567,29492671..29492754,29493605..29493673, 29493776..29493847,29493920..29494011,29494097..29494224, 29494743..29494844,29494970..29495037,29495819..29496504) /locus_tag="TCM_024908" /product="DNA polymerase delta small subunit isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s04510.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033498001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6723t2" CDS join(29489643..29489708,29489861..29489990, 29490772..29490878,29490999..29491125,29491545..29491652, 29492452..29492567,29492671..29492754,29493605..29493673, 29493776..29493847,29493920..29494011,29494097..29494224, 29494743..29494844,29495819..29495934) /locus_tag="TCM_024908" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="DNA polymerase delta small subunit isoform 3" /protein_id="EOY09492.1" /db_xref="Phytozome:GSVIVT01033498001" /db_xref="TAIR:AT2G42120.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O48520" /translation="MEAMEVDSQTQLQRKQSAYLSLDENFEIQNEVYRGQQYSQIYFA RLHMMRTLLYSLAPNWKSHLPVCTVLGLEEGKECIIVGTLYKHMKLKPCILDEYSKER STAPLVKPHNFMHQDDYLFLEDESGRVKLGGTMLSPSVYVTGVVIALHGKETTAGDFF VEDVLEAGLPPQIERPLQSREDKYVVFVSGLTVGSGASNPLQFQLLVDHITGHLGDEE EQGLAADIVHLVIAGNSVEISRGLLNGQNLASKDQSRLSEPIKELDILLTQIAASLPL DIMPGSNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNIRFLGTSGQNIN DLTEYSEAKDKIDFLERTLRWRHLAPTAPNTLGCYPFTDRDPFLIGSCPHVYFVGNQE KYETRLLKAQHEKSRMPCSNFWDSIQLIKWYGVLIPVSVVELLKVY" CDS join(29489643..29489708,29489861..29489990, 29490772..29490878,29490999..29491125,29491545..29491652, 29492452..29492567,29492671..29492754,29493605..29493673, 29493776..29493847,29493920..29494011,29494097..29494224, 29494743..29494844,29494970..29495037,29495819..29495878) /locus_tag="TCM_024908" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="DNA polymerase delta small subunit isoform 1" /protein_id="EOY09490.1" /db_xref="Phytozome:GSVIVT01033498001" /db_xref="TAIR:AT2G42120.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O48520" /translation="MEAMEVDSQTQLQRKQSAYLSLDENFEIQNEVYRGQQYSQIYFA RLHMMRTLLYSLAPNWKSHLPVCTVLGLEEGKECIIVGTLYKHMKLKPCILDEYSKER STAPLVKPHNFMHQDDYLFLEDESGRVKLGGTMLSPSVYVTGVVIALHGKETTAGDFF VEDVLEAGLPPQIERPLQSREDKYVVFVSGLTVGSGASNPLQFQLLVDHITGHLGDEE EQGLAADIVHLVIAGNSVEISRGLLNGQNLASKDQSRLSEPIKELDILLTQIAASLPL DIMPGSNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNIRFLGTSGQNIN DLTEYSEAKDKIDFLERTLRWRHLAPTAPNTLGCYPFTDRDPFLIGSCPHVYFVGNQE KYETRLLKGSEGQLVRLICIPRFCETGVAVVLNMRNLECHALTFGTQFSS" mRNA join(29489679..29489708,29489861..29489990, 29490772..29490878,29490999..29491125,29491545..29491652, 29492452..29492567,29492671..29492754,29493605..29493673, 29493776..29493847,29493920..29494011,29494097..29494224, 29494743..29494844,29494970..29495037,29495819..29495882, 29496525..29496894) /locus_tag="TCM_024908" /product="DNA polymerase delta small subunit isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s04510.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033498001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc966t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6723t2" CDS join(29489936..29489990,29490772..29490878, 29490999..29491125,29491545..29491652,29492452..29492567, 29492671..29492754,29493605..29493673,29493776..29493847, 29493920..29494011,29494097..29494224,29494743..29494844, 29494970..29495037,29495819..29495878) /locus_tag="TCM_024908" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="DNA polymerase delta small subunit isoform 2" /protein_id="EOY09491.1" /db_xref="Phytozome:GSVIVT01033498001" /db_xref="TAIR:AT2G42120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O48520" /translation="MMRTLLYSLAPNWKSHLPVCTVLGLEEGKECIIVGTLYKHMKLK PCILDEYSKERSTAPLVKPHNFMHQDDYLFLEDESGRVKLGGTMLSPSVYVTGVVIAL HGKETTAGDFFVEDVLEAGLPPQIERPLQSREDKYVVFVSGLTVGSGASNPLQFQLLV DHITGHLGDEEEQGLAADIVHLVIAGNSVEISRGLLNGQNLASKDQSRLSEPIKELDI LLTQIAASLPLDIMPGSNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNI RFLGTSGQNINDLTEYSEAKDKIDFLERTLRWRHLAPTAPNTLGCYPFTDRDPFLIGS CPHVYFVGNQEKYETRLLKGSEGQLVRLICIPRFCETGVAVVLNMRNLECHALTFGTQ FSS" gene 29498123..29499935 /locus_tag="TCM_024909" /note="dbxref CacaoGD:Thecc1EG024909" mRNA join(29498123..29498672,29499693..29499935) /locus_tag="TCM_024909" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s20690.1" /inference="similar to AA sequence:ricco:29613.m000362" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14185t2" CDS join(29498298..29498672,29499693..29499782) /locus_tag="TCM_024909" /note="dbxref ricco:29613.m000362" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09493.1" /db_xref="TAIR:AT2G42110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PDT8" /translation="MEAADANPSNVQVQHVTKKSSDELLRKFAELEGDDDDKGPARKE LRVVVKRRKRSTGTALRRREGDYSQCESPSGNGSTSLAERKWLLPPAVTRRSALLRQL GIGRSQIRAREIRNRSLFGTIEKTWRKTIEGASKVFMEKHYNRHRRLVNDVV" mobile_element 29499026..29499428 /note="source:CACAO_on_E225_scaffold_5 1 403" /mobile_element_type="transposon:TIR/hAT" gene 29500011..29506778 /locus_tag="TCM_024910" /note="dbxref CacaoGD:Thecc1EG024910" mRNA join(29500011..29500125,29501790..29502128, 29503363..29503727,29505674..29505910,29505989..29506778) /locus_tag="TCM_024910" /product="Phosphatase 2C family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma02g29170.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030891t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033496001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6772t1" CDS join(29501801..29502128,29503363..29503727, 29505674..29505910,29505989..29506225) /locus_tag="TCM_024910" /note="paralog of Thecc1EG030891t1" /codon_start=1 /product="Phosphatase 2C family protein" /protein_id="EOY09494.1" /db_xref="Phytozome:GSVIVT01033496001" /db_xref="TAIR:AT5G06750.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F2E607" /translation="MFSWLARIALACWRPVSRYARMNKDNNNSNNDEVEEDSSSLRDS LLWCRDLEKHSYGDFSFAVVQANEIIEDHSQVETGKDATFVGVYDGHGGPDASRFISD HLFQNLIRLARANGTISEDILRSAFSATEDGFLTLVRRTCGIKPLIAAIGSCCLVGVI WRGTLYIANLGDSRAVIGYLGRSNKIVAEQLTRDHNASIEEVRQELRSLHPDDSHIVV MKHGVWRIKGIIQVSRSIGDAYLKRPEFSLDPSFPRFHLSEPIRRPVLTAEPSMCTRV LQPSDKFLIFASDGLWEHLTNQQAVEIVYNYPRAGIAKRLIKTALNEAARKREMRYDD LKKVDKGIRRFFHDDITVVVIFIDHESLGAKMSVPEQSVRGFVDTTGPSNFNIL" mobile_element complement(29504337..29505059) /note="source:INTACT687_F13_scaffold_3-int 1298 2061" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(29507270..29522952) /locus_tag="TCM_024911" /note="dbxref CacaoGD:Thecc1EG024911" mRNA complement(join(29507270..29507424,29507826..29508439, 29508938..29509331,29509463..29509533,29510073..29510204, 29522647..29522952)) /locus_tag="TCM_024911" /product="Actin-11" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s20710.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041851t2" /inference="similar to AA sequence:Phytozome:POPTR_0016s04470.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.34 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6793t3" CDS complement(join(29507359..29507424,29507826..29508439, 29508938..29509331,29509463..29509522)) /locus_tag="TCM_024911" /note="paralog of Thecc1EG041851t2" /codon_start=1 /product="Actin-11" /protein_id="EOY09495.1" /db_xref="Phytozome:POPTR_0016s04470.1" /db_xref="TAIR:AT3G12110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P53496" /translation="MAENEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTG VMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEE HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDG VSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKL AYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGI HETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAP PERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF" gene complement(29509553..29520813) /locus_tag="TCM_024912" /note="dbxref CacaoGD:Thecc1EG024912" mRNA complement(join(29509553..29509587,29510073..29510204, 29519255..29519377,29519576..29519795,29519894..29520813)) /locus_tag="TCM_024912" /product="Ac-like transposase THELMA13" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_1436s00200.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008389t1" /inference="similar to AA sequence:frave:gene24499" /note="quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.19 coverage" mobile_element complement(29511665..29511752) /note="source:scaffold_10_CACTA_0127 7388 7474" /mobile_element_type="transposon:TIR/CACTA" mobile_element 29514511..29514571 /note="source:scaffold_9_CACTA_0946 6854 6912" /mobile_element_type="transposon:TIR/CACTA" mobile_element 29514586..29515178 /note="source:scaffold_4_CACTA_0511 12920 13528" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29514926..29515244) /note="source:CACAO_on_E69_scaffold_9 292 592" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(29516178..29516368) /note="source:CACAO_on_E69_scaffold_9 111 297" /mobile_element_type="transposon:TIR/hAT" mobile_element 29518595..29518947 /note="source:INTACT687_F13_scaffold_3-int 1296 1642" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 29518597..29519019 /note="source:scaffold_1_CACTA_0008 931 1353" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(29519268..29519377,29519576..29519795, 29519894..29520685)) /locus_tag="TCM_024912" /note="dbxref frave:gene24499; paralog of Thecc1EG008389t1" /codon_start=1 /product="Ac-like transposase THELMA13" /protein_id="EOY09496.1" /db_xref="TAIR:AT3G42170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6Y8E6" /translation="MRKQLLRGGKFFHIRCYAHILNLIVQDGLKEVDSAIQKGRESIK YVKGSQGRKQKFLECVSLVNLNAKRDLKQDVPTRWNSTFLMLESALYFRLGFSHLEIS DSNFKHSPSRDEWDRIEKLSKFLSVFYEITCVFSGTKYPTADLHFPSIFMARMILEEH MSGDDVYLKNMATQMFVKFKKYWSQFSLILTIAVIFDPRYKIQFMEWSYTKLYGSNSA EFKKVKDHLFALYDEYAVKVSNTPSSLNDTSFDGKKVQKGKNKFLKEFDNFQREFGTT KNKSQLEQYLDEQRIETTIELDILQFWKKNQFRYPEVSAMARDILAIPVSTVASESAF SVGAYVKTDMNNLTADVINLEIGKEEMSLAECSNTIDVD" mobile_element 29522922..29523287 /note="source:INTACT687_F13_scaffold_3-int 1638 2052" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 29524055..29524526 /note="source:CACAO_on_E732_scaffold_9 3464 3931" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 29524572..29524667 /note="source:INTACT446_F218_scaffold_9-int 7471 7568" /mobile_element_type="retrotransposon:LTR/Unclassified" gene 29524637..29528951 /locus_tag="TCM_024913" /note="dbxref CacaoGD:Thecc1EG024913" mRNA join(29524637..29524949,29526078..29526155, 29527001..29527130,29527528..29527831,29527996..29528050, 29528407..29528951) /locus_tag="TCM_024913" /product="DNAJ heat shock N-terminal domain-containing protein, putative" /inference="alignment:exonerate- protein:2:ricco:29613.m000366" /inference="similar to AA sequence:ricco:29613.m000366" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14174t1" CDS join(29524830..29524949,29526078..29526155, 29527001..29527130,29527528..29527831,29527996..29528050, 29528407..29528481) /locus_tag="TCM_024913" /note="dbxref ricco:29613.m000366" /codon_start=1 /product="DNAJ heat shock N-terminal domain-containing protein, putative" /protein_id="EOY09497.1" /db_xref="TAIR:AT2G42080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P93739" /translation="MDRAIKAAILNQQSNYLFLRAAFFHSTPVLEHKRRTYWQFGKRP RRLRGKQELLRNVSAYADFLFESWKDEFGEEDPSSSRGPSWFKKQYSKGSRKDWPGNR GFQYRGRRPFDFCEDDDDDIETIFRSAFGGNRFFYWSFINEEHHQWRSSSRYSNNYEK SWNWRYRFNEDSDSSTESGSSESSDQDTAADRRALGLSASGPLTLEDVKNAYRISALK WHPDRHHGSSKAVAEEKFKLCNSAYQSLCDKLAMN" gene 29529466..29534047 /locus_tag="TCM_024914" /note="dbxref CacaoGD:Thecc1EG024914" mRNA join(29529466..29529895,29531068..29531199, 29532079..29532155,29532358..29532493,29532638..29532729, 29532848..29533206) /locus_tag="TCM_024914" /product="Nudix hydrolase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s20720.1" /inference="similar to AA sequence:ricco:29613.m000368" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:PASA:2:TSA:puevd3b024096t1a2; inference alignment:Newbler:10:TSA:cgbaB_g08021t00001" mRNA join(29529504..29529895,29531068..29531199, 29532079..29532155,29532358..29532493,29532589..29532729, 29532848..29532906,29533227..29533330,29533704..29534047) /locus_tag="TCM_024914" /product="Nudix hydrolase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s20720.1" /inference="similar to AA sequence:ricco:29613.m000368" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08021t00001; inference alignment:Newbler:10:TSA:cgbaB_g08021t00001" CDS join(29529629..29529895,29531068..29531199, 29532079..29532155,29532358..29532493,29532589..29532729, 29532848..29532906,29533227..29533287) /locus_tag="TCM_024914" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29613.m000368" /codon_start=1 /product="Nudix hydrolase isoform 1" /protein_id="EOY09498.1" /db_xref="TAIR:AT2G42070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P93740" /translation="MLKAIQILGCSSEFISQRLKKPHSGNGCSLISSKGSDTSTSLFL HPFWTPKTLSSKLIRMFSTQSESNSNAPSSSSSSSSSSSVAVHSAGNVHKIKFCQWCG GPAKHEIPDGEEKIRAICTLCGKIAYQNPKMVVGCLIEHEKKILLCKRNIEPSYGLWT LPAGYLEIGESAAEGAVRETWEEAGAEAEVVSPFAQLDIPLIGQTYIIFLAKLKKPHF SPGPESSECCLFELDNIPFDSLAFSSIFVTLNLYIEDVKSGKIKFHYGTINKRLGTGP SDIRAFTLDYHWQA" CDS join(29529629..29529895,29531068..29531199, 29532079..29532155,29532358..29532493,29532638..29532724) /locus_tag="TCM_024914" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29613.m000368" /codon_start=1 /product="Nudix hydrolase isoform 2" /protein_id="EOY09499.1" /db_xref="TAIR:AT2G42070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P93740" /translation="MLKAIQILGCSSEFISQRLKKPHSGNGCSLISSKGSDTSTSLFL HPFWTPKTLSSKLIRMFSTQSESNSNAPSSSSSSSSSSSVAVHSAGNVHKIKFCQWCG GPAKHEIPDGEEKIRAICTLCGKIAYQNPKMVVGCLIEHEKKILLCKRNIEPSYGLWT LPAGYLEIGESAAEGAVRETWEEAGAEAEVVSPFAQLDIPLIGQDQNHPSAVSLNWTI YLLILWHFLQFLLR" mobile_element complement(29535307..29545884) /note="source:INTACT384F_F20_scaffold_3-int 2561 15802" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(29542845..29545293) /locus_tag="TCM_024917" /note="dbxref CacaoGD:Thecc1EG024917" mRNA complement(join(29542845..29543529,29545087..29545293)) /locus_tag="TCM_024917" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003332t1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.58 coverage" CDS complement(join(29543079..29543529,29545087..29545247)) /locus_tag="TCM_024917" /note="paralog of Thecc1EG003332t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09500.1" /translation="MMGRGVWGNIFSLSQTLEATGYITIMFSSGSRKEKSTGSITHEG TTPKSTQASREWSLYFDGSSNNFRGGAEIVPIPPGRKDNSLIQSSELTVSHLSRSHIS LEEKGLCVLEVSSKDGKSLISGLELNTLELGKEPISLAFKLDFPCTNNQAEYEALVLG LYAIATIEVNNLCIHQDSNLIVKQTNGEFSLKELMLASYRTLV" gene complement(29543517..29544652) /locus_tag="TCM_024918" /note="dbxref CacaoGD:Thecc1EG024918" mRNA complement(29543517..29544652) /locus_tag="TCM_024918" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040230t1" /inference="similar to AA sequence:frave:gene14044" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.44 coverage" CDS complement(29543919..29544443) /locus_tag="TCM_024918" /note="dbxref frave:gene14044; paralog of Thecc1EG040230t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09501.1" /translation="MMFPDMMHDCMEDYMDDIVVKSKKASDHFEDLKRIFERCRKYIL RMNPLKCAFGVTVGKFLGFVVHRKGIDVDLAKIKAIQSMPSPVNQRQLKSLLGKVSYI RRFILALGEIIMPFQVLLKKCVPFTWGEPQQQAFKKIKKILTSLTTMIMPIKEESMML YFTSTPYLIGALLV" mobile_element 29545885..29547745 /note="source:CACAO_M_E44078_F4_scaffold_5 1 1861" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(29547746..29548944) /note="source:INTACT384F_F20_scaffold_3-int 1362 2565" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(29550017..29552998) /locus_tag="TCM_024920" /note="dbxref CacaoGD:Thecc1EG024920" mRNA complement(join(29550017..29550388,29551080..29551370, 29551659..29552541)) /locus_tag="TCM_024920" /product="Riboflavin synthase alpha chain, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400031981" /inference="similar to AA sequence:ricco:29983.m003196" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1333t3" mRNA complement(join(29550060..29550388,29551659..29552779)) /locus_tag="TCM_024920" /product="Riboflavin synthase alpha chain, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400031981" /inference="similar to AA sequence:ricco:29983.m003196" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6727t1; alternateUTRof:Thecc1EG024920t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1333t3" mRNA complement(join(29551471..29551563,29551659..29552998)) /locus_tag="TCM_024920" /product="Riboflavin synthase alpha chain, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400031981" /inference="similar to AA sequence:ricco:29983.m003196" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1334t1; alternateUTRof:Thecc1EG024920t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1333t3" CDS complement(29551678..29552517) /locus_tag="TCM_024920" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29983.m003196" /codon_start=1 /product="Riboflavin synthase alpha chain, putative isoform 1" /protein_id="EOY09502.1" /db_xref="TAIR:AT2G20690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RW01" /translation="MALSTSMNSFSTIPKASPRNPIIFNLLRTPSLKPHLKLNPISKP SSLSLFYQPSNLRPKTQCFQSTTIRSLFTGIVEEMGEIKQLGMADHGGFDLKIRAKTI VEDVKLGDSIAVNGTCLTVTDFDTRLGEFMVGLAPETLRKTSLSELEPGSLVNLERAI QPTGRMGGHFVQGHVDGTGEIVGKEVEGDSLWIKVKVDKSLLKYVVPKGFIAVDGTSL TVVDVFEEELCFNFMLVAYTQQKVVIPLKEVGQKVNLEVDILGKYVERLLSSGFVDSI KGS" CDS complement(29551678..29552517) /locus_tag="TCM_024920" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29983.m003196" /codon_start=1 /product="Riboflavin synthase alpha chain, putative isoform 1" /protein_id="EOY09503.1" /db_xref="TAIR:AT2G20690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RW01" /translation="MALSTSMNSFSTIPKASPRNPIIFNLLRTPSLKPHLKLNPISKP SSLSLFYQPSNLRPKTQCFQSTTIRSLFTGIVEEMGEIKQLGMADHGGFDLKIRAKTI VEDVKLGDSIAVNGTCLTVTDFDTRLGEFMVGLAPETLRKTSLSELEPGSLVNLERAI QPTGRMGGHFVQGHVDGTGEIVGKEVEGDSLWIKVKVDKSLLKYVVPKGFIAVDGTSL TVVDVFEEELCFNFMLVAYTQQKVVIPLKEVGQKVNLEVDILGKYVERLLSSGFVDSI KGS" CDS complement(29551678..29552517) /locus_tag="TCM_024920" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29983.m003196" /codon_start=1 /product="Riboflavin synthase alpha chain, putative isoform 1" /protein_id="EOY09504.1" /db_xref="TAIR:AT2G20690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RW01" /translation="MALSTSMNSFSTIPKASPRNPIIFNLLRTPSLKPHLKLNPISKP SSLSLFYQPSNLRPKTQCFQSTTIRSLFTGIVEEMGEIKQLGMADHGGFDLKIRAKTI VEDVKLGDSIAVNGTCLTVTDFDTRLGEFMVGLAPETLRKTSLSELEPGSLVNLERAI QPTGRMGGHFVQGHVDGTGEIVGKEVEGDSLWIKVKVDKSLLKYVVPKGFIAVDGTSL TVVDVFEEELCFNFMLVAYTQQKVVIPLKEVGQKVNLEVDILGKYVERLLSSGFVDSI KGS" gene 29556840..29562697 /locus_tag="TCM_024921" /note="dbxref CacaoGD:Thecc1EG024921" mRNA join(29556840..29557816,29558481..29558589, 29559089..29559128,29560456..29560532,29560654..29560742, 29560819..29560847,29561346..29561415,29561518..29561587, 29561679..29561717,29561864..29562014,29562112..29562201, 29562296..29562697) /locus_tag="TCM_024921" /product="Cation efflux family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s04430.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s04430.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Newbler:10:TSA:cgbaL_g05087t00001" CDS join(29557372..29557816,29558481..29558589, 29559089..29559128,29560456..29560532,29560654..29560742, 29560819..29560847,29561346..29561415,29561518..29561587, 29561679..29561717,29561864..29562014,29562112..29562201, 29562296..29562397) /locus_tag="TCM_024921" /codon_start=1 /product="Cation efflux family protein" /protein_id="EOY09505.1" /db_xref="Phytozome:POPTR_0016s04430.1" /db_xref="TAIR:AT3G12100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6ICY4" /translation="MEREKSFKYYSQEPDSPHTWNADFGFTNASDRRYAFSRQSSFHQ SQKDPQTPRISNFSNDSMKPFLSRTASSIDIPPGFYSFDEVKEGLLEAKRSAVAEKLS VLDSFLWIFRVIRTGNRQMKRLLIMISLNVAYSTAEFAIGLFTGRIGLVSDAFHLTFG CGLLTFSLFAMATSRRKPDHVYTYGYQRLEVLSAFTNALFLLFMSFSLAVEALHAFIQ DESEHKHYLIVSAVTNLLVNLIGVWFFRNYARINLVMRFMDGPKNCATDAAMLCLNHG NLAMLCLICLVYRKPEDMSYHSVCLHVLADSIRSAGLILASWFLSLGVNNAEVLCLGL VSGAVFMLVLPLFKATAGVLLQTAPPNIPSSALSKYWRQITSHEDVTEVSQARFWELV PGHVVGSISLQMKKEMDDRPILEYVHSLYHELGIHDLTVQTDYL" mobile_element 29559910..29559962 /note="source:CACAO_M_E52882_F369_scaffold_8 1438 1490" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(29563143..29573892) /locus_tag="TCM_024922" /note="dbxref CacaoGD:Thecc1EG024922" mRNA complement(join(29563143..29565590,29573746..29573892)) /locus_tag="TCM_024922" /product="Concanavalin A-like lectin protein kinase family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033490001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024924t1" /inference="similar to AA sequence:frave:gene00461" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6805t2" CDS complement(29563376..29565352) /locus_tag="TCM_024922" /note="dbxref frave:gene00461; paralog of Thecc1EG024924t1" /codon_start=1 /product="Concanavalin A-like lectin protein kinase family protein, putative" /protein_id="EOY09506.1" /db_xref="TAIR:AT5G06740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FG33" /translation="MATSPVVKLLLVLIALFGAACTNVQCFYFNFPDFQDEDRKDLDL SENSTIFRDAMQVTPDLNGDITNTPGRAYYGKKFRLWSKKKGIASFNSTFVINISNKD SPEVGEGLAFVLTADKSVPGNSYGQWLGMVNASTNGTSQARIVGVEFDTRKSYEEDLD DNHVGLDINSCYSILQESLSSYNINLSVGVDVRVVVQYDGKNLTVFISKGNETVNATS PAFSVPLDLSAYLPESVYVGFSASTGNFTQLNCVRAWEFQGLDVDEDSNLLWVWIAVP VISLALISGLAFYMYWSGRFKKDDLEGAYPNIEDHIKSSTAPRRFRLKELKRATGNFN HKNKLGKGGFGTVYKGIWKEKEVAVKRVSKKSNQGSQEFIAEVTTIGNLNHKNLVKLI GWCYENRELLLVYEYMPNGSLDKFIFYDEKAGIEESNQPTLSWETRLIIIKGVAEALD YLHNGCEKRVLHRDIKSSNIMLDSEFNARLGDFGLARTIQQREKTHHSTIEIAGTPGY MAPETFLISRATVETDVYSYGVLLLEVVCGRKPGNQSELNNYNNSIVNWLWEFYRRGR ITDAVDSKLDGDFVDKEVESALILGLACCHPNPHYRPSMRTVLAVLTGEADPPQVPHE RPSFVWPAMPPVFSQSDYSLTGSQFSTISDLSGR" mobile_element complement(29566082..29566202) /note="source:scaffold_5_CACTA_0580 5414 5537" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29566860..29567209) /note="source:scaffold_1_CACTA_0008 6608 6964" /mobile_element_type="transposon:TIR/CACTA" mobile_element 29566929..29568220 /note="source:scaffold_2_CACTA_0244 12399 13469" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29567210..29567266) /note="source:CACAO_Mutator_E1888_scaffold_9 7434 7799" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(29567267..29567490) /note="source:CACAO_M_E4753_F17_scaffold_2 7191 7806" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(29567446..29568367) /note="source:INTACT135F_F90_scaffold_2-int 12869 13768" /mobile_element_type="retrotransposon:LTR/Copia" gene 29573992..29576139 /locus_tag="TCM_024923" /note="dbxref CacaoGD:Thecc1EG024923" mRNA join(29573992..29574570,29574694..29574782, 29575470..29575651,29575761..29576139) /locus_tag="TCM_024923" /product="Ribosomal protein L6 family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033532001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024858t1" /inference="similar to AA sequence:frave:gene00518" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14175t1" CDS join(29574314..29574570,29574694..29574782, 29575470..29575651,29575761..29575916) /locus_tag="TCM_024923" /note="dbxref frave:gene00518; paralog of Thecc1EG024858t1" /codon_start=1 /product="Ribosomal protein L6 family protein" /protein_id="EOY09507.1" /db_xref="TAIR:AT1G74050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GFS1" /translation="MAAKRKTPLKTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGV LPRHDPKPKAAAAPEKLPKFYPADDVKKPLLNKRKPKPTKLRDSVDFVGWRFMGKRVV FLKQLTSGLLLVTGPFKINGVPLRRVNQSYVIATSTKVDISGVNEEKFDDKYFAKEVE KKKKKGEGEFFEAEKKDKRKLPDDKKEDQKAVDASLIKSIEGVPDLKAYLAARFSLKS GMKPHELVF" gene complement(29576233..29582932) /locus_tag="TCM_024924" /note="dbxref CacaoGD:Thecc1EG024924" mRNA complement(join(29576233..29576522,29577484..29579752, 29582635..29582932)) /locus_tag="TCM_024924" /product="Concanavalin A-like lectin protein kinase family protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024922t1" /inference="similar to AA sequence:TAIR:AT5G06740.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.19 coverage" CDS complement(29577785..29579737) /locus_tag="TCM_024924" /note="paralog of Thecc1EG024922t1" /codon_start=1 /product="Concanavalin A-like lectin protein kinase family protein" /protein_id="EOY09508.1" /db_xref="TAIR:AT5G06740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FG33" /translation="MCSSLLSYFLIILAASLSQALIRVSCLEFNFSSFQKEDESLLIL SRNSYIVNGAIQVTPDFIGAPIVNFSGRALYKKPFGLWKDNGTTASFNTTFVLNIQKR TSPGGEGLAFVITTNSGLPESSEGKWLGIVNSTLNGSSQARVVAVEFDTRKSYAEDLD GNHIGLNINSIDSIEQVSLTSYGVNISGGEDLRVHLQYDGKNLTVFVGDNKTLVLSRP LNLSAYLPQKVFVGFSASTSNETELNCVKSWAFFGTDIGGGRNLLWVWITVPVASLAL LIGVAFYLCWRRVPTEGDLEGAQGNIEDEIKRSNMAPRKFRLKELKLATSNFSPKYKL GKGGFGTVYKGSWKSKDVAVKRVSKKSHQGKQEFIAEVTTIGNLNHKNLVKLIGWCYE SRELLLVYEYMPNGSLDKFIFCDDKASMEESTLSWEQRLSIIKGVAQALEYLHNGCQK RVLHRDIKASNIMLDSKFNAKLGDFGLARTIQEKEKTHHSTIEIAGTPGYMAPETFLI SRATVETDVYSFGVLVLEVVCGRKPGNQSEKNNYNNSIVNWLWEFYRKGRITDAADSR MDGNFDEKEVECALILGLACCHPNPHYRPSMKTVLQVLTGEADPPEVPQERPSFVWPA MPPSFSGIDNSLTGSQLTPFTDLTGR" mobile_element complement(29580804..29580914) /note="source:scaffold_5_CACTA_0614 284 407" /mobile_element_type="transposon:TIR/CACTA" gene complement(29583008..29590851) /locus_tag="TCM_024925" /note="dbxref CacaoGD:Thecc1EG024925" mRNA complement(join(29583008..29583867,29584162..29584205, 29584289..29584376,29584472..29584581,29585114..29585215, 29586541..29586615,29586706..29586839,29587137..29587374, 29588065..29588273,29588608..29588682,29589993..29590851)) /locus_tag="TCM_024925" /product="Dihydrodipicolinate reductase 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400049804.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001303t2" /inference="similar to AA sequence:Phytozome:GSVIVT01038260001" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc59t1" CDS complement(join(29583831..29583867,29584162..29584205, 29584289..29584376,29584472..29584581,29585114..29585215, 29586541..29586615,29586706..29586839,29587137..29587374, 29588065..29588273,29588608..29588682,29589993..29590704)) /locus_tag="TCM_024925" /note="paralog of Thecc1EG001303t2" /codon_start=1 /product="Dihydrodipicolinate reductase 2" /protein_id="EOY09509.1" /db_xref="Phytozome:GSVIVT01038260001" /db_xref="TAIR:AT3G59890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LB01" /translation="MPNGSLDRFIFGNTIPSNADTTLKWETRHNIICGVARALDYLHN GCEKRVIHRDIKASNIMLDSDFNARLGDFGLARTVQLNEKTHHSTKEIAGTPGYMSPE SFHTGKATVETDVYAFGVLILEVVSGRKPGHQNEQNNYYRSIVEWVWEHHRMEQITDV IYLRLNKDFHEDQARCILMLGLACCHPNPFERPSMRTALQVLTGEVAAPAVPTEMPAF MWPAAPPVIREEMDNSITGAAATSVLPGGPSSSALQFVALSLALFKMASLLKVSANGF RSEKLPSLSKGNRRQGIVAKKAAFGSIRAAMSLSMSTTAVQHNQKSTSLDLAIPIMVN SCTGKMGKAVIKAADSAGLHIVPVSFGAEKESGQTIEMCGKEILVHGPSERESILASV FHEYPNLVMVDYSVPAAVNDNAELYSKVGVPFVMGTTGGDRDRLYKTVEDSNVYAVIS PQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVMESHQASKLDTSGTAKAVISCFQKLG VSFDMDQIQMIRDPKQQIEMVGVPEEHLAGHAFHLYCLTSPDETVSFEFQHNVCGRSI YAEGTVDAVLFLAKKVRFEGITATCSANNRFSQRPTSASTI" gene complement(29595400..29596176) /locus_tag="TCM_024926" /note="dbxref CacaoGD:Thecc1EG024926" mRNA complement(join(29595400..29595497,29595612..29596176)) /locus_tag="TCM_024926" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g10168t00001" CDS complement(29595988..29596149) /locus_tag="TCM_024926" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09510.1" /translation="MGWGSSPSDSLKISHEFNCYSLASECTSRSEERILGPSYSRNQC KFFHHKICP" mobile_element 29597188..29597363 /note="source:CACAO_on_E205_scaffold_7 1 178" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(29597366..29597713) /note="source:CACAO_on_E205_scaffold_7 6975 7340" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(29597710..29598853) /note="source:CACAO_on_E205_scaffold_7 166 1329" /mobile_element_type="transposon:TIR/Mutator" mobile_element 29598850..29600154 /note="source:CACAO_on_E205_scaffold_7 1 1320" /mobile_element_type="transposon:TIR/Mutator" mobile_element 29600161..29601095 /note="source:CACAO_on_E205_scaffold_7 6400 7340" /mobile_element_type="transposon:TIR/Mutator" gene complement(29602071..29603170) /locus_tag="TCM_024927" /note="dbxref CacaoGD:Thecc1EG024927" mRNA complement(29602071..29603170) /locus_tag="TCM_024927" /product="Cysteine/Histidine-rich C1 domain family protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT2G42060.1" /inference="similar to AA sequence:TAIR:AT2G42060.1" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS complement(29602212..29602970) /locus_tag="TCM_024927" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein, putative" /protein_id="EOY09511.1" /db_xref="TAIR:AT2G42060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HLI3" /translation="MEYKHFGHQHNLRIYQLQPGDHEYRCSGCDSFCSGSAYGCLGCK FFLHEQCGNAGRSLQHPSHPFHHLTLVPYTTHLAGTFACNACGDTGNAFSYCCPLCDV DLHVPCAFLPQIIKHESHLHSLSLTYSLPFPNVSSRFCDICHKLLDCKYWSYNCFACN FAAHALCAAKEMRRETCHGEHVSSSGTTAPQSNEIHLKEDAASGTTQDQPEPAEIQDP TLQAMCELERLKLQMQMTNELAKMMASFNLSSLI" mobile_element 29603628..29604018 /note="source:INTACT639F_F363_scaffold_5-int 7469 7879" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(29604011..29604620) /note="source:CACAO_on_E683_scaffold_9 1203 1763" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 29604837..29607194 /locus_tag="TCM_024928" /note="dbxref CacaoGD:Thecc1EG024928" mRNA join(29604837..29606577,29606721..29606737, 29606841..29607194) /locus_tag="TCM_024928" /product="Cysteine/Histidine-rich C1 domain family protein, putative" /inference="alignment:exonerate-protein:2:frave:gene00457" /inference="similar to AA sequence:ricco:29613.m000374" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.38 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6752t1" CDS join(29605294..29606577,29606721..29606737, 29606841..29606976) /locus_tag="TCM_024928" /note="dbxref ricco:29613.m000374" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein, putative" /protein_id="EOY09512.1" /db_xref="TAIR:AT2G27660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9II95" /translation="MKALQEEHMYHHFSHHHPMVRTNLTSSGNVTCSGCKLDILPAKG HYHCKTCPFYLHQVCYNMPRKTRHPGHPAHVLTLHIMPSFGEETFKCEACGHHINGFY YYCAECSTCYHILCSALPLSVAITSHLHTLKLEFSPPYDLRCDICKEPASYKGWLYRC QICEFDTHLACAISNQRTQSFRHPTAPLPNPLTRQIMYSSASLMETKQREDYVNEGTE LKQLVSQGVARNIRENRTQENFLKTVVGWDERLHSPKRKLTTRNGQDENFGSSHKPDI AGTSPKPKVQAQETDQTSLVSGDLSTAPSYQFSDGCFSIDLAGSYSSFDHTTLARKEP KLSDTSPLQKVKETISDGNDIMIERITSNFELTKQETIYAKKESFDFCNPDSRMKEGF LTGDGTHSGGQRNRKKMSNESRCVSGIRDQSSKSEQIKFLQKEDHGVLLVGSSSNIAF LLSMRKVLQFSVMEEIEKKEEGNCVQDC" gene 29607847..29610780 /locus_tag="TCM_024929" /note="dbxref CacaoGD:Thecc1EG024929" mRNA join(29607847..29608539,29608659..29609498, 29609889..29610780) /locus_tag="TCM_024929" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.98 coverage" CDS join(29608102..29608539,29608659..29609498, 29609889..29609918) /locus_tag="TCM_024929" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09513.1" /translation="METQKGRLDMDPVIQHFSHLHPLKLQSFQPQTTNTLICASCKLE ASGWFYFCSTCNYCLHKTCSRMPQNKKKEHQVDPKRTLVLLSIPVMPLVPSSAMPVGN LAKVFATTVKIVSLIYTLFASISPHQSILVPTITPWNFVSAPPIAATEIQQRKQRILC PTDSANTQFQPVREIQTQQTHEEQLQCQANGACSQLQSVTGFQQTQQDLLLCHNIIAS THSQPVTGIQHTQEKTLHHSSSSNIQIQPVRAIQVQQTHQKQLLYHADRANIYTQPVT CIQLKQQQPQLLKSQSYPPQSSKFMTDLPYSGSAFHHVSQTVITIPQQQICVPYVHNS NPIPEAGSSNWKQPYKVNDYTASMPTLAVHQHVPQPIHQMNGSTTSVPTFAAVPQYGQ PPNTTKAGNNLMGHVVEELVDGFIPQARGAIFQSRFSSHNLIL" gene complement(29611403..29614717) /locus_tag="TCM_024930" /note="dbxref CacaoGD:Thecc1EG024930" mRNA complement(29611403..29614717) /locus_tag="TCM_024930" /product="Intron maturase, type II family protein" /inference="alignment:exonerate- protein:2:ricco:29693.m002023" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015796t4" /inference="similar to AA sequence:ricco:29693.m002023" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6763t1" CDS complement(29612363..29614435) /locus_tag="TCM_024930" /note="dbxref ricco:29693.m002023; paralog of Thecc1EG015796t4" /codon_start=1 /product="Intron maturase, type II family protein" /protein_id="EOY09514.1" /db_xref="TAIR:AT1G30010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HLR5" /translation="MLLGKTIKHLPSISINKSFLRFSSSLSVLSAHDPTSDSDPHALL KKDPIDICLSIWVKSFSSPPTATFPNLTGFLSKFDLWVLAYQRSCAHVTGTFPPRNAI HSQTLHSLLSLQSAVVHGRRFKWNNKTHQLIRSPNDKPSTSLISKRKLQAMLQSPDPC FQDCVVQEVLLMVLEPIFEPRFSSKSHAFRPGRSAHSVIRTIRSNFAGYLWFLRGDLS ELFDNVDVNVIMGCLEKVVKDKKVLNLIKSGLNQPVKKRLKIDDDGGSGGGGDLKSKR MKKRKATKKKILNENEPKPDPYWLRTFFDFAPEEAAKVPSYGCCGILSPLLANVCLNE LDQVMEEKIVKFFRPSKHDSIWKDTINDGCHNPSWPEFVPSSGREKTRKMDYIRHGSH FFIGIRGPREDAVQIRKEIIEFCESEFGIRLDNSKVEIEHISRGIQFLDHIICRRVIH PTLRYTASGGNIVSQKGVGTLLSVTASLQQCIRQFRRLHFVKGDKDPEPLPCTPMLYS SQAHTNSQMNKFLETMADWYRYADNRKKVVGFCAYVIRSSLAKLYAARYRLKSRAKVY RIASRDLSRPLRESSNNSAPEYSDLLRMGLVDAIEGVQFSHMSLIPSCDYTPFPRNWV PDHEQLLHEYIRLQDPKFFCNLHRSIKREGLSLPQDELSGIVWDYKTLGIWRYRSNTG QETKEGSE" mobile_element complement(29617563..29617630) /note="source:scaffold_1_CACTA_0032 2542 2609" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29619059..29620081) /note="source:CACAO_Again_on_S_E187_scaffold_5 1 1002" /mobile_element_type="transposon:TIR/hAT" gene complement(29620050..29621571) /locus_tag="TCM_024931" /note="dbxref CacaoGD:Thecc1EG024931" mRNA complement(29620050..29621571) /locus_tag="TCM_024931" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022315t1" /inference="similar to AA sequence:Phytozome:GSVIVT01004252001" /note="quality class is weak-utrpoor, express is none, homology is paralog medium, intron is none, protein is utrpoor_complete" CDS complement(29620938..29621438) /locus_tag="TCM_024931" /note="paralog of Thecc1EG022315t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09515.1" /db_xref="Phytozome:GSVIVT01004252001" /translation="MWKAKTLSMGGRLTLLRLVLSSLLLFYMSLFRMPKKVKCEIEKI QKRFLWGGLNLVCRLHCVSWGSICNYHELGGLGLVDIEVKNNAVLNKWLWRYENEPKG LWRCIVAEKLSLDQKSLTPNLQNNVRIFEIWRNIVKPLYGGDTFSSYIIEGLGVSLGS ESRIKF" mobile_element 29623505..29623564 /note="source:scaffold_10_CACTA_0140 6102 6159" /mobile_element_type="transposon:TIR/CACTA" gene complement(29628508..29630915) /locus_tag="TCM_024932" /note="dbxref CacaoGD:Thecc1EG024932" mRNA complement(join(29628508..29629421,29629524..29629591, 29630073..29630143,29630372..29630915)) /locus_tag="TCM_024932" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s05850.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05850.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14187t3" CDS complement(join(29628724..29629421,29629524..29629591, 29630073..29630143,29630372..29630665)) /locus_tag="TCM_024932" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09516.1" /db_xref="Phytozome:POPTR_0016s05850.1" /translation="MRIRKRQVPLPFSSISPVPLPSDPNFNRPPVVQLPLQQQQPPLP TPRFDLRPSSDRPNHPIGQLQTQGRDSSAFPAGTTTHGEDNNNNKKPKKKEDYLVLKQ GGGGEEEERGGEGEKSNDTREKSVLGAELGSGFPPQSSSSHQALGRWGEGEKAFPLKK RRGSFERRGNYDDDTIMEKDNNKKVTNINKMKTKMNKKFVQQQNDNHEQEEKEIKDST ASVDSNPSSAKKRGRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSM TSVRSRSLAGSNAAKKEEQQPNNDHHQPLSNSSPSQQLQAKQTKCELLGESGENGNEQ EEDQKPLMMTKKKVKLGMVKARSISSLLGQNDNAIAVADDNN" gene 29634918..29637914 /locus_tag="TCM_024934" /note="dbxref CacaoGD:Thecc1EG024934" mRNA join(29634918..29635498,29636134..29636236, 29637131..29637251,29637373..29637484,29637598..29637914) /locus_tag="TCM_024934" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.55 coverage" CDS join(29635360..29635498,29636134..29636236, 29637131..29637251,29637373..29637484,29637598..29637782) /locus_tag="TCM_024934" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09517.1" /translation="MKEELAALPHLYSHPTTGPGKEKEVIVAPMAKMNNGLHIMQKEK KKTVAPCFGHEETVKKRRSGWGQVGKGQARVAELALRSAIARIQCWNPPSGRRRNGKP RVLTSSIVTPKKNFGRPLKTYWPCGSAYKILVKVLASKLRMVIGTVTGEHQFAFVRAI FSFSDGIEDSNFAESLAVNVGISLFLSTHCSIQQSLVVEGDSKNMPYAGLLTMELHLD V" gene 29639867..29641559 /locus_tag="TCM_024935" /note="dbxref CacaoGD:Thecc1EG024935" mRNA join(29639867..29640096,29640638..29641559) /locus_tag="TCM_024935" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.16 coverage" CDS join(29639987..29640096,29640638..29640770) /locus_tag="TCM_024935" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09518.1" /translation="MLTLDKMKGIEIRRHTMEWNPSLARKGARLSNKWIKSLPQYSWL AGYKSETVTLFVNQDSVLKPDHLSYFILALPAMRFI" gene 29642537..29644495 /locus_tag="TCM_024936" /note="dbxref CacaoGD:Thecc1EG024936" mRNA join(29642537..29642792,29642907..29643098, 29643265..29643430,29643644..29644495) /locus_tag="TCM_024936" /product="Peroxidase 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0149s00200.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040312t1" /inference="similar to AA sequence:ricco:29613.m000380" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g04856t00001" CDS join(29642574..29642792,29642907..29643098, 29643265..29643430,29643644..29644062) /locus_tag="TCM_024936" /note="dbxref ricco:29613.m000380; paralog of Thecc1EG040312t1" /codon_start=1 /product="Peroxidase 2" /protein_id="EOY09519.1" /db_xref="TAIR:AT5G06720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FG34" /translation="MSSSIANSSFILSTILLTFLVYQSKAQLSATFYATTCPNASSIV RSVIQQALQSDIRIGASLIRLHFHDCFVDGCDASILLDNSANIQSEKDAAPNTNSTRG FNVVDNIKTALENSCPGIVSCADVLALAAESSVSLQGGPSWSVLLGRRDSLTANQAGA NSSIPSPFEGLSNITSKFSAVGLNTNDLVALSGAHTFGRAQCRLFSNRLYNFSGTGNP DPTLDSSYLTTLRQICPQSGSGFNVANLDPTTPDTFDSNYFTNLQNNQGLLQSDQELF STAGAPTISIVNTFSGNQTAFFQSFAQSMINMGNISPLTGSSGEIRADCKKVNGS" gene 29645722..29648134 /locus_tag="TCM_024937" /note="dbxref CacaoGD:Thecc1EG024937" mRNA join(29645722..29645929,29646275..29648134) /locus_tag="TCM_024937" /product="RING/U-box superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g30190.1" /inference="similar to AA sequence:ricco:29613.m000381" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:PASA:2:TSA:puevd3b024119t1a2; alternateUTRof:Thecc1EG024937t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc861t9" mRNA join(29645722..29645912,29646275..29648134) /locus_tag="TCM_024937" /product="RING/U-box superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g30190.1" /inference="similar to AA sequence:ricco:29613.m000381" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc861t9" mRNA join(29645722..29645912,29646230..29648068) /locus_tag="TCM_024937" /product="RING/U-box superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g30190.1" /inference="similar to AA sequence:ricco:29613.m000381" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc936t1; alternateUTRof:Thecc1EG024937t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc861t9" CDS 29646331..29647587 /locus_tag="TCM_024937" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29613.m000381" /codon_start=1 /product="RING/U-box superfamily protein isoform 1" /protein_id="EOY09520.1" /db_xref="TAIR:AT3G58030.4" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HLI0" /translation="MAEETTDTMNLDLNLGPAPETGSGSVSNESLNWDDLVDNPFDRI REAVRRRRWRWQQVEIPTATQNLSVELDQFMGNSGNVSTLQAGEGSVAPEERTSDVPK ACENTNGFLEDEVSEKKDDIEKGVSNDGSFFDCNICLDLAREPVVTCCGHLFCWSCLY RWLHVHSDAKECPVCKGEVTAKTLTPIYGRANITHEPEEDSGLKIPPRPSARRVDSLR QTIQRTALNLPVEEMIRRLGSRFDLTRDLTPPREANGARETTERANSILNRILTSRGL RGEQNTGVSLDDVDLTPSSTTGNEVMSSRVHSLYLQRQSQIRRTSRITSLTSALSSAE RIVEAYFRSNPVGRNQEQPPAVDDRDSFSSIAAVINPESQMDTAVEIDSVVSLSASSS RRRNDASRVSDVDSGDSRAHRRRRLN" CDS 29646331..29647587 /locus_tag="TCM_024937" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29613.m000381" /codon_start=1 /product="RING/U-box superfamily protein isoform 1" /protein_id="EOY09521.1" /db_xref="TAIR:AT3G58030.4" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HLI0" /translation="MAEETTDTMNLDLNLGPAPETGSGSVSNESLNWDDLVDNPFDRI REAVRRRRWRWQQVEIPTATQNLSVELDQFMGNSGNVSTLQAGEGSVAPEERTSDVPK ACENTNGFLEDEVSEKKDDIEKGVSNDGSFFDCNICLDLAREPVVTCCGHLFCWSCLY RWLHVHSDAKECPVCKGEVTAKTLTPIYGRANITHEPEEDSGLKIPPRPSARRVDSLR QTIQRTALNLPVEEMIRRLGSRFDLTRDLTPPREANGARETTERANSILNRILTSRGL RGEQNTGVSLDDVDLTPSSTTGNEVMSSRVHSLYLQRQSQIRRTSRITSLTSALSSAE RIVEAYFRSNPVGRNQEQPPAVDDRDSFSSIAAVINPESQMDTAVEIDSVVSLSASSS RRRNDASRVSDVDSGDSRAHRRRRLN" CDS 29646331..29647587 /locus_tag="TCM_024937" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29613.m000381" /codon_start=1 /product="RING/U-box superfamily protein isoform 1" /protein_id="EOY09522.1" /db_xref="TAIR:AT3G58030.4" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HLI0" /translation="MAEETTDTMNLDLNLGPAPETGSGSVSNESLNWDDLVDNPFDRI REAVRRRRWRWQQVEIPTATQNLSVELDQFMGNSGNVSTLQAGEGSVAPEERTSDVPK ACENTNGFLEDEVSEKKDDIEKGVSNDGSFFDCNICLDLAREPVVTCCGHLFCWSCLY RWLHVHSDAKECPVCKGEVTAKTLTPIYGRANITHEPEEDSGLKIPPRPSARRVDSLR QTIQRTALNLPVEEMIRRLGSRFDLTRDLTPPREANGARETTERANSILNRILTSRGL RGEQNTGVSLDDVDLTPSSTTGNEVMSSRVHSLYLQRQSQIRRTSRITSLTSALSSAE RIVEAYFRSNPVGRNQEQPPAVDDRDSFSSIAAVINPESQMDTAVEIDSVVSLSASSS RRRNDASRVSDVDSGDSRAHRRRRLN" mobile_element complement(29648984..29650731) /note="source:INTACT607_F3_scaffold_4-int 12103 13859" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 29650776..29650838 /note="source:scaffold_9_CACTA_0944 63 127" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29653924..29653984) /note="source:scaffold_2_CACTA_0245 3536 3592" /mobile_element_type="transposon:TIR/CACTA" gene complement(29654235..29656077) /locus_tag="TCM_024939" /note="dbxref CacaoGD:Thecc1EG024939" mRNA complement(join(29654235..29655423,29655848..29656077)) /locus_tag="TCM_024939" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.24 coverage" CDS complement(29654878..29655222) /locus_tag="TCM_024939" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09523.1" /translation="MRGLGMVVAGRVAEPVMEVDERAHGGRCPRPTRTVNFCNDDLLL SAAWGGLLVSSLNVVWGFLFASQISILFMQRVSITIYPLLLGRFARFCLFFPSTCKST SKKSFLLLQYLR" mobile_element complement(29661587..29661674) /note="source:scaffold_3_CACTA_0377 2103 2190" /mobile_element_type="transposon:TIR/CACTA" gene 29665076..29667470 /locus_tag="TCM_024940" /note="dbxref CacaoGD:Thecc1EG024940" mRNA join(29665076..29665799,29666120..29666433, 29666558..29666637,29666903..29667352,29667440..29667470) /locus_tag="TCM_024940" /product="Homeobox from" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s20820.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015919t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05890.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc614t8" CDS join(29665508..29665799,29666120..29666433, 29666558..29666637,29666903..29667296) /locus_tag="TCM_024940" /note="paralog of Thecc1EG015919t1" /codon_start=1 /product="Homeobox from" /protein_id="EOY09524.1" /db_xref="Phytozome:POPTR_0016s05890.1" /db_xref="TAIR:AT5G06710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9REK5" /translation="MELALSLGDPSKPFSFLDKAPKLSSKDLGFCMGLGNGFRSQEKG DAFEGESRGEATRDGHDKRVSSDPPLQLDLLPFSPVPRSQPPSQLRFPWLTDNQTGSS EGQGRGLDVNRLPVVAVMDEAEDGAAMSSPNSAVSSFQMDFGIRNGSGRGKRDLEVEN ERASSRASDDDENGSTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQ VEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQL PATTLTMCPSCERVATTSTTANSTAAAATTTTNGSAAAAAAGSNSDAKTGVLPLTKTR GYPFSPLPTHVTQSQPQPQAHQAAS" gene complement(29673022..29676629) /locus_tag="TCM_024941" /note="dbxref CacaoGD:Thecc1EG024941" mRNA complement(join(29673022..29674058,29674270..29674428, 29674529..29674722,29674844..29675036,29675376..29676629)) /locus_tag="TCM_024941" /product="Emb:CAB82953.1, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400020276" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045394t2" /inference="similar to AA sequence:Phytozome:POPTR_0006s20840.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc585t2" CDS complement(join(29673692..29674058,29674270..29674428, 29674529..29674722,29674844..29675036,29675376..29676415)) /locus_tag="TCM_024941" /note="paralog of Thecc1EG045394t2" /codon_start=1 /product="Emb:CAB82953.1, putative" /protein_id="EOY09525.1" /db_xref="Phytozome:POPTR_0006s20840.1" /db_xref="TAIR:AT5G06700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FG35" /translation="MADTAKYMPINGGTTLVTDFRSLFSIIKTRRTVAFFMFAFVGFT VFLAFSPSSNSSAPWFTNIFSTSSTTSATTSADSYRSQFSSVFDYFFSNTSSSPQQQQ GLNFTSYPNNTRSNSTLSQLANPREELPFDKNTTKTQSLNTNKEVASSKNTTFQSPKT NKNNTQSLVLHANQTTLSPPPVYKNPPRTSSQTEKKENSDKAQVLKANQTTIVTEKAP VAANQSTNSPAKSDSVNKVSSGKGEKSVAQKGVVSNYTASLTKKQGNGKNQGNGSGSR LPAKRGIENLIESLMNCDLFDGEWVKDNSYPLYKPGSCSFIDEQFSCVPNGRPDRDFQ KLKWKPKGCTLPRLNGGHMLELLRGKRLVFVGDSLNRNMWESLVCILRGAAKNPKNVF EAHGRHYFRGEASYSFIFKDYNCTLEFFVSPFLVREWEMPDKNGTKKETLRLDLVGKS SDQYKSADILIFNTGHWWTHEKTSKGKDYYQEGSHVYNELNVLEAFRRALTTWARWVD ARVNPMKSMVFFRGYSASHFSGGQWNSGGACDSETEPIRNETYLTPYPSKMLVLESVL KGMKTHVTYLNITRLTDFRKDGHPSIYRKHQKQQMSEEERIAPLKYQDCSHWCLPGVP DSWNELLYAELLVKENKMRQHQRRAR" mobile_element 29681409..29682429 /note="source:CACAO_on_E241_scaffold_112 82 1141" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(29684053..29684184) /note="source:scaffold_2_CACTA_0281 4743 4878" /mobile_element_type="transposon:TIR/CACTA" gene 29688892..29690306 /locus_tag="TCM_024942" /note="dbxref CacaoGD:Thecc1EG024942" mRNA join(29688892..29689544,29689638..29689711, 29689806..29690306) /locus_tag="TCM_024942" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2315t1" CDS join(29689246..29689544,29689638..29689711, 29689806..29690197) /locus_tag="TCM_024942" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09526.1" /translation="MRIRNSGPRSISPPPDHLSSILRLPPSAPREKPAFSPTKAMMTA SDPLSSSLSDQQAPHVMVSRINARLSSFDNGADSKDAIFSASSYAQDSWSFSSNESFG HGIFGQTQTSTSSSASSSLSYSGRWCEEERAIPLKKRRVVMISYETKQSKEIQIMKKD ALGRKREMGEMEGFERCNRGNGKGWRCNKMRVKGHRLCKHHLEMQRMRSMNCPSRNQG DSFAGGANQMRENKRVRVVKARSMSSLLRDSVPLLY" gene 29692032..29693898 /locus_tag="TCM_024943" /note="dbxref CacaoGD:Thecc1EG024943" mRNA join(29692032..29692506,29692613..29692687, 29693320..29693337,29693427..29693898) /locus_tag="TCM_024943" /product="WCRKC thioredoxin 1 isoform 2" /inference="alignment:exonerate-protein:2:frave:gene17994" /inference="similar to AA sequence:ricco:29491.m000088" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:PASA:2:TSA:puevd3b024125t1a2; inference alignment:Newbler:10:TSA:cgbaP2_g12786t00001" mRNA join(29692196..29692506,29692613..29692687, 29693162..29693228,29693320..29693337,29693427..29693833) /locus_tag="TCM_024943" /product="WCRKC thioredoxin 1 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene17994" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043218t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400020229" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g12786t00001" CDS join(29692202..29692506,29692613..29692687, 29693162..29693228,29693320..29693337,29693427..29693525) /locus_tag="TCM_024943" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG043218t1" /codon_start=1 /product="WCRKC thioredoxin 1 isoform 1" /protein_id="EOY09527.1" /db_xref="Phytozome:PGSC0003DMP400020229" /db_xref="TAIR:AT5G06690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HLH6" /translation="MSVLAANSQILYREFYQRDQQQQLWNSGSCMLLQKNCGYFGFDR RNGKWKKNIARRDWRVEALWPDLSRPSAVEMEPINDCDQLDQILLRAQELSQPILIDW MAAWCRKCIYLKPKLEKLAAEYNTKIKFYCVDVNKVPQGLVKRGNISKMPTIQVWKDG EMKEEVIGGHKAWLVIEEVRQMIQKFV" CDS join(29692202..29692506,29692613..29692687, 29693320..29693337,29693427..29693448) /locus_tag="TCM_024943" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29491.m000088" /codon_start=1 /product="WCRKC thioredoxin 1 isoform 2" /protein_id="EOY09528.1" /db_xref="TAIR:AT5G06690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HLH6" /translation="MSVLAANSQILYREFYQRDQQQQLWNSGSCMLLQKNCGYFGFDR RNGKWKKNIARRDWRVEALWPDLSRPSAVEMEPINDCDQLDQILLRAQELSQPILIDW MAAWCRKCIYLKPKLEKLAAEYNTKKCQQFRYGRMER" gene complement(29696145..29698357) /locus_tag="TCM_024944" /note="dbxref CacaoGD:Thecc1EG024944" mRNA complement(join(29696145..29696465,29696687..29696897, 29696997..29697076,29697172..29698061)) /locus_tag="TCM_024944" /product="Aha1 domain-containing protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene17995" /inference="similar to AA sequence:frave:gene17995" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06041t00001" mRNA complement(join(29696404..29696897,29696997..29697076, 29697172..29698244)) /locus_tag="TCM_024944" /product="Aha1 domain-containing protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene17995" /inference="similar to AA sequence:frave:gene17995" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02442t00001; alternateUTRof:Thecc1EG024944t1; inference alignment:Newbler:10:TSA:cgbaB_g06041t00001" mRNA complement(join(29696441..29696897,29696997..29697076, 29697172..29698357)) /locus_tag="TCM_024944" /product="Aha1 domain-containing protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene17995" /inference="similar to AA sequence:frave:gene17995" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06041t00001; alternateUTRof:Thecc1EG024944t1; inference alignment:Newbler:10:TSA:cgbaB_g06041t00001" CDS complement(join(29696804..29696897,29696997..29697076, 29697172..29698056)) /locus_tag="TCM_024944" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene17995" /codon_start=1 /product="Aha1 domain-containing protein isoform 1" /protein_id="EOY09529.1" /db_xref="TAIR:AT3G12050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LHL7" /translation="MAKYGEGDKRWIVEDRPDGANVHNWHWSETDCLPWSKTFFTKSL SNLTILDGEAKLHIKTKKVEKVDGEAYVNVRKGKIIPGYEISVNLSWEGEAKDGEGKT LLKVDGNVEIPYISDENADEDPEVKVTVKDEGPIGKTLKEAMLTKGKPLVLEKVRDYV KTMAKGGPAKDELEAKKLAPKNSNSSCNSAGVSKEKVVVEKEVKKEAKKEGKKGFKTI TMSEKFNCRAKDMYEILMDENRWKGFTQSNARISKDVGGQFSIFDGSVTGSNLELQEG KLIVQRWRFGSWPDGIDSTVRLVFDEPEPGVTIIKLTHTDVPEEDRYGNATVVENTER GWRDLIFNKIRAVFGFGI" CDS complement(join(29696804..29696897,29696997..29697076, 29697172..29698056)) /locus_tag="TCM_024944" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene17995" /codon_start=1 /product="Aha1 domain-containing protein isoform 1" /protein_id="EOY09530.1" /db_xref="TAIR:AT3G12050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LHL7" /translation="MAKYGEGDKRWIVEDRPDGANVHNWHWSETDCLPWSKTFFTKSL SNLTILDGEAKLHIKTKKVEKVDGEAYVNVRKGKIIPGYEISVNLSWEGEAKDGEGKT LLKVDGNVEIPYISDENADEDPEVKVTVKDEGPIGKTLKEAMLTKGKPLVLEKVRDYV KTMAKGGPAKDELEAKKLAPKNSNSSCNSAGVSKEKVVVEKEVKKEAKKEGKKGFKTI TMSEKFNCRAKDMYEILMDENRWKGFTQSNARISKDVGGQFSIFDGSVTGSNLELQEG KLIVQRWRFGSWPDGIDSTVRLVFDEPEPGVTIIKLTHTDVPEEDRYGNATVVENTER GWRDLIFNKIRAVFGFGI" CDS complement(join(29696804..29696897,29696997..29697076, 29697172..29698056)) /locus_tag="TCM_024944" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene17995" /codon_start=1 /product="Aha1 domain-containing protein isoform 1" /protein_id="EOY09531.1" /db_xref="TAIR:AT3G12050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LHL7" /translation="MAKYGEGDKRWIVEDRPDGANVHNWHWSETDCLPWSKTFFTKSL SNLTILDGEAKLHIKTKKVEKVDGEAYVNVRKGKIIPGYEISVNLSWEGEAKDGEGKT LLKVDGNVEIPYISDENADEDPEVKVTVKDEGPIGKTLKEAMLTKGKPLVLEKVRDYV KTMAKGGPAKDELEAKKLAPKNSNSSCNSAGVSKEKVVVEKEVKKEAKKEGKKGFKTI TMSEKFNCRAKDMYEILMDENRWKGFTQSNARISKDVGGQFSIFDGSVTGSNLELQEG KLIVQRWRFGSWPDGIDSTVRLVFDEPEPGVTIIKLTHTDVPEEDRYGNATVVENTER GWRDLIFNKIRAVFGFGI" gene 29699395..29702862 /locus_tag="TCM_024945" /note="dbxref CacaoGD:Thecc1EG024945" mRNA join(29699395..29700109,29700436..29700507, 29700644..29700767,29701216..29701286,29702309..29702366, 29702467..29702816) /locus_tag="TCM_024945" /product="DNA-3-methyladenine glycosylase isoform 1" /inference="alignment:exonerate- protein:2:ricco:28582.m000324" /inference="similar to AA sequence:ricco:28582.m000324" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02498t00001" mRNA join(29699562..29700109,29700436..29700507, 29700644..29700767,29701222..29701286,29702309..29702366, 29702467..>29702509) /locus_tag="TCM_024945" /product="DNA-3-methyladenine glycosylase isoform 3" /inference="alignment:exonerate- protein:2:ricco:28582.m000324" /inference="similar to AA sequence:ricco:28582.m000324" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc694t1; inference alignment:Newbler:10:TSA:cgbaB_g02498t00001" mRNA join(29699608..29700109,29700436..29700507, 29700644..29700767,29701216..29701286,29702272..29702366, 29702467..29702862) /locus_tag="TCM_024945" /product="DNA-3-methyladenine glycosylase isoform 2" /inference="alignment:exonerate- protein:2:ricco:28582.m000324" /inference="similar to AA sequence:ricco:28582.m000324" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc772t3; inference alignment:Newbler:10:TSA:cgbaB_g02498t00001" CDS join(29699669..29700109,29700436..29700507, 29700644..29700767,29701216..29701286,29702309..29702366, 29702467..29702630) /locus_tag="TCM_024945" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28582.m000324" /codon_start=1 /product="DNA-3-methyladenine glycosylase isoform 1" /protein_id="EOY09532.1" /db_xref="TAIR:AT3G12040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TIC4" /translation="MNKYPPKPNRSQHSTAPPCFKFRPKSISFWSPSAPSLCLQMNPT RRFKRVASKPNRSIQPSQSSNDLETRTSQRSKSVTVRTKRKPRQIQPPPQPKLKIESS PVSDPSFPKTTILSPGFFQIDALDLAPRLLGKFLRRDDVVLQITEVEAYRPNDSACHG RFGITSRTAPVFGPGGHAYVYLCYGLHTMLNVVADKEGVGAAVLIRACAPVCGLETIQ QRRGQQTEKPILLTGPGKVGQALGISTEWSNHPLYAPGGLELLDGPQPEKILVGPRVG IEYALPEHVSALWRFAIAGTSWISAPKNTLRSP" CDS join(29699669..29700109,29700436..29700507, 29700644..29700767,29701222..29701286,29702309..29702366, 29702467..>29702507) /locus_tag="TCM_024945" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:28582.m000324" /codon_start=1 /product="DNA-3-methyladenine glycosylase isoform 3" /protein_id="EOY09534.1" /db_xref="TAIR:AT3G12040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TIC4" /translation="MNKYPPKPNRSQHSTAPPCFKFRPKSISFWSPSAPSLCLQMNPT RRFKRVASKPNRSIQPSQSSNDLETRTSQRSKSVTVRTKRKPRQIQPPPQPKLKIESS PVSDPSFPKTTILSPGFFQIDALDLAPRLLGKFLRRDDVVLQITEVEAYRPNDSACHG RFGITSRTAPVFGPGGHAYVYLCYGLHTMLNVVADKEGVGAAVLIRACAPVCETIQQR RGQQTEKPILLTGPGKVGQALGISTEWSNHPLYAPGGLELLDGPQPEKI" CDS join(29699669..29700109,29700436..29700507, 29700644..29700767,29701216..29701286,29702272..29702280) /locus_tag="TCM_024945" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28582.m000324" /codon_start=1 /product="DNA-3-methyladenine glycosylase isoform 2" /protein_id="EOY09533.1" /db_xref="TAIR:AT3G12040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TIC4" /translation="MNKYPPKPNRSQHSTAPPCFKFRPKSISFWSPSAPSLCLQMNPT RRFKRVASKPNRSIQPSQSSNDLETRTSQRSKSVTVRTKRKPRQIQPPPQPKLKIESS PVSDPSFPKTTILSPGFFQIDALDLAPRLLGKFLRRDDVVLQITEVEAYRPNDSACHG RFGITSRTAPVFGPGGHAYVYLCYGLHTMLNVVADKEGVGAAVLIRACAPVCGLETIQ QRRGQQTEKPILLTGPGKVC" gene complement(29702842..29729446) /locus_tag="TCM_024946" /note="dbxref CacaoGD:Thecc1EG024946" mRNA complement(join(29702842..29702931,29715280..29715635, 29715719..29716180,29716278..29718594,29729135..29729446)) /locus_tag="TCM_024946" /product="Spindle pole body component 98 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29269.m000253" /inference="similar to AA sequence:ricco:29269.m000253" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc349t1" mobile_element 29704639..29704750 /note="source:CACAO_M_E4304_F20_scaffold_2 7136 7246" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 29705789..29708932 /note="source:CACAO_M_E44079_F19_scaffold_5 1 3144" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(29710952..29711656) /note="source:INTACT687_F13_scaffold_3-int 1298 2054" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(29713127..29713531) /note="source:MITE_PIF_Tourist_4 1 425" /mobile_element_type="transposon:TIR/MITE" mobile_element 29713683..29714269 /note="source:CACAO_MITE_S138_scaffold_5 1 587" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(29714120..29714285) /note="source:CACAO_Mariner_E220_scaffold_9 8420 8608" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(29714360..29714507) /note="source:CACAO_on_E33_A_scaffold_3 7470 7618" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(29714392..29714653) /note="source:CACAO_MITE_S87_scaffold_3 142 409" /mobile_element_type="transposon:TIR/MITE" mRNA complement(join(29714868..29715298,29716010..29716180, 29716278..29718666)) /locus_tag="TCM_024946" /product="Spindle pole body component 98 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29269.m000253" /inference="similar to AA sequence:ricco:29269.m000253" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc349t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc349t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc264t23_C2" CDS complement(join(29715208..29715298,29716010..29716180, 29716278..29718541)) /locus_tag="TCM_024946" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29269.m000253" /codon_start=1 /product="Spindle pole body component 98 isoform 2" /protein_id="EOY09536.1" /db_xref="TAIR:AT5G06680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FG37" /translation="MEEEDQRKVTDLVIELVRRLLSQQNSQNPNLNSPHFSQSLRYAL RILSSRLTPSISPDADAIAESIKRRLATQGNSSDALTFADLYTKFASKNGPGSVNNKW AVLYLLKIVSEDRKTAKNSMDSSFSLPNLGLNDDEMGNNLRVLNGKDNREKGWKNGVL LVSKDPENLREISFREFRNLVKEENEVSEEVLVRDVLYACQGIDGKYVKFDSTLDGYA LSDLVKVPRATRIIVRKLCELGWLFRKVKGYISESMDRFPAEDVGTVGQAFCAALQDE LSEYYKLLAVLEAQSMNPVPLVSETASSGNYLSLRRLSVWFAEPMVKMRLMAVLVDKC KVLRGGAMAGAIHLHAQHGDPLVHDFMRRLLRRVCSPLFEMVRSWVLEGELEDIYAEF FIVGQPVKAESLWREGYRLHAGMLPSFISQSLAQRILRTGKSINFLRVCCDDRGWADA TTEAAAAAGTTTRRGGLGYGETDALESLVMEAAKRIDKHLLDVIYKRYKFKEHCLAIK RYLLLGQGDFVQYLMDIVGPELSEPANTISSFKLAGLLESAIRSSNAQYDDPDILDRL RVRMMPHNTGDRGWDVFSLEYDARVPLDTVFTESVMTRYLRIFNFLWKLRRVEHALIG AWKTMKPNCITSHAFTKLQRAVKLQLLSTLRRCQVLWDEMNHFVTNLQYYIMFEVLEV SWSNFSNEMEVAKDLDDLLAAHEKYLHSIVEKSLLGERSQTLYKSLFVLFDLILQFRS HADRLYEGIHELQSRTVESSSNSRDKSKSSRQRKDKSSEPGSWISEGRKALTQRASEF LQNMGQDLDALATDLVSGIVVSLAHNAKCGGLYTFTRKIDYFS" CDS complement(join(29715886..29716180,29716278..29718541)) /locus_tag="TCM_024946" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29269.m000253" /codon_start=1 /product="Spindle pole body component 98 isoform 1" /protein_id="EOY09535.1" /db_xref="TAIR:AT5G06680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FG37" /translation="MEEEDQRKVTDLVIELVRRLLSQQNSQNPNLNSPHFSQSLRYAL RILSSRLTPSISPDADAIAESIKRRLATQGNSSDALTFADLYTKFASKNGPGSVNNKW AVLYLLKIVSEDRKTAKNSMDSSFSLPNLGLNDDEMGNNLRVLNGKDNREKGWKNGVL LVSKDPENLREISFREFRNLVKEENEVSEEVLVRDVLYACQGIDGKYVKFDSTLDGYA LSDLVKVPRATRIIVRKLCELGWLFRKVKGYISESMDRFPAEDVGTVGQAFCAALQDE LSEYYKLLAVLEAQSMNPVPLVSETASSGNYLSLRRLSVWFAEPMVKMRLMAVLVDKC KVLRGGAMAGAIHLHAQHGDPLVHDFMRRLLRRVCSPLFEMVRSWVLEGELEDIYAEF FIVGQPVKAESLWREGYRLHAGMLPSFISQSLAQRILRTGKSINFLRVCCDDRGWADA TTEAAAAAGTTTRRGGLGYGETDALESLVMEAAKRIDKHLLDVIYKRYKFKEHCLAIK RYLLLGQGDFVQYLMDIVGPELSEPANTISSFKLAGLLESAIRSSNAQYDDPDILDRL RVRMMPHNTGDRGWDVFSLEYDARVPLDTVFTESVMTRYLRIFNFLWKLRRVEHALIG AWKTMKPNCITSHAFTKLQRAVKLQLLSTLRRCQVLWDEMNHFVTNLQYYIMFEVLEV SWSNFSNEMEVAKDLDDLLAAHEKYLHSIVEKSLLGERSQTLYKSLFVLFDLILQFRS HADRLYEGIHELQSRTVESSSNSRDKSKSSRQRKDKSSEPGSWISEGRKALTQRASEF LQNMGQDLDALATEYTSLLEGFLAQLPVQQHIDLKFLLFRLDFTEFYSRQHPTV" mobile_element complement(29720197..29720740) /note="source:INTACT554_F250_scaffold_7-int 2687 2991" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(29721237..29721635) /note="source:INTACT641_F282_scaffold_1-int 4346 6305" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(29721636..29723192) /note="source:INTACT1391F_F387_scaffold_8-int 11704 13255" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 29723732..29724841 /note="source:CACAO_Again_on_E201_scaffold_9 1 1113" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(29724652..29724872) /note="source:CACAO_Again_on_E210_scaffold_9 7 227" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(29724889..29726131) /note="source:scaffold_4_CACTA_0483 5578 6829" /mobile_element_type="transposon:TIR/CACTA" gene 29729886..29734340 /locus_tag="TCM_024949" /note="dbxref CacaoGD:Thecc1EG024949" mRNA join(29729886..29730026,29730699..29730701, 29731787..29732090,29732732..29733118,29733569..29734340) /locus_tag="TCM_024949" /product="Seven in absentia of 2 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29491.m000092" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045399t2" /inference="similar to AA sequence:ricco:29491.m000092" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1351t8; alternateUTRof:Thecc1EG024949t1; inference alignment:Newbler:10:TSA:cgbaB_g02206t00001" mRNA join(29729932..29730026,29730612..29730698, 29731787..29732090,29732732..29733118,29733569..29734257) /locus_tag="TCM_024949" /product="Seven in absentia of 2 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29491.m000092" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045399t2" /inference="similar to AA sequence:ricco:29491.m000092" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b024132t1a2; alternateUTRof:Thecc1EG024949t1; inference alignment:Newbler:10:TSA:cgbaB_g02206t00001" mRNA join(29729961..29730026,29730637..29730728, 29731787..29732090,29732732..29733118,29733569..29734257) /locus_tag="TCM_024949" /product="Seven in absentia of 2 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29491.m000092" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045399t2" /inference="similar to AA sequence:ricco:29491.m000092" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02206t00001; inference alignment:Newbler:10:TSA:cgbaB_g02206t00001" CDS join(29731875..29732090,29732732..29733118, 29733569..29733889) /locus_tag="TCM_024949" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29491.m000092; paralog of Thecc1EG045399t2" /codon_start=1 /product="Seven in absentia of 2 isoform 1" /protein_id="EOY09537.1" /db_xref="TAIR:AT3G58040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PB73" /translation="MAPGGSACKEVVESHPSVADYDIATAKSESNTTTMKSPVSLLGK HGIHSNNGVYELLECPVCTNLMYPPIHQCPNGHTLCSNCKIRVHNCCPTCCYDLGNIR CLALEKVAESLELPCKYQNLGCHDIFPYYSKLKHEQHCRFCPYNCPYAGSECSVTGDI STLVAHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGKQFCLHFEAFQ FGMAPVYMAFLRFMGDDNEAKKFSYSLEVGANGRRLIWQGIPRSIRDSHRKVRDSQDG LIIQRNLALYFSGGDRQELKLRVTGRIWKEE" CDS join(29731875..29732090,29732732..29733118, 29733569..29733889) /locus_tag="TCM_024949" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29491.m000092; paralog of Thecc1EG045399t2" /codon_start=1 /product="Seven in absentia of 2 isoform 1" /protein_id="EOY09538.1" /db_xref="TAIR:AT3G58040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PB73" /translation="MAPGGSACKEVVESHPSVADYDIATAKSESNTTTMKSPVSLLGK HGIHSNNGVYELLECPVCTNLMYPPIHQCPNGHTLCSNCKIRVHNCCPTCCYDLGNIR CLALEKVAESLELPCKYQNLGCHDIFPYYSKLKHEQHCRFCPYNCPYAGSECSVTGDI STLVAHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGKQFCLHFEAFQ FGMAPVYMAFLRFMGDDNEAKKFSYSLEVGANGRRLIWQGIPRSIRDSHRKVRDSQDG LIIQRNLALYFSGGDRQELKLRVTGRIWKEE" CDS join(29731875..29732090,29732732..29733118, 29733569..29733889) /locus_tag="TCM_024949" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29491.m000092; paralog of Thecc1EG045399t2" /codon_start=1 /product="Seven in absentia of 2 isoform 1" /protein_id="EOY09539.1" /db_xref="TAIR:AT3G58040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PB73" /translation="MAPGGSACKEVVESHPSVADYDIATAKSESNTTTMKSPVSLLGK HGIHSNNGVYELLECPVCTNLMYPPIHQCPNGHTLCSNCKIRVHNCCPTCCYDLGNIR CLALEKVAESLELPCKYQNLGCHDIFPYYSKLKHEQHCRFCPYNCPYAGSECSVTGDI STLVAHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGKQFCLHFEAFQ FGMAPVYMAFLRFMGDDNEAKKFSYSLEVGANGRRLIWQGIPRSIRDSHRKVRDSQDG LIIQRNLALYFSGGDRQELKLRVTGRIWKEE" gene 29735367..29738734 /locus_tag="TCM_024951" /note="dbxref CacaoGD:Thecc1EG024951" mRNA join(29735367..29735488,29735814..29735990, 29736112..29736368,29736468..29736594,29736683..29736956, 29737610..29737742,29737815..29737901,29738040..29738734) /locus_tag="TCM_024951" /product="Kinase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s20850.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020104t1" /inference="similar to AA sequence:Phytozome:Glyma19g33180.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6843t1" CDS join(29735894..29735990,29736112..29736368, 29736468..29736594,29736683..29736956,29737610..29737742, 29737815..29737901,29738040..29738165) /locus_tag="TCM_024951" /note="paralog of Thecc1EG020104t1" /codon_start=1 /product="Kinase superfamily protein" /protein_id="EOY09540.1" /db_xref="Phytozome:Glyma19g33180.1" /db_xref="TAIR:AT2G41970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9DFG5" /translation="MFCCGGAEEEPNGPPANQYTAPPRGGNQFGGAGSGRGEPRASNV VKSGAPQKVLPIEIPAMTLDELNRMTGNFGTKALIGEGSYGRVFYAKLSNGQDAAIKK LDTSSSQEPDSDFGAQLSVVSRLKHEHFVELMGYCLEANNRILVYQYATMGSLHDVLH GRKGVQGAEPGPVLTWNQRVKVAYGAAKGLEYLHEKVQPSIVHRDVRSSNVLLFDDFM AKIADFNLTNQSSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELL TGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLSNDYPPKAIAKLAAVAALCV QYEADFRPNMTIVVKAIQPLLNAKPAGAESQA" gene 29740484..29749701 /locus_tag="TCM_024953" /note="dbxref CacaoGD:Thecc1EG024953" mRNA join(29740484..29740975,29741806..29742174, 29742251..29742510,29744491..29744632,29744838..29745209, 29745288..29745419,29746588..29746716,29746831..29749701) /locus_tag="TCM_024953" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s20900.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033469001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6902t2" mRNA join(29740496..29740975,29741806..29741905, 29742000..29742174,29742251..29742510,29744491..29744632, 29744838..29745209,29745288..29745419,29746588..29746716, 29746831..29749546) /locus_tag="TCM_024953" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s20900.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033469001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc357t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6902t2" CDS join(29740877..29740975,29741806..29742174, 29742251..29742510,29744491..29744632,29744838..29745209, 29745288..29745419,29746588..29746716,29746831..29749143) /locus_tag="TCM_024953" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY09541.1" /db_xref="Phytozome:GSVIVT01033469001" /db_xref="TAIR:AT3G58050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HLH3" /translation="MPGLAQRNEQYSNASFGFWCKHSDDVSYNQLQKFWSELSFQARQ ELLRIDKQTLFEQARKNMYCSRCNGLLLEGFSQIVMYGKSLLQEGIAANLHYNRSGVS KNQSDGGLSMTNGSQDEIQDPSVHPWGGLTTTRDGSLTLLDCYLCSKSLKGLQNVFDS ARARERERELLYPDACGGGGRGWISQGIASYGRGHGTRETCALHTARLSCDTLVDFWS ALGEETRQSLLRMKEDDFIERLMYRFDSKRFCRDCRRNVIREFKELKELKRMRREPRC TSWFCVADTAFLYEVSDDTVQADWRQTFADTVGTYHHFEWAVGTGEGKSDIMEFENVG MNGSVQVNGLDLGSLSACYITLRAWKLDGRCSELSVKGHALKGQQCVHCRLVVGDGYV TITRGESIRRFFEHAEEAEEEEDDDSMDKDGNELDGECSRPQKHAKSPELAREFLLDA ATVIFKEQVEKAFREGTARQNAHSIFVCLALKLLEERVHVACKEIITLEKQMKLLEEE EKEKREEEERKERKRTKEREKKLRRKERLKGKEREKEKQCAESSITPVAPDVSKEESS PSIEVEENIAISCRDSVSDTGDIIVSRPGSPDIEEQFLDGHSTSSLQNHSFDSPDAEG TKEKDGNGSFTMEQSKFSRRRLKFRKDGPFDPSPKWSDRRRFAAVSESAPVNRSEPRY QIENFEAPSRSINGLNRQLRISSAKPNGRNCGVKYTEKFLCSNGRVDRYDFYSCSCSQ HNEYRAKIEPLVSATRVGREPKSVSKSESAVDMSKQVYRGNKYNRQDYMREDCGKLKN KIIAGTNPSGRDSLHSKKVWEPTEAQKKYPRSNSDTDITLRSSTYSEGAGPDNNFVKS SGETCSSEASVNLGEIDHEHSKANKSRNSSIAMDEDCHVEQQDQCSSLNAVYEEVGIC SNRNPTLNGISHSMMSSTSNSDNCSSCLSEGDSNTSSSNHGNLESSSTSDSEDASQQS DGRDTSVCHQNGFSEVQVKGMDKKQDVNGGVALGSQALFGNTPDGRGNKVPGNPLTKT AENSDNGKPTAVMGSQHQGMFTSVHNQHIQFPVYQAPSTMGYYHQNPVSWPASPANGL MPFPPNPYLYAGPLGYGLNGNSRLCMPYGTLQHLATPLFNPGPVPVYQPVSKVNGLYS EEQTQIPKPGTTKEAFTEVNTERVVPGRLHPTEQAANGEGRQNDVSAKLHTDNTSFSL FHFGGPVALSTGCKSNPVPLKDEIVGELSSQFSVDHVENGHACNKKETTIEEYNLFAA SNGIRFPFF" CDS join(29741904..29741905,29742000..29742174, 29742251..29742510,29744491..29744632,29744838..29745209, 29745288..29745419,29746588..29746716,29746831..29749143) /locus_tag="TCM_024953" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY09542.1" /db_xref="Phytozome:GSVIVT01033469001" /db_xref="TAIR:AT3G58050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HLH3" /translation="MSGVSKNQSDGGLSMTNGSQDEIQDPSVHPWGGLTTTRDGSLTL LDCYLCSKSLKGLQNVFDSARARERERELLYPDACGGGGRGWISQGIASYGRGHGTRE TCALHTARLSCDTLVDFWSALGEETRQSLLRMKEDDFIERLMYRFDSKRFCRDCRRNV IREFKELKELKRMRREPRCTSWFCVADTAFLYEVSDDTVQADWRQTFADTVGTYHHFE WAVGTGEGKSDIMEFENVGMNGSVQVNGLDLGSLSACYITLRAWKLDGRCSELSVKGH ALKGQQCVHCRLVVGDGYVTITRGESIRRFFEHAEEAEEEEDDDSMDKDGNELDGECS RPQKHAKSPELAREFLLDAATVIFKEQVEKAFREGTARQNAHSIFVCLALKLLEERVH VACKEIITLEKQMKLLEEEEKEKREEEERKERKRTKEREKKLRRKERLKGKEREKEKQ CAESSITPVAPDVSKEESSPSIEVEENIAISCRDSVSDTGDIIVSRPGSPDIEEQFLD GHSTSSLQNHSFDSPDAEGTKEKDGNGSFTMEQSKFSRRRLKFRKDGPFDPSPKWSDR RRFAAVSESAPVNRSEPRYQIENFEAPSRSINGLNRQLRISSAKPNGRNCGVKYTEKF LCSNGRVDRYDFYSCSCSQHNEYRAKIEPLVSATRVGREPKSVSKSESAVDMSKQVYR GNKYNRQDYMREDCGKLKNKIIAGTNPSGRDSLHSKKVWEPTEAQKKYPRSNSDTDIT LRSSTYSEGAGPDNNFVKSSGETCSSEASVNLGEIDHEHSKANKSRNSSIAMDEDCHV EQQDQCSSLNAVYEEVGICSNRNPTLNGISHSMMSSTSNSDNCSSCLSEGDSNTSSSN HGNLESSSTSDSEDASQQSDGRDTSVCHQNGFSEVQVKGMDKKQDVNGGVALGSQALF GNTPDGRGNKVPGNPLTKTAENSDNGKPTAVMGSQHQGMFTSVHNQHIQFPVYQAPST MGYYHQNPVSWPASPANGLMPFPPNPYLYAGPLGYGLNGNSRLCMPYGTLQHLATPLF NPGPVPVYQPVSKVNGLYSEEQTQIPKPGTTKEAFTEVNTERVVPGRLHPTEQAANGE GRQNDVSAKLHTDNTSFSLFHFGGPVALSTGCKSNPVPLKDEIVGELSSQFSVDHVEN GHACNKKETTIEEYNLFAASNGIRFPFF" gene complement(29750070..29752057) /locus_tag="TCM_024954" /note="dbxref CacaoGD:Thecc1EG024954" mRNA complement(join(29750070..29750376,29750671..29751495, 29752022..29752057)) /locus_tag="TCM_024954" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s20910.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s20910.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g04087t00001" CDS complement(join(29750171..29750376,29750671..29751295)) /locus_tag="TCM_024954" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09543.1" /db_xref="Phytozome:POPTR_0006s20910.1" /db_xref="TAIR:AT2G41950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HA06" /translation="MRSLLLPCSFLHPSPPRLSLPRLQSQPRHINSDSSRHDICHASP PCLSFQSNFSCKSLCSHQSLAGTANASNEGAVSVINIEDFYEKDWSFLDSDDLNSEQV RQNIDRITSAGEIEETSRVLVSIGSEGFVDHLVESSPSQLLLVVHDSILILAGIKEKY DEVKCWQGELIGVPEKWSPLDVVFLYFLPALPFKLDQIFTLLAKRCSPGARLVISHPQ GRAVLQQQGKQFPDIIVANLPDKTTLQRVAADHSFEMTEFEDEPGFYLAVLKFIKANN " gene complement(29752414..29759107) /locus_tag="TCM_024955" /note="dbxref CacaoGD:Thecc1EG024955" mRNA complement(join(29752414..29752809,29753116..29753249, 29753799..29753949,29754035..29754108,29754684..29754882, 29756787..29756959,29758134..29758346,29758589..29759107)) /locus_tag="TCM_024955" /product="Metal tolerance protein 4 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400002058" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040309t4" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400002058" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:PASA:2:TSA:puevd3b024136t1a2; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc6654t5" mRNA complement(join(29752414..29752809,29753116..29753249, 29753799..29753949,29754035..29754213,29754684..29754882, 29756787..29756959,29758134..29758346,29758589..29759107)) /locus_tag="TCM_024955" /product="Metal tolerance protein 4 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400002058" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040309t4" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400002058" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc6654t5" CDS complement(join(29752630..29752809,29753116..29753249, 29753799..29753949,29754035..29754108,29754684..29754882, 29756787..29756959,29758134..29758344)) /locus_tag="TCM_024955" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG040309t4" /codon_start=1 /product="Metal tolerance protein 4 isoform 2" /protein_id="EOY09545.1" /db_xref="Phytozome:PGSC0003DMP400002058" /db_xref="TAIR:AT3G58060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10PP8" /translation="MEGGDLNNVRTPLLSSEGEKLIQNGQTEYFYSVDALKCEFFSKL PDRVRSGLDPETPFHMDLSKTTGLIEGEKEYYEKQFATLRSFEEVDSLELPHVIDEAQ GHEEQAQHERAINFSNWANGFLLAFKIYATVKSGSLAIAASTLDSLLDLLAGGILWFT NLSMKSINIYKYPIGKLRMQPVGIIIFAAVMATLATALKLVLWFYCRSSGSKIVRAYA KDHYFDVVTNLVGLIAAVLGDKFYWWIDPVGAIILALYTITNWSGTVLENAVSLVGQS APPEVLQKLTYLVLRHHPLIKRVDTVRAYTFGVLFFVEVDIELPEDLPLKEAHAIGES LQIKIEELPEVERAFVHLDFECEHKPEHSVLNRLPSTQP" CDS complement(join(29752630..29752809,29753116..29753249, 29753799..29753949,29754035..29754213,29754684..29754882, 29756787..29756959,29758134..29758344)) /locus_tag="TCM_024955" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG040309t4" /codon_start=1 /product="Metal tolerance protein 4 isoform 1" /protein_id="EOY09544.1" /db_xref="Phytozome:PGSC0003DMP400002058" /db_xref="TAIR:AT3G58060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10PP8" /translation="MEGGDLNNVRTPLLSSEGEKLIQNGQTEYFYSVDALKCEFFSKL PDRVRSGLDPETPFHMDLSKTTGLIEGEKEYYEKQFATLRSFEEVDSLELPHVIDEAQ GHEEQAQHERAINFSNWANGFLLAFKIYATVKSGSLAIAASTLDSLLDLLAGGILWFT NLSMKSINIYKYPIGKLRMQPVGIIIFAAVMATLGFQVLVEAIEQLIKDKPSDKMTSL QLIWLYSIMLTATALKLVLWFYCRSSGSKIVRAYAKDHYFDVVTNLVGLIAAVLGDKF YWWIDPVGAIILALYTITNWSGTVLENAVSLVGQSAPPEVLQKLTYLVLRHHPLIKRV DTVRAYTFGVLFFVEVDIELPEDLPLKEAHAIGESLQIKIEELPEVERAFVHLDFECE HKPEHSVLNRLPSTQP" mobile_element 29755246..29756734 /note="source:CACAO_M_E44080_F17_scaffold_5 1 1489" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 29759391..29759486 /note="source:CACAO_Again_on_E207_scaffold_9 1006 1098" /mobile_element_type="transposon:TIR/hAT" mobile_element 29759617..29759684 /note="source:CACAO_Again_on_E207_scaffold_9 1020 1087" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(29759623..29759732) /note="source:CACAO_M_S_E52027_F3_scaffold_5 3835 3949" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 29760148..29761163 /locus_tag="TCM_024956" /note="dbxref CacaoGD:Thecc1EG024956" mRNA 29760148..29761163 /locus_tag="TCM_024956" /product="Transmembrane and coiled-coil domain-containing protein 1" /inference="alignment:exonerate- protein:2:ricco:28582.m000331" /inference="similar to AA sequence:ricco:28582.m000331" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc402t6" CDS 29760260..29760844 /locus_tag="TCM_024956" /note="dbxref ricco:28582.m000331" /codon_start=1 /product="Transmembrane and coiled-coil domain-containing protein 1" /protein_id="EOY09546.1" /db_xref="TAIR:AT5G06660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FG04" /translation="MATPQFLSSFKYSDSLTVVAISFCTAVVCEAISWLLIYRTNSYK SLKSSIDKAAKKLETMKTDQNPNKLSNKKSKTKKIDRVETSLKESSRDLSLFKFKSGA VVALVLIVVFGFLNSLFEGKVVAKLPFKPIGIVMKMSHRGLQGEDSTDCSMVFLYFLC SISIRTNLQKFLGFSPPRGAAGAGLFPMPDPKTN" gene 29763922..29764884 /locus_tag="TCM_024957" /note="dbxref CacaoGD:Thecc1EG024957" mRNA 29763922..29764884 /locus_tag="TCM_024957" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.37 coverage" CDS 29764071..29764814 /locus_tag="TCM_024957" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09547.1" /translation="MQAKADSAESSNSIAQSIPCLPAPLVPLSETQETCPFVCYRCSK RFPSTHALGGHQNAHKKERNEERSLYVEQRLALMRQPPITLPSLTPLTVVPSAQIFGH LAKPAVINSVPASHGSMLLQPLASGFILDRLKAPVFMPAGFHFGPARTEVKGGEVSYK ASHHESDNYHPYKKPVDKESMARKLYLYEENDFWAKAEEDSACSKEYSASTTTDDAGP NAEALINEDKEDAHDQNTSKEELDLTLRL" gene 29765586..29767425 /locus_tag="TCM_024958" /note="dbxref CacaoGD:Thecc1EG024958" mRNA join(29765586..29765663,29766404..29767425) /locus_tag="TCM_024958" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.21 coverage" CDS join(29765637..29765663,29766404..29767189) /locus_tag="TCM_024958" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09548.1" /translation="MNWDESADRLRPSVGHLVFKQNPIIMSMVPAGESNSKGKAVASS EPKPEFKCPRCCKIFHSAPALCGHQNAHRLVKEPMNISPVLAAVLNNPLPPDDKPELI TPSPKPAGINPTVGTKELISKQPSAGNVSPRYHPYKRFGKEPIQDNLVKETCSNNNPD KEAEGGEDFMKQLIQKDAQPQYHPFERVLPEYSQDEYPLPQCLMTMDLLGEWMPISGF GDHGHLHGTSTGRTLSDPFLRIHPMEAGEAAGLEIGSKTSPGHLDLELKLGF" gene 29770473..29771492 /locus_tag="TCM_024959" /note="dbxref CacaoGD:Thecc1EG024959" mRNA 29770473..29771492 /locus_tag="TCM_024959" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.96 coverage" CDS 29770581..29771222 /locus_tag="TCM_024959" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09549.1" /translation="MQAKANCRESSTAPSKPRVSLGLEAVVKSMWSCPSMCSEASSHS HASDALGGDQYQAALTAREEALAGIIALKESLGKGNSRPTPGIVIEPFNIKVIPPCKD CQFIDYNWDDLIAQAGSDSTDHVSGPAYEGKKAEDFDSSVPLTENFPGYGVIDRCGGC FGCSNYHFEPPCCKELLPLALHHLFKQTSTTNGGENKAADGALSEKMDSNLKL" gene complement(29771539..29790852) /locus_tag="TCM_024960" /note="dbxref CacaoGD:Thecc1EG024960" mRNA complement(join(29771539..29772871,29773541..29773693, 29773802..29773849,29774157..29774207,29774298..29774423, 29774508..29774648,29774911..29775141,29775954..29776112, 29776253..29776435,29777844..29777990,29778170..29778277, 29778438..29778542,29779500..29779604,29779818..29779880, 29780201..29780268,29780619..29780697,29786547..29786606, 29786757..>29786773)) /locus_tag="TCM_024960" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:28582.m000335" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035157t3" /inference="similar to AA sequence:ricco:28582.m000335" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7010t4; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc722t9" mRNA complement(join(29771621..29772871,29773544..29773693, 29773802..29773849,29774157..29774207,29774298..29774423, 29774508..29774648,29774911..29775141,29775954..29776112, 29776253..29776435,29777844..29777990,29778170..29778277, 29778438..29778542,29779500..29779604,29779818..29779880, 29780201..29780268,29780619..29780697,29786547..29786606, 29786757..29786810,29786891..29786956,29787722..29787774, 29788616..29788705,29789357..29789454,29789547..29789819, 29790353..29790852)) /locus_tag="TCM_024960" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:28582.m000335" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035157t3" /inference="similar to AA sequence:ricco:28582.m000335" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc722t9" CDS complement(join(29772350..29772871,29773544..29773693, 29773802..29773849,29774157..29774207,29774298..29774423, 29774508..29774648,29774911..29775141,29775954..29776112, 29776253..29776435,29777844..29777990,29778170..29778277, 29778438..29778542,29779500..29779604,29779818..29779880, 29780201..29780268,29780619..29780697,29786547..29786606, 29786757..29786810,29786891..29786956,29787722..29787774, 29788616..29788705,29789357..29789454,29789547..29789794)) /locus_tag="TCM_024960" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28582.m000335; paralog of Thecc1EG035157t3" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /protein_id="EOY09550.1" /db_xref="TAIR:AT3G12020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4J8L3" /translation="MSSKRGLKSKKLGSSNLKAANSPSSSTTSSSKQFLETSIDGQSS PASSSARSKPQYFYSENLHLDADRSKENVTVTVRFRPLSPREIRHGEEIAWYADGETI VRNEHNPSIAYAYDRVFGPTTTTRHVYDVAAQHVVNGAMEGINGTIFAYGVTSSGKTH TMHGDQRSPGIIPLAVKDAFSIIQETPNREFLLRVSYLEIYNEVVNDLLNPAGQNLRI REDAQGTFVEGIKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIES SPCGENSEGEAVNLSQLNLIDLAGSESSKAETTGVRRKEGSYINKSLLTLGTVISKLT DGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSNTEETHNTLKFAHRAKHIE IQAAQNKIIDEKSLIKKYQNEIRCLKEELEQLKRGIVTIPQLKDIGEDDIVLLKQKLE DGQVKLQSRLEQEEEAKAALLSRIQRLTKLILVSTKASQSSRFPQRPGLRRRHSFGEE ELAYLPHRRRDLILDEENVELYVSLEGNAETGDDTLKEEKKTRKHGLLNWLKLRKRDS GVGTLTSASDKSSGIKSNSTPSTPQAGRNNFRAESRLSQSLLTASSPPMDLLSDGRQD REVPEDNYIGQETPLTSIKTIDQIDLLREQQKILSGEVALHSSALKRLSEEAARNPQN EQIQVEMKKLSDEIRGKSEQIALLEKQIADSIMVSHNKMDKSEISQSIAELVAQLNEK SFELEVKAADNRIIQEQLNQKICECEGLQETVASLKQQLSDALESLNSCLQMDQEAVA SKDKSEDLLIKAQVTEIEELKQKVVELTESKEHLELRNQKLSEESSYAKGLASAAAVE LKALSEEVAKLMNHNERLAAELTAAKNSPTQRRTSTLRNGRRESLTKRNDQVGSPSDL KRELAISKERELSYEAALLEKDHREVELQRKVEESKQREAYLENELANMWVLVAKLKK SNGVDTVVSEST" CDS complement(join(29772350..29772871,29773541..29773693, 29773802..29773849,29774157..29774207,29774298..29774423, 29774508..29774648,29774911..29775141,29775954..29776112, 29776253..29776435,29777844..29777990,29778170..29778277, 29778438..29778542,29779500..29779604,29779818..29779880, 29780201..29780268,29780619..29780697,29786547..29786606, 29786757..>29786771)) /locus_tag="TCM_024960" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:28582.m000335; paralog of Thecc1EG035157t3" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 3" /protein_id="EOY09552.1" /db_xref="TAIR:AT3G12020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4J8L3" /translation="EIYNEVVNDLLNPAGQNLRIREDAQGTFVEGIKEEVVLSPAHAL SLIAAGEEHRHVGSTNFNLLSSRSHTIFTLTIESSPCGENSEGEAVNLSQLNLIDLAG SESSKAETTGVRRKEGSYINKSLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSG HGRVSLICTVTPSSSNTEETHNTLKFAHRAKHIEIQAAQNKIIDEKSLIKKYQNEIRC LKEELEQLKRGIVTIPQLKDIGEDDIVLLKQKLEDGQVKLQSRLEQEEEAKAALLSRI QRLTKLILVSTKASQSSRFPQRPGLRRRHSFGEEELAYLPHRRRDLILDEENVELYVS LEGNAETGDDTLKEEKKTRKHGLLNWLKLRKRDSGVGTLTSASDKSSGIKSNSTPSTP QAGRNNFRAESRLSQSLLTASSPPMDLLSDGRQDREVPEDNYIGQETPLTSIKTIDQI DLLREQQKILSGEVALHSSALKRLSEEAARNPQNEQIQVEMKKLSDEIRGKSEQIALL EKQIADSIMVSHNKMDKSEISQSIAELVAQLNEKSFELEVKAADNRIIQEQLNQKICE CEGLQETVASLKQQLSDALESLNSCLQMDQEAVASKDKSEDLLIKAQVVTEIEELKQK VVELTESKEHLELRNQKLSEESSYAKGLASAAAVELKALSEEVAKLMNHNERLAAELT AAKNSPTQRRTSTLRNGRRESLTKRNDQVGSPSDLKRELAISKERELSYEAALLEKDH REVELQRKVEESKQREAYLENELANMWVLVAKLKKSNGVDTVVSEST" mRNA complement(join(<29772572..29772871,29773544..29773693, 29773802..29773849,29774157..29774207,29774298..29774423, 29774508..29774648,29774911..29775141,29775954..29776112, 29776253..29776435,29777844..29777990,29778170..29778277, 29778438..29778542,29779500..29779604,29779818..29779880, 29780201..29780268,29780619..29780697,29786547..29786606, 29786757..29786810,29786891..29786956,29787722..29788477)) /locus_tag="TCM_024960" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:28582.m000335" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035157t3" /inference="similar to AA sequence:ricco:28582.m000335" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc646t11; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc722t9" CDS complement(join(<29772572..29772871,29773544..29773693, 29773802..29773849,29774157..29774207,29774298..29774423, 29774508..29774648,29774911..29775141,29775954..29776112, 29776253..29776435,29777844..29777990,29778170..29778277, 29778438..29778542,29779500..29779604,29779818..29779880, 29780201..29780268,29780619..29780697,29786547..29786606, 29786757..29786810,29786891..29786956,29787722..29787727)) /locus_tag="TCM_024960" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28582.m000335; paralog of Thecc1EG035157t3" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /protein_id="EOY09551.1" /db_xref="TAIR:AT3G12020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4J8L3" /translation="MHGDQRSPGIIPLAVKDAFSIIQETPNREFLLRVSYLEIYNEVV NDLLNPAGQNLRIREDAQGTFVEGIKEEVVLSPAHALSLIAAGEEHRHVGSTNFNLLS SRSHTIFTLTIESSPCGENSEGEAVNLSQLNLIDLAGSESSKAETTGVRRKEGSYINK SLLTLGTVISKLTDGRATHIPYRDSKLTRLLQSSLSGHGRVSLICTVTPSSSNTEETH NTLKFAHRAKHIEIQAAQNKIIDEKSLIKKYQNEIRCLKEELEQLKRGIVTIPQLKDI GEDDIVLLKQKLEDGQVKLQSRLEQEEEAKAALLSRIQRLTKLILVSTKASQSSRFPQ RPGLRRRHSFGEEELAYLPHRRRDLILDEENVELYVSLEGNAETGDDTLKEEKKTRKH GLLNWLKLRKRDSGVGTLTSASDKSSGIKSNSTPSTPQAGRNNFRAESRLSQSLLTAS SPPMDLLSDGRQDREVPEDNYIGQETPLTSIKTIDQIDLLREQQKILSGEVALHSSAL KRLSEEAARNPQNEQIQVEMKKLSDEIRGKSEQIALLEKQIADSIMVSHNKMDKSEIS QSIAELVAQLNEKSFELEVKAADNRIIQEQLNQKICECEGLQETVASLKQQLSDALES LNSCLQMDQEAVASKDKSEDLLIKAQVTEIEELKQKVVELTESKEHLELRNQKLSEES SYAKGLASAAAVELKALSEEVAKLMNHNERLAAELTAAKNSPTQRRTSTLRNGRRESL TKRNDQVGSP" mobile_element 29781143..29785162 /note="source:CACAO_M_S_E84962_F188_scaffold_7 1 4038" /mobile_element_type="retrotransposon:LTR/Copia" gene 29781143..29782060 /locus_tag="TCM_024961" /note="dbxref CacaoGD:Thecc1EG024961" mRNA 29781143..29782060 /locus_tag="TCM_024961" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30213.m000678.7" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020052t1" /note="quality class is strong-utrpoor-expresste, express is strong, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc4Loc7t11_G4" CDS 29781534..29781731 /locus_tag="TCM_024961" /note="paralog of Thecc1EG020052t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09553.1" /translation="MAESVPEKKSMVVADVIPVMTKITEHKLDGSNYLDWSKTVRLYL RSIDKDDHITNDPPTDNTRQT" gene 29782375..29783071 /locus_tag="TCM_024962" /note="dbxref CacaoGD:Thecc1EG024962" mRNA 29782375..29783071 /locus_tag="TCM_024962" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027206t1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.29 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2273t1" CDS 29782569..29782880 /locus_tag="TCM_024962" /note="paralog of Thecc1EG027206t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09554.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AWD0" /translation="MTGNSNLFFTFQSHTTSSNVTLADGSTFYVLGSGTINPTPSISL SNVLNLPKFSFNLISVSKLTSALNCCISFFPNFCLFQDLTTKRIIGTGRESEGLYYLD T" mobile_element 29785160..29785721 /note="source:INTACT259_F188_scaffold_4-int 4226 4790" /mobile_element_type="retrotransposon:LTR/Copia" gene 29785604..29786608 /locus_tag="TCM_024966" /note="dbxref CacaoGD:Thecc1EG024966" mRNA 29785604..29786608 /locus_tag="TCM_024966" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc4772t1" CDS 29785902..29786117 /locus_tag="TCM_024966" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09555.1" /translation="MFASTIYNIGHIKSIVHINFFLFSTSIFFFKAHCFKRFITFICY FFKKNYCISWTNFIQSFMYPINFVIVE" mobile_element 29800072..29801061 /note="source:INTACT639F_F363_scaffold_5-int 7457 8468" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(29802342..29810403) /locus_tag="TCM_024967" /note="dbxref CacaoGD:Thecc1EG024967" mRNA complement(join(29802342..29803225,29803645..29803824, 29803951..29804059,29804684..29805291,29805384..29805458, 29805536..29805871,29805972..29806059,29806147..29806256, 29807455..29807608,29808624..29808883,29808976..29809207, 29809298..29809329,29810134..29810403)) /locus_tag="TCM_024967" /product="Cultured cell, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:27537.m000014" /inference="similar to AA sequence:Phytozome:GSVIVT01033461001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1292t3; alternateUTRof:Thecc1EG024967t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6912t4" mRNA complement(join(29802342..29803225,29803645..29803824, 29803951..29804059,29804684..29805291,29805384..29805458, 29805536..29805871,29805972..29806059,29806147..29806256, 29807455..29807608,29808624..29808883,29808976..29809207, 29809304..29809365,29809487..29809598,29810134..29810403)) /locus_tag="TCM_024967" /product="Cultured cell, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:27537.m000014" /inference="similar to AA sequence:Phytozome:GSVIVT01033461001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1292t5; alternateUTRof:Thecc1EG024967t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6912t4" mRNA complement(join(29802573..29803225,29803645..29803824, 29803951..29804059,29804684..29805291,29805384..29805458, 29805536..29805871,29805972..29806059,29806147..29806256, 29807455..29807608,29808624..29808883,29808976..29809207, 29809304..29809365,29809487..29809588,29809797..29809866, 29810134..29810373)) /locus_tag="TCM_024967" /product="Cultured cell, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:27537.m000014" /inference="similar to AA sequence:Phytozome:GSVIVT01033461001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6912t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6912t4" CDS complement(join(29803049..29803225,29803645..29803824, 29803951..29804059,29804684..29805291,29805384..29805458, 29805536..29805871,29805972..29806059,29806147..29806256, 29807455..29807608,29808624..29808883,29808976..29809143)) /locus_tag="TCM_024967" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Cultured cell, putative isoform 1" /protein_id="EOY09556.1" /db_xref="Phytozome:GSVIVT01033461001" /db_xref="TAIR:AT3G12010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIB7" /translation="MAGKASSSQASVGGLGSGALSHVFIQYPPLRCNIPGSRGFYYDD GNKLLISSTSDQVFSWKTTPFSPLAASTTDSIDEGPICSIRFSLDEKFIAVQRSNILI QFWHRETGETFTHRCKSESENILGFFWTDCPSCDIVVVKTSGLDLFAYDYASKSLALV EARKLNVSWYVYTHESRLVLLASGMQCKTFNGLQLSSAGIIRLPKFEMVMAKSEANSK PVLASEDVYIVTVYGRIYCLQVDRVAMVLHLYRFYRDAVVQQGSLPIYSSKVAVSVVD NVLLVHQVDAKVVILYDIFADSRAPISAPLPVLLRGFPRSNISTSRPSSKESESSEAS HTNDHEAIIYGDDWTFLVPDLICDVTNKLLWKIHLDLEAISASSSEVPSVLEFLQRRK LEANKAKQLCLGITQTVILERRPVTMVAKAMDVLVTSYSHSLKTGSYLKGLKTERAPS SVPNVSGPGQGIDVFTNRTDGLGKSIQHESASRVNSVGRPSTYSSSETEDSSSVEPLK TSSNGTKFVAGKVVMGAESCTTEAQSSSFSSQFPGPSSNPLNASVSEQQESQLSSPAI SPDEMYKFVFAPIEEEMVGEPSYLVAIILEFCRSASLEKVKVHPNLYVLTIQLLARSE RYAELSLFIINKIIEPSKEVALQLLESGRQNFQIRKLGSDMLRQLSLHHDYVLLLVQD GYYLEALRYARKHKVTTIRPSLFLEAAFTSSDSQHLAAVLRFFSDFLPGFRSTTDFFT YYHILNEMNSSVAA" CDS complement(join(29803049..29803225,29803645..29803824, 29803951..29804059,29804684..29805291,29805384..29805458, 29805536..29805871,29805972..29806059,29806147..29806256, 29807455..29807608,29808624..29808883,29808976..29809143)) /locus_tag="TCM_024967" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Cultured cell, putative isoform 1" /protein_id="EOY09557.1" /db_xref="Phytozome:GSVIVT01033461001" /db_xref="TAIR:AT3G12010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIB7" /translation="MAGKASSSQASVGGLGSGALSHVFIQYPPLRCNIPGSRGFYYDD GNKLLISSTSDQVFSWKTTPFSPLAASTTDSIDEGPICSIRFSLDEKFIAVQRSNILI QFWHRETGETFTHRCKSESENILGFFWTDCPSCDIVVVKTSGLDLFAYDYASKSLALV EARKLNVSWYVYTHESRLVLLASGMQCKTFNGLQLSSAGIIRLPKFEMVMAKSEANSK PVLASEDVYIVTVYGRIYCLQVDRVAMVLHLYRFYRDAVVQQGSLPIYSSKVAVSVVD NVLLVHQVDAKVVILYDIFADSRAPISAPLPVLLRGFPRSNISTSRPSSKESESSEAS HTNDHEAIIYGDDWTFLVPDLICDVTNKLLWKIHLDLEAISASSSEVPSVLEFLQRRK LEANKAKQLCLGITQTVILERRPVTMVAKAMDVLVTSYSHSLKTGSYLKGLKTERAPS SVPNVSGPGQGIDVFTNRTDGLGKSIQHESASRVNSVGRPSTYSSSETEDSSSVEPLK TSSNGTKFVAGKVVMGAESCTTEAQSSSFSSQFPGPSSNPLNASVSEQQESQLSSPAI SPDEMYKFVFAPIEEEMVGEPSYLVAIILEFCRSASLEKVKVHPNLYVLTIQLLARSE RYAELSLFIINKIIEPSKEVALQLLESGRQNFQIRKLGSDMLRQLSLHHDYVLLLVQD GYYLEALRYARKHKVTTIRPSLFLEAAFTSSDSQHLAAVLRFFSDFLPGFRSTTDFFT YYHILNEMNSSVAA" CDS complement(join(29803049..29803225,29803645..29803824, 29803951..29804059,29804684..29805291,29805384..29805458, 29805536..29805871,29805972..29806059,29806147..29806256, 29807455..29807608,29808624..29808883,29808976..29809143)) /locus_tag="TCM_024967" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Cultured cell, putative isoform 1" /protein_id="EOY09558.1" /db_xref="Phytozome:GSVIVT01033461001" /db_xref="TAIR:AT3G12010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIB7" /translation="MAGKASSSQASVGGLGSGALSHVFIQYPPLRCNIPGSRGFYYDD GNKLLISSTSDQVFSWKTTPFSPLAASTTDSIDEGPICSIRFSLDEKFIAVQRSNILI QFWHRETGETFTHRCKSESENILGFFWTDCPSCDIVVVKTSGLDLFAYDYASKSLALV EARKLNVSWYVYTHESRLVLLASGMQCKTFNGLQLSSAGIIRLPKFEMVMAKSEANSK PVLASEDVYIVTVYGRIYCLQVDRVAMVLHLYRFYRDAVVQQGSLPIYSSKVAVSVVD NVLLVHQVDAKVVILYDIFADSRAPISAPLPVLLRGFPRSNISTSRPSSKESESSEAS HTNDHEAIIYGDDWTFLVPDLICDVTNKLLWKIHLDLEAISASSSEVPSVLEFLQRRK LEANKAKQLCLGITQTVILERRPVTMVAKAMDVLVTSYSHSLKTGSYLKGLKTERAPS SVPNVSGPGQGIDVFTNRTDGLGKSIQHESASRVNSVGRPSTYSSSETEDSSSVEPLK TSSNGTKFVAGKVVMGAESCTTEAQSSSFSSQFPGPSSNPLNASVSEQQESQLSSPAI SPDEMYKFVFAPIEEEMVGEPSYLVAIILEFCRSASLEKVKVHPNLYVLTIQLLARSE RYAELSLFIINKIIEPSKEVALQLLESGRQNFQIRKLGSDMLRQLSLHHDYVLLLVQD GYYLEALRYARKHKVTTIRPSLFLEAAFTSSDSQHLAAVLRFFSDFLPGFRSTTDFFT YYHILNEMNSSVAA" gene complement(29811137..29814672) /locus_tag="TCM_024968" /note="dbxref CacaoGD:Thecc1EG024968" mRNA complement(join(29811137..29811689,29811850..29811930, 29813238..29813678,29814118..29814672)) /locus_tag="TCM_024968" /product="Ribosomal protein S9, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400040980" /inference="similar to AA sequence:Phytozome:GSVIVT01036122001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03692t00001_C2" CDS complement(join(29811598..29811689,29811850..29811930, 29813238..29813678,29814118..29814637)) /locus_tag="TCM_024968" /codon_start=1 /product="Ribosomal protein S9, putative" /protein_id="EOY09559.1" /db_xref="Phytozome:GSVIVT01036122001" /db_xref="TAIR:AT3G49080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RIU9" /translation="MLSRLLPKPSHFRLLPLLSSKSQPYPYSPQHPPISLLRFLSTNQ NNNNDNKKDQSFSNPWKISPDNDGKFDSLFSDESGNLAGFSSVTESPTAAGEEDGGAG KKSGEGDWLVGEEDKAWSFGEEEKGDGVFDLKGVRDFVETGGETSVAQSDDSVEEQKN FEEEEKQLTAVLKGPNRAFGDLIAASGITDAMLDSLIALKDLEGVDGLPPLSVIEDMR YEKNTRKSMRAEIELLKMEEIAKARVRQVDDKGRAYGTGRRKCSVARVWVQPGDGKFI INDKQFDVYFPMLDHRAALLRPFSETKTLGLWDINCTVKGGGVTGQVGAIQLGISRAL QNFEPELRPPLRAAGFLTRDPRVVERKKPGKAKARKSFQWVKR" mobile_element complement(29818221..29821188) /note="source:CACAO_M_E69760_F9_scaffold_9 6706 9648" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 29820956..29821226 /note="source:CACAO_M_E35176_F7_scaffold_5 12924 13190" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 29827479..29827656 /note="source:CACAO_on_S_E390_scaffold_9 2168 2355" /mobile_element_type="transposon:TIR/Mutator" mobile_element 29829195..29831232 /note="source:INTACT477_F225_scaffold_9-int 755 2765" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 29831881..29833906 /note="source:INTACT477_F225_scaffold_9-int 2800 4843" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(29842057..29842163) /note="source:scaffold_3_CACTA_0382 1850 1935" /mobile_element_type="transposon:TIR/CACTA" gene 29845292..29846540 /locus_tag="TCM_024971" /note="dbxref CacaoGD:Thecc1EG024971" mRNA 29845292..29846540 /locus_tag="TCM_024971" /product="C2H2 and C2HC zinc fingers superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:27574.m000230" /inference="similar to AA sequence:ricco:27574.m000230" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1010t1" CDS 29845466..29846182 /locus_tag="TCM_024971" /note="dbxref ricco:27574.m000230" /codon_start=1 /product="C2H2 and C2HC zinc fingers superfamily protein, putative" /protein_id="EOY09560.1" /db_xref="TAIR:AT2G41940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIB9" /translation="MEKNERETHDFMNVESFSQLPFIRPAPIKEKGIRLFGKEFGGDS ATASNESESAENNEDTTKENENGDNSRRFECHYCCRNFPTSQALGGHQNAHKRERQHA KRAHLQSAMVHNSLSDAHIYGLVNYRLGSAPTPAMTYPSWNNSISSSSSRFYGNHGSF SQPPINGSPLGLWRIPATVQSNSSFNRDRSSSHPLPLFAGDELKPSQVVGGGGSSSQS RYVYESKSGVQDHVSLDLHL" mobile_element complement(29847202..29847252) /note="source:CACAO_M_E49556_F134_scaffold_7 2040 2091" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 29847393..29847455 /note="source:scaffold_3_CACTA_0382 1855 1918" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29847414..29847479) /note="source:scaffold_3_CACTA_0382 1852 1918" /mobile_element_type="transposon:TIR/CACTA" gene 29847548..29852376 /locus_tag="TCM_024972" /note="dbxref CacaoGD:Thecc1EG024972" mRNA join(29847548..29848004,29850701..29850747, 29851575..29852376) /locus_tag="TCM_024972" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.54 coverage" CDS join(29847893..29848004,29850701..29850747, 29851575..29851646) /locus_tag="TCM_024972" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09561.1" /translation="MKEHTNMAVKSAIFIFSPFICTLAFMSAREIEREGELGMHRPLC FEVNSNPDEAMWEDPLALFGYLCTCKGAFEDR" gene complement(29854053..29858672) /locus_tag="TCM_024973" /note="dbxref CacaoGD:Thecc1EG024973" mRNA complement(join(29854053..29854376,29854453..29854557, 29855195..29855259,29856557..29856617,29856971..29857016, 29857167..29857225,29857300..29857351,29857808..29857963, 29858322..29858372,29858470..29858672)) /locus_tag="TCM_024973" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:27574.m000229" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g11496t00001_C1" CDS complement(join(29854243..29854376,29854453..29854557, 29855195..29855259,29856557..29856617,29856971..29857016, 29857167..29857225,29857300..29857351,29857808..29857963, 29858322..29858372,29858470..29858595)) /locus_tag="TCM_024973" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09562.1" /db_xref="TAIR:AT2G41945.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F4ILY0" /translation="MGTREVYEEKLRHGNLYHDPTINPGLGSARCPRCLSLLNPDSDK AEWTITSVLHDATAVVPILKWVGLGFMGGERATFHCVAQAHWAFTCIKRKKKGQVVGT YACWDMSFEAGSGIGGMLSAVHGFNTGIPFLQNRIKGPKWLPFVTGIPLLLMFSGVSA AFGGKTLHYGVPSVACSCFCLLPKLQCAGKSPSPSFGKGQSLPLLVTQFDDLGRLCIR LGLKVHFTSNDYSGSVPIMRTRCYALPKFAQLTVTSYYAASSASHYGISLLTRHVEKT YTTRSQQG" gene 29859047..29859933 /locus_tag="TCM_024974" /note="dbxref CacaoGD:Thecc1EG024974" mRNA 29859047..29859933 /locus_tag="TCM_024974" /product="Disease resistance-responsive (dirigent-like protein) family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06090.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024985t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s06100.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc5957t1" CDS 29859238..29859822 /locus_tag="TCM_024974" /note="paralog of Thecc1EG024985t1" /codon_start=1 /product="Disease resistance-responsive (dirigent-like protein) family protein, putative" /protein_id="EOY09563.1" /db_xref="Phytozome:POPTR_0016s06100.1" /db_xref="TAIR:AT5G49040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIC2" /translation="MAKLLLQHSFTISFLLIILSFFSTFATIESKHFSRSLSPSSLGL KREKLSHLHFYFHDIVAAKNPTAMRVAQANTTSASSPFGAVVMIDDPLTVDPDINSKP VGKAQGIYALASQSDASLLMAYNFAFMEGKYNGSNLSLLGRNTVFSPVREMPIVGGSG VFRLARGYAEARTHTFDLKTGNTVVEYNVYVFHY" mobile_element 29860146..29860599 /note="source:scaffold_5_CACTA_0612 13343 13773" /mobile_element_type="transposon:TIR/CACTA" mobile_element 29862132..29862504 /note="source:scaffold_5_CACTA_0612 13918 14259" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29862491..29864376) /note="source:scaffold_9_CACTA_0946 1 1890" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29867339..29867585) /note="source:scaffold_9_CACTA_0946 1575 1868" /mobile_element_type="transposon:TIR/CACTA" mobile_element 29867589..29867647 /note="source:scaffold_5_CACTA_0612 14263 14321" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(29870036..29872937) /note="source:INTACT162_F157_scaffold_6-int 8008 10950" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 29873053..29889985 /note="source:scaffold_5_CACTA_0612 1 16933" /mobile_element_type="transposon:TIR/CACTA" mobile_element 29891451..29892253 /note="source:CACAO_M_E44085_F2_scaffold_5 1 803" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 29894930..29894986 /note="source:scaffold_5_CACTA_0612 13903 13959" /mobile_element_type="transposon:TIR/CACTA" gene 29895038..29895946 /locus_tag="TCM_024981" /note="dbxref CacaoGD:Thecc1EG024981" mRNA 29895038..29895946 /locus_tag="TCM_024981" /product="Disease resistance-responsive family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0378s00200.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024984t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s20990.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc411t1_C1" CDS 29895161..29895748 /locus_tag="TCM_024981" /note="paralog of Thecc1EG024984t1" /codon_start=1 /product="Disease resistance-responsive family protein" /protein_id="EOY09564.1" /db_xref="Phytozome:POPTR_0006s20990.1" /db_xref="TAIR:AT5G49040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9Z8" /translation="MATMLTTQSSIFFLILFTIISFSALAIAQQSDEVFSRYISPSSL GLKQEKLSHLHFYFHDIVSGKNSTAVRVAEAPSTNSSSSFFGAVVMMDDPLTIKPDVN SKMVGRAQGIYAFASQTDFSLLMVLNFVFTQGKYNGSTLSVLGRNKVVSTVREMPIVG GSGVFRFARGYAQARTYSNSQTDSIVEYNVYVFHY" mobile_element 29895162..29895485 /note="source:scaffold_5_CACTA_0612 13998 14321" /mobile_element_type="transposon:TIR/CACTA" mobile_element 29897679..29897739 /note="source:CACAO_M_E85275_F302_scaffold_10 1672 1732" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 29898741..29902277 /locus_tag="TCM_024982" /note="dbxref CacaoGD:Thecc1EG024982" mRNA join(29898741..29898865,29900138..29900184, 29901797..29902277) /locus_tag="TCM_024982" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038827t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.23 coverage" CDS join(29898847..29898865,29900138..29900184, 29901797..29902162) /locus_tag="TCM_024982" /note="paralog of Thecc1EG038827t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09565.1" /translation="MVHRRLVKLPMEILSVGETNAKKSYVLTLSQKYGDVIWIQSKFD LEAWIEVIGRSNITRTHVYDFGTIVPASRLLTLETTCESTCGHGITRPPLPPTLEPKG YQQLFSNVGFLMTSVGNINNLLEVIASRLPPSNTFGSSTSQ" gene complement(29899018..29899833) /locus_tag="TCM_024983" /note="dbxref CacaoGD:Thecc1EG024983" mRNA complement(29899018..29899833) /locus_tag="TCM_024983" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008391001" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.36 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2103t1" CDS complement(29899339..29899692) /locus_tag="TCM_024983" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09566.1" /translation="MAYSSGNSFSWEPGQARGWESSLEGVKSKVQNEWSMFHERLLER KKFFCSIFTKVPSSSPQFVHVLSHLICVRVRCWILCFYFILDDSKFNVFIERGIIFDC RKGRTYRWTYLFTFE" mobile_element complement(29900791..29900935) /note="source:scaffold_8_CACTA_0858 14557 14700" /mobile_element_type="transposon:TIR/CACTA" gene complement(29902431..29906157) /locus_tag="TCM_024984" /note="dbxref CacaoGD:Thecc1EG024984" mRNA complement(join(29902431..29902504,29905380..29906157)) /locus_tag="TCM_024984" /product="Disease resistance-responsive family protein" /inference="alignment:exonerate- protein:2:ricco:27574.m000228" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024991t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033451001" /note="quality class is strong, express is medium, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1781t1" CDS complement(29905400..29905993) /locus_tag="TCM_024984" /note="paralog of Thecc1EG024991t1" /codon_start=1 /product="Disease resistance-responsive family protein" /protein_id="EOY09567.1" /db_xref="Phytozome:GSVIVT01033451001" /db_xref="TAIR:AT5G49040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9Z8" /translation="MAKTQLQKLTATSFLILTFTILFSLTLATAKSHRFSRSISPETL GLKKEKLSHFHFYFHDVLSGPRPTAVRVASATMTNTSATLFGSMVMMDNPLTVAPEFD SKLVGRAQGIYASASQTEVGLLMVLNIAFTQGKYNGSVLSVLGRNPVFSTVREMPIVG GSGLFRFARGYAQAKTHSVDLNTGDAVVEYNVYVFHY" mobile_element 29906949..29907142 /note="source:CACAO_Mutator_E206_scaffold_1 9727 9924" /mobile_element_type="transposon:TIR/Mutator" mobile_element 29907578..29907778 /note="source:CACAO_Mutator_E206_scaffold_1 10480 10696" /mobile_element_type="transposon:TIR/Mutator" mobile_element 29913820..29913866 /note="source:CACAO_Mutator_E206_scaffold_1 10501 10548" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(29914495..29914671) /note="source:CACAO_Mutator_E206_scaffold_1 9747 9924" /mobile_element_type="transposon:TIR/Mutator" gene complement(29915397..29916372) /locus_tag="TCM_024985" /note="dbxref CacaoGD:Thecc1EG024985" mRNA complement(29915397..29916372) /locus_tag="TCM_024985" /product="Disease resistance-responsive family protein" /inference="alignment:exonerate- protein:2:ricco:27574.m000228.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024991t1" /inference="similar to AA sequence:ricco:27574.m000228" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.40 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc841t13" CDS complement(29915760..29916350) /locus_tag="TCM_024985" /note="dbxref ricco:27574.m000228; paralog of Thecc1EG024991t1" /codon_start=1 /product="Disease resistance-responsive family protein" /protein_id="EOY09568.1" /db_xref="TAIR:AT5G49040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9Z8" /translation="MAKTLSELLSSTSLFLFTLLFFSTTLASTKSNGFSNILSPAKLG LKQEKLSHLHFYFHDIVSGRKPSAVRVASAAMTNKSETGFGAVVMADDPLTVAPERNS KLVGKAQGIYASAAQDEVGLLMVMNFAFTEGKYNGSSLSLLGRNTVFWTVREMPIVGG SGLFRFARGYAQAKTHTFDTKTGDAVVEYNVYVFHY" gene 29919605..29921583 /locus_tag="TCM_024986" /note="dbxref CacaoGD:Thecc1EG024986" mRNA join(29919605..29919976,29921119..29921583) /locus_tag="TCM_024986" /product="Translation protein SH3-like family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024987t2" /inference="similar to AA sequence:Phytozome:Sb01g019840.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc496t3" gene 29919701..29951944 /locus_tag="TCM_024987" /note="dbxref CacaoGD:Thecc1EG024987" mRNA join(29919701..29919772,29950554..29950769, 29951497..29951943) /locus_tag="TCM_024987" /product="60S ribosomal protein L21 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s21010.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021775t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s06110.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00104t00003_C2; inference alignment:Newbler:10:TSA:cgbaP2_g00104t00003_C2" CDS join(29919752..29919772,29950554..29950769, 29951497..29951754) /locus_tag="TCM_024987" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG021775t1" /codon_start=1 /product="60S ribosomal protein L21 isoform 1" /protein_id="EOY09570.1" /db_xref="Phytozome:POPTR_0016s06110.1" /db_xref="TAIR:AT1G09690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9AV87" /translation="MPAGHGLRARTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDIKV NGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVQPSRCT EEFKLRKVKNDQLKAEAKAKGEVISTKRQPEGPKPGFMVEGATLETVTPIPYDVVNDL KGGY" CDS join(29919752..29919976,29921119..29921301) /locus_tag="TCM_024986" /note="paralog of Thecc1EG024987t2" /codon_start=1 /product="Translation protein SH3-like family protein, putative" /protein_id="EOY09569.1" /db_xref="Phytozome:Sb01g019840.1" /db_xref="TAIR:AT1G09690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q43291" /translation="MPAGHGLCARTRDLFARPFREKGYIPLSTYLRTYKIGDYVDIKV NGAVHKVMPHKFYHGCTGRVWNVTKRAIGVEGNGVEAVSAFWGVTPYISSTVRETPIV GGSGLFRFARGYAEARTHSREAKTRSCVYVFHY" mobile_element complement(29921918..29926987) /note="source:INTACT697_F302_scaffold_2-int 11799 16899" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 29926978..29927358 /note="source:scaffold_3_CACTA_0382 2010 2387" /mobile_element_type="transposon:TIR/CACTA" mobile_element 29927359..29930292 /note="source:CACAO_M_E44086_F33_scaffold_5 1 2934" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(29930909..29931530) /locus_tag="TCM_024988" /note="dbxref CacaoGD:Thecc1EG024988" mRNA complement(29930909..29931530) /locus_tag="TCM_024988" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003754t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(29931276..29931500) /locus_tag="TCM_024988" /note="paralog of Thecc1EG003754t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09572.1" /translation="MFRSNGSQNALHSTSERSLDSTARSQWRPSPGSQESGQSRILIG WIPPGLEIMFRSGKNLESSESLGSEDNTEI" mobile_element 29931743..29934689 /note="source:CACAO_M_S_E124255_F302_scaffold_10 1 2931" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 29939051..29939902 /locus_tag="TCM_024990" /note="dbxref CacaoGD:Thecc1EG024990" mRNA 29939051..29939902 /locus_tag="TCM_024990" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:frave:gene03340.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040824t1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc8793t1" CDS 29939518..29939814 /locus_tag="TCM_024990" /note="paralog of Thecc1EG040824t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09573.1" /translation="MVRDDVGPKVTFNHGYENESRFVEEDLNPNASSFYSLLSNAKEP LWSGCTKHTTLSAVSQLLNVKLKYNLSESCFVRLLEIIKNMLPSDEIYLLTFIE" gene complement(29946398..29947220) /locus_tag="TCM_024991" /note="dbxref CacaoGD:Thecc1EG024991" mRNA complement(29946398..29947220) /locus_tag="TCM_024991" /product="Disease resistance-responsive family protein" /inference="alignment:exonerate-protein:2:frave:gene35072" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024985t1" /inference="similar to AA sequence:ricco:27574.m000228" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.70 coverage" CDS complement(29946583..29947173) /locus_tag="TCM_024991" /note="dbxref ricco:27574.m000228; paralog of Thecc1EG024985t1" /codon_start=1 /product="Disease resistance-responsive family protein" /protein_id="EOY09574.1" /db_xref="TAIR:AT1G65870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9Z8" /translation="MAKTLSELLSSTSLFLFTLLFFSTTLASTKSNGFSNILSPAKLG LKQEKLSHLHFYFHDIVSGPKPSAVRVASAAMTNKSATGFGAVVIIDDPLTVAPERNS KLVGKAQGIYASAAQDEFGLLMVMNFAFTKGKYNGSSLSLLGRNTVFSTVREMPIVGG SGLFRFARGYAQAKTHTFDTKTGDTVVEYNVYVFHY" mRNA join(29950476..29950769,29951497..29951944) /locus_tag="TCM_024987" /product="60S ribosomal protein L21 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene18049" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s21010.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021775t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s06110.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Newbler:10:TSA:cgbaL_g08390t00001; alternateUTRof:Thecc1EG024987t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14399t1; inference alignment:Newbler:10:TSA:cgbaP2_g00104t00003_C2" CDS join(29950533..29950769,29951497..29951754) /locus_tag="TCM_024987" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG021775t1" /codon_start=1 /product="60S ribosomal protein L21 isoform 1" /protein_id="EOY09571.1" /db_xref="Phytozome:POPTR_0016s06110.1" /db_xref="TAIR:AT1G09690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9AV87" /translation="MPAGHGLRARTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDIKV NGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVQPSRCT EEFKLRKVKNDQLKAEAKAKGEVISTKRQPEGPKPGFMVEGATLETVTPIPYDVVNDL KGGY" gene 29952686..29953891 /locus_tag="TCM_024992" /note="dbxref CacaoGD:Thecc1EG024992" mRNA join(29952686..29952759,29953058..29953184, 29953589..29953891) /locus_tag="TCM_024992" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g39220.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s21020.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2169t1" CDS join(29952730..29952759,29953058..29953184, 29953589..29953788) /locus_tag="TCM_024992" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09575.1" /db_xref="Phytozome:POPTR_0006s21020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9Z5" /translation="MGMGLLTMHLQATALKVSQILQSKSWESGPPGRLKMRISWMFFS LLLLLLASAEFGPALATRGVYAARIPEHTCHKVIGTSICELQKCIQECSKEPAGAGDC RDNICYCSYYCKDPPM" gene <29953739..29959295 /locus_tag="TCM_024993" /note="dbxref CacaoGD:Thecc1EG024993" mRNA join(<29953739..29953768,29959005..29959295) /locus_tag="TCM_024993" /product="Low-molecular-weight cysteine-rich 16, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g39220.1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06160.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is none, intron is medium, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc4621t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6920t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2169t1" CDS join(<29953739..29953768,29959005..29959199) /locus_tag="TCM_024993" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Low-molecular-weight cysteine-rich 16, putative isoform 2" /protein_id="EOY09577.1" /translation="ETTFVIAHTTLPWRCVKSMGKKSAMAKFLVMVLAMLELAATNVL NPSKAVLELALKLSSTVSLVNVPGLAASDQ" mRNA join(29958791..29958887,29959005..29959288) /locus_tag="TCM_024993" /product="Low-molecular-weight cysteine-rich 16, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06160.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6920t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6920t1" CDS join(29958830..29958887,29959005..29959189) /locus_tag="TCM_024993" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Low-molecular-weight cysteine-rich 16, putative isoform 1" /protein_id="EOY09576.1" /translation="MSKLSNCNNIFFAILLIVSVALAMRQVHGQEICHGQIPGNGSCD AGTCSNQCAQSFQGSVGTCTQTFINRFTCQCSWSCS" mobile_element complement(29960796..29961025) /note="source:scaffold_10_CACTA_0130 7929 8158" /mobile_element_type="transposon:TIR/CACTA" gene complement(29961096..29961722) /locus_tag="TCM_024994" /note="dbxref CacaoGD:Thecc1EG024994" mRNA complement(join(29961096..29961451,29961577..29961722)) /locus_tag="TCM_024994" /product="Low-molecular-weight cysteine-rich 16, putative" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6924t1" CDS complement(join(29961255..29961451,29961577..29961628)) /locus_tag="TCM_024994" /codon_start=1 /product="Low-molecular-weight cysteine-rich 16, putative" /protein_id="EOY09578.1" /translation="MAKLPCNIVMVRFSFILVTLMMCGAVQGQEVCHDVLPAPGGGQC DPQSCKDKCASKHGGTGLCVQDFENLYSCQCSWPCGKR" mobile_element 29962865..29964459 /note="source:CACAO_M_E45544_F3_scaffold_6 1 1595" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(29965725..29966972) /note="source:CACAO_Mutator_E1430_scaffold_6 293 1494" /mobile_element_type="transposon:TIR/Mutator" mobile_element 29968834..29968973 /note="source:CACAO_M_S_E89247_F225_scaffold_8 4162 4339" /mobile_element_type="retrotransposon:LTR/Copia" gene 29971273..29978395 /locus_tag="TCM_024996" /note="dbxref CacaoGD:Thecc1EG024996" mRNA join(29971273..29971766,29971925..29972169, 29973873..29974626,29975210..29975296,29975381..29975464, 29975542..29975628,29975723..29975809,29976852..29976905, 29976996..29977087,29977194..29977308,29977504..29977648, 29977800..29977954,29978051..29978271) /locus_tag="TCM_024996" /product="DNAse I-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06170.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034910t1" /inference="similar to AA sequence:ricco:27574.m000224" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04980t00001" CDS join(29972012..29972169,29973873..29974626, 29975210..29975296,29975381..29975464,29975542..29975628, 29975723..29975809,29976852..29976905,29976996..29977087, 29977194..29977308,29977504..29977648,29977800..29977945) /locus_tag="TCM_024996" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:27574.m000224; paralog of Thecc1EG034910t1" /codon_start=1 /product="DNAse I-like superfamily protein isoform 1" /protein_id="EOY09579.1" /db_xref="TAIR:AT3G58560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M2F8" /translation="MLSVLRVHLPSDIPIVGCELTPYVLLRRPDKSVTTDDVPELAPL DGHFLRYKWYRIQSDRKVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAW QHHRVLHDRAASAVNENGNEEEEIFGRFNSSGSGVINASLTGSASSTSLTNGSTPLYP AAVTQRSGGETWFEVGRSKTYTPTADDIGHVLKFECVVVDVETKLPVGHPNTILTSRV IPAPSPSPRRLIPVSGADMMGHLDSDGRISSSGTFTVLSYNILSDSYASSELYSYCPS WALSWPYRRQNLLREIVGYRADIVCLQEVQSDHFEEFFAPELDKHGYQALYKRKTNEV YTGNTHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTEVAVQTTQKKAALNRLVKDN VALIVVLEAKFSNQGADNPGKRQLLCVANTHVNVQQELKDVKIWQVHTLLKGLEKIAA SADIPMLVCGDFNSVPGSAPHSLLAMGKVDPLHPDLLIDPLAILRPHSKLTHQLPLVS AYSSFARGVGLGLEQQRRRMDPTTNEPLFTNCTRDFIGTLDYIFYTADSLTVESLLEL LDEDSLRKDTALPSPEWSSDHIALLAEFRCMPRPRR" mRNA join(<29972138..29972160,29973873..29974626, 29975210..29975296,29975381..29975464,29975542..29975628, 29975723..29975809,29976852..29976905,29976996..29977087, 29977194..29977213,29977840..29977954,29978051..29978395) /locus_tag="TCM_024996" /product="DNAse I-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06170.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034910t3" /inference="similar to AA sequence:ricco:27574.m000224" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc110t13; inference alignment:Newbler:10:TSA:cgbaB_g04980t00001" CDS join(<29972138..29972160,29973873..29974626, 29975210..29975296,29975381..29975464,29975542..29975628, 29975723..29975809,29976852..29976905,29976996..29977087, 29977194..29977213,29977840..29977853) /locus_tag="TCM_024996" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:27574.m000224; paralog of Thecc1EG034910t3" /codon_start=1 /product="DNAse I-like superfamily protein isoform 2" /protein_id="EOY09580.1" /db_xref="TAIR:AT3G58560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q338D5" /translation="PLDGHFLRYRIQSDRKVAVCSVHPSEQATLQCLGCVKAKIPVAK SYHCSPKCFSDAWQHHRVLHDRAASAVNENGNEEEEIFGRFNSSGSGVINASLTGSAS STSLTNGSTPLYPAAVTQRSGGETWFEVGRSKTYTPTADDIGHVLKFECVVVDVETKL PVGHPNTILTSRVIPAPSPSPRRLIPVSGADMMGHLDSDGRISSSGTFTVLSYNILSD SYASSELYSYCPSWALSWPYRRQNLLREIVGYRADIVCLQEVQSDHFEEFFAPELDKH GYQALYKRKTNEVYTGNTHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTEVAVQTT QKKAALNRLVKDNVALIVVLEAKFSNQGADNPGKRQLLCVANTHVNVQQELKDVKIWQ VHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHSLLARIA" mRNA join(<29972138..29972160,29973873..29974626, 29975210..29975296,29975381..29975464,29975542..29975628, 29975723..29975809,29976852..29976905,29976996..29977087, 29977194..29977308,29977504..>29977542) /locus_tag="TCM_024996" /product="DNAse I-like superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06170.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034910t3" /inference="similar to AA sequence:ricco:27574.m000224" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc110t14; inference alignment:Newbler:10:TSA:cgbaB_g04980t00001" CDS join(<29972138..29972160,29973873..29974626, 29975210..29975296,29975381..29975464,29975542..29975628, 29975723..29975809,29976852..29976905,29976996..29977087, 29977194..29977308,29977504..>29977542) /locus_tag="TCM_024996" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:27574.m000224; paralog of Thecc1EG034910t3" /codon_start=1 /product="DNAse I-like superfamily protein isoform 3" /protein_id="EOY09581.1" /db_xref="TAIR:AT3G58560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q338D5" /translation="PLDGHFLRYRIQSDRKVAVCSVHPSEQATLQCLGCVKAKIPVAK SYHCSPKCFSDAWQHHRVLHDRAASAVNENGNEEEEIFGRFNSSGSGVINASLTGSAS STSLTNGSTPLYPAAVTQRSGGETWFEVGRSKTYTPTADDIGHVLKFECVVVDVETKL PVGHPNTILTSRVIPAPSPSPRRLIPVSGADMMGHLDSDGRISSSGTFTVLSYNILSD SYASSELYSYCPSWALSWPYRRQNLLREIVGYRADIVCLQEVQSDHFEEFFAPELDKH GYQALYKRKTNEVYTGNTHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTEVAVQTT QKKAALNRLVKDNVALIVVLEAKFSNQGADNPGKRQLLCVANTHVNVQQELKDVKIWQ VHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHSLLAMGKVDPLHPDLLIDPLAILR PHSKLTHQLPLVSAYSSFARGVGL" gene 29978512..29980012 /locus_tag="TCM_024997" /note="dbxref CacaoGD:Thecc1EG024997" mRNA join(29978512..29979195,29979397..29979489, 29979670..29980012) /locus_tag="TCM_024997" /product="Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s21040.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005951t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s21040.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc573t1" CDS join(29978790..29979195,29979397..29979489, 29979670..29979788) /locus_tag="TCM_024997" /note="paralog of Thecc1EG005951t1" /codon_start=1 /product="Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein, putative" /protein_id="EOY09582.1" /db_xref="Phytozome:POPTR_0006s21040.1" /db_xref="TAIR:AT3G58550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TNT3" /translation="MYITHFPYNLKRTSLLTSPYLSVMGVLSSVRSTLFCFIFLILLS WVSSDWAEDKKECSNQLVALSTCIPFVGGNTKVPDSTCCTNLRKKINQTKKCLCLLVA DRNDPDLGFKVNATLALILPSICHAPSNASECPELLHLPPNSTDAQVFEQFAATFEEG NSSAVDVTGTSTSSSCSVREEGWVGVWKIGRILTWQLLSIYIIDM" gene complement(29980166..29981487) /locus_tag="TCM_024998" /note="dbxref CacaoGD:Thecc1EG024998" mRNA complement(join(29980166..29980617,29981187..29981487)) /locus_tag="TCM_024998" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.62 coverage" CDS complement(join(29980353..29980617,29981187..29981218)) /locus_tag="TCM_024998" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09583.1" /translation="MVMFFSTFYSMPTNDILYSNQPPRNRICLRSDRISQRAPTLVLS REHRYPKTTGSVLPGEHTRMVLPKEHHVGCSSGSIDPWSQIGASQARPGEGGRI" mobile_element complement(29981451..29982747) /note="source:INTACT477_F225_scaffold_9-int 3452 5953" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 29983844..29984508 /note="source:CACAO_on_E34_scaffold_5 1 665" /mobile_element_type="transposon:TIR/hAT" gene 29984943..29985567 /locus_tag="TCM_024999" /note="dbxref CacaoGD:Thecc1EG024999" mRNA join(29984943..29985242,29985344..29985567) /locus_tag="TCM_024999" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028903t3" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.54 coverage" CDS join(29985125..29985242,29985344..29985522) /locus_tag="TCM_024999" /note="paralog of Thecc1EG028903t3" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09584.1" /translation="MSSVCCTSDLDELNGVAEENASSNSNVISSCSNEDIGNEYLKSS LEADHVVHNKDFEDGLQKELVHNAAVGVVLKSTNGVESESVQKTMIRLSSKSTA" gene complement(29985573..29992118) /locus_tag="TCM_025000" /note="dbxref CacaoGD:Thecc1EG025000" mRNA complement(join(29985573..29986144,29987604..29987672, 29987781..29987848,29987931..29988003,29988091..29988177, 29988497..29988567,29989490..29989565,29989679..29989809, 29991465..29991548,29991714..29991773,29991883..29992118)) /locus_tag="TCM_025000" /product="RNI-like superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s21050.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s21050.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:PASA:2:TSA:puevd3b024185t1a3; inference alignment:Newbler:10:TSA:cgbaB_g00997t00001" mRNA complement(join(29985573..29986144,29986690..29986781, 29987604..29987672,29987781..29987848,29987931..29988003, 29988091..29988177,29988497..29988567,29989490..29989565, 29989679..29989809,29991465..29991548,29991714..29991773, 29991883..29992118)) /locus_tag="TCM_025000" /product="RNI-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s21050.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s21050.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:PASA:2:TSA:puevd3b024185t1a2; inference alignment:Newbler:10:TSA:cgbaB_g00997t00001" mRNA complement(join(29985573..29986144,29986690..29986795, 29987604..29987672,29987781..29987848,29987931..29988003, 29988091..29988177,29988497..29988567,29989490..29989565, 29989679..29989809,29991465..29991548,29991714..29991773, 29991883..29992118)) /locus_tag="TCM_025000" /product="RNI-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s21050.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s21050.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00997t00001" CDS complement(join(29986079..29986144,29986690..29986795, 29987604..29987672,29987781..29987848,29987931..29988003, 29988091..29988177,29988497..29988567,29989490..29989565, 29989679..29989809,29991465..29991548,29991714..29991773, 29991883..29992041)) /locus_tag="TCM_025000" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="RNI-like superfamily protein isoform 1" /protein_id="EOY09585.1" /db_xref="Phytozome:POPTR_0006s21050.1" /db_xref="TAIR:AT3G58530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LB33" /translation="MEGEEQTSLWNKETVPKVMKIVSTRLPQRDLISLLLVSPWLHRT LLSSPSLWLAIDLREMNNAGDRLIAAVSLPRYQHVKQISLEFARDIDDGHLEILKNKC LDSLQGLESLNLNGCQKISDKGIEAITSCCHKLKVFSIYWNVRATDIGVKHLVTNCKH IIDLNLSGCKNLSERSLQLVADHYQELESLNLTRCVKMTDSGLQQILIRCSFLRSLNL YALSSFTDETYKKISVLSHLRFLDLCGAQNLSDEGLSCIAKCKNLVSLNLTWCVRVTD MGVIAIAEGCTSLEFLSLFGIVGVTDKCLEALSKFCSNTITTLDVNGCIGIKRRSRDD LLQLFPYLSCFKVHS" CDS complement(join(29986102..29986144,29987604..29987672, 29987781..29987848,29987931..29988003,29988091..29988177, 29988497..29988567,29989490..29989565,29989679..29989809, 29991465..29991548,29991714..29991773,29991883..29992041)) /locus_tag="TCM_025000" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="RNI-like superfamily protein isoform 3" /protein_id="EOY09587.1" /db_xref="Phytozome:POPTR_0006s21050.1" /db_xref="TAIR:AT3G58530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LB33" /translation="MEGEEQTSLWNKETVPKVMKIVSTRLPQRDLISLLLVSPWLHRT LLSSPSLWLAIDLREMNNAGDRLIAAVSLPRYQHVKQISLEFARDIDDGHLEILKNKC LDSLQGLESLNLNGCQKISDKGIEAITSCCHKLKVFSIYWNVRATDIGVKHLVTNCKH IIDLNLSGCKNLSERSLQLVADHYQELESLNLTRCVKMTDSGLQQILIRCSFLRSLNL YALSSFTDETYKKISVLSHLRFLDLCGAQNLSDEGLSCIAKCKNLVSLNLTWCVRVTD MGVIAIAEGCTSLEFLRDEAVMIYSSCSHI" mRNA complement(join(<29986117..29986144,29986690..29986795, 29987604..29987672,29987781..29987848,29987931..29988003, 29988091..29988177,29988497..29988567,29989684..29989809, 29991465..29991548,29991714..29991773, 29991883..>29992033)) /locus_tag="TCM_025000" /product="RNI-like superfamily protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s21050.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s21050.1" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1566t2; inference alignment:Newbler:10:TSA:cgbaB_g00997t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1903t5_C1" CDS complement(join(<29986118..29986144,29986690..29986795, 29987604..29987672,29987781..29987848,29987931..29988003, 29988091..29988177,29988497..29988567,29989684..29989809, 29991465..29991548,29991714..29991773, 29991883..>29992032)) /locus_tag="TCM_025000" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="RNI-like superfamily protein isoform 4" /protein_id="EOY09588.1" /db_xref="Phytozome:POPTR_0006s21050.1" /db_xref="TAIR:AT3G58530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LB33" /translation="EEQTSLWNKETVPKVMKIVSTRLPQRDLISLLLVSPWLHRTLLS SPSLWLAIDLREMNNAGDRLIAAVSLPRYQHVKQISLEFARDIDDGHLEILKNKCLDS LQGLESLNLNGCQKISDKGIEAITSCCHKLKVFSIYWNNLSERSLQLVADHYQELESL NLTRCVKMTDSGLQQILIRCSFLRSLNLYALSSFTDETYKKISVLSHLRFLDLCGAQN LSDEGLSCIAKCKNLVSLNLTWCVRVTDMGVIAIAEGCTSLEFLSLFGIVGVTDKCLE ALSKFCSNTITTLDVNGCIGIKRRSRDDLLQ" CDS complement(join(29986769..29986781,29987604..29987672, 29987781..29987848,29987931..29988003,29988091..29988177, 29988497..29988567,29989490..29989565,29989679..29989809, 29991465..29991548,29991714..29991773,29991883..29992041)) /locus_tag="TCM_025000" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="RNI-like superfamily protein isoform 2" /protein_id="EOY09586.1" /db_xref="Phytozome:POPTR_0006s21050.1" /db_xref="TAIR:AT3G58530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LB33" /translation="MEGEEQTSLWNKETVPKVMKIVSTRLPQRDLISLLLVSPWLHRT LLSSPSLWLAIDLREMNNAGDRLIAAVSLPRYQHVKQISLEFARDIDDGHLEILKNKC LDSLQGLESLNLNGCQKISDKGIEAITSCCHKLKVFSIYWNVRATDIGVKHLVTNCKH IIDLNLSGCKNLSERSLQLVADHYQELESLNLTRCVKMTDSGLQQILIRCSFLRSLNL YALSSFTDETYKKISVLSHLRFLDLCGAQNLSDEGLSCIAKCKNLVSLNLTWCVRVTD MGVIAIAEGCTSLEFLSWGN" mobile_element 29992106..29993098 /note="source:INTACT135F_F90_scaffold_2-int 12859 14004" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 29993101..29994219 /note="source:scaffold_10_CACTA_0140 6108 7236" /mobile_element_type="transposon:TIR/CACTA" mobile_element 29993730..29994225 /note="source:CACAO_M_E4753_F17_scaffold_2 7256 7755" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 29995345..29996543 /note="source:CACAO_on_S_E46_scaffold_2 371 1441" /mobile_element_type="transposon:TIR/Mutator" mobile_element 29998059..29998413 /note="source:CACAO_Again_on_E210_scaffold_9 4 378" /mobile_element_type="transposon:TIR/hAT" mobile_element 29998407..30000091 /note="source:CACAO_Again_on_E210_scaffold_9 349 1957" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(30002105..30002677) /note="source:scaffold_1_CACTA_0009 13256 13829" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(30002645..30002989) /note="source:scaffold_10_CACTA_0141 1933 2252" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(30002843..30010107) /note="source:CACAO_Mutator_E1410_scaffold_6 1849 9150" /mobile_element_type="transposon:TIR/Mutator" gene complement(30007332..30008297) /locus_tag="TCM_025002" /note="dbxref CacaoGD:Thecc1EG025002" mRNA complement(join(30007332..30008040,30008127..30008297)) /locus_tag="TCM_025002" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006372t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc2085t2" CDS complement(join(30007561..30008040,30008127..30008237)) /locus_tag="TCM_025002" /note="paralog of Thecc1EG006372t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09589.1" /translation="MTSEHIDACLSLLCKRMTGPKSKLYTTRACMVDTIFFDTIRMLH TEFSIEDARAKMQISDELRGYVEGERPTYAKKGEDVDFILAPCNVGGHWVVAKIDLVR WTIKVVDSAITLDAKDNGVRAGQMTPLTTMMPFICHQAGYFNNIRRKRQDLTSMSLDI HLPKAKVHRQNDSVSCGMFMIGYIEHILQSENIRIK" mobile_element 30009568..30013236 /note="source:CACAO_M_E33977_F20_scaffold_4 12853 16549" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30013598..30016004 /note="source:CACAO_M_E44087_F42_scaffold_5 1 2407" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30016272..30016714 /note="source:CACAO_M_E44087_F42_scaffold_5 2408 2850" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 30017583..30019826 /locus_tag="TCM_025005" /note="dbxref CacaoGD:Thecc1EG025005" mRNA join(30017583..30018001,30018332..30019826) /locus_tag="TCM_025005" /product="Ubiquitin carboxyl-terminal hydrolase family protein" /inference="alignment:exonerate- protein:2:ricco:27574.m000221" /inference="similar to AA sequence:ricco:27574.m000221" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05372t00001" CDS join(30017724..30018001,30018332..30019322) /locus_tag="TCM_025005" /note="dbxref ricco:27574.m000221" /codon_start=1 /product="Ubiquitin carboxyl-terminal hydrolase family protein" /protein_id="EOY09590.1" /db_xref="TAIR:AT3G58520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9DH26" /translation="MLKVNNFLSSTRKLFPNPQIGHQQWRSIVKVRLKWVKNRSLDHV IDTETDLKAACLLKDAIKRSPTGFLTAKSFADWQKLLGLTVPVLRFLRRYPTLFEEFP HARYANLPCFRLTGTALLLDSQEQSIHQAHESDTIERLCRLLMMMKSRTAPLQSLHPL KWDLGLPDNFEKVLIPKFPDHFRFVKAPIGVAAVRLVQWREELAVSALERSNEVGEMG DEYRQFKRGQTTLAFLMNFPRGYGAQKKVRAWMEEFQKLPYISPYDDSRHIDPNSELM EKRAVGVLHEFLSLTIHKKTKRNYLRSLREELNIPHKFTRLFTRYPGIFYLSLKCKTT TVALKEGYRRGKLVNPHPLVRLREKFYHVMRTGLLYRGKGVNLIPREDILLNDLENKV EDGEEEEETEEVEIGSGDEFYEETSDVEDE" mobile_element complement(30020258..30020398) /note="source:scaffold_4_CACTA_0506 3419 3579" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(30020415..30020883) /note="source:scaffold_4_CACTA_0506 2860 3342" /mobile_element_type="transposon:TIR/CACTA" gene complement(30021436..30026400) /locus_tag="TCM_025006" /note="dbxref CacaoGD:Thecc1EG025006" mRNA complement(join(30021436..30022472,30023215..30023328, 30023529..30023696,30024159..30024401,30025091..30025174, 30025248..30026141,30026311..30026400)) /locus_tag="TCM_025006" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s21070.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040183t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s06180.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04302t00001" CDS complement(join(30021987..30022472,30023215..30023328, 30023529..30023696,30024159..30024401,30025091..30025174, 30025248..30026006)) /locus_tag="TCM_025006" /note="paralog of Thecc1EG040183t1" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein" /protein_id="EOY09591.1" /db_xref="Phytozome:POPTR_0016s06180.1" /db_xref="TAIR:AT2G42520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q84W89" /translation="MRTSWADSVTNSASEIAVSDNNSVPRPTRSTYVPPHLRNRPASD ALILSGPATERTGFSGTAGGSQWSRWSGGGGPKPEFGRLGQGYAGAGRGGGGGGGWNN RSGGWDRREREVNPFGDDDVVDNTEQAFNEQENTGINFDAYEDIPVETSGENVPPPVN TFADIDLGEVLNQNIRRCKYVKPTPVQRHAIPIALGGRDLMACAQTGSGKTAAFCFPI ISGIMREQYVQRPRVARTVYPLALILSPTRELSGQIHEEAKKFSYQTGVKVVVAYGGA SINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIR KIVEQMDMPNRGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTELIVQRVE FVHELDKRSHLMDLLHAQRENGIHGKHALTLVFVETKKGADSLEHWLCMNGFPATTIH GDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIG RTGRAGKTGLATAFFNEGNLSLARPLAELMQEANQEVPAWLTRYASRAPYSGNKNRRS GGGRFGGRDFRREGSFSRNLDYYGGGNSGSAYGVPSNYGGGYAPGVTSAWD" mobile_element 30028412..30029476 /note="source:CACAO_M_E43348_F5_scaffold_5 3690 4736" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(30029294..30030443) /note="source:CACAO_M_E84908_F12_scaffold_10 2499 3615" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30030595..30030675 /note="source:CACAO_M_E33977_F20_scaffold_4 5899 5998" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(30031457..30031750) /note="source:CACAO_on_E203_scaffold_7 4759 5129" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 30031762..30031916 /note="source:CACAO_on_E203_scaffold_7 4945 5125" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 30037077..30043111 /locus_tag="TCM_025007" /note="dbxref CacaoGD:Thecc1EG025007" mRNA join(30037077..30037173,30037691..30037747, 30037911..30037994,30039645..30039716,30040434..30040505, 30040665..30040705,30041009..30041075,30041757..30041948, 30042045..30042134,30042235..30042342,30042525..30043111) /locus_tag="TCM_025007" /product="Phosphatase 2A-4" /inference="alignment:exonerate- protein:2:ricco:27574.m000219" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040192t1" /inference="similar to AA sequence:TAIR:AT3G58500.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02540t00001" CDS join(30037081..30037173,30037691..30037747, 30037911..30037994,30039645..30039716,30040434..30040505, 30040665..30040705,30041009..30041075,30041757..30041948, 30042045..30042134,30042235..30042342,30042525..30042590) /locus_tag="TCM_025007" /note="paralog of Thecc1EG040192t1" /codon_start=1 /product="Phosphatase 2A-4" /protein_id="EOY09592.1" /db_xref="TAIR:AT3G58500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P48578" /translation="MGANPSPTDSTTDLDEQISQLMQCKPLSEQQVRALCDKAKEILM EESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVT LLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGSANVWKIFTDLFDYFPLT ALVESEIFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPR GAGYTFGQDISEQFNHTNSLKLIARAHQLVMDGFNWAHEQKVVTIFSAPNYCYRCGNM ASILEVDDCQSHTFIQFEPAPRRGEPDVTRRTPDYFL" gene complement(30043568..30052637) /locus_tag="TCM_025008" /note="dbxref CacaoGD:Thecc1EG025008" mRNA complement(join(30043568..30044236,30045632..30045747, 30046182..30046310,30046398..30046501,30046962..30047092, 30047210..30047284,30047396..30047491,30047610..30048080, 30052476..30052637)) /locus_tag="TCM_025008" /product="Phosphatidic acid phosphatase (PAP2) family protein" /inference="alignment:exonerate- protein:2:ricco:27574.m000218" /inference="similar to AA sequence:ricco:27574.m000218" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08513t00001" CDS complement(join(30043826..30044236,30045632..30045747, 30046182..30046310,30046398..30046501,30046962..30047092, 30047210..30047284,30047396..30047491,30047610..30047771)) /locus_tag="TCM_025008" /note="dbxref ricco:27574.m000218" /codon_start=1 /product="Phosphatidic acid phosphatase (PAP2) family protein" /protein_id="EOY09593.1" /db_xref="TAIR:AT3G58490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M2G7" /translation="MESIAAWQGVALCGIFSWIVISTYFNVTKKIRSLLQPRVAHRVV TGTSIILKIQKHQHKLWDGLFSVLSSIVSVPFYTAFLPLLFWSGHGKLARQMTLLMAF CDYMGNCIKDVVSAPRPSCPPVRRITATKDEEDNALEYGLPSSHTLNTVCLSGYLLYY VLSSAQSRDACVELAAVAFAGLLVGLIGVGRIYLGMHSLIDIIGGLAVGLVILAFWLT VHEYVDGFIVSGQNVTSFWAALSFLLLFAYPTPELPTPSFEYHTAFNGVAFGIVAGIQ QTYHQFHHEAVPRIFTSQLTIPAFLGRMLVGIPTILIVKFCSKALAKWILPVVSNTLG IPIKSTSYIPMLNGSAIEKKSSEIKQSSYVQKMLFFSRQDLFDVDTGIRFLQYAGLAW SVVDLVPSLFSYLRL" gene complement(30055793..30062236) /locus_tag="TCM_025009" /note="dbxref CacaoGD:Thecc1EG025009" mRNA complement(join(30055793..30055990,30057110..30057225, 30057524..30057605,30060224..30060339,30061091..30061133, 30061318..30061436,30061548..30061665,30061799..30061950, 30062108..30062236)) /locus_tag="TCM_025009" /product="Uncharacterized protein" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete" CDS complement(join(30055990,30057110..30057225, 30057524..30057605,30060224..30060339,30061091..30061133, 30061318..30061436,30061548..30061665,30061799..30061950, 30062108..30062119)) /locus_tag="TCM_025009" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09594.1" /translation="MPAVSELEQVTLKEKPLDAGIFIDPAVKNDGVGVEKFLQGKVFF YRWCDWILWKSFKCAVLVEKILRTMPGVAKIYLMIRAKDKEVAKQRLKNEIVDIELFK CLKEAYGEHYEAFMWNKLVPVVENVGDSNLGIYDVALEIKAIGLCNAVRFFVLSSADS VKRDSRQGRFMEEKVRTRDIMGRETFRLVDPVILYYGKGKLTVFPLNPNCVVAIVPAD IVVNATLAAMTKHVLLAKKADINIYHLLLLFQNQ" mobile_element 30063257..30063294 /note="source:CACAO_M_E59164_F88_scaffold_9 10812 10847" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 30063295..30068769 /note="source:CACAO_M_E44088_F76_scaffold_5 1 5475" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30071278..30071422 /note="source:CACAO_M_E42514_F40_scaffold_5 14892 15040" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(30074782..30075209) /note="source:INTACT639F_F363_scaffold_5-int 8156 8573" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 30074995..30076218 /note="source:CACAO_on_E683_scaffold_9 1316 2299" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 30075962..30079541 /locus_tag="TCM_025010" /note="dbxref CacaoGD:Thecc1EG025010" mRNA join(30075962..30077734,30078698..30078839, 30079239..30079541) /locus_tag="TCM_025010" /product="HXXXD-type acyl-transferase family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s12510.1" /inference="similar to AA sequence:Phytozome:POPTR_0640s00210.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc9878t1" CDS join(30076400..30077734,30078698..30078839, 30079239..30079402) /locus_tag="TCM_025010" /codon_start=1 /product="HXXXD-type acyl-transferase family protein, putative" /protein_id="EOY09595.1" /db_xref="Phytozome:POPTR_0640s00210.1" /db_xref="TAIR:AT3G26040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HZZ6" /translation="MDVRITSRETVQPSSQEVHLLKPFKLSFLDQLIPAFYVPLIFFY TQSSNSHFDSAQILARLKESLSKTLNQFYPLSGRTIDNFCIDYYREGVPYIEARVNGC LSDYLQSTELEKLNHLIPCEPFCYFSDPAVIPQLAVQVNIFDCGGIALAMCCSHKIID ASTISAFLRSWAAFSRGSNGEIPHPDLLEASSRLFPPMDSIPPNFLSSTRTLWFKEER YKTRRFVFDANAIATLMFKAKSKSLEHPSRVEALTAFIWKYAMLACASASGILKPSVL CQAVNLRHKMKPRLPDYSVGNLIRFAASAYKPADKDIELHHLAYLLREAMENYNTDYL QSLQGDEGFKVISEKANQVAEFAAKGNAQVYGFSSWLNSGMHQVDFGWGKPSWIGIPG VVSPAFTSLTFLKEIGQEKAVEAWVTLDEKKMTIFEHDHEFLAFASPNPHYDKYAMGL PILHSGFSSSRVPGVLFYFTQTLNCCVLKEVEIWLHDSASVTGLFCKPSPHVQTHCMF FFVQRFFRLQSTLVFELGCQSIFYVVVHADCFPMLCSL" mobile_element complement(30079407..30081144) /note="source:CACAO_M_E71501_F60_scaffold_10 1 1724" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(30081425..30085377) /locus_tag="TCM_025011" /note="dbxref CacaoGD:Thecc1EG025011" mRNA complement(join(30081425..30081637,30084140..30085377)) /locus_tag="TCM_025011" /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036284t1" /inference="similar to AA sequence:Phytozome:Glyma01g29320.1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.46 coverage" mobile_element complement(30083709..30085383) /note="source:scaffold_9_CACTA_0946 1 1661" /mobile_element_type="transposon:TIR/CACTA" CDS complement(30084629..30085231) /locus_tag="TCM_025011" /note="paralog of Thecc1EG036284t1" /codon_start=1 /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8, putative" /protein_id="EOY09596.1" /db_xref="Phytozome:Glyma01g29320.1" /db_xref="TAIR:AT4G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AY81" /translation="MIGCRWVFTVKLKVDGNIDRYKAWLVENGYTQRYGVDYQETFAP VAKINTICILISIAANRDWHLQQFDVKSAFLNGDLKEEVHIKLPPGIKHSSLCRRKVC KLKKSLCGLKQSPRAWFVRFSSIMKAFGYKQSNSDHTLFIKHKEGKVTALIMYVDDIV LTKDDPYEMKALQEYLAAKFEMKDLEQLKCFLGIKVARSK" mobile_element complement(30088320..30088589) /note="source:scaffold_9_CACTA_0946 1600 1868" /mobile_element_type="transposon:TIR/CACTA" mobile_element 30088583..30089323 /note="source:INTACT271_F62_scaffold_5-int 4306 5045" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(30089145..30089710) /note="source:INTACT362_F205_scaffold_1-int 1 564" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30092747..30092797 /note="source:CACAO_M_S_E52697_F28_scaffold_5 6058 6110" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 30094117..30118194 /locus_tag="TCM_025012" /note="dbxref CacaoGD:Thecc1EG025012" mRNA join(30094117..30094168,30096264..30096509, 30096644..30096760,30096844..30097030,30097129..30097229, 30106722..30106932,30110055..30110216,30110318..30110399, 30110522..30110892,30113107..30113200,30113652..30113827, 30116851..30117015,30117802..30118194) /locus_tag="TCM_025012" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:28902.m000037" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025021t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033433001" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.16 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00270t00004_G2" CDS join(30096350..30096509,30096644..30096760, 30096844..30097030,30097129..30097229,30106722..30106932, 30110055..30110216,30110318..30110399,30110522..30110892, 30113107..30113200,30113652..30113827,30116851..30117015, 30117802..30117943) /locus_tag="TCM_025012" /note="paralog of Thecc1EG025021t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09597.1" /db_xref="Phytozome:GSVIVT01033433001" /translation="MEALSTSNAAEEKVPGRGLKFNASEGKDDGIGIDKFLRGKVIFI SGATGFVGKVLVEKILRSVPNVSKMYLMMRAKDKEAAKQRLKTEAIDFELFKCVKQKY GKYYEAFTMSKLVPVEGNVCQSDLGLEEEIANAIKKGVQIIINSAANTSFYPSCEATL DINAMGPYHLMGFAKMCFKLELFLHLSTAYVNVPRPGRIMEQKLCMTNSMGRESLFSK SPGRFLPTLVLENENKVAAECKKTFANNAVAKKSKELGLQRAKEFGWTNAYVFTKALG EMIIDTMREDIPVVIIRPPAVEGTCKEPFPGWIEGHKSIDPIVSVYGKGKLKGFPGIA DNVIDIVPVDMVVNETLAAMTRHGVTRKVDINIYHVSSSISNPLTLQDLCQLFYQHFK SLPCIGANGKHINIQKLKIFASMEEFDAHLLREATTNSSDMNPSGKIETRKFIELAKY LAKVYKPFTFYHYRQTGTPLFRCKLRRTEHLERLWIMILSVKLLTVDICGLYERKLKK LNPTTQNITCDIGVLYKFIGGLANIIALVYDSFSLSSSTFFWDVILFSTNNTQKLLES MSEVEKEKFGFDVKSIDWKHYIVNVHIPGLRRYVMKEKGVSKLTKRVALYDIIVKVIQ FYEIILNFPISVVYDKMRYQIMKQRLRSSAV" mobile_element 30099909..30100785 /note="source:scaffold_10_CACTA_0139 7499 8368" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(30101191..30101241) /note="source:CACAO_M_S_E99903_F108_scaffold_9 4360 4406" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30101415..30101576 /note="source:scaffold_6_CACTA_0699 11839 12008" /mobile_element_type="transposon:TIR/CACTA" mobile_element 30108294..30108705 /note="source:scaffold_7_CACTA_0795 2849 3274" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(30108335..30108795) /note="source:scaffold_9_CACTA_0946 17755 18236" /mobile_element_type="transposon:TIR/CACTA" mobile_element 30112078..30112901 /note="source:scaffold_4_CACTA_0509 8408 9279" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(30114806..30115222) /note="source:scaffold_9_CACTA_0921 1377 1793" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(30115206..30115538) /note="source:scaffold_10_CACTA_0140 763 1071" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(30115565..30116352) /note="source:scaffold_6_CACTA_0699 12217 12933" /mobile_element_type="transposon:TIR/CACTA" gene complement(30117951..30119812) /locus_tag="TCM_025013" /note="dbxref CacaoGD:Thecc1EG025013" mRNA complement(join(30117951..30119082,30119200..30119812)) /locus_tag="TCM_025013" /product="HXXXD-type acyl-transferase family protein" /inference="alignment:exonerate- protein:2:ricco:28902.m000038.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025010t1" /inference="similar to AA sequence:ricco:28902.m000038" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.13 coverage" CDS complement(join(30118358..30119082,30119200..30119704)) /locus_tag="TCM_025013" /note="dbxref ricco:28902.m000038; paralog of Thecc1EG025010t1" /codon_start=1 /product="HXXXD-type acyl-transferase family protein" /protein_id="EOY09598.1" /db_xref="TAIR:AT3G26040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HZZ6" /translation="MEFGIVSREIIKPSSPGLHLPKPFQLSFLDQLIPNAAFVPLILF YRIKDNAHFSNLHISAKLKKSLSDTLNSLYPVSGRVKNNLFIDDFEQGVPYIEAHVGS RMSDFLQHPKLELLNQFVPFQPQESNPESIALLAIQLNVFDCGSVALGMVASHKIFDG STLSLFLKKSSWFNQGKYKMMRFVFDARAIATLKGKAKSENVVNPTRIDAMTGFIWKS ILAASKKASVGAYKPSMFVQAVNIREKMMPPLSSNFIGNGFLWASAVCDFANIDAELH EHVILLREAYAKTESFLNVHRGDTRLQGISEYLKSLEEISKENPEDFCFSSWLNFGFG EADFGWGKPVWVGLVGEIGAMVRSSIVFQKADWNAGGIETWITLREKEMEILENDPDF LQYASPNPSIIIPSDCL" mobile_element 30120057..30120737 /note="source:CACAO_PIF_E144_scaffold_10 1200 1902" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(30120761..30121299) /note="source:CACAO_PIF_E144_scaffold_10 1203 1765" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(30122986..30123062) /note="source:CACAO_M_E57346_F74_scaffold_9 5056 5141" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30124213..30124275 /note="source:CACAO_M_E14113_F106_scaffold_3 13803 13866" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(30124220..30124283) /note="source:CACAO_M_E14113_F106_scaffold_3 13799 13862" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(30125830..30126406) /note="source:CACAO_M_S_E16683_F28_scaffold_2 11153 11728" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30128735..30129424 /note="source:CACAO_PIF_E465_scaffold_115 3153 3832" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(30129910..30133553) /locus_tag="TCM_025014" /note="dbxref CacaoGD:Thecc1EG025014" mRNA complement(join(30129910..30130205,30130408..30130548, 30131392..30131990,30133529..30133553)) /locus_tag="TCM_025014" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(join(30130111..30130205,30130408..30130548, 30131392..30131776)) /locus_tag="TCM_025014" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09599.1" /translation="MQPSGDIAKGPMPFSSDTTMFVDNTASDQGEDDWFPISEDCFDD DFDDKHNDCLEDDWGDNSDILNCNHAEGSKEHARAIDLGDVQCDGLIYNSPIVGDNGI CSLETLLNDSVQESVNAGVYRPWLILGIKKAVKNTYPNAHQGLCDYHSQKNLKNKFKR DDVAIIFTLARDCYKEFIRDMFQHWFHDRHEQAVNVNTDLSPWATR" mobile_element 30135028..30135440 /note="source:CACAO_PIF_E119_scaffold_3 1749 2187" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 30136293..30139231 /note="source:CACAO_M_E44089_F281_scaffold_5 1 2939" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(30139232..30140177) /note="source:CACAO_M_E49279_F74_scaffold_6 1002 1930" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(30152655..30153945) /note="source:INTACT473_F7_scaffold_3-int 7702 8809" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 30153128..30155878 /locus_tag="TCM_025018" /note="dbxref CacaoGD:Thecc1EG025018" mRNA join(30153128..30153373,30154848..30155878) /locus_tag="TCM_025018" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.27 coverage" CDS 30155414..30155653 /locus_tag="TCM_025018" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09600.1" /translation="MKVICQTPMKLHSLDKNFRGSRKKQEKNAEEEQSYDIMAAGGKK FGIGENDPRGNEACRMHVSPVDTWDPSGLILYYRF" gene complement(30156105..30184803) /locus_tag="TCM_025019" /note="dbxref CacaoGD:Thecc1EG025019" mRNA complement(join(30156105..30156536,30156858..30157255, 30157392..30157473,30157550..30157711,30157988..30158198, 30158409..30158509,30159008..30159207,30159316..30159419, 30159674..30160197,30180081..30180215,30184546..30184803)) /locus_tag="TCM_025019" /product="Jojoba acyl CoA reductase-related male sterility protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma02g26670.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025021t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s06210.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.23 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g6995t1" CDS complement(join(30156371..30156536,30156858..30157255, 30157392..30157473,30157550..30157711,30157988..30158198, 30158409..30158509,30159008..30159207,30159316..30159419, 30159674..30160058)) /locus_tag="TCM_025019" /note="paralog of Thecc1EG025021t1" /codon_start=1 /product="Jojoba acyl CoA reductase-related male sterility protein" /protein_id="EOY09601.1" /db_xref="Phytozome:POPTR_0016s06210.1" /db_xref="TAIR:AT3G11980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q08891" /translation="MGLWCLSSFSVAPSKFATVCNNCNSWGKKNHFVHCQGSGNAINT SGISSVLREISEMVNADRGATVMDAGSLVMSLNGNSQADIAIKELVPCGGSTTSLVEL QEGIGIVKFLRGKDFFITGSTGFLAKVLIEKILRTVPDVGKIFLLIKAKNREAAMERL KSEIINAELFKCLQQTYGNSYKNFMLSKLVPVVGNVCESDLGLDGDLADMIAKEVDII VNSAAKTTFDERYDVAIDVNTKGARHLMGFAKKCQKLELFLQVSTAYVNGQRQGRIME KPFDIGDCIARENLISETTPTSIPELDVEDELLLALNSKKGFDDTEVAQKMKELGLER ARKYGWQDAYAFTKAMGEMMINNMRGEIPVVIIRPSVIESTCKEPFPGWMEGNRMMDP LVLCYGKGQLTGFLADPNGVLDVVPADMVVNATLAAIARHGMTPKPDISIYHIASSVV NPLVFQDLARLLYEHYSSSPFLDSKGSPIHVPSVKLFNSMEDFSAHLWRDATQKAGLT AVASWGGKLSHKLETICRKSVEQAKYLANKYEPYTFYGGRFDNSNTERLMEIMSEEEK RNFGFDVESIDWKDYIKKVHIPGLKRHVLKGRGMCT" mobile_element complement(30160653..30160949) /note="source:CACAO_on_E33_A_scaffold_3 863 1143" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(30170205..30170678) /note="source:CACAO_M_E44150_F74_scaffold_5 5204 5681" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 30172351..30172983 /locus_tag="TCM_025020" /note="dbxref CacaoGD:Thecc1EG025020" mRNA 30172351..30172983 /locus_tag="TCM_025020" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025013t1" /inference="similar to AA sequence:ricco:28902.m000038" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS 30172486..30172926 /locus_tag="TCM_025020" /note="dbxref ricco:28902.m000038; paralog of Thecc1EG025013t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09602.1" /translation="MHTIPFGPTYSHNLQSTNPLLPCQCSFQYLTNMSVLQGDQSGLE GIIEYLNFVEICLKQNTVLMGFTNWLDFGFDKVDFGWGKPVWNGISGTAGSCTRDFTI LQKASWSNGGIEAWITLSENEMEILENDPEFLAFASPNPSISTP" mobile_element complement(30173013..30173320) /note="source:CACAO_Again_on_E100_scaffold_4 4463 4769" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(30173317..30173568) /note="source:CACAO_Again_on_E100_scaffold_4 767 1019" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(30173641..30174022) /note="source:CACAO_Again_on_E100_scaffold_4 4 315" /mobile_element_type="transposon:TIR/hAT" mobile_element 30185850..30186205 /note="source:CACAO_Mutator_E592_scaffold_3 17171 17533" /mobile_element_type="transposon:TIR/Mutator" gene complement(30186705..30190396) /locus_tag="TCM_025021" /note="dbxref CacaoGD:Thecc1EG025021" mRNA complement(join(30186705..30187387,30187550..30187947, 30188085..30188166,30188243..30188404,30188647..30188857, 30189067..30189167,30189270..30189469,30189578..30189681, 30189814..30190396)) /locus_tag="TCM_025021" /product="Jojoba acyl CoA reductase-related male sterility protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06210.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025019t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s06210.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7008t3" CDS complement(join(30187222..30187387,30187550..30187947, 30188085..30188166,30188243..30188404,30188647..30188857, 30189067..30189167,30189270..30189469,30189578..30189681, 30189814..30190198)) /locus_tag="TCM_025021" /note="paralog of Thecc1EG025019t1" /codon_start=1 /product="Jojoba acyl CoA reductase-related male sterility protein" /protein_id="EOY09603.1" /db_xref="Phytozome:POPTR_0016s06210.1" /db_xref="TAIR:AT3G11980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q08891" /translation="MGALFLNSFSVSPSKLATVSNNCNSWRKKNIFVHCQGSGNAVKT SGVSSVLRERSKMVNADRGATVMDAGSLVMSPNGNSQADIALKDLVPYGGSTTSLVEL QEGIGIVKFLRGKDFFITGSTGFLAKVLIEKILRTVPDVGKIFLLIKAKNREAAMERL KSEIINAELFKCLQQTYGNSYQNFMLSKLVPLVGNICESDLGLDGDLADMIAKEVDII VNSAANTTFDERYDVAIDINTRGACHLMCFAKKCQKLKLFLQVSTAYVNGQRQGRIME KPFDIGDCIARENLISETTPRSIPELDVEDELTLALNSKKGFDDTEVAHKMKELGLER ARKYGWQDTYVFTKAMGEMMINNMRGEIPVVIIRPSVIESTCKEPFPGWMEGNRMMDP IVLCYGKGQLTGFLVDPNGVLDVVPADMVVNATLAAIARHGVTPKPDINIYHIASSVV NPLVFQDLARLLYEHYNSSPFLDSKGSPIHVPSMKLFNSMEDFSAHLWRDATQRTGLT AVASWSGKLSQKLETICRKSVEQAKYLANIYEPYTFYAGRFDSSNTERLMEIMSEEEK RNFGFDVGSMDWKDYIKNVHIPGLRRHVMKGRGMCT" gene complement(30190990..30195229) /locus_tag="TCM_025022" /note="dbxref CacaoGD:Thecc1EG025022" mRNA complement(join(30190990..30191557,30191680..30191751, 30192244..30192423,30192538..30192607,30192991..30193117, 30194276..30194331,30194646..30195199)) /locus_tag="TCM_025022" /product="SET domain protein 38 isoform 1" /inference="alignment:exonerate- protein:2:ricco:28516.m000033" /inference="similar to AA sequence:Phytozome:GSVIVT01033432001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc805t1" mRNA complement(join(30191312..30191340,30191458..30191557, 30191680..30191751,30192244..30192423,30192538..30192607, 30192991..30193117,30194276..30194331,30194646..30195229)) /locus_tag="TCM_025022" /product="SET domain protein 38 isoform 2" /inference="alignment:exonerate- protein:2:ricco:28516.m000033" /inference="similar to AA sequence:Phytozome:GSVIVT01033432001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc805t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc805t1" mRNA complement(join(30191312..30191751,30192244..30192423, 30192538..30192607,30192991..30193117,30194276..30194331, 30194646..30195229)) /locus_tag="TCM_025022" /product="SET domain protein 38 isoform 3" /inference="alignment:exonerate- protein:2:ricco:28516.m000033" /inference="similar to AA sequence:Phytozome:GSVIVT01033432001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc805t4; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc805t1" CDS complement(join(30191322..30191340,30191458..30191557, 30191680..30191751,30192244..30192423,30192538..30192607, 30192991..30193117,30194276..30194331,30194646..30195023)) /locus_tag="TCM_025022" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="SET domain protein 38 isoform 2" /protein_id="EOY09605.1" /db_xref="Phytozome:GSVIVT01033432001" /db_xref="TAIR:AT5G06620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FG08" /translation="MSPVGLSCYSRWLSRFKTIYSQSTVVSFSSTATTTAPPNENETP LSRPAPPPIRVALTESAGRGVFATRRIGAGDTIHSAKPLVSHPSLAAINTVCYFCLKK IQTFSGSQRQGVSLCCEKCKESSKVFYDVEKRADWLDFDDYCRTEGMKYPLLVKRLAC MVISGAAQANIVDILQPASLTQEMILKMEEGFCLLQCAFSKANIRKEHTSFLTKQWYT AVLARIRINAFRIDLAGGVYEDLLSLAAASVEAESAVGNAIYMLPSFYNHDCDPNTHI IWIENADAKLKALHDIEEGEELRICYIDASLSCDARQSILSQGFGFKCNCLSCKRLG" CDS complement(join(30191439..30191557,30191680..30191751, 30192244..30192423,30192538..30192607,30192991..30193117, 30194276..30194331,30194646..30195023)) /locus_tag="TCM_025022" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="SET domain protein 38 isoform 1" /protein_id="EOY09604.1" /db_xref="Phytozome:GSVIVT01033432001" /db_xref="TAIR:AT5G06620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FG08" /translation="MSPVGLSCYSRWLSRFKTIYSQSTVVSFSSTATTTAPPNENETP LSRPAPPPIRVALTESAGRGVFATRRIGAGDTIHSAKPLVSHPSLAAINTVCYFCLKK IQTFSGSQRQGVSLCCEKCKESSKVFYDVEKRADWLDFDDYCRTEGMKYPLLVKRLAC MVISGAAQANIVDILQPASLTQEMILKMEEGFCLLQCAFSKANIRKEHTSFLTKQWYT AVLARIRINAFRIDLAGGVYEDLLSLAAASVEAESAVGNAIYMLPSFYNHDCDPNTHI IWIENADAKLKALHDIEEGEELRICYIDASLSCDARQSILSQGFGFKCNCLRCLSGD" CDS complement(join(30191594..30191751,30192244..30192423, 30192538..30192607,30192991..30193117,30194276..30194331, 30194646..30195023)) /locus_tag="TCM_025022" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="SET domain protein 38 isoform 3" /protein_id="EOY09606.1" /db_xref="Phytozome:GSVIVT01033432001" /db_xref="TAIR:AT5G06620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FG08" /translation="MSPVGLSCYSRWLSRFKTIYSQSTVVSFSSTATTTAPPNENETP LSRPAPPPIRVALTESAGRGVFATRRIGAGDTIHSAKPLVSHPSLAAINTVCYFCLKK IQTFSGSQRQGVSLCCEKCKESSKVFYDVEKRADWLDFDDYCRTEGMKYPLLVKRLAC MVISGAAQANIVDILQPASLTQEMILKMEEGFCLLQCAFSKANIRKEHTSFLTKQWYT AVLARIRINAFRIDLAGGVYEDLLSLAAASVEAESAVGNAIYMLPSFYNHDCDPNTHI IWIENADAKLKALHDIEEGSSLLLLEELWLTLLLAPQNHTKGILNS" mobile_element 30193612..30193704 /note="source:scaffold_3_CACTA_0377 2486 2580" /mobile_element_type="transposon:TIR/CACTA" gene complement(30197029..30200626) /locus_tag="TCM_025023" /note="dbxref CacaoGD:Thecc1EG025023" mRNA complement(join(30197029..30197947,30199033..30199377, 30200350..30200626)) /locus_tag="TCM_025023" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s21130.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034747t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s21130.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09475t00001" CDS complement(join(30197420..30197947,30199033..30199377, 30200350..30200556)) /locus_tag="TCM_025023" /note="paralog of Thecc1EG034747t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09607.1" /db_xref="Phytozome:POPTR_0006s21130.1" /db_xref="TAIR:AT5G06610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IID6" /translation="MSRLAPLSEEPINEEDSANCSKKGLSWKNWLKTHFSLVFNKKSD LKILLSVLGCPLFPVSILSKPPINEVSSSAQYIIQHFTAATGCRKSEGRVKNIFVTGK VTMAMVDELGATAGSVAGAAGVAQKGCFVMWQMVPNKWLIELVLGGHKVVAGSDGNVA WRHTPWLGAHAAKGGVRPLRRALQGLDPVAISAVFSSAQYMGEKRISGTDCFVLKLCA DQVDLADRSDSTAEMIKHVIFGYFSQRSGLLVFLEDSYLTRIQSPGTHPTYWETTMAT KIEDYRIVEGVMIAHSGQSSVIITRFGDNLKAGLSVTRMEEIWTIDDVAFNVPGLSID CFIPPKEVQKDFPEESLDWRSPLHQ" mobile_element 30214369..30214438 /note="source:CACAO_M_S_E64608_F12_scaffold_5 1010 1089" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(30219746..30226316) /locus_tag="TCM_025025" /note="dbxref CacaoGD:Thecc1EG025025" mRNA complement(join(30219746..30219805,30223634..30223776, 30223860..30223976,30224183..30224347,30224543..30224593, 30224726..30224752,30224918..30224995,30225296..30225455, 30226117..30226316)) /locus_tag="TCM_025025" /product="SC35-like splicing factor 33 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06240.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040038t1" /inference="similar to AA sequence:Phytozome:GSVIVT01025432001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00331t00001" mobile_element 30219990..30220140 /note="source:scaffold_5_CACTA_0580 4472 4632" /mobile_element_type="transposon:TIR/CACTA" gene 30221558..30223100 /locus_tag="TCM_025026" /note="dbxref CacaoGD:Thecc1EG025026" mRNA 30221558..30223100 /locus_tag="TCM_025026" /product="F-box family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s21140.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011541t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s21140.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06991t00001" CDS 30221595..30222626 /locus_tag="TCM_025026" /note="paralog of Thecc1EG011541t1" /codon_start=1 /product="F-box family protein" /protein_id="EOY09613.1" /db_xref="Phytozome:POPTR_0006s21140.1" /db_xref="TAIR:AT2G44130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9Y4" /translation="MGSTELLSELIPALPEEIGLECLTRFHYSTHRMSARVCRRWQEL LQSRQFYYHRKKTGYTQKAACLVQLLKSGSDPDGSKHAGQPRYGITVFDPASGTWDRV DPVPKYPGGLPLFCQITSSEGKLVLMGGWDPTSYDPVRDVFIYEFTTQRWRQGKQMPE TRSFFAAGELNGRVIVAGGHDENKNALSTAWEYDVIRDEWTQLTQLSQERDECQGVMI GSDFWVVSGYRTDNQGRFEGSAELMDLGTGQWRRVEEAWKGSQCPRSCVGVGKEKKFF CWADCDSAIRVGVCAVPLGESTFVSGSAYQGGPQGFFLVDGQNGQFKSIDVPAEFSGF VQSGCCVDI" mRNA complement(join(30223427..30223776,30223860..30223976, 30224183..30224347,30224918..30224995,30225296..30225455, 30226117..30226222)) /locus_tag="TCM_025025" /product="SC35-like splicing factor 33 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06240.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040038t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s06240.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00187t00001; inference alignment:Newbler:10:TSA:cgbaP1_g00331t00001; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc71t24" mRNA complement(join(30223579..30223776,30223840..30223846, 30223876..30223976,30224183..30224347,30224918..30224995, 30225296..30225455,30226117..30226203)) /locus_tag="TCM_025025" /product="SC35-like splicing factor 33 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06240.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040038t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s06240.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc71t24; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc71t24; inference alignment:Newbler:10:TSA:cgbaP1_g00331t00001" CDS complement(join(30223653..30223776,30223840..30223846, 30223876..30223976,30224183..30224347,30224918..30224995, 30225296..30225444)) /locus_tag="TCM_025025" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG040038t1" /codon_start=1 /product="SC35-like splicing factor 33 isoform 3" /protein_id="EOY09610.1" /db_xref="Phytozome:POPTR_0016s06240.1" /db_xref="TAIR:AT1G55310.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I090" /translation="MRGRSYSYSPSPPRDYGRRRRSPSPRGRYGGHGRDLPTSLLVRN LRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYLDSADAADAKYHMDGY VLLGRELTVVFAEENRKKPSEMRARDRVRGLAYRRSPLRYSRSPRYARSYSRSPDYYS PSPRLFLSISPRDRRYRGRSCSRSPYGSRSPGRSFNRSRSQSLDYST" CDS complement(join(30223653..30223776,30223860..30223976, 30224183..30224347,30224918..30224995,30225296..30225444)) /locus_tag="TCM_025025" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG040038t1" /codon_start=1 /product="SC35-like splicing factor 33 isoform 2" /protein_id="EOY09609.1" /db_xref="Phytozome:POPTR_0016s06240.1" /db_xref="TAIR:AT1G55310.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I090" /translation="MRGRSYSYSPSPPRDYGRRRRSPSPRGRYGGHGRDLPTSLLVRN LRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYLDSADAADAKYHMDGY VLLGRELTVVFAEENRKKPSEMRARDRVRGLAYRRSPLRYSRSPRYARSYSRSPDYYS PSPRRRRFSRSISPRDRRYRGRSCSRSPYGSRSPGRSFNRSRSQSLDYST" CDS complement(join(30223653..30223776,30223860..30223976, 30224183..30224347,30224543..30224593,30224726..30224752, 30224918..30224995,30225296..30225444)) /locus_tag="TCM_025025" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG040038t1" /codon_start=1 /product="SC35-like splicing factor 33 isoform 1" /protein_id="EOY09608.1" /db_xref="Phytozome:GSVIVT01025432001" /db_xref="TAIR:AT1G55310.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I090" /translation="MRGRSYSYSPSPPRDYGRRRRSPSPRGRYGGHGRDLPTSLLVRN LRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGVEDTNEVIKSASLEDYQLNLNFAPTR EPRGFGFVQYLDSADAADAKYHMDGYVLLGRELTVVFAEENRKKPSEMRARDRVRGLA YRRSPLRYSRSPRYARSYSRSPDYYSPSPRRRRFSRSISPRDRRYRGRSCSRSPYGSR SPGRSFNRSRSQSLDYST" mRNA complement(join(<30223754..30223776,30223860..30223976, 30224183..30224347,30224918..30224995,30225296..30225455, 30226117..30226223)) /locus_tag="TCM_025025" /product="SC35-like splicing factor 33 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06240.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040038t1" /inference="similar to AA sequence:ricco:27553.m000316" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00076t00008; inference alignment:Newbler:10:TSA:cgbaP1_g00331t00001; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc71t24" mRNA complement(join(<30223754..30223776,30223860..30223976, 30224183..30224347,30224918..30224995,30225296..30225455, 30225867..30226106)) /locus_tag="TCM_025025" /product="SC35-like splicing factor 33 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06240.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040038t1" /inference="similar to AA sequence:ricco:27553.m000316" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00076t00007; alternateUTRof:Thecc1EG025025t4; inference alignment:Newbler:10:TSA:cgbaP1_g00331t00001; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc71t24" CDS complement(join(<30223755..30223776,30223860..30223976, 30224183..30224347,30224918..30224995,30225296..30225444)) /locus_tag="TCM_025025" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:27553.m000316; paralog of Thecc1EG040038t1" /codon_start=1 /product="SC35-like splicing factor 33 isoform 4" /protein_id="EOY09611.1" /db_xref="TAIR:AT1G55310.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GLG0" /translation="MRGRSYSYSPSPPRDYGRRRRSPSPRGRYGGHGRDLPTSLLVRN LRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYLDSADAADAKYHMDGY VLLGRELTVVFAEENRKKPSEMRARDRVRGLAYRRSPLRYSRSPRYARSYSRSPDYYS PSPRRRRFSRSISPRDR" CDS complement(join(<30223755..30223776,30223860..30223976, 30224183..30224347,30224918..30224995,30225296..30225444)) /locus_tag="TCM_025025" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:27553.m000316; paralog of Thecc1EG040038t1" /codon_start=1 /product="SC35-like splicing factor 33 isoform 4" /protein_id="EOY09612.1" /db_xref="TAIR:AT1G55310.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GLG0" /translation="MRGRSYSYSPSPPRDYGRRRRSPSPRGRYGGHGRDLPTSLLVRN LRHDCRPEDLRGPFGQFGRLKDIYLPRDYYTGEPRGFGFVQYLDSADAADAKYHMDGY VLLGRELTVVFAEENRKKPSEMRARDRVRGLAYRRSPLRYSRSPRYARSYSRSPDYYS PSPRRRRFSRSISPRDR" gene 30226733..30249217 /locus_tag="TCM_025027" /note="dbxref CacaoGD:Thecc1EG025027" mRNA join(30226733..30226865,30227057..30227265, 30227823..30227963,30228131..30228304,30230100..30230196, 30231740..30231858,30231956..30232078,30232195..30232266, 30232944..30233036,30233625..30233738,30233824..30233946, 30234089..30234274,30234370..30234444,30235271..30235407, 30236758..30236892,30237279..30237424,30237514..30237579, 30238654..30238760,30238914..30238994,30239100..30239174, 30239283..30239384,30240159..30240327,30240415..30240563, 30240744..30240827,30240942..30241042,30241320..30241473, 30241576..30241650,30241779..30241914,30243391..30244042, 30244861..30244921,30245468..30245613,30246071..30246169, 30246433..30246798) /locus_tag="TCM_025027" /product="RNA binding,RNA binding isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033430001" /inference="similar to AA sequence:Phytozome:GSVIVT01033430001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc469t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc465t5; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc456t6" mRNA join(30226837..30227265,30227823..30227963, 30228131..30228304,30230100..30230196,30231740..30231858, 30231956..30232078,30232195..30232266,30232944..30233036, 30233625..30233738,30233824..30233946,30234089..30234274, 30234370..30234444,30235271..30235407,30236758..30236892, 30237279..30237424,30237514..30237579,30238654..30238760, 30238914..30238994,30239100..30239174,30239283..30239384, 30240159..30240327,30240415..30240563,30240744..30240827, 30240942..30241042,30241320..30241473,30241576..30241650, 30241779..30241914,30243391..30244042,30244861..30244921, 30245468..30245613,30245701..30245884,30246071..30246169, 30246433..30246797,30246901..30247077,30247777..30247873, 30248006..30248059,30248245..30248475,30248636..30248719, 30248840..30249217) /locus_tag="TCM_025027" /product="RNA binding,RNA binding isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033430001" /inference="similar to AA sequence:Phytozome:GSVIVT01033430001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc456t3; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc456t6; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc465t5" mRNA join(30226837..30226865,30227057..30227265, 30227823..30227963,30228131..30228304,30230100..30230196, 30231740..30231858,30231956..30232078,30232195..30232266, 30232944..30233036,30233625..30233738,30233824..30233946, 30234089..30234274,30234370..30234444,30235271..30235407, 30236758..30236892,30237279..30237424,30237514..30237579, 30238654..30238760,30238914..30238994,30239100..30239174, 30239283..30239384,30240159..30240327,30240415..30240563, 30240744..30240827,30240942..30241042,30241320..30241473, 30241576..30241650,30241779..30241914,30243391..30244042, 30244861..30244921,30245468..30245613,30245701..30245884, 30246071..30246169,30246433..30246797,30246901..30247077, 30247777..30247873,30248006..30248161,30248245..30248475, 30248636..30248719,30248840..30249217) /locus_tag="TCM_025027" /product="RNA binding,RNA binding isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033430001" /inference="similar to AA sequence:Phytozome:GSVIVT01033430001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc456t6; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc456t6" CDS join(30227185..30227265,30227823..30227963, 30228131..30228304,30230100..30230196,30231740..30231858, 30231956..30232078,30232195..30232266,30232944..30233036, 30233625..30233738,30233824..30233946,30234089..30234274, 30234370..30234444,30235271..30235407,30236758..30236892, 30237279..30237424,30237514..30237579,30238654..30238760, 30238914..30238994,30239100..30239174,30239283..30239384, 30240159..30240327,30240415..30240563,30240744..30240827, 30240942..30241042,30241320..30241473,30241576..30241650, 30241779..30241914,30243391..30244042,30244861..30244921, 30245468..30245613,30245701..30245884,30246071..30246169, 30246433..30246797,30246901..30247077,30247777..30247873, 30248006..30248161,30248245..30248475,30248636..30248719, 30248840..30248947) /locus_tag="TCM_025027" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="RNA binding,RNA binding isoform 1" /protein_id="EOY09614.1" /db_xref="Phytozome:GSVIVT01033430001" /db_xref="TAIR:AT3G11964.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HLF1" /translation="MLDDLGSLFGDGITGKLPRYANKITLKNISPGMKLWGVVAEVNE KDLVISLPGGLRGLVRAADALDSVLSNEVENNEGNFLTNIFCTGQLVSCIVLQLDDDK KETGKRKIWLSLRLSLLHKSFTLDAVQEGMVLTAYVKSIEDHGYILHFGLSSFMGFLP KDDEESRDIKVRTGQFLQGVVRRIDKTRKVVYLSSNPDTVSKCVTKDLKGISIDLLIP GMLVNTSVRSILENGVMLSFLTYFTGTVDMFHLQNQFPTKDWKDDYNQNKKINARILF IDPSTRAVGLTLNPHLVHNKAPPSHVNIGEIYDQSKVIRVDRGLGLLLDIPSKPVSTP AYVYISDVAEEEVRKLEKKFKEGSQVRVRIHGFRHLEGLATGILKASAFEGQVFTHSD VKPGMVIRAKVIALDSFSAIVQFPGGVKALCPIRHMSEFEIAKPGKKFKVGAELVFRV LGCKSKRITVTHKKTLVKSKLGIISSYADATEGFITHGWITKIEKHGCFVRFYNGVQG FAPRSELGLGPGYDPSSMYHVGQVIKCRVTSSNPASRRINLSFQMKPVRVSEDDLVKL GSIVSGLIDRLTPSAVVIQVNSKAHLKGTISNEHLADNHESAALLKSVLKPGYKFDQL LVLDIEGNNILLSAKYSLTSLAEQLPSDISQIHPNSVVHGYVCNLIETGCFVRFLGRL TGFSPRSKSTDDYKADLSGAFYVGQSVRSNILDVNSETARITLSLKQSSCSSTDASFI QEFFLLEEKIAKLQSSDSDGSELKWVEGFNVGSVIEGKIGEAKDIGVVVSFDKYNDVL GFVTHYQLGGLTLETGSIVQAAVLDVAKAERLVDLSLKPEFVDKSQEESSKGQIQKKK RKREASKDLEVHQTVNAVVEIVKEHYLVLAIPEYNYAIGYASKADYNTQKFPQKQFVN GQRVIATVMALPSPTTSGRLLLLLNSISEVTETSSSKRAKKKSSYSVGSLVSAEVTEI MPLELRLKFGIGFRGRVHVTEVNDDNVLENPFGNFKIGQTITARVVGKANQKGYLWDL SIKPTMLAGTGETGVNSTNDECNFSAGQLVTGYVYKMDTEWAWLTISRHVKAQLYILD SAREPNELQQFQERFKVGKAVSGHVLNVNKDKKLLRLVRHPLGALSIRNVHGEDKRTG ESDNNISGESVTTHIHEGDILGGRISKILPGVGGLLVQIGPHIFGRVHFTELKDTWES DPLSGYYEGQFVKCKVLEISHSVKGTIHIDLSLRLSLDGMLPNNPSELGSDEDSTSKR VEKIEDLYPNMAIQGYVKNTIPKGCFILLSRKLDAKILLSNLSDGYIDDPKKEFPIGK LVAGRVLAVEPLSKRVEVTLKKSNTNGTSKSEINDFSSLHVGDIVSGRIRRVESYGLF VTLDHTNMVGLCHVSELSDDHVDNIQTKYRAGEKVTAKILKLDEERHRISLGMKNSYL TDDIDIQIPSNEESDEDVEETDDTRSRMLTDSTLGMAIEYENGASSICAQAESRASIP PLEVTLDDIEHSDMDILVSQNQANSNEAVTGDEKNKRRAKKKAKEDREREIRAAEERQ LEMDVPRTADEFEKLVRNSPNSSFVWIKYMAFMLNSADIEKARAIAERALRTINIREE NEKLNIWVAYFNLENQYGNPPEEAVQKIFQRALQYCDPKKVHLALLGMYERTEQHKLA DELLDKMTRKFKHSCKVWLRRVQMLLMQQQDGVQSVVNRALLCLPRHKHIKFISQTAI LEFKSGVPDRGRSMFEGILREYPKRTDLWSIYLDXEIRLGDEDVIRALFERAISLSLP PKKMKFLFKKYLDYEKSLGDEERIKSVKQKAMDYVESTLT" CDS join(30227185..30227265,30227823..30227963, 30228131..30228304,30230100..30230196,30231740..30231858, 30231956..30232078,30232195..30232266,30232944..30233036, 30233625..30233738,30233824..30233946,30234089..30234274, 30234370..30234444,30235271..30235407,30236758..30236892, 30237279..30237424,30237514..30237579,30238654..30238760, 30238914..30238994,30239100..30239174,30239283..30239384, 30240159..30240327,30240415..30240563,30240744..30240827, 30240942..30241042,30241320..30241473,30241576..30241650, 30241779..30241914,30243391..30244042,30244861..30244921, 30245468..30245613,30245701..30245884,30246071..30246169, 30246433..30246797,30246901..30247077,30247777..30247873, 30248006..30248059,30248245..30248475,30248636..30248719, 30248840..30248947) /locus_tag="TCM_025027" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="RNA binding,RNA binding isoform 2" /protein_id="EOY09615.1" /db_xref="Phytozome:GSVIVT01033430001" /db_xref="TAIR:AT3G11964.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HLF1" /translation="MLDDLGSLFGDGITGKLPRYANKITLKNISPGMKLWGVVAEVNE KDLVISLPGGLRGLVRAADALDSVLSNEVENNEGNFLTNIFCTGQLVSCIVLQLDDDK KETGKRKIWLSLRLSLLHKSFTLDAVQEGMVLTAYVKSIEDHGYILHFGLSSFMGFLP KDDEESRDIKVRTGQFLQGVVRRIDKTRKVVYLSSNPDTVSKCVTKDLKGISIDLLIP GMLVNTSVRSILENGVMLSFLTYFTGTVDMFHLQNQFPTKDWKDDYNQNKKINARILF IDPSTRAVGLTLNPHLVHNKAPPSHVNIGEIYDQSKVIRVDRGLGLLLDIPSKPVSTP AYVYISDVAEEEVRKLEKKFKEGSQVRVRIHGFRHLEGLATGILKASAFEGQVFTHSD VKPGMVIRAKVIALDSFSAIVQFPGGVKALCPIRHMSEFEIAKPGKKFKVGAELVFRV LGCKSKRITVTHKKTLVKSKLGIISSYADATEGFITHGWITKIEKHGCFVRFYNGVQG FAPRSELGLGPGYDPSSMYHVGQVIKCRVTSSNPASRRINLSFQMKPVRVSEDDLVKL GSIVSGLIDRLTPSAVVIQVNSKAHLKGTISNEHLADNHESAALLKSVLKPGYKFDQL LVLDIEGNNILLSAKYSLTSLAEQLPSDISQIHPNSVVHGYVCNLIETGCFVRFLGRL TGFSPRSKSTDDYKADLSGAFYVGQSVRSNILDVNSETARITLSLKQSSCSSTDASFI QEFFLLEEKIAKLQSSDSDGSELKWVEGFNVGSVIEGKIGEAKDIGVVVSFDKYNDVL GFVTHYQLGGLTLETGSIVQAAVLDVAKAERLVDLSLKPEFVDKSQEESSKGQIQKKK RKREASKDLEVHQTVNAVVEIVKEHYLVLAIPEYNYAIGYASKADYNTQKFPQKQFVN GQRVIATVMALPSPTTSGRLLLLLNSISEVTETSSSKRAKKKSSYSVGSLVSAEVTEI MPLELRLKFGIGFRGRVHVTEVNDDNVLENPFGNFKIGQTITARVVGKANQKGYLWDL SIKPTMLAGTGETGVNSTNDECNFSAGQLVTGYVYKMDTEWAWLTISRHVKAQLYILD SAREPNELQQFQERFKVGKAVSGHVLNVNKDKKLLRLVRHPLGALSIRNVHGEDKRTG ESDNNISGESVTTHIHEGDILGGRISKILPGVGGLLVQIGPHIFGRVHFTELKDTWES DPLSGYYEGQFVKCKVLEISHSVKGTIHIDLSLRLSLDGMLPNNPSELGSDEDSTSKR VEKIEDLYPNMAIQGYVKNTIPKGCFILLSRKLDAKILLSNLSDGYIDDPKKEFPIGK LVAGRVLAVEPLSKRVEVTLKKSNTNGTSKSEINDFSSLHVGDIVSGRIRRVESYGLF VTLDHTNMVGLCHVSELSDDHVDNIQTKYRAGEKVTAKILKLDEERHRISLGMKNSYL TDDIDIQIPSNEESDEDVEETDDTRSRMLTDSTLGMAIEYENGASSICAQAESRASIP PLEVTLDDIEHSDMDILVSQNQANSNEAVTGDEKNKRRAKKKAKEDREREIRAAEERQ LEMDVPRTADEFEKLVRNSPNSSFVWIKYMAFMLNSADIEKARAIAERALRTINIREE NEKLNIWVAYFNLENQYGNPPEEAVQKIFQRALQYCDPKKVWLRRVQMLLMQQQDGVQ SVVNRALLCLPRHKHIKFISQTAILEFKSGVPDRGRSMFEGILREYPKRTDLWSIYLD XEIRLGDEDVIRALFERAISLSLPPKKMKFLFKKYLDYEKSLGDEERIKSVKQKAMDY VESTLT" CDS join(30227185..30227265,30227823..30227963, 30228131..30228304,30230100..30230196,30231740..30231858, 30231956..30232078,30232195..30232266,30232944..30233036, 30233625..30233738,30233824..30233946,30234089..30234274, 30234370..30234444,30235271..30235407,30236758..30236892, 30237279..30237424,30237514..30237579,30238654..30238760, 30238914..30238994,30239100..30239174,30239283..30239384, 30240159..30240327,30240415..30240563,30240744..30240827, 30240942..30241042,30241320..30241473,30241576..30241650, 30241779..30241914,30243391..30244042,30244861..30244921, 30245468..30245613,30246071..30246167) /locus_tag="TCM_025027" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="RNA binding,RNA binding isoform 3" /protein_id="EOY09616.1" /db_xref="Phytozome:GSVIVT01033430001" /db_xref="TAIR:AT3G11964.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HLF1" /translation="MLDDLGSLFGDGITGKLPRYANKITLKNISPGMKLWGVVAEVNE KDLVISLPGGLRGLVRAADALDSVLSNEVENNEGNFLTNIFCTGQLVSCIVLQLDDDK KETGKRKIWLSLRLSLLHKSFTLDAVQEGMVLTAYVKSIEDHGYILHFGLSSFMGFLP KDDEESRDIKVRTGQFLQGVVRRIDKTRKVVYLSSNPDTVSKCVTKDLKGISIDLLIP GMLVNTSVRSILENGVMLSFLTYFTGTVDMFHLQNQFPTKDWKDDYNQNKKINARILF IDPSTRAVGLTLNPHLVHNKAPPSHVNIGEIYDQSKVIRVDRGLGLLLDIPSKPVSTP AYVYISDVAEEEVRKLEKKFKEGSQVRVRIHGFRHLEGLATGILKASAFEGQVFTHSD VKPGMVIRAKVIALDSFSAIVQFPGGVKALCPIRHMSEFEIAKPGKKFKVGAELVFRV LGCKSKRITVTHKKTLVKSKLGIISSYADATEGFITHGWITKIEKHGCFVRFYNGVQG FAPRSELGLGPGYDPSSMYHVGQVIKCRVTSSNPASRRINLSFQMKPVRVSEDDLVKL GSIVSGLIDRLTPSAVVIQVNSKAHLKGTISNEHLADNHESAALLKSVLKPGYKFDQL LVLDIEGNNILLSAKYSLTSLAEQLPSDISQIHPNSVVHGYVCNLIETGCFVRFLGRL TGFSPRSKSTDDYKADLSGAFYVGQSVRSNILDVNSETARITLSLKQSSCSSTDASFI QEFFLLEEKIAKLQSSDSDGSELKWVEGFNVGSVIEGKIGEAKDIGVVVSFDKYNDVL GFVTHYQLGGLTLETGSIVQAAVLDVAKAERLVDLSLKPEFVDKSQEESSKGQIQKKK RKREASKDLEVHQTVNAVVEIVKEHYLVLAIPEYNYAIGYASKADYNTQKFPQKQFVN GQRVIATVMALPSPTTSGRLLLLLNSISEVTETSSSKRAKKKSSYSVGSLVSAEVTEI MPLELRLKFGIGFRGRVHVTEVNDDNVLENPFGNFKIGQTITARVVGKANQKGYLWDL SIKPTMLAGTGETGVNSTNDECNFSAGQLVTGYVYKMDTEWAWLTISRHVKAQLYILD SAREPNELQQFQERFKVGKAVSGHVLNVNKDKKLLRLVRHPLGALSIRNVHGEDKRTG ESDNNISGESVTTHIHEGDILGGRISKILPGVGGLLVQIGPHIFGRVHFTELKDTWES DPLSGYYEGQFVKCKVLEISHSVKGTIHIDLSLRLSLDGMLPNNPSELGSDEDSTSKR VEKIEDLYPNMAIQGYVKNTIPKGCFILLSRKLDAKILLSNLSDGYIDDPKKEFPIGK LVAGRLDCAMSQSFQMITLITSKLNTEQGKRLQQRY" mobile_element 30248574..30248614 /note="source:scaffold_5_CACTA_0596 7038 7079" /mobile_element_type="transposon:TIR/CACTA" gene complement(30249295..30250532) /locus_tag="TCM_025028" /note="dbxref CacaoGD:Thecc1EG025028" mRNA complement(join(30249295..30249761,30249831..30249921, 30250066..30250532)) /locus_tag="TCM_025028" /product="Alpha/beta-Hydrolases superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033429001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037927t1" /inference="similar to AA sequence:ricco:27553.m000319" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.36 coverage" CDS complement(join(30249486..30249761,30249831..30249921, 30250066..30250286)) /locus_tag="TCM_025028" /note="dbxref ricco:27553.m000319; paralog of Thecc1EG037927t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein, putative" /protein_id="EOY09617.1" /db_xref="TAIR:AT3G24420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IID9" /translation="MVFSPNVDPKLFDPNRHDSTFSGYADDLVCLLDQLHVNLTIYLG HSMAAMVGCMAAINRPQLFPHLILLSGSPRYNNDEGYQGGFERSQIDAIYRNIDENFL GWPGEDETRDALDVATTVFSSDLRTRLPQVLVPCTIIQSREDNVVPESEACYMKSKIG GDAEVMILDPHGHFPHLTAYHLLFKVLKVALHLKE" gene complement(30251912..30266231) /locus_tag="TCM_025029" /note="dbxref CacaoGD:Thecc1EG025029" mRNA complement(join(30251912..30253091,30253492..30253600, 30255353..30255492,30256645..30256721,30258111..30258252, 30258438..30258593,30258685..30259000,30259174..30259484, 30261138..30263127,30263258..30263418,30263526..30263613, 30263763..30263846,30263968..30264047,30264257..30264391, 30265810..30266158)) /locus_tag="TCM_025029" /product="Cleavage and polyadenylation specificity factor (CPSF) A subunit protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s21160.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033428001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc370t8" mRNA complement(join(30251953..30252371,30258111..30258252, 30258438..30258593,30258685..30259000,30259174..30259484, 30261138..30263127,30263258..30263418,30263526..30263613, 30263763..30263846,30263968..30264047)) /locus_tag="TCM_025029" /product="Cleavage and polyadenylation specificity factor (CPSF) A subunit protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s21160.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033428001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc292t14; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc292t14; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc379t10" CDS complement(join(30252316..30252371,30258111..30258252, 30258438..30258593,30258685..30259000,30259174..30259484, 30261138..30263127,30263258..30263418,30263526..30263613, 30263763..30263846,30263968..30264047)) /locus_tag="TCM_025029" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Cleavage and polyadenylation specificity factor (CPSF) A subunit protein isoform 4" /protein_id="EOY09621.1" /db_xref="Phytozome:GSVIVT01033428001" /db_xref="TAIR:AT3G11960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B7Q5" /translation="MRGKDLLIVISDSGKLSFLTFCIEMHRFFPVAHVQLSDPGNSRH QLGRMLAVDSTGCFIATSAYEDRLALFSLSMSAGDDIIDERIFYPPENEGSVSSTRSA QRTSIRGTIWSMCFVSKDSFQPNKEHNPVLAIVLNRKGNALNELVLLGWNIKERAVYV VSQYLEAGPLAHSIVEVPHSCGFAFLLRVGDALLMDLSDAHNPHCVYRTTLNFSGHTL EEQNFIEDSFRAHDVDDEGLFNVAACALLQLSDYDPMCIDGDSGNGKFTCKHVCSFSW EPKSDRSPRMIFCLDTGEFFMIEISFDSDNPKVNISDCLYRGQPCKSLLWVDGGFLVA IVEMGDGLVLKVENERLIYTSPIQNIAPILDMSIVDYHGEKRDEMFACCGVAPEGSLR IIQSGISVEKLLKTAAIYQGITGTWTVQMKVEDSYHSFLVLSFVEETRVLSVGLSFTD VTDSVGFQPDVCTLACGLVGDGQLVQIHQNAIRLCLPTKAAHSEGIPLSSPVCTSWSP DNISISLGAVGQNLIVVSTSNPYFLFILGVRSLSAYHHEIYELQHVKLRYELSCISIP KKHFEPRHSSSSLNPVDNIHTAVLPVGVGMGITFVIGTHRPSVEILSFTPQGLRVLAT GTISLASAMETAVSGCIPQDVRLVLVDQFYVLSGLRNGMLLRFEWPSAVATSSSECCS STSPLPENVDRVLLNTKTANLFGSEICAVNVSEKDDLPINLQLIATRRIGITPVFLVP LSDSLDADIIALSDRPWLLHTARHSLSYTSISFQPSTHATPVCSAECPKGILFVTENS LHLVEMVHGNRLNVQKFHLGGTPRKVLYHSESKLLIVMRTDLSNDTCSSDICCVDPLT VSVVASFKLELGETGKCMELVRAGNEQVLVVGTSLSPGPAIMPSGEAESTKGRLIVLC IEHVQNSDSGSMTFSSMAGSSSQRNSPFCEIVGHANEQLSSSSICSSPDDTSCDGIKL EETEAWQLRLAYATTWPAMVLAICPYLDHYFLASAGNTFYVCAFLSGNPQRVRRFALA RTRFMIMSLTAHSTRIAVGDCRDGILFYSYHEETKKLDQTYCDPSQRLVADCVLTDVD TAVVSDRKGSVAVLSCSDRLEGSEAVKSLAFSRLWSLWL" mRNA complement(join(30252460..30253092,30256647..30256721, 30258111..30258252,30258438..30258593,30258685..30259000, 30259174..30259484,30261138..30263127,30263258..30263418, 30263526..30263613,30263763..30263846,30263968..30264047, 30264257..30264391,30265810..30266231)) /locus_tag="TCM_025029" /product="Cleavage and polyadenylation specificity factor (CPSF) A subunit protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s21160.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033428001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc379t10; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc379t10; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc370t8" CDS complement(join(30252894..30253091,30253492..30253600, 30255353..30255492,30256645..30256721,30258111..30258252, 30258438..30258593,30258685..30259000,30259174..30259484, 30261138..30263127,30263258..30263418,30263526..30263613, 30263763..30263846,30263968..30264047,30264257..30264391, 30265810..30265998)) /locus_tag="TCM_025029" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Cleavage and polyadenylation specificity factor (CPSF) A subunit protein isoform 1" /protein_id="EOY09618.1" /db_xref="Phytozome:GSVIVT01033428001" /db_xref="TAIR:AT3G11960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B7Q5" /translation="MALSEEECSTAKASSSSPSSSSATASSQGVNYLAKCVLRGSVVL QVAYGHLRSPSSFDVVFGKETSIELVIMGEDGIVTSICEQTVFGTIKDLAILPWNEKV CARNPQMRGKDLLIVISDSGKLSFLTFCIEMHRFFPVAHVQLSDPGNSRHQLGRMLAV DSTGCFIATSAYEDRLALFSLSMSAGDDIIDERIFYPPENEGSVSSTRSAQRTSIRGT IWSMCFVSKDSFQPNKEHNPVLAIVLNRKGNALNELVLLGWNIKERAVYVVSQYLEAG PLAHSIVEVPHSCGFAFLLRVGDALLMDLSDAHNPHCVYRTTLNFSGHTLEEQNFIED SFRAHDVDDEGLFNVAACALLQLSDYDPMCIDGDSGNGKFTCKHVCSFSWEPKSDRSP RMIFCLDTGEFFMIEISFDSDNPKVNISDCLYRGQPCKSLLWVDGGFLVAIVEMGDGL VLKVENERLIYTSPIQNIAPILDMSIVDYHGEKRDEMFACCGVAPEGSLRIIQSGISV EKLLKTAAIYQGITGTWTVQMKVEDSYHSFLVLSFVEETRVLSVGLSFTDVTDSVGFQ PDVCTLACGLVGDGQLVQIHQNAIRLCLPTKAAHSEGIPLSSPVCTSWSPDNISISLG AVGQNLIVVSTSNPYFLFILGVRSLSAYHHEIYELQHVKLRYELSCISIPKKHFEPRH SSSSLNPVDNIHTAVLPVGVGMGITFVIGTHRPSVEILSFTPQGLRVLATGTISLASA METAVSGCIPQDVRLVLVDQFYVLSGLRNGMLLRFEWPSAVATSSSECCSSTSPLPEN VDRVLLNTKTANLFGSEICAVNVSEKDDLPINLQLIATRRIGITPVFLVPLSDSLDAD IIALSDRPWLLHTARHSLSYTSISFQPSTHATPVCSAECPKGILFVTENSLHLVEMVH GNRLNVQKFHLGGTPRKVLYHSESKLLIVMRTDLSNDTCSSDICCVDPLTVSVVASFK LELGETGKCMELVRAGNEQVLVVGTSLSPGPAIMPSGEAESTKGRLIVLCIEHVQNSD SGSMTFSSMAGSSSQRNSPFCEIVGHANEQLSSSSICSSPDDTSCDGIKLEETEAWQL RLAYATTWPAMVLAICPYLDHYFLASAGNTFYVCAFLSGNPQRVRRFALARTRFMIMS LTAHSTRIAVGDCRDGILFYSYHEETKKLDQTYCDPSQRLVADCVLTDVDTAVVSDRK GSVAVLSCSDRLEDNASPERNLTLTSAYYMGEIAMSIRKGSFIYKLPADDMLNSCEGL NASVDPSHGTIMASTLLGSIMIFIPISREEHELLEAVQARLIVHPLTAPVLGNDHNEY RSCENPAGVPKILDGDMLAQFLELTSMQQEAVLSFSIVSPDTHKLSSKQPPSPIPVKK VVQLLERVHYALN" CDS complement(join(30253055..30253092,30256647..30256721, 30258111..30258252,30258438..30258593,30258685..30259000, 30259174..30259484,30261138..30263127,30263258..30263418, 30263526..30263613,30263763..30263846,30263968..30264047, 30264257..30264391,30265810..30265998)) /locus_tag="TCM_025029" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Cleavage and polyadenylation specificity factor (CPSF) A subunit protein isoform 3" /protein_id="EOY09620.1" /db_xref="Phytozome:GSVIVT01033428001" /db_xref="TAIR:AT3G11960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B7Q5" /translation="MALSEEECSTAKASSSSPSSSSATASSQGVNYLAKCVLRGSVVL QVAYGHLRSPSSFDVVFGKETSIELVIMGEDGIVTSICEQTVFGTIKDLAILPWNEKV CARNPQMRGKDLLIVISDSGKLSFLTFCIEMHRFFPVAHVQLSDPGNSRHQLGRMLAV DSTGCFIATSAYEDRLALFSLSMSAGDDIIDERIFYPPENEGSVSSTRSAQRTSIRGT IWSMCFVSKDSFQPNKEHNPVLAIVLNRKGNALNELVLLGWNIKERAVYVVSQYLEAG PLAHSIVEVPHSCGFAFLLRVGDALLMDLSDAHNPHCVYRTTLNFSGHTLEEQNFIED SFRAHDVDDEGLFNVAACALLQLSDYDPMCIDGDSGNGKFTCKHVCSFSWEPKSDRSP RMIFCLDTGEFFMIEISFDSDNPKVNISDCLYRGQPCKSLLWVDGGFLVAIVEMGDGL VLKVENERLIYTSPIQNIAPILDMSIVDYHGEKRDEMFACCGVAPEGSLRIIQSGISV EKLLKTAAIYQGITGTWTVQMKVEDSYHSFLVLSFVEETRVLSVGLSFTDVTDSVGFQ PDVCTLACGLVGDGQLVQIHQNAIRLCLPTKAAHSEGIPLSSPVCTSWSPDNISISLG AVGQNLIVVSTSNPYFLFILGVRSLSAYHHEIYELQHVKLRYELSCISIPKKHFEPRH SSSSLNPVDNIHTAVLPVGVGMGITFVIGTHRPSVEILSFTPQGLRVLATGTISLASA METAVSGCIPQDVRLVLVDQFYVLSGLRNGMLLRFEWPSAVATSSSECCSSTSPLPEN VDRVLLNTKTANLFGSEICAVNVSEKDDLPINLQLIATRRIGITPVFLVPLSDSLDAD IIALSDRPWLLHTARHSLSYTSISFQPSTHATPVCSAECPKGILFVTENSLHLVEMVH GNRLNVQKFHLGGTPRKVLYHSESKLLIVMRTDLSNDTCSSDICCVDPLTVSVVASFK LELGETGKCMELVRAGNEQVLVVGTSLSPGPAIMPSGEAESTKGRLIVLCIEHVQNSD SGSMTFSSMAGSSSQRNSPFCEIVGHANEQLSSSSICSSPDDTSCDGIKLEETEAWQL RLAYATTWPAMVLAICPYLDHYFLASAGNTFYVCAFLSGNPQRVRRFALARTRFMIMS LTAHSTRIAVGDCRDGILFYSYHEETKKLDQTYCDPSQRLVADCVLTDVDTAVVSDRK GSVAVLSCSDRLEDNASPERNLTLTSAYYMGEIAMSIRRLEYQRYSTVTC" mRNA complement(join(<30253493..30253600,30255353..30255492, 30256645..30256721,30258111..30258252,30258438..30258593, 30258685..30259000,30259174..30259484,30261138..30263127, 30263258..30263418,30263526..30263613,30263763..30263846, 30263968..30264047,30264227..>30264286)) /locus_tag="TCM_025029" /product="Cleavage and polyadenylation specificity factor (CPSF) A subunit protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s21160.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033428001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial; similar to RNA sequence, EST 0.58 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc363t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc370t8; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc379t10" CDS complement(join(<30253495..30253600,30255353..30255492, 30256645..30256721,30258111..30258252,30258438..30258593, 30258685..30259000,30259174..30259484,30261138..30263127, 30263258..30263418,30263526..30263613,30263763..30263846, 30263968..30264047,30264227..>30264286)) /locus_tag="TCM_025029" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Cleavage and polyadenylation specificity factor (CPSF) A subunit protein isoform 2" /protein_id="EOY09619.1" /db_xref="Phytozome:GSVIVT01033428001" /db_xref="TAIR:AT3G11960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B7Q5" /translation="NEKVCARNPQVCTETYNGSIMRGKDLLIVISDSGKLSFLTFCIE MHRFFPVAHVQLSDPGNSRHQLGRMLAVDSTGCFIATSAYEDRLALFSLSMSAGDDII DERIFYPPENEGSVSSTRSAQRTSIRGTIWSMCFVSKDSFQPNKEHNPVLAIVLNRKG NALNELVLLGWNIKERAVYVVSQYLEAGPLAHSIVEVPHSCGFAFLLRVGDALLMDLS DAHNPHCVYRTTLNFSGHTLEEQNFIEDSFRAHDVDDEGLFNVAACALLQLSDYDPMC IDGDSGNGKFTCKHVCSFSWEPKSDRSPRMIFCLDTGEFFMIEISFDSDNPKVNISDC LYRGQPCKSLLWVDGGFLVAIVEMGDGLVLKVENERLIYTSPIQNIAPILDMSIVDYH GEKRDEMFACCGVAPEGSLRIIQSGISVEKLLKTAAIYQGITGTWTVQMKVEDSYHSF LVLSFVEETRVLSVGLSFTDVTDSVGFQPDVCTLACGLVGDGQLVQIHQNAIRLCLPT KAAHSEGIPLSSPVCTSWSPDNISISLGAVGQNLIVVSTSNPYFLFILGVRSLSAYHH EIYELQHVKLRYELSCISIPKKHFEPRHSSSSLNPVDNIHTAVLPVGVGMGITFVIGT HRPSVEILSFTPQGLRVLATGTISLASAMETAVSGCIPQDVRLVLVDQFYVLSGLRNG MLLRFEWPSAVATSSSECCSSTSPLPENVDRVLLNTKTANLFGSEICAVNVSEKDDLP INLQLIATRRIGITPVFLVPLSDSLDADIIALSDRPWLLHTARHSLSYTSISFQPSTH ATPVCSAECPKGILFVTENSLHLVEMVHGNRLNVQKFHLGGTPRKVLYHSESKLLIVM RTDLSNDTCSSDICCVDPLTVSVVASFKLELGETGKCMELVRAGNEQVLVVGTSLSPG PAIMPSGEAESTKGRLIVLCIEHVQNSDSGSMTFSSMAGSSSQRNSPFCEIVGHANEQ LSSSSICSSPDDTSCDGIKLEETEAWQLRLAYATTWPAMVLAICPYLDHYFLASAGNT FYVCAFLSGNPQRVRRFALARTRFMIMSLTAHSTRIAVGDCRDGILFYSYHEETKKLD QTYCDPSQRLVADCVLTDVDTAVVSDRKGSVAVLSCSDRLEDNASPERNLTLTSAYYM GEIAMSIRKGSFIYKLPADDMLNSCEGLNASVDPSHGTIMASTLLGSIMIFIPISREE HELLEAVQARLIVHPLTAPVLGNDHNEYRSCEN" gene complement(30268411..30270404) /locus_tag="TCM_025030" /note="dbxref CacaoGD:Thecc1EG025030" mRNA complement(join(30268411..30268519,30269146..30269219, 30269316..30269482,30269891..30269960,30270068..30270219)) /locus_tag="TCM_025030" /product="Mediator of RNA polymerase II transcription subunit 7 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06270.1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400017385" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc176t1; inference alignment:Newbler:10:TSA:cgbaP2_g12705t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc243t3" CDS complement(join(30268459..30268519,30269146..30269219, 30269316..30269482,30269891..30269960,30270068..30270202)) /locus_tag="TCM_025030" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Mediator of RNA polymerase II transcription subunit 7 isoform 3" /protein_id="EOY09624.1" /db_xref="Phytozome:PGSC0003DMP400017385" /db_xref="TAIR:AT5G03500.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZD7" /translation="MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYVCFGGSY TTDDLLPSLEEQGVRQLYPKGPNVDFKKELRSLNRELQLHILELADVLVERPSQYARR VEEISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQALEDIKSRREEAQRLLKE SLGTLDGQ" mRNA complement(join(30268496..30268519,30268622..30268703, 30269146..30269219,30269316..30269482,30269891..30269960, 30270068..30270404)) /locus_tag="TCM_025030" /product="Mediator of RNA polymerase II transcription subunit 7 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06270.1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400017385" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc243t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc243t3" mRNA complement(join(<30268496..30268519,30268622..30268708, 30269146..30269219,30269316..30269482,30269891..30269960, 30270068..30270404)) /locus_tag="TCM_025030" /product="Mediator of RNA polymerase II transcription subunit 7 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06270.1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400017385" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc243t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc243t3; inference alignment:Newbler:10:TSA:cgbaP2_g12705t00001" CDS complement(join(<30268498..30268519,30268622..30268708, 30269146..30269219,30269316..30269482,30269891..30269960, 30270068..30270202)) /locus_tag="TCM_025030" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Mediator of RNA polymerase II transcription subunit 7 isoform 2" /protein_id="EOY09623.1" /db_xref="Phytozome:PGSC0003DMP400017385" /db_xref="TAIR:AT5G03500.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZD7" /translation="MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYVCFGGSY TTDDLLPSLEEQGVRQLYPKGPNVDFKKELRSLNRELQLHILELADVLVERPSQYARR VEEISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQALEDIKSLGMWLEFLGKE AMWLWSQNWLWFGCANSCRREEAQR" CDS complement(join(30268628..30268703,30269146..30269219, 30269316..30269482,30269891..30269960,30270068..30270202)) /locus_tag="TCM_025030" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Mediator of RNA polymerase II transcription subunit 7 isoform 1" /protein_id="EOY09622.1" /db_xref="Phytozome:PGSC0003DMP400017385" /db_xref="TAIR:AT5G03500.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LZD7" /translation="MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYVCFGGSY TTDDLLPSLEEQGVRQLYPKGPNVDFKKELRSLNRELQLHILELADVLVERPSQYARR VEEISLIFKNLHHLLNSLRPHQARATLIHILELQIQRRKQALEDIKRYVAGVSWKGSH VVMEPELVVVWLC" gene 30270558..30275043 /locus_tag="TCM_025031" /note="dbxref CacaoGD:Thecc1EG025031" mRNA join(30270558..30270787,30271700..30272635, 30273735..30275043) /locus_tag="TCM_025031" /product="TRAF-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06280.1" /inference="similar to AA sequence:ricco:29769.m000449" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05504t00001" CDS join(30270779..30270787,30271700..30272635, 30273735..30274454) /locus_tag="TCM_025031" /note="dbxref ricco:29769.m000449" /codon_start=1 /product="TRAF-like superfamily protein, putative" /protein_id="EOY09625.1" /db_xref="TAIR:AT3G11950.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIE1" /translation="MMEESATTDPPASDVELVPEKIKDAKEGGPAFHCDLCDIELVYK IAQAFFPGLATACVDNTTGDVFRSPGSVAAEIRKEMVDYLTQRSETFVAESVVLEAGP EAEASDHPYDIIACFIDDFASSKRNLFSRVSGWLLSDKREDKIDDFAQEMEINGFWSI DKREAIVQTLLKNVDFKNAFHCDMKFQSADELALHVSACGYRLMNCENEGCNARFSAN QAEKHDAVCPFKIIPCEQKCSDSIMRREMDRHCITVCPMKLVNCPFYASGCQSAIPHY KIEEHRSTNLHSHLLYILQGIHKEASVEVLKERVEQLEKSSSGKLADIRDVRSLTFRV KDLDAQLGPLVVTATNKINEEATEAAAKLESVEASDTNKDVEKAVQMEVKVSEAKPPS LEVAPTNKDSEEATKTEIKDSEAKLQSLEVAPTNKDSEEATKTEIKDSEARLQSLEVA PTNKDSEEALKIEVKDAEAKPQSSEDDTTNEDREEAAERIVNYSEARPPSLEVTPTNK VNEAAIENSVKEVEETLRPSEVHTTNRTSEDEGMETSEHIPNKVER" mobile_element 30274978..30275076 /note="source:scaffold_5_CACTA_0580 5412 5517" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(30275062..30275222) /note="source:CACAO_on_E325_scaffold_10 207 389" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(30275075..30275201) /note="source:CACAO_MITE152_scaffold_9 230 371" /mobile_element_type="transposon:TIR/MITE" mobile_element 30275077..30275108 /note="source:CACAO_Mariner_E220_scaffold_9 9004 9144" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 30275202..30275255 /note="source:CACAO_on_E683_scaffold_9 43 262" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(30275746..30275979) /note="source:scaffold_7_CACTA_0795 2861 3137" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(30275919..30275986) /note="source:CACAO_PIF_E119_scaffold_3 4227 4295" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(30276709..30276798) /note="source:scaffold_10_CACTA_0127 7399 7484" /mobile_element_type="transposon:TIR/CACTA" gene 30276950..30277691 /locus_tag="TCM_025032" /note="dbxref CacaoGD:Thecc1EG025032" mRNA 30276950..30277691 /locus_tag="TCM_025032" /product="Calcium-binding EF-hand family protein" /inference="alignment:exonerate- protein:2:ricco:30226.m002037" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002257t1" /inference="similar to AA sequence:ricco:30226.m002037" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g13822t00001" CDS 30277013..30277441 /locus_tag="TCM_025032" /note="dbxref ricco:30226.m002037; paralog of Thecc1EG002257t1" /codon_start=1 /product="Calcium-binding EF-hand family protein" /protein_id="EOY09626.1" /db_xref="TAIR:AT2G44310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PCU6" /translation="MGVVIIDGSTVRAFVTDEEQFKKSMDESFAALDLNNDGVLSRSE LRKAFESLRLIETHFGVDVATSPEQLTQLYDSIFDKFDCDGSGSVDLPEFRSEMKKIL LAIADGLGSCPIQMALEDDDQSFLKKAADLEAAKLEAQAS" gene complement(30277764..30282150) /locus_tag="TCM_025033" /note="dbxref CacaoGD:Thecc1EG025033" mRNA complement(join(30277764..30279106,30279481..30281262, 30281393..30281451,30281817..30282150)) /locus_tag="TCM_025033" /product="Eukaryotic translation initiation factor 3 subunit C2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0002s01840.1" /inference="similar to AA sequence:frave:gene12112" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14263t1" CDS complement(join(30278156..30279106,30279481..30281262, 30281393..30281416)) /locus_tag="TCM_025033" /note="dbxref frave:gene12112" /codon_start=1 /product="Eukaryotic translation initiation factor 3 subunit C2" /protein_id="EOY09627.1" /db_xref="TAIR:AT3G56150.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O49160" /translation="MASRFWTQGGSDTEEEESDFEDEIENGGAGDIVVTESGSRYLQG NASDSDDSDGQKRVVRSAKDKRFEEMTVTVDQMKNAMKINDWVSLQESFDKINKQLEK VMRVTESDRVPNLYIKCLVMLEDFLAQALANKEAKKKMSSSNAKALNSMKQKLKKNNK QYEELINKHRENPESEEEKDEDEESDESGSEFEDPLQIAESTDEEDEGEEPEDDAADG AWEKKLSRKDKLMDREFKKDPSEITWDTVNKKFKEVVAARGRKGTGKFEQVEQLTFLT KVAKTPAQKLEILFSVISAQFDVNPGLSGHMPINVWKKCVQNMLVILDILVQYPNIVV DDMVEPDENETQKGADYNGTIRVWGNLVAFLERIDNEFFKSLQCIDPHTREYVERLRD EPMFLVLAQNVQEYFERSGDLKSAAKVALRRVELVYYKPQEVYDAMRKLAELSEDADG EKDGDEPKVEESRGPSAFVVTPELVSRKPSFPENSRALMDILVSLIYKSGDDRTKARA MLCDIYHHALFDEFSVARDLLLMSHLQDKIQHMDVSTQILFNRAMAQVGLCAVRVGLI AEGHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEA VHLICAMLLEVPNMAANTLDAKRKVISKTFRRLLEMSERQTFTGPPENVRDHVMAATR ALCRGDFQKAFDVINSLDVWKLLRNRENVLDMLKAKIKEEALRTYLFTYCSSYDSLSL DQLTKMFDLSDSQTHSIVSKMMINEELHASWDQPTRCIVFYDVEHSRLQALAFQLTEK LSVLAESNERAVEARIGGGGLDLPLRRRDNQEFAAGTAAVGRWQDLPFTQGRQGSSGR SGYSAGGRPLALGQTAGGGYSRDRSGQSRGLGGYSGRTGLGMRGSQMDASARMVNLHR GVRG" gene 30282571..30291961 /locus_tag="TCM_025034" /note="dbxref CacaoGD:Thecc1EG025034" mRNA join(30282571..30282915,30286857..30287307, 30288293..30288832,30289014..30289128,30289209..30289274, 30289363..30289451,30289546..30289633,30289893..30290132, 30290229..30290330,30290816..30291961) /locus_tag="TCM_025034" /product="Calmodulin-binding family protein" /inference="alignment:exonerate- protein:2:ricco:27553.m000324" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040035t1" /inference="similar to AA sequence:ricco:27553.m000324" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1052t1" CDS join(30288354..30288832,30289014..30289128, 30289209..30289274,30289363..30289451,30289546..30289633, 30289893..30290132,30290229..30290330,30290816..30291526) /locus_tag="TCM_025034" /note="dbxref ricco:27553.m000324; paralog of Thecc1EG040035t1" /codon_start=1 /product="Calmodulin-binding family protein" /protein_id="EOY09628.1" /db_xref="TAIR:AT3G58480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GUK4" /translation="MGVTFSCPLSDLDDLDSRFEAVIVKSISFKDEDVKKALRSVSFN GRVSEPKVMQSYGSRKMILEGSLSLNKRETETMLSYNAPSSEKKNNLSVRLESCKNAN NHNILQRSQSLTEKKPHSQVSEVGGRRCEAALKLQKVYKSFRTRRQLADCAVVVEQRW WKLLDFAELKRSSISFFEIEKPETAISRWSRARTRAAKVGKGLSKDEKARKLALQHWL EAIDPRHRYGHNLQFYYAKWLHCDSKQPFFYWLDIGEGKEVNLEKCPRLKLQQQCIKY LGPTERETYEVVIKNGKFVYKQTGKLLDTTGGPKDAKWIFVLSAFKILYVGQKSKGTF QHSSFLAGGATLSAGRLVVEDGVLKAVWPHSGHYLPTEENFLEFMSFLQEHNVDLTNV KKSPSEEEETITRKNSSLRSNESKAESSQQTQATNSENSAHESTDSRKQDCDDAENAN KSMTRLSRGSLSKISKLQIPARHDVFDIFKTQALPPSCRCERPESPMDDGYETAEEFL SEEDFMFTKINLYGEDDDEEDEKPIPKEKIMKRIDSHKGMKSYQLAQQLSSKWSTGAG PRISCMRDYPSELQVRVLEQANLSPRARSASTSPRTTSRFSPKVMTPTSLHKETSSSR SPLVS" gene complement(30292051..30298923) /locus_tag="TCM_025035" /note="dbxref CacaoGD:Thecc1EG025035" mRNA complement(join(30292051..30292502,30292961..30293010, 30294465..30294497,30294917..30294979,30295128..30295245, 30295570..30295662,30296439..30296512,30296969..30297194, 30297633..30297779,30297878..30297999,30298645..30298923)) /locus_tag="TCM_025035" /product="Homogentisate prenyltransferase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s21200.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s21200.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7051t3" CDS complement(join(30292499..30292502,30292961..30293010, 30294465..30294497,30294917..30294979,30295128..30295245, 30295570..30295662,30296439..30296512,30296969..30297194, 30297633..30297779,30297878..30297999,30298645..30298869)) /locus_tag="TCM_025035" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Homogentisate prenyltransferase isoform 1" /protein_id="EOY09629.1" /db_xref="Phytozome:POPTR_0006s21200.1" /db_xref="TAIR:AT3G11945.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1ACB3" /translation="MEFSLSLSSSIGISAVNPHCKASSCQAKTIPAKLNGKISYLSLR CAGNVVSVGLYSHTSCSKHVPTRQFKRNPIWACGQVGAAGSDPMLNKISTFKDACWRF LRPHTIRGTALGSVALVARALIENSNLIKWSLLLKAFLGIVALICGNGYIVGINQIYD IGIDKVNKPYLPIAAGDLSVQSAWFLVIGFAMTGLLIVGSNFGPFITSLYSLGLFLGT IYSVPPFRMKRFPVAAFLIIAMVRGFLLNFGVYYATRAALGLPFQWSAPVAFITTFVT LFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAFLGSGLLLVNYVAAVLAAIYMP QVFRRSLMIPAHIFLALCLIFQAWVLEQANYTKEAISGFYRFIWNLFYAE" mRNA complement(join(30292714..30293010,30294465..30294497, 30294917..30295245,30295570..30295662,30296439..30296512, 30296969..30297194,30297633..30297779,30297878..30297999, 30298645..>30298762)) /locus_tag="TCM_025035" /product="Homogentisate prenyltransferase isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s21200.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s21200.1" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1223t5_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7051t3; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1263t3_C2" mRNA complement(join(30292714..30293010,30294465..30294497, 30294917..30294979,30295128..30295245,30295570..30295662, 30296439..30296512,30296969..30297194,30297633..30297802, 30297878..30297999,30298645..30298762)) /locus_tag="TCM_025035" /product="Homogentisate prenyltransferase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s21200.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s21200.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1223t3_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7051t3; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1263t3_C2" mRNA complement(join(30292747..30293010,30294465..30294497, 30294917..30294979,30295128..30295245,30295570..30295662, 30296439..30296512,30296969..30297194,30297878..30297999, 30298645..30298923)) /locus_tag="TCM_025035" /product="Homogentisate prenyltransferase isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s21200.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s21200.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:PASA:2:TSA:puevd3b024221t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7051t3" mRNA complement(join(30292769..30293010,30294465..30294500, 30294917..30294979,30295128..30295245,30295570..30295662, 30296439..30296512,30296969..30297194,30297633..30297779, 30297878..30297999,30298645..30298911)) /locus_tag="TCM_025035" /product="Homogentisate prenyltransferase isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s21200.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s21200.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7051t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7051t3; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1263t3_C2" mRNA complement(join(30292769..30293010,30294464..30294497, 30294917..30294982,30295128..30295245,30295570..30295662, 30296439..30296512,30296969..30297194,30297633..30297802, 30297878..30297999,30298645..30298911)) /locus_tag="TCM_025035" /product="Homogentisate prenyltransferase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s21200.1" /inference="similar to AA sequence:TAIR:AT3G11945.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7051t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7051t3; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1263t3_C2" CDS complement(join(30292936..30293010,30294465..30294497, 30294917..30294979,30295128..30295245,30295570..30295662, 30296439..30296512,30296969..30297194,30297878..30297999, 30298645..30298869)) /locus_tag="TCM_025035" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Homogentisate prenyltransferase isoform 6" /protein_id="EOY09634.1" /db_xref="Phytozome:POPTR_0006s21200.1" /db_xref="TAIR:AT3G11945.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1ACB3" /translation="MEFSLSLSSSIGISAVNPHCKASSCQAKTIPAKLNGKISYLSLR CAGNVVSVGLYSHTSCSKHVPTRQFKRNPIWACGQVGAAGSDPMLNKISTFKDACWRF LRPHTIRGTALGSVVNKPYLPIAAGDLSVQSAWFLVIGFAMTGLLIVGSNFGPFITSL YSLGLFLGTIYSVPPFRMKRFPVAAFLIIAMVRGFLLNFGVYYATRAALGLPFQWSAP VAFITTFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAFLGSGLLLVNYVA AVLAAIYMPQVFRRSLMIPAHIFLALCLIFQAWVLEQANYTKEAISGFYRFIWNLFYA EYAIFPFI" CDS complement(join(30292936..30293010,30294465..30294500, 30294917..30294979,30295128..30295245,30295570..30295662, 30296439..30296512,30296969..30297194,30297633..30297779, 30297878..30297999,30298645..30298869)) /locus_tag="TCM_025035" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Homogentisate prenyltransferase isoform 4" /protein_id="EOY09632.1" /db_xref="Phytozome:POPTR_0006s21200.1" /db_xref="TAIR:AT3G11945.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1ACB3" /translation="MEFSLSLSSSIGISAVNPHCKASSCQAKTIPAKLNGKISYLSLR CAGNVVSVGLYSHTSCSKHVPTRQFKRNPIWACGQVGAAGSDPMLNKISTFKDACWRF LRPHTIRGTALGSVALVARALIENSNLIKWSLLLKAFLGIVALICGNGYIVGINQIYD IGIDKVNKPYLPIAAGDLSVQSAWFLVIGFAMTGLLIVGSNFGPFITSLYSLGLFLGT IYSVPPFRMKRFPVAAFLIIAMVRGFLLNFGVYYATRAALGLPFQWSAPVAFITTFVT LFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAFLGSGLLLVNYVAAVLAAIYMP QVFRRSLMIPAHIFLALCLIFQQAWVLEQANYTKEAISGFYRFIWNLFYAEYAIFPFI " CDS complement(join(30292936..30293010,30294465..30294497, 30294917..30294979,30295128..30295245,30295570..30295662, 30296439..30296512,30296969..30297194,30297633..30297802, 30297878..30297931)) /locus_tag="TCM_025035" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Homogentisate prenyltransferase isoform 2" /protein_id="EOY09630.1" /db_xref="Phytozome:POPTR_0006s21200.1" /db_xref="TAIR:AT3G11945.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1ACB3" /translation="MLEVFEAPYNTWNSSRISFVVNSIDSALVARALIENSNLIKWSL LLKAFLGIVALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIGFAM TGLLIVGSNFGPFITSLYSLGLFLGTIYSVPPFRMKRFPVAAFLIIAMVRGFLLNFGV YYATRAALGLPFQWSAPVAFITTFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGV RNIAFLGSGLLLVNYVAAVLAAIYMPQVFRRSLMIPAHIFLALCLIFQAWVLEQANYT KEAISGFYRFIWNLFYAEYAIFPFI" CDS complement(join(30292961..30293010,30294464..30294497, 30294917..30294982,30295128..30295245,30295570..30295662, 30296439..30296512,30296969..30297194,30297633..30297802, 30297878..30297931)) /locus_tag="TCM_025035" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Homogentisate prenyltransferase isoform 3" /protein_id="EOY09631.1" /db_xref="TAIR:AT3G11945.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1ACB3" /translation="MLEVFEAPYNTWNSSRISFVVNSIDSALVARALIENSNLIKWSL LLKAFLGIVALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIGFAM TGLLIVGSNFGPFITSLYSLGLFLGTIYSVPPFRMKRFPVAAFLIIAMVRGFLLNFGV YYATRAALGLPFQWSAPVAFITTFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGV RNIAFLGSGLLLVNYVAAVLAAIYMPQQVFRRSLMIPAHIFLALCLIFQAWVLEQANY TKGSNLRVLSLHMESVLC" mRNA complement(join(<30292987..30293010,30294917..30294979, 30295128..30295245,30295570..30295662,30296439..30296512, 30296969..30297194,30297633..30297779,30297878..30297999, 30298645..>30298762)) /locus_tag="TCM_025035" /product="Homogentisate prenyltransferase isoform 7" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s21200.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s21200.1" /note="transcript variant 7; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1223t2_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7051t3; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1263t3_C2" CDS complement(join(<30292987..30293010,30294917..30294979, 30295128..30295245,30295570..30295662,30296439..30296512, 30296969..30297194,30297633..30297779,30297878..30297999, 30298645..>30298761)) /locus_tag="TCM_025035" /note="encoded by transcript variant 7; alternatively spliced" /codon_start=1 /product="Homogentisate prenyltransferase isoform 7" /protein_id="EOY09635.1" /db_xref="Phytozome:POPTR_0006s21200.1" /db_xref="TAIR:AT3G11945.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1ACB3" /translation="KISYLSLRCAGNVVSVGLYSHTSCSKHVPTRQFKRNPIWACGQV GAAGSDPMLNKISTFKDACWRFLRPHTIRGTALGSVALVARALIENSNLIKWSLLLKA FLGIVALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIGFAMTGLL IVGSNFGPFITSLYSLGLFLGTIYSVPPFRMKRFPVAAFLIIAMVRGFLLNFGVYYAT RAALGLPFQWSAPVAFITTFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIA FLGSGLLLVNYVAAVLAAIYMPQVFRRSLMIPAHIFLALCLIFQEAISGFYR" mobile_element complement(30293957..30293973) /note="source:scaffold_1_CACTA_0016 6348 6451" /mobile_element_type="transposon:TIR/CACTA" mobile_element 30293974..30294065 /note="source:CACAO_M_E69780_F2_scaffold_9 1562 1652" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(30295083..30295245,30295570..30295662, 30296439..30296512,30296969..30297194,30297633..30297779, 30297878..30297999,30298645..>30298761)) /locus_tag="TCM_025035" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Homogentisate prenyltransferase isoform 5" /protein_id="EOY09633.1" /db_xref="Phytozome:POPTR_0006s21200.1" /db_xref="TAIR:AT3G11945.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1ACB3" /translation="KISYLSLRCAGNVVSVGLYSHTSCSKHVPTRQFKRNPIWACGQV GAAGSDPMLNKISTFKDACWRFLRPHTIRGTALGSVALVARALIENSNLIKWSLLLKA FLGIVALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWFLVIGFAMTGLL IVGSNFGPFITSLYSLGLFLGTIYSVPPFRMKRFPVAAFLIIAMVRGFLLNFGVYYAT RAALGLPFQWSAPVAFITTFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIA FLGSGLLLVNYVAAVLAAIYMPQVNKLYYLSLSSHSL" gene 30300207..30301063 /locus_tag="TCM_025036" /note="dbxref CacaoGD:Thecc1EG025036" mRNA join(30300207..30300288,30300795..30301063) /locus_tag="TCM_025036" /product="Nucleic acid-binding, OB-fold-like protein" /inference="alignment:exonerate- protein:2:ricco:27553.m000326" /inference="similar to AA sequence:ricco:29729.m002286" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14328t1" CDS 30300796..30300993 /locus_tag="TCM_025036" /note="dbxref ricco:29729.m002286" /codon_start=1 /product="Nucleic acid-binding, OB-fold-like protein" /protein_id="EOY09636.1" /db_xref="TAIR:AT5G03850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HLE9" /translation="MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKG PVREGDILTLLESEREARRLR" mobile_element complement(30302620..30303185) /note="source:CACAO_Helitron_E81_scaffold_3 2558 3108" /mobile_element_type="transposon:Helitron" mobile_element 30305680..30305921 /note="source:scaffold_2_CACTA_0243 6553 6792" /mobile_element_type="transposon:TIR/CACTA" mobile_element 30306497..30306713 /note="source:CACAO_on_E203_scaffold_7 5647 5870" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(30306927..30307036) /note="source:CACAO_M_S_E102025_F12_scaffold_9 4793 4981" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(30307034..30307144) /note="source:CACAO_M_S_E34046_F60_scaffold_4 2650 2760" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30307492..30307720 /note="source:scaffold_9_CACTA_0943 5626 5858" /mobile_element_type="transposon:TIR/CACTA" mobile_element 30307587..30307928 /note="source:CACAO_M_E4753_F17_scaffold_2 7439 7769" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 30308790..30310973 /locus_tag="TCM_025037" /note="dbxref CacaoGD:Thecc1EG025037" mRNA join(30308790..30308858,30308963..30309066, 30309824..30310095,30310233..30310436,30310559..30310973) /locus_tag="TCM_025037" /product="Ribosomal protein 5A" /inference="alignment:exonerate- protein:2:ricco:27553.m000328" /inference="similar to AA sequence:ricco:27553.m000328" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14341t1" CDS join(30308965..30309066,30309824..30310095, 30310233..30310436,30310559..30310613) /locus_tag="TCM_025037" /note="dbxref ricco:27553.m000328" /codon_start=1 /product="Ribosomal protein 5A" /protein_id="EOY09637.1" /db_xref="TAIR:AT3G11940.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2UVI0" /translation="MATAVAATGTAQPEGTQPHFEVKLFNRWSFEEVQVTDISLSDYI GVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHA MEIIHLLTDQNPIQVIVDAIINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLL TTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR" gene 30311057..30314186 /locus_tag="TCM_025038" /note="dbxref CacaoGD:Thecc1EG025038" mRNA join(30311057..30311493,30312166..30312866, 30312982..30314186) /locus_tag="TCM_025038" /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06330.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s06330.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1480t1_C2" mRNA join(30311163..30311493,30312166..30313559, 30313612..30313810) /locus_tag="TCM_025038" /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06330.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s06330.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1480t1_C2; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1480t1_C2" CDS join(30311188..30311493,30312166..30312866, 30312982..30313465) /locus_tag="TCM_025038" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 1" /protein_id="EOY09638.1" /db_xref="Phytozome:POPTR_0016s06330.1" /db_xref="TAIR:AT2G20710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIE6" /translation="MKLGDWSRVFNNLKTHFDFKNVLGVFPYSTSTTTTTGRSKMAMM GGSRKGLFRKISPIGDLSVSIVPVLDQRVEEGNSVEKHLLQFYINRLRSYRRYAHALE MSLWMTDKRYFPMSYRDVAIRLDLIAKVHGIEHAENYFNSVPKQLKGLAVYSALLYCY AREKSVEKAEALMQRMRDLGLDRSAFVFNVLLSLYYKADNYEKLDSLMQEMEEKGIAR DIYTYCICLKVNAAQSNVDGIEDILRTVESDSNLASDWFFYTTAGDAYIKVGHLDKAF AMLKKSEELIEGRGIVYDNLLTRYTTLGKKEEVLRIWELYKTYVKVYNKGYIAIICSL LKKGLLEKFETFVNRILLKGGKPNAKTWYYCATALLWHNEMEKAVEAMKEAILIIEPC WKPRLKPREESVAACLKYLKGKGDMDEAKIFIKLLGDRDIISPEVQVKLLSYIKDGNA DSKLDGLIMLDGGALHGSGEIHQFSEEDNDDIDCKPSKGSTLDVKL" CDS join(30311188..30311493,30312166..30312942) /locus_tag="TCM_025038" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 2" /protein_id="EOY09639.1" /db_xref="Phytozome:POPTR_0016s06330.1" /db_xref="TAIR:AT2G20710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIE6" /translation="MKLGDWSRVFNNLKTHFDFKNVLGVFPYSTSTTTTTGRSKMAMM GGSRKGLFRKISPIGDLSVSIVPVLDQRVEEGNSVEKHLLQFYINRLRSYRRYAHALE MSLWMTDKRYFPMSYRDVAIRLDLIAKVHGIEHAENYFNSVPKQLKGLAVYSALLYCY AREKSVEKAEALMQRMRDLGLDRSAFVFNVLLSLYYKADNYEKLDSLMQEMEEKGIAR DIYTYCICLKVNAAQSNVDGIEDILRTVESDSNLASDWFFYTTAGDAYIKVGHLDKAF AMLKKSEELIEGRGIVYDNLLTRYTTLGKKEEVLRIWELYKTYVKVYNKGYIAIICSL LKFDDIESVEKIFDEWESQTPHTFKL" gene 30314267..30317823 /locus_tag="TCM_025039" /note="dbxref CacaoGD:Thecc1EG025039" mRNA join(30314267..30314722,30315763..30315921, 30316647..30316728,30316910..30317823) /locus_tag="TCM_025039" /product="Nucleic acid binding,methyltransferases" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06360.1" /inference="similar to AA sequence:Phytozome:Glyma09g15650.3" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g06665t00001" CDS join(30314387..30314722,30315763..30315921, 30316647..30316728,30316910..30317061) /locus_tag="TCM_025039" /codon_start=1 /product="Nucleic acid binding,methyltransferases" /protein_id="EOY09640.1" /db_xref="Phytozome:Glyma09g15650.3" /db_xref="TAIR:AT3G58470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q75LK9" /translation="MEEELRTPKTEVFDDAADDDPPALSSHALAALQEFLKEQSQSLA DHETVETEGGGTGSESEVALVTEDWRLSQFWYDPETARTVAQEVLSLCSDSNYKVACI ACPTLYAYLKNMDPNISVQLLEYDKRFEQYGSDFTFYDYNQPEDLPLELKHTYQVVVA DPPYLSKECLEKVTQTISFLVQPQKSYLLLLTGEVQRDRAAELLGLYPCNFRPQHSSK LGNEFRLFTNYDPGERLGGWGQEN" gene 30317987..30324624 /locus_tag="TCM_025040" /note="dbxref CacaoGD:Thecc1EG025040" mRNA join(30317987..30318364,30318982..30319147, 30319824..30320127,30320497..30320529,30320622..30320713, 30320825..30320898,30321905..30321999,30322079..30322148, 30322552..30322724,30323491..30323548,30323649..30323714, 30324089..30324163,30324247..30324624) /locus_tag="TCM_025040" /product="RHOMBOID-like protein 15" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g36460.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s21220.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaL_g12326t00001" CDS join(30318341..30318364,30318982..30319147, 30319824..30320127,30320497..30320529,30320622..30320713, 30320825..30320898,30321905..30321999,30322079..30322148, 30322552..30322724,30323491..30323548,30323649..30323714, 30324089..30324163,30324247..30324252) /locus_tag="TCM_025040" /codon_start=1 /product="RHOMBOID-like protein 15" /protein_id="EOY09641.1" /db_xref="Phytozome:POPTR_0006s21220.1" /db_xref="TAIR:AT3G58460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9X7" /translation="MRPNIVSEAGLQTRVGQWWDNIPFLTSAVVIVCGVIYLVCLLVG YDSFYEICFLPEALVSHFQVYRIYTSIIFHGSLLHVLFNMLALVPLGSELERIMGSIR LLYMIILLATSNAIFHLIIALVVAHNPFLTDKYLMNECAIGFSGILFSMIVIETSLSG VQSRSVFGLFNVPAKWYAFILLVVFQLLMSNVSLLGHLCGILSGFAYTYGLFNFLIPG PSFYSAIESSSWLASCVRRPKFILCSGGNTSAYIPTFSGQTSPFSGLFSGNIWRNLSS WMPQRETAAQSTQDDVRFPGRGRTLGSGQNTAVNSDSNLQARLLDNSSPNNPSDIAAA GAGQRLSNERRSPVNNVVAASAGGPPLAQMQQGSISYEEQIQKLVSMGFERTQVEVAI AAADGDLNVAVEILMSQQG" gene complement(30325098..30329346) /locus_tag="TCM_025041" /note="dbxref CacaoGD:Thecc1EG025041" mRNA complement(join(30325098..30325761,30325842..30325949, 30326034..30326150,30326570..30326704,30327359..30327520, 30327659..30327766,30328032..30328289,30328476..30328601, 30328890..30329346)) /locus_tag="TCM_025041" /product="Zinc knuckle (CCHC-type) family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Sb05g022420.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc144t2" CDS complement(join(30325540..30325761,30325842..30325949, 30326034..30326150,30326570..30326704,30327359..30327520, 30327659..30327766,30328032..30328289,30328476..30328601, 30328890..30329123)) /locus_tag="TCM_025041" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Zinc knuckle (CCHC-type) family protein isoform 1" /protein_id="EOY09642.1" /db_xref="TAIR:AT3G43590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MYP8" /translation="MERPIPTRNEAEAAAVVKRRESGHWRSKVEEHGMISDLSGFDNL RAMIEGEATVQRRKRRRKRKRKRKKNKQAQHPLLVDAGKPAIDTEQAGRDEAVRTVEV SKMDLIEIPATDVPQKPAVDTAVKESKMIATVQAVKSRTGGNGDEAGSEDVFGLFSSS PEDGNLISNISSKKSTGKMLSVEATINKDSKTVWRNELKTVVAEETVDVGKREIHAEN AKCVETVKSPETEPAQNTVLRRLLRKPRYFDSPNGFWARSFSCGEDHPAAAANCTVQK RLKPCFLCGSLQHNGKHCVQGRDHQANCQEKQDENNLTYIICLRCGDSGHDMFSCRSD YSPDDLKRIQCYVCNGFGHLSCVNVLDTSPAEVSCYNCGQTGHLGSECTKFPKVARGS NAPALCHRCREEGHFARTCTLSRKMLQNTHANKETVHFCTLNNEKELFSTYHLQRTRR VQTEMRRSLGSSSAPPSLCEPQNDAKDEIQERLIINVDQ" mRNA complement(join(<30325626..30325653,30325842..30325949, 30326034..30326150,30326570..30326704,30327359..30327520, 30327659..30327766,30328032..30328289,30328476..30328601, 30328890..30329225)) /locus_tag="TCM_025041" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Sb05g022420.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog weak, intron is strong, protein is partial3; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc144t1; weak similarity to Zinc knuckle (CCHC-type) family protein; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc144t2; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc97t3" CDS complement(join(<30325627..30325653,30325842..30325949, 30326034..30326150,30326570..30326704,30327359..30327520, 30327659..30327766,30328032..30328289,30328476..30328601, 30328890..30329123)) /locus_tag="TCM_025041" /note="encoded by transcript variant 2; alternatively spliced; weak similarity to Zinc knuckle (CCHC-type) family protein" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY09643.1" /db_xref="TAIR:AT3G43590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MYP8" /translation="MERPIPTRNEAEAAAVVKRRESGHWRSKVEEHGMISDLSGFDNL RAMIEGEATVQRRKRRRKRKRKRKKNKQAQHPLLVDAGKPAIDTEQAGRDEAVRTVEV SKMDLIEIPATDVPQKPAVDTAVKESKMIATVQAVKSRTGGNGDEAGSEDVFGLFSSS PEDGNLISNISSKKSTGKMLSVEATINKDSKTVWRNELKTVVAEETVDVGKREIHAEN AKCVETVKSPETEPAQNTVLRRLLRKPRYFDSPNGFWARSFSCGEDHPAAAANCTVQK RLKPCFLCGSLQHNGKHCVQGRDHQANCQEKQDENNLTYIICLRCGDSGHDMFSCRSD YSPDDLKRIQCYVCNGFGHLSCVNVLDTSPAEVSCYNCGQTGHLGSECTKFPKVARGS NAPALCHRCREEGHFARTCTLSRKTEMRRSLGS" gene complement(30329884..30331122) /locus_tag="TCM_025042" /note="dbxref CacaoGD:Thecc1EG025042" mRNA complement(join(30329884..30330090,30330244..30330362, 30330480..30330583,30330826..30331122)) /locus_tag="TCM_025042" /product="Adenine nucleotide alpha hydrolases-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT3G11930.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025043t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s06400.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00491t00001" mRNA complement(join(30329920..30330090,30330244..30330362, 30330480..30330583,30330820..30331018)) /locus_tag="TCM_025042" /product="Adenine nucleotide alpha hydrolases-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT3G11930.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025043t1" /inference="similar to AA sequence:frave:gene18021" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc6299t4; inference alignment:Newbler:10:TSA:cgbaB_g00491t00001" CDS complement(join(30329994..30330090,30330244..30330362, 30330480..30330583,30330826..30331003)) /locus_tag="TCM_025042" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG025043t1" /codon_start=1 /product="Adenine nucleotide alpha hydrolases-like superfamily protein isoform 1" /protein_id="EOY09644.1" /db_xref="Phytozome:POPTR_0016s06400.1" /db_xref="TAIR:AT3G11930.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIF2" /translation="MRAMVGIDESDESFYALQWFLDNLFPDLSAALSAGLLTLVHVQQ PFQPYGFPAARPGVAAFYPSTVVADSVRKSQEQTSAALLSRALQMCKDKLIKAESLIL EGDPKDMLCEISEQMNVDLLIVGSRGLGKIKRAFLGSVSDYCAHHAKCPTLIVKPPKE ASNNK" CDS complement(join(30329994..30330090,30330244..30330362, 30330480..30330583,30330820..30331003)) /locus_tag="TCM_025042" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene18021; paralog of Thecc1EG025043t1" /codon_start=1 /product="Adenine nucleotide alpha hydrolases-like superfamily protein isoform 2" /protein_id="EOY09645.1" /db_xref="TAIR:AT3G11930.4" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIF2" /translation="MRAMVGIDESDESFYALQWFLDNLFPDLSAALSAGLLTLVHVQQ PFQPYGFPAARPGVAGKTFYPSTVVADSVRKSQEQTSAALLSRALQMCKDKLIKAESL ILEGDPKDMLCEISEQMNVDLLIVGSRGLGKIKRAFLGSVSDYCAHHAKCPTLIVKPP KEASNNK" gene complement(30332417..30333868) /locus_tag="TCM_025043" /note="dbxref CacaoGD:Thecc1EG025043" mRNA complement(join(30332417..30332736,30332929..30333047, 30333271..30333368,30333578..30333868)) /locus_tag="TCM_025043" /product="Adenine nucleotide alpha hydrolases-like superfamily protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025042t2" /inference="similar to AA sequence:Phytozome:POPTR_0016s06400.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00849t00001" CDS complement(join(30332646..30332736,30332929..30333047, 30333271..30333368,30333578..30333785)) /locus_tag="TCM_025043" /note="paralog of Thecc1EG025042t2" /codon_start=1 /product="Adenine nucleotide alpha hydrolases-like superfamily protein, putative" /protein_id="EOY09646.1" /db_xref="Phytozome:POPTR_0016s06400.1" /db_xref="TAIR:AT3G11930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIF2" /translation="MRVMVGIDGSDASFYALQWTLDNLFNGLISPAPAVVGGEATLLT LVHVHQPIKHYGFAPSAFPAGPGVLAYASTTLVDSVRKSQEQISAGILSRALKMCKDK IKAETLILEGDPTDMICDISEQMNVDLLVVGSRGLGKIKRALLGSVSDYCAHYAKCPT LIVKPLKEASK" gene complement(30335284..30337938) /locus_tag="TCM_025044" /note="dbxref CacaoGD:Thecc1EG025044" mRNA complement(join(30335284..30335579,30335837..30335955, 30336257..30336360,30337640..30337938)) /locus_tag="TCM_025044" /product="Adenine nucleotide alpha hydrolases-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06400.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025042t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s06400.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00510t00001" CDS complement(join(30335489..30335579,30335837..30335955, 30336257..30336360,30337640..30337844)) /locus_tag="TCM_025044" /note="paralog of Thecc1EG025042t1" /codon_start=1 /product="Adenine nucleotide alpha hydrolases-like superfamily protein, putative" /protein_id="EOY09647.1" /db_xref="Phytozome:POPTR_0016s06400.1" /db_xref="TAIR:AT3G11930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IIF2" /translation="MRVMVGIDESDESFHALRWTLDKLFDGMSTRTAPPEEANQEEAA NLLTLLHVQKAFHNYGIPVGAGASAFYVPYSIEESVRKSQNQISKELLFHASQMCKDK SIKVKSLILEGDPKEKICQVIEQMQVDLLVVGSRKLGKIKRALLGSVSDYCAHNANCP VLIVKPPQEASK" mobile_element 30338950..30339058 /note="source:scaffold_3_CACTA_0377 2101 2217" /mobile_element_type="transposon:TIR/CACTA" gene 30339287..30351720 /locus_tag="TCM_025045" /note="dbxref CacaoGD:Thecc1EG025045" mRNA join(30339287..30339537,30339806..30339869, 30340068..30340215,30340325..30340482,30341420..30341685, 30341784..30342002,30342079..30342187,30342281..30342396, 30342695..30342793,30343470..30343579,30344002..30344076, 30344585..30344663,30344761..30344907,30345018..30345098, 30345187..30345306,30345926..30346048,30346483..30346560, 30346656..30346744,30346824..30346932,30347022..30347090, 30347159..30347269,30347828..30347883,30347979..30348156, 30348247..30348348,30348450..30348521,30348947..30349012, 30349174..30349239,30349920..30350006,30350134..30350250, 30350447..30350521,30350637..30350720,30350863..30351720) /locus_tag="TCM_025045" /product="Ubiquitin-specific protease 12" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s21260.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041172t1" /inference="similar to AA sequence:ricco:29333.m001109" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1178t7" CDS join(30339508..30339537,30339806..30339869, 30340068..30340215,30340325..30340482,30341420..30341685, 30341784..30342002,30342079..30342187,30342281..30342396, 30342695..30342793,30343470..30343579,30344002..30344076, 30344585..30344663,30344761..30344907,30345018..30345098, 30345187..30345306,30345926..30346048,30346483..30346560, 30346656..30346744,30346824..30346932,30347022..30347090, 30347159..30347269,30347828..30347883,30347979..30348156, 30348247..30348348,30348450..30348521,30348947..30349012, 30349174..30349239,30349920..30350006,30350134..30350250, 30350447..30350521,30350637..30350720,30350863..30350904) /locus_tag="TCM_025045" /note="dbxref ricco:29333.m001109; paralog of Thecc1EG041172t1" /codon_start=1 /product="Ubiquitin-specific protease 12" /protein_id="EOY09648.1" /db_xref="TAIR:AT5G06600.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9P5" /translation="MTMMTTPPLDQEDEEMLVPHSDIVEGPQPMEVAQVEPASTVENQ QVEDPPSMKFTWTIENFSRLNTKKHYSDIFVVGGYKWRILIFPKGNNVDHLSMYLDVA DSSTLPYGWSRYAQFSLAVVNQIHHKYSIRKDTQHQFNARESDWGFTSFMPLSDLYDP SRGYLVNDTVVVEAEVAVRKILDYWSYDSKKETGYVGLKNQGATCYMNSLLQTLYHIP YFRKAVYHMPTTENDMPIGSIPLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFMQ HDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQ LDVKGCRDVYASFDKYVEVERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRF EYDFMRDTMVKINDRYEFPLQLDLDRENGKYLSPEADRSVRNLYTLHSVLVHSGGVHG GHYYAFIRPTLSDQWYKFDDERVTKEDMKRALEEQYGGEEELPQTNPGFNNTPFKFTK YSNAYMLVYIRESDKDKIICNVDEKDIAEHLRIRLKKEQEEKEDKRRYKAEAHLYTII KVARDEDLAEQIGRDIYFDLVDHDKVRSFRIQKQIPFHVFKEEVAKEFGIPVQYQRFW IWAKRQNHTYRPNRPLTSQEEAQSVGQLREVSNKAHNAELKLFLEVEHGQDLRTIPPP DKTREDILLFFKLYDPEKGELRYVGRLLVKLSGKPIEYIAKLNQMAGFAPDEEIELYE EIKFEPCVMCEHLDKRCSFRLSQIEDGDIICFQKSPPTESEEACRYPDVPSFLEYVHN RQIVRFRSLERPKEDDFCLELSKIHTYDDVVERVARKIGLDDPSKIRLTSHNCYSQQP KPQPIKYRGVEHLSEMLVHYNQTSDILYYEVLDIPLPELQGLKNLKVAFHHATKDEVV IHNIRLPKQSTVGNVIDELKTKVELSHPNAELRLLEVFYHKIYKIFPPSEKIENINDQ YWTLRAEEIPEEEKNLGPHDRLIHVYHFTKETSQNQMQVQNFGEPFFLVIHEGETLAE VKVRIQKKLQVHDEEFTKWKFAFLSLGRPEYLQDSDIVFNRFQRRDVYGAWEQYLGLE HPDNTPKRAYVNQNRHTFEKPVKIYN" mobile_element 30351006..30351061 /note="source:scaffold_8_CACTA_0856 715 770" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(30351055..30351132) /note="source:CACAO_M_E26982_F230_scaffold_4 1150 1228" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30351070..30351135 /note="source:CACAO_M_E44848_F172_scaffold_6 1914 1982" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(30351865..30354575) /locus_tag="TCM_025046" /note="dbxref CacaoGD:Thecc1EG025046" mRNA complement(join(30351865..30352025,30352235..30352340, 30352859..30352971,30353096..30353169,30353235..30353340, 30353485..30353555,30353717..30353822,30353950..30354150, 30354263..30354575)) /locus_tag="TCM_025046" /product="UPF0184 protein AAEL002161, putative" /inference="alignment:exonerate- protein:2:ricco:29333.m001107" /inference="similar to AA sequence:Phytozome:GSVIVT01022502001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g01382t00001" CDS complement(join(30351931..30352025,30352235..30352340, 30352859..30352971,30353096..30353169,30353235..30353340, 30353485..30353555,30353717..30353822,30353950..30354150, 30354263..30354410)) /locus_tag="TCM_025046" /codon_start=1 /product="UPF0184 protein AAEL002161, putative" /protein_id="EOY09649.1" /db_xref="Phytozome:GSVIVT01022502001" /db_xref="TAIR:AT5G06590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GYE1" /translation="MLKVETRLTISKMEDLITDFSKTLGSFCNHLQSSCDALKQSIDR RPIPLDSASSTFVQCLNRRVSNSTADLNLLDSMSFGTVSFEELLGHCYQIFNKNQTDL LDLEDRLKPLGYFPQLEIDDDEEEEEVLDSKERSFAVTNSVMKSLEEDPLLDESLSLK NFGLSDVCLATLASQELAFATTIFASIDAIFLSTANHKVDDSDLSFGENMKYYGDKAS NTKGTYKPATDTFEVTKGEVENELHQVDAPRPAIQVSKDGYEGLPSYMTSLASWEDLL AAVEKINSSLSKKEKTKGYNYFHQDEIESLDLGPKGRAYLLLLVRMNHLVVETIDGLI SYRVL" gene complement(30354636..30361702) /locus_tag="TCM_025047" /note="dbxref CacaoGD:Thecc1EG025047" mRNA complement(join(30354636..30355250,30355588..30355722, 30355833..30355946,30356664..30356752,30356871..30356954, 30357079..30357166,30357894..30357962,30358058..30358210, 30358783..30359025,30360292..30361702)) /locus_tag="TCM_025047" /product="Transferrin receptor protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29333.m001105" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037767t1" /inference="similar to AA sequence:frave:gene18030" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7131t2" CDS complement(join(30355068..30355250,30355588..30355722, 30355833..30355946,30356664..30356752,30356871..30356954, 30357079..30357166,30357894..30357962,30358058..30358210, 30358783..30359025,30360292..30361242)) /locus_tag="TCM_025047" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene18030; paralog of Thecc1EG037767t1" /codon_start=1 /product="Transferrin receptor protein, putative isoform 1" /protein_id="EOY09650.1" /db_xref="TAIR:AT3G54720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SDP7" /translation="MSQPLTKPNNSLTSKPSPLCAFLFLIILCILGFYAVHYPPRNPQ NDLLFHQIFLSSANNNTISSYLRSLTSHPHLAGTKPSLETTHYVKTHFKNLGLETHTV PFKTLLSYPLRASVSLHFDNGTVLNLPLNEIGISSYAPSGLVQPYHAYSPSGTTQGDV VFVNKGTEDDYRALEVMGVNVSGCIVIVKKGGSLSRGAAVEIAEKKGALGVLMYAEGD VSRGSFRFGVERGTVMKGVGDPLTPGWAGVEDGERLELEDNKVLDRFPGIPSLPLTFE SAQVILESLGGPEAPQKWRDSSRSKLSRVGPGQVMVNFIYQGEKKLATIHNVFAVIRG SVEPDRYVLLGNHRDAWTYGAVDPNSGTAALLDIARRYALLMRKGWNPRRTIIFCSWD AEEFGMIGSTEWVEQNLVNLGAKAVAYLNVDCAVQGPGFFAGATPQLDDLIFEVTKKV KDPDSDVATIYDKWTTMNRISNIDRLSGVDSDFAPFLHHAGVSSVDIYYGRDFPVYHT AFDSFNWMINFADPFFWRHVAVAGVWGLLGLHLADDPVLPLNYLSYAKQLQEHKDVLS SFVDGSMSLTPLDASIQELASAAKRANDEAKRLMEQGFTDDLLVLKVRALNDRLMLAE RGFLDTDGIKGREWFKHLIYGPRRNHGSKLEFFPGISDAIAESTKLSQRDGQAAIRHE IWRVARAIRRAAVALKGELT" mRNA complement(join(<30356663..30356752,30356871..30356954, 30357079..30357166,30357894..30357962,30358058..30358197, 30358779..30359025,30360292..30361490)) /locus_tag="TCM_025047" /product="Transferrin receptor protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:29333.m001105" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037767t1" /inference="similar to AA sequence:frave:gene18030" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1047t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7131t2" CDS complement(join(<30356664..30356752,30356871..30356954, 30357079..30357166,30357894..30357962,30358058..30358197, 30358779..30359025,30360292..30361242)) /locus_tag="TCM_025047" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene18030; paralog of Thecc1EG037767t1" /codon_start=1 /product="Transferrin receptor protein, putative isoform 2" /protein_id="EOY09651.1" /db_xref="TAIR:AT3G54720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SDP7" /translation="MSQPLTKPNNSLTSKPSPLCAFLFLIILCILGFYAVHYPPRNPQ NDLLFHQIFLSSANNNTISSYLRSLTSHPHLAGTKPSLETTHYVKTHFKNLGLETHTV PFKTLLSYPLRASVSLHFDNGTVLNLPLNEIGISSYAPSGLVQPYHAYSPSGTTQGDV VFVNKGTEDDYRALEVMGVNVSGCIVIVKKGGSLSRGAAVEIAEKKGALGVLMYAEGD VSRGSFRFGVERGTVMKGVGDPLTPGWAGVEDGERLELEDNKVLDRFPGIPSLPLTFE SAQVILESLGGPEAPQKWRDSSRSKLSRVGPGQVMVNFIYQGEKKLATIHNVFAVIRG SVEPDRYVLLGNHRDAWTYGAVDPNSGTAALLDIARRYALLMRKGWNPRRTIIFCSWD AEEFGMVEWVEQNLVNLGAKAVAYLNVDCAVQGPGFFAGATPQLDDLIFEVTKKVKDP DSDVATIYDKWTTMNRISNIDRLSGVDSDFAPFLHHAGVSSVDIYYGRDFPVYHTAFD SFNWMINFADPFFWRHVAVAGVWGLLGLHLADDPVLPLNYLSYAKQLQ" mRNA complement(join(<30356871..30356897,30357079..30357166, 30357894..30357962,30358058..30358210,30358783..30359025, 30360292..30361490)) /locus_tag="TCM_025047" /product="Transferrin receptor protein, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:29333.m001105" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037767t2" /inference="similar to AA sequence:frave:gene18030" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1055t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7131t2" CDS complement(join(<30356872..30356897,30357079..30357166, 30357894..30357962,30358058..30358210,30358783..30359025, 30360292..30361242)) /locus_tag="TCM_025047" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene18030; paralog of Thecc1EG037767t2" /codon_start=1 /product="Transferrin receptor protein, putative isoform 3" /protein_id="EOY09652.1" /db_xref="TAIR:AT3G54720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SDP7" /translation="MSQPLTKPNNSLTSKPSPLCAFLFLIILCILGFYAVHYPPRNPQ NDLLFHQIFLSSANNNTISSYLRSLTSHPHLAGTKPSLETTHYVKTHFKNLGLETHTV PFKTLLSYPLRASVSLHFDNGTVLNLPLNEIGISSYAPSGLVQPYHAYSPSGTTQGDV VFVNKGTEDDYRALEVMGVNVSGCIVIVKKGGSLSRGAAVEIAEKKGALGVLMYAEGD VSRGSFRFGVERGTVMKGVGDPLTPGWAGVEDGERLELEDNKVLDRFPGIPSLPLTFE SAQVILESLGGPEAPQKWRDSSRSKLSRVGPGQVMVNFIYQGEKKLATIHNVFAVIRG SVEPDRYVLLGNHRDAWTYGAVDPNSGTAALLDIARRYALLMRKGWNPRRTIIFCSWD AEEFGMIGSTEWVEQNLVNLGAKAVAYLNVDCAVQGPGFFAGATPQLDDLIFEVTKKV KDPDSDVATIYDKWTTMNRISNIDRLSGVDSDFAPFLHHAGVSSVDIYYGRDPFFWRH VA" gene complement(30362455..30363802) /locus_tag="TCM_025048" /note="dbxref CacaoGD:Thecc1EG025048" mRNA complement(30362455..30363802) /locus_tag="TCM_025048" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.19 coverage" CDS complement(30363305..30363640) /locus_tag="TCM_025048" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09653.1" /translation="MFMHIDQKLDSYMDHRNWTLKLCLQQHCVSKEVPLQKQSIFHDC IICSDISFSGEGHFGLHQSYCSPHSPKHGASTSRGKRLAFLAKITKVKVKVKGEGDID SHSFFTTNR" gene complement(30364380..30367472) /locus_tag="TCM_025049" /note="dbxref CacaoGD:Thecc1EG025049" mRNA complement(join(30364380..30365306,30366042..30366689, 30367167..30367472)) /locus_tag="TCM_025049" /product="Aromatic and neutral transporter 1" /inference="alignment:exonerate- protein:2:ricco:29333.m001103" /inference="similar to AA sequence:ricco:29333.m001103" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7101t1" CDS complement(join(30364899..30365306,30366042..30366689, 30367167..30367391)) /locus_tag="TCM_025049" /note="dbxref ricco:29333.m001103" /codon_start=1 /product="Aromatic and neutral transporter 1" /protein_id="EOY09654.1" /db_xref="TAIR:AT3G11900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O24406" /translation="MEEKNSDRIPLINPPPSTATDGTASKLQTIGNIIVSIVGTGVLG LPFAFRIAGWLAGSIGVILAGLATYYCMLLLVQCRDRLASEKELPGTTTYGDLGYRCL GRPGRYLTEFLIFISQCGGSVAYLVFIGQNLASIVKGHGLTIASYIFLLVPIEIALSW IGSLSAFAPFSIFADICNVLAMGFVVKEDIQQAIGGDFLFRDRKAITDNIGGLPFAGG MAVFCFEGFGMTLALEASMKERRTFPKVLAMAFTWITLVYVLFGIFGYMAYGDETKDI ITLNLPKNWTAIAVQIGLCLGLVFTFPIMVHPVNEILEGKLKKKLWLQKLHDNDAESS LTRLGKFGICISRAVLVIGLAVLASFVPGFGVFASLVGSTVCALISFVLPASFHLTLL GSSLSFWQKALDFCILLCGLLLAAYGTYNTIVGV" gene complement(30368222..30371333) /locus_tag="TCM_025050" /note="dbxref CacaoGD:Thecc1EG025050" mRNA complement(join(30368222..30369427,30371165..30371256)) /locus_tag="TCM_025050" /product="Sterile alpha motif domain-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01022504001" /inference="similar to AA sequence:ricco:29333.m001101" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7135t2; alternateUTRof:Thecc1EG025050t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14257t2" mRNA complement(join(30368337..30369427,30370325..30370358, 30371165..30371333)) /locus_tag="TCM_025050" /product="Sterile alpha motif domain-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01022504001" /inference="similar to AA sequence:ricco:29333.m001101" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14257t2" CDS complement(30368626..30369417) /locus_tag="TCM_025050" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29333.m001101" /codon_start=1 /product="Sterile alpha motif domain-containing protein, putative isoform 1" /protein_id="EOY09655.1" /db_xref="TAIR:AT3G11890.2" /db_xref="UniProtKB/TrEMBL:UniRef50_C6TBF8" /translation="MVKSKQRQLATKHANKKNAQGGNLDSSNPNIELDLLGEDGWVVV KKQRVTILIPPLPVATKSKITNQGPGQLEAMPRKEVEDQSRLSVQTCSKLPSGNGQEK STSSAHRKGIEITRSPAQHILTLARSPAQGVRLEPEISSQLVTLKSHKIYRVPEASKT IRRPRSMHCRNVPIAGSMLLNRRLRVSNLERKLQQAGGLSRWLTSIGLGQFVRIFQAK SVNKFQLVNLNMQKLKDMGADAVGPRRKLIHAIDCVCQPFCFEAI" CDS complement(30368626..30369417) /locus_tag="TCM_025050" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29333.m001101" /codon_start=1 /product="Sterile alpha motif domain-containing protein, putative isoform 1" /protein_id="EOY09656.1" /db_xref="TAIR:AT3G11890.2" /db_xref="UniProtKB/TrEMBL:UniRef50_C6TBF8" /translation="MVKSKQRQLATKHANKKNAQGGNLDSSNPNIELDLLGEDGWVVV KKQRVTILIPPLPVATKSKITNQGPGQLEAMPRKEVEDQSRLSVQTCSKLPSGNGQEK STSSAHRKGIEITRSPAQHILTLARSPAQGVRLEPEISSQLVTLKSHKIYRVPEASKT IRRPRSMHCRNVPIAGSMLLNRRLRVSNLERKLQQAGGLSRWLTSIGLGQFVRIFQAK SVNKFQLVNLNMQKLKDMGADAVGPRRKLIHAIDCVCQPFCFEAI" mobile_element complement(30372149..30372257) /note="source:scaffold_5_CACTA_0580 5414 5508" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(30373500..30374287) /note="source:CACAO_on_S_E46_scaffold_2 381 1152" /mobile_element_type="transposon:TIR/Mutator" gene 30375253..30376309 /locus_tag="TCM_025052" /note="dbxref CacaoGD:Thecc1EG025052" mRNA 30375253..30376309 /locus_tag="TCM_025052" /product="Sulfotransferase 17" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025055t1" /inference="similar to AA sequence:ricco:30138.m003927" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.28 coverage" CDS 30375492..30376253 /locus_tag="TCM_025052" /note="dbxref ricco:30138.m003927; paralog of Thecc1EG025055t1" /codon_start=1 /product="Sulfotransferase 17" /protein_id="EOY09657.1" /db_xref="TAIR:AT1G18590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I531" /translation="MSLFAIATRKLFDNSSSPLLTKNPHLCVPSFEGYGQKADIREPG VPLIATHTPYTCLPKSVLDCSPDHCKIVYICRDAFVSLFHYAAKRRPTENEPISLEVA FHLFCEGKSFFGPCWDHILEYWKASQERPDKVMFLKYEDMLNDSVLYVKKLAEFMGYP FSSDEEQVGAVQKIVDLCSFENLSNLEINKTGKRYADDSEATNKYFFRKGKIGDWQNY LTSCRNVRVQEPDHQTRVKTLKNEKSPPIFFTRYD" mobile_element 30376155..30377093 /note="source:INTACT641_F282_scaffold_1-int 4347 5287" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(30377034..30377637) /note="source:CACAO_M_S_E38315_F276_scaffold_4 8516 9111" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(30377097..30378864) /note="source:INTACT375F_F353_scaffold_3-int 796 2550" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30379309..30385846 /note="source:INTACT61_F128_scaffold_2-int 2716 8607" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(30385825..30387566) /note="source:INTACT375F_F353_scaffold_3-int 3857 5587" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(30387638..30390355) /note="source:INTACT375F_F353_scaffold_3-int 796 3466" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(30390728..30391224) /note="source:CACAO_Mutator_E1149_scaffold_5 4088 4562" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(30392442..30393738) /note="source:INTACT556_F252_scaffold_2-int 16076 17434" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30393815..30394361 /note="source:CACAO_M_E12044_F76_scaffold_2 5693 6219" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30394516..30394942 /note="source:INTACT458_F219_scaffold_7-int 17696 18131" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(30394943..30396471) /note="source:INTACT477_F225_scaffold_9-int 2779 4290" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(30396954..30397485) /note="source:CACAO_Again_on_E100_scaffold_4 131 664" /mobile_element_type="transposon:TIR/hAT" mobile_element 30397331..30397643 /note="source:CACAO_on_SS_E42_scaffold_2 24149 24480" /mobile_element_type="transposon:TIR/Mutator" mobile_element 30397518..30397671 /note="source:CACAO_Again_on_S_E248_scaffold_8 665 843" /mobile_element_type="transposon:TIR/hAT" gene complement(30397603..30399774) /locus_tag="TCM_025054" /note="dbxref CacaoGD:Thecc1EG025054" mRNA complement(join(30397603..30397916,30398503..30399084, 30399147..30399774)) /locus_tag="TCM_025054" /product="Flavonol 3-sulfotransferase, putative" /inference="alignment:exonerate- protein:2:ricco:30138.m003927.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020723t1" /inference="similar to AA sequence:ricco:30138.m003927" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" mobile_element complement(30398004..30398141) /note="source:scaffold_1_CACTA_0016 2353 2492" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(30398666..30399084,30399147..30399687)) /locus_tag="TCM_025054" /note="dbxref ricco:30138.m003927; paralog of Thecc1EG020723t1" /codon_start=1 /product="Flavonol 3-sulfotransferase, putative" /protein_id="EOY09658.1" /db_xref="TAIR:AT1G74100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SEF7" /translation="MALCGTSEISALKTCEVENGPPKAPAAYKEIISTLPSENGWKVF QQLCFYQCFWCFPLHLEGAMYARHHFKAQPTDVLLCSAPKTGTPWLKALSVAIVTRNS AADNANNLLLNKVPHECIMFLEKDFIKNPTDQERLLRLVATHLPYAALPKSILDAGCK IVYICRDPKDAFVSLWHFARGRSNFGPYWDHVLGYWKASQESPEKVLFMNYEDLLGDT INQVKRLAEFLGHPFSTEEEKQGAVEKVISLCSLENLSNLEINKTGKYGDAEKAIENT VYFRKGEVGDWKNYLTPEMGDQLDTIMEEKLSGSGFTFREPND" mobile_element 30400836..30400890 /note="source:scaffold_8_CACTA_0856 928 980" /mobile_element_type="transposon:TIR/CACTA" mobile_element 30400891..30400901 /note="source:MITE_Unknow_2_17 484 551" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(30400902..30400918) /note="source:CACAO_M_E58268_F98_scaffold_9 614 657" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 30402993..30408377 /locus_tag="TCM_025055" /note="dbxref CacaoGD:Thecc1EG025055" mRNA join(30402993..30404081,30404162..30404406, 30407065..30407141,30407342..30408377) /locus_tag="TCM_025055" /product="Sulfotransferase 17" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034455001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025052t1" /inference="similar to AA sequence:Phytozome:GSVIVT01034455001" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.42 coverage" CDS join(30403411..30404081,30404162..30404406, 30407065..30407141,30407342..30407443) /locus_tag="TCM_025055" /note="paralog of Thecc1EG025052t1" /codon_start=1 /product="Sulfotransferase 17" /protein_id="EOY09659.1" /db_xref="Phytozome:GSVIVT01034455001" /db_xref="TAIR:AT1G18590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I531" /translation="MEPSGAADSLDKEEVSPEKMERVREFMSTLPAENGWRAFQPLCL YQGFWSFPYFLEGIILAQQHFKPKPGDIFVCSAPKSGTTWLKAVTFAIVTRKHFDNSS SPLLTKGPHHCVPTFVGFGQKADIREPGVPLIATHAPYPSLPKSVLDCSSDHCKIVCI CREPKDAFVSMFHFAAKRRFKEIEPISLEEAFHLFCEGKSVFGPCWDHILEFWKASQE RPDKAISDEEQVGAVQKIVDLCSFENLSNLEINKTGKRYAGDSEATNKSFFRKGKVGD WQNYLTMAQRLDKIMKQKLSGSGLTFELQCRITGDNILQTRLLSTPLGLFPPFKSCAQ KWYHLAQGSDLRHCQKVNIKEGKRQAALKS" gene complement(30406868..30408332) /locus_tag="TCM_025056" /note="dbxref CacaoGD:Thecc1EG025056" mRNA complement(30406868..30408332) /locus_tag="TCM_025056" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028765t1" /inference="similar to AA sequence:frave:gene22832" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.61 coverage" CDS complement(30407806..30408129) /locus_tag="TCM_025056" /note="dbxref frave:gene22832; paralog of Thecc1EG028765t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09660.1" /translation="MASTCCELIWLKYLLFDFGISHDEPIVLYLDSQAAIHMSKNPVF HERTKHIKMDCHFVREKVLAGVIKPVHISTNLQLADSFTKALQERQFHNLLSKMKVLN NHIAF" gene complement(30408379..30410692) /locus_tag="TCM_025057" /note="dbxref CacaoGD:Thecc1EG025057" mRNA complement(join(30408379..30409807,30409892..30410692)) /locus_tag="TCM_025057" /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400050559.11" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032586t1" /inference="similar to AA sequence:frave:gene20290" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.39 coverage" CDS complement(join(30408998..30409807,30409892..30410560)) /locus_tag="TCM_025057" /note="dbxref frave:gene20290; paralog of Thecc1EG032586t1" /codon_start=1 /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /protein_id="EOY09661.1" /db_xref="TAIR:AT4G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BM32" /translation="MAKQKKLPFLVHVQSTTCAFQLVHVDIWGPYETPTLSGQRYFLI VVDDFTRFTWVFLMSNKSDVLTIILSFNNHVQKQFELQIKCIRSNNGLEFRLSDFFAK TGIIHHLSSVDTPQQNGIVERKHRHILTVARALMHQSSVPICLWGDAILTAVHIINRV PTKILQNKSPFELIFHKAPTYEHLRVFGCLCFVSTLPQYRKKLDKIASKFIFLEYPNY IKGYKHDEQENTFSQTPNLHAKYPNVFYSNSENLQYQDQVHAENHSPSPESGPQTLIT IVSNELAHDSPMIVSMPTAIDSVSDADDNDFDDRNTNLPIRRSTRFKQIPKYLEAYDV DLSSHSNIVTAHPISKHLSASKLSLEQKTFTISLSKIHEPNTYHQAANHFHWRDAMSV ELKALQDNGTWSIVPWPANSHVIGCKWIYKVKLNEHGEVELYKARLVAKGYSQIIGFD YQDTFSLVAKQTTVRVFFALAVVHNWSLSQLDVNNAFLNGDL" gene complement(30410533..30412612) /locus_tag="TCM_025058" /note="dbxref CacaoGD:Thecc1EG025058" mRNA complement(join(30410533..30410839,30411202..30412503)) /locus_tag="TCM_025058" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400050559.11" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020952t1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc2584t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7120t1" mRNA complement(join(30410741..30410839,30411265..30412612)) /locus_tag="TCM_025058" /product="Uncharacterized protein isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020952t1" /note="transcript variant 1; alternatively spliced; quality class is strong-expresste, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7120t1" CDS complement(join(30410805..30410839,30411265..30412021)) /locus_tag="TCM_025058" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG020952t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY09662.1" /translation="MDSAAEIWNTLKQNFAQPDDTRVCNLQYTLGNVSQGARTVDVYF IELKGIWEELRNYRPLPHCECGSYNPGCFKKYTDQFQKDMVFRFLNGLNKSFSAIRSQ ILLMDPIPGLDKVYSLILREESQRNILVQPQPLLESFAMFTAADNKKKARKDIICNHC GKKGHTKDKCYKIISFLDDFKFTKGGRSNPRKGKNLVNNVFAVSDASTDSESQVETKE EQASAGFVCQLSMIKQQVNKLMQFLSENGISSNEGHPFMDCDWGH" CDS complement(30411239..30412021) /locus_tag="TCM_025058" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG020952t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY09663.1" /translation="MDSAAEIWNTLKQNFAQPDDTRVCNLQYTLGNVSQGARTVDVYF IELKGIWEELRNYRPLPHCECGSYNPGCFKKYTDQFQKDMVFRFLNGLNKSFSAIRSQ ILLMDPIPGLDKVYSLILREESQRNILVQPQPLLESFAMFTAADNKKKARKDIICNHC GKKGHTKDKCYKIISFLDDFKFTKGGRSNPRKGKNLVNNVFAVSDASTDSESQVETKE EQASAGFVCQLSMIKQQVNKLMQFLSENGISSNEGKGISSNT" gene 30412187..30413884 /locus_tag="TCM_025060" /note="dbxref CacaoGD:Thecc1EG025060" mRNA join(30412187..30412306,30412956..30413884) /locus_tag="TCM_025060" /product="Sulfotransferase 17, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s04800.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020723t1" /inference="similar to AA sequence:Phytozome:GSVIVT01034455001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7122t1" CDS join(30412296..30412306,30412956..30413670) /locus_tag="TCM_025060" /note="paralog of Thecc1EG020723t1" /codon_start=1 /product="Sulfotransferase 17, putative" /protein_id="EOY09664.1" /db_xref="Phytozome:GSVIVT01034455001" /db_xref="TAIR:AT1G18590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N3C1" /translation="MGDRNRYDTSTSPLLSKISHDCIPTLAKLTKEPDSREPGIPLVG THTPYTALPKSILDSDCKIVYICREPKDAFVALYHFLAKRAPKKNEFVSLEEAFDLFC QGKSFYGPYLDHVLGFWKASQARPGKVLFPKYEDMMKDTAPYVKRLAEFMGYPFSLEE EEAGAVQRIVDLCGFENMSSLEVNKSGLRKPHEVKVENSFYFRKGRIGDWKEYLTPEM AERLDKMMEQKFAGTGLTFLVSC" mobile_element complement(30416507..30417606) /note="source:INTACT5_F105_scaffold_4-int 319 1416" /mobile_element_type="retrotransposon:LTR/Unclassified" gene complement(30421104..30425728) /locus_tag="TCM_025062" /note="dbxref CacaoGD:Thecc1EG025062" mRNA complement(join(30421104..30421774,30425067..30425728)) /locus_tag="TCM_025062" /product="Alpha/beta-Hydrolases superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g11060.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041202t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s21320.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7133t2" CDS complement(join(30421468..30421774,30425067..30425707)) /locus_tag="TCM_025062" /note="paralog of Thecc1EG041202t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein, putative" /protein_id="EOY09665.1" /db_xref="Phytozome:POPTR_0006s21320.1" /db_xref="TAIR:AT5G06570.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FG13" /translation="MGVLQVLSDGTVFRSKNIQFNMPVIDEKSVHFKDAMFDKSHNLY LRLYKPTSASVPGNNNKLPIIIFIHGGGFCLGSRMWPTCHSSCLRLSSGLNALVVAPD YRLAPEHRLPAAMDDAASAMKWLQGQALSGNTNDAWFGSGEVDFDQVFVVGDSSGGNI AHHLAVRLGAGSTELAPVRVRGYVLLAPFFGGVVRTKSEDGPSEALLNLEILDRFWRL SMPIGETRDHPLANPFGPWSPRLETVTLDPILVIVGGNELLKDRAEDYARRLKDMGKK IEYVEFEGKEHGYFNCDPHSDATNQTLQVISRFMSDNSS" mobile_element complement(30424283..30424370) /note="source:CACAO_PIF_E144_scaffold_10 5991 6077" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(30428136..30442070) /locus_tag="TCM_025063" /note="dbxref CacaoGD:Thecc1EG025063" mRNA complement(join(30428136..30428613,30429020..30429063, 30429295..30429425,30430073..30430152,30430280..30430342, 30431855..30431964,30432376..30432484,30432555..30432629, 30434760..30434856,30435403..30435464,30435537..30435573, 30437066..30437126,30437280..30437394,30437811..30437903, 30438239..30438287,30439526..30439626,30439730..30439832, 30439974..30440842,30441033..30441091,30442044..30442070)) /locus_tag="TCM_025063" /product="FAD-linked oxidases family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06480.1" /inference="similar to AA sequence:ricco:29333.m001099" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc543t16; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc543t16" mRNA complement(join(30428136..30428613,30429020..30429063, 30429295..30429425,30430073..30430152,30430280..30430342, 30431855..30431964,30432376..30432484,30432555..30432629, 30434760..30434856,30435403..30435464,30435537..30435573, 30437066..30437126,30437280..30437394,30437811..30437903, 30438239..30438287,30439526..30439626,30439730..30439832, 30439974..30441091,30442044..30442070)) /locus_tag="TCM_025063" /product="FAD-linked oxidases family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06480.1" /inference="similar to AA sequence:ricco:29333.m001099" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc543t10; alternateUTRof:Thecc1EG025063t1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc543t16" CDS complement(join(30428494..30428613,30429020..30429063, 30429295..30429425,30430073..30430152,30430280..30430342, 30431855..30431964,30432376..30432484,30432555..30432629, 30434760..30434856,30435403..30435464,30435537..30435573, 30437066..30437126,30437280..30437394,30437811..30437903, 30438239..30438287,30439526..30439626,30439730..30439832, 30439974..30440254)) /locus_tag="TCM_025063" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29333.m001099" /codon_start=1 /product="FAD-linked oxidases family protein isoform 1" /protein_id="EOY09666.1" /db_xref="TAIR:AT5G06580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94AX4" /translation="MAFSFWLARLRLLSCSKKSAVPNASRQSSYLDKFQFSGSQKNVP STTAEKTKTQFFSWSSSLLPLALAVSAGSLAFQAQNTQPSLCEPTNIDSRKVSIGGKT STEFVVKGIHKDVPQELIDELMAICQDNLTLDYDERFYHGKPQNSFHKAVNIPDVVVF PRSEEEVSQIVKSCDKYKVPIVPYGGATSIEGHTLSPNGGVCIDMTLMKRVKALHIED MDVIVEPGIGWMELNEYLEPYGLFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNV ISLKVVLANGDIVKTASRARKSAAGYDLTRLMIGSEGTLGVITEVTLRLQKIPEHSVV AMCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVNIANGKNLPEVPTLMFEFI GTEAYSLEQTKIVQRIVSEHNGSDFVFAEDPLAKKELWKIRKEALWACFAMEPNFEAM ISDVCVPLSHLAELISRSKQELDASSLVCTVIAHAGDGNFHTVILFDPNQEEQRREAE RLNQFMVYTALSMEGTCTGEHGVGTGKMKYLEKELGIEALKTMKRIKEALDPNNIMNP GKLIPPHVCF" CDS complement(join(30428494..30428613,30429020..30429063, 30429295..30429425,30430073..30430152,30430280..30430342, 30431855..30431964,30432376..30432484,30432555..30432629, 30434760..30434856,30435403..30435464,30435537..30435573, 30437066..30437126,30437280..30437394,30437811..30437903, 30438239..30438287,30439526..30439626,30439730..30439832, 30439974..30440254)) /locus_tag="TCM_025063" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29333.m001099" /codon_start=1 /product="FAD-linked oxidases family protein isoform 1" /protein_id="EOY09667.1" /db_xref="TAIR:AT5G06580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94AX4" /translation="MAFSFWLARLRLLSCSKKSAVPNASRQSSYLDKFQFSGSQKNVP STTAEKTKTQFFSWSSSLLPLALAVSAGSLAFQAQNTQPSLCEPTNIDSRKVSIGGKT STEFVVKGIHKDVPQELIDELMAICQDNLTLDYDERFYHGKPQNSFHKAVNIPDVVVF PRSEEEVSQIVKSCDKYKVPIVPYGGATSIEGHTLSPNGGVCIDMTLMKRVKALHIED MDVIVEPGIGWMELNEYLEPYGLFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNV ISLKVVLANGDIVKTASRARKSAAGYDLTRLMIGSEGTLGVITEVTLRLQKIPEHSVV AMCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVNIANGKNLPEVPTLMFEFI GTEAYSLEQTKIVQRIVSEHNGSDFVFAEDPLAKKELWKIRKEALWACFAMEPNFEAM ISDVCVPLSHLAELISRSKQELDASSLVCTVIAHAGDGNFHTVILFDPNQEEQRREAE RLNQFMVYTALSMEGTCTGEHGVGTGKMKYLEKELGIEALKTMKRIKEALDPNNIMNP GKLIPPHVCF" mRNA complement(join(30430317..30430544,30430750..30430806, 30431455..30431463,30431855..30431964,30432376..30432484, 30432555..30432629,30434760..30434856,30435403..30435464, 30435537..30435573,30437066..30437126,30437280..30437394, 30437811..30437903,30438239..30438287,30439526..30439626, 30439730..30439832,30439974..30440842,30441033..30441091, 30442044..30442070)) /locus_tag="TCM_025063" /product="FAD-linked oxidases family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06480.1" /inference="similar to AA sequence:ricco:29333.m001099" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc543t9; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc543t16" CDS complement(join(30430804..30430806,30431455..30431463, 30431855..30431964,30432376..30432484,30432555..30432629, 30434760..30434856,30435403..30435464,30435537..30435573, 30437066..30437126,30437280..30437394,30437811..30437903, 30438239..30438287,30439526..30439626,30439730..30439832, 30439974..30440254)) /locus_tag="TCM_025063" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29333.m001099" /codon_start=1 /product="FAD-linked oxidases family protein isoform 3" /protein_id="EOY09668.1" /db_xref="TAIR:AT5G06580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94AX4" /translation="MAFSFWLARLRLLSCSKKSAVPNASRQSSYLDKFQFSGSQKNVP STTAEKTKTQFFSWSSSLLPLALAVSAGSLAFQAQNTQPSLCEPTNIDSRKVSIGGKT STEFVVKGIHKDVPQELIDELMAICQDNLTLDYDERFYHGKPQNSFHKAVNIPDVVVF PRSEEEVSQIVKSCDKYKVPIVPYGGATSIEGHTLSPNGGVCIDMTLMKRVKALHIED MDVIVEPGIGWMELNEYLEPYGLFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNV ISLKVVLANGDIVKTASRARKSAAGYDLTRLMIGSEGTLGVITEVTLRLQKIPEHSVV AMCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQVRAVNIANGKNLPEVPTLMFEFI GTEAYSLEQTKIVQRIVSEHNGSDFVFAEDPLAKKELWKYEG" mobile_element complement(30433313..30433399) /note="source:CACAO_M_E57143_F88_scaffold_8 2030 2109" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(30440452..30444072) /locus_tag="TCM_025064" /note="dbxref CacaoGD:Thecc1EG025064" mRNA complement(join(30440452..30440842,30441033..30441091, 30442044..30442181,30442256..30442504,30442612..30442856, 30443569..30443782,30444024..30444072)) /locus_tag="TCM_025064" /product="SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01022506001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004641t1" /inference="similar to AA sequence:Phytozome:GSVIVT01022506001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7144t3" CDS complement(join(30440737..30440842,30441033..30441091, 30442044..30442181,30442256..30442504,30442612..30442856, 30443569..30443782)) /locus_tag="TCM_025064" /note="paralog of Thecc1EG004641t1" /codon_start=1 /product="SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related" /protein_id="EOY09669.1" /db_xref="Phytozome:GSVIVT01022506001" /db_xref="TAIR:AT2G38920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H9P3" /translation="MKFGETFKEYLHGDQEWFLEKFSHVEYKRLKKVLKSCRTCKALP DSNNKTEQREEEENPTLSQFCQCQSCPVCDQMFFTELMREAMDIAGCFSSRARHLLHL HVATGMQRYVLRLRQCFKNDHQALVQEGQMLIEYISMNAIAIGKILKKYDKVHSSVNG KNFKSKMRAEHLELLQSPWLVELGAFYLNFNGSDGGEFIQFSGSFVCDLSATEPVMTM MLPNSIKLEYDLTCAICLEIVFNPYALSCSHLFCKSCACSAASVMIFQGLKATSPDSK CPICREAGVYANAVHMLELDLVIKRRHKDYWKERLIAERAEMVKQSKEYWELQTKYVI GY" gene complement(30445987..30448624) /locus_tag="TCM_025065" /note="dbxref CacaoGD:Thecc1EG025065" mRNA complement(join(30445987..30446399,30446514..30447101, 30447207..30447476,30447890..30448104,30448263..30448624)) /locus_tag="TCM_025065" /product="Transducin family protein / WD-40 repeat family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01011325001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027256t1" /inference="similar to AA sequence:Phytozome:GSVIVT01011325001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc265t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc265t2" mRNA complement(join(30445987..30446399,30446514..30447101, 30447207..30447476,30447890..30448168,30448263..30448624)) /locus_tag="TCM_025065" /product="Transducin family protein / WD-40 repeat family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01011325001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027256t1" /inference="similar to AA sequence:ricco:29333.m001097" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc265t2; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc265t2" CDS complement(join(30446259..30446399,30446514..30447101, 30447207..30447476,30447890..30448168,30448263..30448322)) /locus_tag="TCM_025065" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29333.m001097; paralog of Thecc1EG027256t1" /codon_start=1 /product="Transducin family protein / WD-40 repeat family protein isoform 1" /protein_id="EOY09670.1" /db_xref="TAIR:AT4G33270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K2T7" /translation="MHSRTPLQELLLQRRNTQDDLDRFIPNRSAMDFDYAHYMLTEGR KGIEKPDIIGSPSREAYQKRLAEALNMNRTRILAFKNKPPTSDGDGMIHREMGSPHQS KSTKKRRHISQTSERTLDAPEILDDFYLNLLDWGCNNVLAIALNDKVYLWDASNGSAS ELVTVSYEDGPITSVSWAPDGRHIAIGLNNSHVQLWDCQVKRQLRTLRGGHHHETRVN TLAWNNHILTTGGMDAKVINNDVRVREHTVACYMGHQLEVCGLKWSSSGKQLASGGND NLLFIWDRFMAPSNSRTQWLHRLDDHTAAVKAIAWCPFQGNLLASGGGGSDQCIRFWN THTGVCLNSVDTGSQVCALLWNKHERELLSSHGFTDNQLILWKYPSMRKMAELLGHTS RALYMAESPDGCTVATAAGDETLRLWNVFGTPEVAKPAVKLKPEPFANVCRIR" CDS complement(join(30446259..30446399,30446514..30447101, 30447207..30447476,30447890..30448018)) /locus_tag="TCM_025065" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG027256t1" /codon_start=1 /product="Transducin family protein / WD-40 repeat family protein isoform 2" /protein_id="EOY09671.1" /db_xref="Phytozome:GSVIVT01011325001" /db_xref="TAIR:AT4G33270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K2T7" /translation="MNRTRILAFKNKPPTSDGDGMIHREMGSPHQSKSTKKRRHISQT SERTLDAPEILDDFYLNLLDWGCNNVLAIALNDKVYLWDASNGSASELVTVSYEDGPI TSVSWAPDGRHIAIGLNNSHVQLWDCQVKRQLRTLRGGHHHETRVNTLAWNNHILTTG GMDAKVINNDVRVREHTVACYMGHQLEVCGLKWSSSGKQLASGGNDNLLFIWDRFMAP SNSRTQWLHRLDDHTAAVKAIAWCPFQGNLLASGGGGSDQCIRFWNTHTGVCLNSVDT GSQVCALLWNKHERELLSSHGFTDNQLILWKYPSMRKMAELLGHTSRALYMAESPDGC TVATAAGDETLRLWNVFGTPEVAKPAVKLKPEPFANVCRIR" gene 30450940..30455007 /locus_tag="TCM_025066" /note="dbxref CacaoGD:Thecc1EG025066" mRNA join(30450940..30451346,30451649..30453246, 30454189..30454235,30454668..30455007) /locus_tag="TCM_025066" /product="Gb:AAF23201.1, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400048874" /inference="similar to AA sequence:ricco:29333.m001096" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc259t1" CDS join(30451810..30453246,30454189..30454235, 30454668..30454770) /locus_tag="TCM_025066" /note="dbxref ricco:29333.m001096" /codon_start=1 /product="Gb:AAF23201.1, putative" /protein_id="EOY09672.1" /db_xref="TAIR:AT5G06560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FG14" /translation="MESEVFSPPRDLVKCCDCGCTTCSLIGDPSSTWLRSVKRKYDEF ETGNGFYVPGLDLYSNARVQIENECAALRETVSSQQAAIHDLYAELEEERNASSSAAT EAMSMILKLQREKAEIQMEARQFKRFAEEKMAHDQQEITVLEDLLYKREQAIQALTCE VQAYKHRMMSYGLTEAEAEGEKDVQIRNLGVAENFGVQVDLPAYDYPPLKCNLNENPG DDVEDVEKYAFGETPRAREHLRNLEQRICQMERNPSSSHLSHVDGDFPGTKNVLEKVI VGHSPRRPKHSRRVSTDSLNSVLAKEMGSEFTSDSPRFNIGSPRFNTSSPRFNTSFKK VEFVSEMEEISSSRRMDNASEVGDDMSDRVYTIDSVHNGVPYNGTAEPKPGVGICDDY ASTPRETLNLPDVSDPDIKKLYMRLQALEVDRESMRQAIISMRTDKAQLVLLKEIAQH LCKDMSPERRVIVRKPSILGSLPFMSVFKWVVSFIFWKRKARRSKYLYGLSANNVGLL MLLDKGPRLRQWRCLSSTQV" gene 30457477..30461346 /locus_tag="TCM_025067" /note="dbxref CacaoGD:Thecc1EG025067" mRNA join(30457477..30459150,30460802..30461346) /locus_tag="TCM_025067" /product="Transferase, transferring glycosyl groups, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s06550.1" /inference="similar to AA sequence:Phytozome:POPTR_0016s06550.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05817t00001" CDS join(30457856..30459150,30460802..30461039) /locus_tag="TCM_025067" /codon_start=1 /product="Transferase, transferring glycosyl groups, putative" /protein_id="EOY09673.1" /db_xref="Phytozome:POPTR_0016s06550.1" /db_xref="TAIR:AT5G06550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SDN5" /translation="MLSCSRSLLSQTIKRKRKTKTKIKLKANKNVSRKQKFIAKNQQL ESNEEEEGFDLKSSAPSHSHGVQPLGNLYFNPGSTNSRNTGLGNLQILSDELVLEILG LLEGTQLGVVATVSKSFYVFTSHEPLWRNLVLDNLKGRFLYNGSWKFTYIFIFHPSFD VSKSTCFSGLRVRDFYSDYLFQSWLCANLEMKPEWLERDNIIRKIGIRVEDFVMNFEE PNKPVLLEGCMENWDALKKWDRDYLVNLCGDVQFSVGPVKMRLEDYYRYSDQVKEERP LYLFDPKFVEKIPTLGLEYEVPVYFREDLFSVLGNERPDYRWIIIGPAGSGSSFHIDP NSTSAWNAVIRGSKKWVLFPPDVVPPGVHPSPDGAEVACPVSIIEWFMNFYGATKNWK KRPIECICKAGEVIFVPNGWWHLVINLEESIAITQNYVSRRNLLNVLDFLKKPNASEL VSGTRDRINLYEKFKNAMEASFPGTIDELSQKAEEKKAQQKLSFWDSVTDSKVGAFKF SF" gene complement(30460151..30487332) /locus_tag="TCM_025068" /note="dbxref CacaoGD:Thecc1EG025068" mRNA complement(join(30460151..30460554,30461802..30463847)) /locus_tag="TCM_025068" /product="Cysteine/Histidine-rich C1 domain family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT5G03360.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025071t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05820.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.31 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7192t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7192t1" mRNA complement(join(30461611..30463283,30463638..30463952, 30470602..30470668,30479516..30479650,30487310..30487332)) /locus_tag="TCM_025068" /product="Cysteine/Histidine-rich C1 domain family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT5G03360.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025071t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05820.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.30 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc118t11_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7192t1; inference alignment:Newbler:10:TSA:cgbaP2_g02044t00001" CDS complement(join(30461817..30463283,30463638..30463949)) /locus_tag="TCM_025068" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG025071t1" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein, putative isoform 2" /protein_id="EOY09675.1" /db_xref="Phytozome:POPTR_0016s05820.1" /db_xref="TAIR:AT5G40320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9P591" /translation="MATRAVAEGPHSGQLQQYYSFFKKTLLLADKIVRSILKREMDLN HFSHDHPLVFIQEWSRASEEEEEGVCCFACEERVEGPCYCCSGCKFFLHKTCAELELS PEINNFHDRRHPLTLLQNPPIHLDSCSCYLCKIKWKGFVYYCNVCEFGLRPEDVSPLP EITTVNHEHPWTLLSRPMSFICDFCGTDGDRIPYLCTTCNFIVHKSCISLPRVITIMR HHHRLSHSYSLPENQFEKWECKICHKKVNTGYGSYYCPDSECNYIAHVNCATDRSIWD PKFNEDERSEGESINWITDVIQTKCLKGDEIATEIKHAFHDHNLTLTFSGEVKDDINC DGCMRPISTPFYGCEQCRFSLHRNCAELPREKRHPSHKHLLALTKNDESLYCYACDRF HQGFNYECNKRDCSFKIDIQCSLLSDTFRHPSHEHLLFLDHNCNGNCSGCNEGISLAY KCMQGCEFILEFRCLTLPQIAWYKYDNHPLTLTYDEGSDPYQFYCDICEEERDPNEWF YYCADCDNAAHPECILGDLPFIKLGRTWKAYRHPHLLTFVKNIWNCPRCNVCKKLCNG QALQCPECNLIFHWKCQWDLPNLNGV" CDS complement(30461817..30463829) /locus_tag="TCM_025068" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG025071t1" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein, putative isoform 1" /protein_id="EOY09674.1" /db_xref="Phytozome:POPTR_0016s05820.1" /db_xref="TAIR:AT2G19660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9P591" /translation="MDLNHFSHDHPLVFIQEWSRASEEEEEGVCCFACEERVEGPCYC CSGCKFFLHKTCAELELSPEVSHPFHPPHPLILLPKSPYSGSYSCDFCWGSFSGLVYH CASCQFDLDINCASIAGNFDKVEYPFHEHPLILIEKHNRIIRCDCLGCMKEISSSPFY KCLDCKNRKGYLHKECAELPLEINNFHDRRHPLTLLQNPPIHLDSCSCYLCKIKWKGF VYYCNVCEFGLRPEDVSPLPEITTVNHEHPWTLLSRPMSFICDFCGTDGDRIPYLCTT CNFIVHKSCISLPRVITIMRHHHRLSHSYSLPENQFEKWECKICHKKVNTGYGSYYCP DSECNYIAHVNCATDRSIWDPKFNEDERSEGESINWITDVIQTKCLKGDEIATEIKHA FHDHNLTLTFSGEVKDDINCDGCMRPISTPFYGCEQCRFSLHRNCAELPREKRHPSHK HLLALTKNDESLYCYACDRFHQGFNYECNKRDCSFKIDIQCSLLSDTFRHPSHEHLLF LDHNCNGNCSGCNEGISLAYKCMQGCEFILEFRCLTLPQIAWYKYDNHPLTLTYDEGS DPYQFYCDICEEERDPNEWFYYCADCDNAAHPECILGDLPFIKLGRTWKAYRHPHLLT FVKNIWNCPRCNVCKKLCNGQALQCPECNLIFHWKCQWDLPNLNGV" mobile_element complement(30464696..30465607) /note="source:CACAO_on_E683_scaffold_9 1316 2299" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 30467063..30468380 /locus_tag="TCM_025069" /note="dbxref CacaoGD:Thecc1EG025069" mRNA join(30467063..30467180,30467530..30468380) /locus_tag="TCM_025069" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is paralog medium, intron is none, protein is utrpoor_complete" CDS join(30467140..30467180,30467530..30467755) /locus_tag="TCM_025069" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09676.1" /translation="MRHLQSSNRTPSERRKLLNVLDFLKKPNAKEIVSGTRDIINLYE KFKNAIEASFAGTVDALTQKAENYNSFYFILSVVVNGLSMLNSL" gene complement(30468483..30472389) /locus_tag="TCM_025070" /note="dbxref CacaoGD:Thecc1EG025070" mRNA complement(join(30468483..30471345,30472112..30472389)) /locus_tag="TCM_025070" /product="Cysteine/Histidine-rich C1 domain family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025068t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05820.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.13 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc2038t1" CDS complement(30468726..30470744) /locus_tag="TCM_025070" /note="paralog of Thecc1EG025068t1" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein, putative" /protein_id="EOY09677.1" /db_xref="Phytozome:POPTR_0016s05820.1" /db_xref="TAIR:AT2G19660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9P591" /translation="MDLKHICHHHPLVFTQAWRRTGAQKKAYCSGCCERVKGPFYCCT DCKFYLHETCAQLELLPEISHPFHPPHPLILLPKSPNSGSYKCDFCLGGFSGLVYHCA SCEFHLDINCASIAGSFDKLEHPVHEHPLILIEKHDKIVKGDCLVCKKELSSGPICKC LDCRYVYLRKKCAELPREIYLFHDRRHPLILLQNPPMHSKSCFCYLCKIQWKGFVYYC YICEFGLTLEDVSSLPVIKAANHDHPWTLLSRPMSFICDFCGTDCDRTPYLCTKCNFI VHKNCISLPCTITIMRRHHPLSHSYSLTGNQFKKCECKICHKEVNTGYGSYYCTASDC NYVSHVNCATDKSIWDPKNEDGRSEGEFMNLVTDVIQTICIRGDVIAAEIKHGFHDDN LILTFSGEVKDDSNGDGCLRPISTPFYGCKQCCGFFLHRNCAELPTEKRHPSHKHLLA LTKNEDLVSCHACGHYHHGFSYKCKGRRCFGFQIDIQCSLLSDSFRHASHEHPLFLDH NCEGNCSACSKKIQGFYGNPSLGYKCMQGCKFILDFWCLTLPQIAWYKYNKHPFTLTY DGGSNTDQFYCDISEKERDPNQWFYYCNDSDNTVHPRCILGDLPFIKLGRTLKSFFHP RQLTFVKNIWNCPPCNVCKKLCNVQAIQCTECNILFHWECLCLSLQSN" mobile_element 30472354..30472417 /note="source:scaffold_1_CACTA_0030 645 709" /mobile_element_type="transposon:TIR/CACTA" mobile_element 30473121..30473410 /note="source:scaffold_1_CACTA_0008 12652 12912" /mobile_element_type="transposon:TIR/CACTA" mobile_element 30473486..30473598 /note="source:CACAO_Again_on_S_E228_scaffold_7 1 104" /mobile_element_type="transposon:TIR/hAT" mobile_element 30473592..30474812 /note="source:CACAO_Again_on_S_E228_scaffold_7 1801 3010" /mobile_element_type="transposon:TIR/hAT" gene complement(30475290..30487541) /locus_tag="TCM_025071" /note="dbxref CacaoGD:Thecc1EG025071" mRNA complement(join(30475290..30475927,30476079..30476537, 30477840..30479549,30487206..30487541)) /locus_tag="TCM_025071" /product="Cysteine/Histidine-rich C1 domain family protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT5G03360.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025068t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05820.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7217t1" CDS complement(join(30477855..30479549,30487206..30487535)) /locus_tag="TCM_025071" /note="paralog of Thecc1EG025068t1" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein, putative" /protein_id="EOY09678.1" /db_xref="Phytozome:POPTR_0016s05820.1" /db_xref="TAIR:AT2G19660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9P591" /translation="MDLKHFSHDHPLVFIQDWSRASEEEEEEEEGAFCFACEERVEGP CYCCSGCKFFLHKTCAELELSPEVSHPFHPPHPLILLPKSPYISGQHGCDLCCGSFSG LVYHCASCKFDLDINCASIVGNFDKVEHPAHEHPLILIEKHNRIIRCNCLGCMKEISS SPFYKCLDCKSRKVYLHKECAELPLEINNFHHRRHPLTLLHNRPIHSESCSCYLCKKQ WKGFVYYCNVCEFGLTPEDVSPLPEITTVNHEHPWTLLSRPMSFICDFCGTDGCRTPY LCTTCNFIVHKSCISLPRIITIMRHHHRLSHSYLFLKNQSEEWECKICHQEVNKEYGR YYCPDSECNYIAHVNCATDRSIWDPKFNEDERSEGESINWITDVIQTKCLKGDEIATE IKHAFHDHNLTLTFSGEVKDDINCDGCMRPISTPFYGCEQCRFFLHRNCAELPREKRH PSHKHLLALTKNDEFLYCYACDRLHHGFNYKCNKRGCYFKIDIQCSLLSDIFKHPSHK HQLFLDHNCHGDCSGCNNRRLLAYKCTQGCEFILDFECLTLPQIAWYKYDIHPLTLTY DSGSDPDQFYCDICEEERHPYKWFYYCADCDNAAHLECILGDLPFIKLGRTRQSYPHS HPLTFVKNIWNCPPCNVCKKLCNGQALQCTECNLICHWECQWNLPELNGV" gene 30480840..30483497 /locus_tag="TCM_025072" /note="dbxref CacaoGD:Thecc1EG025072" mRNA 30480840..30483497 /locus_tag="TCM_025072" /product="Pentatricopeptide repeat superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g39000.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025073t1" /inference="similar to AA sequence:Phytozome:Glyma19g39000.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.18 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc2307t1" CDS 30481015..30482769 /locus_tag="TCM_025072" /note="paralog of Thecc1EG025073t1" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein" /protein_id="EOY09679.1" /db_xref="Phytozome:Glyma19g39000.1" /db_xref="TAIR:AT5G06540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FG16" /translation="MIRTHIIFDIFAASRLISLCTDPSFGTTLLDYAFKVLSQVETPN PFIYNALIKGFSACQNPHKSFHFYTQLFRANILPDYISFPFLVRACAQLESLDMGVQA HGQIIKHGFENNVYVQNSLVHMYSTCGDVTAANAIFQRMTCLNVVSWTSMIAGLNKVG DVEMARKLFDTTPEKNLVTWSIMISGYAKNSYFEKAVELFQVLQEEGVQANETVMVSV ISSCAHLGAIELGEKAHEYIFRNNLSLNVILGTALVDMYARCGNIEKAIGVFEELPER DVLSWTALIAGLAMHGYAERALWFFSEMVKSGLKPRDISFTAVLSACSHRGLVGKVLE LFESMKRDFGIEPRLEHYGCVVDLLGRAGKLAEAEKFVLEMPVKPNAPIWGALLGARR IHRNAEIAERVGKILIPPLPEHSGYYVLLSNIYARTNRWENVEGMRQMMKEKGVKKPS GYSLIEVDGKVHNFTMGDKSHPEIDMIERTWEEILKKLRLAGYSGNASDALFDIDEEE KESALHRHCEKLAIAFGIMRTKASIGIQLVKILWVCEDCHTPTKLISKVFERELIVRG RNQFHHFRHGTCSCMDYW" mobile_element complement(30482805..30482900) /note="source:CACAO_on_S_E390_scaffold_9 1044 1145" /mobile_element_type="transposon:TIR/Mutator" mobile_element 30483021..30483861 /note="source:INTACT179F_F20_scaffold_3-int 10936 11837" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 30488377..30491301 /locus_tag="TCM_025073" /note="dbxref CacaoGD:Thecc1EG025073" mRNA 30488377..30491301 /locus_tag="TCM_025073" /product="Pentatricopeptide repeat (PPR) superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g39000.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025072t1" /inference="similar to AA sequence:Phytozome:Glyma19g39000.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.19 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1042t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc87t3" CDS 30488430..30490310 /locus_tag="TCM_025073" /note="paralog of Thecc1EG025072t1" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein" /protein_id="EOY09680.1" /db_xref="Phytozome:Glyma19g39000.1" /db_xref="TAIR:AT5G06540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FG16" /translation="MNISSNSSSSSKVLNTLRLKNPKLLLLESCKNLSQLKIIHGHMI RTHIIFDIFAASRLISLCTDPSFGTALLDYAFKIFSQIETPNLFIFNALIKGFSACQN PHQSFHFYTQLLRANILPDNLSFPFLVRACAQLESLDMGIQAHGQIIKHGFESNVYVQ NSLVHMYSTCGDIKAANAIFQRMTFLNVVSWTSMIAGLNKVGDVEMARKLFDTMPEKN LVTWSIMISGYAKNSYFEKAVELFQVLQEEGVQANETVMVSVISSCAHLGAIELGEKA HEYIFRNNLSLNVILGTALVDMYARCGSIEKAIGVFEELPERDVLSWTALIAGLAMHG YAERALWFFSEMVKSGLKPRDISFTAVLSACSHGGLVGKGLELFGSMKRDFGIEPRLE HYGCVVDLLGRAGKLAEAEKFVLEMPVKPNAPIWGALLGACRIHRNAEIAERVGKILI PLLPEHSGYYVLLSNIYARTNRWENVESMRQMMKEKGVKKPPGYSLIEVDGKVHNFTM GDKSHPEIDMIERTWEAILKKIRLAGYSGNTSDALFDIDEEEKESALYRHSEKLAIAF GIMRTKASMPIRIVKNLRVCEDCHTATKLISKVFERELIVRDRNRFHHFRHGTCSCMD YW" gene 30493426..30503794 /locus_tag="TCM_025074" /note="dbxref CacaoGD:Thecc1EG025074" mRNA join(30493426..30493456,30493594..30493637, 30493776..30493937,30494048..30494164,30495682..30495738, 30496860..30496937,30497165..30497209,30497560..30497619, 30497770..30497892,30499087..30499164,30499435..30499504, 30499769..30499876,30500405..30500538,30500750..30500829, 30501667..30501715,30501814..30501879,30502766..30503219, 30503510..30503794) /locus_tag="TCM_025074" /product="Nucleotide-sugar transporter family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s07700.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021551t2" /inference="similar to AA sequence:Phytozome:POPTR_0008s07700.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7154t1" CDS join(30493782..30493937,30494048..30494164, 30495682..30495738,30496860..30496937,30497165..30497209, 30497560..30497619,30497770..30497892,30499087..30499164, 30499435..30499504,30499769..30499876,30500405..30500538, 30500750..30500829,30501667..30501715,30501814..30501864) /locus_tag="TCM_025074" /note="paralog of Thecc1EG021551t2" /codon_start=1 /product="Nucleotide-sugar transporter family protein" /protein_id="EOY09681.1" /db_xref="Phytozome:POPTR_0008s07700.1" /db_xref="TAIR:AT2G43240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHY7" /translation="MIECSVCHSKIASPNSKAVSRAYDRHRNHVSSKTRFLNVLLVSG DCVLVGLQPILVYMSKVDGGFNFSPISVNFLTEVAKVIFAIVMLLFQARHKKVGEKSL LSISTLAQAARNNLLLAVPALLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAILLK MIMKRRFSIIQWEALALLLIGISINQLRSLPEGTTSFGLPAATGAYLYTIIFVTVPSL ASVFNEYAMKSQFETSIYHQNLFLYGYGAMFNFLAILGIAIFKGPSSLDILQGHSKAT MLLICNNAAQGILSSFFFKYADTILKKYSSTIATIFTGIASAVLFGHTLTINFVLGIS VVIISMHQFFSALSKVKDEQQGSSFEMVDSQDSQRSKDASFLNMTAGANEDAGHRVNE EEKRPLLPV" mobile_element 30495638..30495681 /note="source:CACAO_M_E49556_F134_scaffold_7 2050 2093" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30495646..30495707 /note="source:CACAO_Mariner_E36_scaffold_2 1180 1241" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene 30504853..30516731 /locus_tag="TCM_025075" /note="dbxref CacaoGD:Thecc1EG025075" mRNA join(30504853..30505451,30507155..30507279, 30507535..30507640,30507772..30507862,30509814..30509986, 30510760..30510864,30510998..30511086,30512185..30512292, 30512614..30512704,30512812..30512901,30514531..30514578, 30515281..30515352,30515426..30515525,30515603..30515729, 30515990..30516731) /locus_tag="TCM_025075" /product="IBR domain-containing protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29929.m004529" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020112t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s18800.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc286t19" mRNA join(30504876..30505451,30507155..30507279, 30507535..30507640,30507772..30507862,30509814..30509986, 30510760..30510864,30510998..30511086,30512185..30512292, 30512614..30512704,30512812..30512901,30514531..30514578, 30515281..30515352,30515426..30515448,30515526..30515729, 30515990..30516382) /locus_tag="TCM_025075" /product="IBR domain-containing protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29929.m004529" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020112t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s18800.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc591t15; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc286t19" CDS join(30505260..30505451,30507155..30507279, 30507535..30507640,30507772..30507862,30509814..30509986, 30510760..30510864,30510998..30511086,30512185..30512292, 30512614..30512704,30512812..30512901,30514531..30514578, 30515281..30515352,30515426..30515525,30515603..30515729, 30515990..30516263) /locus_tag="TCM_025075" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG020112t1" /codon_start=1 /product="IBR domain-containing protein isoform 1" /protein_id="EOY09682.1" /db_xref="Phytozome:POPTR_0010s18800.1" /db_xref="TAIR:AT1G65430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8W468" /translation="MESEDDIDMHDANNESGEDDFYSGGDDDAGAMAAYDDSDADVAD YEFIDNDSDDSDDLVSHRYQQNYTVLSEVDICQRQEDDIMRVSTVLSISKVEAGILLR YYNWSVSKVHDEWFADEEKVRRSVGLLEKPVVPFPDGREMTCGICFETYPYDRLHTAA CGHPFCNSCWAGYISTSINDGPGCLMLRCPDPSCAAAVGQDMINVLASDEDKEKYFRY FIRSYVEDNRKTKWCPAPGCDYAVDFILGSGSYDVTCRCSYSFCWNCTEEAHRPVDCG TVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLG AWSDHGERTGGFYACNRYETAKQEGVYDEAEKRREMAKNSLERYTHYYERWATNQSSR QKALADLQQMQTVHLEKLSDRQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPE HEHAKRQFFEYLQGEAESGLERLHQCAEKELQVYLNAEGPSKDFNEFRTKLAGLTSVT RNYFENLVRALENGLSDVDSHGACSRMGSSKSLGGGSSRGRSGKAKGSTSRSSGSSRN IDDSGHWSCEYCTYANVKSATICQMCQQRR" CDS join(30505260..30505451,30507155..30507279, 30507535..30507640,30507772..30507862,30509814..30509986, 30510760..30510864,30510998..30511086,30512185..30512292, 30512614..30512704,30512812..30512901,30514531..30514578, 30515281..30515352,30515426..30515448,30515526..30515729, 30515990..30516263) /locus_tag="TCM_025075" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG020112t1" /codon_start=1 /product="IBR domain-containing protein isoform 2" /protein_id="EOY09683.1" /db_xref="Phytozome:POPTR_0010s18800.1" /db_xref="TAIR:AT1G65430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8W468" /translation="MESEDDIDMHDANNESGEDDFYSGGDDDAGAMAAYDDSDADVAD YEFIDNDSDDSDDLVSHRYQQNYTVLSEVDICQRQEDDIMRVSTVLSISKVEAGILLR YYNWSVSKVHDEWFADEEKVRRSVGLLEKPVVPFPDGREMTCGICFETYPYDRLHTAA CGHPFCNSCWAGYISTSINDGPGCLMLRCPDPSCAAAVGQDMINVLASDEDKEKYFRY FIRSYVEDNRKTKWCPAPGCDYAVDFILGSGSYDVTCRCSYSFCWNCTEEAHRPVDCG TVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLG AWSDHGERTGGFYACNRYETAKQEGVYDEAEKRREMAKNSLERYTHYYERWATNQSSR QKALADLQQMQTVHLEKLSDRQCQPESQLKFITEAWLQIVECRRVLYVSLSISYGILF LFTLHYSCPVCLAGEAESGLERLHQCAEKELQVYLNAEGPSKDFNEFRTKLAGLTSVT RNYFENLVRALENGLSDVDSHGACSRMGSSKSLGGGSSRGRSGKAKGSTSRSSGSSRN IDDSGHWSCEYCTYANVKSATICQMCQQRR" gene 30517520..30535445 /locus_tag="TCM_025077" /note="dbxref CacaoGD:Thecc1EG025077" mRNA join(30517520..30517717,30520152..30520254, 30522750..30522830,30523020..30523127,30523305..30523385, 30523474..30523562,30523636..30523769,30523871..30523911, 30524334..30524469,30524733..30524801,30524895..30524959, 30525047..30525163,30525296..30525331,30526420..30526488, 30526654..30526716,30526809..30529896,30530327..30530388, 30530491..30530558,30531238..30532030,30533186..30533712, 30534025..30535445) /locus_tag="TCM_025077" /product="SNF2 domain-containing protein / helicase domain-containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g17220.1" /inference="similar to AA sequence:ricco:28842.m000937" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc659t7" CDS join(30520195..30520254,30522750..30522830, 30523020..30523127,30523305..30523385,30523474..30523562, 30523636..30523769,30523871..30523911,30524334..30524469, 30524733..30524801,30524895..30524959,30525047..30525163, 30525296..30525331,30526420..30526488,30526654..30526716, 30526809..30529896,30530327..30530388,30530491..30530558, 30531238..30532030,30533186..30533712,30534025..30534469) /locus_tag="TCM_025077" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28842.m000937" /codon_start=1 /product="SNF2 domain-containing protein / helicase domain-containing protein isoform 1" /protein_id="EOY09684.1" /db_xref="TAIR:AT3G12810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LTV5" /translation="MASKGPRSKLEHETRARRQKALEAPREPQRPKTHWDHVLEEMVW LSKDFESERKWKLAQAKKVALRASKGMLDQATRGEKKLKEEEQRLRKVALNISKDVKK FWMKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLVDPHRPVQQCR AQHQLNSPGKADMNDVGEPLELNADADEDFDVHSEEESEDDEQTIEEDEALITAEERQ EELAALNSEIDLPLEVLLKRYDVERVSRESSPEKREDAIESISVKDNNSNGNCFSASS KIDTTNSLDRRSNESNGGLSLDIEASPPRNLSESSGELAKEDVPYDFSDEQEDGDFTL AGEEKDDETTLSEEEELAKADSSNPIDELALLQKESEIPVEELLARYKKDFSGDDVSG DESEYASALSEDLLDLPAHQNVETREEGSAKDENLETSAGRGVVHPSAEERDGSPDRK PEDGMESEIRIADAAAAARSAQPTGNTFSTTNVRTKFPFLLKHPLREYQHIGLDWLVT MYEKRLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLRW CPAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDE AHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKD WFSNPISGMIDGQERVNKEVVDRLHNVLRPFILRRLKRDVEKQLPMKHEHVIYCRLSR RQRNLYEDFIASSETQATLASANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMGGI DIQLSSSICSILSPGPFSTVDLKNLGILFTDLDFSMTSWESDEVEALATPSNLIEERA DQDNLEEIGTFSKHHKSLRGTNIFEEIRNALREERLREAKQRAASIAWWNSLRCRKKP VYSTTLCELLSVKHPAFDIHHQKADRRSYLYSSRLAEIVLSPVERFQAMIHLVESFMF AIPAARAPAPVCWCSKTGTSVFLHPTYVEKCAETLLPLVTPIRPALVRRQVYFPDKRL IQFDCGKLQELAVLLRRLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQP EERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCH RIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTEFFKKLDPMELFS GHRTLSVKSIQKEKNHNSGIEVSVSNDDVEAALKYAEDEADYMALKKVEQEEAVDNQE FTEEAMGKVEDDEFVNEDDMKADESADQGGLMTASNKDNGLILNGVGPMEEKALTFAG REEDVDMLADVKQMAAAAAAAGQAISSLENQLRPIDRYAIRFLELWDPLIDKGTMNSE VRFEEAEWELDRIEKYKEEMEAEIDDDEEPLVYEKWDADFATEAYRQQVALAQHQLME ELEYEAKEKEEADDGNFDAMNEMVSEPKPKSKKKKKPKKAKFKSLKKGSLSSEVKPAK EEPKAEHMSIDDDVNSHEELSYSDIASPSYHVPKKRKKVEIVHDAEEGKSTKKKPKKL KKPPELRPVYWDPNAIRKRNDDCAEVKPCESLAVEFEQKPASRSKTGGKISITSMPVK RVLMIKPEKLKKGNIWSRDCVPSPDSWLPQEDAILCAVVHEYGPHWSLVSETLYSMTA GGFYRGRYRHPVHCCERYRELIQRHILAAPDSSVNEKFSNAGSGKALLKVTEDNIRML LNFAAGQPDHELLVQKHFTALLASVWRVKSRPENRQNVSSSRNGVRLGGRFLSPFLSH TPQGSAKEPAQRMKFTNLRECSKLLSAALHDASNRQRSDTVSSSDRRGDSPVIAECLE ITLEIQESGDSMIPFPPVINLSIYGSDLVTSRNETTGEDLHLKASNVAAENRSRAAAR ACVGGGLGWASSAFPANDSKSRSGSKLPSLGKHKLSVSDTMRSKSKLKKASMEHGDVH NLFPEQVFQPVATIAPNDPYLRCDLTSVTNDSSWADVVDSDLCCSMDEALSLESEVYE VVPHSYIAGFISGLDDCSMLPEYTDIG" mRNA join(30524934..30524966,30525047..30525163, 30525296..30525343,30526420..30526488,30526654..30526716, 30526809..30529896,30530327..30530388,30530491..30530558, 30531238..30532030,30533186..30533712,30534025..30535169) /locus_tag="TCM_025077" /product="SNF2 domain-containing protein / helicase domain-containing protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g17220.1" /inference="similar to AA sequence:ricco:28842.m000937" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc659t7; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc659t7" mRNA join(30524934..30524966,30525047..30525163, 30525296..30525331,30526420..30526488,30526654..30526716, 30526809..30529896,30530327..30530388,30530491..30530558, 30531238..30532030,30533186..30533712,30534025..30535169) /locus_tag="TCM_025077" /product="SNF2 domain-containing protein / helicase domain-containing protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g17220.1" /inference="similar to AA sequence:ricco:28842.m000937" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc659t12; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc659t7" mRNA join(30524934..30524966,30525047..30525163, 30525296..30525331,30526420..30526488,30526654..30526716, 30526809..30529896,30530327..30530388,30530491..30530558, 30531238..30532030,30533186..30533712,30534030..30535169) /locus_tag="TCM_025077" /product="SNF2 domain-containing protein / helicase domain-containing protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g17220.1" /inference="similar to AA sequence:ricco:28842.m000937" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc659t4; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc659t7" CDS join(30525341..30525343,30526420..30526488, 30526654..30526716,30526809..30529896,30530327..30530388, 30530491..30530558,30531238..30532030,30533186..30533712, 30534025..30534469) /locus_tag="TCM_025077" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28842.m000937" /codon_start=1 /product="SNF2 domain-containing protein / helicase domain-containing protein isoform 2" /protein_id="EOY09685.1" /db_xref="TAIR:AT3G12810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LTV5" /translation="MDDETTLSEEEELAKADSSNPIDELALLQKESEIPVEELLARYK KDFSGDDVSGDESEYASALSEDLLDLPAHQNVETREEGSAKDENLETSAGRGVVHPSA EERDGSPDRKPEDGMESEIRIADAAAAARSAQPTGNTFSTTNVRTKFPFLLKHPLREY QHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVM LNWETEFLRWCPAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLVIQDSKVFKR KKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPH IFQSHQEFKDWFSNPISGMIDGQERVNKEVVDRLHNVLRPFILRRLKRDVEKQLPMKH EHVIYCRLSRRQRNLYEDFIASSETQATLASANFFGMISVIMQLRKVCNHPDLFEGRP IVSSFDMGGIDIQLSSSICSILSPGPFSTVDLKNLGILFTDLDFSMTSWESDEVEALA TPSNLIEERADQDNLEEIGTFSKHHKSLRGTNIFEEIRNALREERLREAKQRAASIAW WNSLRCRKKPVYSTTLCELLSVKHPAFDIHHQKADRRSYLYSSRLAEIVLSPVERFQA MIHLVESFMFAIPAARAPAPVCWCSKTGTSVFLHPTYVEKCAETLLPLVTPIRPALVR RQVYFPDKRLIQFDCGKLQELAVLLRRLKSEGHRALIFTQMTKMLDILEAFINLYGYT YMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPA MDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTEFF KKLDPMELFSGHRTLSVKSIQKEKNHNSGIEVSVSNDDVEAALKYAEDEADYMALKKV EQEEAVDNQEFTEEAMGKVEDDEFVNEDDMKADESADQGGLMTASNKDNGLILNGVGP MEEKALTFAGREEDVDMLADVKQMAAAAAAAGQAISSLENQLRPIDRYAIRFLELWDP LIDKGTMNSEVRFEEAEWELDRIEKYKEEMEAEIDDDEEPLVYEKWDADFATEAYRQQ VALAQHQLMEELEYEAKEKEEADDGNFDAMNEMVSEPKPKSKKKKKPKKAKFKSLKKG SLSSEVKPAKEEPKAEHMSIDDDVNSHEELSYSDIASPSYHVPKKRKKVEIVHDAEEG KSTKKKPKKLKKPPELRPVYWDPNAIRKRNDDCAEVKPCESLAVEFEQKPASRSKTGG KISITSMPVKRVLMIKPEKLKKGNIWSRDCVPSPDSWLPQEDAILCAVVHEYGPHWSL VSETLYSMTAGGFYRGRYRHPVHCCERYRELIQRHILAAPDSSVNEKFSNAGSGKALL KVTEDNIRMLLNFAAGQPDHELLVQKHFTALLASVWRVKSRPENRQNVSSSRNGVRLG GRFLSPFLSHTPQGSAKEPAQRMKFTNLRECSKLLSAALHDASNRQRSDTVSSSDRRG DSPVIAECLEITLEIQESGDSMIPFPPVINLSIYGSDLVTSRNETTGEDLHLKASNVA AENRSRAAARACVGGGLGWASSAFPANDSKSRSGSKLPSLGKHKLSVSDTMRSKSKLK KASMEHGDVHNLFPEQVFQPVATIAPNDPYLRCDLTSVTNDSSWADVVDSDLCCSMDE ALSLESEVYEVVPHSYIAGFISGLDDCSMLPEYTDIG" CDS join(30527022..30529896,30530327..30530388, 30530491..30530558,30531238..30532030,30533186..30533712, 30534025..30534469) /locus_tag="TCM_025077" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:28842.m000937" /codon_start=1 /product="SNF2 domain-containing protein / helicase domain-containing protein isoform 3" /protein_id="EOY09686.1" /db_xref="TAIR:AT3G12810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LTV5" /translation="MESEIRIADAAAAARSAQPTGNTFSTTNVRTKFPFLLKHPLREY QHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVM LNWETEFLRWCPAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLVIQDSKVFKR KKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPH IFQSHQEFKDWFSNPISGMIDGQERVNKEVVDRLHNVLRPFILRRLKRDVEKQLPMKH EHVIYCRLSRRQRNLYEDFIASSETQATLASANFFGMISVIMQLRKVCNHPDLFEGRP IVSSFDMGGIDIQLSSSICSILSPGPFSTVDLKNLGILFTDLDFSMTSWESDEVEALA TPSNLIEERADQDNLEEIGTFSKHHKSLRGTNIFEEIRNALREERLREAKQRAASIAW WNSLRCRKKPVYSTTLCELLSVKHPAFDIHHQKADRRSYLYSSRLAEIVLSPVERFQA MIHLVESFMFAIPAARAPAPVCWCSKTGTSVFLHPTYVEKCAETLLPLVTPIRPALVR RQVYFPDKRLIQFDCGKLQELAVLLRRLKSEGHRALIFTQMTKMLDILEAFINLYGYT YMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPA MDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTEFF KKLDPMELFSGHRTLSVKSIQKEKNHNSGIEVSVSNDDVEAALKYAEDEADYMALKKV EQEEAVDNQEFTEEAMGKVEDDEFVNEDDMKADESADQGGLMTASNKDNGLILNGVGP MEEKALTFAGREEDVDMLADVKQMAAAAAAAGQAISSLENQLRPIDRYAIRFLELWDP LIDKGTMNSEVRFEEAEWELDRIEKYKEEMEAEIDDDEEPLVYEKWDADFATEAYRQQ VALAQHQLMEELEYEAKEKEEADDGNFDAMNEMVSEPKPKSKKKKKPKKAKFKSLKKG SLSSEVKPAKEEPKAEHMSIDDDVNSHEELSYSDIASPSYHVPKKRKKVEIVHDAEEG KSTKKKPKKLKKPPELRPVYWDPNAIRKRNDDCAEVKPCESLAVEFEQKPASRSKTGG KISITSMPVKRVLMIKPEKLKKGNIWSRDCVPSPDSWLPQEDAILCAVVHEYGPHWSL VSETLYSMTAGGFYRGRYRHPVHCCERYRELIQRHILAAPDSSVNEKFSNAGSGKALL KVTEDNIRMLLNFAAGQPDHELLVQKHFTALLASVWRVKSRPENRQNVSSSRNGVRLG GRFLSPFLSHTPQGSAKEPAQRMKFTNLRECSKLLSAALHDASNRQRSDTVSSSDRRG DSPVIAECLEITLEIQESGDSMIPFPPVINLSIYGSDLVTSRNETTGEDLHLKASNVA AENRSRAAARACVGGGLGWASSAFPANDSKSRSGSKLPSLGKHKLSVSDTMRSKSKLK KASMEHGDVHNLFPEQVFQPVATIAPNDPYLRCDLTSVTNDSSWADVVDSDLCCSMDE ALSLESEVYEVVPHSYIAGFISGLDDCSMLPEYTDIG" CDS join(30527022..30529896,30530327..30530388, 30530491..30530558,30531238..30532030,30533186..30533712, 30534030..30534036) /locus_tag="TCM_025077" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:28842.m000937" /codon_start=1 /product="SNF2 domain-containing protein / helicase domain-containing protein isoform 4" /protein_id="EOY09687.1" /db_xref="TAIR:AT3G12810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LTV5" /translation="MESEIRIADAAAAARSAQPTGNTFSTTNVRTKFPFLLKHPLREY QHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVM LNWETEFLRWCPAFKILTYFGSAKERKFKRQGWLKPNSFHVCITTYRLVIQDSKVFKR KKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPH IFQSHQEFKDWFSNPISGMIDGQERVNKEVVDRLHNVLRPFILRRLKRDVEKQLPMKH EHVIYCRLSRRQRNLYEDFIASSETQATLASANFFGMISVIMQLRKVCNHPDLFEGRP IVSSFDMGGIDIQLSSSICSILSPGPFSTVDLKNLGILFTDLDFSMTSWESDEVEALA TPSNLIEERADQDNLEEIGTFSKHHKSLRGTNIFEEIRNALREERLREAKQRAASIAW WNSLRCRKKPVYSTTLCELLSVKHPAFDIHHQKADRRSYLYSSRLAEIVLSPVERFQA MIHLVESFMFAIPAARAPAPVCWCSKTGTSVFLHPTYVEKCAETLLPLVTPIRPALVR RQVYFPDKRLIQFDCGKLQELAVLLRRLKSEGHRALIFTQMTKMLDILEAFINLYGYT YMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPA MDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTEFF KKLDPMELFSGHRTLSVKSIQKEKNHNSGIEVSVSNDDVEAALKYAEDEADYMALKKV EQEEAVDNQEFTEEAMGKVEDDEFVNEDDMKADESADQGGLMTASNKDNGLILNGVGP MEEKALTFAGREEDVDMLADVKQMAAAAAAAGQAISSLENQLRPIDRYAIRFLELWDP LIDKGTMNSEVRFEEAEWELDRIEKYKEEMEAEIDDDEEPLVYEKWDADFATEAYRQQ VALAQHQLMEELEYEAKEKEEADDGNFDAMNEMVSEPKPKSKKKKKPKKAKFKSLKKG SLSSEVKPAKEEPKAEHMSIDDDVNSHEELSYSDIASPSYHVPKKRKKVEIVHDAEEG KSTKKKPKKLKKPPELRPVYWDPNAIRKRNDDCAEVKPCESLAVEFEQKPASRSKTGG KISITSMPVKRVLMIKPEKLKKGNIWSRDCVPSPDSWLPQEDAILCAVVHEYGPHWSL VSETLYSMTAGGFYRGRYRHPVHCCERYRELIQRHILAAPDSSVNEKFSNAGSGKALL KVTEDNIRMLLNFAAGQPDHELLVQKHFTALLASVWRVKSRPENRQNVSSSRNGVRLG GRFLSPFLSHTPQGSAKEPAQRMKFTNLRECSKLLSAALHDASNRQRSDTVSSSDRRG DSPVIAECLEITLEIQESGDSMIPFPPVINLSIYGSDLVTSRNETTGEDLHLKASNVA AENRSSS" mobile_element complement(30537357..30538528) /note="source:INTACT4_F104_scaffold_5-int 3676 4966" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(30538530..30540482) /note="source:INTACT4_F104_scaffold_5-int 3 1923" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(30541332..30543330) /locus_tag="TCM_025079" /note="dbxref CacaoGD:Thecc1EG025079" mRNA complement(join(30541332..30542792,30543250..30543330)) /locus_tag="TCM_025079" /product="Haloacid dehalogenase-like hydrolase superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30190.m011213" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016251t1" /inference="similar to AA sequence:ricco:30190.m011213" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.37 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc584t1" CDS complement(30541449..30542597) /locus_tag="TCM_025079" /note="dbxref ricco:30190.m011213; paralog of Thecc1EG016251t1" /codon_start=1 /product="Haloacid dehalogenase-like hydrolase superfamily protein" /protein_id="EOY09688.1" /db_xref="TAIR:AT4G11570.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LDD5" /translation="MVLVESIATTSLLGHRPLCGIISIKDVSCKQKSSSYCRFPSSEF IGKRIVESPLPRLIVGRLINLPIKALAMELTKEVHAYRDEERTPRNWNYQIDTSVGQK PCSWPPENRADNASLHNPLLRQERMGCGWLGALFEWEGVIIEDNPQLEKQAWLALAEE EGKSPPLAFILRRIEGMKNEQAISEVLCWSRDPAQLRRMAARKEEIYQALQGGIYRLR NGSQELVNALTRYKIPMALVSTRPRKVIETAIRATGIEGFFSVIVTAEDVHRGKPDPE MFVYAAQLLKFIPERCIVFGNSNQTVEAAHDARMKCVAVASKHPVYELGAADLVVSRL NKLSIVDLKNLADIESAEFGSGEPELELEMEEEEYGPSTSLAVDDIFW" mobile_element 30544218..30544681 /note="source:INTACT135F_F90_scaffold_2-int 12855 14006" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(30544555..30545541) /note="source:scaffold_2_CACTA_0244 12400 13390" /mobile_element_type="transposon:TIR/CACTA" mobile_element 30544682..30545618 /note="source:scaffold_10_CACTA_0140 6449 7314" /mobile_element_type="transposon:TIR/CACTA" mobile_element 30547877..30548255 /note="source:INTACT135F_F90_scaffold_2-int 12855 13986" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(30548256..30549286) /note="source:scaffold_2_CACTA_0244 12398 13390" /mobile_element_type="transposon:TIR/CACTA" mobile_element 30548371..30549359 /note="source:scaffold_10_CACTA_0140 6436 7312" /mobile_element_type="transposon:TIR/CACTA" gene 30552352..30553186 /locus_tag="TCM_025081" /note="dbxref CacaoGD:Thecc1EG025081" mRNA join(30552352..30552503,30552592..30552687, 30552767..30553186) /locus_tag="TCM_025081" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025084t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7170t1" CDS join(30552387..30552503,30552592..30552687, 30552767..30553000) /locus_tag="TCM_025081" /note="paralog of Thecc1EG025084t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09689.1" /translation="MSKVESASAMALHKSKRKSVSFIAAKRRSTISAHNTKQEKKKRG PMGRKTWCCTRSVGRSRKKSSLEAIVQKRERKKKMKAQVKEMEAFVSHMRTQMDCGSR LLLEGEATVEEFKALVAQMEEENKLHFMMILRGELLADHIQFTILP" mobile_element 30553389..30553758 /note="source:scaffold_1_CACTA_0008 14057 14396" /mobile_element_type="transposon:TIR/CACTA" gene complement(30554952..30557653) /locus_tag="TCM_025082" /note="dbxref CacaoGD:Thecc1EG025082" mRNA complement(join(30554952..30555330,30556596..30556657, 30556790..30556893,30557000..30557056,30557155..30557238, 30557323..30557390,30557504..30557653)) /locus_tag="TCM_025082" /product="Calreticulin 3-like protein" /inference="similar to AA sequence:Phytozome:Glyma09g38410.2" /note="quality class is weak, express is weak, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.16 coverage" CDS complement(join(30555191..30555330,30556596..30556657, 30556790..30556893,30557000..30557056,30557155..30557238, 30557323..30557390,30557504..30557630)) /locus_tag="TCM_025082" /codon_start=1 /product="Calreticulin 3-like protein" /protein_id="EOY09690.1" /db_xref="Phytozome:Glyma09g38410.2" /db_xref="TAIR:AT1G08450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HW29" /translation="MCSSSTFSNFISHNPPLITCRRPQLQDRRPLLNRKIPDIDNPEF EDDHDLYVLKPIKYVGIEVWQVKAGSIFDNVLICDDPEYVKKVVDQDSSVEKEAFEEA EKVRKAQEEEEARRARERKERGEEGKGVMIDDALTGSAIETDTKGLQSPMSPHKKAME MMQDHRLVIPASRCHLENLKHMLIAGSEFEMYSLVITACLYCAQRQHNILGSY" mobile_element 30555407..30556837 /note="source:CACAO_hAT_E3863_scaffold_9 1046 2475" /mobile_element_type="transposon:TIR/hAT" gene 30562674..30563290 /locus_tag="TCM_025083" /note="dbxref CacaoGD:Thecc1EG025083" mRNA join(30562674..30563005,30563095..30563290) /locus_tag="TCM_025083" /product="Integrase-type DNA-binding superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Sb02g002080.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034652t1" /inference="similar to AA sequence:frave:gene02623" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7260t1" CDS join(30562780..30563005,30563095..30563216) /locus_tag="TCM_025083" /note="dbxref frave:gene02623; paralog of Thecc1EG034652t1" /codon_start=1 /product="Integrase-type DNA-binding superfamily protein" /protein_id="EOY09691.1" /db_xref="TAIR:AT4G37750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I7I7" /translation="MKNMSRQDHVAHLRRKSSGFSRGASMYRGVTRHHQRGRWQASIG RVAGNKDLYLGTFSTREEAAEAYDIAAVKFRGSRNKEMDSNNEASDCNTPALTNGETL QPEVNNGNGSDGS" mobile_element 30563401..30564651 /note="source:scaffold_5_CACTA_0614 1448 2644" /mobile_element_type="transposon:TIR/CACTA" gene 30565730..30566577 /locus_tag="TCM_025084" /note="dbxref CacaoGD:Thecc1EG025084" mRNA join(30565730..30565904,30565993..30566076, 30566167..30566577) /locus_tag="TCM_025084" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025081t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03159t00001" CDS join(30565788..30565904,30565993..30566076, 30566167..30566397) /locus_tag="TCM_025084" /note="paralog of Thecc1EG025081t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09692.1" /translation="MSKGESGSAMALHKSKRNSVSFTAAKGRSTISAHKTKQEKKKRG PMGSKTRCCTWAVGRSPKKSSLEKREKKKMKARVTEMEAFVSDMRTQVDSERRLLLEG EATVEEFKALVAQKREENKLHFMMILRDELLADHIQFNILP" gene complement(30566086..30575351) /locus_tag="TCM_025085" /note="dbxref CacaoGD:Thecc1EG025085" mRNA complement(join(30566086..30566983,30567516..30567545, 30568740..30568796,30568879..30568971,30569056..30569123, 30569230..30569287,30569374..30569460,30569595..30569642, 30569735..30569791,30570039..30570297,30571058..30571250, 30572848..30572955,30574691..30575351)) /locus_tag="TCM_025085" /product="Calreticulin 3 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019060001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019985t1" /inference="similar to AA sequence:Phytozome:Glyma09g38410.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:PASA:2:TSA:puevd3b024270t1a2; inference alignment:Newbler:10:TSA:cgbaB_g07255t00001" mRNA complement(join(30566872..30566983,30567516..30567545, 30568536..30568637,30568740..30568796,30568879..30568971, 30569056..30569123,30569230..30569287,30569374..30569460, 30569595..30569642,30569735..30569791,30570039..30570297, 30571058..30571250,30572848..30572955,30574691..30575351)) /locus_tag="TCM_025085" /product="Calreticulin 3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019060001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019985t1" /inference="similar to AA sequence:Phytozome:Glyma09g38410.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07255t00001" CDS complement(join(30566972..30566983,30567516..30567545, 30568740..30568796,30568879..30568971,30569056..30569123, 30569230..30569287,30569374..30569460,30569595..30569642, 30569735..30569791,30570039..30570297,30571058..30571250, 30572848..30572955,30574691..30574790)) /locus_tag="TCM_025085" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG019985t1" /codon_start=1 /product="Calreticulin 3 isoform 2" /protein_id="EOY09694.1" /db_xref="Phytozome:Glyma09g38410.1" /db_xref="TAIR:AT1G08450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I529" /translation="MARHAPNVALGLLLFSLLLRFSVSEIIFEERFEDGWQSRWVKSD WKRTEGKAGGFKHTAGKWSGDPDDKGIQTSGDAKHFAISAKIPEFTNKNRTLVLQYSL RFEQDIECGGGYIKLLSAFVNQKKFGGDTPYSLMFGPDICGTQTKKLHVILSYQGQNY PLKKELECETDKLTHFYTFILRPDASYSVLIDNRERDSGTMYTDWDILPPRKIKDLKA KKPADWDDREYIDDPNAKKPEGYDSIPKAIPDPKAEEPDNWDEEEDGIWKRPKIPNPK YKGPWKPKKIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVFD NVLICDDPEYVKQVVDEVFANRELEKEAFEEAEKVRKAQEEEHPRDYLDDYHDEL" CDS complement(join(30566972..30566983,30567516..30567545, 30568536..30568637,30568740..30568796,30568879..30568971, 30569056..30569123,30569230..30569287,30569374..30569460, 30569595..30569642,30569735..30569791,30570039..30570297, 30571058..30571250,30572848..30572955,30574691..30574790)) /locus_tag="TCM_025085" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG019985t1" /codon_start=1 /product="Calreticulin 3 isoform 1" /protein_id="EOY09693.1" /db_xref="Phytozome:Glyma09g38410.1" /db_xref="TAIR:AT1G08450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I529" /translation="MARHAPNVALGLLLFSLLLRFSVSEIIFEERFEDGWQSRWVKSD WKRTEGKAGGFKHTAGKWSGDPDDKGIQTSGDAKHFAISAKIPEFTNKNRTLVLQYSL RFEQDIECGGGYIKLLSAFVNQKKFGGDTPYSLMFGPDICGTQTKKLHVILSYQGQNY PLKKELECETDKLTHFYTFILRPDASYSVLIDNRERDSGTMYTDWDILPPRKIKDLKA KKPADWDDREYIDDPNAKKPEGYDSIPKAIPDPKAEEPDNWDEEEDGIWKRPKIPNPK YKGPWKPKKIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVFD NVLICDDPEYVKQVVDEVFANRELEKEAFEEAEKVRKAQEEEEARRAREEGERRRKER GYDRRYRDRERYRDRYRRHPRDYLDDYHDEL" mobile_element 30567264..30568583 /note="source:CACAO_hAT_E3863_scaffold_9 1046 2475" /mobile_element_type="transposon:TIR/hAT" gene complement(30576636..30578527) /locus_tag="TCM_025086" /note="dbxref CacaoGD:Thecc1EG025086" mRNA complement(join(30576636..30577011,30578298..>30578514)) /locus_tag="TCM_025086" /product="Mitochondrial acyl carrier protein 2 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29929.m004551" /inference="similar to AA sequence:Phytozome:POPTR_0019s08300.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is medium, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc685t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14286t1" mRNA complement(join(30576677..30577060,30578298..30578527)) /locus_tag="TCM_025086" /product="Acyl carrier protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29929.m004551" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005799t1" /inference="similar to AA sequence:ricco:29929.m004551" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14286t1" CDS complement(join(30576829..30577011,30578298..>30578513)) /locus_tag="TCM_025086" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Mitochondrial acyl carrier protein 2 isoform 2" /protein_id="EOY09696.1" /db_xref="Phytozome:POPTR_0019s08300.1" /translation="AVRGALLKHLRVNATPLARNPNPTSHGLFALTFNAIRRRFCDEV KGSFLDKSEVTDRVISVVKNFQKVDPSKTLWRLSWPLKKNLGSRFLIMRQTRSAQSIL LLSSLLLTLRQSRWEITKLYSLYFVFTLFL" CDS complement(join(30576884..30577060,30578298..30578519)) /locus_tag="TCM_025086" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29929.m004551; paralog of Thecc1EG005799t1" /codon_start=1 /product="Acyl carrier protein isoform 1" /protein_id="EOY09695.1" /db_xref="TAIR:AT1G65290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SPM4" /translation="MAAVRGALLKHLRVNATPLARNPNPTSHGLFALTFNAIRRRFCD EVKGSFLDKSEVTDRVISVVKNFQKVDPSKVNPNAHFQNDLGLDSLDTVEVVMALEEE FGFEIPDNEADKISTINLAVEFIASHPQAK" mobile_element 30578911..30578959 /note="source:CACAO_M_E42809_F5_scaffold_5 6337 6388" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(30578964..30585478) /locus_tag="TCM_025087" /note="dbxref CacaoGD:Thecc1EG025087" mRNA complement(join(30578964..30579492,30580897..30580955, 30581986..30582135,30582291..30582407,30582927..30583148, 30585119..30585478)) /locus_tag="TCM_025087" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:29929.m004550" /inference="similar to AA sequence:Phytozome:POPTR_0013s08200.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:PASA:2:TSA:puevd3b024272t1a3; alternateUTRof:Thecc1EG025087t3; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc994t11" mRNA complement(join(30578964..30579492,30580897..30580955, 30581986..30582135,30582291..30582407,30582927..30583176, 30585119..30585478)) /locus_tag="TCM_025087" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:29929.m004550" /inference="similar to AA sequence:Phytozome:POPTR_0013s08200.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:PASA:2:TSA:puevd3b024272t1a2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc994t11" mRNA complement(join(30579055..30579492,30580897..30580955, 30581986..30582135,30582291..30582407,30582927..30583121, 30583311..30583334,30585119..30585147)) /locus_tag="TCM_025087" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29929.m004550" /inference="similar to AA sequence:Phytozome:POPTR_0013s08200.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc994t11; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc994t11; inference alignment:Newbler:10:TSA:cgbaB_g00753t00001" mRNA complement(join(30579168..30579492,30580897..30580955, 30581986..30582135,30582291..30582407,30582927..30583121, 30585119..30585436)) /locus_tag="TCM_025087" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29929.m004550" /inference="similar to AA sequence:Phytozome:POPTR_0013s08200.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00753t00001; inference alignment:Newbler:10:TSA:cgbaB_g00753t00001" CDS complement(join(30579357..30579492,30580897..30580955, 30581986..30582135,30582291..30582407,30582927..30583121, 30585119..30585289)) /locus_tag="TCM_025087" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY09697.1" /db_xref="Phytozome:POPTR_0013s08200.1" /db_xref="TAIR:AT2G43945.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N133" /translation="MSLPLPMRLLLPLTPTTRTPSYCSAFLSSPNPNFTFSSHSHHSC PLRRNPHSFSKQKWLSGHARRDQEMDGYRYEEENAVCLFSSDEDTGTQIPTQAQSIVE GSGAVMVSELKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVI TKNHIYTSGASGTNAAVIRGALRAEKPELLTVILPQSLKKQPPESQELLSKVKTVIEK PYNDHLPLIEASRLCNRDIISNVQQVICFAFHDSKLLMETCQEAKSLRKIVTLFYLD" CDS complement(join(30579357..30579492,30580897..30580955, 30581986..30582135,30582291..30582407,30582927..30583121, 30583311..30583316)) /locus_tag="TCM_025087" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY09698.1" /db_xref="Phytozome:POPTR_0013s08200.1" /db_xref="TAIR:AT2G43945.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N133" /translation="MNWLSGHARRDQEMDGYRYEEENAVCLFSSDEDTGTQIPTQAQS IVEGSGAVMVSELKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYA LVITKNHIYTSGASGTNAAVIRGALRAEKPELLTVILPQSLKKQPPESQELLSKVKTV IEKPYNDHLPLIEASRLCNRDIISNVQQVICFAFHDSKLLMETCQEAKSLRKIVTLFY LD" CDS complement(join(30579357..30579492,30580897..30580955, 30581986..30582135,30582291..30582407,30582927..30583088)) /locus_tag="TCM_025087" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY09699.1" /db_xref="Phytozome:POPTR_0013s08200.1" /db_xref="TAIR:AT2G43945.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N133" /translation="MDGYRYEEENAVCLFSSDEDTGTQIPTQAQSIVEGSGAVMVSEL KPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGA SGTNAAVIRGALRAEKPELLTVILPQSLKKQPPESQELLSKVKTVIEKPYNDHLPLIE ASRLCNRDIISNVQQVICFAFHDSKLLMETCQEAKSLRKIVTLFYLD" CDS complement(join(30579357..30579492,30580897..30580955, 30581986..30582135,30582291..30582407,30582927..30583088)) /locus_tag="TCM_025087" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY09700.1" /db_xref="Phytozome:POPTR_0013s08200.1" /db_xref="TAIR:AT2G43945.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N133" /translation="MDGYRYEEENAVCLFSSDEDTGTQIPTQAQSIVEGSGAVMVSEL KPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGA SGTNAAVIRGALRAEKPELLTVILPQSLKKQPPESQELLSKVKTVIEKPYNDHLPLIE ASRLCNRDIISNVQQVICFAFHDSKLLMETCQEAKSLRKIVTLFYLD" mobile_element complement(30585864..30586541) /note="source:MITE_Unknow_2_24 1 699" /mobile_element_type="transposon:TIR/MITE" mobile_element 30587531..30587607 /note="source:INTACT349_F203_scaffold_6-int 6695 6775" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30591106..30591468 /note="source:CACAO_MITE_S169_scaffold_7 25 391" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(30591470..30591480) /note="source:scaffold_1_CACTA_0008 9666 9680" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(30591481..30591589) /note="source:INTACT460_F49_scaffold_8-int 9181 9299" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(30591613..30591915) /note="source:INTACT711_F307_scaffold_9-int 1146 1448" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30595038..30596329 /note="source:INTACT1818F_F49_scaffold_11-int 3158 4408" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30596892..30597538 /note="source:INTACT1818F_F49_scaffold_11-int 5868 6490" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30598842..30598960 /note="source:INTACT1818F_F49_scaffold_11-int 19964 20073" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30599158..30602110 /note="source:CACAO_M_E69760_F9_scaffold_9 6701 9651" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30603848..30606567 /note="source:CACAO_M_E44096_F73_scaffold_5 1 2720" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(30608863..30608908) /note="source:CACAO_M_S_E5162_F13_scaffold_1 5326 5371" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30609513..30611542 /note="source:CACAO_M_E44098_F74_scaffold_5 1 2030" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30611643..30612198 /note="source:CACAO_M_E44098_F74_scaffold_5 2031 2586" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(30615891..30619337) /note="source:INTACT741_F17_scaffold_3-int 482 3929" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30617128..30619885 /note="source:INTACT785_F332_scaffold_2-int 9699 12448" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 30621075..30622147 /locus_tag="TCM_025091" /note="dbxref CacaoGD:Thecc1EG025091" mRNA join(30621075..30621209,30621738..30622147) /locus_tag="TCM_025091" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002286t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(30621189..30621209,30621738..30622109) /locus_tag="TCM_025091" /note="paralog of Thecc1EG002286t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09701.1" /translation="MGSRGVCIASTRTEQENVESLLYVSRHRWGFNAGINIYCKWSHL HVIREMLCQVNELENFKRTCFGHIMDVEAENSLFCTSFVHNLMLRRINKPDAKEVKIQ QVFDTFKGGQFQQGERISDSLHHCLNMR" mobile_element complement(30622111..30622475) /note="source:CACAO_Mutator_E1744_scaffold_8 6255 6618" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(30622485..30625569) /note="source:CACAO_Mutator_E1744_scaffold_8 2 2925" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(30626951..30630264) /note="source:INTACT135F_F90_scaffold_2-int 1 3263" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 30631680..30631884 /note="source:CACAO_on_E565_scaffold_5 932 1149" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(30631888..30632003) /note="source:CACAO_on_E565_scaffold_5 822 955" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 30633050..30635647 /note="source:CACAO_M_E44099_F53_scaffold_5 1 2598" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(30637138..30638136) /locus_tag="TCM_025095" /note="dbxref CacaoGD:Thecc1EG025095" mRNA complement(30637138..30638136) /locus_tag="TCM_025095" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is medium, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.49 coverage" CDS complement(30637351..30637644) /locus_tag="TCM_025095" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09702.1" /translation="MPMLRCNIPASLVRAPYQRETKGCFPCFGRQKELHYTGEQLKAI FRRFDSDGDGRLGKQDLRNAFNILCSRLPRYRAFAALRGADENGDGYVEIDGK" gene complement(30639114..30648843) /locus_tag="TCM_025096" /note="dbxref CacaoGD:Thecc1EG025096" mRNA complement(join(30639114..30639376,30639647..30639712, 30640253..30640336,30640720..30640821,30642705..30642803, 30643841..30643858,30644068..30644106,30645414..30645562, 30645675..30645773,30648470..30648503,30648590..30648645, 30648761..30648843)) /locus_tag="TCM_025096" /product="NAD(P)-binding Rossmann-fold superfamily protein" /inference="alignment:exonerate-protein:2:frave:gene21521" /inference="similar to AA sequence:Phytozome:GSVIVT01019056001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7264t1" CDS complement(join(30639290..30639376,30639647..30639712, 30640253..30640336,30640720..30640821,30642705..30642803, 30643841..30643858,30644068..30644106,30645414..30645562, 30645675..30645773,30648470..30648503,30648590..30648645, 30648761..30648842)) /locus_tag="TCM_025096" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein" /protein_id="EOY09703.1" /db_xref="Phytozome:GSVIVT01019056001" /db_xref="TAIR:AT3G03330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SRN7" /translation="MMLTVFFISLLLFLLLSALLFKFAISDGDFTLTSKRHVKREEIE DKVVWITGASRGIGEILAKQLASLGAKVILSARNEAELERVRKQLTGKYAPEQVKILP LDLTSGEDSLKEAVEKAESSFPGVGVDYMIHNAAYERPKTTALDVTEEGLKATFNVNM SSAAGKTPAPGQAVYSASKYALNGYFHTLRSELCQKGIKVTVVCPGPIETSNGSGATT SRTKFSSEKRLSAERCAELTIIAASHSLKEVWISYQPVLAVMYLVQYMPTIGFWLMDK VGGRRVEAAAEKGNTYSLSLLFGKKKAA" mobile_element 30650392..30650568 /note="source:scaffold_5_CACTA_0599 10808 10980" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(30651058..30651210) /note="source:CACAO_M_S_E31635_F14_scaffold_3 3183 3345" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30651122..30651230 /note="source:scaffold_6_CACTA_0712 1434 1544" /mobile_element_type="transposon:TIR/CACTA" gene complement(30651405..30653215) /locus_tag="TCM_025099" /note="dbxref CacaoGD:Thecc1EG025099" mRNA complement(30651405..30653215) /locus_tag="TCM_025099" /product="Phosphatase 2A regulatory B subunit family protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025100t1" /inference="similar to AA sequence:frave:gene07094" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(30651944..30653125) /locus_tag="TCM_025099" /note="dbxref frave:gene07094; paralog of Thecc1EG025100t1" /codon_start=1 /product="Phosphatase 2A regulatory B subunit family protein" /protein_id="EOY09704.1" /db_xref="TAIR:AT3G26020.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LVE2" /translation="MGENSWKGKRSIDKRKIKSSCRVTVFEKILLEINNFSQLCTYVS CAQRNLTKFSNVFFQESIDLVSSNLFRALPHSFTNAAVAIRFEESYYINRRNGVDDIP FQDPSWPHLELVYRFLSSLIKSPMTDPQLAAPCIKPSFILKLLDLFQSEDRRERGALV SVLQVIYRKFGVHRKLIRNSFFNVFYCCANEKHNAIPHLLLFLRSIVVEEEDDDDLGV QEEFRLFLVRGLIPLYKSKWLVLFYLHLNSCIQKFVEKDCKLADTVIQGMLRHWPTVD SAREYFFLDGVERVLEETQPDRFQLFMIPLFLRIANCLSSPHFKVAEKGFSLFNVHGN IQNLIKQYLDVILPIIFTDLEESAMNHWRHEIQKLAHDVSNSLMYIDPELYEECLMHL K" mobile_element 30654382..30654461 /note="source:CACAO_Again_on_S_E290_scaffold_10 1 79" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(30654383..30654571) /note="source:CACAO_Again_on_E175_scaffold_7 176 298" /mobile_element_type="transposon:TIR/hAT" gene complement(30655557..30657781) /locus_tag="TCM_025100" /note="dbxref CacaoGD:Thecc1EG025100" mRNA complement(join(30655557..30657037,30657581..30657781)) /locus_tag="TCM_025100" /product="Phosphatase 2A regulatory B subunit family protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025099t1" /inference="similar to AA sequence:frave:gene07095" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete" CDS complement(join(30656399..30657037,30657581..30657586)) /locus_tag="TCM_025100" /note="dbxref frave:gene07095; paralog of Thecc1EG025099t1" /codon_start=1 /product="Phosphatase 2A regulatory B subunit family protein" /protein_id="EOY09705.1" /db_xref="TAIR:AT3G21650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LVE2" /translation="MFKGKRSIDKRKIKSSCRVTVFEKILLEINRFSQFCTYVSCAQR NLTKFSNVFFRESIDLVSSSLFRALPHSSTNATVAIQFGEFYYINRRNGIDDIPFQDP SWPHLELVYRFFSSLLKSPMAYPQLAAPCIKPSFILKLFDLFQSEDRKERGALVSVLQ VIYRKFGVHRKLIRNSVFNVFYCCANEKHNGVPHLLLFLRSIVVEEEDDDDLRV" mobile_element 30658304..30658381 /note="source:CACAO_hAT_E1892_scaffold_4 1 75" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(30658305..30658600) /note="source:CACAO_Again_on_E175_scaffold_7 80 298" /mobile_element_type="transposon:TIR/hAT" gene 30659778..30666780 /locus_tag="TCM_025101" /note="dbxref CacaoGD:Thecc1EG025101" mRNA join(30659778..30660242,30660838..30661122, 30661661..30662221,30662328..30663713,30663808..30664132, 30664298..30664559,30664650..30664866,30665007..30665383, 30665625..30665762,30665853..30666780) /locus_tag="TCM_025101" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400041664" /inference="similar to AA sequence:Phytozome:POPTR_0017s01910.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1537t2" CDS join(30660997..30661122,30661661..30662221, 30662328..30663713,30663808..30664132,30664298..30664559, 30664650..30664866,30665007..30665383,30665625..30665762, 30665853..30665916) /locus_tag="TCM_025101" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative" /protein_id="EOY09706.1" /db_xref="Phytozome:POPTR_0017s01910.1" /db_xref="TAIR:AT1G65810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H6H0" /translation="MDKSGSGCGSKKENTDKGRSLIDLVFSWSFGDALNESLYKGQVK KIPETFKSSSEYLHSFVAPLIEETHADLLSGMKRVSQAPSRQLDSVTRDKRYKPPKDL IYKIVLKRDSKKSDLATYQPQSGDLVTLTDVRPKCTSDLNRSKMSYLLAYVQGVKEDP DELFIRSSKPIMIEEDMQRKENISQQKPTFFFVFLINMTTNIRIWKALHPDPKGGNLN MINKVVQMNGADEEDCPMCLSEKKSGTVLPFNSKGLNDSQEAAIISCINTQACHHQNT VKLVWGPPGTGKTRTVGSLLFALLRMKCGAITCAPTNIAVVEVASRLMSLVKGTLKYD TYGFGDIVLFGNGKRMKIDDHEDLLDVFLDYRVEILDKCFSPYCGWRTSLVSMIDFLE DPERQYSQYLANRELENQKTEEENCDENLKGKDSTNHKLEGKNCDVNLKNKKSKNSWR KVINETLKQKETKKKHVASKTENRLKPDEKQGTHGAFLEKKNAQEAGAETCKEDPITL QEFIKKRFCVFYERLKFCVVNLYTHLPTHLVSLELVKTMMIALDLLGSLETLLNRPKS DKGLKIALNDTETESEIGHFAKLRVARKHCLQRLKSLPLSFPVPEFSEKIIIKNFCLD NACLLFCTASSSFKLNPKRTVPLELLVIDEAAQLRECESTIPFQLPGLRHAVLIGDEH QLPAMTQSKSSGQAEFARSLFERLVLLGQKKQLLNVQYRMHPAISSFPNKEFYDGKIL DAPNVKDRSHEKHFLHGSMYGTYSFINVTCGKEQFDHLHSRKNMVEVAVVCKLVANLF KEFTGTRQRVCIGVISPYKAQVHAIQEKLENKYSECADSGFTVSVRSVDGFQGGEEDV IIISTVRCNINGSIGFLSNHQRANVALTRARHCLWILGNEATFIKSGSVWKKLVTDAR RRGCFYDADEDKHLAQAITTALFELKQFDSLMSMDSPLFKEAKWRVCLSNDFKKSVAS IKNPELLKQILNLLEKLSSGWRQTPEQKNHRKNKQIAVGGSSGLLEVYPVNGSLNLLW SVDVIKENSHFIQILTVWDMLPSLDLPKVAKNLEALFGKYTVNKMIHCKCKCLEGNLV VPMRWPMKDCLMQSVGREDDIMSRSFASLSLANKSSASHADSKVRSRGKWRLKQLDCS QNRDQ" gene complement(30672449..30673043) /locus_tag="TCM_025103" /note="dbxref CacaoGD:Thecc1EG025103" mRNA complement(join(30672449..30672856,30672935..30673043)) /locus_tag="TCM_025103" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g17880t00001" CDS complement(join(30672701..30672856,30672935..30672961)) /locus_tag="TCM_025103" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09707.1" /translation="MLENNVFHKVRETKWACAHTRLGQTVKNFRFPPLCASIHVGCAQ STFCTLTLFFLNFFNL" mobile_element 30673071..30673420 /note="source:CACAO_M_E44100_F145_scaffold_5 1 350" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(30679568..30689166) /locus_tag="TCM_025105" /note="dbxref CacaoGD:Thecc1EG025105" mRNA complement(join(30679568..30680396,30680919..30680953, 30681045..30681317,30682109..30682295,30683939..30684154, 30685539..30685742,30686576..30686796,30687679..30687774, 30687994..30688065,30688641..30689166)) /locus_tag="TCM_025105" /product="High chlorophyll fluorescent 109 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29929.m004546" /inference="similar to AA sequence:ricco:29929.m004546" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05657t00001" CDS complement(join(30680274..30680396,30680919..30680953, 30681045..30681317,30682109..30682295,30683939..30684154, 30685539..30685742,30686576..30686796,30687679..30687774, 30687994..30688065,30688641..30688827)) /locus_tag="TCM_025105" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29929.m004546" /codon_start=1 /product="High chlorophyll fluorescent 109 isoform 1" /protein_id="EOY09708.1" /db_xref="TAIR:AT5G36170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2CY12" /translation="MEAILKPLLSSTTMIKPPKPSSFSSYTSINKVPVLLSLAPLLTA TSFSFTAILSAPSRFTSSVIYATPESQLTEGVDTNTREWVMQGSEAVGMLPWFYGHYH CFEVVGFNANKVLDFVDFYALRKDVETASERVEEIIASTGLQLLEKELADLESKAADS SFWDDRAKAQETLLALTDVKDKINLLNEFKTKVEDAETIVKLTEEMDAIDAALLEEAV SVIKELNKALDRFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEK QKYKTKVVEKSLGEEAGLKSATIEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTS FAGVEVMPLLPEESVDVELPEEDLEITFSRAGGKGGQNVNKVETAVRITHIPTGVTVR CTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPY KLVKDVRTGFETSDIASVMDGELDAFIKAYLKHKYSSDSLDKTGTSKRYRPSQACHRM LPLSSARSSDASSKAHQHTSQVDDRAYAP" mRNA complement(join(30680430..30681317,30682109..30682295, 30683939..30684154,30685539..30685742,30686576..30686796, 30687994..30688065,30688641..30689039)) /locus_tag="TCM_025105" /product="High chlorophyll fluorescent 109 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29929.m004546" /inference="similar to AA sequence:ricco:29929.m004546" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc751t9; inference alignment:Newbler:10:TSA:cgbaB_g05657t00001" CDS complement(join(30681007..30681317,30682109..30682295, 30683939..30684154,30685539..30685742,30686576..30686796, 30687994..30688065,30688641..30688827)) /locus_tag="TCM_025105" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29929.m004546" /codon_start=1 /product="High chlorophyll fluorescent 109 isoform 2" /protein_id="EOY09709.1" /db_xref="TAIR:AT5G36170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2CY12" /translation="MEAILKPLLSSTTMIKPPKPSSFSSYTSINKVPVLLSLAPLLTA TSFSFTAILSAPSRFTSSVIYATPESQLTEGVDTNTREWVMQDFYALRKDVETASERV EEIIASTGLQLLEKELADLESKAADSSFWDDRAKAQETLLALTDVKDKINLLNEFKTK VEDAETIVKLTEEMDAIDAALLEEAVSVIKELNKALDRFELTQLLSGPYDKEGAVISI TAGAGGTDAQDWADMLLRMYVRWGEKQKYKTKVVEKSLGEEAGLKSATIEVEGRYAYG YLSGEKGTHRIVRQSPFNAKGLRQTSFAGVEVMPLLPEESVDVELPEEDLEITFSRAG GKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRAS EIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDIASVMDGELDAFIKAYLK HKYSMSVSATTTGAN" mobile_element 30685271..30685361 /note="source:MITE_Tourist_4 263 353" /mobile_element_type="transposon:TIR/MITE" gene complement(30689680..30703960) /locus_tag="TCM_025106" /note="dbxref CacaoGD:Thecc1EG025106" mRNA complement(join(30689680..30690276,30690894..30691172, 30691394..30691804,30691995..30692204,30692767..30692963, 30693248..30693351,30693449..30693861,30693984..30694255, 30694383..30694609,30694753..30694971,30695227..30695387, 30695469..30695664,30696249..30696348,30696439..30696568, 30696652..30696780,30697751..30697885,30699919..30699983, 30700074..30700158,30700941..30701075,30702133..30702246, 30702627..30702656)) /locus_tag="TCM_025106" /product="Dicer-like protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29929.m004545" /inference="similar to AA sequence:ricco:29929.m004545" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc506t4; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc506t4; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc430t15" mRNA complement(join(30689680..30690276,30690894..30691172, 30691394..30691804,30691995..30692204,30692767..30692963, 30693248..30693351,30693770..30693861,30693984..30694255, 30694383..30694609,30694753..30694971,30695227..30695387, 30695469..30695664,30696249..30696348,30696439..30696568, 30696652..30696780,30697745..30697885,30699919..30699983, 30700074..30700158,30700941..30701075,30702133..30702246, 30702627..30702656)) /locus_tag="TCM_025106" /product="Dicer-like protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:29929.m004545" /inference="similar to AA sequence:ricco:29929.m004545" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc506t3; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc506t4; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc430t15" mRNA complement(join(30689680..30690276,30690894..30691172, 30691394..30691804,30691995..30692204,30692767..30692963, 30693248..30693351,30693770..30693861,30693984..30694255, 30694383..30694609,30694753..30694971,30695227..30695387, 30695469..30695664,30696249..30696348,30696439..30696568, 30696652..30696780,30697751..30697885,30699919..30699942)) /locus_tag="TCM_025106" /product="Dicer-like protein isoform 5" /inference="alignment:exonerate- protein:2:ricco:29929.m004545" /inference="similar to AA sequence:ricco:29929.m004545" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc511t2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc506t4; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc430t15" mRNA complement(join(30689715..30690276,30690894..30691172, 30691394..30691804,30691995..30692204,30692767..30692963, 30693248..30693351,30693449..30693861,30693984..30694255, 30694383..30694609,30694753..30694971,30695227..30695387, 30695469..30695664,30696249..30696348,30696439..30696568, 30696652..30696780,30696870..30697125)) /locus_tag="TCM_025106" /product="Dicer-like protein isoform 6" /inference="alignment:exonerate- protein:2:ricco:29929.m004545" /inference="similar to AA sequence:ricco:29929.m004545" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7342t2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc506t4; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc430t15" mRNA complement(join(30689826..30690276,30690894..30691172, 30691394..30691804,30691995..30692204,30692767..30692963, 30693248..30693351,30693449..30693861,30693984..30694255, 30694383..30694609,30694753..30694971,30695227..30695387, 30695469..30695664,30696249..30696348,30696439..30696568, 30696652..30696810,30697745..30697915,30699919..30699983, 30700074..30700158,30700941..30701075,30702133..30702246, 30702627..30702804,30702954..30703064,30703366..30703960)) /locus_tag="TCM_025106" /product="Dicer-like protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29929.m004545" /inference="similar to AA sequence:ricco:29929.m004545" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc506t4" CDS complement(join(30689917..30690276,30690894..30691172, 30691394..30691804,30691995..30692204,30692767..30692963, 30693248..30693351,30693449..30693861,30693984..30694255, 30694383..30694609,30694753..30694971,30695227..30695387, 30695469..30695664,30696249..30696348,30696439..30696568, 30696652..30696810,30697745..30697915,30699919..30699983, 30700074..30700158,30700941..30701075,30702133..30702246, 30702627..30702804,30702954..30703024)) /locus_tag="TCM_025106" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29929.m004545" /codon_start=1 /product="Dicer-like protein isoform 1" /protein_id="EOY09710.1" /db_xref="TAIR:AT3G03300.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHX6" /translation="MEPVDMEMDITQELSADSLPFARSYQLEALEKAIKQNTITYLET GSGKTLIAIMLLRSYGHLLRKPSPFCAVFLVPQVVLVKQQADAVEMHTDLNVGKYWGE MDVDFWDAAKWKQEIEKYEVLVMTPQILLNGLRHSFFKINMIKVLIIDECHHARGKHP YACIMTEFYHHKLEAGVSDLPRIFGMTASPIKSKAASPVDSYWQKIHELETIMNSKCL HSMFSPLKVYTCISESVLAQFVPFSTPKFKFYEHMEIPYVLYARLVEELNVLKVKDTD SRCTAFQHECSLEILDLEASATESTRKKMSKIHSALVHCLDELGVWLALKAAEYLSCY ESDFLLGGKLGVVGEKIVKNYSLVACQLFETRIPSGPDWTIANNVKASVDAGLLTTKV FCLIESLFEYRELKDIRCIIFVERVMTAIVLQSLLSELLRKHNSWKTKYIAGNNSGLH SQTRKKQNEIVEEFRKGMVNIIVATSILEEGLDVQSCNLVIRFDPSATVCSFIQSRGR ARMQNSDYLLLVKSGDFFTHSRLKNYLASGDIMRKESLCHASHACSPLRNHLYDEEVY RFASTGACVTLSSSVGLIHFYCSRLPADGYFKPTPRCVIDKEKGVCTLYLPKSCPIQT VCVQGNIKTLKQKACFEACKQLHEIGALTDNLVPDIVAEEADAGEIGREPYNDDQPIF FPPELVNQCEHEDMKKYYCYLIELKQNFDYEFPVHNIMLLVRSQLEIDNKSMGFELEV DRGFLTVNLKYVGLIRLDPSQVILSKRFQIAVFRVLMDHKVEKLTEVLGDPRSGNNSD IDYLLLPSTYLGQNPVIDWPSVCSVLFSYENVWKDHVCNAGMIQTKSGLLCACMIENS LVCTPHNGHAYIVKGFLKNLTANSLLKLRNGSVMTYMEYYELRHGIQLRFSQVSFLDA RHVFPVHNYLHRCKRQKEKESSNAFVELPPELCDVIMSPISISTFYSFTFIPSIMYRL ESLLLATNLKKMQQDHCVQNVTIPTMKVLEAITTKKCQENFHLESLETLGDSFLKYAV CQQLFKTHQNQHEGLLSIRKEKIISNTALCMLGCDKKLPGFIRNEPFDVKSWIIPGYN SGSYALNEETLCSTRKIYVSGRRKLKNKKVADVVEALIGAYLSVGGEAAGVLFLNWIG INVDFTNIPYQRQFKVHAEKLVNVRVLESLLNYSFQDPSLLVEALTHGSYMLAEIPEC YQRMEFLGDSVLDYLITVHLYSKYPRMSPGLLTDLRSASVNNDCYALSAVKAGLHKYI LHASQKLHKEIAETVESFKELSMKYTFGWECDKSFPKVLADIIESLAGAIFVDSGYDK HAVFRSIRPLLEPLITPETIKFHPVKELNELCQKEHFEQRPATVSHDNGVTSITTEVE ANGMVFKHTSSASNKKMARKLACKEVLKSLKASLGGPKFV" CDS complement(join(30689917..30690276,30690894..30691172, 30691394..30691804,30691995..30692204,30692767..30692963, 30693248..30693351,30693449..30693861,30693984..30694255, 30694383..30694609,30694753..30694971,30695227..30695387, 30695469..30695664,30696249..30696348,30696439..30696568, 30696652..30696780,30697751..30697885,30699919..30699983, 30700074..30700158,30700941..30701075,30702133..30702228)) /locus_tag="TCM_025106" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29929.m004545" /codon_start=1 /product="Dicer-like protein isoform 2" /protein_id="EOY09711.1" /db_xref="TAIR:AT3G03300.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHX6" /translation="MHTDLNVGKYWGEMDVDFWDAAKWKQEIEKYEVLVMTPQILLNG LRHSFFKINMIKVLIIDECHHARGKHPYACIMTEFYHHKLEAGVSDLPRIFGMTASPI KSKAASPVDSYWQKIHELETIMNSKVYTCISESVLAQFVPFSTPKFKFYEHMEIPYVL YARLVEELNVLKHECSLEILDLEASATESTRKKMSKIHSALVHCLDELGVWLALKAAE YLSCYESDFLLGGKLGVVGEKIVKNYSLVACQLFETRIPSGPDWTIANNVKASVDAGL LTTKVFCLIESLFEYRELKDIRCIIFVERVMTAIVLQSLLSELLRKHNSWKTKYIAGN NSGLHSQTRKKQNEIVEEFRKGMVNIIVATSILEEGLDVQSCNLVIRFDPSATVCSFI QSRGRARMQNSDYLLLVKSGDFFTHSRLKNYLASGDIMRKESLCHASHACSPLRNHLY DEEVYRFASTGACVTLSSSVGLIHFYCSRLPADGYFKPTPRCVIDKEKGVCTLYLPKS CPIQTVCVQGNIKTLKQKACFEACKQLHEIGALTDNLVPDIVAEEADAGEIGREPYND DQPIFFPPELVNQCEHEDMKKYYCYLIELKQNFDYEFPVHNIMLLVRSQLEIDNKSMG FELEVDRGFLTVNLKYVGLIRLDPSQVILSKRFQIAVFRVLMDHKVEKLTEVLGDPRS GNNSDIDYLLLPSTYLGQNPVIDWPSVCSVLFSYENVWKDHVCNAGMIQTKSGLLCAC MIENSLVCTPHNGHAYIVKGFLKNLTANSLLKLRNGSVMTYMEYYELRHGIQLRFSQV SFLDARHVFPVHNYLHRCKRQKEKESSNAFVELPPELCDVIMSPISISTFYSFTFIPS IMYRLESLLLATNLKKMQQDHCVQNVTIPTMKVLEAITTKKCQENFHLESLETLGDSF LKYAVCQQLFKTHQNQHEGLLSIRKEKIISNTALCMLGCDKKLPGFIRNEPFDVKSWI IPGYNSGSYALNEETLCSTRKIYVSGRRKLKNKKVADVVEALIGAYLSVGGEAAGVLF LNWIGINVDFTNIPYQRQFKVHAEKLVNVRVLESLLNYSFQDPSLLVEALTHGSYMLA EIPECYQRMEFLGDSVLDYLITVHLYSKYPRMSPGLLTDLRSASVNNDCYALSAVKAG LHKYILHASQKLHKEIAETVESFKELSMKYTFGWECDKSFPKVLADIIESLAGAIFVD SGYDKHAVFRSIRPLLEPLITPETIKFHPVKELNELCQKEHFEQRPATVSHDNGVTSI TTEVEANGMVFKHTSSASNKKMARKLACKEVLKSLKASLGGPKFV" CDS complement(join(30689917..30690276,30690894..30691172, 30691394..30691804,30691995..30692204,30692767..30692963, 30693248..30693351,30693770..30693861,30693984..30694255, 30694383..30694609,30694753..30694971,30695227..30695387, 30695469..30695664,30696249..30696348,30696439..30696568, 30696652..30696780,30697745..30697885,30699919..30699983, 30700074..30700158,30700941..30701075,30702133..30702228)) /locus_tag="TCM_025106" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29929.m004545" /codon_start=1 /product="Dicer-like protein isoform 3" /protein_id="EOY09712.1" /db_xref="TAIR:AT3G03300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHX6" /translation="MHTDLNVGKYWGEMDVDFWDAAKWKQEIEKYEVLVMTPQILLNG LRHSFFKINMIKVLIIDECHHARGKHPYACIMTEFYHHKLEAGVSDLPRIFGMTASPI KSKAASPVDSYWQKIHELETIMNSKVYTCISESVLAQFVPFSTPKFKFYEHMEIPYVL YARLVEELNVLKVKHECSLEILDLEASATESTRKKMSKIHSALVHCLDELGVWLALKA AEYLSCYESDFLLGGKLGVVGEKIVKNYSLVACQLFETRIPSGPDWTIANNVKASVDA GLLTTKVFCLIESLFEYRELKDIRCIIFVERVMTAIVLQSLLSELLRKHNSWKTKYIA GNNSGLHSQTRKKQNEIVEEFRKGMVNIIVATSILEEGLDVQSCNLVIRFDPSATVCS FIQSRGRARMQNSDYLLLVKSGDFFTHSRLKNYLASGDIMRKESLCHASHACSPLRNH LYDEEVYRFASTGACVTLSSSVGLIHFYCSRLPADGYFKPTPRCVIDKEKGVCTLYLP KSCPIQTVCVQGNIKTLKQKACFEACKQLHEIGALTDNLVPDIVAEEADAGEIGREPY NDDQPIFFPPELVNQCEHEDMKKYYCYLIELKQNFDYEFPVHNIMLLVRSQLEIDNKS MGFELEVDRGFLTVNLKYVGLIRLDPSQVILSKRFQIAVFRVLMDHKVEKLTEVLGDP SHGIQLRFSQVSFLDARHVFPVHNYLHRCKRQKEKESSNAFVELPPELCDVIMSPISI STFYSFTFIPSIMYRLESLLLATNLKKMQQDHCVQNVTIPTMKVLEAITTKKCQENFH LESLETLGDSFLKYAVCQQLFKTHQNQHEGLLSIRKEKIISNTALCMLGCDKKLPGFI RNEPFDVKSWIIPGYNSGSYALNEETLCSTRKIYVSGRRKLKNKKVADVVEALIGAYL SVGGEAAGVLFLNWIGINVDFTNIPYQRQFKVHAEKLVNVRVLESLLNYSFQDPSLLV EALTHGSYMLAEIPECYQRMEFLGDSVLDYLITVHLYSKYPRMSPGLLTDLRSASVNN DCYALSAVKAGLHKYILHASQKLHKEIAETVESFKELSMKYTFGWECDKSFPKVLADI IESLAGAIFVDSGYDKHAVFRSIRPLLEPLITPETIKFHPVKELNELCQKEHFEQRPA TVSHDNGVTSITTEVEANGMVFKHTSSASNKKMARKLACKEVLKSLKASLGGPKFV" CDS complement(join(30689917..30690276,30690894..30691172, 30691394..30691804,30691995..30692204,30692767..30692963, 30693248..30693351,30693770..30693861,30693984..30694255, 30694383..30694609,30694753..30694971,30695227..30695387, 30695469..30695664,30696249..30696348,30696439..30696568, 30696652..30696780,30697751..30697885,30699919..30699930)) /locus_tag="TCM_025106" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:29929.m004545" /codon_start=1 /product="Dicer-like protein isoform 5" /protein_id="EOY09714.1" /db_xref="TAIR:AT3G03300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHX6" /translation="MNSKVYTCISESVLAQFVPFSTPKFKFYEHMEIPYVLYARLVEE LNVLKHECSLEILDLEASATESTRKKMSKIHSALVHCLDELGVWLALKAAEYLSCYES DFLLGGKLGVVGEKIVKNYSLVACQLFETRIPSGPDWTIANNVKASVDAGLLTTKVFC LIESLFEYRELKDIRCIIFVERVMTAIVLQSLLSELLRKHNSWKTKYIAGNNSGLHSQ TRKKQNEIVEEFRKGMVNIIVATSILEEGLDVQSCNLVIRFDPSATVCSFIQSRGRAR MQNSDYLLLVKSGDFFTHSRLKNYLASGDIMRKESLCHASHACSPLRNHLYDEEVYRF ASTGACVTLSSSVGLIHFYCSRLPADGYFKPTPRCVIDKEKGVCTLYLPKSCPIQTVC VQGNIKTLKQKACFEACKQLHEIGALTDNLVPDIVAEEADAGEIGREPYNDDQPIFFP PELVNQCEHEDMKKYYCYLIELKQNFDYEFPVHNIMLLVRSQLEIDNKSMGFELEVDR GFLTVNLKYVGLIRLDPSQVILSKRFQIAVFRVLMDHKVEKLTEVLGDPSHGIQLRFS QVSFLDARHVFPVHNYLHRCKRQKEKESSNAFVELPPELCDVIMSPISISTFYSFTFI PSIMYRLESLLLATNLKKMQQDHCVQNVTIPTMKVLEAITTKKCQENFHLESLETLGD SFLKYAVCQQLFKTHQNQHEGLLSIRKEKIISNTALCMLGCDKKLPGFIRNEPFDVKS WIIPGYNSGSYALNEETLCSTRKIYVSGRRKLKNKKVADVVEALIGAYLSVGGEAAGV LFLNWIGINVDFTNIPYQRQFKVHAEKLVNVRVLESLLNYSFQDPSLLVEALTHGSYM LAEIPECYQRMEFLGDSVLDYLITVHLYSKYPRMSPGLLTDLRSASVNNDCYALSAVK AGLHKYILHASQKLHKEIAETVESFKELSMKYTFGWECDKSFPKVLADIIESLAGAIF VDSGYDKHAVFRSIRPLLEPLITPETIKFHPVKELNELCQKEHFEQRPATVSHDNGVT SITTEVEANGMVFKHTSSASNKKMARKLACKEVLKSLKASLGGPKFV" CDS complement(join(30689917..30690276,30690894..30691172, 30691394..30691804,30691995..30692204,30692767..30692963, 30693248..30693351,30693449..30693861,30693984..30694255, 30694383..30694609,30694753..30694971,30695227..30695387, 30695469..30695664,30696249..30696348,30696439..30696568, 30696652..30696717)) /locus_tag="TCM_025106" /note="encoded by transcript variant 6; alternatively spliced; dbxref ricco:29929.m004545" /codon_start=1 /product="Dicer-like protein isoform 6" /protein_id="EOY09715.1" /db_xref="TAIR:AT3G03300.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHX6" /translation="MSKIHSALVHCLDELGVWLALKAAEYLSCYESDFLLGGKLGVVG EKIVKNYSLVACQLFETRIPSGPDWTIANNVKASVDAGLLTTKVFCLIESLFEYRELK DIRCIIFVERVMTAIVLQSLLSELLRKHNSWKTKYIAGNNSGLHSQTRKKQNEIVEEF RKGMVNIIVATSILEEGLDVQSCNLVIRFDPSATVCSFIQSRGRARMQNSDYLLLVKS GDFFTHSRLKNYLASGDIMRKESLCHASHACSPLRNHLYDEEVYRFASTGACVTLSSS VGLIHFYCSRLPADGYFKPTPRCVIDKEKGVCTLYLPKSCPIQTVCVQGNIKTLKQKA CFEACKQLHEIGALTDNLVPDIVAEEADAGEIGREPYNDDQPIFFPPELVNQCEHEDM KKYYCYLIELKQNFDYEFPVHNIMLLVRSQLEIDNKSMGFELEVDRGFLTVNLKYVGL IRLDPSQVILSKRFQIAVFRVLMDHKVEKLTEVLGDPRSGNNSDIDYLLLPSTYLGQN PVIDWPSVCSVLFSYENVWKDHVCNAGMIQTKSGLLCACMIENSLVCTPHNGHAYIVK GFLKNLTANSLLKLRNGSVMTYMEYYELRHGIQLRFSQVSFLDARHVFPVHNYLHRCK RQKEKESSNAFVELPPELCDVIMSPISISTFYSFTFIPSIMYRLESLLLATNLKKMQQ DHCVQNVTIPTMKVLEAITTKKCQENFHLESLETLGDSFLKYAVCQQLFKTHQNQHEG LLSIRKEKIISNTALCMLGCDKKLPGFIRNEPFDVKSWIIPGYNSGSYALNEETLCST RKIYVSGRRKLKNKKVADVVEALIGAYLSVGGEAAGVLFLNWIGINVDFTNIPYQRQF KVHAEKLVNVRVLESLLNYSFQDPSLLVEALTHGSYMLAEIPECYQRMEFLGDSVLDY LITVHLYSKYPRMSPGLLTDLRSASVNNDCYALSAVKAGLHKYILHASQKLHKEIAET VESFKELSMKYTFGWECDKSFPKVLADIIESLAGAIFVDSGYDKHAVFRSIRPLLEPL ITPETIKFHPVKELNELCQKEHFEQRPATVSHDNGVTSITTEVEANGMVFKHTSSASN KKMARKLACKEVLKSLKASLGGPKFV" mRNA complement(join(<30690098..30690276,30690894..30691172, 30691394..30691804,30691995..30692204,30692767..30692963, 30693248..30693351,30693770..30693861,30693984..30694255, 30694383..30694609,30694753..30694971,30695227..30695387, 30695469..30695664,30696249..30696348,30696439..30696568, 30696652..30696780,30696870..30697434)) /locus_tag="TCM_025106" /product="Dicer-like protein isoform 7" /inference="alignment:exonerate- protein:2:ricco:29929.m004545" /inference="similar to AA sequence:ricco:29929.m004545" /note="transcript variant 7; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc516t1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc506t4; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc430t15" CDS complement(join(<30690100..30690276,30690894..30691172, 30691394..30691804,30691995..30692204,30692767..30692963, 30693248..30693351,30693770..30693861,30693984..30694255, 30694383..30694609,30694753..30694971,30695227..30695387, 30695469..30695664,30696249..30696348,30696439..30696568, 30696652..30696717)) /locus_tag="TCM_025106" /note="encoded by transcript variant 7; alternatively spliced; dbxref ricco:29929.m004545" /codon_start=1 /product="Dicer-like protein isoform 7" /protein_id="EOY09716.1" /db_xref="TAIR:AT3G03300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHX6" /translation="MSKIHSALVHCLDELGVWLALKAAEYLSCYESDFLLGGKLGVVG EKIVKNYSLVACQLFETRIPSGPDWTIANNVKASVDAGLLTTKVFCLIESLFEYRELK DIRCIIFVERVMTAIVLQSLLSELLRKHNSWKTKYIAGNNSGLHSQTRKKQNEIVEEF RKGMVNIIVATSILEEGLDVQSCNLVIRFDPSATVCSFIQSRGRARMQNSDYLLLVKS GDFFTHSRLKNYLASGDIMRKESLCHASHACSPLRNHLYDEEVYRFASTGACVTLSSS VGLIHFYCSRLPADGYFKPTPRCVIDKEKGVCTLYLPKSCPIQTVCVQGNIKTLKQKA CFEACKQLHEIGALTDNLVPDIVAEEADAGEIGREPYNDDQPIFFPPELVNQCEHEDM KKYYCYLIELKQNFDYEFPVHNIMLLVRSQLEIDNKSMGFELEVDRGFLTVNLKYVGL IRLDPSQVILSKRFQIAVFRVLMDHKVEKLTEVLGDPSHGIQLRFSQVSFLDARHVFP VHNYLHRCKRQKEKESSNAFVELPPELCDVIMSPISISTFYSFTFIPSIMYRLESLLL ATNLKKMQQDHCVQNVTIPTMKVLEAITTKKCQENFHLESLETLGDSFLKYAVCQQLF KTHQNQHEGLLSIRKEKIISNTALCMLGCDKKLPGFIRNEPFDVKSWIIPGYNSGSYA LNEETLCSTRKIYVSGRRKLKNKKVADVVEALIGAYLSVGGEAAGVLFLNWIGINVDF TNIPYQRQFKVHAEKLVNVRVLESLLNYSFQDPSLLVEALTHGSYMLAEIPECYQRME FLGDSVLDYLITVHLYSKYPRMSPGLLTDLRSASVNNDCYALSAVKAGLHKYILHASQ KLHKEIAETVESFKELSMKYTFGWECDKSFPKVLADIIESLAGAIFVDSGYDKHAVFR SIRPLLEPLITPETIKFHPVKELNELCQKEHFE" mRNA complement(join(<30692181..30692204,30692767..30692963, 30693248..30693351,30693449..30693861,30693984..30694255, 30694383..30694609,30694753..30694971,30695227..30695387, 30695469..30695664,30696249..30696348,30696439..30696568, 30696652..30696780,30697751..30697885,30699919..30699983, 30700074..30700158,30700941..30701075,30702133..30702246, 30702627..30702804,30702954..>30702979)) /locus_tag="TCM_025106" /product="Dicer-like protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:29929.m004545" /inference="similar to AA sequence:ricco:29929.m004545" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc430t15; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc430t15; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc506t4" CDS complement(join(<30692181..30692204,30692767..30692963, 30693248..30693351,30693449..30693861,30693984..30694255, 30694383..30694609,30694753..30694971,30695227..30695387, 30695469..30695664,30696249..30696348,30696439..30696568, 30696652..30696780,30697751..30697885,30699919..30699983, 30700074..30700158,30700941..30701075,30702133..30702246, 30702627..30702804,30702954..>30702979)) /locus_tag="TCM_025106" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29929.m004545" /codon_start=1 /product="Dicer-like protein isoform 4" /protein_id="EOY09713.1" /db_xref="TAIR:AT3G03300.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHX6" /translation="ADSLPFARSYQLEALEKAIKQNTITYLETGSGKTLIAIMLLRSY GHLLRKPSPFCAVFLVPQVVLVKQQADAVEMHTDLNVGKYWGEMDVDFWDAAKWKQEI EKYEVLVMTPQILLNGLRHSFFKINMIKVLIIDECHHARGKHPYACIMTEFYHHKLEA GVSDLPRIFGMTASPIKSKAASPVDSYWQKIHELETIMNSKVYTCISESVLAQFVPFS TPKFKFYEHMEIPYVLYARLVEELNVLKHECSLEILDLEASATESTRKKMSKIHSALV HCLDELGVWLALKAAEYLSCYESDFLLGGKLGVVGEKIVKNYSLVACQLFETRIPSGP DWTIANNVKASVDAGLLTTKVFCLIESLFEYRELKDIRCIIFVERVMTAIVLQSLLSE LLRKHNSWKTKYIAGNNSGLHSQTRKKQNEIVEEFRKGMVNIIVATSILEEGLDVQSC NLVIRFDPSATVCSFIQSRGRARMQNSDYLLLVKSGDFFTHSRLKNYLASGDIMRKES LCHASHACSPLRNHLYDEEVYRFASTGACVTLSSSVGLIHFYCSRLPADGYFKPTPRC VIDKEKGVCTLYLPKSCPIQTVCVQGNIKTLKQKACFEACKQLHEIGALTDNLVPDIV AEEADAGEIGREPYNDDQPIFFPPELVNQCEHEDMKKYYCYLIELKQNFDYEFPVHNI MLLVRSQLEIDNKSMGFELEVDRGFLTVNLKYVGLIRLDPSQVILSKRFQIAVFRVLM DHKVEKLTEVLGDPRSGNNSDIDYLLLPSTYLGQNPVIDWPSVCSVLFSYENVWKDHV CNAGMIQTKSGLLCACMIENSLVCTPHNGHAYIVKGFLKNLTANSLLKLRNGSVMTYM EYYELRHGIQLRFSQVSFLDARHVFPVHNYLHRCKRQKEKESSNAFVELPPELCDVIM SPISISTFYSFTFIPSIMYRLESLLLATNLKKMQQDHCVQNVTIPTMKVLEAITTK" mobile_element 30701938..30702027 /note="source:scaffold_4_CACTA_0510 5782 5874" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(30704335..30704427) /note="source:scaffold_9_CACTA_0936 328 420" /mobile_element_type="transposon:TIR/CACTA" mobile_element 30705146..30705405 /note="source:scaffold_5_CACTA_0610 5089 5323" /mobile_element_type="transposon:TIR/CACTA" mobile_element 30707170..30707991 /note="source:CACAO_Again_on_S_E199_scaffold_6 1 827" /mobile_element_type="transposon:TIR/hAT" gene 30708838..30715259 /locus_tag="TCM_025108" /note="dbxref CacaoGD:Thecc1EG025108" mRNA join(30708838..30709188,30709288..30709895, 30710364..30710781,30714979..30715259) /locus_tag="TCM_025108" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(30709112..30709188,30709288..30709895, 30710364..30710767) /locus_tag="TCM_025108" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09717.1" /translation="METLLKHYWDIFEPWFVSLTPYSVEQFIQADQDTLDRWRLDYAT ILVKVRSLQDILPFTPIEVNGKGCQVRTTIKEVLNCEAIPRGDEPFSESSDNGPTEFS RGRVQKAEAEGTEKGKKGIGMVESSLQVEESFKEGASNSNFKKGDTVERKGVKTNSVE AQDQLVGDEAMKSVESNLEEREQLGLLNKSGPIIEMVAKMVRAQSVSLDGSNVGNQNH GSDNEEGTDQSKTYGYKLYKENDEEEVGRLGSQMIGISGTVLRQEVDSKNEKGQSTHL EEKIKGKNKREMSIPNDAGEVGRVVVVRIPECEDDTEVGDEDNDNETKLIFEMSRLMR FEFVKGEEEVLRYFASMEEDKVEGVTSM" gene 30715403..30723016 /locus_tag="TCM_025109" /note="dbxref CacaoGD:Thecc1EG025109" mRNA join(30715403..30715642,30716751..30716768, 30716844..30717199,30722935..30723016) /locus_tag="TCM_025109" /product="Uncharacterized protein" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(30715481..30715642,30716751..30716768, 30716844..30717011) /locus_tag="TCM_025109" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09718.1" /translation="MKLTSQNVVLNIVTYTAFINGMCHVERLSVAQELFKGISAHDLV PNMVTYAILLCDGYCLDGIPIDGLSQVGQLRVGKKLFYVLTVKRLHPSFYTKDFINEG YQMKHISCLEKWK" mobile_element 30719632..30720273 /note="source:CACAO_on_E169_scaffold_5 1 596" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 30720272..30723476 /note="source:CACAO_on_E681_scaffold_9 73 3228" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 30724382..30725074 /note="source:scaffold_4_CACTA_0482 5227 5899" /mobile_element_type="transposon:TIR/CACTA" gene 30727232..30738618 /locus_tag="TCM_025110" /note="dbxref CacaoGD:Thecc1EG025110" mRNA join(30727232..30727591,30728504..30728595, 30730485..30730612,30730770..30730905,30731068..30731119, 30732533..30732633,30733956..30734135,30735719..30735876, 30736627..30736681,30736948..30737001,30738007..30738618) /locus_tag="TCM_025110" /product="Lecithin:cholesterol acyltransferase 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s07600.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029386t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s07600.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g06087t00001" CDS join(30727372..30727591,30728504..30728595, 30730485..30730612,30730770..30730905,30731068..30731119, 30732533..30732633,30733956..30734135,30735719..30735876, 30736627..30736681,30736948..30737001,30738007..30738174) /locus_tag="TCM_025110" /note="paralog of Thecc1EG029386t1" /codon_start=1 /product="Lecithin:cholesterol acyltransferase 3" /protein_id="EOY09719.1" /db_xref="Phytozome:POPTR_0008s07600.1" /db_xref="TAIR:AT3G03310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93V61" /translation="MVGDLRLCPCFGSRGSEEPEMELDPVLLVSGMGGSILHSKRKKF GFETRVWVRILFSDLEFKKKLWSLYNPETGYTESLDDDIEILVPDDDYGLYAIDILDP SWLVKLMHLTEVYHFHDMIDMLVGCGYKKGTTLFGYGYDFRQSNRIDKLMEGLKVKLE TAHKASGGRKVNIISHSMGGLLVLCFLSLHNDVFSKYVNKWITIACPFQGAPGCVNDS LLTGLQFVEGFEAYFFVSRWTMHQLLVECPSVYEMLPNPDFSWKMQPQINVWREHSED GETSVKLESYSPTESIVLFNEALRHNELNYGGNTIALPFNISILNWAAGTRKVINNAK LPSGICFYNIYGTSFDTPFDVCYGTETSPIGDLSEICHTMPQYTYVDGDGTVPAESAM ADRFAAVERAGVAASHRGLLCDKTVFKLIQKWLGVEQKVTRKYSKTSKVADASSN" mobile_element complement(30738692..30738813) /note="source:CACAO_Mutator_E1155_scaffold_5 2476 2621" /mobile_element_type="transposon:TIR/Mutator" gene complement(30739529..30742060) /locus_tag="TCM_025111" /note="dbxref CacaoGD:Thecc1EG025111" mRNA complement(join(30739529..30741631,30741954..30742060)) /locus_tag="TCM_025111" /product="Tetratricopeptide repeat-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s13130.1" /inference="similar to AA sequence:Phytozome:POPTR_0007s13130.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01177t00001" CDS complement(30739758..30741413) /locus_tag="TCM_025111" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative" /protein_id="EOY09720.1" /db_xref="Phytozome:POPTR_0007s13130.1" /db_xref="TAIR:AT5G66500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HF30" /translation="MSVSYCCIHYLSYPTRNLRAIAPKEVLMIKLQKRYAHIRHSFDE LPLQDIYSLNSQLGSYVRNGNIQATWTLFCHMHLSCCDLNAYSFSSVLSACSSLPGTK HGKQVHGLMIKTGVDAGTVAKTALMNLYSKYGCLGDSVRAFEEIELKDVVTWNALISS FLRQGLAKEALDVFATMRRERVQLSEFTLCSVLKSCASLKAFEQGKQIHGLVVVFGRD LVILSTALIDFYSDVECISEALKVFSSLNNMMDNVICNSLIRGCFKNRKFREAFSIMS KMRPNVVALTSALGACSENVDLWIGKQVHCVALRYGFTDDTQLCNVILDMYAKCGKIL NARSLFDGILHKCVVSWTSMIDAYGSHGHGLAALELFKQMRVEGKGVVPNSVTFLAVL SACGHSGQVEEGRECFNSMREKYGLNPDQEHYACFIDVLGRAGQIGEAWSLLDDMIKN GIKPTALTWSALLNACSLNQDIARGEFAAKHLLELEPDKPGNYVLLSNFYAAVGRWDS VDNLRDIMRKKGLSKEAGSSRVTVKRYNESCSIRENHIARAVL" gene complement(30742688..30743740) /locus_tag="TCM_025112" /note="dbxref CacaoGD:Thecc1EG025112" mRNA complement(join(30742688..30743094,30743230..30743412, 30743506..30743740)) /locus_tag="TCM_025112" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(join(30742981..30743094,30743230..30743412, 30743506..30743697)) /locus_tag="TCM_025112" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09721.1" /translation="MENLLELSWLMALQQQKSKFYEPCDHCQSSRTSTYFCKDCMMAF VFCERCKNRSSDHGNHDYFQVFKPSYRLGVRVHDMQGLFDVSDIKNHTHNRHTVVYVD LKDQCACRRAGGSVTRYCSIQCKVDDEAALCVQSAYDQFAEAAAVRARHRKGAPHRSP FY" mobile_element complement(30745838..30745892) /note="source:scaffold_5_CACTA_0596 1724 1780" /mobile_element_type="transposon:TIR/CACTA" gene 30751675..30758143 /locus_tag="TCM_025114" /note="dbxref CacaoGD:Thecc1EG025114" mRNA join(30751675..30752065,30753582..30753873, 30754068..30754746,30754869..30754951,30755312..30755400, 30755819..30755892,30755994..30756044,30756367..30756443, 30756702..30758143) /locus_tag="TCM_025114" /product="AP2 domain-containing transcription factor" /inference="alignment:exonerate- protein:2:ricco:29929.m004537" /inference="similar to AA sequence:Phytozome:POPTR_0008s07610.1" /note="quality class is strong, express is medium, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Newbler:10:TSA:cgbaB_g16428t00001" mobile_element complement(30752676..30752754) /note="source:scaffold_3_CACTA_0382 1861 1945" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(30752695..30752755) /note="source:CACAO_M_S_E18487_F233_scaffold_3 1212 1274" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(30753627..30753873,30754068..30754746, 30754869..30754951,30755312..30755400,30755819..30755892, 30755994..30756044,30756367..30756443,30756702..30757591) /locus_tag="TCM_025114" /codon_start=1 /product="AP2 domain-containing transcription factor" /protein_id="EOY09722.1" /db_xref="Phytozome:POPTR_0008s07610.1" /db_xref="TAIR:AT5G17430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHX9" /translation="MASMNNWLAFSLSPQELPSQTVDQDHHSQTAVSRLGFNSDDISG ADVSGECFDLTSDSSAPSLNLPPPFGILEAFNRNNQSQDWNMKGLGMNSDGNYKTSSE LSMLMGSSCNGQSLDQSNQEPKLENFLGNHSFSNHQQNKLHGCNTMYNTTTGEYMFPN CSLQLPSEDTTNARTSNGGDDNDNNNNKNNNNNTNINTGNGSSSIGLSMIKTWLRNQP APPQPEAKNNGGASQSLSLSMSTGSQTGSPLPLLTSSTGGGSGGESSSSDNNKQQKTP TGMDSESGAIEAMPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKG RQGGYDKEEKAARAYDLAALKYWGTTTTTNFPISNYEKELEEMKHMTRQEYVASLRRK SSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKF RGLNAVTNFDMSRYDVKSILESSTLPIGGAAKRLKDVEQAEMALDVQRVDDDNMSSQL TDGINNYGAAHHGWPTIAFQQAQPFSMHYPYGQRVWCKQEQDSDANHTFQDLHQLQLG STHNFFQPSVLHNLMAMDSSSMEHSSGSNSVIYCNGGGGDAAGSNGASGSYQAVGYGG NGGYVIPMGTVVASDSNQNQGNGFGDNEVKTLGYETMYGSADPYHPRNLYYLSQQSST GGVKASSYDQASACNNWVPTAVPTIAQRSSNMAVCHGAPTFTVWNDT" gene complement(30758280..30766302) /locus_tag="TCM_025115" /note="dbxref CacaoGD:Thecc1EG025115" mRNA complement(join(30758280..30758755,30759314..30759422, 30759680..30759782,30759892..30759926,30760020..30760234, 30761141..30761256,30761581..30761806,30763357..30763444, 30763527..30763601,30764348..30764423,30764655..30764713, 30764904..30764970,30765952..30766302)) /locus_tag="TCM_025115" /product="Beta-glucosidase, putative" /inference="alignment:exonerate- protein:2:TAIR:AT5G36890.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023394t3" /inference="similar to AA sequence:Phytozome:Glyma11g16220.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7266t3" CDS complement(join(30758560..30758755,30759314..30759422, 30759680..30759782,30759892..30759926,30760020..30760234, 30761141..30761256,30761581..30761806,30763357..30763444, 30763527..30763601,30764348..30764423,30764655..30764713, 30764904..30764970,30765952..30766071)) /locus_tag="TCM_025115" /note="paralog of Thecc1EG023394t3" /codon_start=1 /product="Beta-glucosidase, putative" /protein_id="EOY09723.1" /db_xref="Phytozome:Glyma11g16220.1" /db_xref="TAIR:AT5G36890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RM06" /translation="MAKKKHVLKEDEEGGSSSKQVSREDFPPDFVFGVATSSYQIEGG CKEGGRGASIWDVFAHTEGKIIDGSNADEAVDHYHRYKEDIDLISELGFSAYRFSISW PRIFPDGLGTKVNEEGIAFYNNVIDALLEKDIEPYVTLHHWDLPLHLHDSMGGWLNKQ IVEYFAIYADTCFAHFGDRVKTWTTINEPLHIAVGGYDTGTSAPGRSENSSTETYLAA HHMILANAAAVSLYHSKYKDKQGGQIGIVLDCEWAEANSEKLEDKCAAVRRVEFQLGW FLHPLYFGDYPKSMRERLGDQLPEFTEEDQELLSSFMDFVGLNQYTSRLVSHAAESAE EGHFHKAQQIEKIVEWEDGEMIGEKAASDWLYVVPWGMRKVLNYIADAYSNLPIYITE NGMDDEENDTAPLPEMLDDKLRVRFYKGYLAAVAQAINDGVDVRGYFAWSLLDNFEWS HGYTKRFGLVYVDYKNGLTRHPKSSAMWFKQFLKGGGSNKDNEE" mobile_element complement(30762601..30762638) /note="source:CACAO_M_S_E5162_F13_scaffold_1 5319 5356" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(30762665..30763017) /note="source:CACAO_Mariner_E176_scaffold_6 443 887" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(30766573..30767640) /note="source:INTACT639F_F363_scaffold_5-int 7469 8569" /mobile_element_type="retrotransposon:LTR/Copia" gene 30769666..30773571 /locus_tag="TCM_025116" /note="dbxref CacaoGD:Thecc1EG025116" mRNA join(30769666..30769771,30770418..30771067, 30772329..30772562,30773183..30773571) /locus_tag="TCM_025116" /product="Far-red impaired responsive family protein, putative" /inference="alignment:exonerate-protein:2:frave:gene21528" /inference="similar to AA sequence:frave:gene21528" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7270t1" CDS join(30769732..30769771,30770418..30771067, 30772329..30772517) /locus_tag="TCM_025116" /note="dbxref frave:gene21528" /codon_start=1 /product="Far-red impaired responsive family protein, putative" /protein_id="EOY09724.1" /db_xref="TAIR:AT3G59470.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93Z68" /translation="MIFRSSAVKTIKFMETELDNDVQLEQTDNVTRGEVLDDSTDKGH QLRNDVQLEQTDNDIRGEVLDNATNFEYQLGNDGTMAGSSVQYGSQVEENDKITLNSS GVQLTVVEGDEPYVGQEFENEAAAHAFYSAYGMRMGFITRMNYHNRSKIDGSIVSRAL VCNKEGYRKPYRRDVKNVRSRAPTRVGCKAMISIRKMSTGKWVITKFVKEHTHPLAGC QAQKALISNQMPNEDKRVQELTQQLLIERKRSASLRRFIDLLFNHIDEHTQGLSKRIQ YIVDSVNKIESEGKNR" gene complement(30773828..30776050) /locus_tag="TCM_025117" /note="dbxref CacaoGD:Thecc1EG025117" mRNA complement(join(30773828..30774590,30774909..30775093, 30775959..30776050)) /locus_tag="TCM_025117" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s07660.1" /inference="similar to AA sequence:Phytozome:POPTR_0008s07660.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaB_g13036t00001" CDS complement(join(30774143..30774590,30774909..30775090)) /locus_tag="TCM_025117" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09725.1" /db_xref="Phytozome:POPTR_0008s07660.1" /db_xref="TAIR:AT1G65420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HHY4" /translation="MACQVGRMYLQAGLSILENEVLESSCMTLATCAIQRWIIEPSIC GQASKIGLKSALFPKKSFSTRKRHGWKIAFALDTGGVSGDGGEDSLNSDSSNLGGTRL GRIVSAGSRQLLEKLNSARKNFPMKVFLLLLGFYTANALATILGQTGDWDVLVAGVVV AAIEGIGMLMYRKPPSLKTGRLQSFVVMVNYWKAGVCLGLFVDAFKLGS" gene 30775746..30783738 /locus_tag="TCM_025118" /note="dbxref CacaoGD:Thecc1EG025118" mRNA join(30775746..30776022,30778735..30779127, 30780287..30780528,30781067..30782638,30783131..30783738) /locus_tag="TCM_025118" /product="Calcineurin-like metallo-phosphoesterase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0008s07670.1" /inference="similar to AA sequence:ricco:29929.m004532" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc244t3" gene 30776615..30777263 /locus_tag="TCM_025119" /note="dbxref CacaoGD:Thecc1EG025119" mRNA 30776615..30777263 /locus_tag="TCM_025119" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.46 coverage" CDS 30776710..30776910 /locus_tag="TCM_025119" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09727.1" /translation="MLLARYHFTHLNGRYDTDVGYHFTLFFSNIFRSNGRYDADVGYH FTHSNGYYDTPLHPLLLFLLLQ" CDS join(30778836..30779127,30780287..30780528, 30781067..30782638,30783131..30783247) /locus_tag="TCM_025118" /note="dbxref ricco:29929.m004532" /codon_start=1 /product="Calcineurin-like metallo-phosphoesterase superfamily protein" /protein_id="EOY09726.1" /db_xref="TAIR:AT3G03305.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7U6I1" /translation="MIVGNMGILVLIFLLFLLCLKVPTYHAQQQDQTSSFSPHRTVID VKGGPESVVWVVQLSDLHFSVHHPDRAFDFKTLLPPALSMINPSLVLITGDLTDGKSK DLLVMRQNEEEWVEYKNIMEDVVKRSGLDKSIFYDLRGNHDNFGVPVVGGSFDFYSKY SINGQLGRSGHVNSITLQAGEQKYLFVGLDSTMSVGLRGPTNLFGHPTDQLLTEIDLE LAQWDSQSAKPVNKITFGHFPLSFSASSQSGRTLKDIFLKHSLSAYICGHLHSRFGKN LKRHHLSNHLLLSSQKFFQFNVHQIPSEGIKNCSFGAPPVEEFWEWEMGDWRKSRAMR ILAIDRGHVSFAGIDFKSGSKKTIIIPTFPLDSRFMSTSSSHNEYECEHMLPSSYETV RALVFSVSPVVSVVAKIYDSRYGNLDNVMEATMTKHVDRSSRGDLYSVPWNYKAFEDP SADRFWLQIEATDIMGRTTLTELRPFSVNGLHAKVLWTWKEFFVMGCQWAALYYPILW LTMYFLLLLLLIPRAFLIFSRKQHAYKNFLAAKGLINGIAWVLQELCRVPIAWFGFLG YLFYLVLFPWFVGQVFTDGGDRGYMTYMGWVVKSSNNKRNDYIGSPDIMVVVLPHLIF VVLPAIFFAGALAAERAVHRDNFLSISGKKADDYGRLNKRSLRYDSRGNRRSKFHFDG RWMRSILLVLCLAICWKHFKNCRALMKAYEMNPLLHFPVYSLGIPVLLGYVIHKTKGA " gene 30784185..30797481 /locus_tag="TCM_025120" /note="dbxref CacaoGD:Thecc1EG025120" mRNA join(30784185..30784631,30784900..30784961, 30785050..30785095,30786939..30787073,30787597..30787728, 30788211..30788294,30788345..30788467,30788588..30788679, 30790039..30790111,30790187..30790339,30790418..30790537, 30790702..30790755,30794111..30794194,30794396..30794470, 30794560..30794688,30795128..30795253,30795332..30795439, 30795806..30795868,30796155..30796229,30796551..30796753, 30796839..30797481) /locus_tag="TCM_025120" /product="Gamma-tubulin complex component, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032444001" /inference="similar to AA sequence:Phytozome:POPTR_0010s18810.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:PASA:2:TSA:puevd3b024300t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7303t3" mRNA join(30784185..30784631,30784900..30784961, 30785050..30785095,30786939..30787073,30787597..30787728, 30788211..30788294,30788369..30788467,30788588..30788679, 30790039..30790111,30790187..30790339,30790418..30790537, 30790702..30790755,30794111..30794194,30794396..30794470, 30794560..30794688,30795128..30795253,30795332..30795439, 30795806..30795868,30796155..30796229,30796551..30796753, 30796839..30797481) /locus_tag="TCM_025120" /product="Gamma-tubulin complex component, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032444001" /inference="similar to AA sequence:Phytozome:POPTR_0010s18810.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7303t3" mRNA join(30784516..30784631,30784897..30784961, 30785050..30785095,30786939..30787073,30787597..30787728, 30788211..30788294,30788369..30788467,30788588..30788679, 30790039..30790111,30790187..30790339,30790418..30790537, 30790702..30790755,30794111..30794194,30794396..30794470, 30794560..30794688,30795128..30795253,30795332..30795439, 30795806..30795868,30796155..30796229,30796551..30796753, 30796839..30797379) /locus_tag="TCM_025120" /product="Gamma-tubulin complex component, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032444001" /inference="similar to AA sequence:Phytozome:POPTR_0010s18810.2" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7303t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7303t3" CDS join(30784560..30784631,30784897..30784961, 30785050..30785095,30786939..30787073,30787597..30787728, 30788211..30788294,30788369..30788467,30788588..30788679, 30790039..30790111,30790187..30790339,30790418..30790537, 30790702..30790755,30794111..30794194,30794396..30794470, 30794560..30794688,30795128..30795253,30795332..30795439, 30795806..30795868,30796155..30796229,30796551..30796753, 30796839..30796965) /locus_tag="TCM_025120" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Gamma-tubulin complex component, putative isoform 3" /protein_id="EOY09730.1" /db_xref="Phytozome:POPTR_0010s18810.2" /db_xref="TAIR:AT5G17410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SV58" /translation="MESSCPSTPRWNLDRPFLTGRFHQQEIKGTSRFAADAKGFSLDS CSSGLENPIGCYDAAVQELIVTDDLLFALVGIEGRYISIKRVHGKDDAVTFQVDASMD LALQEFARRIFPLCESFLLIDQFVESRSQFKNGLVNHAFAAALRALLLDYQAMVAQLE HQFRLGRLSIQGLWFYCQPMMGSMQALSTVIQKASANNYAGSAVLNLLQSQAKAMAGD NAVRSLLEKMTQSASNAYLSILERWIYEGVIDDPYGEFFIAENKSLQKESLTQDYEAK YWRERYSLKEDIPSFLANIAGIILTTGKYLNVMRECGHNVQVPVSENSKLMTFGSNHH YLECVKAAYDFASGELLNLIKEKYDLIGKLRSIKHYLLLDQGDFLVHFMDIAREVLLK KHDEISVEKLQSLLDLALRTTAAAADPCHEDLTCCVERSSVLKGLSTLKDLDIRNVSD SNDLEESISITGLETFSLSYKIRWPLSIVISRKALTKYQLIFRFLFHCKHVERQLCGA WQLHQGVRALNTRGTAISRSSLLCRSMLRFINSLLHYLTFEVLEPNWHVMHGRLQTAK SIDEVIQHHDFFLDKCLRECLLLLPELLKKVGKLKSLCLQYAAATQWLISSSVDIPKL EEQSDGSLGSERSKPLKSRNPSQAQKVMTRNSAVTDSILKFEREFNAELQSLRPILSS SSQAEPYLTHLAQWILGVGNDQ" CDS join(30784560..30784631,30784900..30784961, 30785050..30785095,30786939..30787073,30787597..30787728, 30788211..30788294,30788345..30788467,30788588..30788679, 30790039..30790111,30790187..30790339,30790418..30790537, 30790702..30790755,30794111..30794194,30794396..30794470, 30794560..30794688,30795128..30795253,30795332..30795439, 30795806..30795868,30796155..30796229,30796551..30796753, 30796839..30796965) /locus_tag="TCM_025120" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Gamma-tubulin complex component, putative isoform 2" /protein_id="EOY09729.1" /db_xref="Phytozome:POPTR_0010s18810.2" /db_xref="TAIR:AT5G17410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SV58" /translation="MESSCPSTPRWNLDRPFLTGRFHQEIKGTSRFAADAKGFSLDSC SSGLENPIGCYDAAVQELIVTDDLLFALVGIEGRYISIKRVHGKDDAVTFQVDASMDL ALQEFARRIFPLCESFLLIDQFVESRSQFKNGLVNHAFAAALRALLLDYQAMVAQLEH QFRLGRLSIQGLWFYCQSFSPMCWQPMMGSMQALSTVIQKASANNYAGSAVLNLLQSQ AKAMAGDNAVRSLLEKMTQSASNAYLSILERWIYEGVIDDPYGEFFIAENKSLQKESL TQDYEAKYWRERYSLKEDIPSFLANIAGIILTTGKYLNVMRECGHNVQVPVSENSKLM TFGSNHHYLECVKAAYDFASGELLNLIKEKYDLIGKLRSIKHYLLLDQGDFLVHFMDI AREVLLKKHDEISVEKLQSLLDLALRTTAAAADPCHEDLTCCVERSSVLKGLSTLKDL DIRNVSDSNDLEESISITGLETFSLSYKIRWPLSIVISRKALTKYQLIFRFLFHCKHV ERQLCGAWQLHQGVRALNTRGTAISRSSLLCRSMLRFINSLLHYLTFEVLEPNWHVMH GRLQTAKSIDEVIQHHDFFLDKCLRECLLLLPELLKKVGKLKSLCLQYAAATQWLISS SVDIPKLEEQSDGSLGSERSKPLKSRNPSQAQKVMTRNSAVTDSILKFEREFNAELQS LRPILSSSSQAEPYLTHLAQWILGVGNDQ" CDS join(30784560..30784631,30784900..30784961, 30785050..30785095,30786939..30787073,30787597..30787728, 30788211..30788294,30788369..30788467,30788588..30788679, 30790039..30790111,30790187..30790339,30790418..30790537, 30790702..30790755,30794111..30794194,30794396..30794470, 30794560..30794688,30795128..30795253,30795332..30795439, 30795806..30795868,30796155..30796229,30796551..30796753, 30796839..30796965) /locus_tag="TCM_025120" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Gamma-tubulin complex component, putative isoform 1" /protein_id="EOY09728.1" /db_xref="Phytozome:POPTR_0010s18810.2" /db_xref="TAIR:AT5G17410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SV58" /translation="MESSCPSTPRWNLDRPFLTGRFHQEIKGTSRFAADAKGFSLDSC SSGLENPIGCYDAAVQELIVTDDLLFALVGIEGRYISIKRVHGKDDAVTFQVDASMDL ALQEFARRIFPLCESFLLIDQFVESRSQFKNGLVNHAFAAALRALLLDYQAMVAQLEH QFRLGRLSIQGLWFYCQPMMGSMQALSTVIQKASANNYAGSAVLNLLQSQAKAMAGDN AVRSLLEKMTQSASNAYLSILERWIYEGVIDDPYGEFFIAENKSLQKESLTQDYEAKY WRERYSLKEDIPSFLANIAGIILTTGKYLNVMRECGHNVQVPVSENSKLMTFGSNHHY LECVKAAYDFASGELLNLIKEKYDLIGKLRSIKHYLLLDQGDFLVHFMDIAREVLLKK HDEISVEKLQSLLDLALRTTAAAADPCHEDLTCCVERSSVLKGLSTLKDLDIRNVSDS NDLEESISITGLETFSLSYKIRWPLSIVISRKALTKYQLIFRFLFHCKHVERQLCGAW QLHQGVRALNTRGTAISRSSLLCRSMLRFINSLLHYLTFEVLEPNWHVMHGRLQTAKS IDEVIQHHDFFLDKCLRECLLLLPELLKKVGKLKSLCLQYAAATQWLISSSVDIPKLE EQSDGSLGSERSKPLKSRNPSQAQKVMTRNSAVTDSILKFEREFNAELQSLRPILSSS SQAEPYLTHLAQWILGVGNDQ" mRNA join(30785072..30785095,30786988..30787073, 30787597..30787728,30788211..30788294,30788345..30788467, 30788588..30788679,30790039..30790111,30790187..30790339, 30790418..30790537,30790702..30790755,30794111..30794194, 30794396..30794470,30794560..30794688,30795128..30795253, 30795332..30795439,30795806..30795868,30796155..30796229, 30796551..30796753,30796839..30797372) /locus_tag="TCM_025120" /product="Gamma-tubulin complex component, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032444001" /inference="similar to AA sequence:Phytozome:POPTR_0010s18810.2" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc552t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7303t3" mRNA join(30785072..30785095,30786988..30787073, 30787597..30787728,30788211..30788294,30788369..30788467, 30788588..30788679,30790039..30790111,30790187..30790339, 30790418..30790537,30790702..30790755,30794111..30794194, 30794396..30794470,30794560..30794688,30795128..30795253, 30795332..30795439,30795806..30795868,30796155..30796229, 30796551..30796753,30796839..30797372) /locus_tag="TCM_025120" /product="Gamma-tubulin complex component, putative isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032444001" /inference="similar to AA sequence:Phytozome:POPTR_0010s18810.2" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc552t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7303t3" mobile_element 30785342..30786218 /note="source:CACAO_MITE_S140_scaffold_5 1 877" /mobile_element_type="transposon:TIR/MITE" CDS join(30787056..30787073,30787597..30787728, 30788211..30788294,30788345..30788467,30788588..30788679, 30790039..30790111,30790187..30790339,30790418..30790537, 30790702..30790755,30794111..30794194,30794396..30794470, 30794560..30794688,30795128..30795253,30795332..30795439, 30795806..30795868,30796155..30796229,30796551..30796753, 30796839..30796965) /locus_tag="TCM_025120" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Gamma-tubulin complex component, putative isoform 4" /protein_id="EOY09731.1" /db_xref="Phytozome:POPTR_0010s18810.2" /db_xref="TAIR:AT5G17410.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SV58" /translation="MDLALQEFARRIFPLCESFLLIDQFVESRSQFKNGLVNHAFAAA LRALLLDYQAMVAQLEHQFRLGRLSIQGLWFYCQSFSPMCWQPMMGSMQALSTVIQKA SANNYAGSAVLNLLQSQAKAMAGDNAVRSLLEKMTQSASNAYLSILERWIYEGVIDDP YGEFFIAENKSLQKESLTQDYEAKYWRERYSLKEDIPSFLANIAGIILTTGKYLNVMR ECGHNVQVPVSENSKLMTFGSNHHYLECVKAAYDFASGELLNLIKEKYDLIGKLRSIK HYLLLDQGDFLVHFMDIAREVLLKKHDEISVEKLQSLLDLALRTTAAAADPCHEDLTC CVERSSVLKGLSTLKDLDIRNVSDSNDLEESISITGLETFSLSYKIRWPLSIVISRKA LTKYQLIFRFLFHCKHVERQLCGAWQLHQGVRALNTRGTAISRSSLLCRSMLRFINSL LHYLTFEVLEPNWHVMHGRLQTAKSIDEVIQHHDFFLDKCLRECLLLLPELLKKVGKL KSLCLQYAAATQWLISSSVDIPKLEEQSDGSLGSERSKPLKSRNPSQAQKVMTRNSAV TDSILKFEREFNAELQSLRPILSSSSQAEPYLTHLAQWILGVGNDQ" CDS join(30787056..30787073,30787597..30787728, 30788211..30788294,30788369..30788467,30788588..30788679, 30790039..30790111,30790187..30790339,30790418..30790537, 30790702..30790755,30794111..30794194,30794396..30794470, 30794560..30794688,30795128..30795253,30795332..30795439, 30795806..30795868,30796155..30796229,30796551..30796753, 30796839..30796965) /locus_tag="TCM_025120" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Gamma-tubulin complex component, putative isoform 5" /protein_id="EOY09732.1" /db_xref="Phytozome:POPTR_0010s18810.2" /db_xref="TAIR:AT5G17410.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SV58" /translation="MDLALQEFARRIFPLCESFLLIDQFVESRSQFKNGLVNHAFAAA LRALLLDYQAMVAQLEHQFRLGRLSIQGLWFYCQPMMGSMQALSTVIQKASANNYAGS AVLNLLQSQAKAMAGDNAVRSLLEKMTQSASNAYLSILERWIYEGVIDDPYGEFFIAE NKSLQKESLTQDYEAKYWRERYSLKEDIPSFLANIAGIILTTGKYLNVMRECGHNVQV PVSENSKLMTFGSNHHYLECVKAAYDFASGELLNLIKEKYDLIGKLRSIKHYLLLDQG DFLVHFMDIAREVLLKKHDEISVEKLQSLLDLALRTTAAAADPCHEDLTCCVERSSVL KGLSTLKDLDIRNVSDSNDLEESISITGLETFSLSYKIRWPLSIVISRKALTKYQLIF RFLFHCKHVERQLCGAWQLHQGVRALNTRGTAISRSSLLCRSMLRFINSLLHYLTFEV LEPNWHVMHGRLQTAKSIDEVIQHHDFFLDKCLRECLLLLPELLKKVGKLKSLCLQYA AATQWLISSSVDIPKLEEQSDGSLGSERSKPLKSRNPSQAQKVMTRNSAVTDSILKFE REFNAELQSLRPILSSSSQAEPYLTHLAQWILGVGNDQ" gene 30798192..30799011 /locus_tag="TCM_025121" /note="dbxref CacaoGD:Thecc1EG025121" mRNA join(30798192..30798355,30798448..30799011) /locus_tag="TCM_025121" /product="SKP1-like 11, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006613t1" /inference="similar to AA sequence:Phytozome:GSVIVT01024013001" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7305t1" CDS join(30798299..30798355,30798448..30798750) /locus_tag="TCM_025121" /note="paralog of Thecc1EG006613t1" /codon_start=1 /product="SKP1-like 11, putative" /protein_id="EOY09733.1" /db_xref="Phytozome:GSVIVT01024013001" /db_xref="TAIR:AT4G34210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q39255" /translation="MASTSRKIKLMSSDGEAFEIMAKVLEYCEKHTDKERIPENKLKA WDADFVKVDQNTLFGLILAANYLNMKSLLHLTCQTVADMIKGKTPEEIRKIFNIKNDF SREEEEDVRRENQWGFE" mobile_element complement(30799695..30799949) /note="source:CACAO_on_E26_scaffold_4 90 329" /mobile_element_type="transposon:TIR/hAT" gene 30800372..30802122 /locus_tag="TCM_025122" /note="dbxref CacaoGD:Thecc1EG025122" mRNA join(30800372..30800752,30800948..30801150, 30801499..30802122) /locus_tag="TCM_025122" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(30800436..30800752,30800948..30801150, 30801499..30801719) /locus_tag="TCM_025122" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09734.1" /translation="MAMVNLIGFHPLLGLLECHRLGEALSTHGPSRGFRHLWDFMHAV DSSVMVPLSLFGLINGLRKMKHFASSILDFSLLQRTRRHECMIFGTMAIGLSLFVVTF THGRFKASYGSLLLTRSPPKPSFTGGVWTLAQSNCAALGVVMSWRHVRTTFSHAILVG QYGALFFNGGGYHDGLTKDKLGPAGCGGILCNSDGYVVGVFLGPLGIQDSNFAELMAI LHVVRFFSYSSFTSSKLIIEFDSKNALS" gene 30802475..30803403 /locus_tag="TCM_025123" /note="dbxref CacaoGD:Thecc1EG025123" mRNA join(30802475..30802876,30802969..30803403) /locus_tag="TCM_025123" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc6438t1" CDS join(30802544..30802876,30802969..30803136) /locus_tag="TCM_025123" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09735.1" /translation="MSVENANTGALAAAKNANPDALAQTDCRIINKTGKALTFVVSKD WVGKLGYSRLVLGKQDSDGPLLVHFGEIPPDNSSGGSVGFVVYRYKHKDGVQKDWCIA WSNKGERNKVWTRIDQPDANWYKLVDLKDSECNYNDPGKILKAHVEIEAAKTHAKLTA TLSLFK" gene complement(30805954..30808456) /locus_tag="TCM_025125" /note="dbxref CacaoGD:Thecc1EG025125" mRNA complement(join(30805954..30806531,30807715..30807769, 30808057..30808409)) /locus_tag="TCM_025125" /product="SufE/NifU family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30147.m013940" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012081t1" /inference="similar to AA sequence:ricco:30147.m013940" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11247t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14294t2" mRNA complement(join(30805957..30806531,30807346..30807426, 30807715..30807769,30808057..30808456)) /locus_tag="TCM_025125" /product="SufE/NifU family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30147.m013940" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012081t1" /inference="similar to AA sequence:ricco:30147.m013940" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14294t2" CDS complement(join(30806372..30806531,30807715..30807769, 30808057..30808354)) /locus_tag="TCM_025125" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m013940; paralog of Thecc1EG012081t1" /codon_start=1 /product="SufE/NifU family protein isoform 2" /protein_id="EOY09737.1" /db_xref="TAIR:AT4G22220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9H1K1" /translation="MLRLVSKRLLGLASHEFPPRPVQILPRLYHENVIDHYNNPRNVG SFDKNDPNVGTGLVGAPACGDVMKLQIKIDDESGKIVDACFKTFGCGSAIASSSVATE WVKGKSMEEVVTIKNTEIAKHLALPPVKLHCSMLAEDAIKAAVKDVEAKRAKLNGSSN AAPIEKAADA" CDS complement(join(30806372..30806531,30807346..30807426, 30807715..30807769,30808057..30808354)) /locus_tag="TCM_025125" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m013940; paralog of Thecc1EG012081t1" /codon_start=1 /product="SufE/NifU family protein isoform 1" /protein_id="EOY09736.1" /db_xref="TAIR:AT4G22220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9H1K1" /translation="MLRLVSKRLLGLASHEFPPRPVQILPRLYHENVIDHYNNPRNVG SFDKNDPNVGTGLVGAPACGDVMKLQIKIDDESGKIVDACFKTFGCGSAIASSSVATE WVKGKSMEEVVTIKNTSSSLSHAFNFLSSKFLSALSSSHICIWEIAKHLALPPVKLHC SMLAEDAIKAAVKDVEAKRAKLNGSSNAAPIEKAADA" gene complement(30809234..30814070) /locus_tag="TCM_025126" /note="dbxref CacaoGD:Thecc1EG025126" mRNA complement(join(30809234..30809598,30809723..30809913, 30811475..30813517,30813918..30814070)) /locus_tag="TCM_025126" /product="Nucleolar GTP-binding protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0009s05870.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040692t1" /inference="similar to AA sequence:Phytozome:Glyma11g14190.2" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.40 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01570t00001" CDS complement(30811480..30813504) /locus_tag="TCM_025126" /note="paralog of Thecc1EG040692t1" /codon_start=1 /product="Nucleolar GTP-binding protein" /protein_id="EOY09738.1" /db_xref="Phytozome:Glyma11g14190.2" /db_xref="TAIR:AT1G50920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C6I8" /translation="MVQYNFKKITVVPNGKDFIDIILSRTQRQTPTVVHKGYAISRLR QFYMRKVKYTQQNFHEKLSTIIDEFPRLDDIHPFYGDLLHVLYNKDHYKLALGQINTA RNLISKIAKDYVKLLKYGDSLYRCKSLKVAALGRMCTVIKRIGPSLAYLEQIRQHMAR LPSIDPNTRTILICGYPNVGKSSFMNKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQ VIDTPGILDRPFEDRNIIEMCSITALAHLRAAVMFFLDISGSCGYSIAQQAALFHSIK SLFMNKPLIIVCNKTDLQPLDGISEEDRKLVMEMKAEAMKTVIGQGGEPANEEGVLLT MSTLTEDGVISVKNAACERLLNQRVELKMKSKKINDCLNRFHVAIPKPRDQKERPPCI PQAVLEAKAKQAAEKEKRKTEKDLEDENGGAGVYSASLRKNYILANDEWKEDIMPEIL DGHNVYDFIDPDILLRLEELEREEGLRQAEEEADDFEMDGQELSPEEQEALAEIRKKK SLLIQQHRMKKSTAESRPIVPRKHDTDRKFTTERMGRQLSALGLDPSLAINRARSKSR GRKRERSVDRREGDGGDAMDIDGNEPNKKLRLRSTSRSRSRSRPPTEVVPGEGLKDSA QKVKAIKLAKKSVKKRNKNARRGEADRVIPTLKPKHLFSGKRSIGKTQRR" gene complement(30814725..30822223) /locus_tag="TCM_025127" /note="dbxref CacaoGD:Thecc1EG025127" mRNA complement(join(30814725..30815573,30815661..30815751, 30816040..30816098,30817254..30817325,30819237..30819284, 30820001..30820096,30820192..30820254,30821848..30822223)) /locus_tag="TCM_025127" /product="UPF0510 protein INM02" /inference="alignment:exonerate- protein:2:TAIR:AT1G65270.2" /inference="similar to AA sequence:Phytozome:POPTR_0019s08280.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14329t3" CDS complement(join(30815415..30815573,30815661..30815751, 30816040..30816098,30817254..30817325,30819237..30819284, 30820001..30820096,30820192..30820254,30821848..30822162)) /locus_tag="TCM_025127" /codon_start=1 /product="UPF0510 protein INM02" /protein_id="EOY09739.1" /db_xref="Phytozome:POPTR_0019s08280.1" /db_xref="TAIR:AT1G65270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80798" /translation="MKTTEVIVAFILTLSLLSFPSLGFQSDELLVDDEEFGLEGAPQP RSPEPIPSRSQPVTTPTRKRHSDLDSDSKIQFSLDHAFGDSDFTPAGTFSARLKTWSH GGQTLTKLRFSRNSFTDEEKEKFKNLLESDDFYRIRLPSNVLSPPGRDFIISSVKARC LPREGLDEHFVIHMEGINVLAVNYGSPGSCPYPRNLKLPAKWSFNSHTVLKNSEQAPR APVFTEEILGGENGEGEVVPPPERSFWAKYWMYLIPLGLIVMNAITQAMNLPEEQATG QVPAQGQPSGGAMQRGPSSAVRRR" gene 30823718..30839845 /locus_tag="TCM_025128" /note="dbxref CacaoGD:Thecc1EG025128" mRNA join(30823718..30824166,30824975..30825027, 30825420..30825588,30825692..30825755,30826810..30826889, 30827053..30827206,30827578..30827639,30827817..30827879, 30828596..30828654,30828973..30829054,30830106..30830152, 30830274..30830519,30830781..30830843,30830918..30830976, 30839620..30839652) /locus_tag="TCM_025128" /product="RNA-binding protein Luc7-like 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019063001" /inference="similar to AA sequence:Phytozome:Glyma09g38430.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01519t00002" mRNA join(30823860..30824166,30824975..30825027, 30825420..30825588,30825692..30825755,30826810..30826889, 30827053..30827206,30827578..30827639,30827817..30827879, 30828596..30828654,30828973..30829054,30830106..30830152, 30830274..30830519,30830781..30830976,30839620..30839845) /locus_tag="TCM_025128" /product="RNA-binding protein Luc7-like 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019063001" /inference="similar to AA sequence:Phytozome:Glyma09g38430.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7573t2; alternateUTRof:Thecc1EG025128t1; inference alignment:Newbler:10:TSA:cgbaL_g01519t00002; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14330t1" CDS join(30824020..30824166,30824975..30825027, 30825420..30825588,30825692..30825755,30826810..30826889, 30827053..30827206,30827578..30827639,30827817..30827879, 30828596..30828654,30828973..30829054,30830106..30830152, 30830274..30830519,30830781..30830796) /locus_tag="TCM_025128" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="RNA-binding protein Luc7-like 1 isoform 1" /protein_id="EOY09740.1" /db_xref="Phytozome:Glyma09g38430.1" /db_xref="TAIR:AT5G17440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q940U9" /translation="MDAMRKQLDVLMGANRNGDVREVNRKYYDRDVCRLFLSGLCPHE LFQLTKMDMGPCPKVHSLQLRKEYEEAKAKGVDNYDRELEDAIDRLIVECDRKIGRAL KRLEDEDAKAAIAISVSDVTQTPEVLELSKQIKEKLKEADQHDLEGKTDLKIRALEEV EEFRTKRADKQSMLLLDAFNKDRASLPQPLPNPPALAPLPVPAPDPRTQEMINEKLKK AEDLGEKGMVDEAQKALEEAEALKKLPARQEPVLDSSKYTAADVRITDQKLRVCDICG AFLSVYDSDRRLADHFGGKLHLGYMQIRDKLAELQEERNKSRKLDRHDDRRSKEQSKD CDRESSRDHDRGDSRDRGRDYDRRSRDRDRYYDRDRGHDRDRERDYERSRSYDSRSRR RSRSRSKERSRDYDRHRRDRY" CDS join(30824020..30824166,30824975..30825027, 30825420..30825588,30825692..30825755,30826810..30826889, 30827053..30827206,30827578..30827639,30827817..30827879, 30828596..30828654,30828973..30829054,30830106..30830152, 30830274..30830519,30830781..30830796) /locus_tag="TCM_025128" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="RNA-binding protein Luc7-like 1 isoform 1" /protein_id="EOY09741.1" /db_xref="Phytozome:Glyma09g38430.1" /db_xref="TAIR:AT5G17440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q940U9" /translation="MDAMRKQLDVLMGANRNGDVREVNRKYYDRDVCRLFLSGLCPHE LFQLTKMDMGPCPKVHSLQLRKEYEEAKAKGVDNYDRELEDAIDRLIVECDRKIGRAL KRLEDEDAKAAIAISVSDVTQTPEVLELSKQIKEKLKEADQHDLEGKTDLKIRALEEV EEFRTKRADKQSMLLLDAFNKDRASLPQPLPNPPALAPLPVPAPDPRTQEMINEKLKK AEDLGEKGMVDEAQKALEEAEALKKLPARQEPVLDSSKYTAADVRITDQKLRVCDICG AFLSVYDSDRRLADHFGGKLHLGYMQIRDKLAELQEERNKSRKLDRHDDRRSKEQSKD CDRESSRDHDRGDSRDRGRDYDRRSRDRDRYYDRDRGHDRDRERDYERSRSYDSRSRR RSRSRSKERSRDYDRHRRDRY" gene complement(30827121..30832850) /locus_tag="TCM_025129" /note="dbxref CacaoGD:Thecc1EG025129" mRNA complement(join(30827121..30827149,30832097..30832850)) /locus_tag="TCM_025129" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s08250.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030643t1" /inference="similar to AA sequence:TAIR:AT2G47840.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc449t1_C2" CDS complement(30832110..30832721) /locus_tag="TCM_025129" /note="paralog of Thecc1EG030643t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09742.1" /db_xref="TAIR:AT2G47840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PA48" /translation="MASLCYSLQLAPKLSPINPKSFPNLTFLNQSKSKVRLARRPTIT RMSLNPTPATDRLISAAAYTLPFFNSLQYGRYLFIQYPQLGTLFDPLIPLLSLYKSVP YASFVAFFALYLGVVRNPSFSHYVRFNSMQAVTLDVLLIVPLLLTRILNPGRAGLGYQ VMVWGHTGVFVFSCLCFVYGVVWSILGRTPYLPFVADAAGRQV" mobile_element 30833350..30833469 /note="source:CACAO_M_S_E5860_F197_scaffold_2 11495 11625" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(30833362..30834284) /note="source:CACAO_M_E57337_F76_scaffold_9 4620 5531" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(30834286..30835506) /note="source:scaffold_3_CACTA_0383 4293 5463" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(30835498..30835736) /note="source:CACAO_M_E14113_F106_scaffold_3 5372 5610" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 30835737..30837942 /note="source:INTACT1232F_F375_scaffold_6-int 1 2154" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(30837955..30839107) /note="source:CACAO_M_E58601_F7_scaffold_9 4313 5455" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30838432..30839992 /note="source:INTACT1232F_F375_scaffold_6-int 2917 4459" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(30839861..30840008) /note="source:INTACT695_F301_scaffold_5-int 11842 11986" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(30839993..30840981) /note="source:CACAO_M_E56681_F47_scaffold_8 1 1008" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 30840982..30841739 /note="source:CACAO_M_S_E119572_F76_scaffold_9 943 1719" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30841729..30844451 /note="source:CACAO_M_E44088_F76_scaffold_5 2036 4746" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(30844534..30845288) /note="source:CACAO_M_E35271_F316_scaffold_5 1 774" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 30845289..30845327 /note="source:CACAO_on_SS_E42_scaffold_2 2619 2663" /mobile_element_type="transposon:TIR/Mutator" mobile_element 30845669..30845807 /note="source:scaffold_5_CACTA_0584 7143 7251" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(30845791..30845903) /note="source:INTACT1306F_F379_scaffold_7-int 2900 2996" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30849169..30850704 /note="source:INTACT1232F_F375_scaffold_6-int 8609 10173" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(30850559..30850738) /note="source:CACAO_M_E12044_F76_scaffold_2 6969 7156" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30851673..30852737 /note="source:CACAO_M_E3969_F127_scaffold_1 1103 2160" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 30854733..30856786 /note="source:CACAO_M_E44103_F106_scaffold_5 1 2054" /mobile_element_type="retrotransposon:LTR/Copia" gene 30858168..30862997 /locus_tag="TCM_025133" /note="dbxref CacaoGD:Thecc1EG025133" mRNA join(30858168..30858335,30859361..30859944, 30860198..30860525,30861986..30862997) /locus_tag="TCM_025133" /product="Flavonol synthase" /inference="alignment:exonerate- protein:2:TAIR:AT5G08640.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035060t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s01130.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14297t1" CDS join(30859478..30859944,30860198..30860525, 30861986..30862198) /locus_tag="TCM_025133" /note="paralog of Thecc1EG035060t1" /codon_start=1 /product="Flavonol synthase" /protein_id="EOY09743.1" /db_xref="Phytozome:POPTR_0019s01130.1" /db_xref="TAIR:AT5G08640.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2PGC6" /translation="MEVERVQAIALSSLTKDSIPTEFIRPEEEQPAITTFHGPVPEIP VIDLDDHDQEKVIRLIANASRDWGIFQVVNHGIPFDLIEKLQQVGKEFFDLPQEEKEL YAKPNGAQTIEGYGSKLGKDLQGKKNWADHLFHRIWPPSRINYQFWPQNPPSYRAVNE EYAEYMRRVVDKLFKSLSIGLGLAPHAIKEGAGGEEMEYLMKINYYPTCPRPDLALGV ASHTDLSAITVLVPNDVPGLQVFKDGLWIDAKYIPGALIIHIGDQIEILSNGKYKAVL HRTTVDKEKTRMSWPVFLEPPGEFVVGPLPQLADEQNPPKYKAKRFKDYSYCKLNKLP Q" mobile_element 30860754..30861109 /note="source:CACAO_on_SS_E42_scaffold_2 23378 23733" /mobile_element_type="transposon:TIR/Mutator" mobile_element 30861108..30861931 /note="source:CACAO_on_SS_E42_scaffold_2 23688 24546" /mobile_element_type="transposon:TIR/Mutator" gene complement(30863215..30867012) /locus_tag="TCM_025134" /note="dbxref CacaoGD:Thecc1EG025134" mRNA complement(join(30863215..30863590,30863684..30863979, 30864113..30864393,30865739..30866063,30866539..30866692, 30866851..30867012)) /locus_tag="TCM_025134" /product="Pleiotropic drug resistance 3, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s14930.1" /inference="similar to AA sequence:ricco:29681.m001339" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1093t6" CDS complement(join(30863481..30863590,30863684..30863979, 30864113..30864393,30865739..30866063,30866539..30866692, 30866851..30866983)) /locus_tag="TCM_025134" /note="dbxref ricco:29681.m001339" /codon_start=1 /product="Pleiotropic drug resistance 3, putative" /protein_id="EOY09744.1" /db_xref="TAIR:AT2G29940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7PC88" /translation="MPVDSSSPSSQTVCVTGAGGFIASWIVKLLLEKGYTVKGTVRNP VDYFSPALLIHIYIYMLAEHMEDLANLEKERKIRPVPEIDAFMKVTCAFILHQHYPYA GEMVVGPRKTLFMNEISTGLDSSTTFQIVEYVHNFVHLMEGTVLMVLDLQPAPETFEL FDDLVLLSEGYMVYQGPRVELLEFFESLGFKLPPHEGIADFLREEMSAHGVPERRLQL VSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTRGYIEGDINILGYTKEQKASAR VSGYVEQNDINSPQVTVEESLCSLQEFDEEVMRLVEVDTLRNALVGLPGSYGESTEQT KRLTIAVELVANASIIFTDEPTFGPDARTSAIVMKTVRNTVDTGRNCGVQYSPTLFKA CDEVTAASETRRLGCIWRKAWTKLADFDRLFPGDLALSLL" mobile_element 30868357..30868565 /note="source:CACAO_on_E459_scaffold_2 2555 2744" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 30869615..30883365 /locus_tag="TCM_025135" /note="dbxref CacaoGD:Thecc1EG025135" mRNA join(30869615..30870314,30872212..30872384, 30874228..30874336,30875740..30875885,30879192..30879356, 30880694..30881054,30881149..30881399,30881473..30881587, 30881711..30881966,30882051..30882219,30882763..30883311) /locus_tag="TCM_025135" /product="Glutamine-fructose-6-phosphate transaminase (isomerizing)s,sugar binding,transaminases isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400011986.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005839t2" /inference="similar to AA sequence:Phytozome:GSVIVT01032211001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04400t00001" CDS join(30870059..30870314,30872212..30872384, 30874228..30874336,30875740..30875885,30879192..30879356, 30880694..30881054,30881149..30881399,30881473..30881587, 30881711..30881966,30882051..30882219,30882763..30882846) /locus_tag="TCM_025135" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG005839t2" /codon_start=1 /product="Glutamine-fructose-6-phosphate transaminase (isomerizing)s,sugar binding,transaminases isoform 1" /protein_id="EOY09745.1" /db_xref="Phytozome:GSVIVT01032211001" /db_xref="TAIR:AT3G24090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LIP9" /translation="MCGIFAYLNYNVHRERRYILQVLFNGLRRLEYRGYDSAGISIDN DVAFSRDPNTPQSSSNPSLFPSPLVFRQEGNIESLVKSVYEEVAATELNLEESFCIHA GIAHTRWATHGEPAPRNSHPQTSGSGNDFLVVHNGVITNYEVLKETLVRHGFTFESET DTEVIPKLAKFVFDKANEEGDDAVTFSQVVLEVMRHLEGAYALIFKSRHYPNELIACK RGSPLLLGVKELNEGVCNASAFHDAKFLSKNGNPKELFLSSDANALIEHTKKVLVIED GEVVHLKEGGVSILKFDNEKGRNGGSLSRPASVQRALSILEMEVEQINKGKYEHYMQK EIHEQPESLTTTMRGRLIRGGSCKAKTVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAA LAARPILEELSGVPVTMEIASDLLDRQGPIYREDTAVFVSQSGETADTLHALEYALEN GALCVGITNTVGSVIARKTHCGVHINAGCEIGVASTKAYTSQIVVMAILALAIGGDTI SNQERREAIIDGLFDLPNKIRDVLKLDQEMKDLAKLLIAEQSLLVFGRGYNYATALEG ALKVKEVALMHSEGILAGEMKHGPLALVDENLPIVVIATRDACFSKQQSVIQQLHARK GRLIVMCSKGDAASVCSGGACRVIEVSYVEDCLQPVVNVVPLQLLAYHLTVLRGYNVD QPRNLAKSVTTQ" mRNA join(30872362..30872384,30873556..30873594, 30874228..30874336,30875740..30875885,30879192..30879356, 30880694..30881054,30881149..30881399,30881473..30881587, 30881711..30881966,30882051..30882219,30882763..30883365) /locus_tag="TCM_025135" /product="Glutamine-fructose-6-phosphate transaminase (isomerizing)s,sugar binding,transaminases isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400011986.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005839t2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc151t3; inference alignment:Newbler:10:TSA:cgbaB_g04400t00001" CDS join(30875781..30875885,30879192..30879356, 30880694..30881054,30881149..30881399,30881473..30881587, 30881711..30881966,30882051..30882219,30882763..30882846) /locus_tag="TCM_025135" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG005839t2" /codon_start=1 /product="Glutamine-fructose-6-phosphate transaminase (isomerizing)s,sugar binding,transaminases isoform 2" /protein_id="EOY09746.1" /db_xref="TAIR:AT3G24090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LIP9" /translation="MRHLEGAYALIFKSRHYPNELIACKRGSPLLLGVKELNEGVCNA SAFHDAKFLSKNGNPKELFLSSDANALIEHTKKVLVIEDGEVVHLKEGGVSILKFDNE KGRNGGSLSRPASVQRALSILEMEVEQINKGKYEHYMQKEIHEQPESLTTTMRGRLIR GGSCKAKTVLLGGLKDHLKTIRRSRRIVFIGCGTSYNAALAARPILEELSGVPVTMEI ASDLLDRQGPIYREDTAVFVSQSGETADTLHALEYALENGALCVGITNTVGSVIARKT HCGVHINAGCEIGVASTKAYTSQIVVMAILALAIGGDTISNQERREAIIDGLFDLPNK IRDVLKLDQEMKDLAKLLIAEQSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGE MKHGPLALVDENLPIVVIATRDACFSKQQSVIQQLHARKGRLIVMCSKGDAASVCSGG ACRVIEVSYVEDCLQPVVNVVPLQLLAYHLTVLRGYNVDQPRNLAKSVTTQ" mobile_element 30884565..30884609 /note="source:INTACT146_F154_scaffold_7-int 815 860" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 30884610..30884655 /note="source:CACAO_M_S_E52257_F12_scaffold_5 6702 6747" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(30886954..30887017) /note="source:CACAO_Helitron_E81_scaffold_3 99 166" /mobile_element_type="transposon:Helitron" mobile_element 30886964..30888720 /note="source:CACAO_Helitron_E168_scaffold_5 1 1744" /mobile_element_type="transposon:Helitron" gene 30887238..30900291 /locus_tag="TCM_025136" /note="dbxref CacaoGD:Thecc1EG025136" mRNA join(30887238..30887245,30888159..30888209, 30890065..30890392,30890513..30890567,30890646..30890740, 30890826..30890881,30891038..30891113,30891224..30891290, 30891453..30891519,30891672..30891738,30892593..30892676, 30892779..30892820,30892921..30893076,30893871..30893948, 30894414..30894482,30894581..30894646,30894750..30894878, 30895467..30895523,30895978..30896067,30896203..30896268, 30897310..30897378,30897452..30897556,30897693..30897818, 30898864..30898922,30899030..30899066,30899210..30899332, 30899476..30900291) /locus_tag="TCM_025136" /product="Chromatin remodeling factor18 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29889.m003413" /inference="similar to AA sequence:ricco:29889.m003413" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7432t5" mRNA join(30890087..30890392,30890513..30890567, 30890646..30890740,30890826..30890881,30891038..30891113, 30891224..30891290,30891453..30891519,30891672..30891738, 30892593..30892676,30892779..30892820,30892921..30893076, 30893871..30893948,30894204..30894262,30894414..30894482, 30894577..30894646,30894750..30894878,30895464..30895523, 30895978..30896067,30896203..30896268,30897310..30897378, 30897452..30897556,30897693..30897818,30898864..30898922, 30899030..30899066,30899210..30899332,30899476..30900237) /locus_tag="TCM_025136" /product="Chromatin remodeling factor18 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29889.m003413" /inference="similar to AA sequence:ricco:29889.m003413" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7432t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7432t5; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1795t9" CDS join(30890243..30890392,30890513..30890567, 30890646..30890740,30890826..30890881,30891038..30891113, 30891224..30891290,30891453..30891519,30891672..30891738, 30892593..30892676,30892779..30892820,30892921..30893076, 30893871..30893948,30894204..30894262,30894414..30894482, 30894577..30894646,30894750..30894878,30895464..30895523, 30895978..30896067,30896203..30896268,30897310..30897378, 30897452..30897556,30897693..30897818,30898864..30898922, 30899030..30899066,30899210..30899332,30899476..30899628) /locus_tag="TCM_025136" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29889.m003413" /codon_start=1 /product="Chromatin remodeling factor18 isoform 2" /protein_id="EOY09748.1" /db_xref="TAIR:AT1G48310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HWU9" /translation="MELDEWELSAEEWDYLERDAFQKIAQQRNHSSYSSSSFNQNPIT HSPSAKAGASSGTLPSSIAPKTKPADQCSKEQLPKLSVKFILHATGNIAAKFSYKQVL VDAFRKIPKAAWNAQERLWMLPLSSLSSAEKVLCEVSGFKVEVENLHPLVQRAIAAAS ALPDLRVWYDRIPSYIESKLLPFQRDGVRFVLQHGGRALLADEMGLGKTLQAIAVAAC IRDSWPVLVLAPSSLRLHWASMIQQWLNIPPSDIVVIFSQVGGSNKGGFTILSSKCKD GIHLDGLFNIISYDLVPKLENVLMASEFKVVIADESHFLKNAQAKRTTTSLPIIKARC GEASCKQFTKWNRKLCRKLNMQCCLLELQLYPDQLSCSSRQLEALYPDVYRKIYEYGD RYCKGGIFGTYQGASNHEELHNLMKATVMIRRLKKDVLCQLPMKRRQQQVFLELTEKD MKKISSLFQELNLVKGKIKARRSEEEVHSLKLIEKNLINKIYTDSAEAKIPAVLDYLE TVIEAGCKFLIFAHHQPMIEAIHQFLLKKKVGCIRIDGATPASSRQALVNDFQEKDAI RAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQASSVNIYYLLAN DTVDDIIWDVVQNKLETLGQMLDGHENTLEVSTSQQQRSPLKQKTLDSFTKRCNSIDD AGQMLDGHENTLEVSASQQQRSPLKQKTLDSFMKRCNSIDDAEHQSKLKYPRH" CDS join(30890243..30890392,30890513..30890567, 30890646..30890740,30890826..30890881,30891038..30891113, 30891224..30891290,30891453..30891519,30891672..30891738, 30892593..30892676,30892779..30892820,30892921..30893076, 30893871..30893948,30894414..30894482,30894581..30894646, 30894750..30894878,30895467..30895523,30895978..30896067, 30896203..30896268,30897310..30897378,30897452..30897556, 30897693..30897818,30898864..30898922,30899030..30899066, 30899210..30899332,30899476..30899628) /locus_tag="TCM_025136" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29889.m003413" /codon_start=1 /product="Chromatin remodeling factor18 isoform 1" /protein_id="EOY09747.1" /db_xref="TAIR:AT1G48310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HWU9" /translation="MELDEWELSAEEWDYLERDAFQKIAQQRNHSSYSSSSFNQNPIT HSPSAKAGASSGTLPSSIAPKTKPADQCSKEQLPKLSVKFILHATGNIAAKFSYKQVL VDAFRKIPKAAWNAQERLWMLPLSSLSSAEKVLCEVSGFKVEVENLHPLVQRAIAAAS ALPDLRVWYDRIPSYIESKLLPFQRDGVRFVLQHGGRALLADEMGLGKTLQAIAVAAC IRDSWPVLVLAPSSLRLHWASMIQQWLNIPPSDIVVIFSQVGGSNKGGFTILSSKCKD GIHLDGLFNIISYDLVPKLENVLMASEFKVVIADESHFLKNAQAKRTTTSLPIIKKAQ YAMLLTGTPALSRPIELFKQLEALYPDVYRKIYEYGDRYCKGGIFGTYQGASNHEELH NLMKATVMIRRLKKDVLCQLPMKRRQQVFLELTEKDMKKISSLFQELNLVKGKIKARR SEEEVHSLKLIEKNLINKIYTDSAEAKIPAVLDYLETVIEAGCKFLIFAHHQPMIEAI HQFLLKKKVGCIRIDGATPASSRQALVNDFQEKDAIRAAVLSIKAGGVGLTLTAASTV IFAELSWTPGDLIQAEDRAHRIGQASSVNIYYLLANDTVDDIIWDVVQNKLETLGQML DGHENTLEVSTSQQQRSPLKQKTLDSFTKRCNSIDDAGQMLDGHENTLEVSASQQQRS PLKQKTLDSFMKRCNSIDDAEHQSKLKYPRH" gene 30899806..30903600 /locus_tag="TCM_025137" /note="dbxref CacaoGD:Thecc1EG025137" mRNA join(30899806..30899834,30900216..30902553, 30902660..30902740,30903049..30903190,30903550..30903600) /locus_tag="TCM_025137" /product="ATP binding,nucleic acid binding,helicases, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s04770.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026734t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s04770.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.35 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1432t3" CDS 30900620..30902500 /locus_tag="TCM_025137" /note="paralog of Thecc1EG026734t1" /codon_start=1 /product="ATP binding,nucleic acid binding,helicases, putative" /protein_id="EOY09749.1" /db_xref="Phytozome:POPTR_0005s04770.1" /db_xref="TAIR:AT1G12700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I898" /translation="MMGRWKGALRSTTHLQQMGNAKSTISILFLLFTRRPILHLKRAG CFYFQISCSYATISSPDTETSVNVRGKGKHQFQFDNIGEALTLFNRMIHSHPRPSIIE FSRLLGAVVRIKDYVTAVSLIRQMELLGIQHNVYTLTILINCFCHLQCVDFGFSLLGK MFKLGLQPNVITFSTLINGLCIVSKVARAVMLFNDMVREGYQPNLISYSTIVNGLCKI GDTSGAIRLLRMMEQRGCAPNIVTYTTIIDSLCKDENVTEALKLLSEMRGKGIPSNIV TYSSLIHAMCNLGQWKEVTSLLKEMVANNVMPNVVTCNILLDALCKEGLVSEAHDVVK KMSQEGVGSDIVTYNTLMDSCCLRSEIYEARKIFDLLVGRGCAPNIVSYNALFSGYCK AKRVDEAMNLFHEISDKGFIPDVVTYTILINGMCEIGRLSAAQELFKEMSANGQIPDQ MTYSALLDGLCKHGHVHEALEFFQAMHNSGLEPSIFHYSILLDGLCQVREFKLARQLF RQIFAKALHPNIYVYTIMIKALFEEGLPNEAQELFRKMEEGGCLANSCSYNTMVQGFL QNNDMSSVMQILHEMVDKGFSLDAPMAVMLVDFLSTDETNQTFPEVVYKNIEDYQIVN VK" mobile_element 30904791..30905071 /note="source:scaffold_2_CACTA_0244 14086 14394" /mobile_element_type="transposon:TIR/CACTA" gene 30905045..30911734 /locus_tag="TCM_025138" /note="dbxref CacaoGD:Thecc1EG025138" mRNA join(30905045..30905901,30907365..30909182, 30909600..30910785,30910892..30911734) /locus_tag="TCM_025138" /product="KRR1 family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g02890.1" /inference="similar to AA sequence:Phytozome:Glyma09g02890.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:PASA:2:TSA:puevd3b024318t1a3; alternateUTRof:Thecc1EG025138t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc414t3" mRNA join(30905045..30905901,30907365..30909182, 30909600..30909728,30910221..30910368,30910624..30910785, 30910892..30910968) /locus_tag="TCM_025138" /product="KRR1 family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g02890.1" /inference="similar to AA sequence:Phytozome:Glyma09g02890.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc414t3" mRNA join(30905045..30905901,30906040..30906103, 30907365..30909182,30909600..30910128) /locus_tag="TCM_025138" /product="KRR1 family protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g02890.1" /inference="similar to AA sequence:Phytozome:Glyma09g02890.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:PASA:2:TSA:puevd3b024318t1a2; inference alignment:Newbler:10:TSA:cgbaL_g01098t00001" CDS join(30905629..30905901,30907365..30909149) /locus_tag="TCM_025138" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="KRR1 family protein, putative isoform 1" /protein_id="EOY09750.1" /db_xref="Phytozome:Glyma09g02890.1" /db_xref="TAIR:AT3G24080.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7MKE5" /translation="MGVKLFKDNEDAQNDDISKIEINKEYARRFEHNKKREDLQRYEE LKKRGHVEESDDESDEDSSSSDGEDEGFDDKTTLRKKDEDFFKALIMVRSHDPRLKEK DVKLFESDDDESSKQEEENEPKEKKDKKAMYLKDVVAKHLMEEGPDFQQHVAVNDLKK KVKSYDEEQEEIKKALLDATEEVDNEDDGDFLRVKETKGKDEGEKEDLGDGEFSKKLE EYFGEDEKMDENTKFLKEFFKNKMWIDKEKTAGDLVVDNEAVDDALRDEEEIERQEGY ELEYNFRHEENAEDRVIGYSRKVEGSVRKKESKRKVQRERKEERMRIAEMERKEELKH LKNLKKEEIKERMKKVMEIAGIKRDEECPFSAKDLEEEFDPEEYDKMMKAAFDEKYYD DDDMEFNSDSDGIEKPDFDKEDELLGLPKGWDVLESHEGFLAARERNKHKLQKGGGND TEGEEEMGEEEKGELKNEEEEEEEEEDDDDDEGKEHKNEDEEDDEERKEEEIEEGKRK RKRKLSIVQKALQEMWEEFYNLDYEDTIGDLKTRFKYVKTKPNRYGLKPKELLTLDEK ELNQYVSLKKLAPYTDKEWKVPNSKRYQQKLRIRELLKEKQNYQKAGKKRSRDAAEQS TSRIGGGKEDKKAKLEDSDGNMLNLSNQGKKKRRQASNISESRRKAYGMISSKPKKNK LKH" CDS join(30905629..30905901,30907365..30909149) /locus_tag="TCM_025138" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="KRR1 family protein, putative isoform 1" /protein_id="EOY09751.1" /db_xref="Phytozome:Glyma09g02890.1" /db_xref="TAIR:AT3G24080.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7MKE5" /translation="MGVKLFKDNEDAQNDDISKIEINKEYARRFEHNKKREDLQRYEE LKKRGHVEESDDESDEDSSSSDGEDEGFDDKTTLRKKDEDFFKALIMVRSHDPRLKEK DVKLFESDDDESSKQEEENEPKEKKDKKAMYLKDVVAKHLMEEGPDFQQHVAVNDLKK KVKSYDEEQEEIKKALLDATEEVDNEDDGDFLRVKETKGKDEGEKEDLGDGEFSKKLE EYFGEDEKMDENTKFLKEFFKNKMWIDKEKTAGDLVVDNEAVDDALRDEEEIERQEGY ELEYNFRHEENAEDRVIGYSRKVEGSVRKKESKRKVQRERKEERMRIAEMERKEELKH LKNLKKEEIKERMKKVMEIAGIKRDEECPFSAKDLEEEFDPEEYDKMMKAAFDEKYYD DDDMEFNSDSDGIEKPDFDKEDELLGLPKGWDVLESHEGFLAARERNKHKLQKGGGND TEGEEEMGEEEKGELKNEEEEEEEEEDDDDDEGKEHKNEDEEDDEERKEEEIEEGKRK RKRKLSIVQKALQEMWEEFYNLDYEDTIGDLKTRFKYVKTKPNRYGLKPKELLTLDEK ELNQYVSLKKLAPYTDKEWKVPNSKRYQQKLRIRELLKEKQNYQKAGKKRSRDAAEQS TSRIGGGKEDKKAKLEDSDGNMLNLSNQGKKKRRQASNISESRRKAYGMISSKPKKNK LKH" CDS join(30906062..30906103,30907365..30909149) /locus_tag="TCM_025138" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="KRR1 family protein, putative isoform 3" /protein_id="EOY09752.1" /db_xref="Phytozome:Glyma09g02890.1" /db_xref="TAIR:AT3G24080.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7MKE5" /translation="MYKVFQALGLVSVLVRSHDPRLKEKDVKLFESDDDESSKQEEEN EPKEKKDKKAMYLKDVVAKHLMEEGPDFQQHVAVNDLKKKVKSYDEEQEEIKKALLDA TEEVDNEDDGDFLRVKETKGKDEGEKEDLGDGEFSKKLEEYFGEDEKMDENTKFLKEF FKNKMWIDKEKTAGDLVVDNEAVDDALRDEEEIERQEGYELEYNFRHEENAEDRVIGY SRKVEGSVRKKESKRKVQRERKEERMRIAEMERKEELKHLKNLKKEEIKERMKKVMEI AGIKRDEECPFSAKDLEEEFDPEEYDKMMKAAFDEKYYDDDDMEFNSDSDGIEKPDFD KEDELLGLPKGWDVLESHEGFLAARERNKHKLQKGGGNDTEGEEEMGEEEKGELKNEE EEEEEEEDDDDDEGKEHKNEDEEDDEERKEEEIEEGKRKRKRKLSIVQKALQEMWEEF YNLDYEDTIGDLKTRFKYVKTKPNRYGLKPKELLTLDEKELNQYVSLKKLAPYTDKEW KVPNSKRYQQKLRIRELLKEKQNYQKAGKKRSRDAAEQSTSRIGGGKEDKKAKLEDSD GNMLNLSNQGKKKRRQASNISESRRKAYGMISSKPKKNKLKH" gene complement(30910541..30911675) /locus_tag="TCM_025139" /note="dbxref CacaoGD:Thecc1EG025139" mRNA complement(join(30910541..30910917,30911033..30911233, 30911560..30911675)) /locus_tag="TCM_025139" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.79 coverage" CDS complement(join(30910710..30910917,30911033..30911232)) /locus_tag="TCM_025139" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09753.1" /translation="MQWQIVQRHEFAENGEGSFQANNPLSSVQDVTGCKKMPTPASHH AILVFIIPVLTAFIQVKFQTGDHLTDINIMLPETIQSILYTLYVQLSNSANIQKDSSK HHANGLRYTSCPTMPCSEDESTFASNFHRCNLI" mobile_element complement(30912172..30913302) /note="source:INTACT135F_F90_scaffold_2-int 12863 14004" /mobile_element_type="retrotransposon:LTR/Copia" gene 30913467..30922654 /locus_tag="TCM_025140" /note="dbxref CacaoGD:Thecc1EG025140" mRNA join(30913467..30913859,30918669..30918722, 30918816..30918982,30919068..30919377,30919492..30919563, 30920090..30920119) /locus_tag="TCM_025140" /product="Biotin carboxyl carrier protein subunit of of Het-ACCase (BCCP1), putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s08170.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014175t1" /inference="similar to AA sequence:ricco:29929.m004560" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc610t10; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc610t3; inference alignment:Newbler:10:TSA:cgbaP2_g11561t00001" mRNA join(30913473..30913859,30918669..30918722, 30918816..30918982,30919068..30919377,30919492..30919563, 30922127..30922192,30922294..30922517) /locus_tag="TCM_025140" /product="Biotin carboxyl carrier protein subunit of of Het-ACCase (BCCP1), putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s08170.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014175t1" /inference="similar to AA sequence:ricco:29929.m004560" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g11561t00001" mRNA join(30913531..30913859,30918669..30918982, 30919068..30919377,30919492..30919563,30922127..30922192, 30922294..30922654) /locus_tag="TCM_025140" /product="Biotin carboxyl carrier protein subunit of of Het-ACCase (BCCP1), putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s08170.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014175t1" /inference="similar to AA sequence:ricco:29929.m004560" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7397t1; inference alignment:Newbler:10:TSA:cgbaP2_g11561t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc610t3" CDS join(30913713..30913859,30918669..30918982, 30919068..30919377,30919492..30919563,30922127..30922192, 30922294..30922317) /locus_tag="TCM_025140" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29929.m004560; paralog of Thecc1EG014175t1" /codon_start=1 /product="Biotin carboxyl carrier protein subunit of of Het-ACCase (BCCP1), putative isoform 3" /protein_id="EOY09756.1" /db_xref="TAIR:AT5G16390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RM56" /translation="MASSLSTTASASFSSVAKTAATLPHSTNLPLSKVSFRFSPKPNF GLFSKGLQHSQNCSIVVKAQLNEVSFFKWFWLEDLFSNFRSFLDTLLGSSVAFKVSVD GSSKASATSPDKSGPPTAEAKDAKPSSDASPPALATEESISEFLNQVSSLVKLVDSRD IVELQLKQLDCELTIRKKEAMSQPPSAAPVVMMQSPSLPPVMPPNPAVPAPAPSGPVS PAPTPAAPKSAKSSLPPLKCPMAGTFYRNPAPGEPPFVKVGDKVQKGQVICIIEAMKL MNEIEADQSGTIVEILVEDGKSVSVDMPLFVIEP" CDS join(30913713..30913859,30918669..30918722, 30918816..30918982,30919068..30919377,30919492..30919563, 30922127..30922192,30922294..30922317) /locus_tag="TCM_025140" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29929.m004560; paralog of Thecc1EG014175t1" /codon_start=1 /product="Biotin carboxyl carrier protein subunit of of Het-ACCase (BCCP1), putative isoform 1" /protein_id="EOY09754.1" /db_xref="TAIR:AT5G16390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RM56" /translation="MASSLSTTASASFSSVAKTAATLPHSTNLPLSKVSFRFSPKPNF GLFSKGLQHSQNCSIVVKAQLNEVSVDGSSKASATSPDKSGPPTAEAKDAKPSSDASP PALATEESISEFLNQVSSLVKLVDSRDIVELQLKQLDCELTIRKKEAMSQPPSAAPVV MMQSPSLPPVMPPNPAVPAPAPSGPVSPAPTPAAPKSAKSSLPPLKCPMAGTFYRNPA PGEPPFVKVGDKVQKGQVICIIEAMKLMNEIEADQSGTIVEILVEDGKSVSVDMPLFV IEP" CDS join(30913713..30913859,30918669..30918722, 30918816..30918982,30919068..30919377,30919492..30919563, 30920090..30920095) /locus_tag="TCM_025140" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29929.m004560; paralog of Thecc1EG014175t1" /codon_start=1 /product="Biotin carboxyl carrier protein subunit of of Het-ACCase (BCCP1), putative isoform 2" /protein_id="EOY09755.1" /db_xref="TAIR:AT5G16390.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RM56" /translation="MASSLSTTASASFSSVAKTAATLPHSTNLPLSKVSFRFSPKPNF GLFSKGLQHSQNCSIVVKAQLNEVSVDGSSKASATSPDKSGPPTAEAKDAKPSSDASP PALATEESISEFLNQVSSLVKLVDSRDIVELQLKQLDCELTIRKKEAMSQPPSAAPVV MMQSPSLPPVMPPNPAVPAPAPSGPVSPAPTPAAPKSAKSSLPPLKCPMAGTFYRNPA PGEPPFVKVGDKVQKGQVICIIEAMKLMNEIER" mobile_element 30914887..30915378 /note="source:CACAO_MITE_S141_scaffold_5 1 492" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(30922225..30922281) /note="source:CACAO_M_E44848_F172_scaffold_6 1877 1935" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 30923853..30926060 /locus_tag="TCM_025141" /note="dbxref CacaoGD:Thecc1EG025141" mRNA join(30923853..30924472,30925389..30925502, 30925601..30926060) /locus_tag="TCM_025141" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29929.m004559" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002665t1" /inference="similar to AA sequence:ricco:29929.m004559" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc806t6; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc806t6" mRNA join(30923853..30924472,30925392..30926060) /locus_tag="TCM_025141" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29929.m004559" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002665t1" /inference="similar to AA sequence:ricco:29929.m004559" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc806t4; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc806t6; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc887t5" CDS join(30923990..30924472,30925389..30925451) /locus_tag="TCM_025141" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29929.m004559; paralog of Thecc1EG002665t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY09757.1" /db_xref="TAIR:AT5G16380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SPM9" /translation="MGFSIFSLFPALSLTFLFISLSFPTAQSSPSSIYDHLERNGLPM GLLPKGITEFSIDPETHRFQVNLTEPCNAKFENQLHYDFIISGVLSFGKIANLSGVTQ QELFLWFPVISIRVDDPSSGLINFDVGVVDKQFSLSLFESPRDCTAVDPDDSHTQSDS QKPSELLGNGIVEGDMLKAVS" CDS join(30923990..30924472,30925392..30925451) /locus_tag="TCM_025141" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29929.m004559; paralog of Thecc1EG002665t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY09758.1" /db_xref="TAIR:AT5G16380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SPM9" /translation="MGFSIFSLFPALSLTFLFISLSFPTAQSSPSSIYDHLERNGLPM GLLPKGITEFSIDPETHRFQVNLTEPCNAKFENQLHYDFIISGVLSFGKIANLSGVTQ QELFLWFPVISIRVDDPSSGLINFDVGVVDKQFSLSLFESPRDCTAVDPDDSHTQSDS QPSELLGNGIVEGDMLKAVS" gene 30928553..30933611 /locus_tag="TCM_025143" /note="dbxref CacaoGD:Thecc1EG025143" mRNA join(30928553..30930773,30933404..30933611) /locus_tag="TCM_025143" /product="Phytochrome kinase substrate 4, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s09230.1" /inference="similar to AA sequence:Phytozome:POPTR_0005s09230.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7378t1" CDS 30929037..30930530 /locus_tag="TCM_025143" /codon_start=1 /product="Phytochrome kinase substrate 4, putative" /protein_id="EOY09759.1" /db_xref="Phytozome:POPTR_0005s09230.1" /db_xref="TAIR:AT5G04190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PE57" /translation="MDQPRVMTTVNGGGAGSRQHALELKSSLSYVSFPHRKSTPGVDV SADEDTEISIFDAQRYFNESNNDARVCKRVSPLNLPNLDRISSDGCDLSALSRFSSAS SATDGYGFGRTYRVRSFHATPTASSEASWNSQTGLLSNPPCAIAVSMTMKNPTIDGKK KESATGTGTIKWLWGRRCPCSSKKSVQVEPKTSLSLNQKLKLEDQKSLGTKSSSWGDK REEILLACNPQRISLENQFHSSSLGQRVVASATARPLMISNGSGTAGFTFPVLNQQPI SSHVKMAVNRNNTNSLEVDDEDTARDSLEVFRPSEESSSISVSKKLASRTTITDDDVG SDTSSDLFEIESFSTTTQGQTTPYAMYHLRDALDEASSSFNARRSIAGPTNGSGFGCQ YSPVMTECYEPSEASIDWSVTTAEGFERGSVGVSEAEEVSIAAHGNGGKKKSGNGLLS CRCEKAVSVGPNPVKYVPPQGQATTTSKHVGNVNKPPLARLSLPFAA" mobile_element 30935931..30936661 /note="source:scaffold_4_CACTA_0482 16796 17515" /mobile_element_type="transposon:TIR/CACTA" mobile_element 30936652..30936910 /note="source:INTACT1604F_F75_scaffold_10-int 444 702" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(30938433..30939361) /locus_tag="TCM_025144" /note="dbxref CacaoGD:Thecc1EG025144" mRNA complement(join(30938433..30938832,30938912..30939075, 30939188..30939361)) /locus_tag="TCM_025144" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004707t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.36 coverage" CDS complement(join(30938661..30938832,30938912..30939075, 30939188..30939337)) /locus_tag="TCM_025144" /note="paralog of Thecc1EG004707t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09760.1" /translation="MQVINLMRQFEVLKMKEDEIVKDYVDKLMKIVNQVRLIGAELSD ARIVKKEIEQIRLEEHIETALPARFKDKTVLESNGKKSYGDKKDKDRKPITNQEVQGE KHGSCNKLGHVKRVCKNKTNQQNQQAQVTEEVETTKELLFMASEGILEKFSETWLLDS A" gene 30939903..30944166 /locus_tag="TCM_025145" /note="dbxref CacaoGD:Thecc1EG025145" mRNA join(30939903..30940286,30941404..30941489, 30942405..30944166) /locus_tag="TCM_025145" /product="Kinase superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30128.m008790.3" /inference="similar to AA sequence:ricco:30128.m008790" /note="quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09896t00001" CDS join(30940184..30940286,30941404..30941489, 30942405..30943475) /locus_tag="TCM_025145" /note="dbxref ricco:30128.m008790" /codon_start=1 /product="Kinase superfamily protein, putative" /protein_id="EOY09761.1" /db_xref="TAIR:AT3G57710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I7Q8" /translation="MQNLETKLWLKAMQRNAMVIQKTKGRRENNSRLQVQTWLKLLQF LLKPKLLSNIPTSETNHLELWAGRMTLLSRIRTILKSKEEKAFIRNGSILLQELVAFC NGKCNPICGFSAKELKRATNNYDLRRVLHKNRFYKFYKGLLRDQPVLIKNFKGNFERC EVVFNEIVVASLMSVHKNVLKLLGCCLETKVPTLVFEFAESGNLGDQVSRQNNNCHFQ PLSWRCRLKIAMDIANVVAYLHTAFPQPIIHRDIRCLNIFLSEDCTAKLSDFSVSRSF SDDEVDVKDEVPEIMGLTTAEYMAKQDVCSVGILMLILLTGQKEICKDPLENNKRIYI ADYVRKYDFDEILDPMIFKEMLLEEVQQVEAFKALVMNCICESAGDRPTMTDVAKELR RINQRSFTQDIVHITNCRDSSSPTNID" mobile_element complement(30944306..30944613) /note="source:INTACT588_F39_scaffold_7-int 2815 3124" /mobile_element_type="retrotransposon:LTR/Copia" gene 30944498..30948850 /locus_tag="TCM_025146" /note="dbxref CacaoGD:Thecc1EG025146" mRNA join(30944498..30944564,30945662..30946642, 30947104..30947174,30947602..30948850) /locus_tag="TCM_025146" /product="Kinase superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400024364.2" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.15 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7392t1" CDS join(30945667..30946642,30947104..30947174, 30947602..30948159) /locus_tag="TCM_025146" /codon_start=1 /product="Kinase superfamily protein, putative" /protein_id="EOY09762.1" /db_xref="TAIR:AT3G57750.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I7Q8" /translation="MNWCFKVKKRSNDETFFMENGAMLLEELIAFCNGKSNPIQNFSA EELKIATNNYGEGRCFLRSHDNFNSIVDYSETVLQMLTETYPERTWGADYYNLYEGYL KDRPVSVKKYISIDVLSKIFKDIAIGSQMSAHKNVLKLLGCCLETKYPIIVYEFVGTR ILSDFLCDANGAQCQPLPWRCRLKIAVDLASAVEYLHTAFSKPVILHRDIRSSNVILD QDNVPKLIDFALSISIPECQLHVEEFESKYLLTLDVFNFGVLLLQLLSGKKKLEHLPF TIRMDSLEHLAENNQSSGVIDDRIIEEGIEQQQLLDFARLVRRCFSEETGTYLYYIWL NFDNCMFGKVRGKPRVENCNGLANAVAYLHTALSRPFIHPDIRSSNTILDQDNVPKLI DFSLSNSIHEGQSHVEGIVGVGGLVWGVAWGGFVVGWRVSTFAPDQALMGYLTEKADV HSFGKILFQLLRGQRPSYYINVDSIVLDSVKHWVENNQFSRVVDHRIAIEGILQEQLL DFTTLAREGEERPKIIKVARELSLFN" gene complement(30948274..31066866) /locus_tag="TCM_025147" /note="dbxref CacaoGD:Thecc1EG025147" mRNA complement(join(30948274..30948659,30949574..30949658, 30949808..30949946,30950171..30950271,30950710..30952873)) /locus_tag="TCM_025147" /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:frave:gene33991.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026736t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s02630.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.28 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7402t3" gene 30948923..30949877 /locus_tag="TCM_025148" /note="dbxref CacaoGD:Thecc1EG025148" mRNA 30948923..30949877 /locus_tag="TCM_025148" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc191t27_C1" CDS 30949457..30949735 /locus_tag="TCM_025148" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09767.1" /translation="MMRSERTKTNMLRVEKEKMQIALAWPYVFHACIAFFADDLTNMY SKSHNNSFRRTHCRGRQHQRHYIPSRFRDVARQKSYDVIDKIIYCKYV" mRNA complement(join(30949629..30949658,30950171..30950271, 30950710..30952200,31066712..31066866)) /locus_tag="TCM_025147" /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:frave:gene33991.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026734t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s02630.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.43 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc191t29; alternateUTRof:Thecc1EG025147t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7402t3" mRNA complement(join(30949629..30949658,30949808..30949946, 30950171..30950271,30950710..30952200,31066712..31066866)) /locus_tag="TCM_025147" /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:frave:gene33991.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026734t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s02630.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.46 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc191t25; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7402t3" mRNA complement(join(30949673..30949946,30950171..30950271, 30950408..30950568,30950710..30952613)) /locus_tag="TCM_025147" /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 3" /inference="alignment:exonerate- protein:2:frave:gene33991.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026736t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s02630.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.40 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7402t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7402t3" CDS complement(30950903..30952759) /locus_tag="TCM_025147" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG026736t1" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 1" /protein_id="EOY09763.1" /db_xref="Phytozome:POPTR_0016s02630.1" /db_xref="TAIR:AT1G62930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9P5D9" /translation="MMVRGWKSASLFSSSAFDLLQQLESGNPKSVNSLPFTLFNYFSV LNKKRALFYFQNSYFSTTHRKKSEYVFDNIDDALNKFYQMVGMHPRPSVMKFDQLVGA IVRMKHYPTALSLIRQMELLGIHPDVCTLNISLNCFCRLHRLDFGFSVFGKMLKLGIQ PSIVTFFTLINGLCIGGEVAQAVRLFNDMVQEEYKPNVIHYNTIVNCLCKISDTNGAI RFLKVMKKRGCEPNTTTYSIIIDGLCKDKHAAEALKLFSEMKGKGIPPTVVTYNSLIH AMCNSCQWKVVTRLLNEMVANNCKPDVVTYNILVDALCKGGRVLEAQDIIERMIQLGF EPDMFTYNSLMNGYCGRGEMDEARKLLNFLVSSGYGVDAFTYNTVINGYCKARRMNEA VELFHEMTQNGSIPDTVTYNTLISGMSLIGRLSAAQELFKEMGAHGTVPDKITYFTLL DGLCKHGQINDALGLFHVMQNSGLEPDIVHYNILINGLCQVGQLKVARKLFYALTVRG LHTNVYTYNIMIKGLCKEGLPNEAYKLLRKMEVDGCMPNSCSYNTMIQGCLQNNDISR VAQILHEMVKKGFSAYISTAAMLVDLLSSNSTGESFCALLRNCEDYQSIYMK" CDS complement(30950903..30952510) /locus_tag="TCM_025147" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG026736t1" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 3" /protein_id="EOY09765.1" /db_xref="Phytozome:POPTR_0016s02630.1" /db_xref="TAIR:AT1G62930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I898" /translation="MVGMHPRPSVMKFDQLVGAIVRMKHYPTALSLIRQMELLGIHPD VCTLNISLNCFCRLHRLDFGFSVFGKMLKLGIQPSIVTFFTLINGLCIGGEVAQAVRL FNDMVQEEYKPNVIHYNTIVNCLCKISDTNGAIRFLKVMKKRGCEPNTTTYSIIIDGL CKDKHAAEALKLFSEMKGKGIPPTVVTYNSLIHAMCNSCQWKVVTRLLNEMVANNCKP DVVTYNILVDALCKGGRVLEAQDIIERMIQLGFEPDMFTYNSLMNGYCGRGEMDEARK LLNFLVSSGYGVDAFTYNTVINGYCKARRMNEAVELFHEMTQNGSIPDTVTYNTLISG MSLIGRLSAAQELFKEMGAHGTVPDKITYFTLLDGLCKHGQINDALGLFHVMQNSGLE PDIVHYNILINGLCQVGQLKVARKLFYALTVRGLHTNVYTYNIMIKGLCKEGLPNEAY KLLRKMEVDGCMPNSCSYNTMIQGCLQNNDISRVAQILHEMVKKGFSAYISTAAMLVD LLSSNSTGESFCALLRNCEDYQSIYMK" CDS complement(30950903..30952195) /locus_tag="TCM_025147" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG026734t1" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 2" /protein_id="EOY09764.1" /db_xref="Phytozome:POPTR_0016s02630.1" /db_xref="TAIR:AT1G62930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I898" /translation="MVQEEYKPNVIHYNTIVNCLCKISDTNGAIRFLKVMKKRGCEPN TTTYSIIIDGLCKDKHAAEALKLFSEMKGKGIPPTVVTYNSLIHAMCNSCQWKVVTRL LNEMVANNCKPDVVTYNILVDALCKGGRVLEAQDIIERMIQLGFEPDMFTYNSLMNGY CGRGEMDEARKLLNFLVSSGYGVDAFTYNTVINGYCKARRMNEAVELFHEMTQNGSIP DTVTYNTLISGMSLIGRLSAAQELFKEMGAHGTVPDKITYFTLLDGLCKHGQINDALG LFHVMQNSGLEPDIVHYNILINGLCQVGQLKVARKLFYALTVRGLHTNVYTYNIMIKG LCKEGLPNEAYKLLRKMEVDGCMPNSCSYNTMIQGCLQNNDISRVAQILHEMVKKGFS AYISTAAMLVDLLSSNSTGESFCALLRNCEDYQSIYMK" CDS complement(30950903..30952195) /locus_tag="TCM_025147" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG026734t1" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 2" /protein_id="EOY09766.1" /db_xref="Phytozome:POPTR_0016s02630.1" /db_xref="TAIR:AT1G62930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I898" /translation="MVQEEYKPNVIHYNTIVNCLCKISDTNGAIRFLKVMKKRGCEPN TTTYSIIIDGLCKDKHAAEALKLFSEMKGKGIPPTVVTYNSLIHAMCNSCQWKVVTRL LNEMVANNCKPDVVTYNILVDALCKGGRVLEAQDIIERMIQLGFEPDMFTYNSLMNGY CGRGEMDEARKLLNFLVSSGYGVDAFTYNTVINGYCKARRMNEAVELFHEMTQNGSIP DTVTYNTLISGMSLIGRLSAAQELFKEMGAHGTVPDKITYFTLLDGLCKHGQINDALG LFHVMQNSGLEPDIVHYNILINGLCQVGQLKVARKLFYALTVRGLHTNVYTYNIMIKG LCKEGLPNEAYKLLRKMEVDGCMPNSCSYNTMIQGCLQNNDISRVAQILHEMVKKGFS AYISTAAMLVDLLSSNSTGESFCALLRNCEDYQSIYMK" mobile_element complement(30953203..30955295) /note="source:INTACT60_F127_scaffold_9-int 13952 16140" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(30955764..30956591) /locus_tag="TCM_025150" /note="dbxref CacaoGD:Thecc1EG025150" mRNA complement(30955764..30956591) /locus_tag="TCM_025150" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.24 coverage" CDS complement(30956249..30956464) /locus_tag="TCM_025150" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09768.1" /translation="MSSKLNNKDEPFKMMNMWRVSRWLGVETKKWTLVKGGMTKTRRM KEETMIENKRKLRLSFSHARIAENKII" mobile_element 30956628..30957322 /note="source:CACAO_M_S_E5285_F300_scaffold_1 17240 17942" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(30957904..30960564) /locus_tag="TCM_025151" /note="dbxref CacaoGD:Thecc1EG025151" mRNA complement(join(30957904..30958288,30959223..30959648, 30960393..30960564)) /locus_tag="TCM_025151" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1191t3_C1" CDS complement(join(30958208..30958288,30959223..30959648, 30960393..30960530)) /locus_tag="TCM_025151" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09769.1" /translation="MTLLVNVNKYYKKKRERVGCAKALRWVKFFTLTERRRRQSSRRR VWKRRFVNKRMVTKLMQLKVEMEEVREQQICIKEGQRKVKENFEAVESECRNLHAETM IIMKQSACTRLRLCIMFQILKARENNDFAKAAALTQALRLVPYSPFLFFDMPIHFISK GHASWLKAIAQITSHPSNNTLQLKYILLRSKTRISKLWNQVLGHLANETLENIC" gene 30963618..30964612 /locus_tag="TCM_025152" /note="dbxref CacaoGD:Thecc1EG025152" mRNA join(30963618..30963641,30963769..30963874, 30963994..30964256,30964362..30964612) /locus_tag="TCM_025152" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025157t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc2010t3_C2" CDS join(30963818..30963874,30963994..30964256, 30964362..30964413) /locus_tag="TCM_025152" /note="paralog of Thecc1EG025157t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09770.1" /translation="MAKRKASEVKVPRNSMKLEELEDFVKQMEEETVKMRAKKIRMRK LEKKSKVEIKRIEKKCNQLRKVKRRLVEESAWAQVCSDIMHGIVSAEDEGDAITVDLL TRSLRELMMPRQNQENQPPID" mobile_element complement(30967776..30973973) /note="source:scaffold_5_CACTA_0613 4670 10867" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(30973971..30975119) /note="source:scaffold_5_CACTA_0613 3590 4737" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(30975094..30975348) /note="source:CACAO_Mutator_E206_scaffold_1 5714 5969" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(30975189..30975711) /note="source:scaffold_6_CACTA_0712 3418 3964" /mobile_element_type="transposon:TIR/CACTA" gene 30976528..30977248 /locus_tag="TCM_025154" /note="dbxref CacaoGD:Thecc1EG025154" mRNA 30976528..30977248 /locus_tag="TCM_025154" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.50 coverage" CDS 30976925..30977173 /locus_tag="TCM_025154" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09771.1" /translation="MDFTLCSWESDESGSKSISAKGLGTRRGSTKWVSPSALGKVTSQ PANRFQPRVSAQEGDPPNGVQPLLSAQEGEAKLRIWEK" mobile_element 30977128..30978730 /note="source:scaffold_3_CACTA_0378 1787 2511" /mobile_element_type="transposon:TIR/CACTA" gene complement(30977351..30986261) /locus_tag="TCM_025155" /note="dbxref CacaoGD:Thecc1EG025155" mRNA complement(join(30977351..30977533,30979011..30979242, 30985633..30986261)) /locus_tag="TCM_025155" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s11920.1" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.26 coverage" mobile_element complement(30979767..30979866) /note="source:scaffold_5_CACTA_0612 12578 12691" /mobile_element_type="transposon:TIR/CACTA" mobile_element 30980415..30981116 /note="source:CACAO_M_E5899_F5_scaffold_2 19647 20346" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(30981359..30982673) /note="source:INTACT563_F255_scaffold_10-int 1169 2473" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(30982786..30983406) /note="source:CACAO_M_E35674_F13_scaffold_5 3312 3887" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(30982926..30983447) /note="source:INTACT409F_F47_scaffold_4-int 15748 16274" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(30983390..30983458) /note="source:scaffold_5_CACTA_0612 8683 8752" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(30983679..30983790) /note="source:scaffold_5_CACTA_0612 6696 6819" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(30984389..30985899) /note="source:CACAO_Again_on_E207_scaffold_9 11 1862" /mobile_element_type="transposon:TIR/hAT" CDS complement(30985849..30986169) /locus_tag="TCM_025155" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09772.1" /translation="MHHYWRKAQAVAQTDPSTRVKRGKTDSSASEIIREVHVSRTTTS AQRRDALGAPRTGDQRNQPNRYRLSGWSYRADQGGWRLCILASRKGNGYPITRYFGIS YPII" gene complement(30986308..30987441) /locus_tag="TCM_025156" /note="dbxref CacaoGD:Thecc1EG025156" mRNA complement(join(30986308..30986504,30986914..30987179, 30987271..30987441)) /locus_tag="TCM_025156" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s11920.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025158t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03699t00001" CDS complement(join(30986441..30986504,30986914..30987179, 30987271..30987282)) /locus_tag="TCM_025156" /note="paralog of Thecc1EG025158t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09773.1" /translation="MNTRRRKTVKLNATITRLKREMQEIREDQNRIREGRRPVKEKFD DVLSECDETELITRQSICTRLRLTLMFQILKARQNNDFAKAAQLTTSLRELIAQQENE SLQQSDGPKSK" gene 30989860..30990762 /locus_tag="TCM_025157" /note="dbxref CacaoGD:Thecc1EG025157" mRNA join(30989860..30990020,30990140..30990402, 30990508..30990762) /locus_tag="TCM_025157" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025152t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7512t1" CDS join(30989964..30990020,30990140..30990402, 30990508..30990559) /locus_tag="TCM_025157" /note="paralog of Thecc1EG025152t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09774.1" /translation="MAKRKASEVKVPRNSMKLEELEDFVKQMEEETVKMRAKKIRMRK LEKKSKVELKRIEKKCNQLRKVKRQLVEESAWAQVCSDIMLGIVSAEGEGDAITVDLL TRSLRELMMPRQNQENQPPID" gene complement(30993724..30995723) /locus_tag="TCM_025158" /note="dbxref CacaoGD:Thecc1EG025158" mRNA complement(join(30993724..30994744,30995161..30995438, 30995538..30995723)) /locus_tag="TCM_025158" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s15180.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025156t1" /note="quality class is strong-utrpoor, express is strong, homology is paralog medium, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g04485t00001" CDS complement(join(30994681..30994744,30995161..30995438, 30995538..30995681)) /locus_tag="TCM_025158" /note="paralog of Thecc1EG025156t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09775.1" /translation="MFVCSSQTRCCPRERKLRGRKAAIALKGVKRRLLISQRLSKPPP MNTRRRKTVKINATVAQLKREMKEIREEQNSIREGQRQVKKKFDDVLSECEKLRDETE LITQQSICTRLRLTLMFQILKARQNNDFTKAAQLTTSLRELIAQQKNQSLHQSDGAKG K" mobile_element complement(30997023..30997384) /note="source:CACAO_MITE_S153_scaffold_6 1 368" /mobile_element_type="transposon:TIR/MITE" gene complement(30998162..31014725) /locus_tag="TCM_025159" /note="dbxref CacaoGD:Thecc1EG025159" mRNA complement(join(30998162..30999802,31000630..31000746, 31000826..31000937,31001200..31001351,31002436..31002507, 31002666..31002731,31003752..31003880,31004354..31004462, 31006263..31006342,31007591..31007716,31007802..31007852, 31008099..31008281,31008373..31008459,31008578..31008688, 31008774..31008878,31009356..31009527,31009613..31009785, 31009874..31009946,31010808..31011010,31014030..31014122, 31014203..31014466,31014636..31014725)) /locus_tag="TCM_025159" /product="P-type ATPase transporter" /inference="alignment:exonerate- protein:2:ricco:30225.m001693" /inference="similar to AA sequence:ricco:30225.m001693" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7704t3" CDS complement(join(30998687..30999802,31000630..31000746, 31000826..31000937,31001200..31001351,31002436..31002507, 31002666..31002731,31003752..31003880,31004354..31004462, 31006263..31006342,31007591..31007716,31007802..31007852, 31008099..31008281,31008373..31008459,31008578..31008688, 31008774..31008878,31009356..31009527,31009613..31009785, 31009874..31009946,31010808..31011010,31014030..31014122, 31014203..31014451)) /locus_tag="TCM_025159" /note="dbxref ricco:30225.m001693" /codon_start=1 /product="P-type ATPase transporter" /protein_id="EOY09776.1" /db_xref="TAIR:AT5G23630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IP30" /translation="MSRFHVGGKVVDKVDLLRRKHKAWRLDVWPFAILYVLWLTIVVP SIDFVDAAIVFGGLVVTHILVLLFTAWSVDFKCLVQYSKVNDIRLADACKITPAKFSG SKEVVPLHFRKQVASSSSATEAEEIYFDFRKQCFIYSKEEETFSKLPYPTKETFGYYL KSSGHGSDAKVLVAAEKWGRNVFEYPQPTFQKLMKEHCMEPFFVFQVFCVGLWCLDEY WYYSLFTLFMLFMFESTMAKSRLKTLSELRRVRVDSQTLMVHRCGKWLKLSGTDLLPG DVVSMGRSSGQNGEDKSVPADMLILAGSAIVNEAILTGESTPQWKVSISGRGLEEKLS AKRDKNHILFGGTKILQHTADKSFPLKTPDGGCLAVVLRTGFETSQGKLMRTILFSTD RVTANSWESGLFILFLVVFAIIAAGYVLKKGLEDPTRSKYKLFLGCSLIITSVIPPEL PMELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDICCFDKTGTLTSDDMEFCGVVGL SGSSDLESDMTKVYPRTVEILASCHALVFVDNKLVGDPLEKAALKGIDWSYKSDEKAV PKKGSGNAVQIVQRHHFASHLKRMSVVVRVQEEFFVFVKGAPETIQDRLTDLPPSYVE TYKKYTRQGSRVLALAYKSLPDMTVSEARSLERDTVECGLTFAGFAVFNCPIRADSST ILSELKNSSHDLVMITGDQALTACHVAGQVHIVSKPALILGPVKNGEEYDWVSPDETE RIRYSEKEVEALSETHDLCIGGDCIEMLQQTSAVLRVIPFVKVFARVAPEQKELIMTT FKTVRRITLMCGDGTNDVGALKQAHVGVALLNAVPPTKSESSSPGTSKDESTKSLKLK KSKPSVEATGKAVSLNAEASSKGKVATRSESSNHTASNRHLNAAEMQRQKLKKLMDEM NEEGDGRSAPIVKLGDASMASPFTAKHASVAPTTDIIRQGRSTLVTTLQMFKILGLNC LATAYVLSVMYLDGVKLGDVQATISGVFTAAFFLFISHARPLPTLSAARPHPNVFCSY VFLSLMGQFAMHLFFLISSVKEAEKYMPEECIEPDSEFHPNLVNTVSYMVSMMIQVAT FAVNYMGHPFNQSIPENKPFLYALVAAVGFFVVITSDLFRDLNDWLKLVPLPLGLRDK LLLWALLMFLGCYLWERLLRWAFPGKIPAWRKRQRVAAANSEKKQV" mobile_element 31004894..31004987 /note="source:INTACT146F_F14_scaffold_2-int 13444 13511" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 31010725..31010762 /note="source:CACAO_M_S_E4863_F51_scaffold_1 5695 5732" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(31015627..31020075) /locus_tag="TCM_025160" /note="dbxref CacaoGD:Thecc1EG025160" mRNA complement(join(31015627..31016305,31016609..31016708, 31017877..31018724,31019988..31020075)) /locus_tag="TCM_025160" /product="Thioredoxin F-type 1" /inference="alignment:exonerate- protein:2:ricco:29929.m004565" /inference="similar to AA sequence:ricco:29929.m004565" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Newbler:10:TSA:cgbaB_g11404t00001" CDS complement(join(31016171..31016305,31016609..31016708, 31017877..31018211)) /locus_tag="TCM_025160" /note="dbxref ricco:29929.m004565" /codon_start=1 /product="Thioredoxin F-type 1" /protein_id="EOY09777.1" /db_xref="TAIR:AT5G16400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A8VYL5" /translation="MSLLQFTLSPPSTIRSSPSLSCTAAHPLAASCRASSAWKSCFLL ESSSSKTVKAMSNVNNNGRNGAVVKVRSSLDTAGAKVGQVKEVTKDTFWPIVNAAGDK TVVLDMYTQWCGPCKVIAPKFQELSEKYLDVVFLKLDCNQDNKPLAKELGIRVVPTFK ILKHKKIVKEVKGAKFDDLVLAIETVRSS" mobile_element 31020716..31020813 /note="source:scaffold_5_CACTA_0612 13237 13338" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31021759..31022235) /note="source:CACAO_on_E732_scaffold_9 3464 3926" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(31022372..31025684) /note="source:CACAO_on_E732_scaffold_9 131 3468" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 31026470..31027007 /note="source:CACAO_on_E175_scaffold_1 447 968" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(31028819..31029454) /note="source:CACAO_Again_on_E124_scaffold_5 1 1108" /mobile_element_type="transposon:TIR/hAT" mobile_element 31029245..31029817 /note="source:scaffold_2_CACTA_0281 6167 6749" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31029455..31030118) /note="source:scaffold_2_CACTA_0256 16630 17289" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31031129..31031477 /note="source:CACAO_Again_on_S_E228_scaffold_7 4 346" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(31031458..31031479) /note="source:CACAO_MITE_S245_scaffold_10 1 143" /mobile_element_type="transposon:TIR/MITE" mobile_element 31031480..31031606 /note="source:CACAO_on_E169_scaffold_5 466 596" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(31031606..31031968) /note="source:MITE_PIF_Tourist_10 1 371" /mobile_element_type="transposon:TIR/MITE" mobile_element 31031855..31032082 /note="source:CACAO_on_E33_A_scaffold_3 7482 7689" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(31032033..31032511) /note="source:scaffold_3_CACTA_0398 3298 3766" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31032171..31032524 /note="source:CACAO_on_SS_E42_scaffold_2 24176 24538" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(31032824..31033344) /note="source:CACAO_Again_on_S_E60_scaffold_2 236 802" /mobile_element_type="transposon:TIR/hAT" mobile_element 31032881..31033439 /note="source:scaffold_2_CACTA_0281 6168 6749" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31033088..31033527) /note="source:scaffold_2_CACTA_0256 16849 17289" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31034313..31034738) /note="source:CACAO_hAT_E410_scaffold_1 4759 5165" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(31034729..31034842) /note="source:scaffold_3_CACTA_0398 3352 3758" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31034843..31035182 /note="source:CACAO_on_SS_E42_scaffold_2 24143 24494" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(31035077..31035204) /note="source:CACAO_Again_on_E226_scaffold_10 5 143" /mobile_element_type="transposon:TIR/hAT" gene 31037926..31049311 /locus_tag="TCM_025163" /note="dbxref CacaoGD:Thecc1EG025163" mRNA join(31037926..31038430,31039135..31039264, 31039420..31039667,31040735..31040959,31042613..31042775, 31042854..31042927,31043907..31043997,31045706..31045781, 31046514..31046585,31048280..31049311) /locus_tag="TCM_025163" /product="Eukaryotic aspartyl protease family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29929.m004566" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020060t1" /inference="similar to AA sequence:ricco:29929.m004566" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14326t1" mRNA join(31038133..31038430,31039135..31039264, 31039420..31039667,31040735..31040959,31043907..31043997, 31045706..31045781,31046514..31046585,31048280..31048784) /locus_tag="TCM_025163" /product="Eukaryotic aspartyl protease family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:29929.m004566" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020060t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019071001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc330t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14326t1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc319t10" CDS join(31038192..31038430,31039135..31039264, 31039420..31039667,31040735..31040959,31042613..31042775, 31042854..31042927,31043907..31043997,31045706..31045781, 31046514..31046585,31048280..31048431) /locus_tag="TCM_025163" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29929.m004566; paralog of Thecc1EG020060t1" /codon_start=1 /product="Eukaryotic aspartyl protease family protein, putative isoform 1" /protein_id="EOY09778.1" /db_xref="TAIR:AT3G02740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I4B6" /translation="MMDLRRLALVVVTMALTVVGEFGRCSFGNVVTFDVKHKFAGKGK NLSAVKAHDIRRRGRLLSTVDVDLPLGGNGDPSETGLYFAKIGLGNPSKDYYVQVDTG SDILWVNCGGCDKCPTKSDLGIQLTLYDPRSSSTSSLVYCDQDFCTSTYDGPLPGCKP YLQCQYNVVYGDGSSTAGYFVKDTIHLQQVTGNLQTGSTNGTVIFGCGAKQSGELGSS SEALDGILGFGQANSSMISQLAAAGKVKRMFAHCLDNIDGGGIFAIGEVVSPKVNTTP MVPNQAHYNVVMKGVEVGGSLLELPSDIFDSGDRKGTIVDSGTTLAYLPSTIYEPLMN KIFSKQPTLKLHTVEDQFTCFTFAENVDDAFPVVKFHFEDSLILTVYPHEYLFQIRED AWCFGWQNSGMQSKDGKDMILLGDLVLSNKLVVYDIENQTIGWTEYNCSSSIRVKDEN SGTVYSVGAHDIASASSLTIEGILTFLSILIALLHSSIA" CDS join(31038192..31038430,31039135..31039264, 31039420..31039667,31040735..31040959,31043907..31043997, 31045706..31045781,31046514..31046585,31048280..31048431) /locus_tag="TCM_025163" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG020060t1" /codon_start=1 /product="Eukaryotic aspartyl protease family protein, putative isoform 2" /protein_id="EOY09779.1" /db_xref="Phytozome:GSVIVT01019071001" /db_xref="TAIR:AT3G02740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M8R6" /translation="MMDLRRLALVVVTMALTVVGEFGRCSFGNVVTFDVKHKFAGKGK NLSAVKAHDIRRRGRLLSTVDVDLPLGGNGDPSETGLYFAKIGLGNPSKDYYVQVDTG SDILWVNCGGCDKCPTKSDLGIQLTLYDPRSSSTSSLVYCDQDFCTSTYDGPLPGCKP YLQCQYNVVYGDGSSTAGYFVKDTIHLQQVTGNLQTGSTNGTVIFGCGAKQSGELGSS SEALDGILGFGQANSSMISQLAAAGKVKRMFAHCLDNIDGGGIFAIGEVVSPKVNTTP MVPNHVDDAFPVVKFHFEDSLILTVYPHEYLFQIREDAWCFGWQNSGMQSKDGKDMIL LGDLVLSNKLVVYDIENQTIGWTEYNCSSSIRVKDENSGTVYSVGAHDIASASSLTIE GILTFLSILIALLHSSIA" mobile_element complement(31039003..31039054) /note="source:CACAO_M_E49556_F134_scaffold_7 2047 2091" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(31048892..31049980) /locus_tag="TCM_025164" /note="dbxref CacaoGD:Thecc1EG025164" mRNA complement(join(31048892..31049394,31049650..31049980)) /locus_tag="TCM_025164" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.40 coverage" CDS complement(join(31049270..31049394,31049650..31049797)) /locus_tag="TCM_025164" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09780.1" /translation="MKGKQRFFFISSRQKSNGQLQLPGSPSQAHPLMESLVRMSVGTE ECKLRVKCGFKFTLARYFTFAILASLCFPTFAKPNRANLIIPLALI" gene 31049540..31051419 /locus_tag="TCM_025165" /note="dbxref CacaoGD:Thecc1EG025165" mRNA 31049540..31051419 /locus_tag="TCM_025165" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025212t1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.18 coverage" CDS 31050108..31051304 /locus_tag="TCM_025165" /note="paralog of Thecc1EG025212t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09781.1" /translation="MYSLGVVFDPSDRDIVSHYLPMLISGESMSSLGDLQYVIGFADI YSTKPSVFFDVNNGNGLPFLKSNQRFIFTHRQRISKKNANGKRPRRILESHHYDEKLG VGDSGGYWRSSTAEKPILDEQRKEIGFVRTLNFFEFEDAKKSRKDATKTRWLMHEYRL PGDTFQEWVICKIKDTARSPHDEYSDSIWEKELFGKLLLPHSDDNHYHQDEYQSQIQS STVFNDGNLPSYEVDQLLDDDPFKEVDQLLEINDDNQIQTQSFTVFNKGNLPRYEVDQ LLYAHEKEISKDDDPFKEVDQLLEINDDNQIQTQSSTVFNNGNLPRYEVDQLLYAHEK EVSKDNDPFKEVDQLLEINDDNQIADYPFKEMEQLLGMNDNDPIADVDEALATMNSYY LPDLLD" gene complement(31051831..31057077) /locus_tag="TCM_025166" /note="dbxref CacaoGD:Thecc1EG025166" mRNA complement(join(31051831..31052210,31053065..31053164, 31053425..31053539,31054074..31054101,31054613..31054727, 31054809..31054897,31055803..31055900,31056008..31056141, 31056486..31056569,31056663..31057077)) /locus_tag="TCM_025166" /product="Zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma12g07520.1" /inference="similar to AA sequence:TAIR:AT4G02220.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc744t8; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc744t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7440t1" CDS complement(join(31052125..31052210,31053065..31053164, 31053425..31053539,31054074..31054101,31054613..31054727, 31054809..31054897,31055803..31055900,31056008..31056141, 31056486..31056569,31056663..31056887)) /locus_tag="TCM_025166" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein, putative isoform 2" /protein_id="EOY09783.1" /db_xref="TAIR:AT4G02220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93VB4" /translation="MDIDGKEDSIEELKGLRITPLDDDDDDDDEEIAVDDDEDDDEEE EEAVILGFVEKPQHSWSVLRQQFPSKAGGVPAWLDAYNLPSGMSCVCDICGQPLQFVL QVYAPLVEKDSTFHRTLFVFMCLSMKCLQRDQHEQWKRHPEKQSRSVKVFRCQLPRAN TFYSNEPPKGNATDKPLTPGAPLCNWCGTWKGDKFCSSCKIARYCSQKHQAMHWHSGH KLECQQLRLSPQSSDCNACDGGITEIRAQKVANSPEQVLRYCRSASSKPLWPMSGGRP SKADIARCSYCGGLLCFEFQILPQLLYYFGVKDEDHSLDWATIVVYTCEASCEGIDYS CLYGLGLESQVASSSREPILPQS" mRNA complement(join(31052478..31053164,31053425..31053539, 31054074..31054144,31054227..31054384,31054613..31054727, 31054809..31054897,31054999..31055045,31055155..31055192, 31055487..31055524,31055803..31055900,31056008..31056141, 31056486..31056569,31056663..31057030)) /locus_tag="TCM_025166" /product="Zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma12g07520.1" /inference="similar to AA sequence:Phytozome:POPTR_0002s20230.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7440t1" mRNA complement(join(31052628..31053128,31053425..31053539, 31054074..31054101,31054613..31054727,31054809..31054897, 31055803..31055900,31056008..31056141,31056486..31056569, 31056663..31057077)) /locus_tag="TCM_025166" /product="Zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma12g07520.1" /inference="similar to AA sequence:TAIR:AT4G02220.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc744t4_C1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc744t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7440t1" CDS complement(join(31053003..31053128,31053425..31053539, 31054074..31054101,31054613..31054727,31054809..31054897, 31055803..31055900,31056008..31056141,31056486..31056569, 31056663..31056887)) /locus_tag="TCM_025166" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein, putative isoform 3" /protein_id="EOY09784.1" /db_xref="TAIR:AT4G02220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93VB4" /translation="MDIDGKEDSIEELKGLRITPLDDDDDDDDEEIAVDDDEDDDEEE EEAVILGFVEKPQHSWSVLRQQFPSKAGGVPAWLDAYNLPSGMSCVCDICGQPLQFVL QVYAPLVEKDSTFHRTLFVFMCLSMKCLQRDQHEQWKRHPEKQSRSVKVFRCQLPRAN TFYSNEPPKGNATDKPLTPGAPLCNWCGTWKGDKFCSSCKIARYCSQKHQAMHWHSGH KLECQQLRLSPQSSDCNACDGGITEIRAQKVANSPEQVLRYCRSASSKPLWPMSGGRP SKADIARCSYCGGLLCFEFQDEDHSLDWATIVVYTCEASCEGIGYKEEFAWVQLSPST NFP" CDS complement(join(31053003..31053164,31053425..31053539, 31054074..31054144,31054227..31054384,31054613..31054727, 31054809..31054897,31054999..31055045,31055155..31055192, 31055487..31055524,31055803..31055900,31056008..31056141, 31056486..31056569,31056663..31056887)) /locus_tag="TCM_025166" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein, putative isoform 1" /protein_id="EOY09782.1" /db_xref="Phytozome:POPTR_0002s20230.1" /db_xref="TAIR:AT4G02220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93VB4" /translation="MDIDGKEDSIEELKGLRITPLDDDDDDDDEEIAVDDDEDDDEEE EEAVILGFVEKPQHSWSVLRQQFPSKAGGVPAWLDAYNLPSGMSCVCDICGQPLQFVL QVYAPLVEKDSTFHRTLFVFMCLSMKCLQRDQHEQWKRHPEKQSRSVKVFRCQLPRAN TFYSNEPPKGNATDKPLTPGGRAMVELIKMERLYATAMSSLAAGFILSLIGIAFLQSL CSQAPLCNWCGTWKGDKFCSSCKIARYCSQKHQAMHWHSGHKLECQQLRLSPQSSDCN ACDGGITEIRAQKVASKTLWPEYEIKNEHESDYDTEMSGDDGHTNNSLVSRNRIDDSM KSLMDNFEGDADKKSWASFQERIANSPEQVLRYCRSASSKPLWPMSGGRPSKADIARC SYCGGLLCFEFQILPQLLYYFGVKDEDHSLDWATIVVYTCEASCEGIGYKEEFAWVQL SPSTNFP" mRNA complement(join(31053776..31054144,31054227..31054318, 31054613..31054727,31054809..31054897,31055803..31055900, 31056008..31056141,31056486..31056569,31056663..31057077)) /locus_tag="TCM_025166" /product="Zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma12g07520.1" /inference="similar to AA sequence:Phytozome:POPTR_0002s20230.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc733t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7440t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc744t8" CDS complement(join(31054070..31054144,31054227..31054318, 31054613..31054727,31054809..31054897,31055803..31055900, 31056008..31056141,31056486..31056569,31056663..31056887)) /locus_tag="TCM_025166" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein, putative isoform 4" /protein_id="EOY09785.1" /db_xref="Phytozome:POPTR_0002s20230.1" /db_xref="TAIR:AT4G02220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93VB4" /translation="MDIDGKEDSIEELKGLRITPLDDDDDDDDEEIAVDDDEDDDEEE EEAVILGFVEKPQHSWSVLRQQFPSKAGGVPAWLDAYNLPSGMSCVCDICGQPLQFVL QVYAPLVEKDSTFHRTLFVFMCLSMKCLQRDQHEQWKRHPEKQSRSVKVFRCQLPRAN TFYSNEPPKGNATDKPLTPGAPLCNWCGTWKGDKFCSSCKIARYCSQKHQAMHWHSGH KLECQQLRLSPQSSDCNACDGGITEIRAQKEMSGDDGHTNNSLVSRNRIDDSMKSLMD NFEGDADKKSWASFQERIANSPEQVLR" gene 31058400..31064309 /locus_tag="TCM_025167" /note="dbxref CacaoGD:Thecc1EG025167" mRNA join(31058400..31058771,31061996..31062222, 31062880..31062960,31063333..31063683,31063995..31064309) /locus_tag="TCM_025167" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s08320.1" /inference="similar to AA sequence:ricco:29929.m004567" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01056t00001" mRNA join(31058500..31058771,31061996..31062222, 31063333..31063683,31063995..31064243) /locus_tag="TCM_025167" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s08320.1" /inference="similar to AA sequence:ricco:29929.m004567" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01056t00002; inference alignment:Newbler:10:TSA:cgbaB_g01056t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc190t34_C1" CDS join(31058597..31058771,31061996..31062222, 31062880..31062960,31063333..31063683,31063995..31064096) /locus_tag="TCM_025167" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29929.m004567" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY09786.1" /db_xref="TAIR:AT1G65230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5N7X2" /translation="MSGASVSSALAATVSASAWIHRSISNGKCLFSSKQLKGRAHPSQ SHSHHHQHHPFLLRVTNKSSRTEVSADPRIERTEGDKIVDGMDFGELCDEFECISSPL VESTARQLVRDILELREGNRALGTYAVSVKYKDPVRSFTGRKKYKRPLWITGAVENPS VKVQEMVMLSTSVLSIKWTIQGKPKSFLASIGGDLIIRVNSQFTLNQISGQVIEHEEF WDLSSSSVIAQGFFWTSRRLFATIEAGKDLADGAKDLSTRFSSKQENLEVYPDPSGDP TKFFQRDDGFQRDVYQIALFLAVLYFVIQFLRTTL" CDS join(31058597..31058771,31061996..31062222, 31063333..31063683,31063995..31064096) /locus_tag="TCM_025167" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29929.m004567" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY09787.1" /db_xref="TAIR:AT1G65230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5N7X2" /translation="MSGASVSSALAATVSASAWIHRSISNGKCLFSSKQLKGRAHPSQ SHSHHHQHHPFLLRVTNKSSRTEVSADPRIERTEGDKIVDGMDFGELCDEFECISSPL VESTARQLVRDILELREGNRALGTYAVSVKYKKVQEMVMLSTSVLSIKWTIQGKPKSF LASIGGDLIIRVNSQFTLNQISGQVIEHEEFWDLSSSSVIAQGFFWTSRRLFATIEAG KDLADGAKDLSTRFSSKQENLEVYPDPSGDPTKFFQRDDGFQRDVYQIALFLAVLYFV IQFLRTTL" mobile_element 31059076..31059321 /note="source:CACAO_M_E52630_F119_scaffold_7 2 251" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 31059494..31060364 /note="source:CACAO_M_E52630_F119_scaffold_7 65 925" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(31065337..31069211) /locus_tag="TCM_025169" /note="dbxref CacaoGD:Thecc1EG025169" mRNA complement(join(31065337..31065511,31065589..31066025, 31066128..31066768,31066927..31066964,31067418..31067516, 31069018..31069211)) /locus_tag="TCM_025169" /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s04770.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025147t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s04650.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.44 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7472t2" CDS complement(join(31065667..31066025,31066128..31066662)) /locus_tag="TCM_025169" /note="paralog of Thecc1EG025147t1" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative" /protein_id="EOY09788.1" /db_xref="Phytozome:POPTR_0005s04650.1" /db_xref="TAIR:AT1G62930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I898" /translation="MCTSCQWKEVTRLLNEMVANNCKPNVITYNILVDALCKEGRAFE AQDIVEGMIQKGVEPDIVTYNSLMDGYCLQGEMDEARKLLNFLVSSGCAPNAVTYNIV INGYCKARRINGAVEVFREMTQNGSILDSVTYKTLISGMSLIGTLLAAQVLFKESAHG VVPNMLTYSALLDGLCKHVGQLKVARKLFCALTVKGLHPNVYTYNIMIKWLCKEGLPN EAHELLRKMEVDGCMPNSCSYNTMIKGFLENNDVSRAAEILHEMVHKGFSADVSTAAM VVDLLISDSTGESFCALVQKS" mobile_element 31068177..31068224 /note="source:CACAO_M_E52694_F25_scaffold_8 2858 2903" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 31069158..31069205 /note="source:CACAO_M_S_E90022_F9_scaffold_8 3098 3145" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(31069171..31069220) /note="source:CACAO_M_S_E109853_F60_scaffold_9 6213 6260" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(31069388..31070101) /locus_tag="TCM_025171" /note="dbxref CacaoGD:Thecc1EG025171" mRNA complement(join(31069388..31069523,31069600..31070101)) /locus_tag="TCM_025171" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025169t1" /note="quality class is medium-utrpoor, express is none, homology is paralog strong, intron is medium, protein is utrpoor_complete" CDS complement(31069675..31069872) /locus_tag="TCM_025171" /note="paralog of Thecc1EG025169t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09789.1" /translation="MPGCCSYATMIKGFLENNGVSRAAEILHEMVHKGFSTDVSTAAT VVDLLISDLTGESFCALVQKR" mobile_element complement(31070000..31070421) /note="source:CACAO_M_E84368_F4_scaffold_10 5719 6139" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(31070420..31071056) /note="source:INTACT117_F146_scaffold_2-int 1645 2213" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(31071051..31072185) /note="source:INTACT135F_F90_scaffold_2-int 12863 14003" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 31072184..31073920 /note="source:INTACT59_F126_scaffold_9-int 787 2532" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(31073919..31075130) /note="source:CACAO_M_E84368_F4_scaffold_10 11579 12792" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(31075724..31076322) /locus_tag="TCM_025172" /note="dbxref CacaoGD:Thecc1EG025172" mRNA complement(31075724..31076322) /locus_tag="TCM_025172" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025147t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s28610.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.54 coverage" CDS complement(31076048..31076320) /locus_tag="TCM_025172" /note="paralog of Thecc1EG025147t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09790.1" /db_xref="Phytozome:POPTR_0006s28610.1" /translation="MLNCFCRLHRVDSGFSVFGKMLKLGLHPSIVTFSTLINGLCIVG EVAQAVRLFDDMVREGYKPNLIAYNTIVNGLCKISSTNGAIGFAKG" gene <31076751..31084508 /locus_tag="TCM_025173" /note="dbxref CacaoGD:Thecc1EG025173" mRNA join(<31076751..31076780,31079434..31079523, 31079704..31079840,31081306..31081382,31081604..31081726, 31081949..31082051,31082145..31082182,31082275..31082376, 31082742..31082819,31082899..31083144,31083313..31083378, 31083468..31083589,31083737..31083850,31083920..31084214) /locus_tag="TCM_025173" /product="Serine carboxypeptidase-like 20 isoform 3" /inference="alignment:exonerate-protein:2:frave:gene16815" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002663t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019074001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc191t29_C2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc191t29_C2; inference alignment:Newbler:10:TSA:cgbaL_g01451t00001" CDS join(<31076752..31076780,31079434..31079523, 31079704..31079840,31081306..31081382,31081604..31081726, 31081949..31082051,31082145..31082182,31082275..31082376, 31082742..31082819,31082899..31083144,31083313..31083378, 31083468..31083589,31083737..31083850,31083920..31083971) /locus_tag="TCM_025173" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG002663t1" /codon_start=1 /product="Serine carboxypeptidase-like 20 isoform 3" /protein_id="EOY09793.1" /db_xref="Phytozome:GSVIVT01019074001" /db_xref="TAIR:AT4G12910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AIJ0" /translation="QLHSTPINFSCAIVEAVQNGSLVTQLPGFNGVFPSKHYSGYVKV DEKNLFYYFVVSERNPSKDPVVLWLNGGPGCSSFDGFVYEHGPFNFQEGKPKRSLPTL HLNPYSWSKVSNIIYLDSPVGVGFSYSKNTSTYITGDRQTAADTHAFLLKWFALYPEF VSNPFYISGESYAGIYVPTLASEVVKGIKAGAKPRINFEGYMVGNGVTGSIFDENALV PFAHGMALISDDIFEEVEAACGGNYSNPTKSCDENLEKVYTAIAGLNIYDILEPCYHD PIGQQDSKGNTSLPVSFQKLGATERPLAVRTRMFGRAWPFRAPVKDGIVPLWPELAAN KLHVSCINDEVATTWLNDAEVRKAIHAEPENVAGPWELCTDRISYDHDAGSMIPYHKT LTAEGYRALIFSGDHDMCVPYTGSQAWTKSLGYKTTIQWRSWFSNQQVAGYLQGYEHN ITFLTVKV" mRNA join(31079075..31079523,31079704..31079840, 31081306..31081382,31081604..31081726,31081949..31082051, 31082145..31082182,31082275..31082376,31082742..31082819, 31082899..31083144,31083313..31083378,31083468..31083589, 31083737..31083850,31083920..31083965,31084191..31084508) /locus_tag="TCM_025173" /product="Serine carboxypeptidase-like 20 isoform 1" /inference="alignment:exonerate-protein:2:frave:gene16815" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002663t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019074001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01451t00001" mRNA join(31079111..31079523,31079704..31079840, 31081306..31081382,31081604..31081726,31081949..31082051, 31082145..31082182,31082275..31082376,31082742..31082819, 31082899..31083144,31083313..31083378,31083468..31083589, 31083737..31083850,31083920..31083965,31084225..>31084241) /locus_tag="TCM_025173" /product="Serine carboxypeptidase-like 20 isoform 2" /inference="alignment:exonerate-protein:2:frave:gene16815" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002663t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019074001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc190t41; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc191t29_C2; inference alignment:Newbler:10:TSA:cgbaL_g01451t00001" mRNA join(31079111..31079523,31079704..31079840, 31081306..31081382,31081604..31081726,31081949..31082051, 31082145..31082182,31082275..31082376,31082742..31082819, 31082899..31083338) /locus_tag="TCM_025173" /product="Serine carboxypeptidase-like 20 isoform 4" /inference="alignment:exonerate-protein:2:frave:gene16815" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002663t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019074001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc190t33; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc191t29_C2; inference alignment:Newbler:10:TSA:cgbaL_g01451t00001" CDS join(31079390..31079523,31079704..31079840, 31081306..31081382,31081604..31081726,31081949..31082051, 31082145..31082182,31082275..31082376,31082742..31082819, 31082899..31083144,31083313..31083378,31083468..31083589, 31083737..31083850,31083920..31083965,31084191..31084301) /locus_tag="TCM_025173" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG002663t1" /codon_start=1 /product="Serine carboxypeptidase-like 20 isoform 1" /protein_id="EOY09791.1" /db_xref="Phytozome:GSVIVT01019074001" /db_xref="TAIR:AT4G12910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AIJ0" /translation="MDKMLFVISFCMLFSCAIVEAVQNGSLVTQLPGFNGVFPSKHYS GYVKVDEKNLFYYFVVSERNPSKDPVVLWLNGGPGCSSFDGFVYEHGPFNFQEGKPKR SLPTLHLNPYSWSKVSNIIYLDSPVGVGFSYSKNTSTYITGDRQTAADTHAFLLKWFA LYPEFVSNPFYISGESYAGIYVPTLASEVVKGIKAGAKPRINFEGYMVGNGVTGSIFD ENALVPFAHGMALISDDIFEEVEAACGGNYSNPTKSCDENLEKVYTAIAGLNIYDILE PCYHDPIGQQDSKGNTSLPVSFQKLGATERPLAVRTRMFGRAWPFRAPVKDGIVPLWP ELAANKLHVSCINDEVATTWLNDAEVRKAIHAEPENVAGPWELCTDRISYDHDAGSMI PYHKTLTAEGYRALIFSGDHDMCVPYTGSQAWTKSLGYKTTIQWRSWFSNQQVAGYLQ GYEHNITFLTVKLLQNNSLLQGAGHTVPEYKPGEALDFYSRWLDRKPI" CDS join(31079390..31079523,31079704..31079840, 31081306..31081382,31081604..31081726,31081949..31082051, 31082145..31082182,31082275..31082376,31082742..31082819, 31082899..31083144,31083313..31083378,31083468..31083589, 31083737..31083850,31083920..31083965,31084225..>31084239) /locus_tag="TCM_025173" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG002663t1" /codon_start=1 /product="Serine carboxypeptidase-like 20 isoform 2" /protein_id="EOY09792.1" /db_xref="Phytozome:GSVIVT01019074001" /db_xref="TAIR:AT4G12910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AIJ0" /translation="MDKMLFVISFCMLFSCAIVEAVQNGSLVTQLPGFNGVFPSKHYS GYVKVDEKNLFYYFVVSERNPSKDPVVLWLNGGPGCSSFDGFVYEHGPFNFQEGKPKR SLPTLHLNPYSWSKVSNIIYLDSPVGVGFSYSKNTSTYITGDRQTAADTHAFLLKWFA LYPEFVSNPFYISGESYAGIYVPTLASEVVKGIKAGAKPRINFEGYMVGNGVTGSIFD ENALVPFAHGMALISDDIFEEVEAACGGNYSNPTKSCDENLEKVYTAIAGLNIYDILE PCYHDPIGQQDSKGNTSLPVSFQKLGATERPLAVRTRMFGRAWPFRAPVKDGIVPLWP ELAANKLHVSCINDEVATTWLNDAEVRKAIHAEPENVAGPWELCTDRISYDHDAGSMI PYHKTLTAEGYRALIFSGDHDMCVPYTGSQAWTKSLGYKTTIQWRSWFSNQQVAGYLQ GYEHNITFLTVKDIQSL" CDS join(31079390..31079523,31079704..31079840, 31081306..31081382,31081604..31081726,31081949..31082051, 31082145..31082182,31082275..31082376,31082742..31082819, 31082899..31083240) /locus_tag="TCM_025173" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG002663t1" /codon_start=1 /product="Serine carboxypeptidase-like 20 isoform 4" /protein_id="EOY09794.1" /db_xref="Phytozome:GSVIVT01019074001" /db_xref="TAIR:AT4G12910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AIJ0" /translation="MDKMLFVISFCMLFSCAIVEAVQNGSLVTQLPGFNGVFPSKHYS GYVKVDEKNLFYYFVVSERNPSKDPVVLWLNGGPGCSSFDGFVYEHGPFNFQEGKPKR SLPTLHLNPYSWSKVSNIIYLDSPVGVGFSYSKNTSTYITGDRQTAADTHAFLLKWFA LYPEFVSNPFYISGESYAGIYVPTLASEVVKGIKAGAKPRINFEGYMVGNGVTGSIFD ENALVPFAHGMALISDDIFEEVEAACGGNYSNPTKSCDENLEKVYTAIAGLNIYDILE PCYHDPIGQQDSKGNTSLPVSFQKLGATERPLAVRTRMFGRAWPFRAPVKDGIVPLWP ELAANKLHVSCIVSYFNHLFETVKLFFSKYNDANVICLNKVTP" gene complement(31086995..31093495) /locus_tag="TCM_025174" /note="dbxref CacaoGD:Thecc1EG025174" mRNA complement(join(31086995..31087367,31087476..31087610, 31088201..31088699,31088791..31089014,31090401..31090518, 31090617..31091006,31092091..31092796,31093138..31093495)) /locus_tag="TCM_025174" /product="Phosphatase 2C family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29929.m004572" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027555t4" /inference="similar to AA sequence:ricco:29929.m004572" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:PASA:2:TSA:puevd3b024353t1a3; alternateUTRof:Thecc1EG025174t1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc490t11" mRNA complement(join(31086995..31087367,31087476..31087610, 31088196..31088699,31088791..31089014,31090401..31090518, 31090617..31091006,31092091..31092796,31093138..31093495)) /locus_tag="TCM_025174" /product="Phosphatase 2C family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29929.m004572" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027555t4" /inference="similar to AA sequence:ricco:29929.m004572" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc490t11; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc490t11" mRNA complement(join(31086995..31087370,31087476..31088699, 31088791..31089014,31090401..31090518,31090617..31091006, 31092091..31092796,31093138..31093495)) /locus_tag="TCM_025174" /product="Phosphatase 2C family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29929.m004572" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027555t4" /inference="similar to AA sequence:ricco:29929.m004572" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:PASA:2:TSA:puevd3b024353t1a2; alternateUTRof:Thecc1EG025174t1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc490t11" CDS complement(join(31088205..31088699,31088791..31089014, 31090401..31090518,31090617..31091006,31092091..31092345)) /locus_tag="TCM_025174" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29929.m004572; paralog of Thecc1EG027555t4" /codon_start=1 /product="Phosphatase 2C family protein isoform 1" /protein_id="EOY09795.1" /db_xref="TAIR:AT3G02750.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M8R7" /translation="MGSCLSAESRSPLPGSPSSPHLPNMRRRGSRKRLGSRNSSFDYR KEEPLHRIPGRLFLNGSSDVASLFTQQGKKGTNQDAMIVWENFGSRTDTVFCGVFDGH GPYGHMVAKRVRDHLPLKLCAHWEVSISSEDVLREISLNTAGSMNSEDTTFVSADEES RASVDLEETEKHPEIFQALKESFLKAFKVMDRELRMHANIDCFCSGTTAVTLVKQGPY LVIGNVGDSRAVLGTRDKDNSLTAVQLTVDLKPNLPAEAERIRKCKGRVFALQDEPEV ARVWLPNNDSPGLAMARAFGDFCLKDFGLISVPEISYWRLSEKDEFIVLATDGIWDVL SNKEVVDIVASAPARSSAARALVESAVRAWRYKYPTSKVDDCAVVCLFLDSNSNNLST AFNAKPKVQPTSMDQIDNDNEKDNNLAVLTSLDRSGTVRTGEEVLPGVNEDSSKQEEM NSELGIDWSALEGVSRVNTLLNLPRFVPGEEDKKAAGGTKARK" CDS complement(join(31088205..31088699,31088791..31089014, 31090401..31090518,31090617..31091006,31092091..31092345)) /locus_tag="TCM_025174" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29929.m004572; paralog of Thecc1EG027555t4" /codon_start=1 /product="Phosphatase 2C family protein isoform 1" /protein_id="EOY09796.1" /db_xref="TAIR:AT3G02750.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M8R7" /translation="MGSCLSAESRSPLPGSPSSPHLPNMRRRGSRKRLGSRNSSFDYR KEEPLHRIPGRLFLNGSSDVASLFTQQGKKGTNQDAMIVWENFGSRTDTVFCGVFDGH GPYGHMVAKRVRDHLPLKLCAHWEVSISSEDVLREISLNTAGSMNSEDTTFVSADEES RASVDLEETEKHPEIFQALKESFLKAFKVMDRELRMHANIDCFCSGTTAVTLVKQGPY LVIGNVGDSRAVLGTRDKDNSLTAVQLTVDLKPNLPAEAERIRKCKGRVFALQDEPEV ARVWLPNNDSPGLAMARAFGDFCLKDFGLISVPEISYWRLSEKDEFIVLATDGIWDVL SNKEVVDIVASAPARSSAARALVESAVRAWRYKYPTSKVDDCAVVCLFLDSNSNNLST AFNAKPKVQPTSMDQIDNDNEKDNNLAVLTSLDRSGTVRTGEEVLPGVNEDSSKQEEM NSELGIDWSALEGVSRVNTLLNLPRFVPGEEDKKAAGGTKARK" CDS complement(join(31088205..31088699,31088791..31089014, 31090401..31090518,31090617..31091006,31092091..31092345)) /locus_tag="TCM_025174" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29929.m004572; paralog of Thecc1EG027555t4" /codon_start=1 /product="Phosphatase 2C family protein isoform 1" /protein_id="EOY09797.1" /db_xref="TAIR:AT3G02750.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M8R7" /translation="MGSCLSAESRSPLPGSPSSPHLPNMRRRGSRKRLGSRNSSFDYR KEEPLHRIPGRLFLNGSSDVASLFTQQGKKGTNQDAMIVWENFGSRTDTVFCGVFDGH GPYGHMVAKRVRDHLPLKLCAHWEVSISSEDVLREISLNTAGSMNSEDTTFVSADEES RASVDLEETEKHPEIFQALKESFLKAFKVMDRELRMHANIDCFCSGTTAVTLVKQGPY LVIGNVGDSRAVLGTRDKDNSLTAVQLTVDLKPNLPAEAERIRKCKGRVFALQDEPEV ARVWLPNNDSPGLAMARAFGDFCLKDFGLISVPEISYWRLSEKDEFIVLATDGIWDVL SNKEVVDIVASAPARSSAARALVESAVRAWRYKYPTSKVDDCAVVCLFLDSNSNNLST AFNAKPKVQPTSMDQIDNDNEKDNNLAVLTSLDRSGTVRTGEEVLPGVNEDSSKQEEM NSELGIDWSALEGVSRVNTLLNLPRFVPGEEDKKAAGGTKARK" mobile_element 31095296..31095372 /note="source:CACAO_Again_on_S_E275_scaffold_9 1 79" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(31095370..31096303) /note="source:scaffold_3_CACTA_0398 3292 4161" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31097804..31097858) /note="source:scaffold_5_CACTA_0584 1910 1965" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31103884..31103995 /note="source:scaffold_1_CACTA_0008 12761 12869" /mobile_element_type="transposon:TIR/CACTA" gene 31105327..31108643 /locus_tag="TCM_025175" /note="dbxref CacaoGD:Thecc1EG025175" mRNA join(31105327..31105658,31106878..31106922, 31107334..31107807,31108206..31108643) /locus_tag="TCM_025175" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(31105441..31105658,31106878..31106922, 31107334..31107807,31108206..31108497) /locus_tag="TCM_025175" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09798.1" /translation="MILCSESSSMTPYLRSEFLRLLLILLYGVGVAVVLIFYGRAPYR TVLLPLEEFDKVIHSPRVCCIMCGEINPWNVDHNVINSLPKVSRPQALWVRLIWAKYD YGRYTCLNKLRRLGSSSFWSAIGDVWNAFKTNVRWAIGNEKTIWFWMDLWLRDQTLTD IDRSRGFIFQNNSLVKDFVMADGERDFNILNYYLPPKELTLLSETIVPQHSSTQDMWY WAIYNFFSYELLRKQKNFNSTNVFGIWRLIYTLIAAIQEERLINVDNGRDSSAFKEEV FISWRAPEVDWISLNTNGACQASTEQSAAGGVLRDSPSHWKSGFAMRLRKCTAYQAKL GGFRKIVL" mobile_element 31108934..31109182 /note="source:INTACT1330F_F382_scaffold_8-int 12735 12974" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 31110449..31111088 /note="source:CACAO_on_E459_scaffold_2 1909 2550" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(31111412..31111455) /note="source:CACAO_M_E14113_F106_scaffold_3 13831 13874" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(31111458..31111830) /note="source:scaffold_5_CACTA_0614 1447 1777" /mobile_element_type="transposon:TIR/CACTA" gene 31114148..31116285 /locus_tag="TCM_025176" /note="dbxref CacaoGD:Thecc1EG025176" mRNA 31114148..31116285 /locus_tag="TCM_025176" /product="UDP-glucosyltransferase, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s11400.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025177t1" /inference="similar to AA sequence:Phytozome:POPTR_0017s11380.1" /note="transcript variant 1; alternatively spliced; quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.20 coverage" CDS 31114499..31116031 /locus_tag="TCM_025176" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG025177t1" /codon_start=1 /product="UDP-glucosyltransferase, putative isoform 1" /protein_id="EOY09799.1" /db_xref="Phytozome:POPTR_0017s11380.1" /db_xref="TAIR:AT5G12890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SUM4" /translation="MSERSLGSSSEHIVMLPMMAQGHLIPFLALARKIHQRTGFNITI ASTPLNIQYLRSTFYKDSTPATECSGIHLAELIPFGRIVDQSKLPIPDRNAENLPLDQ MEELFSLTISLQAPFHRLLSDIKEKEGRPPLCTISDIFMGWAVEVAKSVGTINITFTT TGAYGGLAYFSLWLNLPHLRADSEELTIPGLPDRCRFHISQFHKFVRMADGSDPCSRF LQPQISQTFQSFGYLCHTAEEVEPLALEWLRNYIKLPIWAIGPLLPPVMLNKSPYSGS SMSKHRAGKQPGISLERCIEWLDLHCPDSVLYVSFGSQNTISPSQMMELAKGLEESRN PFIWVIRPPFGFDMKGEFKAEWLPEGFEERMSESKQGLLVRKWAPQVETLLHKSTGAF LSHCGWNSVLESLSQGVPIIGWPLVGEQPFNSKMLVEEMGVSVELTRGHDSTIEAKEA KKVIEMVMNKKGKGGEMRKKAVEIAEKIRAAVTEEGERKGSSITALDDFISAVLTKRF SE" mRNA join(31114695..31116023,31116098..31116212) /locus_tag="TCM_025176" /product="UDP-glucosyltransferase, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s11400.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025177t1" /inference="similar to AA sequence:Phytozome:POPTR_0017s11380.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.29 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc359t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc359t1" CDS join(31114805..31116023,31116098..31116153) /locus_tag="TCM_025176" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG025177t1" /codon_start=1 /product="UDP-glucosyltransferase, putative isoform 2" /protein_id="EOY09800.1" /db_xref="Phytozome:POPTR_0017s11380.1" /db_xref="TAIR:AT5G12890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SUM4" /translation="MEELFSLTISLQAPFHRLLSDIKEKEGRPPLCTISDIFMGWAVE VAKSVGTINITFTTTGAYGGLAYFSLWLNLPHLRADSEELTIPGLPDRCRFHISQFHK FVRMADGSDPCSRFLQPQISQTFQSFGYLCHTAEEVEPLALEWLRNYIKLPIWAIGPL LPPVMLNKSPYSGSSMSKHRAGKQPGISLERCIEWLDLHCPDSVLYVSFGSQNTISPS QMMELAKGLEESRNPFIWVIRPPFGFDMKGEFKAEWLPEGFEERMSESKQGLLVRKWA PQVETLLHKSTGAFLSHCGWNSVLESLSQGVPIIGWPLVGEQPFNSKMLVEEMGVSVE LTRGHDSTIEAKEAKKVIEMVMNKKGKGGEMRKKAVEIAEKIRAAVTEEGERKGSSIT ALDDFISAVLTKRFTSSLAANHSQGTSLILCH" gene complement(31116765..31120135) /locus_tag="TCM_025177" /note="dbxref CacaoGD:Thecc1EG025177" mRNA complement(join(31116765..31118678,31119613..31120135)) /locus_tag="TCM_025177" /product="UDP-Glycosyltransferase superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400023155.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025176t1" /inference="similar to AA sequence:Phytozome:POPTR_0017s11380.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.19 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00469t00002_G2" CDS complement(31116951..31118480) /locus_tag="TCM_025177" /note="paralog of Thecc1EG025176t1" /codon_start=1 /product="UDP-Glycosyltransferase superfamily protein, putative" /protein_id="EOY09801.1" /db_xref="Phytozome:POPTR_0017s11380.1" /db_xref="TAIR:AT5G12890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BZ96" /translation="MGGSTEHIVMLPLMAHGHLIPLLALAREIHQRKGFTITIASTPL NIKYLRSTICKDSSSTTDRQSAIHLAELPFCCSGLPPNSDNTENLHVDQIGTLLRSTI SLETPFHRLLLDIIERDGKPPMCVISDFFMGWAVDVAKAVGTSSVTFTPLGAYGTLAY WSSWLNVPHGIIDSEEFHLPGFPDTCRFPVSILTPNLRMADGNDSWSRIIQPQILSAF QSSGYLCHTVEELEHLALEWLRKYTNLPVWPVGPLLPQTVLNNSSSSGSFISKQRTGK ESGISLERCLEWLDSHRPASVLYISFGSQNAISQSQMMNLATGLESSKTPFIWVIRPP RGFDLIGEFKAEWLPEKFEDRMRESKQGLLVKNWAPQLEILMHKSTGAFLSHCGWNSV LESLSQGVPIIGWPLEAEQIFNCKMLMEEMGVCVELTRGAQSTIEGGKVEKVIQMVMD KEGKGGEMKRKAVETGKKIRTAKRQEGEEKGSSIKALDDFVAAIIAMRKEQCVGAMRN E" gene 31119647..31123710 /locus_tag="TCM_025178" /note="dbxref CacaoGD:Thecc1EG025178" mRNA join(31119647..31120174,31120526..31120804, 31120911..31121024,31121290..31121717,31121826..31121941, 31122168..31122277,31122393..31122764,31122972..31123710) /locus_tag="TCM_025178" /product="Uncharacterized protein" /inference="similar to AA sequence:Phytozome:GSVIVT01007594001" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.22 coverage" CDS join(31120646..31120804,31120911..31121024, 31121290..31121717,31121826..31121941,31122168..31122277, 31122393..31122764,31122972..31123568) /locus_tag="TCM_025178" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09802.1" /db_xref="Phytozome:GSVIVT01007594001" /db_xref="TAIR:AT3G01680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BB78" /translation="METPSAFLSSKTSVQLLDEIRATHANDDQRDVDVKPILLSMTKI LDDVEGDIKGTARGRRVTSKGSTSLPPAFDHSMLESILADIRNVSGEFSCNCSEGENA HATTMKLLETLKTYSWNTKVVLALAAFTANLGESWLLLQRGNTNSLATSVALLRQVPE IDRLDLLGSEVGKLIQAIRNLASCNAKFMMKVHPWYFSKDTSPISEAKLEIIRAAYWT IHSVVQIASLIGRRNKSTALSMEKGKTLVAHLETEVSEISKILMYHLKRCKEYIGKEM EDAYQSLLELMQRSGRDIVEILNRFLCHGNMDKVDIEKLRSKHVLFLISDLDISLGEI TVLNELYLKGEGYEVVWLPVVDGLYDKKKFVELKSSMKWYTDVPAILDPAVIKYIKEV WHFIKNQIAVVLTPEGKVTCQSALPMLWTWGNEAVPFTAEKIVERKLICLYGGGSIDW IREFNTGLKFVLARIGESVEMVYVGKNNDKDWTEKVIRDLRVIKSERHFWARLQSMLY LYTKMRQGKTLTKDDPFMQEVMKILSYDGGDRGWALFCKGPDVKVRMDGETARAIISK HGDLETYAKRHGFLEGLNYYMEEQDIPHSCVLQLPLIDSEVPGKMCCDQCGREMEMHY TYRCRAL" gene 31124381..31128345 /locus_tag="TCM_025179" /note="dbxref CacaoGD:Thecc1EG025179" mRNA join(31124381..31124631,31124749..31124858, 31125827..31125909,31127169..31127215,31127838..31127916, 31128012..31128345) /locus_tag="TCM_025179" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400039028" /inference="similar to AA sequence:Phytozome:POPTR_0030s00510.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:PASA:2:TSA:puevd3b024358t1a2; alternateUTRof:Thecc1EG025179t3; inference alignment:Newbler:10:TSA:cgbaL_g00590t00001" mRNA join(31124381..31124631,31124749..31124858, 31125145..31125210,31125827..31125909,31127169..31127215, 31127838..31127916,31128012..31128331) /locus_tag="TCM_025179" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400039028" /inference="similar to AA sequence:Phytozome:GSVIVT01021847001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00590t00001" mRNA join(31124386..31124631,31124749..31124858, 31125827..31125909,31127169..31127215,31127838..31127916, 31128012..31128345) /locus_tag="TCM_025179" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400039028" /inference="similar to AA sequence:Phytozome:POPTR_0030s00510.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00633t00002; inference alignment:Newbler:10:TSA:cgbaL_g00590t00001" mRNA join(31124386..31124631,31124749..31124858, 31125145..31125210,31125827..31125909,31127169..31127282, 31127838..31127916,31128012..31128038) /locus_tag="TCM_025179" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400039028" /inference="similar to AA sequence:Phytozome:GSVIVT01021847001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00633t00003; inference alignment:Newbler:10:TSA:cgbaL_g00590t00001" CDS join(31124423..31124631,31124749..31124858, 31125145..31125210,31125827..31125909,31127169..31127215, 31127838..31127916,31128012..31128098) /locus_tag="TCM_025179" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY09803.1" /db_xref="Phytozome:GSVIVT01021847001" /db_xref="TAIR:AT3G04890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TUN0" /translation="MAGIGYPNLIPRVNRTTTQSPLNLQRAHGARCCSVAPENEKKTK TPQILRLAVSGVTELLRLFSSSTKDRVDDGLCTREREGISVSDVDEVLRILKSDYENA YFVTGNFTSAIYAEDCIFEDPTIRFRGKELYSRNLKLLVPFFDNPSIGLQKIEKGVKV ETNFVLATWRLRTFLKLPWKPLISIDGSTFYELGQKFTIVRHAESWNVSALEAVGQIF TPSFWKAK" CDS join(31124423..31124631,31124749..31124858, 31125827..31125909,31127169..31127215,31127838..31127916, 31128012..31128098) /locus_tag="TCM_025179" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY09805.1" /db_xref="Phytozome:POPTR_0030s00510.1" /db_xref="TAIR:AT3G04890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I8B7" /translation="MAGIGYPNLIPRVNRTTTQSPLNLQRAHGARCCSVAPENEKKTK TPQILRLAVSGVTELLRLFSSSTKDRVDDGLCTREREGISVSDVDEVLRILKSDYENA YFVTGKELYSRNLKLLVPFFDNPSIGLQKIEKGVKVETNFVLATWRLRTFLKLPWKPL ISIDGSTFYELGQKFTIVRHAESWNVSALEAVGQIFTPSFWKAK" CDS join(31124423..31124631,31124749..31124858, 31125827..31125909,31127169..31127215,31127838..31127916, 31128012..31128098) /locus_tag="TCM_025179" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY09806.1" /db_xref="Phytozome:POPTR_0030s00510.1" /db_xref="TAIR:AT3G04890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I8B7" /translation="MAGIGYPNLIPRVNRTTTQSPLNLQRAHGARCCSVAPENEKKTK TPQILRLAVSGVTELLRLFSSSTKDRVDDGLCTREREGISVSDVDEVLRILKSDYENA YFVTGKELYSRNLKLLVPFFDNPSIGLQKIEKGVKVETNFVLATWRLRTFLKLPWKPL ISIDGSTFYELGQKFTIVRHAESWNVSALEAVGQIFTPSFWKAK" CDS join(31124423..31124631,31124749..31124858, 31125145..31125210,31125827..31125909,31127169..31127273) /locus_tag="TCM_025179" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY09804.1" /db_xref="Phytozome:GSVIVT01021847001" /db_xref="TAIR:AT3G04890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TUN0" /translation="MAGIGYPNLIPRVNRTTTQSPLNLQRAHGARCCSVAPENEKKTK TPQILRLAVSGVTELLRLFSSSTKDRVDDGLCTREREGISVSDVDEVLRILKSDYENA YFVTGNFTSAIYAEDCIFEDPTIRFRGKELYSRNLKLLVPFFDNPSIGLQKIEKGVKV ETNFVLATWRLRCFTDIKYLVLHSQQDPLV" gene complement(31128523..31130281) /locus_tag="TCM_025180" /note="dbxref CacaoGD:Thecc1EG025180" mRNA complement(31128523..31130281) /locus_tag="TCM_025180" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025211t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.42 coverage" CDS complement(31128642..31129685) /locus_tag="TCM_025180" /note="paralog of Thecc1EG025211t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09807.1" /translation="MYSLGVVFDPSDRDIVSHYLPMLISGESMSSLGDLQYVIGFEDI YSTKPSVFFDVNNGNGLPFLKSNQRFIFTHRQRISKKNANGKRPRRILESHHYDEKLG VGDSGGYWRSSTAEKPILDEQRKEIGFVRTLNFFEFEDAKKSRKDATKTRWLMHEYRL PGDTFQEWVICKIKDTSRSPHDDYSDSIWEKELFGKLLLPHSDENHDHQDEYQSQIQS STVFNDGNLPSFEVDQLLDDDPFKEVDQLLEINDDNQIQTQSSTVFNNGNLPRYEVDQ LLYAHEKEVSKDDDPFKEVDQLLEINDDDQIADYPFKEMEQLLGMNDNDPIADVDEAL ATMNSYYLQDLLG" gene 31129432..31131297 /locus_tag="TCM_025181" /note="dbxref CacaoGD:Thecc1EG025181" mRNA join(31129432..31129692,31130345..31130391, 31130475..31130521,31130690..31131297) /locus_tag="TCM_025181" /product="RHO-related from plants 2-like protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400021156" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000166t1" /inference="similar to AA sequence:Phytozome:POPTR_0007s09170.2" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.43 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc3892t2" CDS join(31129642..31129692,31130345..31130391, 31130475..31130521,31130690..31131048) /locus_tag="TCM_025181" /note="paralog of Thecc1EG000166t1" /codon_start=1 /product="RHO-related from plants 2-like protein" /protein_id="EOY09808.1" /db_xref="Phytozome:POPTR_0007s09170.2" /db_xref="TAIR:AT1G20090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4J3B2" /translation="MSRSEGSKTTPREYIVKYICYSYELISCASRFGLSLLGIAFLQS LSSQGNVAIETVQGAALDFILTHSLIAQKLMVSWLKPKCMVYIISRLKNIKKWIPELK HYASGVPIIILVGTKLDLGDGKQFLIDHAGAMLISAAPGEELRKLIGSSAYIDCSSKT QQNVKAA" gene complement(31132735..31133699) /locus_tag="TCM_025183" /note="dbxref CacaoGD:Thecc1EG025183" mRNA complement(31132735..31133699) /locus_tag="TCM_025183" /product="Translation protein SH3-like family protein" /inference="alignment:exonerate-protein:2:frave:gene05358" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000792t1" /inference="similar to AA sequence:Phytozome:POPTR_0007s09770.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.46 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9691t1" CDS complement(31133073..31133513) /locus_tag="TCM_025183" /note="paralog of Thecc1EG000792t1" /codon_start=1 /product="Translation protein SH3-like family protein" /protein_id="EOY09809.1" /db_xref="Phytozome:POPTR_0007s09770.1" /db_xref="TAIR:AT3G49910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P51414" /translation="MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSSDLRSKYNV RSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSK VVITKLRLDKDRKSLLDRKAKGRAAADKDKGTKFTAEDIMQSVD" gene complement(31133681..31141222) /locus_tag="TCM_025184" /note="dbxref CacaoGD:Thecc1EG025184" mRNA complement(join(31133681..31134467,31135389..31135514, 31135590..31135835,31136720..31136839,31137564..31137877, 31137978..31138103,31138254..31138353,31139309..31139443, 31140608..31141222)) /locus_tag="TCM_025184" /product="Cytidine/deoxycytidylate deaminase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019077001" /inference="similar to AA sequence:Phytozome:GSVIVT01019077001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1370t7" mRNA complement(join(31134024..31134467,31135389..31135514, 31135590..31135835,31136720..31136839,31137564..31137877, 31137978..31138103,31138254..31138353,31139309..31139439, 31140608..31140830)) /locus_tag="TCM_025184" /product="Cytidine/deoxycytidylate deaminase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019077001" /inference="similar to AA sequence:ricco:29929.m004573" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9693t1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1370t7" CDS complement(join(31134204..31134467,31135389..31135514, 31135590..31135835,31136720..31136839,31137564..31137877, 31137978..31138103,31138254..31138353,31139309..31139443, 31140608..31141069)) /locus_tag="TCM_025184" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Cytidine/deoxycytidylate deaminase family protein isoform 1" /protein_id="EOY09810.1" /db_xref="Phytozome:GSVIVT01019077001" /db_xref="TAIR:AT3G47390.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9STY4" /translation="MGILPCLALVYKKIVPLIISSKDNNYKAQQQIQQENTRMALSFA LGPYSSSVICRTTNINKHSHAQDLSYIRRAADLSDKSAGFTSPHPNFGCVIATRSGEV AGEGYLYAQGTKPAEGLAVEAAGERCRGATAYLNMEPGDCHWDHTAVSALVQAGITRA VVGIRHPLQHLRGNAIRALRSQGLQVDVLGEDMQSKIVEEARKACLLVNLPLIYRAAS RVPFSVLKYAMTLDGKIAASSGHAAWISSKLSRNRVFELRGRSDAIIVGGNTMRRDDP RLTARHGGGHMPIRIVMSQTLDLPKEANLWDLSEVSTIVVTQRGARRSFQRFLASKGV EVVEFDILNPRDVMEYFHDRGYLSILWECGGTLAASAISSGVIHKVFAFVAPKIIGGK NAPSPVGELGMVEMSQALDLIDVCFEQVGPDMLISGFLQPIPDLTPTIPSEDETFAID PTVIPFESSIIFFYKTWDPYGAFSNFSPHPIQMPDEDSNYATWSSVEHYYQANKFLGI SNPMAQDCIEQIKLAKSPEEAARMGRLTQRRHPNLVRSDWESVKIDVMYRALKCKFSI YPHLNSMLLSTAGSVLVEASPHDLFWGGGRDGEGLNYLGRLLMQLRSEFLGESPAASE STCLAL" CDS complement(join(31134204..31134467,31135389..31135514, 31135590..31135835,31136720..31136839,31137564..31137877, 31137978..31138103,31138254..31138353,31139309..31139329)) /locus_tag="TCM_025184" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29929.m004573" /codon_start=1 /product="Cytidine/deoxycytidylate deaminase family protein isoform 2" /protein_id="EOY09811.1" /db_xref="TAIR:AT3G47390.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9STY4" /translation="MQSKIVEEARKACLLVNLPLIYRAASRVPFSVLKYAMTLDGKIA ASSGHAAWISSKLSRNRVFELRGRSDAIIVGGNTMRRDDPRLTARHGGGHMPIRIVMS QTLDLPKEANLWDLSEVSTIVVTQRGARRSFQRFLASKGVEVVEFDILNPRDVMEYFH DRGYLSILWECGGTLAASAISSGVIHKVFAFVAPKIIGGKNAPSPVGELGMVEMSQAL DLIDVCFEQVGPDMLISGFLQPIPDLTPTIPSEDETFAIDPTVIPFESSIIFFYKTWD PYGAFSNFSPHPIQMPDEDSNYATWSSVEHYYQANKFLGISNPMAQDCIEQIKLAKSP EEAARMGRLTQRRHPNLVRSDWESVKIDVMYRALKCKFSIYPHLNSMLLSTAGSVLVE ASPHDLFWGGGRDGEGLNYLGRLLMQLRSEFLGESPAASESTCLAL" gene complement(31141263..31148775) /locus_tag="TCM_025185" /note="dbxref CacaoGD:Thecc1EG025185" mRNA complement(join(31141263..31141959,31142443..31142651, 31142902..31143163,31143937..31144430,31145129..31145197, 31145295..31145400,31146182..31146205,31148553..31148588, 31148701..31148775)) /locus_tag="TCM_025185" /product="ARM repeat superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s08340.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s08340.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03708t00001" mRNA complement(join(31141556..31141959,31142443..31142651, 31142902..31143163,31143937..31144430,31145129..31145197, 31145295..31145400,31146182..31146205,31146820..31147011)) /locus_tag="TCM_025185" /product="ARM repeat superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s08340.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s08340.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8473t2; inference alignment:Newbler:10:TSA:cgbaB_g03708t00001" CDS complement(join(31141893..31141959,31142443..31142651, 31142902..31143163,31143937..31144430,31145129..31145197, 31145295..31145400,31146182..31146205,31148553..31148566)) /locus_tag="TCM_025185" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="ARM repeat superfamily protein isoform 1" /protein_id="EOY09812.1" /db_xref="Phytozome:POPTR_0013s08340.1" /db_xref="TAIR:AT5G36230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2R678" /translation="MKLSYSKEKPTLGGTRIKTRKRNIAAPLDPAAFADAVVQIYLEN VGDLELVARNIESSDLNFTRYGDTFFEVVFTGGRTQPGTIKPDEGERHPYSIIECEAK REAIFPSVSYIQKILRRRPFLIKNLENVMRKLLQSLELFEENERKKLAIFTALAFSQK LSGLPPETVFQPLLKDNLVAKGLVLSFITDFFKEYLVDNSLEDLISILKRGKMEDNLL EFFPSAKRSAEGFSEHFTKAGLVPLVEYNEKKLFEVKLKEMKSALTTQIAEESEISEV IENVKQRVKDAKLPDIEVVRILWDVIMDAVQWSGKNQQQNANAALRQVKTWAQLLNSF CTSGKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILHWFRKGTNPKG RQTFVKALEPFVNWLEEAEEEE" CDS complement(join(31141893..31141959,31142443..31142651, 31142902..31143163,31143937..31144430,31145129..31145197, 31145295..31145400,31146182..31146205,31146820..31146824)) /locus_tag="TCM_025185" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="ARM repeat superfamily protein isoform 2" /protein_id="EOY09813.1" /db_xref="Phytozome:POPTR_0013s08340.1" /db_xref="TAIR:AT5G36230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2R678" /translation="MSSKEKPTLGGTRIKTRKRNIAAPLDPAAFADAVVQIYLENVGD LELVARNIESSDLNFTRYGDTFFEVVFTGGRTQPGTIKPDEGERHPYSIIECEAKREA IFPSVSYIQKILRRRPFLIKNLENVMRKLLQSLELFEENERKKLAIFTALAFSQKLSG LPPETVFQPLLKDNLVAKGLVLSFITDFFKEYLVDNSLEDLISILKRGKMEDNLLEFF PSAKRSAEGFSEHFTKAGLVPLVEYNEKKLFEVKLKEMKSALTTQIAEESEISEVIEN VKQRVKDAKLPDIEVVRILWDVIMDAVQWSGKNQQQNANAALRQVKTWAQLLNSFCTS GKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILHWFRKGTNPKGRQT FVKALEPFVNWLEEAEEEE" mobile_element complement(31153583..31153692) /note="source:scaffold_5_CACTA_0607 5148 5258" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31153746..31153839) /note="source:scaffold_5_CACTA_0607 5098 5184" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31156204..31156915 /note="source:CACAO_M_E44105_F73_scaffold_5 1 712" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 31157514..31158942 /note="source:CACAO_M_E44105_F73_scaffold_5 713 2141" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 31159920..31164657 /locus_tag="TCM_025188" /note="dbxref CacaoGD:Thecc1EG025188" mRNA join(31159920..31160460,31161974..31162029, 31162800..31162891,31163560..31163662,31163750..31163887, 31164133..31164657) /locus_tag="TCM_025188" /product="Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019089001" /inference="similar to AA sequence:ricco:29929.m004583" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02189t00001_C1" CDS join(31160198..31160460,31161974..31162029, 31162800..31162891,31163560..31163662,31163750..31163887, 31164133..31164386) /locus_tag="TCM_025188" /note="dbxref ricco:29929.m004583" /codon_start=1 /product="Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2" /protein_id="EOY09814.1" /db_xref="TAIR:AT5G16440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q38929" /translation="MSSLINTASAFRLSRSLASSSSFSCPQPRLFLSSSFALPPRPIP HFSLTSLRASLSFRTEAASATATMGDAPDAGMDAVQRRLMFEDECILVDENDNVVGHE SKYNCHLWEKILTGNMLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLY RESELIGENFLGVRNAAQRKLLDELGIPAEDVPVDQFIPLSRILYKAPSDGKWGEHEL DYLLFIVRDVNVHPNPDEVADVKYVNRDQLKELLRKADAGEGGLKLSPWFRLVVDNFL FKWWDHVEKGTLKEATDMETIHKLT" gene complement(31165816..31166332) /locus_tag="TCM_025189" /note="dbxref CacaoGD:Thecc1EG025189" mRNA complement(31165816..31166332) /locus_tag="TCM_025189" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.44 coverage" CDS complement(31166051..31166263) /locus_tag="TCM_025189" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09815.1" /translation="MRRHLRRLSRARRDLQKLLPVFLQKMQNLQQHLRRQMGRRVVTQ QHLTHQRKLGNLLLRVPSPAANFLVD" gene 31170432..31174965 /locus_tag="TCM_025190" /note="dbxref CacaoGD:Thecc1EG025190" mRNA join(31170432..31170755,31171510..31172151, 31173167..31173552,31173798..31174318,31174431..31174965) /locus_tag="TCM_025190" /product="Glucose-methanol-choline oxidoreductase family protein" /inference="alignment:exonerate- protein:2:TAIR:AT5G51950.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025200t1" /inference="similar to AA sequence:ricco:30147.m014326" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1737t6" CDS join(31170662..31170755,31171510..31172151, 31173167..31173552,31173798..31174318,31174431..31174470) /locus_tag="TCM_025190" /note="dbxref ricco:30147.m014326; paralog of Thecc1EG025200t1" /codon_start=1 /product="Glucose-methanol-choline oxidoreductase family protein" /protein_id="EOY09816.1" /db_xref="TAIR:AT5G51950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYV8" /translation="MGFKYAWSSWSLLVLVFAAEFALHGFSYGEKAPNYSFIQEATSA PIVSFYDYIVIGGGTAGCPLAATLSRNANVLVLERGGSPYVNTTKIRKENFLSTLTDR SPDSFSEAFISEDGVANDRPRVLGGGTVINAGFYSHAETSFLKQNGMDEALANDSYEW VERKLVHKPVVLQWQSAVTDGLLEAGVVPNNGFTYDHINGTKIGGSILDGNGNRHTAA DLLEYADPKRIKVYLHAVVHNIVFTTKVGSRPKAQGVIFYDAKGARHTAFLKSGSRSE IISSAGAIGSPQLLMLSGIGPAPQLEALGIKVVLNQTLVGQGMADNPLNGLIIPSPVP VELSLPEIVGITELSNYIESASGFDFSALSVAQSPANFNQVEKSPMASQEAMDNSPTN LGFIVEKFNGPISEGYLELQSTNVSDNPKVRFNYFQAPEDLRKCVQGVKTIINVVNSK SYSRFRYSNTTTQDLLNMMASMSVNLRPRHPNSTVSLEQYCIDTVMTFWHYHGGCQVG KVVDRDYKVFGVDRLRVIDGSTFNFSPGTNPQATLMMLGRYMGRRILQSRGK" gene 31176194..31181263 /locus_tag="TCM_025191" /note="dbxref CacaoGD:Thecc1EG025191" mRNA join(31176194..31176549,31177332..31177768, 31177945..31177966,31178063..31178819,31180927..31181263) /locus_tag="TCM_025191" /product="Glucose-methanol-choline (GMC) oxidoreductase family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma06g38570.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025203t1" /inference="similar to AA sequence:Phytozome:Glyma20g29370.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.14 coverage" CDS join(31176366..31176549,31177332..31177768, 31177945..31177966,31178063..31178685) /locus_tag="TCM_025191" /note="paralog of Thecc1EG025203t1" /codon_start=1 /product="Glucose-methanol-choline (GMC) oxidoreductase family protein, putative" /protein_id="EOY09817.1" /db_xref="Phytozome:Glyma20g29370.1" /db_xref="TAIR:AT5G51950.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IF15" /translation="MQPIPYKRPRSFWILIEFKELFEVVSYRKNMGLKYAWSSWRFLL LVFIAEFAFHGFTYGEKAPNYSFIQEATSAPQVSLYDYIIIGGGTAGCPLAATLSRNA TVLVLGRWGSPYVNTTKIRIENALSTLTDTSPDSFSEAFISEDGVANIRARVLGGGTV INAGFYSRAETFFLMQKGLNEALANDSYEWVERKLVSKPVVLQWQSAKITFTTKAFNK FTIMAVGLRPKAQGVIFYDAQGVKHTAFLKNESMSEIISSAGAIGSPQLLLLSGIGPA PQLEALGIKVVLNHAIVGQGMADNPLNGLMIPSPVPVQLSLVISVGITKLGNYIEFGS GFDNPEVRFNYYQAPEDLRKCVPGMKTVIKVVNSKSYSRFRDNNTTTQDLLNMMASMP LTLRPKHPNSTASLEQYCIDTVMTIWHYH" gene complement(31180711..31191136) /locus_tag="TCM_025192" /note="dbxref CacaoGD:Thecc1EG025192" mRNA complement(join(31180711..31180740,31188478..31188782, 31189046..31189069,31190333..31191136)) /locus_tag="TCM_025192" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" mobile_element 31182003..31186098 /note="source:INTACT641_F282_scaffold_1-int 83 4165" /mobile_element_type="retrotransposon:LTR/Copia" CDS complement(join(31188622..31188782,31189046..31189069, 31190333..31190690)) /locus_tag="TCM_025192" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09818.1" /translation="MNPKTKKNKHLVWRKHRMRRRRETDKWFVKKEMRRGERREEEKE EVVMANNFFWSYTNKPHALRRRQILFQYHQIKELFGLNPLAFLKISVVVLLQLWTAMD NFGRLDWILINFEYILLGMDAVDDLGYGTSGTYSIKSTRYVSPLLWFPSSMCIGRVIR LLTLLQAMELIDHRTSWFGG" mobile_element 31190979..31191201 /note="source:INTACT641_F282_scaffold_1-int 1 270" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 31192448..31195168 /note="source:CACAO_M_E44107_F73_scaffold_5 1 2710" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(31197080..31218419) /locus_tag="TCM_025194" /note="dbxref CacaoGD:Thecc1EG025194" mRNA complement(join(31197080..31197690,31197759..31197856, 31197921..31197952,31198070..31198147,31213732..31213793, 31217202..31217381,31218366..31218419)) /locus_tag="TCM_025194" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004414t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.63 coverage" CDS complement(join(31197412..31197690,31197759..31197856, 31197921..31197952,31198070..31198128)) /locus_tag="TCM_025194" /note="paralog of Thecc1EG004414t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09819.1" /translation="MSTWCIMMIPGSAFFHGWRWFPNVGTTPNRWIEPLGCSDDYGVG GILRNEHGDVFILFSKSIGVVYVSSPLIESDNQNVVNWITSPNKVPWRPRQLIVQNLN ILGKIKKRDIKHTLRSANNEANTLAKEGVLRTVDFLWSLDVGSVQVMEVINPA" mobile_element 31198443..31199439 /note="source:CACAO_M_E57859_F86_scaffold_9 6263 7259" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(31199540..31201436) /note="source:CACAO_M_E4460_F86_scaffold_2 1 1898" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 31201315..31202078 /locus_tag="TCM_025196" /note="dbxref CacaoGD:Thecc1EG025196" mRNA 31201315..31202078 /locus_tag="TCM_025196" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.31 coverage" CDS 31201566..31201847 /locus_tag="TCM_025196" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09820.1" /translation="MSSTSFILLWGFPFFPAGCRWLLVAVFLLSSSFDFDLLCCPSSF LPSLSLQQAVFVFCWCLLLPAVEKFFHSLVFSFFFYELFLDLLFLIFFL" gene 31202242..31203684 /locus_tag="TCM_025197" /note="dbxref CacaoGD:Thecc1EG025197" mRNA join(31202242..31202736,31202876..31203684) /locus_tag="TCM_025197" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.67 coverage" CDS join(31202732..31202736,31202876..31203287) /locus_tag="TCM_025197" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09821.1" /translation="MINEVSPWKLHSPVYKSRQHENSMHQNKISTSLYNGSPRVRIRR DAGRKGRLPMKRGQFVGGLESGFLIRPIRGERTPVNGAKLDSGNKRERERGGIEPALQ VWGELPLVKEEGELSVEAFREKAEKKLLERETRGKK" mobile_element complement(31203182..31203677) /note="source:INTACT622F_F362_scaffold_4-int 11470 11975" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(31203896..31205134) /note="source:INTACT622F_F362_scaffold_4-int 10274 11510" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(31204997..31206525) /locus_tag="TCM_025198" /note="dbxref CacaoGD:Thecc1EG025198" mRNA complement(join(31204997..31205661,31206079..31206525)) /locus_tag="TCM_025198" /product="Fatty acid desaturase family protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029899t1" /inference="similar to AA sequence:ricco:29851.m002395" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.27 coverage" CDS complement(31205222..31205617) /locus_tag="TCM_025198" /note="dbxref ricco:29851.m002395; paralog of Thecc1EG029899t1" /codon_start=1 /product="Fatty acid desaturase family protein" /protein_id="EOY09822.1" /db_xref="TAIR:AT4G04930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZPH4" /translation="MDMDVPSHTEAYLVTNVVTKAVWVIFQLFFYALRPLFHKPKPSG YWEFINLFIQIALDATLIYFWGWKPLAYLILSTFVGGGMHPMAGHFIAEHYVFKLDQE TYSYYGPLNLLTWSVGYHNVHIGKILTER" gene complement(31206319..31207837) /locus_tag="TCM_025199" /note="dbxref CacaoGD:Thecc1EG025199" mRNA complement(31206319..31207837) /locus_tag="TCM_025199" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029007t1" /note="quality class is medium-utrpoor, express is weak, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.23 coverage" CDS complement(31207014..31207265) /locus_tag="TCM_025199" /note="paralog of Thecc1EG029007t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09823.1" /translation="MTEYGRTRLRRRFGQIWHSTARSGSGKHRIWCFLTRSHDWIWHS TAKSNRGEAPIWRHSGQIRPHGAPDRRFVTPVAFPATGS" gene 31208682..31213719 /locus_tag="TCM_025200" /note="dbxref CacaoGD:Thecc1EG025200" mRNA join(31208682..31209334,31210416..31211057, 31212133..31212410,31212656..31213176,31213289..31213719) /locus_tag="TCM_025200" /product="Glucose-methanol-choline oxidoreductase family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma0615s00200.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025190t1" /inference="similar to AA sequence:ricco:30147.m014326" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7558t1" CDS join(31209142..31209334,31210416..31211057, 31212133..31212410,31212656..31213176,31213289..31213328) /locus_tag="TCM_025200" /note="dbxref ricco:30147.m014326; paralog of Thecc1EG025190t1" /codon_start=1 /product="Glucose-methanol-choline oxidoreductase family protein, putative" /protein_id="EOY09824.1" /db_xref="TAIR:AT3G56060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYV8" /translation="MQSTPYYKRACSFLYLDGFVVPRALCSTSYRKTMGFKYSWSSWR FLALVFAVEFAFHGFSYGEEAPKFGFIQDATFAPAVSYYDYIIIGGGTAGCPLAATLS QNANVLVLERGGSQYVNITKIRIENFLSTLTDNSPDSFSEAFISKDGVPNNRARVLGG GTVINGGFYSRAETCFLKQNGMDEALANDSYEWVEKKLVHKPVVLQWQSAVRDGLLEA GVLPYNGFTYDHINGTKTGGSILDGNGNRHTAADLLEYADPKRIKVYLHAVVHKIMFT TKGAIGSPQLLMLSGIGPAPQLEALGIKVVLNQTLVGQGMADNPLNGLIIPSPVPVEL SFPEIVGITELSNYIESTSGFDFSALSVAQSPANFNQVEKSPMASQEAMDNSPTNLGF IVEKFNGPISEGYLELQSTNVSDNPKVRFNYFQAPEDLRKCVQGVKTIINVVNSKSYS RFRYSNTTTQDLLNMMASMPVNLRPRHPNSTVSLEQYCIDTVMTFWHYHGGCQVGKVV DRDYKVFGVDRLRVLDGSTFNFSPGTNPQATLMMLGRYMGRRILQSRGK" gene 31214100..31214854 /locus_tag="TCM_025201" /note="dbxref CacaoGD:Thecc1EG025201" mRNA 31214100..31214854 /locus_tag="TCM_025201" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.67 coverage" CDS 31214409..31214612 /locus_tag="TCM_025201" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09825.1" /translation="MMMLKVILLESHRHGHTNREVSKNPKPTVVDRSGEDKIVAELMD GKKKLWLRKKPKKCWCKWGLNEI" mobile_element 31214580..31216407 /note="source:CACAO_M_E49809_F2_scaffold_7 1 1830" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 31217551..31218102 /note="source:CACAO_on_E565_scaffold_5 1 535" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(31218694..31219158) /note="source:CACAO_on_E203_scaffold_7 1 434" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(31222520..31223230) /note="source:CACAO_on_SS_E135_scaffold_10 5031 5517" /mobile_element_type="transposon:TIR/Mutator" mobile_element 31223146..31223242 /note="source:scaffold_6_CACTA_0700 9998 10098" /mobile_element_type="transposon:TIR/CACTA" gene 31224867..31230606 /locus_tag="TCM_025203" /note="dbxref CacaoGD:Thecc1EG025203" mRNA join(31224867..31225427,31226563..31227204, 31228747..31229784,31229869..31230606) /locus_tag="TCM_025203" /product="Glucose-methanol-choline oxidoreductase family protein isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025190t1" /inference="similar to AA sequence:ricco:30147.m014326" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:PASA:2:TSA:puevd3b024381t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7562t1" mRNA join(31225312..31225427,31226563..31227204, 31228747..31229147,31229258..31229784,31229869..31230606) /locus_tag="TCM_025203" /product="Glucose-methanol-choline oxidoreductase family protein isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025190t1" /inference="similar to AA sequence:ricco:30147.m014326" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7562t1" CDS join(31225334..31225427,31226563..31227204, 31228747..31229147,31229258..31229784,31229869..31229908) /locus_tag="TCM_025203" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30147.m014326; paralog of Thecc1EG025190t1" /codon_start=1 /product="Glucose-methanol-choline oxidoreductase family protein isoform 1" /protein_id="EOY09826.1" /db_xref="TAIR:AT3G56060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYV8" /translation="MGLKYSWSSWRFLALVFVVEFAFHGFSYGEKAPNISSIQEATSA PAVAYYDYIIIGGGTAGCPLAATLSGNANVLVLERGGSPYVNTTKIRTENFLSTLRDN SPESFSEAFISEDGVPNNRPRALGGGTVINAGVYSHAETFFLKQNGMDEALANDSYEW VERKLVYKPIVLQLQSAVRDGLLEAGVLPYNGFTYDHINGTKTVGSILDRNGNRHTAA DLLEYADPKRIKVYLHAVVHKITFTRKDGSRPKAEGVIFYDAKGIRHTALLKNGSMSE IISSAGAMGSPQLLLLSGIGPAPQLEALGIEVVLHQAMVGQGMADNPQNSLVIPSPSP LEFSLPAIVGITKFGSYIESSSGFDYSALSVAQTLTNHFTTNFNQDGESFMAFRDTIT NLPTNLANIVEKVNGPISKGYLELRSTNVSDNPKVMFNYFQAPEDLRKCVQGMKTIIN VVDSKSYSRFRYSNTTTQDLLNMMTRTRMLVSTRPNHPNSTDSLKQFCINTVRTLWHY HGGCQVGKVVDRDYKVFGVDNLRVIDGSTFNFSPGTNPQATLMMLGRYMGRRILQSRT R" CDS join(31225334..31225427,31226563..31227204, 31228747..31229222) /locus_tag="TCM_025203" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30147.m014326; paralog of Thecc1EG025190t1" /codon_start=1 /product="Glucose-methanol-choline oxidoreductase family protein isoform 2" /protein_id="EOY09827.1" /db_xref="TAIR:AT5G51950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VYV8" /translation="MGLKYSWSSWRFLALVFVVEFAFHGFSYGEKAPNISSIQEATSA PAVAYYDYIIIGGGTAGCPLAATLSGNANVLVLERGGSPYVNTTKIRTENFLSTLRDN SPESFSEAFISEDGVPNNRPRALGGGTVINAGVYSHAETFFLKQNGMDEALANDSYEW VERKLVYKPIVLQLQSAVRDGLLEAGVLPYNGFTYDHINGTKTVGSILDRNGNRHTAA DLLEYADPKRIKVYLHAVVHKITFTRKDGSRPKAEGVIFYDAKGIRHTALLKNGSMSE IISSAGAMGSPQLLLLSGIGPAPQLEALGIEVVLHQAMVGQGMADNPQNSLVIPSPSP LEFSLPAIVGITKFGSYIESSSGFDYSALSVAQTLTNHFTTNFNQVFTHCYTLVDTVL VYKKLNQLECV" gene complement(31230860..31233010) /locus_tag="TCM_025204" /note="dbxref CacaoGD:Thecc1EG025204" mRNA complement(join(31230860..31231618,31232813..31233010)) /locus_tag="TCM_025204" /product="Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019090001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030502t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400051386" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g06270t00001" CDS complement(31231105..31231605) /locus_tag="TCM_025204" /note="paralog of Thecc1EG030502t1" /codon_start=1 /product="Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase" /protein_id="EOY09828.1" /db_xref="Phytozome:PGSC0003DMP400051386" /db_xref="TAIR:AT5G16450.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N146" /translation="MALVTTAEVCDANPQLIVSGELRALQPIFQIYGRRPVFSGPIVT LKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCI RDVDEINGCDIGVRALHSHPMKANKKGIGEKHVPITIAGTRICNGEWLYADTDGILIS KTELSV" gene 31234060..31234780 /locus_tag="TCM_025205" /note="dbxref CacaoGD:Thecc1EG025205" mRNA 31234060..31234780 /locus_tag="TCM_025205" /product="Homeodomain GLABROUS 8, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044944t1" /inference="similar to AA sequence:Phytozome:GSVIVT01035238001" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS 31234200..31234685 /locus_tag="TCM_025205" /note="paralog of Thecc1EG044944t1" /codon_start=1 /product="Homeodomain GLABROUS 8, putative" /protein_id="EOY09829.1" /db_xref="Phytozome:GSVIVT01035238001" /db_xref="TAIR:AT3G03260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H3K4" /translation="MDIARGNIGSSDDEHKASTCHEKGRIYHRHSTHQIQTLEAFFKE CAHPDENQRRELSKELGLEPKQIKFWFQNKRTQTKARKERAENSILRASKESLLYENT AMREALAKMVCVCCGSPLLPEPQAGHGLHQLELENTQLKQGLEKLTKFLANYINMHDH Y" mobile_element complement(31234949..31235009) /note="source:CACAO_M_E58268_F98_scaffold_9 620 677" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 31234972..31235099 /note="source:scaffold_10_CACTA_0127 10869 11002" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31234996..31235339) /note="source:scaffold_4_CACTA_0506 6715 7061" /mobile_element_type="transposon:TIR/CACTA" gene 31242142..31244728 /locus_tag="TCM_025206" /note="dbxref CacaoGD:Thecc1EG025206" mRNA join(31242142..31242622,31243448..31244728) /locus_tag="TCM_025206" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.36 coverage" CDS join(31242610..31242622,31243448..31244325) /locus_tag="TCM_025206" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09830.1" /translation="MATRGISMTKEDEGEISPEIITVSELNYYIERVDQKMIDLVHKN GKTGEDETNKTFRAETEVLKKDQLSVKRRVNEFMTSQYCQLDDRTCTNLDPLTSLCEE SKTLKLEDDEIKHNGLIGLSLGFDKANEHVLKSGCGNQGEDQLKVKSAGLTKDKDHVK KWLNQFDMQFNFSFGQWEENEFTLISESVDSEEEEEVEEPKQEGDSKERFLAKLIEYD SIDELEDEEFICNGGEGCQELKKQDTVEMEDDWMNYLQLDGFDQEFDTNIDGLKEEMS AMMFQDGKYKRVKYNEKKSS" mobile_element complement(31245584..31245664) /note="source:scaffold_5_CACTA_0607 6906 6986" /mobile_element_type="transposon:TIR/CACTA" gene 31246309..31252542 /locus_tag="TCM_025207" /note="dbxref CacaoGD:Thecc1EG025207" mRNA join(31246309..31247359,31247578..31247757, 31247944..31248201,31248606..31248740,31249352..31249639, 31250345..31250479,31251802..31252542) /locus_tag="TCM_025207" /product="Class II aaRS and biotin synthetases superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Sb09g003930.1" /inference="similar to AA sequence:frave:gene31205" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04344t00001" CDS join(31246436..31247359,31247578..31247757, 31247944..31248201,31248606..31248740,31249352..31249639, 31250345..31250479,31251802..31252101) /locus_tag="TCM_025207" /note="dbxref frave:gene31205" /codon_start=1 /product="Class II aaRS and biotin synthetases superfamily protein, putative" /protein_id="EOY09831.1" /db_xref="TAIR:AT3G02760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IYF8" /translation="MSALLDSCKLLDESSSALSTIAVVVAALSCEAARANLSAFDLTD SGDGSVAKDDIGVASDIKVLLNGSKLVASSNKGDDKINIDSFSKIPVVNGNVREAVKS LHSVIRVVSNTGDKLGGKVLHLGFELRNLGESSLERVRLNLGSVGIEGIKGIFEKDCL SEESLRNGVQLAVEAGLEKDYLKLVKEVDLVLGIVWKIVAWEAVTAFFVLEGGEVLSE KSGGQRGEADGGNVKAEKKKKKKILLGKGTSFIVEVIKNSVMSKVEGLEKVVEDLLSF LDPKSPEFDGLLKKMKEILESNESRRIPKTPKGTRDFAKEQMAIRKKAFSIITKVFER HCATALDTPAFELKETLTGKYGEDSKLIYDLADQGGELCSLRYDLTVPFSRYVAMNGL MSFKRYHIDKVWRRDNPSKGRYREFYQCDFDIAGQYEKMGPDFEVVRILSEVLNSLNI GDYEIKLNHRKLLDGVLEICGVPPAKFRTICSSIDKLDKQSFEQVKKEMVEEKGLSVE TADKIGTFVKIRGPPLELLSKIMGGSEGTELLKHNASKEALGDLSVLFEALDKSRCID KVVFDLSLARGLDYYTGVIFEAAFKGGVQVGSIGAGGRYDNLIGNFGTKQVPAVGMSL GIERVLTIMEEKAQNQAVRATETQLLVAVLGDKLSIAAELVSELWDVDVKAEYKVHKK VMKHIEYAINSKIPWMIIVGERELNEGIVKLKNIETTEEEVIPRSKLVEEVQQRLKP" gene 31253597..31259961 /locus_tag="TCM_025208" /note="dbxref CacaoGD:Thecc1EG025208" mRNA join(31253597..31255437,31256452..31256584, 31256923..31256991,31257087..31257123,31257789..31257862, 31258618..31258719,31258818..31259313,31259582..31259961) /locus_tag="TCM_025208" /product="Tetratricopeptide repeat-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s28610.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026734t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s04770.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.44 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1994t2" CDS join(31253631..31255437,31256452..31256584, 31256923..31256991,31257087..31257123,31257789..31257862, 31258618..31258719,31258818..31258839) /locus_tag="TCM_025208" /note="paralog of Thecc1EG026734t1" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative" /protein_id="EOY09832.1" /db_xref="Phytozome:POPTR_0005s04770.1" /db_xref="TAIR:AT1G12700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9P5D9" /translation="MKWKLWKTTAFLYHLQQIGSLHSVLHVQKRPFYFHFLSSSSSSS PFSSIASTKTFKKPAKGNGKKYEFHNIVDALTLFNLLAHASPRPCIVEFNKLLGAIVG MKHYAIVVSLCKQMELLGIIHDAYTLNILINCFCHLRRVDFGFSVLGKMLKLGYKPHL VTFSTLVKGFCMEHKVAQAARLFNEMVLTGYQPDLYIYTIIVNGFCKIGDTSGAVRML RKMEERGFQPDIVAFSAVIDSLCKNKLITEALDLASEMKGKGIQADVVTYSSLIRAMC SSGRWDDAMRLFNEMDCKNLKPNVVTYNILVDALCKEGKVSEALGIFEIMTRSGIQPN VVTYSELINGYRLRNEMDEARKVFDSMLTCGCEPNVFSYNIMINGYCKTNRIDEALKL FHEMTQKGPTPDIATYTTLMSGMFQVGRLLDAQELFEDMCSCGQVPNSMTYSVLLDGV CKHGRIDEALRLFQAMQNSGTEPYIVHYNILIDGMIEAGRHKVAWELFSNIFVTGLKP TLPTYNIMIKGLCNKGFPEKAYDLFRKMEVDDCLPNSISYNITIRGFLQSNDMLRAMQ ILHEMASKGFSTDASTANMLVDLLSVNGEDQSTYEISGGDKSYLLRQQRICTYLKITG PPLKLLLEIMEGSDLLKQSALLRYEVHYAHIKPLLSAKQIALVHCCELLWIGSRFEHQ VGAIAAGRKFLPFLAVRMILGIFFGSGEVQVYRQSGFHLKLNRGLMLKSYLTLLSKEY SPQFLNS" gene complement(31260680..31261769) /locus_tag="TCM_025209" /note="dbxref CacaoGD:Thecc1EG025209" mRNA complement(join(31260680..31261050,31261722..31261769)) /locus_tag="TCM_025209" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025245t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS complement(31260710..31260964) /locus_tag="TCM_025209" /note="paralog of Thecc1EG025245t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09833.1" /translation="MQCLKTLEGELEDKLYFGGEGIGFMDVGLVPFTPGGNFSIKAGC PKLPTWAKRCKENESVFKALSHPHKIYGFFLEHKEKLELN" gene 31262660..31268303 /locus_tag="TCM_025210" /note="dbxref CacaoGD:Thecc1EG025210" mRNA join(31262660..31262826,31263376..31263482, 31263572..31263624,31263714..31263762,31263855..31263915, 31264102..31264179,31266060..31266092,31266176..31266222, 31266391..31266470,31266630..31266700,31267237..31267351, 31267612..31268303) /locus_tag="TCM_025210" /product="Zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein" /inference="alignment:exonerate- protein:2:Phytozome:Sb01g037990.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025166t1" /inference="similar to AA sequence:Phytozome:POPTR_0002s20230.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.34 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7600t1" CDS join(31262819..31262826,31263376..31263482, 31263572..31263624,31263714..31263762,31263855..31263915, 31264102..31264179,31266060..31266092,31266176..31266222, 31266391..31266470,31266630..31266700,31267237..31267351, 31267612..31267773) /locus_tag="TCM_025210" /note="paralog of Thecc1EG025166t1" /codon_start=1 /product="Zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein" /protein_id="EOY09834.1" /db_xref="Phytozome:POPTR_0002s20230.1" /db_xref="TAIR:AT4G02220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93VB4" /translation="MVRKIISLKMIENCDSDGGCLKCFHRCAKLDVKSMKMQEMQGQL FSPGLEYCRNTQIVRHAESWNVSALEAVVAGRMSKVELKLFLLFEILVRCTPTCNNEL QLNIVSEYQILLKYSNSYELISCAFRFGLSLLGIAFLQSLSSQGNVAIETVQGAALDF ILTHSLIAQKLMGDADKKSWASFQERIAKAPEQVLRYCRSASSKPLWPLSGGRPSKAD IARCSYYGGPLCFEFQILPQLVYFFGVKDEDHSLDWATIAVYTCEASCEGIGYKEEFA WVQLSPSTNFP" gene complement(31264226..31265451) /locus_tag="TCM_025211" /note="dbxref CacaoGD:Thecc1EG025211" mRNA complement(31264226..31265451) /locus_tag="TCM_025211" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025180t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.44 coverage" CDS complement(31264341..31265384) /locus_tag="TCM_025211" /note="paralog of Thecc1EG025180t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09835.1" /translation="MYSLGVVFDPSDRDIVSHYLPMLISGESMSSLGDLQYVIGFEDI YSTKPSVFFDVNNGNGLPFLKSNQRFIFTHRQRISKKNANGKRPRRILESHHYDETLG VGDSGGYWRSSTAEKPILDEQQKEIGFVRTLNFFEFKDEKKCRKDATKTRWLMHEYRL PGDTFQEWVICKIKDTSRSPHDDYSDSIWEKELFGKLLLPHSDENYDHQDEYQSQIQS STVFNDGNLPSFEVDQLLDDDPFKEVDQLLEINDNNQIQTQSSTVFNNGNLPRYEVDQ LLYAHEKEVSKDDDPFKEVDQLLEINDDNQIADYPFKEMEQLLGMNDNDPIADVDEAL ATMNSYYLQDLLG" gene complement(31269388..31270611) /locus_tag="TCM_025212" /note="dbxref CacaoGD:Thecc1EG025212" mRNA complement(31269388..31270611) /locus_tag="TCM_025212" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025180t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.36 coverage" CDS complement(31269503..31270546) /locus_tag="TCM_025212" /note="paralog of Thecc1EG025180t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09836.1" /translation="MYSLGVVFDPSDRDIVSHYLPMLISGESMSSLGDLQYVIGFADI YSTKPSVFFDVNNGNGLPFLKSNQRFIFTHRQRISKKNANGKRPRRILESHHYDEKLG VGDSGGYWRSSTAEKPILDEQRKEIGFVRTLNFFEFEDAKKSRKDATKTRWLMHEYRL SGDTFQEWVICKIKDTSGSPHDEYSDSIWEKELFGKLLLPHSDENHHHQDEYQSQIQS STVFNDGNLPSYEVDQLLDDDPFKEVDQLLEINDDNQIQTQSFTVFNKGNLPRYEVDQ LLYAHEKEISKDDDPFKEVDQLLEINDDSQIADYPFKEMEQLLGMNDNDPIADVDEAL ATMNSYYLSDLLD" mobile_element 31271340..31271400 /note="source:CACAO_M_S_E31935_F231_scaffold_3 1159 1226" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(31271343..31271396) /note="source:CACAO_M_E1785_F369_scaffold_1 1190 1240" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(31271390..31271617) /note="source:scaffold_2_CACTA_0245 849 1070" /mobile_element_type="transposon:TIR/CACTA" gene complement(31272329..31278831) /locus_tag="TCM_025213" /note="dbxref CacaoGD:Thecc1EG025213" mRNA complement(join(31272329..31272685,31272793..31273036, 31273201..31273278,31273365..31273518,31273627..31273739, 31273811..31273910,31275404..31275600,31275709..31275765, 31275853..31275957,31276047..31276154,31278245..31278442, 31278538..31278831)) /locus_tag="TCM_025213" /product="26S proteasome regulatory subunit (RPN5), putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s07080.1" /inference="similar to AA sequence:Phytozome:POPTR_0007s07080.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00513t00002" mRNA complement(join(31272329..31273036,31273201..31273278, 31273365..31273518,31273627..31273739,31273811..31273910, 31275404..31275600,31275709..31275765,31275853..31275957, 31276047..31276154,31278245..31278442,31278538..31278831)) /locus_tag="TCM_025213" /product="26S proteasome regulatory subunit (RPN5), putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s07080.1" /inference="similar to AA sequence:Phytozome:POPTR_0007s07080.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:PASA:2:TSA:puevd3b024392t1a3; alternateUTRof:Thecc1EG025213t1; inference alignment:Newbler:10:TSA:cgbaP1_g00513t00002" mRNA complement(join(31272421..31272685,31272793..31273039, 31273201..31273278,31273365..31273518,31273627..31273739, 31273811..31273910,31275404..31275600,31275709..31275765, 31275853..31275957,31276047..31276154,31278245..31278442, 31278538..31278689)) /locus_tag="TCM_025213" /product="26S proteasome regulatory subunit (RPN5), putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s07080.1" /inference="similar to AA sequence:Phytozome:POPTR_0007s07080.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7860t1; inference alignment:Newbler:10:TSA:cgbaP1_g00513t00002; inference alignment:Newbler:10:TSA:cgbaP2_g00531t00002" mRNA complement(join(31272465..31272684,31272851..31273036, 31273201..31273278,31273365..31273518,31273627..31273739, 31273811..31273910,31275404..31275600,31275709..31275765, 31275853..31275957,31276047..31276154,31278245..31278442, 31278538..31278608)) /locus_tag="TCM_025213" /product="26S proteasome regulatory subunit (RPN5), putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s07080.1" /inference="similar to AA sequence:Phytozome:POPTR_0007s07080.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00531t00002; inference alignment:Newbler:10:TSA:cgbaP2_g00531t00002; inference alignment:Newbler:10:TSA:cgbaP1_g00513t00002" CDS complement(join(31272658..31272684,31272851..31273036, 31273201..31273278,31273365..31273518,31273627..31273739, 31273811..31273910,31275404..31275600,31275709..31275765, 31275853..31275957,31276047..31276154,31278245..31278442, 31278538..31278540)) /locus_tag="TCM_025213" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="26S proteasome regulatory subunit (RPN5), putative isoform 3" /protein_id="EOY09839.1" /db_xref="Phytozome:POPTR_0007s07080.1" /db_xref="TAIR:AT5G09900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FGF7" /translation="MDGNKGNLEAAIEQLLNVEKQMRFAGDVAETKKAVTDILQLCFE AKDWKSLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDETPDLETRIELIKTLNSVSAG KIYVEIERARLIKKLAKIKEEQCLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRL CLDRQDYVRAQILSRKISPRVFDADTSKEKKKPKEGDNVVEEPPADIPSLLELKRIYY ELMIRYYFHNNDYLEICRCYKAIYEIPSIRENPSQWIPVLRKICWYLILAPHDPMQSS LLNSTLEDKNLSEIPKFKLLLKQLVTMEVIQWTSLWDSYRDEFENEKNMLGGSLADKA AEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLTVQEAEKHLSEMVVSKALVAKIDR PMGIVCFQVAKDSNEILNSWSVNLEKLLDLVEKSCHQIHKEFGQVELCF" CDS complement(join(31272818..31273036,31273201..31273278, 31273365..31273518,31273627..31273739,31273811..31273910, 31275404..31275600,31275709..31275765,31275853..31275957, 31276047..31276154,31278245..31278442,31278538..31278540)) /locus_tag="TCM_025213" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="26S proteasome regulatory subunit (RPN5), putative isoform 1" /protein_id="EOY09837.1" /db_xref="Phytozome:POPTR_0007s07080.1" /db_xref="TAIR:AT5G09900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FGF7" /translation="MDGNKGNLEAAIEQLLNVEKQMRFAGDVAETKKAVTDILQLCFE AKDWKSLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDETPDLETRIELIKTLNSVSAG KIYVEIERARLIKKLAKIKEEQCLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRL CLDRQDYVRAQILSRKISPRVFDADTSKEKKKPKEGDNVVEEPPADIPSLLELKRIYY ELMIRYYFHNNDYLEICRCYKAIYEIPSIRENPSQWIPVLRKICWYLILAPHDPMQSS LLNSTLEDKNLSEIPKFKLLLKQLVTMEVIQWTSLWDSYRDEFENEKNMLGGSLADKA AEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLTVQEAEKHLSEMVVSKALVAKIDR PMGIVCFQVAKDSNEILNSWSVNLEKLLDLVEKSCHQIHKETMVHKAALKV" CDS complement(join(31272818..31273036,31273201..31273278, 31273365..31273518,31273627..31273739,31273811..31273910, 31275404..31275600,31275709..31275765,31275853..31275957, 31276047..31276154,31278245..31278442,31278538..31278540)) /locus_tag="TCM_025213" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="26S proteasome regulatory subunit (RPN5), putative isoform 1" /protein_id="EOY09840.1" /db_xref="Phytozome:POPTR_0007s07080.1" /db_xref="TAIR:AT5G09900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FGF7" /translation="MDGNKGNLEAAIEQLLNVEKQMRFAGDVAETKKAVTDILQLCFE AKDWKSLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDETPDLETRIELIKTLNSVSAG KIYVEIERARLIKKLAKIKEEQCLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRL CLDRQDYVRAQILSRKISPRVFDADTSKEKKKPKEGDNVVEEPPADIPSLLELKRIYY ELMIRYYFHNNDYLEICRCYKAIYEIPSIRENPSQWIPVLRKICWYLILAPHDPMQSS LLNSTLEDKNLSEIPKFKLLLKQLVTMEVIQWTSLWDSYRDEFENEKNMLGGSLADKA AEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLTVQEAEKHLSEMVVSKALVAKIDR PMGIVCFQVAKDSNEILNSWSVNLEKLLDLVEKSCHQIHKETMVHKAALKV" CDS complement(join(31272818..31273039,31273201..31273278, 31273365..31273518,31273627..31273739,31273811..31273910, 31275404..31275600,31275709..31275765,31275853..31275957, 31276047..31276154,31278245..31278442,31278538..31278540)) /locus_tag="TCM_025213" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="26S proteasome regulatory subunit (RPN5), putative isoform 2" /protein_id="EOY09838.1" /db_xref="Phytozome:POPTR_0007s07080.1" /db_xref="TAIR:AT5G09900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FGF7" /translation="MDGNKGNLEAAIEQLLNVEKQMRFAGDVAETKKAVTDILQLCFE AKDWKSLNEQIVNLSKKRGQLKQAVTAMVQQAMQYIDETPDLETRIELIKTLNSVSAG KIYVEIERARLIKKLAKIKEEQCLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRL CLDRQDYVRAQILSRKISPRVFDADTSKEKKKPKEGDNVVEEPPADIPSLLELKRIYY ELMIRYYFHNNDYLEICRCYKAIYEIPSIRENPSQWIPVLRKICWYLILAPHDPMQSS LLNSTLEDKNLSEIPKFKLLLKQLVTMEVIQWTSLWDSYRDEFENEKNMLGGSLADKA AEDLRQRIIEHNILVVSKYYSRITLKRLAELLCLTVQQEAEKHLSEMVVSKALVAKID RPMGIVCFQVAKDSNEILNSWSVNLEKLLDLVEKSCHQIHKETMVHKAALKV" mobile_element 31278870..31278988 /note="source:scaffold_2_CACTA_0243 87 211" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31282160..31282263 /note="source:CACAO_M_E85761_F230_scaffold_11 923 1034" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 31282961..31283101 /note="source:scaffold_1_CACTA_0008 14041 14179" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31283388..31283525) /note="source:CACAO_PIF_E119_scaffold_3 1748 1883" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(31283420..31283561) /note="source:scaffold_7_CACTA_0779 12690 12821" /mobile_element_type="transposon:TIR/CACTA" gene 31286035..31305135 /locus_tag="TCM_025214" /note="dbxref CacaoGD:Thecc1EG025214" mRNA join(31286035..31286369,31286734..31286975, 31287100..31287424,31288381..31288632,31304772..31305135) /locus_tag="TCM_025214" /product="Senescence-related gene 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g29390.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025218t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021331001" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc442t7" CDS join(31286115..31286369,31286734..31286975, 31287100..31287424,31288381..31288632,31304772..31304786) /locus_tag="TCM_025214" /note="paralog of Thecc1EG025218t1" /codon_start=1 /product="Senescence-related gene 1" /protein_id="EOY09841.1" /db_xref="Phytozome:GSVIVT01021331001" /db_xref="TAIR:AT1G17020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GJ32" /translation="MALSNPKDFSSSPSMVSVQELVKGPTITIPQQYVRLDQEPLSLS FTAPSPPIPTIDMARLVSGDDDNDLELEKLHSTCKDWGIFQLVNHGVSCSLLDKLKHE VEEFYRLPLEEKMKYKIRAGELEGYGCRIREGGKQDWVDSLNIITNPVHRRKPHLFPE LPSSLRNTLESYLSELQKIAAKLLGSMAKALGIDVKEMMEFSDDGMQAVRLAYYPPCP KPELVMGLFPHSDITLMNILHQVNGVDGLQIKKDGLWFPLNIKPDAFVVNVGDILQIF SNGVYHSIEHKVSTNAEKERISITFSINPKNGADVGPAPSLINPDNPPLFRKVGVEQY FKDYFSRKPSGKVYLDHMRIQNGQDNSA" mobile_element 31287483..31288291 /note="source:CACAO_MITE53_scaffold_3 1 831" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(31288932..31289326) /note="source:INTACT897F_F376_scaffold_6-int 1451 1843" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(31289644..31289702) /note="source:scaffold_9_CACTA_0942 4944 5011" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31289703..31289838) /note="source:CACAO_PIF_E119_scaffold_3 1748 1883" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(31289839..31289874) /note="source:scaffold_9_CACTA_0942 4900 4943" /mobile_element_type="transposon:TIR/CACTA" gene 31290596..31296529 /locus_tag="TCM_025215" /note="dbxref CacaoGD:Thecc1EG025215" mRNA join(31290596..31290965,31293406..31294817, 31296013..31296363,31296507..31296529) /locus_tag="TCM_025215" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044282t1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.36 coverage" mobile_element complement(31292390..31292961) /note="source:scaffold_1_CACTA_0009 13256 13828" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31292660..31292928 /note="source:CACAO_M_E33977_F20_scaffold_4 5395 5676" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(31292929..31293333) /note="source:scaffold_10_CACTA_0141 1938 2362" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31293334..31298965 /note="source:CACAO_M_E33977_F20_scaffold_4 5677 11595" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(31293485..31294817,31296013..31296362) /locus_tag="TCM_025215" /note="paralog of Thecc1EG044282t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09842.1" /translation="MRGVRSDLSFVGLMKLIEDVVGVNSEIDEIELHALISTPGELSR PIIKDDEDVALILLEQRNVLAVYVSIKGRQTNVMSHGEVGQHGNQLNQNEIYNVSHIP QHSVRNPQQWQWRYAQEFVQPSTQTTFTEQLAAQFRSGCASNQFLASLEQMQRSGETV ECVMPLSNENTIIEDNNVRLEGDTATLEYNTAFDEGNEDLFANGEYRFNHTSDDGLEQ SQDDSSDDDCLYDSDIPICNNVEGETEPVGGVDVGDVQCDDPIYNNPIAGENGILSFD TLLDDNDQKRENARISRMWVIAGAERFSFQTITTKESTCAEDRLYKGRIFSSKVELKR ALNMLVIKEKFAIRVKGSCKTRYEVGCKDKACKFSVRATKLPDRGEYWKVQTFHKVHT CTVDGLQGRFLTTSVKMIGELMSYKIRANGVALRPKDIICEMRVQWGLECLYGSIRPI GHPSEWDIPPYVKQIVVLPPPWLGQAGRPRKRRISSAGEGSRARRCSQCKRYGHNRHN CPYPFSVPSTNLAPSPSQSVTPRLLRPKAGSSCRQTVTQAITVQYEGQCLKM" gene complement(31297730..31301901) /locus_tag="TCM_025216" /note="dbxref CacaoGD:Thecc1EG025216" mRNA complement(join(31297730..31298405,31298489..31298673, 31298763..31298970,31299045..31299195,31299280..31299351, 31299592..31299663,31299743..31299814,31299943..31300127, 31300351..31300396,31300504..31301241,31301830..31301901)) /locus_tag="TCM_025216" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014994t1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.35 coverage" CDS complement(join(31297993..31298405,31298489..31298673, 31298763..31298970,31299045..31299195,31299280..31299351, 31299592..31299663,31299743..31299814,31299943..31300127, 31300351..31300396,31300504..31300890)) /locus_tag="TCM_025216" /note="paralog of Thecc1EG014994t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09843.1" /translation="MPDVFRRPYEVAADGIHARYWNGQDNVKLQALLDTFRGGNFQLP GDATKMVLVLIANNILFGQDYRRWVTPWLLSLVEDIVAWNVFPWGHYVWKLTLDYLLK GFEVPDLSVTKETRLRYNIYGFAWVIQAMKAISTLRKIVAPSDEALREYFVDLDVPLS EGNKYVPVGHMEDRSDWGLGARQKRRSLKEKRASGGMKRMRTAAALLDHGPTVSEPPT SPPQMQSGNDLSFTEARTGPQALIGPAQPQTANESAYAKVTTGPKASIDPAPPQTTNE PPLTQSRTVNDGAVITRQLRRIMRKHEKDMLELKASIQSLNVAKQTIKDRIVATVEIQ SSSPESSAVHHGAVEISNLTERARLKMASKYMANPFVDPLVTRRDVRDKIVEDYEAFK KKEFERRNVGILGDQGADFFITLEDPNEEMTSEHIDACLSLLCKRMTRSKSKLYTTCA CMVDTIFFINTIRMLHIEFPIEDARAKMQIPDELQGYVEGERPTYAKKWEDADFILAP CNVGGHWVVGKIDLMRWTIKVVDSTRTSDAKDNGVRAGQMTPLTTMMSFICHQAGYFN NIRRKRQDLDIHLPKAKVHRQNDSVSCVCS" mobile_element 31298959..31303006 /note="source:CACAO_M_E33977_F20_scaffold_4 12461 16541" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 31303068..31305140 /locus_tag="TCM_025218" /note="dbxref CacaoGD:Thecc1EG025218" mRNA join(31303068..31303330,31303696..31303937, 31304059..31304383,31304520..31305140) /locus_tag="TCM_025218" /product="Senescence-related gene 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma13g29390.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025214t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021331001" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7631t1" CDS join(31303076..31303330,31303696..31303937, 31304059..31304383,31304520..31304786) /locus_tag="TCM_025218" /note="paralog of Thecc1EG025214t1" /codon_start=1 /product="Senescence-related gene 1" /protein_id="EOY09844.1" /db_xref="Phytozome:GSVIVT01021331001" /db_xref="TAIR:AT1G17020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GJ32" /translation="MALSNPKDFSSSPLMVSVQELVKGPTITIPQQYVRLDQEPLSLS FTAPSPPIPTIDMARLVSGDDDNDLELEKLHSTCKDWGIFQLVNHGVSSSLLDKLKHE VEEFYWLPLEEKMKYKMRAGDWEGYGCRSREGGKLDWVDSLNIITNPVDRRRPHLFPE LPSSLRNTLESYLLELQKIAAKLLGSMAKALGIDVEEMMEFFDDGIQAVRLAYYPPCP KPELVMGLFPHSDITLINILHQVNGVDGLQIKKDGLWFPLNINPDAFIVNVGDILQIF SNGVYHSIEHKVSTNAEKERISITFSINPKNGADVGPAPSLINPDNPPLFRKVGVEQY FKDYSSRKPSGKAYLDHMRIQNGQDNSA" gene 31306117..31311319 /locus_tag="TCM_025219" /note="dbxref CacaoGD:Thecc1EG025219" mRNA join(31306117..31306444,31306567..31306703, 31306779..31306857,31307226..31307280,31307622..31307944, 31308214..31308296,31308399..31308474,31308562..31308623, 31308938..31309033,31309153..31309314,31310951..31311319) /locus_tag="TCM_025219" /product="GroES-like zinc-binding dehydrogenase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g29070.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001445t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s06560.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g07475t00001" mRNA join(31306156..31306444,31306567..31306703, 31307243..31307280,31307622..31307944,31308214..31308296, 31308399..31308474,31308562..31308623,31308938..31309033, 31309153..31309314,31310951..31311314) /locus_tag="TCM_025219" /product="GroES-like zinc-binding dehydrogenase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g29070.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001445t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s06560.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:PASA:2:TSA:puevd3b024398t1a2; inference alignment:Newbler:10:TSA:cgbaP2_g07475t00001" mRNA join(31306174..31306444,31306567..31306703, 31307243..31307280,31307622..31307944,31308214..31308296, 31308399..31308474,31308562..31308623,31308938..31309033, 31309135..31309182) /locus_tag="TCM_025219" /product="GroES-like zinc-binding dehydrogenase family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g29070.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001445t1" /inference="similar to AA sequence:Phytozome:POPTR_0004s06560.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1247t3; inference alignment:Newbler:10:TSA:cgbaP2_g07475t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1244t3" CDS join(31306402..31306444,31306567..31306703, 31306779..31306857,31307226..31307280,31307622..31307944, 31308214..31308296,31308399..31308474,31308562..31308623, 31308938..31309033,31309153..31309314,31310951..31311067) /locus_tag="TCM_025219" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG001445t1" /codon_start=1 /product="GroES-like zinc-binding dehydrogenase family protein isoform 1" /protein_id="EOY09845.1" /db_xref="Phytozome:POPTR_0004s06560.1" /db_xref="TAIR:AT5G24760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LEB2" /translation="MSSSTKQPDVITCKAMVAWEAGKELVMEEVQVSPPQPHEIRVKV VCTSLCRTDITAWETQFNSDCVPFLSILPNFPLHKIGVPLLENHADLQAIFPRIFGHE ASGIVESVGKGVTEFVEGDHVLTVFTGECKTCIHCASGKSNMCQVLGLERRGVMHSDQ RTRFSVKGEPVYHYCAVSSFSEYTVVHSGCAVKVSPHAPLEKICLLSCGVAAGLGAAW NVADISKGSTVVIFGLGTVGLAVAQGAKLRGASQIIGVETNPEKYEKAKAFGVTEFLN PKDCKEPIQQVIKRLSGGGTDYSFECIGDTGTVATALQSCCDGWGLTVTLGVPKMKPE IAAHYSAFLSGKTLKGSLFGGWKPKSDLPSLVEKYMNKEIQIDEFITHNLPFEDINKA FSLMREGKCLRCVIHMPK" CDS join(31306402..31306444,31306567..31306703, 31307243..31307280,31307622..31307944,31308214..31308296, 31308399..31308474,31308562..31308623,31308938..31309033, 31309153..31309314,31310951..31311067) /locus_tag="TCM_025219" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG001445t1" /codon_start=1 /product="GroES-like zinc-binding dehydrogenase family protein isoform 2" /protein_id="EOY09846.1" /db_xref="Phytozome:POPTR_0004s06560.1" /db_xref="TAIR:AT5G24760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LEB2" /translation="MSSSTKQPDVITCKAMVAWEAGKELVMEEVQVSPPQPHEIRVKV VCTSLCRTDITAWETQAIFPRIFGHEASGIVESVGKGVTEFVEGDHVLTVFTGECKTC IHCASGKSNMCQVLGLERRGVMHSDQRTRFSVKGEPVYHYCAVSSFSEYTVVHSGCAV KVSPHAPLEKICLLSCGVAAGLGAAWNVADISKGSTVVIFGLGTVGLAVAQGAKLRGA SQIIGVETNPEKYEKAKAFGVTEFLNPKDCKEPIQQVIKRLSGGGTDYSFECIGDTGT VATALQSCCDGWGLTVTLGVPKMKPEIAAHYSAFLSGKTLKGSLFGGWKPKSDLPSLV EKYMNKEIQIDEFITHNLPFEDINKAFSLMREGKCLRCVIHMPK" CDS join(31306402..31306444,31306567..31306703, 31307243..31307280,31307622..31307944,31308214..31308296, 31308399..31308474,31308562..31308623,31308938..31309033, 31309135..31309152) /locus_tag="TCM_025219" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG001445t1" /codon_start=1 /product="GroES-like zinc-binding dehydrogenase family protein isoform 3" /protein_id="EOY09847.1" /db_xref="Phytozome:POPTR_0004s06560.1" /db_xref="TAIR:AT5G24760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S0S3" /translation="MSSSTKQPDVITCKAMVAWEAGKELVMEEVQVSPPQPHEIRVKV VCTSLCRTDITAWETQAIFPRIFGHEASGIVESVGKGVTEFVEGDHVLTVFTGECKTC IHCASGKSNMCQVLGLERRGVMHSDQRTRFSVKGEPVYHYCAVSSFSEYTVVHSGCAV KVSPHAPLEKICLLSCGVAAGLGAAWNVADISKGSTVVIFGLGTVGLAVAQGAKLRGA SQIIGVETNPEKYEKAKAFGVTEFLNPKDCKEPIQQVIKRLSGGGTDYSFECIGDTGT VATALQSCCDSSVVS" gene 31312976..31314837 /locus_tag="TCM_025221" /note="dbxref CacaoGD:Thecc1EG025221" mRNA 31312976..31314837 /locus_tag="TCM_025221" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025212t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.61 coverage" CDS 31313175..31314218 /locus_tag="TCM_025221" /note="paralog of Thecc1EG025212t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09848.1" /translation="MYSLGVVFDPSDRDIVSHYLPMLISGESMSSLGDLQYVIGFADI YSTKPSVFFDVNNGNGLPFLKSNQRFIFTHRQRISKKNANGKRPRRILECHHYDETLG VGDSGGYWRSSTAEKPILDEQQQEIGFVRTLNFFEFKDEKKSRKDATKTRWLMHEYRL PGDTFQEWVICKIKDTSGSPHDEYSDSIWEKELFGKLLLPHSDENHHHQDEYQSQIQS STVFNNGNLPSYEVDQLLDDDPFKEVDQLLEINDDNQIQTQSSTVFNNGNLRSFEVDQ LLYAHEKEISKDDDPIKDVDQLWEINDDNQIVDYSFKEMEQLLGMNDNDPIADVDKAL ATMNSYYLPDLLD" gene 31317091..31318081 /locus_tag="TCM_025222" /note="dbxref CacaoGD:Thecc1EG025222" mRNA 31317091..31318081 /locus_tag="TCM_025222" /product="Late embryogenesis abundant hydroxyproline-rich glycoprotein family" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024247001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036392t1" /inference="similar to AA sequence:Phytozome:POPTR_0017s03470.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2551t1" CDS 31317152..31317898 /locus_tag="TCM_025222" /note="paralog of Thecc1EG036392t1" /codon_start=1 /product="Late embryogenesis abundant hydroxyproline-rich glycoprotein family" /protein_id="EOY09849.1" /db_xref="Phytozome:POPTR_0017s03470.1" /db_xref="TAIR:AT5G36970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HE80" /translation="MTEQQKIHPVVDVEAPAPTVPLVPPGSATSEKGSPVQHRLPQRT IPVIHTRPPKKRSCCCKCICWTISLIVLLLIILGATVGILYLAFRPKLPKYSIDSLRI SDLRLNFDMTLYAKFDVKITANNPNKKIGIYYEQGGRLSVWYTNSKLCQGSLPKFYQG HQNITKLDVVLTGQTEAGSTLMSALQEQQQTGQIPLDLKVDAPVAIKLGKLKMRKVRI LGDCKLVVDSLSANNIISIKASNCKFRLTL" gene complement(31318719..31324461) /locus_tag="TCM_025223" /note="dbxref CacaoGD:Thecc1EG025223" mRNA complement(join(31318719..31319563,31320875..31321041, 31322520..31323345,31323914..31324141)) /locus_tag="TCM_025223" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s06580.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s06580.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02116t00001" CDS complement(join(31319356..31319563,31320875..31321041, 31322520..31323345,31323914..31324104)) /locus_tag="TCM_025223" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY09850.1" /db_xref="Phytozome:POPTR_0004s06580.1" /db_xref="TAIR:AT1G73380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HE81" /translation="MNYQGNREEEVEAAKKRCRVLIEKIDSLGITITQPCKHTLSKLA HSELSFLSRFPNPTSSQPLSVNIGHLEAIVHILQQPFITAVSRVCKPLPLPFSNTNKN DSSSSSNPIHVHIVCTLNKNPVWIIVSDRNPNYISWYPSKKTKGFKSRIQQVLDAAQS TNTLRPFSIVLFFSNGLTNFIHQKLQDEFGASKLALEFSDFDFCEEFEGEWINVIPRS YKEACILEIKVDRVVDDVASSEHRTKDPLVNVLPPECQGGNAYLNLGLGNSFSALVSQ MKKVGSTKVEDFPGEDDFVNFDTTALIALVSGISNGCAEELLNKPEVELRHRFKGNYE FVIAQAMSEIQNPIHGGLSAAIAGKRGIICESVLSEFKELVLMCGGANEKSRADQLLK CLLIVRDSPSERLMGLPTTRKLALKNKIVFGTGDYWHAPTLTANMAFVRAVAQTAMSL FTIEHRPRALTGN" mRNA complement(join(31319532..31319563,31322520..31323345, 31323914..31324461)) /locus_tag="TCM_025223" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0004s06580.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s06580.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc557t4_C2; inference alignment:Newbler:10:TSA:cgbaB_g02116t00001" CDS complement(join(31319549..31319563,31322520..31323345, 31323914..31324104)) /locus_tag="TCM_025223" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY09851.1" /db_xref="Phytozome:POPTR_0004s06580.1" /db_xref="TAIR:AT1G73380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HE81" /translation="MNYQGNREEEVEAAKKRCRVLIEKIDSLGITITQPCKHTLSKLA HSELSFLSRFPNPTSSQPLSVNIGHLEAIVHILQQPFITAVSRVCKPLPLPFSNTNKN DSSSSSNPIHVHIVCTLNKNPVWIIVSDRNPNYISWYPSKKTKGFKSRIQQVLDAAQS TNTLRPFSIVLFFSNGLTNFIHQKLQDEFGASKLALEFSDFDFCEEFEGEWINVIPRS YKEACILEIKVDRVVDDVASSEHRTKDPLVNVLPPECQGGNAYLNLGLGNSFSALVSQ MKKVGSTKVEDFPGEDDFVNFDTTALIALVSGISNGCAEELLNKPEVELRHRFKGNYE FVIAQDCAR" mobile_element complement(31324795..31324860) /note="source:scaffold_10_CACTA_0130 1132 1196" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31324802..31324862) /note="source:CACAO_M_E1149_F297_scaffold_1 1046 1106" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(31325018..31332191) /locus_tag="TCM_025224" /note="dbxref CacaoGD:Thecc1EG025224" mRNA complement(join(31325018..31325539,31325860..31326050, 31326730..31327518,31327584..31327649,31329141..31329260, 31329391..31329486,31329609..31329977,31330352..31330474, 31330569..31330673,31331474..31331611,31331693..31332191)) /locus_tag="TCM_025224" /product="ARC6-like protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s05630.1" /inference="similar to AA sequence:Phytozome:GSVIVT01029333001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7642t2" CDS complement(join(31325455..31325539,31325860..31326050, 31326730..31327518,31327584..31327649,31329141..31329260, 31329391..31329486,31329609..31329977,31330352..31330474, 31330569..31330673,31331474..31331611,31331693..31332100)) /locus_tag="TCM_025224" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="ARC6-like protein isoform 1" /protein_id="EOY09852.1" /db_xref="Phytozome:GSVIVT01029333001" /db_xref="TAIR:AT3G19180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N354" /translation="MALRNVTLAPIIPSSSCSCCFFFTRSSNQSEILGFETLIKSNGC PFPTVRKRWRSSAIDTRVGIVENAPVSSSSSFSSSRTATVAGTAAVDIPVSCYQLIGV SSQAEKDEIVKSVMNLKSAEVDDGYTMDVLVSRQEVLMDVRDKLLFETEYAGNVKEKI PPKSSLRIPWRWLPAALCLLQEVGEEKLVLELGRAAVQRPDAKPYIHDLLLSMALAEC SIAKIGFQKNKVFEGFEALARAQCLLRSTKSLRQMTLLSQIEESLEELAPACTLELLG LPQSPENSDRRQGAIAALRELVRQGLDVETSCQVQDWSSFLSQALSRLLASEVIDILP WDDLAIARKNKKSIESQNQRVVIDFTCFYMALIAHIALGFSSRQTDLINKAKTICECL ITSEGNDLKLEEAFCLFLLGQGSEAEVIEKLQLLESSSNPAPKNSITGKEIRGSSSTN SSLEMWLKDAVLSLFPDTRDCSPSLANYFGGERKAPGIRKNKGAPQTMANLSHRSLST ALASERRDFEDSLCRMKSSLHITSTVKQLAPTDLQGSLVPGDNSSGSNVTAASVQLKR NFGVNQNKAWESWLFQRNVTEGLTFVAVLGCIVFTSFKLSGMRLSGVRHMSIWAPSKP RMNISSITRKGDSSLDYDVGSAHIKGSGIGGRITKLLELAKVQFRNPSDARNLQSSCL PASLSTSITAVDRKQMSVEEAEALVRQWQAIKAEALGPSHQVNSLSEALDESMLIQWK ALADMARARCCYWRFVLLQLTILRADILLDRNAREMAEIEALLEEAAELVDESEPKNP NYYSTYKIRYILKRQDDGLWKFCGGDIETPS" mRNA complement(join(<31325929..31326050,31326730..31327518, 31327584..31327649,31329141..31329260,31329391..31329486, 31329609..31329977,31330352..31330517,31330569..31330594)) /locus_tag="TCM_025224" /product="ARC6-like protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s05630.1" /inference="similar to AA sequence:Phytozome:POPTR_0015s05630.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1342t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7642t2" CDS complement(join(<31325931..31326050,31326730..31327518, 31327584..31327649,31329141..31329260,31329391..31329486, 31329609..31329977,31330352..31330510)) /locus_tag="TCM_025224" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="ARC6-like protein isoform 2" /protein_id="EOY09853.1" /db_xref="Phytozome:POPTR_0015s05630.1" /db_xref="TAIR:AT3G19180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N354" /translation="MPTFLIIGAFLKCSIAKIGFQKNKVFEGFEALARAQCLLRSTKS LRQMTLLSQIEESLEELAPACTLELLGLPQSPENSDRRQGAIAALRELVRQGLDVETS CQVQDWSSFLSQALSRLLASEVIDILPWDDLAIARKNKKSIESQNQRVVIDFTCFYMA LIAHIALGFSSRQTDLINKAKTICECLITSEGNDLKLEEAFCLFLLGQGSEAEVIEKL QLLESSSNPAPKNSITGKEIRGSSSTNSSLEMWLKDAVLSLFPDTRDCSPSLANYFGG ERKAPGIRKNKGAPQTMANLSHRSLSTALASERRDFEDSLCRMKSSLHITSTVKQLAP TDLQGSLVPGDNSSGSNVTAASVQLKRNFGVNQNKAWESWLFQRNVTEGLTFVAVLGC IVFTSFKLSGMRLSGVRHMSIWAPSKPRMNISSITRKGDSSLDYDVGSAHIKGSGIGG RITKLLELAKVQFRNPSDARNLQSSCLPASLSTSITAVDRKQMSVEEAEALVRQWQAI KAEALGPSHQVNSLSEALDESMLIQWKALADMARARCCYWRFVLLQLTILRADILLDR NAREMAE" mobile_element 31332405..31332498 /note="source:INTACT1798F_F56_scaffold_10-int 15056 15141" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 31333529..31343723 /locus_tag="TCM_025225" /note="dbxref CacaoGD:Thecc1EG025225" mRNA join(31333529..31334076,31334178..31334288, 31335268..31335354,31335475..31335686,31336329..31336366, 31336506..31336516,31336612..31336833,31338624..31338663, 31338759..31338808,31338987..31339065,31339234..31339341, 31339845..31339947,31340215..31340270,31341997..31342031, 31343053..31343091,31343258..31343723) /locus_tag="TCM_025225" /product="Root hair initiation protein root hairless 1, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma16g33850.1" /inference="similar to AA sequence:ricco:29922.m000108" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07705t00001" mRNA join(31333612..31334076,31334178..31334288, 31335268..31335354,31335475..31335686,31336329..31336444, 31336616..31336833,31338624..31338663,31338759..31338808, 31338987..31339035,31341997..31342031,31343053..31343091, 31343258..31343692) /locus_tag="TCM_025225" /product="Root hair initiation protein root hairless 1, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma16g33850.1" /inference="similar to AA sequence:ricco:29922.m000108" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:PASA:2:TSA:puevd3b024403t1a2; inference alignment:Newbler:10:TSA:cgbaB_g07705t00001" mRNA join(31333620..31334076,31334178..31334288, 31335268..31335354,31335475..31335686,31336329..31336444, 31336616..31336833,31338622..31338663,31338759..31338808, 31338987..31339013,31341997..31342031,31343053..31343091, 31343258..31343685) /locus_tag="TCM_025225" /product="Root hair initiation protein root hairless 1, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma16g33850.1" /inference="similar to AA sequence:ricco:29922.m000108" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7652t4; inference alignment:Newbler:10:TSA:cgbaB_g07705t00001" mRNA join(31333620..31334076,31334178..31334288, 31335268..31335354,31335475..31335686,31336329..31336444, 31336616..31336833,31338627..31338663,31338759..31338808, 31338987..31339035,31341997..31342031,31343053..31343091, 31343258..31343685) /locus_tag="TCM_025225" /product="Root hair initiation protein root hairless 1, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma16g33850.1" /inference="similar to AA sequence:ricco:29922.m000108" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7652t1; inference alignment:Newbler:10:TSA:cgbaB_g07705t00001" CDS join(31333759..31334076,31334178..31334288, 31335268..31335354,31335475..31335686,31336329..31336444, 31336616..31336833,31338624..31338663,31338759..31338808, 31338987..31339035,31341997..31342031,31343053..31343091, 31343258..31343293) /locus_tag="TCM_025225" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29922.m000108" /codon_start=1 /product="Root hair initiation protein root hairless 1, putative isoform 2" /protein_id="EOY09855.1" /db_xref="TAIR:AT1G48380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SVP0" /translation="MVRTSSSKKPPIAETPEATERKRLKKLALKNNLLSDTPATPKSY VPLSPSKLVMKHHGKDILRKSQRKNRFLFSFPGLLAPISGGKIGELKNLGSKNPILYL DFPQGQMKLFGTIVYPKNRYLTLLFSRGGKNVMCEDYFDNMIVFSDAWWIGKKDENPE EARLDFPKELCQGQQMEYDFKGGAGVESVNKQDTPRTEIKQVEIESLDNESGDALSDD DNDLTAKMEVTPTRHSARNAGKRFKFAEASSEDDPVRSDAEPSDGEEKKVGKKLHLTE NDTIGKTISSASLVLKSDAAEDSQIPEQIQTSLTSVSKSRKISKSTVTVTKSKENSKA NRGSLVQPTISTLFKKVGEKKGPRGSDKSSSTKVLGKKLQSNNYKRKIDQTEGSSKKG KVNEEKTTGTGIKRKKKESEDEEDIEEISSTSEDANGSDEDWTA" CDS join(31333759..31334076,31334178..31334288, 31335268..31335354,31335475..31335686,31336329..31336444, 31336616..31336833,31338627..31338663,31338759..31338808, 31338987..31339035,31341997..31342031,31343053..31343091, 31343258..31343293) /locus_tag="TCM_025225" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29922.m000108" /codon_start=1 /product="Root hair initiation protein root hairless 1, putative isoform 3" /protein_id="EOY09856.1" /db_xref="TAIR:AT1G48380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SVP0" /translation="MVRTSSSKKPPIAETPEATERKRLKKLALKNNLLSDTPATPKSY VPLSPSKLVMKHHGKDILRKSQRKNRFLFSFPGLLAPISGGKIGELKNLGSKNPILYL DFPQGQMKLFGTIVYPKNRYLTLLFSRGGKNVMCEDYFDNMIVFSDAWWIGKKDENPE EARLDFPKELCQGQQMEYDFKGGAGVESVNKQDTPRTEIKQVEIESLDNESGDALSDD DNDLTAKMEVTPTRHSARNAGKRFKFAEASSEDDPVRSDAEPSDGEEKKVGKKLHLTE NDTIGKTISSASLVLKSDAAEDSQIPEQIQTSLTSVSKSRKISKSTVTVTKSKENSKA NRGSLVQPTISTLFKKVGEKGPRGSDKSSSTKVLGKKLQSNNYKRKIDQTEGSSKKGK VNEEKTTGTGIKRKKKESEDEEDIEEISSTSEDANGSDEDWTA" CDS join(31333759..31334076,31334178..31334288, 31335268..31335354,31335475..31335686,31336329..31336366, 31336506..31336516,31336612..31336833,31338624..31338663, 31338759..31338808,31338987..31339065,31339234..31339341, 31339845..31339947,31340215..31340270,31341997..31342031, 31343053..31343091,31343258..31343293) /locus_tag="TCM_025225" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29922.m000108" /codon_start=1 /product="Root hair initiation protein root hairless 1, putative isoform 1" /protein_id="EOY09854.1" /db_xref="TAIR:AT1G48380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SVP0" /translation="MVRTSSSKKPPIAETPEATERKRLKKLALKNNLLSDTPATPKSY VPLSPSKLVMKHHGKDILRKSQRKNRFLFSFPGLLAPISGGKIGELKNLGSKNPILYL DFPQGQMKLFGTIVYPKNRYLTLLFSRGGKNVMCEDYFDNMIVFSDAWWIGKKDENPE EARLDFPKELCQGQQMEYDFKGGAGVESVNKQDTPRTEIKQVEIESLDNESGDALSDD DNDLTAKMEVTPTRHSARNAGKRFKFAEASSEDDPVRTLLQLQTISSASLVLKSDAAE DSQIPEQIQTSLTSVSKSRKISKSTVTVTKSKENSKANRGSLVQPTISTLFKKVGEKK GPRGSDKSSSTKVLGKKLQSNNYKRKIDQTEGSSKKGKVNEEKTTGKIVSLSILQSGN GSLAYKVSNGPGSLIDARIDAFGPFFLVVCDLTGSRVDLVLQWIIGSLLRGHGQIHSP KFLGPTIRGCWDCGHAAENDTSSCGLCIGTGIKRKKKESEDEEDIEEISSTSEDANGS DEDWTA" CDS join(31333759..31334076,31334178..31334288, 31335268..31335354,31335475..31335686,31336329..31336444, 31336616..31336833,31338622..31338663,31338759..31338808, 31338987..31339013,31341997..31342031,31343053..31343057) /locus_tag="TCM_025225" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29922.m000108" /codon_start=1 /product="Root hair initiation protein root hairless 1, putative isoform 4" /protein_id="EOY09857.1" /db_xref="TAIR:AT1G48380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SVP0" /translation="MVRTSSSKKPPIAETPEATERKRLKKLALKNNLLSDTPATPKSY VPLSPSKLVMKHHGKDILRKSQRKNRFLFSFPGLLAPISGGKIGELKNLGSKNPILYL DFPQGQMKLFGTIVYPKNRYLTLLFSRGGKNVMCEDYFDNMIVFSDAWWIGKKDENPE EARLDFPKELCQGQQMEYDFKGGAGVESVNKQDTPRTEIKQVEIESLDNESGDALSDD DNDLTAKMEVTPTRHSARNAGKRFKFAEASSEDDPVRSDAEPSDGEEKKVGKKLHLTE NDTIGKTISSASLVLKSDAAEDSQIPEQIQTSLTSVSKSRKISKSTVTVTKSKENSKA NRGSLVQPTISTLFKKVGEKRRDLEVQINLHPQKFLARSCSPIITKGRLIRLRDLAKR ERDRNQKKEERIRG" misc_feature join(31342154..31343091,31343258..31343380) /locus_tag="TCM_025225" /note="Gene fragment of Thecc1EG025225t1; dbxref gnl|CacaoGD|Thecc1EG025225t1; quality class is mediumpartial-partof is thecc1eg025225t1, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1466t10; dbxref CacaoGD:Thecc1EG025226t1" gene complement(31343808..31349496) /locus_tag="TCM_025227" /note="dbxref CacaoGD:Thecc1EG025227" mRNA complement(join(31343808..31345397,31345504..31345693, 31346169..31346303,31346395..31346492,31346712..31346866, 31348595..31349496)) /locus_tag="TCM_025227" /product="YELLOW STRIPE like 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s00810.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007749t1" /inference="similar to AA sequence:Phytozome:POPTR_0017s03330.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01810t00001" CDS complement(join(31344300..31345397,31345504..31345693, 31346169..31346303,31346395..31346492,31346712..31346866, 31348595..31348988)) /locus_tag="TCM_025227" /note="paralog of Thecc1EG007749t1" /codon_start=1 /product="YELLOW STRIPE like 5" /protein_id="EOY09858.1" /db_xref="Phytozome:POPTR_0017s03330.1" /db_xref="TAIR:AT3G17650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6R3K4" /translation="MDNNGRGDDRVENGFNPEEDDRKKEMKEAEMSVEQIFESQEVPS WRKQLTMRAFAVSFVLSILFSFIVMKLNLTTGIIPSLNVSAGLLGFFFVKTWTKMLEK SGLLKQPFTRQENTVIQTCVVASSGIAFSGGFGSYLFGMSERIAQQSGDTRGVKNPSL GWIIGFLFVVSFLGLFSVVPLRKIMVIDFRLTYPSGTATAHLINSFHTPQGAKLAKKQ VKTLGKFFSFSFLWGFFQWFYTAEETCGFFNFPTLGLKAYENKFFFDFSATYVGVGMI CPYIINISVLLGGILSWGVMWPLIETRKGDWYPADVSSSNMHGLQGYKVFIAIAMILG DGLYNFFKVLSRTLIGLFHQIRGRQALPIANQPSPDTSKKLSYDDQRRTQLFLKDQIP TWFSVAGYVTIAVISTIVLPHIFHELKWYYILVLYAFAPTLAFCNAYGCGLTDWSLAS TYGKLAIFTIGAWAGSHGGVLAGLAACGVMMNIVSTASDLMQDFKTGYLTLASPRSMF ISQVIGTAMGCIVSPCVFWLFYKAFDDLGLPNSQYPAPFAVVYRNMSLLGVQGFSALP KNCLVLCYVFFGAAILINLVKDRVGKKWGSYIPLPMAMAIPFYIGSYFAIDMCVGSLI LFVWEKINKAKADAFGPAVASGLICGDGIWTLPSSILALAGVKPPICMKFLSRATNAR VDKFLGS" gene complement(31357163..31365301) /locus_tag="TCM_025229" /note="dbxref CacaoGD:Thecc1EG025229" mRNA complement(join(31357163..31357630,31360031..31360476, 31361206..31361472,31361597..31361838,31362107..31362217, 31363460..31363545,31363675..31364013,31364277..31364554, 31364720..31364984,31365102..31365301)) /locus_tag="TCM_025229" /product="Lipoxygenase, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040491t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s05320.1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(31357482..31357630,31360031..31360476, 31361206..31361472,31361597..31361838,31362107..31362217, 31363460..31363545,31363675..31364013,31364277..31364554, 31364720..31364984,31365102..31365249)) /locus_tag="TCM_025229" /note="paralog of Thecc1EG040491t1" /codon_start=1 /product="Lipoxygenase, putative" /protein_id="EOY09859.1" /db_xref="Phytozome:POPTR_0001s05320.1" /db_xref="TAIR:AT3G45140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IJA0" /translation="MMMLRDKAVVTVEQIIGCKGLWDFLHSPTKLILLELVSAELDPS KEKVEETGLEKDTIKAYAHGVIEGGNVKYEAEFKGGKILGRLVRLLLRMSTTKKYFWR KYSLLVSQRVRLLSSVILGFTQSTTILGKESSSLAREITDLLRSICLEQSYLPSQTPS GLRALRKEELKVLRGNGKGERKWFERVYDYDVCNDIGDPDCDPSKTRPVLGGKGLPHL RRCRTGPPPCPRDHESETKSNNVYVPRDECFSEVKQRKLGEETASSLLHALNPSLWRR IIGFPNLAAIDQLFDEGMESPPRGYISVEQFLIGKLHGIFITVWRFIGYHFGYNLCLW PFKAPQPMQRDRFFWLRDEEFVRQTLAGINPYAIKLVTEWPLQSKLDPDTYGPPESTI TKEMIECEIKGYMTLDEKVRELKSTTLYGSPTLFLLNPNETLRPLAIELSRPPLDGKP QFWKKAYEPCGHSTGAWLWRLAKTHVLAHDSLYHQLVTHCLRTHGATEPYIIATDQQL SVLHPIYKLLHPHFRFTMKINARARAHLINADGIIESSFSLANYSMEFSSVAYDLEWR FDHQAFPADLISRGMAMEDPTAPHGLRLKSRITLSLMTGFFPGTSLKNWSLTMSTTTT QMQVSWSHEELQAWWTEIREVGHGDKKDESWWAVLRTPKDLIQTVTTIAWVSSGHHTA VNFGQYEYAGYFPNRPTIARRNMPNEDPSEEDWKSFIEKPETILLCRVKFEPKISGLS SPDASLAHRPRGEFTSRVKGMRKYICRALNINRTSK" gene complement(31365974..31378771) /locus_tag="TCM_025230" /note="dbxref CacaoGD:Thecc1EG025230" mRNA complement(join(31365974..31367153,31368638..31368812, 31368952..31369056,31369696..31372707,31375344..31375387, 31375497..31375619,31378528..31378771)) /locus_tag="TCM_025230" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s03370.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s06730.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1321t7" mRNA complement(join(31366241..31367153,31368638..31368812, 31369696..31372707,31375344..31375387,31375497..31375619, 31378107..31378136)) /locus_tag="TCM_025230" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s03370.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s06730.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1321t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1321t7; inference alignment:Newbler:10:TSA:cgbaB_g05865t00001" CDS complement(join(31366947..31367153,31368638..31368812, 31368952..31369056,31369696..31372707,31375344..31375387, 31375497..31375619,31378528..31378530)) /locus_tag="TCM_025230" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY09860.1" /db_xref="Phytozome:POPTR_0004s06730.1" /translation="MIQQKMPCALQQTHQDNQKVSEVGKANCSKNSLQLNDSRRSEDS GISSFNLRNIGQRCAILTLPTLGSDGQWRIVAIPLQYLDHNNLFRSGTHLNMNSMHLV SSPLINSVKVDGRKTKKGPQPEVTYSAKQCRARSFSGSNMQHQFRTRTVANKMTKLDE VANNSSCQSSVTCNDSSVFKPKGSTATNPSAMFVDCSEEDKSKKRNSRKKAKKKGKHR KKHLCDVSSTASEVCSEYTRGSSASEICGNNDMNQGMVVSCATSPSNGLLNIADFADS SNGVITSFESPNICISDIDQVDITESIVPSQVQKLPSEYLINDSEIGKEDQQFSRSRV GLERRYPSQVGSLDCIHQEDFSDLHDSLVLDSVSVGSSSEESMSASHIVKPFDNSHEN SQSEAPGSNTKKGSFYHQNSLCSISETHDYTQGPKHGLDFSSCDVQMIASGKRGKQFK SVPGSSSTCKLGSIGNLHGGMGTENSHSVWQRVQRHGVEKCNTELKKASPICSGSDVT AKDAPLLKRSSNAANETTLSGTNDKRKLKDKVPRKLKRKVSPASKQEKSSCSRKGSHP NKVNLNAHAKTSSMQKDEMLDVLTALNDQRVIKNVSRSCAQLGFARVETMKSESLNNL QVSPGSMEPCESVCDAASGLNNQCIENQDSLLKKSCVPLDQPNLHEVRAPVYLPHLMV NGVARTEKEFSLAEYGKQSHSSGSVLQKWIPVGIKDPGFTTSVRSASLSTEHSNGPEA EDWTFKNKFEEKVAPCAQNLSSSVDAGTMCSIGKDSGHAISSPENDNHIKNLRNLNAC INENENKHNGANFLIDETKEQNLSALATDLNKISKALNDAYRAQMASEAVQMAIGGPI AEFERLLHFSSPVICHSYSSVACQSCLQDQVPSGLLCRHETPNVPLGCLWQWYEKHGS YGLEIRAEDYENPKRLGVDRFEFRAYFVPFLSAVQLFRNSKSHSTPNNTTIASPGVSE GYDTGSTSRDFTNVSHLPILSVLVPQPRTSEPSSHLPVNDVVRSEPSLVSSKNGLSAK SVDMAWSDCLEPVFEYFESEQPQQRRALYEKIQELVRDDVSSRCKMYGDPVHLNSINI HDLHPRSWYSVAWYPIYRIPDGNFRAAFLTYHSLGHLVRRSSKFDYPSLDACIVSPVV GLQSYNAQGECWFQPRHSTVNDFSEIHGLSPSGILKERLRTLKETASLMARAVVNKGD QTSVNRHPDYEFFLSRQR" CDS complement(join(31366947..31367153,31368638..31368812, 31369696..31372707,31375344..31375387,31375497..31375607)) /locus_tag="TCM_025230" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY09861.1" /db_xref="Phytozome:POPTR_0004s06730.1" /translation="MPCALQQTHQDNQKVSEVGKANCSKNSLQLNDSRRSEDSGISSF NLRNIGQRCAILTLPTLGSDGQWRIVAIPLQYLDHNNLFRSGTHLNMNSMHLVSSPLI NSVKVDGRKTKKGPQPEVTYSAKQCRARSFSGSNMQHQFRTRTVANKMTKLDEVANNS SCQSSVTCNDSSVFKPKGSTATNPSAMFVDCSEEDKSKKRNSRKKAKKKGKHRKKHLC DVSSTASEVCSEYTRGSSASEICGNNDMNQGMVVSCATSPSNGLLNIADFADSSNGVI TSFESPNICISDIDQVDITESIVPSQVQKLPSEYLINDSEIGKEDQQFSRSRVGLERR YPSQVGSLDCIHQEDFSDLHDSLVLDSVSVGSSSEESMSASHIVKPFDNSHENSQSEA PGSNTKKGSFYHQNSLCSISETHDYTQGPKHGLDFSSCDVQMIASGKRGKQFKSVPGS SSTCKLGSIGNLHGGMGTENSHSVWQRVQRHGVEKCNTELKKASPICSGSDVTAKDAP LLKRSSNAANETTLSGTNDKRKLKDKVPRKLKRKVSPASKQEKSSCSRKGSHPNKVNL NAHAKTSSMQKDEMLDVLTALNDQRVIKNVSRSCAQLGFARVETMKSESLNNLQVSPG SMEPCESVCDAASGLNNQCIENQDSLLKKSCVPLDQPNLHEVRAPVYLPHLMVNGVAR TEKEFSLAEYGKQSHSSGSVLQKWIPVGIKDPGFTTSVRSASLSTEHSNGPEAEDWTF KNKFEEKVAPCAQNLSSSVDAGTMCSIGKDSGHAISSPENDNHIKNLRNLNACINENE NKHNGANFLIDETKEQNLSALATDLNKISKALNDAYRAQMASEAVQMAIGGPIAEFER LLHFSSPVICHSYSSVACQSCLQDQVPSGLLCRHETPNVPLGCLWQWYEKHGSYGLEI RAEDYENPKRLGVDRFEFRAYFVPFLSAVQLFRNSKSHSTPNNTTIASPGVSEGYDTG STSRDFTNVSHLPILSVLVPQPRTSEPSSHLPVNDVVRSEPSLVSSKNGLSAKSVDMA WSDCLEPVFEYFESEQPQQRRALYEKYSVAWYPIYRIPDGNFRAAFLTYHSLGHLVRR SSKFDYPSLDACIVSPVVGLQSYNAQGECWFQPRHSTVNDFSEIHGLSPSGILKERLR TLKETASLMARAVVNKGDQTSVNRHPDYEFFLSRQR" gene complement(31379258..31380461) /locus_tag="TCM_025233" /note="dbxref CacaoGD:Thecc1EG025233" mRNA complement(31379258..31380461) /locus_tag="TCM_025233" /product="Kunitz family trypsin and protease inhibitor protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012922001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025234t1" /inference="similar to AA sequence:Phytozome:GSVIVT01012922001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g08092t00001" CDS complement(31379362..31379949) /locus_tag="TCM_025233" /note="paralog of Thecc1EG025234t1" /codon_start=1 /product="Kunitz family trypsin and protease inhibitor protein" /protein_id="EOY09862.1" /db_xref="Phytozome:GSVIVT01012922001" /db_xref="TAIR:AT1G17860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HW71" /translation="MKTAVFLALSLLLCANAAPDPVLDISGKKLRTGTDYYILPVFRG RGGGLTLASTGNESCPLDVVQEQLEVSDGLPVTFSPVNIKKGVVRVSTDQNIKFSAAT ICVQPTLWKLDSFDDSTRQWFVTTGGVEGNPGRETIDNWFKIEKYEDDYKLVFCPTVC DFCKVMCRDVGVFIDGGVRRLALSDVPFKVMFKRA" gene complement(31381875..31383024) /locus_tag="TCM_025234" /note="dbxref CacaoGD:Thecc1EG025234" mRNA complement(31381875..31383024) /locus_tag="TCM_025234" /product="Kunitz family trypsin and protease inhibitor protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012922001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025233t1" /inference="similar to AA sequence:Phytozome:GSVIVT01012922001" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7669t1" CDS complement(31382400..31382996) /locus_tag="TCM_025234" /note="paralog of Thecc1EG025233t1" /codon_start=1 /product="Kunitz family trypsin and protease inhibitor protein, putative" /protein_id="EOY09863.1" /db_xref="Phytozome:GSVIVT01012922001" /db_xref="TAIR:AT1G17860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HW71" /translation="MKTALFLALSFLLWGSTGATDGLDPVLDISGEELRTGTDYYILP VIRGGGGGLTLASTGNETCPLDVVQEQLEVSNGLPLTFSPVNITKGVVRVSTDLNIKF SAATICVQSTVWKLDNDEATQKMVVTTGGVEGNPGIETLSNWFKIERYEDDYKLVFCP GVCDFCRPVCGDLGVFIDAGIRRLALSDVPLKVMFKRA" gene complement(31383316..31387411) /locus_tag="TCM_025235" /note="dbxref CacaoGD:Thecc1EG025235" mRNA complement(join(31383316..31384429,31385146..31385239, 31385541..31385680,31385745..31387411)) /locus_tag="TCM_025235" /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012938001" /inference="similar to AA sequence:Phytozome:GSVIVT01012938001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:PASA:2:TSA:puevd3b024410t1a2; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc654t3" mRNA complement(join(31383316..31384429,31385146..31385264, 31385541..31385680,31385745..31387411)) /locus_tag="TCM_025235" /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012938001" /inference="similar to AA sequence:Phytozome:GSVIVT01012938001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc654t3" CDS complement(join(31384307..31384429,31385146..31385264, 31385541..31385680,31385745..31387312)) /locus_tag="TCM_025235" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 1" /protein_id="EOY09864.1" /db_xref="Phytozome:GSVIVT01012938001" /db_xref="TAIR:AT2G29760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9H8" /translation="MKHKKLLLSLLEKCPNLKNLKKIHAHATTLGLLQNHNQALSCKI LTTYANLNNPDDANRTFNQIQRPDIVSWTCLIKLFVQYEDPFKSVLAFSQLIRNGLRP DTYSVVAALSACGKNKDLDNGKLIHGVVSKYELGFENPIVGNALIDMYSRNGDILASE LVFEWMFVKDIASWNSLLNGFLLCNDLEASRRVFDKMPSRNAVSWTAMISGYVKGKEP LVGLKLFKEMKSEGKVDPTMVTIVAVLAGCADSGGLYFGVSVHGYVKKVNLNEKNVVL SNALMDMYSKCGYLDVTAKIFNDMVVRDVFSWTTMITGYAFHGKGKQALELFFDMLES RVAPNEVTFLSALSACSHEGLLVQGQRLFRIMVQRYGFKPKIEHYGCVLDLLGRAGLL EEAKMFIEEMPILPDAVVWRSLLCACLVHGKLDLAEVAGKKVIELEPDDDGAYLLLWH MYSSTNRPEGAVKIRKLMRNQKVRKRPGCSWLEVNGIVREFLAEYRPHYAGSDSCCIL EGISEQSKLNEEFLWGRGGEEGFAKDFHKQTCSLSVRSPYIFCFCSEELAQRIMRKTC PLPVYCLSISRRRTITGQFKAKANRWQRQLNFQAIDCSKKKEKGSPAAQEEKADMASL GKPFFEHRISQGASLILLISARLLL" mRNA complement(join(31384998..31385245,31385541..31385680, 31385745..31387411)) /locus_tag="TCM_025235" /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01012938001" /inference="similar to AA sequence:Phytozome:GSVIVT01012938001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:PASA:2:TSA:puevd3b024410t1a3; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc654t3" CDS complement(join(31385184..31385239,31385541..31385680, 31385745..31387312)) /locus_tag="TCM_025235" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 2" /protein_id="EOY09865.1" /db_xref="Phytozome:GSVIVT01012938001" /db_xref="TAIR:AT2G29760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9H8" /translation="MKHKKLLLSLLEKCPNLKNLKKIHAHATTLGLLQNHNQALSCKI LTTYANLNNPDDANRTFNQIQRPDIVSWTCLIKLFVQYEDPFKSVLAFSQLIRNGLRP DTYSVVAALSACGKNKDLDNGKLIHGVVSKYELGFENPIVGNALIDMYSRNGDILASE LVFEWMFVKDIASWNSLLNGFLLCNDLEASRRVFDKMPSRNAVSWTAMISGYVKGKEP LVGLKLFKEMKSEGKVDPTMVTIVAVLAGCADSGGLYFGVSVHGYVKKVNLNEKNVVL SNALMDMYSKCGYLDVTAKIFNDMVVRDVFSWTTMITGYAFHGKGKQALELFFDMLES RVAPNEVTFLSALSACSHEGLLVQGQRLFRIMVQRYGFKPKIEHYGCVLDLLGRAGLL EEAKMFIEEMPILPDAVVWRSLLCACLVHGKLDLAEVAGKKVIELEPDDDGAYLLLWH MYSSTNRPEGAVKIRKLMRNQKVRKRPGCSWLEVNGIVREFLAEYRPHYAGSDSCCIL EGISEQSKLNEEFLWGRGGEEGFAKDFHKQTCSLSVRSPYIFCFCSEELAQRIMRKTC PLPDEQSLVNSRLRLIDGRDN" CDS complement(join(31385184..31385245,31385541..31385680, 31385745..31387312)) /locus_tag="TCM_025235" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 3" /protein_id="EOY09866.1" /db_xref="Phytozome:GSVIVT01012938001" /db_xref="TAIR:AT2G29760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9H8" /translation="MKHKKLLLSLLEKCPNLKNLKKIHAHATTLGLLQNHNQALSCKI LTTYANLNNPDDANRTFNQIQRPDIVSWTCLIKLFVQYEDPFKSVLAFSQLIRNGLRP DTYSVVAALSACGKNKDLDNGKLIHGVVSKYELGFENPIVGNALIDMYSRNGDILASE LVFEWMFVKDIASWNSLLNGFLLCNDLEASRRVFDKMPSRNAVSWTAMISGYVKGKEP LVGLKLFKEMKSEGKVDPTMVTIVAVLAGCADSGGLYFGVSVHGYVKKVNLNEKNVVL SNALMDMYSKCGYLDVTAKIFNDMVVRDVFSWTTMITGYAFHGKGKQALELFFDMLES RVAPNEVTFLSALSACSHEGLLVQGQRLFRIMVQRYGFKPKIEHYGCVLDLLGRAGLL EEAKMFIEEMPILPDAVVWRSLLCACLVHGKLDLAEVAGKKVIELEPDDDGAYLLLWH MYSSTNRPEGAVKIRKLMRNQKVRKRPGCSWLEVNGIVREFLAEYRPHYAGSDSCCIL EGISEQSKLNEEFLWGRGGEEGFAKDFHKQTCSLSVRSPYIFCFCSEELAQRIMRKTC PLPAADEQSLVNSRLRLIDGRDN" gene complement(31387998..31392174) /locus_tag="TCM_025236" /note="dbxref CacaoGD:Thecc1EG025236" mRNA complement(join(31387998..31388468,31388697..31388772, 31388871..31388941)) /locus_tag="TCM_025236" /product="Heavy metal transport/detoxification superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s02570.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029705t1" /inference="similar to AA sequence:frave:gene11165" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14363t1" mRNA complement(join(31388016..31388468,31392150..31392174)) /locus_tag="TCM_025236" /product="Heavy metal transport/detoxification superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s02570.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s02570.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc121t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc121t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14363t1" CDS complement(join(31388146..31388468,31388697..31388772, 31388871..31388918)) /locus_tag="TCM_025236" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene11165; paralog of Thecc1EG029705t1" /codon_start=1 /product="Heavy metal transport/detoxification superfamily protein isoform 1" /protein_id="EOY09867.1" /db_xref="TAIR:AT3G56891.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HDG5" /translation="MFGWLYGKTRFSNAMSIVELLVHMDCEGCEKRIRRAISKIDGVD SLEIDMDKQKVTVTGYIDERKVLKVVRRTGRKAELWPFPYDSEYYPYASRYLDESTYA SSYNYYRHGYNESVHGYFPDQAYSTVPDQTVHLFSDDNVHAYCNVM" CDS complement(31388146..31388445) /locus_tag="TCM_025236" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Heavy metal transport/detoxification superfamily protein isoform 2" /protein_id="EOY09868.1" /db_xref="Phytozome:POPTR_0006s02570.1" /translation="MDKQKVTVTGYIDERKVLKVVRRTGRKAELWPFPYDSEYYPYAS RYLDESTYASSYNYYRHGYNESVHGYFPDQAYSTVPDQTVHLFSDDNVHAYCNVM" gene complement(31390747..31393177) /locus_tag="TCM_025237" /note="dbxref CacaoGD:Thecc1EG025237" mRNA complement(join(31390747..31390973,31392150..31392381, 31392960..31393063,31393154..31393177)) /locus_tag="TCM_025237" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:frave:gene10886.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012595t1" /inference="similar to AA sequence:Phytozome:GSVIVT01025772001" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g11010t00001" CDS complement(31392154..31392372) /locus_tag="TCM_025237" /note="paralog of Thecc1EG012595t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09869.1" /db_xref="Phytozome:GSVIVT01025772001" /translation="MEEAAKTARESLDQAFHISNILDTGLDRHTLSVLIALCDLGLNP EALAAVVKELQREPCPLPPTPAAPSSFP" gene complement(31393351..31398404) /locus_tag="TCM_025238" /note="dbxref CacaoGD:Thecc1EG025238" mRNA complement(join(31393351..31396652,31397988..31398404)) /locus_tag="TCM_025238" /product="Receptor like protein 53, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0011s07920.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031917t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s39970.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7683t1" CDS complement(31393628..31396417) /locus_tag="TCM_025238" /note="paralog of Thecc1EG031917t1" /codon_start=1 /product="Receptor like protein 53, putative" /protein_id="EOY09870.1" /db_xref="Phytozome:POPTR_0001s39970.1" /db_xref="TAIR:AT5G27060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GVZ7" /translation="MRSLLWNYQFLCLLLLFYIYAEATTSSSFTSSTPGKICSHNEAA ALLQFKQSFLINSSASFTCDADYGIRSYPKTDSWEESTDCCSWDGVTCDSETGQVIGL DLSCSRLYGTIPSNSSIFLLQHLKRLDLSFNDFRNSKISAGFGRFGDLTHLNLSNSLF SGQVPSDISRLSKLISLDLSSFKPLIPDDSQLKLETTALERLVQNLGEVQEFYLDRIN MSSVDPSYLMKFSSSLTSLSLRNCELRGKIPESIFQFPNLKFIDLGINQELAIYLPKS NWTNPLEFLNLESTEVLEGLPDSIGNLRSLQFLNLIGCNLQGSIPSTIGNLSEVIALL LSFNNFSGQIPPSVVNLPQLIDLDMSHNQLGGPIPYHASGLSKLVSLYFSDNFLIEAI PSWVLNLPSLQNLYLGNNRFTGDIQAFQSKSLTTIDFGNNRLHGHIPSSIFKLANLAL LDLSFNNFSGIVELDMFSELKNLEWLDLSHNNLSLSKNIKVNYTLPKLSSLFLASCNL SEFPNFLRGNKVLIGLDLSENRIHGQIPKWMWDVGKNTLSYLSLSQNFLNGSVEFPWL NILSLQLQFNMLQGVLPEFMKGCQLKALNFNGNRFEGDLPQSLVNCRSLEVLDLGNNN MKGTFPYWLETLPELQVLVLSSNKFHGFVPKSKARAPFPKLRVLDLSNNGFVGPLPAW YIENLKAMAYLDEGYSSVRYMQGSRSYNYSLTLTIKGFTMQLVRILTIFTSIDLSNNN FEGVIPEVLGKLSALKGLNLSSNKIGGDIPPSLGNLTQLEWLDLSSNELVGKIPEELV DLIFLSFIDLSDNQLVGSIPQGKQFNTFENSSYEGNFGLCGRPLSKSCNETPKPPSPT LPLEDDSKSGIRFGWKVALMGYGCGFIFGAAAGYLVFQTGKPKWFINLVGVKQHQKVK KSKQKKATRRAERRN" mobile_element complement(31399328..31399350) /note="source:CACAO_M_S_E119615_F3_scaffold_9 7155 7175" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 31399351..31402795 /note="source:CACAO_M_E44110_F323_scaffold_5 1 3445" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 31402975..31404003 /note="source:CACAO_M_E44150_F74_scaffold_5 1506 2533" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 31404104..31406154 /note="source:CACAO_M_E44150_F74_scaffold_5 2548 4598" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 31406431..31409763 /note="source:CACAO_Again_on_S_E228_scaffold_7 1 3330" /mobile_element_type="transposon:TIR/hAT" mobile_element 31410734..31411073 /note="source:scaffold_10_CACTA_0130 6243 6574" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31411090..31412290 /note="source:scaffold_10_CACTA_0130 8380 9606" /mobile_element_type="transposon:TIR/CACTA" gene 31428419..31429353 /locus_tag="TCM_025241" /note="dbxref CacaoGD:Thecc1EG025241" mRNA 31428419..31429353 /locus_tag="TCM_025241" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s01875.1.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035385t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s01875.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11328t00001" CDS 31428606..31429217 /locus_tag="TCM_025241" /note="paralog of Thecc1EG035385t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09871.1" /db_xref="Phytozome:POPTR_0012s01875.1" /translation="MLARFKELTIMWNNIKMASNCERVWKTAMFAITWTIWIGRNEVV FHNKVWDKELIWKLIKLRVAMWVKVRWQDTASSITDIYRFPAIGLNQQRDENIRPLTV WEKSGANAIKFNVDGAANGSPGEAGIGGLLRNEKGEVLIKFSKAIGRGDLNLAEYLSI KEAFILFSNSIWAHNHSFVIKSDSRNAIRWINDPSKTPWRLRK" mobile_element 31431106..31431298 /note="source:CACAO_on_SS_E42_scaffold_2 17188 17349" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(31431378..31431586) /note="source:scaffold_5_CACTA_0610 5144 5340" /mobile_element_type="transposon:TIR/CACTA" gene 31431859..31443883 /locus_tag="TCM_025242" /note="dbxref CacaoGD:Thecc1EG025242" mRNA join(31431859..31432490,31432962..31433051, 31433311..31433373,31434813..31434899,31434979..31435131, 31435259..31435416,31435658..31435892,31436043..31436153, 31436816..31437874,31437974..31438237,31440248..31440433, 31440529..31441683,31441945..31442295,31442855..31443883) /locus_tag="TCM_025242" /product="Aquarius" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g00260.1" /inference="similar to AA sequence:Phytozome:POPTR_0003s20020.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc171t4" CDS join(31432071..31432490,31432962..31433051, 31433311..31433373,31434813..31434899,31434979..31435131, 31435259..31435416,31435658..31435892,31436043..31436153, 31436816..31437874,31437974..31438237,31440248..31440433, 31440529..31441683,31441945..31442295,31442855..31443142) /locus_tag="TCM_025242" /codon_start=1 /product="Aquarius" /protein_id="EOY09872.1" /db_xref="Phytozome:POPTR_0003s20020.1" /db_xref="TAIR:AT2G38770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E5GCK6" /translation="MTKVHGTGVYDFKRHHVAEYPVEFTDQLDSKSGPGSSLPSSITL SEIQRDQLTRIATANWLKSGGSKPNKPFDPQLVKEIYDTELTVKSEGKSQRKTVPLQR VMILEVSQYLENYLWPNFDAETASYEHVMSMILMVNEKFRENVAAWSCFYDQKDVFTG FLGRVLRLKEGRDLTIAEKTNYLVFMINAFQSLEDEIVRETVLRLASLRSWHSLSYGR FQMELCLNPDLIKKWKRMIKKEADDAKKQGVHVDPLSSLEVNFLRNLIEEFLEVLDHK VFSRKHSVNEDDELDASSFEQVDDASVLYCERFMEFLIDLLSQLPTRRYLRPLVADVA VVAKCHLSALYRRDKGKLFAQLVDLLQFYENFEINDHVGTQLTDDEVLQSHYDRLQSL QLLAFKKIPKLQELALANIGATHKRADLSKKLSVLSPEELKDLVCCKLKLVSKNDPWS DRVDFLIEVMVSFFEKQQSQKEAINALPLYPNEQIMWDESVVPSINYSGEGCLALPKL NLQFLTLHDYLLRNFNLFRLESTYEIREDIQEAVPHLLAYINNEGETAFRGWSRMAVP IKEFKITEVKQPNIGEVKPASVTAEVTYSISSYRSQIRSEWDALKEHDVLFLLSISPS FKPLSAEEDAKASVPEKLGLQYVRGCEIIEIRDEEGTLMNDFSGRTKREEWKPPKGEL RTVTIALDTAQYHMDVTDIAEKGAEDVYGTFNVLMRRKPKENNFKAILESIRDLMNEY CIVPDWLHKIFLGYGHPSAAQWTNMPDLLETVDFKDTFLSADHLKESFPHYQVYFVDS DGRENLDPRPPFRIKLPQLLKSDTHALSGNGISDTGSVNDANTVHACIEKEKLIVEAY IPPDPGPYPQDQPKQNSVRFTPTQIGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVL YHNCPSQRTLIITHSNQALNDLFEKIMERDVPARYLLRLGQGEQELATDLDFSRQGRV NAMLVRRLELLSEVERLARSLQLPEDVGYTCETAGYFWLLHVYSRWEQFLAACAGNED KPAFVQDRFPFKEFFSNTPQAVFTGQSFEKDMRAAKGCFRHLKTMFQELEECRAFELL KSTADRANYLMTKQAKIVAMTCTHAALKRKDFLQLGFKYDNLLMEESAQILEIETFIP MLLQRQEDGYARLKRCILIGDHHQLPPVVKNMAFQKYSHMDQSLFTRFVRLGIPYIEL NAQGRARPSIAQLYNWRYRDLGDLPYVKEEPIFHRANAGFSYDYQLVDVPDYHGRGET APSPWFYQNEGEAEYVVSVYIYMRLLGYPANKISILTTYNGQKLLIRDVINRRCLPYD FIGPPSKVTTVDKFQGQQNDFILLSLVRTRFVGHLRDVRRLVVAMSRARLGLYVFCRR SLFEQCYELQPTFHLLLQRPDHLALNLNESTSFTERHVEDIGHPYLVGGVEEMANVVY GKINQLQQARAMYQYMAYSGQYMGTSEEQNSEHNSISPNQAMDIDTSVAENGRIDDNV HENNGEEAKDVDGLANGPDGVLPPENLSNAEKDAEVCANDENRVP" mobile_element 31444676..31445955 /note="source:scaffold_2_CACTA_0256 3833 5118" /mobile_element_type="transposon:TIR/CACTA" gene complement(31444684..31446252) /locus_tag="TCM_025243" /note="dbxref CacaoGD:Thecc1EG025243" mRNA complement(join(31444684..31445325,31445436..31446252)) /locus_tag="TCM_025243" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020418t1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS complement(join(31445057..31445325,31445436..31445820)) /locus_tag="TCM_025243" /note="paralog of Thecc1EG020418t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09873.1" /translation="MPNDSATLFNSWNAVAIKEGEISIWKMAFYTVVWSLWLFRNEIV FNGKHWDQDQLFELIKLQVASWAKAKWPFLQNSELDIYRTPKAEVHIKKQKQDRLEMR WKEPEEGKMKFNVDGAANGCPGEAGIASRWRSTHIMVVESDSKNAVQWINEPKKAPWR MRKWIFHIEMLKRKMVQWEVQHVSREANQQADNLAKSGIGRVQDLLNVLGEATNIND" gene complement(31446401..31448624) /locus_tag="TCM_025244" /note="dbxref CacaoGD:Thecc1EG025244" mRNA complement(join(31446401..31447422,31448123..31448377, 31448525..31448624)) /locus_tag="TCM_025244" /product="Uncharacterized protein" /inference="similar to AA sequence:Phytozome:POPTR_0005s04650.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.61 coverage" CDS complement(join(31447238..31447422,31448123..31448377, 31448525..31448597)) /locus_tag="TCM_025244" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09874.1" /db_xref="Phytozome:POPTR_0005s04650.1" /translation="MCRLGRLSTAKELFRKMCASGQVPVRHIKVAMELFHGLPAKGLK PDVYTYLLMISGLCKEGLPNEAYQLFRIMEDNDCLPDSCCYNVMIRGLLRNSYTSKAM QLLKEMVGKLWEAEKVYDIIKMTIAWRVKSKCPNDNGSIMDIVNAPSFAREFISRKPN NKNVTWETLT" mobile_element 31450994..31451578 /note="source:CACAO_M_S_E17777_F2_scaffold_3 11338 11913" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(31453744..31454835) /locus_tag="TCM_025245" /note="dbxref CacaoGD:Thecc1EG025245" mRNA complement(join(31453744..31454235,31454447..31454532, 31454756..31454835)) /locus_tag="TCM_025245" /product="Glutathione S-transferase TAU 25" /inference="alignment:exonerate- protein:2:Phytozome:Glyma11g31330.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032364t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s15090.2" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc3234t1" CDS complement(join(31453894..31454235,31454447..31454532, 31454756..31454762)) /locus_tag="TCM_025245" /note="paralog of Thecc1EG032364t1" /codon_start=1 /product="Glutathione S-transferase TAU 25" /protein_id="EOY09875.1" /db_xref="Phytozome:POPTR_0019s15090.2" /db_xref="TAIR:AT1G17180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IA73" /translation="MEVWNHKSPLLPSDPYQRSQALFWGDYLDKKMYSCGKRIWVGKE DQEEAKEELMQILKTMEGELGDKLYFGGDSIGYVDVALVPFTSWFYTYETCGNFSIEA DCPKLIAWAKRCKESESVSKALPDPLEIYGYLLQLKKRLGLN" gene 31456839..31459509 /locus_tag="TCM_025246" /note="dbxref CacaoGD:Thecc1EG025246" mRNA 31456839..31459509 /locus_tag="TCM_025246" /product="Cysteine/Histidine-rich C1 domain family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s05820.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024834t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05820.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete" CDS 31457288..31459312 /locus_tag="TCM_025246" /note="paralog of Thecc1EG024834t1" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein, putative" /protein_id="EOY09876.1" /db_xref="Phytozome:POPTR_0016s05820.1" /db_xref="TAIR:AT5G22355.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9P591" /translation="MEKEMKLQHFSHIHPLIFTKRQVNEGEDINCSGCEKAVLGPSYN CCKCKFSLHEICAKLPFKINHPFHRNHPLILLSKPPTQYTECLCDFCDKTCNSFVYHC FTCRFDLDIPCALLQPQVTGDFLELERFSHKHQLIFIENHVNQGKEVSCSGCKDMVSG PSYSCSNCEFFLHRKCYMLAPEINHPYHREHSLILLTNLPPSYSSCVCDFCLKTCQGF VYHCPSCKFDLDIECAFLPLCITEPESHRHQFIHLMKALSFICDACGVKGDHHPYLCT VCQVIVHEECRFLPHTIKIIGHRHPVTQFYFLQGSKYSKQHCGICHNEVSSNYGGYGC LGCNFVAHVNCATVNSVSMDATLLKSQGQDENIIFRSDDSSNLITDIIKEINLEGDMV AMVVKHFSHPHKLTLNEKVNDDKLCDCCITPILEPFYSCLECDLFLHKTCLQLPKRKQ HPLHPHPLTLLSNHPNFEGLFFCDACHQSCHGFTYNCDPCNFNLDVRCGSSSNTLKHE AHEHPLIFSKGTECIDCSACGYGNDYLYSCFDCSFALDFNCASLPHTVRHRHHGHPLD LTYQDSADQNYCNICEEEERNPKHWFYCCKTCNFYAHPKCATGQYPYIKLGKTYPYEA HPHRVAFVHKTRSHPPCSRSGNPCKGLALECTKPQCNFIIEWCHVEILHF" gene complement(31459720..31462437) /locus_tag="TCM_025247" /note="dbxref CacaoGD:Thecc1EG025247" mRNA complement(join(31459720..31460801,31461701..31462437)) /locus_tag="TCM_025247" /product="Adipose-regulatory protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g38570.1" /inference="similar to AA sequence:ricco:29929.m004585" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07007t00001" CDS complement(join(31460115..31460801,31461701..31462264)) /locus_tag="TCM_025247" /note="dbxref ricco:29929.m004585" /codon_start=1 /product="Adipose-regulatory protein, putative" /protein_id="EOY09877.1" /db_xref="TAIR:AT5G16460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RM81" /translation="MEEQEQEVEAYSVIPKPADWLTSLISLQADVLYNCFITLASPFS TFLSVASESYHRAEETTACVGTAVQEVPSEITHASIILLKRVALGLLGAAQVCMLLVL VMVLAALVGIGLVQTWLEEPVFVREKLYFDYTEVNPKAVLCFGGSGFDCSSHRKRQMA VPVGHTFHVYLVLLVPESDFNTHIGVFQLTAELLSSNGNVIAKSSQPVMLWFRSLPVR LARTFLMGLPLLLGISSETQKIKIEILRYKEGHPRTEAVRVILAPRAGTSLLPQLYDA QIIMNSQLPWNKQLLRNWKWTLYVWTSLHVYIMFLVILIGCCKPLFFPVITAGFSNRD EGEAGEEESIEPVISGRNDQSEVSDLLSKWYHSRRKHKATFLHKNFSDIAGSSASSMS VTREDTSGVIEEDVGDSESVCLGG" mobile_element complement(31462961..31463063) /note="source:scaffold_3_CACTA_0396 882 982" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31463155..31464089 /note="source:CACAO_MITE39_scaffold_2 26 963" /mobile_element_type="transposon:TIR/MITE" mobile_element 31464161..31464944 /note="source:CACAO_Again_on_S_E16_scaffold_1 2 736" /mobile_element_type="transposon:TIR/hAT" gene 31469611..31478174 /locus_tag="TCM_025248" /note="dbxref CacaoGD:Thecc1EG025248" mRNA join(31469611..31470103,31471468..31471629, 31472706..31473595,31473701..31473859,31474097..31474733, 31475320..31475433) /locus_tag="TCM_025248" /product="WRKY DNA-binding protein 2, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene16807" /inference="similar to AA sequence:frave:gene16807" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc409t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7688t1" mRNA join(31469642..31470103,31471468..31471629, 31472706..31473595,31473701..31473859,31474097..31475400, 31475548..31475623,31477916..31478174) /locus_tag="TCM_025248" /product="WRKY DNA-binding protein 2, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene16807" /inference="similar to AA sequence:frave:gene16807" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7688t1" CDS join(31469789..31470103,31471468..31471629, 31472706..31473595,31473701..31473859,31474097..31474733, 31475320..31475343) /locus_tag="TCM_025248" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene16807" /codon_start=1 /product="WRKY DNA-binding protein 2, putative isoform 2" /protein_id="EOY09879.1" /db_xref="TAIR:AT5G56270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N149" /translation="MDHNVTVFTNRQESVTADDDDDDSKTADYGGGAGGGGGFGKRGG SIAERRAATCGFKAERISTARFRASTSPLASPSARSPYLTIPPGISPTALLDSPIMLP NAQVSPTTGTFPVPFLNHDSQVLNPSNGDRGSNIVSSFTFKPQNLDSQPSFSSLEDQV SSSFNLVQSAEVHCQRLAKLEPPLDFEFPAEFSKKASSMNSAAVSVADVKVLNDIVND NANLGFHPSELASDEMPMPKEPLLGQDVNTHLSEGDQKGINTAMGMARTSEDGYNWRK YGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSLDGQITEIIYKGAHNHPKPLPCRRPS IGSTLSSDEMSEIAEGGGTCVKVEGGLIWRNAQAGSRDIKLGSDWRADGLERTSSTSV VTDLSDPLSTAQGKSFGAFELAETPEFSSTLASHDDDNDDRATQGSISLCDDAANDDE SESKRRKTESCLTEMNATSGALREPRVVVQIESDVDILDDGYRWRKYGQKVVKGNPNP RSYYKCTTPGCPVRKHVERASHNLKCVLTTYDGKHNHEVPAARSSSHVNSSGCNLPPT VPNTQAALALARNTNALKPETPIQDIVPPFDQKPEFKNEYLRPSFLRDFSNEMKLGAA SLASVYQMKFPSIQNTIPYGSFGVNPNCIAAHQSGSLASTVPNFPMSLPLNHPTSANL SLAGFDINNGGKSTGPTHSFLPGQQLKESTTRFLGIKQEVWSLAWI" CDS join(31469789..31470103,31471468..31471629, 31472706..31473595,31473701..31473859,31474097..31474841) /locus_tag="TCM_025248" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene16807" /codon_start=1 /product="WRKY DNA-binding protein 2, putative isoform 1" /protein_id="EOY09878.1" /db_xref="TAIR:AT5G56270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N149" /translation="MDHNVTVFTNRQESVTADDDDDDSKTADYGGGAGGGGGFGKRGG SIAERRAATCGFKAERISTARFRASTSPLASPSARSPYLTIPPGISPTALLDSPIMLP NAQVSPTTGTFPVPFLNHDSQVLNPSNGDRGSNIVSSFTFKPQNLDSQPSFSSLEDQV SSSFNLVQSAEVHCQRLAKLEPPLDFEFPAEFSKKASSMNSAAVSVADVKVLNDIVND NANLGFHPSELASDEMPMPKEPLLGQDVNTHLSEGDQKGINTAMGMARTSEDGYNWRK YGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSLDGQITEIIYKGAHNHPKPLPCRRPS IGSTLSSDEMSEIAEGGGTCVKVEGGLIWRNAQAGSRDIKLGSDWRADGLERTSSTSV VTDLSDPLSTAQGKSFGAFELAETPEFSSTLASHDDDNDDRATQGSISLCDDAANDDE SESKRRKTESCLTEMNATSGALREPRVVVQIESDVDILDDGYRWRKYGQKVVKGNPNP RSYYKCTTPGCPVRKHVERASHNLKCVLTTYDGKHNHEVPAARSSSHVNSSGCNLPPT VPNTQAALALARNTNALKPETPIQDIVPPFDQKPEFKNEYLRPSFLRDFSNEMKLGAA SLASVYQMKFPSIQNTIPYGSFGVNPNCIAAHQSGSLASTVPNFPMSLPLNHPTSANL SLAGFDINNGGKSTGPTHSFLPGQQLKESTTRFLGIKQEVKDDNLYNPCLPIVDHASA SSLSSVFQQANGNFPS" mobile_element 31473033..31473187 /note="source:scaffold_2_CACTA_0282 2763 2917" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31475672..31476564 /note="source:INTACT135F_F90_scaffold_2-int 12905 13742" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 31475694..31476934 /note="source:scaffold_1_CACTA_0008 6608 6971" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31477468..31478026) /note="source:CACAO_M_S_E5285_F300_scaffold_1 17253 17789" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 31478076..31478155 /note="source:scaffold_5_CACTA_0612 13251 13330" /mobile_element_type="transposon:TIR/CACTA" gene 31479133..31479690 /locus_tag="TCM_025249" /note="dbxref CacaoGD:Thecc1EG025249" mRNA 31479133..31479690 /locus_tag="TCM_025249" /product="Zinc finger (C2H2 type) family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s08420.1" /inference="similar to AA sequence:Phytozome:Glyma18g47730.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g11909t00001" CDS 31479265..31479579 /locus_tag="TCM_025249" /codon_start=1 /product="Zinc finger (C2H2 type) family protein" /protein_id="EOY09880.1" /db_xref="Phytozome:Glyma18g47730.1" /db_xref="TAIR:AT3G02790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M8S0" /translation="MTGKAKPKKHTAKEIATKVDAATTNRGGGKAGLADRSGVEKGGH AKYECPHCKTTAPDLKSMQIHHDAKHPKIPFEESKLVNRHAGHVADCSKSRPGVRGSF KK" mobile_element 31483823..31485982 /note="source:scaffold_5_CACTA_0615 181 2253" /mobile_element_type="transposon:TIR/CACTA" gene complement(31486320..31489134) /locus_tag="TCM_025250" /note="dbxref CacaoGD:Thecc1EG025250" mRNA complement(join(31486320..31486985,31487500..31487543, 31487655..31487712,31488275..31488368,31488826..31489007, 31489129..31489134)) /locus_tag="TCM_025250" /product="Tyrosine phosphatase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s08430.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002183t1" /inference="similar to AA sequence:ricco:29929.m004591" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g08640t00001" CDS complement(join(31486728..31486985,31487500..31487543, 31487655..31487712,31488275..31488368,31488826..31488977)) /locus_tag="TCM_025250" /note="dbxref ricco:29929.m004591; paralog of Thecc1EG002183t1" /codon_start=1 /product="Tyrosine phosphatase family protein" /protein_id="EOY09881.1" /db_xref="TAIR:AT3G02800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M8S1" /translation="MGFIIEGDEENDVVLEPPANFSMVEEGIYRSSFPQPCNFAFLET LKLRSIIYLCTEPYPEENLEFLRSHNIRLFQFGIEGKTEPSVATLKNSIRGALKILID VRNHPVLIHCKRGKHRTGSLVGCLRKLQNWCLSSVFEEYQRFAGIKSRTTDLRFIETF DIISLRQCLHSLIYQYQGYGSKKRRLLYSEETVQKPQITSV" gene 31489173..31502090 /locus_tag="TCM_025251" /note="dbxref CacaoGD:Thecc1EG025251" mRNA join(31489173..31489304,31493060..31493620, 31494262..31494316,31495196..31495303,31495658..31496117, 31496256..31496447,31496646..31497185,31501692..31502090) /locus_tag="TCM_025251" /product="Uncharacterized protein" /inference="similar to AA sequence:frave:gene20290" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.19 coverage; weak similarity to Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" CDS join(31493328..31493620,31494262..31494316, 31495196..31495303,31495658..31496117,31496256..31496447, 31496646..31496986) /locus_tag="TCM_025251" /note="dbxref frave:gene20290; weak similarity to Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09882.1" /db_xref="TAIR:AT4G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BCQ9" /translation="MICDKKKNDDGSRNQFPSCIHCGKTNHSKKYCFKAIGFPNWRKF GKRSGKQTNSDQSHSRGNEWDSSIATSMSLRAACAATVDGVGSPIPSLSSAQHRYDSL ILSFIYPKMECKCECLHLPSRKPIRVGRQRNALYYLEPMRGKRALIASDSFNLRVKIL RTDNGFEFTYDDLMTHYFDHGIEHQSSCTDTLQQNGVVERKHRHHLEVPRALRFQAHL LISFWGECVLTAAYLINHMPLIILQNKTPYEVLLRKSPTYDYLRSFGCLCYGHIINKP RDKFAPCAKPSVFVGYPSGQKGYRIYDLEMPNVTELRINESSTSINPTTSTIGPASHN HRLAIDEPMSQAIAHESTPIGSTSFTNSHESFSLATSVDPISSFGQLKLHPLSQFISY SKFSPNHIAFLAAISSIDELKSFFQAVKHAHWREAMVKEIFTLEANHTWTLQLLPPNK RAIDSKWVYKVKYQPDGSIKHYKAQLVAKGYT" mobile_element 31493957..31495184 /note="source:INTACT58_F125_scaffold_5-int 14735 16015" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 31501892..31504155 /locus_tag="TCM_025253" /note="dbxref CacaoGD:Thecc1EG025253" mRNA join(31501892..31502082,31503416..31504155) /locus_tag="TCM_025253" /product="Photosystem I reaction center subunit XI" /inference="alignment:exonerate-protein:2:frave:gene16804" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002614t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019114001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7706t1" CDS join(31501921..31502082,31503416..31503907) /locus_tag="TCM_025253" /note="paralog of Thecc1EG002614t1" /codon_start=1 /product="Photosystem I reaction center subunit XI" /protein_id="EOY09883.1" /db_xref="Phytozome:GSVIVT01019114001" /db_xref="TAIR:AT4G12800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SUI4" /translation="MAAASPMASHLKSSFTSPISRALVSPKVPFASPLRVLPSRRQSS FTIRAVQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRG IEVGLAHGFLLVGPFVKAGPLRSTPVAGGAGSLAAAGLVVILSICLSMYGVASFKEGE PSTAPSLTLTGRKKEPDQLQTAEGWASFTGGFFFGGISGVTWAYFLLYVLNLPYFFK" gene 31504202..31506426 /locus_tag="TCM_025254" /note="dbxref CacaoGD:Thecc1EG025254" mRNA join(31504202..31504320,31505606..31506426) /locus_tag="TCM_025254" /product="RING/U-box superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30147.m014098.3" /inference="similar to AA sequence:ricco:30147.m014098" /note="quality class is strong, express is strong, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc2083t7_C2" CDS join(31504254..31504320,31505606..31506228) /locus_tag="TCM_025254" /note="dbxref ricco:30147.m014098" /codon_start=1 /product="RING/U-box superfamily protein, putative" /protein_id="EOY09884.1" /translation="MIICLLNHTWEKSQSKFNLLRRGNIFDNYCQVWEVDETRVEDEL LESSIFSIDVHASFTYPNQDCDDEEDDLDIECYDSVTIRRTHEVQFDYMNSDPRSAIR DMLVSMHVPVEDFMIAEISKCAGRMSTKDCYKNRKVLRMCVSIDVMVGELPFPIDKPT TTPASKEAIRRLEKVVIENPMACAICLDDLSIGSEAKRMPCSHLFHGRCIVHWLGMSK FCPICRFEMPS" mobile_element 31504344..31504416 /note="source:scaffold_1_CACTA_0005 6281 6353" /mobile_element_type="transposon:TIR/CACTA" gene complement(31506429..31510277) /locus_tag="TCM_025255" /note="dbxref CacaoGD:Thecc1EG025255" mRNA complement(join(31506429..31506956,31507338..31507496, 31507580..31507724,31510186..31510209)) /locus_tag="TCM_025255" /product="ROP-interactive CRIB motif-containing protein 4, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s08440.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046219t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019115001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1988t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1882t6_C2" mRNA complement(join(31506432..31506956,31507338..31507481, 31507580..31507724,31510186..31510277)) /locus_tag="TCM_025255" /product="ROP-interactive CRIB motif-containing protein 4, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s08440.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046219t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019115001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1882t6_C2" CDS complement(join(31506721..31506956,31507338..31507481, 31507580..31507709)) /locus_tag="TCM_025255" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG046219t1" /codon_start=1 /product="ROP-interactive CRIB motif-containing protein 4, putative isoform 1" /protein_id="EOY09885.1" /db_xref="Phytozome:GSVIVT01019115001" /db_xref="TAIR:AT5G16490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N155" /translation="MRDRMERFVILPFSVGCVSESSVAVAVQQPRRSKPADTNPTATK AQREEDEESLSNESMKYSLKFLPLPKPDISTGFHRLCKSFKTFSQLFAYKEDSEKEME IGFPTDVKHVTHIGLDGSASSSPSMGSWENLFSPHELFTFPSVPSGQCELPMEKQAAA ASPLVQAST" CDS complement(join(31506721..31506956,31507338..31507496, 31507580..31507709)) /locus_tag="TCM_025255" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG046219t1" /codon_start=1 /product="ROP-interactive CRIB motif-containing protein 4, putative isoform 2" /protein_id="EOY09886.1" /db_xref="Phytozome:GSVIVT01019115001" /db_xref="TAIR:AT5G16490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RM87" /translation="MRDRMERFVILPFSVGCVSESSVAVAVQQPRRSKPADTNPTATI VLLVEAQREEDEESLSNESMKYSLKFLPLPKPDISTGFHRLCKSFKTFSQLFAYKEDS EKEMEIGFPTDVKHVTHIGLDGSASSSPSMGSWENLFSPHELFTFPSVPSGQCELPME KQAAAASPLVQAST" gene complement(31509330..31512997) /locus_tag="TCM_025256" /note="dbxref CacaoGD:Thecc1EG025256" mRNA complement(join(31509330..31509371,31510186..31512997)) /locus_tag="TCM_025256" /product="Tetratricopeptide-like helical, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g38630.1" /inference="similar to AA sequence:Phytozome:Glyma09g38630.1" /note="transcript variant 2; alternatively spliced; quality class is medium, express is medium, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:PASA:2:TSA:puevd3b024433t1a2; alternateUTRof:Thecc1EG025256t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7718t1" mRNA complement(join(31509575..31509760,31510186..31512677)) /locus_tag="TCM_025256" /product="Tetratricopeptide-like helical, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g38630.1" /inference="similar to AA sequence:Phytozome:Glyma09g38630.1" /note="transcript variant 1; alternatively spliced; quality class is medium, express is medium, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7718t1" CDS complement(31510409..31512667) /locus_tag="TCM_025256" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Tetratricopeptide-like helical, putative isoform 1" /protein_id="EOY09887.1" /db_xref="Phytozome:Glyma09g38630.1" /db_xref="TAIR:AT5G16860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2HW11" /translation="MPTITPLTMQTLPRAAVIKCVPKSPQISCLLKKLPPFNFHQCKF YSRQPLLLSANDSLLHAKAIKNGSFQNLDVASYLLRLYGKSKCLSDARKVFDEMSQRD VRTWTILVSSFARAGSNGIVLELFRDMQNETVKPNQFTLSIVLKCCSSLSELRIGKGV HGWILRNGVVFDVVLGNSLLDFYVKCEDFGSAKWLFELMEERNSVSWNIMIGAHLNIG DVEKAVDMFRRLSSKDVASWNTIIDGLMRNGPKRMALELLYEMVKNGTVLDEVTFSIS LVLVSSFMDIELGKQIHGRVLRLGFHVDGFIRASLIDMYCKCGKMEMALEVFKRMNSD FGRKENSIEEIVSWSSIVSGFVLNGEIEDAFKTFTSMISKEIEVDRFTVTSIVSACAN SGVLELGQQVHALIQKIGHRVDAHLGSSLIDMYSKCGSLDDAQMVFKQTNDKNVVLWT SMISCCALHGQGREAVRLFEFMMSEGIKPNVVTFIGVLTACSHAGLIEEGCRYFRLMK EVYGIKPGVDHYSCMVDLYGRAGQLNETKNFIHENGIDHMSAVWRSFLSSCRLHRDIK MAEWVSEKLLHLEPPDAGTYILLSNIYATKQRWEEAAEVRSLMQSRGVKKHPGQSWIQ IKNQVHTFVMGDRSHPQTDKIYAYLDKLIGRLREIGYSSDTKLVMQDVEEEQGEMLLG FHSEKLATAYGIISMTSQKPIRIMKNLRVCNDCHTFMKYTSQLLDREIIVRDIRRFHH FKRGCCSCGDYW" CDS complement(31510409..31512667) /locus_tag="TCM_025256" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Tetratricopeptide-like helical, putative isoform 1" /protein_id="EOY09888.1" /db_xref="Phytozome:Glyma09g38630.1" /db_xref="TAIR:AT5G16860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2HW11" /translation="MPTITPLTMQTLPRAAVIKCVPKSPQISCLLKKLPPFNFHQCKF YSRQPLLLSANDSLLHAKAIKNGSFQNLDVASYLLRLYGKSKCLSDARKVFDEMSQRD VRTWTILVSSFARAGSNGIVLELFRDMQNETVKPNQFTLSIVLKCCSSLSELRIGKGV HGWILRNGVVFDVVLGNSLLDFYVKCEDFGSAKWLFELMEERNSVSWNIMIGAHLNIG DVEKAVDMFRRLSSKDVASWNTIIDGLMRNGPKRMALELLYEMVKNGTVLDEVTFSIS LVLVSSFMDIELGKQIHGRVLRLGFHVDGFIRASLIDMYCKCGKMEMALEVFKRMNSD FGRKENSIEEIVSWSSIVSGFVLNGEIEDAFKTFTSMISKEIEVDRFTVTSIVSACAN SGVLELGQQVHALIQKIGHRVDAHLGSSLIDMYSKCGSLDDAQMVFKQTNDKNVVLWT SMISCCALHGQGREAVRLFEFMMSEGIKPNVVTFIGVLTACSHAGLIEEGCRYFRLMK EVYGIKPGVDHYSCMVDLYGRAGQLNETKNFIHENGIDHMSAVWRSFLSSCRLHRDIK MAEWVSEKLLHLEPPDAGTYILLSNIYATKQRWEEAAEVRSLMQSRGVKKHPGQSWIQ IKNQVHTFVMGDRSHPQTDKIYAYLDKLIGRLREIGYSSDTKLVMQDVEEEQGEMLLG FHSEKLATAYGIISMTSQKPIRIMKNLRVCNDCHTFMKYTSQLLDREIIVRDIRRFHH FKRGCCSCGDYW" gene complement(31513138..31518078) /locus_tag="TCM_025257" /note="dbxref CacaoGD:Thecc1EG025257" mRNA complement(join(31513138..31513376,31514552..31514611, 31514736..31514819,31515283..31515368,31516163..31516235, 31516446..31516544,31516786..31516929,31517510..31517578, 31517691..31518078)) /locus_tag="TCM_025257" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s08060.1" /inference="similar to AA sequence:ricco:29929.m004593" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09296t00001; inference alignment:Newbler:10:TSA:cgbaB_g09296t00001" CDS complement(join(31513188..31513376,31514552..31514611, 31514736..31514819,31515283..31515368,31516163..31516235, 31516446..31516544,31516786..31516929,31517510..31517578, 31517691..31517768)) /locus_tag="TCM_025257" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29929.m004593" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY09889.1" /db_xref="TAIR:AT5G36290.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SPR6" /translation="MGSTSIRFLFIATFFFFALSSISLAQESGLEAEKEESGGSIKDL GRRGMIVAKNFQNGALDENADLDSMGLNFGFDSAGLGIFDAFLTSLSMILISEIGDET FIIAALMAMRHPKSTVLSGALTALIVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFF GLRLLYIAWRSDSKASQKKEIEEVEEKLETGQGKTSYRRIFSRFCTPIFLESFILTFL AEWGDRSQIATIALATHKNALGVAVGATLGHTICTSLAVLGGSMLAAKISQRTVATIG GVLFLGFSLSSYFYPPL" mRNA complement(join(<31513285..31513376,31514552..31514611, 31514736..31514819,31515283..31515368,31516163..31516235, 31516446..31516544,31516786..31516929,31517385..31517500)) /locus_tag="TCM_025257" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s08060.1" /inference="similar to AA sequence:Phytozome:GSVIVT01019117001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1140t4; inference alignment:Newbler:10:TSA:cgbaB_g09296t00001" CDS complement(join(<31513287..31513376,31514552..31514611, 31514736..31514819,31515283..31515368,31516163..31516235, 31516446..31516544,31516786..31516929,31517385..31517441)) /locus_tag="TCM_025257" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY09890.1" /db_xref="Phytozome:GSVIVT01019117001" /db_xref="TAIR:AT5G36290.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SPR6" /translation="MWFCNSYLEEKQSLTSFQLIVAKNFQNGALDENADLDSMGLNFG FDSAGLGIFDAFLTSLSMILISEIGDETFIIAALMAMRHPKSTVLSGALTALIVMTVL STGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWRSDSKASQKKEIEEVEEKLET GQGKTSYRRIFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNALGVAVGATLG HTICTSLAVLGGS" mobile_element complement(31519016..31520106) /note="source:scaffold_2_CACTA_0244 13620 14705" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31520103..31521036) /note="source:CACAO_M_E49279_F74_scaffold_6 1005 1933" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 31521238..31522990 /note="source:CACAO_on_S_E46_scaffold_2 7885 9639" /mobile_element_type="transposon:TIR/Mutator" mobile_element 31523490..31523682 /note="source:MITE_Unknow_3_4 291 481" /mobile_element_type="transposon:TIR/MITE" gene complement(31523650..31531204) /locus_tag="TCM_025258" /note="dbxref CacaoGD:Thecc1EG025258" mRNA complement(join(31523650..31525462,31528349..31528378, 31529020..31529055,31530494..31531204)) /locus_tag="TCM_025258" /product="Receptor-like protein kinase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s04200.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015372t1" /inference="similar to AA sequence:Phytozome:POPTR_0017s06310.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc5881t1" mobile_element 31523688..31524391 /note="source:INTACT135F_F90_scaffold_2-int 13278 13999" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 31524037..31524400 /note="source:CACAO_Mutator_E1888_scaffold_9 7451 7808" /mobile_element_type="transposon:TIR/Mutator" CDS complement(join(31524423..31525462,31528349..31528378, 31529020..31529055,31530494..31531187)) /locus_tag="TCM_025258" /note="paralog of Thecc1EG015372t1" /codon_start=1 /product="Receptor-like protein kinase" /protein_id="EOY09891.1" /db_xref="Phytozome:POPTR_0017s06310.1" /db_xref="TAIR:AT5G38280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RIJ6" /translation="MHLGRSVCTTFFLLQLFLLCCGAKKLPYECQKPSSCGQILNISH PFGLIGDPRNCGEKPRYQLECENNNTIFNSKDLKYYVLAIDYQNSTIRVVDAGLLQRN NCSSLPFRSFSSCDLEDDGLYLMAMATVLYLSCENPVNSSHYIDTRPCTHGVYNSSNR SSMERQYYSYVMLGYREVSEIADHCKIDMVVKSSSPTIYSENLSYADIHNELLYGIQL WYGEPNPNPFGFLSKIPDFFFFITTSLPLYAAPLIVLLMFAERLCGLPLVIAFLIYKW RRRHLSMFDMVEDFLQSQNNLTPIKYSFSEIKKMTNGFKNKLGEGGYGSVYKGKLRSG CMVAVKILGKSKCNGQEFINEVATIGRIHHVNVVQLIGFCAERSKRALVYEFMANGSL EKYIFSNESSTSLSCKKMYEISIGVARGIEYLHKGCDMQILHFDIKPHNILLDENFTP KVSDFGLAKLYPIEDSMVPQTAARGTMGYMAPELFYKNIGGISYKADVYSFGMLLMEM VGRRKNLNAFAEHSSQIYFPSWVFDQLTLGKEIEIGEITDEEKEIVKKMVIVSLWCIQ MKPSNRPSMNKVVEMLQNEAECLQMPPAPFNLV" mobile_element complement(31526911..31527136) /note="source:scaffold_1_CACTA_0008 7145 7379" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31527423..31527563 /note="source:scaffold_4_CACTA_0483 977 1118" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31528481..31528718 /note="source:scaffold_9_CACTA_0936 455 684" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31530111..31530271 /note="source:scaffold_9_CACTA_0942 16922 17079" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31531840..31531969 /note="source:CACAO_Mariner_E69_scaffold_2 2108 2237" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene 31531974..31535363 /locus_tag="TCM_025259" /note="dbxref CacaoGD:Thecc1EG025259" mRNA join(31531974..31532044,31532767..31533170, 31533305..31533514,31533878..31533904,31533986..31535363) /locus_tag="TCM_025259" /product="Kinase superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma14g26960.1.7" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015373t1" /inference="similar to AA sequence:ricco:30169.m006504" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc6507t2" CDS join(31532771..31533170,31533305..31533514, 31533878..31533904,31533986..31535136) /locus_tag="TCM_025259" /note="dbxref ricco:30169.m006504; paralog of Thecc1EG015373t1" /codon_start=1 /product="Kinase superfamily protein, putative" /protein_id="EOY09892.1" /db_xref="TAIR:AT1G66920.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HWF7" /translation="MACSIGEMVPLFCFFYLLITSTASKEINQECRELRCSRHGPSVR FPFQLKGIHPDHCAYRTGFDLSCTTKNETVLELPVSVKLFVSKIDYQSQMLHLYDPTL TLLKRLQFLIYPILHSVLFSGTLFLKWEGGSDKSPSLFSCTKMYNVYSVPLDILYENH DIQFRWSSPKLECGSCKEEGKICGWKMNASEPQTLCFPKHRERGASTGQVVTGVVLGS CLLAIIVMALYEAYISDKLDRENQIRIKRFMEDYKALKPTRYSYADIKRITNQFKEEL GQGSYGTVFKGKLSNEILVAVKVLNETKGNGEEFINEVGTIGKIHHINVVRLVGFCAD GFRRALVYEFLPNGSLQKFIASADSKTLFLGWEKLQGIALGVAKGLEYLHRGCDQRIL HFDIKPHNILLDHNFNPKICDFGLSKMCSKDQSAVSMTTARGTIGYIAPEVFSRNFGN VSYKSDVYSFGMLLLEMVGGKKNIDGKDDNAVEAYYPDWIHNLLEDGEDLRIPIEGEE SSKIAKKLATVGLWCIQWHPVDRPSMEVVVQMLEGKEDHLKIPPNSFDFTGTRPNASM PERRRRQQELDVISEVHQEMEEINDLQEE" mobile_element 31538118..31538627 /note="source:CACAO_MITE135_scaffold_9 8 524" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(31538628..31539048) /note="source:CACAO_on_E227_scaffold_8 1 814" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 31540571..31552604 /locus_tag="TCM_025260" /note="dbxref CacaoGD:Thecc1EG025260" mRNA join(31540571..31540981,31542987..31543144, 31543573..31543635,31546174..31546293,31546870..31547160, 31548520..31548846,31550665..31551528) /locus_tag="TCM_025260" /product="Zinc finger CCCH domain-containing protein 33 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400028358" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004558t1" /inference="similar to AA sequence:ricco:30128.m009030" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7767t3" CDS join(31540867..31540981,31542987..31543144, 31543573..31543635,31546174..31546293,31546870..31547160, 31548520..31548846,31550665..31550946) /locus_tag="TCM_025260" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30128.m009030; paralog of Thecc1EG004558t1" /codon_start=1 /product="Zinc finger CCCH domain-containing protein 33 isoform 1" /protein_id="EOY09893.1" /db_xref="TAIR:AT3G02830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GXX7" /translation="MEFSFDAGIPMPRTAAAVAAAAAVAVTEGTSLSPSLNQDAMWQM NLRSSETMESGPYPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIAAARMKGEF PERAGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNILGYPLRPNEPECAYY LRTGQCKFGSTCKFHHPQPTNMMVSVRGSPIYQTVPSPTTPGQQSYAGGITNWSRASF IPSPRWQGPSSYAPLILPQGVVSVPGWNAYSGQLASVSSSENLLQTNGNNQYGTTHQN ESATAGSQASFSQFRSGSVPVGFYALQRENVFPERPGQPECQFYMKTGDCKFGTVCRF HHPRERVLPAPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFNHPMGIFTYNYS TSSPSDAPVHRLLGSSSGTAGLNLSSEGLVEAGSTKTRRLSLSENRQLSSSDDNIDTE G" mRNA join(31542917..31543144,31543573..31543635, 31546174..31546293,31546870..31547160,31548520..31548846, 31550665..31551744,31551823..31551909,31552581..31552604) /locus_tag="TCM_025260" /product="Zinc finger CCCH domain-containing protein 33 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400028358" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004558t1" /inference="similar to AA sequence:ricco:30128.m009030" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc278t3; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc271t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7767t3" CDS join(31542992..31543144,31543573..31543635, 31546174..31546293,31546870..31547160,31548520..31548846, 31550665..31550946) /locus_tag="TCM_025260" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30128.m009030; paralog of Thecc1EG004558t1" /codon_start=1 /product="Zinc finger CCCH domain-containing protein 33 isoform 2" /protein_id="EOY09894.1" /db_xref="TAIR:AT3G02830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GXX7" /translation="MWQMNLRSSETMESGPYPERPGEPDCSYYIRTGLCRFGATCRFN HPPNRKLAIAAARMKGEFPERAGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVS LNILGYPLRPNEPECAYYLRTGQCKFGSTCKFHHPQPTNMMVSVRGSPIYQTVPSPTT PGQQSYAGGITNWSRASFIPSPRWQGPSSYAPLILPQGVVSVPGWNAYSGQLASVSSS ENLLQTNGNNQYGTTHQNESATAGSQASFSQFRSGSVPVGFYALQRENVFPERPGQPE CQFYMKTGDCKFGTVCRFHHPRERVLPAPDCVLSPIGLPLRPGEPLCIFYSRYGICKF GPSCKFNHPMGIFTYNYSTSSPSDAPVHRLLGSSSGTAGLNLSSEGLVEAGSTKTRRL SLSENRQLSSSDDNIDTEG" gene 31551632..31553173 /locus_tag="TCM_025262" /note="dbxref CacaoGD:Thecc1EG025262" mRNA join(31551632..31551740,31551820..31551909, 31552581..31552692,31552900..31553173) /locus_tag="TCM_025262" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage" CDS join(31551712..31551740,31551820..31551895) /locus_tag="TCM_025262" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09895.1" /translation="MIRDSLKMNLRLWKMIENLQILLNKIFQISIKYP" mobile_element complement(31554315..31555005) /note="source:CACAO_on_E373_scaffold_1 3 728" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 31556976..31557028 /note="source:CACAO_M_E34409_F73_scaffold_5 2262 2314" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 31556995..31557058 /note="source:scaffold_6_CACTA_0712 1449 1514" /mobile_element_type="transposon:TIR/CACTA" gene 31558742..31569575 /locus_tag="TCM_025263" /note="dbxref CacaoGD:Thecc1EG025263" mRNA join(31558742..31558953,31559085..31559180, 31559268..31559668,31559774..31559871,31561366..31561493, 31561589..31562059,31562148..31562364,31569047..31569575) /locus_tag="TCM_025263" /product="Uncharacterized protein" /inference="similar to AA sequence:Phytozome:GSVIVT01007594001" /note="quality class is strong, express is strong, homology is paralog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc6105t2" CDS join(31558804..31558953,31559085..31559180, 31559268..31559668,31559774..31559871,31561366..31561493, 31561589..31562059,31562148..31562364,31569047..31569297) /locus_tag="TCM_025263" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09896.1" /db_xref="Phytozome:GSVIVT01007594001" /db_xref="TAIR:AT3G01670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IJL5" /translation="MAATTSNSQSSLHSILQTHAFDQTREVDLGPLVKVIESILQNAA AASVSKGAYEGLSDMIGSLENFDGMRQVLDDIRSISCEMSCNLSDVEATTMELLKRLR NYSWNAKVVLAVAAFASSIGELLMLVNHRTTDPIAKSVDLLKGHSFKLDINVLKQLLK AMMDVVNVNFALLVPTLSKIPKEAPSMKDAMEYFPTATYKILSVIVQIASILSKREQI IDSTIKSLAYEVSCVNYVLQKKLERCKIDAEQGEKYHKHDETEYQRDEDVSELIPKIG FWELFGKIKQHMKIQVPEKLRKKHVLFLISDLDISFEEIKVLDRLYQKNNQRYEILWL PIADLTTPYEKTKFSELKQLMKWGAVEPSKIGPAFIEYIKKEWHFIKNPIAVSLNEEG EVTCRNALPMLWTWGNLAFPFTDEKEHHFWNKIDEKNGWKLELLLDEQIDLDIPPRMR SVTFVCLFGGENISWIQAFTEKVKNATAGVSFKLVYVGKNKREGLPSHLLSPDIHVID SEFQWQFWTRLETVMVTANGEMALTIMSNYKDWKKDTTGPLFLEALRNYCTYKIPDIH GCINVHLPVVGEIPGIVSCPTCSKEMEMYYTYRCCSE" gene 31572677..31573725 /locus_tag="TCM_025264" /note="dbxref CacaoGD:Thecc1EG025264" mRNA join(31572677..31573041,31573150..31573725) /locus_tag="TCM_025264" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30128.m009027" /inference="similar to AA sequence:Phytozome:Glyma18g47650.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g12357t00001" CDS join(31572949..31573041,31573150..31573398) /locus_tag="TCM_025264" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09897.1" /db_xref="Phytozome:Glyma18g47650.1" /db_xref="TAIR:AT1G65295.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L9P3" /translation="MKSAYGVTLFLLFLLFSAYVFNYNEATSMAQVNGSSEMVPLVEE KMMKMMMFNESRRKLGSFQICAVCTCCGGAKGLCLPSPCCYAINCNIPNRPFGFCSFT PKTCNCFGCHL" gene complement(31576212..31579806) /locus_tag="TCM_025265" /note="dbxref CacaoGD:Thecc1EG025265" mRNA complement(join(31576212..31576763,31576926..31576986, 31577407..31577520,31577625..31577767,31577841..31577945, 31578276..31578356,31578829..31578870,31579275..31579360, 31579627..31579806)) /locus_tag="TCM_025265" /product="N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30174.m008892" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005507t1" /inference="similar to AA sequence:Phytozome:Glyma08g39420.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc6005t1" CDS complement(join(31576729..31576763,31576926..31576986, 31577407..31577520,31577625..31577767,31577841..31577945, 31578276..31578356,31578829..31578870,31579275..31579344)) /locus_tag="TCM_025265" /note="paralog of Thecc1EG005507t1" /codon_start=1 /product="N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein, putative" /protein_id="EOY09898.1" /db_xref="Phytozome:Glyma08g39420.1" /db_xref="TAIR:AT3G60820.2" /db_xref="UniProtKB/TrEMBL:UniRef50_P42742" /translation="MAFSGFQADVKVLQKQLAARHLVNLSASAQQVGVCKVVAVILIE KHQLKNGREPTLLVAAGLGFTNELPCNGSTASNTLYYRRFFPYYSFNVLGGLDDEGKG CVFTYDAVGSYERVGYGTQGTGSTLIMPFLDNQLKSPSPLLLPAQDAVTQLSESEAVD LVRTVYASATERDIYTVSFFFLLISNFGLGAYCSHPNNFGLRFLEGSHALNCHPQC" mobile_element complement(31578324..31578402) /note="source:scaffold_2_CACTA_0239 8858 8934" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31579897..31580713 /note="source:CACAO_on_E35_scaffold_5 1 817" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(31580706..31585265) /note="source:CACAO_M_E27_F84_scaffold_1 1017 5595" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 31585266..31586214 /note="source:CACAO_M_E49279_F74_scaffold_6 1004 1933" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(31586211..31586770) /note="source:CACAO_M_E27_F84_scaffold_1 472 1021" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 31586804..31587144 /note="source:INTACT746_F84_scaffold_2-int 378 767" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(31587682..31588106) /locus_tag="TCM_025267" /note="dbxref CacaoGD:Thecc1EG025267" mRNA complement(31587682..31588106) /locus_tag="TCM_025267" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30174.m008892" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.73 coverage" CDS complement(31587759..31587965) /locus_tag="TCM_025267" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09899.1" /translation="MTPPILECLPVIAFSLAFTPKSLNCKIFLFFLLSLLITTAKSNS SVFFILLSLMALHVRGSFFFFLCL" gene complement(31588492..31598570) /locus_tag="TCM_025268" /note="dbxref CacaoGD:Thecc1EG025268" mRNA complement(join(31588492..31588880,31589259..31589297, 31590987..31591109,31591185..31591238,31591663..31591729, 31591977..31592045,31592225..31592341,31592888..31592989, 31593083..31593201,31593292..31593372,31594181..31594276, 31594376..31594435,31594807..31594929,31595874..31595967, 31598494..31598570)) /locus_tag="TCM_025268" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30128.m009026" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006097t2" /inference="similar to AA sequence:ricco:30128.m009026" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g07660t00001" CDS complement(join(31588785..31588880,31589259..31589297, 31590987..31591109,31591185..31591238,31591663..31591729, 31591977..31592045,31592225..31592341,31592888..31592989, 31593083..31593201,31593292..31593372,31594181..31594276, 31594376..31594435,31594807..31594929,31595874..31595897)) /locus_tag="TCM_025268" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30128.m009026; paralog of Thecc1EG006097t2" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY09900.1" /db_xref="TAIR:AT4G18530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B3LFC6" /translation="MDMKSIDCIPLVTERKSWSSCLCRLIPATALLCVIYFIGSSFVA PENKEKAFTWGVADILQTSKVENCKNQCRPPGSEPLPEGIITKTSNLQLRPLWGFPKK DDTSSSLFAVAVGIKQKDLVHEMVKKFLSSGFAVMLFHYDGIVDEWKSFEWNDQVIHV SARNQTKWWFAKRFLHPDVVSEYSYIFLWDEDLGVEDFHPKKYVSIVESERLEISQPA LDPAKSEVHHQITARGRKSMVHRRTFKHRANGRSCDGQSKAPPCTGWIEMMAPVFSRA AWRCVWYMIQNDLIHAWGLDMQLGYCAQGDRTKNIGVVDAEYIVHYNRPTLGGTAEKN HSTVEGGHRNKKSSHSHWKDPRVEVRRQSYIELDIFRKRWEKAVKNDKCWVDPYQ" mRNA complement(join(31589153..31589297,31590987..31591109, 31591185..31591238,31591663..31591729,31591977..31592045, 31592225..31592341,31592888..31592989,31593083..31593201, 31593292..31593372,31594181..31594276,31594376..31594435, 31594807..31594929,31595874..31595950)) /locus_tag="TCM_025268" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30128.m009026" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006097t2" /inference="similar to AA sequence:ricco:30128.m009026" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09423t00001; inference alignment:Newbler:10:TSA:cgbaP2_g07660t00001; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc700t16" CDS complement(join(31589247..31589297,31590987..31591109, 31591185..31591238,31591663..31591729,31591977..31592045, 31592225..31592341,31592888..31592989,31593083..31593201, 31593292..31593372,31594181..31594276,31594376..31594435, 31594807..31594929,31595874..31595897)) /locus_tag="TCM_025268" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30128.m009026; paralog of Thecc1EG006097t2" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY09901.1" /db_xref="TAIR:AT4G18530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B3LFC6" /translation="MDMKSIDCIPLVTERKSWSSCLCRLIPATALLCVIYFIGSSFVA PENKEKAFTWGVADILQTSKVENCKNQCRPPGSEPLPEGIITKTSNLQLRPLWGFPKK DDTSSSLFAVAVGIKQKDLVHEMVKKFLSSGFAVMLFHYDGIVDEWKSFEWNDQVIHV SARNQTKWWFAKRFLHPDVVSEYSYIFLWDEDLGVEDFHPKKYVSIVESERLEISQPA LDPAKSEVHHQITARGRKSMVHRRTFKHRANGRSCDGQSKAPPCTGWIEMMAPVFSRA AWRCVWYMIQNDLIHAWGLDMQLGYCAQGDRTKNIGVVDAEYIVHYNRPTLGGTAEKN HSTVEGGHRNKKSSHSHWKDPRVEVSV" gene complement(31597544..31604436) /locus_tag="TCM_025269" /note="dbxref CacaoGD:Thecc1EG025269" mRNA complement(join(31597544..31597874,31601468..31601702, 31601791..31601867,31602839..31602996,31603444..31603529, 31603646..31604436)) /locus_tag="TCM_025269" /product="Auxin efflux carrier component" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019126001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018366t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019126001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7763t1" mobile_element complement(31600169..31600347) /note="source:scaffold_5_CACTA_0610 5112 5297" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(31601630..31601702,31601791..31601867, 31602839..31602996,31603444..31603529,31603646..31604313)) /locus_tag="TCM_025269" /note="paralog of Thecc1EG018366t1" /codon_start=1 /product="Auxin efflux carrier component" /protein_id="EOY09902.1" /db_xref="Phytozome:GSVIVT01019126001" /db_xref="TAIR:AT5G16530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N158" /translation="MIGWEDVCKVVVAMVPLYVALMLGYGSVKWWRIFTAEQCDAINR LVCYFTLPLFTVEFTTHIDPFQMNYRFIGADTISKLVIVVVLAFWAKCSSKGSYCWSI TSFSLSTLTNALVVGVPLMKAMYGQTGVDLVVQSSVVQAIIWLTILLFVLEFRRSGVS ISSATKDGNEQEKDVEGNTDNAGVLSTRPSFWNLMKVVGMKLAMNPNSYACVIGLAYA CVANRWHFEMPSIMEGSILIMSKAGTGTAMFSMGTFMALQEKIIACGTSLTIFGMVLR FIAGPAAMAIGAIAVGLHGAVLRVAIIQAALPQSITSFIFAKEYGMHAEVLSTAVIFG TIVSLPVLVAYYAILESVH" mobile_element complement(31602048..31602549) /note="source:CACAO_Again_on_E141_scaffold_5 1 533" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(31602366..31602574) /note="source:scaffold_5_CACTA_0610 7362 7574" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31603334..31603455 /note="source:CACAO_M_E24751_F297_scaffold_4 1210 1340" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 31606421..31613635 /locus_tag="TCM_025270" /note="dbxref CacaoGD:Thecc1EG025270" mRNA join(31606421..31606748,31608120..31608414, 31613378..31613635) /locus_tag="TCM_025270" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.33 coverage" CDS 31608130..31608351 /locus_tag="TCM_025270" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09903.1" /translation="MIDLPLAFSNGNKQIVRCCVRVWINNSRRQTVAGKHLTASESTR DTLACCLLKTNKCQMVQQSPTSQGQQPVE" gene complement(31608265..31619593) /locus_tag="TCM_025271" /note="dbxref CacaoGD:Thecc1EG025271" mRNA complement(join(31608265..31608618,31613902..31615393, 31618579..31618954,31619049..31619593)) /locus_tag="TCM_025271" /product="Cystathionine beta-synthase family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30128.m009024" /inference="similar to AA sequence:ricco:30128.m009024" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14389t2" mobile_element complement(31611899..31611944) /note="source:CACAO_M_E57469_F369_scaffold_9 1278 1323" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA complement(join(31613287..31615393,31616018..31616158)) /locus_tag="TCM_025271" /product="Cystathionine beta-synthase family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30128.m009024" /inference="similar to AA sequence:Phytozome:Glyma09g38710.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b024445t1a2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14389t2" CDS complement(join(31614463..31615393,31618579..31618922)) /locus_tag="TCM_025271" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30128.m009024" /codon_start=1 /product="Cystathionine beta-synthase family protein isoform 1" /protein_id="EOY09904.1" /db_xref="TAIR:AT1G65320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GZA4" /translation="MASVFLYHVVGDLTVGKPELVEFSETETVESAIRAIGESTECGI PVWKRRSHVGMIEKNEMRQQRFVGILTSLDIVSFLARTQCLEDQDKAMKAQVSDVVVP NNALLKIVDPGTRLIDALEMMKQGVRRLLVPKSKVWKGMSKRFSILYNGKWLKNIENG SSNNLITNANPPSSSSTPTYMRDKFCCLSREDIIRFLIGCLGALAPVPLSSISSLGAI NLNYSSIEASLPALEATQKHPGDPSAVAVVEVTPDGHHKILGEISASKLWKCDYLAAA WALANLSAGQFVMGVEDNVSSRLLPDFSVNSAVQDNKIVNGVGSTRPRKFSSRSIGFN PVSPSFGVGRSMYRGRSAPLTCKTTSSLAAVMAQMLSHRATHVWVTEDENDDILVGVV GYADILVAVTKQPAAMIPTTRSINELGTEIQS" CDS complement(31614463..31615374) /locus_tag="TCM_025271" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Cystathionine beta-synthase family protein isoform 2" /protein_id="EOY09905.1" /db_xref="Phytozome:Glyma09g38710.1" /db_xref="TAIR:AT1G65320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GZA4" /translation="MMKQGVRRLLVPKSKVWKGMSKRFSILYNGKWLKNIENGSSNNL ITNANPPSSSSTPTYMRDKFCCLSREDIIRFLIGCLGALAPVPLSSISSLGAINLNYS SIEASLPALEATQKHPGDPSAVAVVEVTPDGHHKILGEISASKLWKCDYLAAAWALAN LSAGQFVMGVEDNVSSRLLPDFSVNSAVQDNKIVNGVGSTRPRKFSSRSIGFNPVSPS FGVGRSMYRGRSAPLTCKTTSSLAAVMAQMLSHRATHVWVTEDENDDILVGVVGYADI LVAVTKQPAAMIPTTRSINELGTEIQS" mobile_element 31616323..31616659 /note="source:CACAO_M_E44112_F1_scaffold_5 1 337" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(31620159..31620348) /note="source:scaffold_5_CACTA_0610 5090 5278" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31621383..31621480) /note="source:scaffold_5_CACTA_0607 6549 6645" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31622467..31622551) /note="source:scaffold_5_CACTA_0615 211 296" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31622538..31622626 /note="source:scaffold_5_CACTA_0607 6571 6665" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31622655..31622721 /note="source:scaffold_5_CACTA_0610 5691 5747" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31622726..31622920 /note="source:INTACT1_F64_scaffold_3-int 1173 1362" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(31622749..31622980) /note="source:CACAO_MITE61_scaffold_4 512 745" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(31622985..31623066) /note="source:scaffold_4_CACTA_0511 5719 5800" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31623067..31623588) /note="source:CACAO_Mariner_E38_scaffold_2 1317 1841" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 31624643..31625098 /note="source:CACAO_on_S_E390_scaffold_9 2388 2850" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(31625064..31625253) /note="source:INTACT51_F23_scaffold_9-int 5257 5445" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(31625167..31625449) /note="source:CACAO_on_E175_scaffold_1 448 747" /mobile_element_type="transposon:TIR/hAT" gene complement(31625697..31627466) /locus_tag="TCM_025274" /note="dbxref CacaoGD:Thecc1EG025274" mRNA complement(31625697..31627466) /locus_tag="TCM_025274" /product="Anthocyanin 3'-O-beta-glucosyltransferase, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0009s10120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007108t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s30980.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc2051t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc2135t1" CDS complement(31625959..31627413) /locus_tag="TCM_025274" /note="paralog of Thecc1EG007108t1" /codon_start=1 /product="Anthocyanin 3'-O-beta-glucosyltransferase, putative" /protein_id="EOY09906.1" /db_xref="Phytozome:POPTR_0001s30980.1" /db_xref="TAIR:AT4G34131.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GHC1" /translation="MASNSRQLHFIFFPQLAHGHLIPTVDMARLFAMHGVKVTIVTTP LNALLFASKIQREKQLGFDISTLVIKFPASEVGLPEGCENVSSITSQEMIPKFLKAIN LFQQPLERILEELRPDCLVADWMFPWATDIAGKFGIPRLVFHGTSCFALCVVDTLIRH EPFKKISSESEPFDVPGLPDQIKMTRLQLPDYIKDTAETERQKLIDEAIKSELTSYGV IVNSFHELEPAYTQHYSKVMRRKAWQVGPVSLCNMNNEDKAERGNAASIDRHECLRWL DSKKPNSVLYICFGSIFRTSAAQLNEIAKGLEASGQDFIWVVRKVNDEDKEEWLPEGF EERMEGKGLIIRGWAAQVLILDHEAVGGFMTHCGWNSTIESITAGVPMVTWPLCAEQF CNEKLVTEVLKIGVDVGAKEWCRWGDDPSTKFKVMKEDIERAVSRVMVGEEAEEMRSR AKELKNMARKAMEEGGSSYSDLNALLDELRLSCP" gene 31628441..31632157 /locus_tag="TCM_025275" /note="dbxref CacaoGD:Thecc1EG025275" mRNA 31628441..31632157 /locus_tag="TCM_025275" /product="Serine-threonine protein kinase" /inference="alignment:exonerate- protein:2:ricco:30128.m009023" /inference="similar to AA sequence:Phytozome:POPTR_0013s08530.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7801t1" CDS 31629024..31631222 /locus_tag="TCM_025275" /codon_start=1 /product="Serine-threonine protein kinase" /protein_id="EOY09907.1" /db_xref="Phytozome:POPTR_0013s08530.1" /db_xref="TAIR:AT1G65380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E5GBK8" /translation="MELKWVVAVFHPWKPSELHTLPLLLLIILPLCSFNLSQCFDLDP EDKASLLLFRSSVKDPGQSLETWVGSNCTSWTGISCENRTGRVVSVNLANMNLSGKVH PGLCELSFLEYLKLSQNNFNGTIPTCFGSLGSLKTLDLSHNSFSGVLPDDIMRLRQLT ELVLNANRELGGVLPWWIGNFSSNLEKLDLSSNSFHGEIPESVFYLKSLKHLDLGDNH LSGNIHEYYQSLEFLNLASNRLSGTLPCFSASTQSLTVMILANNSLVGGIPTCIASLE ALTHLNLSFNHLSYGLSPRLVFTEKLLVLDLSFNDLSGPLPSKIAEATEKSGLVLLDL SHNHFSGKIPLRITELKSLQALFLSHNLLTGAIPARIGKLTYLQVIDLSHNSLSGSIP LDIVGCFQLLALMLNNNNISGELQPELDALDSLKILDVSHNKISGEIPLTLAGLKSLE IVDLSSNNLSGALNDAITKWSNLKYLSLAQNKFSGNISSWLFTFGAIQMIDLSGNKFS GVIPDVSFNISFHNNSGNSDRAPKEPFIAMRNAEIKISVMVIDSSELSFNYKVSSTVG IDLSDNLLRGEIPDVLFEVEGLEYLNLSYNFLDGELPSLEKMWNLRVLDLSHNSLSGQ IPANISTLKDLVFLNLSYNSFSGSVPDNQGYQRFPGAFAGNPDLCVESSGDGCYRASP TVVPGRTFEEVEGPILVWVFCVSAFVSFYFGVVALFCSARARSYILQTKF" gene 31633061..31633855 /locus_tag="TCM_025276" /note="dbxref CacaoGD:Thecc1EG025276" mRNA join(31633061..31633166,31633319..31633390, 31633514..31633855) /locus_tag="TCM_025276" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7803t3" CDS join(31633126..31633166,31633319..31633390, 31633514..31633595) /locus_tag="TCM_025276" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09908.1" /translation="MSCCGDCCGGGSIGYPDLGYLEKTTTETFVSGVATMKMSYEGPE ERFGAENECKQCGFSNCSCK" gene complement(31634255..31642263) /locus_tag="TCM_025277" /note="dbxref CacaoGD:Thecc1EG025277" mRNA complement(join(31634255..31634855,31635861..31635945, 31636025..31636200,31637876..31637983,31638320..31638395, 31638544..31638605,31638707..31638784,31638908..31639003, 31640786..31640914,31641611..31642263)) /locus_tag="TCM_025277" /product="Non-intrinsic ABC protein 11 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0002s22890.1" /inference="similar to AA sequence:ricco:30128.m009022" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7809t3; inference alignment:Newbler:10:TSA:cgbaL_g02737t00001; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1237t19" mRNA complement(join(31634320..31635217,31635306..31635368, 31635861..31635945,31636025..31636200,31637876..31637983, 31638320..31638395,31638544..31638605,31638707..31638784, 31638908..31638998,31639808..31639950,31640786..31640914, 31641433..31641501,31641611..31642098)) /locus_tag="TCM_025277" /product="Non-intrinsic ABC protein 11 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0002s22890.1" /inference="similar to AA sequence:ricco:30128.m009022" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02737t00001" CDS complement(join(31634817..31634855,31635861..31635945, 31636025..31636200,31637876..31637983,31638320..31638395, 31638544..31638605,31638707..31638784,31638908..31639003, 31640786..31640914,31641611..31641811)) /locus_tag="TCM_025277" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30128.m009022" /codon_start=1 /product="Non-intrinsic ABC protein 11 isoform 2" /protein_id="EOY09910.1" /db_xref="TAIR:AT1G65410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9AT00" /translation="MASTVFLSSSLGLFTSATSSKNCDLGTKRSKCCWFNKKRKEQKN VICACVAPPRNLGRDGFSGSKLTESSKSENLSKEVKNENGSDVLIECRNVYKSFGEKH ILQGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYVRGRKRSGLISDDE LSGLRIGLVFQSAALFDSLTVRENVGFLLYEHSGMPDEQISKLVTENLAAVGLKGVED RLPSELSGGMKKRVALARSIICDITKESIEPEVLLYDEPTAGLDPIASTVVEDLIRSV HTKGEDALGKPGKIASYVVVTHQHSTIRRAVDRLLFLHEGKVVWQGMTDEFTTSTNPI VQQFASGSLDGPIRY" mRNA complement(join(31634829..31634855,31635861..31636200, 31637876..31637983,31638320..31638395,31638544..31638605, 31638707..31638784,31638908..31639003,31640786..31640914, 31641611..31642257)) /locus_tag="TCM_025277" /product="Non-intrinsic ABC protein 11 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0002s22890.1" /inference="similar to AA sequence:ricco:30128.m009022" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1287t9; inference alignment:Newbler:10:TSA:cgbaL_g02737t00001; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1237t19" CDS complement(join(31635200..31635217,31635306..31635368, 31635861..31635945,31636025..31636200,31637876..31637983, 31638320..31638395,31638544..31638605,31638707..31638784, 31638908..31638998,31639808..31639950,31640786..31640914, 31641433..31641501,31641611..31641811)) /locus_tag="TCM_025277" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30128.m009022" /codon_start=1 /product="Non-intrinsic ABC protein 11 isoform 1" /protein_id="EOY09909.1" /db_xref="TAIR:AT1G65410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9AT00" /translation="MASTVFLSSSLGLFTSATSSKNCDLGTKRSKCCWFNKKRKEQKN VICACVAPPRNLGRDGFSGSKLTVDLKNCAVQLSGLCLIANSVFAYESSKSENLSKEV KNENGSDVLIECRNVYKSFGEKHILQGVSFKTWLTLLGRQLMTPLGFRWQFSAELIDS FDWCSSRCALVVLILDVLQSWHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYVRG RKRSGLISDDELSGLRIGLVFQSAALFDSLTVRENVGFLLYEHSGMPDEQISKLVTEN LAAVGLKGVEDRLPSELSGGMKKRVALARSIICDITKESIEPEVLLYDEPTAGLDPIA STVVEDLIRSVHTKGEDALGKPGKIASYVVVTHQHSTIRRAVDRLLFLHEGKVVWQGM TDEFTTSTNPIVQQGTLMHTDTCISKVCMSAHAHREFLYS" CDS complement(join(31635988..31636200,31637876..31637983, 31638320..31638395,31638544..31638605,31638707..31638784, 31638908..31639003,31640786..31640914,31641611..31641811)) /locus_tag="TCM_025277" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30128.m009022" /codon_start=1 /product="Non-intrinsic ABC protein 11 isoform 3" /protein_id="EOY09911.1" /db_xref="TAIR:AT1G65410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9AT00" /translation="MASTVFLSSSLGLFTSATSSKNCDLGTKRSKCCWFNKKRKEQKN VICACVAPPRNLGRDGFSGSKLTESSKSENLSKEVKNENGSDVLIECRNVYKSFGEKH ILQGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYVRGRKRSGLISDDE LSGLRIGLVFQSAALFDSLTVRENVGFLLYEHSGMPDEQISKLVTENLAAVGLKGVED RLPSELSGGMKKRVALARSIICDITKESIEPEVLLYDEPTAGLDPIASTVVEDLIRSV HTKGEDALGKPGKIASYVVVTHQHSTIRRAVDRFSEIMMLYCFC" mobile_element 31642312..31642538 /note="source:scaffold_9_CACTA_0942 16623 16895" /mobile_element_type="transposon:TIR/CACTA" gene 31642921..31644620 /locus_tag="TCM_025278" /note="dbxref CacaoGD:Thecc1EG025278" mRNA 31642921..31644620 /locus_tag="TCM_025278" /product="Mitogen-activated protein kinase kinase kinase 19, putative" /inference="alignment:exonerate- protein:2:ricco:30115.m001222.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000635t1" /inference="similar to AA sequence:Phytozome:POPTR_0007s10930.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.27 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc5314t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2968t1" CDS 31643294..31644385 /locus_tag="TCM_025278" /note="paralog of Thecc1EG000635t1" /codon_start=1 /product="Mitogen-activated protein kinase kinase kinase 19, putative" /protein_id="EOY09912.1" /db_xref="Phytozome:POPTR_0007s10930.1" /db_xref="TAIR:AT5G67080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H6H0" /translation="MEWIRGETIGHGSFGTVNLVVPKKGTSKSCPVMAVKSCETINSA SLKHEKEVLDQLGFCPQIIRCFGEEYTAENGGEYNLFLEYADKGCLADQVKKSGGNLI ESDVRRYARSILKGLRFVHAKGFAHCDIKLQNILLFGNGDVKIADFGLAKRNGEEEGE GPHRRIEIRGTPLSIAPESVMENQYDSPVDIWALGCAIVEMFTGKPAWTFKPGSNVAA LLIKIGVSDELPVVPAELSEYGKDFLSKCFVKDPNNRWTAEMLLDHPFVAADDENIAI MNRFEEEASTSPKCSFEEFTMSPRCPFDFPDWVSTQSTVSSQSSFQENSSPVTLFPSY VSSPLDRIRQLACDQAPNWSVSGSWITSR" gene 31646001..31651970 /locus_tag="TCM_025279" /note="dbxref CacaoGD:Thecc1EG025279" mRNA join(31646001..31646140,31648947..31649161, 31649275..31649464,31649610..31650001,31650120..31651970) /locus_tag="TCM_025279" /product="Serine/threonine-protein kinase PBS1" /inference="alignment:exonerate- protein:2:ricco:30128.m009005" /inference="similar to AA sequence:ricco:30128.m009005" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7783t1" mobile_element complement(31646385..31646485) /note="source:scaffold_4_CACTA_0511 15772 15867" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31646415..31646502 /note="source:CACAO_M_E69780_F2_scaffold_9 1562 1652" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 31646503..31646516 /note="source:scaffold_1_CACTA_0023 6351 6455" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31647106..31647163) /note="source:CACAO_M_S_E124302_F266_scaffold_10 1387 1442" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(31649003..31649161,31649275..31649464, 31649610..31650001,31650120..31651604) /locus_tag="TCM_025279" /note="dbxref ricco:30128.m009005" /codon_start=1 /product="Serine/threonine-protein kinase PBS1" /protein_id="EOY09913.1" /db_xref="TAIR:AT5G16500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1PDW3" /translation="MEVSNQVESGNIPVQTFNFRELAAATKNFRQECLLGEGGFGRVY RGTLQATGQVVAVKQLDRNAMQGNNEFLVEVAKLSLLRHPNLVNLIGYCADGDQRLLV YEFMPGGCVEGHLLDIKPGKKPLDWITRMKIAYGAAQGLEYLHDKANPPVIYRDLKSS NVLLDEEFNPKLSDIGLAKLGPSADKMPMQSRVMGTYGYSAPEYSRSGKLTTTADVYS FGVVLLELITGRRAIDTTKPVDEQNLVAWAQPIFREPKKFPDMADPLLKKQFPERGLN QAVAIAAMCLQDEPAARPLMSDVVTALSFLSMATEENSIPPTLPPSISSKLHCISSKL QFLEHSDTGKLKEQHNSVHNADTDSESEHDQNDEVRNSQEGSVSSSRSSSVHTPGKSA LTIDHSRRSSDGSASSREESSISSNEGGASLSQKSSAKSLFSLGHASSEETSRDAHGK SDSLSQKSSNNSLFSSSHKYSKESQDASFSPSHEDSRKSPFSSSHKSSRKSPENDDYF SSSSSSDSVDESPSSSRERSSRKLLDKSNYASQKSSMKPQDENVSLGHNSSRKSTDGS VSVSDKSSWKSQDENDSLDHNSSRKLVDGSVSLSRKSSRKSKDGNVSLRRNSSRKSPE GNVSLSRKSSRRSQEGNDSLHHNSSKNSADASVSLSRKSSRKSQHGNVSLHHNSSKGS HDESNSSGSSRKSRRRSMKVNDSLSYISSGGSQDGSEIDLDNTHRRPLTFTKAKTTVY F" gene 31652179..31654886 /locus_tag="TCM_025280" /note="dbxref CacaoGD:Thecc1EG025280" mRNA join(31652179..31652213,31653322..31653748, 31653830..31653946,31654591..31654886) /locus_tag="TCM_025280" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01026613001" /inference="similar to AA sequence:frave:gene12987" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaB_g13050t00001; inference alignment:Newbler:10:TSA:cgbaB_g13050t00001" mRNA join(31652185..31652216,31653326..31653748, 31653830..31653946,31654591..31654829) /locus_tag="TCM_025280" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01026613001" /inference="similar to AA sequence:frave:gene12987" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaL_g12637t00001; alternateUTRof:Thecc1EG025280t1; inference alignment:Newbler:10:TSA:cgbaB_g13050t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1402t2" mRNA join(31652186..31652213,31653322..31653748, 31653830..31653946,31654121..31654201,31654591..31654832) /locus_tag="TCM_025280" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01026613001" /inference="similar to AA sequence:frave:gene12987" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7792t1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1402t2; inference alignment:Newbler:10:TSA:cgbaB_g13050t00001" mRNA join(31652191..31652245,31653322..31653748, 31653830..>31653855) /locus_tag="TCM_025280" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01026613001" /inference="similar to AA sequence:frave:gene12987" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1398t9; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1402t2; inference alignment:Newbler:10:TSA:cgbaB_g13050t00001" CDS join(31653380..31653748,31653830..31653946, 31654591..31654668) /locus_tag="TCM_025280" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene12987" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY09914.1" /db_xref="TAIR:AT3G51510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PCJ0" /translation="MMVVTLLSPCNSTLIRGVLIKENSSCPRLFLGIRERILNQHATR CFHVYQNKRLSHRFLVFAATEGSAKSSKSEETVPSWARPDSDEPPPWAQDEGKEYTAQ QSFEIPFYVYLLASAVTAIAAIGSIFEYANQRPVFGVVNSDSIFYAPLLGFFAFTGIP TSAFLWFKSVQAANKEAEEQDRRDGYL" CDS join(31653380..31653748,31653830..31653946, 31654591..31654668) /locus_tag="TCM_025280" /note="encoded by transcript variant 4; alternatively spliced; dbxref frave:gene12987" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY09917.1" /db_xref="TAIR:AT3G51510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PCJ0" /translation="MMVVTLLSPCNSTLIRGVLIKENSSCPRLFLGIRERILNQHATR CFHVYQNKRLSHRFLVFAATEGSAKSSKSEETVPSWARPDSDEPPPWAQDEGKEYTAQ QSFEIPFYVYLLASAVTAIAAIGSIFEYANQRPVFGVVNSDSIFYAPLLGFFAFTGIP TSAFLWFKSVQAANKEAEEQDRRDGYL" CDS join(31653380..31653748,31653830..31653946, 31654121..31654168) /locus_tag="TCM_025280" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene12987" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY09915.1" /db_xref="TAIR:AT3G51510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PCJ0" /translation="MMVVTLLSPCNSTLIRGVLIKENSSCPRLFLGIRERILNQHATR CFHVYQNKRLSHRFLVFAATEGSAKSSKSEETVPSWARPDSDEPPPWAQDEGKEYTAQ QSFEIPFYVYLLASAVTAIAAIGSIFEYANQRPVFGVVNSDSIFYAPLLGFFAFTGIP TSFEELQFILASLDFSC" CDS join(31653380..31653748,31653830..>31653853) /locus_tag="TCM_025280" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene12987" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY09916.1" /translation="MMVVTLLSPCNSTLIRGVLIKENSSCPRLFLGIRERILNQHATR CFHVYQNKRLSHRFLVFAATEGSAKSSKSEETVPSWARPDSDEPPPWAQDEGKEYTAQ QSFEIPFYVYLLASAVTAIAAIGSIFEYA" mobile_element 31655628..31655702 /note="source:scaffold_2_CACTA_0280 596 673" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31656027..31656127) /note="source:CACAO_PIF_E144_scaffold_10 3565 3665" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 31657491..31659763 /locus_tag="TCM_025281" /note="dbxref CacaoGD:Thecc1EG025281" mRNA join(31657491..31657882,31658304..31658422, 31658686..31659763) /locus_tag="TCM_025281" /product="Phloem protein 2-B10, putative" /inference="alignment:exonerate- protein:2:ricco:29908.m006141" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040839t1" /inference="similar to AA sequence:ricco:29908.m006141" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaL_g12023t00001" CDS join(31657574..31657882,31658304..31658422, 31658686..31659286) /locus_tag="TCM_025281" /note="dbxref ricco:29908.m006141; paralog of Thecc1EG040839t1" /codon_start=1 /product="Phloem protein 2-B10, putative" /protein_id="EOY09918.1" /db_xref="TAIR:AT2G02230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IL91" /translation="MKSEVSEIEGGGRGGPSLPSPLLDLNALPQDCIAAILSFTTPRD ACRLSAVSTVFKSAAESDAVWECFLPSDYRAIIPSSLASKKALYLSLCDNPVLIDGGR KSFSLERGSDKKCYMLSARDLFIVWGDTPTYWRWISIPESRFEEVAELISVCWLEIRG RISISMLSPMTHYKAYLVFKATTSGAYGFDLQSVEASVGLVGTEGQKRTVYLDSERRR RGRFPIAPRGIGLFNRSRFFGLQASVPTTASDDQYPKVRVDGWLEIELGEFFNEGCTD EELEMSVLEIKGGHWKGGLVIQGIEIRPNLCGGSENNAPVPSDLCLNTGILSGQDSKN QDFSASLP" gene 31662651..31663792 /locus_tag="TCM_025282" /note="dbxref CacaoGD:Thecc1EG025282" mRNA 31662651..31663792 /locus_tag="TCM_025282" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.22 coverage" CDS 31663231..31663461 /locus_tag="TCM_025282" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09919.1" /translation="MQTWSSSKTTRTQNLSQTSSENTKCQLINQTTCQPHGIPHKDRT KLLLYYSYRWYPQVMHVSVLPEKWCAPKFILR" gene 31664452..31733204 /locus_tag="TCM_025283" /note="dbxref CacaoGD:Thecc1EG025283" mRNA join(31664452..31664787,31665006..31665080, 31666632..31666801,31667383..31667625,31669131..31669242, 31669839..31670009,31670296..31670359,31670613..31670670, 31670751..31670928,31673771..31673901,31674271..31674373, 31674470..31674824,31732687..31733204) /locus_tag="TCM_025283" /product="Sterol 3beta-glucosyltransferase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma18g47490.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003027t2" /inference="similar to AA sequence:ricco:30128.m009009" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc267t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9256t1; inference alignment:Newbler:10:TSA:cgbaB_g09717t00001" mRNA join(31664571..31664787,31665006..31665080, 31666632..31666801,31667383..31667625,31669131..31669242, 31669839..31670009,31670296..31670359,31670613..31670670, 31670751..31670928,31673771..31673901,31674271..31674373, 31674470..31674546,31675694..31675741,31675819..31675968, 31676913..31677050,31677242..31677373,31677460..31678390) /locus_tag="TCM_025283" /product="Sterol 3beta-glucosyltransferase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma18g47490.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003027t1" /inference="similar to AA sequence:ricco:30128.m009009" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9256t1" mRNA join(31664609..31664787,31665006..31665080, 31666632..31666801,31667383..31667625,31669131..31669242, 31669839..31670009,31670296..31670359,31670613..31670670, 31670751..31670928,31673771..31673901,31674271..31674373, 31674470..31674546,31675694..31675741,31704610..31704759, 31705753..31705950,31706035..31706282) /locus_tag="TCM_025283" /product="Sterol 3beta-glucosyltransferase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma18g47490.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003027t1" /inference="similar to AA sequence:ricco:30128.m009009" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9256t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9256t1; inference alignment:Newbler:10:TSA:cgbaB_g09717t00001" CDS join(31664685..31664787,31665006..31665080, 31666632..31666801,31667383..31667625,31669131..31669242, 31669839..31670009,31670296..31670359,31670613..31670670, 31670751..31670928,31673771..31673901,31674271..31674373, 31674470..31674546,31675694..31675741,31704610..31704759, 31705753..31705863) /locus_tag="TCM_025283" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30128.m009009; paralog of Thecc1EG003027t1" /codon_start=1 /product="Sterol 3beta-glucosyltransferase isoform 2" /protein_id="EOY09921.1" /db_xref="TAIR:AT3G07020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M8Z7" /translation="MAELLETSHRNSNVTSGDISIEISGDDSNAANSSGCSTDVPVDF EIEIVGDDDNGSEASGLTDRSLAGQNMHGKASTSAMNSGSNQQPKSRKERQSSKLALY IAKFLDEKVPFRKRIKFLNQVANVKHDGTVQFDVPVDMKPHTLDFGTGVVYDHAPDKE HYTEDIPEIPPPLQIVMLIVGTRGDVQPFVAIGKRLQADGHRVRLATHSNFKDFVLDA GLEFFPLGGDPKVLAGYMVKNKGFLPSVPSEIPVQRQQIREIIFSLLPACVADDLDNN VKFDVDAIIANPPAYGHTHVAEALKVPLHIFFTMPWTPTSEFPHPLSRVKQQVGYRLS YHIVDSLIWLGIRDMINEFRKKRLKLRPVTYLRGSYSSPPDVPYGYMWSPHLVPKPKD WGPIIDVVGFCFLDLASSYEPPESLVKWLEGDKKPIYIGFGSLPVQEPERMTQIIVQA LEKTGQRGIINKGWGGLGNLAEQKHFVYLLDNCPHDWLFSRCMAVVHHGGAGTTAAGL KAACPTTIVPFFGDQPFWGERVHSRGVGPAPIPVEEFSLEKLVAAIKFMLDPEVKRRA VELAEAMAGEDGVAGAVNALYKHFPGKKSKG" CDS join(31664685..31664787,31665006..31665080, 31666632..31666801,31667383..31667625,31669131..31669242, 31669839..31670009,31670296..31670359,31670613..31670670, 31670751..31670928,31673771..31673901,31674271..31674373, 31674470..31674546,31675694..31675741,31675819..31675968, 31676913..31677050,31677242..31677373,31677460..31677462) /locus_tag="TCM_025283" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30128.m009009; paralog of Thecc1EG003027t1" /codon_start=1 /product="Sterol 3beta-glucosyltransferase isoform 1" /protein_id="EOY09920.1" /db_xref="TAIR:AT3G07020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M8Z7" /translation="MAELLETSHRNSNVTSGDISIEISGDDSNAANSSGCSTDVPVDF EIEIVGDDDNGSEASGLTDRSLAGQNMHGKASTSAMNSGSNQQPKSRKERQSSKLALY IAKFLDEKVPFRKRIKFLNQVANVKHDGTVQFDVPVDMKPHTLDFGTGVVYDHAPDKE HYTEDIPEIPPPLQIVMLIVGTRGDVQPFVAIGKRLQADGHRVRLATHSNFKDFVLDA GLEFFPLGGDPKVLAGYMVKNKGFLPSVPSEIPVQRQQIREIIFSLLPACVADDLDNN VKFDVDAIIANPPAYGHTHVAEALKVPLHIFFTMPWTPTSEFPHPLSRVKQQVGYRLS YHIVDSLIWLGIRDMINEFRKKRLKLRPVTYLRGSYSSPPDVPYGYMWSPHLVPKPKD WGPIIDVVGFCFLDLASSYEPPESLVKWLEGDKKPIYIGFGSLPVQEPERMTQIIVQA LEKTGQRGIINKGWGGLGNLAEQKHFVYLLDNCPHDWLFSRCMAVVHHGGAGTTAAGL KAACPTTIVPFFGDQPFWGERVHSRGVGPAPIPVEEFSLEKLVAAIKFMLDPEVKRRA VELAEAMAGEDGVAGAVNAFYKQFPGKKSKDESKAAPTPSGNCIASLVFPSLDDLQIT SFFCHCSRPVKCLAGSNLSRVKMHAMR" CDS join(31664685..31664787,31665006..31665080, 31666632..31666801,31667383..31667625,31669131..31669242, 31669839..31670009,31670296..31670359,31670613..31670670, 31670751..31670928,31673771..31673901,31674271..31674373, 31674470..31674588) /locus_tag="TCM_025283" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30128.m009009; paralog of Thecc1EG003027t2" /codon_start=1 /product="Sterol 3beta-glucosyltransferase isoform 3" /protein_id="EOY09922.1" /db_xref="TAIR:AT3G07020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M8Z7" /translation="MAELLETSHRNSNVTSGDISIEISGDDSNAANSSGCSTDVPVDF EIEIVGDDDNGSEASGLTDRSLAGQNMHGKASTSAMNSGSNQQPKSRKERQSSKLALY IAKFLDEKVPFRKRIKFLNQVANVKHDGTVQFDVPVDMKPHTLDFGTGVVYDHAPDKE HYTEDIPEIPPPLQIVMLIVGTRGDVQPFVAIGKRLQADGHRVRLATHSNFKDFVLDA GLEFFPLGGDPKVLAGYMVKNKGFLPSVPSEIPVQRQQIREIIFSLLPACVADDLDNN VKFDVDAIIANPPAYGHTHVAEALKVPLHIFFTMPWTPTSEFPHPLSRVKQQVGYRLS YHIVDSLIWLGIRDMINEFRKKRLKLRPVTYLRGSYSSPPDVPYGYMWSPHLVPKPKD WGPIIDVVGFCFLDLASSYEPPESLVKWLEGDKKPIYIGFGSLPVQEPERMTQIIVQA LEKTGQRGIINKGWGGLGNLAEQKHFVYLLDNCPHDWLFSRCMAVVSCKCKTFSFYSG " mobile_element 31677702..31677928 /note="source:CACAO_on_S_E390_scaffold_9 1069 1323" /mobile_element_type="transposon:TIR/Mutator" gene complement(31677922..31695056) /locus_tag="TCM_025285" /note="dbxref CacaoGD:Thecc1EG025285" mRNA complement(join(31677922..31678685,31678919..31679758, 31679852..31680493,31681350..31681847,31682070..31682882, 31687050..31687775,31687884..31688345,31689666..31692242, 31694810..31695056)) /locus_tag="TCM_025285" /product="NB-ARC domain-containing disease resistance protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30074.m001382.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046053t1" /inference="similar to AA sequence:Phytozome:POPTR_0185s00200.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc164t53" gene complement(31678033..>31737928) /locus_tag="TCM_025286" /note="dbxref CacaoGD:Thecc1EG025286" mRNA complement(join(31678033..31678451,31678564..31678595, 31707201..31707321,31707434..31707558,31707792..31708631, 31708725..31709166)) /locus_tag="TCM_025286" /product="Phosphoprotein phosphatase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma18g46050.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025285t2" /inference="similar to AA sequence:Phytozome:POPTR_0019s12980.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14682t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14682t2" mRNA complement(join(31678057..31678215,31707076..31707321, 31707434..31707558,31707792..31708631, 31737815..>31737928)) /locus_tag="TCM_025286" /product="Phosphoprotein phosphatase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma18g46050.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025285t2" /inference="similar to AA sequence:Phytozome:POPTR_0013s02830.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is weak, protein is partial5; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00085t00002; inference alignment:Newbler:10:TSA:cgbaP2_g00085t00004; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14682t2" mRNA complement(join(31678132..31678204,31707062..31707321, 31707434..31707558,31707792..31708631,31708725..31708852)) /locus_tag="TCM_025286" /product="Phosphoprotein phosphatase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma18g46050.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025285t2" /inference="similar to AA sequence:Phytozome:POPTR_0013s02830.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00375t00002; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14682t2; inference alignment:Newbler:10:TSA:cgbaP2_g00085t00004" mRNA complement(join(31678567..31678685,31678919..31679758, 31679852..31680493,31681350..31681847,31682070..31682882, 31687050..31687775,31687884..31688345,31689666..31692242, 31692404..31692918)) /locus_tag="TCM_025285" /product="NB-ARC domain-containing disease resistance protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g39670.1.2" /inference="alignment:exonerate- protein:2:ricco:30074.m001382.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046053t1" /inference="similar to AA sequence:Phytozome:POPTR_0185s00200.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc164t53; alternateUTRof:Thecc1EG025285t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc164t53; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc223t32" CDS complement(join(31678647..31678685,31678919..31679758, 31679852..31680493,31681350..31681847,31682070..31682882, 31687050..31687775,31687884..31688345,31689666..31692188)) /locus_tag="TCM_025285" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG046053t1" /codon_start=1 /product="NB-ARC domain-containing disease resistance protein, putative isoform 1" /protein_id="EOY09923.1" /db_xref="Phytozome:POPTR_0185s00200.1" /db_xref="TAIR:AT4G27190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AWL3" /translation="MDFVVGVVSSIVKAAAAYTTSTIKNHFKYLCNDENQVRTLKNQV ERLKDARERVQHSVDTAKGNGEEIQHDVYTWLTTVNKKIAEEVEKVMQDEEKAKKKCF LGLCPCFWTRYKLSVDAEEEAKAVAELLKQGKFNGVSYRAVPQGTTVASVKDFEAFES RTLVFNGIMEALKEPSFSIVGVHGMGGVGKTTLVKEVARQVKEGKLFDSVVIATVTQT LDVKDIQNQVAELLGLKFEEQSRVGRAHRLRERLQKEKKILVVLDDIWERLDLEEVGI PFGNEHEGCKILLTSRHLDVLSSGMETQKNFAVGLLNENEAWDLFKKMAGDCVESCDL QPTAIKVAKKCAGLPIAIATVARALRNKRLFEWENALRELKWPSSRSKGITAGVYLPI ELSYNYLEDEEVKFPFLLCSLIGHNGSVECLLSYIMGLGSFRCINTIKEARNKVLTVV SKLKASCLLLDGYNDEQFDIHDVVRDVAISIASRDHHMFVLRDGDVQKEWPDQERMKN CSVIFLSSPNISELPDELECSHLSFFFMNNEGSVHIPANFFRGTERLKVLHLARMQFQ SLPVSINLLTNLHTLRLNRCALEDITIIGKLKKLEILSLAGSDIKALPREIAQLTRLR LLDLSHCAELKIIPPNILSNLSKLEELYLEDSFVRWDDGVLGSERRNASLEELKHLSH LTTLYVNIPNAQMIPECLFSETLDRYKIFIGDGAWDRFSVYECSRTLRFKLDTSIYLD HGVKMLLKKTEDLYLDELEGIKNVVAELNIGEDFPHLKKLHIQNGLEVQYIATEKTQF SQLQSMTLQDLPQLISFCSEDRMSSTSQQEQGNTSTKPLFNKQIVFPQLTSLRLSSIK TQRIWHSQLSETYCFCLPNLKTIIIEGCHYLQHLLLPSVARNLVHLEQFEIVDCKCLR EIIFTGEIKEQEDVICFPQLNSLVIKDLQNLLNFCSGNYNIEFPLLKVLTIEQCPKLK EFISETKMEGKHESSIQALFNKKAAVPSLERMTFSQLSNVKKMFHDELLAGSFSKLKE MTVSFCDELLALFPSNMLGVLQSLESLKVNRCDSLEQMFEVGVGGLNLKETHAVDSQL RELHIIGLPKLKHVWNKDPQGSLTFQNLRNVWVVSCKSLKNLFPASIAKDLPQLEYLT ISDCGVEEIVSAGDGLEQPVRFKFPRVYSLALTNLTELKCFYPGQHTILWPMLKKLET ACATLIKIIASEGFSIHDRREFIKGQSLFFGEEVIPKLEELRLSKMDDIAMISDVQFP ADFFHHIKVFEVGGSNFPIFLVQKLHNLENIKLSHCDFEKLVFCEGDVGEKPDAGILS RIRKLNLIYCENLRYIWKKDSELGHILSNLETLEVVGCDDSIFFGPSSASFRNLTTFE VQWCKKMIYLFPPSVVQSLVQLTKMTIQYCERMTAIVANEGDENVITFGKLKYLELHC LQSLASFCRGSYTFTFPSLEDLIVNNCTSLKVFSQGVLSTPQLQRVKESCYDNKGRWA GDLNTTIQQLYTKMAGYHDRYNLELSDTFSELMETWNRNPQEILDFKNLGRLKVCNCS SLKYIFTPSMVLSIKQLWDLQVKECPSMEVVFVEHGVEEEATTDKFTFPKLNDIKIES CSNLTSFYLGSRALKFPRLGTIRIVDCPKMSTFAASSYSRDKEKETGGDGSEKGDITA TFFSDKVVCPKLYDLDLSSINVQKIWHIQHLASSFHVHNLTRITINGCHNLKYLFPSF MVKHFMQLHSLSILDCKIMEEVILMEGLTEEEKMSSMLLIVNCDSLNKLQIVNCDSLE EIFEPQALIANQSHAITTTQSIVVETETKFVFPRVTDLRLEKLPKLKSFYPKTLATEW PSLKKMEVIECHEVEIFAAECPCFGETHTESQVKISNQQPLFWVDEITFPILEELRLK QNDTVKGTWHSQVLSTKCFKKLKVLELMCIPEKSTVLSYCFIQSLPNLEKLVLSDASF CQIFQSEELRDEERHALTLTRLSELRLSKLPELTHLWEEGFRPIPIFYNLRILEVVEC GKLKTLVPSLVSFENLTNLEVSRCHGFINLIACSTAKSLVLLERVSITDCEIIEEIIA CGGDEMEGGIVFTRLKYLQLSCLPSLASFCLGDHRFEFPVLGKMIVRECPKMKIFCQG DLSTPKLKQVQLTEEEEKGRWEGDLKTTIKQLFEEMNAGNSEVTEVTN" CDS complement(join(31678647..31678685,31678919..31679758, 31679852..31680493,31681350..31681847,31682070..31682882, 31687050..31687775,31687884..31688345,31689666..31692188)) /locus_tag="TCM_025285" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG046053t1" /codon_start=1 /product="NB-ARC domain-containing disease resistance protein, putative isoform 1" /protein_id="EOY09924.1" /db_xref="Phytozome:POPTR_0185s00200.1" /db_xref="TAIR:AT4G27190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AWL3" /translation="MDFVVGVVSSIVKAAAAYTTSTIKNHFKYLCNDENQVRTLKNQV ERLKDARERVQHSVDTAKGNGEEIQHDVYTWLTTVNKKIAEEVEKVMQDEEKAKKKCF LGLCPCFWTRYKLSVDAEEEAKAVAELLKQGKFNGVSYRAVPQGTTVASVKDFEAFES RTLVFNGIMEALKEPSFSIVGVHGMGGVGKTTLVKEVARQVKEGKLFDSVVIATVTQT LDVKDIQNQVAELLGLKFEEQSRVGRAHRLRERLQKEKKILVVLDDIWERLDLEEVGI PFGNEHEGCKILLTSRHLDVLSSGMETQKNFAVGLLNENEAWDLFKKMAGDCVESCDL QPTAIKVAKKCAGLPIAIATVARALRNKRLFEWENALRELKWPSSRSKGITAGVYLPI ELSYNYLEDEEVKFPFLLCSLIGHNGSVECLLSYIMGLGSFRCINTIKEARNKVLTVV SKLKASCLLLDGYNDEQFDIHDVVRDVAISIASRDHHMFVLRDGDVQKEWPDQERMKN CSVIFLSSPNISELPDELECSHLSFFFMNNEGSVHIPANFFRGTERLKVLHLARMQFQ SLPVSINLLTNLHTLRLNRCALEDITIIGKLKKLEILSLAGSDIKALPREIAQLTRLR LLDLSHCAELKIIPPNILSNLSKLEELYLEDSFVRWDDGVLGSERRNASLEELKHLSH LTTLYVNIPNAQMIPECLFSETLDRYKIFIGDGAWDRFSVYECSRTLRFKLDTSIYLD HGVKMLLKKTEDLYLDELEGIKNVVAELNIGEDFPHLKKLHIQNGLEVQYIATEKTQF SQLQSMTLQDLPQLISFCSEDRMSSTSQQEQGNTSTKPLFNKQIVFPQLTSLRLSSIK TQRIWHSQLSETYCFCLPNLKTIIIEGCHYLQHLLLPSVARNLVHLEQFEIVDCKCLR EIIFTGEIKEQEDVICFPQLNSLVIKDLQNLLNFCSGNYNIEFPLLKVLTIEQCPKLK EFISETKMEGKHESSIQALFNKKAAVPSLERMTFSQLSNVKKMFHDELLAGSFSKLKE MTVSFCDELLALFPSNMLGVLQSLESLKVNRCDSLEQMFEVGVGGLNLKETHAVDSQL RELHIIGLPKLKHVWNKDPQGSLTFQNLRNVWVVSCKSLKNLFPASIAKDLPQLEYLT ISDCGVEEIVSAGDGLEQPVRFKFPRVYSLALTNLTELKCFYPGQHTILWPMLKKLET ACATLIKIIASEGFSIHDRREFIKGQSLFFGEEVIPKLEELRLSKMDDIAMISDVQFP ADFFHHIKVFEVGGSNFPIFLVQKLHNLENIKLSHCDFEKLVFCEGDVGEKPDAGILS RIRKLNLIYCENLRYIWKKDSELGHILSNLETLEVVGCDDSIFFGPSSASFRNLTTFE VQWCKKMIYLFPPSVVQSLVQLTKMTIQYCERMTAIVANEGDENVITFGKLKYLELHC LQSLASFCRGSYTFTFPSLEDLIVNNCTSLKVFSQGVLSTPQLQRVKESCYDNKGRWA GDLNTTIQQLYTKMAGYHDRYNLELSDTFSELMETWNRNPQEILDFKNLGRLKVCNCS SLKYIFTPSMVLSIKQLWDLQVKECPSMEVVFVEHGVEEEATTDKFTFPKLNDIKIES CSNLTSFYLGSRALKFPRLGTIRIVDCPKMSTFAASSYSRDKEKETGGDGSEKGDITA TFFSDKVVCPKLYDLDLSSINVQKIWHIQHLASSFHVHNLTRITINGCHNLKYLFPSF MVKHFMQLHSLSILDCKIMEEVILMEGLTEEEKMSSMLLIVNCDSLNKLQIVNCDSLE EIFEPQALIANQSHAITTTQSIVVETETKFVFPRVTDLRLEKLPKLKSFYPKTLATEW PSLKKMEVIECHEVEIFAAECPCFGETHTESQVKISNQQPLFWVDEITFPILEELRLK QNDTVKGTWHSQVLSTKCFKKLKVLELMCIPEKSTVLSYCFIQSLPNLEKLVLSDASF CQIFQSEELRDEERHALTLTRLSELRLSKLPELTHLWEEGFRPIPIFYNLRILEVVEC GKLKTLVPSLVSFENLTNLEVSRCHGFINLIACSTAKSLVLLERVSITDCEIIEEIIA CGGDEMEGGIVFTRLKYLQLSCLPSLASFCLGDHRFEFPVLGKMIVRECPKMKIFCQG DLSTPKLKQVQLTEEEEKGRWEGDLKTTIKQLFEEMNAGNSEVTEVTN" mobile_element 31682986..31683024 /note="source:CACAO_M_E1785_F369_scaffold_1 1209 1247" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(31683319..31685277) /note="source:scaffold_5_CACTA_0615 176 2254" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31686280..31686577) /note="source:MITE_CACTA_25 1 313" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(31693139..31693902) /note="source:CACAO_Helitron_S_E29_scaffold_3 2477 3280" /mobile_element_type="transposon:Helitron" mobile_element complement(31694193..31695193) /note="source:CACAO_Helitron_S_E29_scaffold_3 1494 2474" /mobile_element_type="transposon:Helitron" mobile_element complement(31695395..31695502) /note="source:CACAO_Helitron_S_E29_scaffold_3 1390 1498" /mobile_element_type="transposon:Helitron" mobile_element complement(31695497..31695833) /note="source:CACAO_Helitron_S_E29_scaffold_3 875 1213" /mobile_element_type="transposon:Helitron" mobile_element complement(31695871..31696091) /note="source:CACAO_Helitron_E242_scaffold_9 1077 1309" /mobile_element_type="transposon:Helitron" mobile_element 31696224..31696627 /note="source:CACAO_Helitron_E81_scaffold_3 151 523" /mobile_element_type="transposon:Helitron" mobile_element 31696687..31696863 /note="source:CACAO_Helitron_E81_scaffold_3 512 676" /mobile_element_type="transposon:Helitron" mobile_element 31696838..31697626 /note="source:CACAO_Helitron_E81_scaffold_3 862 1683" /mobile_element_type="transposon:Helitron" mobile_element complement(31697717..31697930) /note="source:CACAO_Helitron_E2_scaffold_1 2 230" /mobile_element_type="transposon:Helitron" mobile_element 31697937..31698505 /note="source:CACAO_Helitron_E81_scaffold_3 1691 2254" /mobile_element_type="transposon:Helitron" mobile_element 31698565..31699763 /note="source:CACAO_Helitron_E81_scaffold_3 2270 3484" /mobile_element_type="transposon:Helitron" mobile_element complement(31699763..31699821) /note="source:CACAO_Helitron_S_E29_scaffold_3 560 618" /mobile_element_type="transposon:Helitron" mobile_element complement(31699815..31700086) /note="source:CACAO_Helitron_S_E29_scaffold_3 271 461" /mobile_element_type="transposon:Helitron" mobile_element 31702308..31702363 /note="source:CACAO_M_E23938_F233_scaffold_4 720 758" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(31703437..31703973) /note="source:CACAO_Helitron_S_E29_scaffold_3 274 751" /mobile_element_type="transposon:Helitron" mobile_element 31706547..31706775 /note="source:CACAO_on_S_E390_scaffold_9 1069 1323" /mobile_element_type="transposon:TIR/Mutator" CDS complement(join(31707520..31707558,31707792..31708631, 31737815..>31737928)) /locus_tag="TCM_025286" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG025285t2" /codon_start=1 /product="Phosphoprotein phosphatase isoform 2" /protein_id="EOY09926.1" /db_xref="Phytozome:POPTR_0013s02830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9REY6" /translation="IECHKVEIFAAECPCFGETHTESQVKISNQQPLFWVDEITFPIL EELRLKQNDTVKGTWHSQVLSTKCFKKLKVLELMCIPEKSTVLSYCFIQSLPNLEKLV LSDASFCQIFQSEELRDEERHALRLTRLSELRLSKLPELTRLWEKECQPIPIFCNLRI LEVLECGKLKTLVPSLVSLENLTNLEVSRCHGFINLIACSTAKSLMLLERMSITDCEI IEEIVACGGDEMEGDIVFARLKYLQLSCLPSLASFCLGDHNFEFPVLRKVIVRECPKM KIFCQGDLSTPELKQVQLTEEEEKGRWEGDLKTTIKQLFEEMNAGNSEVTEVTN" CDS complement(join(31707520..31707558,31707792..31708631, 31708725..31709096)) /locus_tag="TCM_025286" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG025285t2" /codon_start=1 /product="Phosphoprotein phosphatase isoform 1" /protein_id="EOY09925.1" /db_xref="Phytozome:POPTR_0019s12980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9REY6" /translation="MMERLEELNKLQIVNCDSLGEIFEPQALIANRSHATTTTQSIVV ETEAKFVFPQVTDLRLEKLPKLKSFYPKTLATEWPSLKKMEVIECHEVEIFAAECPCF GETHTESQVKISNQQPLFWVDEITFPILEELRLKQNDTVKGTWHSQVLSTKCFKKLKV LELMCIPEKSTVLSYCFIQSLPNLEKLVLSDASFCQIFQSEELRDEERHALRLTRLSE LRLSKLPELTRLWEKECQPIPIFCNLRILEVLECGKLKTLVPSLVSLENLTNLEVSRC HGFINLIACSTAKSLMLLERMSITDCEIIEEIVACGGDEMEGDIVFARLKYLQLSCLP SLASFCLGDHNFEFPVLRKVIVRECPKMKIFCQGDLSTPELKQVQLTEEEEKGRWEGD LKTTIKQLFEEMNAGNSEVTEVTN" CDS complement(join(31707520..31707558,31707792..31708631, 31708725..31708847)) /locus_tag="TCM_025286" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG025285t2" /codon_start=1 /product="Phosphoprotein phosphatase isoform 3" /protein_id="EOY09927.1" /db_xref="Phytozome:POPTR_0013s02830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9REY6" /translation="MEVIECHEVEIFAAECPCFGETHTESQVKISNQQPLFWVDEITF PILEELRLKQNDTVKGTWHSQVLSTKCFKKLKVLELMCIPEKSTVLSYCFIQSLPNLE KLVLSDASFCQIFQSEELRDEERHALRLTRLSELRLSKLPELTRLWEKECQPIPIFCN LRILEVLECGKLKTLVPSLVSLENLTNLEVSRCHGFINLIACSTAKSLMLLERMSITD CEIIEEIVACGGDEMEGDIVFARLKYLQLSCLPSLASFCLGDHNFEFPVLRKVIVREC PKMKIFCQGDLSTPELKQVQLTEEEEKGRWEGDLKTTIKQLFEEMNAGNSEVTEVTN" mobile_element 31711709..31711747 /note="source:CACAO_M_E1785_F369_scaffold_1 1209 1247" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(31712042..31714059) /note="source:scaffold_5_CACTA_0615 176 2254" /mobile_element_type="transposon:TIR/CACTA" gene complement(<31716106..31748209) /locus_tag="TCM_025292" /note="dbxref CacaoGD:Thecc1EG025292" mRNA complement(join(<31716106..31716637,31716748..31717212, 31718515..31718871,31748089..31748209)) /locus_tag="TCM_025292" /product="Cc-nbs-lrr resistance-like protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma18g46050.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025285t2" /inference="similar to AA sequence:Phytozome:POPTR_0005s04430.1" /note="quality class is strongpartial, express is strong, homology is paralog strong, intron is weak, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00201t00003_C2" CDS complement(join(<31716107..31716637,31716748..31717212, 31718515..31718628)) /locus_tag="TCM_025292" /note="paralog of Thecc1EG025285t2" /codon_start=1 /product="Cc-nbs-lrr resistance-like protein" /protein_id="EOY09928.1" /db_xref="Phytozome:POPTR_0005s04430.1" /translation="MTLQDLPQLISFCSEDRMSSTSQQEQGNTSTKPLFTKQIVFPQL TSLRLSSIKTQRIWHSQLSETYCFCLPNLKTIIIEGCHYLQHLLFPSVARNLVHLEQF EIVNCKCLREIIFTGEIKEEQEDVICFPQLNSLVIKDLQNLLNFCSGNYNIEFPLLKV LTIKQCPKLKEFISETKMEGKYESSIQALFNEKAAVPSLERMTLCHLRNVKKMFHDQL LAGSFGKLEEMIVECCDELLALFPSNVFGVLQSLKTLIVGRCDSLEQMFEVGVAVLNN KETHAVDSQLMKLYIYNLPKLKHVWNKDPQGSLTFQNLRKVGVRSCESLKNLFPASIA KDLPQLEYLAISRCGVEEIVSAGDGLEQPVRFEFPR" gene complement(31720420..31750603) /locus_tag="TCM_025293" /note="dbxref CacaoGD:Thecc1EG025293" mRNA complement(join(31720420..31720496,31749702..31750267, 31750474..31750522)) /locus_tag="TCM_025293" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01023551001.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046053t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s04360.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Velvet:11:TSA:cacao3v3scxLoc74t2_G2; inference alignment:Velvet:11:TSA:cacao3v3scxLoc74t2_G2" CDS complement(join(31720458..31720496,31749702..31750232)) /locus_tag="TCM_025293" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG046053t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY09929.1" /db_xref="Phytozome:POPTR_0005s04360.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C150" /translation="MEIVGSIVTKAAEYTISTIKNHVKYLCNHENQVRTLKNQVESLN DARERVQHSVDAAMGNGEEIEHDVDKWLTTVNKKISEEVEKVMQDEEKAKKKCFLGLC PSFWTRYKLSMEAEEEAKAVAELLKQGKFDKVSYRAAPQGIMVACVKGFETFESRTMV FNGIMEALKDASINIIGGCTGWVALARPR" mobile_element complement(31721988..31722751) /note="source:CACAO_Helitron_S_E29_scaffold_3 2477 3280" /mobile_element_type="transposon:Helitron" mobile_element complement(31723042..31724042) /note="source:CACAO_Helitron_S_E29_scaffold_3 1494 2474" /mobile_element_type="transposon:Helitron" mobile_element complement(31724244..31724876) /note="source:CACAO_Helitron_S_E29_scaffold_3 875 1498" /mobile_element_type="transposon:Helitron" mobile_element complement(31724919..31725129) /note="source:CACAO_Helitron_SS_E12_scaffold_1 5 215" /mobile_element_type="transposon:Helitron" mobile_element 31725366..31725640 /note="source:CACAO_Helitron_E81_scaffold_3 250 503" /mobile_element_type="transposon:Helitron" mobile_element 31725730..31726654 /note="source:CACAO_Helitron_E81_scaffold_3 512 1683" /mobile_element_type="transposon:Helitron" mobile_element complement(31726744..31726957) /note="source:CACAO_Helitron_E2_scaffold_1 2 230" /mobile_element_type="transposon:Helitron" mobile_element 31726746..31726983 /note="source:CACAO_Helitron_E242_scaffold_9 1 201" /mobile_element_type="transposon:Helitron" mobile_element 31726964..31727498 /note="source:CACAO_Helitron_E81_scaffold_3 1691 2221" /mobile_element_type="transposon:Helitron" mobile_element 31727492..31728538 /note="source:CACAO_Helitron_E81_scaffold_3 2424 3479" /mobile_element_type="transposon:Helitron" mobile_element complement(31730475..31731011) /note="source:CACAO_Helitron_S_E29_scaffold_3 274 751" /mobile_element_type="transposon:Helitron" gene 31732358..31735269 /locus_tag="TCM_025295" /note="dbxref CacaoGD:Thecc1EG025295" mRNA join(31732358..31732424,31733554..31733601, 31733679..31733828,31734773..31734972,31735057..31735269) /locus_tag="TCM_025295" /product="UDP-Glycosyltransferase superfamily protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025283t2" /inference="similar to AA sequence:ricco:30128.m009009" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14699t2" CDS join(31732416..31732424,31733554..31733601, 31733679..31733828,31734773..31734883) /locus_tag="TCM_025295" /note="dbxref ricco:30128.m009009; paralog of Thecc1EG025283t2" /codon_start=1 /product="UDP-Glycosyltransferase superfamily protein" /protein_id="EOY09931.1" /db_xref="TAIR:AT3G07020.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M8Z7" /translation="MAVVHHGGAGTTAAGLKAACPTTIVPFFGDQPFWGERVHSRGVG PAPIPVEEFSLEKLVAAIKFMLDPEVKRRAVELAEAMAGEDGVAGAVNALYKHFPGKK SKG" mobile_element 31735556..31735784 /note="source:CACAO_on_S_E390_scaffold_9 1069 1323" /mobile_element_type="transposon:TIR/Mutator" mobile_element 31744824..31744913 /note="source:CACAO_MITE100_scaffold_5 3 100" /mobile_element_type="transposon:TIR/MITE" mobile_element 31747249..31747340 /note="source:scaffold_7_CACTA_0779 11425 11515" /mobile_element_type="transposon:TIR/CACTA" mRNA complement(join(<31749645..31750286,31750474..31750603)) /locus_tag="TCM_025293" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01023551001.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046053t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s04360.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is medium, protein is partial3; similar to RNA sequence, EST 0.63 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9375t1; inference alignment:Velvet:11:TSA:cacao3v3scxLoc74t2_G2" CDS complement(<31749645..31750232) /locus_tag="TCM_025293" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG046053t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY09930.1" /db_xref="Phytozome:POPTR_0005s04360.1" /translation="MEIVGSIVTKAAEYTISTIKNHVKYLCNHENQVRTLKNQVESLN DARERVQHSVDAAMGNGEEIEHDVDKWLTTVNKKISEEVEKVMQDEEKAKKKCFLGLC PSFWTRYKLSMEAEEEAKAVAELLKQGKFDKVSYRAAPQGIMVACVKGFETFESRTMV FNGIMEALKDASINIIGVYGMGGVGKTTLVKEVAKQ" mobile_element complement(31751870..31752042) /note="source:CACAO_Helitron_S_E29_scaffold_3 2138 2331" /mobile_element_type="transposon:Helitron" mobile_element complement(31752617..31752748) /note="source:CACAO_on_E168_scaffold_10 2 112" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(31757806..31758771) /note="source:CACAO_MITE_S250_scaffold_10 11 946" /mobile_element_type="transposon:TIR/MITE" mobile_element 31760593..31761004 /note="source:scaffold_7_CACTA_0795 2863 3305" /mobile_element_type="transposon:TIR/CACTA" gene 31768723..31774293 /locus_tag="TCM_025300" /note="dbxref CacaoGD:Thecc1EG025300" mRNA join(31768723..31769052,31769280..31769786, 31770394..31770888,31771111..31771620,31771912..31772739, 31773272..31773396,31773473..31773497,31773770..31774293) /locus_tag="TCM_025300" /product="Phosphoprotein phosphatase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01026170001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026502t1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc222t36; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc222t36" mRNA join(31768723..31769052,31769280..31769786, 31770394..31770888,31771111..31771620,31771912..31772739, 31773272..31773396,31773473..31773607) /locus_tag="TCM_025300" /product="Phosphoprotein phosphatase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g07100.1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01026170001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026502t1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc222t39; alternateUTRof:Thecc1EG025300t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc222t36" CDS join(31768729..31769052,31769280..31769786, 31770394..31770888,31771111..31771620,31771912..31772739, 31773272..31773352) /locus_tag="TCM_025300" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG026502t1" /codon_start=1 /product="Phosphoprotein phosphatase isoform 1" /protein_id="EOY09932.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9REY6" /translation="MRIRECLSMKEIVGDPGDEETYDIIFSNLKCLELQHLPNLTSFC SGNHTFEFPSLEQIIVSQCPELKVFCHGVLNVPLLRRVQITNEDDKGPWVGDLNSTIQ QLYTEQVGFQGMEYCVLSEFSKSMVLWNENLPGVLDFKNLKSLEVYGCNRLKYIFTFS MALDLQQLKEIKVKDCLMMEHIITNDGEEAATLTIMFPWLQFVTLESCLNLTSFYSGI NTLECPSLKEIILVDCPKIFAFASTISREQGPEKFDGGYMKRNGKGIPNDSVAPFFSD KVLCPHLEYLRLCSINIQKIWHDQLQVTSSNLQNLKTLIVEGCHSLKYLFLPTMGKTF LQLRDLYIINCQNVEEVIILEGLTEKERTSQMFFPKLELLELRGLPKLVRFCHGNYFV FPFLRTLWIADCPELNTLISNSLIGGQPQMAQKEEGNKSEVDALSLFNEKVEFPRIKE LRIAGMGNWRKIWQDKLTVDSFCELNFLLVKNCERLLNIFPFDMMERLDKLKELHIWN CASLEEIIGAHELNSYESHVINATQSTIMFVLPKVTFLGLSTLPKLKCFYSKIHTTEW PSLIELQVIGCSKVEIFAGEYLNLQEVQRESQLEISTQQPLFWVSKKTFPNLEVLILE QNDIMKEIWLGQLPTQYFSKLRGLELISFPFNAVSVPDCFIQSLPNLAKLVVSEASFN EIFQCEGREGVGEHAKALALLSELRLSELPELTCLWKEETPLGDAFYNLRTLEVMGCG KLKNLVPSSVYFENLTTLEVSKCHGFITLIALPTAKSMVHLARMSITDCQMMEEVVAC ASEVKDGIIFSQLKYLELGNLPSLSSFCSGKCSFLFPSLENVTVRNCSKMKIFSQGEL STPNMQRVQFAEDEERWDGNLNTTMEQIFIQMNVSNSKEEEGCSSHPKFNQDNASMFL " CDS join(31768729..31769052,31769280..31769786, 31770394..31770888,31771111..31771620,31771912..31772739, 31773272..31773352) /locus_tag="TCM_025300" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG026502t1" /codon_start=1 /product="Phosphoprotein phosphatase isoform 1" /protein_id="EOY09933.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9REY6" /translation="MRIRECLSMKEIVGDPGDEETYDIIFSNLKCLELQHLPNLTSFC SGNHTFEFPSLEQIIVSQCPELKVFCHGVLNVPLLRRVQITNEDDKGPWVGDLNSTIQ QLYTEQVGFQGMEYCVLSEFSKSMVLWNENLPGVLDFKNLKSLEVYGCNRLKYIFTFS MALDLQQLKEIKVKDCLMMEHIITNDGEEAATLTIMFPWLQFVTLESCLNLTSFYSGI NTLECPSLKEIILVDCPKIFAFASTISREQGPEKFDGGYMKRNGKGIPNDSVAPFFSD KVLCPHLEYLRLCSINIQKIWHDQLQVTSSNLQNLKTLIVEGCHSLKYLFLPTMGKTF LQLRDLYIINCQNVEEVIILEGLTEKERTSQMFFPKLELLELRGLPKLVRFCHGNYFV FPFLRTLWIADCPELNTLISNSLIGGQPQMAQKEEGNKSEVDALSLFNEKVEFPRIKE LRIAGMGNWRKIWQDKLTVDSFCELNFLLVKNCERLLNIFPFDMMERLDKLKELHIWN CASLEEIIGAHELNSYESHVINATQSTIMFVLPKVTFLGLSTLPKLKCFYSKIHTTEW PSLIELQVIGCSKVEIFAGEYLNLQEVQRESQLEISTQQPLFWVSKKTFPNLEVLILE QNDIMKEIWLGQLPTQYFSKLRGLELISFPFNAVSVPDCFIQSLPNLAKLVVSEASFN EIFQCEGREGVGEHAKALALLSELRLSELPELTCLWKEETPLGDAFYNLRTLEVMGCG KLKNLVPSSVYFENLTTLEVSKCHGFITLIALPTAKSMVHLARMSITDCQMMEEVVAC ASEVKDGIIFSQLKYLELGNLPSLSSFCSGKCSFLFPSLENVTVRNCSKMKIFSQGEL STPNMQRVQFAEDEERWDGNLNTTMEQIFIQMNVSNSKEEEGCSSHPKFNQDNASMFL " gene complement(31775395..31778141) /locus_tag="TCM_025302" /note="dbxref CacaoGD:Thecc1EG025302" mRNA complement(join(31775395..31775669,31775706..31775851, 31776054..31776893,31776986..31777510,31777698..31778141)) /locus_tag="TCM_025302" /product="Phosphoprotein phosphatase" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400014643.6" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025285t2" /inference="similar to AA sequence:Phytozome:POPTR_0013s02830.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.38 coverage" CDS complement(join(31775813..31775851,31776054..31776893, 31776986..31777510,31777698..31778030)) /locus_tag="TCM_025302" /note="paralog of Thecc1EG025285t2" /codon_start=1 /product="Phosphoprotein phosphatase" /protein_id="EOY09934.1" /db_xref="Phytozome:POPTR_0013s02830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HVH2" /translation="MVKHFAQLHHLSILDCKIMEEVILMEGLTEEERMSKMLFPTLDY LMLKDLPKLRRFCYETDNEFPLLRTLNLINCPILKTFTSNSVIDEVGDEPQIDQNAQG NNSALFNEKVVFPGLKTLTIKAMRSCRRIWQDQLTVNSFCKLNNIWVEGCGALLNTFP FNMMERLEELNKLQIVNCDSLEEIFEPQALIANQSHAITATQSIVVETETKFVFPKMT YLRLDKLPKLKSFYSKTHVTEWPSLKKMEVIECHKVEIFASKYPYFEETDAASQVEIS NQQPLFQVNEITFPILEELSLKQDDIVKGTWHGQVLSTKCFRKLKVLQLISIPEKSTA LPYCFIQSLPNLEKLVLSDVSFCQIFWSEELSDEERHASSLTRLSELRLSKLPELTNL WKEGFQPIPAFCNLRILQVLECDKLKTLVPSLVSFKNLKNLEVSRCYGFINLITCSTA KSLMVLERMSITDCEMIEEIIACGGDEMQGGIVFTRLKYLQLSCLPSLASFCLGDHNF EFPVLQKVIVRECPKMKIFCQGDLSTPKLKQVQLTEDEEKVRWENDLKTTVKQMFEEM NVQNSEVAEVIV" gene complement(31782420..31790567) /locus_tag="TCM_025304" /note="dbxref CacaoGD:Thecc1EG025304" mRNA complement(join(31782420..31783033,31783140..31783601, 31786091..31788667,31788822..31789147,31790414..31790567)) /locus_tag="TCM_025304" /product="NB-ARC domain-containing disease resistance protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s04360.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046053t1" /inference="similar to AA sequence:Phytozome:POPTR_0185s00210.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01148t00001" CDS complement(join(31782458..31783033,31783140..31783601, 31786091..31788616)) /locus_tag="TCM_025304" /note="paralog of Thecc1EG046053t1" /codon_start=1 /product="NB-ARC domain-containing disease resistance protein, putative" /protein_id="EOY09935.1" /db_xref="Phytozome:POPTR_0185s00210.1" /db_xref="TAIR:AT4G27190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H475" /translation="MEIVVGVVSSIVTTAAKYTISPIKNHFKYLCNHENQVRSLKNQV ESLKDARQRVQHSVDAAMRNGEEIEHDVDRWLTTVNKKIAEEVEKVMQNEDKAKKKCF LGLCPGFWTRYMLSMEAEEEAKAVAELLEQGKFDSVSYRGGPQGTMVASVKGFEAFES RTLVLNGIIEALKDASFGVLGVHGMGGVGKTTLVKEVARQVKEGKLFDSVVIAAVTQT LDVKDIQNQVAEQLGLKFEEQSRVGRALRLRERLQKEKKILVVLDDIWERLDLEEVGI PFGNEHEGCKILLTSRHLDVLSSGMETQKNFVVGLLNEKEAWDLFKKMAGDCVESCDL QPTAIEIAKKCAGLPIAIATVARALRNKRLFEWENALRELKRPSSRSFTGLTADVYSA LELSYSCLEDEEVKFTFLLCSLIGHNGFVQNLLQCVMGLGSFRGVNTIKEARNKVLTV VSKLKSSCLLLDSYNDERFDIHDVVRDVAISIASRDHHMFVLRDGDVLKEWPDQETMK TCSVIFLSSPNISELPDELECSHLSFLFMNNDGSVNIPANFFRRTERLKVLHLAGMQF QSLPASINLLTNLHMLRLNRCALEDITIIGKLKKLEILNLARSDIKALPREIAQLTRL RLLDLRHCTELKIIPPNILSNLSKLEELYLEDSFVQWEDEALGSERRNVSLEELKHLS HLTTLYVDIPNAQIIPECLFSETLDRYKIFIGTGAWERFAKYKCSRTLRFKLDTSIHL DHGVKILLKKTEDLYLDQLKGIKNVVAELNNGEDFPHLKKLHIQNGLEVQYIATENTQ FSQLQSMTLQDLPRLIGFSSEEKTSSTSQKEQRNTSTKPLFNKQIVFPQLKSLRLSSI KTERIWHNQLSETYCYCLPNLKSFIIEDCDHLQHLLLPSVARSLIHLEHFEIVDCKCL RDIIFTEEITEEQEDVICFPRLNSLKIKYLSNLIKFGSGNYNIEFPSLKVLEIGNCPI QEFISESKMEGKYESSIQALFNEKAAFPSLERMRLSSLRNVKMIFHDQLPAGPLDSQL RELDIKNLPQLKHVWNKDHQGSLTYQNLRKVRVWHCGSLKNLFPASIAKDLPQLEDLT IICCGVEEIVSLGEGLEQPVRFKFPRVSSLVLTSLEELKCFYPGQHTIVWPMLKKLKT DCSTFIKIVASERPSIQEMNENDRRESTEGQPLFLGEEVLF" mobile_element 31784960..31785252 /note="source:MITE_Unknow_2_24 1 292" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(31789141..31789510) /note="source:scaffold_2_CACTA_0244 14318 14708" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31789984..31790411) /note="source:scaffold_2_CACTA_0244 13472 13904" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31791552..31793724) /note="source:CACAO_Mutator_E1998_scaffold_9 7939 10206" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(31793722..31795114) /note="source:CACAO_on_S_E176_scaffold_5 4976 6380" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(31795033..31795299) /note="source:scaffold_4_CACTA_0511 13020 13320" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31796413..31796481 /note="source:CACAO_M_S_E32672_F265_scaffold_4 1270 1337" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(31796481..31797762) /note="source:scaffold_5_CACTA_0584 8189 9500" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31797908..31798446) /note="source:scaffold_1_CACTA_0011 11856 12371" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31797962..31799515) /note="source:INTACT52F_F339_scaffold_1-int 9367 10924" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 31798700..31805313 /note="source:INTACT60_F127_scaffold_9-int 2302 8533" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 31805414..31806505 /note="source:INTACT60_F127_scaffold_9-int 8545 9636" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(31806733..31807242) /note="source:INTACT1330F_F382_scaffold_8-int 5703 6213" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(31807477..31810751) /note="source:INTACT1330F_F382_scaffold_8-int 2187 5468" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(31810979..31811627) /note="source:CACAO_on_E459_scaffold_2 1790 2434" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(31811745..31812118) /note="source:INTACT52F_F339_scaffold_1-int 1 354" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 31812119..31812171 /note="source:CACAO_M_E42931_F9_scaffold_5 1096 1148" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 31812119..31812168 /note="source:INTACT197_F50_scaffold_5-int 3429 3477" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 31812242..31812511 /note="source:scaffold_10_CACTA_0141 158 433" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31812272..31813153) /note="source:CACAO_on_S_E176_scaffold_5 3009 3877" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(31818564..31822714) /note="source:scaffold_1_CACTA_0009 9695 13824" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31822840..31823001) /note="source:CACAO_Mutator_E1410_scaffold_6 5839 5987" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(31823274..31825364) /note="source:scaffold_1_CACTA_0009 4526 6603" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31825485..31826622) /note="source:scaffold_1_CACTA_0009 1631 3413" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31826851..31826915) /note="source:CACAO_Helitron_S_E29_scaffold_3 2736 2800" /mobile_element_type="transposon:Helitron" mobile_element complement(31826994..31827123) /note="source:CACAO_Helitron_S_E29_scaffold_3 1513 1635" /mobile_element_type="transposon:Helitron" mobile_element complement(31832945..31833010) /note="source:INTACT477_F225_scaffold_9-int 4161 4234" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(31834033..31834162) /note="source:CACAO_Helitron_S_E29_scaffold_3 2322 2456" /mobile_element_type="transposon:Helitron" gene complement(31836453..31846943) /locus_tag="TCM_025309" /note="dbxref CacaoGD:Thecc1EG025309" mRNA complement(join(31836453..31836766,31837750..31837781, 31837976..31838138,31838991..31839056,31839247..31839307, 31841052..31841183,31841781..31841863,31841958..31842038, 31842156..31842188,31843072..31843173,31843248..31843343, 31844128..31844289,31844409..31844600,31845033..31845143, 31845243..31845314,31845421..31845625,31845978..31846143, 31846592..31846943)) /locus_tag="TCM_025309" /product="Cytochrome P450, family 97, subfamily A, polypeptide 3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma18g47500.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022349t1" /inference="similar to AA sequence:ricco:30128.m009010" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7851t2" mRNA complement(join(31836793..31837040,31837987..31838138, 31838991..31839056,31839247..31839307,31841052..31841183, 31841781..31841863,31841958..31842038,31842156..31842188, 31843072..31843173,31843248..31843343,31844128..31844289, 31844409..31844600,31845033..31845143,31845243..31845314, 31845421..31845625,31845978..31846143, 31846239..>31846297)) /locus_tag="TCM_025309" /product="Cytochrome P450, family 97, subfamily A, polypeptide 3 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma18g47500.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022349t1" /inference="similar to AA sequence:ricco:30128.m009010" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01645t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7851t2; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc890t11" CDS complement(join(31837025..31837040,31837987..31838138, 31838991..31839056,31839247..31839307,31841052..31841183, 31841781..31841863,31841958..31842038,31842156..31842188, 31843072..31843173,31843248..31843343,31844128..31844289, 31844409..31844600,31845033..31845143,31845243..31845314, 31845421..31845625,31845978..31846143, 31846239..>31846296)) /locus_tag="TCM_025309" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30128.m009010; paralog of Thecc1EG022349t1" /codon_start=1 /product="Cytochrome P450, family 97, subfamily A, polypeptide 3 isoform 3" /protein_id="EOY09938.1" /db_xref="TAIR:AT1G31800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93VK5" /translation="PLQLHLTKPKSAAFPLKHYGTSKFGIVKCGSSSNGREPDSVDNG VKSIELLREEKRRAELSARIASGEFTVQKSGFPSLLRNGLSKLGVPIEVLEFLFKCGD YPKIPEAKGTIKAIRSEAFFLPLYELYLTYGGMFRLTIGPKSFLIVSDPSIAKHILRD NSKSYSKGVLAEILEFVMGKGLIPADAEIWRVRRRAIVPALHQKYVAAMISLFGQATE RLCQKLDDAATDGEDVEMESLFSHLTLDIIGKAVFNYDFDSLTNDTGIVEAVYTVLRE AEDRSVSPIPTWEIPIWKDISPQQRKVAEALKLINDVLDDLIATCKRMVEEEELQFHE EYMNEQDPSILHFLLASGDDVSSKQLRDDLMTLLIAGHETSAAVLTWTFYLLSKEPTV VSKLQDEVDSVLGDRFPTIGDMKKLKYTTRVINESLRLYPQPPVLIRRSLEDDVLGKY PIKRGEDIFISVWNLHHSPSLWEDPEKFNPERWPLDGPNPNETNQNFCYLPFGGGPRK CVGDMFASFENVVAVAMLVRRFNFQMALGAPPVEMTTGATIHTTGGLKMTVTRRIQPP IIPELDMQGLKMEASARNSEEETQLNRIN" mRNA complement(join(31837540..31837781,31837976..31838138, 31838991..31839056,31839247..31839307,31841052..31841183, 31841781..31841863,31841958..31842038,31842156..31842188, 31843072..31843173,31843248..31843343,31844128..31844289, 31844409..31844600,31845033..31845143,31845243..31845314, 31845421..31845625,31845978..31846143,31846239..31846471)) /locus_tag="TCM_025309" /product="Cytochrome P450 97B2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma18g47500.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022349t1" /inference="similar to AA sequence:ricco:30128.m009010" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7851t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7851t2; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc890t11" CDS complement(join(31837771..31837781,31837976..31838138, 31838991..31839056,31839247..31839307,31841052..31841183, 31841781..31841863,31841958..31842038,31842156..31842188, 31843072..31843173,31843248..31843343,31844128..31844289, 31844409..31844600,31845033..31845143,31845243..31845314, 31845421..31845625,31845978..31846143,31846592..31846613)) /locus_tag="TCM_025309" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30128.m009010; paralog of Thecc1EG022349t1" /codon_start=1 /product="Cytochrome P450, family 97, subfamily A, polypeptide 3 isoform 1" /protein_id="EOY09936.1" /db_xref="TAIR:AT1G31800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93VK5" /translation="MADGLENGTSKFGIVKCGSSSNGREPDSVDNGVKSIELLREEKR RAELSARIASGEFTVQKSGFPSLLRNGLSKLGVPIEVLEFLFKCGDYPKIPEAKGTIK AIRSEAFFLPLYELYLTYGGMFRLTIGPKSFLIVSDPSIAKHILRDNSKSYSKGVLAE ILEFVMGKGLIPADAEIWRVRRRAIVPALHQKYVAAMISLFGQATERLCQKLDDAATD GEDVEMESLFSHLTLDIIGKAVFNYDFDSLTNDTGIVEAVYTVLREAEDRSVSPIPTW EIPIWKDISPQQRKVAEALKLINDVLDDLIATCKRMVEEEELQFHEEYMNEQDPSILH FLLASGDDVSSKQLRDDLMTLLIAGHETSAAVLTWTFYLLSKEPTVVSKLQDEVDSVL GDRFPTIGDMKKLKYTTRVINESLRLYPQPPVLIRRSLEDDVLGKYPIKRGEDIFISV WNLHHSPSLWEDPEKFNPERWPLDGPNPNETNQNFCYLPFGGGPRKCVGDMFASFENV VAVAMLVRRFNFQMALGAPPVEMTTGATIHTTGGLKMTVTRRIQPPIIPELDMQGLKM EASARNSEEETQLGEKGKL" CDS complement(join(31837771..31837781,31837976..31838138, 31838991..31839056,31839247..31839307,31841052..31841183, 31841781..31841863,31841958..31842038,31842156..31842188, 31843072..31843173,31843248..31843343,31844128..31844289, 31844409..31844600,31845033..31845143,31845243..31845314, 31845421..31845625,31845978..31846143,31846239..31846320)) /locus_tag="TCM_025309" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30128.m009010; paralog of Thecc1EG022349t1" /codon_start=1 /product="Cytochrome P450 97B2 isoform 2" /protein_id="EOY09937.1" /db_xref="TAIR:AT1G31800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93VK5" /translation="MAATPAYPPLQLHLTKPKSAAFPLKHYGTSKFGIVKCGSSSNGR EPDSVDNGVKSIELLREEKRRAELSARIASGEFTVQKSGFPSLLRNGLSKLGVPIEVL EFLFKCGDYPKIPEAKGTIKAIRSEAFFLPLYELYLTYGGMFRLTIGPKSFLIVSDPS IAKHILRDNSKSYSKGVLAEILEFVMGKGLIPADAEIWRVRRRAIVPALHQKYVAAMI SLFGQATERLCQKLDDAATDGEDVEMESLFSHLTLDIIGKAVFNYDFDSLTNDTGIVE AVYTVLREAEDRSVSPIPTWEIPIWKDISPQQRKVAEALKLINDVLDDLIATCKRMVE EEELQFHEEYMNEQDPSILHFLLASGDDVSSKQLRDDLMTLLIAGHETSAAVLTWTFY LLSKEPTVVSKLQDEVDSVLGDRFPTIGDMKKLKYTTRVINESLRLYPQPPVLIRRSL EDDVLGKYPIKRGEDIFISVWNLHHSPSLWEDPEKFNPERWPLDGPNPNETNQNFCYL PFGGGPRKCVGDMFASFENVVAVAMLVRRFNFQMALGAPPVEMTTGATIHTTGGLKMT VTRRIQPPIIPELDMQGLKMEASARNSEEETQLGEKGKL" gene complement(31846847..31863230) /locus_tag="TCM_025311" /note="dbxref CacaoGD:Thecc1EG025311" mRNA complement(join(31846847..31846904,31848074..31848294, 31848412..31848512,31848813..31849126,31849293..31849367, 31849502..31849595,31849828..31850093,31850262..31850336, 31850493..31850607,31851085..31851191,31851532..31851646, 31851732..31851853,31852058..31852157,31858721..31859106, 31859308..31859382,31859544..31859658,31859949..31860190, 31860359..31860433,31860596..31860710,31861097..31861188, 31861325..31861436,31861600..31861712,31861986..31862338, 31862803..31863230)) /locus_tag="TCM_025311" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025315t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is weak, protein is complete" CDS complement(join(31848230..31848294,31848412..31848512, 31848813..31849126,31849293..31849367,31849502..31849595, 31849828..31850093,31850262..31850336,31850493..31850607, 31851085..31851191,31851532..31851646,31851732..31851853, 31852058..31852157,31858721..31859106,31859308..31859382, 31859544..31859658,31859949..31860190,31860359..31860433, 31860596..31860710,31861097..31861188,31861325..31861436, 31861600..31861712,31861986..31862150)) /locus_tag="TCM_025311" /note="paralog of Thecc1EG025315t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09939.1" /translation="MLLANFFSNNYLSILITFDDYRNFKSVSYFIMSTEDDTAAAALV EEALTEDADSQAKKPPHRESSQSLSHEQDINVKDHTSTESVFHAEHMFLPPSTETPNQ GSTLSSGHSIGNLNNSLEASGDYLLPQETQQENWISGSSLAYTDWINWEPSPHVATEL GSQRFGFQALLNQVIASKNSHLYGDTPSQPQPAKMPIHQGVGSCTKGESVPIQFDSIV PTNPDKRKATGQDSTPPPPKLPFINLMTLGQGNQGRNNLTNQDPNTPGNEGLKSPENR GLTTFGNQDPNTLGNQGQNNSVPLASGSRSQGYGFQASLNQVMTSNYSHLNDDTPHQF QRAKLPIRRGVRSNTEGVSSPIQFDGIVPNNPNKRKMTWRDSTPPPPKLRFINWMLPR QGNQGKSSLGNQDQNSPGNQDPNTLDNPSPKSPETQSPKSPGSQSPKSFENQGQNIPV NQDPKTPENQGLNTLGNQDQKSPGNQDRNTPGNVGPNNSVPTTSGSRNFKSISYFIMS TEDNIAAAASAEEAVKLKADSQEDMEGKADKAGADESNKSGVNQPDGNQHLNQFPASI YMAERNEEIFGTSPATSPRIHSLLTSPPLQQAGTLPSIYNSIKTQQGNWMSGSSLAST NWINCQPSSQITKPEPATALGSQGFGFQVLLNQAMASNNSHLYDDIPRQFQQAKLPIR HGVGSSTKGKSSPIQFDGIVPSNPDKRKMTWQDSTPSPPKLPLINLMLLGQGNQSQIN PDNQGPKTPGNQGRVTSGNQGSNTLDNQGVKNLENQSRNTPSNQCRSNSDPTTFGSRS QGLGFQIFLNQLMPLNGTPQLQPAKLPIRREVGSSTKGISSPIQFDGIVPTNPNKRKM TRQDSTPPPPKIPFINWMLPGQGNQDENSSGNQSQNTHGNQGPKSLGNQESNTFDNQG SKSPRNQGSNTLGNQGQKSLDNEGRNTPNNEGQNKSVPTASGSRSKAIPNKVYDPSYE AMGLPVDPHLRMFLARCESAENKDSDKKDDGGSKTMARKT" mobile_element complement(31849638..31849725) /note="source:scaffold_9_CACTA_0929 9986 10073" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31849647..31849758) /note="source:CACAO_M_S_E52027_F3_scaffold_5 3857 3952" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(31852316..31852407) /note="source:CACAO_Again_on_E160_scaffold_6 3551 3642" /mobile_element_type="transposon:TIR/hAT" mobile_element 31853532..31853585 /note="source:CACAO_M_E49559_F88_scaffold_7 7609 7664" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 31853553..31853601 /note="source:CACAO_M_S_E18487_F233_scaffold_3 1221 1269" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(31853725..31853774) /note="source:CACAO_M_S_E88793_F13_scaffold_7 8620 8667" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 31853755..31857782 /note="source:CACAO_M_E34351_F2_scaffold_4 59 4124" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 31859734..31859841 /note="source:CACAO_M_S_E14849_F156_scaffold_2 683 790" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 31859768..31859851 /note="source:scaffold_6_CACTA_0703 3481 3564" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31859852..31859869) /note="source:CACAO_M_S_E31635_F14_scaffold_3 3171 3218" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(31865690..31866302) /note="source:INTACT164_F159_scaffold_7-int 685 1289" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 31866243..31866839 /note="source:CACAO_M_S_E5210_F12_scaffold_1 7910 8469" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(31867624..31869058) /note="source:CACAO_M_S_E16721_F36_scaffold_2 17781 19187" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(31869053..31869488) /note="source:INTACT164_F159_scaffold_7-int 10079 10509" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 31872754..31875357 /locus_tag="TCM_025313" /note="dbxref CacaoGD:Thecc1EG025313" mRNA join(31872754..31872850,31873596..31873759, 31873875..31874068,31874621..31874920,31875047..31875357) /locus_tag="TCM_025313" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(31873662..31873759,31873875..31874068, 31874621..31874920,31875047..31875117) /locus_tag="TCM_025313" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09940.1" /translation="MESIKFSGFQILLGEIKCQRFGDVFLNSHPMISLFSIVVDNEFK VVDLWNNGTWFIPFRRSLYSWEKDSYNEILRKLENVFLSIGKFDKLIWVHDSHEPSIS FVGRAPLHHRIGISRQPPNDGEFKFNIDGSVWGKPSIASCGGVLQNSASHVVGIFFGP LGFHDSNYAELYAILQALRFYASSPFKDSHLIIESVASNSFADNLAKFGVEKNSMFCA RW" mobile_element 31875652..31876159 /note="source:CACAO_Again_on_E139_scaffold_5 1 508" /mobile_element_type="transposon:TIR/hAT" mobile_element 31876240..31876774 /note="source:scaffold_4_CACTA_0511 12875 13393" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31876572..31876799) /note="source:CACAO_on_E33_A_scaffold_3 920 1143" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 31876780..31877135 /note="source:scaffold_4_CACTA_0511 13586 13930" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31877049..31877450 /note="source:CACAO_on_E26_scaffold_4 23 442" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(31877153..31877587) /note="source:CACAO_Again_on_S_E124_scaffold_3 2729 3059" /mobile_element_type="transposon:TIR/hAT" gene 31877320..31879098 /locus_tag="TCM_025314" /note="dbxref CacaoGD:Thecc1EG025314" mRNA join(31877320..31877417,31877568..31877610, 31878766..31879098) /locus_tag="TCM_025314" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.47 coverage" CDS join(31877350..31877417,31877568..31877610, 31878766..31878924) /locus_tag="TCM_025314" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09941.1" /translation="MSLSTWIRKDENHSSPLYEIKKRFYLLLVRDGLITSKITHTLRT TNSMADTLAKAGVERQQDLRMVDYEQLLRPFCFLSYWKRWRWREI" mobile_element complement(31877587..31878218) /note="source:CACAO_Again_on_E175_scaffold_7 117 740" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(31878431..31878569) /note="source:scaffold_5_CACTA_0614 2177 2321" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31878549..31878656) /note="source:CACAO_hAT_E2547_scaffold_5 2 130" /mobile_element_type="transposon:TIR/hAT" mobile_element 31878570..31878613 /note="source:MITE_hAT_11 405 583" /mobile_element_type="transposon:TIR/MITE" gene complement(31880679..31885823) /locus_tag="TCM_025315" /note="dbxref CacaoGD:Thecc1EG025315" mRNA complement(join(31880679..31881118,31881239..31881339, 31881691..31882079,31882280..31882354,31882501..31882615, 31883092..31883381,31883551..31883625,31883787..31883901, 31884294..31884385,31884522..31884633,31884797..31884909, 31885185..31885284,31885692..31885823)) /locus_tag="TCM_025315" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025311t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.17 coverage" CDS complement(join(31881054..31881118,31881239..31881339, 31881691..31882079,31882280..31882354,31882501..31882615, 31883092..31883381,31883551..31883625,31883787..31883901, 31884294..31884385,31884522..31884633,31884797..31884909, 31885185..31885256)) /locus_tag="TCM_025315" /note="paralog of Thecc1EG025311t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09942.1" /translation="MSTQDDTAAAALVEEALTEDADSQAKKRPRRESSQSLSHEQDIN VNDHTPTESVFHAEHMFLPPSTETPNQGSTLSSGHSIGNLNNSLEASNDYLLPQETQQ ENWMSGSSLAYTDWINWEPSPQIATELGSQRFGFQALLNQVIASNNSHLYGDIPCQPQ QAKMPIQQGVGSSTKGESSPIQFDGIVPANPEKRKITWQDSTPPPPKLPFINLMMLGQ GSQGQKSTGNQGRNRRNNQDSDAPGNQGPKSLENQGLTTFDSQDPNSPNYQGSNTLGN QGRTNRVPLASGSRSQEFGFQALLNQVMTSNYSHMNDDTPHHLQRAKLPIQRGVESST KGVSSPIQFDGIVPNNLNKRKMTWRDSTPPPPKLPFIDWMLQGQGNRGKNSPGNQDGN SSDNQDPNTLDNPDSKSPENQVLSDPGNQSPKSFENQDLNTTPNNQDPKNPENQDQHT QGNQDQKSPGSQGRNTPGNAGQNNSVPTSSGSRSKAILNSVYDPSYEAMGLPIDPHLR CFLLRHKNAENKDSDKKDDGGLETMIRKT" mobile_element complement(31882671..31882781) /note="source:scaffold_5_CACTA_0584 1923 2030" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31882700..31882795) /note="source:CACAO_Again_on_E207_scaffold_9 1018 1109" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(31882917..31883012) /note="source:CACAO_M_S_E52027_F3_scaffold_5 3856 3947" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 31887265..31887354 /note="source:scaffold_8_CACTA_0863 5128 5217" /mobile_element_type="transposon:TIR/CACTA" gene complement(31888606..31889943) /locus_tag="TCM_025316" /note="dbxref CacaoGD:Thecc1EG025316" mRNA complement(join(31888606..31888739,31888860..31888960, 31889296..31889767,31889882..31889943)) /locus_tag="TCM_025316" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025315t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.34 coverage" CDS complement(join(31888675..31888739,31888860..31888960, 31889296..31889621)) /locus_tag="TCM_025316" /note="paralog of Thecc1EG025315t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09943.1" /translation="MLQGQGNQGKNSLGNQDRNSSDNQDPYTLHNPDPKSPENQVPNN PGNQSPKSFENQGLYTPYNHDPKNLENQGRNTLGNQAQKSPGNQGRNTLGNEGQNNSV STASCSRSKAIPNSVYDPSYEAMGLPIDPHLRCFLLRCENAENKDSDKKDDGGSKTMA RKT" mobile_element 31890260..31890366 /note="source:scaffold_5_CACTA_0584 1926 2033" /mobile_element_type="transposon:TIR/CACTA" gene complement(31890389..31893143) /locus_tag="TCM_025317" /note="dbxref CacaoGD:Thecc1EG025317" mRNA complement(join(31890389..31890756,31890926..31891000, 31891163..31891277,31891765..31891856,31891993..31892104, 31892268..31892380,31892671..31892761,31892890..31893143)) /locus_tag="TCM_025317" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025315t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(join(31890430..31890756,31890926..31891000, 31891163..31891277,31891765..31891856,31891993..31892104, 31892268..31892380,31892671..31892742)) /locus_tag="TCM_025317" /note="paralog of Thecc1EG025315t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09944.1" /translation="MSTEDDTSAAAFVEEALTEDADAQAEKPARRENFQSLSHEQDIN VNDHTSTESVFHAEHMFLHPSMETPNHGSTLSSGHSIGNLNNSVEASNDYLLPPETQE GNWMSGAYLAYTDCINWHLSSQKATELGSQRFEFQALSNQVIASNNSHLYDDIPCLPQ LAKMPIQQGVGSSTEGESSTIQFDGIVPTNHDKRKMTWQDSTPPPPKLPFINLMMLGQ GNEGQNNFGNQGQNSLNNQGPNTPGNQGSKSVENQGLTTSSNQDPKSPDNQGSNTPGN QCRINSVPIATGSRYYIIYERVILS" mobile_element complement(31895673..31895910) /note="source:CACAO_M_E57346_F74_scaffold_9 2558 2778" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(31896626..31896693) /note="source:INTACT666_F293_scaffold_9-int 258 327" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(31896832..31896869) /note="source:INTACT345_F202_scaffold_1-int 11664 11701" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(31897576..31897627) /note="source:scaffold_9_CACTA_0946 1824 1874" /mobile_element_type="transposon:TIR/CACTA" mobile_element 31897593..31897722 /note="source:CACAO_M_S_E16386_F9_scaffold_2 2004 2142" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(31897628..31899564) /note="source:scaffold_9_CACTA_0946 1 1843" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31901204..31901651) /note="source:CACAO_M_E57461_F236_scaffold_9 1209 1658" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(31904314..31905930) /note="source:INTACT694_F17_scaffold_5-int 1514 3131" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(31906740..31908273) /locus_tag="TCM_025319" /note="dbxref CacaoGD:Thecc1EG025319" mRNA complement(join(31906740..31907089,31907994..31908273)) /locus_tag="TCM_025319" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.89 coverage" CDS complement(join(31906987..31907089,31907994..31908169)) /locus_tag="TCM_025319" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09945.1" /translation="MAHPITVHISNLYHAVEAVRPYLNAINLMGCGGGAAPSLMGCLP GLVNESFYTMYGILKWIEEYISMAKVLALVNESPTKEFAMKKKRIKVR" mobile_element complement(31907579..31907690) /note="source:scaffold_3_CACTA_0396 885 1001" /mobile_element_type="transposon:TIR/CACTA" gene complement(31908441..31914773) /locus_tag="TCM_025320" /note="dbxref CacaoGD:Thecc1EG025320" mRNA complement(join(31908441..31910343,31910511..31910585, 31910734..31910848,31911005..31911111,31911241..31911406, 31911570..31911694,31911918..31912032,31912199..31912416, 31912566..31912640,31912764..31912878,31913386..31913492, 31913629..31913740,31913904..31914028,31914257..31914773)) /locus_tag="TCM_025320" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete" CDS complement(join(31909264..31910343,31910511..31910585, 31910734..31910848,31911005..31911111,31911241..31911406, 31911570..31911694,31911918..31912032,31912199..31912416, 31912566..31912640,31912764..31912878,31913386..31913492, 31913629..31913740,31913904..31914028,31914257..31914454)) /locus_tag="TCM_025320" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09946.1" /translation="MEGKADKAGADESNKSGVKQPDGNQHLNQSQASIYRYLTSPRIH SLLTSRSLQQAGRLPSIYNSIKGKEPLLCESFQSLNHEQDINVNDRRSFRTSTASVFH AEHMFPPPSMETPNHGSTITSGHSIGNLNNSVEASNDYLLPPETQQGDWISGSSLSNT NWINWQSSSQITKPKAATAWGPQGFRYQAVLNQILASNNSHLNDDTPLQLQPAKMPIQ QGAGSSTKGESSPIQFDGIVPTNPDMRKMTRQDSSPPTPKLPFINWMLPGQDNQGLNN PSNQDQSSHGNQDQNNIGNQGQNTPSNQGKNNSIPLAFGSRSQEIFGTSRGASPIALS PLSSRSLQQAGTSPSIYKSIKGKEPFLCESFQSFNHEQDINVNDQQPFRTSTGSVFHA EHMFSPPSMETPDHGSKLTSGHSTGNLKNFLEASNDYHLPISNLPPKFRLGSSSGLQV PETQKGNWTSGSSLANTDWINWQPSSQITKPEPATALGSQGFEFQASLNQVMASNNSH LSDDPPRQLQPTKAPIQQGFGSSIKEASSPIQFDDNVPSNSNKRKVTWHDSTPPTPKV PFINWMLPGQDNQKVPFINWMLPAQDNQGQNSLGNQGQNTPDNRGDNSSVSNNTPPPP KLPFINWMLPGQGKQGENIPGNQGQNILDIQGKNNSVSNSTPPPSKLPFINWMLPGQG NQGENNRGNQGQNTPDNQGKNNSVSNSTPTPPKLPFINWMLPGQSNQGQNTSDNQGTN NSVSNSTPPPPKLPFINWMLPGQGNQGENHPGDQGQKTLDNQGTNNSVSDSTPPAPKL PFINWMLPGQGNQGENHPGDQGQKTLDNQGTNNSVSDSTPPPPKLPFINWMLPGHSNQ GENGLGNQGQETPDSQGKNSSVSNSTPPSPKLPFINWMLPGQGNQGQNSPDNQG" mobile_element complement(31913095..31913150) /note="source:scaffold_5_CACTA_0584 1925 1980" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(31913104..31913183) /note="source:CACAO_Again_on_E207_scaffold_9 1003 1082" /mobile_element_type="transposon:TIR/hAT" gene 31915706..31917728 /locus_tag="TCM_025321" /note="dbxref CacaoGD:Thecc1EG025321" mRNA join(31915706..31916057,31916286..31916719, 31916795..31916867,31916953..31917045,31917119..31917195, 31917281..31917728) /locus_tag="TCM_025321" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(31915799..31916057,31916286..31916719, 31916795..31916867,31916953..31917045,31917119..31917195, 31917281..31917472) /locus_tag="TCM_025321" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09947.1" /translation="MCNYCDLGGLGIIDIGLKNRALLNKWLWCFCNDSNSLWKQVIVE KLGNKEDRLMSRPAQGVRVSGFWKSITKPLDGSCCFNNFVLDGHLESQVLVREFDDKL IWKGNTSGDYNTRSLYKAVHNNTEYASNWRQIWSVLAPFKTEIFYWKLVRGRLAVKDS LVSKGILSDALIICLLCKKERETIGHLFFTCECTWLLWKWWGSYGMLIGLHMGILSRV FYLGSGLAAAWKMENYGWLIKSLNLSKLEWPGGAMQNASSALVKTISKVAKFNTDGAS RGIPDKSGIDGPSSLLLRKLLFSLLHRSGAPLPLFAVMKCLEKVQYWQIRYVPCSANG EADVLTKSGVQRAHGLLWINTEAIGNLRNNLPLGNIDAADC" mobile_element complement(31917396..31917768) /note="source:CACAO_Again_on_E160_scaffold_6 3640 4007" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(31918009..31918100) /note="source:CACAO_Again_on_E160_scaffold_6 3551 3642" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(31919082..31919107) /note="source:CACAO_Mariner_E220_scaffold_9 9008 9135" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(31919108..31919209) /note="source:CACAO_PIF_E119_scaffold_3 1767 1867" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 31920539..31920760 /note="source:scaffold_1_CACTA_0016 1520 1738" /mobile_element_type="transposon:TIR/CACTA" gene complement(31922207..31923122) /locus_tag="TCM_025322" /note="dbxref CacaoGD:Thecc1EG025322" mRNA complement(join(31922207..31922608,31922759..31922884, 31922998..31923122)) /locus_tag="TCM_025322" /product="Late embryogenesis abundant protein family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028534001" /inference="similar to AA sequence:Phytozome:POPTR_0002s25340.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2728t1" CDS complement(join(31922393..31922608,31922759..31922884, 31922998..31923105)) /locus_tag="TCM_025322" /codon_start=1 /product="Late embryogenesis abundant protein family protein, putative" /protein_id="EOY09948.1" /db_xref="Phytozome:POPTR_0002s25340.1" /translation="MAILNLVNNLFTIGNFGATITRNRLVSAAVRPRFIQASSKQEAQ AACDKAKEAVKQGANEAKKTGENIKDKATSTADQVGQKTKEMAGKATDAAQEMTAKAK QTAQNAWDSAKETAQKAKDTVLGKADETKEAIKENAEKIKQSINTKN" gene complement(31923588..31926765) /locus_tag="TCM_025323" /note="dbxref CacaoGD:Thecc1EG025323" mRNA complement(join(31923588..31924403,31926329..31926433, 31926548..31926765)) /locus_tag="TCM_025323" /product="N-terminal" /inference="alignment:exonerate- protein:2:ricco:30169.m006554" /inference="similar to AA sequence:ricco:30169.m006554" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g11595t00001" CDS complement(join(31924362..31924403,31926329..31926433, 31926548..31926616)) /locus_tag="TCM_025323" /note="dbxref ricco:30169.m006554" /codon_start=1 /product="N-terminal" /protein_id="EOY09949.1" /db_xref="TAIR:AT1G10865.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T3V9" /translation="MSKSCKGLAMELVKCLSESDCVKVEKRSFRECAGEKSPCISSEC VGLRETYFNCKRGQVDMRARIRGNKGY" gene complement(31927006..31930951) /locus_tag="TCM_025324" /note="dbxref CacaoGD:Thecc1EG025324" mRNA complement(join(31927006..31928706,31928827..31928928, 31930616..31930951)) /locus_tag="TCM_025324" /product="Alpha-1,4-glucan-protein synthase family protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene16775" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018959t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s07850.2" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:PASA:2:TSA:puevd3b024489t1a2; alternateUTRof:Thecc1EG025324t2; inference alignment:Newbler:10:TSA:cgbaP2_g07704t00001" mRNA complement(join(31927006..31928706,31928799..31928951, 31930616..31930951)) /locus_tag="TCM_025324" /product="Alpha-1,4-glucan-protein synthase family protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene16775" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018959t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s07850.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:PASA:2:TSA:puevd3b024489t1a3; inference alignment:Newbler:10:TSA:cgbaP2_g07704t00001" mRNA complement(join(31927201..31928575,31928661..31928706, 31928827..31928951,31930616..31930661)) /locus_tag="TCM_025324" /product="Alpha-1,4-glucan-protein synthase family protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene16775" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018959t1" /inference="similar to AA sequence:frave:gene16775" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g07704t00001" CDS complement(join(31927527..31928575,31928661..31928706, 31928827..31928940)) /locus_tag="TCM_025324" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene16775; paralog of Thecc1EG018959t1" /codon_start=1 /product="Alpha-1,4-glucan-protein synthase family protein isoform 1" /protein_id="EOY09950.1" /db_xref="TAIR:AT5G16510.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NBT1" /translation="MIRQRTLRAGKLTERVLKLFIATGKDEVHSLIQALNIQDVLRNS KIGLICGTHEIKDDEIDIVIGAVSSDMTSFLNEWRPIFSRFHLIIVKDPDLKEELKIP EGFNLDVYTKSDIDRVVGSSTSILFSGYSCRYFGYLVSLKKYIISVDNDCLPARDNKG FLVDAVAQHITNLTTPATPFFFNTLYDPFSEGADFVRGYPFSLRSGVKCALSCGLWLN LADHDAPTQALKTRQRNSRYVDAVITVPARALAPISGINIAFDREVVGPALVPALRLA GEGKFRWETMEDIWSGMCVKVVCDHLGLGVKSGLPYVWRTDRGDAISSLKKEWEGVKL MEEVVPFFQSVRLPRTATTAEDCVVEVAKAVKEQLGSTDPVFARAAGAMLDWVKLWKS VGSSSSPPGV" CDS complement(31927527..31928585) /locus_tag="TCM_025324" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG018959t1" /codon_start=1 /product="Alpha-1,4-glucan-protein synthase family protein isoform 2" /protein_id="EOY09951.1" /db_xref="Phytozome:POPTR_0019s07850.2" /db_xref="TAIR:AT5G16510.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NBT1" /translation="MSLEIKDDEIDIVIGAVSSDMTSFLNEWRPIFSRFHLIIVKDPD LKEELKIPEGFNLDVYTKSDIDRVVGSSTSILFSGYSCRYFGYLVSLKKYIISVDNDC LPARDNKGFLVDAVAQHITNLTTPATPFFFNTLYDPFSEGADFVRGYPFSLRSGVKCA LSCGLWLNLADHDAPTQALKTRQRNSRYVDAVITVPARALAPISGINIAFDREVVGPA LVPALRLAGEGKFRWETMEDIWSGMCVKVVCDHLGLGVKSGLPYVWRTDRGDAISSLK KEWEGVKLMEEVVPFFQSVRLPRTATTAEDCVVEVAKAVKEQLGSTDPVFARAAGAML DWVKLWKSVGSSSSPPGV" CDS complement(31927527..31928585) /locus_tag="TCM_025324" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG018959t1" /codon_start=1 /product="Alpha-1,4-glucan-protein synthase family protein isoform 2" /protein_id="EOY09953.1" /db_xref="Phytozome:POPTR_0019s07850.2" /db_xref="TAIR:AT5G16510.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NBT1" /translation="MSLEIKDDEIDIVIGAVSSDMTSFLNEWRPIFSRFHLIIVKDPD LKEELKIPEGFNLDVYTKSDIDRVVGSSTSILFSGYSCRYFGYLVSLKKYIISVDNDC LPARDNKGFLVDAVAQHITNLTTPATPFFFNTLYDPFSEGADFVRGYPFSLRSGVKCA LSCGLWLNLADHDAPTQALKTRQRNSRYVDAVITVPARALAPISGINIAFDREVVGPA LVPALRLAGEGKFRWETMEDIWSGMCVKVVCDHLGLGVKSGLPYVWRTDRGDAISSLK KEWEGVKLMEEVVPFFQSVRLPRTATTAEDCVVEVAKAVKEQLGSTDPVFARAAGAML DWVKLWKSVGSSSSPPGV" mRNA complement(join(<31927530..31928706,31928799..31928928, 31930616..31930637)) /locus_tag="TCM_025324" /product="Alpha-1,4-glucan-protein synthase family protein isoform 3" /inference="alignment:exonerate-protein:2:frave:gene16775" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018959t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s07850.2" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g07704t00001; inference alignment:Newbler:10:TSA:cgbaP2_g07704t00001" CDS complement(<31927530..31928585) /locus_tag="TCM_025324" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG018959t1" /codon_start=1 /product="Alpha-1,4-glucan-protein synthase family protein isoform 3" /protein_id="EOY09952.1" /db_xref="Phytozome:POPTR_0019s07850.2" /db_xref="TAIR:AT5G16510.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NBT1" /translation="MSLEIKDDEIDIVIGAVSSDMTSFLNEWRPIFSRFHLIIVKDPD LKEELKIPEGFNLDVYTKSDIDRVVGSSTSILFSGYSCRYFGYLVSLKKYIISVDNDC LPARDNKGFLVDAVAQHITNLTTPATPFFFNTLYDPFSEGADFVRGYPFSLRSGVKCA LSCGLWLNLADHDAPTQALKTRQRNSRYVDAVITVPARALAPISGINIAFDREVVGPA LVPALRLAGEGKFRWETMEDIWSGMCVKVVCDHLGLGVKSGLPYVWRTDRGDAISSLK KEWEGVKLMEEVVPFFQSVRLPRTATTAEDCVVEVAKAVKEQLGSTDPVFARAAGAML DWVKLWKSVGSSSSPPGV" gene complement(31931432..31937131) /locus_tag="TCM_025325" /note="dbxref CacaoGD:Thecc1EG025325" mRNA complement(join(31931432..31931892,31933430..31933566, 31933675..31934901,31934933..31936508,31936655..31936700, 31937000..31937131)) /locus_tag="TCM_025325" /product="Uncharacterized protein isoform 1" /inference="similar to AA sequence:ricco:30128.m009015" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00118t00001; inference alignment:Newbler:10:TSA:cgbaB_g00118t00001" mRNA complement(join(31931432..31931892,31933430..31933566, 31933675..31934901,31934933..31936508,31936655..31937131)) /locus_tag="TCM_025325" /product="Uncharacterized protein isoform 1" /inference="similar to AA sequence:ricco:30128.m009015" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00118t00003; alternateUTRof:Thecc1EG025325t1; inference alignment:Newbler:10:TSA:cgbaB_g00118t00001" gene complement(31931432..31934096) /locus_tag="TCM_025326" /note="dbxref CacaoGD:Thecc1EG025326" mRNA complement(join(31931432..31931892,31933430..31933566, 31933675..31934096)) /locus_tag="TCM_025326" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene16775" /inference="similar to AA sequence:Phytozome:POPTR_0019s07940.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc4379t2" CDS complement(join(31931677..31931892,31933430..31933566, 31933675..31934038)) /locus_tag="TCM_025326" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09956.1" /db_xref="Phytozome:POPTR_0019s07940.1" /translation="MKESMENLDAASKEMKLGTDIEGLSEKMDVDNIPSVGLVSETAK NGSSTTEIIVESAILMEGGRAEVGNENNVEQNYLLNWEKKDVIFSNKDEREIGDEQGL DLLSTVSQQGSPSYVNTFEESHPSLSYSDHQEISDSLELPISTKAQESDDIHISAAGA IDKASNEALYSKAKVWEQINALRTIVGYEAARKETCTEELKALYLFTGIEPPASFKDT SDVVEVNAKLRFLMSVIGVK" CDS complement(join(31934893..31934901,31934933..31936507)) /locus_tag="TCM_025325" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30128.m009015" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY09954.1" /translation="MDDPESEWEIQESSGGNSDNGKLRWMMRLGKKILVTGIVVSSAP FVLPPLVAISAIGFFCLVPYGIFLLSYACTETVMSRLFPMPSPTAPLLLEYREAYDGE EEANGDEKQGEQNEVIKGGFNMEREEKEIKEDTIEEVEMRIELVDKVKEELVEGNILQ GDAFSHDGVENDEKKSMEEVDEILEGNRHEEDDGEFLDEEKESPSQSFEVEVKEVTES KAEQPTVEESRGEQLAGDGQGSEAIVEGDKKHSSNIEKEPPLEAENVEDNGELVRERS GLLGRNKVENKSDYARDDKESVQNVDAQRKPTKKTELKVEGTTKRKGEQSIAESVNEH PGDEIHQGEEKERGNLNKETTSELKNVAAQIVQATNIESDELVRESRGSLERGREKGR NRDAVEDKQGVKRAKVDAEGELLEGNERATERKQKQLLVEESVGEQPVDEVSGILGGL EGSDKNDSNMEETPLEVKNIPVQLVQSIDVEENEKLVIGARGLSERISDESKPDHEVD DKQRAERVNVGGVGKQSQK" CDS complement(join(31934893..31934901,31934933..31936507)) /locus_tag="TCM_025325" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30128.m009015" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY09955.1" /translation="MDDPESEWEIQESSGGNSDNGKLRWMMRLGKKILVTGIVVSSAP FVLPPLVAISAIGFFCLVPYGIFLLSYACTETVMSRLFPMPSPTAPLLLEYREAYDGE EEANGDEKQGEQNEVIKGGFNMEREEKEIKEDTIEEVEMRIELVDKVKEELVEGNILQ GDAFSHDGVENDEKKSMEEVDEILEGNRHEEDDGEFLDEEKESPSQSFEVEVKEVTES KAEQPTVEESRGEQLAGDGQGSEAIVEGDKKHSSNIEKEPPLEAENVEDNGELVRERS GLLGRNKVENKSDYARDDKESVQNVDAQRKPTKKTELKVEGTTKRKGEQSIAESVNEH PGDEIHQGEEKERGNLNKETTSELKNVAAQIVQATNIESDELVRESRGSLERGREKGR NRDAVEDKQGVKRAKVDAEGELLEGNERATERKQKQLLVEESVGEQPVDEVSGILGGL EGSDKNDSNMEETPLEVKNIPVQLVQSIDVEENEKLVIGARGLSERISDESKPDHEVD DKQRAERVNVGGVGKQSQK" gene 31938618..31960586 /locus_tag="TCM_025327" /note="dbxref CacaoGD:Thecc1EG025327" mRNA join(31938618..31938898,31938964..31939046, 31939470..31939542,31939635..31939709,31939792..31939848, 31942406..31942451,31943821..31943896,31945754..31945829, 31945985..31946017,31946101..31946169,31946368..31946474, 31946965..31947037,31947154..31947192,31947839..31947933, 31948474..31948580,31948658..31948989,31960554..31960580) /locus_tag="TCM_025327" /product="Eukaryotic release factor 1 (eRF1) family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g36200.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022360t1" /inference="similar to AA sequence:ricco:30128.m009016" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaL_g09626t00001" mRNA join(31938712..31938898,31938964..31939046, 31939470..31939542,31939635..31939709,31939792..31939848, 31942406..31942451,31943821..31943896,31945754..31945830, 31947846..31947933,31948474..31948580,31948658..31948994, 31960553..31960586) /locus_tag="TCM_025327" /product="Eukaryotic release factor 1 family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g36200.1" /inference="similar to AA sequence:ricco:30128.m009016" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc129t11; inference alignment:Newbler:10:TSA:cgbaL_g09626t00001" mRNA join(31938712..31938898,31938964..31939046, 31939470..31939542,31939635..31939709,31939792..31939848, 31942406..31942451,31943821..31943896,31945754..31945829, 31945985..31946017,31946101..31946169,31946368..31946474, 31946965..31947037,31947154..31947192,31947839..31947933, 31948474..31948580,31948658..31948995,31960554..31960586) /locus_tag="TCM_025327" /product="Eukaryotic release factor 1 (eRF1) family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g36200.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022360t1" /inference="similar to AA sequence:ricco:30128.m009016" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7914t3; alternateUTRof:Thecc1EG025327t1; inference alignment:Newbler:10:TSA:cgbaL_g09626t00001" mRNA join(31938712..31938898,31938964..31939046, 31939470..31939542,31939635..31939709,31939792..31939848, 31942406..31942451,31943821..31943896,31945754..31945829, 31945985..31946017,31946101..31946169,31946368..31946474, 31946965..31947037,31947154..31947648) /locus_tag="TCM_025327" /product="Eukaryotic release factor 1 (eRF1) family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g36200.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022360t1" /inference="similar to AA sequence:Phytozome:Glyma10g31310.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc129t7; inference alignment:Newbler:10:TSA:cgbaL_g09626t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc185t10_C2" CDS join(31938848..31938898,31938964..31939046, 31939470..31939542,31939635..31939709,31939792..31939848, 31942406..31942451,31943821..31943896,31945754..31945830, 31947846..31947933,31948474..31948580,31948658..31948731) /locus_tag="TCM_025327" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30128.m009016" /codon_start=1 /product="Eukaryotic release factor 1 family protein isoform 4" /protein_id="EOY09960.1" /db_xref="TAIR:AT4G27650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZT87" /translation="MKVVRRDLVPNGPGSVKMIPVDSDDLWSVYNLIATGDSVMARTV RKVLRETAGGRDAERITLKLEIKVEAIDYDKEGSILRIRGKNILENEHVKIGAFHTLE LELHRPFVLRKDIWDSLALDVLQQASDPGASADLAVVLMQEGLANILLVGKSMTSTRS RIETSIPRKHGPAIAGYEAARACYGPKHVEIAHERMAVQTLLITDDLFRNSDIATRQK YVNLVNSVKDSGGTAHIFSSMHVSGEQLAQLTGIAAILRFPLPDLEDIEM" CDS join(31938848..31938898,31938964..31939046, 31939470..31939542,31939635..31939709,31939792..31939848, 31942406..31942451,31943821..31943896,31945754..31945829, 31945985..31946017,31946101..31946169,31946368..31946474, 31946965..31947037,31947154..31947192,31947839..31947933, 31948474..31948580,31948658..31948731) /locus_tag="TCM_025327" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30128.m009016; paralog of Thecc1EG022360t1" /codon_start=1 /product="Eukaryotic release factor 1 (eRF1) family protein isoform 1" /protein_id="EOY09957.1" /db_xref="TAIR:AT4G27650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZT87" /translation="MKVVRRDLVPNGPGSVKMIPVDSDDLWSVYNLIATGDSVMARTV RKVLRETAGGRDAERITLKLEIKVEAIDYDKEGSILRIRGKNILENEHVKIGAFHTLE LELHRPFVLRKDIWDSLALDVLQQASDPGASADLAVVLMQEGLANILLVGKSMTSTRS RIETSIPRKHGPAIAGYEAALKKFFENVLQAFMKHIDFNVVRCAVIASPGFTKDQFHR HLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVRA LKDFFSMLSNDPARACYGPKHVEIAHERMAVQTLLITDDLFRNSDIATRQKYVNLVNS VKDSGGTAHIFSSMHVSGEQLAQLTGIAAILRFPLPDLEDIEM" CDS join(31938848..31938898,31938964..31939046, 31939470..31939542,31939635..31939709,31939792..31939848, 31942406..31942451,31943821..31943896,31945754..31945829, 31945985..31946017,31946101..31946169,31946368..31946474, 31946965..31947037,31947154..31947192,31947839..31947933, 31948474..31948580,31948658..31948731) /locus_tag="TCM_025327" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30128.m009016; paralog of Thecc1EG022360t1" /codon_start=1 /product="Eukaryotic release factor 1 (eRF1) family protein isoform 1" /protein_id="EOY09958.1" /db_xref="TAIR:AT4G27650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZT87" /translation="MKVVRRDLVPNGPGSVKMIPVDSDDLWSVYNLIATGDSVMARTV RKVLRETAGGRDAERITLKLEIKVEAIDYDKEGSILRIRGKNILENEHVKIGAFHTLE LELHRPFVLRKDIWDSLALDVLQQASDPGASADLAVVLMQEGLANILLVGKSMTSTRS RIETSIPRKHGPAIAGYEAALKKFFENVLQAFMKHIDFNVVRCAVIASPGFTKDQFHR HLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVRA LKDFFSMLSNDPARACYGPKHVEIAHERMAVQTLLITDDLFRNSDIATRQKYVNLVNS VKDSGGTAHIFSSMHVSGEQLAQLTGIAAILRFPLPDLEDIEM" CDS join(31938848..31938898,31938964..31939046, 31939470..31939542,31939635..31939709,31939792..31939848, 31942406..31942451,31943821..31943896,31945754..31945829, 31945985..31946017,31946101..31946169,31946368..31946474, 31946965..31947037,31947154..31947204) /locus_tag="TCM_025327" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG022360t1" /codon_start=1 /product="Eukaryotic release factor 1 (eRF1) family protein isoform 3" /protein_id="EOY09959.1" /db_xref="Phytozome:Glyma10g31310.1" /db_xref="TAIR:AT4G27650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZT87" /translation="MKVVRRDLVPNGPGSVKMIPVDSDDLWSVYNLIATGDSVMARTV RKVLRETAGGRDAERITLKLEIKVEAIDYDKEGSILRIRGKNILENEHVKIGAFHTLE LELHRPFVLRKDIWDSLALDVLQQASDPGASADLAVVLMQEGLANILLVGKSMTSTRS RIETSIPRKHGPAIAGYEAALKKFFENVLQAFMKHIDFNVVRCAVIASPGFTKDQFHR HLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVRA LKDFFSMLSNVRF" misc_feature join(31946967..31947037,31947154..31947868) /locus_tag="TCM_025327" /note="Gene fragment of Thecc1EG025327t1; dbxref gnl|CacaoGD|Thecc1EG025327t1; quality class is mediumpartial-partof is thecc1eg025327t1, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc185t7; dbxref CacaoGD:Thecc1EG025329t1" mobile_element complement(31947605..31947644) /note="source:scaffold_5_CACTA_0580 13317 13356" /mobile_element_type="transposon:TIR/CACTA" assembly_gap 31948996..31958995 /estimated_length=10000 /gap_type="between scaffolds" mobile_element 31958996..31959437 /note="source:INTACT135F_F90_scaffold_2-int 13569 14010" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 31959946..31960078 /note="source:scaffold_1_CACTA_0008 1247 1359" /mobile_element_type="transposon:TIR/CACTA" gene 31960728..31962276 /locus_tag="TCM_025330" /note="dbxref CacaoGD:Thecc1EG025330" mRNA 31960728..31962276 /locus_tag="TCM_025330" /product="U-box domain-containing protein 30" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034670t1" /inference="similar to AA sequence:frave:gene02604" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.46 coverage" CDS 31960750..31961568 /locus_tag="TCM_025330" /note="dbxref frave:gene02604; paralog of Thecc1EG034670t1" /codon_start=1 /product="U-box domain-containing protein 30" /protein_id="EOY09961.1" /db_xref="TAIR:AT5G65920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q058P4" /translation="MTKIPLSYSQIYNLVHIKYFFLSHPPFPLLSADLPLFLLADLPF FLSLLLFPFFSQPLFPTLPLFLSAALPLSLSTVLPRSSLLSLHHSSTVWVLSEDVQGR VKEILENLKKVKGQARGQALKELRQVVQAHGTAKKTVVACGGVGLISSLLGPFTTHVV GSEVVGVLVNLNLDFDSKFDLLQLTKISLMVDILNEGSIETKINCTRLIGMLMEGNDS ASENVASLSLLVGLLRLVKDKKRLYGVLAGLSSLKKICSHESIYKNNYPFIKIF" mobile_element 31961560..31961950 /note="source:CACAO_on_E732_scaffold_9 3557 3931" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 31962328..31978147 /locus_tag="TCM_025331" /note="dbxref CacaoGD:Thecc1EG025331" mRNA join(31962328..31965100,31978047..31978147) /locus_tag="TCM_025331" /product="Dynamin related protein 4C" /inference="alignment:exonerate- protein:2:frave:gene00665.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025335t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s01940.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.24 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc247t9" CDS 31962872..31965082 /locus_tag="TCM_025331" /note="paralog of Thecc1EG025335t1" /codon_start=1 /product="Dynamin related protein 4C" /protein_id="EOY09962.1" /db_xref="Phytozome:POPTR_0003s01940.1" /db_xref="TAIR:AT1G60500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZP55" /translation="MNNFLLKHQVLRSPLQSATSLLLFLKPQAHQVTNVCLSLFISKM SGHEDVDSENTGVDGIVFYDFDDSPPYAAPAPTEQEKTVAAKVESAPIISSYNDKIRP LLDAIDKLRLLMVMKEGIQLPTIVVVGDQSSGKSSVLDSLAGVNLPRSQGICTRVPLI IRLQNHSSPRPDLYLEYSGKVVPVDESYIATAINLATDEVAGNGKGISNTPLTLVVKK DGVPDLTMVDLPGITRVPVHGQPENIYEQIRDIIMQYITPKESIILNVLSASVDFSTC ESIKMSRQVDKTGERTLAVVTKADKAPEELLQKVTADDVNIGLGYVCVRNRIGDESHE EASREEARLFQTHPHLSRIDKSIVGVPVLARKLVQIQANTIARCLPEIVKNISEKLNA NVSELERMPKALTSVADAMTAFMRIIGAVKESLRKLLWRGDFDEYPDGSSKHGTARFV EMLNQFSYELHNCEESDPTKDFLAEEIKVLEDAKGIELPNFLSREVFLRILQRKVERI SCTPIKFAETIWDYIDGVVMAVLMRHSEMYPQLKVSTTRAAHNLVQKMRGQSINRVKE IVQMEKLTCYTCNPEYMVEWTKLMNQQDNFTKNLNTGPNHMWMPSSVMVEGFGHIAVE HLRHHSCILLQQAFDLKMRMTAYWKIVLQRLVDSMALHLRYCVHNLVNNNMEEIVNEL IGPDGHGIEMMLVESPAIAAKREKLKKSIKLLKESKDVVAKVMDRIASYGELAA" gene 31967838..31984961 /locus_tag="TCM_025332" /note="dbxref CacaoGD:Thecc1EG025332" mRNA join(31967838..31967927,31975820..31976300, 31976409..31976467,31976600..31976735,31978326..31978625, 31984918..31984961) /locus_tag="TCM_025332" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017202t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(31967922..31967927,31975820..31976300, 31976409..31976467,31976600..31976735,31978326..31978516) /locus_tag="TCM_025332" /note="paralog of Thecc1EG017202t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09963.1" /translation="MKELISKPDTLWVRVLMHKYNFNRVSCSYHIMKSGYSNLWRSRS KLWCKFIKNVRWSINDGASISFWSDIWLGDLPLLNNATDKVFLVDMRDRVRDYMMSNG EWDKYRLTFMLPVEMVKKILYLIHPSLSASLDMPYWALTSFGDLTISSTYDQLKTLFD SDKRVRHRLLFDASCSQCCVVETEFSIFDVPWSIIFVITYWYIWKCRNLLIFEGCEIS LEKQLSIIKNFTEVASKGRCCKNHLALGRCLPSHDEDPNTSGKCWSYCSLECRGGVCK RMSSARRHQCHCYC" mobile_element 31977351..31977361 /note="source:CACAO_M_S_E122136_F76_scaffold_10 13647 13673" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 31977362..31977409 /note="source:CACAO_Mariner_E25_scaffold_1 3188 3235" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 31977410..31977434 /note="source:CACAO_M_S_E122136_F76_scaffold_10 13674 13743" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 31978538..31979638 /note="source:CACAO_M_E49205_F4_scaffold_6 2148 3237" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(31979924..31980580) /note="source:INTACT19_F111_scaffold_6-int 1 672" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 31981124..31985083 /note="source:CACAO_M_E44116_F10_scaffold_5 1 3960" /mobile_element_type="retrotransposon:LTR/Copia" gene 31988018..31990998 /locus_tag="TCM_025335" /note="dbxref CacaoGD:Thecc1EG025335" mRNA 31988018..31990998 /locus_tag="TCM_025335" /product="Dynamin related protein 4C" /inference="alignment:exonerate-protein:2:frave:gene00665" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025331t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s01940.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.23 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc247t9" CDS 31988087..31990168 /locus_tag="TCM_025335" /note="paralog of Thecc1EG025331t1" /codon_start=1 /product="Dynamin related protein 4C" /protein_id="EOY09964.1" /db_xref="Phytozome:POPTR_0003s01940.1" /db_xref="TAIR:AT1G60500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZP55" /translation="MSGHQDVDAESIGVDDIVIYDFDDSPPYAAPAPVEQEKVVAAKV ESAPIISSYNDKIRPLLDAIDKLRLLMVMKEGIQLPTIVVVGDQSSGKSSVLDSLAGV NLPRSQGICTRVPLIIRLQNHSSPRPDLYLEYSGKVVPVDESYIATAINLATDEVAGN GKGISNTPLTLVVKKDGVPDLTMVDLPGITRVPVHGQPENIYEQIRDIIMQYITPKES IILNVLSASVDFSTCESIKMSRQVDKTGERTLAVVTKADKAPEELLQKVTADDVNIGL GYVCVRNRIGDESHEEASREEARLFQTHPHLSRIDKSIVGVPVLARKLVQIQANTIAR CLPEIVKNISEKLNANVSELERMPKALTSVADAMTAFMRIIGAVKESLRKLLWRGDFD EYPDDRSKHGTARLVEILNQFSHELHNCEESDPTKDFLAEEIKVLEDAKGIELPNFLS LEVFLRILQRKVERISCTPIKFVEMIWDYIDGVVMAVLMRHSEMYSQLKVSTTRAGHN LVQKMREQSINRVEEIVQMEKLTCYTCNPVYMVEWTKLMNAQDNIIKNVNTGPNHMGM PSRVTVEGFGDIAVEHLRHHSCGLLQQAFDLKMRMTAYWKIVLQRLVDSMALHLQYCV HNLVNNDMEEIVNELIGPDGHGIEMMLVESPAIAAKREKLKKSIKLLKESKDVVAKVM DRIASYGELAA" gene 31993698..31996898 /locus_tag="TCM_025336" /note="dbxref CacaoGD:Thecc1EG025336" mRNA 31993698..31996898 /locus_tag="TCM_025336" /product="Dynamin related protein 4C" /inference="alignment:exonerate- protein:2:frave:gene00665.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025339t1" /inference="similar to AA sequence:ricco:30128.m009018" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.38 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc247t14" CDS 31993820..31995904 /locus_tag="TCM_025336" /note="dbxref ricco:30128.m009018; paralog of Thecc1EG025339t1" /codon_start=1 /product="Dynamin related protein 4C" /protein_id="EOY09965.1" /db_xref="TAIR:AT1G60500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZP55" /translation="MRAGYHEDVASGSNGVLAVNHTVVCDNPQPLTILPITAQDPLMA RKEEEVAVQAPIISQYNDQIRPLLDAIDRLRLLMVMKEGIQLPTIVVVGDQSSGKSSV LESLAGISLPRSQGICTRVPLIMRLQSHQSPAPELHLEYNGKIVPVEESDITTAINLA TDEIAGHGKGISNTPLTLVVKKDGVPDLTMVDLPGITRVPVQGQPENIYEQIRDIIME YITPEESIILNVLSATVDFSTCESIRMSQKVDKTGERTLAVVTKADRAPEDLFEKVTA DDVNIGLGYVCVRNRIGDESYEEARREEARLFQTHPHLSRIDKSIVGVPVLAQKLVHI QANIIARCLPVIVKNINEKLNANASELERMPKALTSVADAMAAFMRIIGAAKESLRKL LLRGEFDEYPDDSSKHGTARLVEMLNQFSDELHESEDNDPTKDFLIEEIKVLEDAQGI GLPNFLPRSAFLRILQTKVDRISNMPIEFAEKVWDCIDGMVTSVLTRHSEIYYQLKVS TKKAAHNLVERMREQSMNRVKEIVQMEKLTDYTCNPDYMVKWTKLMTQQESFHKKVND AVMYGHSRVSLEGFGDIEVEHLRRHRNVLHQAFDLKVRMTAYWKIVLRRLVDSMALHL QYSVHNLVNNDMEEIVNELMGPDGRGIERMLVESPAIAGKREKLKRSIKLLKESKDVV AKIMDRIAGYDD" mobile_element 31996278..31996592 /note="source:scaffold_7_CACTA_0789 1865 2103" /mobile_element_type="transposon:TIR/CACTA" gene 32004378..32010848 /locus_tag="TCM_025338" /note="dbxref CacaoGD:Thecc1EG025338" mRNA join(32004378..32005039,32007743..32007780, 32009060..32010848) /locus_tag="TCM_025338" /product="Dynamin related protein 4C" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400043513.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025336t1" /inference="similar to AA sequence:ricco:30128.m009018" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.16 coverage" CDS join(32004529..32005039,32007743..32007780, 32009060..32010604) /locus_tag="TCM_025338" /note="dbxref ricco:30128.m009018; paralog of Thecc1EG025336t1" /codon_start=1 /product="Dynamin related protein 4C" /protein_id="EOY09966.1" /db_xref="TAIR:AT1G60500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZP55" /translation="MSVKVSVVYDEDVASTSNGALVVSGMVVYDDSQLLTILPIKAED PLMARGEEVAVQAPIVSQYNDQIRPLLDAIDRLKLLMVMKEGIQLPTIVVVGDQSSGK SSVLESLAGISLPRSQGICTKVPLIMRLQSHQSPTPELHLEYNGKTVSVEESHITTAI NLATDEITGHVRDDSEIQKELQEDGVPDLTMVDLPGITRVPVQGQPENIYEQIRDIIM EYIIPEESIILNVLSATVDFSTCESIRMSQKVDKTGERTRAVVTKADRAPEDLFEKVT ADDVNIGLGYVCVRNRIGDESYEEARREEARLFQTHPHLSMIDKSIVGVPVLAQKLVQ IQANIIARCLPVIVKNISEKLNANVSELERMPKALTSVADAMTAFMRIIEAAKESLRK LLLRGEFDEYPDDTSKHGTARFVEMLNHFSDELRKSKESDSTKDFLIEEIKVLEDAKG IGLPNFLPRNAFLRILQRKVDRISIMPIEFAEKIWDYIDGMVTSVMIRHSEIYYQLKG STKRAAHNLIGKMREQSMNRMKEIVQMEKLTDYTCNPDYMVECTKLMAQQENFVRNVN AALKKTYGPYRVSLEGFGDIEVEHLRQHCNFVHQAFDLKMRMTAYWKIVLQRLVDSMA LHLQYSVHSLVNNDMEEIVHELMGPDGRGIERMLVESPAIAKKREKLKKSIKLMKESK DVVAKIMDRIAGYDD" mobile_element 32005064..32007885 /note="source:INTACT174_F38_scaffold_5-int 478 3298" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(32010965..32011227) /note="source:CACAO_on_E10_scaffold_2 2815 3058" /mobile_element_type="transposon:TIR/hAT" mobile_element 32011218..32011288 /note="source:scaffold_7_CACTA_0789 2033 2103" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(32011384..32011524) /note="source:CACAO_PIF_E465_scaffold_115 5734 5881" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 32011978..32020918 /locus_tag="TCM_025339" /note="dbxref CacaoGD:Thecc1EG025339" mRNA join(32011978..32012147,32018076..32019839, 32020024..32020918) /locus_tag="TCM_025339" /product="Dynamin related protein 4C" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s01920.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025336t1" /inference="similar to AA sequence:ricco:30128.m009018" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.33 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9192t5" gene <32012252..32014622 /locus_tag="TCM_025340" /note="dbxref CacaoGD:Thecc1EG025340" mRNA join(<32012252..32012680,32014192..32014622) /locus_tag="TCM_025340" /product="Defensin-like family protein, putative" /note="quality class is medium-utrpoor, express is none, homology is paralog strong, intron is none, protein is utrpoor_complete" CDS <32012254..32012520 /locus_tag="TCM_025340" /codon_start=1 /product="Defensin-like family protein, putative" /protein_id="EOY09968.1" /translation="VRFVTNELFFFFSFLPLCSLVMGSSSFLSFFLFFLFAPITRFKQ RPSLLSRELWSILSFWSTLVSLNQGKVTFPSIQEEITFPLTIAI" mobile_element complement(32016172..32016673) /note="source:scaffold_3_CACTA_0377 4686 5251" /mobile_element_type="transposon:TIR/CACTA" CDS join(32018563..32019839,32020024..32020732) /locus_tag="TCM_025339" /note="dbxref ricco:30128.m009018; paralog of Thecc1EG025336t1" /codon_start=1 /product="Dynamin related protein 4C" /protein_id="EOY09967.1" /db_xref="TAIR:AT1G60500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZP55" /translation="MSALYDEDVASGCNGALVVNGMVVYDDPQPLTILPITAQDPPMA QEEEEVAVQAPIVSQYNDQIRPLLDAIDRLRLLMVMKEGIQLPTIVVVGDQSSGKSSV LESLAGISLPRSQGICTRVPLIMRLQSHQSPTPELHLEYNGKTVPVEESHITTAINLA TDEIAGHGKGISNTPLTLVVKKDGVPDLTMVDLPGITRVPVQGQPENIYEQIRDIIME YITPEESIILNVLSATVDFSTCESIRMSQKVDKTGERTLAVVTKADRAPEDLFEKVTA DDVNIGLGYVCVRNRIGDESYEEARREEARLFQTHPHLSRIDKSIVGVPVLAQKLVQI QANIIARCLPVIVKNISEKLNANASELERMPKALTSVADAMAAFMRIIGAAKESLRKL LLRGEFDEYPDDSSKHGTARFVEMLNQFSDELHDAFLRILQTKVDRISNMPIEFTEKV WDCIDGMVTSVLTRHSEIYYQLKVSTKRAAHNLVERMREQSMNRVKEIVQMEKLTDYT CNPDYMVKWTKLMTQQESFHKKVNDAVMYGHSRVSLEGFGDIEVEHLRQHRNVLDQAF DLKVRMTAYWKIVLRRLVDSMALHLQYSVHNLVNNDMEEIVNELMGPDGRGIERMLVE SPAIAGKREKLKRSIKLLKESKDVVAKIMDRIAGYDD" gene 32021438..32037465 /locus_tag="TCM_025341" /note="dbxref CacaoGD:Thecc1EG025341" mRNA join(32021438..32021948,32022063..32022169, 32023494..32023591,32024347..32024418,32025697..32025798, 32026317..32026367,32026537..32026602,32029479..32029526, 32035682..32035858,32035951..32036006,32036101..32036218, 32036465..32036554,32036759..32036868,32036984..32037465) /locus_tag="TCM_025341" /product="Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019145001" /inference="similar to AA sequence:frave:gene16780" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7864t3" mRNA join(32021597..32021950,32025749..32025798, 32026317..32026367,32026537..32026602,32029479..32029526, 32035682..32035858,32035951..32036006,32036101..32036218, 32036465..32036554,32036759..32036868,32036984..32037388) /locus_tag="TCM_025341" /product="Membrane insertion protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019145001" /inference="similar to AA sequence:frave:gene16780" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc987t9_C1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7864t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc986t1" mRNA join(32021605..32021952,32022063..32022169, 32023464..32023591,32024347..32024418,32025697..32025798, 32026317..32026367,32026537..32026602,32029479..32029526, 32035682..32035858,32035951..32036006,32036101..32036218, 32036465..32036554,32036759..>32036864) /locus_tag="TCM_025341" /product="Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019145001" /inference="similar to AA sequence:frave:gene16780" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc974t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7864t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc986t1" CDS join(32021689..32021950,32025749..32025798, 32026317..32026367,32026537..32026602,32029479..32029526, 32035682..32035858,32035951..32036006,32036101..32036218, 32036465..32036554,32036759..32036868,32036984..32037140) /locus_tag="TCM_025341" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene16780" /codon_start=1 /product="Membrane insertion protein, putative isoform 3" /protein_id="EOY09971.1" /db_xref="TAIR:AT3G44370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SPT7" /translation="MATSMILLSHLRRSSGLSTLSLARVSHLPSLPAPLSHPYFSPCL CPFAPSIARSFFSSADNVEESILPVRAIVSLLDGYHNLTGFPWCPIFPFLIASLHYIN VQISFGTSSVKKADPLLAKVYKFYLDFLTLPFFGIGFLIPQGSLVYWVTNSSLSLIQQ LTLKHPAVRAKLGLPDKDALATVENSEESSTAGTPSVEPPSKQRRIAVQNLSPKELLA LSIKHLSREEKDLAISLLKLALDKDPEHVKAMVVMGQTLMQKGLLVEASEYLEHAISK LSLSGHLTEVEDVDHLILSSQWAGVVYMKQGKKAEGLAHLERIANLKEPEDPKSKAHY FDGLLLLSSALLDSGRKAEALKFLRLVVAYNPNYNYLLEEVENEEDNFASDLVNSRRR DY" CDS join(32021918..32021952,32022063..32022169, 32023464..32023591,32024347..32024418,32025697..32025798, 32026317..32026367,32026537..32026602,32029479..32029526, 32035682..32035858,32035951..32036006,32036101..32036218, 32036465..32036554,32036759..>32036863) /locus_tag="TCM_025341" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene16780" /codon_start=1 /product="Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain, putative isoform 2" /protein_id="EOY09970.1" /db_xref="TAIR:AT3G44370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SPT7" /translation="MVTIISLASLGKWITIATATVGMRFALLPAVIIHLQKLKRIGEL GPKLPSPLPSTMSGRSYIDQILHFRKERKAIGCPSFLWFLAPFFTQVPCLLLWVTSIR RMSLDNHPGFDSGGALWFQNLTELPHGVLGPIFPFLIASLHYINVQISFGTSSVKKAD PLLAKVYKFYLDFLTLPFFGIGFLIPQGSLVYWVTNSSLSLIQQLTLKHPAVRAKLGL PDKDALATVENSEESSTAGTPSVEPPSKQRRIAVQNLSPKELLALSIKHLSREEKDLA ISLLKLALDKDPEHVKAMVVMGQTLMQKGLLVEASEYLEHAISKLSLSGHLTEVEDVD HLILSSQWAGVVYMKQGKKAEGLAHLERIANLKEPEDPKSKAHYFDGLLLL" CDS join(32024386..32024418,32025697..32025798, 32026317..32026367,32026537..32026602,32029479..32029526, 32035682..32035858,32035951..32036006,32036101..32036218, 32036465..32036554,32036759..32036868,32036984..32037140) /locus_tag="TCM_025341" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene16780" /codon_start=1 /product="Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain, putative isoform 1" /protein_id="EOY09969.1" /db_xref="TAIR:AT3G44370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SPT7" /translation="MSLDNHPGFDSGGALWFQNLTELPHGVLGPIFPFLIASLHYINV QISFGTSSVKKADPLLAKVYKFYLDFLTLPFFGIGFLIPQGSLVYWVTNSSLSLIQQL TLKHPAVRAKLGLPDKDALATVENSEESSTAGTPSVEPPSKQRRIAVQNLSPKELLAL SIKHLSREEKDLAISLLKLALDKDPEHVKAMVVMGQTLMQKGLLVEASEYLEHAISKL SLSGHLTEVEDVDHLILSSQWAGVVYMKQGKKAEGLAHLERIANLKEPEDPKSKAHYF DGLLLLSSALLDSGRKAEALKFLRLVVAYNPNYNYLLEEVENEEDNFASDLVNSRRRD Y" gene complement(32028937..32035460) /locus_tag="TCM_025343" /note="dbxref CacaoGD:Thecc1EG025343" mRNA complement(join(32028937..32029074,32030087..32031333, 32031515..32032089,32035329..32035460)) /locus_tag="TCM_025343" /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s44550.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038192t1" /inference="similar to AA sequence:Phytozome:Glyma05g10880.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc4840t1" mobile_element complement(32029786..32029830) /note="source:scaffold_1_CACTA_0029 8211 8253" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(32030125..32031333,32031515..32031994)) /locus_tag="TCM_025343" /note="paralog of Thecc1EG038192t1" /codon_start=1 /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /protein_id="EOY09972.1" /db_xref="Phytozome:Glyma05g10880.1" /db_xref="TAIR:AT4G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AMR4" /translation="MAKTAITGARRNTDSSEKESSKIGTAMTNGADYFSQHSFQLTSH KLNSKNYLEWAQFVKLAIDGRGKLGHLIGDEKQPEVGDPNLSKWRLENSLIIAWLINS MEYTIGKPYLFLPTARDVWEVVRETYSNVENSSQIFDLKTKCGNLCNQKRKRQVGCKW LDVKNAFLNDDLEEEVYMDPPPGFEKKFGSKVCKLKKSLYGLKQSPRAWFERFTRLVK CKGYIQGQIGHTMFTKYSTNRKIAILIVYVDDIILTRDDTPEMEQLKQCLASEFEIKD LESLKYFLGMEVARSKKEIAVSQRKYVLDLLKETRMNGCCLVETPTDPNQKLGDSKGD TVDTLRYQKQVRKLIHLSHTQPDIAFAVSLASQFMHSPHEEHLEAVYRTLRYLKSSPG KGLFCKKNERSIEAYTDVDWARSITDRKPTSSYCTFVWENLLTWGKKKQSVVAQSSAE AEYRSMAYAVCEMMWLKRALEEIRRPATMPTKLYCDNKAAISIAHNPVQYDRTKHVEI DRHFIKEKIEAGAICTPFVPTLQQIADILTKGLFRPNYEFLISKLGMIDIYAPT" mobile_element complement(32033339..32033451) /note="source:scaffold_8_CACTA_0860 11434 11538" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(32033911..32033998) /note="source:scaffold_10_CACTA_0130 2382 2472" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32034233..32034295 /note="source:scaffold_2_CACTA_0263 5430 5485" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32034794..32034888 /note="source:scaffold_8_CACTA_0860 11425 11517" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(32038136..32038184) /note="source:scaffold_4_CACTA_0491 524 573" /mobile_element_type="transposon:TIR/CACTA" gene 32039128..32039865 /locus_tag="TCM_025344" /note="dbxref CacaoGD:Thecc1EG025344" mRNA 32039128..32039865 /locus_tag="TCM_025344" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.30 coverage" CDS 32039642..32039842 /locus_tag="TCM_025344" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09973.1" /translation="MLQKQLFNIVGIQFGMAMAYGYGSLPGDQLMCCTCTDVIVAISS FRCPVIFLWEIGIISFTTRRFS" gene 32039958..32051382 /locus_tag="TCM_025345" /note="dbxref CacaoGD:Thecc1EG025345" mRNA join(32039958..32040912,32041595..32041686, 32041839..32042539,32044619..32044689,32046511..32046600, 32046714..32046920,32047085..32047183,32047984..32048116, 32050942..32051382) /locus_tag="TCM_025345" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s08560.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s08560.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7900t3" CDS join(32040547..32040912,32041595..32041686, 32041839..32042539,32044619..32044689,32046511..32046600, 32046714..32046920,32047085..32047183,32047984..32048116, 32050942..32051105) /locus_tag="TCM_025345" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09974.1" /db_xref="Phytozome:POPTR_0013s08560.1" /db_xref="TAIR:AT5G16520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N163" /translation="MACPKNSFLYNGSHCACQVGHFLNLSANSCTLYGGSSVIQTDSG IDYYAVSLPQTIFSFDSIKKFTQSQAVFLEATVVMLLSWLVFCFFLRFTKLGDGRNVW FRIRWWISRLDVCFATRHWLDDQKLVVKRKTELGGTFSIASWILFTGLFAALLYQIIE KRSIEVHNVKATNAPDLASFRNDMEFNMTTISSMSCSNLQRPTTLLTGSSGFIEGKVS PLSNFLNFSCHNRSLGPTITLKCSNCRLTQDFMSISWQFVDLPNSPASAVGFQFNVTA KDHSGRGHVSYVSGTLKNGSNFDNTPVTFRGVDTNILIFNLFPRVYRSANDLRLIQPL FHEFVPGSILSETSQLRASLESASNGQINTTLYINYLSSYIIEIERQNIIGAVGFLAD LGGLYCISMGIFLYLLVQCEYRIKKLRNEDSILRRIRNRRKAQERWDKVRKYVMYTWG CSALDNDNHSKEVSGCGSFIISSTHGNGSIREGGSSRKRRHLSNMDINFSKQASVPSE KNTNLEQPCSQEVISCKAGSMSSPEGRFYSRSEPPLKRDIPGSTKDQRRHFIGSNDAV AVPHQAVSLGDDVIPAPPPLEFKSGSQIELSDVEKNFQRLYDYNVMLREKFVATQSLL RALASKSSNPRTERQT" gene complement(32051409..32056933) /locus_tag="TCM_025347" /note="dbxref CacaoGD:Thecc1EG025347" mRNA complement(join(32051409..32051432,32051729..32051868, 32052329..32052388,32052501..32052612,32052727..32053315, 32055321..32055418,32055496..32055567,32055715..32055792, 32055903..32056003,32056665..32056933)) /locus_tag="TCM_025347" /product="Single-stranded nucleic acid binding R3H protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400040615" /inference="similar to AA sequence:ricco:30128.m009021" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7902t6" mRNA complement(join(32051409..32051432,32051729..32051868, 32052329..32053315,32055321..32055418,32055496..32055567, 32055715..32055792,32055903..32056003,32056665..32056760)) /locus_tag="TCM_025347" /product="Single-stranded nucleic acid binding R3H protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400040615" /inference="similar to AA sequence:ricco:30128.m009021" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc472t15; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7902t6" CDS complement(join(32052564..32052612,32052727..32053315, 32055321..32055418,32055496..32055567,32055715..32055792, 32055903..32056003,32056665..32056688)) /locus_tag="TCM_025347" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30128.m009021" /codon_start=1 /product="Single-stranded nucleic acid binding R3H protein, putative isoform 1" /protein_id="EOY09975.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RFV0" /translation="MSVTQFAMVEELAFLVKDNLPCKHLVLSMEEAFVNFLQDDTSSD GILELEPMNSYNRLLLHRLADIFGFAHESVGEGDDRHLVLERCPETSIPSILVSDILW QCDEPQSLTTSRHLLVREEAPAVAKTELPSFELSLEAREAAYLAARERIFSMDVEEVR EPVKEKPRTVPVVARRMIAHALGQKINSSSQNVNARDFKDHEGQPNELNIHDKDEVDN NLRTATYQDTVFVPGNAFSKANSNAHKHNASVVGKRNVSDKPAQKGPSDVRIPGRSRN RVNKEYSKEEHLGAAKRMFAHALGLRSAKDGVLLKSSETKAIDNKKELHEDTTVTNEK MQ" CDS complement(join(32052723..32053315,32055321..32055418, 32055496..32055567,32055715..32055792,32055903..32056003, 32056665..32056688)) /locus_tag="TCM_025347" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30128.m009021" /codon_start=1 /product="Single-stranded nucleic acid binding R3H protein, putative isoform 2" /protein_id="EOY09976.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RFV0" /translation="MSVTQFAMVEELAFLVKDNLPCKHLVLSMEEAFVNFLQDDTSSD GILELEPMNSYNRLLLHRLADIFGFAHESVGEGDDRHLVLERCPETSIPSILVSDILW QCDEPQSLTTSRHLLVREEAPAVAKTELPSFELSLEAREAAYLAARERIFSMDVEEVR EPVKEKPRTVPVVARRMIAHALGQKINSSSQNVNARDFKDHEGQPNELNIHDKDEVDN NLRTATYQDTVFVPGNAFSKANSNAHKHNASVVGKRNVSDKPAQKGPSDVRIPGRSRN RVNKEYSKEEHLGAAKRMFAHALGLRSAKDGVLLKSSETKAIDNK" gene complement(32057107..32062023) /locus_tag="TCM_025348" /note="dbxref CacaoGD:Thecc1EG025348" mRNA complement(join(32057107..32057132,32057246..32057814, 32059483..32062023)) /locus_tag="TCM_025348" /product="Pentatricopeptide repeat superfamily protein, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene20149" /inference="similar to AA sequence:frave:gene20149" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:PASA:2:TSA:puevd3b024511t1a2; alternateUTRof:Thecc1EG025348t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1965t4" mRNA complement(join(32057107..32057132,32057246..32057814, 32058742..32058829,32059253..32059321,32059483..32062023)) /locus_tag="TCM_025348" /product="Pentatricopeptide repeat superfamily protein, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene20149" /inference="similar to AA sequence:frave:gene20149" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1965t4" mRNA complement(join(32057648..32057814,32058742..32058829, 32059253..32061952)) /locus_tag="TCM_025348" /product="Pentatricopeptide repeat superfamily protein, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene20149" /inference="similar to AA sequence:frave:gene20149" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1965t4; alternateUTRof:Thecc1EG025348t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1965t4" mRNA complement(join(32057648..32057814,32058742..32061952)) /locus_tag="TCM_025348" /product="Pentatricopeptide repeat superfamily protein, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene20149" /inference="similar to AA sequence:frave:gene20149" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1965t8; alternateUTRof:Thecc1EG025348t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1965t4" CDS complement(32059595..32061928) /locus_tag="TCM_025348" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene20149" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein, putative isoform 1" /protein_id="EOY09977.1" /db_xref="TAIR:AT4G20770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SVH0" /translation="MWSKTNFVANLLQTCIDKKSILPGKVLHAYIFRSNLLANTFLCN RLIELYSKCNDPTSAHHMFDQTPQKNIYSWNAVLSALCKAGNLTFARKVFEQMPERNV ASWNNLISLMVKNGFQEKALDVYKLMVFEGFLPTHVTFASVLSACGSVVHLELGKRCH GLVIKIGLDKNIFVCNGLLSVYAKCGVMKEAIKVFGDIDDPNEVTFTTMMGGLGKIDG VFEALEMFRMMRRKGVQIDSVSLSAVLSACTKGGEYGEFGCCRENDRFLCSVVLGEQV HGLVVKLGFECDLYLSNSLLDMYAKNGNMKSAETIFSNLGKGSVVSWNIMIAGYGQKG QKEKAVECLRRMQCCSFEPDEVTYINMLAACSKCGDVETARRMFDSMLCPSVISWNAI ISGYSQNENHKEAIELFREMQFQNVKPDRTTVAVILGSCAGMEFLEGGKQVHAASQKA ALYTDNYVASGLIGMYSKCGKIKMAECIFSYVPELDIVCWNSMIAGLTLNSLDKEAFM LFKQMQQGGMLPTEFSYTAILSCCAKLSSSFQGRQVHSQIVKDGFMNYVFVGTALVDM YCKCGDIDGARKYFDKMPVRNTVTWNEMIHGYAQNGRGDEAVHLYKNMIASGEKPDGI TFIAVLTACSHSGLVDLGVRIFNSMQSDYGLEPELDHYTCIIDCLGRAGHFHDAELLM DKMPYKDDPVIWEVLLSSCRVHTNVSLAQRAAEELFRLKPESSSPYVLLANIYSSLGR WDDVRAVRELMSDRQIVKDPGYSWTEDKEQDISLSVG" CDS complement(32059595..32061928) /locus_tag="TCM_025348" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene20149" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein, putative isoform 1" /protein_id="EOY09978.1" /db_xref="TAIR:AT4G20770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SVH0" /translation="MWSKTNFVANLLQTCIDKKSILPGKVLHAYIFRSNLLANTFLCN RLIELYSKCNDPTSAHHMFDQTPQKNIYSWNAVLSALCKAGNLTFARKVFEQMPERNV ASWNNLISLMVKNGFQEKALDVYKLMVFEGFLPTHVTFASVLSACGSVVHLELGKRCH GLVIKIGLDKNIFVCNGLLSVYAKCGVMKEAIKVFGDIDDPNEVTFTTMMGGLGKIDG VFEALEMFRMMRRKGVQIDSVSLSAVLSACTKGGEYGEFGCCRENDRFLCSVVLGEQV HGLVVKLGFECDLYLSNSLLDMYAKNGNMKSAETIFSNLGKGSVVSWNIMIAGYGQKG QKEKAVECLRRMQCCSFEPDEVTYINMLAACSKCGDVETARRMFDSMLCPSVISWNAI ISGYSQNENHKEAIELFREMQFQNVKPDRTTVAVILGSCAGMEFLEGGKQVHAASQKA ALYTDNYVASGLIGMYSKCGKIKMAECIFSYVPELDIVCWNSMIAGLTLNSLDKEAFM LFKQMQQGGMLPTEFSYTAILSCCAKLSSSFQGRQVHSQIVKDGFMNYVFVGTALVDM YCKCGDIDGARKYFDKMPVRNTVTWNEMIHGYAQNGRGDEAVHLYKNMIASGEKPDGI TFIAVLTACSHSGLVDLGVRIFNSMQSDYGLEPELDHYTCIIDCLGRAGHFHDAELLM DKMPYKDDPVIWEVLLSSCRVHTNVSLAQRAAEELFRLKPESSSPYVLLANIYSSLGR WDDVRAVRELMSDRQIVKDPGYSWTEDKEQDISLSVG" CDS complement(32059595..32061928) /locus_tag="TCM_025348" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene20149" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein, putative isoform 1" /protein_id="EOY09979.1" /db_xref="TAIR:AT4G20770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SVH0" /translation="MWSKTNFVANLLQTCIDKKSILPGKVLHAYIFRSNLLANTFLCN RLIELYSKCNDPTSAHHMFDQTPQKNIYSWNAVLSALCKAGNLTFARKVFEQMPERNV ASWNNLISLMVKNGFQEKALDVYKLMVFEGFLPTHVTFASVLSACGSVVHLELGKRCH GLVIKIGLDKNIFVCNGLLSVYAKCGVMKEAIKVFGDIDDPNEVTFTTMMGGLGKIDG VFEALEMFRMMRRKGVQIDSVSLSAVLSACTKGGEYGEFGCCRENDRFLCSVVLGEQV HGLVVKLGFECDLYLSNSLLDMYAKNGNMKSAETIFSNLGKGSVVSWNIMIAGYGQKG QKEKAVECLRRMQCCSFEPDEVTYINMLAACSKCGDVETARRMFDSMLCPSVISWNAI ISGYSQNENHKEAIELFREMQFQNVKPDRTTVAVILGSCAGMEFLEGGKQVHAASQKA ALYTDNYVASGLIGMYSKCGKIKMAECIFSYVPELDIVCWNSMIAGLTLNSLDKEAFM LFKQMQQGGMLPTEFSYTAILSCCAKLSSSFQGRQVHSQIVKDGFMNYVFVGTALVDM YCKCGDIDGARKYFDKMPVRNTVTWNEMIHGYAQNGRGDEAVHLYKNMIASGEKPDGI TFIAVLTACSHSGLVDLGVRIFNSMQSDYGLEPELDHYTCIIDCLGRAGHFHDAELLM DKMPYKDDPVIWEVLLSSCRVHTNVSLAQRAAEELFRLKPESSSPYVLLANIYSSLGR WDDVRAVRELMSDRQIVKDPGYSWTEDKEQDISLSVG" CDS complement(32059595..32061928) /locus_tag="TCM_025348" /note="encoded by transcript variant 4; alternatively spliced; dbxref frave:gene20149" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein, putative isoform 1" /protein_id="EOY09980.1" /db_xref="TAIR:AT4G20770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SVH0" /translation="MWSKTNFVANLLQTCIDKKSILPGKVLHAYIFRSNLLANTFLCN RLIELYSKCNDPTSAHHMFDQTPQKNIYSWNAVLSALCKAGNLTFARKVFEQMPERNV ASWNNLISLMVKNGFQEKALDVYKLMVFEGFLPTHVTFASVLSACGSVVHLELGKRCH GLVIKIGLDKNIFVCNGLLSVYAKCGVMKEAIKVFGDIDDPNEVTFTTMMGGLGKIDG VFEALEMFRMMRRKGVQIDSVSLSAVLSACTKGGEYGEFGCCRENDRFLCSVVLGEQV HGLVVKLGFECDLYLSNSLLDMYAKNGNMKSAETIFSNLGKGSVVSWNIMIAGYGQKG QKEKAVECLRRMQCCSFEPDEVTYINMLAACSKCGDVETARRMFDSMLCPSVISWNAI ISGYSQNENHKEAIELFREMQFQNVKPDRTTVAVILGSCAGMEFLEGGKQVHAASQKA ALYTDNYVASGLIGMYSKCGKIKMAECIFSYVPELDIVCWNSMIAGLTLNSLDKEAFM LFKQMQQGGMLPTEFSYTAILSCCAKLSSSFQGRQVHSQIVKDGFMNYVFVGTALVDM YCKCGDIDGARKYFDKMPVRNTVTWNEMIHGYAQNGRGDEAVHLYKNMIASGEKPDGI TFIAVLTACSHSGLVDLGVRIFNSMQSDYGLEPELDHYTCIIDCLGRAGHFHDAELLM DKMPYKDDPVIWEVLLSSCRVHTNVSLAQRAAEELFRLKPESSSPYVLLANIYSSLGR WDDVRAVRELMSDRQIVKDPGYSWTEDKEQDISLSVG" gene complement(32062243..32069277) /locus_tag="TCM_025349" /note="dbxref CacaoGD:Thecc1EG025349" mRNA complement(join(32062243..32063003,32063863..32063950, 32065334..32065404,32065488..32065602,32067663..32067714, 32068773..32068848,32069010..32069277)) /locus_tag="TCM_025349" /product="Haloacid dehalogenase-like hydrolase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019144001" /inference="similar to AA sequence:Phytozome:POPTR_0010s15290.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaL_g12588t00001" mRNA complement(join(32062628..32063003,32063863..32063950, 32067663..32067714,32068773..32068848,32069010..32069256)) /locus_tag="TCM_025349" /product="Haloacid dehalogenase-like hydrolase superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019144001" /inference="similar to AA sequence:frave:gene16786" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7890t4; inference alignment:Newbler:10:TSA:cgbaL_g12588t00001" CDS complement(join(32062844..32063003,32063863..32063950, 32067663..32067714,32068773..32068848,32069010..32069218)) /locus_tag="TCM_025349" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene16786" /codon_start=1 /product="Haloacid dehalogenase-like hydrolase superfamily protein isoform 2" /protein_id="EOY09982.1" /db_xref="TAIR:AT1G79790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q84VZ1" /translation="MAQLMRAPTICFNPKLFPKHTRNRMALNANNMTSSLNNNTNNRK LPILLFDIMDTIVRDPFYHDIPAFFRMSFKELIECKHPTAWIEFENGVINEEELAGKF FKDGRPFDLEGKRKPDPYFYLAVVEHLKVDPVSCIFIDDRIKNVEAAVGIGITGLHFK NPDLLRQDLERLGVDISIDGHVSENQLKPAEGQT" CDS complement(join(32062844..32063003,32063863..32063950, 32065334..32065404,32065488..32065602,32067663..32067714, 32068773..32068848,32069010..32069218)) /locus_tag="TCM_025349" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Haloacid dehalogenase-like hydrolase superfamily protein isoform 1" /protein_id="EOY09981.1" /db_xref="Phytozome:POPTR_0010s15290.1" /db_xref="TAIR:AT1G79790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q84VZ1" /translation="MAQLMRAPTICFNPKLFPKHTRNRMALNANNMTSSLNNNTNNRK LPILLFDIMDTIVRDPFYHDIPAFFRMSFKELIECKHPTAWIEFENGVINEEELAGKF FKDGRPFDLEGLKNCMRRGYSYIDGIEQLLQALKQNNYEMHAFTNYPIWYKIIEDKLN ISNYLSWTFCSCIYGKRKPDPYFYLAVVEHLKVDPVSCIFIDDRIKNVEAAVGIGITG LHFKNPDLLRQDLERLGVDISIDGHVSENQLKPAEGQT" mobile_element complement(32066004..32066085) /note="source:CACAO_M_E5326_F22_scaffold_2 3396 3478" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32070474..32071005) /note="source:CACAO_Mariner_E637_scaffold_262 769 1342" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(32071159..32071527) /note="source:CACAO_Mariner_E637_scaffold_262 326 697" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 32072256..32072277 /note="source:CACAO_M_E22928_F10_scaffold_3 10 36" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 32072278..32074869 /note="source:CACAO_M_E44118_F74_scaffold_5 1 2592" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32077388..32077648 /note="source:scaffold_2_CACTA_0262 3321 3585" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32077781..32078232 /note="source:scaffold_2_CACTA_0262 3486 3927" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32078205..32078241 /note="source:scaffold_2_CACTA_0262 3765 3802" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32078324..32078799 /note="source:scaffold_2_CACTA_0262 4063 4604" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32078883..32079169 /note="source:scaffold_2_CACTA_0262 4862 5142" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(32079373..32079551) /note="source:scaffold_4_CACTA_0483 14857 15036" /mobile_element_type="transposon:TIR/CACTA" gene complement(32081217..32083042) /locus_tag="TCM_025352" /note="dbxref CacaoGD:Thecc1EG025352" mRNA complement(join(32081217..32081880,32082714..32083042)) /locus_tag="TCM_025352" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(join(32081625..32081880,32082714..32082997)) /locus_tag="TCM_025352" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09983.1" /translation="MGQKIDLFDLANGSQLILLRRCRIDLYGENGLYFAKSFFKQIAG NVGADQNLRKMIWANLASPQVEVLYWQVLKGKLVVSRGNNLTSQKLNNQMRVVRGCLG EAEISGVLKDNIRNIKILFSKSMGIVDSNLVEIVAIKEVFLLYTASSWACTYELIIEL DSSNVVKWSNMTHLLLHGG" mobile_element 32082397..32082765 /note="source:CACAO_Again_on_S_E217_scaffold_6 1 369" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(32082409..32082704) /note="source:CACAO_Again_on_S_E308_scaffold_10 420 725" /mobile_element_type="transposon:TIR/hAT" gene 32084575..32086852 /locus_tag="TCM_025353" /note="dbxref CacaoGD:Thecc1EG025353" mRNA join(32084575..32084836,32085419..32085541, 32086413..32086852) /locus_tag="TCM_025353" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025357t1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.28 coverage" CDS join(32084615..32084836,32085419..32085541, 32086413..32086544) /locus_tag="TCM_025353" /note="paralog of Thecc1EG025357t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09984.1" /translation="MSALSESDHSLIHSQTMEWLLSDDPIETTESHDISDWLILVRGA RVSSPIREGLNVHSGEQLRLLTKNLRQVIKVGSSAQQEKKEKRAKATLVGRNNTSFKL SDECIAHAMKFEEFLERIRTKQEKAKEMKCKTHDTDNGVHDVKQQYGKLPVVGFVV" gene 32085632..32088661 /locus_tag="TCM_025354" /note="dbxref CacaoGD:Thecc1EG025354" mRNA join(32085632..32085749,32085875..32086004, 32087878..32088066,32088268..32088661) /locus_tag="TCM_025354" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g04530.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025351t1" /inference="similar to AA sequence:Phytozome:GSVIVT01035071001" /note="quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.29 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc3204t1" CDS join(32085747..32085749,32085875..32086004, 32087878..32088066,32088268..32088563) /locus_tag="TCM_025354" /note="paralog of Thecc1EG025351t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09985.1" /db_xref="Phytozome:GSVIVT01035071001" /translation="MYFEHEKSKAKFRSVTEVIKFILHGAYPKNKQNSKQGKLEERSA VIMGVFTYESEVVTAIPPAKMFKACILDGDKLIPKIVPQAFKNVEYIEGNGEPGSIKK VTFGEGSQFNYMIEKVEALDKDNFVYSYSVIEGDALMKTLEKITYETKLEPSPAGGSI CKTTSKYYTIGDFEIKEEGIKAGKEKALGIFKAVEAYLLANPDAY" mobile_element complement(32087521..32088072) /note="source:CACAO_Mariner_E637_scaffold_262 769 1340" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(32088225..32088594) /note="source:CACAO_Mariner_E637_scaffold_262 326 698" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene complement(32088664..32092862) /locus_tag="TCM_025355" /note="dbxref CacaoGD:Thecc1EG025355" mRNA complement(join(32088664..32088889,32088985..32089380, 32089690..32089934,32092607..32092862)) /locus_tag="TCM_025355" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.37 coverage" CDS complement(join(32088802..32088889,32088985..32089380, 32089690..32089763)) /locus_tag="TCM_025355" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09986.1" /translation="MGFEMVEPLLGMPLVSGNAHYDMGSSTHGKSSPASCARGLQDSQ GHVKGVFYDPLGIQDSNVVELLAIYNALKLFAFTSSVGSYKLIVEIDSKVVISWVLEG VQRPWNAWRTFNAINRLCATIACIRFIHTSFREATTMAVVMKFGMDGEEMFYAWWIAF DVLIALTHVYVLVVSNNGSLFRHYF" mobile_element 32092285..32092553 /note="source:scaffold_2_CACTA_0262 3313 3585" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32092686..32093427 /note="source:scaffold_2_CACTA_0262 3486 4389" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32093604..32093974 /note="source:scaffold_2_CACTA_0262 4805 5142" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(32094976..32095318) /note="source:scaffold_4_CACTA_0483 14857 15235" /mobile_element_type="transposon:TIR/CACTA" gene complement(32095967..32097529) /locus_tag="TCM_025356" /note="dbxref CacaoGD:Thecc1EG025356" mRNA complement(join(32095967..32096775,32097470..32097529)) /locus_tag="TCM_025356" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.67 coverage" CDS complement(32096431..32096718) /locus_tag="TCM_025356" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09987.1" /translation="MLLVSTYENERIKEIMELKVKGRVYKLLRNKIQLIEKDAQVEEK NSIKNTENSPWEISSSKKLKGSGNEEEKRVDMSSMNEVEMIELVKLDCARK" mobile_element complement(32097790..32098134) /note="source:CACAO_Again_on_S_E308_scaffold_10 420 721" /mobile_element_type="transposon:TIR/hAT" mobile_element 32098388..32098477 /note="source:CACAO_M_S_E52027_F3_scaffold_5 3826 3918" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32098421..32098483) /note="source:CACAO_M_S_E52697_F28_scaffold_5 6059 6121" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32098439..32098504 /note="source:scaffold_1_CACTA_0011 7491 7555" /mobile_element_type="transposon:TIR/CACTA" gene 32099987..32101678 /locus_tag="TCM_025357" /note="dbxref CacaoGD:Thecc1EG025357" mRNA join(32099987..32100249,32100554..32100655, 32100832..32100954,32101043..32101678) /locus_tag="TCM_025357" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025353t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.45 coverage" CDS join(32100028..32100249,32100554..32100655, 32100832..32100954,32101043..32101171) /locus_tag="TCM_025357" /note="paralog of Thecc1EG025353t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09988.1" /translation="MSALSESDHSLIHSQTMEWLLSDDPIETTESHDISDWLILVRGA RVSSPIREGLNVHSGEQLRLLTKNLRQVIKYEVKMVKEKEEYQILNPTPISYHVSPEH ISLSQKVGSSAQQEKKEKRAKATLVGRNNTSFKLPDECIAHAMKFEEEKLQKLKDQKE KVCQYSLFERLEGWRIDRKKRPYGVNFDMVI" gene 32103102..32104002 /locus_tag="TCM_025358" /note="dbxref CacaoGD:Thecc1EG025358" mRNA join(32103102..32103364,32103566..32104002) /locus_tag="TCM_025358" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g04530.1.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025354t1" /inference="similar to AA sequence:Phytozome:GSVIVT01035071001" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS join(32103181..32103364,32103566..32103861) /locus_tag="TCM_025358" /note="paralog of Thecc1EG025354t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09989.1" /db_xref="Phytozome:GSVIVT01035071001" /translation="MGIFTYESEVVAAIPPAKMFKACILDGDNLIPKIVPQAFKNVEY IEGNGEPGSIKKVTFGEGSQFNYMIEKVEVLDKDNFVYSYSVIEGDALMNTLEKITYE TKLEPSPAGGSICKTTSKYYTIGDFEIKEEGIKAGKEKALGIFKAVEAYLLANPDAY" mobile_element 32107591..32108204 /note="source:CACAO_Mutator_E1998_scaffold_9 10429 11065" /mobile_element_type="transposon:TIR/Mutator" mobile_element 32108383..32108537 /note="source:CACAO_Mutator_E1998_scaffold_9 11076 11230" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(32109317..32109365) /note="source:CACAO_M_S_E15643_F163_scaffold_2 528 576" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(32110024..32110514) /note="source:CACAO_PIF_E119_scaffold_3 1805 2296" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 32110922..32112560 /locus_tag="TCM_025359" /note="dbxref CacaoGD:Thecc1EG025359" mRNA join(32110922..32111103,32111357..32111464, 32111640..32111765,32111854..32111979,32112098..32112223, 32112321..32112560) /locus_tag="TCM_025359" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025357t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.56 coverage" CDS join(32110972..32111103,32111357..32111464, 32111640..32111765,32111854..32111979,32112098..32112223, 32112321..32112407) /locus_tag="TCM_025359" /note="paralog of Thecc1EG025357t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09990.1" /translation="MSKNPMETSESPIDYAMWGIKERQDVHSGEQLRLLTTKLKQVIK QESKMVKEKENEILDPAPISYHIPIDYNYSIPLNPQFDPSVPQEKKEEKRAKATLVGR YNTSFKLSDDIIAQAMKYEEEKLRNSQHQNQNQKACQYSLYERLEGWRIDRKRRPNGT TFDIFFEHEKSKGKFRSVAEVISFILHEAYPKRQPNATQGKEENPQVPPGYEEPEKYP IPEHLGGPSSMAKSVI" gene 32113177..32115318 /locus_tag="TCM_025360" /note="dbxref CacaoGD:Thecc1EG025360" mRNA join(32113177..32113576,32114350..32115318) /locus_tag="TCM_025360" /product="Tudor/PWWP/MBT superfamily protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025375t1" /inference="similar to AA sequence:ricco:30073.m002228" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS join(32113419..32113576,32114350..32115103) /locus_tag="TCM_025360" /note="dbxref ricco:30073.m002228; paralog of Thecc1EG025375t1" /codon_start=1 /product="Tudor/PWWP/MBT superfamily protein" /protein_id="EOY09991.1" /db_xref="TAIR:AT3G03140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N119" /translation="MKEVDRLIIDKEALPLLESLSIGPIPKLEEVPSGIYHLKSLVNC NSMACQENLHALGWENHAAVKREWEDKVWHFDPVLAGHRHFGGRKRSMLIDADLKVQA GYQKEPVPIVSLMCKLDGKAIIGHPIQIDALEDSSTETLLSTNGYLSHGLVNHDGYTS LPPARRTTKRTNFRVPRPRPPSALGSYEADEYHSLDREGKPPFKKYKVGSSEHKAGLV KKSISHVPRSPTDRKFQREFPKKVGLSSSQKTRILSSIGMEQNLSSKTTRDRGNCQMH GLIKPDSSGPTTVAFVPVKLKMSSVNF" mobile_element complement(32121738..32122324) /note="source:scaffold_1_CACTA_0009 13257 13829" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32122036..32126024 /note="source:CACAO_M_E33977_F20_scaffold_4 5405 9331" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32125777..32126071 /note="source:CACAO_Mutator_E1410_scaffold_6 5707 6003" /mobile_element_type="transposon:TIR/Mutator" mobile_element 32126124..32126136 /note="source:CACAO_on_E193_scaffold_6 3416 3548" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(32126137..32126251) /note="source:scaffold_1_CACTA_0009 9424 9538" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(32126253..32126290) /note="source:CACAO_Mutator_E161_scaffold_1 5228 5266" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(32126260..32126307) /note="source:CACAO_Mutator_E161_scaffold_1 4050 4099" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(32126307..32126370) /note="source:CACAO_Mutator_E161_scaffold_1 5878 5947" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(32126359..32126473) /note="source:CACAO_on_E193_scaffold_6 11466 11580" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(32126529..32126982) /note="source:CACAO_Mutator_E1410_scaffold_6 5290 5713" /mobile_element_type="transposon:TIR/Mutator" mobile_element 32126560..32127312 /note="source:scaffold_9_CACTA_0922 1605 2140" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(32127711..32128540) /note="source:CACAO_Mutator_E1410_scaffold_6 4262 5060" /mobile_element_type="transposon:TIR/Mutator" mobile_element 32128542..32129854 /note="source:CACAO_M_E33977_F20_scaffold_4 10540 11847" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32129855..32132153) /note="source:CACAO_Mutator_E1888_scaffold_9 636 4366" /mobile_element_type="transposon:TIR/Mutator" mobile_element 32132155..32134912 /note="source:CACAO_M_E44120_F98_scaffold_5 1 2758" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32134913..32135689) /note="source:CACAO_Mutator_E1410_scaffold_6 91 749" /mobile_element_type="transposon:TIR/Mutator" mobile_element 32135391..32137059 /note="source:CACAO_M_E33977_F20_scaffold_4 14978 16543" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(32137657..32142344) /locus_tag="TCM_025365" /note="dbxref CacaoGD:Thecc1EG025365" mRNA complement(join(32137657..32138383,32140614..32140816, 32142245..32142344)) /locus_tag="TCM_025365" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s07300.1" /inference="similar to AA sequence:ricco:30073.m002223" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14413t1" CDS complement(join(32138047..32138383,32140614..32140816, 32142245..32142340)) /locus_tag="TCM_025365" /note="dbxref ricco:30073.m002223" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09992.1" /db_xref="TAIR:AT5G17210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPI1" /translation="MERKAIVLCNVVGFLGILSAVTGFAAEATRIQASQVKFISPTQC QYPRSPALGLGLTAAVALLIAQIIINSATGCICCKRTRQTWNSNWTKALVFYVVSWFT FVIAFLLLLTGSALNDQHGEESVYFGNYYCYVVKPGVFAGGAVLALASVTLGIFYYLT VNMAKDSTGPWGNAPVPNQGGIAMGQPQFPPQSSQDPVFVHEDTYIRRQFT" gene complement(32142581..32152715) /locus_tag="TCM_025366" /note="dbxref CacaoGD:Thecc1EG025366" mRNA complement(join(32142581..32142629,32148762..32149160, 32149486..32149554,32149696..32149777,32151708..32151874, 32151991..32152209,32152311..32152715)) /locus_tag="TCM_025366" /product="Rubredoxin family protein" /inference="alignment:exonerate- protein:2:ricco:30073.m002222" /inference="similar to AA sequence:ricco:30073.m002222" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14416t1" mobile_element 32145406..32145632 /note="source:CACAO_M_E44210_F112_scaffold_5 10001 10226" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 32145436..32145868 /note="source:CACAO_M_E69938_F9_scaffold_9 3600 4158" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32146242..32146586) /note="source:CACAO_M_E58877_F5_scaffold_9 19370 19725" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32146421..32146740 /note="source:CACAO_M_E44210_F112_scaffold_5 11402 12913" /mobile_element_type="retrotransposon:LTR/Copia" CDS complement(join(32148990..32149160,32149486..32149554, 32149696..32149777,32151708..32151874,32151991..32152209, 32152311..32152433)) /locus_tag="TCM_025366" /note="dbxref ricco:30073.m002222" /codon_start=1 /product="Rubredoxin family protein" /protein_id="EOY09993.1" /db_xref="TAIR:AT5G17170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2D1K7" /translation="MSSAVVAGASSSCSAALTSRNNSIKANPTPSPKAFTPYTSQKTA WQGLSLLEAKKGVSGFFLAERKSSFSSSHARRGLEITARTAGASRTIEVEVDKPLGLT LGQKQGGGVVITAVDGGGNAAKAGLKAGDQVLYTSSFFGDELWPADKLGFTKTAVQAK PDSVYFVVNRGAEVDVKRLTKRPAPPRFGRKLTEAQKARASHICLDCGYIYTAQKPFD EQPDTYACPQCRAPKKRFAKYDVNTGKAIGGGLPPIGVIIGLIAGVGAVGALLVYGLQ " gene 32154748..32158224 /locus_tag="TCM_025368" /note="dbxref CacaoGD:Thecc1EG025368" mRNA join(32154748..32154952,32155308..32155386, 32155833..32155935,32157069..32157332,32157697..32157808, 32157897..32158224) /locus_tag="TCM_025368" /product="Regulatory particle non-ATPase 12A isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g25730.2" /inference="similar to AA sequence:Phytozome:Glyma05g25730.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g04805t00001; inference alignment:Newbler:10:TSA:cgbaP1_g04805t00001" CDS join(32154848..32154952,32155308..32155386, 32155833..32155935,32157069..32157332,32157697..32157808, 32157897..32158037) /locus_tag="TCM_025368" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Regulatory particle non-ATPase 12A isoform 1" /protein_id="EOY09994.1" /db_xref="Phytozome:Glyma05g25730.2" /db_xref="TAIR:AT1G64520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SGW3" /translation="MDPQLTEVSQLFERFKAAFIRNDYDSCANLLSQLKVLLTKFRSL PPLFENTPNAINELLLAREIYEHAVVLSVKIEDQDAFERDFFQLKPYYTDAGSRLPPS PQEYPILGLNLLRLLVQNRIAEFHTELELLSATALENPCIKHAVELEQSFMEGAYNRV LSARQTAPHETYVYFMDLLAKTVRDEIAGCSEKAYDYLSIDDARQMLLFSFDQELLEY IKEEHPEWEVKNGFVFLQKAKESAPCKEIPSLQLINQTLSYARELERIV" mRNA join(<32155868..32155935,32157066..32157332, 32157697..32157808,32157897..>32158033) /locus_tag="TCM_025368" /product="Regulatory particle non-ATPase 12A isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g25730.2" /inference="similar to AA sequence:Phytozome:GSVIVT01019594001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is weak, protein is partial; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc5903t2; inference alignment:Newbler:10:TSA:cgbaP1_g04805t00001" CDS join(<32155868..32155935,32157066..32157332, 32157697..32157808,32157897..>32158031) /locus_tag="TCM_025368" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Regulatory particle non-ATPase 12A isoform 2" /protein_id="EOY09995.1" /db_xref="Phytozome:GSVIVT01019594001" /db_xref="TAIR:AT1G64520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SGW3" /translation="KIEDQDAFERDFFQLKPYYTDAGSSRLPPSPQEYPILGLNLLRL LVQNRIAEFHTELELLSATALENPCIKHAVELEQSFMEGAYNRVLSARQTAPHETYVY FMDLLAKTVRDEIAGCSEKAYDYLSIDDARQMLLFSFDQELLEYIKEEHPEWEVKNGF VFLQKAKESAPCKEIPSLQLINQTLSYARELERI" gene 32160909..32163509 /locus_tag="TCM_025370" /note="dbxref CacaoGD:Thecc1EG025370" mRNA join(32160909..32161062,32161217..32161384, 32163002..32163509) /locus_tag="TCM_025370" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30073.m002221" /inference="similar to AA sequence:ricco:30073.m002221" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaL_g10158t00001" CDS join(32161058..32161062,32161217..32161384, 32163002..32163260) /locus_tag="TCM_025370" /note="dbxref ricco:30073.m002221" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY09996.1" /db_xref="TAIR:AT3G03150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N117" /translation="MHCLFFWYMAANWKSGGGIASLGKRLLDRSSTRHPTHFNATTTP SQPAAAAAVAVAIRGAHASAYDKNLDDQVRPTVVPDDVIKPQSDKYWAPHPQTGVFGP ATELKASAGGERANVAVDSVLEEKAWFRPTSIEDLEKPHHT" mobile_element complement(32163730..32164736) /note="source:scaffold_1_CACTA_0016 1415 2484" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32164736..32165171 /note="source:CACAO_PIF_E144_scaffold_10 1203 1632" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 32165163..32165484 /note="source:scaffold_8_CACTA_0858 14201 14518" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(32165718..32165822) /note="source:scaffold_8_CACTA_0858 14194 14297" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32165798..32166365 /note="source:CACAO_PIF_E144_scaffold_10 1619 2391" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(32167964..32172147) /locus_tag="TCM_025371" /note="dbxref CacaoGD:Thecc1EG025371" mRNA complement(join(32167964..32169109,32169531..32169633, 32169950..32170102,32170728..32171971,32172058..32172147)) /locus_tag="TCM_025371" /product="Pentatricopeptide repeat-containing protein, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:30073.m002219" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034374t2" /inference="similar to AA sequence:ricco:30073.m002219" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1888t3_C1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1854t7" mRNA complement(join(32168052..32169109,32169531..32169802, 32169950..32170102,32170728..32171971,32172058..32172144)) /locus_tag="TCM_025371" /product="Pentatricopeptide repeat-containing protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30073.m002219" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034374t1" /inference="similar to AA sequence:ricco:30073.m002219" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:PASA:2:TSA:puevd3b024534t1a2; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1854t7" mRNA complement(join(32168052..32169109,32169531..32170102, 32170728..32171971,32172058..32172144)) /locus_tag="TCM_025371" /product="Pentatricopeptide repeat-containing protein, putative isoform 4" /inference="alignment:exonerate- protein:2:ricco:30073.m002219" /inference="similar to AA sequence:ricco:30073.m002219" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:PASA:2:TSA:puevd3b024534t1a3; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1854t7" mRNA complement(join(32168314..32169109,32169531..32169633, 32169731..32169802,32169950..32170102,32170728..32171971, 32172058..32172144)) /locus_tag="TCM_025371" /product="Pentatricopeptide repeat-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30073.m002219" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034374t2" /inference="similar to AA sequence:ricco:30073.m002219" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1854t7" CDS complement(join(32169108..32169109,32169531..32169633, 32169950..32170102,32170728..32171939)) /locus_tag="TCM_025371" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30073.m002219; paralog of Thecc1EG034374t2" /codon_start=1 /product="Pentatricopeptide repeat-containing protein, putative isoform 3" /protein_id="EOY09999.1" /db_xref="TAIR:AT5G42310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S1X9" /translation="MKFTWQCKMHLTSSVPLLTHGSCFRLGLNHSHLKFICCSRMDNY KRLKQGALTEFNKKNPIFKYPFGSNSGEELTSELHNQAIQGYCKIGDVDNAMKLVAHM EAMGFHPNSISYGFLIESLGSVGRTLEADALFQEMICLGLKPRIRLFNVLLKGFLRKG LLRLAVKVLVVMDERGVCKNQETYEILLDYYVNAGRLEDTWMVVNEMKEKGIHLNSFV YSKIICLYRDNGMWRKAIGIVEEIREKGISLDRQIYNSIIDTFGKYGELSEALEVFEK MKQESIRPDITTWNSLIQWHCKAGDLTKALELFTEMQEQGLYPDPKIFMSLISRLGEL GKWDIIKKNFENMKSRGHQDVGAIYAILVDIYGQYGRFQDAEVCISALKSEGLLPSAS MFCVLANAYAQQGFCEQTVKVLQIMEAEGIEPNIVMLNVLINAFGIAGRHEEALSIYH HIRDSVPEIYREMESSGCTPDRKARQMLQTALMVLEQRH" CDS complement(join(32169108..32169109,32169531..32169633, 32169731..32169802,32169950..32170102,32170728..32171939)) /locus_tag="TCM_025371" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30073.m002219; paralog of Thecc1EG034374t2" /codon_start=1 /product="Pentatricopeptide repeat-containing protein, putative isoform 1" /protein_id="EOY09997.1" /db_xref="TAIR:AT5G42310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S1X9" /translation="MKFTWQCKMHLTSSVPLLTHGSCFRLGLNHSHLKFICCSRMDNY KRLKQGALTEFNKKNPIFKYPFGSNSGEELTSELHNQAIQGYCKIGDVDNAMKLVAHM EAMGFHPNSISYGFLIESLGSVGRTLEADALFQEMICLGLKPRIRLFNVLLKGFLRKG LLRLAVKVLVVMDERGVCKNQETYEILLDYYVNAGRLEDTWMVVNEMKEKGIHLNSFV YSKIICLYRDNGMWRKAIGIVEEIREKGISLDRQIYNSIIDTFGKYGELSEALEVFEK MKQESIRPDITTWNSLIQWHCKAGDLTKALELFTEMQEQGLYPDPKIFMSLISRLGEL GKWDIIKKNFENMKSRGHQDVGAIYAILVDIYGQYGRFQDAEVCISALKSEGLLPSAS MFCVLANAYAQQGFCEQTVKVLQIMEAEGIEPNIVMLNVLINAFGIAGRHEEALSIYH HIRDSGISPDVITYSTLMKAFIRAKKFDRVPEIYREMESSGCTPDRKARQMLQTALMV LEQRH" CDS complement(join(32169704..32169802,32169950..32170102, 32170728..32171939)) /locus_tag="TCM_025371" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30073.m002219; paralog of Thecc1EG034374t1" /codon_start=1 /product="Pentatricopeptide repeat-containing protein, putative isoform 2" /protein_id="EOY09998.1" /db_xref="TAIR:AT5G42310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S1X9" /translation="MKFTWQCKMHLTSSVPLLTHGSCFRLGLNHSHLKFICCSRMDNY KRLKQGALTEFNKKNPIFKYPFGSNSGEELTSELHNQAIQGYCKIGDVDNAMKLVAHM EAMGFHPNSISYGFLIESLGSVGRTLEADALFQEMICLGLKPRIRLFNVLLKGFLRKG LLRLAVKVLVVMDERGVCKNQETYEILLDYYVNAGRLEDTWMVVNEMKEKGIHLNSFV YSKIICLYRDNGMWRKAIGIVEEIREKGISLDRQIYNSIIDTFGKYGELSEALEVFEK MKQESIRPDITTWNSLIQWHCKAGDLTKALELFTEMQEQGLYPDPKIFMSLISRLGEL GKWDIIKKNFENMKSRGHQDVGAIYAILVDIYGQYGRFQDAEVCISALKSEGLLPSAS MFCVLANAYAQQGFCEQTVKVLQIMEAEGIEPNIVMLNVLINAFGIAGRHEEALSIYH HIRDSGISPDVITYSTLMKAFIRAKKFDRVVTVIEFS" CDS complement(join(32169881..32170102,32170728..32171939)) /locus_tag="TCM_025371" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30073.m002219" /codon_start=1 /product="Pentatricopeptide repeat-containing protein, putative isoform 4" /protein_id="EOY10000.1" /db_xref="TAIR:AT5G42310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S1X9" /translation="MKFTWQCKMHLTSSVPLLTHGSCFRLGLNHSHLKFICCSRMDNY KRLKQGALTEFNKKNPIFKYPFGSNSGEELTSELHNQAIQGYCKIGDVDNAMKLVAHM EAMGFHPNSISYGFLIESLGSVGRTLEADALFQEMICLGLKPRIRLFNVLLKGFLRKG LLRLAVKVLVVMDERGVCKNQETYEILLDYYVNAGRLEDTWMVVNEMKEKGIHLNSFV YSKIICLYRDNGMWRKAIGIVEEIREKGISLDRQIYNSIIDTFGKYGELSEALEVFEK MKQESIRPDITTWNSLIQWHCKAGDLTKALELFTEMQEQGLYPDPKIFMSLISRLGEL GKWDIIKKNFENMKSRGHQDVGAIYAILVDIYGQYGRFQDAEVCISALKSEGLLPSAS MFCVLANAYAQQGFCEQTVKVLQIMEAEGIEPNIVMLNVLINAFGIAGRHEEALSIYH HIRDSVSPLCYAWIWVNLINFVCVFLG" gene 32172262..32179575 /locus_tag="TCM_025372" /note="dbxref CacaoGD:Thecc1EG025372" mRNA join(32172262..32175990,32176090..32176290, 32177147..32177237,32178355..32179575) /locus_tag="TCM_025372" /product="Pentatricopeptide repeat (PPR) superfamily protein" /inference="alignment:exonerate-protein:2:frave:gene06739" /inference="similar to AA sequence:frave:gene06739" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1382t1" CDS join(32172425..32175990,32176090..32176290, 32177147..32177237,32178355..32178873) /locus_tag="TCM_025372" /note="dbxref frave:gene06739" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein" /protein_id="EOY10001.1" /db_xref="TAIR:AT3G18110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5G1S8" /translation="MATSCTGGLVPFASPSSKVCKNTSVSCSSSRHSTPLPTEQANDS NINNSSSNNKFSYGRASPSERWPHLQLQLAETYPLSQTHFSATPPQLTHAVKEVELSL ESSTSESLEVNDETQEKLGRVSKTRVKKMTKLALKRAKDWRERVKFLTDRILGLEQDQ FVADVLDDRKVQMTPTDFCFVVKLVGQENWQRALEVYEWLNLRHWYSPNARMLATILA VLGKANQGVLAVEIFTRAEPAVGNTVQVYNAMMGVYARNGRFQKVQELLDLMRERGCE PDLVSFNTLINAKLKAGAMLPDLGVELLNEVRRSGLRPDIITYNTLISACSRESNLEE AMKVFDDMDGHNCQPDIWTYNAMISVYGRCGMAYKAEQLFRDLESKGFFPDAVTYNSL LYAFAREGNVDKVKEICEEMVEIGLGKDEMTYNTIIHMYGKQGQHDLALQLYRDMKLS GRNPDVVTYTVLIDSLGKANKIKEASNVMSEMLDVGVKPTVRTYSALICGYAKAGMAV EAEETFNCMRRSGIRLDFLAYSVMLDILLRCNKTTKALLLYREMVRDGFTPDHTLYEV MLQALRKENKLEDIEKMVRDMEELCGMNPQAISSFLVKGECYDLAAQMLRLGISNGDE LDGENLLSVLSSYSSSGRHKEACELLEFLKEHAEGYNQLITEALVVMLCEACQVDAAL KEYSNAKDSVFFSSSTMFASLIQCCEENELLTEASQIFSDMRFFGVEPSECIFKGMVK VYCKMGFPETAHCLINQAEMKDILLENSFIYVDVIEAYGKLKLWQKAESVVGNVRQKY VTVDRKVWNALIQAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLEALIVDGRLNE LYVVIQELQDMGFKMSKSSILLMLDAFAQAGNIFEVKKIYSGMKAAGYYPTMHLYRIM TRLFCKGKRVRDAEAMVSEMEEAGFKPDLSIWNSMLKLYSGIEDYKKTAQIYQQIKEA GLEPDEDTYNTLIIMYCRDRRPEEGLSLMYEMRKVGLEPKLDTYKSLISAFGKQQLLE QAEELFNELHSKCYKLDRSFYHTMMKIFRNAGNHSKAESLLSMMKEAGVEPTIATMHL LMVSYGSSGQPQEAEKVLTSLKETGLNLTTLPYSSVINAYLRNGDYNVGIQKLMEMKK EGLAVDHRIWTCFIRAASLSNHTSEAIILLNALRDAGFDLPIRLMTEKSELLLSEVES CLEKLEPIGDDAAFNFVNALEDLLWAFELRATASWVFQLAVKKTIYHHHVFRVADKDW GADFRKLSAGSALVALTLWLDRMQDAALQGYPESPKSVVLITGTAEYNMVSLNYTLKA CLWEMGSPFLPCKTRSGLLVAKAHSLRMWLKDSPFCLDLELKDAPSLPELNSMQLVEG CFMRRGLVPAFKDITERLGLVRPKKFARLALLSDDRREKAIQADIQGGKEKLEKLKTK VGYKGARNIKKLRKRKFIRRPL" gene 32179622..32182999 /locus_tag="TCM_025373" /note="dbxref CacaoGD:Thecc1EG025373" mRNA join(32179622..32180212,32180298..32180351, 32181308..32181433,32182366..32182999) /locus_tag="TCM_025373" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma12g00440.1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400019767" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc328t1" CDS join(32179844..32180212,32180298..32180351, 32181308..32181433,32182366..32182545) /locus_tag="TCM_025373" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10002.1" /db_xref="Phytozome:PGSC0003DMP400019767" /db_xref="TAIR:AT2G44870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H1X0" /translation="MATALPSTAWHTIKLQPQSPLPLRRRPLLIQSFRRSDFDTFARR MASGEAWKDAWRTANDGFEQFVFEAKKTAERLDRRYSVSRRVSSVVRSATDRAREIDR ELEIGLRWRTFTMDFSRNWPTYRKQLNDFLDTPLGRSFATIFFLWFALSGWLFRFLIL ATWILPFAGPLLIGAVANNLVIKGACPACKRQFVGYKNQIIRCASCGNIVWQPEGDFF RRDSRGTNSRKSEPEIIDVEFEEK" gene 32183097..32184291 /locus_tag="TCM_025374" /note="dbxref CacaoGD:Thecc1EG025374" mRNA join(32183097..32183413,32183505..32184291) /locus_tag="TCM_025374" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage" CDS 32183518..32183709 /locus_tag="TCM_025374" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10003.1" /translation="MGLWREMEDQLRVLKKKGTKMVSEILGKKKRWLSEIECTLPSSR SRLLVSLGPVAWIVGFILA" gene complement(32184304..32190592) /locus_tag="TCM_025375" /note="dbxref CacaoGD:Thecc1EG025375" mRNA complement(join(32184304..32185974,32187025..32187327, 32187503..32188056,32189821..32190592)) /locus_tag="TCM_025375" /product="Tudor/PWWP/MBT superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s07270.1" /inference="similar to AA sequence:ricco:30073.m002228" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc877t7_C2" CDS complement(join(32184677..32185974,32187025..32187327, 32187503..32188056,32189821..32189999)) /locus_tag="TCM_025375" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30073.m002228" /codon_start=1 /product="Tudor/PWWP/MBT superfamily protein, putative isoform 1" /protein_id="EOY10004.1" /db_xref="TAIR:AT3G03140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HEG8" /translation="MESGAGSDGGGVGSIVWVRRRNGSWWPGKILGPDELPASHLTSP RTGTPVKLLGREDASVDWYNLEKSKRVKAFRCGEFDDCIERAESSQGMPPKKREKYAR REDAILHALELEKELLRKQGKLDRPSDARSKSSGSAKKDSGGSDISNGKPGNSKSNQS RSQDTSIKGEIVSSPRHLKKDQVGNPIWENDHSENIPRMRGLQDLGLKTACAKQKPTS FGALDVDCTLSPSSRVSSMGRTTHINGGEQMGGASRAKRSRCMYLPAESFDALDYKEV PANQIEMSPSRFVECDSYPFPSHLIEDNTREFLEDIESGSSESASSESESESDSSETE PDMDEDITSLSGATVRMDTRLGAFQRPDTLGSGSVGLEESDESSLSGEMPHFYSHDHL SVHEAVSKWQLKGKRNIRNLAKRSMDAAEIRGYDGPAHGIYHEERGTFRQRLLGQSSR RNHDFDDDVDVAGLSAKDFGTQMVGFDGRGYSRTARDSSRSRNSFNRNVIDWEGMPWE NHAAVKREWEDKVWHFDPVFAGHRNFGGRKRSMLIDVDLKVQAGYQKEPVPIVSLMSK LDGKAIIGHPIQIEALQDSSTETLLPTNGYFSNGIINHDGNTSLPPAWRTAKRTNFRV PRPHPPFALGSYEAAEYHSLDHEGKPSFKKYNVGSSEYKAGLVKKSISHVPRSPTDRK FQRKFPKKVSLSSSQKTRTLSSIGIEQNLSSKTTHDSGNCQMDGLIKPESSGPTTVAC IPVKLVFSRLLEKINRPPSKAASKAILSTSDVVRDPS" mRNA complement(join(<32184681..32185974,32187025..32187327, 32187503..32188056,32189817..32190136)) /locus_tag="TCM_025375" /product="Tudor/PWWP/MBT superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s07270.1" /inference="similar to AA sequence:ricco:30073.m002228" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc885t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc877t7_C2" CDS complement(join(<32184683..32185974,32187025..32187327, 32187503..32188056,32189817..32189977)) /locus_tag="TCM_025375" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30073.m002228" /codon_start=1 /product="Tudor/PWWP/MBT superfamily protein, putative isoform 2" /protein_id="EOY10005.1" /db_xref="TAIR:AT3G03140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HEG8" /translation="MEGVSGRSCGYAGGTVHGGRERYWGPTSCRRLILRLRGPGLRSN FLAERMPACSDWYNLEKSKRVKAFRCGEFDDCIERAESSQGMPPKKREKYARREDAIL HALELEKELLRKQGKLDRPSDARSKSSGSAKKDSGGSDISNGKPGNSKSNQSRSQDTS IKGEIVSSPRHLKKDQVGNPIWENDHSENIPRMRGLQDLGLKTACAKQKPTSFGALDV DCTLSPSSRVSSMGRTTHINGGEQMGGASRAKRSRCMYLPAESFDALDYKEVPANQIE MSPSRFVECDSYPFPSHLIEDNTREFLEDIESGSSESASSESESESDSSETEPDMDED ITSLSGATVRMDTRLGAFQRPDTLGSGSVGLEESDESSLSGEMPHFYSHDHLSVHEAV SKWQLKGKRNIRNLAKRSMDAAEIRGYDGPAHGIYHEERGTFRQRLLGQSSRRNHDFD DDVDVAGLSAKDFGTQMVGFDGRGYSRTARDSSRSRNSFNRNVIDWEGMPWENHAAVK REWEDKVWHFDPVFAGHRNFGGRKRSMLIDVDLKVQAGYQKEPVPIVSLMSKLDGKAI IGHPIQIEALQDSSTETLLPTNGYFSNGIINHDGNTSLPPAWRTAKRTNFRVPRPHPP FALGSYEAAEYHSLDHEGKPSFKKYNVGSSEYKAGLVKKSISHVPRSPTDRKFQRKFP KKVSLSSSQKTRTLSSIGIEQNLSSKTTHDSGNCQMDGLIKPESSGPTTVACIPVKLV FSRLLEKINRPPSKAASKAILSTSDVVRDP" mobile_element complement(32190750..32190855) /note="source:CACAO_on_SS_E42_scaffold_2 3139 3245" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(32191958..32192007) /note="source:CACAO_MITE_S250_scaffold_10 896 946" /mobile_element_type="transposon:TIR/MITE" mobile_element 32192070..32192156 /note="source:scaffold_6_CACTA_0706 1119 1209" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32193067..32193181 /note="source:CACAO_M_E23991_F4_scaffold_4 1858 1988" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 32193088..32193266 /note="source:CACAO_Again_on_E114_scaffold_4 249 427" /mobile_element_type="transposon:TIR/hAT" gene 32193532..32194272 /locus_tag="TCM_025377" /note="dbxref CacaoGD:Thecc1EG025377" mRNA 32193532..32194272 /locus_tag="TCM_025377" /product="Uncharacterized protein" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.24 coverage" CDS 32193768..32194232 /locus_tag="TCM_025377" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10006.1" /translation="MLHGLKFNSNVALFVRDGEAMMVASFVVGNFTSGVVLMDAKRML HNSCVYEVELRAVTWAVMMCLESNIMLDEIEVNNLLMAGWISSKNFKGASGLLLKDCV VLLEGMATQIVKHVLRKSNMVAHLVAKFAKDMPINQSIWKDASLIPICLEIL" gene 32194992..32200182 /locus_tag="TCM_025378" /note="dbxref CacaoGD:Thecc1EG025378" mRNA join(32194992..32195219,32195758..32196298, 32196400..32196666,32196795..32197888,32198000..32198500) /locus_tag="TCM_025378" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30073.m002230" /inference="similar to AA sequence:Phytozome:POPTR_0019s06950.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7939t1" mRNA join(32195058..32195219,32195758..32196298, 32196400..32196666,32196795..32197888,32198000..32198136, 32199956..32200182) /locus_tag="TCM_025378" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30073.m002230" /inference="similar to AA sequence:Phytozome:POPTR_0019s06950.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc495t4; alternateUTRof:Thecc1EG025378t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7939t1" CDS join(32195106..32195219,32195758..32196298, 32196400..32196666,32196795..32197888,32198000..32198080) /locus_tag="TCM_025378" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY10007.1" /db_xref="Phytozome:POPTR_0019s06950.1" /db_xref="TAIR:AT3G03130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S1Z0" /translation="MDFHCLPRKELQTLCKKNKIPANITNVAMADALKALEIVEGLDE FMNQSQSPEKTMNKSSQEIPSTVTRTSTRRKPTKEEPQSSQTTTRTRRITRRTMELDE ENKNVNVPETPVVATTTSRRAQRTEPEVEEQKKSDLLETPALQSNRRRAGVGSTRRKV EAQKDEGSVQQGYGTRRSVRLLEKCMEGLSLKESGRMEPVKIDEMVEDEIEENKNRQS GATSEENLARNLSVSLEGERDLKDDVHNAENDCTVISEAGSQEPDNLDCLLALDTKDA SPDEKTDESDAYLAEGADKLADMSDGTIDPKGYDDAVPEDSYEIDNSSEELVAENNGG SHADENTEVLDHASSAEYVEPKEAVIGEECQKLVGKDCDINVVNDDLAKLPEAEEYDD AKASQNASAIPEGFMDSLEKLGNEESEDDPDQIVAVSNIVDSDIDDNSGSDNNTLVDE QEEVPCETAAYCSDDPMSSMVNEEALIDVNVAEAEIIHVGETSIYNAPQSVAVDISVD QILDYGDAEALVDVCVKAAEEFAETTQEVPPLEKSPTAAKLMSPCASLVFNSAITSSI PLSPLTAQFSQPTRFTPRKSSSKKQTTIPKMTQVSDNNKENIDNNSEKEVEPSLAKVK KNKNIIDEETMQKLEDMSLRTLKKLTKKFDKLKIADHKKNKEDKNDSKSFGKTRPALQ ILSQNCIPAGEAEEEN" CDS join(32195106..32195219,32195758..32196298, 32196400..32196666,32196795..32197888,32198000..32198080) /locus_tag="TCM_025378" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY10008.1" /db_xref="Phytozome:POPTR_0019s06950.1" /db_xref="TAIR:AT3G03130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S1Z0" /translation="MDFHCLPRKELQTLCKKNKIPANITNVAMADALKALEIVEGLDE FMNQSQSPEKTMNKSSQEIPSTVTRTSTRRKPTKEEPQSSQTTTRTRRITRRTMELDE ENKNVNVPETPVVATTTSRRAQRTEPEVEEQKKSDLLETPALQSNRRRAGVGSTRRKV EAQKDEGSVQQGYGTRRSVRLLEKCMEGLSLKESGRMEPVKIDEMVEDEIEENKNRQS GATSEENLARNLSVSLEGERDLKDDVHNAENDCTVISEAGSQEPDNLDCLLALDTKDA SPDEKTDESDAYLAEGADKLADMSDGTIDPKGYDDAVPEDSYEIDNSSEELVAENNGG SHADENTEVLDHASSAEYVEPKEAVIGEECQKLVGKDCDINVVNDDLAKLPEAEEYDD AKASQNASAIPEGFMDSLEKLGNEESEDDPDQIVAVSNIVDSDIDDNSGSDNNTLVDE QEEVPCETAAYCSDDPMSSMVNEEALIDVNVAEAEIIHVGETSIYNAPQSVAVDISVD QILDYGDAEALVDVCVKAAEEFAETTQEVPPLEKSPTAAKLMSPCASLVFNSAITSSI PLSPLTAQFSQPTRFTPRKSSSKKQTTIPKMTQVSDNNKENIDNNSEKEVEPSLAKVK KNKNIIDEETMQKLEDMSLRTLKKLTKKFDKLKIADHKKNKEDKNDSKSFGKTRPALQ ILSQNCIPAGEAEEEN" gene 32199822..32201343 /locus_tag="TCM_025379" /note="dbxref CacaoGD:Thecc1EG025379" mRNA join(32199822..32200215,32200330..32201343) /locus_tag="TCM_025379" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.48 coverage" CDS join(32200022..32200215,32200330..32200417) /locus_tag="TCM_025379" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10009.1" /translation="MREKLAWPKMHDYMVINEKASVDELVPQKAKVKEKHQNCIIQDV ILKEEIMSLHEESNDVSQQVCHNLRASKGLYQANFALPFPSAELNPTIP" gene complement(32200421..32203399) /locus_tag="TCM_025380" /note="dbxref CacaoGD:Thecc1EG025380" mRNA complement(join(32200421..32201134,32202001..32202053, 32202377..32202456,32203163..32203399)) /locus_tag="TCM_025380" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29805.m001556" /inference="similar to AA sequence:frave:gene23935" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc199t2" CDS complement(join(32201055..32201134,32202001..32202053, 32202377..32202456,32203163..32203276)) /locus_tag="TCM_025380" /note="dbxref frave:gene23935" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10010.1" /db_xref="TAIR:AT1G05205.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ILZ9" /translation="MSETRPVPRRESPWGLPEGEHRQPKAHRCNDRAEDVIQACFEGN PFKTVPGPFKLFWQCMRSKPGEEPTEPYTYLQLDPPKREACSQGPVNMASVMCSVGST CLYKWR" gene complement(32203536..32240766) /locus_tag="TCM_025381" /note="dbxref CacaoGD:Thecc1EG025381" mRNA complement(join(32203536..32204329,32204433..32204605, 32205767..32205952,32209232..32209327,32209894..32210022, 32210123..32210305,32210394..32210504,32212740..32212886, 32212965..32213066,32213869..32214036,32214114..32214348, 32214662..32214789,32214945..32215040,32215121..32215216, 32215298..32215371,32215482..32215554,32215805..32215914, 32216026..32216164,32216361..32216470,32216560..32216689, 32216770..32216950,32217249..32217407,32217492..32217605, 32217883..32218062,32218537..32219157,32240279..32240404, 32240419..32240766)) /locus_tag="TCM_025381" /product="WD-40 repeat protein-like isoform 1" /inference="alignment:exonerate- protein:2:ricco:30073.m002232.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027305t4" /inference="similar to AA sequence:ricco:30073.m002232" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8168t1" mRNA complement(join(32203733..32204326,32204433..32204605, 32205767..32205952,32209232..32209327,32209894..32210022, 32210123..32210305,32210394..32210504,32212740..32212886, 32212965..32213066,32213869..32214036,32214114..32214348, 32214662..32214789,32214945..32215040,32215121..32215216, 32215298..32215371,32215482..32215554,32215805..32215914, 32216026..32216164,32216361..32216470,32216560..32216689, 32216770..32216950,32217249..32217407,32217492..32217605, 32217883..32218062,32218537..32218952)) /locus_tag="TCM_025381" /product="WD-40 repeat protein-like isoform 2" /inference="alignment:exonerate- protein:2:ricco:30073.m002232.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027305t4" /inference="similar to AA sequence:ricco:30073.m002232" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8168t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8168t1" CDS complement(join(32204116..32204326,32204433..32204605, 32205767..32205952,32209232..32209327,32209894..32210022, 32210123..32210305,32210394..32210504,32212740..32212886, 32212965..32213066,32213869..32214036,32214114..32214348, 32214662..32214789,32214945..32215040,32215121..32215216, 32215298..32215371,32215482..32215554,32215805..32215914, 32216026..32216164,32216361..32216470,32216560..32216689, 32216770..32216950,32217249..32217407,32217492..32217605, 32217883..32218062,32218537..32218616)) /locus_tag="TCM_025381" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30073.m002232; paralog of Thecc1EG027305t4" /codon_start=1 /product="WD-40 repeat protein-like isoform 2" /protein_id="EOY10012.1" /db_xref="TAIR:AT1G15750.4" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7EYE2" /translation="MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQ VQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLK VFASFNEELFKEITQLLTLDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDK LTFPAFKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCSPSTNGARPPPPTN SPLVGPIPKAGAFPPIGAHGPFQPVVSPSSGAIAGWMSSGNPSLPHAAAVAAGPPGLV QPSSAAAFLKHPRTPSGMPGMDYQSADSEQLMKRIRTGQSDEVSFAGIAHTPNVDSQD DLPKTVVRALNQGTNVMSMDFHPQHQTILLVGTNVGDISLWEVGSRERLADKPFKVWD ISTASMPLQTALVNDAGISVNRCVWSPSDGHMLGVAFSKHIVQIYLYNPTGELRQHLE IDAHVGGVNDIAFAQPNKQLCIVTCGDDKMIKVWDTVAGRRHYMFESHEAPVYSVCPH YKENIQFIFSTAIDGKIKAWLYDCLGSRVDYDAPGQWCTTMAYSTDGTRLFSCGTSKE GESHLVEWNESEGAIKRRYAGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNTTM LTAVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGSRLIRMLESRAVDKIR GPSEPVNSKPLIVNALGPMGNAAIAPALERPDRGPPVVSITSLSTMDSSRLVDVKPRI SDDADKIKGWRIPDIMDPSHLKALRLPDAITAGKVVRLLYTNSGLALLALASNAVHKL WKWQRSDRNPSGKATANVAPQLWQPPSGTLMTNDINDTKPAEESATCIALSKNDSYVM SASGGKVSLFNMMTFKVMTTFMSPPPAATYLAFHPQDNNIIAIGMEDSTIQIYNVRVD EVKTKLKGHQNRITGLAFSQTLNSLVSSGADAQLCVWSIDGWEKKKSRFIQAPSGRQS PLSGETKVQFHNDQTHLLVVHESQIAIYDSKLECLCSWSPKDSLSAPISSAIYSCDGS LIYAGFCDGAVGVFDSDNLRLRCRIAPSAYIPSFSVSNSAYAVVIAAHPSEPNQIALG MSDGAVHVVEPSDVELKWGTAPSQDNGPLPSSSSNPSLSGQPTELPSR" CDS complement(join(32204116..32204329,32204433..32204605, 32205767..32205952,32209232..32209327,32209894..32210022, 32210123..32210305,32210394..32210504,32212740..32212886, 32212965..32213066,32213869..32214036,32214114..32214348, 32214662..32214789,32214945..32215040,32215121..32215216, 32215298..32215371,32215482..32215554,32215805..32215914, 32216026..32216164,32216361..32216470,32216560..32216689, 32216770..32216950,32217249..32217407,32217492..32217605, 32217883..32218062,32218537..32218616)) /locus_tag="TCM_025381" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30073.m002232; paralog of Thecc1EG027305t4" /codon_start=1 /product="WD-40 repeat protein-like isoform 1" /protein_id="EOY10011.1" /db_xref="TAIR:AT1G15750.4" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7EYE2" /translation="MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQ VQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLK VFASFNEELFKEITQLLTLDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDK LTFPAFKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCSPSTNGARPPPPTN SPLVGPIPKAGAFPPIGAHGPFQPVVSPSSGAIAGWMSSGNPSLPHAAAVAAGPPGLV QPSSAAAFLKHPRTPSGMPGMDYQSADSEQLMKRIRTGQSDEVSFAGIAHTPNVDSQD DLPKTVVRALNQGTNVMSMDFHPQHQTILLVGTNVGDISLWEVGSRERLADKPFKVWD ISTASMPLQTALVNDAGISVNRCVWSPSDGHMLGVAFSKHIVQIYLYNPTGELRQHLE IDAHVGGVNDIAFAQPNKQLCIVTCGDDKMIKVWDTVAGRRHYMFESHEAPVYSVCPH YKENIQFIFSTAIDGKIKAWLYDCLGSRVDYDAPGQWCTTMAYSTDGTRLFSCGTSKE GESHLVEWNESEGAIKRRYAGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNTTM LTAVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGSRLIRMLESRAVDKIR GPSEPVNSKPLIVNALGPMGNAAIAPALERPDRGPPVVSITSLSTMDSSRLVDVKPRI SDDADKIKGWRIPDIMDPSHLKALRLPDAITAGKVVRLLYTNSGLALLALASNAVHKL WKWQRSDRNPSGKATANVAPQLWQPPSGTLMTNDINDTKPAEESATCIALSKNDSYVM SASGGKVSLFNMMTFKVMTTFMSPPPAATYLAFHPQDNNIIAIGMEDSTIQIYNVRVD EVKTKLKGHQNRITGLAFSQTLNSLVSSGADAQLCVWSIDGWEKKKSRFIQAPSGRQS PLSGETKVQFHNDQTHLLVVHESQIAIYDSKLECLCSWSPKDSLSAPISSAIYSCDGS LIYAGFCDGAVGVFDSDNLRLRCRIAPSAYIPSFSVSSNSAYAVVIAAHPSEPNQIAL GMSDGAVHVVEPSDVELKWGTAPSQDNGPLPSSSSNPSLSGQPTELPSR" mRNA complement(join(<32204164..32204340,32204438..32204605, 32205767..32205952,32209232..32209327,32209894..32210022, 32210123..32210305,32210394..32210504,32212740..32212886, 32212965..32213066,32213869..32214036,32214114..32214348, 32214662..32214789,32214945..32215040,32215121..32215216, 32215298..32215371,32215482..32215554,32215805..32215914, 32216026..32216164,32216361..32216470,32216560..32216689, 32216770..32216950,32217249..32217407,32217492..32217605, 32217883..32218062,32218537..32219450)) /locus_tag="TCM_025381" /product="WD-40 repeat protein-like isoform 3" /inference="alignment:exonerate- protein:2:ricco:30073.m002232.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027305t4" /inference="similar to AA sequence:ricco:30073.m002232" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc829t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8168t1" CDS complement(join(<32204164..32204340,32204438..32204605, 32205767..32205952,32209232..32209327,32209894..32210022, 32210123..32210305,32210394..32210504,32212740..32212886, 32212965..32213066,32213869..32214036,32214114..32214348, 32214662..32214789,32214945..32215040,32215121..32215216, 32215298..32215371,32215482..32215554,32215805..32215914, 32216026..32216164,32216361..32216470,32216560..32216689, 32216770..32216950,32217249..32217407,32217492..32217605, 32217883..32218062,32218537..32218616)) /locus_tag="TCM_025381" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30073.m002232; paralog of Thecc1EG027305t4" /codon_start=1 /product="WD-40 repeat protein-like isoform 3" /protein_id="EOY10013.1" /db_xref="TAIR:AT1G15750.4" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7EYE2" /translation="MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQ VQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLK VFASFNEELFKEITQLLTLDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDK LTFPAFKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCSPSTNGARPPPPTN SPLVGPIPKAGAFPPIGAHGPFQPVVSPSSGAIAGWMSSGNPSLPHAAAVAAGPPGLV QPSSAAAFLKHPRTPSGMPGMDYQSADSEQLMKRIRTGQSDEVSFAGIAHTPNVDSQD DLPKTVVRALNQGTNVMSMDFHPQHQTILLVGTNVGDISLWEVGSRERLADKPFKVWD ISTASMPLQTALVNDAGISVNRCVWSPSDGHMLGVAFSKHIVQIYLYNPTGELRQHLE IDAHVGGVNDIAFAQPNKQLCIVTCGDDKMIKVWDTVAGRRHYMFESHEAPVYSVCPH YKENIQFIFSTAIDGKIKAWLYDCLGSRVDYDAPGQWCTTMAYSTDGTRLFSCGTSKE GESHLVEWNESEGAIKRRYAGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNTTM LTAVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGSRLIRMLESRAVDKIR GPSEPVNSKPLIVNALGPMGNAAIAPALERPDRGPPVVSITSLSTMDSSRLVDVKPRI SDDADKIKGWRIPDIMDPSHLKALRLPDAITAGKVVRLLYTNSGLALLALASNAVHKL WKWQRSDRNPSGKATANVAPQLWQPPSGTLMTNDINDTKPAEESATCIALSKNDSYVM SASGGKVSLFNMMTFKVMTTFMSPPPAATYLAFHPQDNNIIAIGMEDSTIQIYNVRVD EVKTKLKGHQNRITGLAFSQTLNSLVSSGADAQLCVWSIDGWEKKKSRFIQAPSGRQS PLSGETKVQFHNDQTHLLVVHESQIAIYDSKLECLCSWSPKDSLSAPISSAIYSCDGS LIYAGFCDGAVGVFDSDNLRLRCRIAPSAYIPSFSTLCSSNSAYAVVIAAHPSEPNQI ALGMSDGAVHVVEPSDVELKWGTAPSQDNGPLPSSS" mRNA complement(join(32205473..32205952,32209232..32209327, 32209894..32210022,32210123..32210305,32210394..32210504, 32212740..32212886,32212965..32213066,32213869..32214036, 32214114..32214348,32214662..32214789,32214945..32215040, 32215121..32215216,32215298..32215371,32215482..32215554, 32215805..32215914,32216026..32216164,32216361..32216470, 32216560..32216689,32216770..32216950,32217249..32217407, 32217492..32217605,32217883..32218062,32218537..32219109)) /locus_tag="TCM_025381" /product="WD-40 repeat protein-like isoform 4" /inference="alignment:exonerate- protein:2:ricco:30073.m002232.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027305t4" /inference="similar to AA sequence:ricco:30073.m002232" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc829t9; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8168t1" CDS complement(join(32205728..32205952,32209232..32209327, 32209894..32210022,32210123..32210305,32210394..32210504, 32212740..32212886,32212965..32213066,32213869..32214036, 32214114..32214348,32214662..32214789,32214945..32215040, 32215121..32215216,32215298..32215371,32215482..32215554, 32215805..32215914,32216026..32216164,32216361..32216470, 32216560..32216689,32216770..32216950,32217249..32217407, 32217492..32217605,32217883..32218062,32218537..32218616)) /locus_tag="TCM_025381" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30073.m002232; paralog of Thecc1EG027305t4" /codon_start=1 /product="WD-40 repeat protein-like isoform 4" /protein_id="EOY10014.1" /db_xref="TAIR:AT1G15750.4" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7EYE2" /translation="MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQ VQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLK VFASFNEELFKEITQLLTLDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDK LTFPAFKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCSPSTNGARPPPPTN SPLVGPIPKAGAFPPIGAHGPFQPVVSPSSGAIAGWMSSGNPSLPHAAAVAAGPPGLV QPSSAAAFLKHPRTPSGMPGMDYQSADSEQLMKRIRTGQSDEVSFAGIAHTPNVDSQD DLPKTVVRALNQGTNVMSMDFHPQHQTILLVGTNVGDISLWEVGSRERLADKPFKVWD ISTASMPLQTALVNDAGISVNRCVWSPSDGHMLGVAFSKHIVQIYLYNPTGELRQHLE IDAHVGGVNDIAFAQPNKQLCIVTCGDDKMIKVWDTVAGRRHYMFESHEAPVYSVCPH YKENIQFIFSTAIDGKIKAWLYDCLGSRVDYDAPGQWCTTMAYSTDGTRLFSCGTSKE GESHLVEWNESEGAIKRRYAGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNTTM LTAVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGSRLIRMLESRAVDKIR GPSEPVNSKPLIVNALGPMGNAAIAPALERPDRGPPVVSITSLSTMDSSRLVDVKPRI SDDADKIKGWRIPDIMDPSHLKALRLPDAITAGKVVRLLYTNSGLALLALASNAVHKL WKWQRSDRNPSGKATANVAPQLWQPPSGTLMTNDINDTKPAEESATCIALSKNDSYVM SASGGKVSLFNMMTFKVMTTFMSPPPAATYLAFHPQDNNIIAIGMEDSTIQIYNVRVD EVKTKLKGHQNRITGLAFSQTLNSLVSSGADAQLCVWSIDGWEKKKSRFIQAPSGRQS PLSGETKVQFHNDQTHLLVVHESQIAIYDSKLECLCSVSCLPCIIFLVL" mRNA complement(join(32206387..32207053,32209232..32209327, 32209894..32210022,32210123..32210305,32210394..32210504, 32212740..32212886,32212965..32213066,32213869..32214036, 32214114..32214348,32214662..32214789,32214945..32215040, 32215121..32215216,32215298..32215371,32215482..32215554, 32215805..32215914,32216026..32216164,32216361..32216470, 32216560..32216689,32216770..32216950,32217249..32217407, 32217492..32217605,32217883..32218062,32218537..32219450)) /locus_tag="TCM_025381" /product="WD-40 repeat protein-like isoform 5" /inference="alignment:exonerate- protein:2:ricco:30073.m002232.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027305t4" /inference="similar to AA sequence:ricco:30073.m002232" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc746t17; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8168t1" CDS complement(join(32206883..32207053,32209232..32209327, 32209894..32210022,32210123..32210305,32210394..32210504, 32212740..32212886,32212965..32213066,32213869..32214036, 32214114..32214348,32214662..32214789,32214945..32215040, 32215121..32215216,32215298..32215371,32215482..32215554, 32215805..32215914,32216026..32216164,32216361..32216470, 32216560..32216689,32216770..32216950,32217249..32217407, 32217492..32217605,32217883..32218062,32218537..32218616)) /locus_tag="TCM_025381" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:30073.m002232; paralog of Thecc1EG027305t4" /codon_start=1 /product="WD-40 repeat protein-like isoform 5" /protein_id="EOY10015.1" /db_xref="TAIR:AT1G15750.4" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7EYE2" /translation="MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQ VQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLK VFASFNEELFKEITQLLTLDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDK LTFPAFKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCSPSTNGARPPPPTN SPLVGPIPKAGAFPPIGAHGPFQPVVSPSSGAIAGWMSSGNPSLPHAAAVAAGPPGLV QPSSAAAFLKHPRTPSGMPGMDYQSADSEQLMKRIRTGQSDEVSFAGIAHTPNVDSQD DLPKTVVRALNQGTNVMSMDFHPQHQTILLVGTNVGDISLWEVGSRERLADKPFKVWD ISTASMPLQTALVNDAGISVNRCVWSPSDGHMLGVAFSKHIVQIYLYNPTGELRQHLE IDAHVGGVNDIAFAQPNKQLCIVTCGDDKMIKVWDTVAGRRHYMFESHEAPVYSVCPH YKENIQFIFSTAIDGKIKAWLYDCLGSRVDYDAPGQWCTTMAYSTDGTRLFSCGTSKE GESHLVEWNESEGAIKRRYAGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNTTM LTAVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGSRLIRMLESRAVDKIR GPSEPVNSKPLIVNALGPMGNAAIAPALERPDRGPPVVSITSLSTMDSSRLVDVKPRI SDDADKIKGWRIPDIMDPSHLKALRLPDAITAGKVVRLLYTNSGLALLALASNAVHKL WKWQRSDRNPSGKATANVAPQLWQPPSGTLMTNDINDTKPAEESATCIALSKNDSYVM SASGGKVSLFNMMTFKVMTTFMSPPPAATYLAFHPQDNNIIAIGMEDSTIQIYNVRVD EVKTKLKGHQNRITGLAFSQTLNSLVSSGADAQGWNLEGYISASKLSHIIYASKWKVE LSIGGFIFLFIPNIKVDFVVYKPVLHCAFSL" mobile_element complement(32216984..32217045) /note="source:CACAO_M_S_E6117_F51_scaffold_2 1132 1190" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32231011..32231319) /note="source:scaffold_9_CACTA_0946 4675 4986" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32238864..32238947 /note="source:scaffold_10_CACTA_0137 6927 7010" /mobile_element_type="transposon:TIR/CACTA" gene 32241239..32245780 /locus_tag="TCM_025384" /note="dbxref CacaoGD:Thecc1EG025384" mRNA join(32241239..32241394,32243463..32243686, 32243833..32244295,32244560..32244644,32245083..32245163, 32245251..32245316,32245413..32245490,32245636..32245780) /locus_tag="TCM_025384" /product="Cleavage and polyadenylation specificity factor subunit 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025390t1" /inference="similar to AA sequence:frave:gene13412" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS join(32243518..32243686,32243833..32244295, 32244560..32244644,32245083..32245163,32245251..32245316, 32245413..32245490,32245636..32245638) /locus_tag="TCM_025384" /note="dbxref frave:gene13412; paralog of Thecc1EG025390t1" /codon_start=1 /product="Cleavage and polyadenylation specificity factor subunit 1" /protein_id="EOY10016.1" /db_xref="TAIR:AT5G51660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FGR0" /translation="MTQELSIPLPNSESRPGSESSTVISVSIADPFVLLRIMMEAFYY LLEVCFIIDDFKYLATCTVSINTPTAFESSKKMVPACTLYHDKGPEPWLCKASTDAWL STGIGESIDGADGGPYDQGDIYCDICYESGALEILDVPNFNCVFSVEKFAPGRTHLVD AYTLESSKDSEKVINKDSEKVINKSSEELTGQGRKENVQNLKVVELAMQRCSGSQGFF LSESRPGWFIVFRERLRVHPQLCDGSIVASTVLHNASCNHGFINVTLQGILKICRMPP ASNDDNYWPVQKIPLRGTPHQVTYFAERNLYPIIVSVP" mobile_element complement(32246492..32246737) /note="source:INTACT383F_F354_scaffold_3-int 871 1089" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 32246614..32246867 /note="source:scaffold_1_CACTA_0008 7165 7352" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32247000..32247087 /note="source:CACAO_M_E5899_F5_scaffold_2 20731 20814" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32247243..32247552 /note="source:scaffold_1_CACTA_0008 7142 7370" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32248075..32248999 /note="source:INTACT639F_F363_scaffold_5-int 7466 8409" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 32248941..32249049 /note="source:CACAO_M_E33977_F20_scaffold_4 5899 6029" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32249044..32250479) /note="source:INTACT473_F7_scaffold_3-int 7732 8814" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 32249514..32255214 /locus_tag="TCM_025385" /note="dbxref CacaoGD:Thecc1EG025385" mRNA join(32249514..32249609,32253064..32255214) /locus_tag="TCM_025385" /product="Cytochrome P450, family 87, subfamily A, polypeptide 6, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400048239.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025626t1" /inference="similar to AA sequence:ricco:30148.m001481" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" mobile_element complement(32251024..32251355) /note="source:INTACT473_F7_scaffold_3-int 6360 6707" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32251744..32252030 /note="source:INTACT639F_F363_scaffold_5-int 8287 8573" /mobile_element_type="retrotransposon:LTR/Copia" CDS 32253066..32254601 /locus_tag="TCM_025385" /note="dbxref ricco:30148.m001481; paralog of Thecc1EG025626t1" /codon_start=1 /product="Cytochrome P450, family 87, subfamily A, polypeptide 6, putative" /protein_id="EOY10017.1" /db_xref="TAIR:AT1G64940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HE97" /translation="MGTCFIIIGLMIAFFISVLLKYLLSLLTKKTTHQLPPGPFAIPF IGNLFWLHKPFPQIMALAPTLHSKYGPIYTLRVGSKPIIIIGSHSLAHQALIVQGAVF SDRPSAPASEKLFSCDQHNITSAFHGPTWLLFRRNLVSNILHSSKIKSYACARKWAIQ ILIDDLKSQSDFVDNGIQVMEPIQHAIFCLLVYMCFGQKLERKQIKDIRDVQRRVLLS FNRSKMINLFPRFGKIFFHQSWKELLTLRKDQEETLVPLIRARRALKDKNICQESFLP YVDTLFDLNLPEQKRKLEEKEIVTLCSEFFTGGTDTTATSLQWIMANLVKYQHIQDKL FEEIKGVIGDGEVEIKEDDLRKMPYLRAVILEGLRRHPPSLFLVPHSVTKDVLLHGFL VPKDSVVTLTVGEMGRDPKVWENPMEFKPERFLNGDDGEAFDFTGRKEIKMMPFGVGR RMCPAYNLAMLHLEYFVANLVWHFKWSNLKGHDVDLTEKHEFTSVMQNSLQVHITPRL HVN" gene complement(32255686..32261491) /locus_tag="TCM_025386" /note="dbxref CacaoGD:Thecc1EG025386" mRNA complement(join(32255686..32256136,32257288..32257373, 32257488..32257566,32257963..32258011,32258097..32258149, 32260935..32260959,32261023..32261491)) /locus_tag="TCM_025386" /product="Uncharacterized protein" /note="quality class is medium, express is strong, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc2076t2" CDS complement(join(32257342..32257373,32257488..32257566, 32257963..32258011,32258097..32258149,32260935..32260959, 32261023..32261048)) /locus_tag="TCM_025386" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10018.1" /translation="MAQWCLWKYVNSKSYSMVMSGLCPSIPFLFVGIISENLSYVLRY TSVATVMLHQKQMKRWLYGTLSCLLKTKFTPAYCIEVDDFIEI" mobile_element 32258259..32258469 /note="source:INTACT850F_F2_scaffold_5-int 2594 2826" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32258492..32259003) /note="source:INTACT170F_F2_scaffold_3-int 1299 1611" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32260926..32261072) /note="source:INTACT170F_F2_scaffold_3-int 1299 1456" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32261159..32261670) /note="source:INTACT170F_F2_scaffold_3-int 1299 1611" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32264021..32264332) /note="source:INTACT170F_F2_scaffold_3-int 1299 1611" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32266686..32266996) /note="source:INTACT170F_F2_scaffold_3-int 1301 1611" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32267883..32268185) /note="source:INTACT170F_F2_scaffold_3-int 1288 1611" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(32269816..32275108) /locus_tag="TCM_025390" /note="dbxref CacaoGD:Thecc1EG025390" mRNA complement(join(32269816..32270828,32271354..32271431, 32271528..32271593,32271680..32271760,32272233..32272341, 32272508..32272946,32273121..32273317,32273810..32273904, 32274174..32274224,32274355..32274450,32274869..32275108)) /locus_tag="TCM_025390" /product="Cleavage and polyadenylation specificity factor subunit 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025384t1" /inference="similar to AA sequence:frave:gene13412" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.69 coverage" CDS complement(join(32270811..32270828,32271354..32271431, 32271528..32271593,32271680..32271760,32272233..32272341, 32272508..32272946,32273121..32273262)) /locus_tag="TCM_025390" /note="dbxref frave:gene13412; paralog of Thecc1EG025384t1" /codon_start=1 /product="Cleavage and polyadenylation specificity factor subunit 1" /protein_id="EOY10019.1" /db_xref="TAIR:AT5G51660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FGR0" /translation="MTQELSIPLPNSESRPGSESSTVISVFIADPYVLLRMTDGSILL LVGDLATCTVSINTPTTFEGSKKMVSACTLYHDKGPEPWLCKASTNAWLSTSIRESID GADGRPHDQGDIYCVICYESDALEILDVPNFNCVFSVEKFASGRTHLVDAYTLESSRD SEKVINKSSEELTGQGRKKNVQNLKVVELAMQRWEEMSNGTLSQRITSFKNISGSQGF FLSGSRPGWFIVLCDGSIVASTVLHNVSCNHGFINVTSQGILKIFQMPSASNYDNYWP VQKIPLRGTPHQLTYFAERNLYPIIVSVPVASFV" gene 32275206..32284224 /locus_tag="TCM_025391" /note="dbxref CacaoGD:Thecc1EG025391" mRNA join(32275206..32275302,32279174..32279252, 32279350..32279446,32279555..32279953,32281486..32281650, 32281766..32282029,32282117..32282329,32283269..32283502, 32283627..32284224) /locus_tag="TCM_025391" /product="Beta-amylase 6" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01030642001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007781t1" /inference="similar to AA sequence:Phytozome:POPTR_0017s06840.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7981t1" CDS join(32279372..32279446,32279555..32279953, 32281486..32281650,32281766..32282029,32282117..32282329, 32283269..32283502,32283627..32283779) /locus_tag="TCM_025391" /note="paralog of Thecc1EG007781t1" /codon_start=1 /product="Beta-amylase 6" /protein_id="EOY10020.1" /db_xref="Phytozome:POPTR_0017s06840.1" /db_xref="TAIR:AT2G32290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L762" /translation="MEAQSAVTDKKKMLANYVPIYVMLPLGIVSNDNVLLDKDGLKKQ LLKLKEAGIDGVMSDVWWGIVESPGPKQYDWSAYRSLVELVKECGLKLQAIMSFHQCG GNVGDEVYIPIPQWVLDIGETDPDIFYTNRAGNRNKEYLTLGVDHQAIFNGRTAIQIY SDYMKSFREVMSDLIEAGVIIDIEVGLGAAGELRYPSYPQSQGWVFPGIGEFQCYDKY LKAAFKEAATKAGHPEWELPDNAGEYNDTPESTEFFGINGTYLTVKGKFFLTWYSNML LCHGDDTLDEANKAFLGCELKLAAKVSGIHWWYKSDSHAAELTAGYYNLNDRDGYRPI ARMLSRHDRAILNFTCLEMRDSEQDAAAKSGPQELVQQVLSGGWREHIEVAGENALSR YDSDAYNQMLLNARPNGVTEEGRPQMHTVTYLRSSDDLFEEENFELFKIFVKKMHADQ EYCSDPKMYGQELGPLQRSKPKIPIDDLLDATERLEPFPWDEETDMKVDG" gene 32284283..32286667 /locus_tag="TCM_025392" /note="dbxref CacaoGD:Thecc1EG025392" mRNA join(32284283..32285021,32285266..32285478, 32285587..32285738,32285826..32286099,32286187..32286667) /locus_tag="TCM_025392" /product="SGNH hydrolase-type esterase superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s02420.1.5" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031890t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s02420.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7983t1" CDS join(32284745..32285021,32285266..32285478, 32285587..32285738,32285826..32286099,32286187..32286431) /locus_tag="TCM_025392" /note="paralog of Thecc1EG031890t1" /codon_start=1 /product="SGNH hydrolase-type esterase superfamily protein, putative" /protein_id="EOY10021.1" /db_xref="Phytozome:POPTR_0005s02420.1" /db_xref="TAIR:AT5G03980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N4J7" /translation="MVSGDLSLKKWLPPRYLFALVLVLDVIPCNYAYILSTCKFDAIH QVGDSISDTGNYIQENPSSVYARLPYGETFFKKATGRCSNGLLMIDYLALSAEIPFLD AYLNKDGLFDHGVNFAVAGATALSVEVLSKRNISSVPTNKSLSNQLDWMFSYFNRTCR YDKDCFIKNGRALFMVGEIGGNDYNYAFQIGNLTLEEVEAMVPEVVQAIKYAVKRVIG YGATRLVVPGNFPIGCFPVYLTKFQTNDTTAYDDLHCLKYLNNISIYHNDLLQQAIEE LKEEHPNVIIVYGNYYTAFQWLLSKANLLGFDPTSVQKACCGIGGKYNFDPSRWCAKY PEVTVCLNPDERLSWDGVHLTQRAYELMAAWLIRDIYPKLQCEHTVLYSSAV" gene complement(32286684..32315028) /locus_tag="TCM_025393" /note="dbxref CacaoGD:Thecc1EG025393" mRNA complement(join(32286684..32287591,32288468..32288653, 32289165..32289257,32289775..32289904,32289987..32290231, 32290320..32290382,32291357..32291423,32291758..32291891, 32292382..32292448,32292598..32292788,32293809..32293982, 32295063..32295195,32295658..32295752,32296431..32296487, 32297452..32297592,32298446..32298577,32298653..32298711, 32299470..32300124,32307414..32307475,32314858..32315028)) /locus_tag="TCM_025393" /product="Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024422001" /inference="similar to AA sequence:Phytozome:GSVIVT01024422001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8055t3" mRNA complement(join(32287060..32287591,32288468..32288653, 32289165..32289257,32289775..32289904,32289987..32290231, 32290320..32290382,32291357..32291423,32291758..32291891, 32292382..32292448,32292598..32292788,32293809..32293982, 32295063..32295195,32295658..32295752,32297157..32297182)) /locus_tag="TCM_025393" /product="Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024422001" /inference="similar to AA sequence:Phytozome:GSVIVT01024422001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1066t9; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8055t3" mRNA complement(join(32287088..32287591,32288468..32288653, 32289165..32289257,32289775..32289904,32289987..32290231, 32290320..32290385,32291357..32291423,32291758..32291891, 32292382..32292448,32292598..32292788,32293809..32293982, 32295063..32295195,32295658..32295752,32296430..32296487, 32297452..32297592,32298446..32298577,32298653..32298711, 32299470..32299860)) /locus_tag="TCM_025393" /product="Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024422001" /inference="similar to AA sequence:Phytozome:GSVIVT01024422001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8055t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8055t3" CDS complement(join(32287298..32287591,32288468..32288653, 32289165..32289257,32289775..32289904,32289987..32290231, 32290320..32290382,32291357..32291423,32291758..32291891, 32292382..32292448,32292598..32292788,32293809..32293982, 32295063..32295195,32295658..32295752,32296431..32296487, 32297452..32297592,32298446..32298577,32298653..32298711, 32299470..32299788)) /locus_tag="TCM_025393" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase isoform 1" /protein_id="EOY10022.1" /db_xref="Phytozome:GSVIVT01024422001" /db_xref="TAIR:AT1G54130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S1Z6" /translation="MPFLSSSPCQSQTLSNKMFLAQKTSPLFLHKFYPKTATKFRCIP KKFTVSASLNAIAAAASGSGATVHGAVTSAITQVAVTAFAIASGACLSTKVDFLWPKV EEQPGSFTVEGIDVTGYPIFNEAKVQKAIAFAKRAHNGQFRKTGDPYLSHCIHTGRIL AMLVPSSGLRAVDTVVAGILHDVVDDTRESLLSIEAEFGDDVARLVAGVSRLSYINQL LRRHRRINVNQGTLGHEEANNLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPLAKA QAVAQETLHIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKLRADLASMWSTSNKGA YPRRISAKASWSSLEENDSAHDDEAFMNDEDITSIKDLLEAVVPFDILLDRRKQTNFL NNLGKSSEDEPKPKVVQDAGIALASLVVCEEALERELFISISYVPGMEVTLSSRLKSL YSIYSKMKRKDVGINKIYDARALRVVVGDKNGTLHGPAVQCCYSLLNIVHRLWTPIDG EFDDYIVNPKASGYQSLHTAVQVPDASPLEVQIRTQRMHEYAEHGLAAHWLYKETGNE LPSVSSLDESEIEESSYLPKDLDDQNSMDDDLFLKYRSLKVGHPVLRVEGSNLLAAVI IKVDKEGTELLVAVSFGLAASEAVADRRSSFQIKRWEAYARLFKKVSDEWWCEPGHGD WCTCLEKYTLCRDGIYHKQDQFERLLPTFIQVIDLTEQEESEYWAVMSAVFEGKPVES VASRPDLKYVASNSFEASINRKVRLLRTMLQWEEQLRLESSFGRQEGGAKSSVNPDSV VLGEVVIICWPHGDIMRLRTGSTAADAARRAGLEGKLVLVNDQLVLPSTELKDGDVVE VRL" CDS complement(join(32287298..32287591,32288468..32288653, 32289165..32289257,32289775..32289904,32289987..32290231, 32290320..32290382,32291357..32291423,32291758..32291891, 32292382..32292448,32292598..32292788,32293809..32293982, 32295063..32295195,32295658..32295752,32297157..32297159)) /locus_tag="TCM_025393" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase isoform 3" /protein_id="EOY10024.1" /db_xref="Phytozome:GSVIVT01024422001" /translation="MANNLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPLAKAQAV AQETLHIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKLRADLASMWSTSNKGAYPR RISAKASWSSLEENDSAHDDEAFMNDEDITSIKDLLEAVVPFDILLDRRKQTNFLNNL GKSSEDEPKPKVVQDAGIALASLVVCEEALERELFISISYVPGMEVTLSSRLKSLYSI YSKMKRKDVGINKIYDARALRVVVGDKNGTLHGPAVQCCYSLLNIVHRLWTPIDGEFD DYIVNPKASGYQSLHTAVQVPDASPLEVQIRTQRMHEYAEHGLAAHWLYKETGNELPS VSSLDESEIEESSYLPKDLDDQNSMDDDLFLKYRSLKVGHPVLRVEGSNLLAAVIIKV DKEGTELLVAVSFGLAASEAVADRRSSFQIKRWEAYARLFKKVSDEWWCEPGHGDWCT CLEKYTLCRDGIYHKQDQFERLLPTFIQVIDLTEQEESEYWAVMSAVFEGKPVESVAS RPDLKYVASNSFEASINRKVRLLRTMLQWEEQLRLESSFGRQEGGAKSSVNPDSVVLG EVVIICWPHGDIMRLRTGSTAADAARRAGLEGKLVLVNDQLVLPSTELKDGDVVEVRL " CDS complement(join(32287298..32287591,32288468..32288653, 32289165..32289257,32289775..32289904,32289987..32290231, 32290320..32290385,32291357..32291423,32291758..32291891, 32292382..32292448,32292598..32292788,32293809..32293982, 32295063..32295195,32295658..32295752,32296430..32296438)) /locus_tag="TCM_025393" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase isoform 2" /protein_id="EOY10023.1" /db_xref="Phytozome:GSVIVT01024422001" /translation="MKRANNLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPLAKAQ AVAQETLHIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKLRADLASMWSTSNKGAY PRRISAKASWSSLEENDSAHDDEAFMNDEDITSIKDLLEAVVPFDILLDRRKQTNFLN NLGKSSEDEPKPKVVQDAGIALASLVVCEEALERELFISISYVPGMEVTLSSRLKSLY SIYSKMKRKDVGINKIYDARALRVVVGDKNGTLHGPAVQCCYSLLNIVHRLWTPIDGE FDDYIVNPKASGYQQSLHTAVQVPDASPLEVQIRTQRMHEYAEHGLAAHWLYKETGNE LPSVSSLDESEIEESSYLPKDLDDQNSMDDDLFLKYRSLKVGHPVLRVEGSNLLAAVI IKVDKEGTELLVAVSFGLAASEAVADRRSSFQIKRWEAYARLFKKVSDEWWCEPGHGD WCTCLEKYTLCRDGIYHKQDQFERLLPTFIQVIDLTEQEESEYWAVMSAVFEGKPVES VASRPDLKYVASNSFEASINRKVRLLRTMLQWEEQLRLESSFGRQEGGAKSSVNPDSV VLGEVVIICWPHGDIMRLRTGSTAADAARRAGLEGKLVLVNDQLVLPSTELKDGDVVE VRL" mobile_element 32298219..32298319 /note="source:scaffold_5_CACTA_0596 1744 1847" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32299968..32300014 /note="source:CACAO_Helitron_E169_scaffold_5 1 47" /mobile_element_type="transposon:Helitron" mobile_element complement(32304084..32304252) /note="source:CACAO_MITE208_scaffold_211 208 371" /mobile_element_type="transposon:TIR/MITE" gene complement(32306529..32314468) /locus_tag="TCM_025394" /note="dbxref CacaoGD:Thecc1EG025394" mRNA complement(join(32306529..32307475,32307560..32307690, 32309095..32309536,32309620..32310415,32313395..32314468)) /locus_tag="TCM_025394" /product="TMV resistance protein N" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400031803" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025414t1" /inference="similar to AA sequence:frave:gene08320" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc3417t3" CDS complement(join(32306933..32307475,32307560..32307690, 32309095..32309536,32309620..32310415,32313395..32313894)) /locus_tag="TCM_025394" /note="dbxref frave:gene08320; paralog of Thecc1EG025414t1" /codon_start=1 /product="TMV resistance protein N" /protein_id="EOY10025.1" /translation="MAVSMVHHQESSSLISRYTYHVFLSFRGTDTRKNFTDHLYMALV QAGIHTFRDDDEIERGENIRDKIERAMQESKIFIIVFSKNYASSTWCLNELVKILEHR KFSKHIVLPIFYDVNPSQVKKQTESFAEAFARHEESFKSEMDVVQRWRAALREVADLG GMLLEDSLERLMLKDCTKLIEVDQSIGEIMTLTVLNLKGCKSLRKLPKTIGSLESLEE LILSGCSTLDDVPRNLQNMKSLRVLNLDGTAICESNSWLSWLSLKRSKELGFFWASLP CSLVKLSLESCRLSDDVMPADLSYLPSLKSLNLSRNPIRSLPKSISRLGKLDELLLTC CKDLQWLPKLPISLNGLRMKMYQSMYSYASLSLLLSLKRFILFGCEKLTKIEGVFKFE PFENFEIEEIKCLFNMDSINSIQLQVYNYLTDTKMITTPQVFHEGGITSCFVSESEVP ISFKHRCKGPKISFSLPQNPSEKVSWLNLCIEYSLVSDEIFEFLPSVYIVNETKELVW AYFSSFIGIPKTKSDTVLWVIHWPVKEYQLENGDLVSCKLISSGLKIREFGVTYVAKR KDIHENDTRLYCQGNEDIWRKIKVKVNEELLNLGSSGNVKVQIYNYLEEPIIVASPQV LYDCGIISMFVPYDFACWGRYSHHVIGNKVSFTVARSSSQQICWLNFMVALVAEDDQI FDFLSRIEIVNETKSTTWTYYRRFIGIPKAKNTLYWLSSWRFMGEDGDRVSFTVFSDL YVKECVIDLIYEPDDNLLHKCNSTYQHSPGTSAIFRWLFPVFVYLLFMSQRTLYRIRC LDKCE" mobile_element complement(32314967..32316174) /note="source:scaffold_5_CACTA_0614 3708 4908" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32316843..32316988 /note="source:scaffold_5_CACTA_0615 2269 2417" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32319601..32324215 /note="source:scaffold_5_CACTA_0614 1 4615" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32325188..32326439 /note="source:scaffold_5_CACTA_0614 5158 6409" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32333014..32333241 /note="source:CACAO_Again_on_E27_scaffold_1 443 668" /mobile_element_type="transposon:TIR/hAT" gene complement(32336714..32345769) /locus_tag="TCM_025397" /note="dbxref CacaoGD:Thecc1EG025397" mRNA complement(join(32336714..32336780,32336858..32337305, 32339296..32339529,32340573..32340905,32340998..32341151, 32341994..32342137,32344895..32345435,32345623..32345769)) /locus_tag="TCM_025397" /product="TMV resistance N-like protein" /note="quality class is medium-expresste, express is weak, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.27 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g7993t2" CDS complement(join(32336755..32336780,32336858..32337305, 32339296..32339529,32340573..32340905,32340998..32341151, 32341994..32342137,32344895..32345435,32345623..32345641)) /locus_tag="TCM_025397" /codon_start=1 /product="TMV resistance N-like protein" /protein_id="EOY10026.1" /db_xref="TAIR:AT5G36930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RVC7" /translation="MSATKGCASSANPDSLVFFFNGCFNGPPPGVLLANSRCTYDVFL SFRRVDTCKNFADHLYMTLVHVGIHTFRDDDEIERGEKRRDEIERAIYESKISIIIFL KNYTSSTWSLNELVKIMEHRKFSKHIVLPIFYDVNPSQVKEQTGSFAEAFARHEESFK SDMDTVQRWRAALREVADLGGMLLEDRYESHFIQDIIKQIQNKLHRTTFYAPPYLVGI DFLVTCINWWFGDGQIRFLLVVNEKNKLMMHQMIRDMGRNITRQESPNLAKRSRLWQK DAFDALREKIGTKIIKCLTIDLQRLLKEKYGKTITNKKNPLPMSNEVDIEIDAFANMQ RLELVQLDYVKLKRDYKDFPKSLIWLSWYGFAQEYLPTNLDISKLVVLEMCNSSLKRV WNDSKVFHEGLITSCFVFESGVPISFEHRCKGSKIYFSLAQNPCEKVSWLNLCIEYSF ISNDIFEFPPSVYIVNETKELMWAYVLYDCGIISIYDKYSSPEDRCGGSHHVVGNKVS LVVVRSSGQHIGYLNLVAILFAGDDKIFDFLSHIEIVNKTKDTKWIHHKRFIGISKAK NNIYWFNLWRFLDEFEDGDQVSFTIFFNLCVKSCGINLKYEPDDDLLHKRNFSYQQLP VKSLDKLE" mobile_element 32347875..32350466 /note="source:INTACT872F_F74_scaffold_5-int 1 2592" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(32353214..32360098) /locus_tag="TCM_025399" /note="dbxref CacaoGD:Thecc1EG025399" mRNA complement(join(32353214..32353950,32354080..32354332, 32354687..32354790,32360074..32360098)) /locus_tag="TCM_025399" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.28 coverage" CDS complement(join(32353735..32353950,32354080..32354332, 32354687..32354736)) /locus_tag="TCM_025399" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10027.1" /translation="MSGTSQNGNILLKGLKRITLWAKVKWPYKYDKLNDVIMGSSMAK SGLVLKRDNQCPEWKSSSNGFLKFNIDEVVGKDIGRAGIGGVLRDKERVIRIRFSRVW VSDLEKPPWKLRKEIISLEKCKRLIGRWTAPKIPRKSNGKADELTKADGNKIDNFFMI SNQGVKYAKKEL" gene 32360196..32382763 /locus_tag="TCM_025400" /note="dbxref CacaoGD:Thecc1EG025400" mRNA join(32360196..32360236,32362673..32363495, 32363603..32363762,32377066..32377240,32378425..32378944, 32382737..32382763) /locus_tag="TCM_025400" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.29 coverage" gene 32360716..32370071 /locus_tag="TCM_025401" /note="dbxref CacaoGD:Thecc1EG025401" mRNA join(32360716..32361044,32365411..32365605, 32366082..32366143,32367812..32368187,32368622..32369036, 32369124..32369177,32369857..32370071) /locus_tag="TCM_025401" /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021646001" /inference="similar to AA sequence:Phytozome:Glyma13g21780.1" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" mobile_element 32362155..32365139 /note="source:CACAO_M_S_E86211_F313_scaffold_7 1 3010" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(32362787..32363495,32363603..32363661) /locus_tag="TCM_025400" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10028.1" /translation="MDRKFLAVVNFILVAARTRTSRKKSHFSLKTSHPAKITIATCNT CKLPNFNKTNAYIFAFTTIYPSSTCTPSHHHHHAHHPIIIISYATAYAHIAGSATTYV HSHSHITGSATTYVHSYSHIAGSTTAYVHSYSHIVGSATAYVHSHSHIAGSATAYVHS HSHIAGSATAYVHSHSHIAGSATAYVHSYSHIAGSKSTCKEASNAYHAFYHIVITHKP LYSTFSQYKIILLKVCSQVRGYNPLPVSNGSPPSHNP" CDS join(32365432..32365605,32366082..32366143, 32367812..32368187,32368622..32369036,32369124..32369177, 32369857..32369906) /locus_tag="TCM_025401" /codon_start=1 /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /protein_id="EOY10029.1" /db_xref="Phytozome:Glyma13g21780.1" /db_xref="TAIR:AT4G23160.1" /translation="MMFIKAKIFASIRGSIRKRDNVKELLKAIHEQFESSNKALASTL MTKLSSMKLTSVKRFYNPYFEYLVSLSKPKKANGYAKAIGCKYVFKTKKDSLGNIERY KAILVAKGFTQKEGINYMKTFSPISKIDSLHVIMALVAHFNLELHQMDVKIAFLNGNL EEKVYMKQPERFSSSDGEHLVCKLNKSIYGLTQASHQWYLKFYDVCTRLEIAFVVGML GRYQSNPSMDHWKGVKKVMRDLKGTKDYMLMYRRIDNLEVVGYLDSDFTRCVDSQKST PGYVFMFDYRTCLKGVQNRPSLLLLLSRPGTSHRARDNSRDASTNILHPNVDRNLTKL SYQLSHFPGAFSSFLSKTSKLAKKVVAVPWRWLSSPSRGGLA" mobile_element complement(32368914..32372357) /note="source:CACAO_M_E12773_F323_scaffold_3 1 3410" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32375664..32376871) /note="source:INTACT686_F300_scaffold_3-int 6836 8046" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(32378234..32379488) /note="source:INTACT686_F300_scaffold_3-int 5579 6833" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 32379506..32380144 /note="source:CACAO_M_E84368_F4_scaffold_10 5494 6138" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(32382765..32392521) /locus_tag="TCM_025403" /note="dbxref CacaoGD:Thecc1EG025403" mRNA complement(join(32382765..32384099,32384186..32384316, 32386467..32386902,32386986..32387858,32388172..32388282, 32388371..32389511,32391176..32391708,32392381..32392521)) /locus_tag="TCM_025403" /product="TMV resistance protein N, putative" /inference="alignment:exonerate- protein:2:ricco:30128.m008658" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027222t1" /inference="similar to AA sequence:Phytozome:POPTR_0007s04750.1" /note="quality class is strong-expresste, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.22 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc3897t1" CDS complement(join(32383566..32384099,32384186..32384316, 32386467..32386902,32386986..32387858,32388172..32388282, 32388371..32389511,32391176..32391666)) /locus_tag="TCM_025403" /note="paralog of Thecc1EG027222t1" /codon_start=1 /product="TMV resistance protein N, putative" /protein_id="EOY10030.1" /db_xref="Phytozome:POPTR_0007s04750.1" /db_xref="TAIR:AT5G36930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S039" /translation="MAVSIVQESSSISRCGYDVFLSFRGVDTRKNFTDHLYMTLVNVG IHTFRDDDEIERGEKIRDEIERAIYESKISIIIFSKNYASSTWCLNELVKIMEHRKFS KHIVLPIFYDVNPSQVKEQTGSFAEAFARHEESFKSEMDVVQRWRAALREVAVLGGMF LEDRYEWQFIQDIIKQVQNKLHHPTLYVPPCVVGIDSLVTCINSWLGDGSNKVGIATI CGIGGIGKTTIAKVVYNLNIQRFERYSFLADVREVTQERNGLVRLQRQLISDILKGKV NKIHNSDDGITKIKEAICRRRVLLVLDDVDDSEKITELIGAQIPFHPGSKIIITSRHQ CLLSDPFIIQMFDLEASSSYGDLCKVFEVKELAFNESFQLFNWYAFGQNDPIDNYMKY ARSVVKHCGGLPLALQILGSSLSGKSINVWKSALEKLKAIPDSKIQKILRISYDSLQD DHDKNLFLDIACVFIGKDKDYTTTILDGCDYYTAIGIENLINRSLLVVNEKNKLMMHQ MIRDMGRNIICQESPDLGKRSRLWHKDAFDALRAKIGTKTIKCLTIDLQRLLKDKYAK TATNYSKNPFLVSNEHFLPNLKILNLSHSHALLKILNLSGLYRLERLMLKDCIKLIEV DQSIGDIKTLTVLNLKGCKSLKKLPRTIGSLKSLGELILSGCSTLGDVPRDLQNLKSL RVLNLDGTAICESNSWLSWLSLKRSKELSFFWASLPCSLVKLSLESCRLSDDVMPTDL SYLPSLKSLNLSRNPIHSLPESIIRLTKLDELLLTCCKELQWLPKLPTSGLRVIMSQS LHKISSLPCLLNFKRCIVFGCDKLSEVEGVFKLEPIENFEGEHIKSLFNVDSIGSNKL QIYNYLTDTKMVATPQVFHDSGITSCFAFGSEVPILFEYRSEGSKISFSLSKNSSEKV SWLNLCIVYSLVSDEIFEFLPSVHLVNETKQLVWSYFSSFIGISETNSNTILWLIHWP VKDYQLDNGDLVSLSTSGFNVREFGVTCVSETKVMYEDDTPQYSQETEYIWRGIELKV NEELLKLGSSGNIKVQIYNELEESKMIASPKVLYDCGIISIFDTYDCGYNHAVGNKVS FVVARSSGQHISYLNLVVVLLAEDDKIFDFLSHIEIVNETKDSKWIHHKRFIGIPKAR NNIYWFSLWRFMGELEDGDQVSCTVFSDLCVKGCTFDLKHEPYDNLLHKHPSDYQHLR DKTISSYWLFPFFLYHLFRSQRTLYRIQSLNKLE" gene complement(32393176..32396068) /locus_tag="TCM_025404" /note="dbxref CacaoGD:Thecc1EG025404" mRNA complement(join(32393176..32394111,32395040..32395118, 32396059..32396068)) /locus_tag="TCM_025404" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS complement(join(32393981..32394111,32395040..32395115)) /locus_tag="TCM_025404" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10031.1" /translation="MSAHRGTAAVVTSSRGVPGCDIRRGEMDRQKLQDFNSLASCKRS QEIGRIQAKKMRESKLSLGLRLDY" mobile_element complement(32395052..32398047) /note="source:CACAO_M_E12459_F328_scaffold_3 188 3141" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32398042..32400991) /note="source:CACAO_M_S_E34046_F60_scaffold_4 3508 6465" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32399894..32408068 /note="source:CACAO_M_S_E122077_F328_scaffold_10 1907 10198" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32409231..32409429 /note="source:CACAO_M_E3780_F76_scaffold_1 53 244" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32413902..32416520 /note="source:CACAO_M_S_E66549_F53_scaffold_5 1 2619" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(32421638..32434952) /locus_tag="TCM_025407" /note="dbxref CacaoGD:Thecc1EG025407" mRNA complement(join(32421638..32421930,32428725..32429047, 32429337..32429556,32430754..32431016,32432166..32432498, 32432936..32433186,32433283..32433729,32433835..32434952)) /locus_tag="TCM_025407" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003960t1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.45 coverage" mobile_element complement(32428312..32429104) /note="source:INTACT1330F_F382_scaffold_8-int 8463 9252" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(32428933..32429047,32429337..32429556, 32430754..32431016,32432166..32432498,32432936..32433186, 32433283..32433729,32433835..32434797)) /locus_tag="TCM_025407" /note="paralog of Thecc1EG003960t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10032.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N7D4" /translation="MESSWPSSSCDGIYQVTQHMASTQQSEGDCLSKDHFSSLPDRVH LDLKQNDFTDLLNIWDKWGATTRANFDRKYGHIARLLKVQVDEQLLKAIVQFWDPSYR CFVFNKVDMVPMIEEYSALLQIDLDNPDKIYWRGQKTGHRRKLAKMMGITSTEVDQNL RKKGDNECIPWSFLRSYIMKQRDTEQGQLVMALAIYGLVIFPKVLGHIEGGIIDFFEQ VVNKANPSPSILAETLRSLNYCRRKGEGRFVGCAQLLSIWIVSHFECKVDKFRKPFHL QTAPIREFCESEWPENRTKEQWISRFRELMSVEVTWRAPWMPHHPFVPMTHRLNTLEF AYGEPGFLKRIEEIAQAWKKTSRVDQGRYTDEVTTGYQIWHDQRVKDVVYPKGDALRG PVDPEPRDALLESELARKKSEAENASWKQRYEDLQKECEKMKREVSEQRKKVQKMERK YESLNDKFSATTSELQREIQEYEELEGVMTTYQQEYERLKQQSTRIQEWGESYRQAYT EKYNQMDYLVWQMREVAYKARSMAWKTDILRSQIFPVGKQEQQLINKGKRAIEEPAPS ENPPAQDSGNQREDPPYPPGFTPPHAQTSQRVHPQVMPSIYYNAPPPLGHQPTQGQFG PYLGINPAEPINVPDLDDPKEQEKLRKDSSQTGENEKDQKNSGVDGNPLPNHGRPTVN AIHEGMIRRVKKGIDEIQTPMDKVFEALSKINAITPEPIDTKKVGHDLAYSCKFHMGA IGHSIQNCDGFRQATEEVPECSFRSFEFVNATYVGERKVIPTPRLSVATKMGVKQTVG KGCRAGLGLGKNLQGINRPLTPMKNEERDEEPDGKIPVVYPVLLGEELSNWTATELPI IFKSSKM" mobile_element complement(32429205..32429596) /note="source:INTACT1330F_F382_scaffold_8-int 8032 8423" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32430686..32431155) /note="source:INTACT1330F_F382_scaffold_8-int 6473 6942" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32432130..32435477) /note="source:INTACT1330F_F382_scaffold_8-int 2146 5498" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32436331..32436662) /note="source:INTACT1330F_F382_scaffold_8-int 1036 1365" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32436583..32436675) /note="source:scaffold_5_CACTA_0584 7146 7238" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32436674..32439511 /note="source:scaffold_2_CACTA_0279 2945 5818" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32439530..32439844 /note="source:scaffold_1_CACTA_0006 8152 8470" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32439958..32441236 /note="source:scaffold_1_CACTA_0006 8466 9761" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(32441195..32441245) /note="source:scaffold_7_CACTA_0785 127 174" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(32441213..32441254) /note="source:scaffold_1_CACTA_0006 1 42" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32441348..32441806 /note="source:CACAO_M_E52278_F17_scaffold_7 2300 2772" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32444326..32444438) /note="source:scaffold_2_CACTA_0256 17587 17700" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32444458..32444745 /note="source:scaffold_7_CACTA_0785 5967 6259" /mobile_element_type="transposon:TIR/CACTA" gene complement(32444670..32449093) /locus_tag="TCM_025409" /note="dbxref CacaoGD:Thecc1EG025409" mRNA complement(join(32444670..32444919,32447025..32447466, 32447550..32447727,32448509..32449093)) /locus_tag="TCM_025409" /product="TMV resistance protein N" /inference="alignment:exonerate- protein:2:frave:gene04856.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025424t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(32447038..32447466,32447550..32447727, 32448509..32448831)) /locus_tag="TCM_025409" /note="paralog of Thecc1EG025424t1" /codon_start=1 /product="TMV resistance protein N" /protein_id="EOY10033.1" /translation="MCLTIDLQRLLEEKYGKTVANHSKNPFFMSNELDIETKAFAKMQ RLTLLQPDYIKVKGDYKNIPKGLIWLCWHGFPKEYLSTDLDISRLVVLEMRNNSLKHV WHNSKECIIFGCEKLTEVEDVIKLEPIENFEVEQIESLFDMNSIRSIELHIYNYITDT NKVTTPQVFYNSSITSCFVFGSEVPILFEYRSKGSQIYFSLSQNPSEKVSWLNLCIVY SLASQEIFEFLPSVHIVNETKQLTWFYFSSFIGIPKSNSNIILWLIHWPVKDYQMENG DLVSCKLLSSGLDIKEFGVTYVSEKKVIREDDS" mobile_element complement(32450788..32451740) /note="source:CACAO_MITE_S227_scaffold_9 2 983" /mobile_element_type="transposon:TIR/MITE" gene complement(32451918..32468801) /locus_tag="TCM_025411" /note="dbxref CacaoGD:Thecc1EG025411" mRNA complement(join(32451918..32452312,32458061..32458551, 32464679..32464788,32464882..32464969,32465074..32465162, 32465510..32465598,32468700..32468801)) /locus_tag="TCM_025411" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019530t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(32458096..32458551,32464679..32464788, 32464882..32464969,32465074..32465162,32465510..32465579)) /locus_tag="TCM_025411" /note="paralog of Thecc1EG019530t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10034.1" /translation="MKKGRKRARQCRMVGANGSNRHLMRRPIEATLVFMSLLKRPIAL LHSHSKSLVIMAYFVKWGNWGLGMDKEEGFVVLDDFFVVTVSFFYSNGTIVDKSQVAI LDGIVHLNGVFVVMNANNKQSLKESLQEAASVSNRNPTPSAAKGKPAAPLVLKTASLE IDIMSKEGIQTRENNVALMESSGMATQRNLHAPVEIALASQTWIETIPITTSLLLPQQ RANVEKIGVGINGVARVRECPKVDEGSHVRTEDFTSSIEMELEIREEDIMQD" mobile_element 32461298..32462121 /note="source:CACAO_MITE135_scaffold_9 2 836" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(32466753..32468214) /note="source:INTACT85_F9_scaffold_4-int 1 1462" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32470313..32474897 /note="source:CACAO_M_S_E32835_F9_scaffold_4 2 4597" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32474401..32477837) /note="source:CACAO_M_S_E66354_F74_scaffold_5 1888 5269" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32478473..32479064) /note="source:CACAO_PIF_E38_scaffold_2 1466 2056" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 32479993..32480679 /note="source:scaffold_4_CACTA_0482 5219 5898" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(32480674..32482173) /note="source:INTACT1604F_F75_scaffold_10-int 3296 4799" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(32483212..32484120) /note="source:CACAO_M_E12039_F17_scaffold_2 600 1522" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32484120..32485254) /note="source:INTACT242_F12_scaffold_1-int 3420 4549" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32485258..32486422) /note="source:CACAO_M_S_E85473_F233_scaffold_7 4478 5610" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32487456..32489587) /note="source:INTACT242_F12_scaffold_1-int 2445 4548" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32490571..32491040 /note="source:CACAO_M_E44587_F17_scaffold_6 916 1403" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32491046..32491572 /note="source:INTACT411_F19_scaffold_10-int 2667 3193" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32491575..32491713) /note="source:CACAO_M_S_E98862_F17_scaffold_8 1 139" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32491797..32491912) /note="source:INTACT1604F_F75_scaffold_10-int 521 636" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(32494006..32512702) /locus_tag="TCM_025414" /note="dbxref CacaoGD:Thecc1EG025414" mRNA complement(join(32494006..32495183,32495266..32495396, 32497172..32497613,32497699..32498571,32498660..32498995, 32499081..32500221,32502124..32502665,32502813..32503044, 32512655..32512702)) /locus_tag="TCM_025414" /product="TMV resistance protein N" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400031726.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027222t1" /inference="similar to AA sequence:Phytozome:POPTR_0007s04750.1" /note="quality class is strong-expresste, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.33 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc3963t2" CDS complement(join(32494638..32495183,32495266..32495396, 32497172..32497613,32497699..32498571,32498660..32498995, 32499081..32500221,32502124..32502623)) /locus_tag="TCM_025414" /note="paralog of Thecc1EG027222t1" /codon_start=1 /product="TMV resistance protein N" /protein_id="EOY10035.1" /db_xref="Phytozome:POPTR_0007s04750.1" /db_xref="TAIR:AT5G36930.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RVC7" /translation="MAVSMVHHQESSLSDSQYTYDVLLSFRGADTRKNFTDHLYMALV QAGIHTFRDDDEIGKGENIKNEIERAIYESKISIIVFSKNYASSTWCLNELVKIMEHS KFSKHIVLPIFYDVNPSQVKKQTGSFAAAFAGHEESFKSEMDMVQRWRAALTEVADLG GMLLEDGHEWQFIQDIIKQVQNKLHHTALYVPPIVVGIDSLVTCINWWLGDGSNKVGI ATICGIGGIGKTTIAKIVYNLNIQRFESYSFLADVREITQERKGLVHLQRQLIADILK GKVNKIHNSDDGITKIKEAIYRRRVLLVLDDVDDSEKITKIIGAQIPFHPGSKIIITS RHRCLLSDPFIRQMFDLEASSSYGELCKVFEVKELAFNDSLQLFKWYAFGQCHPIDSY MEYVKSVVEHCGGLPLALQVLGSSLSGKSINVWRSALEKLKAIPDSKIQKILRISYDS LQDDHDKNLFLDIACVFVGKDKDYTTTILDECDYYTAIGIENLINRSLLVVNEKNKLM MHQMIREIGRNIIRQESPNLGKRSRLWHKDAFDALREKIGTKTIRCLTIDLHRLLEDK YGKTIANHSKNPLLMSTEEDIETDAFAKMQRLKLLQLDYVKLKGDYKDFPRSLIWLCW HGFPLEYLPKNLYISKLVVLEMHNSSLKRVWNDTKYFLPNLKILNLSHSHGLLKILNL SCLHSLERLILKDCIKLITVDQSIGEIKTLTILNLKGCKSLKKLPRTIGSVESLEELI LSGCSTLDDVPRDLQNMKSLKVLNLDGTAICESNSWLSWLSLKISKGLGFFWVSLPCS LVKLSLQSCRLSDDVVPADFSYLPSLKSLNLSRNPIHSLPESIIHLTKLDELLLTCCK ELQRLPKLPTNGLLVKRSQSSYRISSLSYLLNLKRCIVFGCEKLTEVESVFKLVPIEN FEVEQIKSLFNMDFIKSIQLEIYSYITDTRMVTTPQVFHDCGITSCFISGSEVPIWFE YHSEGSKISFSLPQNPSEKVSWLNLCIVYSLVSDEIFEFLPSVHIINETKKLTWSYFS SFLGIPETNSNTILWLIHWPVKDYQLENGDLVTCKLSTFGLNVREFGVTCVSETKEMY EDDTPQYSQENEGTWKEIELKVNEELLKLDTSGNIRMQIDNYLEESKMIASPQVLYDC GIISIYGTYGFPEGRYSHHATGNKVSFIVPRSSGHHIGYLNLMAILFAEDDQIFDILS RIEIVNKTKDTKWIHHKCFIGIPKIKNNIYWFSSWRFMGELEDGDQVSCTVFSDLCVK ACAIDLIYELDDDLLHKCNSGYQHLGGKTTSSYWLFPLFVYHLFKSQRALYRIQSLNK LE" mobile_element complement(32507995..32509250) /note="source:INTACT674_F296_scaffold_6-int 4597 5837" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(32512749..32526662) /locus_tag="TCM_025417" /note="dbxref CacaoGD:Thecc1EG025417" mRNA complement(join(32512749..32513070,32513788..32513834, 32516860..32517286,32517356..32517483,32519351..32519792, 32519892..32520303,32523362..32523903,32526084..32526662)) /locus_tag="TCM_025417" /product="TMV resistance protein N" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0505s00200.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025419t1" /inference="similar to AA sequence:Phytozome:POPTR_0007s04750.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.10 coverage" CDS complement(join(32512876..32513070,32513788..32513834, 32516860..32517286,32517356..32517483,32519351..32519792, 32519892..32520303,32523362..32523861)) /locus_tag="TCM_025417" /note="paralog of Thecc1EG025419t1" /codon_start=1 /product="TMV resistance protein N" /protein_id="EOY10036.1" /db_xref="Phytozome:POPTR_0007s04750.1" /db_xref="TAIR:AT5G36930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S039" /translation="MAVSMVHHQEFSLSDSQYTYDVLLSFRGTDTRKNFTDHLYMALV QARIHTFRDADEIGRGENIKNEIERAIYESKISIIVFSKIYASSTWCLNELVKIMKHR KFSKHIVLPIFYGVNPSQVKKQTGSFAEAFARHEESFKSEMDMVQRWRAALRDVADLE GMLLEDGLFDDVMPSDLSYLPSLKSLNLSRNPIHSFPESIIHLTKLDELLLTCCKELK WLPMLPTSDLHVIMSQLLYKISSLPCLLNLKRCVVFGCEKLTEVQGVFMLKPIENFEV EQIKSLFTTDSIRSTELQIYNYLTDTKMVFHDSSITSCFVSRSEVPILFEYRSQGFAI SFSLPQNPSEKVSWLNLCIVYSLVSDEIFEFLPSVHIVNETKKLTCSYLSSFIGIPET NSNTILWLIHWPVMDYQLENGDLVSCKLSTFSLNIREFGVTCVSKTKVMYEDDTPQYS QENEDIWREIELKDEELLKLGSSENIKVQIYNDLEESTMIASPKFTCHSYDLSEDTCS RHANHAIGNKVSFVVARSSGQHIGYLKLVAILYAEEDNIFDFLSRIEIVNKTKDSKWI FYKHFIGIPKVKNNIYWFSLWRFMDELEDGDQVNCTVFSNLSVNRSTVDLEYEPDDDL LHKCNSGYQHLRGHTPIVDADMDFSFDMIGIKTVMIVPFIYVTYEDQIKRCGEKVKDQ LRRLYEMFDEKVIRKMKNKSVKEKDKEKKLKLWL" mobile_element 32525001..32525051 /note="source:scaffold_4_CACTA_0503 3229 3279" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32525008..32525062 /note="source:INTACT545_F87_scaffold_5-int 4781 4829" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32525056..32527184 /note="source:INTACT700_F304_scaffold_7-int 5 2117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32526655..32527243 /note="source:CACAO_M_E52694_F25_scaffold_8 3855 4462" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 32527523..32527582 /note="source:CACAO_M_E58877_F5_scaffold_9 20416 20476" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32527529..32527879) /note="source:CACAO_M_E69938_F9_scaffold_9 3535 3888" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32527877..32530629 /note="source:CACAO_M_E44709_F9_scaffold_6 4648 7376" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32532842..32532944 /note="source:CACAO_on_E18_scaffold_1 720 830" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 32543513..32547834 /locus_tag="TCM_025420" /note="dbxref CacaoGD:Thecc1EG025420" mRNA join(32543513..32543699,32543986..32544136, 32544593..32544887,32545619..32545787,32547606..32547834) /locus_tag="TCM_025420" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.22 coverage" CDS join(32543586..32543699,32543986..32544136, 32544593..32544887,32545619..32545754) /locus_tag="TCM_025420" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10037.1" /translation="MGGGCTYKDMGGLGMVELGLKNRAILNKWLWRFEMSRKNLVLGM GTSGYGIELRCAIFGWETEQWSKFFMVIKDQVLEREFDDKLICKGKSWDEDMIFELVK VRIAWWTKAKWLNLNILVKDLMRFLNQGENHSFSAIARRQVACSRPNDGWIKFNIDSA SRGNPRESSIGGILRDSRGTILDIFSKQGGKREPGPVAIGDVLTDDEEAIKIMFTKPM GVNEVNMTKVLAI" gene 32547993..32549119 /locus_tag="TCM_025421" /note="dbxref CacaoGD:Thecc1EG025421" mRNA 32547993..32549119 /locus_tag="TCM_025421" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS 32548226..32548651 /locus_tag="TCM_025421" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10038.1" /translation="MVGGRVIGENSDECGGWRWGLEMLLWVTEVRGAIWGGSDCFFFP GVLNQFMHELMWFPFGVGFGDGFLLVWGLGLMIGWSWILCFTVALMFGRDDLTGDSFF SRWCLSFVAKGFPLTFVGLMSFGCELRPWLRFVFEAAAG" mobile_element complement(32552518..32553320) /note="source:CACAO_M_E44150_F74_scaffold_5 4596 5404" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32553313..32553458) /note="source:CACAO_M_E44150_F74_scaffold_5 1369 1514" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32553459..32554088) /note="source:CACAO_M_E44709_F9_scaffold_6 14380 15009" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32554189..32554230 /note="source:CACAO_M_S_E66461_F76_scaffold_5 9202 9246" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32555412..32556612 /note="source:scaffold_5_CACTA_0614 1444 2645" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(32556614..32556673) /note="source:CACAO_M_E44150_F74_scaffold_5 1 61" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32556847..32559826 /note="source:CACAO_M_E43479_F273_scaffold_5 1 2976" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32563790..32564193 /note="source:INTACT164_F159_scaffold_7-int 10079 10511" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32564194..32566950 /note="source:CACAO_M_E44140_F15_scaffold_5 1 2757" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32566841..32566962) /note="source:INTACT143_F152_scaffold_7-int 1153 1276" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32566951..32568005 /note="source:INTACT164_F159_scaffold_7-int 946 1636" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32568006..32568314) /note="source:CACAO_M_E84908_F12_scaffold_10 4151 4430" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32568315..32571714 /note="source:CACAO_M_E3502_F323_scaffold_1 1 3436" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32571715..32572388) /note="source:CACAO_M_E84908_F12_scaffold_10 3424 4155" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32572468..32573496) /note="source:CACAO_M_E84908_F12_scaffold_10 2399 3439" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32573960..32574047 /note="source:INTACT164_F159_scaffold_7-int 1933 2022" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32574085..32574695 /note="source:INTACT164_F159_scaffold_7-int 2018 2734" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32575290..32580941 /note="source:INTACT164_F159_scaffold_7-int 2722 8318" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32581026..32581982 /note="source:INTACT164_F159_scaffold_7-int 8298 10121" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32582077..32582420) /note="source:INTACT126_F14_scaffold_3-int 15797 16139" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32582421..32585899 /note="source:CACAO_M_E44143_F323_scaffold_5 1 3479" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32585900..32586737 /note="source:CACAO_M_S_E118676_F14_scaffold_9 12112 12947" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(32592885..32603053) /locus_tag="TCM_025424" /note="dbxref CacaoGD:Thecc1EG025424" mRNA complement(join(32592885..32594084,32594170..32594297, 32596021..32596462,32596547..32597422,32597506..32599075, 32601524..32601572,32602890..32603053)) /locus_tag="TCM_025424" /product="TMV resistance protein N, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025414t1" /inference="similar to AA sequence:Phytozome:POPTR_0007s04750.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.22 coverage" CDS complement(join(32593530..32594084,32594170..32594297, 32596021..32596462,32596547..32597422,32597506..32599075, 32601524..32601552)) /locus_tag="TCM_025424" /note="paralog of Thecc1EG025414t1" /codon_start=1 /product="TMV resistance protein N, putative" /protein_id="EOY10039.1" /db_xref="Phytozome:POPTR_0007s04750.1" /db_xref="TAIR:AT5G36930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RVC7" /translation="MTSFNASNPRYESQFIQDIIKQVQTKLHRTALYVPPYLVGIDFL VTCINWWLGDGSNKVGIATICGIGGIGKTTIAKVVYNLNIQKFEGYSFLADVRETTEE RNGLVRLQRQLISDILKGKANKIYNSDDGITKIKEAICRRRVLLVLDDVDDSDKITKI IGAQIPFHLGSKIIITSRHRCLLSDPFIRQMFDLEVSSSYGELCKVFEVKELAFNESL QLFNRYAFGQNDPIDSYMEYARSVVKHCGGLPLALQVLGSSLSGKSITTWRNALEKLK AIPDSKIQKILRISYDSLQDDHDKNLFLDIACVFVGKDRDYTTTILDGCDYYTTIGIE NLMNRSLLVVNEKNKLMMHQMIKDIGRNIIRQESPDLGKRSRLWHKDAFDALRGKIVR KTSFSSTFFYATYFVMSYFFLTKLFFLQQGTKTITCLTIDLRRLLEEKYGKTIADHSK YPFLMSNEVDIEIEAFAKMQRLKLLQLDYVKLKRDYKDFPRSLIWLCWHGFPQEYLST NLDISRLVVLEMCNSSLKHVWSDTKYFLPNLKILNLSHSHGLFKILNLSGLHSLQRLM LKHCIKLIEVDQSIGEIKTLIVLNLKGCKSLKKLPRTIGSLESLEELILSGCSTFDDV PRDLQNMKSLRVLSLDGTAIYESNSWLSWLSLKRSKELGFFWASLPCSLVKLSLENCR LSDDAMPVDLSYLPSLKSLNLSRNPIHSLPESIIRLTKLDELLLTCCKELQWLPKLPT SGLSKIMVKSLIRFISSLPCLLNFKKCIVFGCEKLTEVEDVFKLEPIENFEVEQIESL FNMNSIRSIELQIYNYITDTKMVATPQVIYDSGITSCFVSGSEVPILFEHHFEGSKIS FSLSQNPGEKVSWLNLCVVYSLVSHEIFEFTPSVHIANETKQLKWLYVSSFIGIPETN SNTILWLIHWPVKDYQMENGDLVSCKLVSSGLDIKEFGVTYGSEKKAIHENDSRLCYQ ENEDIWREIEIKDEELLKLGSSGNIKMQIDNDLEESKMIASPKVLYDYGIISIFDTSE LLESSYGHHAHYAIGTKVSFVVAQRPAQHIGYLNLVAFLVAEDDKIFDFLSRIEIVNK TKDNKWIYYKRFTGIPQVKNNIFWLSSWRFMGELEDGDQVSCTVFSDLCVKGCVIDFI YEPDNDLIRKCNFGHQHLQSKTLNSYWLFPLFVHHLFKSQRTFYRIQNLDKLE" mobile_element 32599785..32599888 /note="source:scaffold_4_CACTA_0510 2109 2212" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(32606712..32607442) /note="source:INTACT89_F140_scaffold_9-int 8085 8815" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32610114..32610735) /note="source:INTACT89_F140_scaffold_9-int 4787 5408" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32614727..32615358) /note="source:INTACT60_F127_scaffold_9-int 13954 14580" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32616981..32617252 /note="source:scaffold_4_CACTA_0510 2402 2671" /mobile_element_type="transposon:TIR/CACTA" gene complement(32617722..32626323) /locus_tag="TCM_025427" /note="dbxref CacaoGD:Thecc1EG025427" mRNA complement(join(32617722..32618698,32625167..32625264, 32625412..32625495,32625600..32625681,32626020..32626323)) /locus_tag="TCM_025427" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01026098001.2" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.16 coverage" CDS complement(join(32618446..32618698,32625167..32625264, 32625412..32625495,32625600..32625681,32626020..32626195)) /locus_tag="TCM_025427" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10040.1" /translation="MGRQVTKEGRKKTRQCWTVGANGGNGYLNALYIITTFKIDDGRE DFKTFTIDNNLDYDSEEAHLSNFDAYVTHQEIDCNSHSKSLVIMAYFVEWGNWGHGMD GEEGFGVLDDFFVAILDGIVHLNKVFVANEGELSAFNSHLMIAHRCLINRYKFSCSSS MTVSMVEESLSISRCPYDVFLSFRGADTRKNFTDHLYMVLVHVGIHTFRDDDKIERGE KIRDKIERAIYE" mobile_element 32621797..32621936 /note="source:scaffold_4_CACTA_0482 4522 4693" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32629546..32635704 /note="source:INTACT756_F2_scaffold_5-int 1 6159" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32636609..32637412) /note="source:scaffold_5_CACTA_0601 13620 14418" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32637412..32638693 /note="source:INTACT579_F10_scaffold_3-int 3179 4455" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 32638794..32640140 /note="source:CACAO_M_E69938_F9_scaffold_9 4904 6274" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32640241..32640746) /note="source:CACAO_M_E58877_F5_scaffold_9 17388 17893" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32643020..32645406) /note="source:INTACT1427F_F390_scaffold_9-int 9627 12035" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32645507..32645888) /note="source:CACAO_M_E12044_F76_scaffold_2 13339 13721" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32650218..32650676) /note="source:CACAO_M_E58877_F5_scaffold_9 9849 10307" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32651006..32652350) /note="source:CACAO_M_E58877_F5_scaffold_9 8256 9575" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32653420..32653940) /note="source:INTACT700_F304_scaffold_7-int 1121 1626" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32653550..32653951 /note="source:CACAO_M_E69938_F9_scaffold_9 4846 5247" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32654225..32655067 /note="source:INTACT579_F10_scaffold_3-int 4899 5744" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(32655067..32655625) /note="source:CACAO_M_E27_F84_scaffold_1 3405 3963" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 32655621..32656546 /note="source:INTACT566_F257_scaffold_7-int 2698 3630" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(32656547..32658063) /note="source:CACAO_M_E71478_F17_scaffold_10 1 1517" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32658064..32659944 /note="source:INTACT1608F_F65_scaffold_10-int 1343 3230" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32660390..32660689 /note="source:scaffold_4_CACTA_0505 17170 17460" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(32664444..32664508) /note="source:INTACT1391F_F387_scaffold_8-int 11705 11776" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32668835..32670549) /note="source:INTACT1604F_F75_scaffold_10-int 3305 5022" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(32671596..32671708) /note="source:INTACT1604F_F75_scaffold_10-int 524 636" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 32671940..32672082 /note="source:CACAO_Mariner_E176_scaffold_6 2091 2214" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 32672083..32674996 /note="source:CACAO_M_E44144_F86_scaffold_5 1 2914" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 32676869..32684433 /locus_tag="TCM_025432" /note="dbxref CacaoGD:Thecc1EG025432" mRNA join(32676869..32677205,32678203..32678282, 32678787..32678974,32679379..32680225,32680424..32680533, 32681227..32681286,32682323..32682373,32683022..32683136, 32683465..32684226) /locus_tag="TCM_025432" /product="Zinc ion binding,DNA binding, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s31330.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006098t3" /inference="similar to AA sequence:Phytozome:GSVIVT01023195001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04570t00001" mRNA join(32677015..32677205,32678203..32678282, 32678787..32678974,32679379..32680225,32680424..32680533, 32681227..32681286,32682323..32682373,32683022..32683092, 32683460..32684433) /locus_tag="TCM_025432" /product="Zinc ion binding,DNA binding, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s31330.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006098t3" /inference="similar to AA sequence:Phytozome:GSVIVT01023195001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8164t3; inference alignment:Newbler:10:TSA:cgbaB_g04570t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc330t3" CDS join(32677096..32677205,32678203..32678282, 32678787..32678974,32679379..32680225,32680424..32680533, 32681227..32681286,32682323..32682373,32683022..32683136, 32683465..32683658) /locus_tag="TCM_025432" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG006098t3" /codon_start=1 /product="Zinc ion binding,DNA binding, putative isoform 1" /protein_id="EOY10041.1" /db_xref="Phytozome:GSVIVT01023195001" /db_xref="TAIR:AT5G63700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TGP5" /translation="MSKNKGKKKVKAEKEDEAEDWCFVCKDGGKLLLCDFKGCGKAYH PVCVGKKNSVLKSEGRWTCCRHSCSVCGGPPRFYCLCCPDAVCRLCARSAEFVSVKLK KGLCKTCIEVTLLAENNAEFNSQGVKMDFEDPDTEEFMFKGYLEIIMEQEDLTFDDLH RAALKKENYDSSSDSDKIEDEDAVVTISDGDSDTDFAVIDNSLGKRKKSEVRDYVGWG SKPLINFLKSVGIDATEKLSKFQVDIIISKYILEKNLFREEGKKKTVLCDEKLYSLFQ KKQVHKNKIYDLLEAHFVDTLGQSNSDENENDSGSCSGNEDEHIIAVCKKQRTLSTDK VPLEEKVDYAVQKNCYASIVAENIKLVYLRRSLVEELLMQSDNFEDKVVGSFVRVKRM HGNCSIRTSFQLLQVTGIKKTSNAKVDRGILLEVSCMPVDICIDMLNDGDISEEECED LRQRMKDGLLRKPTVVELEQKAKSLHEDITKNWIRRQLVSLQNKIDFAHEKGRRYIYP FYDVELYCRVSHKRFLDEREMLKKSSEQQRLLLKLPRVIAEEIEPDPTARDSSENNCS NGSGKLQCPAVNQADGGA" CDS join(32677096..32677205,32678203..32678282, 32678787..32678974,32679379..32680225,32680424..32680533, 32681227..32681286,32682323..32682373,32683022..32683092, 32683460..32683658) /locus_tag="TCM_025432" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG006098t3" /codon_start=1 /product="Zinc ion binding,DNA binding, putative isoform 2" /protein_id="EOY10042.1" /db_xref="Phytozome:GSVIVT01023195001" /db_xref="TAIR:AT5G63700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TGP5" /translation="MSKNKGKKKVKAEKEDEAEDWCFVCKDGGKLLLCDFKGCGKAYH PVCVGKKNSVLKSEGRWTCCRHSCSVCGGPPRFYCLCCPDAVCRLCARSAEFVSVKLK KGLCKTCIEVTLLAENNAEFNSQGVKMDFEDPDTEEFMFKGYLEIIMEQEDLTFDDLH RAALKKENYDSSSDSDKIEDEDAVVTISDGDSDTDFAVIDNSLGKRKKSEVRDYVGWG SKPLINFLKSVGIDATEKLSKFQVDIIISKYILEKNLFREEGKKKTVLCDEKLYSLFQ KKQVHKNKIYDLLEAHFVDTLGQSNSDENENDSGSCSGNEDEHIIAVCKKQRTLSTDK VPLEEKVDYAVQKNCYASIVAENIKLVYLRRSLVEELLMQSDNFEDKVVGSFVRVKRM HGNCSIRTSFQLLQVTGIKKTSNAKVDRGILLEVSCMPVDICIDMLNDGDISEEECED LRQRMKDGLLRKPTVVELEQKAKSLHEDITKNWIRRQLVSLQNKIDFAHEKGRRYMLE RFLDEREMLKKSSEQQRLLLKLPRVIAEEIEPDPTARDSSENNCSNGSGKLQCPAVNQ ADGGA" mRNA join(32679320..32680225,32680424..32680533, 32681227..32681286,32682323..32682373,32683022..32683693, 32683815..32683840) /locus_tag="TCM_025432" /product="Binding protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s31330.1" /inference="similar to AA sequence:ricco:30225.m001707" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc330t9; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc330t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8164t4" CDS join(32679385..32680225,32680424..32680533, 32681227..32681286,32682323..32682373,32683022..32683168) /locus_tag="TCM_025432" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30225.m001707" /codon_start=1 /product="Binding protein, putative isoform 3" /protein_id="EOY10043.1" /db_xref="TAIR:AT5G63700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RHP0" /translation="MDFEDPDTEEFMFKGYLEIIMEQEDLTFDDLHRAALKKENYDSS SDSDKIEDEDAVVTISDGDSDTDFAVIDNSLGKRKKSEVRDYVGWGSKPLINFLKSVG IDATEKLSKFQVDIIISKYILEKNLFREEGKKKTVLCDEKLYSLFQKKQVHKNKIYDL LEAHFVDTLGQSNSDENENDSGSCSGNEDEHIIAVCKKQRTLSTDKVPLEEKVDYAVQ KNCYASIVAENIKLVYLRRSLVEELLMQSDNFEDKVVGSFVRVKRMHGNCSIRTSFQL LQVTGIKKTSNAKVDRGILLEVSCMPVDICIDMLNDGDISEEECEDLRQRMKDGLLRK PTVVELEQKAKSLHEDITKNWIRRQLVSLQNKIDFAHEKGRRYIYPFYDVELYCRVSH SNVCLVTTNT" gene complement(32683999..32686303) /locus_tag="TCM_025433" /note="dbxref CacaoGD:Thecc1EG025433" mRNA complement(join(32683999..32684422,32684635..32685187, 32685294..32685358,32685526..32685549,32685643..32686303)) /locus_tag="TCM_025433" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021921001" /inference="similar to AA sequence:Phytozome:POPTR_0005s04360.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.29 coverage" CDS complement(join(32684390..32684422,32684635..32685187, 32685294..32685358,32685526..32685549,32685643..32686146)) /locus_tag="TCM_025433" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10044.1" /db_xref="Phytozome:POPTR_0005s04360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AWL3" /translation="MRVRLCEKLLTIYPSDKSTLRRFQEPLTLDIYDCGSLQEVFNLQ GIPVEETKAAVATQLSKLYLCKLPNLKFVWNKDPQGILTFQNLQLLSVRKCESLKHIF PTSVAKGLAQLEILEVKECGLEEIVAKEEGIEEAIEFGFPRLSTLELCHLTKLKCFYP GTHTTHWPQPLFLFEKVIHQLDELSLNRDDIASITDRRSLLWFLVNSESYLRGLPYQR VIQKLESIEVWECDLLSNLAPTASFQSHTALDVWNCQGMINLVSSSTARTLVQLMDMR IRECNKLTVIVAEEEGDRGDKIVFQNLKFLKFQSLERLTSFCQGNLGLDFPALEKVIV EQCPNMNSFCQGKLITGKLRVKPREGKGTGRQTDDLNADIKRLSEEEKPSREGRTQQS " gene complement(32685675..32688229) /locus_tag="TCM_025434" /note="dbxref CacaoGD:Thecc1EG025434" mRNA complement(join(32685675..32686937,32687078..32687254, 32687658..32688229)) /locus_tag="TCM_025434" /product="Cc-nbs-lrr resistance-like protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021921001" /inference="similar to AA sequence:Phytozome:POPTR_0005s04360.1" /note="quality class is strong, express is strong, homology is paralog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2267t1" CDS complement(join(32686410..32686937,32687078..32687254, 32687658..32688206)) /locus_tag="TCM_025434" /codon_start=1 /product="Cc-nbs-lrr resistance-like protein" /protein_id="EOY10045.1" /db_xref="Phytozome:POPTR_0005s04360.1" /translation="MLLKKSEALYLNLDELEGVKSLLYELDHEGFPNLKYLHVKSGSN IEYIIHSKQWIISKAFPVLESLFLQNLTNLKKICHGQLPPESFSRLKNVKVASCKKLK NLFSFSEARVLLQLEEIEVNDCENVTEIISEEKAIDDSEAMDKLVFRQLRSLRLQSLP QLICFCSREVHPKTSSTRSTSDKSSCCSEILDDNEATNKSVSSLSRSLRLQSLSKLCF CCREVSNIETTSTSSRDMTLLNQKILFPSKDFTSFHCIQNLTSLVIRDCNSPQHLFSV SVATTLMQLKFLEINKCEMMRAILVTEETGQVIYKVSFSQLNSLKLINLCRLKGFCSG NSILIEFPSLKRLEIDQCSELKEFVFKSISIDRKPQDTDSDSSLKTPLFNEKVLRNLF IFLYFPLYFHYLSRYTLTRSKGFIP" gene complement(32688365..32692559) /locus_tag="TCM_025435" /note="dbxref CacaoGD:Thecc1EG025435" mRNA complement(join(32688365..32690457,32691977..32692559)) /locus_tag="TCM_025435" /product="Cc-nbs-lrr resistance-like protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021921001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046053t1" /inference="similar to AA sequence:Phytozome:POPTR_0185s00210.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.21 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc7786t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc7944t1" CDS complement(32688441..32690399) /locus_tag="TCM_025435" /note="paralog of Thecc1EG046053t1" /codon_start=1 /product="Cc-nbs-lrr resistance-like protein" /protein_id="EOY10046.1" /db_xref="Phytozome:POPTR_0185s00210.1" /db_xref="TAIR:AT4G27190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H475" /translation="MYNILDHIPAAAQCIFYTFDRILDPDKKVEKLKNEVDKLKNARN QVQKSVDVAIKNEQEILEGVHRWFIEVDKKLTEEEVKITKAEETARKRCFLESFPNFM SRYHLRKEVDKEAKAIAQLLKDGEFDGGAHIPASDISFKSREHALTEIINALKDANVN MIGVYGLAGVGKTTLVKEVARQAKESKLFDALAMVDVTKASDTENIQEELADQIDLVF TDNINITRLRADRIRQKLKSTKTLVILDDIRSRLNLKAIGIPFGHKLVACKILLTSRD LNVLSSEMGVENNFGISVLAEEEAWDLFKKMAGDGVEHPRLRSTAKEVSRGCACLPLA IVTVAKVLKNKSFIQRKAALNQLKWHNPSNLTEGTSSRNLTGIPADVYSAIKLSYDYL ESEEHRLTFLLCSLLGRKATMFNLLTYAMGLGLFQGIITLEEAGVKVEALINQLKCSY LLRDGFAHWQFSIHDIVRDVAMSIPFRGGNILSMTNEVTLKDWEDKIFAKNCTAISLL DNEPMELPDELNCERLQFLHISCKVSSLNVPGGFFARTSELKVLDLTNMNFSSLPSSI TQLANLCTLHLDKCLLKDIAIIGELKDLEILSLQRATIEELPEEIKQLTKLRSLNLSK TKIKAIPANLLSSLSRLEQLYLCESFVE" mobile_element complement(32691501..32691555) /note="source:scaffold_2_CACTA_0277 4814 4870" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32691509..32691550 /note="source:CACAO_on_E454_scaffold_2 1 400" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 32691551..32691887 /note="source:MITE_PIF_Tourist_9 81 423" /mobile_element_type="transposon:TIR/MITE" gene complement(32694260..32700197) /locus_tag="TCM_025436" /note="dbxref CacaoGD:Thecc1EG025436" mRNA complement(join(32694260..32694625,32694721..32694920, 32696290..32696355,32696438..32696497, 32696951..>32697067)) /locus_tag="TCM_025436" /product="ADP-ribosylation factor B1C isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g43910.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000691t4" /inference="similar to AA sequence:Phytozome:GSVIVT01024420001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2008t2; inference alignment:Newbler:10:TSA:cgbaP2_g00720t00002_C1" mRNA complement(join(32694380..32694634,32694721..32694920, 32696290..32696355,32696438..32696497,32696951..32697066, 32698102..32698192,32699993..32700197)) /locus_tag="TCM_025436" /product="ADP-ribosylation factor B1C isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma01g43910.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010392t1" /inference="similar to AA sequence:Phytozome:Glyma11g01380.3" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00720t00002_C1; inference alignment:Newbler:10:TSA:cgbaP2_g00720t00002_C1" CDS complement(join(32694726..32694920,32696290..32696355, 32696438..32696497,32696951..32697066,32698102..32698192, 32699993..32700049)) /locus_tag="TCM_025436" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG010392t1" /codon_start=1 /product="ADP-ribosylation factor B1C isoform 1" /protein_id="EOY10047.1" /db_xref="Phytozome:Glyma11g01380.3" /db_xref="TAIR:AT3G03120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C4IZ87" /translation="MGQTFRKLFDTFFGNTEMRVVMLGLDAAGKTTILYKLHIGEVLS TVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGK AKQEFQAIINDPFMRNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCA LRGDGLYEGLDWLAGTLKEMKAAGYSSLGSSSFE" CDS complement(join(32694726..32694920,32696290..32696355, 32696438..32696497,32696951..>32697067)) /locus_tag="TCM_025436" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG000691t4" /codon_start=1 /product="ADP-ribosylation factor B1C isoform 2" /protein_id="EOY10048.1" /db_xref="Phytozome:GSVIVT01024420001" /db_xref="TAIR:AT3G03120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C4IZ87" /translation="GFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD SLDRERIGKAKQEFQAIINDPFMRNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNR KWHIQGTCALRGDGLYEGLDWLAGTLKEMKAAGYSSLGSSSFE" gene complement(32701343..32705781) /locus_tag="TCM_025437" /note="dbxref CacaoGD:Thecc1EG025437" mRNA complement(join(32701343..32702650,32702984..32704052, 32704983..32705110,32705550..32705781)) /locus_tag="TCM_025437" /product="UDP-glucosyl transferase 78D2, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024419001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025438t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s12310.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.46 coverage; inference alignment:PASA:2:TSA:puevd3b024591t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8269t2" mRNA complement(join(32701343..32702728,32702984..32704052, 32704983..32705110,32705550..32705781)) /locus_tag="TCM_025437" /product="UDP-glucosyl transferase 78D2, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024419001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025438t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s12310.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8269t2" CDS complement(join(32701863..32702650,32702984..32703485)) /locus_tag="TCM_025437" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG025438t1" /codon_start=1 /product="UDP-glucosyl transferase 78D2, putative isoform 2" /protein_id="EOY10050.1" /db_xref="Phytozome:POPTR_0013s12310.1" /db_xref="TAIR:AT5G17050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LFJ8" /translation="MLQQVTGSGPHVAVLVFPFGTHAAPLLTITRRLASAAPDTLFSF FSTAQSNAYLFSTSHHNTTLPNIKAYNVSDGAPEGYVFVGEPLEDVELFMTVAQENFR KGILEVAVAETERKLSCLVTDAFLWFGKDLAEENGVPWVPFFVSGACPLSSHVYTDTI RQNFGVGGILFGNLESIFSRMVHRMGQVLPEAVAVFINSFEELDPVVTSDMKSKLKKF LNVGPLTLSTPPAPAVPDSYGCLTWLDKQKPATVAYISFGSVATPPPNELVALAEALE ASRVPFIWSLKDKSKVHLPNGFLDRPNGILVPWAPQIDVLAHGAVGVFISHGGYNSMQ ESMSSGVPMIVRPFFGDHGLNGRMVEHVWEIGVIVEGGIFTKKCVTSCLDLVLAQEKG KKMRENLKALKELAHRAVGPEGSSTKNFKALLDFVCS" CDS complement(join(32701863..32702728,32702984..32703485)) /locus_tag="TCM_025437" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG025438t1" /codon_start=1 /product="UDP-glucosyl transferase 78D2, putative isoform 1" /protein_id="EOY10049.1" /db_xref="Phytozome:POPTR_0013s12310.1" /db_xref="TAIR:AT5G17050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LFJ8" /translation="MLQQVTGSGPHVAVLVFPFGTHAAPLLTITRRLASAAPDTLFSF FSTAQSNAYLFSTSHHNTTLPNIKAYNVSDGAPEGYVFVGEPLEDVELFMTVAQENFR KGILEVAVAETERKLSCLVTDAFLWFGKDLAEENGVPWVPFFVSGACPLSSHVYTDTI RQNFGVGGMVGREDETLDFIPGMSNIRIRDLPEGILFGNLESIFSRMVHRMGQVLPEA VAVFINSFEELDPVVTSDMKSKLKKFLNVGPLTLSTPPAPAVPDSYGCLTWLDKQKPA TVAYISFGSVATPPPNELVALAEALEASRVPFIWSLKDKSKVHLPNGFLDRPNGILVP WAPQIDVLAHGAVGVFISHGGYNSMQESMSSGVPMIVRPFFGDHGLNGRMVEHVWEIG VIVEGGIFTKKCVTSCLDLVLAQEKGKKMRENLKALKELAHRAVGPEGSSTKNFKALL DFVCS" mobile_element complement(32705470..32706394) /note="source:scaffold_6_CACTA_0702 11980 12982" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32706627..32707223 /note="source:INTACT135F_F90_scaffold_2-int 12961 13549" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 32707224..32707408 /note="source:scaffold_9_CACTA_0932 2882 3569" /mobile_element_type="transposon:TIR/CACTA" gene complement(32708321..32723503) /locus_tag="TCM_025439" /note="dbxref CacaoGD:Thecc1EG025439" mRNA complement(join(32708321..32708688,32708787..32709434, 32709782..32711201,32711414..32711518,32711603..32711740, 32711813..32711950,32712036..32712143,32712355..32712465, 32712962..32713028,32713558..32713740,32713825..32713905, 32714017..32714102,32714510..32714599,32714728..32714808, 32714916..32715014,32715113..32715178,32715644..32715752, 32716019..32716116,32716498..32716608,32717063..32717122, 32717523..32717726,32718278..32718376,32718497..32718604, 32718991..32719035,32719130..32719192,32719400..32719477, 32719585..32719653,32719737..32719875,32720493..32720575, 32720654..32720761,32721116..32721187,32721306..32721398, 32721665..32721781,32723070..32723503)) /locus_tag="TCM_025439" /product="Exportin 1A isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024418001" /inference="similar to AA sequence:Phytozome:GSVIVT01024418001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc525t9; alternateUTRof:Thecc1EG025439t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8351t4" gene complement(32708324..32710322) /locus_tag="TCM_025438" /note="dbxref CacaoGD:Thecc1EG025438" mRNA complement(join(32708324..32708688,32708787..32709512, 32709782..32710322)) /locus_tag="TCM_025438" /product="UDP-glucosyl transferase 78D2, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s12310.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025437t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s12310.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01834t00001" CDS complement(join(32708549..32708688,32708787..32709512, 32709782..32710274)) /locus_tag="TCM_025438" /note="paralog of Thecc1EG025437t1" /codon_start=1 /product="UDP-glucosyl transferase 78D2, putative" /protein_id="EOY10054.1" /db_xref="Phytozome:POPTR_0013s12310.1" /db_xref="TAIR:AT5G17050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LFJ8" /translation="MPRLTHSDAHVAVLAFPFSTHAAPLLTIINRLAAASPATLFSFF STAQSNNSIFSTTSQQTKPNIKAYNVPDGVPDGYVFVGKPHEDIELFMEVAPENLRKG MEVAVAETGRKVSCLVTDAFFWFAKEMAEENGVPWVPFFVSGACPLSSHVYTDTIRQN FGVGGMVGREDETLDFIPGMSNIRIRDLPEGILFGNLESIFSRMVHRMGQVLPEAAAV FINSFEELDPVVTSDMKSKLKKFLNVGPLTLSTPPAPAVPDSYGCLTWLDKQKPATVA YISFGSVATPPPNELVALAEALEASMVPFIWSLRDKSKVHLPNGFLDRANGILVPWAP QIDVLAHGAVGVFISHGGYNSMQESMSSGVPMIVRPFFGDHGLNGRMVEHVWEIGVIV EGGIFTKKCVTSCXXLVLAQEKGKKMRENLKALKELAHRAVGPEGSSTKNFKALLDFV CS" mRNA complement(join(32708789..32709512,32709782..32711201, 32711414..32711518,32711603..32711740,32711813..32711950, 32712036..32712143,32712355..32712465,32712962..32713028, 32713558..32713740,32713825..32713905,32714017..32714102, 32714510..32714599,32714728..32714808,32714916..32715014, 32715113..32715178,32715644..32715752,32716019..32716116, 32716498..32716608,32717063..32717122,32717523..32717726, 32718278..32718376,32718497..32718604,32718991..32719035, 32719130..32719192,32719400..32719477,32719585..32719653, 32719737..32719875,32720493..32720575,32720654..32720761, 32721116..32721187,32721306..32721398,32721665..32721781, 32723070..32723488)) /locus_tag="TCM_025439" /product="Exportin 1A isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024418001" /inference="similar to AA sequence:Phytozome:GSVIVT01024418001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8351t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8351t4" mRNA complement(join(32708789..32709434,32709782..32711204, 32711414..32711518,32711603..32711740,32711813..32711950, 32712036..32712143,32712355..32712465,32712962..32713028, 32713558..32713740,32713825..32713905,32714017..32714102, 32714510..32714599,32714728..32714808,32714916..32715014, 32715113..32715178,32715644..32715752,32716019..32716116, 32716498..32716608,32717063..32717122,32717523..32717726, 32718278..32718376,32718497..32718604,32718991..32719035, 32719130..32719192,32719400..32719477,32719585..32719653, 32719737..32719875,32720493..32720575,32720654..32720761, 32721116..32721187,32721306..32721398,32721665..32721781, 32723070..32723488)) /locus_tag="TCM_025439" /product="Exportin 1A isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024418001" /inference="similar to AA sequence:Phytozome:GSVIVT01024418001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8351t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8351t4" CDS complement(join(32711079..32711201,32711414..32711518, 32711603..32711740,32711813..32711950,32712036..32712143, 32712355..32712465,32712962..32713028,32713558..32713740, 32713825..32713905,32714017..32714102,32714510..32714599, 32714728..32714808,32714916..32715014,32715113..32715178, 32715644..32715752,32716019..32716116,32716498..32716608, 32717063..32717122,32717523..32717726,32718278..32718376, 32718497..32718604,32718991..32719035,32719130..32719192, 32719400..32719477,32719585..32719653,32719737..32719875, 32720493..32720575,32720654..32720761,32721116..32721187, 32721306..32721398,32721665..32721781,32723070..32723168)) /locus_tag="TCM_025439" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Exportin 1A isoform 1" /protein_id="EOY10051.1" /db_xref="Phytozome:GSVIVT01024418001" /db_xref="TAIR:AT5G17020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94IV0" /translation="MAAERLRDLSQPIDVSLLDATVAAFYGTGSKEERAHADQILRDL QNNPDMWLQVVHILQHTKSLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIV QLSSNEASFRAERLYVNKLNIILVQILKHDWPARWQSFIPDLVAAAKTSETICENCMA ILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSVSQRTELIRATLS TLHAFLSWIPLGYIFESTLLETLLNFFPVPSYRNLTLQCLTEIAALNFGDYYDVQYIK MYNIFMVQFQTILPPTTNIPEAYAHGSSEEQAFIQNLALFFTSFYKFHIRVLETAQEN ISALLVGLEYLINISYVDDTEVFKVCLDYWNSLVLGLFDAHHNMDNPAVTANMMGLQV PLLPGMVDGLGAQLLQRRQLYAGTMSKLRMLMICRMAKPEEVLIVEDENGNIVRETMK DNDVLVQYKIMRETLIYLSHLDHEDTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSI SGSMMEEQENRFLVMVIRDLLNLCEITKGKDNKAVIASNIMYVVGQYPRFLRAHWKFL KTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGESEPFVSELLSALAT TVADLEPHQIHTFYESVGHMIQAESDPHKRDEYLQRLMELPNQKWVEIIGQARQSVDF LKDQDVIRTVLNILQTNTSVASSLGTYFLTQISLIFLDMLNVYRMYSELISSSIAEGG PFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQFVPPMMDPVLGDYARNLPD ARESEVLSLFATIINKYKAAMIDDVPRIFEAVFQCTLEMITKNFEDYPEHRLKFFSLL RAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQASEFC NQFYRTYFLTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGLLTEPLWDAATVP YPYPNNGMFVREYTIKLLSTSFPNMTAAEVTQFVNGLFESRNDLSTFKNHIRDFLVQS KEFSAQDNKDLYAEEAAVQRERERQRMLSIPGLIAPNEIQDEMLDS" CDS complement(join(32711079..32711201,32711414..32711518, 32711603..32711740,32711813..32711950,32712036..32712143, 32712355..32712465,32712962..32713028,32713558..32713740, 32713825..32713905,32714017..32714102,32714510..32714599, 32714728..32714808,32714916..32715014,32715113..32715178, 32715644..32715752,32716019..32716116,32716498..32716608, 32717063..32717122,32717523..32717726,32718278..32718376, 32718497..32718604,32718991..32719035,32719130..32719192, 32719400..32719477,32719585..32719653,32719737..32719875, 32720493..32720575,32720654..32720761,32721116..32721187, 32721306..32721398,32721665..32721781,32723070..32723168)) /locus_tag="TCM_025439" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Exportin 1A isoform 1" /protein_id="EOY10052.1" /db_xref="Phytozome:GSVIVT01024418001" /db_xref="TAIR:AT5G17020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94IV0" /translation="MAAERLRDLSQPIDVSLLDATVAAFYGTGSKEERAHADQILRDL QNNPDMWLQVVHILQHTKSLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIV QLSSNEASFRAERLYVNKLNIILVQILKHDWPARWQSFIPDLVAAAKTSETICENCMA ILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSVSQRTELIRATLS TLHAFLSWIPLGYIFESTLLETLLNFFPVPSYRNLTLQCLTEIAALNFGDYYDVQYIK MYNIFMVQFQTILPPTTNIPEAYAHGSSEEQAFIQNLALFFTSFYKFHIRVLETAQEN ISALLVGLEYLINISYVDDTEVFKVCLDYWNSLVLGLFDAHHNMDNPAVTANMMGLQV PLLPGMVDGLGAQLLQRRQLYAGTMSKLRMLMICRMAKPEEVLIVEDENGNIVRETMK DNDVLVQYKIMRETLIYLSHLDHEDTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSI SGSMMEEQENRFLVMVIRDLLNLCEITKGKDNKAVIASNIMYVVGQYPRFLRAHWKFL KTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGESEPFVSELLSALAT TVADLEPHQIHTFYESVGHMIQAESDPHKRDEYLQRLMELPNQKWVEIIGQARQSVDF LKDQDVIRTVLNILQTNTSVASSLGTYFLTQISLIFLDMLNVYRMYSELISSSIAEGG PFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQFVPPMMDPVLGDYARNLPD ARESEVLSLFATIINKYKAAMIDDVPRIFEAVFQCTLEMITKNFEDYPEHRLKFFSLL RAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQASEFC NQFYRTYFLTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGLLTEPLWDAATVP YPYPNNGMFVREYTIKLLSTSFPNMTAAEVTQFVNGLFESRNDLSTFKNHIRDFLVQS KEFSAQDNKDLYAEEAAVQRERERQRMLSIPGLIAPNEIQDEMLDS" CDS complement(join(32711079..32711204,32711414..32711518, 32711603..32711740,32711813..32711950,32712036..32712143, 32712355..32712465,32712962..32713028,32713558..32713740, 32713825..32713905,32714017..32714102,32714510..32714599, 32714728..32714808,32714916..32715014,32715113..32715178, 32715644..32715752,32716019..32716116,32716498..32716608, 32717063..32717122,32717523..32717726,32718278..32718376, 32718497..32718604,32718991..32719035,32719130..32719192, 32719400..32719477,32719585..32719653,32719737..32719875, 32720493..32720575,32720654..32720761,32721116..32721187, 32721306..32721398,32721665..32721781,32723070..32723168)) /locus_tag="TCM_025439" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Exportin 1A isoform 3" /protein_id="EOY10053.1" /db_xref="Phytozome:GSVIVT01024418001" /db_xref="TAIR:AT5G17020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94IV0" /translation="MAAERLRDLSQPIDVSLLDATVAAFYGTGSKEERAHADQILRDL QNNPDMWLQVVHILQHTKSLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIV QLSSNEASFRAERLYVNKLNIILVQILKHDWPARWQSFIPDLVAAAKTSETICENCMA ILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSVSQRTELIRATLS TLHAFLSWIPLGYIFESTLLETLLNFFPVPSYRNLTLQCLTEIAALNFGDYYDVQYIK MYNIFMVQFQTILPPTTNIPEAYAHGSSEEQAFIQNLALFFTSFYKFHIRVLETAQEN ISALLVGLEYLINISYVDDTEVFKVCLDYWNSLVLGLFDAHHNMDNPAVTANMMGLQV PLLPGMVDGLGAQLLQRRQLYAGTMSKLRMLMICRMAKPEEVLIVEDENGNIVRETMK DNDVLVQYKIMRETLIYLSHLDHEDTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSI SGSMMEEQENRFLVMVIRDLLNLCEITKGKDNKAVIASNIMYVVGQYPRFLRAHWKFL KTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGESEPFVSELLSALAT TVADLEPHQIHTFYESVGHMIQAESDPHKRDEYLQRLMELPNQKWVEIIGQARQSVDF LKDQDVIRTVLNILQTNTSVASSLGTYFLTQISLIFLDMLNVYRMYSELISSSIAEGG PFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQFVPPMMDPVLGDYARNLPD ARESEVLSLFATIINKYKAAMIDDVPRIFEAVFQCTLEMITKNFEDYPEHRLKFFSLL RAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQASEFC NQFYRTYFLTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGLLTEPLWDAATVP YPYPNNGMFVREYTIKLLSTSFPNMTAAEVTQFVNGLFESRNDLSTFKNHIRDFLVQS KEFSAQQDNKDLYAEEAAVQRERERQRMLSIPGLIAPNEIQDEMLDS" mobile_element complement(32724177..32724327) /note="source:CACAO_PIF_E119_scaffold_3 4528 4676" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(32726893..32727423) /note="source:scaffold_4_CACTA_0510 2108 2671" /mobile_element_type="transposon:TIR/CACTA" gene 32727669..32733538 /locus_tag="TCM_025440" /note="dbxref CacaoGD:Thecc1EG025440" mRNA join(32727669..32727849,32730111..32730376, 32730916..32731031,32731885..32731931,32732091..32732139, 32732760..32732833,32732916..32732979,32733218..32733538) /locus_tag="TCM_025440" /product="Endoplasmic reticulum retention defective 2B" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024417001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020311t1" /inference="similar to AA sequence:Phytozome:GSVIVT01024417001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00885t00001" CDS join(32727759..32727849,32730111..32730376, 32730916..32731031,32731885..32731931,32732091..32732139, 32732760..32732833,32732916..32732979,32733218..32733254) /locus_tag="TCM_025440" /note="paralog of Thecc1EG020311t1" /codon_start=1 /product="Endoplasmic reticulum retention defective 2B" /protein_id="EOY10055.1" /db_xref="Phytozome:GSVIVT01024417001" /db_xref="TAIR:AT3G25040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LJR8" /translation="MNIFRLAGDMTHLLSIVVLLLKIRTMKSCAGISLKTQELYVIVF LTRYLDLFTRYISFYNTVMKLVFIGTSICIVWYMRYHKVVKQTYSKDQDTFRHYFLIP PCFLLALLIHRDFNVMEVLWTFSLYLEALAIIPQLVLLQRSRNIDNLTGNYIFFLGME VNWYGIGKARFNIGLPGNYSSNLHSVFMISAYRALYLINWIYRFFMENFKFRWIPWIS GLVQTALYADFFYYYIKSWKNHEKLKLPA" gene complement(32734340..32735114) /locus_tag="TCM_025441" /note="dbxref CacaoGD:Thecc1EG025441" mRNA complement(join(32734340..32734843,32734994..32735114)) /locus_tag="TCM_025441" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS complement(join(32734520..32734843,32734994..32735077)) /locus_tag="TCM_025441" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10056.1" /translation="MSCRWKMLNNLNSTRHNDIACNFTKLRKANEAYFFTIVPQAYST AEQMEGSTKSGYWKATGETEQIDHHNEIVGFKRIFVFYCGEAPTAKESSWMMNEFSVN PSLVQDNELDLRTNVTKFCIAYVKLGPIFAYRA" gene 32739439..32745152 /locus_tag="TCM_025442" /note="dbxref CacaoGD:Thecc1EG025442" mRNA join(32739439..32740207,32744122..32745152) /locus_tag="TCM_025442" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s10860.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025447t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(32739510..32740207,32744122..32744503) /locus_tag="TCM_025442" /note="paralog of Thecc1EG025447t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10057.1" /translation="MIHPDCFLLNLASMETIQLPPLNLDMAVGILTTPPSDPNCRILF IDGNDDLIICSPGDSEYSKQKMEDPVLTMTRFGGKTYCLTPPVYSLLTIELEGSSPRF TKLITVGNESKLFSFEQTAPYLLDFFGEMFLVCKCSSLKSSDWATNFGVFKFDFDARE WVEVKSIGNNAIFLTDYCYGTCYPVADHSMRRNSIYYTQPDDRNLYVYDLEYQSITTF LPFPNVSDRRSDHDCLPPELLSLISSNLYAGDNALFRAICKTWRSITIAPPLPLPLPS PFDHADSPFPWLFHIPKSNTGRGKFFHPIYNYTWEMDLPAQLVGAVIRFSKYGWLLMA RDMVHPFLFHPLSKVIVDLPELPRA" mobile_element 32740764..32741010 /note="source:scaffold_2_CACTA_0276 15495 15732" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32750267..32753116 /note="source:INTACT66_F131_scaffold_7-int 1 2837" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 32765035..32766892 /note="source:CACAO_M_E44145_F4_scaffold_5 1 1858" /mobile_element_type="retrotransposon:LTR/Copia" gene 32772601..32774013 /locus_tag="TCM_025446" /note="dbxref CacaoGD:Thecc1EG025446" mRNA 32772601..32774013 /locus_tag="TCM_025446" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045510t1" /note="quality class is weak-utrpoor, express is none, homology is paralog medium, intron is none, protein is utrpoor_complete" CDS 32772735..32773031 /locus_tag="TCM_025446" /note="paralog of Thecc1EG045510t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10058.1" /translation="MPMTPGEKYVKCFDGHALRIFSSSHFMDFNLIIQSDSKVGLSWV TNNSQRPWEYWQIFNEMDALSHMIGNITFIHVPREGNSLAKLGVDRSSTFSASW" gene 32774381..32776311 /locus_tag="TCM_025447" /note="dbxref CacaoGD:Thecc1EG025447" mRNA join(32774381..32774534,32775128..32776311) /locus_tag="TCM_025447" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025442t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400067459" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS 32775137..32776081 /locus_tag="TCM_025447" /note="paralog of Thecc1EG025442t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10059.1" /db_xref="Phytozome:PGSC0003DMP400067459" /translation="MAKEATTEEERQSYSLPPCISQPYPWLVISHGKYNQRQTFFSVS QHRYYTKIIPEMRNKLICGSSFGWLVLVDRVSPNCFLLNLSSMETIQLPPLNFKLAIG ILTAPPSDPNCRILLIDGNHDFIFCSPGDSEFSKQKVEDFLYSMTTLGGKIYCLTLPE YSLLTMEFEGSSLRFTKLNTIRNESNIFHIEDNRSYLIEFFGEMLLVCKYLSLKSFEW THDIGVFKFDFCGREWVEVKSIGDNAIFLTDDFYGTCYPVVDSITRNSIYYTYSEDKN LYVYDLEDQSITTHLPCPIVSRPCSLHYWCMLSTANTS" mobile_element 32778447..32778613 /note="source:scaffold_8_CACTA_0857 4372 4539" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32780723..32783087 /note="source:INTACT10_F4_scaffold_6-int 1 2375" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 32783059..32785852 /note="source:CACAO_M_S_E64023_F13_scaffold_5 16848 19649" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32785851..32792249) /note="source:INTACT11_F4_scaffold_8-int 1 6415" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(32793902..32794184) /note="source:scaffold_2_CACTA_0276 15449 15733" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32793904..32796109 /note="source:CACAO_Again_on_E79_scaffold_3 1 2357" /mobile_element_type="transposon:TIR/hAT" gene 32800827..32807485 /locus_tag="TCM_025449" /note="dbxref CacaoGD:Thecc1EG025449" mRNA join(32800827..32801038,32802763..32803557, 32805136..32805703,32807459..32807485) /locus_tag="TCM_025449" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.39 coverage" CDS join(32801003..32801038,32802763..32803506) /locus_tag="TCM_025449" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10060.1" /translation="MLLSLSLSKRHKETTPTADTPAAKAARPIRIKDKLVKVAESLTS KIAERDAVAQDRANPDRVSLAVTLGPGRAAPAPATTLAPGRATPTLVPGRAAPTLAPG RATRTPALDRAAPNLAPGQATRTPAPDRAAPTLAPGRATRTPAPDRAAPTLAPGRATR TPAPDRVAPTPVPGRATLTPAPDRAVPTPAPGRAAPTPALGRHHPAPGPRSLVLGSHP SHPTPGSLPGRAHTSPVPGLRRATRIYGHAASAPSRRILRH" mobile_element complement(32802253..32802535) /note="source:scaffold_9_CACTA_0943 3900 4144" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32802586..32802638 /note="source:scaffold_2_CACTA_0253 7398 7450" /mobile_element_type="transposon:TIR/CACTA" gene 32805123..32817683 /locus_tag="TCM_025450" /note="dbxref CacaoGD:Thecc1EG025450" mRNA join(32805123..32805703,32816433..32817683) /locus_tag="TCM_025450" /product="F-box family protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400061503" /inference="similar to AA sequence:Phytozome:POPTR_0012s10870.1" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.25 coverage" mobile_element 32806885..32808384 /note="source:CACAO_M_E52662_F215_scaffold_7 13571 15080" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS 32816442..32817530 /locus_tag="TCM_025450" /codon_start=1 /product="F-box family protein" /protein_id="EOY10061.1" /db_xref="Phytozome:POPTR_0012s10870.1" /db_xref="TAIR:AT1G57790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T2T6" /translation="MENQDLTPPDEEKVEDMWSSLPPDLLSLIPSNLYAGDNAMFRAV CKTWRSITMAPPLPLPSPFDHADSLFPWLFHIPKSNNGRGKFFHPISNYTCEIDLPAQ LVGAVIHFSKYGWLLMARHRVHPFLFNPLTKEIIELPELPLDGIEYVRLMFFTSAPSP DCLVVVMNCRPQGHVWILKLGEGEWEFHYIVRENFDWTACNPILHKGLYYSLDCDGNL GVFALEDIDNSWVTYEMKFPWSHFNSIVQAFLVENEGELLAIFIKKNGQKIHVFKLHP TRNIWEPVPSLGDNMLFVSPGASFSKKALVRGTRNKIYGPNFWDKNGLFCFYSLTTAK YHSFFDNLSSKDSYNTKFLQNCSWFISM" mobile_element 32819863..32820037 /note="source:scaffold_9_CACTA_0943 5683 5859" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32822342..32824272 /note="source:CACAO_M_E70109_F106_scaffold_10 1 1948" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 32827797..32829044 /note="source:INTACT674_F296_scaffold_6-int 4599 5824" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32828877..32829885) /note="source:scaffold_6_CACTA_0701 1767 2872" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(32829546..32829975) /note="source:CACAO_M_E57346_F74_scaffold_9 2085 2530" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 32829829..32845913 /locus_tag="TCM_025451" /note="dbxref CacaoGD:Thecc1EG025451" mRNA join(32829829..32830021,32838313..32838789, 32839316..32839413,32840123..32840201,32840355..32840414, 32840579..32840645,32840732..32840856,32841236..32841337, 32841483..32841851,32841939..32841986,32842094..32842156, 32842883..32842963,32843211..32843309,32844155..32844292, 32845570..32845913) /locus_tag="TCM_025451" /product="Major facilitator superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400001134" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041781t1" /inference="similar to AA sequence:ricco:30073.m002244" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06002t00001" mobile_element 32830121..32830678 /note="source:INTACT726_F314_scaffold_5-int 13396 13899" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32836641..32836694) /note="source:CACAO_M_E42343_F106_scaffold_5 6730 6784" /mobile_element_type="retrotransposon:LTR/Copia" CDS join(32838745..32838789,32839316..32839413, 32840123..32840201,32840355..32840414,32840579..32840645, 32840732..32840856,32841236..32841337,32841483..32841851, 32841939..32841986,32842094..32842156,32842883..32842963, 32843211..32843309,32844155..32844292,32845570..32845701) /locus_tag="TCM_025451" /note="dbxref ricco:30073.m002244; paralog of Thecc1EG041781t1" /codon_start=1 /product="Major facilitator superfamily protein" /protein_id="EOY10062.1" /db_xref="TAIR:AT5G17010.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KFK8" /translation="MASDHEQPGLSSFGKVGKSSGEIGAEHEPLINGIHSSENYSASA AIFPFLFPALGGLLYGYDIGSTSCATISIESASLSGMSWYDLSSVEIGLITSGSLYGA LIGSVLAFNIADFLGRRRELITAAIMYLVGALVTAFAPDLVVMVIGRLVYGIGIGLAM HAAPMYIAETAPSQIRGLLISLKEFFIVLGMVAGYGIGSLLVETVAGWRYMYGASTPL AVIMAIGMWWLPASPRWLLLCAIQGKGDMQELRETAICCLCRLRGQSIGDSASEQVDE ILTELSYVGEEKEATLGEVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASIFQSAG FSAASDATRVSILLGLLKLIMTGAAVVVVDRLGRRPLLLGGVSGMVVSLFLLGSYYLF LDDVPAIAVAALLLYVGCYQLSFGPIGWLMISEVFPLRHRGRGLSIAVLVNFGANALV TFAFSPLEAWLGAGIVFYVFGVIAMLSLLFIFFIVPETKGLTLEEIEAKCL" gene complement(32845915..32847944) /locus_tag="TCM_025453" /note="dbxref CacaoGD:Thecc1EG025453" mRNA complement(join(32845915..32846434,32846519..32847944)) /locus_tag="TCM_025453" /product="UDP-glycosyltransferase 73C5" /inference="alignment:exonerate- protein:2:ricco:29579.m000198" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025454t1" /inference="similar to AA sequence:ricco:29579.m000198" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.40 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc170t11" CDS complement(join(32846079..32846434,32846519..32847497)) /locus_tag="TCM_025453" /note="dbxref ricco:29579.m000198; paralog of Thecc1EG025454t1" /codon_start=1 /product="UDP-glycosyltransferase 73C5" /protein_id="EOY10063.1" /db_xref="TAIR:AT2G36750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZQ94" /translation="MTPMIDIARLLAQQGVIVTIVTTPHNAARFKSILDRAIESGLSI RLVEFRFPCAESGLPEGCENFDMLPSFSLALNFFQAANMLKKPVQKLFEELMPRPSCI ISDVFLSYTLDIANRFQIPRIVFHGVCCFLLLCLHNLRVSKILERVTSESEYFVVPNM PDTAEFTKAQIPEVMYGNLKEFSEERRKADLASYGVVINTFEEMEPEYVKEYRKVRGN KAWCIGPVSLCNKDASDKAERGNKASVEEHRRLRWLDSQKPGSVVYACLGGLSNVIPS QSIELGLGLEASNRPFIWVIRGSDPSKEVEKWISEDGFEERTKGRGLVIRGISAGVPL ITWPLFADQFANEKMAVQILKAGVKVGVEVPVRWAEEEKVGVLVKKRDVEESIERLMD GGEEGEERRKRAKKLGEMAEKAVETGGSSHLNITQLIQDIMQIDCDKKQDST" gene complement(32847940..32856923) /locus_tag="TCM_025454" /note="dbxref CacaoGD:Thecc1EG025454" mRNA complement(join(32847940..32848765,32854954..32856923)) /locus_tag="TCM_025454" /product="UDP-glycosyltransferase 73C5" /inference="alignment:exonerate- protein:2:ricco:29579.m000198.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025453t1" /inference="similar to AA sequence:ricco:29579.m000198" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc170t10_C2" CDS complement(join(32848187..32848765,32854954..32856348)) /locus_tag="TCM_025454" /note="dbxref ricco:29579.m000198; paralog of Thecc1EG025453t1" /codon_start=1 /product="UDP-glycosyltransferase 73C5" /protein_id="EOY10064.1" /db_xref="TAIR:AT2G36750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZQ97" /translation="MATEVEPLHFVLFPFMAQGHMIPMVDTARLLAQQGIIITIVTTP HNAARFKTILDRAKESGLSIRLVELQFPCVESGLPEGCENFDMLPSLSLALNFLEAAN KLQEPVQKLFEELRPRPSCIISDTLLHYTLDIASQFQIPRVVFYGVCCFCLLCIYNLH LSKILEHITTDSHYLAVPNMPDKVEFTKSQLPVILDNKYLKEFCEQAGETDLASYGVV INTFEELEPEYVRKYRKARGCKVWCIGPVSLCNKDRLDKAQRGNQASVDENQCQRWLD SQEPGSVIYACLGSLSNVIPSQSIELGLGLEASNRPFIWVMRGSDTSKEVEKWILEDG FEKRTKGRGLVIRGWAAQVVILSHRAIGGFLTHCGWNSTIEAIVAGVPLITWPLFGDQ FCNEKLVVQILQIGVRIGVEEPLRWGDEAKVGVLVYKEDVKKAVEKLMEIGEEGEERR KRAKKLGEMANKALELGLGLEASNRPFIWVIRGSDTSKEVEKWISEDGFEERTKGRGL VIRGWAPQVLILSHPAIGGFLTHCGWNSTIEGISAGVPLITWPLFADQFVNEKLAAQI LKIGVKVGVEEPVRWAEEEKVGVLVKKNDVKKAIERLMDGGEEGEERRKRAKKLGEMA KKAVETGGSSHLNITQLIQDIMQRAYDRKQPST" gene 32850338..32854243 /locus_tag="TCM_025455" /note="dbxref CacaoGD:Thecc1EG025455" mRNA join(32850338..32850968,32851063..32851429, 32851698..32851845,32852175..32852536,32852786..32852887, 32853123..32853566,32853813..32854243) /locus_tag="TCM_025455" /product="Leucine-rich repeat protein kinase family protein, putative" /inference="alignment:exonerate- protein:2:ricco:30131.m007017" /inference="similar to AA sequence:Phytozome:POPTR_0008s03390.1" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS join(32850855..32850968,32851063..32851429, 32851698..32851845,32852175..32852536,32852786..32852887, 32853123..32853566,32853813..32853967) /locus_tag="TCM_025455" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein, putative" /protein_id="EOY10065.1" /db_xref="Phytozome:POPTR_0008s03390.1" /db_xref="TAIR:AT3G47570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N676" /translation="MPKNSNSPDKTILFVILEVANIAKYKSISIHLSLFLDEDPYQLG STVVVSGNELNDTDRQALLEFKAKIVGDELGILHSWNNSVHFCQWCGVKCGLGRQRLT KLDLRSLKLMGSSSPYIGSLSFLKVLNLRDNSFSQELPQEIGRLGRLRELELRGNFLG AGVNGLSGIVPPSIFNLSMIKTLDISSNQFHGSLPSKLGITMPVLETFYIYYVHGAIK YQVPFPLVTGNLQKQQELDLGINSLSGVIPPSLGNLKMLNQLGLNHNNLHGTIPSSLG KCENLVALDLSDNNLSGTIPPGVAGLSSLSMYLDLSSNQLTGVLPIEIGNLKNLGMVQ TDGVFENASATWVQGNNKLCGGTPDFQLPSCEGSFGSVYKGVLEENGTVIATKVLNLF SPGSSRRFMAECKALRNIRHRNLVKILTACSGFDYHGNDFKALVYEFMVNGSLEDWLH PSFDSNESEESVKKLNFYQRTNVAIDVACALGYLHHHCETSIVHCDLKPSNILLDDQF IGHVEYGMGSEVSTNGDVYSHSILSLEMFSGMRPTDEVFKEGLNLHNLVKAALPE" gene 32857742..32867332 /locus_tag="TCM_025456" /note="dbxref CacaoGD:Thecc1EG025456" mRNA join(32857742..32858449,32858880..32860350, 32860513..32860824,32861443..32861547,32861634..32861721, 32861805..32861926,32862858..32862922,32863882..32865014, 32866014..32866137,32866484..32867020,32867123..32867332) /locus_tag="TCM_025456" /product="Tetratricopeptide repeat-like superfamily protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene12581" /inference="similar to AA sequence:frave:gene12581" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8170t1" CDS join(32857913..32858449,32858880..32860350, 32860513..32860824,32861443..32861547,32861634..32861721, 32861805..32861926,32862858..32862922,32863882..32864439) /locus_tag="TCM_025456" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene12581" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein isoform 1" /protein_id="EOY10066.1" /db_xref="TAIR:AT5G27270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPJ1" /translation="MDSLKSTFLSSTTHLYPSFPLSKLPTTNPKIPIHSSIHPDPFTL SDGNPTQPKPKSRNPKKPLSDDNARRIINKRAQYLSVLRRNQGPRAMTPKWIKRTPEQ MVKYLEDERNGELYGKHVVAAIKAVRGMGESREGEVDVRRVMGSFVGKLSFREMCVVL KEQKNWRQVRDFFAWMKLQIMLLSSKMWRLIHCNYRLVLEQLCYRPSAIVYTIVLRAY GQVGKIKLAEQTFLEMLEAGCEPDEVACGTMLCTYARWGRHKAMLSFYSAVQEREITL STAVYNFMLSSLQKKSLHEKVKDLWRQMVDKGVAPNRFTYTVVINSLVKGGIFEEAVM TFDEMKKHDFVPEEATYSLLISSHTKDGNWQDALRLYEDMRSRGIVPSNYTCASLLTL YYKNEDYSKALSLFTEMERNKIRADEVIYGLLIRIYGKLGLYEDALRTFEEIERLGLL SDEKTYLAMAQVHLNSGNAEKALAVIQIMKSRNIWFSRFAYIVSLQCYVMSEDLDSAE ATFLALAKTGLPDTGSCNDMLRLYIRLNLTERAKNFIVQIRKDQVVFDEELYRAVVRI YCKEGMLEEIEQLTKEMGTNDSYKDNKFIQTFFRAMCGEHMGNQKVKVNVASNQLDTT ALGCLLRLYLECKDFGKMEEILKLLLETANSMSVLTQLASNLMKEGDISKAKALNDQV VKLSCSGDDATMASMIGLYGKEQKLKQARDVFTAVADSSTCGKLIYNSMIDAYVKCGK PETAYSLFKEANKKGHDLGAVAISKVVYSLTNFGKHQEAEELIRVSFQDNLGLDTVAY NTFIKAMLEAGKLRFATSIYERMLSMGVAPSIQTYNTLISVYGRGRKLDKAVETFNMA RNLGIALDEKAYMNLICYYGKAGKRDEASSLFSKMQEEGIIPGMASYNIMMNVYASAG LCDEVEKLFEAMQRDGCSPDSFTYLSLVQAYTECLKYAEAEQTIKSMQKRGIPPTCAH FNHLLYAFAKVGMTREAERVYGELVTAGLSPDLACYRTMLRGYIDYGLVEEGIDFFEQ IRDTAEPDRFIMSAAVHIYKYVGKETEAKSILDSMNNLGIPFLGNLKVGSKMKVP" mRNA join(32858006..32858449,32858946..32860350, 32860513..32860824,32861443..32861547,32861634..32861721, 32861805..32861929,32862858..32862922,32863882..32864541, 32864840..32865014,32866014..32866069,32866484..32866925) /locus_tag="TCM_025456" /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 5" /inference="alignment:exonerate-protein:2:frave:gene12581" /inference="similar to AA sequence:Phytozome:POPTR_0019s07590.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8170t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8170t1" mRNA join(32858006..32858449,32858946..32860350, 32860513..32860824,32861443..32861547,32861634..32861721, 32861805..32861926,32862857..32862922,32863882..32864541, 32864808..32865014,32866014..32866069,32866484..32866925) /locus_tag="TCM_025456" /product="Tetratricopeptide repeat (TPR)-like superfamily protein isoform 3" /inference="alignment:exonerate-protein:2:frave:gene12581" /inference="similar to AA sequence:Phytozome:POPTR_0019s07590.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8170t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8170t1; inference alignment:Newbler:10:TSA:cgbaB_g13723t00001" mRNA join(32858006..32858449,32858946..32860350, 32860513..32860824,32861443..32861547,32861634..32861721, 32861805..32861926,32862858..32862922,32863882..32864541, 32864808..32865014,32866014..32866137,32866484..32866925) /locus_tag="TCM_025456" /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene12581" /inference="similar to AA sequence:Phytozome:POPTR_0019s07590.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8170t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8170t1" mRNA join(32858006..32858449,32858946..32860350, 32860513..32860824,32861443..32861547,32861634..32861721, 32861805..32861926,32862858..32862922,32863882..32864541, 32864808..32865014,32866484..32866925) /locus_tag="TCM_025456" /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene12581" /inference="similar to AA sequence:Phytozome:POPTR_0019s07590.1" /note="transcript variant 8; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8170t5; alternateUTRof:Thecc1EG025456t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8170t1" mRNA join(32858006..32858449,32858946..32860350, 32860513..32860824,32861443..32861547,32861634..32861721, 32861805..32861926,32862858..32862922,32863882..32864541, 32864843..32865014,32866014..32866069,32866484..32866925) /locus_tag="TCM_025456" /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene12581" /inference="similar to AA sequence:Phytozome:POPTR_0019s07590.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8170t1; alternateUTRof:Thecc1EG025456t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8170t1" mRNA join(32858006..32858449,32858946..32860350, 32860513..32860824,32861443..32861547,32861634..32861721, 32861805..32861926,32862858..32862922,32863882..32863969, 32864132..32864541,32864843..32865014,32866484..32866925) /locus_tag="TCM_025456" /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 6" /inference="alignment:exonerate-protein:2:frave:gene12581" /inference="similar to AA sequence:ricco:30073.m002249" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8170t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8170t1; inference alignment:Newbler:10:TSA:cgbaB_g13723t00001" mRNA join(32858148..32858449,32858946..32860350, 32860513..32860824,32861443..32861547,32861634..32861721, 32861805..32861926,32862858..32862922,32863882..32863969, 32864132..32864541,32864843..32865014,32866014..32866480) /locus_tag="TCM_025456" /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 6" /inference="alignment:exonerate-protein:2:frave:gene12581" /inference="similar to AA sequence:ricco:30073.m002249" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1073t10; alternateUTRof:Thecc1EG025456t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8170t1; inference alignment:Newbler:10:TSA:cgbaB_g13723t00001" mRNA join(32858148..32858449,32858930..32860350, 32860513..32860824,32861443..32861547,32861634..32861721, 32861805..32861926,32862858..32862922,32863882..32864541, 32864843..32865122) /locus_tag="TCM_025456" /product="Tetratricopeptide repeat-like superfamily protein isoform 9" /inference="alignment:exonerate-protein:2:frave:gene12581" /inference="similar to AA sequence:Phytozome:POPTR_0019s07590.1" /note="transcript variant 9; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc745t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8170t1" CDS join(32858183..32858449,32858946..32860350, 32860513..32860824,32861443..32861547,32861634..32861721, 32861805..32861929,32862858..32862922,32863882..32864439) /locus_tag="TCM_025456" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 5" /protein_id="EOY10070.1" /db_xref="Phytozome:POPTR_0019s07590.1" /db_xref="TAIR:AT5G27270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPJ1" /translation="MTPKWIKRTPEQMVKYLEDERNGELYGKHVVAAIKAVRGMGESR EGEVDVRRVMGSFVGKLSFREMCVVLKEQKNWRQVRDFFAWMKLQLCYRPSAIVYTIV LRAYGQVGKIKLAEQTFLEMLEAGCEPDEVACGTMLCTYARWGRHKAMLSFYSAVQER EITLSTAVYNFMLSSLQKKSLHEKVKDLWRQMVDKGVAPNRFTYTVVINSLVKGGIFE EAVMTFDEMKKHDFVPEEATYSLLISSHTKDGNWQDALRLYEDMRSRGIVPSNYTCAS LLTLYYKNEDYSKALSLFTEMERNKIRADEVIYGLLIRIYGKLGLYEDALRTFEEIER LGLLSDEKTYLAMAQVHLNSGNAEKALAVIQIMKSRNIWFSRFAYIVSLQCYVMSEDL DSAEATFLALAKTGLPDTGSCNDMLRLYIRLNLTERAKNFIVQIRKDQVVFDEELYRA VVRIYCKEGMLEEIEQLTKEMGTNDSYKDNKFIQTFFRAMCGEHMGNQKVKVNVASNQ LDTTALGCLLRLYLECKDFGKMEEILKLLLETANSMSVLTQLASNLMKEGDISKAKAL NDQVVKLSCSGDDATMASMIGLYGKEQKLKQARDVFTAVADSSTCGKLIYNSMIDAYV KCGKPETAYSLFKEANKKGHDLGAVAISKVVYSLTNFGKHQEAEELIRVSFQDNLGLD TVAYNTFIKAMLEAGKLRFATSIYERMLSMGVAPSIQTYNTLISVYGRGRKLDKAVET FNMARNLGIALDEKAYMNLICYYGKAGSKRDEASSLFSKMQEEGIIPGMASYNIMMNV YASAGLCDEVEKLFEAMQRDGCSPDSFTYLSLVQAYTECLKYAEAEQTIKSMQKRGIP PTCAHFNHLLYAFAKVGMTREAERVYGELVTAGLSPDLACYRTMLRGYIDYGLVEEGI DFFEQIRDTAEPDRFIMSAAVHIYKYVGKETEAKSILDSMNNLGIPFLGNLKVGSKMK VP" CDS join(32858183..32858449,32858946..32860350, 32860513..32860824,32861443..32861547,32861634..32861721, 32861805..32861926,32862858..32862922,32863882..32864439) /locus_tag="TCM_025456" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 2" /protein_id="EOY10067.1" /db_xref="Phytozome:POPTR_0019s07590.1" /db_xref="TAIR:AT5G27270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPJ1" /translation="MTPKWIKRTPEQMVKYLEDERNGELYGKHVVAAIKAVRGMGESR EGEVDVRRVMGSFVGKLSFREMCVVLKEQKNWRQVRDFFAWMKLQLCYRPSAIVYTIV LRAYGQVGKIKLAEQTFLEMLEAGCEPDEVACGTMLCTYARWGRHKAMLSFYSAVQER EITLSTAVYNFMLSSLQKKSLHEKVKDLWRQMVDKGVAPNRFTYTVVINSLVKGGIFE EAVMTFDEMKKHDFVPEEATYSLLISSHTKDGNWQDALRLYEDMRSRGIVPSNYTCAS LLTLYYKNEDYSKALSLFTEMERNKIRADEVIYGLLIRIYGKLGLYEDALRTFEEIER LGLLSDEKTYLAMAQVHLNSGNAEKALAVIQIMKSRNIWFSRFAYIVSLQCYVMSEDL DSAEATFLALAKTGLPDTGSCNDMLRLYIRLNLTERAKNFIVQIRKDQVVFDEELYRA VVRIYCKEGMLEEIEQLTKEMGTNDSYKDNKFIQTFFRAMCGEHMGNQKVKVNVASNQ LDTTALGCLLRLYLECKDFGKMEEILKLLLETANSMSVLTQLASNLMKEGDISKAKAL NDQVVKLSCSGDDATMASMIGLYGKEQKLKQARDVFTAVADSSTCGKLIYNSMIDAYV KCGKPETAYSLFKEANKKGHDLGAVAISKVVYSLTNFGKHQEAEELIRVSFQDNLGLD TVAYNTFIKAMLEAGKLRFATSIYERMLSMGVAPSIQTYNTLISVYGRGRKLDKAVET FNMARNLGIALDEKAYMNLICYYGKAGKRDEASSLFSKMQEEGIIPGMASYNIMMNVY ASAGLCDEVEKLFEAMQRDGCSPDSFTYLSLVQAYTECLKYAEAEQTIKSMQKRGIPP TCAHFNHLLYAFAKVGMTREAERVYGELVTAGLSPDLACYRTMLRGYIDYGLVEEGID FFEQIRDTAEPDRFIMSAAVHIYKYVGKETEAKSILDSMNNLGIPFLGNLKVGSKMKV P" CDS join(32858183..32858449,32858946..32860350, 32860513..32860824,32861443..32861547,32861634..32861721, 32861805..32861926,32862858..32862922,32863882..32864439) /locus_tag="TCM_025456" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 2" /protein_id="EOY10069.1" /db_xref="Phytozome:POPTR_0019s07590.1" /db_xref="TAIR:AT5G27270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPJ1" /translation="MTPKWIKRTPEQMVKYLEDERNGELYGKHVVAAIKAVRGMGESR EGEVDVRRVMGSFVGKLSFREMCVVLKEQKNWRQVRDFFAWMKLQLCYRPSAIVYTIV LRAYGQVGKIKLAEQTFLEMLEAGCEPDEVACGTMLCTYARWGRHKAMLSFYSAVQER EITLSTAVYNFMLSSLQKKSLHEKVKDLWRQMVDKGVAPNRFTYTVVINSLVKGGIFE EAVMTFDEMKKHDFVPEEATYSLLISSHTKDGNWQDALRLYEDMRSRGIVPSNYTCAS LLTLYYKNEDYSKALSLFTEMERNKIRADEVIYGLLIRIYGKLGLYEDALRTFEEIER LGLLSDEKTYLAMAQVHLNSGNAEKALAVIQIMKSRNIWFSRFAYIVSLQCYVMSEDL DSAEATFLALAKTGLPDTGSCNDMLRLYIRLNLTERAKNFIVQIRKDQVVFDEELYRA VVRIYCKEGMLEEIEQLTKEMGTNDSYKDNKFIQTFFRAMCGEHMGNQKVKVNVASNQ LDTTALGCLLRLYLECKDFGKMEEILKLLLETANSMSVLTQLASNLMKEGDISKAKAL NDQVVKLSCSGDDATMASMIGLYGKEQKLKQARDVFTAVADSSTCGKLIYNSMIDAYV KCGKPETAYSLFKEANKKGHDLGAVAISKVVYSLTNFGKHQEAEELIRVSFQDNLGLD TVAYNTFIKAMLEAGKLRFATSIYERMLSMGVAPSIQTYNTLISVYGRGRKLDKAVET FNMARNLGIALDEKAYMNLICYYGKAGKRDEASSLFSKMQEEGIIPGMASYNIMMNVY ASAGLCDEVEKLFEAMQRDGCSPDSFTYLSLVQAYTECLKYAEAEQTIKSMQKRGIPP TCAHFNHLLYAFAKVGMTREAERVYGELVTAGLSPDLACYRTMLRGYIDYGLVEEGID FFEQIRDTAEPDRFIMSAAVHIYKYVGKETEAKSILDSMNNLGIPFLGNLKVGSKMKV P" CDS join(32858183..32858449,32858946..32860350, 32860513..32860824,32861443..32861547,32861634..32861721, 32861805..32861926,32862858..32862922,32863882..32864439) /locus_tag="TCM_025456" /note="encoded by transcript variant 8; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 2" /protein_id="EOY10073.1" /db_xref="Phytozome:POPTR_0019s07590.1" /db_xref="TAIR:AT5G27270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPJ1" /translation="MTPKWIKRTPEQMVKYLEDERNGELYGKHVVAAIKAVRGMGESR EGEVDVRRVMGSFVGKLSFREMCVVLKEQKNWRQVRDFFAWMKLQLCYRPSAIVYTIV LRAYGQVGKIKLAEQTFLEMLEAGCEPDEVACGTMLCTYARWGRHKAMLSFYSAVQER EITLSTAVYNFMLSSLQKKSLHEKVKDLWRQMVDKGVAPNRFTYTVVINSLVKGGIFE EAVMTFDEMKKHDFVPEEATYSLLISSHTKDGNWQDALRLYEDMRSRGIVPSNYTCAS LLTLYYKNEDYSKALSLFTEMERNKIRADEVIYGLLIRIYGKLGLYEDALRTFEEIER LGLLSDEKTYLAMAQVHLNSGNAEKALAVIQIMKSRNIWFSRFAYIVSLQCYVMSEDL DSAEATFLALAKTGLPDTGSCNDMLRLYIRLNLTERAKNFIVQIRKDQVVFDEELYRA VVRIYCKEGMLEEIEQLTKEMGTNDSYKDNKFIQTFFRAMCGEHMGNQKVKVNVASNQ LDTTALGCLLRLYLECKDFGKMEEILKLLLETANSMSVLTQLASNLMKEGDISKAKAL NDQVVKLSCSGDDATMASMIGLYGKEQKLKQARDVFTAVADSSTCGKLIYNSMIDAYV KCGKPETAYSLFKEANKKGHDLGAVAISKVVYSLTNFGKHQEAEELIRVSFQDNLGLD TVAYNTFIKAMLEAGKLRFATSIYERMLSMGVAPSIQTYNTLISVYGRGRKLDKAVET FNMARNLGIALDEKAYMNLICYYGKAGKRDEASSLFSKMQEEGIIPGMASYNIMMNVY ASAGLCDEVEKLFEAMQRDGCSPDSFTYLSLVQAYTECLKYAEAEQTIKSMQKRGIPP TCAHFNHLLYAFAKVGMTREAERVYGELVTAGLSPDLACYRTMLRGYIDYGLVEEGID FFEQIRDTAEPDRFIMSAAVHIYKYVGKETEAKSILDSMNNLGIPFLGNLKVGSKMKV P" CDS join(32858183..32858449,32858946..32860350, 32860513..32860824,32861443..32861547,32861634..32861721, 32861805..32861926,32862858..32862922,32863882..32863969, 32864132..32864439) /locus_tag="TCM_025456" /note="encoded by transcript variant 6; alternatively spliced; dbxref ricco:30073.m002249" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 6" /protein_id="EOY10071.1" /db_xref="TAIR:AT5G27270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPJ1" /translation="MTPKWIKRTPEQMVKYLEDERNGELYGKHVVAAIKAVRGMGESR EGEVDVRRVMGSFVGKLSFREMCVVLKEQKNWRQVRDFFAWMKLQLCYRPSAIVYTIV LRAYGQVGKIKLAEQTFLEMLEAGCEPDEVACGTMLCTYARWGRHKAMLSFYSAVQER EITLSTAVYNFMLSSLQKKSLHEKVKDLWRQMVDKGVAPNRFTYTVVINSLVKGGIFE EAVMTFDEMKKHDFVPEEATYSLLISSHTKDGNWQDALRLYEDMRSRGIVPSNYTCAS LLTLYYKNEDYSKALSLFTEMERNKIRADEVIYGLLIRIYGKLGLYEDALRTFEEIER LGLLSDEKTYLAMAQVHLNSGNAEKALAVIQIMKSRNIWFSRFAYIVSLQCYVMSEDL DSAEATFLALAKTGLPDTGSCNDMLRLYIRLNLTERAKNFIVQIRKDQVVFDEELYRA VVRIYCKEGMLEEIEQLTKEMGTNDSYKDNKFIQTFFRAMCGEHMGNQKVKVNVASNQ LDTTALGCLLRLYLECKDFGKMEEILKLLLETANSMSVLTQLASNLMKEGDISKAKAL NDQVVKLSCSGDDATMASMIGLYGKEQKLKQARDVFTAVADSSTCGKLIYNSMIDAYV KCGKPETAYSLFKEANKKGHDLGAVAISKVVYSLTNFGKHQEAEELIRVSFQDNLGLD TVAYNTFIKAMLEAGKLRFATSIYERMLSMGVAPSIQTYNTLISVYGRGRKLDKAVET FNMARNLGIALDEKAYMNLICYYGKAGKRDEASSLFSKMQEEGIIPGMASYNIMMNVY ASAGLCDEVEKLFEAMQRDGMTREAERVYGELVTAGLSPDLACYRTMLRGYIDYGLVE EGIDFFEQIRDTAEPDRFIMSAAVHIYKYVGKETEAKSILDSMNNLGIPFLGNLKVGS KMKVP" CDS join(32858183..32858449,32858946..32860350, 32860513..32860824,32861443..32861547,32861634..32861721, 32861805..32861926,32862858..32862922,32863882..32863969, 32864132..32864439) /locus_tag="TCM_025456" /note="encoded by transcript variant 7; alternatively spliced; dbxref ricco:30073.m002249" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 6" /protein_id="EOY10072.1" /db_xref="TAIR:AT5G27270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPJ1" /translation="MTPKWIKRTPEQMVKYLEDERNGELYGKHVVAAIKAVRGMGESR EGEVDVRRVMGSFVGKLSFREMCVVLKEQKNWRQVRDFFAWMKLQLCYRPSAIVYTIV LRAYGQVGKIKLAEQTFLEMLEAGCEPDEVACGTMLCTYARWGRHKAMLSFYSAVQER EITLSTAVYNFMLSSLQKKSLHEKVKDLWRQMVDKGVAPNRFTYTVVINSLVKGGIFE EAVMTFDEMKKHDFVPEEATYSLLISSHTKDGNWQDALRLYEDMRSRGIVPSNYTCAS LLTLYYKNEDYSKALSLFTEMERNKIRADEVIYGLLIRIYGKLGLYEDALRTFEEIER LGLLSDEKTYLAMAQVHLNSGNAEKALAVIQIMKSRNIWFSRFAYIVSLQCYVMSEDL DSAEATFLALAKTGLPDTGSCNDMLRLYIRLNLTERAKNFIVQIRKDQVVFDEELYRA VVRIYCKEGMLEEIEQLTKEMGTNDSYKDNKFIQTFFRAMCGEHMGNQKVKVNVASNQ LDTTALGCLLRLYLECKDFGKMEEILKLLLETANSMSVLTQLASNLMKEGDISKAKAL NDQVVKLSCSGDDATMASMIGLYGKEQKLKQARDVFTAVADSSTCGKLIYNSMIDAYV KCGKPETAYSLFKEANKKGHDLGAVAISKVVYSLTNFGKHQEAEELIRVSFQDNLGLD TVAYNTFIKAMLEAGKLRFATSIYERMLSMGVAPSIQTYNTLISVYGRGRKLDKAVET FNMARNLGIALDEKAYMNLICYYGKAGKRDEASSLFSKMQEEGIIPGMASYNIMMNVY ASAGLCDEVEKLFEAMQRDGMTREAERVYGELVTAGLSPDLACYRTMLRGYIDYGLVE EGIDFFEQIRDTAEPDRFIMSAAVHIYKYVGKETEAKSILDSMNNLGIPFLGNLKVGS KMKVP" CDS join(32858183..32858449,32858946..32860350, 32860513..32860824,32861443..32861547,32861634..32861721, 32861805..32861926,32862857..32862861) /locus_tag="TCM_025456" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein isoform 3" /protein_id="EOY10068.1" /db_xref="Phytozome:POPTR_0019s07590.1" /db_xref="TAIR:AT5G27270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPJ1" /translation="MTPKWIKRTPEQMVKYLEDERNGELYGKHVVAAIKAVRGMGESR EGEVDVRRVMGSFVGKLSFREMCVVLKEQKNWRQVRDFFAWMKLQLCYRPSAIVYTIV LRAYGQVGKIKLAEQTFLEMLEAGCEPDEVACGTMLCTYARWGRHKAMLSFYSAVQER EITLSTAVYNFMLSSLQKKSLHEKVKDLWRQMVDKGVAPNRFTYTVVINSLVKGGIFE EAVMTFDEMKKHDFVPEEATYSLLISSHTKDGNWQDALRLYEDMRSRGIVPSNYTCAS LLTLYYKNEDYSKALSLFTEMERNKIRADEVIYGLLIRIYGKLGLYEDALRTFEEIER LGLLSDEKTYLAMAQVHLNSGNAEKALAVIQIMKSRNIWFSRFAYIVSLQCYVMSEDL DSAEATFLALAKTGLPDTGSCNDMLRLYIRLNLTERAKNFIVQIRKDQVVFDEELYRA VVRIYCKEGMLEEIEQLTKEMGTNDSYKDNKFIQTFFRAMCGEHMGNQKVKVNVASNQ LDTTALGCLLRLYLECKDFGKMEEILKLLLETANSMSVLTQLASNLMKEGDISKAKAL NDQVVKLSCSGDDATMASMIGLYGKEQKLKQARDVFTAVADSSTCGKLIYNSMIDAYV KCGKPETAYSLFKEANKKGHDLGAVAISKVVYSLTNFGKHQEAEELIRVSFQDNLGLD TVAYNTFIKAMLEAGKLRFATSIYERMLSMGVAPSIQTYNTLISVYGRGRKLDKAVET FNMARNLGIALDEKAYMNLICYYGKAG" CDS join(32859042..32860350,32860513..32860824, 32861443..32861547,32861634..32861721,32861805..32861926, 32862858..32862922,32863882..32864439) /locus_tag="TCM_025456" /note="encoded by transcript variant 9; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein isoform 9" /protein_id="EOY10074.1" /db_xref="Phytozome:POPTR_0019s07590.1" /db_xref="TAIR:AT5G27270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPJ1" /translation="MLEAGCEPDEVACGTMLCTYARWGRHKAMLSFYSAVQEREITLS TAVYNFMLSSLQKKSLHEKVKDLWRQMVDKGVAPNRFTYTVVINSLVKGGIFEEAVMT FDEMKKHDFVPEEATYSLLISSHTKDGNWQDALRLYEDMRSRGIVPSNYTCASLLTLY YKNEDYSKALSLFTEMERNKIRADEVIYGLLIRIYGKLGLYEDALRTFEEIERLGLLS DEKTYLAMAQVHLNSGNAEKALAVIQIMKSRNIWFSRFAYIVSLQCYVMSEDLDSAEA TFLALAKTGLPDTGSCNDMLRLYIRLNLTERAKNFIVQIRKDQVVFDEELYRAVVRIY CKEGMLEEIEQLTKEMGTNDSYKDNKFIQTFFRAMCGEHMGNQKVKVNVASNQLDTTA LGCLLRLYLECKDFGKMEEILKLLLETANSMSVLTQLASNLMKEGDISKAKALNDQVV KLSCSGDDATMASMIGLYGKEQKLKQARDVFTAVADSSTCGKLIYNSMIDAYVKCGKP ETAYSLFKEANKKGHDLGAVAISKVVYSLTNFGKHQEAEELIRVSFQDNLGLDTVAYN TFIKAMLEAGKLRFATSIYERMLSMGVAPSIQTYNTLISVYGRGRKLDKAVETFNMAR NLGIALDEKAYMNLICYYGKAGKRDEASSLFSKMQEEGIIPGMASYNIMMNVYASAGL CDEVEKLFEAMQRDGCSPDSFTYLSLVQAYTECLKYAEAEQTIKSMQKRGIPPTCAHF NHLLYAFAKVGMTREAERVYGELVTAGLSPDLACYRTMLRGYIDYGLVEEGIDFFEQI RDTAEPDRFIMSAAVHIYKYVGKETEAKSILDSMNNLGIPFLGNLKVGSKMKVP" gene 32867689..32869817 /locus_tag="TCM_025457" /note="dbxref CacaoGD:Thecc1EG025457" mRNA join(32867689..32867852,32869189..32869273, 32869606..32869817) /locus_tag="TCM_025457" /product="NADH-ubiquinone oxidoreductase-related" /inference="alignment:exonerate- protein:2:ricco:30073.m002250" /inference="similar to AA sequence:ricco:30073.m002250" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8196t1" CDS join(32867736..32867852,32869189..32869273, 32869606..32869715) /locus_tag="TCM_025457" /note="dbxref ricco:30073.m002250" /codon_start=1 /product="NADH-ubiquinone oxidoreductase-related" /protein_id="EOY10075.1" /db_xref="TAIR:AT3G03070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M9M6" /translation="MAYSFLLKTIIRSSNLGSTTRNFSLVSSQISNHTAKWMQDTSKK SPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDLKEPAVCKYCGLRYVQEHH H" gene complement(32869837..32875934) /locus_tag="TCM_025458" /note="dbxref CacaoGD:Thecc1EG025458" mRNA complement(join(32869837..32871014,32871481..32871629, 32872053..32872386,32873117..32873207,32873614..32873923, 32874015..32874125,32874915..32875010,32875337..32875934)) /locus_tag="TCM_025458" /product="AAA-type ATPase family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma12g02020.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000369t1" /inference="similar to AA sequence:Phytozome:Glyma12g02020.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8198t1" CDS complement(join(32870501..32871014,32871481..32871629, 32872053..32872386,32873117..32873207,32873614..32873923, 32874015..32874125,32874915..32875010,32875337..32875693)) /locus_tag="TCM_025458" /note="paralog of Thecc1EG000369t1" /codon_start=1 /product="AAA-type ATPase family protein" /protein_id="EOY10076.1" /db_xref="Phytozome:Glyma12g02020.1" /db_xref="TAIR:AT5G16930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RXI0" /translation="MAKTYAMGLISALAAASASSSSSSLLSQTNNNIAFADGPFNFPL FSSPSPSSGSPQSSSGQLQSQPSVSPASTADKEASGSVRVRNDNPRTSSAGFDPEALE RGAKALREISSSPNAKKAFELMKKQEETRQAELAEKAAEFKAMQAQAETERQRVIYDE QKKLTQHQAQTKSQMARYEDELARKRMQAENEYQRARNQELVKQQEESAIRQEQARRA TEEQIQAQRRQTEREKAEIERETIRVRAMAEAEGRAHEAKLAEEVNRRILIDRANAER EKWVAAINTTFDHIGGGLRAILTDQNKLVVAVGGLTALAAGIYTTREGARVIWGYVDR ILGQPSLIRESSRGKYPWSGIFSRAMSSLSRSGDKISSSKNGIGFGDVVLHPSLQKRI QQLAGATANTKAHQAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGP QAVTKIHQLFDWAKKSKKGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQS KDIVLALATNRPGDLDSAVADRIDEVLEFPLPGEEERFKLLKLYLDKYIAQAGLRKSG VLQNLLKKQTQMIEIKGLTDDILREAAAKTEGFSGREIAKLMASVQAAVYGSENCVLD PSLFREVVDYKVAEHQQRRKLAAADGDRV" gene complement(32876671..32882848) /locus_tag="TCM_025459" /note="dbxref CacaoGD:Thecc1EG025459" mRNA complement(join(32876671..32877320,32877431..32877533, 32877646..32877713,32877793..32877938,32878033..32878231, 32881561..32882848)) /locus_tag="TCM_025459" /product="4-coumarate:CoA ligase 3" /inference="alignment:exonerate- protein:2:ricco:30073.m002251" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038994t1" /inference="similar to AA sequence:ricco:30073.m002251" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaL_g12232t00001" CDS complement(join(32877195..32877320,32877431..32877533, 32877646..32877713,32877793..32877938,32878033..32878231, 32881561..32882646)) /locus_tag="TCM_025459" /note="dbxref ricco:30073.m002251; paralog of Thecc1EG038994t1" /codon_start=1 /product="4-coumarate:CoA ligase 3" /protein_id="EOY10077.1" /db_xref="TAIR:AT1G65060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LU36" /translation="MITIADPVEPQKPELSPSLSPPATKPSSETTGDHIFRSKLPDIP ISNHLPLHTYCFENLSSFPDKPCLISGSSGKTYSFSETHLIAQKTAAGLSNLGIRKGD VIMILLQNCAEFVFSFMGASMIGAVSTTANPFYTSTEIFKQYKVAQAKLIVTQSQYVD KLKDTSNNENFPKMGEDFKVITIDDPPENCLHFTVLSEANENEIPQVSIDPDDPVALP FSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYLKHDDVVLCVLPLFHIYSLNSVL LCALRAGAAVLLMQKFEIGALLELIQKHKVSVAAVVPPLVLALAKNPMVAQYDLSSIR VVLSGAAPLGKELEEALRGRVPQAVLGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCG TVVRNAELKVIDPETGCSLGYNQPGEICIRGSQIMKGYLNDTSATATTIDVEGWLHTG DIGYVDDGDEIFIVDRVKEIIKFKGFQVPPAELESLLVSHPSIADAAVVPQKDEVAGE VPVAFVVRSNGFELTEEAVKEFIAKQVVFYKKLHKVHFVHAIPKSPSGKILRKDLRAK LAAATTTLP" mobile_element complement(32879252..32880385) /note="source:CACAO_Again_on_E108_scaffold_4 1 1122" /mobile_element_type="transposon:TIR/hAT" gene 32884858..32890159 /locus_tag="TCM_025460" /note="dbxref CacaoGD:Thecc1EG025460" mRNA join(32884858..32885456,32889541..32890159) /locus_tag="TCM_025460" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete" mobile_element 32886147..32886410 /note="source:CACAO_Helitron_S_E41_scaffold_5 1 264" /mobile_element_type="transposon:Helitron" CDS 32889691..32889915 /locus_tag="TCM_025460" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10078.1" /translation="MIMHEYLSSCLLFMLIRNLLFHLMAKTCFTSKVHYGGAPGKIAF GKKRKNATTASLFKKMQVRRNGVISLVLEN" mobile_element complement(32890679..32890925) /note="source:INTACT44_F119_scaffold_6-int 3622 3867" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(32891757..32893023) /locus_tag="TCM_025461" /note="dbxref CacaoGD:Thecc1EG025461" mRNA complement(32891757..32893023) /locus_tag="TCM_025461" /product="Fasciclin-like arabinogalactan family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s07610.1" /inference="similar to AA sequence:ricco:30073.m002254" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc3673t1" CDS complement(32892032..32892766) /locus_tag="TCM_025461" /note="dbxref ricco:30073.m002254" /codon_start=1 /product="Fasciclin-like arabinogalactan family protein, putative" /protein_id="EOY10079.1" /db_xref="TAIR:AT5G16920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S211" /translation="MATCIITFVLLMAPFQSTSATNIPPRNQDLGVAIEEMQKANYFT FVMLINMFPLDSKIHGNVTFLMPNDRMLSKTIIPESAVSSFLYRHSIPSPLLFENLQY IPTGSILPSSEPQYMLKISNGGGRRSFFLNNVRIISPNLCTASSSIRCHGIDGVLTAV KLPGSNTPLSTCSNSTGSAASPSPVAAPPSPAPILPFSDDSPVPAPQPAESSQNKSGA SQFLSDSKLLKFTGTLLVVSIIGVSM" gene complement(32892907..32899286) /locus_tag="TCM_025462" /note="dbxref CacaoGD:Thecc1EG025462" mRNA complement(join(32892907..32895240,32895437..32896244, 32896948..32897950,32898754..32899286)) /locus_tag="TCM_025462" /product="Cellulose synthase-like D3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s07900.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016602t1" /inference="similar to AA sequence:Phytozome:Glyma11g01230.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8202t1" CDS complement(join(32893483..32895240,32895437..32896244, 32896948..32897909)) /locus_tag="TCM_025462" /note="paralog of Thecc1EG016602t1" /codon_start=1 /product="Cellulose synthase-like D3" /protein_id="EOY10080.1" /db_xref="Phytozome:Glyma11g01230.1" /db_xref="TAIR:AT3G03050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LFL0" /translation="MASKSFKGSRSSLSISSDAAESHKPPIPPTVTFGRRTSSGRYVS YSRDDLDSELGSSDFMNYTVHIPPTPDNQPMDPSISQKVEEQYVSNSLFTGGFNSVTR AHLMDKVIESEANHPQMAGAKGSSCAIPGCDAKVMSDERGADILPCECDFKICRDCYI DAVKTGGGMCPGCKEPYKNTDLDETAVDNNARPLPLPPPGTMSKMERRLSLMKSTKSV LMRSQTGDFDHNRWLFETRGTYGYGNAIWPKDGNLGNGNNDEVVEPQELISKPWRPLT RKLKIPAAVLSPYRYSSHCWIVHNVIFLLYVFRLYYGNYTFEGLRLLIFLRVVVLALF LAWRINHPNNDAIWLWGMSVVCEIWFAFSWLLDQLPKLCPINRATDLNVLKDKFETPS PSNPTGKSDLPGIDVFVSTADPEKEPPLVTANTILSILAADYPVEKLACYVSDDGGAL LTFEAMAEAASFANIWVPFCRKHGIEPRNPESYFNLKRDPYKNKVKPDFVKDRRRVKR EYDEFKVRINSLPDSIRRRSDAYHAREEIKAMKLQRQNREDEPVESVKIPKATWMADG THWPGTWLNAASEHSRGDHAGIIQVMLKPPSDEPLHGTADDGPIDLTDVDIRLPLLVY VSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQAMREGMCFMMD RGGDRICYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLMGPVYVGTGCLFRRVA LYGFDPPRSKEHHPGCCSCCFFGRNNKHSSMAHTPEENHALRMGDSDDEEMNLSLLPK RFGNSTFLIDSIPIAEFQGRPLADHPAVKNGRPPGALTIPRELLDASTVAEAISVISC WYEDKTEWGHRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRL HQVLRWATGSVEIFFSRNNAFLASPRMKLLQRIAYLNVGIYPFTSIFLIVYCFLPALS LFSGQFIVQTLNVTFLTYLLTITVTLCLLAVLEIKWSGIELEEWWRNEQFWLIGGTSA HLAAVLQGLLKVIAGIEISFTLTSKSAGDDVDDEFADLYVVKWTSLMIPPITIMMINL IAIAVGFSRTIYSVIPQWSRLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSG LIAITISLLWVAINPPSGTNQIGGSFQFP" gene complement(32903876..32911414) /locus_tag="TCM_025463" /note="dbxref CacaoGD:Thecc1EG025463" mRNA complement(join(32903876..32904734,32905431..32905489, 32906552..32906817,32907734..32907922,32908029..32908109, 32909592..32909706,32909822..32909917,32910111..32910320, 32910995..32911148,32911279..32911319)) /locus_tag="TCM_025463" /product="3'-5'-exoribonuclease family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034501001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040771t1" /inference="similar to AA sequence:Phytozome:POPTR_0009s05220.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05341t00001" mRNA complement(join(32904421..32904734,32905431..32905489, 32906552..32906817,32907734..32907922,32908029..32908109, 32909592..32909649,32909822..32909917,32910111..32910320, 32910995..32911148,32911279..32911414)) /locus_tag="TCM_025463" /product="3'-5'-exoribonuclease family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034501001.2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01034502001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040771t1" /inference="similar to AA sequence:Phytozome:POPTR_0009s05220.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1401t4; inference alignment:Newbler:10:TSA:cgbaP2_g05341t00001" CDS complement(join(32904526..32904734,32905431..32905489, 32906552..32906817,32907734..32907922,32908029..32908109, 32909592..32909649,32909822..32909917,32910111..32910320, 32910995..32911131)) /locus_tag="TCM_025463" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG040771t1" /codon_start=1 /product="3'-5'-exoribonuclease family protein isoform 2" /protein_id="EOY10082.1" /db_xref="Phytozome:POPTR_0009s05220.1" /db_xref="TAIR:AT3G60500.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M209" /translation="MDTKLANTWRLTVNEKNFIKTALLSEVRIDGRKPFEFRNIIINF GSEDGLAEVQLGQTRVMGVVTAKLVQPYQDRPNEGTLTIYTEFSPMADPSFETGRPGE SAVELGRIVDRGLRESRAVDTESLCIVAGKLVWGIRIDLHILDNGGPECSLGGEDGQE VIIHPPEMIEPLPLIVHHLPIAITFGFFIDESIVVIDPTHNEEAVMAGRMIATVNANG DICAIQKAGGEGVSQSVIMQCLQLAITMAAAITKQIKEAVEAYNSKRALQKIKREPSC VGTNIKESQNQSLDNKGVELAGQYMERLKLVSRESCIGQSNDDEADSKLSALRSGTDA NGINFIGGPFSWDPYSKGVDPEFLKASLASKGLSTPNKKKGSSSDEKPGEAEREEPYK DVNPKLSAVDASETEMQTKGQKTLKDAVKPKNKRKKKGSSMI" CDS complement(join(32904526..32904734,32905431..32905489, 32906552..32906817,32907734..32907922,32908029..32908109, 32909592..32909706,32909822..32909917,32910111..32910320, 32910995..32911131)) /locus_tag="TCM_025463" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG040771t1" /codon_start=1 /product="3'-5'-exoribonuclease family protein isoform 1" /protein_id="EOY10081.1" /db_xref="Phytozome:POPTR_0009s05220.1" /db_xref="TAIR:AT3G60500.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M209" /translation="MDTKLANTWRLTVNEKNFIKTALLSEVRIDGRKPFEFRNIIINF GSEDGLAEVQLGQTRVMGVVTAKLVQPYQDRPNEGTLTIYTEFSPMADPSFETGRPGE SAVELGRIVDRGLRESRAVDTESLCIVAGKLVWGIRIDLHILDNGGNLVDAANIAALA ALMTFRRPECSLGGEDGQEVIIHPPEMIEPLPLIVHHLPIAITFGFFIDESIVVIDPT HNEEAVMAGRMIATVNANGDICAIQKAGGEGVSQSVIMQCLQLAITMAAAITKQIKEA VEAYNSKRALQKIKREPSCVGTNIKESQNQSLDNKGVELAGQYMERLKLVSRESCIGQ SNDDEADSKLSALRSGTDANGINFIGGPFSWDPYSKGVDPEFLKASLASKGLSTPNKK KGSSSDEKPGEAEREEPYKDVNPKLSAVDASETEMQTKGQKTLKDAVKPKNKRKKKGS SMI" gene complement(32915513..32924699) /locus_tag="TCM_025465" /note="dbxref CacaoGD:Thecc1EG025465" mRNA complement(join(32915513..32915687,32916064..32916568, 32918414..32918543,32920415..32920564,32921517..32921581, 32922631..32922715,32923949..32924095,32924468..32924699)) /locus_tag="TCM_025465" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.16 coverage" CDS complement(join(32916490..32916568,32918414..32918543, 32920415..32920564,32921517..32921571)) /locus_tag="TCM_025465" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10083.1" /translation="MAGKLVNIKLHIYLEITAYAEMKIAIDPYCLDACSDYYGNIECD EDCQAQGYNYGTCLDKQGADNIELYGEVVRNYFCFRACSGEPQFGDDECDGVCKARGY SSGSCLRLRECLVLLNSANSYVFKATTLHLPKICA" mobile_element complement(32917396..32917729) /note="source:CACAO_on_SS_E42_scaffold_2 24149 24522" /mobile_element_type="transposon:TIR/Mutator" mobile_element 32917792..32917937 /note="source:CACAO_Again_on_S_E195_scaffold_6 892 1023" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(32921346..32921415) /note="source:CACAO_M_E14113_F106_scaffold_3 13805 13874" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 32921348..32921427 /note="source:CACAO_M_S_E52027_F3_scaffold_5 3883 3963" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32923346..32923504) /note="source:CACAO_hAT_E1553_scaffold_4 5 163" /mobile_element_type="transposon:TIR/hAT" gene complement(32925375..32931905) /locus_tag="TCM_025466" /note="dbxref CacaoGD:Thecc1EG025466" mRNA complement(join(32925375..32925657,32926459..32926597, 32927283..32927351,32927796..32927906,32928883..32929021, 32929102..32929217,32929901..32930048,32930138..32930295, 32930874..32931047,32931289..32931905)) /locus_tag="TCM_025466" /product="Exostosin family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s07630.1" /inference="similar to AA sequence:ricco:30073.m002257" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc712t5; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc712t5" mRNA complement(join(32925375..32925657,32926459..32926598, 32928883..32929021,32929102..32929217,32929901..32930048, 32930138..32930296,32930358..32930377,32930874..32931047, 32931289..32931905)) /locus_tag="TCM_025466" /product="Exostosin family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s07630.1" /inference="similar to AA sequence:ricco:30073.m002257" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc641t8; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc641t8; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc712t5" CDS complement(join(32926472..32926597,32927283..32927351, 32927796..32927906,32928883..32929021,32929102..32929217, 32929901..32930048,32930138..32930295,32930874..32931047, 32931289..32931771)) /locus_tag="TCM_025466" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30073.m002257" /codon_start=1 /product="Exostosin family protein isoform 1" /protein_id="EOY10084.1" /db_xref="TAIR:AT5G16890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LFL2" /translation="MRAKQIQSSWTRSKSQILLLFSTVCLLALSFFLFLSSPSDLTRS STHSFAHPPIRPETSFVASLEYFLTHKAPSHQRRASDDTVRTVLEDDVRKLDERKFAK EMEWVHGDPYYPMNMPVRVYVYEMPAKFTYDLLWLFWNTYRETSNLTSNGSPVHRLIE QHSIDYWLWADLIAPASERLLKNVVRVDRQEDADLFYVPFFTTISFFLLEKQQCKALY REAVKWVTDQPAWKQSEGRDHIFPIHHPWSFKSVRRVVKNAIWLLPDMDSTGNWYKPG QVSLEKDLILPYVPNVDLCDTKCLSESESKRTTLLFFRGRLKRNAGGKIRAKLVAELT DAKDVVIEEGTAGVGGKAAAQKGMRRSIFCLSPAGDTPSSARLFDAIVSGCIPVIISD ELELPFEGILDYRKIAIFVSSTDAVQSGWLLRYLKGISPTQIREMRRNLAEYSRHFVY SSPAQPLGPEDLVWRMMAGKLVNIKLHTRRSQRVVKESRSVCTCDCRRASTIFTPSS" CDS complement(join(32926587..32926598,32928883..32929021, 32929102..32929217,32929901..32930048,32930138..32930296, 32930358..32930377,32930874..32931047,32931289..32931771)) /locus_tag="TCM_025466" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30073.m002257" /codon_start=1 /product="Exostosin family protein isoform 3" /protein_id="EOY10086.1" /db_xref="TAIR:AT5G16890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LFL2" /translation="MRAKQIQSSWTRSKSQILLLFSTVCLLALSFFLFLSSPSDLTRS STHSFAHPPIRPETSFVASLEYFLTHKAPSHQRRASDDTVRTVLEDDVRKLDERKFAK EMEWVHGDPYYPMNMPVRVYVYEMPAKFTYDLLWLFWNTYRETSNLTSNGSPVHRLIE QHSIDYWLWADLIAPASERLLKNVVRVDRQEDADLFYVPFFTTISFFLLEKQQCKALY RFCNILYGEAVKWVTDQPAWKQSEGRDHIFPIHHPWSFKSVRRVVKNAIWLLPDMDST GNWYKPGQVSLEKDLILPYVPNVDLCDTKCLSESESKRTTLLFFRGRLKRNAGGKIRA KLVAELTDAKDVVIEEGTAGVGGKAAAQKGMRRSIFCLSPAGDTPSSARLFDAIVSGC IPVIISDELELPFEGILDYRKDGW" mRNA complement(join(32927283..32927351,32927796..32927906, 32928883..32929217,32929901..32930048,32930138..32930295, 32930874..32931047,32931289..32931905)) /locus_tag="TCM_025466" /product="Exostosin family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s07630.1" /inference="similar to AA sequence:TAIR:AT5G16890.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc723t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc641t8; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc712t5" CDS complement(join(32929098..32929217,32929901..32930048, 32930138..32930295,32930874..32931047,32931289..32931771)) /locus_tag="TCM_025466" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Exostosin family protein isoform 2" /protein_id="EOY10085.1" /db_xref="TAIR:AT5G16890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LFL2" /translation="MRAKQIQSSWTRSKSQILLLFSTVCLLALSFFLFLSSPSDLTRS STHSFAHPPIRPETSFVASLEYFLTHKAPSHQRRASDDTVRTVLEDDVRKLDERKFAK EMEWVHGDPYYPMNMPVRVYVYEMPAKFTYDLLWLFWNTYRETSNLTSNGSPVHRLIE QHSIDYWLWADLIAPASERLLKNVVRVDRQEDADLFYVPFFTTISFFLLEKQQCKALY REAVKWVTDQPAWKQSEGRDHIFPIHHPWSFKSVRRVVKNAIWLLPDMDSTGNWYKPG QVSLEKDLILPYVPNVDLCDTKCLSESESKRTTLLFFRGRLKRNAGGKIRAKLVAELT DAKDVVIEEGTAGVGGKAAAQKGMRR" mobile_element 32932457..32934684 /note="source:INTACT512_F236_scaffold_5-int 1639 3846" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 32934685..32936651 /note="source:scaffold_5_CACTA_0586 12584 14569" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(32935280..32938115) /note="source:CACAO_M_E42343_F106_scaffold_5 10613 13450" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(32938435..32938528) /note="source:CACAO_M_S_E16386_F9_scaffold_2 2050 2142" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32939681..32940022) /note="source:INTACT687_F13_scaffold_3-int 1648 2053" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32943750..32943805) /note="source:scaffold_1_CACTA_0008 1068 1350" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(32943806..32944202) /note="source:INTACT687_F13_scaffold_3-int 1298 1657" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32944203..32944230) /note="source:scaffold_1_CACTA_0008 914 1067" /mobile_element_type="transposon:TIR/CACTA" gene complement(32945539..32948730) /locus_tag="TCM_025469" /note="dbxref CacaoGD:Thecc1EG025469" mRNA complement(join(32945539..32946063,32946146..32946487, 32948574..32948730)) /locus_tag="TCM_025469" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete" CDS complement(join(32945644..32946063,32946146..32946475)) /locus_tag="TCM_025469" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10087.1" /translation="MVKLEEDKRNKAKMEELKKGIEDMAQGKEVVGNEIRRPNCQTGT RMITIKTNVAEEDMSWVQSSAVGRLRERVDYRTVQSGLAREGIVVQIRIPEGMTVLVT LDLKEEIEVRLWVRLGEVLIHSWHMNTFKAIVGCWGEFLAIDRNTCRSERFDQANILV KVRSRAIIPSQVRIEVEGRQYSICVSMVEWEASCDLKAYTKGKEIIENDEEIHREIGS DDGGGGEEKVTTVERKQEAKCCKLIYQDNLL" mobile_element complement(32947373..32947867) /note="source:INTACT135F_F90_scaffold_2-int 13527 14003" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(32947380..32947952) /note="source:CACAO_M_E4753_F17_scaffold_2 7215 7818" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32947868..32948608) /note="source:scaffold_2_CACTA_0244 13496 14704" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(32948825..32948993) /note="source:scaffold_1_CACTA_0008 7193 7370" /mobile_element_type="transposon:TIR/CACTA" gene complement(32948955..32953407) /locus_tag="TCM_025471" /note="dbxref CacaoGD:Thecc1EG025471" mRNA complement(join(32948955..32949842,32951020..32951283, 32951784..32952313,32953262..32953308)) /locus_tag="TCM_025471" /product="Target of Myb protein 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30073.m002258" /inference="similar to AA sequence:ricco:30073.m002258" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaL_g09964t00001" mRNA complement(join(32949034..32949842,32951020..32951283, 32951784..32952313,32953262..32953407)) /locus_tag="TCM_025471" /product="Target of Myb protein 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30073.m002258" /inference="similar to AA sequence:ricco:30073.m002258" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8209t1; alternateUTRof:Thecc1EG025471t1; inference alignment:Newbler:10:TSA:cgbaL_g09964t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc339t6" CDS complement(join(32949420..32949842,32951020..32951283, 32951784..32952302)) /locus_tag="TCM_025471" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30073.m002258" /codon_start=1 /product="Target of Myb protein 1 isoform 1" /protein_id="EOY10088.1" /db_xref="TAIR:AT5G16880.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPJ6" /translation="MDKNLMDKVSAFGERLKIEGAEVGRKVSAGMSSMSFKVKELFQG PNQADKLVEDATSETLDEPDWALNLEICDMINHEKISSVELIRGIKRRIMMKSPRAQY LSLVLLETCVKNCEKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALTLIEAWGESTS ELRYLPVYEETYKSLKSRGIRFPGRDNESLAPIFTPPRSVSAQEVDASLAQQFQHDMQ LQRDIPVQTFTAEQTKEAFDVARNSIELLSTVLSSSPQQDALEDDLTTTLVQQCRQSQ STVLRIIETAGDNEAMLFEALNVNDEIQKALSKYEELKKPSLVAHEPEPAMIPVAVEP DDSPHHAKEDALIRKPAGTRHGTHGGSNDDMMDDLDEMIFGKKGGGSSESGQDSKKQQ APKDDLITF" CDS complement(join(32949420..32949842,32951020..32951283, 32951784..32952302)) /locus_tag="TCM_025471" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30073.m002258" /codon_start=1 /product="Target of Myb protein 1 isoform 1" /protein_id="EOY10089.1" /db_xref="TAIR:AT5G16880.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPJ6" /translation="MDKNLMDKVSAFGERLKIEGAEVGRKVSAGMSSMSFKVKELFQG PNQADKLVEDATSETLDEPDWALNLEICDMINHEKISSVELIRGIKRRIMMKSPRAQY LSLVLLETCVKNCEKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALTLIEAWGESTS ELRYLPVYEETYKSLKSRGIRFPGRDNESLAPIFTPPRSVSAQEVDASLAQQFQHDMQ LQRDIPVQTFTAEQTKEAFDVARNSIELLSTVLSSSPQQDALEDDLTTTLVQQCRQSQ STVLRIIETAGDNEAMLFEALNVNDEIQKALSKYEELKKPSLVAHEPEPAMIPVAVEP DDSPHHAKEDALIRKPAGTRHGTHGGSNDDMMDDLDEMIFGKKGGGSSESGQDSKKQQ APKDDLITF" mobile_element 32953765..32953981 /note="source:scaffold_1_CACTA_0008 14041 14245" /mobile_element_type="transposon:TIR/CACTA" mobile_element 32953996..32954250 /note="source:scaffold_7_CACTA_0789 1861 2068" /mobile_element_type="transposon:TIR/CACTA" gene 32956094..32961048 /locus_tag="TCM_025472" /note="dbxref CacaoGD:Thecc1EG025472" mRNA join(32956094..32956115,32957138..32957420, 32957526..32957584,32958500..32958559,32958706..32958775, 32959516..32959585,32960429..32960455,32960545..32961048) /locus_tag="TCM_025472" /product="Peptidyl-tRNA hydrolase II family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400015427" /inference="similar to AA sequence:Phytozome:POPTR_0019s07680.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1154t5" mRNA join(32957175..32957420,32957526..32957584, 32958500..32958559,32958706..32958775,32959516..32959585, 32960436..32960455,32960545..32961038) /locus_tag="TCM_025472" /product="Peptidyl-tRNA hydrolase II family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400015427" /inference="similar to AA sequence:Phytozome:POPTR_0019s07680.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1143t1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1154t5" CDS join(32957214..32957420,32957526..32957584, 32958500..32958559,32958706..32958775,32959516..32959585, 32960429..32960455,32960545..32960594) /locus_tag="TCM_025472" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Peptidyl-tRNA hydrolase II family protein isoform 1" /protein_id="EOY10090.1" /db_xref="Phytozome:POPTR_0019s07680.1" /db_xref="TAIR:AT5G16870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M8U2" /translation="MMDFSWLSTILVGAGCLALGYCIGKRHPACLFFSSRGAKDTTIS KANKKKNKEPFEIEKLADILEDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKLLHR APKALDRWEMCAQPKVVVKIDSEEDMLVLQERAKSLNLPTHITIDAGRTQIAPNSRTV MAILGPIEMVDDVTGGLKLL" CDS join(32957214..32957420,32957526..32957584, 32958500..32958559,32958706..32958775,32959516..32959585, 32960436..32960443) /locus_tag="TCM_025472" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Peptidyl-tRNA hydrolase II family protein isoform 2" /protein_id="EOY10091.1" /db_xref="Phytozome:POPTR_0019s07680.1" /db_xref="TAIR:AT5G16870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M8U2" /translation="MMDFSWLSTILVGAGCLALGYCIGKRHPACLFFSSRGAKDTTIS KANKKKNKEPFEIEKLADILEDFKMVLVVRNDLKMGKGKIAAQCSHATLGLYKKLLHR APKALDRWEMCAQPKVVVKIDSEEDMLVLQERAKSLNLPTHITIDAGRTQIAPRQ" mobile_element 32958063..32958146 /note="source:scaffold_1_CACTA_0016 1100 1174" /mobile_element_type="transposon:TIR/CACTA" gene complement(32961113..32962177) /locus_tag="TCM_025473" /note="dbxref CacaoGD:Thecc1EG025473" mRNA complement(32961113..32962177) /locus_tag="TCM_025473" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.80 coverage" CDS complement(32961303..32962022) /locus_tag="TCM_025473" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10092.1" /translation="MLSPGYVFDPTDREIVSYYLPRLIAGRGNTAFLGNLSYFFNVRD VYSRKPSLLFETSNNGERKPLPFMKGNQRFFFSSRRQRVAETNSDWKSYRRTVQEEGQ GEPQGCWKRNSVTQPIFDDQNEEKKILGCVNLLGFFEYRIGENNKKEDIKSNWIMYEY YLLADRFQDWVICKIKDKNRSEEDEFDARLLHRLFSPKETVVADGSQTETQPVPSQSS NLVQARRDFDLNELPRDSPSP" gene 32963113..32966582 /locus_tag="TCM_025474" /note="dbxref CacaoGD:Thecc1EG025474" mRNA join(32963113..32963229,32963806..32964096, 32964205..32964361,32964469..32964685,32964804..32964857, 32964960..32965039,32965134..32965411,32965493..32965888, 32965957..32966150,32966241..32966359,32966479..32966582) /locus_tag="TCM_025474" /product="Transcription factor, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016586t2" /inference="similar to AA sequence:ricco:30073.m002269" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.38 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc707t5" CDS join(32963838..32964096,32964205..32964361, 32964469..32964685,32964804..32964857,32964960..32965039, 32965134..32965411,32965493..32965888,32965957..32966150, 32966241..32966359,32966479..32966500) /locus_tag="TCM_025474" /note="dbxref ricco:30073.m002269; paralog of Thecc1EG016586t2" /codon_start=1 /product="Transcription factor, putative" /protein_id="EOY10093.1" /db_xref="TAIR:AT5G46910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S226" /translation="MAPPKKKKNSQIKATSSGTKKRSKTGSTSVSIDFYLSVRMREKY NLNEELEWVDDIPECPVYRPSMEEFQDPLAYLQTIAQEASKYGICKIVSPWKASVPAA HVLTKEIKGFKFKSYIQPLRLHEWNRNDKASFDMSQTNHNFRSFEKLANKEFAKRFPH STNLSPVDMEKEYWHEMGRGNNKVEYAVNIDGSAFSSDPNDQLGQSKGNLKTLPKLPN STLRLLSYSIPGVTEPMLYIGMIFSTFAWHVEDHYLYSINYHHSGAPKSWYSVPGTSA PEFHKVVMDCVYAPEVLLGGGEDGASALLAEKTTMFPPNILRENGVPVYKAVQMAGDY VITFPRAHHAGFSQGFSIGEAVNFADGGWFPWGTMAGEEYARLSKQVILSNEELLCKE AISLFNSSNDESSDHPPTELACQSSTKMYFIKHIENLYNNLRHLCNLEAAFSYSENDL QSIICPHCTRGCYLTFFECDSCPNYGCLFHEFNSRNCTRPSCLGRMVINLRQDIWEVV AAYEKLRKGSSEQDVQQVDQLPNLSSCIKEGLARSDKVDSRGMKPKRADFETIVPFPK DCKKPRTKGRLQRTDPELRWGSSIK" gene complement(32966449..32970681) /locus_tag="TCM_025475" /note="dbxref CacaoGD:Thecc1EG025475" mRNA complement(join(32966449..32967020,32967190..32967369, 32967552..32967668,32967757..32967918,32968232..32968393, 32968486..32968638,32969646..32970221,32970530..32970681)) /locus_tag="TCM_025475" /product="Zinc knuckle family protein, putative" /inference="alignment:exonerate- protein:2:ricco:29755.m000430" /inference="similar to AA sequence:Phytozome:POPTR_0004s20450.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05911t00001" CDS complement(join(32966616..32967020,32967190..32967369, 32967552..32967668,32967757..32967918,32968232..32968393, 32968486..32968638,32969646..32970008)) /locus_tag="TCM_025475" /codon_start=1 /product="Zinc knuckle family protein, putative" /protein_id="EOY10094.1" /db_xref="Phytozome:POPTR_0004s20450.1" /db_xref="TAIR:AT3G43590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MYP8" /translation="MAKRDKGKSAKFEMEENESGPLGSKQVLEISSSDDEEANEDLSL KIVEKALLVKAAKLNERNDAVSGDRDVLSVVDLTSSSSEEGEADVAGTSGVAEEADFD LKVNKTVTIKKKKKTKSEKVIITEDGDKAEMIEKAETVEEAEMAKAAETIESVDPNTV DISDNIVLRKLLRGPRYFDPPDSSWQTCFNCGEEGHMAVNCTSASKRKKPCFVCGSLD HGARQCSKAQDCFICKKSGHRAKDCPDKHKSGSKNGKICLRCGDSGHDMFSCWKDYSH GDLKEIQCYICKNFGHLCCVNFVDTSASEVSCYRCGQLGHTGLSCGKSRGDTKETTDN ASPSICYKCGEGGHFARECPNGTVSSSSCYKCGEGGHFARECTAKAGRRNHISSTPNV RPRKENKELLGYNSAPHDQGKRPKRKKLQYEEKGFSVPRKVKQRGGWVAEDPGDFSHR KSKRNHWNSPSTPSNEGHKKSSLTSGSRMSGSQSSKQKNSHRFSASRFGNFDDDEPRR MYNWR" gene 32968650..32969096 /locus_tag="TCM_025476" /note="dbxref CacaoGD:Thecc1EG025476" mRNA 32968650..32969096 /locus_tag="TCM_025476" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc4029t1" CDS 32968805..32969011 /locus_tag="TCM_025476" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10095.1" /translation="MLSQAQNRQFIDYSTTKNGALPAQMNNITVTKAMFDSKYSLIQT IFKRQANFANLNPFKHSTVALLEL" gene complement(32970934..32971540) /locus_tag="TCM_025477" /note="dbxref CacaoGD:Thecc1EG025477" mRNA complement(join(32970934..32971004,32971105..32971172, 32971264..32971540)) /locus_tag="TCM_025477" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025478t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc717t1" CDS complement(join(32970984..32971004,32971105..32971172, 32971264..32971405)) /locus_tag="TCM_025477" /note="paralog of Thecc1EG025478t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10096.1" /translation="MRGVIDRLNEDGGPDLGLVMAYPPEELALRDSGFFVPNSDTPWI EWAGRRFHIGNINGANVIYVMTGKQTTRQMHL" gene complement(32971908..32974508) /locus_tag="TCM_025478" /note="dbxref CacaoGD:Thecc1EG025478" mRNA complement(join(32971908..32972317,32972405..32972584, 32972675..32972866,32973006..32973161,32973251..32973318, 32973865..32974508)) /locus_tag="TCM_025478" /product="Phosphorylase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024384001" /inference="similar to AA sequence:ricco:30073.m002259" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03385t00001" CDS complement(join(32972141..32972317,32972405..32972584, 32972675..32972866,32973006..32973161,32973251..32973318, 32973865..32974252)) /locus_tag="TCM_025478" /note="dbxref ricco:30073.m002259" /codon_start=1 /product="Phosphorylase superfamily protein" /protein_id="EOY10097.1" /db_xref="TAIR:AT4G24350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S216" /translation="MLQKLALPLHHFTEQLSFSSPTLSRKIYVNQLRTIDRSYGGWVA LMGCQRPIWGVDLEVLLVLGMVLLALVQKSMQLSRSHPMRGVVDKVNDGGGPYVGLVM AYPTEEMALQDSGFFLPNSDIPSIQLAGRRFNIGSINGVDVIYVMTGEQTANAALTVQ ALLDAFDIQGIVHYGTAGSTNDSLSFGDVSVMNYVAFTSSWKWKEFKSEKGQLPTLTF GAFNFPEKGENLLAKIEFTPVQLYSTGKPMEEMYWLPVDPNWFTIAAQLQNLTLQQCV NDTYCLPETPKVVYGLKGSTADIFLDNAAYRKYLFQQFNVSTVDEESAAIVLTCLTNG VPCIVFRGVSDLAGGNGTLSLASLSSLASINALTVAVEFISLITRESSVVDQ" gene complement(32974672..32978331) /locus_tag="TCM_025479" /note="dbxref CacaoGD:Thecc1EG025479" mRNA complement(join(32974672..32975680,32975766..32975846, 32976887..32976962,32977187..32977290,32978154..32978331)) /locus_tag="TCM_025479" /product="RNA-binding family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024381001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016568t1" /inference="similar to AA sequence:Phytozome:GSVIVT01024381001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09574t00001" mRNA complement(join(32974672..32975680,32975766..32975846, 32976887..32976962,32977187..32977290,32977980..32978065)) /locus_tag="TCM_025479" /product="RNA-binding family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024381001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016568t1" /inference="similar to AA sequence:Phytozome:GSVIVT01024381001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:PASA:2:TSA:puevd3b024632t1a3; inference alignment:Newbler:10:TSA:cgbaB_g09574t00001" CDS complement(join(32975117..32975680,32975766..32975846, 32976887..32976962,32977187..32977290,32978154..32978315)) /locus_tag="TCM_025479" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG016568t1" /codon_start=1 /product="RNA-binding family protein isoform 1" /protein_id="EOY10098.1" /db_xref="Phytozome:GSVIVT01024381001" /db_xref="TAIR:AT4G17720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5VRZ6" /translation="MFIAHPVTSFTPQLLSLWKKVAFPLNFVKEKGIFFFFSGEERFD LFCHKRNFMAVRSVKVSNVSLGASEQDMKEFFSFSGEIEHVEMQSGNERSQIAYVTFK DSQGAETAVLLSGATIVDQSVIIDLAPDYKPPATASAPPATMNKSAGQAESAVQKAED VVSSMLARGFILGKDAVTKAKAFDEKHQFTSTATAKVASLDQKIGLTEKISAGTTMVN DKVREMDQKFQVSEKTKSAFAAAEQTVSSAGSAIMKNRYVLTGASWVTGAFNRVAKAA GDVGQKTKEKVMAEEEQAHKSEGYAQINESEPPKAATSEQPSKPSSAQGLIL" CDS complement(join(32975117..32975680,32975766..32975846, 32976887..32976962,32977187..32977239)) /locus_tag="TCM_025479" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG016568t1" /codon_start=1 /product="RNA-binding family protein isoform 2" /protein_id="EOY10099.1" /db_xref="Phytozome:GSVIVT01024381001" /db_xref="TAIR:AT4G17720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5VRZ6" /translation="MKEFFSFSGEIEHVEMQSGNERSQIAYVTFKDSQGAETAVLLSG ATIVDQSVIIDLAPDYKPPATASAPPATMNKSAGQAESAVQKAEDVVSSMLARGFILG KDAVTKAKAFDEKHQFTSTATAKVASLDQKIGLTEKISAGTTMVNDKVREMDQKFQVS EKTKSAFAAAEQTVSSAGSAIMKNRYVLTGASWVTGAFNRVAKAAGDVGQKTKEKVMA EEEQAHKSEGYAQINESEPPKAATSEQPSKPSSAQGLIL" mobile_element 32978991..32979037 /note="source:CACAO_M_E12862_F143_scaffold_3 1669 1714" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(32979384..32979542) /note="source:CACAO_PIF_E54_scaffold_3 8982 9134" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 32979511..32979579 /note="source:scaffold_6_CACTA_0699 4291 4356" /mobile_element_type="transposon:TIR/CACTA" gene 32980573..32987655 /locus_tag="TCM_025480" /note="dbxref CacaoGD:Thecc1EG025480" mRNA join(32980573..32980976,32981068..32981159, 32981582..32981669,32982262..32982413,32982597..32982743, 32982852..32982988,32983613..32983700,32984050..32984229, 32984682..32984981,32985140..32985279,32985364..32985505, 32986422..32986696,32986974..32987034,32987126..32987655) /locus_tag="TCM_025480" /product="Sas10/U3 ribonucleoprotein family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038137001" /inference="similar to AA sequence:Phytozome:GSVIVT01038137001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:PASA:2:TSA:puevd3b024633t1a2; inference alignment:Newbler:10:TSA:cgbaB_g04520t00001" mRNA join(32980573..32980976,32981068..32981159, 32981582..32981669,32982262..32982413,32982597..32982743, 32982852..32982988,32983613..32983700,32984050..32984229, 32984682..32984822,32984904..32984981,32985140..32985279, 32985364..32985505,32986422..32986696,32986974..32987034, 32987126..32987194,32987302..32987655) /locus_tag="TCM_025480" /product="Sas10/U3 ribonucleoprotein family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01038137001" /inference="similar to AA sequence:Phytozome:GSVIVT01038137001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04520t00001" CDS join(32980868..32980976,32981068..32981159, 32981582..32981669,32982262..32982413,32982597..32982743, 32982852..32982988,32983613..32983700,32984050..32984229, 32984682..32984822,32984904..32984981,32985140..32985279, 32985364..32985505,32986422..32986696,32986974..32987034, 32987126..32987194,32987302..32987433) /locus_tag="TCM_025480" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Sas10/U3 ribonucleoprotein family protein, putative isoform 1" /protein_id="EOY10100.1" /db_xref="Phytozome:GSVIVT01038137001" /db_xref="TAIR:AT2G43650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6L3T5" /translation="MGKRGKSSKKDSRNPKRRHRDDDVVDPEDVNDEIDIFHKQRDVV PLDINGDAGDSDEDDEHPVFDLQDIDDDEEEEEEEEDDDDIDDAQVSKFAAKIARQHK LLRAKFGGVEDEMNDEDDDEDEKEEKAPWGGIKSRYYGGDNRDFELHSSDDEAPMEEE DEVKEIQKERAKNLSIEDFGLEDASEDENNRELTLEEISAKGKGGKLSLLSEEALDVL ATFEEVKKDLNALSKEEQMDVVHSSAPELVGLLSELDAALEELESKVNPLLRKAKKGK IFLEGGMRYLEVKQILLLAYCQAITFYLLLKSEGHPVRDHPVLGRIMEIRGLLDKVKQ LDANLPSEWEEILKNKGAEMGQQLVKESAELVSDSGTKDHGPSLPEDTTNLPKVESAS SHDKKAVKLKHENDQVGMQSREMLKVRAALEEKLKQKGIFSSNIQKPDKTKKHLKPVN GQLETYDDFADDAMDVEGGARGSSNGLASSQHSNKISQLLTAKQNKSKVVSGDDDLPR RDDIGERRRKYELRVLAGAAVKSEDDHGGEYDTSEDDRGISVEENGDTEDTKDTEDSE DDFYKQVKKQRAAKLAAKAELYTRTSVQPSLPETVDGKRLITHQIEKNRGLTRQRNKN TKNPRKKYRLQSKKREKKRKGQVRDIRKPVGQYGGEASGINVGISRSIRFKN" CDS join(32980868..32980976,32981068..32981159, 32981582..32981669,32982262..32982413,32982597..32982743, 32982852..32982988,32983613..32983700,32984050..32984229, 32984682..32984981,32985140..32985279,32985364..32985505, 32986422..32986696,32986974..32987034,32987126..32987260) /locus_tag="TCM_025480" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Sas10/U3 ribonucleoprotein family protein, putative isoform 2" /protein_id="EOY10101.1" /db_xref="Phytozome:GSVIVT01038137001" /db_xref="TAIR:AT2G43650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6L3T5" /translation="MGKRGKSSKKDSRNPKRRHRDDDVVDPEDVNDEIDIFHKQRDVV PLDINGDAGDSDEDDEHPVFDLQDIDDDEEEEEEEEDDDDIDDAQVSKFAAKIARQHK LLRAKFGGVEDEMNDEDDDEDEKEEKAPWGGIKSRYYGGDNRDFELHSSDDEAPMEEE DEVKEIQKERAKNLSIEDFGLEDASEDENNRELTLEEISAKGKGGKLSLLSEEALDVL ATFEEVKKDLNALSKEEQMDVVHSSAPELVGLLSELDAALEELESKVNPLLRKAKKGK IFLEGGMRYLEVKQILLLAYCQAITFYLLLKSEGHPVRDHPVLGRIMEIRGLLDKVKQ LDANLPSEWEEILKNKGAEMGQQLVKESAELVSDSGTKDHGPSLVGLFLSVNNVFLGC IFACLLISHFVHQPEDTTNLPKVESASSHDKKAVKLKHENDQVGMQSREMLKVRAALE EKLKQKGIFSSNIQKPDKTKKHLKPVNGQLETYDDFADDAMDVEGGARGSSNGLASSQ HSNKISQLLTAKQNKSKVVSGDDDLPRRDDIGERRRKYELRVLAGAAVKSEDDHGGEY DTSEDDRGISVEENGDTEDTKDTEDSEDDFYKQVKKQRAAKLAAKAELYTRTSVQPSL PETVDGKRLITHQIEKNRGLTRQRNKNTKNPRKKYRVFWQKILIPCIWYSIASLFEL" gene 32988064..32993036 /locus_tag="TCM_025481" /note="dbxref CacaoGD:Thecc1EG025481" mRNA join(32988064..32988546,32989417..32989510, 32989898..32990037,32990642..32990713,32991522..32991893, 32992651..32993036) /locus_tag="TCM_025481" /product="Syntaxin of plants 21 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30073.m002272" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016567t1" /inference="similar to AA sequence:Phytozome:GSVIVT01013100001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:PASA:2:TSA:puevd3b024634t1a2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14465t1" mRNA join(32988064..32988546,32989417..32989510, 32989898..32990037,32990642..32990713,32991522..32991679, 32991793..32991893,32992651..32992932) /locus_tag="TCM_025481" /product="Syntaxin of plants 21 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30073.m002272" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016567t1" /inference="similar to AA sequence:Phytozome:Glyma09g33950.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14465t1" CDS join(32988335..32988546,32989417..32989510, 32989898..32990037,32990642..32990713,32991522..32991679, 32991793..32991893,32992651..32992716) /locus_tag="TCM_025481" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG016567t1" /codon_start=1 /product="Syntaxin of plants 21 isoform 1" /protein_id="EOY10102.1" /db_xref="Phytozome:Glyma09g33950.1" /db_xref="TAIR:AT5G16830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q39233" /translation="MSFQDLEAGYVGPQQDNYLNSSQQKLRQEKGEPSQSVVAGIFKI RTALLGFDRLVNSLGTPKDTSELRDKLHKTRLHIGQLVKETSAKLREASEADQNAEVS PLKKIADAKLAKDFQSALKDLQKAQRLAAEKETAYAPLDSKEVVPLSYAAHEVEVNSP KRLEQQTLLVSKRQEVVLLDNEITFNEAIIEERDQGIKEVQQQISEVNEIFKDLSVLV REQGAMIDDIGSNIENSHSATVLATSHLKRASKIQRANSSTRCLLVLIFGIILLIFII VVVA" CDS join(32988335..32988546,32989417..32989510, 32989898..32990037,32990642..32990713,32991522..32991792) /locus_tag="TCM_025481" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG016567t1" /codon_start=1 /product="Syntaxin of plants 21 isoform 2" /protein_id="EOY10103.1" /db_xref="Phytozome:GSVIVT01013100001" /db_xref="TAIR:AT5G16830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q39233" /translation="MSFQDLEAGYVGPQQDNYLNSSQQKLRQEKGEPSQSVVAGIFKI RTALLGFDRLVNSLGTPKDTSELRDKLHKTRLHIGQLVKETSAKLREASEADQNAEVS PLKKIADAKLAKDFQSALKDLQKAQRLAAEKETAYAPLDSKEVVPLSYAAHEVEVNSP KRLEQQTLLVSKRQEVVLLDNEITFNEAIIEERDQGIKEVQQQISEVNEIFKDLSVLV REQGAMIGKTCVSYILLLEYLTFLLKFLQSFGFECSKMLNVFSL" gene complement(32993603..32998337) /locus_tag="TCM_025482" /note="dbxref CacaoGD:Thecc1EG025482" mRNA complement(join(32993603..32993813,32994349..32995643, 32997682..32998337)) /locus_tag="TCM_025482" /product="Heat shock factor protein HSF8, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400005713" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016563t2" /inference="similar to AA sequence:frave:gene10474" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01345t00003" CDS complement(join(32994390..32995643,32997682..32997930)) /locus_tag="TCM_025482" /note="dbxref frave:gene10474; paralog of Thecc1EG016563t2" /codon_start=1 /product="Heat shock factor protein HSF8, putative" /protein_id="EOY10104.1" /db_xref="TAIR:AT5G16820.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S232" /translation="MDSLHDSISAANAAAATNGNTVPPFLSKTYDMVEDPSTNSVVSW SSGNNSFVVWKVPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLR GQKHLLKTISRRKPANVHNNQQPQVQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQE LVRLRQQQQTTDNQLQTVGQRVQLMEQRQQQMMSFLAKAMQSPGFLSQLVQQQNESNR RLTGGNKKRRLPRQDEENLTGEHGAISPNGQIVKFQPSLNEAAKAMLHQILKMNTSSR LESSMNSPGAFMIDGVPPSNAVDSGSSSSRISGVTLSEVPPASGQSYLQAESGFPDTC PSTATHLTTEHTKVDQISEINKSQKDAAFPNFPQMQGIVPGNTVEFTDASLAGSERGN TEYVDQMSAGLNGGMPVETDDFSTDHDMDILLEGTPKLPAINDVFWEQFLTTSPLTED TDEITSSSLENGANIEQESLLVQENGWDKIPHMNHLTEQIGLLTSDSRRG" gene 32998424..33009767 /locus_tag="TCM_025483" /note="dbxref CacaoGD:Thecc1EG025483" mRNA join(32998424..32998480,33000971..33001245, 33002233..33002383,33002448..33002516,33003664..33003744, 33003879..33003950,33004041..33004285,33004398..33004469, 33006140..33006256,33006348..33006429,33006558..33006604, 33007104..33007185,33007529..33007628,33008260..33008842, 33009737..33009767) /locus_tag="TCM_025483" /product="Kinase family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30073.m002278" /inference="similar to AA sequence:Phytozome:GSVIVT01024376001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11646t00001" mRNA join(33001019..33001245,33002233..33002331, 33002459..33002516,33003664..33003744,33003879..33003950, 33004041..33004285,33004398..33004469,33006140..33006256, 33006348..33006429,33006558..33006604,33007104..33007185, 33007529..33007628,33008260..33008834) /locus_tag="TCM_025483" /product="Kinase superfamily protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene29058" /inference="alignment:exonerate- protein:2:ricco:30073.m002278" /inference="similar to AA sequence:Phytozome:GSVIVT01024376001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11646t00001; inference alignment:Newbler:10:TSA:cgbaL_g11646t00001" CDS join(33001025..33001245,33002233..33002383, 33002448..33002516,33003664..33003744,33003879..33003950, 33004041..33004285,33004398..33004469,33006140..33006256, 33006348..33006429,33006558..33006604,33007104..33007185, 33007529..33007612) /locus_tag="TCM_025483" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Kinase family protein isoform 1" /protein_id="EOY10105.1" /db_xref="Phytozome:GSVIVT01024376001" /db_xref="TAIR:AT5G16810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GWD0" /translation="MLLTTANCFSSSSLLLPSLSRKPIFLFSKRPRVSSWVSSRNRSS RLCRASLITSSDSFEVGRLIGSYGFMNVTSYSGFQAGADFEYSSGDLGQLRVQDVGEG SVKIRCIFTDTCIFMDTIMQTKFICRLYEGRIAKGSFKGTPVIFKVYPGQRAGGIEAD MMAANELNAHAFLQNSSEGICKNLLLLLGGFETKTGEQWLAFRGDGKYSAADFAKVAS EKISRARSLEEMSWNPFEQEQAFKRKAYFVIKLFQGAMTGLAYMHNYDRLHQSLGPAS VVLNTIVERDAAYLVPRLRDLAFSVDIRFSYLEEGPKTFSEDLWRRASSAGAFTPMER RAFGIADDIYEAGLLFAYLAFVPFCEAGIMDSLSLQRLLESTFKLDLTATREYCLADD RLLEAVKFLDLGDGAGWELLQAMLNPDFRKRPIAEAVVNHRFMTANVL" CDS join(33001025..33001245,33002233..33002331, 33002459..33002516,33003664..33003744,33003879..33003950, 33004041..33004285,33004398..33004469,33006140..33006256, 33006348..33006429,33006558..33006604,33007104..33007185, 33007529..33007612) /locus_tag="TCM_025483" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Kinase superfamily protein isoform 2" /protein_id="EOY10106.1" /db_xref="Phytozome:GSVIVT01024376001" /db_xref="TAIR:AT5G16810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GWD0" /translation="MLLTTANCFSSSSLLLPSLSRKPIFLFSKRPRVSSWVSSRNRSS RLCRASLITSSDSFEVGRLIGSYGFMNVTSYSGFQAGADFEYSSGDLGQLRVQDVGEG SVKIRLYEGRIAKGSFKGTPVIFKVYPGQRAGGIEADMMAANELNAHAFLQNSSEGIC KNLLLLLGGFETKTGEQWLAFRGDGKYSAADFAKVASEKISRARSLEEMSWNPFEQEQ AFKRKAYFVIKLFQGAMTGLAYMHNYDRLHQSLGPASVVLNTIVERDAAYLVPRLRDL AFSVDIRFSYLEEGPKTFSEDLWRRASSAGAFTPMERRAFGIADDIYEAGLLFAYLAF VPFCEAGIMDSLSLQRLLESTFKLDLTATREYCLADDRLLEAVKFLDLGDGAGWELLQ AMLNPDFRKRPIAEAVVNHRFMTANVL" gene 33009682..33014590 /locus_tag="TCM_025484" /note="dbxref CacaoGD:Thecc1EG025484" mRNA join(33009682..33010153,33010895..33011118, 33011203..33011347,33011654..33011753,33011865..33012093, 33013402..33013449,33014127..33014590) /locus_tag="TCM_025484" /product="Acyl-CoA N-acyltransferases (NAT) superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30073.m002279" /inference="similar to AA sequence:ricco:30073.m002279" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00379t00001" CDS join(33011012..33011118,33011203..33011347, 33011654..33011753,33011865..33012093,33013402..33013449, 33014127..33014307) /locus_tag="TCM_025484" /note="dbxref ricco:30073.m002279" /codon_start=1 /product="Acyl-CoA N-acyltransferases (NAT) superfamily protein" /protein_id="EOY10107.1" /db_xref="TAIR:AT5G16800.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LFD8" /translation="MVNLKISHRPSICYRPIQPSDLAILEQIHSDVFPIRYESEFFQN VVNGRDIVSWAAVDRSRPNGQSDELIGFVTARIVLARDSEIADLLRYDSSKVDQTLVY VLTLGVVDAYRNLGIATALIRKVIKYASSIPVCRAIYLHVISYNNPAIHLYKKMSFKC VRMLHGFYLINGQHYDSYLFVYYVNGGRSPCSPLFDVLSLMGWSPPGCGRELVTVVLS CMKSGLKSVAAKLRQNEEKMVKWHKCKETRGLISTQNKGTIKTECSGCGYV" mobile_element 33014589..33014694 /note="source:scaffold_9_CACTA_0920 4415 4511" /mobile_element_type="transposon:TIR/CACTA" gene 33015322..33016821 /locus_tag="TCM_025486" /note="dbxref CacaoGD:Thecc1EG025486" mRNA join(33015322..33016004,33016137..33016821) /locus_tag="TCM_025486" /product="EXORDIUM like 2, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s07780.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s07780.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc3617t1" CDS join(33015386..33016004,33016137..33016546) /locus_tag="TCM_025486" /codon_start=1 /product="EXORDIUM like 2, putative" /protein_id="EOY10108.1" /db_xref="Phytozome:POPTR_0013s07780.1" /db_xref="TAIR:AT5G64260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I753" /translation="MHANASQICFALYFRSLNNLQKQSILGTMVSSPLSIRTLSLALF FILLFNPSLSYGYGHSKVVMTHHGGPLLTGTLNLALIWYGRCGRVQKSTIRNFIKSLN NEGDRTNLQPQVSSWWRVVESYQSAVPGARYGRRRSPRIIVNVVKQVSDLTYKYGKIL TTVDYIPKLVHDATNGDPNLIPVIVTARDVTVQGLCMGKCADHGVVENNKPYIIVGNP ETECPGSCGWPFHQSNYGPKGMVLQPPNVNMAADSMVIALATTLADTVTNPFNNGFYD GNMVHQVGPGSACRGIFGSGAFPGNPGKVHIDPTNGGAFNAHGNKGRKFLLPAVWNPR TSSCWTLM" gene 33017504..33021558 /locus_tag="TCM_025487" /note="dbxref CacaoGD:Thecc1EG025487" mRNA join(33017504..33017694,33018261..33018880, 33020052..33020215,33021537..33021558) /locus_tag="TCM_025487" /product="Tho complex subunit 7/Mft1p" /inference="alignment:exonerate- protein:2:ricco:30073.m002282" /inference="similar to AA sequence:Phytozome:Glyma13g30530.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g02208t00002" CDS join(33018287..33018880,33020052..33020183) /locus_tag="TCM_025487" /codon_start=1 /product="Tho complex subunit 7/Mft1p" /protein_id="EOY10109.1" /db_xref="Phytozome:Glyma13g30530.1" /db_xref="TAIR:AT5G16790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T1C3" /translation="MLGKGRKVSSRGETVAANYAFGPAEDDIIIKHRLLTRTTTTRGE PPLKKLQKKFTSFVLEVEKDEDNYNECAKLSKSFLQELSTFEIPLLKSKAVIDANLRE KENFNELKDEINRQILQAQTDIEDLKKQLEESKIERQHKEECEAIRKLISAQPPRSET QKSITELEKEIAAWEAENTAGSRLLELRKKQFALLLHVVDELQNTIEEEQKSLIEEMR MVTEEQKSGMEDANGGSEAMAVD" gene complement(33023984..33042587) /locus_tag="TCM_025488" /note="dbxref CacaoGD:Thecc1EG025488" mRNA complement(join(33023984..33024755,33024924..33025700, 33025817..33026086,33042334..33042587)) /locus_tag="TCM_025488" /product="Myb domain protein 107" /inference="alignment:exonerate- protein:2:Phytozome:Glyma12g01960.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016552t1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2682t1" CDS complement(join(33024722..33024755,33024924..33025700, 33025817..33026086,33042334..33042386)) /locus_tag="TCM_025488" /note="paralog of Thecc1EG016552t1" /codon_start=1 /product="Myb domain protein 107" /protein_id="EOY10110.1" /db_xref="TAIR:AT5G16770.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPK4" /translation="MPSIHTNISQTTLIKGHWDMMGRSPCCDENGLKKGPWTPEEDSI LVDYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQTIINLH AVLGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTDLNILANLPQ LLAAANFSSLMNIPLDNALRLQSDAAQLAKIQLLHNILQVLGSSSSTTTPTMEAMNLL AGPSLRENQLYELLRMNSQLEENRNLPFAFAPHELTQLQSNFLNLEASQHQPHQFSEY HQPMKDSKICSNNNDQFASSSSSPVIPTSTPQLPALVPASPGHPTTHVNQTENKINPN DISNPSSTSTTFEAWGDLMDDEASDSYWRDIIDQASSQSWTIS" mobile_element complement(33028459..33028907) /note="source:scaffold_9_CACTA_0946 17709 18236" /mobile_element_type="transposon:TIR/CACTA" gene complement(33036341..33041778) /locus_tag="TCM_025489" /note="dbxref CacaoGD:Thecc1EG025489" mRNA complement(join(33036341..33037014,33037336..33037450, 33037550..33037575,33037708..33037970,33041280..33041778)) /locus_tag="TCM_025489" /product="Uncharacterized protein" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.20 coverage" CDS complement(join(33036538..33037014,33037336..33037450, 33037550..33037575,33037708..33037970,33041280..33041487)) /locus_tag="TCM_025489" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10111.1" /translation="MVVNFYQSPDDIDGQHLHGFRRRYTLATLDHTQGATQRVEQSYG TAGLACTHEGGAYMNAHLLPRIVHAAHHQVITYDKWIDAMKNELDALEYNKTWTVVSF PDGAHTVGRKWVYKIKLKANGSIERYKAPLVANGNSQLERFDSHETLSPIAKHTTGSV LQLLECLEQITLCLQKLKNGEFVALLVYVDDIIIASSCVEATDKFMDKPTTGHLQATY RVLKYLKKAPGQGILLSSTSDIHLTVYINSDWAGCRDTGRPVTSFTVFLGHSLISWKS KKQGVVARCSAKAEYRAMVIACSEVVWLLCLLKDFDSNCLAAATMYCDNQVALHISRN PTFHERTKHIEVDYHFIREKMQAGVILP" mobile_element complement(33038224..33039838) /note="source:scaffold_5_CACTA_0615 596 2255" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33041289..33041314 /note="source:MITE_Unknown_5_4 1453 1478" /mobile_element_type="transposon:TIR/MITE" mobile_element 33041950..33043372 /note="source:MITE_Unknown_5_2 1 1423" /mobile_element_type="transposon:TIR/MITE" mobile_element 33044302..33044365 /note="source:INTACT445_F217_scaffold_8-int 1251 1314" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 33044366..33044431 /note="source:INTACT445_F217_scaffold_8-int 100 166" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(33044396..33044506) /note="source:scaffold_1_CACTA_0016 6347 6456" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33044507..33044718 /note="source:CACAO_M_S_E119699_F217_scaffold_9 140 357" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 33044736..33044822 /note="source:scaffold_4_CACTA_0483 2561 2646" /mobile_element_type="transposon:TIR/CACTA" gene 33045135..33046117 /locus_tag="TCM_025490" /note="dbxref CacaoGD:Thecc1EG025490" mRNA join(33045135..33045400,33045624..33046117) /locus_tag="TCM_025490" /product="MLP-like protein 423, putative" /inference="alignment:exonerate- protein:2:ricco:30073.m002284" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025494t1" /inference="similar to AA sequence:ricco:30073.m002284" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc6101t1" CDS join(33045217..33045400,33045624..33045913) /locus_tag="TCM_025490" /note="dbxref ricco:30073.m002284; paralog of Thecc1EG025494t1" /codon_start=1 /product="MLP-like protein 423, putative" /protein_id="EOY10112.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N2R4" /translation="MHGYISEDTLVEVPAAVIWEVYRGLQLGKLVNELIRDVIGEVEV VQGDGSVGTIVKVTFPPGTPGPSYMKEMFTKIDDEIRLKETEIIEGGFKEVGFDLYRI RLQILEKDAESSIVRSSVEYEIDDKLEEIASQVTTQPLKIMAEVIGKYLKERSST" mobile_element complement(33046581..33046649) /note="source:CACAO_Again_on_S_E195_scaffold_6 952 1018" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(33046631..33046743) /note="source:CACAO_Again_on_S_E203_scaffold_6 5 480" /mobile_element_type="transposon:TIR/hAT" mobile_element 33046744..33047101 /note="source:CACAO_on_SS_E42_scaffold_2 24149 24534" /mobile_element_type="transposon:TIR/Mutator" gene 33047974..33049896 /locus_tag="TCM_025491" /note="dbxref CacaoGD:Thecc1EG025491" mRNA join(33047974..33048212,33048312..33048372, 33048451..33048502,33048795..33048895,33049480..33049896) /locus_tag="TCM_025491" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30073.m002283" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025494t1" /inference="similar to AA sequence:ricco:30073.m002284" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(33048017..33048212,33048312..33048372, 33048451..33048502,33048795..33048895,33049480..33049669) /locus_tag="TCM_025491" /note="dbxref ricco:30073.m002284; paralog of Thecc1EG025494t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10113.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N2R4" /translation="MHRHLSQDTLVAVPATVVWDVYCGLKLGRLVDKLLRDVVGTVKV IEGNGGVGTLIRLTFPPGTGYKKFTKIDDENRVKETEVIEGGSSIEYEVDDKLAEIAS HMYCDDFLMLCVTKYVLSSKYVIVRVAFEWTLSRKRTSTVGFEAAIVWDVYRSLDLEM HADELRGDVVGKVEFVEGDGGVGSIVKVTFPLDKHVNLR" mobile_element 33048824..33049400 /note="source:CACAO_M_S_E66570_F28_scaffold_5 1 577" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(33050208..33056667) /locus_tag="TCM_025492" /note="dbxref CacaoGD:Thecc1EG025492" mRNA complement(join(33050208..33050237,33051828..33052337, 33056507..33056667)) /locus_tag="TCM_025492" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032186t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" mobile_element complement(33050897..33051555) /note="source:scaffold_4_CACTA_0482 16786 17459" /mobile_element_type="transposon:TIR/CACTA" CDS complement(33051846..33052193) /locus_tag="TCM_025492" /note="paralog of Thecc1EG032186t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10114.1" /translation="MVILLLFFSKVIGWSDSNMAEILAIKDVVLFYVALIWCSSHALW IETDSINAVKWIQDPSNAPWRLRSHVIQLSNQLSKVRNWRINHIRKSANEAIDSLAKE GIQWERNLFLVSS" mobile_element complement(33052867..33052962) /note="source:CACAO_PIF_E119_scaffold_3 4573 4667" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 33055755..33055838 /note="source:scaffold_4_CACTA_0511 7097 7183" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(33056127..33056300) /note="source:INTACT464_F222_scaffold_9-int 2222 2396" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 33056763..33057802 /locus_tag="TCM_025493" /note="dbxref CacaoGD:Thecc1EG025493" mRNA join(33056763..33057069,33057364..33057802) /locus_tag="TCM_025493" /product="MLP-like protein 423, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0003s08640.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025494t1" /inference="similar to AA sequence:ricco:30073.m002284" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14472t1" CDS join(33056886..33057069,33057364..33057659) /locus_tag="TCM_025493" /note="dbxref ricco:30073.m002284; paralog of Thecc1EG025494t1" /codon_start=1 /product="MLP-like protein 423, putative" /protein_id="EOY10115.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N2R4" /translation="MRGHLSQDTVVEVPAAVLWDVFRSLQLAKLVDELLGDVVGKVEV VQGDGGVGTILKIIFPPGTPGPGYMKERFTIIDDEIRLKEAETIEGGFKDVGFDVYRM RLQILEKDAESSIVRSSVDYEIDDKLQELASQATTKPMEILAEVVGKYLKEKLNSTK" mobile_element 33057117..33057207 /note="source:CACAO_Mariner_E637_scaffold_262 4029 4109" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene 33057855..33063899 /locus_tag="TCM_025494" /note="dbxref CacaoGD:Thecc1EG025494" mRNA join(33057855..33058111,33059630..33059903, 33060061..33060163,33062873..33063066,33063371..33063899) /locus_tag="TCM_025494" /product="MLP-like protein 423, putative" /inference="alignment:exonerate- protein:2:ricco:30073.m002283.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025493t1" /inference="similar to AA sequence:ricco:30073.m002284" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1146t3" mobile_element 33058004..33058112 /note="source:CACAO_Helitron_E81_scaffold_3 1 130" /mobile_element_type="transposon:Helitron" CDS join(33059720..33059903,33060061..33060163, 33062873..33063066,33063371..33063666) /locus_tag="TCM_025494" /note="dbxref ricco:30073.m002284; paralog of Thecc1EG025493t1" /codon_start=1 /product="MLP-like protein 423, putative" /protein_id="EOY10116.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N2R4" /translation="MHGHLSQDTQVAVPAAVIWDVYGTLELGRLVNKLLGDVIGSVEV IEGDGGVGTLIKVTFRPGSPVDGYMIEKFTKVDDENRVKETEIVEGGYKALGRRKMRG HLSQDTAVEVPAAVIWDVYRGLQLGKLADELLGDVVGKVEVVQGDGGVGTIVKVTFPP GTPGPGYMKERITIIDDEIRLKEAETIEGGFKDVGFDVYRMRLQILEKDAESSIVRSS VDYEIDDKLQELASQATTKPMEILAEVVGKYLKEKLNSTK" mobile_element complement(33060212..33062101) /note="source:INTACT700_F304_scaffold_7-int 5 1886" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 33062122..33062211 /note="source:INTACT433_F212_scaffold_1-int 3046 3136" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 33062133..33062222 /note="source:scaffold_4_CACTA_0511 7097 7189" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33063124..33063214 /note="source:CACAO_Mariner_E637_scaffold_262 4029 4109" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene 33065428..33066386 /locus_tag="TCM_025495" /note="dbxref CacaoGD:Thecc1EG025495" mRNA join(33065428..33065795,33065953..33066386) /locus_tag="TCM_025495" /product="MLP-like protein 423, putative" /inference="alignment:exonerate- protein:2:ricco:30073.m002283.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025494t1" /inference="similar to AA sequence:ricco:30073.m002284" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g13857t00001" CDS join(33065612..33065795,33065953..33066248) /locus_tag="TCM_025495" /note="dbxref ricco:30073.m002284; paralog of Thecc1EG025494t1" /codon_start=1 /product="MLP-like protein 423, putative" /protein_id="EOY10117.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N2R4" /translation="MHGHLSQDTPVAVPAAVVWDVYGTLELGRLVDKLLGDVIGSVEV IEGDGGVGTLVKVTFRPGSPVDGYMIEKFTKVDDENRVKETEIVEGGYKALGFDPFRV RLEILEKDSQSSIIRSSVEYEVDDKLAALASQVSIKPLEMIAEAIGKYLLEKETAQI" gene 33067040..33069368 /locus_tag="TCM_025496" /note="dbxref CacaoGD:Thecc1EG025496" mRNA join(33067040..33068071,33068626..33068791, 33069187..33069368) /locus_tag="TCM_025496" /product="Serine/threonine kinases,protein kinases,ATP binding,sugar binding,kinases,carbohydrate binding" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025502t1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.34 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8285t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc5430t1" CDS join(33067631..33068071,33068626..33068791, 33069187..33069221) /locus_tag="TCM_025496" /note="paralog of Thecc1EG025502t1" /codon_start=1 /product="Serine/threonine kinases,protein kinases,ATP binding,sugar binding,kinases,carbohydrate binding" /protein_id="EOY10118.1" /db_xref="TAIR:AT1G11300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NFD6" /translation="MSLVLHRSCYSLEFGTALDTTTSSKSIKDPEAITSSNGAFRLGF FSIVNSTSSCVGVWYSIGRPENSVIWVANRDKPLKDNSGVVMISEDGNLDLKGQKEIL WSSNVKNRAANVSAQVLDFGKLVLQDNSTDGVNLWESFQQPSNAFCERINSGNESGGE DGFLKLERTKVPDFAEWLATLEDKCKDQCLNNCSCIAYAYDPGPHITDLGSKA" gene complement(33068583..33074387) /locus_tag="TCM_025497" /note="dbxref CacaoGD:Thecc1EG025497" mRNA complement(join(33068583..33070138,33070359..33070453, 33070549..33070697,33072980..33073181,33073517..33073647, 33073792..33074387)) /locus_tag="TCM_025497" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g10240.1.2" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.30 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8291t1" mobile_element complement(33068891..33068958) /note="source:CACAO_on_E230_scaffold_8 5283 5349" /mobile_element_type="transposon:TIR/PIF-Harbinger" CDS complement(join(33069516..33070138,33070359..33070453, 33070549..33070697,33072980..33073181,33073517..33073647, 33073792..33074352)) /locus_tag="TCM_025497" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10119.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H021" /translation="MRRWVSACQRGRKGLRYLRMDCGPSGATDQDGREVSLGSQRTNN LCDSSKVGSIDNHQENRKGKKNQEKDNTMGQGKSGEGERCFGRGAQSSIDEERSRVVE TKLRRQGKVLEQKLINSGLSMSDDIILTNLVKEKDEGRQKRIKSKKSKDKKNKMGQKK IRDQETEEGANEAEQAKIMATREGKVKEALQTMEISRRLGLEFDAERNEVLKQMVEAE ERKKQGVSEQGVRCGLGNIYAPNEERYRNEMLEELKQIVTGNDLCWVLRGDFNTVRTE DERMGRGDVRRAVAQFNKFINEVKSNLQLAAGDGKNILFWTDWWIEEGILKDTYPRMY ALATNKRGYINEYGGGISLMQANGGQNSMEENCLGKAHSPILLQVKTWKVWSKWKWEW GARWAVPNNMINFFSMWNETEVKRGEYKVWRMAFYAIAWSVWLHRNEMVFKGVVWDAD KVYELSKLRVTTWAKAKWPQDYGMVLQTYQDPTLGKIMSKTKEKRAVDDWSKPATGQM KFNVDGAAQGCPRDAGIGGVLRDSDGRIKAIFSKTIGVGDASLAKVRAIREAFFVFAA SKWSQTHKLIIESDSKNAVK" gene complement(33074513..33078175) /locus_tag="TCM_025498" /note="dbxref CacaoGD:Thecc1EG025498" mRNA complement(join(33074513..33075681,33075844..33076204, 33077808..33078175)) /locus_tag="TCM_025498" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g10240.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031794t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.21 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc4232t1" CDS complement(join(33074773..33075681,33075844..33076014)) /locus_tag="TCM_025498" /note="paralog of Thecc1EG031794t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10120.1" /translation="MPKKVMLKKKMKEHERELEREVERNRRLGRERVRVRDWSDYRSS GKIAREGEGWTRAPKKRETKYAFVQCRFEDELLRAIRYDQNIKLDGRFLTVKEADKAK DGSKGRNQMVQKKMEEFIRERGLPSYREVVTNGMRGDTISKTGIDLSKVDGIKVKITG EEVEWLRRSALGHLKSQICYREVQSYLQKKGIMVLMRQAGDLNVIVTFGDKGEMEVLL DQYYDIFSIWFKDIKLYNMEKDERRYKVWVKIEELPFHLWHLKMFEAIGNCWGKFLKV DQETERKSRLDVAVIKVEVMSKRNVPVNQQIIVNGKAYIMRTSIIREESCDMERQACD ETFCKAWACLEPISVEQREVRWVEK" gene 33076192..33078075 /locus_tag="TCM_025499" /note="dbxref CacaoGD:Thecc1EG025499" mRNA join(33076192..33076318,33076414..33076622, 33076828..33076906,33077021..33077114,33077361..33077505, 33077580..33078075) /locus_tag="TCM_025499" /product="S-domain-1 13-like protein" /inference="alignment:exonerate- protein:2:TAIR:AT1G11300.1" /inference="similar to AA sequence:Phytozome:POPTR_0004s02660.1" /note="quality class is weak, express is weak, homology is ortholog weak, intron is none, protein is complete" CDS join(33076303..33076318,33076414..33076622, 33076828..33076906,33077021..33077114,33077361..33077505, 33077580..33077837) /locus_tag="TCM_025499" /codon_start=1 /product="S-domain-1 13-like protein" /protein_id="EOY10121.1" /db_xref="Phytozome:POPTR_0004s02660.1" /db_xref="TAIR:AT1G11350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BXZ2" /translation="MGKHRAKKEISGEKLMFNTREAHPKFLWDDTVEDNINEDKLLQL PLFKIEELAIATNNFNLSNKLEQCGFVAVYRAVAKKEKKKILAYKCLPNESLDAFILD PTKQELLDWKTRLNIIKGISRGLLYLHRDSSGYMSPEYAMEGHFSEKFDVFSYGVLLL EIINGRRNTSFYNNEHFSLAMAATHSLVVESDSANAINWVQHHCKVPWRMKNISNAIE TLLRKSIRITFKHVMREANKVADGLAKAGVLRYSNFKSYFQNQQGEST" gene complement(33078074..33090169) /locus_tag="TCM_025500" /note="dbxref CacaoGD:Thecc1EG025500" mRNA complement(join(33078074..33078425,33088987..33090118)) /locus_tag="TCM_025500" /product="Inositol 1,3,4-trisphosphate 5/6-kinase family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g09680.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016550t1" /inference="similar to AA sequence:ricco:30073.m002287" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8325t1" mobile_element 33078600..33083340 /note="source:INTACT874F_F37_scaffold_5-int 1 4741" /mobile_element_type="retrotransposon:LTR/Copia" gene 33084204..33087962 /locus_tag="TCM_025502" /note="dbxref CacaoGD:Thecc1EG025502" mRNA join(33084204..33085977,33086131..33086238, 33086329..33086498,33086562..33086772,33087046..33087115, 33087203..33087353,33087437..33087962) /locus_tag="TCM_025502" /product="S-locus lectin protein kinase family protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT1G11300.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030027t1" /inference="similar to AA sequence:Phytozome:POPTR_0011s03920.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.30 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2697t2" CDS join(33084567..33085977,33086131..33086238, 33086329..33086498,33086562..33086772,33087046..33087115, 33087203..33087353,33087437..33087736) /locus_tag="TCM_025502" /note="paralog of Thecc1EG030027t1" /codon_start=1 /product="S-locus lectin protein kinase family protein, putative" /protein_id="EOY10124.1" /db_xref="Phytozome:POPTR_0011s03920.1" /db_xref="TAIR:AT1G11330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H1U4" /translation="MASLILKKIQLRPGTNLYSDNCNLILKKKKQHVHRASILMKNRV MGIVSGSRFVVLLLLSCYCIKFGTAMDTITSSNSIKDPGAITSNSGVFRFGFFSPANS TDRYVGIWYNIGIPEQSVVWIANRNKPLKDDSGVVMIAEDGNLVVSNGQKEILWSSNV KSPAANTSAQVLDSGNLVLRGITDGASLWESFQQPSDAFVPTMKISTNVRTGEKVQLT SWKSSSDPSNGSFSLGLGPLSIPQVFIWNNTRPYWRTGPWNGLIFTGVEHMYSFYLDG FNLVDDKEGNFYIMFGLVGKSYLLYLYLNSQGKLIQRDWDEGKRDWNISWSAPETECD VYGKCGAFGSCDSQKQPICSCLRGFEPKITKEWTRGNWASGCVRSKPLQCERTNNGSK PSKDGFLKLEKMKVPDFAEWSPTLEDKCKEQCLNNCSCVAYAYDAGIGCMSWSENLID MQKLSTGGLDLYVRLEHSELDTTKERNRIIIITVVIGIIIIAISTFFLWRRKAKQRVN KAKSEEMLLPNKGDNIDEVELQRLPLLKFEELATATTNFSLSNKLGQGGFGPVYKGTL KDGQEIAVKRLSTGSGQGSEEFMTEVSVISTLQHRNLVRLLGCCVEGGERVLVYEYMP NRSLDAFLFDFGMARIFGGNQNQANTKRVVGTHGYMSPEYAMGGHFSEKSDVFSYGVL LLEIISGRRNTSFYNQEHSSSLLGFAWQLWNEDDIMALPYTDQCHFQEIKRCMHVGLL CVQEFAKDRPTISTVISMLNSEIVDLPTPKQPAFIERMIAVDIESPQNNQNRCSINDV TVTNVEGR" mobile_element 33086894..33086936 /note="source:CACAO_M_S_E119979_F330_scaffold_10 3662 3704" /mobile_element_type="retrotransposon:LTR/Copia" mRNA complement(join(33087783..33087997,33088987..33090169)) /locus_tag="TCM_025500" /product="Inositol 1,3,4-trisphosphate 5/6-kinase family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma17g09680.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016550t1" /inference="similar to AA sequence:ricco:30073.m002287" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1254t2; alternateUTRof:Thecc1EG025500t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8325t1" CDS complement(33089009..33089941) /locus_tag="TCM_025500" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30073.m002287; paralog of Thecc1EG016550t1" /codon_start=1 /product="Inositol 1,3,4-trisphosphate 5/6-kinase family protein, putative isoform 1" /protein_id="EOY10122.1" /db_xref="TAIR:AT5G16760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SBA5" /translation="MSNLPSELYRIGYALTSKKEQTFILPSLLSHAPQKGIVLTKVDP NKPLIQQVPFDCIIHKLYGSDWKQNLQDFTSQNPSIPIIDSPDYIEVLQNRISMLETV SKLKITNSGVPKQIAITEVTDMENLKLTFPLIAKPLDADGSETSHKLHLIFDNEGLKN LTAPFVLQEFVNHGGVVFKVYVAGKYFRCVKRKSLPDISEEKLVNLKGSLPFSQVSNL TAAGGGGGEGCDFEKTEMPPESLVEELVKGLREELRLNLFNFDVIRDGRNKDNYLVID INYFPGYAKMPDFESVITDFLLDVVRKEQISGED" CDS complement(33089009..33089941) /locus_tag="TCM_025500" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30073.m002287; paralog of Thecc1EG016550t1" /codon_start=1 /product="Inositol 1,3,4-trisphosphate 5/6-kinase family protein, putative isoform 1" /protein_id="EOY10123.1" /db_xref="TAIR:AT5G16760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SBA5" /translation="MSNLPSELYRIGYALTSKKEQTFILPSLLSHAPQKGIVLTKVDP NKPLIQQVPFDCIIHKLYGSDWKQNLQDFTSQNPSIPIIDSPDYIEVLQNRISMLETV SKLKITNSGVPKQIAITEVTDMENLKLTFPLIAKPLDADGSETSHKLHLIFDNEGLKN LTAPFVLQEFVNHGGVVFKVYVAGKYFRCVKRKSLPDISEEKLVNLKGSLPFSQVSNL TAAGGGGGEGCDFEKTEMPPESLVEELVKGLREELRLNLFNFDVIRDGRNKDNYLVID INYFPGYAKMPDFESVITDFLLDVVRKEQISGED" gene complement(33090280..33099179) /locus_tag="TCM_025503" /note="dbxref CacaoGD:Thecc1EG025503" mRNA complement(join(33090280..33091360,33092037..33092211, 33092287..33092417,33093051..33093170,33093389..33093465, 33093549..33093795,33093971..33094127,33095380..33095498, 33095601..33095735,33096084..33096372,33096537..33096754, 33097322..33097471,33097604..33097786,33098656..33099179)) /locus_tag="TCM_025503" /product="Transducin family protein / WD-40 repeat family protein" /inference="alignment:exonerate- protein:2:ricco:30073.m002288" /inference="similar to AA sequence:ricco:30073.m002288" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc736t3" CDS complement(join(33090995..33091360,33092037..33092211, 33092287..33092417,33093051..33093170,33093389..33093465, 33093549..33093795,33093971..33094127,33095380..33095498, 33095601..33095735,33096084..33096372,33096537..33096754, 33097322..33097471,33097604..33097786,33098656..33098952)) /locus_tag="TCM_025503" /note="dbxref ricco:30073.m002288" /codon_start=1 /product="Transducin family protein / WD-40 repeat family protein" /protein_id="EOY10125.1" /db_xref="TAIR:AT5G16750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I748" /translation="MAPVTFKRNYRCSQSLQQFYSGGPFAVSSDGSFIACACVESIKI VDSSNASTKSTIEAESGTITALALSPSDKLLFSAGHSRQIKVWDLDTLKCLRSWKGHD GPIMGMACHASGGLLATSGADRKVLVWDVDGGFCTHYFKGHKGVVSSIMFHPDVNKTL LFSGSDDATVRVWDLLAKKCVATLEKHFSAVTSMAVSEDGWTLLSAGRDKVVNLWDLH DYRCKSTVPTYEVLEAVCIINSGSCFALSMGAFRQQSGKRKSGSTGDYFITAGERGIV RIWNSEGAVCLYEQKSSDVTVSSDVDEDSTMGFTSAVMLPLDQGLLCVTADQQFLFYN PEEHLEENWNLKLTKRLVGFNDEIVDMKFLDDEEQYLAVATNLEQVRVYDLSSMSCSY VLAGHTDTILCLDTSLSSYGRRLIVTGSKDNSVRLWEAERRCCIGLGIGHMGAVGAVA FSKKCRDFFVSGSSDRTIKVWSLNGLSDDIEQPINLKAKAVVAAHDKDINSLAVAPND SLVCSGSQDRTACVWRLPDLVSVVKFIGHKRGIWSVEFSPVDQCVITASGDKTVKIWA IADGSCLKTFEGHTSSVLRASFLTRGTQFVSCGADGLVKLWTIKTNECIATYDQHEDK VWALAVGKKTEMLATGGSDAVINLWHDSTAADKEEAFRKEEEGVLRGQELENAVLDAE YMKAIQIALELRRPHKLFELFSGLCRKRDAEDQIDKALHALSKEEFHLLFEYAREWNT KPKLCHIAQFVLFRAFNILPPTEIIEIKGIGELLEGLIPYSQRHFSRIDRLIRSTFLL DYTLMGMSVIGPVTQGDLKTRSLLHSGKDMDDAPSTDKADEDQKQVSEGLKDKASAKK RKSRKSGEGSHSHKKVKGVAHANNGAIPLQA" gene complement(33099387..33101911) /locus_tag="TCM_025504" /note="dbxref CacaoGD:Thecc1EG025504" mRNA complement(join(33099387..33099800,33099877..33099920, 33100244..33100381,33101517..33101911)) /locus_tag="TCM_025504" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01027236001" /note="quality class is medium-utrpoor, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.38 coverage" CDS complement(join(33099662..33099800,33099877..33099920, 33100244..33100375)) /locus_tag="TCM_025504" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10126.1" /translation="MIDPAVKGTLNVLRPCVKVPSIKRLIITSYVTAALFSGKPLADD LSSFLDQFGSLLNFKCTDEKQSIPVLQVSQERAKSLGVNFTPIEVSLKDTFESLKEKN FL" mobile_element 33100969..33101023 /note="source:CACAO_M_E58620_F277_scaffold_9 1961 2020" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 33102003..33113084 /locus_tag="TCM_025506" /note="dbxref CacaoGD:Thecc1EG025506" mRNA join(33102003..33102465,33103570..33103683, 33112141..33113084) /locus_tag="TCM_025506" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025511t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s27000.1" /note="quality class is medium-utrpoor, express is medium, homology is paralog medium, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.45 coverage" gene complement(33102276..33104215) /locus_tag="TCM_025507" /note="dbxref CacaoGD:Thecc1EG025507" mRNA complement(join(33102276..33102964,33103583..33104215)) /locus_tag="TCM_025507" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.23 coverage" CDS complement(join(33102840..33102964,33103583..33103679)) /locus_tag="TCM_025507" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10128.1" /translation="MFGGAAAVAVGGACAAGGAAAGGLGRPKAAAIMAGGFVECLDFP LCAWVIFMSAPCLCPCASCDNIVPMKGYL" mobile_element complement(33103825..33104035) /note="source:CACAO_M_S_E51731_F238_scaffold_4 312 520" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 33104105..33104401 /note="source:CACAO_M_S_E51731_F238_scaffold_4 1 308" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(33106051..33106703) /note="source:CACAO_M_E4753_F17_scaffold_2 7256 7829" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 33106134..33107095 /note="source:scaffold_2_CACTA_0244 12398 13471" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(33106600..33107227) /note="source:scaffold_9_CACTA_0932 2819 3421" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(33107227..33107684) /note="source:INTACT135F_F90_scaffold_2-int 13563 14008" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(33107238..33107954) /note="source:scaffold_10_CACTA_0140 6586 7307" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33109147..33109487 /note="source:INTACT135F_F90_scaffold_2-int 13176 13960" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 33109488..33109924 /note="source:scaffold_2_CACTA_0244 14256 14697" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33109925..33109951 /note="source:INTACT135F_F90_scaffold_2-int 13961 14026" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(33110085..33113047) /locus_tag="TCM_046800" /note="dbxref CacaoGD:Thecc1EG046800" mRNA complement(join(33110085..33110245,33110469..33110666, 33110984..33111081,33112848..33113047)) /locus_tag="TCM_046800" /product="NAD(P)-binding Rossmann-fold superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01027236001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046802t1" /inference="similar to AA sequence:Phytozome:GSVIVT01012306001" /note="quality class is strong-expertchoice, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.15 coverage" CDS complement(join(33110231..33110245,33110469..33110666, 33110984..33111081,33112848..33113022)) /locus_tag="TCM_046800" /note="paralog of Thecc1EG046802t1" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein, putative" /protein_id="EOY10129.1" /db_xref="Phytozome:GSVIVT01012306001" /db_xref="TAIR:AT5G19440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AVV8" /translation="MEQMKCFSFFNADLLDVSSFDAVVDGRIGVFNTASPFLSQCEGS TGNSPLMYRIAFPRELLDDGAFDSVVDGCIVVSHTASPCYYNVKNPQFQAEMIDPAVK GTLNVLRSCAKVPSIKRVIITSSFGAVVFTGKPLADNVVVDETWFSDPVICEKSKLVD E" CDS 33112280..33112675 /locus_tag="TCM_025506" /note="paralog of Thecc1EG025511t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10127.1" /db_xref="Phytozome:POPTR_0001s27000.1" /translation="MEKSRVLGLTLAALCVITSEYACNGSESNPATLFDFGNDLNDPE NRLSSWQGSNSCQWQGCGCNNNNGAVVVIDPRKSYPVNSESSSRYGFWNLIGDISPSL LKLRYLEYLDSSLDTFNKLDYMEYSTKSW" gene complement(33113160..33118012) /locus_tag="TCM_046801" /note="dbxref CacaoGD:Thecc1EG046801" mRNA complement(join(33113160..33113616,33114065..33114251, 33115190..33115352,33116010..33116201,33116742..33116911, 33117770..33118012)) /locus_tag="TCM_046801" /product="NAD(P)-binding Rossmann-fold superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0009s06270.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046803t1" /inference="similar to AA sequence:Phytozome:GSVIVT01012306001" /note="quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02463t00002" CDS complement(join(33113472..33113616,33114065..33114251, 33115190..33115352,33116010..33116201,33116742..33116911, 33117770..33117887)) /locus_tag="TCM_046801" /note="paralog of Thecc1EG046803t1" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein" /protein_id="EOY10130.1" /db_xref="Phytozome:GSVIVT01012306001" /db_xref="TAIR:AT5G19440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L9G4" /translation="MSETGKVVCVTGASGYIASWLVKFLLQRGYTVKATVRDPSDPKK TEHLLALDGAKERLHLFKAELLDEGAFDSVVDGCVGVFHTASPFYHNIKDPQAEMIDP AVKGTLNVLRSCAKVPSIKRVVITSSVAAVVYNGRPLGPDVKVDETWFSDPTFCEKSK LWYMLSKTLAEEAAWKYAKDNGIDMVTVNPGLVIGPLLQPTINASVEPILKLINGAET FPNTNYRLIDVRDVANAHILAYENSSACGRYLLVERPMPCSEIVQALRELYPALRLPE KCADEKLAIPAFQVSKDRAKSLGVKFTPIEVSIKDTVESLKEKNFFSG" mobile_element complement(33118055..33118339) /note="source:scaffold_2_CACTA_0244 14257 14553" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33118163..33118375 /note="source:CACAO_Helitron_E81_scaffold_3 1217 1425" /mobile_element_type="transposon:Helitron" gene 33118955..33121243 /locus_tag="TCM_025509" /note="dbxref CacaoGD:Thecc1EG025509" mRNA join(33118955..33119401,33119606..33119970, 33120458..33121243) /locus_tag="TCM_025509" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s26990.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025511t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s27000.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1788t4_C1" CDS join(33119118..33119401,33119606..33119970, 33120458..33120663) /locus_tag="TCM_025509" /note="paralog of Thecc1EG025511t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10131.1" /db_xref="Phytozome:POPTR_0001s27000.1" /translation="MGKFTVLGLVLAVLCVITGECICTGDSHSANCSKPDLEALFDFE SGLNDPENRLSSWQGSNHYQWNGIGRNNSTGAVIMIDLQNPYPLNSESSSSLQFLDVS SEFGSLSSDSLEWVAGPVSLKHLAMTEVDLSMVGSGLVWMLSRLSFLNELHLSECQIS GSISSFNPVNLTSLSVLDLSFKSFSSGFPDWVVNISSLTYVDSSYCGLAGRIPLGFVF WSVWNVVEVGGECLSNGIANPTLVQIKQHYEEVAKRYKALSCLQFAISDTIVTRTMKV WDTLREEF" mobile_element complement(33120086..33120171) /note="source:CACAO_on_E683_scaffold_9 133 223" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 33120125..33120183 /note="source:CACAO_on_E545_scaffold_5 788 844" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(33120985..33122709) /locus_tag="TCM_046802" /note="dbxref CacaoGD:Thecc1EG046802" mRNA complement(join(33120985..33121589,33121669..33121860, 33122205..33122709)) /locus_tag="TCM_046802" /product="NAD(P)-binding Rossmann-fold superfamily protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046801t1" /inference="similar to AA sequence:Phytozome:GSVIVT01032178001" /note="quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc5301t1" CDS complement(join(33121548..33121589,33121669..33121860, 33122205..33122378)) /locus_tag="TCM_046802" /note="paralog of Thecc1EG046801t1" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein" /protein_id="EOY10132.1" /db_xref="Phytozome:GSVIVT01032178001" /db_xref="TAIR:AT5G19440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AVV8" /translation="MYDLKKTEHLLALDGANERLHLFKAELLEEGAFDSVVDGCIGVF HTASPCYYNAENPQAEMIDPAVKGTLNVFRSCVKVPSIKRVIITSSLGAVVFTGKPLA DNGVIDETWFSDPVICQKSKELLVLTYHQVQVM" gene 33122804..33123698 /locus_tag="TCM_025510" /note="dbxref CacaoGD:Thecc1EG025510" mRNA join(33122804..33122943,33123070..33123199, 33123338..33123698) /locus_tag="TCM_025510" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025506t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.35 coverage" CDS join(33122807..33122943,33123070..33123199, 33123338..33123499) /locus_tag="TCM_025510" /note="paralog of Thecc1EG025506t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10133.1" /translation="MEKSRVLGLMLAALCVITSEYSCNGSESDHEALFGLGNDLNDPE KRYGFWNLTGDISPSLLKLRYLEYLDSSLDTFNELDYMELLHQVLVLACWFGYGINCL KKLAGACQNPQMKDYTTLHGASGERYTVPKRRITCGSFTL" gene complement(33123737..33128566) /locus_tag="TCM_046803" /note="dbxref CacaoGD:Thecc1EG046803" mRNA complement(join(33123737..33124226,33124692..33124878, 33125822..33125984,33126650..33126841,33127406..33127575, 33128440..33128566)) /locus_tag="TCM_046803" /product="NAD(P)-binding Rossmann-fold superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0009s06270.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046801t1" /inference="similar to AA sequence:Phytozome:GSVIVT01012306001" /note="quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8357t3" CDS complement(join(33124082..33124226,33124692..33124878, 33125822..33125984,33126650..33126841,33127406..33127575, 33128440..33128557)) /locus_tag="TCM_046803" /note="paralog of Thecc1EG046801t1" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein" /protein_id="EOY10134.1" /db_xref="Phytozome:GSVIVT01012306001" /db_xref="TAIR:AT5G19440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L9G4" /translation="MSGTGKVVCVTGASGYIASWLVKFLLQRGYTVKATVRDPSNPKK TEHLVALDGAKERLHLFKAELLDEGAFDSVVDGCVGVFHTASPFYLDVKDPQAEMIDP AVKGTLNVLRSCAKVPSIKRVVITSSIVAVIFNGRPLGPDVLVDETWFSNPTFCEKSK LWYMLSKTLAEEAAWKYAKENGIQMVTVNPGLVIGPLLQPTINTSVEPILKLINGAET FPNTSYRLIDVRDVANAHIIAYENSSACGRYLLVERVMHCSEIVQALRELYPALRLPE RCADEKVGMPVFQVSKDRAKSLGVNFTPTEVSIKDTVESLKEKNFFSV" gene 33129208..33133209 /locus_tag="TCM_025511" /note="dbxref CacaoGD:Thecc1EG025511" mRNA 33129208..33133209 /locus_tag="TCM_025511" /product="Disease resistance family protein / LRR family protein, putative" /inference="alignment:exonerate- protein:2:ricco:29804.m001520" /inference="similar to AA sequence:ricco:29804.m001520" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8319t1" CDS 33129350..33132484 /locus_tag="TCM_025511" /note="dbxref ricco:29804.m001520" /codon_start=1 /product="Disease resistance family protein / LRR family protein, putative" /protein_id="EOY10135.1" /db_xref="TAIR:AT2G34930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GFB5" /translation="MGQFTVLGLVLAVLCVITGEYICTGDSHLANCSKPDLEALFDFK SGLNDPENRLSSWQGSNCCQWNGIGCNNSTGAVIMIDLHNPYPINSESSSRYGFWNLS GDISPSLLKLKSLQYLDLSLNTFNDISIPEFLGSSKNLRYLNLSKAGFTGVIPASLGN LSSLQFLDVSSEFGSLSSDSLEWVAGLVSLKHLAMNNVNLSLVGSGLVGMLSRLSFLN ELHLSECQIFGSISSLNPVNLTSLSVLDLSFNSFSSGFPDWVVNISSLTYVDLSYCGL AGRIPLGFGELPNLLYLNLAGNSNLSASCYQLLRRSWKKIEVLNLASNKIHGKLPASI GNMTSLTNFDLFDNNVEGGIPSSIGKLCSLKSFDLSGNNLTGSLPQFLEGVQNCVSNM PLPNLMYLRLSNNHLVGTLPEWIGQLQNLIELSLNYNLLEGSIPASLGQLSNLTDLGL GGNELNGTVPDSFGLLSGLSTFDVSSNHLTGFISEAHFSKLSKLKILHLSANSLVVNV SSDWISPFQVRNLDMGSCYLGPSFPTWLRSQKEVKFLDFSNASISGSFPNWFWDISGN LSLLNVSFNQLQGQLPNPLNVAPFADVDFSSNLFEGPIPVPTVEIELLDLSNNQLSGP IPQNMSESMPNLIFLSLSSNQLTGGIPNTIGEMLSLQVIDLSRNKLDGSIPPSIGNCS YLKVLDLRNNNLSGVIPDTLGQLLQLQSLHLNNNNLTGSIPPSFKSLSSLETLDLGNN SLFGSIPLWIGDGFPALRILSLRSNVFSGEIPSKISNLSSLQILDLAENNLTGTIPAS LGDLKAIAKEQNIIQYLLYGKYRGLYYEESSIIVLKGQTLKFTKTLSLVTSIDLSGNK LNGDFPEALTKLSGLVVLNLSRNHITGDISGNISDLQQLSSLDLSSNNLSGAIPSGLS SLSFLAYLNLSNNYFSGAIPYVGHLTTFDASSFSGNQGLCGAPLTIKCENNGFDRGGT VEGGSGEEIIDQWFYLSVGLGFAAGILVPLLIISTRKPWVDSYFGLVEKIIDISVLSN IATERHKNGNVRRN" mobile_element complement(33131334..33131373) /note="source:scaffold_10_CACTA_0128 1392 1431" /mobile_element_type="transposon:TIR/CACTA" gene 33133260..33136452 /locus_tag="TCM_025512" /note="dbxref CacaoGD:Thecc1EG025512" mRNA join(33133260..33133787,33134034..33134111, 33134239..33134338,33135256..33135398,33135860..33136452) /locus_tag="TCM_025512" /product="Structural constituent of ribosome, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032192001" /inference="similar to AA sequence:Phytozome:GSVIVT01032192001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc964t1" CDS join(33133446..33133787,33134034..33134111, 33134239..33134338,33135256..33135398,33135860..33136069) /locus_tag="TCM_025512" /codon_start=1 /product="Structural constituent of ribosome, putative" /protein_id="EOY10136.1" /db_xref="Phytozome:GSVIVT01032192001" /db_xref="TAIR:AT5G13720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7M5V7" /translation="MALSSASVFSHPLSISTASRRPLTGFHRRHHGSPSFATLSSPSS EPSSSSSPPPAVATTPSSTESILSSTIQQPKPFVESSRPHDSSSLNYALANPNGNPMV RFARSTESNIEKTIFDFRFLAILAVGGSLAGSLLCFLNGCVYIVDAYKVYWTCCVKGI HTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNVNPDVPADVDRALKGSSLFGMF AMKERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMVTIATGMDLLSYSVCIFLS SASLYILHHLHKPE" gene 33139457..33141385 /locus_tag="TCM_025514" /note="dbxref CacaoGD:Thecc1EG025514" mRNA join(33139457..33139610,33140157..33141385) /locus_tag="TCM_025514" /product="Structural constituent of ribosome" /inference="alignment:exonerate-protein:2:frave:gene29493" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025512t1" /inference="similar to AA sequence:Phytozome:GSVIVT01032192001" /note="quality class is medium, express is weak, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.13 coverage" CDS 33140757..33140987 /locus_tag="TCM_025514" /note="paralog of Thecc1EG025512t1" /codon_start=1 /product="Structural constituent of ribosome" /protein_id="EOY10137.1" /db_xref="Phytozome:GSVIVT01032192001" /db_xref="TAIR:AT5G13720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7M5V7" /translation="MNVFGLQERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMV TIATGMELLSYSVCILLSSASLYILHYLHKPE" mobile_element complement(33144212..33144286) /note="source:scaffold_1_CACTA_0005 6277 6351" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33145527..33145633 /note="source:CACAO_on_E22_A_scaffold_2 4875 4982" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 33146204..33146312 /note="source:CACAO_on_E22_A_scaffold_2 4874 4982" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 33147550..33147641 /note="source:INTACT433_F212_scaffold_1-int 3050 3146" /mobile_element_type="retrotransposon:LTR/Copia" gene 33148898..33165054 /locus_tag="TCM_025515" /note="dbxref CacaoGD:Thecc1EG025515" mRNA join(33148898..33149191,33149634..33149811, 33149887..33150040,33150568..33150641,33151796..33151945, 33152024..33152128,33152204..33152349,33152810..33152921, 33153022..33153177,33153770..33153891,33153984..33154128, 33154211..33154276,33156435..33156563,33156654..33156752, 33156852..33157017,33157119..33157264,33157472..33157535, 33157629..33157753,33157943..33158020,33159037..33159109, 33159789..33159892,33160523..33160639,33160715..33160792, 33161915..33162014,33162096..33162150,33163139..33163187, 33163271..33163358,33163461..33163533,33164219..33164322, 33164403..33165054) /locus_tag="TCM_025515" /product="Structural maintenance of chromosomes 5 smc5, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01032195001" /inference="similar to AA sequence:Phytozome:GSVIVT01032195001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8339t5" CDS join(33149154..33149191,33149634..33149811, 33149887..33150040,33150568..33150641,33151796..33151945, 33152024..33152128,33152204..33152349,33152810..33152921, 33153022..33153177,33153770..33153891,33153984..33154128, 33154211..33154276,33156435..33156563,33156654..33156752, 33156852..33157017,33157119..33157264,33157472..33157535, 33157629..33157753,33157943..33158020,33159037..33159109, 33159789..33159892,33160523..33160639,33160715..33160792, 33161915..33162014,33162096..33162150,33163139..33163187, 33163271..33163358,33163461..33163533,33164219..33164322, 33164403..33164464) /locus_tag="TCM_025515" /codon_start=1 /product="Structural maintenance of chromosomes 5 smc5, putative" /protein_id="EOY10138.1" /db_xref="Phytozome:GSVIVT01032195001" /db_xref="TAIR:AT5G15920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RVK1" /translation="MEEPRVKRLKISRGEDDYLPGNITEIELHNFMTFNHLVCKPGSR LNLVIGPNGSGKSSLVCAIALCLGGEPQLLGRATNIGAYVKRGEESGYIKISLRGYTE EEQSTIVRKINTRNKSEWLYNGKSVPKREILEVIRKFNIQVNNLTQFLPQDRVCEFAK LTPIQLLEETEKAVGDPQLPVQHCALVEKSCELKRYQKAVEKMGESLKQLIALNAEQE KDVERVRQRDELLEKVNYMKKKLPWLKYDMKKAEYLKAQEREKDAEKKLDEAAKILNE FKAPIEKQKQEKAKLDHKCKHISNLMNENVKKRIDLLQKENEAAVQVRGKYKEVEDLR REEDSRKQRILEAERKLAAAEQDLQNLPAYEPPKEEIDKLSSQIVELTSSARQKMQQK KEKEKSLGQMKTALRNCMDSLRDMENTNSKLLRALRNSGAEKIFDAYEWVQLHRHELN KEVYGPVLLEVNVADQVHANFLEGHVAHYIWKSFITQDSSDRDFLVKNLQSFDVPILN YVRDESGRKAPFEISKQMHELGIYSRLDQVFDAPTAVKEVLTSQFGLEHSYIGSDKTD RKADDVAKLGILDFWTPQNHYRWSVSRYDNHISGTVESVRDSRLLLCGLDTGEIEKLR SRKNELENSVADMEEGIKSLQIQQRLLEDEAAKLHKQREEMINIGKREKQKRREMESC VEQRQKKLASLEEVVDLETAVAKLIDQATRSNVQRFKHAIKIKDLLVEAVSCKWSFAE KHMVSIEYDAKIRDLEVNLKQHEKFAHQASLHLEYCKKDVEDCHQQLSAAKRHAETIA IITPELAKLFLEMPTTIEELEAAIQDNISQANSIVFLNRNILQEYEDRQCQIETISAK LEADNKELQKCLADIDALKGNWLPTLRNIVNQINETFSRNFQEMAIAGEVSLDEHDTD FDQFGILIKVKFRQTGQLQVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQ GMDPINERKMFQQLVRAATQPNTPQCFLLTPKLLPNLEYSEACSILNIMNGPWIEAPS KVWSSGECWGTIAGLVDESRC" gene 33165510..33172400 /locus_tag="TCM_025516" /note="dbxref CacaoGD:Thecc1EG025516" mRNA join(33165510..33165845,33166976..33167031, 33167561..33167685,33167778..33167869,33168468..33168673, 33169009..33169197,33169287..33169487,33170382..33170535, 33170661..33170724,33171402..33171458,33171539..33171577, 33171816..33172400) /locus_tag="TCM_025516" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024350001" /inference="similar to AA sequence:Phytozome:GSVIVT01024350001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01220t00001" mRNA join(<33165641..33165845,33166976..33167031, 33167561..33167685,33167778..33167869,33168468..33168673, 33169009..33169197,33169287..33169487,33170382..33170535, 33170661..33170724,33171402..33171458,33171539..33171577, 33171819..>33171832) /locus_tag="TCM_025516" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024350001" /inference="similar to AA sequence:Phytozome:GSVIVT01024350001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01220t00001; inference alignment:Newbler:10:TSA:cgbaB_g01220t00001" CDS join(<33165642..33165845,33166976..33167031, 33167561..33167685,33167778..33167869,33168468..33168673, 33169009..33169197,33169287..33169487,33170382..33170535, 33170661..33170724,33171402..33171458,33171539..33171577, 33171819..>33171832) /locus_tag="TCM_025516" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY10140.1" /db_xref="Phytozome:GSVIVT01024350001" /db_xref="UniProtKB/TrEMBL:UniRef50_A9RLH9" /translation="KTLIVGFSFSQSPSLWTPFSWRGFCHFSARKTKMRNLILRRFIQ TTSSSLSRSSTSRSTLPFLLSSRRNAVSSPLVEEEGEKVVFPRESPGFSYGLNWALAG KGVIVKDKAFQNLKSSELQQKGATVSESLSGLPVHVRGILGGASAISKAQYSKLLKQV TTHMSSVSDIFVHDGAVGSSPKFDAKVRLISDGPSAVLKLSNVLWETPTRAVSHDSCP LTVYAATSISEAVGDAVGLGDQGSNGFIAADVERSSLILCGKAFADINGTKEALAALS GPVISARGGLPLAARLLVSGDSVILLFAPENAIQNCADLLVSADAGVVLSPQGVAPLF QTKKSSGDNLYKMPSAVILATSDSSGSIPSVAKLSPGQAAYQFLAGYQNGEFVPAYAK GPSCIDALDLAKALLSKLKEHQIPTFLVNIGEGGKSVTGKDLLKLVGSAKVAPFELKG GDLQGKYNAFLSVDEGW" CDS join(33165741..33165845,33166976..33167031, 33167561..33167685,33167778..33167869,33168468..33168673, 33169009..33169197,33169287..33169487,33170382..33170535, 33170661..33170724,33171402..33171458,33171539..33171577, 33171816..33171841) /locus_tag="TCM_025516" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY10139.1" /db_xref="Phytozome:GSVIVT01024350001" /db_xref="UniProtKB/TrEMBL:UniRef50_A9RLH9" /translation="MRNLILRRFIQTTSSSLSRSSTSRSTLPFLLSSRRNAVSSPLVE EEGEKVVFPRESPGFSYGLNWALAGKGVIVKDKAFQNLKSSELQQKGATVSESLSGLP VHVRGILGGASAISKAQYSKLLKQVTTHMSSVSDIFVHDGAVGSSPKFDAKVRLISDG PSAVLKLSNVLWETPTRAVSHDSCPLTVYAATSISEAVGDAVGLGDQGSNGFIAADVE RSSLILCGKAFADINGTKEALAALSGPVISARGGLPLAARLLVSGDSVILLFAPENAI QNCADLLVSADAGVVLSPQGVAPLFQTKKSSGDNLYKMPSAVILATSDSSGSIPSVAK LSPGQAAYQFLAGYQNGEFVPAYAKGPSCIDALDLAKALLSKLKEHQIPTFLVNIGEG GKSVTGKDLLKLVGSAKVAPFELKGGDLQGKYNAFLSGVDEGWDH" mobile_element 33166235..33166294 /note="source:scaffold_9_CACTA_0939 4965 5026" /mobile_element_type="transposon:TIR/CACTA" mRNA join(33167380..33167685,33167778..33167869, 33168468..33168673,33169009..33169197,33169287..33169487, 33170382..33170535,33170661..33170724,33171402..33171458, 33171539..33171581,33171819..33172001) /locus_tag="TCM_025516" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024350001" /inference="similar to AA sequence:Phytozome:GSVIVT01024350001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc434t8_C1; inference alignment:Newbler:10:TSA:cgbaB_g01220t00001" CDS join(33168480..33168673,33169009..33169197, 33169287..33169487,33170382..33170535,33170661..33170724, 33171402..33171458,33171539..33171581,33171819..33171822) /locus_tag="TCM_025516" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY10141.1" /db_xref="Phytozome:GSVIVT01024350001" /db_xref="UniProtKB/TrEMBL:UniRef50_A9RLH9" /translation="MSSVSDIFVHDGAVGSSPKFDAKVRLISDGPSAVLKLSNVLWET PTRAVSHDSCPLTVYAATSISEAVGDAVGLGDQGSNGFIAADVERSSLILCGKAFADI NGTKEALAALSGPVISARGGLPLAARLLVSGDSVILLFAPENAIQNCADLLVSADAGV VLSPQGVAPLFQTKKSSGDNLYKMPSAVILATSDSSGSIPSVAKLSPGQAAYQFLAGY QNGEFVPAYAKGPSCIDALDLAKALLSKLKEHQIPTFLVNIGEGGKSVTGKDLLKLVG SAKVAPFELKGGDLQGKYNAFLSGN" mobile_element 33175711..33175839 /note="source:scaffold_7_CACTA_0795 2902 3038" /mobile_element_type="transposon:TIR/CACTA" gene 33175925..33178469 /locus_tag="TCM_025517" /note="dbxref CacaoGD:Thecc1EG025517" mRNA join(33175925..33176456,33176714..33176871, 33177284..33177475,33177599..33177936,33178218..33178469) /locus_tag="TCM_025517" /product="NAD(P)-binding Rossmann-fold superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s07700.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015689t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s07700.2" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14483t1" CDS join(33176333..33176456,33176714..33176871, 33177284..33177475,33177599..33177936,33178218..33178314) /locus_tag="TCM_025517" /note="paralog of Thecc1EG015689t1" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein, putative" /protein_id="EOY10142.1" /db_xref="Phytozome:POPTR_0013s07700.2" /db_xref="TAIR:AT2G23910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2EB77" /translation="MASPDNARAVCVMDASGHLGSALVHLLLHRGYTVHAAVQHHGEF QSFGGLPCSNEKLKVFHADLFDYHSITNALEGCCGLFYCFEPPSDHSTYDEFMAEVEV RAAHNVLEACARTDTVEKVVFTSSVTAVIWNEVRNTSSTDLDERNWSDINFCKKFKLW HALSKTLAEKSAWALAMDRGINMVTINAGLLMTPDLTITNPYLKGAAEMYEDGVFVTV DLRFIADAHISVFEDISAYGRYLCFNHVINRSHDADKIAHMLLPSSHSSPPQSSNDKI IYQQRLSNKKLNNMMMEYENEQLVTN" gene complement(33177774..33184403) /locus_tag="TCM_025518" /note="dbxref CacaoGD:Thecc1EG025518" mRNA complement(join(33177774..33177844,33178800..33179114, 33179292..33180034,33180771..33180913,33181647..33181832, 33181920..33182035,33182462..33182576,33182844..33182945, 33183893..33184403)) /locus_tag="TCM_025518" /product="Plasma membrane isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s07670.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s07670.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11385t00001" mRNA complement(join(33177908..33177936,33178833..33180034, 33180771..33180913,33181647..33181832,33181920..33182035, 33182462..33182576,33182844..33182945,33183893..33184181)) /locus_tag="TCM_025518" /product="Plasma membrane isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s07670.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s07670.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc257t2; alternateUTRof:Thecc1EG025518t1; inference alignment:Newbler:10:TSA:cgbaL_g11385t00001" mRNA complement(join(33177913..33177936,33178833..33179458, 33179934..33180034,33180771..33180913,33181647..33181832, 33181920..33182035,33182462..33182576,33182844..33182945, 33183893..33184251)) /locus_tag="TCM_025518" /product="Plasma membrane isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s07670.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s07670.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc194t7_C1; inference alignment:Newbler:10:TSA:cgbaL_g11385t00001" mRNA complement(join(33178788..33180034,33180771..33180913, 33181647..33181721,33181755..33181832,33181920..33182035, 33182462..33182576,33182844..33182945,33183893..33184168)) /locus_tag="TCM_025518" /product="Plasma membrane isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s07670.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s07670.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc264t4; inference alignment:Newbler:10:TSA:cgbaL_g11385t00001" CDS complement(join(33179381..33179458,33179934..33180034, 33180771..33180913,33181647..33181832,33181920..33182035, 33182462..33182576,33182844..33182945,33183893..33184014)) /locus_tag="TCM_025518" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Plasma membrane isoform 2" /protein_id="EOY10144.1" /db_xref="Phytozome:POPTR_0013s07670.1" /db_xref="TAIR:AT1G65020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5XF12" /translation="MWVEIICGLIVYRLFRRFFYDDDVLEVETSDSNAIFSVANRLEK LYGGKVYVGLHIPDADTGSRQNIDMVLVTKGEAAVISVKNLAGFVSISEDGSWACEGV GSHRAERHPDPVAEAKKQASVLESYLEQRGVALPEGYFSYKVVIPNPKFRTIYNTFPS EVITYDQWVQLKPEPKSMFSGWIKGAFRGGKKEMQESFHQQLNFILSTAPMWDRLELK GNKYVLGEFLEFKGKQEDTLALRNIKRSKVSRLIIQKTSMFGLAHSKLQVLYSPRDYR SEGASASEWKEVTVRSSTENIAGASWLAYAASAWILLIVMTTPY" CDS complement(join(33179853..33180034,33180771..33180913, 33181647..33181721,33181755..33181832,33181920..33182035, 33182462..33182576,33182844..33182945,33183893..33184014)) /locus_tag="TCM_025518" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Plasma membrane isoform 4" /protein_id="EOY10146.1" /db_xref="Phytozome:POPTR_0013s07670.1" /db_xref="TAIR:AT1G65020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5XF12" /translation="MWVEIICGLIVYRLFRRFFYDDDVLEVETSDSNAIFSVANRLEK LYGGKVYVGLHIPDADTGSRQNIDMVLVTKGEAAVISVKNLAGFVSISEDGSWACEGV GSHRAERHPDPVAEAKKQASVLESYLEQRGVALPEGYFSYKVVIPNPKFRTIYNTFPS EVITYDQWVQLKPEPKSIGKKEMQESFHQQLNFILSTAPMWDRLELKGNKYVLGEFLE FKGKQEDTLALRNIKRSKVSRLIIQKTSMFGLAHSKLQVLYSPRDYRSEGASASEWKE VTVRSSTEVIFQPQNSTKVRKFKLSSITSMSLSA" CDS complement(join(33179853..33180034,33180771..33180913, 33181647..33181832,33181920..33182035,33182462..33182576, 33182844..33182945,33183893..33184014)) /locus_tag="TCM_025518" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Plasma membrane isoform 1" /protein_id="EOY10143.1" /db_xref="Phytozome:POPTR_0013s07670.1" /db_xref="TAIR:AT1G65020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5XF12" /translation="MWVEIICGLIVYRLFRRFFYDDDVLEVETSDSNAIFSVANRLEK LYGGKVYVGLHIPDADTGSRQNIDMVLVTKGEAAVISVKNLAGFVSISEDGSWACEGV GSHRAERHPDPVAEAKKQASVLESYLEQRGVALPEGYFSYKVVIPNPKFRTIYNTFPS EVITYDQWVQLKPEPKSMFSGWIKGAFRGGKKEMQESFHQQLNFILSTAPMWDRLELK GNKYVLGEFLEFKGKQEDTLALRNIKRSKVSRLIIQKTSMFGLAHSKLQVLYSPRDYR SEGASASEWKEVTVRSSTEVIFQPQNSTKVRKFKLSSITSMSLSA" CDS complement(join(33179853..33180034,33180771..33180913, 33181647..33181832,33181920..33182035,33182462..33182576, 33182844..33182945,33183893..33184014)) /locus_tag="TCM_025518" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Plasma membrane isoform 1" /protein_id="EOY10145.1" /db_xref="Phytozome:POPTR_0013s07670.1" /db_xref="TAIR:AT1G65020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5XF12" /translation="MWVEIICGLIVYRLFRRFFYDDDVLEVETSDSNAIFSVANRLEK LYGGKVYVGLHIPDADTGSRQNIDMVLVTKGEAAVISVKNLAGFVSISEDGSWACEGV GSHRAERHPDPVAEAKKQASVLESYLEQRGVALPEGYFSYKVVIPNPKFRTIYNTFPS EVITYDQWVQLKPEPKSMFSGWIKGAFRGGKKEMQESFHQQLNFILSTAPMWDRLELK GNKYVLGEFLEFKGKQEDTLALRNIKRSKVSRLIIQKTSMFGLAHSKLQVLYSPRDYR SEGASASEWKEVTVRSSTEVIFQPQNSTKVRKFKLSSITSMSLSA" gene complement(33185578..33190723) /locus_tag="TCM_025519" /note="dbxref CacaoGD:Thecc1EG025519" mRNA complement(join(33185578..33188615,33189014..33189221, 33190168..33190723)) /locus_tag="TCM_025519" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s07200.1" /inference="similar to AA sequence:ricco:30073.m002293" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14495t1" mobile_element complement(33185837..33185927) /note="source:CACAO_M_S_E429291_F7_scaffold_89 1748 1838" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(33186306..33188615,33189014..33189221, 33190168..33190184)) /locus_tag="TCM_025519" /note="dbxref ricco:30073.m002293" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10147.1" /db_xref="TAIR:AT5G16730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I744" /translation="MSAKSKSALSETPSKASPATPRVASKVSRGLAKSEPDSPSPLQT TRHSVERSPRSSLNSKPTIDRRSPKVATPPEKPQTRVGKGSELQAQLNAVQEDLKKAK EQISLIEKEKAQAIDELKEAQKAAEEANEKLREALVAQKRAEESSEIEKFRAVELEQA GIEAAQKKDEEWEKEIESVRNQHALDVAALLSTTQELQRVKQELAMTCDAKNQALSHA DDATKIAEIHAEKVEILSAELVRLKSLLDSKRETEANENKEVLRLKAEIESLKQELEK AKTHEEKLMMEKEAFIEQLNVDLEAARMAESYAHNVVEEWKSRVEELEMQIEEAKKLE RSASESLDSVMKQLESNNYSLHDAESEIAALKEKVGLLEMTIGRQRGDLEESEHHIKL AKEETAEVAKLVESLKSDLETVKEEKTQALNNEKLAASSVQTLLEEKNKLINELENSR DEEEKSKKAMESLASALHEVSAEAREAKEKLLSSETEHENYETQIEDLRLVLKATNEK YETMLDDAKNGIDLLTNTIEQSKNEYQNSKTEWEQKELHLVNCVKESEEENSSLEKEI NRLVNLLKQTEEEACASKEEEAQLKESLKEVESEVIYLQEALKEVKTESMKLKESLLD KETELQGVIQENEELRAREAASLKKMEELSKLLEEATMKRQSEENGELTDSEKDYDLL PKVVEFSEENGHGSEEKPKLELPSEQPEEPKKENSLEVNDVSKDEALQTDGAKVENVN GKLKEDESKGKEDDSVEVEFKMWESCKIEKKEFSPEREPEQEFFEEEVESKVVGSEGF DQINGLTESIDDGGNSPSKQQQQKKKKPLLRKFGSLLKKKGSSNHK" mobile_element 33189633..33189692 /note="source:scaffold_5_CACTA_0596 1747 1806" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33195774..33195879 /note="source:scaffold_8_CACTA_0866 1093 1200" /mobile_element_type="transposon:TIR/CACTA" gene complement(33198509..33203344) /locus_tag="TCM_025521" /note="dbxref CacaoGD:Thecc1EG025521" mRNA complement(join(33198509..33198987,33203065..33203344)) /locus_tag="TCM_025521" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:TAIR:AT1G65000.1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400046003" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8388t3" CDS complement(join(33198864..33198987,33203065..33203213)) /locus_tag="TCM_025521" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10148.1" /db_xref="Phytozome:PGSC0003DMP400046003" /db_xref="TAIR:AT1G65000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GXU4" /translation="MEETKSDMEKEAEKICKRCKQSYTASSNTSASCRFHPSFFVCRR HDDQKRYYELRPDDPPYAAKFYDCCGAEDPEALGCITSFHVSYDDD" gene complement(33199736..33203356) /locus_tag="TCM_025522" /note="dbxref CacaoGD:Thecc1EG025522" mRNA complement(join(33199736..33201438,33201506..33202343, 33203065..33203356)) /locus_tag="TCM_025522" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is weak, protein is noncode_complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1511t4" mobile_element 33199948..33200017 /note="source:scaffold_5_CACTA_0596 1794 1866" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(33201423..33201438,33201506..33201801)) /locus_tag="TCM_025522" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10149.1" /translation="MSWEPVLLSFIILTITLASISIQIVGKLCALHKLNPLSIASNSA LRELWGPKCSEKPKGSSPVWSRATPLPVASWPYLELPSTFSFVSLNHGFIHLIICGGL E" gene complement(33203807..33208151) /locus_tag="TCM_025523" /note="dbxref CacaoGD:Thecc1EG025523" mRNA complement(join(33203807..33204144,33205307..33208151)) /locus_tag="TCM_025523" /product="Leucine-rich repeat containing protein, putative" /inference="alignment:exonerate- protein:2:ricco:29761.m000426" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025526t1" /inference="similar to AA sequence:ricco:29761.m000426" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8394t1" CDS complement(33205311..33207923) /locus_tag="TCM_025523" /note="dbxref ricco:29761.m000426; paralog of Thecc1EG025526t1" /codon_start=1 /product="Leucine-rich repeat containing protein, putative" /protein_id="EOY10150.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SUF5" /translation="MAESFAFNISENVLSKLANIAYQEIRLAWGVQSDLAKLKTTLTT IKAVLLDAEEKQAHDNQLRVWLQELRDACYDADDVLDEFEIEALRKQVVKQRSIGKKV SHFFSSSNPLAFRFKLAHKIKKVTERFVEIAALKNNFHLIERHDGPGHVVRLDRETHS FVQASEVIGRDEEKERFIKMLMQDPADEEDISVLPIVAIGGLGKTALAKLVFNDGRVD GHFGLTMWVCVSDDFDLKRLVLKIIKAGKEGDGDLGNMDLEQLQRVLRHCLNGKKYLL ILDDVWNEDNRKWQELKQLLVGGANGSKIVVTTRSNQVGKMVGTIPPHNLEGLPYDQS LSLFLKFAFKGGEEKRHPNLVKIGEEIVRKCKGVPLVVKTLGSLLFSKFSEGEWNRLK DSEMWELMEKENEIFSVLKLSYDQLPPHLKQCFAYCSLFPKDYGFDEVDTVQFWMAHG LIRPSKKNEDLEDIGRQYLNDLLSRCFFQDYEYGLDFIAFKMHDLLHDLALSVAKNEC CTINPSEQNIAQGVRHLCLTNCDSPEEGDFKLLNKVRHWRSFRCTDTNIGPSNKSFIE ACLKRFQHLRVLDFKRSNLEVLPKRIGDLKHLRYLDLTNNHSIKKLPNSICKLQNLQT LYLDGCDKLEELPRDMGYLTSLRALTITTKQKLLRGLECLKSLRYLFIQDCKNLEYLF EGIENLTSLQLLGISGCRNLISLPYGLKYLTALHTLVIGDCVKLDLNMTLGFKEKEDD NQDYLVGSSLCLLKLVILGPLPKLEALPQWLLQRSANTLKCLFIAECENLTTLSEWHN LTSLEKLEIMDCPKLSTLPEKMQRLKHLTIQECPVLSERCEPEGGEDWPNIAHVSRIY LDGDEVSSKQSSAP" mobile_element complement(33209958..33210404) /note="source:CACAO_Mariner_E220_scaffold_9 14739 15241" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene complement(33211180..33214399) /locus_tag="TCM_025524" /note="dbxref CacaoGD:Thecc1EG025524" mRNA complement(join(33211180..33211508,33211634..33211752, 33211861..33212020,33212097..33212135,33212801..33212894, 33213024..33213130,33213211..33214399)) /locus_tag="TCM_025524" /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g31950.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025533t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(33211444..33211508,33211634..33211752, 33211861..33212020,33212097..33212135,33212801..33212894, 33213024..33213130,33213211..33214195)) /locus_tag="TCM_025524" /note="paralog of Thecc1EG025533t1" /codon_start=1 /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /protein_id="EOY10151.1" /db_xref="TAIR:AT3G14470.1" /translation="MAETFAFNIVENDIEKLSSFSYEELRLAWGVQSGLQKLSKTLNI VKAVLLDAEEKQALNNQLRVWLQELKDACYDAEDVLDEFEVEALWRQALKQRSLGDKV SNFFSSSNPLAFRFRMAHKIKKVTERFGEIAALKNNFHLSESHDGSRYVVRLDRETHS FVQASDIIGRDEDKEKIIKTLLQDPTDGEDISVLPIVGIGGLGKTALAKLVFNDECVD RHFELKMWMCVSDDFDLRQLMIKFIKAEKGVLNGDCSNMDLKQLQKILRDCFDEKKYL LVLDDLWNEDHIKWDELKQLLVGGGWGSKIIVTTRSNQVAEIMGTIPTYKLQGKIGEE IAKKCKAVPLVLKILGSLLLSKRSEHDWKLDYEFYDGELIQFWIAHGLLQSSNDNEEP EDIGIENLTSLETLMIVVKNLILKETMIIKISPSGVCKAPFNYWQLEVYQSWRHYPNG FLWDQPTLCSTWVCRASELNIEHCPILNERCKRETGEDWTKIAHVSRIYLDGQSPSGG RWTKGLFRYLKDKS" gene complement(33214608..33241904) /locus_tag="TCM_025525" /note="dbxref CacaoGD:Thecc1EG025525" mRNA complement(join(33214608..33214917,33215035..33215125, 33215227..33215454,33215542..33215700,33240588..33241438, 33241565..33241573,33241712..33241904)) /locus_tag="TCM_025525" /product="Glycosyl hydrolases family 32 protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037304t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s24390.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1612t4" CDS complement(join(33215239..33215454,33215542..33215700, 33240588..33241438,33241565..33241573,33241712..33241838)) /locus_tag="TCM_025525" /note="paralog of Thecc1EG037304t1" /codon_start=1 /product="Glycosyl hydrolases family 32 protein, putative" /protein_id="EOY10152.1" /db_xref="Phytozome:POPTR_0006s24390.1" /db_xref="TAIR:AT3G13790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H3M9" /translation="MQISVIRFVAFCLALACVGAESSIEQPYRTAYHFQPPKNWMNDP NGPMFYKGVYHLFYQYNPYGPLWGNITWAHSVSYDLVNWLHLPHALSPTDPFDIKGCF SGSTTILSDGKPAILYTGVYANDSQVQNLALPANLTDPFLTEWVKSPLNPLIIPIDGI DPKNFRDPSTAWQGPDGIWRVIVGGHQNGQGKAILYQSKDFVNWIRSTNPLRSSAKTG MFECPDFYPVSINGNYGVDTSSQDKLTKHVLKASFNGNDYYILGSYTPQTDNFSAESD FLDGSFDFRYDYGKFYASKTFYDSSKKRRISWGWIAEMDGDANALEKGWSGLQSIPRS ILLSKTGKQLIQWPIKEIETLRAENVSIQEKQLKGGSVLEVLGVPASQADVEVAFDLT NLKKAEFMVPDGVDPRALGSQQTASFRGMVGPFGLLVLASQGLTEQTAVFVRIFKICC AHV" mobile_element complement(33215934..33216050) /note="source:INTACT495_F229_scaffold_2-int 4317 4436" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 33216049..33216148 /note="source:scaffold_1_CACTA_0016 2388 2486" /mobile_element_type="transposon:TIR/CACTA" gene complement(33216460..33227011) /locus_tag="TCM_025526" /note="dbxref CacaoGD:Thecc1EG025526" mRNA complement(join(33216460..33216610,33218111..33218480, 33219417..33222212,33222685..33223003,33226809..33227011)) /locus_tag="TCM_025526" /product="Leucine-rich repeat containing protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025523t1" /inference="similar to AA sequence:ricco:29761.m000426" /note="quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.26 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8405t1" CDS complement(33219421..33222033) /locus_tag="TCM_025526" /note="dbxref ricco:29761.m000426; paralog of Thecc1EG025523t1" /codon_start=1 /product="Leucine-rich repeat containing protein, putative" /protein_id="EOY10153.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SUF5" /translation="MVESFAFNIAENVLSKLANIAYQEIRLAWGVQSDLEKLKTTLTT IKAVLLDAEEKQAHDNQLRVWLQELRDACYDADDVLDEFEIEALRKQVVKQRSVGKKV SHFFSSSNPLAFRFKMGHKIKKVTESFVEIAALKNNFHLIERHDGPGHVVRLDRETHS FVQASEVIGRDEEKERIIKMLMQDPADEEDISVLPIVGIGGLGKTALAKLVFNDGRVD MHFGLKMWVCVSDDFDLKRLVLKIIKAGKEGDGDLGNMDLEQLQKVLRDCLKGNKYLL ILDDVWSEDNRKWQELKQLLVGGANGSKIVVTTRSNQVGKTVGTIPPHKLEGLPYDQS LSLFLKFAFKGGEEKQHPNLVKIGEEIVKKCKGVPLVVKTLGSLLFSKISEHEWKLVK DSETWELMEKENEIFSVLKLSYDQLPPHLKQCFAYCSLFPKDYGFNEFDTVQFWMAHG LIQTSKNNEDLEDIGRQYLNDLLSRCFFQDYEYGLDFIEFKMHDLLHDLALSVAKNEC CTINASKQNIVQGVRHLCLTNCDSPGESDFKLLNKVRHWRSFRCADTNIGPTNKSFIE ACLKRFQHLRVLDLEGSNLEVLPKRIGDLKHLRYLDLSNNHNIKKLPNSICKLQNLQT LYLDGCDKLEELPRDMGYLISLRAWTLTTNQKLLRGLECLKSLRYLCIRDCKNLEYLF EGIENLTSLQLLGIYGCRNLISLPNGLKYLTALHTLIIGDCAKLDLNTTVGLKEKEDD NQDYLVGSGLCLQTLGIVGPLPKLEALPQWLLQGSANTLKHLTIGGCENLTTSPEWKN LTLLEKLEIMDCPKLSTLPEKMQRLKKLWIKDCPVLSERCKPESGEDWPNIAHVSRIY LDGDEVSSKQSSAP" mobile_element complement(33224043..33225017) /note="source:CACAO_on_E683_scaffold_9 1347 2315" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 33225049..33225364 /note="source:INTACT639F_F363_scaffold_5-int 8237 8573" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 33225693..33225818 /note="source:CACAO_Mariner_E69_scaffold_2 1648 1764" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(33226172..33226874) /note="source:scaffold_5_CACTA_0615 1550 2253" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(33226874..33227903) /note="source:scaffold_5_CACTA_0607 4849 5928" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33227349..33228076 /note="source:scaffold_5_CACTA_0607 5903 6663" /mobile_element_type="transposon:TIR/CACTA" gene complement(33227729..33232502) /locus_tag="TCM_025527" /note="dbxref CacaoGD:Thecc1EG025527" mRNA complement(join(33227729..33227869,33228862..33229100, 33229628..33232502)) /locus_tag="TCM_025527" /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025526t1" /inference="similar to AA sequence:ricco:29761.m000426" /note="quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.25 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8415t1" mobile_element complement(33228078..33228158) /note="source:scaffold_5_CACTA_0580 5389 5465" /mobile_element_type="transposon:TIR/CACTA" CDS complement(33229632..33232244) /locus_tag="TCM_025527" /note="dbxref ricco:29761.m000426; paralog of Thecc1EG025526t1" /codon_start=1 /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /protein_id="EOY10154.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SUF5" /translation="MAESFAFNIAENVLSKLANIAYQEIRLARGVQSDLVKLKTTLTT IKAVLLDAEEKQAHDNQLRVWLQELRDACYDAEDVLDEFEIEALRKQVVKQRSIGKQV SHFFSSSNPLAFRFRMAHKVKKVTERFVEIAALKNNFHLIERHDGPGHVVRLDRETHS FVQASEVIGRDEEKERIIKMLMQDPADEEDISVLPIVGIGGLGKTALAKLVFNDGRID RHFGLKMWVCVSDDFDLKRLVLKIIKAGKEGDGDLGNMDLEQLQKVLRDCLKGNKYLL ILDDVWSEDNRKWQELKQLLVGGASGSKIVVTTRSNQVTKIVGTIPPQNLEGLPYDQS LSLFLKFAFKRGEEKQHPNLVKIGEDIVKKCKGVPLVVKTLGSLLFSKISEHEWRLVK DSEMWELMEKENEIFSVLKLSYDQLPPHLKQCFAHCSVYPKDYAFVEFELIQFWMAHG LLQSSKKNEDPEDIGRQYLNHLSSRCFFQDYQDKGFLIEFKMHDLLHDLALSVAKNEC STLNSFEQNIPQGVRHVYLDNCDSLEEKAFELLNKAGHVRTFMLPDVDTGPGNKSFME TCLKRFQHLRVLELSRSNLEILPKGIGNLKHLRFLYLCDNPNIKKLPNSICKLQNLQT LLFAGCYKIEELPREMRYLINLRFLSLTTKQRDLRGLEHLKSLRTLCIINCKNLEYLF EGIQNLTSLQTLCISRCRNLTSLPHGLKYLTALQTLSIRVCVKLDLNMTMGFEGKEED NQDYLVDSGLCLQRLGITGPLPNLEALPQWLLQGSANTLKQLDIERCENLTTTPEWKT LTSLERLWIFKCPKLSTLPEKMQRLKRLSIIECPILSERCKPETGEDWPSIAHVSRIC LDGAEISSKELSTP" mobile_element 33233537..33238998 /note="source:INTACT178_F162_scaffold_5-int 1 5462" /mobile_element_type="retrotransposon:LTR/Copia" gene 33234526..33239368 /locus_tag="TCM_025529" /note="dbxref CacaoGD:Thecc1EG025529" mRNA join(33234526..33235242,33235381..33235534, 33237219..33237760,33237854..33239368) /locus_tag="TCM_025529" /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /inference="alignment:exonerate- protein:2:frave:gene05934.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019818t1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.35 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc7796t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc8270t1" CDS join(33234546..33235242,33235381..33235534, 33237219..33237760,33237854..33238626) /locus_tag="TCM_025529" /note="paralog of Thecc1EG019818t1" /codon_start=1 /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /protein_id="EOY10155.1" /db_xref="TAIR:AT4G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B1E1" /translation="MDAYFIELKEVWEELRSFRLLPHCKYGKCNVNCFKVYSDQYQKD MVFRFLNGLNDSFSAVRSQIILMDPIPSLDRVYSLDLREEVQRTLMIQTQPPLESSAM LTTADMSKKGRKDLQCSHCGKKDHIKEKCYRLVGFPEDFKFTKCKSNFRKGKSMANSV TGLNDTQWQGTQSEQEDDSVGNGSMSQLSAIKLHVSKLMDLLSENGITSNDGRVSSPK DHQNKPSLMNSAFVDRFILAEPVNDHFVHLPNNGRAPVTHIGTVKISPILTLKNVLCV PSFNFNLLTKLNAKGEIERFKARLVAKEYSQVAGFDYQETFGSVAKQSIIRTFFALAA ARNWTLSQLDVNNAFLHGDLDEEVYMDIPKGYIVKREHPSGSKLVCKLHKSLYGLKQA LRQWNAKLTSCIIHYGFKQSMSDYSLFTMNTTDGEFIALLTYVDDILIGNTSTQVAAV VKEHLSSQFKLKDLEYGLLGAKPVSTPIDYNVKLAKASKEDELVDSFKYRQLVGKLLY LTFTRPDISYAVQTLSQFMDKPGRKHYMAASKVLKYLKAAPGQGILMKAESDLKISAY CDNDWAGCLDTRKFITGYCVFIGNSLVSWKCKKQQVVARSSTEAEYRSMATTCCEIIR IKGLLADFGIEQGAAVKLYCDNQSAIYISKNPVLHERTKHIEIDCHFIREKILSGVIK PVHISTDSQVTDAFTKALQPGQFKKLLCKMNIHNIHGCS" gene complement(33242480..33252471) /locus_tag="TCM_025530" /note="dbxref CacaoGD:Thecc1EG025530" mRNA complement(join(33242480..33242826,33243391..33243885, 33244483..33244712,33245030..33245980,33246578..33246695, 33247825..33247914,33248042..33248128,33251911..33252471)) /locus_tag="TCM_025530" /product="LRR and NB-ARC domains-containing disease resistance protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400016468" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025533t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.24 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8425t1" CDS complement(join(33243661..33243885,33244483..33244712, 33245030..33245980,33246578..33246695,33247825..33247914, 33248042..33248107)) /locus_tag="TCM_025530" /note="paralog of Thecc1EG025533t1" /codon_start=1 /product="LRR and NB-ARC domains-containing disease resistance protein" /protein_id="EOY10156.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SUF5" /translation="MGPDSRDGGNANALEKGWSGLQSIPRNILLSKTRKQLIQWPIKE IETLRAENVICDVKSKRKKMQAKSRFQSRQQTKQRNYNPAIKTRGKPERVIEKLATAA YQEISLAWGVQTDFQRLNDILTTVKDVLLDAEENQAHNNQLRNWLQKLKDACYDAEDV LDEFEIEAWRRQVLKQRNIVKKVRNFFSSSNPVAFRFRMAHKIKKVTERFGEIAALKA NFHLAERHYGTRHLMGLDRETHSFVQAADVIGRDQDKEKIINALMQDPTDGEHISVLP IVGIGGLGKTTLAKLVYNAECIDRHFELKKWICVADDFDLKQLMIKIIKAAKVFDGNW SSMDLDQLQKVFRDCLDEKKYLLVLDDLWNEDHIKWDELKQLLVGGAQGSKIVVTTRS SQVAEIMGTIPTHNLQDYEFNDVEVIHFWMAHDLLHSSNENEDSEDIGRRYLNNLSSR SFFQDFDQSLSIQSFKMHYLLHDLALSMAKNECSVGFEALTTLKVLIIVDCEKFHLNM TLGSEGRGKEVKSQDYHIGSRLHLQTLGVGGLPTTPMASCGICQHFAAPDT" gene complement(33249426..33250743) /locus_tag="TCM_025531" /note="dbxref CacaoGD:Thecc1EG025531" mRNA complement(join(33249426..33249772,33250365..33250743)) /locus_tag="TCM_025531" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025544t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(join(33249725..33249772,33250365..33250655)) /locus_tag="TCM_025531" /note="paralog of Thecc1EG025544t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10157.1" /translation="MVIIGGLPKLEVLPQWLLGGSANTLQLLALVECENLTTFPDRQN LTSLERLVIRDCPNLSSLPERMQCLKELNIGRCPILSEGYKPENGEDWAKISHGTSAF NGVGLAVVFM" mobile_element complement(33251404..33251508) /note="source:CACAO_Mutator_E592_scaffold_3 20489 20580" /mobile_element_type="transposon:TIR/Mutator" mobile_element 33251514..33251613 /note="source:CACAO_on_SS_E42_scaffold_2 24431 24534" /mobile_element_type="transposon:TIR/Mutator" gene 33252566..33259290 /locus_tag="TCM_025532" /note="dbxref CacaoGD:Thecc1EG025532" mRNA join(33252566..33252650,33255617..33259290) /locus_tag="TCM_025532" /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0012s01300.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025535t1" /inference="similar to AA sequence:ricco:29761.m000426" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.28 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc7473t5" mobile_element 33254553..33254692 /note="source:CACAO_Again_on_S_E308_scaffold_10 580 737" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(33254585..33254697) /note="source:CACAO_hAT_E386_scaffold_1 1 114" /mobile_element_type="transposon:TIR/hAT" CDS 33255766..33258474 /locus_tag="TCM_025532" /note="dbxref ricco:29761.m000426; paralog of Thecc1EG025535t1" /codon_start=1 /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /protein_id="EOY10158.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SUF5" /translation="MAETFAFNIVESLVQKLATVAYQETSLAWGVQSDFQRLNDILTT VKDVLLDAEEIQAHNNQLRNWLQNLKDACYDAEDVLDEFKIEALRKQVLRQRSIGKKV SHFFSSSNPLAFRFRMAQKIKKVTLRFGEIAALKANFHLAERHYDTRHVVMGLDRETH SFVQAADIIGRDEDKEKIIRALMQDPTDGENICVLPIVGIGGLGKTALAKLVLNDEII DGEFQLKMWVCVSDDFHLKRIIIKIIKAAKKINGDWSNMDLDQLQKVLRHSLDGKKYL LILDDLWNEDNIKWNELKQLLVGGGRGSKIVVTTRSSRVAEIMGTIPTHNLEGLPEKD ALSLFLQFAFKKREMNQYSNLVKIGEEIVKSCNGIPLVLKTLGSLLLGKTSEYDWKLV RDSEMWKVMQKENNVFPVLKLSYDQLPPYLKLCFAHLSVFPKDYEFNYMELIHFWMAH DLLQSSNENDDPIDIGCRYLNDLSSRSFFQDFDKSLSKQYFFKMHDLLHDLAVSMAKH ECSRINSFKQIITSGIRHLYLENSDFFKKNSCDFFDIYKLCHLRTFRFENMKADAKSE SFIKKCLSKFQKLRVLTLQGSSLEVVPKRISGLKHLRYLDLSSNSNIKKLPNFICKLL CLQTLLLIHAGIEELPSNMRYMISLKMLSISTKQKDLSKNGLEYLKSLRYLLFASCEN LEYLFDGIQNLTSLHTLIIVDCKNLIALPQGIKALTALKILVISNCEKLHLNMTLASK ARGKEDDSQDHHIGSGLRLQTLIIGWLPRLEALPNWLLGESANTLQILVIEECKNLTT LAEWQNLTSLERFSIEECPKLSSLPESMPCLRELSIMHCPSLNERCRPQTGEDWAKIA HVSNIRIDGSAGGYAVPQRNDYYALSHFKRKMGTRNRRELGQDCAA" gene complement(33260274..33273481) /locus_tag="TCM_025533" /note="dbxref CacaoGD:Thecc1EG025533" mRNA complement(join(33260274..33260665,33261252..33261987, 33262167..33262376,33262489..33264025,33270277..33270626, 33273383..33273481)) /locus_tag="TCM_025533" /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /inference="alignment:exonerate- protein:2:ricco:29761.m000426.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025536t1" /inference="similar to AA sequence:ricco:29761.m000426" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.32 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc773t11" CDS complement(join(33261272..33261987,33262167..33262376, 33262489..33263884)) /locus_tag="TCM_025533" /note="dbxref ricco:29761.m000426; paralog of Thecc1EG025536t1" /codon_start=1 /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /protein_id="EOY10159.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SUF5" /translation="MAETFAFNIVEKLIEKLATVAYQEISLAWGVQTDFQRLNDILTT VKDVLLDAEENQARNNQLRNWLQKLKDACYDAEDVLDEFQIEAWRRQVLKQRNIGKKV RNFFSSSNPVAFRFRMAHKIKKVTERFGEIAALKANFHLAERHYGTRHLVMGLDRETH SFVQAADIIGRDEDKKKIIKTLMQDPTDGEDVSVLPIVGIGGLGKTALAKLVYNDECV DRHFELKMWVCVSDDFDLKRLMIKIIKAAKGLDGNWSNMDLNQLQKVFRDCLNEKKYL LILDDLWNEDSIKWDELKQLLVQGAKGSKIIVTTRSNQVAEIIGTISTHNLQGLPEKE SLCLFLQFASEKGEINQYQNLVKIGEEIVKKCNGVPLVLKTLGSLLLSKTSEDHWEFV RDSEMWKLVQEEKSIFPVLKLSYDQLPPYLKPCFAYLSVFPKDYEFDRMGLIHFWMAH DLLHSFNENEDAEDIVAKNECSTVNCFKQIIAPGIRHLCLDNLDFLEEQSSGFLDVDK LCHLRTFRLENIKEGSNSESFIKNVFQGIEELPKNMRYMINLRMLAISTKQKSLSKYG LENLRSLRQLMIADCDNLEYLFDGIQNLKSLHALTITGCKNLISLPQGFEALIALKVL IIWECEKLHLNMTLGSEGRGKEDDSQDYHIGSRLRLQELAIRGVPKLEVLPQWLLVES ANTLRLLVLDECENLTKFQERQNLTSLEVLEITDCPNLSSLPERMQCLKRLDIESCPI LSERYKPENGEDWAKISHASSIFIDGNEITSNK" gene 33264126..33275605 /locus_tag="TCM_025534" /note="dbxref CacaoGD:Thecc1EG025534" mRNA join(33264126..33264163,33264705..33264932, 33267902..33268601,33275331..33275605) /locus_tag="TCM_025534" /product="Leucine-rich repeat containing protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025527t1" /inference="similar to AA sequence:ricco:29761.m000426" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(33264843..33264932,33267902..33268462) /locus_tag="TCM_025534" /note="dbxref ricco:29761.m000426; paralog of Thecc1EG025527t1" /codon_start=1 /product="Leucine-rich repeat containing protein, putative" /protein_id="EOY10160.1" /translation="MFRKIFRLRNYLDRREYYDALQVLHESIHKKFADLEKLKKTSTT INAVLLDAEEKQAHDHQPRVWLQESKDACYDEEESLDEFEIEALRKQVLKQRSIGNKV SHFFSSSNPLVFRFRMVHKMNKVTERFGEIAALKNNFHLSERHDGTGHVVRLDRETHF FVQASEIIGRESVLPIVGFGGLGETALAKLVSNEEIIDGLFQLKMWVYVSDDFNPI" mobile_element complement(33269732..33269923) /note="source:CACAO_Mariner_E38_scaffold_2 1891 2087" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 33271730..33275328 /note="source:CACAO_M_E12058_F3_scaffold_2 4603 8191" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 33275323..33275376 /note="source:CACAO_M_S_E14008_F3_scaffold_2 1579 1633" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(33280096..33280169) /note="source:CACAO_Again_on_E100_scaffold_4 4730 4804" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(33280183..33280345) /note="source:CACAO_Again_on_E100_scaffold_4 630 770" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(33280436..33280560) /note="source:CACAO_Again_on_E60_scaffold_2 3466 3590" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(33280560..33280916) /note="source:CACAO_Again_on_E100_scaffold_4 129 482" /mobile_element_type="transposon:TIR/hAT" gene 33282116..33287015 /locus_tag="TCM_025535" /note="dbxref CacaoGD:Thecc1EG025535" mRNA join(33282116..33285552,33286733..33287015) /locus_tag="TCM_025535" /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g31950.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025532t1" /inference="similar to AA sequence:ricco:29761.m000426" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete" CDS 33282711..33285419 /locus_tag="TCM_025535" /note="dbxref ricco:29761.m000426; paralog of Thecc1EG025532t1" /codon_start=1 /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /protein_id="EOY10161.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SUF5" /translation="MAETFAFNIVENVVQKLATVAHQEISLAWGVQSDFQRLNDILTT VKDVLLDAEENQAHTNQLRNWLQKLTDACYDAEDVLDEFEIEALRKQVLKQRNIGKKV SHFFSSSNPLAFRFRMAQKIKKVTLRFGEIAALKANFHLAERHYDTRHVVMGPDRETH SFVQAADIIGRDEDKEKIIKSLMQDPPDGENISVLPIVGIGGLGKTALAKLVLNDEII DGEFQLKIWVCVSDDFHLKRLIIKIIKAVKKVNEDWSNMDLDQLQKVLRDCLDGKKYL LILDDLWKEDDIKWNELKQLLVEGGRGSKIVVTTRSSRVAEITGTIPTHNLEGLPKEE ALSLFLQFAFKKREMNQYSNLVKIGEEIVKSCNGIPLVLKTLGSLLLCKTSEYDWKLV RDSEMWKLMQKENNIFPILKLSYDQLPPYLKQCFAYLSVFPKDYEFNYMELIHFWMAH DLLQSSNESDDPIDIGRRYLNDLSSRSFFQDFDKSLSRQYFFKMHDLLHDLAVLVAKN GCSTINSFKQIITPGIRHLCLENSDFLEKNSCDFFDIDKLCHLRTFRFENMKADANSE SFIEKCLSRFQKLRVLTLQGSSLEVVPKRISGLKHLRYLDLSGNTNIKKLPNFMCKLP CLQTLLLIQAGIEELPSNMRYMISLRMLSISTKQKVLSKSGLEYLKSLRYLLIAYCEN LEYLFDGIRNLTSLHSLIIVDCKNLIALPQGIKALTALKILVISNCEKLHLNMILASK ARGNEDDSQDHHIGSGLRLQTLIIGRLPRLEALPNWLLGESANTLQILVIEECKNLTT LAKWQNLTSLERFSIGECPKLSSLPESMPCLRELSIMHCPILNERCRPETGEDWAKIA HVSNIRIDGSAGGYAVPQRNDYYALSQFKRKMEARNRRGLGQDCAA" gene complement(33286992..33290871) /locus_tag="TCM_025536" /note="dbxref CacaoGD:Thecc1EG025536" mRNA complement(join(33286992..33287328,33287930..33289773, 33289885..33290871)) /locus_tag="TCM_025536" /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /inference="alignment:exonerate- protein:2:ricco:29761.m000426.5" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025535t1" /inference="similar to AA sequence:ricco:29761.m000426" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.35 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc818t16" CDS complement(join(33287950..33289773,33289885..33290640)) /locus_tag="TCM_025536" /note="dbxref ricco:29761.m000426; paralog of Thecc1EG025535t1" /codon_start=1 /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /protein_id="EOY10162.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SUF5" /translation="MSHKLSSPSASLFPFPPPSSPPQKFMAETFAFNIVEKLIEKLAT VAYQEISLAWGVQTDFQRLNDILTTVKDVLLDTEENVAQNNQQRNWLQKLKDACYGAE DVLDEFQIEALRKQVLKQRSIGKKVHSFFSSSNPVAFRFRMAHKIKKVTERFGEIAAL KANFHLAGRHYDTRYLVTGLDRETHSFVQAADIIGRDEDKEKIIKTLMQDPTDGEGIS VLPIVGIGGLGKTALAKLVYNDECVDRHFELKMWVFRDCLDEKKYLLILDDLWNEDHI KWDELKQLLVQGAKGSQIVVTTRSSQVAEIMSTISTHNLQGLPEKESLCLFLQFASKK GEINQHQNLVKIGEEIVKKCSGVPLVLKTLGSLLLSKTSEDDWEFVRDSEMWKLVQEE KSIFPVLKLSYDQLPPYLKPCFAYLSVFPKDYEFDQMALIHFWMAHDLLHSSNENEDA EDIGERYLNDLSSRSFFQDFAQSLSFQSFKMHDLLHDLALSVAKNECSTVNCFKQIIA PGIRHLCLDSLDFFEEQSSGFLDVDTLGHLRTFRLENMKEGSNSESFIKKCLSRFQNL RVLDLQGSSFEVLPKRVGRLKHLRYLDLNDNSKIKKLPNFVCKLPCLQTLLLYCEGIE ELPKNMRYMINLRMLVISTKQRSLSKNGFENLKSLRHLMIGNCKNLEYLFDGIQNLKS LHALIISGCKNLISMPQGFEALIALKVLVIWECEKLHLNMTLGSEGRGKEDDSQDYHI ASRLRLQELVIGGVPKLEVLPEWLLVESANTLRVLALGECENLTKFPERQNFTSLEGL GITDCPNLSSLPERMQCLKQLVIERCPILIERYNPENGEDWAKISHASRIRIDGNEIT SNK" gene 33293441..33297772 /locus_tag="TCM_025537" /note="dbxref CacaoGD:Thecc1EG025537" mRNA join(33293441..33294661,33295466..33296035, 33297470..33297772) /locus_tag="TCM_025537" /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008356001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025535t1" /inference="similar to AA sequence:Phytozome:POPTR_0012s01300.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.16 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc904t12" CDS join(33293479..33294661,33295466..33296035, 33297470..33297525) /locus_tag="TCM_025537" /note="paralog of Thecc1EG025535t1" /codon_start=1 /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /protein_id="EOY10163.1" /db_xref="Phytozome:POPTR_0012s01300.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SUF5" /translation="MAETFAFNIVENVVQKLATVAHQEISLAWGVQSDFQRLNDILTT VKDVLLDAEENQAHTNQLRNWLQKLTDACYDAVDVLDEFEIESLRRQVLKQRNIGKKV RYFFSSSNPLAFRFRMAQKIKKVTLRFGEIAALKANFHLAERHYDTRHVVMGPDRETH SFVQAADIIGRDEDREKIIKALMQDPPDGENISVLPIVGIGGLGKTALAKLVLNDEII DGEFQLKIWVCVSDDFHLKRLIIKIIKAVKKVNEDWSNMDLDQLQKVLRDCLDGKKYL LILDDLWKEDDIKWNELKQLLVEGGRGSKIVVTTRSSRVAEITGTIPTHNLEGLPKEE ALSLFLQFAFKKREMNQYSNLVKIGEEIVKSCNGIPLVLKTLGSLLLCKTSEYDWKLV RDRIEELPSNMRYMISLRMLSISTKQKVLSKSGLEYLKSLRYLFIAYCQNLEYLFDGI RNLTSLHSLIIVDCKNLIALPQGIKALTALKILVISNCEKLHLNMILASKARGNEDDS QDHHIGSGLRLQTLIIGWLPRLEALPNWLLGESANTLQILVIEECKNLTTLAEWQNLT SLERFSIGECPKLSSLPEKICILVELSGVSSSWSLT" gene complement(33298774..33310901) /locus_tag="TCM_025538" /note="dbxref CacaoGD:Thecc1EG025538" mRNA complement(join(33298774..33299196,33300175..33301263, 33301809..33302017,33306493..33306680,33306789..33307294, 33309442..33310901)) /locus_tag="TCM_025538" /product="LRR and NB-ARC domains-containing disease resistance protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s01960.1.5" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.22 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc783t40" CDS complement(join(33298799..33299196,33300175..33301263, 33301809..33302017,33306493..33306680,33306789..33307294, 33309442..33310768)) /locus_tag="TCM_025538" /codon_start=1 /product="LRR and NB-ARC domains-containing disease resistance protein" /protein_id="EOY10164.1" /db_xref="TAIR:AT3G14470.1" /translation="MADTFAFNIVEKVIEKLATAAYQEISLAWGVQTDFQRLNDILTT VKDVLLDAEENQAQNNQLRNWLQKLKDACYDAEDVLDEFQIEALRRQVLEQRNIEKKV RSFLSSSNPITFRFRMAHKIKKATERFGEIAALKANFHLAEIAERHYDTRHLVMGLDR KTHSFVQVADIIGRAEDKEKIIKTLMQDPTDGEDKSVLPIVGIGGLGKTALAKLVYND ERVDGHFKLKMWVCVSDDCDLKQLMIKIIKAAKGFDGNWSNMDLDQLQKVFRDCLDEK KYLLILDGLWNEDPIKCDELKQLLVQGAKGSKIVVTTRSNQVVEILGTISTHNLQGLP EKESLCLFLQFASKKGEINQYQNLVKIREEIVKKCNGVPLVLKTLGSLLLSKTSEDDW ELVRDSEIWKLVQEEKSIFPVLNLSYDHLPPYLKPCFAFLSVFPKDYEFNSLTIKPPY SSFSSHFSLPLSLSTYKLSDFSLQSSSIGFPLLTPASSPWLSTCRKSHAGELLRPASP TGGVAAVLDRLFLPATDLAASMVWFLLRRRAPPCGVGQVGSPPTGGVAAVLDRLFLPA TDRAASMVWFLLRRRTPPCGVGQVGSPPTGGGSGGTTVFSGRTPLVPPRNATVPPLLY TRFSGSGGGTPHCLVPGHPGASSTILPDANSSRLAGERGAWQGASAPCQSKDRYVFPI RWVLHQSFYDFFSVLISTDDIRCLHKRVGLPVRAHNNMPSVIMSFSEMKISFQSSNLT KSQDAEENQAKNNQLRNWLLKLKDACYDAEDVLDEFQIEAWRRQVLKQRNIGKKVRSF FSSSNPVAFRFRMAHKIKKVTGRFGQIAALKANFHLAERHYDTTHLVMGLDRETHSFV QAADIIGRDEDKEKIIKTLMQDPTDGEDVSVLPIVGIGGLGKTALAKLVYNDECVDRH FELKMWVCVSDDCDLKRLMIKIIKAAKGFDGNWSNMDLDQLQKVFRDCLDETKYLLIL DDLWNEDRIKWDELKQLLVQGAKGSKIVVTTRSNRVAEIMGTISTHNLRGLPEKESLC LFLQFASKKGEINQYRNLVKIAKEIVRKCNGVPLVLKTLGSLLLSKTSEDDWEFVRDS EMWKLVQEEKSIFPILKLRRGKEDDSQDYHIASRLRLQELVIGGVPKLEVLPEWLLVE SANTLRVLALGECENLTKFPERQNFTSLEGLGITDCPNLSSLPERMQCLKQLVIERCP ILIERYNPENGEDWAKISHASRIRIDGNEITSNK" mobile_element complement(33306401..33306745) /note="source:CACAO_M_E58877_F5_scaffold_9 20399 20738" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 33306675..33307441 /note="source:CACAO_M_E44210_F112_scaffold_5 10300 11077" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 33307542..33307822 /note="source:CACAO_M_E44210_F112_scaffold_5 11113 11394" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(33308766..33309391) /note="source:CACAO_M_E52694_F25_scaffold_8 2873 3499" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 33310876..33316556 /note="source:CACAO_M_E44150_F74_scaffold_5 1 5681" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 33310996..33323645 /locus_tag="TCM_025539" /note="dbxref CacaoGD:Thecc1EG025539" mRNA join(33310996..33311126,33319243..33321825, 33321920..33322114,33322927..33323645) /locus_tag="TCM_025539" /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s01960.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025535t1" /inference="similar to AA sequence:ricco:29761.m000426" /note="quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.20 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc904t11_G2" mobile_element complement(33318875..33318981) /note="source:CACAO_Again_on_E100_scaffold_4 3 131" /mobile_element_type="transposon:TIR/hAT" CDS join(33319392..33321825,33321920..33322114, 33322927..33323000) /locus_tag="TCM_025539" /note="dbxref ricco:29761.m000426; paralog of Thecc1EG025535t1" /codon_start=1 /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /protein_id="EOY10165.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SUF5" /translation="MAETFAFNILENVVQKLATVAHQEISLAWGVQSDFQRLNDILTT VKDVLLDAEENQAHTNQLRNWLQKLTDACYDAEDVLDEFEIEALRKQVLKQRNIGKKV SHFFSSSNPLAFRYRMAQKIKKVTLRFGEIAALKANFHLAERHYDTRHVVMGPDRETH SFVQAADIIGRDEDREKIIKALMQDPPDGENISVLPVVGIGGLGKTALAKLLLNDEII DGEFQLKIWVCVSDDFHLKRLIMKIIKAAKKVNEDWSNMDLDQLQKVLRDCLDGKKYL LILDDLWNEDDLKWNELKQFLVGGGRGSKIVVTTRSSRVAEIMGTIPTHNLEGLPEKE ALSLFLQFAFKKRETNQYSNLVKIGKEIVKSCTGIPLVLKTLGSLLLGKTSEYDWKLV RDSEMWTVMQKENNVFPVLKLSYDQLPPYLKLCFAHLSVFPKDYEFNYMELIHFWMAH DLLQSSNENDDPIDIGRRYLNDLSSRSFFQDFDKSLSRQYFFKMHDLLHDLAVLVAKN RCSTINSFKQIITPGIRHLCLENSDFLEKNSCDFFDIDKLCHLHTFRFENMKADANSE SFIEKCLSRFQKLRVLTLQGSSLEIVPKRISGLKHLRYLDLSGNSNIKKLPNFICKLL CLQTLLLIQAGIEELPSNMRYMISLRMLSISTKQKVLSKNGLEFLKSLRYLSIAHCEN LEYLFDGIRNLTSLHTLIICDCKNLIALPQGIKALTELKVLVISECEKLDLNMTLASE ARGKEDDSQDHHIGSGLRLQTLIIGWLPKLEALPNWLLGESANTLQILVIEECKNLTT SAEWQNLTSLERFNADQKQERIGTRLLTSRTYGLMALPEGMPCLKEMTIMHCPILNER WKPETEEDWAKIVQRNDSLRRRMYLHLLVRNWTGRLMVAAPFFT" gene complement(33323647..33326951) /locus_tag="TCM_025544" /note="dbxref CacaoGD:Thecc1EG025544" mRNA complement(join(33323647..33324007,33324602..33326395, 33326533..33326951)) /locus_tag="TCM_025544" /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025536t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.46 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc773t19" CDS complement(join(33324622..33326395,33326533..33326726)) /locus_tag="TCM_025544" /note="paralog of Thecc1EG025536t1" /codon_start=1 /product="LRR and NB-ARC domains-containing disease resistance protein, putative" /protein_id="EOY10166.1" /db_xref="TAIR:AT3G14460.1" /translation="MAETFAFNIVEKLIGKLATVAYQEISLAWGVQTDFQRLNDILTI VKDVLLDAEENQAKNNQLRNWSTLEDRIKWDELKQLLVQGAKGSKIVVTTRSNRVAEI MGTISTHNLRGLPEKESLCLFLQFASKKGEINQYRNLVKIAKEIVRKCNGVPLVLKTL GSLLLSKTSEDDWEFVRDSEMWKLVQEEKSIFPILKLSYDQLPPYLKPCFAYLSVFPK DYEFDCMELTHFWMAHDLLHSSNENEDAEDIAKRYLNDPSSRSIFQDFEQNIFFQSFK MHDLLHDLALLVAKNECSTVTCFKQIIGPGIRHLCLDNFDFLEEQSSGFLDVDKICHL RTFCLKNMKEGSNSESFIQKCLSRFQNLRVLDLEGSSFEVLPKKVGSLKHLRYLDLHG NSKIKKLPNFMCKLPCLQALYLGCEGIEELPKNMRYMINLRVLVISTKQRSLSKNGLE NLKSLRHLMIANCKNLEYLFDGIQNLRSLHVLIINGCKNLISLPQDFEALIALKVLVI LECEKLHLNMTLGSEGRGKEDDSQDYHIGSRLRLQELAVGGVPKLEVLLQWLLVESAN TLRFLALAECENLTKFPERQNLTSLERLWIKNCPNLSSLPERMQCLKELEIERCPILS ERYKPENGEDWAKIFHASRIRIDGNEITSNK" gene complement(33327179..33333261) /locus_tag="TCM_025545" /note="dbxref CacaoGD:Thecc1EG025545" mRNA complement(join(33327179..33327257,33328888..33329077, 33329160..33329465,33329535..33329708,33329876..33329988, 33330422..33330464,33330636..33333231)) /locus_tag="TCM_025545" /product="Leucine-rich repeat containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008359001.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025527t1" /inference="similar to AA sequence:ricco:29761.m000426" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc945t7_C1" mRNA complement(join(33328512..33328817,33328892..33329077, 33329160..33329225,33329299..33329465,33329535..33329708, 33329876..33329988,33330422..33330464,33330636..33333261)) /locus_tag="TCM_025545" /product="Leucine-rich repeat containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008359001.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025527t1" /inference="similar to AA sequence:ricco:29761.m000426" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc929t5; alternateUTRof:Thecc1EG025545t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc945t7_C1" mRNA complement(join(33328513..33328540,33328769..33328817, 33328892..33329077,33329160..33329225,33329299..33329465, 33329535..33329708,33329876..33329988,33330422..33330464, 33330636..33333261)) /locus_tag="TCM_025545" /product="Leucine-rich repeat containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008359001.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025527t1" /inference="similar to AA sequence:ricco:29761.m000426" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc945t4; alternateUTRof:Thecc1EG025545t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc945t7_C1" mRNA complement(join(33328513..33328540,33328888..33329077, 33329160..33329225,33329299..33329465,33329535..33329708, 33329876..33329988,33330422..33330464,33330636..33333261)) /locus_tag="TCM_025545" /product="Leucine-rich repeat containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008359001.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025527t1" /inference="similar to AA sequence:ricco:29761.m000426" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc945t1; alternateUTRof:Thecc1EG025545t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc945t7_C1" mRNA complement(join(33328513..33328540,33328769..33329077, 33329160..33329225,33329299..33329465,33329535..33329708, 33329876..33329988,33330422..33330464,33330636..33333261)) /locus_tag="TCM_025545" /product="Leucine-rich repeat containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008359001.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025527t1" /inference="similar to AA sequence:ricco:29761.m000426" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc945t5; alternateUTRof:Thecc1EG025545t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc945t7_C1" mRNA complement(join(33329627..33329654,33329876..33329988, 33330422..33330464,33330636..33333261)) /locus_tag="TCM_025545" /product="Leucine-rich repeat containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01008359001.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025527t1" /inference="similar to AA sequence:ricco:29761.m000426" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc945t3; alternateUTRof:Thecc1EG025545t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc945t7_C1" CDS complement(join(33329936..33329988,33330422..33330464, 33330636..33333185)) /locus_tag="TCM_025545" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29761.m000426; paralog of Thecc1EG025527t1" /codon_start=1 /product="Leucine-rich repeat containing protein, putative isoform 1" /protein_id="EOY10167.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SUF5" /translation="MAEPFAFNIAENVLETLTALVVQEISLACGVQSDFRKLREMLAT VKPWILDAEEKQARNNQLQDWVQKLKDACYDAEDVLDEFEVESLRGQVLEQKCIGNKV CNFFSSSNPLVFRLKMAHKIKKITERFSEIADLRDRFHLVEKHDDTMHVVLSDRETHS FVQASDVIGRDIDKKKIVESLLQAPTGGEEENISVLTIVGIGGLGKTALAKLVFNDVN VAEFFQLKMWVCVSNETDLKRLLEKVIKVANGGDRDYGNMSLEKLQKGLRGCLNGKTY LLILDDVCWVDDKPWSKLKPLLMGGAKGSKILVTARSNLVASNMGTIHNLKALPEEES FSLFLKVAFRKGGKEQHPHLVQIGREIVKKCGGNPLAVKTLASLLYSTTSKHEWEKVR DNEMWKLMQDKNDLLPVLKLSYDQLPHYLKPCFVYCSVYPKDYRFASFELVQFWMAHG LLKTSNPDEDPEETGRRYLNELSSRYFFQDFETLGFIQHFKMHDLLHDLALLIAKNEC SVVKSQGQDVGEGVRHLYFLDLDIPAESFSRYLDNCCHVRTFRFLYIKEGSRNDFFIQ TFLSRFQRLRVLDLSESTFEVLPRGIGNLKHLRFLDLRGNRNIKKLPNSICKLQNLQT LILASCNGIEEFPKDMSQLIMLRALSITTNLTVLPENVVNRLKSLRHLAIGHCENLEH LPEGVRNLTQLRTLVIGMCKNLISLPHGLNCLTNLENLAILHCERLELEGKEDNSQEQ HIAQGLRLRRLLLGGLPKLKTLPKWLLIQGSGSHTLSLEMLEIFGCLELASLPEVMQC LTALVELKIEYCPLLSERCRRKTGEDWPKIAHVPYIYLDGNEIGSNRYHKTEGDHRGN QSRSSTTTVISTNISLENDWKKEER" CDS complement(join(33329936..33329988,33330422..33330464, 33330636..33333185)) /locus_tag="TCM_025545" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29761.m000426; paralog of Thecc1EG025527t1" /codon_start=1 /product="Leucine-rich repeat containing protein, putative isoform 1" /protein_id="EOY10168.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SUF5" /translation="MAEPFAFNIAENVLETLTALVVQEISLACGVQSDFRKLREMLAT VKPWILDAEEKQARNNQLQDWVQKLKDACYDAEDVLDEFEVESLRGQVLEQKCIGNKV CNFFSSSNPLVFRLKMAHKIKKITERFSEIADLRDRFHLVEKHDDTMHVVLSDRETHS FVQASDVIGRDIDKKKIVESLLQAPTGGEEENISVLTIVGIGGLGKTALAKLVFNDVN VAEFFQLKMWVCVSNETDLKRLLEKVIKVANGGDRDYGNMSLEKLQKGLRGCLNGKTY LLILDDVCWVDDKPWSKLKPLLMGGAKGSKILVTARSNLVASNMGTIHNLKALPEEES FSLFLKVAFRKGGKEQHPHLVQIGREIVKKCGGNPLAVKTLASLLYSTTSKHEWEKVR DNEMWKLMQDKNDLLPVLKLSYDQLPHYLKPCFVYCSVYPKDYRFASFELVQFWMAHG LLKTSNPDEDPEETGRRYLNELSSRYFFQDFETLGFIQHFKMHDLLHDLALLIAKNEC SVVKSQGQDVGEGVRHLYFLDLDIPAESFSRYLDNCCHVRTFRFLYIKEGSRNDFFIQ TFLSRFQRLRVLDLSESTFEVLPRGIGNLKHLRFLDLRGNRNIKKLPNSICKLQNLQT LILASCNGIEEFPKDMSQLIMLRALSITTNLTVLPENVVNRLKSLRHLAIGHCENLEH LPEGVRNLTQLRTLVIGMCKNLISLPHGLNCLTNLENLAILHCERLELEGKEDNSQEQ HIAQGLRLRRLLLGGLPKLKTLPKWLLIQGSGSHTLSLEMLEIFGCLELASLPEVMQC LTALVELKIEYCPLLSERCRRKTGEDWPKIAHVPYIYLDGNEIGSNRYHKTEGDHRGN QSRSSTTTVISTNISLENDWKKEER" CDS complement(join(33329936..33329988,33330422..33330464, 33330636..33333185)) /locus_tag="TCM_025545" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29761.m000426; paralog of Thecc1EG025527t1" /codon_start=1 /product="Leucine-rich repeat containing protein, putative isoform 1" /protein_id="EOY10169.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SUF5" /translation="MAEPFAFNIAENVLETLTALVVQEISLACGVQSDFRKLREMLAT VKPWILDAEEKQARNNQLQDWVQKLKDACYDAEDVLDEFEVESLRGQVLEQKCIGNKV CNFFSSSNPLVFRLKMAHKIKKITERFSEIADLRDRFHLVEKHDDTMHVVLSDRETHS FVQASDVIGRDIDKKKIVESLLQAPTGGEEENISVLTIVGIGGLGKTALAKLVFNDVN VAEFFQLKMWVCVSNETDLKRLLEKVIKVANGGDRDYGNMSLEKLQKGLRGCLNGKTY LLILDDVCWVDDKPWSKLKPLLMGGAKGSKILVTARSNLVASNMGTIHNLKALPEEES FSLFLKVAFRKGGKEQHPHLVQIGREIVKKCGGNPLAVKTLASLLYSTTSKHEWEKVR DNEMWKLMQDKNDLLPVLKLSYDQLPHYLKPCFVYCSVYPKDYRFASFELVQFWMAHG LLKTSNPDEDPEETGRRYLNELSSRYFFQDFETLGFIQHFKMHDLLHDLALLIAKNEC SVVKSQGQDVGEGVRHLYFLDLDIPAESFSRYLDNCCHVRTFRFLYIKEGSRNDFFIQ TFLSRFQRLRVLDLSESTFEVLPRGIGNLKHLRFLDLRGNRNIKKLPNSICKLQNLQT LILASCNGIEEFPKDMSQLIMLRALSITTNLTVLPENVVNRLKSLRHLAIGHCENLEH LPEGVRNLTQLRTLVIGMCKNLISLPHGLNCLTNLENLAILHCERLELEGKEDNSQEQ HIAQGLRLRRLLLGGLPKLKTLPKWLLIQGSGSHTLSLEMLEIFGCLELASLPEVMQC LTALVELKIEYCPLLSERCRRKTGEDWPKIAHVPYIYLDGNEIGSNRYHKTEGDHRGN QSRSSTTTVISTNISLENDWKKEER" CDS complement(join(33329936..33329988,33330422..33330464, 33330636..33333185)) /locus_tag="TCM_025545" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29761.m000426; paralog of Thecc1EG025527t1" /codon_start=1 /product="Leucine-rich repeat containing protein, putative isoform 1" /protein_id="EOY10170.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SUF5" /translation="MAEPFAFNIAENVLETLTALVVQEISLACGVQSDFRKLREMLAT VKPWILDAEEKQARNNQLQDWVQKLKDACYDAEDVLDEFEVESLRGQVLEQKCIGNKV CNFFSSSNPLVFRLKMAHKIKKITERFSEIADLRDRFHLVEKHDDTMHVVLSDRETHS FVQASDVIGRDIDKKKIVESLLQAPTGGEEENISVLTIVGIGGLGKTALAKLVFNDVN VAEFFQLKMWVCVSNETDLKRLLEKVIKVANGGDRDYGNMSLEKLQKGLRGCLNGKTY LLILDDVCWVDDKPWSKLKPLLMGGAKGSKILVTARSNLVASNMGTIHNLKALPEEES FSLFLKVAFRKGGKEQHPHLVQIGREIVKKCGGNPLAVKTLASLLYSTTSKHEWEKVR DNEMWKLMQDKNDLLPVLKLSYDQLPHYLKPCFVYCSVYPKDYRFASFELVQFWMAHG LLKTSNPDEDPEETGRRYLNELSSRYFFQDFETLGFIQHFKMHDLLHDLALLIAKNEC SVVKSQGQDVGEGVRHLYFLDLDIPAESFSRYLDNCCHVRTFRFLYIKEGSRNDFFIQ TFLSRFQRLRVLDLSESTFEVLPRGIGNLKHLRFLDLRGNRNIKKLPNSICKLQNLQT LILASCNGIEEFPKDMSQLIMLRALSITTNLTVLPENVVNRLKSLRHLAIGHCENLEH LPEGVRNLTQLRTLVIGMCKNLISLPHGLNCLTNLENLAILHCERLELEGKEDNSQEQ HIAQGLRLRRLLLGGLPKLKTLPKWLLIQGSGSHTLSLEMLEIFGCLELASLPEVMQC LTALVELKIEYCPLLSERCRRKTGEDWPKIAHVPYIYLDGNEIGSNRYHKTEGDHRGN QSRSSTTTVISTNISLENDWKKEER" CDS complement(join(33329936..33329988,33330422..33330464, 33330636..33333185)) /locus_tag="TCM_025545" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:29761.m000426; paralog of Thecc1EG025527t1" /codon_start=1 /product="Leucine-rich repeat containing protein, putative isoform 1" /protein_id="EOY10171.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SUF5" /translation="MAEPFAFNIAENVLETLTALVVQEISLACGVQSDFRKLREMLAT VKPWILDAEEKQARNNQLQDWVQKLKDACYDAEDVLDEFEVESLRGQVLEQKCIGNKV CNFFSSSNPLVFRLKMAHKIKKITERFSEIADLRDRFHLVEKHDDTMHVVLSDRETHS FVQASDVIGRDIDKKKIVESLLQAPTGGEEENISVLTIVGIGGLGKTALAKLVFNDVN VAEFFQLKMWVCVSNETDLKRLLEKVIKVANGGDRDYGNMSLEKLQKGLRGCLNGKTY LLILDDVCWVDDKPWSKLKPLLMGGAKGSKILVTARSNLVASNMGTIHNLKALPEEES FSLFLKVAFRKGGKEQHPHLVQIGREIVKKCGGNPLAVKTLASLLYSTTSKHEWEKVR DNEMWKLMQDKNDLLPVLKLSYDQLPHYLKPCFVYCSVYPKDYRFASFELVQFWMAHG LLKTSNPDEDPEETGRRYLNELSSRYFFQDFETLGFIQHFKMHDLLHDLALLIAKNEC SVVKSQGQDVGEGVRHLYFLDLDIPAESFSRYLDNCCHVRTFRFLYIKEGSRNDFFIQ TFLSRFQRLRVLDLSESTFEVLPRGIGNLKHLRFLDLRGNRNIKKLPNSICKLQNLQT LILASCNGIEEFPKDMSQLIMLRALSITTNLTVLPENVVNRLKSLRHLAIGHCENLEH LPEGVRNLTQLRTLVIGMCKNLISLPHGLNCLTNLENLAILHCERLELEGKEDNSQEQ HIAQGLRLRRLLLGGLPKLKTLPKWLLIQGSGSHTLSLEMLEIFGCLELASLPEVMQC LTALVELKIEYCPLLSERCRRKTGEDWPKIAHVPYIYLDGNEIGSNRYHKTEGDHRGN QSRSSTTTVISTNISLENDWKKEER" CDS complement(join(33329936..33329988,33330422..33330464, 33330636..33333185)) /locus_tag="TCM_025545" /note="encoded by transcript variant 6; alternatively spliced; dbxref ricco:29761.m000426; paralog of Thecc1EG025527t1" /codon_start=1 /product="Leucine-rich repeat containing protein, putative isoform 1" /protein_id="EOY10172.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SUF5" /translation="MAEPFAFNIAENVLETLTALVVQEISLACGVQSDFRKLREMLAT VKPWILDAEEKQARNNQLQDWVQKLKDACYDAEDVLDEFEVESLRGQVLEQKCIGNKV CNFFSSSNPLVFRLKMAHKIKKITERFSEIADLRDRFHLVEKHDDTMHVVLSDRETHS FVQASDVIGRDIDKKKIVESLLQAPTGGEEENISVLTIVGIGGLGKTALAKLVFNDVN VAEFFQLKMWVCVSNETDLKRLLEKVIKVANGGDRDYGNMSLEKLQKGLRGCLNGKTY LLILDDVCWVDDKPWSKLKPLLMGGAKGSKILVTARSNLVASNMGTIHNLKALPEEES FSLFLKVAFRKGGKEQHPHLVQIGREIVKKCGGNPLAVKTLASLLYSTTSKHEWEKVR DNEMWKLMQDKNDLLPVLKLSYDQLPHYLKPCFVYCSVYPKDYRFASFELVQFWMAHG LLKTSNPDEDPEETGRRYLNELSSRYFFQDFETLGFIQHFKMHDLLHDLALLIAKNEC SVVKSQGQDVGEGVRHLYFLDLDIPAESFSRYLDNCCHVRTFRFLYIKEGSRNDFFIQ TFLSRFQRLRVLDLSESTFEVLPRGIGNLKHLRFLDLRGNRNIKKLPNSICKLQNLQT LILASCNGIEEFPKDMSQLIMLRALSITTNLTVLPENVVNRLKSLRHLAIGHCENLEH LPEGVRNLTQLRTLVIGMCKNLISLPHGLNCLTNLENLAILHCERLELEGKEDNSQEQ HIAQGLRLRRLLLGGLPKLKTLPKWLLIQGSGSHTLSLEMLEIFGCLELASLPEVMQC LTALVELKIEYCPLLSERCRRKTGEDWPKIAHVPYIYLDGNEIGSNRYHKTEGDHRGN QSRSSTTTVISTNISLENDWKKEER" gene complement(33333830..33340681) /locus_tag="TCM_025546" /note="dbxref CacaoGD:Thecc1EG025546" mRNA complement(join(33333830..33334436,33335146..33335325, 33336014..33336139,33336539..33336664,33336775..33336936, 33337186..33337303,33337441..33337506,33338311..33338383, 33338460..33338562,33338784..33338909,33339601..33339676, 33340206..33340381)) /locus_tag="TCM_025546" /product="Vacuolar ATP synthase subunit H family protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene12559" /inference="similar to AA sequence:frave:gene12559" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8380t1; inference alignment:Newbler:10:TSA:cgbaP2_g05176t00001" mRNA complement(join(33333848..33334436,33335146..33335325, 33336014..33336139,33336539..33336664,33336775..33336936, 33337186..33337303,33337441..33337506,33337589..33337610, 33338312..33338383,33338460..33338562,33338784..33338909, 33339604..33339676,33340206..33340681)) /locus_tag="TCM_025546" /product="Vacuolar ATP synthase subunit H family protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene12559" /inference="similar to AA sequence:Phytozome:GSVIVT01024344001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05176t00001" CDS complement(join(33334188..33334436,33335146..33335325, 33336014..33336139,33336539..33336664,33336775..33336936, 33337186..33337303,33337441..33337506,33337589..33337610, 33338312..33338383,33338460..33338562,33338784..33338909, 33339604..33339633)) /locus_tag="TCM_025546" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Vacuolar ATP synthase subunit H family protein isoform 1" /protein_id="EOY10173.1" /db_xref="Phytozome:GSVIVT01024344001" /db_xref="TAIR:AT3G42050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LX65" /translation="MDHAELNTEQVLKRDIPWETYMTTKLISGTGLQLLRRYDNRAES YRAQLLDDDGPAYVRVFVSILRDIFKEETVEYVLALIDEMLTANPKRARLFHDKSLAN EDTYEPFLKSEEYKHVLLWKGNWFIQEKSCKILALIVSARPKTQDGVVANGEASNSKK KFTTIDDVLKGLVEWLCTQLRKPSHPSRGIPTAINCLASLLKEPVVRSSFVQADGVKL LIPLISPASTQQSIQLLYETCLCLWLLSYYEPALEYLATSRTLPRLVDVVKSSTKEKV VRVIILTFRNLLSKGTFGAQMVDLGLPQIVQSLKAQAWSDEDLLEALNQLEDGLKDNI KKLSSFDKYKQEVLLGHLDWSPMHKDPLFWRDNITCFEENDFQILRVLITIMDSSNDS RALAVACFDLSQFIQHHPAGRVIVTDLKAKERVMKLMNHESAEVTKNALLCIQRLFLG AKYASFLQV" CDS complement(join(33334188..33334436,33335146..33335325, 33336014..33336139,33336539..33336664,33336775..33336936, 33337186..33337303,33337441..33337506,33338311..33338383, 33338460..33338562,33338784..33338909,33339601..33339633)) /locus_tag="TCM_025546" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene12559" /codon_start=1 /product="Vacuolar ATP synthase subunit H family protein isoform 2" /protein_id="EOY10174.1" /db_xref="TAIR:AT3G42050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LX65" /translation="MDHAELNTEQVVLKRDIPWETYMTTKLISGTGLQLLRRYDNRAE SYRAQLLDDDGPAYVRVFVSILRDIFKEETVEYVLALIDEMLTANPKRARLFHDKSLA NEDTYEPFLRLLWKGNWFIQEKSCKILALIVSARPKTQDGVVANGEASNSKKKFTTID DVLKGLVEWLCTQLRKPSHPSRGIPTAINCLASLLKEPVVRSSFVQADGVKLLIPLIS PASTQQSIQLLYETCLCLWLLSYYEPALEYLATSRTLPRLVDVVKSSTKEKVVRVIIL TFRNLLSKGTFGAQMVDLGLPQIVQSLKAQAWSDEDLLEALNQLEDGLKDNIKKLSSF DKYKQEVLLGHLDWSPMHKDPLFWRDNITCFEENDFQILRVLITIMDSSNDSRALAVA CFDLSQFIQHHPAGRVIVTDLKAKERVMKLMNHESAEVTKNALLCIQRLFLGAKYASF LQV" mRNA complement(join(<33335218..33335325,33336014..33336139, 33336539..33336664,33336775..33336936,33337186..33337303, 33337441..33337508,33338313..33338383,33338460..33338562, 33338784..33338909,33339551..33339676,33340070..33340413)) /locus_tag="TCM_025546" /product="Vacuolar ATP synthase subunit H family protein isoform 3" /inference="alignment:exonerate-protein:2:frave:gene12559" /inference="similar to AA sequence:Phytozome:POPTR_0013s07630.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc299t8; inference alignment:Newbler:10:TSA:cgbaP2_g05176t00001" CDS complement(join(<33335218..33335325,33336014..33336139, 33336539..33336664,33336775..33336936,33337186..33337303, 33337441..33337508,33338313..33338383,33338460..33338562, 33338784..33338876)) /locus_tag="TCM_025546" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Vacuolar ATP synthase subunit H family protein isoform 3" /protein_id="EOY10175.1" /db_xref="Phytozome:POPTR_0013s07630.1" /db_xref="TAIR:AT3G42050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LX65" /translation="MTTKLISGTGLQLLRRYDNRAESYRAQLLDDDGPAYVRVFVSIL RDIFKEETVEYVLALIDEMLTANPKRARLFHDKSLANEDTYEPFLRLLWKGNWFIQEK SCKILALIVSARPKTQDGVVANGEASNSKKKFTTIDDVLKGLVEWLCTQLRKPSHPSR GIPTAINCLASLLKEPVVRSSFVQADGVKLLIPLISPASTQQSIQLLYETCLCLWLLS YYEPALEYLATSRTLPRLVDVVKSSTKEKVVRVIILTFRNLLSKGTFGAQMVDLGLPQ IVQSLKAQAWSDEDLLEALNQLEDGLKDNIKKLSSFDKYKQEVLLGHLD" gene 33341918..33360937 /locus_tag="TCM_025547" /note="dbxref CacaoGD:Thecc1EG025547" mRNA join(33341918..33342570,33343592..33343854, 33351721..33351838,33353074..33353282,33354169..33355106, 33360555..33360937) /locus_tag="TCM_025547" /product="PfkB-like carbohydrate kinase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024341001" /inference="similar to AA sequence:ricco:30073.m002297" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06299t00001" CDS join(33342163..33342570,33343592..33343854, 33351721..33351838,33353074..33353282,33354169..33354622) /locus_tag="TCM_025547" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30073.m002297" /codon_start=1 /product="PfkB-like carbohydrate kinase family protein isoform 1" /protein_id="EOY10176.1" /db_xref="TAIR:AT4G27600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S254" /translation="MSFSFVNSISSPPQTNSLFCSPFFSLYHLHSYSFSSLYHRKESY ANGRIMRASRFLGDGKGNESVNFGSMGKKKSGLFWVSSRCSSRRSSSCSSSKEEEFES EGEEEEEEDEDEENAGSFCVLPDRWDVLGLGQAMVDFSGMVDDEFLERLELEKGTRKV VNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGSKPIGGPMLNVAMAGSIGSDP LGGFYRAKLHRANVNFLSEPIKDGTTGTVIVLTTPDAQRTMLAYQGTSSTINYDSCLA GAVSKTNIFVVEGYLFELPDTIKTILKACEEARQSGALVAVTASDISCIERHYDDFWE IVGNYADIVFANSDEAGALCHFSSKESPISATRYLSHFVPLVSVTDGPRGSYIGVKGE AVYIPPSPCVPVDTCGAGDAYASGILYGILRGVSDLKGMGTLAARIAATVVGQLGTRL RVQDAVDLSESFAFNLASSTVRTDVDSDHISSL" mRNA join(33342167..33342570,33343592..33343854, 33351721..33351838,33353194..33353282,33354169..33354809) /locus_tag="TCM_025547" /product="Ribokinase, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024341001" /inference="similar to AA sequence:ricco:30073.m002297" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc855t5; inference alignment:Newbler:10:TSA:cgbaB_g06299t00001" CDS join(33342310..33342570,33343592..33343854, 33351721..33351838,33353194..33353282,33354169..33354622) /locus_tag="TCM_025547" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30073.m002297" /codon_start=1 /product="Ribokinase, putative isoform 2" /protein_id="EOY10177.1" /db_xref="TAIR:AT4G27600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S254" /translation="MRASRFLGDGKGNESVNFGSMGKKKSGLFWVSSRCSSRRSSSCS SSKEEEFESEGEEEEEEDEDEENAGSFCVLPDRWDVLGLGQAMVDFSGMVDDEFLERL ELEKGTRKVVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGSKPIGGPMLNVA MAGSIGSDPLGGFYRAKLHRANVNFLSEPIKDGTTGTVIVLTTPDAQRTMLAYQACEE ARQSGALVAVTASDISCIERHYDDFWEIVGNYADIVFANSDEAGALCHFSSKESPISA TRYLSHFVPLVSVTDGPRGSYIGVKGEAVYIPPSPCVPVDTCGAGDAYASGILYGILR GVSDLKGMGTLAARIAATVVGQLGTRLRVQDAVDLSESFAFNLASSTVRTDVDSDHIS SL" mobile_element 33357674..33358698 /note="source:CACAO_on_S_E46_scaffold_2 381 1426" /mobile_element_type="transposon:TIR/Mutator" gene complement(33365305..33367602) /locus_tag="TCM_025548" /note="dbxref CacaoGD:Thecc1EG025548" mRNA complement(join(33365305..33366230,33366370..33366585, 33366966..33367175,33367357..33367602)) /locus_tag="TCM_025548" /product="PLATZ transcription factor family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s07610.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015701t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s07610.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g08184t00001" mRNA complement(join(33365801..33366230,33366370..33366585, 33366966..33367171,33367357..33367602)) /locus_tag="TCM_025548" /product="PLATZ transcription factor family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s07610.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015701t2" /inference="similar to AA sequence:ricco:30073.m002298" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc113t15; inference alignment:Newbler:10:TSA:cgbaP1_g08184t00001" CDS complement(join(33366003..33366230,33366370..33366585, 33366966..33367175,33367357..33367419)) /locus_tag="TCM_025548" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG015701t1" /codon_start=1 /product="PLATZ transcription factor family protein isoform 1" /protein_id="EOY10178.1" /db_xref="Phytozome:POPTR_0013s07610.1" /db_xref="TAIR:AT4G17900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0DYH6" /translation="MINIDQETTVREIKPKSRRIMGGGGPNDDDDKEDVKWPPWLRPL LQTSFFVQCKLHADAHKSECNMYCLDCMNGALCSLCLAYHKEHRAIQIRRSSYHDVIR VSEIQKFLDITGIQTYIINSARIVFLNERPQPRPGKGVTNTCQVCERSLLDSFSFCSL GCKIVGTSKNFIRKKKMCKETDGSDAESLSGVNSGSRKSKIQSFTPSTPPPTAVNYRT AKRRKGVPHRAPMGGLIIEY" CDS complement(join(33366003..33366230,33366370..33366585, 33366966..33367043)) /locus_tag="TCM_025548" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30073.m002298; paralog of Thecc1EG015701t2" /codon_start=1 /product="PLATZ transcription factor family protein isoform 2" /protein_id="EOY10179.1" /db_xref="TAIR:AT1G32700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0DYH6" /translation="MYCLDCMNGALCSLCLAYHKEHRAIQIRRSSYHDVIRVSEIQKF LDITGIQTYIINSARIVFLNERPQPRPGKGVTNTCQVCERSLLDSFSFCSLGCKIVGT SKNFIRKKKMCKETDGSDAESLSGVNSGSRKSKIQSFTPSTPPPTAVNYRTAKRRKGV PHRAPMGGLIIEY" gene 33372585..33373511 /locus_tag="TCM_025549" /note="dbxref CacaoGD:Thecc1EG025549" mRNA 33372585..33373511 /locus_tag="TCM_025549" /product="AIG2-like (avirulence induced gene) family protein" /inference="alignment:exonerate- protein:2:ricco:30073.m002299" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015705t1" /inference="similar to AA sequence:Phytozome:Glyma12g01820.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14507t1" CDS 33372677..33373234 /locus_tag="TCM_025549" /note="paralog of Thecc1EG015705t1" /codon_start=1 /product="AIG2-like (avirulence induced gene) family protein" /protein_id="EOY10180.1" /db_xref="Phytozome:Glyma12g01820.1" /db_xref="TAIR:AT3G02910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M8T3" /translation="MGVENNNCTNLIFTYGTLKRGFSNHVLLQDLMRTGDAVFKGTYR TVEKYPLVCGPYRVPFLLNMPGAGHRVTGELYAVSTRGLARVDELEGTSRGHYERLPI QLMPAGNGNESGNEENEEDLLTCAAESYYAHKSYEKEMWKRNGREGFWIYSEKEAKGY VKRKDRPQNLTFLDHIRIFTSSASD" mobile_element 33375383..33375445 /note="source:scaffold_9_CACTA_0929 10049 10117" /mobile_element_type="transposon:TIR/CACTA" gene complement(33377160..33382304) /locus_tag="TCM_025550" /note="dbxref CacaoGD:Thecc1EG025550" mRNA complement(join(33377160..33377398,33377504..33377547, 33379633..33379703,33379824..33379897,33380110..33380185, 33380339..33380416,33382066..33382247)) /locus_tag="TCM_025550" /product="Chaperone DnaJ-domain superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT5G16650.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034483t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s05800.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g12540t00001" CDS complement(join(33377505..33377547,33379633..33379703, 33379824..33379897,33380110..33380185,33380339..33380416, 33382066..33382095)) /locus_tag="TCM_025550" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG034483t1" /codon_start=1 /product="Chaperone DnaJ-domain superfamily protein isoform 1" /protein_id="EOY10181.1" /db_xref="Phytozome:POPTR_0019s05800.1" /db_xref="TAIR:AT5G16650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FMD2" /translation="MEGNDNSTPKDYYKLLEVDYDATDEKIRLNYRKLALKWHPDKHK GDSAVTAKFQEINEAYKVLMDPDKRFEYDLTGIYEIDKYTLREYLARFKGMILTCNGL GISHTSIWTQQLTETNDFVDE" mRNA complement(join(33378667..33378691,33379633..33379703, 33379824..33379897,33380110..33380185,33380339..33380416, 33382066..33382304)) /locus_tag="TCM_025550" /product="Chaperone DnaJ-domain superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT5G16650.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034483t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s05800.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1031t2; inference alignment:Newbler:10:TSA:cgbaP2_g12540t00001" CDS complement(join(33378691,33379633..33379703, 33379824..33379897,33380110..33380185,33380339..33380416, 33382066..33382095)) /locus_tag="TCM_025550" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG034483t1" /codon_start=1 /product="Chaperone DnaJ-domain superfamily protein isoform 2" /protein_id="EOY10182.1" /db_xref="Phytozome:POPTR_0019s05800.1" /db_xref="TAIR:AT5G16650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FMD2" /translation="MEGNDNSTPKDYYKLLEVDYDATDEKIRLNYRKLALKWHPDKHK GDSAVTAKFQEINEAYKVLMDPDKRFEYDLTGIYEIDKYTLREYLARFKGMILTCNGL GISHTSI" mobile_element complement(33383624..33383822) /note="source:scaffold_4_CACTA_0506 3300 3502" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(33384216..33388829) /note="source:INTACT11F_F4_scaffold_1-int 1 4690" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(33384409..33388483) /locus_tag="TCM_025551" /note="dbxref CacaoGD:Thecc1EG025551" mRNA complement(join(33384409..33385843,33386083..33386359, 33386760..33387023,33387114..33387283,33387365..33387596, 33388013..33388483)) /locus_tag="TCM_025551" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:frave:gene02166.4" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.46 coverage; weak similarity to Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" CDS complement(join(33384981..33385843,33386083..33386359, 33386760..33387023,33387114..33387283,33387365..33387596, 33388013..33388189)) /locus_tag="TCM_025551" /note="weak similarity to Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10183.1" /db_xref="TAIR:AT4G23160.1" /translation="MACSTAKEAWDRLRDEFQGSDRTRQLQILNLMREFEILRMKESN SVKEYIGKVMKIVNQHGHIEKVCKNKFENREKSPQASKRAEIAEETLLMAQTEPKVVE ANQWLLDSGVSSHMTPYVELFAELGTQHRSYVKIVLLVLEITQNLLNVGQMVDDGYEL LFKDHSCKIYDPRDKYLMTVAMKRNCFPIDFNDASTSGLMENLPSLTKSKHVCSTCQF GKLTRKPYPHASSSRSVGKLDLVHIDVGGPMSEVSLNGNKFFLIFVDDLSRMCWIYFM KAKSEHIPEEHKDKLQSKVVMGVFIGYSQHSKAYRVYHVDSGKISISRNVSFDEGSSW NWDKPQHTRVSATNTLSAFQNISDIELDEDELIDKAPVRGEIGYSQLVGIDCRDTFAP VARLDTIRLLIDLSAALDWKIYHMDVKSAFLNGKPNEEIFIEQPRGFEVGDRQNKVYK LHKALYGLKQAPRAWYSRIDAYILAKGFYKSLNEATLYVKKIKNEVAVIVSLYVDDTL ITGADQASIGEFKSTMKKEFHMSDLGQMKYFLGLEIHQSKESITLSQINYIQKVLKRF KMAECKPTSTPLVAHEKLSLNSGEILESRNDYRSLTECLLYICSTHREIMFAVSYLSR FMQRPSQLHLVAAKRVLRYLRGTTCHGINFIKNETI" mobile_element complement(33389117..33389281) /note="source:scaffold_4_CACTA_0483 2518 2664" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(33389248..33389359) /note="source:scaffold_4_CACTA_0506 2999 3123" /mobile_element_type="transposon:TIR/CACTA" gene 33389455..33395137 /locus_tag="TCM_025552" /note="dbxref CacaoGD:Thecc1EG025552" mRNA join(33389455..33389722,33389828..33389944, 33390092..33390138,33390218..33390288,33390668..33390781, 33390870..33391045,33391133..33391221,33391647..33391764, 33391977..33392050,33392151..33392198,33392721..33392889, 33393660..>33393688) /locus_tag="TCM_025552" /product="Serine/threonine kinases,ATP binding,catalytics isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s00430.1" /inference="similar to AA sequence:frave:gene23568" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1327t13; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8390t3; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1386t12" mRNA join(33389455..33389722,33389839..33389944, 33390092..33390138,33390218..33390288,33390668..33390781, 33390870..33391045,33391133..33391221,33391647..33391764, 33391977..33392050,33392151..33392198,33392721..33392889, 33393660..>33393688) /locus_tag="TCM_025552" /product="Serine/threonine kinases,ATP binding,catalytics isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s00430.1" /inference="similar to AA sequence:frave:gene23568" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1327t7; alternateUTRof:Thecc1EG025552t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8390t3; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1386t12" mRNA join(33389523..33389722,33389828..33389944, 33390092..33390138,33390218..33390288,33390668..33390781, 33390870..33391045,33391133..33391221,33391647..33391764, 33391977..33392050,33392151..33392198,33392721..33392889, 33393143..33393244,33393660..33393767,33394402..33395137) /locus_tag="TCM_025552" /product="Serine/threonine kinases,ATP binding,catalytics isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s00430.1" /inference="similar to AA sequence:Phytozome:POPTR_0017s00430.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:PASA:2:TSA:puevd3b024704t1a2; alternateUTRof:Thecc1EG025552t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8390t3" mRNA join(33389570..33389722,33389839..33389944, 33390092..33390138,33390218..33390288,33390668..33390781, 33390870..33391045,33391133..33391221,33391647..33391764, 33391977..33392050,33392151..33392198,33392721..33392889, 33393143..33393244,33393660..33393767,33394402..33395137) /locus_tag="TCM_025552" /product="Serine/threonine kinases,ATP binding,catalytics isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0017s00430.1" /inference="similar to AA sequence:Phytozome:POPTR_0017s00430.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8390t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8390t3" CDS join(33389861..33389944,33390092..33390138, 33390218..33390288,33390668..33390781,33390870..33391045, 33391133..33391221,33391647..33391764,33391977..33392050, 33392151..33392198,33392721..33392889,33393143..33393244, 33393660..33393767,33394402..33394590) /locus_tag="TCM_025552" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Serine/threonine kinases,ATP binding,catalytics isoform 1" /protein_id="EOY10184.1" /db_xref="Phytozome:POPTR_0017s00430.1" /db_xref="TAIR:AT3G51270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2DJS1" /translation="MKLDVDVLRYLSKDDFRVLTAVEMGMRNHEIVPSDLIDRIASLK HGGTYKVLKNLLKHKLLHHDSSKYDGFRLTYLGYDFLAIKTMVNRGVFTAVGRQIGVG KESDIFEVACEDGTVMAMKLHRLGRTSFRAVKSKRDYLRHRSSYNWLYLSRLAALKEF AFMKALEEHGFPVPNAVDCNRHCVVMSLIQGYPLVQVKQLQNPETVFDTIIGLVVRLA EHGLIHCDFNEFNIMIDDDEKVTMIDFPQMVSVSHRNAQMYFDRDIECIFKFFGKRFN MSFEEQSDDIDGSEVDEDESGRPSFSSITKTAGFLDKELAASGFTRKDQDDIEKFIEG NAGDDVSDDEHESGLCQTNIKGFDSLHLDQKEPTSSCNEEEQGYENQHSLEAGLTGNP EGQNSSNEEEDNQNADENDAELMKSLAKQRRRAMAAARRGRKSVASRNSYKDKGGKSS NNSKIQKQLSSW" CDS join(33389861..33389944,33390092..33390138, 33390218..33390288,33390668..33390781,33390870..33391045, 33391133..33391221,33391647..33391764,33391977..33392050, 33392151..33392198,33392721..33392889,33393143..33393244, 33393660..33393767,33394402..33394590) /locus_tag="TCM_025552" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Serine/threonine kinases,ATP binding,catalytics isoform 1" /protein_id="EOY10185.1" /db_xref="Phytozome:POPTR_0017s00430.1" /db_xref="TAIR:AT3G51270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2DJS1" /translation="MKLDVDVLRYLSKDDFRVLTAVEMGMRNHEIVPSDLIDRIASLK HGGTYKVLKNLLKHKLLHHDSSKYDGFRLTYLGYDFLAIKTMVNRGVFTAVGRQIGVG KESDIFEVACEDGTVMAMKLHRLGRTSFRAVKSKRDYLRHRSSYNWLYLSRLAALKEF AFMKALEEHGFPVPNAVDCNRHCVVMSLIQGYPLVQVKQLQNPETVFDTIIGLVVRLA EHGLIHCDFNEFNIMIDDDEKVTMIDFPQMVSVSHRNAQMYFDRDIECIFKFFGKRFN MSFEEQSDDIDGSEVDEDESGRPSFSSITKTAGFLDKELAASGFTRKDQDDIEKFIEG NAGDDVSDDEHESGLCQTNIKGFDSLHLDQKEPTSSCNEEEQGYENQHSLEAGLTGNP EGQNSSNEEEDNQNADENDAELMKSLAKQRRRAMAAARRGRKSVASRNSYKDKGGKSS NNSKIQKQLSSW" CDS join(33389861..33389944,33390092..33390138, 33390218..33390288,33390668..33390781,33390870..33391045, 33391133..33391221,33391647..33391764,33391977..33392050, 33392151..33392198,33392721..33392889,33393660..>33393686) /locus_tag="TCM_025552" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene23568" /codon_start=1 /product="Serine/threonine kinases,ATP binding,catalytics isoform 3" /protein_id="EOY10186.1" /db_xref="TAIR:AT3G51270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2DJS1" /translation="MKLDVDVLRYLSKDDFRVLTAVEMGMRNHEIVPSDLIDRIASLK HGGTYKVLKNLLKHKLLHHDSSKYDGFRLTYLGYDFLAIKTMVNRGVFTAVGRQIGVG KESDIFEVACEDGTVMAMKLHRLGRTSFRAVKSKRDYLRHRSSYNWLYLSRLAALKEF AFMKALEEHGFPVPNAVDCNRHCVVMSLIQGYPLVQVKQLQNPETVFDTIIGLVVRLA EHGLIHCDFNEFNIMIDDDEKVTMIDFPQMVSVSHRNAQMYFDRDIECIFKFFGKRFN MSFEEQSDDIDGSEVDEDESGRPSFSSITKTAGFLDKELAASGFTRKDQDDIEKKEPT SSCNE" CDS join(33389861..33389944,33390092..33390138, 33390218..33390288,33390668..33390781,33390870..33391045, 33391133..33391221,33391647..33391764,33391977..33392050, 33392151..33392198,33392721..33392889,33393660..>33393686) /locus_tag="TCM_025552" /note="encoded by transcript variant 4; alternatively spliced; dbxref frave:gene23568" /codon_start=1 /product="Serine/threonine kinases,ATP binding,catalytics isoform 3" /protein_id="EOY10187.1" /db_xref="TAIR:AT3G51270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2DJS1" /translation="MKLDVDVLRYLSKDDFRVLTAVEMGMRNHEIVPSDLIDRIASLK HGGTYKVLKNLLKHKLLHHDSSKYDGFRLTYLGYDFLAIKTMVNRGVFTAVGRQIGVG KESDIFEVACEDGTVMAMKLHRLGRTSFRAVKSKRDYLRHRSSYNWLYLSRLAALKEF AFMKALEEHGFPVPNAVDCNRHCVVMSLIQGYPLVQVKQLQNPETVFDTIIGLVVRLA EHGLIHCDFNEFNIMIDDDEKVTMIDFPQMVSVSHRNAQMYFDRDIECIFKFFGKRFN MSFEEQSDDIDGSEVDEDESGRPSFSSITKTAGFLDKELAASGFTRKDQDDIEKKEPT SSCNE" mobile_element complement(33395843..33396128) /note="source:INTACT402_F76_scaffold_5-int 32 276" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 33395874..33396350 /note="source:CACAO_M_E4368_F316_scaffold_2 36 494" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(33396301..33396976) /note="source:INTACT459_F220_scaffold_4-int 7379 8042" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(33397230..33397902) /note="source:INTACT459_F220_scaffold_4-int 6895 7542" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 33397895..33398919 /note="source:CACAO_M_S_E66657_F76_scaffold_5 5067 6089" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(33399284..33399569) /note="source:INTACT402_F76_scaffold_5-int 32 276" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 33399315..33399791 /note="source:CACAO_M_E4368_F316_scaffold_2 36 494" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(33399742..33400409) /note="source:INTACT459_F220_scaffold_4-int 7379 8042" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 33400111..33400465 /note="source:CACAO_M_S_E122136_F76_scaffold_10 812 1136" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(33400586..33401258) /note="source:INTACT459_F220_scaffold_4-int 6895 7543" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(33401251..33402382) /note="source:CACAO_M_S_E119572_F76_scaffold_9 2478 3606" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 33402371..33402465 /note="source:CACAO_M_E57385_F197_scaffold_9 5984 6078" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 33402716..33402841 /note="source:CACAO_M_E57385_F197_scaffold_9 155 291" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(33402886..33402957) /note="source:INTACT433_F212_scaffold_1-int 3065 3136" /mobile_element_type="retrotransposon:LTR/Copia" gene 33403266..33405477 /locus_tag="TCM_025554" /note="dbxref CacaoGD:Thecc1EG025554" mRNA join(33403266..33403388,33403528..33403670, 33403787..33403824,33403993..33404395,33404556..33404792, 33404897..33405055,33405194..33405477) /locus_tag="TCM_025554" /product="GroES-like zinc-binding dehydrogenase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s05830.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025555t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s05830.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8470t2" CDS join(33403352..33403388,33403528..33403670, 33403787..33403824,33403993..33404395,33404556..33404792, 33404897..33405055,33405194..33405304) /locus_tag="TCM_025554" /note="paralog of Thecc1EG025555t1" /codon_start=1 /product="GroES-like zinc-binding dehydrogenase family protein" /protein_id="EOY10188.1" /db_xref="Phytozome:POPTR_0019s05830.1" /db_xref="TAIR:AT4G22110.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPW3" /translation="MPNANSQVLTCKAIVSWGKDEPLKVEDIQVEPPKSSEVRVKMLY ASVCHTDILFANGFPIPSFPRVMGHEGVGVIESFGNDVRGLNEGDIVIPAYVAECKTC ENCMSEKTNLCLKYPLSYNGLMLDGTSRLSIGGQTAYHAFSCSTWSEYMVINANFVLK IDPSIPLSDASFLSCGFSTGYGAAWKDAKVEKGSTVAVFGLGAVGLGAIKGAKSQGAT KVIGIDKNPRKEAKGRAFGMTDFINPDDSDRCIAELVKDLTGGMGVDYSFECTGVPPL INEAIEATKLGAGKIIQIGAGEHSSVNINFIGILLGRTLKGSIFGGLKGKSDLPIIYE KCKNREIQLDELLTHEIQLQEVNNVFELLKQPDCVKVLIKI" gene 33406178..33410527 /locus_tag="TCM_025555" /note="dbxref CacaoGD:Thecc1EG025555" mRNA join(33406178..33406220,33408085..33408511, 33408629..33408666,33408823..33409171,33409363..33409602, 33409719..33409877,33409993..33410527) /locus_tag="TCM_025555" /product="Zinc-binding alcohol dehydrogenase family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025554t1" /inference="similar to AA sequence:Phytozome:GSVIVT01025014001" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaL_g10529t00001" mobile_element 33407888..33407966 /note="source:CACAO_M_E69923_F2_scaffold_9 5264 5347" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(33408182..33408511,33408629..33408666, 33408823..33409171,33409363..33409602,33409719..33409877, 33409993..33410103) /locus_tag="TCM_025555" /note="paralog of Thecc1EG025554t1" /codon_start=1 /product="Zinc-binding alcohol dehydrogenase family protein, putative" /protein_id="EOY10189.1" /db_xref="Phytozome:GSVIVT01025014001" /db_xref="TAIR:AT1G22440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IN75" /translation="MSNSSSQLITCKVSLEFSKVVLIKTVLSYCFSLNSEGWDYSYFL LFFATLISLMLVLWSNMAAIVCWEKGEPLKVEEIQVEPPKSSEVRVKMLCASVCHSDI LSTRGFPSPLFPRVMGHEGVGVVESICEEVNGLKQGDVVIPTYVAECQTCENCTSENT NLCLTYPLTLNCLMLDGTSRMSIRGQSLYHTFSCATWSEYMVINANYVVKIHPSIAPS HASFLSCGYSTGFGAAWKDAKVVEGARIQGATKIIGIDKNPRKKENGHVFGMTDFINP DGSDKYSICESVRALTDGKGVDYSFECSGVAPLVNEAIESTKIGTGKTILMGIGDHQS LQINFLPLLCGRTLKGCVYGGIKTISDLPILLEKCRNKEIHLDELLTHEVQLEDINKA FELLKQPDCVKVLVKI" gene complement(33411381..33414544) /locus_tag="TCM_025556" /note="dbxref CacaoGD:Thecc1EG025556" mRNA complement(join(33411381..33411578,33411669..33411749, 33412170..33412263,33413118..33413247,33414357..33414544)) /locus_tag="TCM_025556" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024331001" /inference="similar to AA sequence:ricco:30073.m002306" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc951t1" CDS complement(join(33411441..33411578,33411669..33411749, 33412170..33412263,33413118..33413247,33414357..33414390)) /locus_tag="TCM_025556" /note="dbxref ricco:30073.m002306" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10190.1" /db_xref="TAIR:AT5G16660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7M871" /translation="MASCFAPVSISGGSHLKAREVWFTKSSTFGKTPSLAVRRKPMPS NRQFSVCAEYRDGSRGGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRA KRPIYYDEGLEKTRQTLNAKISQLNSAIDNVSSRLRGGNNSPTVPVETDPEVEATM" gene complement(33415212..33427633) /locus_tag="TCM_025557" /note="dbxref CacaoGD:Thecc1EG025557" mRNA complement(join(33415212..33417105,33418027..33418415, 33420280..33420404,33420560..33420790,33420879..33421530, 33421732..33422229,33422313..33422621,33422715..33422809, 33422931..33423016,33423501..33424382,33426299..33426376, 33426813..33427094,33427163..33427633)) /locus_tag="TCM_025557" /product="RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s07550.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s07550.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8707t3" mRNA complement(join(33415212..33417105,33418027..33418415, 33420280..33420404,33420560..33420790,33420879..33421530, 33421732..33422229,33422313..33422621,33422715..33422809, 33422931..33423016,33423501..33424382,33426288..33426376, 33426813..33427633)) /locus_tag="TCM_025557" /product="RING/FYVE/PHD zinc finger superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s07550.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s07550.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:PASA:2:TSA:puevd3b024709t1a4; alternateUTRof:Thecc1EG025557t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8707t3" mRNA complement(join(33415212..33417105,33418027..33418415, 33420280..33420404,33420560..33420790,33420879..33421530, 33421732..33422229,33422313..33422621,33422715..33422809, 33422931..33423016,33423501..33424382,33426299..33426393, 33426813..33427633)) /locus_tag="TCM_025557" /product="RING/FYVE/PHD zinc finger superfamily protein, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s07550.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s07550.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:PASA:2:TSA:puevd3b024709t1a6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8707t3" mRNA complement(join(33415212..33417105,33418027..33418415, 33420280..33420404,33420560..33420790,33420879..33421530, 33421732..33422229,33422313..33422621,33422715..33422809, 33422931..33423016,33423501..33424382,33426288..33426393, 33426813..33427633)) /locus_tag="TCM_025557" /product="RING/FYVE/PHD zinc finger superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s07550.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s07550.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:PASA:2:TSA:puevd3b024709t1a5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8707t3" mRNA complement(join(33415212..33417105,33418027..33418415, 33420280..33420404,33420560..33420790,33420879..33421530, 33421732..33422229,33422313..33422621,33422715..33422809, 33422931..33423016,33423501..33424382,33426288..33426376, 33426809..33427633)) /locus_tag="TCM_025557" /product="RING/FYVE/PHD zinc finger superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s07550.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s07550.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:PASA:2:TSA:puevd3b024709t1a2; alternateUTRof:Thecc1EG025557t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8707t3" mRNA complement(join(33415288..33417105,33418027..33418415, 33420280..33420404,33420560..33420790,33420879..33421530, 33421732..33422229,33422313..33422621,33422715..33422809, 33422931..33423016,33423501..33424213,33426299..33426376, 33426813..33427210)) /locus_tag="TCM_025557" /product="RING/FYVE/PHD zinc finger superfamily protein, putative isoform 8" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s07550.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s07550.1" /note="transcript variant 8; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc803t11; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8707t3" mRNA complement(join(33415613..33417105,33418027..33418415, 33420280..33420404,33420560..33420790,33420879..33421530, 33421732..33422229,33422313..33422621,33422715..33422809, 33422931..33423016,33423501..33424382,33424568..33424639, 33426299..33426376,33426813..33427212)) /locus_tag="TCM_025557" /product="RING/FYVE/PHD zinc finger superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s07550.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s07550.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8707t3; alternateUTRof:Thecc1EG025557t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8707t3" mRNA complement(join(33415613..33417105,33418027..33418415, 33420280..33420404,33420560..33420790,33420879..33421530, 33421732..33422229,33422313..33422621,33422715..33422809, 33422931..33423016,33423501..33424036,33424166..33424382, 33426299..33426376,33426809..33427212)) /locus_tag="TCM_025557" /product="RING/FYVE/PHD zinc finger superfamily protein, putative isoform 7" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s07550.1" /inference="similar to AA sequence:Phytozome:GSVIVT01024330001" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8707t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8707t3" CDS complement(join(33416122..33417105,33418027..33418415, 33420280..33420404,33420560..33420790,33420879..33421530, 33421732..33422229,33422313..33422621,33422715..33422809, 33422931..33423016,33423501..33424382,33426299..33426376, 33426813..33426908)) /locus_tag="TCM_025557" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1" /protein_id="EOY10191.1" /db_xref="Phytozome:POPTR_0013s07550.1" /db_xref="TAIR:AT5G16680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPW6" /translation="MAAATAAAVVVRRKERLVEELYNATGIIYEPEITPILRGIYCMQ GPADEIEQSIQKNMAPPKTVRKLVRRYMSQKVYTKAESGTCNVCSAPCSSCMHLSTPQ MESKSEEFSDDTDRVAVASQYSINEDKAGDSLQPTPSEASNLLSVNSSHDSYSENIES KATIRPSNVSDASEDVEIQRTFSNAYDGSKGVEGHDDNISCASRASDENAASSYCNKD LDSKNSSRSSASVSSLGSGKVLSSQKLELSELPSIKEEVDAGSTSLRMQSPHSHSQSG KSAVGGSSEISTKIHSKLEADIDSNSGDPADKTDKSLNEDEQDKLNELVELPDKQESP SQAVSGDESYESDATEHDVKVCDICGDAGREDLLAICSKCADGAEHTYCMREMLQKVP EGDWLCEECKLAEETESQKQGSDAEGKRANKLSSGTQSLGKRHAENQEGSSAPKRQAV ETNMASPKSLSPSRVAALSREGSFKNLDKGKMRPSPQISLGNHSGSDMPETARSPTSG PRLQTPKGTLLKSNSFNNLNIKPKVKLVDEVVLQKQKGAREHASLDSKEESARMMGKS MSFKSTNSGRLNTGESKFKMLSSKYSHVQDLKGLKQVKERISLERKNFSKLDRSSSTV STPKVDQKQTPRADTISNSSASNNRESKVVQSDGKPSTLSRSTSSLARKVVENAVTSA VGVSSTNGRISSEQKLNLVSPKEEPSSSSSWTAERQPNNVNGVMSDGLSRSLDSTNQS EKSRESSVGRSRSVPCLKCKEMGHTAEYCSVPQVSAADMSAPRTSREEINKGNKLKAA IEAAIRMRPGICERPPQDQSPFSNKAKNMIAVEGAHEAQTNVQNQASIGNQKLLNSHS TDAVSVVSSVGNLSMRDISVPLLATVSAITKMSAIPEHEYIWQGAFEVHKSGKLPDFC GGIQAHLSTLASPKVLEVVNTFPHKVSLNEVPRLSTWPAQFHDSGPKEDNIALYFFAK DPESYEKNYKVLLETMVKNDLALKGNFEGVELLIFPSNLLPENCQRWNTLFFLWGVFK GRRVNCSNSSKSACIPDASMVRLEGEVSTDIPQPVENEPAACDSSCNVVPVTSTAEKT CILTDKVGDDKVSSLEQTYVGIKAKLEEQDSKIDSRFLSRIATSSTQVHPEMKCTSSP VEESKFPDCRFDTELKPCLQATETNSGSVKVEKEEVHVREDYPSLKNLPTGKQEAIVV GKIDGDCVRIRDSKDDGYGDGKISSKRDFDSWQLNHRKRPFLDLTETVSEISTDSSQK MPWSEVKRVSVVGVSDNKKLKTGFSGIYQDSSPRDQGPFTDSLASDRHDLGSCSSVEE KICDIACVEKVIPEDLGSSERFFFPMDSHHGREFRLVDNSKPWKEFSAKDEDQAHDVF PNLELALGAETRPPNKGILPFFVGTVDKNSNQDRPLDKVRGKEEEDDVPASLSLSLSF PFPEKEQSLKSVSKTEQLLPERHPVNTSLLLFGGFPDK" CDS complement(join(33416122..33417105,33418027..33418415, 33420280..33420404,33420560..33420790,33420879..33421530, 33421732..33422229,33422313..33422621,33422715..33422809, 33422931..33423016,33423501..33424036,33424166..33424382, 33426299..33426376,33426809..33426823)) /locus_tag="TCM_025557" /note="encoded by transcript variant 7; alternatively spliced" /codon_start=1 /product="RING/FYVE/PHD zinc finger superfamily protein, putative isoform 7" /protein_id="EOY10197.1" /db_xref="Phytozome:GSVIVT01024330001" /db_xref="TAIR:AT5G16680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPW6" /translation="MNQRHITPILRGIYCMQGPADEIEQSIQKNMAPPKTVRKLVRRY MSQKVYTKAESGTCNVCSAPCSSCMHLSTPQMESKSEEFSDDTDRVAVASQYSINEDK AEDVEIQRTFSNAYDGSKGVEGHDDNISCASRASDENAASSYCNKDLDSKNSSRSSAS VSSLGSGKVLSSQKLELSELPSIKEEVDAGSTSLRMQSPHSHSQSGKSAVGGSSEIST KIHSKLEADIDSNSGDPADKTDKSLNEDEQDKLNELVELPDKQESPSQAVSGDESYES DATEHDVKVCDICGDAGREDLLAICSKCADGAEHTYCMREMLQKVPEGDWLCEECKLA EETESQKQGSDAEGKRANKLSSGTQSLGKRHAENQEGSSAPKRQAVETNMASPKSLSP SRVAALSREGSFKNLDKGKMRPSPQISLGNHSGSDMPETARSPTSGPRLQTPKGTLLK SNSFNNLNIKPKVKLVDEVVLQKQKGAREHASLDSKEESARMMGKSMSFKSTNSGRLN TGESKFKMLSSKYSHVQDLKGLKQVKERISLERKNFSKLDRSSSTVSTPKVDQKQTPR ADTISNSSASNNRESKVVQSDGKPSTLSRSTSSLARKVVENAVTSAVGVSSTNGRISS EQKLNLVSPKEEPSSSSSWTAERQPNNVNGVMSDGLSRSLDSTNQSEKSRESSVGRSR SVPCLKCKEMGHTAEYCSVPQVSAADMSAPRTSREEINKGNKLKAAIEAAIRMRPGIC ERPPQDQSPFSNKAKNMIAVEGAHEAQTNVQNQASIGNQKLLNSHSTDAVSVVSSVGN LSMRDISVPLLATVSAITKMSAIPEHEYIWQGAFEVHKSGKLPDFCGGIQAHLSTLAS PKVLEVVNTFPHKVSLNEVPRLSTWPAQFHDSGPKEDNIALYFFAKDPESYEKNYKVL LETMVKNDLALKGNFEGVELLIFPSNLLPENCQRWNTLFFLWGVFKGRRVNCSNSSKS ACIPDASMVRLEGEVSTDIPQPVENEPAACDSSCNVVPVTSTAEKTCILTDKVGDDKV SSLEQTYVGIKAKLEEQDSKIDSRFLSRIATSSTQVHPEMKCTSSPVEESKFPDCRFD TELKPCLQATETNSGSVKVEKEEVHVREDYPSLKNLPTGKQEAIVVGKIDGDCVRIRD SKDDGYGDGKISSKRDFDSWQLNHRKRPFLDLTETVSEISTDSSQKMPWSEVKRVSVV GVSDNKKLKTGFSGIYQDSSPRDQGPFTDSLASDRHDLGSCSSVEEKICDIACVEKVI PEDLGSSERFFFPMDSHHGREFRLVDNSKPWKEFSAKDEDQAHDVFPNLELALGAETR PPNKGILPFFVGTVDKNSNQDRPLDKVRGKEEEDDVPASLSLSLSFPFPEKEQSLKSV SKTEQLLPERHPVNTSLLLFGGFPDK" CDS complement(join(33416122..33417105,33418027..33418415, 33420280..33420404,33420560..33420790,33420879..33421530, 33421732..33422229,33422313..33422621,33422715..33422809, 33422931..33423016,33423501..33424382,33426299..33426346)) /locus_tag="TCM_025557" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="RING/FYVE/PHD zinc finger superfamily protein, putative isoform 4" /protein_id="EOY10194.1" /db_xref="Phytozome:POPTR_0013s07550.1" /db_xref="TAIR:AT5G16680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPW6" /translation="MQGPADEIEQSIQKNMAPPKTVRKLVRRYMSQKVYTKAESGTCN VCSAPCSSCMHLSTPQMESKSEEFSDDTDRVAVASQYSINEDKAGDSLQPTPSEASNL LSVNSSHDSYSENIESKATIRPSNVSDASEDVEIQRTFSNAYDGSKGVEGHDDNISCA SRASDENAASSYCNKDLDSKNSSRSSASVSSLGSGKVLSSQKLELSELPSIKEEVDAG STSLRMQSPHSHSQSGKSAVGGSSEISTKIHSKLEADIDSNSGDPADKTDKSLNEDEQ DKLNELVELPDKQESPSQAVSGDESYESDATEHDVKVCDICGDAGREDLLAICSKCAD GAEHTYCMREMLQKVPEGDWLCEECKLAEETESQKQGSDAEGKRANKLSSGTQSLGKR HAENQEGSSAPKRQAVETNMASPKSLSPSRVAALSREGSFKNLDKGKMRPSPQISLGN HSGSDMPETARSPTSGPRLQTPKGTLLKSNSFNNLNIKPKVKLVDEVVLQKQKGAREH ASLDSKEESARMMGKSMSFKSTNSGRLNTGESKFKMLSSKYSHVQDLKGLKQVKERIS LERKNFSKLDRSSSTVSTPKVDQKQTPRADTISNSSASNNRESKVVQSDGKPSTLSRS TSSLARKVVENAVTSAVGVSSTNGRISSEQKLNLVSPKEEPSSSSSWTAERQPNNVNG VMSDGLSRSLDSTNQSEKSRESSVGRSRSVPCLKCKEMGHTAEYCSVPQVSAADMSAP RTSREEINKGNKLKAAIEAAIRMRPGICERPPQDQSPFSNKAKNMIAVEGAHEAQTNV QNQASIGNQKLLNSHSTDAVSVVSSVGNLSMRDISVPLLATVSAITKMSAIPEHEYIW QGAFEVHKSGKLPDFCGGIQAHLSTLASPKVLEVVNTFPHKVSLNEVPRLSTWPAQFH DSGPKEDNIALYFFAKDPESYEKNYKVLLETMVKNDLALKGNFEGVELLIFPSNLLPE NCQRWNTLFFLWGVFKGRRVNCSNSSKSACIPDASMVRLEGEVSTDIPQPVENEPAAC DSSCNVVPVTSTAEKTCILTDKVGDDKVSSLEQTYVGIKAKLEEQDSKIDSRFLSRIA TSSTQVHPEMKCTSSPVEESKFPDCRFDTELKPCLQATETNSGSVKVEKEEVHVREDY PSLKNLPTGKQEAIVVGKIDGDCVRIRDSKDDGYGDGKISSKRDFDSWQLNHRKRPFL DLTETVSEISTDSSQKMPWSEVKRVSVVGVSDNKKLKTGFSGIYQDSSPRDQGPFTDS LASDRHDLGSCSSVEEKICDIACVEKVIPEDLGSSERFFFPMDSHHGREFRLVDNSKP WKEFSAKDEDQAHDVFPNLELALGAETRPPNKGILPFFVGTVDKNSNQDRPLDKVRGK EEEDDVPASLSLSLSFPFPEKEQSLKSVSKTEQLLPERHPVNTSLLLFGGFPDK" CDS complement(join(33416122..33417105,33418027..33418415, 33420280..33420404,33420560..33420790,33420879..33421530, 33421732..33422229,33422313..33422621,33422715..33422809, 33422931..33423016,33423501..33424343)) /locus_tag="TCM_025557" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="RING/FYVE/PHD zinc finger superfamily protein, putative isoform 2" /protein_id="EOY10192.1" /db_xref="Phytozome:POPTR_0013s07550.1" /db_xref="TAIR:AT5G16680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPW6" /translation="MSQKVYTKAESGTCNVCSAPCSSCMHLSTPQMESKSEEFSDDTD RVAVASQYSINEDKAGDSLQPTPSEASNLLSVNSSHDSYSENIESKATIRPSNVSDAS EDVEIQRTFSNAYDGSKGVEGHDDNISCASRASDENAASSYCNKDLDSKNSSRSSASV SSLGSGKVLSSQKLELSELPSIKEEVDAGSTSLRMQSPHSHSQSGKSAVGGSSEISTK IHSKLEADIDSNSGDPADKTDKSLNEDEQDKLNELVELPDKQESPSQAVSGDESYESD ATEHDVKVCDICGDAGREDLLAICSKCADGAEHTYCMREMLQKVPEGDWLCEECKLAE ETESQKQGSDAEGKRANKLSSGTQSLGKRHAENQEGSSAPKRQAVETNMASPKSLSPS RVAALSREGSFKNLDKGKMRPSPQISLGNHSGSDMPETARSPTSGPRLQTPKGTLLKS NSFNNLNIKPKVKLVDEVVLQKQKGAREHASLDSKEESARMMGKSMSFKSTNSGRLNT GESKFKMLSSKYSHVQDLKGLKQVKERISLERKNFSKLDRSSSTVSTPKVDQKQTPRA DTISNSSASNNRESKVVQSDGKPSTLSRSTSSLARKVVENAVTSAVGVSSTNGRISSE QKLNLVSPKEEPSSSSSWTAERQPNNVNGVMSDGLSRSLDSTNQSEKSRESSVGRSRS VPCLKCKEMGHTAEYCSVPQVSAADMSAPRTSREEINKGNKLKAAIEAAIRMRPGICE RPPQDQSPFSNKAKNMIAVEGAHEAQTNVQNQASIGNQKLLNSHSTDAVSVVSSVGNL SMRDISVPLLATVSAITKMSAIPEHEYIWQGAFEVHKSGKLPDFCGGIQAHLSTLASP KVLEVVNTFPHKVSLNEVPRLSTWPAQFHDSGPKEDNIALYFFAKDPESYEKNYKVLL ETMVKNDLALKGNFEGVELLIFPSNLLPENCQRWNTLFFLWGVFKGRRVNCSNSSKSA CIPDASMVRLEGEVSTDIPQPVENEPAACDSSCNVVPVTSTAEKTCILTDKVGDDKVS SLEQTYVGIKAKLEEQDSKIDSRFLSRIATSSTQVHPEMKCTSSPVEESKFPDCRFDT ELKPCLQATETNSGSVKVEKEEVHVREDYPSLKNLPTGKQEAIVVGKIDGDCVRIRDS KDDGYGDGKISSKRDFDSWQLNHRKRPFLDLTETVSEISTDSSQKMPWSEVKRVSVVG VSDNKKLKTGFSGIYQDSSPRDQGPFTDSLASDRHDLGSCSSVEEKICDIACVEKVIP EDLGSSERFFFPMDSHHGREFRLVDNSKPWKEFSAKDEDQAHDVFPNLELALGAETRP PNKGILPFFVGTVDKNSNQDRPLDKVRGKEEEDDVPASLSLSLSFPFPEKEQSLKSVS KTEQLLPERHPVNTSLLLFGGFPDK" CDS complement(join(33416122..33417105,33418027..33418415, 33420280..33420404,33420560..33420790,33420879..33421530, 33421732..33422229,33422313..33422621,33422715..33422809, 33422931..33423016,33423501..33424343)) /locus_tag="TCM_025557" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="RING/FYVE/PHD zinc finger superfamily protein, putative isoform 2" /protein_id="EOY10193.1" /db_xref="Phytozome:POPTR_0013s07550.1" /db_xref="TAIR:AT5G16680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPW6" /translation="MSQKVYTKAESGTCNVCSAPCSSCMHLSTPQMESKSEEFSDDTD RVAVASQYSINEDKAGDSLQPTPSEASNLLSVNSSHDSYSENIESKATIRPSNVSDAS EDVEIQRTFSNAYDGSKGVEGHDDNISCASRASDENAASSYCNKDLDSKNSSRSSASV SSLGSGKVLSSQKLELSELPSIKEEVDAGSTSLRMQSPHSHSQSGKSAVGGSSEISTK IHSKLEADIDSNSGDPADKTDKSLNEDEQDKLNELVELPDKQESPSQAVSGDESYESD ATEHDVKVCDICGDAGREDLLAICSKCADGAEHTYCMREMLQKVPEGDWLCEECKLAE ETESQKQGSDAEGKRANKLSSGTQSLGKRHAENQEGSSAPKRQAVETNMASPKSLSPS RVAALSREGSFKNLDKGKMRPSPQISLGNHSGSDMPETARSPTSGPRLQTPKGTLLKS NSFNNLNIKPKVKLVDEVVLQKQKGAREHASLDSKEESARMMGKSMSFKSTNSGRLNT GESKFKMLSSKYSHVQDLKGLKQVKERISLERKNFSKLDRSSSTVSTPKVDQKQTPRA DTISNSSASNNRESKVVQSDGKPSTLSRSTSSLARKVVENAVTSAVGVSSTNGRISSE QKLNLVSPKEEPSSSSSWTAERQPNNVNGVMSDGLSRSLDSTNQSEKSRESSVGRSRS VPCLKCKEMGHTAEYCSVPQVSAADMSAPRTSREEINKGNKLKAAIEAAIRMRPGICE RPPQDQSPFSNKAKNMIAVEGAHEAQTNVQNQASIGNQKLLNSHSTDAVSVVSSVGNL SMRDISVPLLATVSAITKMSAIPEHEYIWQGAFEVHKSGKLPDFCGGIQAHLSTLASP KVLEVVNTFPHKVSLNEVPRLSTWPAQFHDSGPKEDNIALYFFAKDPESYEKNYKVLL ETMVKNDLALKGNFEGVELLIFPSNLLPENCQRWNTLFFLWGVFKGRRVNCSNSSKSA CIPDASMVRLEGEVSTDIPQPVENEPAACDSSCNVVPVTSTAEKTCILTDKVGDDKVS SLEQTYVGIKAKLEEQDSKIDSRFLSRIATSSTQVHPEMKCTSSPVEESKFPDCRFDT ELKPCLQATETNSGSVKVEKEEVHVREDYPSLKNLPTGKQEAIVVGKIDGDCVRIRDS KDDGYGDGKISSKRDFDSWQLNHRKRPFLDLTETVSEISTDSSQKMPWSEVKRVSVVG VSDNKKLKTGFSGIYQDSSPRDQGPFTDSLASDRHDLGSCSSVEEKICDIACVEKVIP EDLGSSERFFFPMDSHHGREFRLVDNSKPWKEFSAKDEDQAHDVFPNLELALGAETRP PNKGILPFFVGTVDKNSNQDRPLDKVRGKEEEDDVPASLSLSLSFPFPEKEQSLKSVS KTEQLLPERHPVNTSLLLFGGFPDK" CDS complement(join(33416122..33417105,33418027..33418415, 33420280..33420404,33420560..33420790,33420879..33421530, 33421732..33422229,33422313..33422621,33422715..33422809, 33422931..33423016,33423501..33424343)) /locus_tag="TCM_025557" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="RING/FYVE/PHD zinc finger superfamily protein, putative isoform 2" /protein_id="EOY10195.1" /db_xref="Phytozome:POPTR_0013s07550.1" /db_xref="TAIR:AT5G16680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPW6" /translation="MSQKVYTKAESGTCNVCSAPCSSCMHLSTPQMESKSEEFSDDTD RVAVASQYSINEDKAGDSLQPTPSEASNLLSVNSSHDSYSENIESKATIRPSNVSDAS EDVEIQRTFSNAYDGSKGVEGHDDNISCASRASDENAASSYCNKDLDSKNSSRSSASV SSLGSGKVLSSQKLELSELPSIKEEVDAGSTSLRMQSPHSHSQSGKSAVGGSSEISTK IHSKLEADIDSNSGDPADKTDKSLNEDEQDKLNELVELPDKQESPSQAVSGDESYESD ATEHDVKVCDICGDAGREDLLAICSKCADGAEHTYCMREMLQKVPEGDWLCEECKLAE ETESQKQGSDAEGKRANKLSSGTQSLGKRHAENQEGSSAPKRQAVETNMASPKSLSPS RVAALSREGSFKNLDKGKMRPSPQISLGNHSGSDMPETARSPTSGPRLQTPKGTLLKS NSFNNLNIKPKVKLVDEVVLQKQKGAREHASLDSKEESARMMGKSMSFKSTNSGRLNT GESKFKMLSSKYSHVQDLKGLKQVKERISLERKNFSKLDRSSSTVSTPKVDQKQTPRA DTISNSSASNNRESKVVQSDGKPSTLSRSTSSLARKVVENAVTSAVGVSSTNGRISSE QKLNLVSPKEEPSSSSSWTAERQPNNVNGVMSDGLSRSLDSTNQSEKSRESSVGRSRS VPCLKCKEMGHTAEYCSVPQVSAADMSAPRTSREEINKGNKLKAAIEAAIRMRPGICE RPPQDQSPFSNKAKNMIAVEGAHEAQTNVQNQASIGNQKLLNSHSTDAVSVVSSVGNL SMRDISVPLLATVSAITKMSAIPEHEYIWQGAFEVHKSGKLPDFCGGIQAHLSTLASP KVLEVVNTFPHKVSLNEVPRLSTWPAQFHDSGPKEDNIALYFFAKDPESYEKNYKVLL ETMVKNDLALKGNFEGVELLIFPSNLLPENCQRWNTLFFLWGVFKGRRVNCSNSSKSA CIPDASMVRLEGEVSTDIPQPVENEPAACDSSCNVVPVTSTAEKTCILTDKVGDDKVS SLEQTYVGIKAKLEEQDSKIDSRFLSRIATSSTQVHPEMKCTSSPVEESKFPDCRFDT ELKPCLQATETNSGSVKVEKEEVHVREDYPSLKNLPTGKQEAIVVGKIDGDCVRIRDS KDDGYGDGKISSKRDFDSWQLNHRKRPFLDLTETVSEISTDSSQKMPWSEVKRVSVVG VSDNKKLKTGFSGIYQDSSPRDQGPFTDSLASDRHDLGSCSSVEEKICDIACVEKVIP EDLGSSERFFFPMDSHHGREFRLVDNSKPWKEFSAKDEDQAHDVFPNLELALGAETRP PNKGILPFFVGTVDKNSNQDRPLDKVRGKEEEDDVPASLSLSLSFPFPEKEQSLKSVS KTEQLLPERHPVNTSLLLFGGFPDK" CDS complement(join(33416122..33417105,33418027..33418415, 33420280..33420404,33420560..33420790,33420879..33421530, 33421732..33422229,33422313..33422621,33422715..33422809, 33422931..33423016,33423501..33424343)) /locus_tag="TCM_025557" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="RING/FYVE/PHD zinc finger superfamily protein, putative isoform 2" /protein_id="EOY10196.1" /db_xref="Phytozome:POPTR_0013s07550.1" /db_xref="TAIR:AT5G16680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPW6" /translation="MSQKVYTKAESGTCNVCSAPCSSCMHLSTPQMESKSEEFSDDTD RVAVASQYSINEDKAGDSLQPTPSEASNLLSVNSSHDSYSENIESKATIRPSNVSDAS EDVEIQRTFSNAYDGSKGVEGHDDNISCASRASDENAASSYCNKDLDSKNSSRSSASV SSLGSGKVLSSQKLELSELPSIKEEVDAGSTSLRMQSPHSHSQSGKSAVGGSSEISTK IHSKLEADIDSNSGDPADKTDKSLNEDEQDKLNELVELPDKQESPSQAVSGDESYESD ATEHDVKVCDICGDAGREDLLAICSKCADGAEHTYCMREMLQKVPEGDWLCEECKLAE ETESQKQGSDAEGKRANKLSSGTQSLGKRHAENQEGSSAPKRQAVETNMASPKSLSPS RVAALSREGSFKNLDKGKMRPSPQISLGNHSGSDMPETARSPTSGPRLQTPKGTLLKS NSFNNLNIKPKVKLVDEVVLQKQKGAREHASLDSKEESARMMGKSMSFKSTNSGRLNT GESKFKMLSSKYSHVQDLKGLKQVKERISLERKNFSKLDRSSSTVSTPKVDQKQTPRA DTISNSSASNNRESKVVQSDGKPSTLSRSTSSLARKVVENAVTSAVGVSSTNGRISSE QKLNLVSPKEEPSSSSSWTAERQPNNVNGVMSDGLSRSLDSTNQSEKSRESSVGRSRS VPCLKCKEMGHTAEYCSVPQVSAADMSAPRTSREEINKGNKLKAAIEAAIRMRPGICE RPPQDQSPFSNKAKNMIAVEGAHEAQTNVQNQASIGNQKLLNSHSTDAVSVVSSVGNL SMRDISVPLLATVSAITKMSAIPEHEYIWQGAFEVHKSGKLPDFCGGIQAHLSTLASP KVLEVVNTFPHKVSLNEVPRLSTWPAQFHDSGPKEDNIALYFFAKDPESYEKNYKVLL ETMVKNDLALKGNFEGVELLIFPSNLLPENCQRWNTLFFLWGVFKGRRVNCSNSSKSA CIPDASMVRLEGEVSTDIPQPVENEPAACDSSCNVVPVTSTAEKTCILTDKVGDDKVS SLEQTYVGIKAKLEEQDSKIDSRFLSRIATSSTQVHPEMKCTSSPVEESKFPDCRFDT ELKPCLQATETNSGSVKVEKEEVHVREDYPSLKNLPTGKQEAIVVGKIDGDCVRIRDS KDDGYGDGKISSKRDFDSWQLNHRKRPFLDLTETVSEISTDSSQKMPWSEVKRVSVVG VSDNKKLKTGFSGIYQDSSPRDQGPFTDSLASDRHDLGSCSSVEEKICDIACVEKVIP EDLGSSERFFFPMDSHHGREFRLVDNSKPWKEFSAKDEDQAHDVFPNLELALGAETRP PNKGILPFFVGTVDKNSNQDRPLDKVRGKEEEDDVPASLSLSLSFPFPEKEQSLKSVS KTEQLLPERHPVNTSLLLFGGFPDK" CDS complement(join(33416122..33417105,33418027..33418415, 33420280..33420404,33420560..33420790,33420879..33421530, 33421732..33422229,33422313..33422621,33422715..33422809, 33422931..33423016,33423501..33423761)) /locus_tag="TCM_025557" /note="encoded by transcript variant 8; alternatively spliced" /codon_start=1 /product="RING/FYVE/PHD zinc finger superfamily protein, putative isoform 8" /protein_id="EOY10198.1" /db_xref="Phytozome:POPTR_0013s07550.1" /db_xref="TAIR:AT5G16680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPW6" /translation="MQSPHSHSQSGKSAVGGSSEISTKIHSKLEADIDSNSGDPADKT DKSLNEDEQDKLNELVELPDKQESPSQAVSGDESYESDATEHDVKVCDICGDAGREDL LAICSKCADGAEHTYCMREMLQKVPEGDWLCEECKLAEETESQKQGSDAEGKRANKLS SGTQSLGKRHAENQEGSSAPKRQAVETNMASPKSLSPSRVAALSREGSFKNLDKGKMR PSPQISLGNHSGSDMPETARSPTSGPRLQTPKGTLLKSNSFNNLNIKPKVKLVDEVVL QKQKGAREHASLDSKEESARMMGKSMSFKSTNSGRLNTGESKFKMLSSKYSHVQDLKG LKQVKERISLERKNFSKLDRSSSTVSTPKVDQKQTPRADTISNSSASNNRESKVVQSD GKPSTLSRSTSSLARKVVENAVTSAVGVSSTNGRISSEQKLNLVSPKEEPSSSSSWTA ERQPNNVNGVMSDGLSRSLDSTNQSEKSRESSVGRSRSVPCLKCKEMGHTAEYCSVPQ VSAADMSAPRTSREEINKGNKLKAAIEAAIRMRPGICERPPQDQSPFSNKAKNMIAVE GAHEAQTNVQNQASIGNQKLLNSHSTDAVSVVSSVGNLSMRDISVPLLATVSAITKMS AIPEHEYIWQGAFEVHKSGKLPDFCGGIQAHLSTLASPKVLEVVNTFPHKVSLNEVPR LSTWPAQFHDSGPKEDNIALYFFAKDPESYEKNYKVLLETMVKNDLALKGNFEGVELL IFPSNLLPENCQRWNTLFFLWGVFKGRRVNCSNSSKSACIPDASMVRLEGEVSTDIPQ PVENEPAACDSSCNVVPVTSTAEKTCILTDKVGDDKVSSLEQTYVGIKAKLEEQDSKI DSRFLSRIATSSTQVHPEMKCTSSPVEESKFPDCRFDTELKPCLQATETNSGSVKVEK EEVHVREDYPSLKNLPTGKQEAIVVGKIDGDCVRIRDSKDDGYGDGKISSKRDFDSWQ LNHRKRPFLDLTETVSEISTDSSQKMPWSEVKRVSVVGVSDNKKLKTGFSGIYQDSSP RDQGPFTDSLASDRHDLGSCSSVEEKICDIACVEKVIPEDLGSSERFFFPMDSHHGRE FRLVDNSKPWKEFSAKDEDQAHDVFPNLELALGAETRPPNKGILPFFVGTVDKNSNQD RPLDKVRGKEEEDDVPASLSLSLSFPFPEKEQSLKSVSKTEQLLPERHPVNTSLLLFG GFPDK" mobile_element 33430162..33430253 /note="source:scaffold_4_CACTA_0511 5718 5808" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(33430639..33431278) /note="source:CACAO_on_E373_scaffold_1 48 680" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 33430732..33431270 /note="source:CACAO_on_E445_scaffold_2 89 649" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 33432298..33436746 /locus_tag="TCM_025558" /note="dbxref CacaoGD:Thecc1EG025558" mRNA join(33432298..33432544,33434609..33436746) /locus_tag="TCM_025558" /product="Galactose oxidase/kelch repeat superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s05890.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011741t3" /inference="similar to AA sequence:Phytozome:POPTR_0019s05890.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06146t00001" CDS 33434642..33436024 /locus_tag="TCM_025558" /note="paralog of Thecc1EG011741t3" /codon_start=1 /product="Galactose oxidase/kelch repeat superfamily protein" /protein_id="EOY10199.1" /db_xref="Phytozome:POPTR_0019s05890.1" /db_xref="TAIR:AT5G60570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AFC9" /translation="MVFRDSLKETKMNVEGAEYESPVTAGLQGHVSLQPPMSFNHDLR VSQDDWHLLAYILLANKTNMKGVGQGLLDKEVRALTLGYIGLNGKKPLIVARSGENHD GQASDNSLLPGLNDDMALDILARSSRSDYPNLACLNKRFRSLIGSGYLYKLRCQLGVI EHWVYLACNMMPWEAFDPVTEKWMRLPRIPCDECFNYADKESLAVGTELLVFGRELSG FAIWMYSLITHDWSRCPLMNLPRCLFGSSSLGEIAIVAGGSDKYGNVLKSAELYNSEL GTWQTLPDMNFPRKLCSGFFMDGKFYVIGGMSSHVDGLNCGEEYNIETRSWRTIENMY YGNNGGAFHPAMRSPPLVAVVNNQLYAADQATNEVKKYDKINNSWNVVKRLPVRADSS NGWGLAFKACGNSLLVIGAGGHGGRDDGVIILHSWDPERGNRDGPEWDVLAVKERAGA FVYNCAVMGC" mobile_element complement(33436872..33437813) /note="source:CACAO_M_E49279_F74_scaffold_6 995 1936" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(33437691..33438723) /locus_tag="TCM_025559" /note="dbxref CacaoGD:Thecc1EG025559" mRNA complement(33437691..33438723) /locus_tag="TCM_025559" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.14 coverage" CDS complement(33438082..33438441) /locus_tag="TCM_025559" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10200.1" /translation="MARVSSSGRVGGDEDKINVLNSESRAFIKVEGFRSPISKMPWSM KRIRYALRASLQASITADFSPTHCWDFYNSALKLPERNALIMNTVLGKCNRQLGMGKW RPDELQASEVKYYRRDT" gene complement(33438808..33457661) /locus_tag="TCM_025560" /note="dbxref CacaoGD:Thecc1EG025560" mRNA complement(join(33438808..33439056,33442193..33442249, 33442441..33442605,33444505..33444635,33445209..33445280, 33447225..33447311,33447416..33447442,33449745..33449837, 33450562..33450650,33451725..33451803,33452253..33452382, 33454272..33454392,33455053..33455160,33455635..33455735, 33457226..33457537)) /locus_tag="TCM_025560" /product="GPCR-type G protein 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30073.m002310" /inference="similar to AA sequence:Phytozome:GSVIVT01024328001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaL_g10250t00001; inference alignment:Newbler:10:TSA:cgbaL_g10250t00001" mobile_element complement(33440960..33440980) /note="source:scaffold_2_CACTA_0277 4830 4898" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33440981..33441089 /note="source:CACAO_Mariner_E11_scaffold_1 987 1094" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 33440995..33441684 /note="source:CACAO_MITE61_scaffold_4 1 740" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(33441090..33441118) /note="source:scaffold_2_CACTA_0277 4725 4829" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(33442452..33442605,33444505..33444635, 33445209..33445280,33447225..33447311,33447416..33447442, 33449745..33449837,33450562..33450650,33451725..33451803, 33452253..33452382,33454272..33454392,33455053..33455160, 33455635..33455735,33457226..33457440)) /locus_tag="TCM_025560" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="GPCR-type G protein 1 isoform 1" /protein_id="EOY10201.1" /db_xref="Phytozome:GSVIVT01024328001" /db_xref="TAIR:AT1G64990.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XIP7" /translation="MGWGWAICEGMVIIGSLVLLGWAGLWFLNRRLYKEYEEKRALVQ IIFSIVFAFSCNLLQLVLFEIIPLLSREARWINWKVDLFCLILLLVFMLPYYHCYLML CNSGVRKERAGLGAILFLLAFLYAFWRMGIHFPMPSPDKGFFTMPQLVSRIGVVGVTV MAVLSGFGAVNLPYSYLSLFIREIEESEIKALERQLMQSIETCVAKKKKIILCQMEME RIQGSDENLKARSFFKRIVGTVVRSVQDDQKEQDIKILEAEVQTLEEVSKQLFLEIYE LRQAKEAVAYSRTWRGHMQNLLGYAGSVYCVYKMIKSLQSVVFKEAGSVDPVTMSITI LLQFFDIGIDAALLSQYISLMFIGILIAISVRGFLTNLMKFFFAVSRVGSGSSSNVVL FLSEIMGMYFLSSILLIRKSLRTEYRLIITDVLGGDIQFDFYHRWFDAIFVASAFLSL LLLSAHYTSRQADKHPID" mRNA complement(join(33446631..33447011,33447225..33447311, 33447416..33447442,33449745..33449837,33450562..33450650, 33451725..33451803,33452253..33452382,33454272..33454392, 33455053..33455160,33455635..33455735,33457226..33457661)) /locus_tag="TCM_025560" /product="GPCR-type G protein 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400030405" /inference="alignment:exonerate- protein:2:ricco:30073.m002310" /inference="similar to AA sequence:Phytozome:GSVIVT01024328001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1480t7; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1480t7; inference alignment:Newbler:10:TSA:cgbaL_g10250t00001" CDS complement(join(33446799..33447011,33447225..33447311, 33447416..33447442,33449745..33449837,33450562..33450650, 33451725..33451803,33452253..33452382,33454272..33454392, 33455053..33455160,33455635..33455735,33457226..33457440)) /locus_tag="TCM_025560" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="GPCR-type G protein 1 isoform 2" /protein_id="EOY10202.1" /db_xref="Phytozome:GSVIVT01024328001" /db_xref="TAIR:AT4G27630.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XIP7" /translation="MGWGWAICEGMVIIGSLVLLGWAGLWFLNRRLYKEYEEKRALVQ IIFSIVFAFSCNLLQLVLFEIIPLLSREARWINWKVDLFCLILLLVFMLPYYHCYLML CNSGVRKERAGLGAILFLLAFLYAFWRMGIHFPMPSPDKGFFTMPQLVSRIGVVGVTV MAVLSGFGAVNLPYSYLSLFIREIEESEIKALERQLMQSIETCVAKKKKIILCQMEME RIQGSDENLKARSFFKRIVGTVVRSVQDDQKEQDIKILEAEVQTLEEVSKQLFLEIYE LRQAKEAVAYSRTWRGHMQNLLGYAGSVYCVYKMIKSLQSVVFKEAGSVDPVTMSITI LLQFFDIGIDAALLSQVHMETIWVLGYTIVDALFNPMYFTPSVPGFKLETSDLESQFF NLFLFVIIKKFEVPIILDGVASKSQTGC" gene complement(33459000..33464301) /locus_tag="TCM_025561" /note="dbxref CacaoGD:Thecc1EG025561" mRNA complement(join(33459000..33459411,33459488..33459894, 33462449..33462821,33463826..33464301)) /locus_tag="TCM_025561" /product="Growth-regulating factor 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s07500.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s07500.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8493t1" CDS complement(join(33459404..33459411,33459488..33459894, 33462449..33462821,33463826..33464084)) /locus_tag="TCM_025561" /codon_start=1 /product="Growth-regulating factor 5" /protein_id="EOY10203.1" /db_xref="Phytozome:POPTR_0013s07500.1" /db_xref="TAIR:AT3G13960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HEC9" /translation="MNNGGGGGGGGGGGGAGSGGGGGMGTGGGMMAMRSSPFTVSQWQ ELEHQALIFKYMMAGLPVPHDLVLPIQKSFESISHRFFHHPTIECDFAVGYCSFYGKK VDPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVESQTMTQSSSTVTS LTVSGSSGGTGSFQNLPLHAFGSTQGTASGTSQSHYHMESIPYGIPSKDYRYLQGLKP EVGEHSFFSEASGSNRSLQIETQLDNTWPLMQSRVSSYPQSKSSGNPILQNDCPQHSF FSNEFNSGEPVKHEGQSLRPFFDEWPKPRDSWSALEDERSNQTSFSTTQLSISIPMAS SDFSTTSSRSPHDS" gene 33470388..33488265 /locus_tag="TCM_025562" /note="dbxref CacaoGD:Thecc1EG025562" mRNA join(33470388..33470678,33470856..33471059, 33471147..33471321,33471488..33471657,33471759..33471886, 33472337..33472610,33472746..33472823,33473334..33473410, 33473517..33473607,33474190..33474389,33475214..33475283, 33475704..33475789,33476367..33476453,33477638..33477713, 33485052..33485179,33486293..33486466,33487397..33488265) /locus_tag="TCM_025562" /product="Origin recognition complex subunit 3, putative isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT5G16690.1" /inference="similar to AA sequence:Phytozome:GSVIVT01024325001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8490t8" CDS join(33470607..33470678,33470856..33471059, 33471147..33471321,33471488..33471657,33471759..33471886, 33472337..33472610,33472746..33472823,33473334..33473410, 33473517..33473607,33474190..33474389,33475214..33475283, 33475704..33475789,33476367..33476453,33477638..33477713, 33485052..33485179,33486293..33486466,33487397..33487502) /locus_tag="TCM_025562" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Origin recognition complex subunit 3, putative isoform 1" /protein_id="EOY10204.1" /db_xref="Phytozome:GSVIVT01024325001" /db_xref="TAIR:AT5G16690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I729" /translation="MAPSVNDASPPSTINDAVTENNLQPFFVLQKGSVRKTERKLSGT GKTRRRIDLSPELPKNSENLEDEMEEEKMSMRMEAFEFVWSKIESTIKDVLREINTSV FSEIQSWVHQSFDMIRSLGTPDFPQATRSFPIITDANSKKLFTGLVLTKNMEFVDDLL TFEELGKHLKAQGCHVANLSSLDFTAKNGIGGCLRSLLRQFLMSTLDAADISILASWY GEQNYNNPVVVIVDDIERCCGSVLSDFILMLSEWVVKIPVILIMGVATTLDAPRNILP SNALQRLCPFDFTLGIPAERMDAVVEAVLVKPCSGFSIGHKVAVFMRNYFVSQDGTLT SFIRALKIACTQHFYMEPLSFILRDLVLEEDNWEFEIEQYGLSPEVTLKHAFNLPSYQ RVKMTKVTSESLAHALSELKRLQNQWRAVVLCLYETGKGEKVRLLDLFCEANDLESYN RREFDACTKLEKDSVSSPSSRQGPGLIKGGVICEAVRLVRDLSTRQLGKLLKIWENLT VGIMEINGKVKELQSLLKAEDGKSSKKDLIVTPKRHASRIQLNIEDSKSLGDKAAKLL ECMVRDYMQPIECIPFHEIFCFKNVDKLRSALIGDPRRRIQVDLLEFQKLLHCNCCIR GSNALLPSMHDTSIMYNLAQEHGDLINLHDWYQSFKSVVLCPSSSKMKSRPSPLPKKR KDINESENRSEASIQARFCRAVTELQITGLLRMPTKRRPDFAQRVAFGL" mRNA join(33470649..33470678,33470856..33471059, 33471147..33471321,33471488..33471657,33471759..33471886, 33472337..33472610,33472746..33472823,33473334..33473410, 33473517..33473607,33474190..33474389,33475214..33475283, 33475704..33475789,33476367..33476453,33485052..33485179, 33486293..33486503,33487397..33487926) /locus_tag="TCM_025562" /product="Origin recognition complex subunit 3, putative isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT5G16690.1" /inference="similar to AA sequence:Phytozome:GSVIVT01024325001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1019t1_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8490t8; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1014t1" mRNA join(33470649..33470678,33470856..33471059, 33471147..33471321,33471488..33471657,33471759..33471886, 33472337..33472610,33472746..33472823,33473334..33473410, 33473517..33473607,33474190..33474389,33475214..33475283, 33475704..33475789,33476367..33476453,33485052..33485179, 33486293..33486466,33487397..33487926) /locus_tag="TCM_025562" /product="Origin recognition complex subunit 3, putative isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT5G16690.1" /inference="similar to AA sequence:Phytozome:GSVIVT01024325001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1019t5_C2; alternateUTRof:Thecc1EG025562t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8490t8; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1014t1" CDS join(33470985..33471059,33471147..33471321, 33471488..33471657,33471759..33471886,33472337..33472610, 33472746..33472823,33473334..33473410,33473517..33473607, 33474190..33474389,33475214..33475283,33475704..33475789, 33476367..33476453,33485052..33485058) /locus_tag="TCM_025562" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Origin recognition complex subunit 3, putative isoform 2" /protein_id="EOY10205.1" /db_xref="Phytozome:GSVIVT01024325001" /db_xref="TAIR:AT5G16690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I729" /translation="MEEEKMSMRMEAFEFVWSKIESTIKDVLREINTSVFSEIQSWVH QSFDMIRSLGTPDFPQATRSFPIITDANSKKLFTGLVLTKNMEFVDDLLTFEELGKHL KAQGCHVANLSSLDFTAKNGIGGCLRSLLRQFLMSTLDAADISILASWYGEQNYNNPV VVIVDDIERCCGSVLSDFILMLSEWVVKIPVILIMGVATTLDAPRNILPSNALQRLCP FDFTLGIPAERMDAVVEAVLVKPCSGFSIGHKVAVFMRNYFVSQDGTLTSFIRALKIA CTQHFYMEPLSFILRDLVLEEDNWEFEIEQYGLSPEVTLKHAFNLPSYQRVKMTKVTS ESLAHALSELKRLQNQWRAVVLCLYETGKGEKVRLLDLFCEANDLESYNRREFDACTK LEKDSVSSPSSRQGPGLIKGGVICEAVRLVRDLSTRQLGKLLKIWENLTVGIMEINGK VKELQSLLKAEDGKSSKKDLIVTPKRHASRIQLNIEDSKSLGDKAAKLLECMVRL" CDS join(33470985..33471059,33471147..33471321, 33471488..33471657,33471759..33471886,33472337..33472610, 33472746..33472823,33473334..33473410,33473517..33473607, 33474190..33474389,33475214..33475283,33475704..33475789, 33476367..33476453,33485052..33485058) /locus_tag="TCM_025562" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Origin recognition complex subunit 3, putative isoform 2" /protein_id="EOY10206.1" /db_xref="Phytozome:GSVIVT01024325001" /db_xref="TAIR:AT5G16690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I729" /translation="MEEEKMSMRMEAFEFVWSKIESTIKDVLREINTSVFSEIQSWVH QSFDMIRSLGTPDFPQATRSFPIITDANSKKLFTGLVLTKNMEFVDDLLTFEELGKHL KAQGCHVANLSSLDFTAKNGIGGCLRSLLRQFLMSTLDAADISILASWYGEQNYNNPV VVIVDDIERCCGSVLSDFILMLSEWVVKIPVILIMGVATTLDAPRNILPSNALQRLCP FDFTLGIPAERMDAVVEAVLVKPCSGFSIGHKVAVFMRNYFVSQDGTLTSFIRALKIA CTQHFYMEPLSFILRDLVLEEDNWEFEIEQYGLSPEVTLKHAFNLPSYQRVKMTKVTS ESLAHALSELKRLQNQWRAVVLCLYETGKGEKVRLLDLFCEANDLESYNRREFDACTK LEKDSVSSPSSRQGPGLIKGGVICEAVRLVRDLSTRQLGKLLKIWENLTVGIMEINGK VKELQSLLKAEDGKSSKKDLIVTPKRHASRIQLNIEDSKSLGDKAAKLLECMVRL" mobile_element 33478076..33483510 /note="source:CACAO_M_E52950_F1_scaffold_8 1 5386" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(33488886..33489689) /note="source:CACAO_MITE_S26_scaffold_1 1 840" /mobile_element_type="transposon:TIR/MITE" gene 33490307..33492195 /locus_tag="TCM_025564" /note="dbxref CacaoGD:Thecc1EG025564" mRNA join(33490307..33490482,33491098..33492195) /locus_tag="TCM_025564" /product="Nucleotide-diphospho-sugar transferases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s05940.1" /inference="similar to AA sequence:TAIR:AT1G64980.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03432t00001" CDS 33491130..33491894 /locus_tag="TCM_025564" /codon_start=1 /product="Nucleotide-diphospho-sugar transferases superfamily protein" /protein_id="EOY10207.1" /db_xref="TAIR:AT1G64980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XIP8" /translation="MTLANGNAHQVTSNGDVSKTFKIFVGYDPREDLAYEVCQHSILK RSSIPVEITPIVQSDLRKKGLYWRERGQLESTEFSFSRFLTPYLANYDGWAMFVDCDF LYLADIKELTELIDDKYAIMCVHHDYSPKETTKMDGAVQTVYPRKNWSSMVLYNCGHP KNKGLTPEVVNTQTGAFLHRFQWLEDDEIGSVPFVWNFLEGHNKVVENDSTTFPKAVH YTRGGPWFDAWKNCEFADLWLNEMQEYMEKNKFNAI" mobile_element 33494632..33494844 /note="source:scaffold_10_CACTA_0130 7927 8146" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33499549..33499626 /note="source:scaffold_10_CACTA_0138 2348 2422" /mobile_element_type="transposon:TIR/CACTA" gene 33500077..33504228 /locus_tag="TCM_025566" /note="dbxref CacaoGD:Thecc1EG025566" mRNA join(33500077..33500686,33502081..33502250, 33502488..33502592,33502777..33502980,33503223..33503325, 33503666..33504228) /locus_tag="TCM_025566" /product="Gamma-tocopherol methyltransferase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s07440.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s07440.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14537t1" CDS join(33500332..33500686,33502081..33502250, 33502488..33502592,33502777..33502980,33503223..33503325, 33503666..33503769) /locus_tag="TCM_025566" /codon_start=1 /product="Gamma-tocopherol methyltransferase" /protein_id="EOY10208.1" /db_xref="Phytozome:POPTR_0013s07440.1" /db_xref="TAIR:AT1G64970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I728" /translation="MTSAFQASYSPLPYFPRACQRPPVRRPSVSFSSSRTCQSPARFM SIRVNAAASTTSDGSALRDGIAEFYDESSGLWEDIWGDHMHHGFYDPDSNVSGSDNRS AQIRMIEESLRFAGISDDPAKRPKTIVDVGCGIGGSSRYLARKYGAKCRGITLSPVQA GRANVLAEAEGLADRVSFQVADALKQPFPDGQFDLVWSMESGEHMPDKAKFVNELVRV AAPGGKIIIVTWCHRDLLPSEESLQPWEKKLLNRICNAYYLPEWCSTADYVKLLQSLS LQDIKAADWSQHVAPFWPAVIRSALTWKGFTSLLRSGLKTIKGALVMPVMIEGYKKGV IKFAVITCQKPE" gene 33505988..33510572 /locus_tag="TCM_025567" /note="dbxref CacaoGD:Thecc1EG025567" mRNA join(33505988..33506273,33507800..33508037, 33508110..33508211,33509082..33509814,33510365..33510572) /locus_tag="TCM_025567" /product="Intracellular protein transport protein USO1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024321001" /inference="similar to AA sequence:ricco:30148.m001492" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g06434t00001" mRNA join(33505988..33506273,33507800..33508037, 33508110..33508211,33509082..33510328) /locus_tag="TCM_025567" /product="Intracellular protein transport protein USO1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024321001" /inference="similar to AA sequence:ricco:30148.m001492" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:PASA:2:TSA:puevd3b024720t1a2; inference alignment:Newbler:10:TSA:cgbaP2_g06434t00001" mRNA join(33506083..33506273,33507800..33508037, 33508110..33508211,33509082..33509814,33509983..33510061) /locus_tag="TCM_025567" /product="Intracellular protein transport protein USO1 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024321001" /inference="similar to AA sequence:ricco:30148.m001492" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07268t00001; inference alignment:Newbler:10:TSA:cgbaP2_g06434t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc744t4" CDS join(33507854..33508037,33508110..33508211, 33509082..33509814,33510365..33510434) /locus_tag="TCM_025567" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30148.m001492" /codon_start=1 /product="Intracellular protein transport protein USO1 isoform 1" /protein_id="EOY10209.1" /db_xref="TAIR:AT4G27620.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q56Y15" /translation="MNTRSGRVSRGQKSKNFQGEGPNWILIAGGALLSTLSIRLGYKL KQALDTKQKDNATTSLKGHGTSDRRRLSGCRLHSNMFSFTQEDDGCFNCISGTESIGE KHPPNGLMLPESEVALPLVTVPTSEFNKDNGVMWASSPDRLELPPKPFHHSNCSDSPC VSESGSDIFSKREVIQKLRQQLKRRDDMILEMQDQIMELQNSLNAQVAHSSHLQAQLD ASNRDLFDSEREIQRLRKAIADHCVGHVSMNEKTTTVTAWPPDIRNGHANGYLDGESN SGSPEKGRGDGERIEMLKREVGELKEVIEGKEYLLQSYKEQKTELSMKIKELQQRLDS QLPNILQMQLSKERPNDKGNEEFWHTCS" CDS join(33507854..33508037,33508110..33508211, 33509082..33509814,33509983..33509998) /locus_tag="TCM_025567" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30148.m001492" /codon_start=1 /product="Intracellular protein transport protein USO1 isoform 3" /protein_id="EOY10211.1" /db_xref="TAIR:AT4G27620.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q56Y15" /translation="MNTRSGRVSRGQKSKNFQGEGPNWILIAGGALLSTLSIRLGYKL KQALDTKQKDNATTSLKGHGTSDRRRLSGCRLHSNMFSFTQEDDGCFNCISGTESIGE KHPPNGLMLPESEVALPLVTVPTSEFNKDNGVMWASSPDRLELPPKPFHHSNCSDSPC VSESGSDIFSKREVIQKLRQQLKRRDDMILEMQDQIMELQNSLNAQVAHSSHLQAQLD ASNRDLFDSEREIQRLRKAIADHCVGHVSMNEKTTTVTAWPPDIRNGHANGYLDGESN SGSPEKGRGDGERIEMLKREVGELKEVIEGKEYLLQSYKEQKTELSMKIKELQQRLDS QLPNILMSYA" CDS join(33507854..33508037,33508110..33508211, 33509082..33509818) /locus_tag="TCM_025567" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30148.m001492" /codon_start=1 /product="Intracellular protein transport protein USO1 isoform 2" /protein_id="EOY10210.1" /db_xref="TAIR:AT4G27620.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q56Y15" /translation="MNTRSGRVSRGQKSKNFQGEGPNWILIAGGALLSTLSIRLGYKL KQALDTKQKDNATTSLKGHGTSDRRRLSGCRLHSNMFSFTQEDDGCFNCISGTESIGE KHPPNGLMLPESEVALPLVTVPTSEFNKDNGVMWASSPDRLELPPKPFHHSNCSDSPC VSESGSDIFSKREVIQKLRQQLKRRDDMILEMQDQIMELQNSLNAQVAHSSHLQAQLD ASNRDLFDSEREIQRLRKAIADHCVGHVSMNEKTTTVTAWPPDIRNGHANGYLDGESN SGSPEKGRGDGERIEMLKREVGELKEVIEGKEYLLQSYKEQKTELSMKIKELQQRLDS QLPNIL" mRNA join(33507990..33508037,33508098..33508211, 33509082..33509814,33510365..33510572) /locus_tag="TCM_025567" /product="Intracellular protein transport protein USO1 isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024321001" /inference="similar to AA sequence:ricco:30148.m001492" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc668t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc744t4; inference alignment:Newbler:10:TSA:cgbaP2_g06434t00001" mRNA join(33507990..33508037,33508110..33508211, 33509082..33509814,33510354..33510572) /locus_tag="TCM_025567" /product="Intracellular protein transport protein USO1 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024321001" /inference="similar to AA sequence:ricco:30148.m001492" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc668t7; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc744t4; inference alignment:Newbler:10:TSA:cgbaP2_g06434t00001" CDS join(33508163..33508211,33509082..33509814, 33510365..33510434) /locus_tag="TCM_025567" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:30148.m001492" /codon_start=1 /product="Intracellular protein transport protein USO1 isoform 5" /protein_id="EOY10213.1" /db_xref="TAIR:AT4G27620.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q56Y15" /translation="MFSFTQEDDGCFNCISGTESIGEKHPPNGLMLPESEVALPLVTV PTSEFNKDNGVMWASSPDRLELPPKPFHHSNCSDSPCVSESGSDIFSKREVIQKLRQQ LKRRDDMILEMQDQIMELQNSLNAQVAHSSHLQAQLDASNRDLFDSEREIQRLRKAIA DHCVGHVSMNEKTTTVTAWPPDIRNGHANGYLDGESNSGSPEKGRGDGERIEMLKREV GELKEVIEGKEYLLQSYKEQKTELSMKIKELQQRLDSQLPNILQMQLSKERPNDKGNE EFWHTCS" CDS join(33508163..33508211,33509082..33509814, 33510354..33510378) /locus_tag="TCM_025567" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30148.m001492" /codon_start=1 /product="Intracellular protein transport protein USO1 isoform 4" /protein_id="EOY10212.1" /db_xref="TAIR:AT4G27620.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q56Y15" /translation="MFSFTQEDDGCFNCISGTESIGEKHPPNGLMLPESEVALPLVTV PTSEFNKDNGVMWASSPDRLELPPKPFHHSNCSDSPCVSESGSDIFSKREVIQKLRQQ LKRRDDMILEMQDQIMELQNSLNAQVAHSSHLQAQLDASNRDLFDSEREIQRLRKAIA DHCVGHVSMNEKTTTVTAWPPDIRNGHANGYLDGESNSGSPEKGRGDGERIEMLKREV GELKEVIEGKEYLLQSYKEQKTELSMKIKELQQRLDSQLPNIFQNTGKCN" gene complement(33510636..33514192) /locus_tag="TCM_025568" /note="dbxref CacaoGD:Thecc1EG025568" mRNA complement(join(33510636..33511641,33513636..33514192)) /locus_tag="TCM_025568" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:TAIR:AT5G17510.1" /inference="similar to AA sequence:Phytozome:GSVIVT01024286001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8499t1" CDS complement(join(33510996..33511641,33513636..33514156)) /locus_tag="TCM_025568" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10214.1" /db_xref="Phytozome:GSVIVT01024286001" /db_xref="TAIR:AT5G17510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PGR6" /translation="MEDAKAMAHQQQQFLLQQQQQQHQQHHQHQQQQFLLLQQLQKQA QQQQQQQQQQQQQQQQQQAISRFPSNIDAHLRTTPGVLHHRPINIQQNPNSSPNPNPN STPNLQQQQQQQQPQQQQQPQQQQQQQQQQQQQKQIRPLNQAELQMAYQDAWRVCHPD FKRPFSSLEDACERLLPYHVVADYEAEEDDRILDSDTTGQMPSRCQQWDHNIAAKVAE FTATFEKQALAFNIISRKRAMGEFRSEERLMVEQALLQEEKKAMLDLRAEIESREKAG REAHEAKLRMAAMVQAEQARAESQAHAEIMARGPIRANALGSQGGNLPIGHDIGEQPQ GVNPDEMMNGWGNNAQRDEKEPSEDFLNDEETENGDTGMQNDWREVGEFDLNSR" mobile_element 33515076..33515227 /note="source:CACAO_M_E153_F88_scaffold_1 259 394" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(33515114..33515369) /note="source:CACAO_M_S_E51603_F76_scaffold_4 4772 5026" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 33515368..33518231 /note="source:CACAO_M_S_E119572_F76_scaffold_9 699 3619" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(33518226..33519519) /note="source:CACAO_M_E57385_F197_scaffold_9 224 1661" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(33521766..33521896) /note="source:CACAO_Mutator_E592_scaffold_3 20467 20582" /mobile_element_type="transposon:TIR/Mutator" gene 33522688..33534960 /locus_tag="TCM_025569" /note="dbxref CacaoGD:Thecc1EG025569" mRNA join(33522688..33522779,33522967..33523075, 33534886..33534960) /locus_tag="TCM_025569" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc2232t6" CDS join(33522722..33522779,33522967..33523075, 33534886..33534910) /locus_tag="TCM_025569" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10215.1" /translation="MKNIQVSAIFMLLLLLYAAGKEVMAKNPPGKTCAETIKLAGCKN DNCLKLCKQTHGFLGWKDF" gene complement(33523132..33535311) /locus_tag="TCM_025570" /note="dbxref CacaoGD:Thecc1EG025570" mRNA complement(join(33523132..33523167,33524663..33524704, 33534941..33535079,33535267..33535311)) /locus_tag="TCM_025570" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.33 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc2232t7_C2" CDS complement(join(33523164..33523167,33524663..33524704, 33534941..33535079,33535267..33535294)) /locus_tag="TCM_025570" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10216.1" /translation="MLLLLLYAAGKEVMAKNPPGKTCADAIKLAGCKNDYCLKLCKQT YGDNIYVKGACLCEQRQPSPKHAPFA" gene 33524294..33526498 /locus_tag="TCM_025571" /note="dbxref CacaoGD:Thecc1EG025571" mRNA join(33524294..33524354,33525999..33526498) /locus_tag="TCM_025571" /product="Uncharacterized protein isoform 2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8514t1; inference alignment:Newbler:10:TSA:cgbaP2_g17599t00001" CDS join(33524297..33524354,33525999..33526171) /locus_tag="TCM_025571" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY10218.1" /translation="MKNIQVWAIFMLLVLLFAAGKEVTAMGLPGKTCASTIKLAGCKN DNCLKLCKQTHGESIYVKGACFGDGCLCLHLC" mRNA join(33525683..33525805,33525999..33526379) /locus_tag="TCM_025571" /product="Uncharacterized protein isoform 1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g17599t00001; inference alignment:Newbler:10:TSA:cgbaP2_g17599t00001" CDS join(33525748..33525805,33525999..33526171) /locus_tag="TCM_025571" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY10217.1" /translation="MKNIQVSTIFMLLLLLFAAGKEVTAMGLPGKTCASTIKLAGCKN DNCLKLCKQTHGESIYVKGACFGDGCLCLHLC" mobile_element complement(33526526..33526772) /note="source:CACAO_M_E57291_F76_scaffold_8 3557 3804" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(33526766..33527158) /note="source:scaffold_4_CACTA_0482 2594 2989" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(33528037..33528098) /note="source:scaffold_10_CACTA_0128 5324 5384" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(33529549..33529659) /note="source:CACAO_M_E49259_F74_scaffold_6 2473 2571" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 33529656..33530359 /note="source:INTACT450_F74_scaffold_1-int 257 960" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(33530348..33530864) /note="source:CACAO_M_E44240_F74_scaffold_5 1 517" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(33531860..33533452) /locus_tag="TCM_025574" /note="dbxref CacaoGD:Thecc1EG025574" mRNA complement(join(33531860..33532949,33533018..33533452)) /locus_tag="TCM_025574" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS complement(33532284..33532601) /locus_tag="TCM_025574" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10219.1" /translation="MLGTSSSDSNQGSVEGRGSFMLFFAFLRCFLLCFCVFVCYVFCD GNIGEFDADYVRPDAGFHQCFFWVFHFGFMWVKGFEVENELRALCIRFWSMGDFSLAE LEG" mobile_element 33533450..33533844 /note="source:scaffold_4_CACTA_0482 2594 2989" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33533838..33534084 /note="source:CACAO_M_E57291_F76_scaffold_8 3557 3804" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(33539070..33540140) /locus_tag="TCM_025576" /note="dbxref CacaoGD:Thecc1EG025576" mRNA complement(join(33539070..33539635,33539727..33540140)) /locus_tag="TCM_025576" /product="Glutathione S-transferase tau 7" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024284001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025577t1" /inference="similar to AA sequence:Phytozome:GSVIVT01024284001" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.46 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc5211t1" CDS complement(join(33539273..33539635,33539727..33540065)) /locus_tag="TCM_025576" /note="paralog of Thecc1EG025577t1" /codon_start=1 /product="Glutathione S-transferase tau 7" /protein_id="EOY10220.1" /db_xref="Phytozome:GSVIVT01024284001" /db_xref="TAIR:AT2G29420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T7H2" /translation="MPEVAGDGQEVKLVGAWYSPYVHRVAWVLKLKGIQYEFVEENLR DLNKKSSFLLDCNPVYKKVPVLLHHGKPIVESLFIIEYIDETWKHNPIFPTDPYDRAM ARFWARLMDEMLLEGSKRALCAEGDQLKKEIEQVSDAMEVLEGMKKGKKFFGGETVGF LDVAFGWTTIWLEAIEEVAGVEFFNRDKYPHLDNWKSEFKQIHVVKDSLFPMEKLVRF FKKYRQSQLKLAAEK" mobile_element 33542489..33542666 /note="source:CACAO_PIF_E31_scaffold_2 4049 4220" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(33542507..33543326) /note="source:CACAO_MITE88_scaffold_5 6 829" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(33543871..33543950) /note="source:INTACT1432F_F101_scaffold_9-int 9828 9906" /mobile_element_type="retrotransposon:LTR/Unclassified" gene complement(33546212..33548757) /locus_tag="TCM_025577" /note="dbxref CacaoGD:Thecc1EG025577" mRNA complement(join(33546212..33546757,33547984..33548037, 33548107..33548275,33548423..33548757)) /locus_tag="TCM_025577" /product="Glutathione S-transferase tau 7" /inference="alignment:exonerate- protein:2:ricco:29634.m002072.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025576t1" /inference="similar to AA sequence:ricco:28408.m000200" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.22 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc5101t1" CDS complement(join(33546395..33546757,33547984..33548037, 33548107..33548275,33548423..33548505)) /locus_tag="TCM_025577" /note="dbxref ricco:28408.m000200; paralog of Thecc1EG025576t1" /codon_start=1 /product="Glutathione S-transferase tau 7" /protein_id="EOY10221.1" /db_xref="TAIR:AT3G09270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T7H2" /translation="MIYDSNEIHIHISEERIIGEMSEMAVDGPVYKKIPVLLHHGKPI VESLFIIEYIDKTWKHNPILPADPYERAMVRSWARLMDETGEGAVVGVPASKFALARL LLEGSKRVLYLEGDQLKKEIEQVSDAMAVLEGMLKGKKFFGGEMVGFLDIAFGWTTVW LEAIEEVAGVEFFNRDKYPHLDNWKNEFKEIHAVKDSLFPMERLVRFFKNNRQSQLKL AAQK" gene 33549745..33553790 /locus_tag="TCM_025578" /note="dbxref CacaoGD:Thecc1EG025578" mRNA join(33549745..33549951,33551494..33551600, 33552499..33553790) /locus_tag="TCM_025578" /product="DNA-directed RNA polymerase subunit beta'" /inference="alignment:exonerate- protein:2:ricco:30148.m001484" /inference="similar to AA sequence:Phytozome:POPTR_0010s22930.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2754t1" CDS join(33551572..33551600,33552499..33553504) /locus_tag="TCM_025578" /codon_start=1 /product="DNA-directed RNA polymerase subunit beta'" /protein_id="EOY10222.1" /db_xref="Phytozome:POPTR_0010s22930.1" /db_xref="TAIR:AT1G13810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HUF1" /translation="MHRSSHTLPCEELAYCFPLNVQLSPCKSRNIRKIGLLVINLKYR RTYSSQSLLEPVSERLITSSQFLNHPSQSSSRQSTCYQKFASETHSILQSSSLQHWFK NWQEQRKQKLTASTFSGAIGFWPCRRAQLWLEKIGAIEPFSGNLATCWSNIKEEEALE RYKLITGNTVSFPEFQVYGKMDAEEGWLAASPDGLVDRFVYGLPLRGVLEIKCPFFGG DMSKASPWRRIPLYCIPQAQGLMEIMDRDWMDFYVWTPKGSSLFRIYRDVEYWDVLKV ALSDFWWKHVQPAKEICSKYVITDPLRELKSLRPAPRHELLSYIVYESKRVVDNSNLL IREINGQLKN" gene 33553660..33557274 /locus_tag="TCM_025579" /note="dbxref CacaoGD:Thecc1EG025579" mRNA join(33553660..33553892,33554113..33554229, 33555856..33555952,33556266..33557274) /locus_tag="TCM_025579" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.89 coverage" CDS join(33553879..33553892,33554113..33554229, 33555856..33555952,33556266..33556289) /locus_tag="TCM_025579" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10223.1" /translation="MEVLRLISPVRGDSFWLFGSGLVTIIRLSSKGDKKPHWRPGIFM KTAYGKSLSNVMRGNTKHKRLMPWILYNQHYEVVAYCIT" gene complement(33556748..33560535) /locus_tag="TCM_025580" /note="dbxref CacaoGD:Thecc1EG025580" mRNA complement(join(33556748..33557036,33558691..33560535)) /locus_tag="TCM_025580" /product="Cytochrome P450, family 87, subfamily A, polypeptide 6, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400001130" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025626t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s08140.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.32 coverage" CDS complement(33558964..33560502) /locus_tag="TCM_025580" /note="paralog of Thecc1EG025626t1" /codon_start=1 /product="Cytochrome P450, family 87, subfamily A, polypeptide 6, putative" /protein_id="EOY10224.1" /db_xref="Phytozome:POPTR_0005s08140.1" /db_xref="TAIR:AT1G64940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HE97" /translation="MVACFFIFIFISISISVLLKLIFNYLTKTRKPSRNLPPGPLLLP IIGNLLLFRKSFNDLQCILQSLHARFGPIITLHFGSRPAIFVDDRFIAHQALVQNGAI FADRPPALDGREQVVITTALHGSTWRVLRRNLTAEMLQSSRVKSYSYARKLVLERLSK LLKVQSKSGDHPVQVMEHFRFSMFSLLVFMCFGDKLEEKKIKEIADVERNLMLSFSQV SMISIWPRATKILFRKQWKKIFELQEKSKDLIVPLILERKKVMEEKLSAGGNQINKYV LSYVDTLLDLQLPEENRNLSVEEILGLCSEFLNGGTDNTSTLLEWIMANLVKYPHIQE KLFMEIKGVMGDDEEMVKEDDLQKMPYLKAVILEGLRRHPPLRFLMPHAVTEDVVLNG YLVPKNGTVNFMIGDMGWDQKLWEDPMSFKPERFLGTDNKDGEGFDITGSKEIKMIPF GAGRRICPGYALAILHLEYFVANLVWHFEWKAVDGDNVNMEEKHEFSVRMKYPLQALI SSRF" gene complement(33562063..33566568) /locus_tag="TCM_025581" /note="dbxref CacaoGD:Thecc1EG025581" mRNA complement(join(33562063..33562649,33563097..33563518, 33564291..33564344,33564426..33564736,33565357..33565764, 33566095..33566561)) /locus_tag="TCM_025581" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s10270.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000735t1" /inference="similar to AA sequence:Phytozome:POPTR_0007s10270.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8555t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc442t5" mRNA complement(join(33562093..33562652,33563100..33563518, 33564291..33564344,33564426..33564736,33565357..33565764, 33566095..33566277)) /locus_tag="TCM_025581" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s10270.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000735t1" /inference="similar to AA sequence:Phytozome:POPTR_0007s10270.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc442t5" mRNA complement(join(33562187..33562521,33563100..33563518, 33564291..33564344,33564426..33564736,33565357..33565764, 33566095..33566568)) /locus_tag="TCM_025581" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s10270.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000735t2" /inference="similar to AA sequence:Phytozome:POPTR_0007s10270.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01635t00002; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc442t5" CDS complement(join(33562450..33562521,33563100..33563518, 33564291..33564344,33564426..33564736,33565357..33565700)) /locus_tag="TCM_025581" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG000735t2" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY10226.1" /db_xref="Phytozome:POPTR_0007s10270.1" /db_xref="TAIR:AT4G37440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NAE8" /translation="MGPDLKLTEKSEAMVKVVLTNKKKGNLAQYQEDKGVQGNMDIEV DVTEHMNCSELEMIDVECQDATEYSSSFDDTESGDENGLVVNDDLEVESPLYDTRLFR SLFDGCDGPLQMGKRRLTDHWRRFIHPLMWRCKWLEVKLHDFKSQALKYERELAKYGQ SEQFEFGKVTFQGFDAELQAFPSRIQKKEVMKRKKRKRVEDTADVASYMSDHNIFSYY ESKKSVVAASALDDDWGEENKTINGYDDVGGWPFFKSRDGDTWSEQILRNIEVLRSRI QKLKTRMDKLMTESPQKFSSINMLSSVVPCDVLNNSRNHLSPEKGDGNSSQCTTSQHE SECDMRDNFMPGSAVSSHGVVAHLPDMIRSMSRRLLEISCENAPGDTFSSQSNLMIRE GPDGSKN" CDS complement(join(33562542..33562652,33563100..33563518, 33564291..33564344,33564426..33564736,33565357..33565700)) /locus_tag="TCM_025581" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG000735t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY10225.1" /db_xref="Phytozome:POPTR_0007s10270.1" /db_xref="TAIR:AT4G37440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NAE8" /translation="MGPDLKLTEKSEAMVKVVLTNKKKGNLAQYQEDKGVQGNMDIEV DVTEHMNCSELEMIDVECQDATEYSSSFDDTESGDENGLVVNDDLEVESPLYDTRLFR SLFDGCDGPLQMGKRRLTDHWRRFIHPLMWRCKWLEVKLHDFKSQALKYERELAKYGQ SEQFEFGKVTFQGFDAELQAFPSRIQKKEVMKRKKRKRVEDTADVASYMSDHNIFSYY ESKKSVVAASALDDDWGEENKTINGYDDVGGWPFFKSRDGDTWSEQILRNIEVLRSRI QKLKTRMDKLMTESPQKFSSINMLSSVVPCDVLNNSRNHLSPEKGDGNSSQCTTSQHE SECDMRDNFMPGSAVSSHGVVAHLPDMIRSMSRRLLEISCENIEGEILIPNQAAKEEL CNFGSAISEQAEKPHISRRS" CDS complement(join(33562542..33562649,33563097..33563518, 33564291..33564344,33564426..33564736,33565357..33565700)) /locus_tag="TCM_025581" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG000735t1" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY10227.1" /db_xref="Phytozome:POPTR_0007s10270.1" /db_xref="TAIR:AT4G37440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NAE8" /translation="MGPDLKLTEKSEAMVKVVLTNKKKGNLAQYQEDKGVQGNMDIEV DVTEHMNCSELEMIDVECQDATEYSSSFDDTESGDENGLVVNDDLEVESPLYDTRLFR SLFDGCDGPLQMGKRRLTDHWRRFIHPLMWRCKWLEVKLHDFKSQALKYERELAKYGQ SEQFEFGKVTFQGFDAELQAFPSRIQKKEVMKRKKRKRVEDTADVASYMSDHNIFSYY ESKKSVVAASALDDDWGEENKTINGYDDVGGWPFFKSRDGDTWSEQILRNIEVLRSRI QKLKTRMDKLMTESPQKFSSINMLSSVVPCDVLNNSRNHLSPEKGDGNSSQCTTSQHE SECDMRDNFMPGSAVSSHGVVAHLPDMIRSMSRRLLEISCENVEGEILIPNQAAKEEL CNFGSAISEQAEKPHISRRS" gene complement(33567087..33588491) /locus_tag="TCM_025582" /note="dbxref CacaoGD:Thecc1EG025582" mRNA complement(join(33567087..33567866,33588377..33588491)) /locus_tag="TCM_025582" /product="Cytochrome P450, family 87, subfamily A, polypeptide 9, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025580t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s08140.1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(33567160..33567600) /locus_tag="TCM_025582" /note="paralog of Thecc1EG025580t1" /codon_start=1 /product="Cytochrome P450, family 87, subfamily A, polypeptide 9, putative" /protein_id="EOY10228.1" /db_xref="Phytozome:POPTR_0005s08140.1" /db_xref="TAIR:AT3G03470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HE97" /translation="MHCQNSEDIIMDGYVVPQYGTVNFIVGDMGLDPKVWEDPMSFKL ERFLSDENDGKTFDITRSKEIKMIPFGAGRRICPGHALAMLHLEYFVANPVWSFEWKA VDGDDFNMEAKQGFVVTIKKALQANLLPRFWRKLLLYILIFSTF" gene complement(33569064..33570530) /locus_tag="TCM_025583" /note="dbxref CacaoGD:Thecc1EG025583" mRNA complement(33569064..33570530) /locus_tag="TCM_025583" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is medium, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.37 coverage" CDS complement(33570044..33570421) /locus_tag="TCM_025583" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10229.1" /translation="MSQAMGSASGLLSWWDEEFFKMEKVIMDQRFILTVGSMNGLNLR VRIGNIYVHNVDSEGDALWETLRGIFSEENVPWCIGANFNVVRYAEKRIGVESKKKPM VEFAEFIEDCGFTDLPMTRGKYT" mobile_element 33572245..33572365 /note="source:CACAO_M_E57346_F74_scaffold_9 1381 1516" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(33572264..33572359) /note="source:INTACT726_F314_scaffold_5-int 13749 13842" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(33572362..33572612) /note="source:INTACT726_F314_scaffold_5-int 13539 13794" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(33573680..33574020) /note="source:INTACT674_F296_scaffold_6-int 5539 5879" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(33573715..33575024) /note="source:CACAO_M_S_E16721_F36_scaffold_2 17787 19085" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 33579219..33579289 /note="source:scaffold_1_CACTA_0009 4889 4962" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(33579744..33580498) /note="source:INTACT405F_F91_scaffold_4-int 6897 7615" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(33580434..33580506) /note="source:CACAO_M_E49759_F82_scaffold_7 2510 2582" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 33580607..33581841 /note="source:CACAO_M_E12330_F85_scaffold_3 821 2057" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(33581942..33583178) /note="source:CACAO_M_E36614_F323_scaffold_5 2 1235" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 33588665..33600212 /locus_tag="TCM_025584" /note="dbxref CacaoGD:Thecc1EG025584" mRNA join(33588665..33591975,33592608..33593057, 33593180..33593881,33594225..33595055,33595594..33596112, 33597062..33597763,33598108..33598941,33599481..33599999, 33600076..33600212) /locus_tag="TCM_025584" /product="NB-ARC domain-containing disease resistance protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma18g46050.1.4" /inference="similar to AA sequence:ricco:30128.m008690" /note="quality class is medium, express is medium, homology is paralog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.41 coverage; inference alignment:Newbler:10:TSA:cgbaB_g14415t00001" CDS join(33589087..33591975,33592608..33593057, 33593180..33593881,33594225..33595055,33595594..33596112, 33597062..33597763,33598108..33598941,33599481..33599999, 33600076..33600180) /locus_tag="TCM_025584" /note="dbxref ricco:30128.m008690" /codon_start=1 /product="NB-ARC domain-containing disease resistance protein, putative" /protein_id="EOY10230.1" /db_xref="TAIR:AT4G27190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9REY6" /translation="MEIVATCSSSFATEVAKVVPIKRHVSYILDRQKNLEDFKKKAKQ LEDERESVKHAVEAAERNGEKIELGVRKWLISVDQKIKEYDEKVRALEDKAKERCFNA LCPNVKFYYRLGKKAQEHAKVVAELLEQGRFDRISYRPAPEGIGTMSNNYYEAFQSRG SILEGIMENLRDPILKMIGVYGMPGVGKTMLVKEVARTVREEYLFDEVVMATITHNPN ITNIQGEIADMLGLRFDEESESGRAMRLRQRLRSDKKVLVILDDIWAKLDLDAIGISL EDDKNIAPDENEGSIMQNIAPDENQGSIMQNIDGSSLEKVSTVKSKILLTSRNLDVLC RMDAEKKFECRILSREEAMTLFVRIVGDVVHNPSYKPIANQVVEKCAGLPVAVSTIAN TLKGMNLDIWENALRQLKRSNATNIEGMEEGVYSIIELSYERLKEEAQSLFRFCALYR QGSDIPIRNYLLRHHLGLDLLEGVRTLEEARKSVSDLVHKLKSSSLLLSGCNDEFVKM HDIVRDVSISIASQENQMFVIEEGIRMKDLLKKGKLNNCTALSLPYGDIHQELPKVLE CPKLKLFLLTEDDDRQSEVPDTFFEKMNDLQVLQLNGMRFPSLPSSFLSLTNLQTLCL DFCALSDIALIANLKKLDILSLCSSKIKQLPNEIAQLTQLRLLDLSNCFKLEVIPANI LSSLTCLEELHMGNSFNRWDVEGNASLVELKNLDRLTTLDVHIRDAQSLPKDLFSETK LERYKIFVGEALWDWFDKHKYSRTLKLMPNTRINWDRGIRMLLTRTEDLYVNEVQGVK SSLHELGETGFPHLKNVHVENNSEIQYIINSIRGISCEAFPLLESLFLHNLSNLKNIS HAQIYVECFRSLKIIKVINCDSLKNLFSFSLAEKLFQLQEIEVTDCKNIVDIIGADRE RDNEATDQIELRELRSITLQCLPQLINFRFQEKKHSTTSSIASPLFTGKMAFPLLENL KVSSINIERIWPYQLPRVSYSMQNLTSLIIEGCDNLRDVLSYSMAESLQQLKSFEVID CRCIQQIVAMEEIKEGGNRATVSFPRLISLKLKDLHKLIGFCHENYFLEFPSLKILEI KRCLELKGFINVCIGSTTEVLFNEQVAFPNLERMTISHLRNVKRLWYNQLHTNSFCKM KELKAEYCDELLNIFPSFVLGIFHKLETLRVTDCGSLEEVFELQAQGLEIKDTCVVAF HLKELMLFRLPKLKHVWNKDPQGNISFQTLRVVNVRKCWSLKSLFPFSIAKGLPQLES LLVQQCGVEEIVSKNEGLEQEIRFEFNQLSFLKLWKLTNLKCFYPGMHTIVWPVLKNL KTHGCEEIKIFGQLEAHIQKSLFVIEKIIPQLEEVSFSSDDIAMICDGQFASHFFCHI KLLQITCYLDESAVLPVFFLQRFYNLEMLQVFGCNFKELSPYERNVGKDKEVRMLSKL RKLKLDSLQKIIHVWKRDSPLGHMCASLETLEVWKCDSLINLGVSSASFDNLISLDVW KCKGIVELITSSEAQSLVRLVTMRIRECEMMKEVVGREEDESTYEIIFRELKHVELHC LPSLRSFCSGNSSFKFPSLEQVIVSQCPRLKSFCLGALSTPKLQRVQLESTDYKGRWA GDLGATVKQLHQEKVGYQCLKHLKLSEFPELVDIWNGNPQEILDLKNLEFLEFCNSDN LGCIFNLSMALSLVRLQQLEIKKCNKMEAVIKEDGSVLDQKTRTDKIIIFPCLKSIFI EHCPDLTSFCWGSPILMECPSLKIIEVAHCPNMTTFVSIFPRDEEKNARIGDGTDRKE DDLEILPAFFCDKVVFPNLEKMTISHLRNVKRLWFNQFHADSFCKMKELKVEYCDELL NIFPSFVLGVFQRLEMLRVTDCGSLEEVFELGAQGLEIKDTCVLALQLKELYLYRLPK LKRVWNKEPQGDISFQTLHVVKVRECWSLKSLFPFSIAKGLPQLERLLVQQCAVEEIV SKNEGLEQEIRLEFNQLSFLKLWKLTNLKCFYPGMHTIVWPVLKNLKTHGCEEVKIFG QLESHIEQSLFVIEKIIPQLEEVSFSSDDIAMICDGQFASHFFCHIKLLQITCYLDES AVLPVFFLQRFYNLEMLQVFGCNFKELSPYQGNFSEDKEVRMLSKLRKLKLDSLQKIT HLWKRDSPLGHMCASLETLEVWRCDSLINLGVSSASFDNLISLDVWKCKRIVELIKFS EAQSLVHLVTMRIRECEMMKEVVESERDDESTYEIIFRELKHVELHCLPSLGSFCSGN SSFKFPSLEQVIVSQCPRLKSFCLGALSTPKLQRVQLESTDYKGRWAGDLGATVEHLH QEKVGYQCLKHLKLSEFPELVDIWNRNPQEILDLKNLEFLEFCNSDNLGCIFNLSMAL SLVRLRQLEIKKCNKMEAVIKEDGSVLDQEARKDKIVIFPCLKSIFIVCCPDLTSFYL GNPTLMECPSLKKIEIAHCPNMTTCGSIFPRDEEKNARIGDGIERNEDDLEILPAFFC DKYLLLDLISSCASFSILKSNFLTITHFAFHIYPFI" gene complement(33599706..33611240) /locus_tag="TCM_025585" /note="dbxref CacaoGD:Thecc1EG025585" mRNA complement(join(33599706..33600569,33611108..33611240)) /locus_tag="TCM_025585" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.16 coverage" CDS complement(join(33600379..33600569,33611108..33611165)) /locus_tag="TCM_025585" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10231.1" /translation="MGQLLNCSKQNSRDLTKNIEPLRKMAGERRKAPKFEPITGQREK TQLVDEGTFKEVVLEKNKCATKEIGHKDSIAQVILKEH" gene 33603955..33612426 /locus_tag="TCM_025586" /note="dbxref CacaoGD:Thecc1EG025586" mRNA join(33603955..33604082,33604423..33605162, 33611524..33612426) /locus_tag="TCM_025586" /product="Phosphoprotein phosphatase" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025584t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s01730.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.35 coverage" CDS join(33604563..33605162,33611524..33612381) /locus_tag="TCM_025586" /note="paralog of Thecc1EG025584t1" /codon_start=1 /product="Phosphoprotein phosphatase" /protein_id="EOY10232.1" /db_xref="Phytozome:POPTR_0013s01730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9REY6" /translation="MKELKAEYCDELLNIFPSFVLGVFYKLEILRVTDCGSLEEVYEL QAQGLEIKDTCVVAFQLKEMRLFRLPKLKHVWNKHPQGNISFQTLRIVDVWECWSLKS LFPFSIAKGLPQLERLIVQECGVEEIVSKNEGLEQEIRFEFNHLSFIKLWILRSLKCF YPGKHTAMWPVLKKLRIHRCGKIKILGQLESLIQQPLMEKVIPQLEEALISSDEIAKI CDGPYSEKLFCHLKVLWVSYYLNESVVSSFSFLRRFYNLEALYVLHGNFKELSLYEGN FGEEKEVWMLPKIKKLHLEYLCKVTHLWKQESLLGHICASLETLEVWNCDSLINLGSS SASFENLTTLDVWKCKGIIELITSSKAQSLVRLVQMRIRECEMVKEVVASEGDDEATY EIIFRELKRLELHCLASLRSFCSGNYTLKFPSLEQVIVSQCPRLNSFCHGALSTPKLQ RVQLEPTHYKGRWIGDLNATVEQLYEEKVCYLIFF" mobile_element complement(33607197..33609770) /note="source:CACAO_M_S_E84714_F74_scaffold_7 39 2594" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 33614626..33618739 /locus_tag="TCM_025587" /note="dbxref CacaoGD:Thecc1EG025587" mRNA join(33614626..33615462,33615997..33616830, 33616981..33617061,33617233..33617691,33618515..33618739) /locus_tag="TCM_025587" /product="Phosphoprotein phosphatase" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025584t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s12980.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.39 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc5807t3" CDS join(33614857..33615462,33615997..33616830, 33616981..33617022) /locus_tag="TCM_025587" /note="paralog of Thecc1EG025584t1" /codon_start=1 /product="Phosphoprotein phosphatase" /protein_id="EOY10233.1" /db_xref="Phytozome:POPTR_0019s12980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9REY6" /translation="MKELKVEYCDELLNIFPSFVLGVLHKLEILRVTDCGSLEEVFEH HDQGLETKDTCVVAFQLKELILFRLPKLKHVWNKDPQGNISFQTLRKVKVRGCWSLKS LFPFSIAKGLPQLESLLVEESGVEEIVSKNEGLEQEIWFEFNQLSFLKLWQLTNLKCF YPGMHTTVWPVLKKLWTYCCGKIKIFGQLESHIQQPLFLIEKVIPQLEEVSFRSDDIA MICDGQFPSDFFCHMKLLQITCYLDESAVFPFFFLQRFYNLEVLGVIGCNFKELSPYE GNCSEDKEVRMLSKLRKLKLDSLQKIIHLWKQESPLGHMCASLETLEVWRCDSLINLG ASSAPFDNLISLDVWKCRGIVELITSSKVQSLVRLVTMKIRECEMMKEVVASDEDDES TYEIIFRELKHVELHGLPSLRSFCSGNYSFNFPSLEQVIVSECPSLKSFCRGALSTPK LERVQPKRTDYKGRWAGDLDATIEQLYMEQNVQISEEKTEGTI" gene complement(33618741..33634737) /locus_tag="TCM_025591" /note="dbxref CacaoGD:Thecc1EG025591" mRNA complement(join(33618741..33619566,33619781..33620114, 33624237..33624407,33624501..33624783,33634262..33634737)) /locus_tag="TCM_025591" /product="Cytochrome P450" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0177s00220.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025626t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(join(33618778..33619566,33619781..33620114, 33624237..33624407,33624501..33624700)) /locus_tag="TCM_025591" /note="paralog of Thecc1EG025626t1" /codon_start=1 /product="Cytochrome P450" /protein_id="EOY10234.1" /db_xref="TAIR:AT1G64940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HE97" /translation="MPYPMALILEGLRRYPPAHFVLPHRVTEDAVLNNFLVPRKGIVN FFIAELGWDPKVWEDPIAFRLERRMCPAYGLAMLHLEYFVANLVLSFEWKSVDGDDID LSEKQELTTVMKNPLQAHIYPRNLHSKFGRIVRIGSHPAIFVSDRSLNHQALIQNGAI FADRSSALTTGGIASSNQHTINTAAYGPLWGILRRSLTSEILNPSRAKSYSPARKWVL QVLRKQLTLKVGDAILVEDILIPLIMARKKVKEDKEVKYEGEHILSYVDTLLDLQLPE EKRKLDEGEIVSLCSEFLNAGTDTTSTALHWIMSNLVKYPHIQEKLFMEIRRVVGDGE EVKEDDLQKMPYLKAVILEGLRRHPPAHFLLPHRVTEDIVLNHILVPREGTVNFFTAE VGWDPKVWDDPVVFKPERFVSSDGGEEMFDITGSTEIKMIPFGAGRGICPAYGLAMLH LEYFVANLVWFFEWRPVDGDDIDLSDTEEFTIVMKNLLQACMYPRLR" mobile_element 33622226..33623883 /note="source:CACAO_M_E42801_F60_scaffold_5 1 1692" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(33625883..33628843) /note="source:CACAO_M_E69760_F9_scaffold_9 6700 9648" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 33628737..33628857 /note="source:CACAO_M_S_E52921_F60_scaffold_5 16428 16546" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 33628836..33628970 /note="source:scaffold_5_CACTA_0615 2482 2616" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33628948..33629045 /note="source:scaffold_5_CACTA_0615 2514 2615" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33629024..33629128 /note="source:scaffold_5_CACTA_0615 2514 2627" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(33630378..33630421) /note="source:CACAO_M_E73089_F74_scaffold_10 3478 3521" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 33630711..33633505 /note="source:scaffold_5_CACTA_0615 1 2679" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33633483..33633566 /note="source:scaffold_5_CACTA_0615 2514 2600" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(33634931..33635086) /note="source:scaffold_6_CACTA_0710 4429 4582" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33634970..33635098 /note="source:INTACT19F_F94_scaffold_1-int 15742 15873" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 33635725..33635776 /note="source:scaffold_5_CACTA_0615 2365 2417" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33641186..33641249 /note="source:scaffold_6_CACTA_0710 15935 16003" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33641562..33645735 /note="source:scaffold_6_CACTA_0710 138 4289" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(33645726..33645749) /note="source:scaffold_5_CACTA_0611 6018 6035" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(33645750..33647710) /note="source:CACAO_M_E73030_F79_scaffold_10 829 2768" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 33647720..33648403 /note="source:INTACT465_F78_scaffold_6-int 6589 7273" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 33648748..33648937 /note="source:scaffold_6_CACTA_0710 15828 16003" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33649121..33649391 /note="source:CACAO_on_E33_A_scaffold_3 2913 3173" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(33649418..33649528) /note="source:CACAO_on_E33_A_scaffold_3 7608 7737" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 33651355..33651392 /note="source:scaffold_5_CACTA_0615 2 39" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33653370..33653477 /note="source:scaffold_5_CACTA_0611 7629 7723" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33653678..33653976 /note="source:CACAO_M_E86045_F74_scaffold_12 1701 1987" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(33655988..33658758) /note="source:CACAO_on_E732_scaffold_9 134 2914" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(33657103..33661320) /locus_tag="TCM_025594" /note="dbxref CacaoGD:Thecc1EG025594" mRNA complement(join(33657103..33657738,33657838..33658053, 33660498..33661071,33661217..33661320)) /locus_tag="TCM_025594" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene20237" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014176t1" /inference="similar to AA sequence:Phytozome:Glyma18g24960.1" /note="transcript variant 1; alternatively spliced; quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Newbler:10:TSA:cgbaL_g06165t00001_G4" mRNA complement(join(33657104..33657738,33657838..33658024)) /locus_tag="TCM_025594" /product="Uncharacterized protein isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014176t1" /inference="similar to AA sequence:Phytozome:Glyma18g24960.1" /note="transcript variant 2; alternatively spliced; quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g06165t00001_G4" CDS complement(join(33657551..33657738,33657838..33658053, 33660498..33661071,33661217..33661258)) /locus_tag="TCM_025594" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG014176t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY10235.1" /db_xref="Phytozome:Glyma18g24960.1" /db_xref="TAIR:AT5G35695.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BND9" /translation="MALGWKWLIPAPPSIQPSPKIIFSLNTPSSSPLSATLPPCSSPL SVSHPSSVFISSLSWSSSSLLAVGLPLALTRGSAPLSQLWVFPSLSTALSRGSSPRSQ PLSAVGLPLSLSRGSAPLSQPFTRRSAPLSQPLSPVGLPLSLNLSPMGLPLSLSRSPV GLPLSLSRSHPWVCPSLSAALTRGSAPLSQPLSPVFPSLSVVHSGGALDGTYIRVKVP SADKPRYRTRKGNIATNMLGVCTPDMQFVFVLLGWEGSVADGRVLRDALRRRNGLKVP NGCYYLVDAGYTNCEGFLAPFRGQRYHLNEWRQGHEPSSPEEFFNMKHAAARNVIERC FGLLK" CDS complement(join(33657551..33657738,33657838..33657964)) /locus_tag="TCM_025594" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG014176t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY10236.1" /db_xref="Phytozome:Glyma18g24960.1" /db_xref="TAIR:AT5G35695.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BND9" /translation="MLGVCTPDMQFVFVLLGWEGSVADGRVLRDALRRRNGLKVPNGC YYLVDAGYTNCEGFLAPFRGQRYHLNEWRQGHEPSSPEEFFNMKHAAARNVIERCFGL LK" mobile_element complement(33661385..33662907) /note="source:CACAO_M_E44258_F10_scaffold_5 1455 2968" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 33662899..33666468 /note="source:INTACT228_F18_scaffold_4-int 1394 4958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 33666659..33666922 /note="source:INTACT153_F18_scaffold_9-int 210 456" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 33667307..33668268 /note="source:INTACT639F_F363_scaffold_5-int 7455 8452" /mobile_element_type="retrotransposon:LTR/Copia" gene 33669218..33669854 /locus_tag="TCM_025598" /note="dbxref CacaoGD:Thecc1EG025598" mRNA 33669218..33669854 /locus_tag="TCM_025598" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01001503001" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8575t1" CDS 33669315..33669758 /locus_tag="TCM_025598" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10237.1" /translation="MNGTEISILKPPNEISFSGLLKSNDSAALEPQINLEILSDFSHQ PLERKLPDQELGTLLVLSDFSQSHSSWPETVTFLHSSGCRSRYSLEILRDFSHQPLER KLPDQKLGTLLVLSDFSQSHSSWPETMRLLHSSGYRSRFVRGLCG" mobile_element complement(33670289..33670650) /note="source:CACAO_M_S_E16721_F36_scaffold_2 4130 4490" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 33670646..33670907 /note="source:scaffold_6_CACTA_0700 7167 7430" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33673598..33674335 /note="source:scaffold_3_CACTA_0378 1732 2511" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33674336..33674509 /note="source:INTACT639F_F363_scaffold_5-int 8393 8582" /mobile_element_type="retrotransposon:LTR/Copia" gene 33674478..33680101 /locus_tag="TCM_025600" /note="dbxref CacaoGD:Thecc1EG025600" mRNA join(33674478..33677527,33677634..33677701, 33678201..33678291,33678712..33679179,33679288..33680101) /locus_tag="TCM_025600" /product="NB-ARC domain-containing disease resistance protein, putative" /inference="alignment:exonerate- protein:2:ricco:30128.m008690" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025620t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s04430.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.27 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8563t1" CDS join(33675008..33677527,33677634..33677701, 33678201..33678291,33678712..33679179,33679288..33680058) /locus_tag="TCM_025600" /note="paralog of Thecc1EG025620t1" /codon_start=1 /product="NB-ARC domain-containing disease resistance protein, putative" /protein_id="EOY10238.1" /db_xref="Phytozome:POPTR_0005s04430.1" /db_xref="TAIR:AT4G27190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NCG3" /translation="MEIPTGSAGNLVSEIAKFMFLQIKRRISYVFHHQRRVETFEEKV QRLKERRDRVQHDVNAAKRNAEKIEIGVENWLIEVDKIINERAKEMKDLEDKARNKCF IGLCPNFKSRYQLSKESEKDANAVDELLQQGEFDKVSYRDLPRAIVDASPKDFEAFDS RKQVFNEIMEVLKHPSINIIGVYGTGGVGKTTLVKEVAKKVKGDKLCDVVVMADVTQT LDIQKMQDQIAESLGLKLEEKSVAIRASRLHERLKEEKKILVVLDDIWARLDLKEVGI PIADEHEGCNILLTSRDLNVLLNGMDAQKTFLIDVLKEEEAWDLFKKMAGNSAESPEL RSIATKVAEKCAGLPIAISTVARALRNKALFEWKDALRQLQRPSSSNFCGVPADAYAA IELSYNHLKDEELKQAFLLCSLLGHNALIQDMLKYSMGLGLFSSVNTVEEARDRLLTV VSNLKTSCLLLDSYTDQCFDMHDLIRDVAISIASRENRVFALNKEDVQKDWPNVEAMK NCDKISLRYASISKLPDQLKCPKLTFFYMGSRDPSMEMPTNFFNETKNLKVLDLTKMH FLSLPSSISLLSNLGTLCLDQCVLGDIAIIGELKNLEILSLLKSHIEMLPKEIGQLIK LKLLDLTGCTKLKIILPNILSSLSRLEELYMGNSFVQWETEGHTQRSNASLAEFKALS CLTALDVHIPNAKIIPRDLFFEKLQRYKIFIGEAWDWDGQIEYSTLKLQLNTSIRYLN YGLKMLLNKVEHLHLYEMTGVKILLFESEHKECFRQLKNLHIQNGAMIQYIIKHNDVD KIEFLQLHSLTLHGLPKLVSFCSGCDDSTSISPKELPLFNDKDKGSTMLYLFFYKLLY DSYCLSWFQPELNFCIGAVLFVGAANFILSRLYYFAIIMFPKLEKLKLSSINIERIWH YQLPSGSYSMQNLTSLIIEGCDNLKHVLSCSMAECLQQLKSFEVIDCRCIQEIVATEE IKEDGKRATISFPLLNSLKLKALQKLIGFCHENYFLEFPSLKILEIEHCLKLKGFINK SMSKDITIGSTTEALFNEQVAFPNLEKVTISHLRNVKRLWFNQLHADSFYKMKELKVE YCDELLNIFPSFVLGAFQRLEILRVTDCGSLEEVFEHQVHGLEIKDTCDVALQLKEMY LFRLPKLKHVWNKDPQGNISFQALRVVDVWKCWSLKSLFPFSIAKGLPQLESLEITSS GVEEIVSKNEGLEQEIRFEFNQLSFLSLWNLTNLKCFYSGRHTTVWPALKNLKTHRCG KIKILGQLESHIQQPLFHIEKVQSLYSSFGDVHTFYLTHPLPQ" mobile_element complement(33680702..33680803) /note="source:CACAO_PIF_E119_scaffold_3 2173 2275" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 33686849..33686903 /note="source:scaffold_2_CACTA_0279 6982 7034" /mobile_element_type="transposon:TIR/CACTA" gene 33689675..33690607 /locus_tag="TCM_025604" /note="dbxref CacaoGD:Thecc1EG025604" mRNA join(33689675..33690390,33690532..33690607) /locus_tag="TCM_025604" /product="Phosphoprotein phosphatase, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01023548001.5" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025587t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s04360.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.34 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc357t11" CDS join(33689731..33690390,33690532..33690573) /locus_tag="TCM_025604" /note="paralog of Thecc1EG025587t1" /codon_start=1 /product="Phosphoprotein phosphatase, putative" /protein_id="EOY10239.1" /db_xref="Phytozome:POPTR_0005s04360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9REY6" /translation="MLAVLDCNFKELSPYGGNVIEENEVRMPSKIRNLMLDYLPKIIH LWKQDSPLDHICASLETLKVWRCNSLINLASSSTSFQNLTTLDVWNCKEIAELITASK VQSLVHLVEMTIRKCETMKEVVADEGDDEATYEIIFRELKRLELQCLPSLRSFCTGNY TFRFPSLEQVIVSECLSLKSFCQGALSTPKLERVQLNRTDSEGRWAGDLGATIEQLYM EQNVQISEEKTEDTI" mobile_element 33691402..33691457 /note="source:scaffold_9_CACTA_0927 15084 15140" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(33691558..33692125) /note="source:scaffold_1_CACTA_0009 13282 13829" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33691855..33695816 /note="source:CACAO_M_E33977_F20_scaffold_4 5405 9331" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 33695568..33695846 /note="source:CACAO_Mutator_E1410_scaffold_6 5707 5986" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(33695938..33696048) /note="source:CACAO_Mutator_E1410_scaffold_6 5290 5373" /mobile_element_type="transposon:TIR/Mutator" gene complement(33696050..33707070) /locus_tag="TCM_025607" /note="dbxref CacaoGD:Thecc1EG025607" mRNA complement(join(33696050..33697316,33697403..33697457, 33697671..33698220,33698567..33698681,33698899..33698974, 33699078..33699149,33699229..33699299,33699374..33699500, 33699570..33699661,33699751..33699903,33700005..33700084, 33701133..33701196,33702670..33702966,33703111..33703411, 33706780..33707070)) /locus_tag="TCM_025607" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028109t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s08140.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.16 coverage; weak similarity to Cytochrome P450, family 87, subfamily A, polypeptide 6" mobile_element complement(33696261..33698282) /note="source:CACAO_Mutator_E1888_scaffold_9 2138 4948" /mobile_element_type="transposon:TIR/Mutator" CDS complement(join(33696837..33697316,33697403..33697457, 33697671..33698220,33698567..33698681,33698899..33698974, 33699078..33699149,33699229..33699299,33699374..33699500, 33699570..33699661,33699751..33699903,33700005..33700084, 33701133..33701196,33702670..33702966,33703111..33703411, 33706780..33706829)) /locus_tag="TCM_025607" /note="paralog of Thecc1EG028109t1; weak similarity to Cytochrome P450, family 87, subfamily A, polypeptide 6" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10240.1" /db_xref="Phytozome:POPTR_0005s08140.1" /db_xref="TAIR:AT1G64940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HE97" /translation="MMGWDARSRNLGPIFPRAKKKVKEENLSKEKKDKKIEDKEEHIV SYVDTLLDLKLHEEKRKLDEGEMVSLCSEFLNTSIDTTSTVLHWIMANLVKYPHVQEK LFEKIKGVVGDGKEEGIVNFFIAEMGWDPKVWEDLMAFRLNRFLNSDGGEEVFNITGS KEIKMIPFGARRRMCLAYGLAMLHLEYFVASLILSFEWKVVDGDDIDLLEKQEFTMTV FSCWFDGCWGLVIVVLGVLGFEVPDSSVTKETQLRYNIYGFAWVIQFWAMEAILALQK IVAPFGPKDNVYPRMCRWDCNQKSKDFYKAIKKLESSDHLWALESLEPTADEAFLEYF MDVHVPLSEGHDLKKKRTYGGTKRMRIVAALVDELSGPELMDEGDDRGQGSEQPFDHA PAAPEPPLVLLKCIIEMTCRLRKRRQVLKYRSVQLNRRQLMSRRSSSTDRSGYTTDSK RADDKDIKVVTLTQSRIVNDEVVTTRQLRRMVRKHEKEMLELKASIQSLSGPSHGVGL EHDDANDGQHHEPGVDIDDDVFGANGNHVTHVDDVINEAVVVDVTFQSDDVEGEHVPL LESIIDASAGGDGEPDSVVAERKHLPQVDAFVEAVARAIVLYRGSTPDAVEVRSSSPE SSAVHHGAVKISDPTKRAQLKMASKYMASPFVDPLVTRRDVRDKILDDYEAFKKDEST RVEVEAVHYHACVVDTIFFDTIRMLHTKFPTEDARAIMQIPDELRGYVEGERPTYSKK WEDVDFILAPCNVGGHWVVAKIDLVRWAIKVVDSVRTSDAKDNGVRAGQMTPLTTMMP FICHQASYFNNIRQKRRDLMPMPLDIHLPKAKVHRQNDSVSCGMFMIRYMDHILQSEN IRVK" mobile_element 33697990..33698267 /note="source:CACAO_M_E33977_F20_scaffold_4 11631 11935" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 33698268..33698348 /note="source:CACAO_Mutator_E1149_scaffold_5 13513 13593" /mobile_element_type="transposon:TIR/Mutator" mobile_element 33698349..33702530 /note="source:CACAO_M_E33977_F20_scaffold_4 11936 16541" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 33702581..33703496 /locus_tag="TCM_025609" /note="dbxref CacaoGD:Thecc1EG025609" mRNA 33702581..33703496 /locus_tag="TCM_025609" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.17 coverage" CDS 33702947..33703165 /locus_tag="TCM_025609" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10241.1" /translation="MKKFTIPFLGTKKLFKTTYSITLCGNTKCAGGCLLSPSKITAFK KSIFYESSSSTSSFPSPTTPLIFSNSFS" mobile_element complement(33703451..33703991) /note="source:scaffold_9_CACTA_0921 7598 8086" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(33705461..33705482) /note="source:CACAO_M_E57346_F74_scaffold_9 5140 5147" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 33705483..33707362 /note="source:INTACT554_F250_scaffold_7-int 1 1803" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(33707348..33707681) /note="source:CACAO_M_S_E38315_F276_scaffold_4 7948 8268" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 33707394..33707787 /note="source:CACAO_M_E34142_F67_scaffold_4 5191 5586" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(33708114..33709181) /note="source:CACAO_M_S_E38315_F276_scaffold_4 18729 19822" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 33708448..33722138 /note="source:INTACT554_F250_scaffold_7-int 2934 16559" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(33710754..33721873) /locus_tag="TCM_025612" /note="dbxref CacaoGD:Thecc1EG025612" mRNA complement(join(33710754..33711941,33712447..33713328, 33713473..33713566,33714990..33715497,33717001..33717358, 33721847..33721873)) /locus_tag="TCM_025612" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025907t1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.37 coverage" CDS complement(join(33711145..33711941,33712447..33713328, 33713473..33713566,33714990..33715497,33717001..33717320)) /locus_tag="TCM_025612" /note="paralog of Thecc1EG025907t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10242.1" /translation="MGQLSKILELMSTDKGKRVAGSSSVSKDVQQTEANTDPVYPPGF TLPLARNASIPMPSIGQYSFFGMLVPTGPPPTYAQQRPIRGASPSDPISVPDLDDLKE QEKLNSFRKKVQRMMDESRIEFYVEASRPAVNMMAKDSTHPTKIKPLTIFYEQRGEFV ENRTHAQMTIEVPKPFPYKDDKAVPWNYNFNVQVLKARKWMVESQDNATNITSVGRIT RSGCCYTPEALENLKKEKGKEKEQNLREEKVQSQESIDGSKGPVTKKKLQSSSSSSNT LYIFQFPLPSKIPNNECEDDNDSGFEVNFEKDNKKEVKIGTTLVPIEKEKLIKLLHEY VNVFAWSYQDMPRLNTDIVAHKLPLKPECKLIKQKLRRMKLEMLLKIKEDVKKQFDAG FLEVAKYLEWVANIVPVPNKDGKVRMCVDYRDLNRASPKDNFPLPHIDTLVDNTTRHS MFSFMDGFSGYNQIKMALEDREKITFITMWGTFCYKVMPFGLKNAGVTYQRAMVTLFH DMMHREVEVYVDDMIVKARKTEDHATNLERLFKRLRKFQLRLNPAKCTFGVTSRKLLG FVISERGQKLTRIRFKQSVICLLPKCRKKLEDSWEAIKGSAITDFLAEMVEENYKPME FEFPDEDLMSVCQTNEEESEEKENWKMFFDEASNALGHGIGVVLVSLEGGHYPIIAKL SFFCTNNVAEYETCVMGLQAAIERKIHILKVFGDFALVIYQLRGEWETCDSKLVRYHK FISKLIENFDKICFTHLPREENQMADALAMLAVMFKVGTDVKIQPIMINLRECPTHCS SVEEEVDGKPWYHDIVHYLKFQQYLKQSSKNDKKTIKRLAMNFFLDRDILYKRSRDQV LLRCVDSAEA" mobile_element complement(33722151..33722485) /note="source:CACAO_M_S_E38315_F276_scaffold_4 20492 20814" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 33722199..33722713 /note="source:CACAO_M_E34142_F67_scaffold_4 5191 5737" /mobile_element_type="retrotransposon:LTR/Copia" gene 33722438..33728475 /locus_tag="TCM_025615" /note="dbxref CacaoGD:Thecc1EG025615" mRNA join(33722438..33723018,33723333..33723557, 33723651..33723700,33723974..33724066,33726052..33726154, 33726935..33727069,33727151..33727238,33727316..33727450, 33727554..33727609,33727730..33728475) /locus_tag="TCM_025615" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.13 coverage" mobile_element 33722910..33723163 /note="source:CACAO_M_E34142_F67_scaffold_4 6081 6372" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(33722936..33723270) /note="source:INTACT556_F252_scaffold_2-int 1 376" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(33723487..33723557,33723651..33723700, 33723974..33724066,33726052..33726154,33726935..33727069, 33727151..33727238,33727316..33727450,33727554..33727609, 33727730..33727808) /locus_tag="TCM_025615" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10243.1" /translation="MTLLSNRYFHVLSFSSKRYNFVLEKLQLHLEICRTLFVFVVCSK SEMEILEAELRECASNLSLPLVEWEFISMDRVHVTPNHLVMMNSANAKERLCFSQTKN MFYVISGNGYSPRKRETDIKPCEVSVGIPGSECPSEHLGSCHGLEESFSCLQIVLMIY FQVRIDHMALALSKTFRSPMLHKLIYKGVTLVQLNKSYIDFCKSILIPPVGILEFSSM CKVLNDQPHLMRTKLFDLKDDDLDSMISKLVGVSLLLEQQIWIKEHSLCKI" mobile_element 33724146..33724363 /note="source:CACAO_Again_on_S_E95_scaffold_3 103 320" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(33724182..33724598) /note="source:CACAO_M_E50311_F328_scaffold_7 5868 6279" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(33724766..33725492) /note="source:CACAO_M_E50311_F328_scaffold_7 5203 5867" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(33725585..33727078) /note="source:CACAO_M_S_E16357_F328_scaffold_2 1 1486" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(33730754..33734313) /note="source:CACAO_M_E143_F311_scaffold_1 1485 5083" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(33734314..33735084) /note="source:CACAO_M_E34288_F86_scaffold_4 2136 2903" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(33735063..33735478) /note="source:CACAO_M_E143_F311_scaffold_1 4555 4977" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(33741089..33741660) /locus_tag="TCM_025619" /note="dbxref CacaoGD:Thecc1EG025619" mRNA complement(33741089..33741660) /locus_tag="TCM_025619" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.50 coverage" CDS complement(33741318..33741518) /locus_tag="TCM_025619" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10244.1" /translation="MNMSGKAMFLMLVTELMSLEKGTTSLRAANAGGVVVARSTTSLQ RREEEAYCTPFLVVNFRKVLTK" gene 33744604..33756837 /locus_tag="TCM_025620" /note="dbxref CacaoGD:Thecc1EG025620" mRNA join(33744604..33744733,33748797..33751755, 33753189..33753380,33753552..33753656,33753765..33754553, 33755466..33756837) /locus_tag="TCM_025620" /product="NB-ARC domain-containing disease resistance protein, putative" /inference="alignment:exonerate- protein:2:ricco:30128.m008690.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025600t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s04360.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.40 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc429t4" CDS join(33749218..33751755,33753189..33753380, 33753552..33753656,33753765..33754553,33755466..33756320) /locus_tag="TCM_025620" /note="paralog of Thecc1EG025600t1" /codon_start=1 /product="NB-ARC domain-containing disease resistance protein, putative" /protein_id="EOY10245.1" /db_xref="Phytozome:POPTR_0005s04360.1" /db_xref="TAIR:AT4G27190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9REY6" /translation="MEIPSNCAANLVSEIAKFMFFQIKRRISYVFHHKREVENFEEKV QRLKERRERVQHDVDAAKRNVEKIEIGVENWLIKVDKMIDEEAKETKDLEDKAKNKCF IGLCPNFKSRYQLSKKAEKDANAVDVLLRQGEFDKVSYRDPPQAMVYASPKDFEAFDS RKQVFDEIMEALKDPSINIIGVYGMAGVGKTTLVKEVAKQIKGDKLFDSVVMANVTQT LDIQKMQDQIAEPLGLKIEEKSVAARASRLHERLKGEKKILVVLDDIWARLELNKVGI PVGDEHKGCNILLTSRNLDVSLNGMDVQKKFRINVLKEEEAWELFKKMAGNGDKSPEL PSIATEVAKKCAGLPIAVSTVATALRNKDSFEWEDALRQLQRPSSSNFSEVPEEAYAA IELSYNHLKGEELKQTFLLCSLLGHNVAIQDMLKYSMGLGLFHGVNTVEEARKRLLTV VSKLKTSCLLLDSYTELHFDMHDLIRDVAISIASRDNRVFALNNEDVPKDWPNVEAMK SWDKIGLRYAINLKLPDQLKCPKLTFFYMGSRDPSMEMPTNFFKETKNLKVLDLTEMH FPSLPSSISLLSNLGTLCLDQCVLGDIAIIGELKNLEILSLLDSDIKMLPEEIGKLIK LKLLDLHGCTKLKRITPGILSSLSRLEELYMGNSRVQWEAEGHTQPSNASFAEFKALS CLTTLDVCIPNAKIIPKDLFFENLQIYRIFIGEAWDWDGQIGYSRTRTRTLKLKLDTG IEYLSYGLKMLLNKAENLHLDEMTGVKILLHESEYRESFRMLKNLHIQNGALVQYIIK DNDIVDKIEFLQLQSLILQDLPKLISFCSENNSSNSISPKELPLFNDKIMFPKLEKLK LSSINIERIWHYQPPRGSYSMQNLTSLIIEGCDKLKHILSYSMAECLQQLQSFEILEV EHCLELKGFINKSMSKDITIGSTTEALFNEQVAFPNLEKVTISHLRNVKRLWYNQLHT DSFCQMKELKTEHCDELLNIFPSSVLGVFQRLEILTVTDCEVLEEVFELQAQELEIKD TYGVTFQLKQMYLLRLPKLKHVWNRDPHGNISFQNLQGVDVWQCWSLKSVFPFSIAKG LPQLERLLVQECGVEEIVSKGEGLEQEIWFEFNQLSSLILWIVPNLKCFYPGMHTTVW PVLKNLKTYGCKEMEIFGQLESNMQKPLFHIEKVQAFTVPLEMFIHFSEVIQCLNNVP NFLLVIPQLEVVWLSSDDIAMICGGQFPENLFCHIKVLGISCESAIYPFSFLRRFYNL EELLVGHCSFKELSPSEGNVGEEKEVWMLPKIKKLVLYMFPRLTQLWKQESPLGHICA RLETLKVWRCDSLINLGVSSASFENLTSLYVRNCKGMVELITSSEVQSLMRLVTMSIR ECEMVKEVVASEADDEATYEIIFTELKCLELHCLASLRSFCSGDHTFKFPSLEQVIVS QCPRLTSFCQGAISTPKLQRVQLAETDHNGRWAGDLNATVEQLYMEQVLSNFIKHI" mobile_element 33752025..33752130 /note="source:scaffold_5_CACTA_0596 6993 7095" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(33752089..33752324) /note="source:CACAO_M_E887_F143_scaffold_1 1055 1290" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(33756971..33759191) /locus_tag="TCM_025622" /note="dbxref CacaoGD:Thecc1EG025622" mRNA complement(join(33756971..33757955,33758076..33759191)) /locus_tag="TCM_025622" /product="Cytochrome P450, family 87, subfamily A, polypeptide 6, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s05945.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025626t1" /inference="similar to AA sequence:Phytozome:POPTR_0007s05960.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.29 coverage; inference alignment:Newbler:10:TSA:cgbaB_g15450t00001" CDS complement(join(33757533..33757955,33758076..33759053)) /locus_tag="TCM_025622" /note="paralog of Thecc1EG025626t1" /codon_start=1 /product="Cytochrome P450, family 87, subfamily A, polypeptide 6, putative" /protein_id="EOY10246.1" /db_xref="Phytozome:POPTR_0007s05960.1" /db_xref="TAIR:AT1G64940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HE97" /translation="METWLIIISSLCIPAILKAVFNLLYPSRRPTHNLPPSPFTFPII ESLSWLPKTFADLEPILRDLHPKFGPMVGIGPHPAIFISDRFLIHQALVQNGAVLADR PPALIACRIINSNQRTIDTTVYGLTWRVLRRNLTAEILNHSRVKSYSHGRKLVLQILK EKLSVKAGEAVLVVNYLRYAMCCLLVLKCFGDKLDESQMKKIKVAQHCVLLNVEVFNE INFWPKVTKILFCKKWKYIFQIHKNQEDLLIPLIKARKKVKKENLSKEKEDKKIEDKE EHIVSYVDTLLDLKLHEEKRKLDEVEMVSLCSEFLNVGTDTTSTALHWITAVILEGQR GQPLAHFVLPHRVTEDVVLNNFLVPRKGTVNFYIAEMGWDPKVWEDPMAFRPDRFLNS DGGEEVFDLTGRKEIKMIPFGAGRRICPAYGLAMLHLEYFVANLVLSFEWKAVDGDDI DLSEKQEFTMVMKNPL" gene complement(33763130..33766221) /locus_tag="TCM_025624" /note="dbxref CacaoGD:Thecc1EG025624" mRNA complement(join(33763130..33763513,33763616..33763712, 33764113..33764769,33765715..33766221)) /locus_tag="TCM_025624" /product="Ribosomal protein L17 family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01037929001" /inference="similar to AA sequence:TAIR:AT3G54210.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc975t1" mRNA complement(join(33763999..33764705,33765715..33765968)) /locus_tag="TCM_025624" /product="Ribosomal protein L17 family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01037929001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001428t1" /inference="similar to AA sequence:Phytozome:GSVIVT01037929001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is medium, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1444t3; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc975t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc988t5" CDS complement(join(33764360..33764769,33765715..33765913)) /locus_tag="TCM_025624" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Ribosomal protein L17 family protein isoform 1" /protein_id="EOY10247.1" /db_xref="TAIR:AT3G54210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M385" /translation="MAMAITTDSGSSGWSMVSLKSALPPLTSTTSSIKLPCRRRSTKC PQLVRSFTALAPVNPLHSLGFSDLNNFEHNFTIIDNGCRFYAMRHGRRVPKLNRPPDQ RRALLRGLTTQLLKYGRIKTTRARASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQ IVHALFAEVPDRYGDRNGGYTRIIRTLPRRGDNAPMAYIELV" CDS complement(join(33764360..33764705,33765715..33765806)) /locus_tag="TCM_025624" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG001428t1" /codon_start=1 /product="Ribosomal protein L17 family protein isoform 2" /protein_id="EOY10248.1" /db_xref="Phytozome:GSVIVT01037929001" /db_xref="TAIR:AT3G54210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M385" /translation="MSPSFYQVPSACPFLHCSRSCQPSPFPWLLWHGRRVPKLNRPPD QRRALLRGLTTQLLKYGRIKTTRARASAMRKYVDKMITLAKDGSLHKRRQALGFIYEK QIVHALFAEVPDRYGDRNGGYTRIIRTLPRRGDNAPMAYIELV" gene complement(33766268..33770789) /locus_tag="TCM_025625" /note="dbxref CacaoGD:Thecc1EG025625" mRNA complement(join(33766268..33766324,33767566..33768017, 33769156..33770789)) /locus_tag="TCM_025625" /product="Cytochrome P450, family 87, subfamily A, polypeptide 6" /inference="alignment:exonerate-protein:2:frave:gene13253" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025626t1" /inference="similar to AA sequence:ricco:30148.m001481" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc451t3_C2" CDS complement(33769157..33770698) /locus_tag="TCM_025625" /note="dbxref ricco:30148.m001481; paralog of Thecc1EG025626t1" /codon_start=1 /product="Cytochrome P450, family 87, subfamily A, polypeptide 6" /protein_id="EOY10249.1" /db_xref="TAIR:AT1G64940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HE97" /translation="METWFLFLLTISISLLLKAFLNLFYPSKKLLHTLPPGPATFPII GGILWLRKSFFQIEPILRDLRPKLGPMVTINIGPRPTIFVFDRSLAHQALVQSGSLFS DRPKALPTNKIMNTNQHSISSAFYGPTWRLLRRNLTSEILHPSRIKSYSHARKWVLEI LFDGLQLKANTGEAVQVLAQFKYSMFCLLVLMCFGDKLSQDQIKEIEAVQQRVLLGFG RFNILNFWPRVTKVLLRKKWEQLYQLRKDQEDLLIPLIRARKKAKEENLNKKESDDYV LAYVDTLLDLELPEDKRKLEEGEIVTLASEFLNAGTDTTSTALQWIMANLVKYPYVQD KLLLEIKGVVGDGAEEIQEDDLQKMPYLKAVILEGLRRHPPGHFVLPHCVTEDTVLGG FLVPKNGTVNFMVADMAWDPKVWEDPMAFKPERFLRSDDSSGEVFDITGSREIKMMPF GVGRRICPGIGLALLHLEYFVANLIWKFEWKAIDADEISLEEKQEFTTVMKTPLRAHM SPRER" gene complement(33770836..33784052) /locus_tag="TCM_025626" /note="dbxref CacaoGD:Thecc1EG025626" mRNA complement(join(33770836..33770874,33777304..33779114, 33783706..33784052)) /locus_tag="TCM_025626" /product="Cytochrome P450, family 87, subfamily A, polypeptide 6" /inference="alignment:exonerate-protein:2:frave:gene13253" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025625t1" /inference="similar to AA sequence:ricco:30148.m001481" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.22 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc451t3_C2" mobile_element complement(33775579..33775677) /note="source:scaffold_5_CACTA_0596 7021 7113" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33775648..33775701 /note="source:CACAO_M_S_E4863_F51_scaffold_1 5683 5735" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(33777344..33778885) /locus_tag="TCM_025626" /note="dbxref ricco:30148.m001481; paralog of Thecc1EG025625t1" /codon_start=1 /product="Cytochrome P450, family 87, subfamily A, polypeptide 6" /protein_id="EOY10250.1" /db_xref="TAIR:AT1G64940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HE97" /translation="METWFLIVLTISISLLLKAFLNLFYPSKKLPHTLPPGPPTFPII GNILWLRKSFFQIEPILRHLGTKLGPMVTIHIGPRPAIFVFDRSLAHQALVQSGSLFS DRPKALPTNKIMSSNQHSISSAFYGPTWRLLRRNLTSEILHPSRIKSYSLARKWVLEI LFDGLQSKAETGEAVQVLAQFKYAMFCLLVLMCFGDKLSQDQIKEIEAVLQRVLLGFG RFNILNFWPRVTKVLLRKRWEQFYQLRKDQEDLLIPLIRARKKAKEENLTKKASDDYV LAYVDTLLDLELPEEKRKLEEGEIVSLASEFLNGGTDTTSTALQWIMANLVKYPHVQD KLLLEIKGVVGDGAEEIKEDDLQKMPYLKAVVLEGLRRHPPGHFVLPHCATEDTVLGG FLVPKNGTVNFMVADMGWDPKVWEDPMAFKPERFLRSDDGSGEVFDITGSREIKMMPF GVGRRICPGIGLAMLHLEYFVANLIWKFEWKAMDGDEISLEEKQEFTIVMKTPLRAHI SPRER" mobile_element complement(33780329..33780994) /note="source:CACAO_Again_on_S_E38_scaffold_1 82 788" /mobile_element_type="transposon:TIR/hAT" mobile_element 33783332..33783862 /note="source:CACAO_Helitron_S_E29_scaffold_3 7448 7976" /mobile_element_type="transposon:Helitron" mobile_element complement(33783864..33785011) /note="source:CACAO_Again_on_E92_scaffold_3 138 1287" /mobile_element_type="transposon:TIR/hAT" mobile_element 33785010..33785146 /note="source:CACAO_Helitron_S_E29_scaffold_3 7970 8106" /mobile_element_type="transposon:Helitron" mobile_element complement(33786615..33787105) /note="source:CACAO_Again_on_E82_scaffold_3 15 526" /mobile_element_type="transposon:TIR/hAT" gene complement(33788311..33790383) /locus_tag="TCM_025627" /note="dbxref CacaoGD:Thecc1EG025627" mRNA complement(33788311..33790383) /locus_tag="TCM_025627" /product="Cytochrome P450, family 87, subfamily A, polypeptide 6, putative" /inference="alignment:exonerate- protein:2:ricco:30148.m001478" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025630t1" /inference="similar to AA sequence:ricco:30148.m001481" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete" gene complement(33788455..33802605) /locus_tag="TCM_025628" /note="dbxref CacaoGD:Thecc1EG025628" mRNA complement(join(33788455..33788537,33795592..33795629, 33800422..33800674,33800781..33802605)) /locus_tag="TCM_025628" /product="Cytochrome P450, family 87, subfamily A, polypeptide 6, putative" /inference="alignment:exonerate- protein:2:ricco:30148.m001477" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025630t1" /inference="similar to AA sequence:ricco:30148.m001477" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2237t6" CDS complement(33788707..33790383) /locus_tag="TCM_025627" /note="dbxref ricco:30148.m001481; paralog of Thecc1EG025630t1" /codon_start=1 /product="Cytochrome P450, family 87, subfamily A, polypeptide 6, putative" /protein_id="EOY10251.1" /db_xref="TAIR:AT1G64940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HE97" /translation="MKSSFCQQTQITNNTCRSLKSSFIYPPHNSLPTQSNMETWFIIL VSISISLLFRALINLLSSHSENPSQTLPPGPANIPIISNILWVRRNVSELEPILRNLH NKLGPMVTLNILSRPAIFISDRSLAHQALIQNGALFADRPELPTIAKILSCNQHNISF APYGPTWRLLRRNLTAQILHPSRIKSYSHARKWVIQILLESLISHSKTGEPVRAVDHF QYAMFCLLVLMCFGDKLNQEQIKEIENVQRPLLIGLGGRFNLLNFCPSLTRVLLHKRW KEFFQAVEDQEKVLVPLIRARKKVKEERLSKSKEDKEEADDEEHLLAYVDTLLDLQLP KGQRNLTEQEIVTLSSEFLNAGTDTTSTALHWIMANMVKYPHVQEKLFMEIKRVVGDG EEEVKEHDLQKMPYLKAVILEGLRRHPPGHFVLPHSAREDTVLGGFSVPKNATINFMV AEMGWDPKVWEDPMSFKPERFLSSDNKSGEVFDITGTREIKMMPFGVGRRICPGLCLA MLHLEYFVANLVWNLEWKAMDGDEVSLEEKQEFTMGMMTPLQAHIYPRKR" gene 33791706..33792525 /locus_tag="TCM_025629" /note="dbxref CacaoGD:Thecc1EG025629" mRNA join(33791706..33792051,33792153..33792525) /locus_tag="TCM_025629" /product="Polymerase delta 4, putative" /inference="alignment:exonerate- protein:2:ricco:30148.m001474.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025632t1" /inference="similar to AA sequence:TAIR:AT1G09815.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14579t1" CDS join(33791862..33792051,33792153..33792346) /locus_tag="TCM_025629" /note="paralog of Thecc1EG025632t1" /codon_start=1 /product="Polymerase delta 4, putative" /protein_id="EOY10253.1" /db_xref="TAIR:AT1G09815.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1H568" /translation="MATTSKNMKGFYRQKKNNSRGRITKSKSSKSTKNPSPKQPATFS SDITQPAALTFLGGSLDLKDDSDEQEEVLRQFDMNMVYGPCLGITRMARWERAQRLGL NPPKEIENLLKGGTVKLESLFDGRV" gene complement(33795627..33797753) /locus_tag="TCM_025630" /note="dbxref CacaoGD:Thecc1EG025630" mRNA complement(33795627..33797753) /locus_tag="TCM_025630" /product="Cytochrome P450 89A2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025627t1" /inference="similar to AA sequence:ricco:30148.m001481" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.25 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8892t1" CDS complement(33795990..33797666) /locus_tag="TCM_025630" /note="dbxref ricco:30148.m001481; paralog of Thecc1EG025627t1" /codon_start=1 /product="Cytochrome P450 89A2" /protein_id="EOY10254.1" /db_xref="TAIR:AT1G64940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HE97" /translation="MKSSFCQQTQITNNTCRSLKSSFIYPPHNPLSTQSNMETWFVIL VTISISLLFRALINLLSSHSENPSQTLPPGPANIPIISNILWLRRTFSELEPILRNLH NRLGPMVTLNILSRPAIFISDRSLAHQALIQTGALFADRPEPPFIAKIVTCNQHNINS APYGPTWRLLRRNLTAQILHPSRIKSYSHARKWVLQILLESLISHSKTGEPVRAVDHF QYAMFCLLVLMCFGDKLNQEQIKEIESIQRRLLIDVGGRFNLLNFWPNLTRFLLHKRW KEFCQALEVQEKVLVRLIRARKKVKEERLSKSKDDKEEADDDEYLLAYVDTLLDLQLP EGQRNLTEQEIATLSSEFLNGGTDTTSTALQWIMANMVKYPHVQEKLFMEIKGVVRDG EEEVKEDDLQKMPYLKAVILEGLRRHPPGHFVLPHSVREDTVLGGFSVPKNATINFMI AEMGWDPKIWEDPMSFKPERFLSSGNKSGEVFDITGTREIKMMPFGVGRRICPGLGLA MLHLEYFVANLVWNLEWKAMDGDEVSLEEKQEFTVGMKTPLQAHIYPRKR" gene 33799078..33799819 /locus_tag="TCM_025631" /note="dbxref CacaoGD:Thecc1EG025631" mRNA join(33799078..33799405,33799523..33799819) /locus_tag="TCM_025631" /product="Polymerase delta 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s05980.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025632t1" /inference="similar to AA sequence:TAIR:AT1G09815.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8888t3" CDS join(33799129..33799405,33799523..33799716) /locus_tag="TCM_025631" /note="paralog of Thecc1EG025632t1" /codon_start=1 /product="Polymerase delta 4" /protein_id="EOY10255.1" /db_xref="TAIR:AT1G09815.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1H568" /translation="MQNLINARTQETIRRYKIWNFEFKRKLWGGEGESRMATTSKNMK GFYRQKKNNSRGGITKSKSSKSTKNPSPSHAATFGSDITQPAALTSPGDDFDVQEEVS RHFDMNMAYGPCLGITRMARWERAQRLGLNPPKEIENLLKGGKVKLESLFDGRV" CDS complement(33800813..33802381) /locus_tag="TCM_025628" /note="dbxref ricco:30148.m001477; paralog of Thecc1EG025630t1" /codon_start=1 /product="Cytochrome P450, family 87, subfamily A, polypeptide 6, putative" /protein_id="EOY10252.1" /db_xref="TAIR:AT1G64940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HE97" /translation="METWFIILVTISISLLFRALINLLSSHSENPSQTLPPGPANIPI ISNILWLRRTFSELEPILRNLHNKLGPMVTLNILSRPAIFISDRSLAHQALIQSGALF ADRPEPPFIAKIVTCNQHNINSAPYGPTWRLLRRNLTAQILHPSRIKSYSHARKWVIQ ILLESLISHSKTGEPVRAVDHFQYAMFCLLVLMCFGDKLSQEQIKEIENVARRLLIGM GGRFNLLNFWPSLTRFLLHKRWKEFFQTVEDQEKVLVRLIRARKKVKEERLSKSKEDK EEADDDEYLLAYVDTLLDLQLPEGQRNLTEQEIATLSSEFLSAGTDTTSTALQWIMAN MVKYPHVQEKLLMEIKGVVGDGEEEVKEDDLQKMPYLKAVILEGLRRHPPGHFVLPHS VREDTVLGGFSVPKNATINFLVAEMGRDPKVWEDPMSFKPERFLSSGNKSGEVFDITG SREIKMMPFGVGRRICPGLGLAMLHLEYFVANLVWKLEWKAMDGDEVSLEEKQEFTVG MKTPLQAHIHPRKR" gene 33803459..33805093 /locus_tag="TCM_025632" /note="dbxref CacaoGD:Thecc1EG025632" mRNA join(33803459..33803807,33803907..33805093) /locus_tag="TCM_025632" /product="Polymerase delta 4" /inference="alignment:exonerate- protein:2:ricco:30148.m001474" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025631t1" /inference="similar to AA sequence:ricco:30148.m001474" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g01415t00002" CDS join(33803465..33803807,33803907..33804100) /locus_tag="TCM_025632" /note="dbxref ricco:30148.m001474; paralog of Thecc1EG025631t1" /codon_start=1 /product="Polymerase delta 4" /protein_id="EOY10256.1" /db_xref="TAIR:AT1G09815.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SDG4" /translation="MENNQKTRPSSRNHRWNAGFDKFQTKEPIRRNKILNFEFKQKLW EGEGESRMATTSKNMKVFYRQKKNSSRGGITKSKSSKSTKNPSPKHAATFGSNITQPF ALTSPGGSLDLKDDFDEQEEVLRQFDMNMAYGPCLGITRMARWERAQRLGLNPPKEIE NLLKGGKVKLESLFDGRV" gene complement(33805185..33809437) /locus_tag="TCM_025633" /note="dbxref CacaoGD:Thecc1EG025633" mRNA complement(join(33805185..33806637,33807549..33807821, 33809373..33809437)) /locus_tag="TCM_025633" /product="Transporter, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30148.m001473" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021040t1" /inference="similar to AA sequence:Phytozome:GSVIVT01024264001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1865t2; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1787t2" mRNA complement(join(33805197..33806637,33807549..33808021)) /locus_tag="TCM_025633" /product="Transporter, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30148.m001473" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021040t1" /inference="similar to AA sequence:ricco:30148.m001473" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1787t2" CDS complement(join(33805586..33806637,33807549..33807831)) /locus_tag="TCM_025633" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30148.m001473; paralog of Thecc1EG021040t1" /codon_start=1 /product="Transporter, putative isoform 1" /protein_id="EOY10257.1" /db_xref="TAIR:AT1G64890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SDG3" /translation="MVSAEDGNGRRPAKGKANRVRSLLGVGYWVQGFRCFPWMAVNFF LKDSVKVDPSTLQILQNSANLPMVAKPLYGVVSDAVYISGQHRVPYIAIGAFLQAVSW LAITILSQSNISMLTMSLYLLLSNLGASIAEVANDAIVAETGKTQTSSKKSQSASSGE LQSFIWMASSVGGVLGNLLGGIAIDRFSPQSMFLFFGLLLAFQFFITVSVPEHSLNLP KSPSNVGIKKQLSELLVALQKPEIAYSITWFAASYAIIPALTGTMFFYQTQYLKIDAS LLGISKVFGQAVMLLWGVIYNRRFKSVRPRKLIEAIQLTMAVFMISDVLFVKGIYQQM GVPDSVYVVVFSGVLEVLFFFKILPFSVLIAQLCPPGCEGSLMAFVMSAVALAFIVSG YLGVALASYVGVTENDFSGFPLGLLIQAVCTFLPLFWSSCIPDDVKSKTRTE" CDS complement(join(33805586..33806637,33807549..33807717)) /locus_tag="TCM_025633" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG021040t1" /codon_start=1 /product="Transporter, putative isoform 2" /protein_id="EOY10258.1" /db_xref="Phytozome:GSVIVT01024264001" /db_xref="TAIR:AT1G64890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SDG3" /translation="MAVNFFLKDSVKVDPSTLQILQNSANLPMVAKPLYGVVSDAVYI SGQHRVPYIAIGAFLQAVSWLAITILSQSNISMLTMSLYLLLSNLGASIAEVANDAIV AETGKTQTSSKKSQSASSGELQSFIWMASSVGGVLGNLLGGIAIDRFSPQSMFLFFGL LLAFQFFITVSVPEHSLNLPKSPSNVGIKKQLSELLVALQKPEIAYSITWFAASYAII PALTGTMFFYQTQYLKIDASLLGISKVFGQAVMLLWGVIYNRRFKSVRPRKLIEAIQL TMAVFMISDVLFVKGIYQQMGVPDSVYVVVFSGVLEVLFFFKILPFSVLIAQLCPPGC EGSLMAFVMSAVALAFIVSGYLGVALASYVGVTENDFSGFPLGLLIQAVCTFLPLFWS SCIPDDVKSKTRTE" gene complement(33807789..33815433) /locus_tag="TCM_025634" /note="dbxref CacaoGD:Thecc1EG025634" mRNA complement(join(33807789..33807821,33809373..33809437, 33809542..33809601,33809694..33809792,33809913..33810008, 33810770..33810877,33810956..33811006,33813095..33813624, 33814328..33815433)) /locus_tag="TCM_025634" /product="Ribosomal protein S5 family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01020716001" /inference="similar to AA sequence:ricco:30148.m001472" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02525t00001" CDS complement(join(33807818..33807821,33809373..33809437, 33809542..33809601,33809694..33809792,33809913..33810008, 33810770..33810877,33810956..33811006,33813095..33813624, 33814328..33814835)) /locus_tag="TCM_025634" /note="dbxref ricco:30148.m001472" /codon_start=1 /product="Ribosomal protein S5 family protein" /protein_id="EOY10259.1" /db_xref="TAIR:AT1G64880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I6U1" /translation="MSTRSQASLCSRFLSQTLQSRSKTLPSFYRKISTFPHFPAKQTP KSSLSSKGAHFSTASSTEVRDLLAEVEREKRREKEDRTRKGLDTKDIDEEDQEDYMGV MPLIEKLEKEKLKDTGNLDMYEEPTDSDSDEDEDDERFGPEAVQKRIEEFEKKHKRHE ELLKDFTEAETLDEAFKCMRKIDKFEEKHFRLRPEYRVIGELMNRLKVAEGKEKFILQ QKLNRAMRLIEWKEAYDPNNPSNYGVIQLEQVGQSDDLVENAGQEEEEQMVRGAAADD NDDEEFDDMKEKDNILLEKLNAIDKKLEEKLADLDHTFGKKGKLLEEEIRDLAEERNA LIEKKRKPLYRKGFDVRLIDVNRTCKVTKGGQVIKYTALLACGNYHGVVGYAKAKGAA VPIALQKAYEKCFQNLHYIERHEEHTIAHAVQTAYRKTKVYLWPAPTTTGMKAGKTVE IILNLAGFKNVKSKVVGSRNPHNTVKALFKALNAIETPKDIQEKFGRTVVEKYLLH" gene 33815537..33820379 /locus_tag="TCM_025635" /note="dbxref CacaoGD:Thecc1EG025635" mRNA join(33815537..33818872,33819149..33819173) /locus_tag="TCM_025635" /product="Pentatricopeptide repeat-containing protein, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:30148.m001471" /inference="similar to AA sequence:frave:gene14428" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1645t4_C2; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1645t4_C2" CDS 33815668..33818766 /locus_tag="TCM_025635" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene14428" /codon_start=1 /product="Pentatricopeptide repeat-containing protein, putative isoform 3" /protein_id="EOY10262.1" /db_xref="TAIR:AT5G14770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SDG1" /translation="MIKYFTSHKKFLFPFRFLSRSSTFSSTKHPSPHKPSKIPPPFSP NTLSNPTIPSSKSHLYASLFCTLIHLYLTCGRFSQAKDTFCNMRKHGVIPVLPLWNHL IYSFNASGLVSEVMLLYSEMIACGVLPNVFTINVLVHSLAKVGNLSFALELLRNVGNN NNVDTVTYNTLIWGFCEQGLAYQGFGLLSEMVKKGINFDTFSCNIVVKGFCRIGFVKY GEWVMDNLVNGGIFKDVIGFNILIDGYCKSGDMNYAVQIMDRMRREGLVPDIISYNTL IDGFCKKGDFAKAKGLIDEILGSRRKKDFMILDENDHRSEGENSVILEPDLITHTTLI SAYCKREALEEALSLYEETVVNGFLPDVVTYSSIMNGLRKHGKFAEAKVLLMEMEKMG VDPNHVSYSTLVDSFFKAGNSMDAFALQSQMVVRGIAFDVVVYTTLMDGLFKVGKPKE AENTFSTLLKHKLVPNLTTYAALIDGRCKSGDINGAESALKEMKEKNVVPNVVTYSSV INSYIRKGMLDEAVNMMRKMVSENILPNVFIYAALIDGYFKAGKELVALDLYNEMKLA GLEENNFILDAFVNNFKRAGRMGEAEVLVKDMMSKGLSLDHVNYTSLMDGFFKEGKDS AALILAQEMTEKNITFDVVVYNVLINGLLRLGKYEAQSVYARMRELDLAPDLITCNTM INAYCKEGKFEYALNLWDDMKSCGLMPNSITCNILIRGLCRAGEIQKALNVLNEMLVL GFSPTTAIHKFLLDASSRNGRADAILLMHECLVSMGLKLNQAVFNTLITVLCRLGMTK KAISALNDMTGRGFSADTITYNALINGYCRGSHIKKAFATYSHMLREGVPPNVVTYNL LLRGLSTAGLMKEADELFSQMKEKGLNPNASTYDTLISGHGKIGNKRESVKVYCEMIS KGFVPRTGTYNLLISGFAKIGKMSQARELLKEMQLRGALPNSSTYDILISGWCNLSDQ PELDRASKLSCLAEVKKLLLEVKDRQFLPCESTLSNISSAFAKLGKKLNAQKGLYMRK NI" mRNA join(33815721..33818625,33819396..33820379) /locus_tag="TCM_025635" /product="Pentatricopeptide repeat-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30148.m001471" /inference="similar to AA sequence:ricco:30148.m001471" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1645t4_C2" CDS join(33815926..33818625,33819396..33819773) /locus_tag="TCM_025635" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30148.m001471" /codon_start=1 /product="Pentatricopeptide repeat-containing protein, putative isoform 1" /protein_id="EOY10260.1" /db_xref="TAIR:AT5G14770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SDG1" /translation="MRKHGVIPVLPLWNHLIYSFNASGLVSEVMLLYSEMIACGVLPN VFTINVLVHSLAKVGNLSFALELLRNVGNNNNVDTVTYNTLIWGFCEQGLAYQGFGLL SEMVKKGINFDTFSCNIVVKGFCRIGFVKYGEWVMDNLVNGGIFKDVIGFNILIDGYC KSGDMNYAVQIMDRMRREGLVPDIISYNTLIDGFCKKGDFAKAKGLIDEILGSRRKKD FMILDENDHRSEGENSVILEPDLITHTTLISAYCKREALEEALSLYEETVVNGFLPDV VTYSSIMNGLRKHGKFAEAKVLLMEMEKMGVDPNHVSYSTLVDSFFKAGNSMDAFALQ SQMVVRGIAFDVVVYTTLMDGLFKVGKPKEAENTFSTLLKHKLVPNLTTYAALIDGRC KSGDINGAESALKEMKEKNVVPNVVTYSSVINSYIRKGMLDEAVNMMRKMVSENILPN VFIYAALIDGYFKAGKELVALDLYNEMKLAGLEENNFILDAFVNNFKRAGRMGEAEVL VKDMMSKGLSLDHVNYTSLMDGFFKEGKDSAALILAQEMTEKNITFDVVVYNVLINGL LRLGKYEAQSVYARMRELDLAPDLITCNTMINAYCKEGKFEYALNLWDDMKSCGLMPN SITCNILIRGLCRAGEIQKALNVLNEMLVLGFSPTTAIHKFLLDASSRNGRADAILLM HECLVSMGLKLNQAVFNTLITVLCRLGMTKKAISALNDMTGRGFSADTITYNALINGY CRGSHIKKAFATYSHMLREGVPPNVVTYNLLLRGLSTAGLMKEADELFSQMKEKGLNP NASTYDTLISGHGKIGNKRESVKVYCEMISKGFVPRTGTYNLLISGFAKIGKMSQARE LLKEMQLRGALPNSSTYDILISGWCNLSDQPELDRASKLSCLAEKKFPLCEKSNAFTV GFSFRHMAFRGKILHIIFQSVLSAGKKFPLQEEIDVFTVGFSFRQMVFRGKISYCLSS FHDSVLIILCKTAPNLSNQYAFNSWHLCLSHFAGQDPGQCFSASNEASRLLQN" mRNA join(33815985..33819224,33819396..33819815) /locus_tag="TCM_025635" /product="Pentatricopeptide repeat-containing protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30148.m001471" /inference="similar to AA sequence:ricco:30148.m001471" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2121t2; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1645t4_C2" CDS 33816013..33818766 /locus_tag="TCM_025635" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30148.m001471" /codon_start=1 /product="Pentatricopeptide repeat-containing protein, putative isoform 2" /protein_id="EOY10261.1" /db_xref="TAIR:AT5G14770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SDG1" /translation="MLLYSEMIACGVLPNVFTINVLVHSLAKVGNLSFALELLRNVGN NNNVDTVTYNTLIWGFCEQGLAYQGFGLLSEMVKKGINFDTFSCNIVVKGFCRIGFVK YGEWVMDNLVNGGIFKDVIGFNILIDGYCKSGDMNYAVQIMDRMRREGLVPDIISYNT LIDGFCKKGDFAKAKGLIDEILGSRRKKDFMILDENDHRSEGENSVILEPDLITHTTL ISAYCKREALEEALSLYEETVVNGFLPDVVTYSSIMNGLRKHGKFAEAKVLLMEMEKM GVDPNHVSYSTLVDSFFKAGNSMDAFALQSQMVVRGIAFDVVVYTTLMDGLFKVGKPK EAENTFSTLLKHKLVPNLTTYAALIDGRCKSGDINGAESALKEMKEKNVVPNVVTYSS VINSYIRKGMLDEAVNMMRKMVSENILPNVFIYAALIDGYFKAGKELVALDLYNEMKL AGLEENNFILDAFVNNFKRAGRMGEAEVLVKDMMSKGLSLDHVNYTSLMDGFFKEGKD SAALILAQEMTEKNITFDVVVYNVLINGLLRLGKYEAQSVYARMRELDLAPDLITCNT MINAYCKEGKFEYALNLWDDMKSCGLMPNSITCNILIRGLCRAGEIQKALNVLNEMLV LGFSPTTAIHKFLLDASSRNGRADAILLMHECLVSMGLKLNQAVFNTLITVLCRLGMT KKAISALNDMTGRGFSADTITYNALINGYCRGSHIKKAFATYSHMLREGVPPNVVTYN LLLRGLSTAGLMKEADELFSQMKEKGLNPNASTYDTLISGHGKIGNKRESVKVYCEMI SKGFVPRTGTYNLLISGFAKIGKMSQARELLKEMQLRGALPNSSTYDILISGWCNLSD QPELDRASKLSCLAEVKKLLLEVKDRQFLPCESTLSNISSAFAKLGKKLNAQKGLYMR KNI" mobile_element 33821024..33821072 /note="source:CACAO_M_S_E101721_F266_scaffold_9 1459 1507" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(33821031..33821077) /note="source:CACAO_M_S_E98851_F233_scaffold_8 1325 1371" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 33823885..33826678 /locus_tag="TCM_025636" /note="dbxref CacaoGD:Thecc1EG025636" mRNA join(33823885..33824090,33824182..33824399, 33824490..33824602,33824726..33825259,33826197..33826678) /locus_tag="TCM_025636" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma18g20200.1" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(33823952..33824090,33824182..33824399, 33824490..33824602,33824726..33825259,33826197..33826467) /locus_tag="TCM_025636" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10263.1" /translation="MKADSSGESQWHVGEDNTVKETGVGTKRSCPVLDSIVASKPPST TGDVEDFEEEGEIVEESDSDHDINETVLGGPHIRLTKEEKRRIRRLWRNTLIVKLLGR EISYTYLCNRVKQLWSLGPWIIADHYLTIRRWSPDFCSEDASIDSVSAWIRLSGRWQR IEYQGLRLLCFHCGEFGHNVENCPVKKKEAEGFTEDEALNLSKLDKILEKDYESSKYG PWMHAKKSYRRSVASRMDGGQKSKFKTDNHERSYKCAPCSGSRFFVLEEDNNDQDDVE IVPNTMEQKSFAPIVPNTKNTVMGVKERTNLKKSVQDSPQISNGEPISSRSKGKAVVS GAAGSKYTWWIKRDGQEFIRERLDGAVVNEAWCDIFPYTQVVNLPRIHSNHHPLLVKR SNISPDRQASKNFRFENAWLSHPSFADFIKQN" mobile_element 33828157..33828602 /note="source:CACAO_Mariner_E180_scaffold_6 4467 4922" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 33830220..33830558 /note="source:INTACT555_F251_scaffold_2-int 10405 10721" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(33830508..33832579) /note="source:INTACT622F_F362_scaffold_4-int 10274 11961" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(33830559..33830711) /note="source:scaffold_2_CACTA_0248 15 500" /mobile_element_type="transposon:TIR/CACTA" gene complement(33837744..33842193) /locus_tag="TCM_025637" /note="dbxref CacaoGD:Thecc1EG025637" mRNA complement(join(33837744..33838387,33838527..33838588, 33838686..33838748,33838991..33839109,33839210..33839311, 33839662..33839751,33839929..33840219,33840939..33841112, 33841733..33842193)) /locus_tag="TCM_025637" /product="Root cap 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s07340.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s07340.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaL_g10497t00001" mRNA complement(join(33837876..33838387,33838527..33838588, 33838686..33838748,33838991..33839110,33839214..33839311, 33839662..33839751,33839929..33840219,33840939..33841112, 33841733..33842023)) /locus_tag="TCM_025637" /product="Root cap 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s07340.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s07340.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1705t8; inference alignment:Newbler:10:TSA:cgbaL_g10497t00001" CDS complement(join(33838305..33838387,33838527..33838588, 33838686..33838748,33838991..33839110,33839214..33839311, 33839662..33839751,33839929..33840219,33840939..33841112, 33841733..33841975)) /locus_tag="TCM_025637" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Root cap 1 isoform 2" /protein_id="EOY10265.1" /db_xref="Phytozome:POPTR_0013s07340.1" /db_xref="TAIR:AT5G17520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LF50" /translation="MADSLFFPLAAKAPGDHSSFVFRNCPFPSRLLPSKPFPLHLNGS KNKLNVLALSQYSLVSLRYRVGPTPALDSDFPHPLHKGSVNFKSAKIYEQWDSLTAKF SGAANIPFLLLQLPQIILNARNLLAGNKTALFAVPWLGMFTGLLGNLSLLSYFAKKRE KEAIAVQTLGVVSIYVVITQLAMAEAMPLPYFVGTSVVVGAGLILNFLNYYGKLNTTI WQFWEDFITVGGLSVLPQIMWSTFVPYIPNSILPGAIAFVLAVTAVIMARMGKLSEKG VKFVGAISGWTATLLFMWMPVSQWTNFLNPDNIKGLSAFSMLLAMIGNGLMIPRALFI RDFMWFTGATWASLFYGYGNIVCLYFFNTISREFFLAATVGLFSWIGMALWRDTVVYG YNSPLRSLKELVFGS" CDS complement(join(33838305..33838387,33838527..33838588, 33838686..33838748,33838991..33839109,33839210..33839311, 33839662..33839751,33839929..33840219,33840939..33841112, 33841733..33841975)) /locus_tag="TCM_025637" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Root cap 1 isoform 1" /protein_id="EOY10264.1" /db_xref="Phytozome:POPTR_0013s07340.1" /db_xref="TAIR:AT5G17520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LF50" /translation="MADSLFFPLAAKAPGDHSSFVFRNCPFPSRLLPSKPFPLHLNGS KNKLNVLALSQYSLVSLRYRVGPTPALDSDFPHPLHKGSVNFKSAKIYEQWDSLTAKF SGAANIPFLLLQLPQIILNARNLLAGNKTALFAVPWLGMFTGLLGNLSLLSYFAKKRE KEAIAVQTLGVVSIYVVITQLAMAEAMPLPYFVGTSVVVGAGLILNFLNYYGKLNTTI WQFWEDFITVGGLSVLPQIMWSTFVPYIPNSILPGAIAFVLAVTAVIMARMGKLSEKG VKFVGAISGWTATLLFMWMPVSQMWTNFLNPDNIKGLSAFSMLLAMIGNGLMIPRALF IRDFMWFTGATWASLFYGYGNIVCLYFFNTISREFFLAATVGLFSWIGMALWRDTVVY GYNSPLRSLKELVFGS" gene 33843148..33847031 /locus_tag="TCM_025638" /note="dbxref CacaoGD:Thecc1EG025638" mRNA join(33843148..33843297,33843437..33847031) /locus_tag="TCM_025638" /product="GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain" /inference="alignment:exonerate- protein:2:ricco:30148.m001469" /inference="similar to AA sequence:Phytozome:POPTR_0013s07330.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8612t1" CDS 33843483..33846062 /locus_tag="TCM_025638" /codon_start=1 /product="GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain" /protein_id="EOY10266.1" /db_xref="Phytozome:POPTR_0013s07330.1" /db_xref="TAIR:AT1G17070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SLC6" /translation="MDEYQEMERFGMENDFEDGQWINGEFYYKKRKQKRTQTKDDVLY GVFASDTDSEDDDSSSSRKRRKDFGKKPDLTKPVNFVSTGTVMPNQEIDENSKEENDN DVFDDNDNDSRPGLGSGVGLGFGGNDSLRKSDGNDGGVEDDDHSFLPTAFGRKIKEGA QRREKERERLRMEKKSLGGRREVGGGHGDVGGFEKHTKGIGMKLLEKMGYKGGGLGKN EQGIVAPIEAKLRPKNMGMGFNDFKEAKLPGLQQLDEKKSVNQQPVGRVKERLWSKNA KGRKKQQYVTVEELLVKKQEEGVEVVQKVIDMRGPQVRVLTNLENLDAEEKARENDVP MPELQHNLKLIVDLAELDIQKIDRDLRNEKETALSLQKEKEKLEIEAARQKQQLANME QIASVLALIEEENSSGKLTLESLEKSFRDLQRNYADDYKLCNLSCIACSFALPLFIRM FQGWDPLENPSYGMEVISAWKDVLQREDSYDIWEDVTTPYCQLVSEVVLPAVRISGIN TWEPRNPEPMLGFLELWEKLLPSSIRDMILDTVVMPKLSRAVDSWNPRKETVPIHVWV HPWLLMLGQKLEGLYQTIRMKLSNVLDAWHPSDPSAYAILSPWKTVFDSVSWEQLMRQ YIVPKLQIALQEFQINPADQKLDQFYWVMSWASAIPIHLMVDLMEKFFFVKWLQVLYH WLCSKPDFEEIKNWYMGWKGLLPQELLANESIRNQLNCGLEMMVQAADHVPVVQPGLR ENVTYLKVREQRQFEAQQRAAAHVQQPVAAGLGATVQMDGVPEMSLKEVVEAYAQQHE LLFKPKPGRMHNGQQIYGFGNISVIVDSLNQKVYAQKEDGWSLVSLDDLLKMHYNSLA RRH" mobile_element complement(33849665..33850714) /note="source:CACAO_M_E12289_F140_scaffold_3 1356 2371" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 33851170..33851853 /note="source:INTACT117_F146_scaffold_2-int 1465 2213" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(33852396..33852443) /note="source:CACAO_Mutator_E1149_scaffold_5 4711 4758" /mobile_element_type="transposon:TIR/Mutator" gene 33852902..33853522 /locus_tag="TCM_025639" /note="dbxref CacaoGD:Thecc1EG025639" mRNA 33852902..33853522 /locus_tag="TCM_025639" /product="Zinc finger protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s14300.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000958t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s14300.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00967t00002_C1" CDS 33852963..33853370 /locus_tag="TCM_025639" /note="paralog of Thecc1EG000958t1" /codon_start=1 /product="Zinc finger protein, putative" /protein_id="EOY10267.1" /db_xref="Phytozome:POPTR_0015s14300.1" /db_xref="TAIR:AT4G14225.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9R9M7" /translation="MANANLPPLCAKGCGFYSSSQTKNLCSKCYNDFLKELIAKSTAE VKVDPSSAAPNPSVSVDSSSVPTPSKLKNRCESCNKKVGLMGFSCRCGKVLCGVHRYP KEHSCNFDFKTADRLILAEENSLVMADKLESRI" gene complement(33853772..33859277) /locus_tag="TCM_025640" /note="dbxref CacaoGD:Thecc1EG025640" mRNA complement(join(33853772..33854239,33854630..33854742, 33855402..33855464,33855566..33855643,33855729..33855782, 33856006..33856134,33856908..33857000,33857109..33857307, 33857401..33858241,33859088..33859264)) /locus_tag="TCM_025640" /product="Sigma factor A isoform 1" /inference="alignment:exonerate- protein:2:ricco:30148.m001468" /inference="similar to AA sequence:ricco:30148.m001468" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g09643t00001; inference alignment:Newbler:10:TSA:cgbaL_g09643t00001" CDS complement(join(33854131..33854239,33854630..33854742, 33855402..33855464,33855566..33855643,33855729..33855782, 33856006..33856134,33856908..33857000,33857109..33857307, 33857401..33858089)) /locus_tag="TCM_025640" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30148.m001468" /codon_start=1 /product="Sigma factor A isoform 1" /protein_id="EOY10268.1" /db_xref="TAIR:AT1G64860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22057" /translation="MMATAAVIGLTTGKRLLSSSFSYSDIIEKLSYANDYGSSHHQTS STKSLIVAKKSSNCSQSLPSSNRRAQSIKALKEHVDSASIVSTAEPLFQGSNDLEVES YDLDYSVEALLLLQKSMLEKQWTLSFERTVFTESPSRKIHKKIPVTCSGVSARQRRFN TKRKILIQNKSIIQPNAKQLRSLISPELLQSRLKGYVKGVVSDELLSHAEVVRLSKKI KAGLSLEEHRLRLKERLGCEPSDEQLATSLKISRAELRSKLIECSLAREKLAMSNVRL VMSIAQRYDNMGAEMSDLIQGGLIGLLRGIEKFDSSKGYKISTYVYWWIRQGVSRALV ENSRTLRLPTHLHERLGLIRNAKIRLEEKGITPTIDRIAESLNMSQKKVRNATEAVSK VFSLDRDAFPSLNGLPGETHHSYIADNHVENIPWHGVDEWALKDEVNRLITITLGERE REIIRLYYGLDKESLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKMEAMLVKH " mRNA complement(join(33854719..33854804,33855402..33855464, 33855566..33855643,33855729..33855782,33856006..33856134, 33856908..33857000,33857109..33857307,33857401..33858241, 33859088..33859277)) /locus_tag="TCM_025640" /product="Sigma factor A isoform 2" /inference="alignment:exonerate- protein:2:ricco:30148.m001468" /inference="similar to AA sequence:ricco:30148.m001468" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1658t1; inference alignment:Newbler:10:TSA:cgbaL_g09643t00001" CDS complement(join(33854757..33854804,33855402..33855464, 33855566..33855643,33855729..33855782,33856006..33856134, 33856908..33857000,33857109..33857307,33857401..33858089)) /locus_tag="TCM_025640" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30148.m001468" /codon_start=1 /product="Sigma factor A isoform 2" /protein_id="EOY10269.1" /db_xref="TAIR:AT1G64860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22057" /translation="MMATAAVIGLTTGKRLLSSSFSYSDIIEKLSYANDYGSSHHQTS STKSLIVAKKSSNCSQSLPSSNRRAQSIKALKEHVDSASIVSTAEPLFQGSNDLEVES YDLDYSVEALLLLQKSMLEKQWTLSFERTVFTESPSRKIHKKIPVTCSGVSARQRRFN TKRKILIQNKSIIQPNAKQLRSLISPELLQSRLKGYVKGVVSDELLSHAEVVRLSKKI KAGLSLEEHRLRLKERLGCEPSDEQLATSLKISRAELRSKLIECSLAREKLAMSNVRL VMSIAQRYDNMGAEMSDLIQGGLIGLLRGIEKFDSSKGYKISTYVYWWIRQGVSRALV ENSRTLRLPTHLHERLGLIRNAKIRLEEKGITPTIDRIAESLNMSQKKVRNATEAVSK VFSLDRDAFPSLNGLPGETHHSYIADNHVENIPWHGVDEWALKMMLYSHSTQSESDPY " gene complement(33859975..33874327) /locus_tag="TCM_025642" /note="dbxref CacaoGD:Thecc1EG025642" mRNA complement(join(33859975..33861037,33861199..33861494, 33861900..33862052,33863371..33864197,33864298..33864372, 33865274..33865348,33865436..33865518,33865637..33865751, 33865914..33866064,33867461..33867583,33868705..33868745, 33868837..33868915,33869017..33869099,33869219..33869288, 33869416..33869525,33869621..33869774,33871079..33871278, 33873216..33873723)) /locus_tag="TCM_025642" /product="ATP binding protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024260001" /inference="similar to AA sequence:Phytozome:GSVIVT01024260001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc761t13" mRNA complement(join(33859989..33860637,33860875..33861037, 33861199..33861494,33861900..33862052,33863371..33864197, 33864298..33864372,33865274..33865348,33865436..33865518, 33865637..33865751,33865914..33866064,33867461..33867583, 33868705..33868745,33868837..33868915,33869017..33869099, 33869219..33869288,33869416..33869525,33869621..33869774, 33871079..33871278,33873216..33874327)) /locus_tag="TCM_025642" /product="ATP binding protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024260001" /inference="similar to AA sequence:Phytozome:GSVIVT01024260001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc749t9_C1; alternateUTRof:Thecc1EG025642t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc761t13" mRNA complement(join(33860761..33861037,33861199..33861494, 33861900..33862052,33863371..33864197,33864298..33864372, 33865274..33865351,33865436..33865518,33865637..33865751, 33865914..33866064,33867461..33867583,33868705..33868748, 33868837..33868915,33869017..33869099,33869219..33869288, 33869416..33869525,33869621..33869774,33871079..33871278, 33873216..33873643)) /locus_tag="TCM_025642" /product="YAK1-related gene 1 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024260001" /inference="similar to AA sequence:Phytozome:GSVIVT01024260001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8750t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc761t13" CDS complement(join(33860961..33861037,33861199..33861494, 33861900..33862052,33863371..33864197,33864298..33864372, 33865274..33865348,33865436..33865518,33865637..33865751, 33865914..33866064,33867461..33867583,33868705..33868745, 33868837..33868915,33869017..33869099,33869219..33869288, 33869416..33869525,33869621..33869774,33871079..33871278, 33873216..33873380)) /locus_tag="TCM_025642" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="ATP binding protein, putative isoform 1" /protein_id="EOY10270.1" /db_xref="Phytozome:GSVIVT01024260001" /db_xref="TAIR:AT5G35980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SDF7" /translation="MDEVGPSNQGEPEGASELGSEEGSKVRWRPRQLVFGAYSPRNEA DRKLRVVVRRPLVARLTKDIIETYQICNPQFKYSEELNPKRFLTSPSVGVLNDGYDNV NSDLILTVNFVLTNLETQRRYIVKDVLGHGTFGQVAKCWVPETSSFVAVKIIKNQPAY YQQALVEVSILTTLNKKYDPEDKHHIVRIYDYFVYQRHLCICFELLDTNLYELIKINH FRGLSLSIVQLFSKQILRGLALLKDAGIIHCDLKPENILLCTSVKPAEIKIIDFGSAC MEDRTVYSYIQSRYYRSPEVLLGYQYTTAIDMWSFGCIVAELFLGLPLFPGASEFDLL RRMIEILGGQPPDYVLKEAKNTSKFFKCIGSIHNTENGEVFIGGRSAYQALTEEEYEA RELKKPLIGKEYFNHKNLEAIVTNYPYRKNLPKEDIIKESQIRLALIDFLRGLVEFDP AKRWSPFQASKHPFVTGEPFTCPYRPPPETPRLPVAQNIKVDHHPGGGHWFAAGLSPN IPNRNRVAFHNSPHFPMVPYGHANSYGSIGSYGSYNDNTGLGSSYGSYGDSSNMFAYY SPVGPSAMNMHSQGGASMLGSSPDARRRVMQYSHGNGLGVSPSAGNFAPLPLGTSPSQ FTPPSSYGQVSGGSPGHYGPTSPARNSCQGSPLSKMAAAGQFNRRKSWGYSGSSQSQE SSSLSNWQGQVSDGTTSSQAEGNSQVVSGLPSHIQSNSNTANWKQQRGGIGMATGYSV IQNIPNSIGLGSNVQLQHGTGAAQDKTDASMSLPDPGDWDPNYSDELLLQEDGSDESC MTAEFNRGMHIGSADSSVGVGRFNRALTTSSNLSIQRQNGPVGFSHIEVGSPPANDPH AGYPRFMSKHSHFMPHMTQNSPSRLGQQTVQRFNHGRSTAARGSEWNHMKVQLPPPSF SSGGPRSPGNSSFSNGMPWGRRASHPVSNIPPASRGRKDYGRIA" CDS complement(join(33860961..33861037,33861199..33861494, 33861900..33862052,33863371..33864197,33864298..33864372, 33865274..33865348,33865436..33865518,33865637..33865751, 33865914..33866064,33867461..33867583,33868705..33868745, 33868837..33868915,33869017..33869099,33869219..33869288, 33869416..33869525,33869621..33869774,33871079..33871278, 33873216..33873380)) /locus_tag="TCM_025642" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="ATP binding protein, putative isoform 1" /protein_id="EOY10271.1" /db_xref="Phytozome:GSVIVT01024260001" /db_xref="TAIR:AT5G35980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SDF7" /translation="MDEVGPSNQGEPEGASELGSEEGSKVRWRPRQLVFGAYSPRNEA DRKLRVVVRRPLVARLTKDIIETYQICNPQFKYSEELNPKRFLTSPSVGVLNDGYDNV NSDLILTVNFVLTNLETQRRYIVKDVLGHGTFGQVAKCWVPETSSFVAVKIIKNQPAY YQQALVEVSILTTLNKKYDPEDKHHIVRIYDYFVYQRHLCICFELLDTNLYELIKINH FRGLSLSIVQLFSKQILRGLALLKDAGIIHCDLKPENILLCTSVKPAEIKIIDFGSAC MEDRTVYSYIQSRYYRSPEVLLGYQYTTAIDMWSFGCIVAELFLGLPLFPGASEFDLL RRMIEILGGQPPDYVLKEAKNTSKFFKCIGSIHNTENGEVFIGGRSAYQALTEEEYEA RELKKPLIGKEYFNHKNLEAIVTNYPYRKNLPKEDIIKESQIRLALIDFLRGLVEFDP AKRWSPFQASKHPFVTGEPFTCPYRPPPETPRLPVAQNIKVDHHPGGGHWFAAGLSPN IPNRNRVAFHNSPHFPMVPYGHANSYGSIGSYGSYNDNTGLGSSYGSYGDSSNMFAYY SPVGPSAMNMHSQGGASMLGSSPDARRRVMQYSHGNGLGVSPSAGNFAPLPLGTSPSQ FTPPSSYGQVSGGSPGHYGPTSPARNSCQGSPLSKMAAAGQFNRRKSWGYSGSSQSQE SSSLSNWQGQVSDGTTSSQAEGNSQVVSGLPSHIQSNSNTANWKQQRGGIGMATGYSV IQNIPNSIGLGSNVQLQHGTGAAQDKTDASMSLPDPGDWDPNYSDELLLQEDGSDESC MTAEFNRGMHIGSADSSVGVGRFNRALTTSSNLSIQRQNGPVGFSHIEVGSPPANDPH AGYPRFMSKHSHFMPHMTQNSPSRLGQQTVQRFNHGRSTAARGSEWNHMKVQLPPPSF SSGGPRSPGNSSFSNGMPWGRRASHPVSNIPPASRGRKDYGRIA" CDS complement(join(33860961..33861037,33861199..33861494, 33861900..33862052,33863371..33864197,33864298..33864372, 33865274..33865351,33865436..33865518,33865637..33865751, 33865914..33866064,33867461..33867583,33868705..33868748, 33868837..33868915,33869017..33869099,33869219..33869288, 33869416..33869525,33869621..33869774,33871079..33871278, 33873216..33873380)) /locus_tag="TCM_025642" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="YAK1-related gene 1 isoform 4" /protein_id="EOY10273.1" /db_xref="Phytozome:GSVIVT01024260001" /db_xref="TAIR:AT5G35980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SDF7" /translation="MDEVGPSNQGEPEGASELGSEEGSKVRWRPRQLVFGAYSPRNEA DRKLRVVVRRPLVARLTKDIIETYQICNPQFKYSEELNPKRFLTSPSVGVLNDGYDNV NSDLILTVNFVLTNLETQRRYIVKDVLGHGTFGQVAKCWVPETSSFVAVKIIKNQPAY YQQALVEVSILTTLNKKYDPEDKHHIVRIYDYFVYQRHLCICFELLDTNLYELIKINH FRGLSLSIVQLFSKQILRGLALLKDAGIIHCDLKPENILLCTSVKPAEIKIIDFGSAC MEDRTVYSYIQQSRYYRSPEVLLGYQYTTAIDMWSFGCIVAELFLGLPLFPGASEFDL LRRMIEILGGQPPDYVLKEAKNTSKFFKCIGSIHNTENGEVFIGGRSAYQALTEEEYE ARELKKPLIGKEYFNHKNLEAIVTNYPYRKNLPKEDIIKESQIRLALIDFLRGLVEFD PAKRWSPFQQASKHPFVTGEPFTCPYRPPPETPRLPVAQNIKVDHHPGGGHWFAAGLS PNIPNRNRVAFHNSPHFPMVPYGHANSYGSIGSYGSYNDNTGLGSSYGSYGDSSNMFA YYSPVGPSAMNMHSQGGASMLGSSPDARRRVMQYSHGNGLGVSPSAGNFAPLPLGTSP SQFTPPSSYGQVSGGSPGHYGPTSPARNSCQGSPLSKMAAAGQFNRRKSWGYSGSSQS QESSSLSNWQGQVSDGTTSSQAEGNSQVVSGLPSHIQSNSNTANWKQQRGGIGMATGY SVIQNIPNSIGLGSNVQLQHGTGAAQDKTDASMSLPDPGDWDPNYSDELLLQEDGSDE SCMTAEFNRGMHIGSADSSVGVGRFNRALTTSSNLSIQRQNGPVGFSHIEVGSPPAND PHAGYPRFMSKHSHFMPHMTQNSPSRLGQQTVQRFNHGRSTAARGSEWNHMKVQLPPP SFSSGGPRSPGNSSFSNGMPWGRRASHPVSNIPPASRGRKDYGRIA" mRNA complement(join(33861008..33861037,33861145..33861494, 33861900..33862052,33863371..33864197,33864298..33864372, 33865274..33865348,33865436..33865518,33865637..33865751, 33865914..33866064,33867461..33867583,33868705..33868745, 33868837..33868915,33869017..33869099,33869219..33869288, 33869416..33869525,33869621..33869774,33871079..33871278, 33873216..33874327)) /locus_tag="TCM_025642" /product="YAK1-related gene 1 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024260001" /inference="similar to AA sequence:Phytozome:GSVIVT01024260001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc749t3; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc761t13" CDS complement(join(33861164..33861494,33861900..33862052, 33863371..33864197,33864298..33864372,33865274..33865348, 33865436..33865518,33865637..33865751,33865914..33866064, 33867461..33867583,33868705..33868745,33868837..33868915, 33869017..33869099,33869219..33869288,33869416..33869525, 33869621..33869774,33871079..33871278,33873216..33873380)) /locus_tag="TCM_025642" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="YAK1-related gene 1 isoform 3" /protein_id="EOY10272.1" /db_xref="Phytozome:GSVIVT01024260001" /db_xref="TAIR:AT5G35980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SDF7" /translation="MDEVGPSNQGEPEGASELGSEEGSKVRWRPRQLVFGAYSPRNEA DRKLRVVVRRPLVARLTKDIIETYQICNPQFKYSEELNPKRFLTSPSVGVLNDGYDNV NSDLILTVNFVLTNLETQRRYIVKDVLGHGTFGQVAKCWVPETSSFVAVKIIKNQPAY YQQALVEVSILTTLNKKYDPEDKHHIVRIYDYFVYQRHLCICFELLDTNLYELIKINH FRGLSLSIVQLFSKQILRGLALLKDAGIIHCDLKPENILLCTSVKPAEIKIIDFGSAC MEDRTVYSYIQSRYYRSPEVLLGYQYTTAIDMWSFGCIVAELFLGLPLFPGASEFDLL RRMIEILGGQPPDYVLKEAKNTSKFFKCIGSIHNTENGEVFIGGRSAYQALTEEEYEA RELKKPLIGKEYFNHKNLEAIVTNYPYRKNLPKEDIIKESQIRLALIDFLRGLVEFDP AKRWSPFQASKHPFVTGEPFTCPYRPPPETPRLPVAQNIKVDHHPGGGHWFAAGLSPN IPNRNRVAFHNSPHFPMVPYGHANSYGSIGSYGSYNDNTGLGSSYGSYGDSSNMFAYY SPVGPSAMNMHSQGGASMLGSSPDARRRVMQYSHGNGLGVSPSAGNFAPLPLGTSPSQ FTPPSSYGQVSGGSPGHYGPTSPARNSCQGSPLSKMAAAGQFNRRKSWGYSGSSQSQE SSSLSNWQGQVSDGTTSSQAEGNSQVVSGLPSHIQSNSNTANWKQQRGGIGMATGYSV IQNIPNSIGLGSNVQLQHGTGAAQDKTDASMSLPDPGDWDPNYSDELLLQEDGSDESC MTAEFNRGMHIGSADSSVGVGRFNRALTTSSNLSIQRQNGPVGFSHIEVGSPPANDPH AGYPRFMSKHSHFMPHMTQNSPSRLGQQTVQRFNHGRSTAARGSEWNHMKVQLPPPSF SSGGPRSPGNSSFSNGMPWGTSLLHSIKLL" gene complement(33875281..33876074) /locus_tag="TCM_025644" /note="dbxref CacaoGD:Thecc1EG025644" mRNA complement(join(33875281..33875792,33876046..33876074)) /locus_tag="TCM_025644" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc819t6" CDS complement(33875630..33875791) /locus_tag="TCM_025644" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10274.1" /translation="MEPCGQHRGNYSFAFLNRGYTNLPLNPMFKCRIEIVNSLPFTEG IIGVALLVQ" gene complement(33875704..33883613) /locus_tag="TCM_025645" /note="dbxref CacaoGD:Thecc1EG025645" mRNA complement(join(33875704..33876143,33877006..33877145, 33877543..33877638,33877746..33877903,33877996..33878110, 33878435..33878488,33879422..33879529,33880893..33880982, 33881730..33881909,33881977..33882067,33883006..33883224, 33883315..33883533)) /locus_tag="TCM_025645" /product="Kinetochore protein nuf2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s03160.1" /inference="similar to AA sequence:ricco:30071.m000438" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05401t00001; alternateUTRof:Thecc1EG025645t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc675t41" mRNA complement(join(33876633..33877145,33877543..33877638, 33877746..33877903,33877996..33878110,33878435..33878488, 33879422..33879529,33880893..33880982,33881730..33881909, 33881977..33882067,33883006..33883224,33883315..33883613)) /locus_tag="TCM_025645" /product="Kinetochore protein nuf2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s03160.1" /inference="similar to AA sequence:ricco:30071.m000438" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc675t41" CDS complement(join(33877083..33877145,33877543..33877638, 33877746..33877903,33877996..33878110,33878435..33878488, 33879422..33879529,33880893..33880982,33881730..33881909, 33881977..33882067,33883006..33883224,33883315..33883478)) /locus_tag="TCM_025645" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30071.m000438" /codon_start=1 /product="Kinetochore protein nuf2 isoform 1" /protein_id="EOY10275.1" /db_xref="TAIR:AT1G61000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AJI4" /translation="MSKFEYPILSRADIISILAESQIAAVTDNDFKNVKPDFVSDLYT RLLIYLDALHEEDQGQVEFSALEQFENPDLLIGSIQVMNLYCRLREVVASLNCPMQFN LRDLVKPDSARAEFFISSILNFCLYKDTKMNLLRPIAEELTLLDEQRKEWEAKISQLN AEIAGYSEARERELPLVQEVDSKVKELREMIAGLNSNQMSLRTSFRNLKDKTGQMDEK ISKAEFDLVQSVQENANLRSKIVQSPDKLQRALEERKLARDEAKTAERLAMQSFQEKT TIVEVYSKALKKMSKHFALMQAIHEQVNSAKSVEKEWKGLKAKLSDDAVLDKSLEAKL IERQGKVEQLDELQRQLQKERDLKFEESTKHLNDVKLEVESRRRDLEARQRKVEDVVA EVDSITLKTSMAKESGAAKVHDLVSKCEEIVKQFQHYSSSIGVLLPVLGTKTT" CDS complement(join(33877083..33877145,33877543..33877638, 33877746..33877903,33877996..33878110,33878435..33878488, 33879422..33879529,33880893..33880982,33881730..33881909, 33881977..33882067,33883006..33883224,33883315..33883478)) /locus_tag="TCM_025645" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30071.m000438" /codon_start=1 /product="Kinetochore protein nuf2 isoform 1" /protein_id="EOY10276.1" /db_xref="TAIR:AT1G61000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AJI4" /translation="MSKFEYPILSRADIISILAESQIAAVTDNDFKNVKPDFVSDLYT RLLIYLDALHEEDQGQVEFSALEQFENPDLLIGSIQVMNLYCRLREVVASLNCPMQFN LRDLVKPDSARAEFFISSILNFCLYKDTKMNLLRPIAEELTLLDEQRKEWEAKISQLN AEIAGYSEARERELPLVQEVDSKVKELREMIAGLNSNQMSLRTSFRNLKDKTGQMDEK ISKAEFDLVQSVQENANLRSKIVQSPDKLQRALEERKLARDEAKTAERLAMQSFQEKT TIVEVYSKALKKMSKHFALMQAIHEQVNSAKSVEKEWKGLKAKLSDDAVLDKSLEAKL IERQGKVEQLDELQRQLQKERDLKFEESTKHLNDVKLEVESRRRDLEARQRKVEDVVA EVDSITLKTSMAKESGAAKVHDLVSKCEEIVKQFQHYSSSIGVLLPVLGTKTT" mRNA complement(join(33877547..33877638,33877746..33877903, 33877992..33878110,33878435..33878488,33879422..33879529, 33880893..33880982,33881730..33881909,33881977..33882067, 33883006..33883224,33883315..33883595)) /locus_tag="TCM_025645" /product="Kinetochore protein nuf2 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0007s03160.1" /inference="similar to AA sequence:Phytozome:POPTR_0007s03160.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc819t2; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc675t41" CDS complement(join(33877900..33877903,33877992..33878110, 33878435..33878488,33879422..33879529,33880893..33880982, 33881730..33881909,33881977..33882067,33883006..33883224, 33883315..33883478)) /locus_tag="TCM_025645" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Kinetochore protein nuf2 isoform 3" /protein_id="EOY10277.1" /db_xref="Phytozome:POPTR_0007s03160.1" /db_xref="TAIR:AT1G61000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AJI4" /translation="MSKFEYPILSRADIISILAESQIAAVTDNDFKNVKPDFVSDLYT RLLIYLDALHEEDQGQVEFSALEQFENPDLLIGSIQVMNLYCRLREVVASLNCPMQFN LRDLVKPDSARAEFFISSILNFCLYKDTKMNLLRPIAEELTLLDEQRKEWEAKISQLN AEIAGYSEARERELPLVQEVDSKVKELREMIAGLNSNQMSLRTSFRNLKDKTGQMDEK ISKAEFDLVQSVQENANLRSKIVQSPDKLQRALEERKLARDEAKTAERLAMQSFQEKT TIVEVYSKALKKMSKHFALMQAIHEQVNSAKSVEKEWKGLKAKLSDDAVLDKSLEAKL IERQGKGS" mobile_element complement(33878851..33878891) /note="source:CACAO_M_E70329_F198_scaffold_10 2441 2482" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 33885335..33886467 /note="source:scaffold_4_CACTA_0502 2146 3276" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33888103..33890710 /note="source:CACAO_M_E44164_F53_scaffold_5 1 2595" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(33890711..33891269) /note="source:INTACT44_F119_scaffold_6-int 5647 6306" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(33891273..33891825) /note="source:INTACT44_F119_scaffold_6-int 2812 3370" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(33891882..33892021) /note="source:INTACT44_F119_scaffold_6-int 1392 1528" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(33892178..33892389) /note="source:INTACT44_F119_scaffold_6-int 1159 1383" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 33892501..33892651 /note="source:CACAO_on_E33_A_scaffold_3 7608 7819" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(33892902..33892970) /note="source:CACAO_on_E33_A_scaffold_3 11625 11692" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(33893130..33893311) /note="source:CACAO_on_E33_A_scaffold_3 11320 11519" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(33894415..33894480) /note="source:INTACT44_F119_scaffold_6-int 1214 1278" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 33894819..33901581 /locus_tag="TCM_025647" /note="dbxref CacaoGD:Thecc1EG025647" mRNA join(33894819..33895085,33896383..33896461, 33897972..33898409,33899334..33900213,33900905..33901581) /locus_tag="TCM_025647" /product="Benzoyl coenzyme A: Benzyl alcohol benzoyl transferase" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024259001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025648t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s06040.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.42 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03457t00001" CDS join(33894868..33895085,33896383..33896461, 33897972..33898409,33899334..33900213,33900905..33900912) /locus_tag="TCM_025647" /note="paralog of Thecc1EG025648t1" /codon_start=1 /product="Benzoyl coenzyme A: Benzyl alcohol benzoyl transferase" /protein_id="EOY10278.1" /db_xref="Phytozome:POPTR_0019s06040.1" /db_xref="TAIR:AT5G17540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GT21" /translation="MLQKNYIKGVPRVKEPKGVPNAQVPRGVPSVEVLRGVISTETPS GVLSVEGSRGIPSTEAPRGVPNAETPRNNWTCNISRAPRIMCSHRNSDDGVYSDGRST SLAFKVRRCEPELVVPAKPTPREYKPLSDIDDREGHRFEYPVIQFYRYSPSMQGRDPA RVIRDALAKTLVFYYPYAGRLREGPNRKLTVDCTGEGVLFSEGDADVTLEQFGEELQP PFPCMEELLYDVPGYGGVLNCPLLLIQVTRLKCGGFIFALRHNHTMSDAIGLVQFMSA MGEMARGALAPTISPVWERHLLNARNPPRITCTHHEFEQVIHTNANIITQLDNMVHRS FFFGPKQVSALRRFAPPHRRCSTFDIIAACLWRCHTIALQLDPNEDVGIICVVNARSK FNPPLPLGYYGNAIAYPATLTTVGKLCQNPLWYAIELVKQTKAKVTEEYMKSTADFLV TRGRPALSLTRSFLVSDVTRAKFEDVDFGWGKAAYAGQAKIMDGSHLLPFTNKKGEDG IIMPICLPATLMERFVKELDSMLKDESTVGGM" gene 33900406..33907911 /locus_tag="TCM_025648" /note="dbxref CacaoGD:Thecc1EG025648" mRNA join(33900406..33900465,33905650..33906216, 33906579..33907911) /locus_tag="TCM_025648" /product="Benzoyl coenzyme A: Benzyl alcohol benzoyl transferase, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma02g00340.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025661t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s06040.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02921t00002" mobile_element complement(33901418..33901764) /note="source:CACAO_on_E565_scaffold_5 13468 13843" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(33901779..33901973) /note="source:CACAO_on_E565_scaffold_5 6 205" /mobile_element_type="transposon:TIR/PIF-Harbinger" CDS join(33905722..33906216,33906579..33907499) /locus_tag="TCM_025648" /note="paralog of Thecc1EG025661t1" /codon_start=1 /product="Benzoyl coenzyme A: Benzyl alcohol benzoyl transferase, putative" /protein_id="EOY10279.1" /db_xref="Phytozome:POPTR_0019s06040.1" /db_xref="TAIR:AT5G17540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GT21" /translation="MAATNPSQILMSTTSTMVPQPTSLVFTVRRCEPELVKPARPTPR ELKLLSDIDDQECLRTQIPIIQFYKYNPSMQGKDPAKVIREALGKTLVFYYPFAGRLR EGPNGKLMVDCTGDGVLFIEADADVKLEQFGEALQPPFPCLDQLLYDVPGSGEILNCP LLLIQVTTMKCGGIIFALRLNHTMADGAGLFQFISAMAEMAQGAISPSILPVWERHLL SCRTPPQVTCTHHEYDKVDDIKSCTNFTPLENMVHRSFFFNPSDITAIRRFVPSHLRH CSTFEVLTACLWRYRTLALQFDPDEQVRLLCIVNVRSKFNPPLPKGYYGNAIVYPVAV TTAGKLCQNPLGYAIELVKQTKKSVTEEYVKSVADFLATKGRPPVSLVRVYLVSDARH AKFSDVDFGWGKAMYGGPAKGVVASFQIPHRNKKGENGLVVPIYLPASAMERFVRELN RMLKDHPAGSRSNSTFIKSTM" gene complement(33908513..33910804) /locus_tag="TCM_025650" /note="dbxref CacaoGD:Thecc1EG025650" mRNA complement(join(33908513..33909900,33910004..33910243, 33910406..33910804)) /locus_tag="TCM_025650" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.43 coverage" CDS complement(join(33908858..33909900,33910004..33910243, 33910406..33910490)) /locus_tag="TCM_025650" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10280.1" /translation="MSFESSLPLLTGVVGALICADLLLEDGKGMCMVVGNGHNVLFWQ DEWIEGVILKDKFPRMFALASNKTGCVNEFGAWVNGDWRWKINLRRSIFYWERAQWTG LLQMIAAVQMRLYGKLFGLVLLRQRWKHFAGRLLEGEVQLKVNWLGDELFITIHLVAF YASKNWKRSTTCFLSVLKHGKIWAAWCKLWDISWVSPPDPSTFFLAWNSVHFVKQNCE IWKMSFFAIVWFIWLARNEVIFNGSNWDSVQTFEIARIRIACWSKSKWKEDCHDFEDS YRCPQHVNVAIKKDQRRNSVVWKKPSTEFLKFNVDGVARENPGKCEIGGVLRDDQGRI LIKFYKNVGLGVANQAEFLAIKEVFLIFAASRWVTTHGLIIESDSTTAIKWIKDPASA PWRLRNHVLHLLSLASKVNQWDIQHILRSGNSIADSLAKAEVERVDDLLIVHPVENNF ELSTF" mobile_element complement(33912685..33913009) /note="source:CACAO_on_E565_scaffold_5 13468 13844" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 33914059..33915828 /locus_tag="TCM_025651" /note="dbxref CacaoGD:Thecc1EG025651" mRNA join(33914059..33914615,33914976..33915828) /locus_tag="TCM_025651" /product="Benzoyl coenzyme A: Benzyl alcohol benzoyl transferase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s07250.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025648t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s06040.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1337t4" CDS join(33914343..33914615,33914976..33915515) /locus_tag="TCM_025651" /note="paralog of Thecc1EG025648t1" /codon_start=1 /product="Benzoyl coenzyme A: Benzyl alcohol benzoyl transferase" /protein_id="EOY10281.1" /db_xref="Phytozome:POPTR_0019s06040.1" /db_xref="TAIR:AT5G17540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GT21" /translation="MQGKDPAKVIWEALGKLVFYYPFAGRLREGPNRKLMVDCTGQGV LFVVANADVKLEQFGEALLPPFPCLTQLLYDAPGSRGMLNRPLLLIQVTWMKCSGIIF ALRLYHTLSDAVGLFQFISAMAEMAQGAISPSIPPVWERHLLSSRTPPQVTCTHREFD KVDDIKSCSIFAPLENMVHLSFFFNPSHISAIRRFVPSHLRHCSAFEVLTACLWRCRT LALPFDPDEQVRLLCIVIVRSKFNPPLPKGYYGNAIVHPVVVTIAGKLCQNP" gene 33916285..33942538 /locus_tag="TCM_025652" /note="dbxref CacaoGD:Thecc1EG025652" mRNA join(33916285..33916524,33924058..33924708, 33925957..33927102,33942293..33942538) /locus_tag="TCM_025652" /product="Benzoyl coenzyme A: Benzyl alcohol benzoyl transferase" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025659t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s06040.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.24 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8656t1" mobile_element 33921240..33922307 /note="source:scaffold_7_CACTA_0789 9236 10285" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33923015..33923090 /note="source:scaffold_7_CACTA_0789 10938 11013" /mobile_element_type="transposon:TIR/CACTA" CDS join(33924180..33924708,33925957..33926855) /locus_tag="TCM_025652" /note="paralog of Thecc1EG025659t1" /codon_start=1 /product="Benzoyl coenzyme A: Benzyl alcohol benzoyl transferase" /protein_id="EOY10282.1" /db_xref="Phytozome:POPTR_0019s06040.1" /db_xref="TAIR:AT5G17540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GT21" /translation="MNYEEQVSIKSSHLAFSSFFAMALLPPTSLVFTVRRHEPELVVP AKPTPRECKLLSDIDDQDGHRFQIRGLHFYRFKPSMQGKDPACIIKEALTKALVFYYP YAGRLREGPNRKLVVDCTGEGVLFIQADADVTLDQFGDSLHPPFPCYKELLYEVPGSN EILNCPLLQIQDIFLQNMKTRIVRSKFNHTMSKAVGQIQFMCAMGEMARGALAPSTPP VRERHLLNARHSPLITCVHDEYDNATLTNGIEMPDNLLHRSFFFGPTQISALYRFVPH NFRCSTFDIVAACLWRCRTKALKLGPNDDVRFICIVNGRSKFNHPLPSGFYGNSLGYP VALTTAGQLCQNPMEYAIELVRQAKAKITEEYMKSTADLMVIRGRPNVNTVRCFMVSD LTRAKFREADFGWGEAEFGEPAYGGDRISFYIPSKNKEGEGGIVVPVCLPAPVMECFV KELDGILSNNEAAVGAENEILRCKI" mobile_element 33926848..33926974 /note="source:CACAO_on_E13_scaffold_3 16 143" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(33926906..33927449) /note="source:CACAO_Again_on_E100_scaffold_4 166 719" /mobile_element_type="transposon:TIR/hAT" gene 33927039..33952402 /locus_tag="TCM_025653" /note="dbxref CacaoGD:Thecc1EG025653" mRNA join(33927039..33927102,33942293..33943116, 33950393..33950805,33951279..33952402) /locus_tag="TCM_025653" /product="Benzoyl coenzyme A: Benzyl alcohol benzoyl transferase" /inference="alignment:exonerate- protein:2:TAIR:AT5G17540.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025659t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s06040.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.32 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8661t1" mobile_element 33927455..33927881 /note="source:CACAO_M_E10495_F87_scaffold_2 6960 7386" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 33927882..33928203 /note="source:CACAO_Again_on_E73_scaffold_3 566 946" /mobile_element_type="transposon:TIR/hAT" mobile_element 33929583..33929661 /note="source:CACAO_on_E13_scaffold_3 1 79" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(33929643..33930361) /note="source:CACAO_Again_on_E100_scaffold_4 116 788" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(33930474..33932799) /note="source:CACAO_M_E44150_F74_scaffold_5 2274 4603" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(33933062..33938712) /note="source:CACAO_M_E44150_F74_scaffold_5 1765 10880" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 33938710..33938801 /note="source:CACAO_Again_on_S_E212_scaffold_6 795 890" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(33939713..33939793) /note="source:CACAO_Again_on_E205_scaffold_9 8485 8568" /mobile_element_type="transposon:TIR/hAT" mobile_element 33939796..33940453 /note="source:CACAO_M_E12258_F281_scaffold_3 1 641" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(33941127..33942920) /note="source:scaffold_4_CACTA_0503 3217 5016" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(33942589..33944893) /note="source:CACAO_M_E86216_F281_scaffold_13 264 9395" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(33942753..33943116,33950393..33950805, 33951279..33952190) /locus_tag="TCM_025653" /note="paralog of Thecc1EG025659t1" /codon_start=1 /product="Benzoyl coenzyme A: Benzyl alcohol benzoyl transferase" /protein_id="EOY10283.1" /db_xref="Phytozome:POPTR_0019s06040.1" /db_xref="TAIR:AT5G17540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GT21" /translation="MRDLITVAHRGDADVDAKPCGVLIDIQGNSAYRDVEAVVTGPMG VSGHDNSVGIIAKGKITLFLGTLAYDLWRSMTLRPGAWKRREGTAPGASRSEVHLLPS ALIGTIECHHALRGGQNSVVRRHEPELVVPAKPTPRECKLLSDIDDQDGHRFQIRGLH FYRFKPSMQGKDPACIIKEALTKALVFYYPYAGRLREGPNRKLVVDCTGEGVLFIQAD ADVTLDQFGDSLHPPFPCYKELLYEVPGSNEILNCPLLQIQVTRLKCGGFILAHRFNH TMNDAVGQSQFMCAMGEMARGALAPSTPPVWERHLLNARHSPLITCVHDEYDNATLTN GIEIPDNLLHRSFFFGPTQISALRRFVPHNLRCSTFDIVTACLWRCRTKALKLGPNDD VRFICIVNVRSKFNPPLPSGFYGNALGYPAALTTAGQLCQNPMEYAIQLVRQAKAKIT EEYMKSTADLMVIRGRPNVNTVRCFMVSDLTRAKFREVDFGWGEAEFGGPAYGGDIIS FYIPSKNKEGEGGIVVPVCLPAPVMESFVKELDGILSNDEAAAGAENEILRCKF" mobile_element complement(33944894..33947982) /note="source:scaffold_5_CACTA_0611 2012 5093" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33947670..33948039 /note="source:CACAO_M_S_E14649_F328_scaffold_2 8422 8790" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(33947981..33948282) /note="source:CACAO_Again_on_E205_scaffold_9 8515 8846" /mobile_element_type="transposon:TIR/hAT" mobile_element 33949342..33950242 /note="source:CACAO_Again_on_E73_scaffold_3 42 946" /mobile_element_type="transposon:TIR/hAT" mobile_element 33952183..33952286 /note="source:CACAO_on_E13_scaffold_3 16 122" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(33952329..33952494) /note="source:CACAO_Again_on_E205_scaffold_9 8507 8668" /mobile_element_type="transposon:TIR/hAT" gene complement(33952386..33958954) /locus_tag="TCM_025654" /note="dbxref CacaoGD:Thecc1EG025654" mRNA complement(join(33952386..33952612,33956094..33956647, 33958889..33958954)) /locus_tag="TCM_025654" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025650t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.19 coverage" mobile_element 33952577..33952612 /note="source:scaffold_7_CACTA_0789 7001 7036" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33953547..33954452 /note="source:CACAO_Again_on_E73_scaffold_3 42 946" /mobile_element_type="transposon:TIR/hAT" CDS complement(33956198..33956587) /locus_tag="TCM_025654" /note="paralog of Thecc1EG025650t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10284.1" /translation="MCMVMGNGHNVLFWQDEWIEGVILKDKFPRMFALASNKTGSVNE FGAWINGDWRWKINLRQSIFDWESAQWSGLLQMIAGITPLCRHLTCIFIILERAQWSG FLSFVQIFVLGEKDVRVVRRLMILDGG" mobile_element 33958881..33959093 /note="source:CACAO_on_E680_scaffold_9 8 250" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(33959292..33959509) /note="source:scaffold_4_CACTA_0482 16794 17011" /mobile_element_type="transposon:TIR/CACTA" mobile_element 33959680..33959842 /note="source:CACAO_Mutator_E1376_scaffold_6 1861 2022" /mobile_element_type="transposon:TIR/Mutator" mobile_element 33959961..33960122 /note="source:CACAO_Mutator_E1376_scaffold_6 1862 2022" /mobile_element_type="transposon:TIR/Mutator" mobile_element 33960489..33960711 /note="source:INTACT897F_F376_scaffold_6-int 3595 3817" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 33960723..33960884 /note="source:CACAO_Mutator_E1376_scaffold_6 1862 2022" /mobile_element_type="transposon:TIR/Mutator" mobile_element 33960960..33961367 /note="source:INTACT897F_F376_scaffold_6-int 4224 4640" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 33961359..33962025 /note="source:CACAO_PIF_E220_scaffold_7 1085 1735" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 33961973..33962215 /note="source:INTACT897F_F376_scaffold_6-int 1166 1397" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(33962202..33962358) /note="source:CACAO_on_SS_E42_scaffold_2 19793 19944" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(33962631..33962721) /note="source:CACAO_on_SS_E42_scaffold_2 19410 19499" /mobile_element_type="transposon:TIR/Mutator" mobile_element 33963029..33966248 /note="source:INTACT42_F19_scaffold_5-int 1 3220" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 33964149..33965764 /locus_tag="TCM_025656" /note="dbxref CacaoGD:Thecc1EG025656" mRNA 33964149..33965764 /locus_tag="TCM_025656" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:frave:gene29238.4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g21940.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043155t1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.33 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc6Loc2489t1_G3" CDS 33964176..33965693 /locus_tag="TCM_025656" /note="paralog of Thecc1EG043155t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10285.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5ACJ6" /translation="MRRELKRKFLPEHYRQEIFIKFHNLRQKTMTVEEYTMEFEQLHM KCDVHEPEEQTVARYLGGLNVEIADVVQLQPYWNLNDVIRLALKVEKQRSRKRSMSSS RQQESISNDESQSSVTIPPPKVNSSKTASSNDKETTFTRASNVNKKCFKCQGFGHIAF DCPNRRIISLVEEEDYANWEKLEPVYDEYDDEEIEEVSADHGEALIVRRNLNTAMMTK DESWLRHNIFYTRCTSQGKVCNVIIDSGSCENVIANYMVEKLKLQTEVHPHPYKLQWL RKGNEVKVTKRCCVQFSIGNKYEDEVWCDIIPMDACHLLLGRPWQYDRRAHHDGYKNT YSFIKDGAKIMLTPLKPENRPKRQEEDKALITVPSLSKAYCESNHLCLLLVSKENKVS SSLSNDGQTKLINQSSGNLSRSFVDNHAVNKTIVKYDFPIPRLDDIFIGSKVFLKMNL KKRDQQIRIRLEDEWKTTFKTMDKLIKWLVWTMTIYGSRYQHGVCPGLLVRAEFF" gene 33966840..33967785 /locus_tag="TCM_025657" /note="dbxref CacaoGD:Thecc1EG025657" mRNA join(33966840..33967176,33967548..33967785) /locus_tag="TCM_025657" /product="Quinolizidine alkaloid O-tigloyltransferase" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025648t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s07240.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1409t5" CDS join(33966901..33967176,33967548..33967715) /locus_tag="TCM_025657" /note="paralog of Thecc1EG025648t1" /codon_start=1 /product="Quinolizidine alkaloid O-tigloyltransferase" /protein_id="EOY10286.1" /db_xref="Phytozome:POPTR_0013s07240.1" /db_xref="TAIR:AT5G17540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A3FK14" /translation="MQGKDPAKVIREALGKTLVFYYPFAGRLRKGRNRKLMVDCIGEG VLFIKVDADVKLEQFGEELLPPFPCLDQLLYNVPSSRGMLNCPLRLIEVTRMKCGGII FALRLNHTMSDAAGLFQFISAMAKMAQGAISPSIPPVWERHLLSC" gene 33968663..33975612 /locus_tag="TCM_025658" /note="dbxref CacaoGD:Thecc1EG025658" mRNA join(33968663..33968699,33970010..33970913, 33974505..33975612) /locus_tag="TCM_025658" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0018s06310.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035493t1" /note="quality class is weak-utrpoor, express is weak, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.24 coverage" CDS join(33970494..33970913,33974505..33974633) /locus_tag="TCM_025658" /note="paralog of Thecc1EG035493t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10287.1" /translation="MMTLREKLTKPKGTKTVSEYFQNLRSVIDELALVNSPVSEDDLV IHALNEIRSDFKQIVVSVRARESFITFEELLDKFTDYEEVIKKQESSTDIIILSAHHA TKPISSHSDLPKHFRPSHNTWFASLSTFSKHSSSTNFKTFQMSKIGNNYQALIVMEKA LDKFRIINGSAGGTGGCQKERE" gene 33975659..33982298 /locus_tag="TCM_025659" /note="dbxref CacaoGD:Thecc1EG025659" mRNA join(33975659..33976321,33976812..33978232, 33982019..33982298) /locus_tag="TCM_025659" /product="Benzoyl coenzyme A: Benzyl alcohol benzoyl transferase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400043778.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025652t1" /inference="similar to AA sequence:frave:gene27512" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02998t00002" CDS join(33975809..33976321,33976812..33977876) /locus_tag="TCM_025659" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene27512; paralog of Thecc1EG025652t1" /codon_start=1 /product="Benzoyl coenzyme A: Benzyl alcohol benzoyl transferase isoform 1" /protein_id="EOY10288.1" /db_xref="TAIR:AT5G17540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GT21" /translation="MNYEEQVSIKSSHLAFSSFFAMALLPPTSLVFTVRRHEPELVVP AKPTPRECKLLSDIDDQDGHRFQIRGLHFYRFKPSMQGKDPACIIKEALTKALVFYYP YAGRLREGPNRKLVVDCTGEGVLFIQADADVTLDQFGDSLHPPFPCYKELLYEVPGSN ELLNCPLLQIQVTRLKCGGFIFAHRFNHTMSDAAGLIQFMCAMGEMARGALAPSTPPV WERHLLNARHSPLITCVHDEYDNATLTNGIEMPDNLLHRSFFFGPTQISALRRFVPHN LRCSTFDIVTACLWRCRTKAMKLGPNDDVRFICIVNARSKFNPPLPSGFYGNALGYPV ALTTAGQLCQNPMEYGIELVRQAKAKITEEYMKSTADLMVIRGRPNVNTVRCFMVSDL TRAKFREVDFGWGEAEFGGPAYGGDRISFYIPSKNKEGEGGIVVPVCLPAPVMESFVK ELDGILSNNEAVVGAENEILSKDEVVAGVENGILPKDEAAARVENEILSKDEAAVGAE NRILILSKDEAAAGAEK" mRNA join(<33975833..33976321,33976812..33977720, 33977805..>33977861) /locus_tag="TCM_025659" /product="Benzoyl coenzyme A: Benzyl alcohol benzoyl transferase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400043778.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025652t1" /inference="similar to AA sequence:Phytozome:Glyma02g00340.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is weak, protein is partial; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1675t5; inference alignment:Newbler:10:TSA:cgbaL_g02998t00002" CDS join(<33975833..33976321,33976812..33977720, 33977805..>33977861) /locus_tag="TCM_025659" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG025652t1" /codon_start=1 /product="Benzoyl coenzyme A: Benzyl alcohol benzoyl transferase isoform 2" /protein_id="EOY10289.1" /db_xref="Phytozome:Glyma02g00340.1" /db_xref="TAIR:AT5G17540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GT21" /translation="IKSSHLAFSSFFAMALLPPTSLVFTVRRHEPELVVPAKPTPREC KLLSDIDDQDGHRFQIRGLHFYRFKPSMQGKDPACIIKEALTKALVFYYPYAGRLREG PNRKLVVDCTGEGVLFIQADADVTLDQFGDSLHPPFPCYKELLYEVPGSNELLNCPLL QIQVTRLKCGGFIFAHRFNHTMSDAAGLIQFMCAMGEMARGALAPSTPPVWERHLLNA RHSPLITCVHDEYDNATLTNGIEMPDNLLHRSFFFGPTQISALRRFVPHNLRCSTFDI VTACLWRCRTKAMKLGPNDDVRFICIVNARSKFNPPLPSGFYGNALGYPVALTTAGQL CQNPMEYGIELVRQAKAKITEEYMKSTADLMVIRGRPNVNTVRCFMVSDLTRAKFREV DFGWGEAEFGGPAYGGDRISFYIPSKNKEGEGGIVVPVCLPAPVMESFVKELDGILSN NEAVVGAENEILSKDEAAVGAENRILILSKDEAAA" mobile_element complement(33981672..33983822) /note="source:CACAO_M_E3969_F127_scaffold_1 12 2160" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(33983558..33983852) /note="source:CACAO_on_E459_scaffold_2 138 428" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 33985307..33999951 /locus_tag="TCM_025661" /note="dbxref CacaoGD:Thecc1EG025661" mRNA join(33985307..33985382,33995786..33996603, 33998678..33999951) /locus_tag="TCM_025661" /product="Benzoyl coenzyme A: Benzyl alcohol benzoyl transferase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s06040.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025665t1" /inference="similar to AA sequence:Phytozome:Glyma02g00340.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1342t2" mobile_element 33989649..33994663 /note="source:CACAO_M_E44170_F10_scaffold_5 1 5015" /mobile_element_type="retrotransposon:LTR/Copia" CDS join(33996163..33996603,33998678..33999601) /locus_tag="TCM_025661" /note="paralog of Thecc1EG025665t1" /codon_start=1 /product="Benzoyl coenzyme A: Benzyl alcohol benzoyl transferase" /protein_id="EOY10290.1" /db_xref="Phytozome:Glyma02g00340.1" /db_xref="TAIR:AT5G17540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GT21" /translation="MATPSLVFAVHRQEPELIAPAKPTPHEYKLLSDIDDQEGLRFQI PVIQFYQYSPSMQGKDPARVIREALAQTLVFYYPFAGRLREGPQRKLMVDCTGEGVMF IEADADVTLEQFGDALQPPFPCLEDLLHDVPGSAGVLNCPLLLIQVTRLRCGGFIFAL RLNHSMSDAAGLTQFMSAVGEMARGWLAPSIRPVWKRHLLGARDPPRVTCKHREYEEV EGTIVPFDEMAHRSFFFGSAELLALRKLVPLHLRKCSRFELLTACLWRCRTIAIQANL EEEVRIICIVNSRSKFNPPLPSGYYGNAFAFPVAVAKAGKLRQNPLGYALELVKQAKA DVTEEYMKSLADLMVIRGRPHFTVVRSYLVSDVTRAGFGDVDFGWGKAVYGGPAKGGV GAIPGLASFLIPSKNKKGEDGIVLPITLPPPAMEIFVKELDGMLKEKPTGIESQSVFI SSSL" gene 34002863..34006404 /locus_tag="TCM_025664" /note="dbxref CacaoGD:Thecc1EG025664" mRNA join(34002863..34003359,34004193..34005369, 34006199..34006404) /locus_tag="TCM_025664" /product="Benzoyl coenzyme A: Benzyl alcohol benzoyl transferase" /inference="alignment:exonerate- protein:2:Phytozome:Glyma02g00340.1.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025665t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s06040.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01209t00002" CDS join(34002913..34003359,34004193..34005104) /locus_tag="TCM_025664" /note="paralog of Thecc1EG025665t1" /codon_start=1 /product="Benzoyl coenzyme A: Benzyl alcohol benzoyl transferase" /protein_id="EOY10291.1" /db_xref="Phytozome:POPTR_0019s06040.1" /db_xref="TAIR:AT5G17540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GT21" /translation="MATPFTSLTFTVRRCEPELVAPAKPTPHECKLLSDIDDQESLHF QVPVIQFYRHNPSMQGKDPVKIIREALAKALVFYYPFAGRLREGPNRKLMVDCTGEGV LFIEADADVTLEQFGDELHPPFPCLDELLYDVPGSEGMLNCPLLLIQITRMKCGGFIF AVRLNHVMSDGAGLKQLVSAVGEMARGMVTPSIPPVWERHLLDAGDPPRVMFTHHEYD EVEGIITPPDNMVQRAFFFGPNEISSLRRLLPRHLRQCSKFELLTACLWRCRTAAINP DPDDEVRMMCIANTRSKFNPPLPSGYYGNAFVFPAAKTTARKLFRNPLGYAVELVKQA KARVTEEYVKSVSSLMVIRDKQLHFPVVRSFLISDVTSFGFGDVDYGWGKAVFGGPAK AVGPISFLIQSKDKNGEVGTLVSICLPAPAMESFAKELDNILKGQPVEDVGKPIKISS AM" mobile_element complement(34006685..34007729) /note="source:CACAO_M_E85278_F18_scaffold_10 502 1550" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 34009519..34012454 /locus_tag="TCM_025665" /note="dbxref CacaoGD:Thecc1EG025665" mRNA join(34009519..34010118,34011040..34012454) /locus_tag="TCM_025665" /product="Benzoyl coenzyme A: Benzyl alcohol benzoyl transferase" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01024259001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025664t1" /inference="similar to AA sequence:Phytozome:Glyma02g00340.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8691t1" CDS join(34009672..34010118,34011040..34011966) /locus_tag="TCM_025665" /note="paralog of Thecc1EG025664t1" /codon_start=1 /product="Benzoyl coenzyme A: Benzyl alcohol benzoyl transferase" /protein_id="EOY10292.1" /db_xref="Phytozome:Glyma02g00340.1" /db_xref="TAIR:AT5G17540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GT21" /translation="MAPLSTSLVFTVRRCEPELVGPAKPTPNECKRLSDIDDQESFRF QVPVIQFYRYNPCMQGKDPAMIVREALAQALVFYYPLAGRLREGPNRKLMVDCNGEGA LFVEADADVTLEQFGDALQPPFPCLHELLYDTPSSEGMLNSPLLFIQVTRLRCGGFIF AISLNHVMSDASGMIQFMFAMAEIAHGAAPLIPPVWERHLLDARDPPRAAFTHHEYDQ VEAASITPSENTVHRSFFFGPNEVSTLRRLLPEHLCKCSRFELLAACLWRCRTIAIKP DPEEEVRMLSMVNVRRKFNPPLPSGYYGNAVAFPAAITTARKLCQNPLGYAVKLVKQA KESVTEEYVKSVAALMVIKGRPHYPTVRSCLISDLTRAGFGEVDFGWGKAVYGGLPKA GLGATLHAPSSFLIAVKNKKGEAGIAMPICLPAPAMERFAKELDSLLEEQLVEVESKS VFISSAL" mobile_element 34012295..34012872 /note="source:CACAO_Helitron_E81_scaffold_3 2558 3100" /mobile_element_type="transposon:Helitron" mobile_element complement(34013737..34013871) /note="source:INTACT639F_F363_scaffold_5-int 8384 8579" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 34013872..34014354 /note="source:CACAO_PIF_E278_scaffold_9 3743 4276" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(34013958..34014384) /note="source:CACAO_on_E617_scaffold_6 726 1193" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(34014385..34015010) /note="source:INTACT639F_F363_scaffold_5-int 7467 8383" /mobile_element_type="retrotransposon:LTR/Copia" gene 34015124..34018855 /locus_tag="TCM_025666" /note="dbxref CacaoGD:Thecc1EG025666" mRNA join(34015124..34015602,34016656..34016723, 34018041..34018494,34018653..34018855) /locus_tag="TCM_025666" /product="BolA-like family protein" /inference="alignment:exonerate- protein:2:ricco:30148.m001457" /inference="similar to AA sequence:ricco:30148.m001457" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14567t1" CDS join(34015273..34015602,34016656..34016723, 34018041..34018194) /locus_tag="TCM_025666" /note="dbxref ricco:30148.m001457" /codon_start=1 /product="BolA-like family protein" /protein_id="EOY10293.1" /db_xref="TAIR:AT5G17560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SDE8" /translation="MAKTLVTTRPYIIFSSTKTNIFVKSFPLFTHSSKSFTSQATLLA TKNHSNSGLFWSSDINKPINNDDKNNRVVSKTGFGILGHRKFSIKATHVNDPGSIDSP LMQSMEKKIKEHLNAESVIVKDASGDGRHVCIDVVSSAFEGQSIVNRQRMVYKAIWEE LQSTVHAVDQMTTKTPSEATSQK" gene 34020875..34021949 /locus_tag="TCM_025667" /note="dbxref CacaoGD:Thecc1EG025667" mRNA 34020875..34021949 /locus_tag="TCM_025667" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30148.m001456" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc5223t1" CDS 34021236..34021463 /locus_tag="TCM_025667" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10294.1" /translation="MGTPLVRRLKETLLKLIILSFCLLRRLKSWILYTAPLLPGRRRR SDRNNRKKMARLICLVAIEKTEVLMNDGVCL" mobile_element complement(34021923..34021965) /note="source:scaffold_4_CACTA_0511 7142 7183" /mobile_element_type="transposon:TIR/CACTA" gene complement(34022629..34030970) /locus_tag="TCM_025668" /note="dbxref CacaoGD:Thecc1EG025668" mRNA complement(join(34022629..34023256,34023375..34023465, 34024464..34024622,34025723..34025891,34026560..34027591, 34028830..34029107,34029274..34029582,34029748..34030819)) /locus_tag="TCM_025668" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s07150.1" /inference="similar to AA sequence:ricco:30148.m001452" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc602t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc605t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc533t9" mRNA complement(join(34022629..34023256,34023375..34023465, 34024464..34024622,34025723..34025891,34026560..34027591, 34028830..34029113,34029274..34029582,34029748..34030819)) /locus_tag="TCM_025668" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s07150.1" /inference="similar to AA sequence:ricco:30148.m001452" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc602t6; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc605t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc533t9" mobile_element complement(34022745..34022770) /note="source:scaffold_10_CACTA_0139 782 826" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(34022771..34022810) /note="source:INTACT90_F13_scaffold_4-int 1997 2036" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA complement(join(34022937..34023256,34023375..34023631, 34024465..34024622,34025723..34025891,34026560..34027591, 34028830..34029113,34029274..34029582,34029748..34030970)) /locus_tag="TCM_025668" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s07150.1" /inference="similar to AA sequence:ricco:30148.m001452" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc605t1" CDS complement(join(34023389..34023465,34024464..34024622, 34025723..34025891,34026560..34027591,34028830..34029107, 34029274..34029582,34029748..34030579)) /locus_tag="TCM_025668" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30148.m001452" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 3" /protein_id="EOY10297.1" /db_xref="TAIR:AT5G35970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FGC2" /translation="MEKASCLFCGSIPSTTTRTLALSVQRSSFSSSLPLSFSSSSSPV KSICLFVGHKYNYPSTKFQSKQLVCNGSSSSSRSSRKFTTATKKKPRSKSNVASKPKI SENDNDGISSKSTSKPSSSCSSTKIIVEELGLLKNQKQEKVKKTKAVNVRTLYQNGDP LGRRDLGKRVIRWISEGMKAMASDFVTAELQGEFLELRQRMGPGLTFVIQAQPYLNAI PIPLGLEAICLKACTHYPTLFDHFQRELRNILQELQQNSVVEDWRETESWKLLKELAN SAQHRAIARKITQPKPVQGVLGMDLEKAKAMQGRIDEFTKQMSELLRIERDAELEFTQ EELNAVPTPDEGSDSSKPIEFLVSHGQAQQELCDTICNLNAVSTSTGGMHLVLFRVEG NHRLPPTTLSPGDMVCVRICDSRGAGATSCMQGFVDNLGEDGCSISVALESRHGDPTF SKFFGKNVRIDRIQGLADALTYERNCEALMLLQKNGLQKKNPSIAVVATLFGDKEDVT WLEKNSYADWNEAKLDGLLQNGTFDDSQQRAIALGLNKKRPILVVQGPPGTGKTGLLK EVIALAVQQGERVLVAAPTNAAVDNMVEKLSNIGLNIVRVGNPARISSAVASKSLAEI VNSKLADYLAEFERKKSDLRKDLRHCLKDDSLAAGIRQLLKQLGKALKKKEKETVREV LSSAQVVLSTNTGAADPLIRRMDTFDLVVIDEAGQAIEPSCWIPILQGKRCILAGDQC QLAPVILSRKALEGGLGVSLLERAATMHEGVLATMLTTQYRMNDAIAGWASKEMYDGE LKSSPSVGSHLLVDSPFVKPTWITQCPLLLLDTRMPYGSLSVGCEEHLDPAGTGSFYN EGEADIVVQHVFYLIYAGVSPTAIAVQSPYVAQVQLLRDRLDEFPEAAGVEVATIDSF QGREADAVIISMGVKHAEPGTSGGSGLGMDPMLPSIS" CDS complement(join(34023389..34023631,34024465..34024622, 34025723..34025891,34026560..34027591,34028830..34029113, 34029274..34029582,34029748..34030579)) /locus_tag="TCM_025668" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30148.m001452" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /protein_id="EOY10295.1" /db_xref="TAIR:AT5G35970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FGC2" /translation="MEKASCLFCGSIPSTTTRTLALSVQRSSFSSSLPLSFSSSSSPV KSICLFVGHKYNYPSTKFQSKQLVCNGSSSSSRSSRKFTTATKKKPRSKSNVASKPKI SENDNDGISSKSTSKPSSSCSSTKIIVEELGLLKNQKQEKVKKTKAVNVRTLYQNGDP LGRRDLGKRVIRWISEGMKAMASDFVTAELQGEFLELRQRMGPGLTFVIQAQPYLNAI PIPLGLEAICLKACTHYPTLFDHFQRELRNILQELQQNSVVEDWRETESWKLLKELAN SAQHRAIARKITQPKPVQGVLGMDLEKAKAMQGRIDEFTKQMSELLRIERDAELEFTQ EELNAVPTPDEGSDSSKPIEFLVSHGQAQQELCDTICNLNAVSTSTGLGGMHLVLFRV EGNHRLPPTTLSPGDMVCVRICDSRGAGATSCMQGFVDNLGEDGCSISVALESRHGDP TFSKFFGKNVRIDRIQGLADALTYERNCEALMLLQKNGLQKKNPSIAVVATLFGDKED VTWLEKNSYADWNEAKLDGLLQNGTFDDSQQRAIALGLNKKRPILVVQGPPGTGKTGL LKEVIALAVQQGERVLVAAPTNAAVDNMVEKLSNIGLNIVRVGNPARISSAVASKSLA EIVNSKLADYLAEFERKKSDLRKDLRHCLKDDSLAAGIRQLLKQLGKALKKKEKETVR EVLSSAQVVLSTNTGAADPLIRRMDTFDLVVIDEAGQAIEPSCWIPILQGKRCILAGD QCQLAPVILSRKALEGGLGVSLLERAATMHEGVLATMLTTQYRMNDAIAGWASKEMYD GELKSSPSVGSHLLVDSPFVKPTWITQCPLLLLDTRMPYGSLSVGCEEHLDPAGTGSF YNEGEADIVVQHVFYLIYAGVSPTAIAVQSPYVAQVQLLRDRLDEFPEAAGVEVATID SFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAVTRARKHVAVVCDSSTICHNTFL ARLLRHIRYFGRVKHAEPGTSGGSGLGMDPMLPSIS" CDS complement(join(34023389..34023465,34024464..34024622, 34025723..34025891,34026560..34027591,34028830..34029113, 34029274..34029582,34029748..34030579)) /locus_tag="TCM_025668" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30148.m001452" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /protein_id="EOY10296.1" /db_xref="TAIR:AT5G35970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FGC2" /translation="MEKASCLFCGSIPSTTTRTLALSVQRSSFSSSLPLSFSSSSSPV KSICLFVGHKYNYPSTKFQSKQLVCNGSSSSSRSSRKFTTATKKKPRSKSNVASKPKI SENDNDGISSKSTSKPSSSCSSTKIIVEELGLLKNQKQEKVKKTKAVNVRTLYQNGDP LGRRDLGKRVIRWISEGMKAMASDFVTAELQGEFLELRQRMGPGLTFVIQAQPYLNAI PIPLGLEAICLKACTHYPTLFDHFQRELRNILQELQQNSVVEDWRETESWKLLKELAN SAQHRAIARKITQPKPVQGVLGMDLEKAKAMQGRIDEFTKQMSELLRIERDAELEFTQ EELNAVPTPDEGSDSSKPIEFLVSHGQAQQELCDTICNLNAVSTSTGLGGMHLVLFRV EGNHRLPPTTLSPGDMVCVRICDSRGAGATSCMQGFVDNLGEDGCSISVALESRHGDP TFSKFFGKNVRIDRIQGLADALTYERNCEALMLLQKNGLQKKNPSIAVVATLFGDKED VTWLEKNSYADWNEAKLDGLLQNGTFDDSQQRAIALGLNKKRPILVVQGPPGTGKTGL LKEVIALAVQQGERVLVAAPTNAAVDNMVEKLSNIGLNIVRVGNPARISSAVASKSLA EIVNSKLADYLAEFERKKSDLRKDLRHCLKDDSLAAGIRQLLKQLGKALKKKEKETVR EVLSSAQVVLSTNTGAADPLIRRMDTFDLVVIDEAGQAIEPSCWIPILQGKRCILAGD QCQLAPVILSRKALEGGLGVSLLERAATMHEGVLATMLTTQYRMNDAIAGWASKEMYD GELKSSPSVGSHLLVDSPFVKPTWITQCPLLLLDTRMPYGSLSVGCEEHLDPAGTGSF YNEGEADIVVQHVFYLIYAGVSPTAIAVQSPYVAQVQLLRDRLDEFPEAAGVEVATID SFQGREADAVIISMGVKHAEPGTSGGSGLGMDPMLPSIS" mobile_element complement(34031640..34031920) /note="source:CACAO_M_S_E5285_F300_scaffold_1 17567 17893" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(34031958..34032313) /note="source:scaffold_1_CACTA_0008 959 1353" /mobile_element_type="transposon:TIR/CACTA" gene 34032365..34037153 /locus_tag="TCM_025669" /note="dbxref CacaoGD:Thecc1EG025669" mRNA join(34032365..34032800,34032925..34032998, 34033081..34033162,34033452..34033502,34034015..34034115, 34035843..34035996,34036070..34036303,34036754..34037153) /locus_tag="TCM_025669" /product="TatD related DNase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s07140.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025677t1" /inference="similar to AA sequence:TAIR:AT5G17570.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14570t1" CDS join(34032678..34032800,34032925..34032998, 34033081..34033162,34033452..34033502,34034015..34034115, 34035843..34035996,34036070..34036303,34036754..34036870) /locus_tag="TCM_025669" /note="paralog of Thecc1EG025677t1" /codon_start=1 /product="TatD related DNase" /protein_id="EOY10298.1" /db_xref="TAIR:AT5G17570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A2RVM4" /translation="MKLFDVHCHLQDPRILNKAPKLISTALESGVLNFAVNGVSERDW HLVKEMGDKYPSVIPCFGVHPWYVAERSPSWFSTLKEFFETTPAAAVGEIGLDKGSRG REIDFNDQIEVFRQQLELAKELKKPASVHCVRAFGDLLQIMKDIGPFPDGIILHSYLG SAEMVPEFAKSGAYFSLSGYVMPMKTQKAKKMLKAIPSERILLESDAPDALPNSELGS LFLVDEDPSLPQEFFAQGRSSASNVCTPSDHQSLASRDASALPKEMLNHPANIHNVLD YVASLLEMRKEELAELSYRNAVQLFSYQGSKVPLE" gene complement(34039290..34043992) /locus_tag="TCM_025670" /note="dbxref CacaoGD:Thecc1EG025670" mRNA complement(join(34039290..34040172,34043862..34043992)) /locus_tag="TCM_025670" /product="Agamous-like MADS-box protein A" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025671t1" /inference="similar to AA sequence:Phytozome:GSVIVT01031333001" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.26 coverage" CDS complement(34039465..34040166) /locus_tag="TCM_025670" /note="paralog of Thecc1EG025671t1" /codon_start=1 /product="Agamous-like MADS-box protein A" /protein_id="EOY10299.1" /db_xref="Phytozome:GSVIVT01031333001" /db_xref="TAIR:AT5G48670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7UAA8" /translation="MTRNTVKISYITKDSARKATFKKRKKGLLKKASELSTLCGIDAS VIIYSPYNTQPEVWPSPTEAERVLSKFKKMPKMDQSMEMMSQESFLKRRIELANKQLK KQCRDNREEEITQVMFQCLAGQGLENLNMMDLNDLGWLLEQNMKDIDRRIYMLTKASH SQRSVAAASATMATPEAMLKSGEKVHVDSPEREVSPETEQRQQLIKDLMHSPENIGLD SVLSFGDNNPIAFFP" gene complement(34044546..34045642) /locus_tag="TCM_025671" /note="dbxref CacaoGD:Thecc1EG025671" mRNA complement(34044546..34045642) /locus_tag="TCM_025671" /product="Agamous-like MADS-box protein A" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025670t1" /inference="similar to AA sequence:Phytozome:GSVIVT01031333001" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.24 coverage" CDS complement(34044835..34045536) /locus_tag="TCM_025671" /note="paralog of Thecc1EG025670t1" /codon_start=1 /product="Agamous-like MADS-box protein A" /protein_id="EOY10300.1" /db_xref="Phytozome:GSVIVT01031333001" /db_xref="TAIR:AT5G48670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7UAA8" /translation="MTRKKMKLSYITKDSARKATFRKRKKGLLKKASELSTLCGIEAS VIIYSPYDAQPEVWPSPAGAQRVLSEFKNMPKMDQSMGMMSQKSFLQQRIELANKQLK RQWRDNREKEITQVMFQCLAGQGLENLNMMDLNDLGWLLEQNLKDIDRRISMFPQASQ SQGSVATASATMTTPEAMLKSGEKAQVKSPERGVSPETEQRQQLIKDLMHSPEDMGLD SVLSFGDNNPIAFFP" gene 34046403..34054952 /locus_tag="TCM_025672" /note="dbxref CacaoGD:Thecc1EG025672" mRNA join(34046403..34046553,34054372..34054462, 34054599..34054952) /locus_tag="TCM_025672" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025669t1" /note="quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete" mobile_element complement(34048834..34048881) /note="source:CACAO_M_E69460_F12_scaffold_9 22475 22523" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(34051531..34052897) /locus_tag="TCM_025674" /note="dbxref CacaoGD:Thecc1EG025674" mRNA complement(join(34051531..34052519,34052625..34052897)) /locus_tag="TCM_025674" /product="AGAMOUS-like 80, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026845t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s00420.1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(join(34052235..34052519,34052625..34052792)) /locus_tag="TCM_025674" /note="paralog of Thecc1EG026845t1" /codon_start=1 /product="AGAMOUS-like 80, putative" /protein_id="EOY10302.1" /db_xref="Phytozome:POPTR_0005s00420.1" /db_xref="TAIR:AT5G48670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7UAA8" /translation="MTRKKVKLSYITKDSARKSTFKKGKKGLLKKASELSTLCGIEGF MIIYNPYDAQLEQRIEQANKQLKRQCRDNREKETTQVMFQCLAKQGLEILNVTDLSDL GWLLEQNLKDIDKKIYTLAKPSHSQSFAPAASTTMATPETMLKSGGKV" CDS join(34054392..34054462,34054599..34054749) /locus_tag="TCM_025672" /note="paralog of Thecc1EG025669t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10301.1" /translation="MASFFILTLVPEFAKSGAYFSLSGILLESDAPDALSNSELGSLF LVSEDTSLPQEFFAQGRSSASNVSTPSNH" mobile_element complement(34056394..34056444) /note="source:scaffold_9_CACTA_0943 646 694" /mobile_element_type="transposon:TIR/CACTA" mobile_element 34056505..34060361 /note="source:INTACT878F_F10_scaffold_5-int 1 3857" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 34061070..34061277 /note="source:CACAO_on_E6_scaffold_1 1 210" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(34061280..34061738) /note="source:CACAO_hAT_E1792_scaffold_4 20 489" /mobile_element_type="transposon:TIR/hAT" mobile_element 34061421..34061778 /note="source:CACAO_on_E71_scaffold_9 2685 3009" /mobile_element_type="transposon:TIR/hAT" mobile_element 34062876..34063867 /note="source:CACAO_hAT_E2507_scaffold_5 1 992" /mobile_element_type="transposon:TIR/hAT" gene complement(34063826..34064312) /locus_tag="TCM_025676" /note="dbxref CacaoGD:Thecc1EG025676" mRNA complement(34063826..34064312) /locus_tag="TCM_025676" /product="Mads box protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026845t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s00420.1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(34063961..34064272) /locus_tag="TCM_025676" /note="paralog of Thecc1EG026845t1" /codon_start=1 /product="Mads box protein, putative" /protein_id="EOY10303.1" /db_xref="Phytozome:POPTR_0005s00420.1" /db_xref="TAIR:AT5G48670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RFR5" /translation="MTRKKVKLSYITKNSARKATFKKRKKGLLKKASELSALCGTEAS VIIYSLSNTQPEVWPSPAGAQQMLSEFKKMPKMDQSMGMMSQESFLRERITKDNIQLK R" mobile_element 34065863..34065926 /note="source:CACAO_M_E12463_F12_scaffold_3 4620 4691" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(34065872..34065958) /note="source:CACAO_M_S_E31635_F14_scaffold_3 3161 3247" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34067644..34068005 /note="source:scaffold_8_CACTA_0867 7805 8185" /mobile_element_type="transposon:TIR/CACTA" mobile_element 34068492..34069247 /note="source:scaffold_2_CACTA_0244 14247 14697" /mobile_element_type="transposon:TIR/CACTA" gene 34070252..34075965 /locus_tag="TCM_025677" /note="dbxref CacaoGD:Thecc1EG025677" mRNA join(34070252..34070605,34070931..34071004, 34071100..34071181,34071956..34072009,34072146..34072246, 34072421..34072574,34072662..34072775,34073683..34073852, 34075735..34075965) /locus_tag="TCM_025677" /product="TatD related DNase, putative" /inference="alignment:exonerate- protein:2:TAIR:AT3G03500.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025669t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s07140.2" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8718t3" CDS join(34070390..34070605,34070931..34071004, 34071100..34071181,34071956..34072009,34072146..34072246, 34072421..34072574,34072662..34072775,34073683..34073799) /locus_tag="TCM_025677" /note="paralog of Thecc1EG025669t1" /codon_start=1 /product="TatD related DNase, putative" /protein_id="EOY10304.1" /db_xref="Phytozome:POPTR_0013s07140.2" /db_xref="TAIR:AT3G03500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A2RVM4" /translation="MKELSIKILSISLAVFSIISSEANLKSMAMKMKLFDAHCHLQDQ RIIDKAPQLIATAYGAGVVYFAVNGITEKDWHLVKEMSDEYCSVIPNFGLHPWFVQGK SPSWFSTLKEFFEANPSAAVGEIGLDKSPLAPKGVDFADQIEVFKKQIKLAKELERPA SVHCLDAFPELLRIMKDIGPFPSGVILHSFQGPPEVVPELTKLGSYFSFSGHLMPLQE NKARKVVKAVPLDRILLETDSPDGLPKNPLFLVPGNDTLNQPANVHSVLIYVASLLEM SKEELAEISYKNAVRLFSFQGSKIPLE" gene complement(34074085..34076049) /locus_tag="TCM_025678" /note="dbxref CacaoGD:Thecc1EG025678" mRNA complement(join(34074085..34074497,34074574..34074622, 34074771..34075256,34075350..34075450,34075540..34076049)) /locus_tag="TCM_025678" /product="Ubiquitin carboxyl-terminal hydrolase family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s23240.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043214t1" /inference="similar to AA sequence:Phytozome:Glyma09g03580.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.58 coverage" CDS complement(join(34074349..34074497,34074574..34074622, 34074771..34075256,34075350..34075450,34075540..34075999)) /locus_tag="TCM_025678" /note="paralog of Thecc1EG043214t1" /codon_start=1 /product="Ubiquitin carboxyl-terminal hydrolase family protein, putative" /protein_id="EOY10305.1" /db_xref="Phytozome:Glyma09g03580.1" /db_xref="TAIR:AT2G39120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HLI2" /translation="MFFQNSNSKTHFKKLIFISKFSIISPFNHQKPPFRYSQNHNYVN VYMKWKKDPFFDSTVHIHKSIELKLIIQLKNLIAKDPNGCIPISAVSKRGEEFDISIK IARFLRQYPSVFEEFRGPEYILPWFRLTQKLLRIIERRKGYLRNARRIRRIGFLEDSK GNVDESFTFMDMEDELKGLAVESEGEKGLRLKRKIEGWLKEFQKLPYVSPYEDFSHLD RNSDAAERRVEGILHELLSLFVEHSAQRKKLLCLKKYFELPQKVHKAFERHPHMFYLS FKNKTCTAILKEAYCGKSSMERHPLLGVRKKYIRLVKESGRILKNSRINNRFIKQEKV EKDLDMDSESDDRTETLELTIALKVASPGPVVSEGLKFLPQCYQSFYFEDPVAAVPLP SEAKKSNKNMKKRLKEEYSIED" gene 34077477..34080569 /locus_tag="TCM_025679" /note="dbxref CacaoGD:Thecc1EG025679" mRNA join(34077477..34077671,34078148..34078455, 34078566..34078635,34078731..34080569) /locus_tag="TCM_025679" /product="Phototropic-responsive NPH3 family protein, putative" /inference="alignment:exonerate- protein:2:ricco:30148.m001450" /inference="similar to AA sequence:ricco:30148.m001450" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.22 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8722t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8726t1" CDS join(34078421..34078455,34078566..34078635, 34078731..34080335) /locus_tag="TCM_025679" /note="dbxref ricco:30148.m001450" /codon_start=1 /product="Phototropic-responsive NPH3 family protein, putative" /protein_id="EOY10306.1" /db_xref="TAIR:AT5G17580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I6S2" /translation="MTERRHKDTSSWMSKPAPSTELEAHLGSVPFTLDKELLASKSAK VAALLKENSHESLSYLLRDIPADAETFELVARFCHGYEVHMSTENIVPLICLSFYLGM DENHSSNNLLSKAVTFFEQRVLPSWNEVIKALHVSEKFLQQTMQLGLFDACLQTMIAK ASDNPRLLGEPIKLSTNYNDTEDGDDSYRPNARRRLFVLDWQEGLTTLPLQLYEPIIY AMNQHEIPPEYISASIYQYAKKWIFSCDIGVETTSIYKRKSQRNVIETLERLLPHGRE LLPCTLLFEMLRGAIDLEASSACRNGLEIRIGKQLDQAKVKDLLIPSQGYTKEVQYDI EYIRRILKIFYGNYKSSDVSGLIIVAELVEEFLAEIAGDTDLMIDTFISLAEMSMAAA LGIQRNSDGIYRAIDIYLDKHTYLTEKEKEHVCRVLDFRKLSPEACEHAAKNERLPVR VVVQVLFMAQLQLRDTLTKEVRGYDDKLGKEEEEEEANMGCREDKVRMEMEKMSIKVK ELEKECNVMKKEITSSNSRQKVKKGKVNMWKEMKRKFGCMSSMNDFHCQVKKKKVHPK LGI" gene complement(34081483..34084472) /locus_tag="TCM_025680" /note="dbxref CacaoGD:Thecc1EG025680" mRNA complement(join(34081483..34082401,34083888..34083985, 34084078..34084472)) /locus_tag="TCM_025680" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene09228" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.33 coverage" CDS complement(join(34081896..34082401,34083888..34083985, 34084078..34084205)) /locus_tag="TCM_025680" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10307.1" /translation="MATHIQMAHSPCSTLQGLQDELGGASYIAKVIPENPSDASRASG GGELLRLSIQRSVGVCLICHFPLHHKESLKKGGVFLCLYMFRPDEESAPWYPVAGIIL VGIPWIFWIGAYAYRCCAYSCCQNGGGNVNRAHISSAKTQTYASPGPAARSMRSSEYE NSPLKSPNGDHRHVHFGEVVVMGSAKNDQNDNGDENPHEGAKGYSETEQEGKEHSQDN TASDKDYVSAASRKGEAPLIVTVSS" gene 34082837..34084503 /locus_tag="TCM_025681" /note="dbxref CacaoGD:Thecc1EG025681" mRNA join(34082837..34083128,34083491..34083601, 34083779..34083850,34083973..34084503) /locus_tag="TCM_025681" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020361t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.52 coverage" CDS join(34082903..34083128,34083491..34083601, 34083779..34083780) /locus_tag="TCM_025681" /note="paralog of Thecc1EG020361t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10308.1" /translation="MDLELKNHALLNKCLWRYANEPDSLWRKVIWAKNRLDPGSMLPS SKPHRPSLFRNQISKSLQLSNRYHDLVTMNFGSAPPKVESFCWQVLKGKMGAKSILME RGLMIDDEAK" gene complement(34083875..34102222) /locus_tag="TCM_025682" /note="dbxref CacaoGD:Thecc1EG025682" mRNA complement(join(34083875..34084924,34085006..34085115, 34085811..34085855,34086115..34086174,34086414..34086478, 34086606..34086690,34088928..34088987,34090301..34090409, 34091757..34091800,34095202..34095288,34095397..34095472, 34096607..34097292,34097704..34098426,34098906..34099109, 34099880..34100076,34101122..34101619,34101852..34102222)) /locus_tag="TCM_025682" /product="AMP-dependent synthetase and ligase family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01011337001" /inference="similar to AA sequence:Phytozome:GSVIVT01011337001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8774t3" CDS complement(join(34084696..34084924,34085006..34085115, 34085811..34085855,34086115..34086174,34086414..34086478, 34086606..34086690,34088928..34088987,34090301..34090409, 34091757..34091800,34095202..34095288,34095397..34095472, 34096607..34097292,34097704..34098426,34098906..34099109, 34099880..34100076,34101122..34101619,34101852..34102161)) /locus_tag="TCM_025682" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="AMP-dependent synthetase and ligase family protein, putative isoform 1" /protein_id="EOY10309.1" /db_xref="Phytozome:GSVIVT01011337001" /db_xref="TAIR:AT5G35930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K1G2" /translation="MVRPEDEHEKQRQHCCISHEFYRAASKNPEKIAVIHASSSSKPS AGGVQIDRELIGGGNPPVYKGDQCFTFATLLASVDCLSFRLRSILEGADDPYLIKSQP PGDNGKHTVPVQTSEASLTFMQEVGRHTELENTYIPKIVGLFMPPSVEYVISVLSVLK CGEAFLPLDPSWPRDRILSIVDSSNAALVIACGSSFGKSGCEPLDQSHWLLECSSCPV LCFSMEESSEKNNIESSFGWPCENERKRLFCYLMYTSGSTGNPKGVCGTEQGLLNRFL WMQELYPMHGEELLLFKTSISFVDHLQEFLAASLTACTLVVPPLTELRQNVFSIIEFL EAYSINRLTAVPSLMRVILPAMQSQHDNLISSSLRLLVLSGEVLPLALWNMLSSLLPK TSVLNLYGSTEVSGDCMYFDCKRLPSILEMQTLTTVPIGLPISKCSIVLNGENSNPNE GEIYVRGLCVSIGYFSENAIIPLNNAKLHQNSLCKCSMEACGSQVYFRTGDFAHQLPS GDLVFLGRKDRTVKVNGQRIALEEVENTLRGHNDVIDAAVISHKDQGEDALIVAFILL REKEESGEMFKTSIRNWMISKLPTAMVPTHFVFVKSLPMSASGKVDYTVLVESILSKS HVQDEISNIGPSNLMQVIKKAFCEALMVEDVSDDDDFFMIGGNSIAAAHVSHNLGIDM RLLYTFSTPAKLLITLVEKKGSKNTNFRIKDNAELIIQPDKGSAYSSVESETPDPLGS KLQRTLSWTLYERNDDQAVRSKRLKVDSNKYYILDPVHLFNGYPWNSASILKSCSFSR CNKVMRAGENEVNDTWQVAQSVEVPRTRTGYMQELWKVHMESCVDASPLIVFKDSDIY LFVGSHSHKFLCVNAQSGSIQWETRLQGRVEGSAAIVGDFSQVVVGCYDGNLYFLEFL NGNICWTFHTSGEVKCQPIMDNHRGLIWCGSHDRNLYALDYRNRCCVCKLPCGGSIFG SPAIDEVHHALYMASTSGRVTAISIKELPFCTLWSYELEVPVFGSLSISPRHGYVICC LVDGHVVALDSSGSIVWKRRTGGPIFAGACISYALPSQVLICSRNGSVYSFEMEKGEL LWEINVGDPITASAYVDENLQLISNPTISVDRLVCVCTSSGSILLLRISLDEGKGSHQ RKYMVQEFVRLKLEGDLFSSPVMIGGRIFVGCRDDYLHCIAVETQESVG" mRNA complement(join(34085091..34085115,34085811..34085855, 34086115..34086174,34086414..34086478,34086606..34086690, 34088928..34088987,34090301..34090409,34091757..34091800, 34095202..34095288,34095397..34095459,34096607..34097292, 34097704..34098426,34098906..34099109,34099880..34100076, 34101122..34101589)) /locus_tag="TCM_025682" /product="AMP-dependent synthetase and ligase family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01011337001" /inference="similar to AA sequence:Phytozome:GSVIVT01011337001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1553t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8774t3; inference alignment:Newbler:10:TSA:cgbaB_g02781t00001" mobile_element 34086905..34088863 /note="source:CACAO_M_E44172_F105_scaffold_5 1 1959" /mobile_element_type="retrotransposon:LTR/Unclassified" gene 34087214..34088881 /locus_tag="TCM_025683" /note="dbxref CacaoGD:Thecc1EG025683" mRNA join(34087214..34088098,34088166..34088881) /locus_tag="TCM_025683" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018982t1" /inference="similar to AA sequence:Phytozome:Glyma15g17820.1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.45 coverage" CDS join(34087386..34088098,34088166..34088448) /locus_tag="TCM_025683" /note="paralog of Thecc1EG018982t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10311.1" /db_xref="Phytozome:Glyma15g17820.1" /translation="MAFANFNAAASPVLTGENYPIWVAKMNAYLHAFNLWEIVDVGGN RLEMRQSNPTIAHLKQHSEEIAKKYKALYCIHFAIFNLIFTHIIDCGFAKEAWDKLKV EFHGSDRTCQIQVLNLLREFEVLKMNNEESVKDYLEKVLKVVNQLSLLGENLLERRIV NKFLISLPKKFETKKSTLEDSKDMSTMTMTKLVNALPAQEQKRAFRQKDHVKNALLAC ASEKKNGDKRREAKGSIPSMSCNQLSHMKKVCKNKTDQGEEKAVVVEEHEVNEEVLFM AKMPERSISSRAWEDMSALQQHVASFDQDNDGIIYPWETYKDKHGSDSRTYDSEG" mobile_element 34089725..34089953 /note="source:CACAO_M_E11932_F188_scaffold_2 1 233" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 34092168..34092972 /note="source:CACAO_M_E44173_F2_scaffold_5 1 805" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(34095240..34095288,34095397..34095459, 34096607..34097292,34097704..34098426,34098906..34099109, 34099880..34100076,34101122..34101563)) /locus_tag="TCM_025682" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="AMP-dependent synthetase and ligase family protein, putative isoform 2" /protein_id="EOY10310.1" /db_xref="Phytozome:GSVIVT01011337001" /db_xref="TAIR:AT5G35930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K1G2" /translation="MQEVGRHTELENTYIPKIVGLFMPPSVEYVISVLSVLKCGEAFL PLDPSWPRDRILSIVDSSNAALVIACGSSFGKSGCEPLDQSHWLLECSSCPVLCFSME ESSEKNNIESSFGWPCENERKRLFCYLMYTSGSTGNPKGVCGTEQGLLNRFLWMQELY PMHGEELLLFKTSISFVDHLQEFLAASLTACTLVVPPLTELRQNVFSIIEFLEAYSIN RLTAVPSLMRVILPAMQSQHDNLISSSLRLLVLSGEVLPLALWNMLSSLLPKTSVLNL YGSTEVSGDCMYFDCKRLPSILEMQTLTTVPIGLPISKCSIVLNGENSNPNEGEIYVR GLCVSIGYFSENAIIPLNNAKLHQNSLCKCSMEACGSQVYFRTGDFAHQLPSGDLVFL GRKDRTVKVNGQRIALEEVENTLRGHNDVIDAAVISHKDQGEDALIVAFILLREKEES GEMFKTSIRNWMISKLPTAMVPTHFVFVKSLPMSASGKVDYTVLVESILSKSHVQDEI SNIGPSNLMQVIKKAFCEALMVEDVSDDDDFFMIGGNSIAAAHVSHNLGIDMRLLYTF STPAKLLITLVEKKGSKNTNFRIKDNAELIIQPDKGSAYSSVESETPDPLGSKLQRTL SWTLYERNDDQAVRSKRLKVDSNKYYILDPVHLFNGYPWNSASILKSCSFSRCNKVMR AGENEVNDTWQVAQSVEVPRTRTGYMQELWKVHMESCVDASPLIVFKDSDIYLFVGSH SHKFLCVNAQSGKPDYKDELKGLQQLLVTSLRWLLDATMGTYIFLNF" gene complement(34102884..34106977) /locus_tag="TCM_025684" /note="dbxref CacaoGD:Thecc1EG025684" mRNA complement(join(34102884..34103590,34103673..34103843, 34104005..34104411,34106075..34106977)) /locus_tag="TCM_025684" /product="Non-specific phospholipase C3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01026707001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025686t1" /inference="similar to AA sequence:ricco:30148.m001447" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc784t4" CDS complement(join(34103259..34103590,34103673..34103843, 34104005..34104411,34106075..34106706)) /locus_tag="TCM_025684" /note="dbxref ricco:30148.m001447; paralog of Thecc1EG025686t1" /codon_start=1 /product="Non-specific phospholipase C3" /protein_id="EOY10312.1" /db_xref="TAIR:AT3G03520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SRQ6" /translation="MVAEASSTTSSPIKTVVVLVQENRSFDHMLGWFKTLNPEIDGVT GSESNPISTSDPNSAQLTFQDTAGYVDPDPDHSFQAIYEQVSGKPWDTNNPDPNPEIK MNGFVQNAERTQAGLSETVMNGFKPEAVPVFKELVTEFAVCDRWFASLPASTQPNRLY VHSATSHGAMSNNTQQLIEGFPQKTIFESLEENGYSFGIYYQSFPSTAFYRTLRRLKY VDNFHQYDLSFKRHCEKGKLPNYVVIEPRYFDILTAAANDDHPSHDVSEGQKLVKEIY EALRSSPQWNEILFLVIYDEHGGFYDHVPTPTGVPSPDDVVGPEPYNFKFDRLGCRVP AIMVSPWIERGTVLHRPSGPDPTSEFEHSSIAATVKRIFNLKEFLTKRDAWAGSFDIV VNRSSPRTDCPEKLPEPVRMRDTDAKETAKLSDFQEELVQAAAALNGDHLKDIYPFKL VENMTVSSGLKYVEDAFKKFYDDGQKAKEINGAGDSLSADAQPTRTTTKTFMQKVFSC LVCDQ" mobile_element complement(34109204..34109699) /note="source:INTACT464_F222_scaffold_9-int 1 507" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(34110890..34111668) /note="source:CACAO_on_E33_A_scaffold_3 169 922" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(34113988..34114107) /note="source:CACAO_M_E5899_F5_scaffold_2 20748 20808" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(34114982..34115595) /note="source:CACAO_LINE_E_241_scaffold_9 333 942" /mobile_element_type="retrotransposon:LINE/L1" mobile_element 34116471..34116707 /note="source:scaffold_5_CACTA_0580 10139 10388" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(34118011..34118052) /note="source:INTACT296_F13_scaffold_9-int 13196 13277" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34118053..34118101 /note="source:CACAO_M_E14113_F106_scaffold_3 13798 13846" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 34118062..34118189 /note="source:CACAO_M_E5326_F22_scaffold_2 3437 3566" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(34118329..34122060) /locus_tag="TCM_025686" /note="dbxref CacaoGD:Thecc1EG025686" mRNA complement(join(34118329..34118933,34119013..34119183, 34119280..34119689,34121076..34122060)) /locus_tag="TCM_025686" /product="Non-specific phospholipase C4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s07120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025684t1" /inference="similar to AA sequence:ricco:30148.m001447" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2594t1" CDS complement(join(34118599..34118933,34119013..34119183, 34119280..34119689,34121076..34121710)) /locus_tag="TCM_025686" /note="dbxref ricco:30148.m001447; paralog of Thecc1EG025684t1" /codon_start=1 /product="Non-specific phospholipase C4" /protein_id="EOY10313.1" /db_xref="TAIR:AT3G03530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SRQ6" /translation="MVSESSSSSSYPIKTIVILIQENRSFDHMLGWFKSLNPDINGVT GSESNPISTSDSNSSRIFFKDNAEYVDPDPGHSIQAIYEQVYGKPWSSDHDPNPPHEP TMNGFAQNAERTEKGMAEAVMKGFRPEAIPVYKELALNFAICDRWFASVPASTQPNRM FVHSATSHGSTSNDTMKLIQGFPQKTIFESLEESGLSFGIYYQYPPSTLFFRNLRKLK YLKNFHQFDLHFKEHCEEGKLPNYVVVEQRYFDLLSVPANDDHPSHDVSEGQKFVKEV YEALRASPQWNEMLLVIAYDEHGGFYDHVPTPTIGVPSPDDIIGPEPYYFKFDRLGVR VPTFFISPWIEPGTVIHGPSGPYPTSEFEHSSIPATVKTIFNLKEFLTKRDAWAGTFE CVINRENPRTDCPVTLTEPVKMRDAAAKETAKLSEFQQELVQMAAVLSGDHKKKIYPH KLVENMTVAEAVKYVDGAFKKFCHECQKAKERGIDESEIVDLGELPQRLNSKSVVRKM FSCFIWDN" mobile_element 34121771..34121842 /note="source:CACAO_M_E24018_F98_scaffold_4 2048 2111" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(34128223..34130072) /locus_tag="TCM_025688" /note="dbxref CacaoGD:Thecc1EG025688" mRNA complement(34128223..34130072) /locus_tag="TCM_025688" /product="RING/U-box superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s07100.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015695t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s07100.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaL_g08902t00001" CDS complement(34128874..34129992) /locus_tag="TCM_025688" /note="paralog of Thecc1EG015695t1" /codon_start=1 /product="RING/U-box superfamily protein, putative" /protein_id="EOY10314.1" /db_xref="Phytozome:POPTR_0013s07100.1" /db_xref="TAIR:AT5G17600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I6S0" /translation="MSSSASTPNPWTPYDTYKDCSQGLCSIYCPQWCYLIFPPPPPFS INDDDDNSGTDFSPLIIAVIGILASVFILVSYYTIISKYCRRRRQDHTRLQLNESRDE LNHDGWQAASEGLDEGLIKSITVCKYKKGDGLIEGTDCSVCLSEFQEDESLRVLPKCN HAFHVPCIDTWLKSHSSCPLCRANIASTNSLPNQVAAVAVAAATIQEAPRNVSTLSAF EYQQRNDAISVIQDLEMGVREEAVITLVVSDDVGDMGNAKESSSMIGIGEDGNGIQPL RRSVSMSSSLCQGQVFSVADILRISEEDEDLQMEHHFQSSLGIGSSKQFDGEYCKSNC RNGVLNLVRSPLAMKRSISTGRFMFSRYEKDRNSILPN" gene complement(34130778..34148209) /locus_tag="TCM_025689" /note="dbxref CacaoGD:Thecc1EG025689" mRNA complement(join(34130778..34131582,34132423..34132468, 34133209..34133294,34134024..34134143,34136356..34136426, 34137645..34137693,34138166..34138257,34138349..34138391, 34138499..34138605,34138708..34138829,34139486..34139667, 34139807..34139920,34141125..34141166,34141404..34141514, 34145427..34145531,34145650..34145709,34145858..34145935, 34146024..34146099,34146215..34146280,34146383..34146462, 34147950..34148209)) /locus_tag="TCM_025689" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30148.m001445" /inference="similar to AA sequence:TAIR:AT3G03560.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8797t4" mRNA complement(join(34131349..34131582,34132423..34132468, 34133209..34133294,34134024..34134143,34136356..34136426, 34137645..34137693,34138166..34138257,34138349..34138391, 34138499..34138605,34138708..34138829,34139486..34139667, 34139807..34139920,34141125..34141166,34141404..34141514, 34145427..34145531,34145650..34145709,34145858..34145935, 34146024..34146099,34146215..34146462,34147950..34148091)) /locus_tag="TCM_025689" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s07090.1" /inference="alignment:exonerate- protein:2:ricco:30148.m001445" /inference="similar to AA sequence:TAIR:AT3G03560.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8797t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8797t4; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1142t2" CDS complement(join(34131550..34131582,34132423..34132468, 34133209..34133294,34134024..34134143,34136356..34136426, 34137645..34137693,34138166..34138257,34138349..34138391, 34138499..34138605,34138708..34138829,34139486..34139667, 34139807..34139920,34141125..34141166,34141404..34141514, 34145427..34145531,34145650..34145709,34145858..34145935, 34146024..34146099,34146215..34146280,34146383..34146405)) /locus_tag="TCM_025689" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY10315.1" /db_xref="TAIR:AT3G03560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4J152" /translation="MEHENKMSEHSVHGVNNNGVQAQSSDFLNRHGSETYLAPSKLKD RSFDFPDLEAKGLHLRASAQKEEIQHLREQIAVACVKELQLQNEKCALERKFSDLRMA IDEKQNEAITSASNELARRKGDLEENLKLAHDLKVAEDERYIFMSSMLGLLAEYGILP PVVNASAITSSVKHLHDQLQWKIRTSHDRIRELTGIVGTHTGGRSHENDRPISGILNN QIPHRATASHGFSSNNHYTDEQHLMPPDNMLRYMPDNDHTAKNLMFNDPGQQQLSNGN SQEFFFSSDRGGAGRNPDSAFDRGAVRTGAEDVTNNVFSHHDEMDSYGSEEGPGIEGF QIIGDATPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRQYIEGATNPEYVVTADDVDK LIAVECIPMDDQGHQGELVRLFANDQNKIKCDPDMQNEIDKYISRGQAAFSVLLLMDS SEKWEPATLTLKRSSYQIKINSTEAVEISEKYSKELSIKVPSGLSTQFVVTCFDGSSR PFSTYNVRMRDTLVLTMRLFQSKNLDDKRKGRA" CDS complement(join(34131550..34131582,34132423..34132468, 34133209..34133294,34134024..34134143,34136356..34136426, 34137645..34137693,34138166..34138257,34138349..34138391, 34138499..34138605,34138708..34138829,34139486..34139667, 34139807..34139920,34141125..34141166,34141404..34141514, 34145427..34145531,34145650..34145709,34145858..34145935, 34146024..34146099,34146215..34146348)) /locus_tag="TCM_025689" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY10316.1" /db_xref="TAIR:AT3G03560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4J152" /translation="MLALVQSEAVLKRTWTDNVMSSSEHSVHGVNNNGVQAQSSDFLN RHGSETYLAPSKLKDRSFDFPDLEAKGLHLRASAQKEEIQHLREQIAVACVKELQLQN EKCALERKFSDLRMAIDEKQNEAITSASNELARRKGDLEENLKLAHDLKVAEDERYIF MSSMLGLLAEYGILPPVVNASAITSSVKHLHDQLQWKIRTSHDRIRELTGIVGTHTGG RSHENDRPISGILNNQIPHRATASHGFSSNNHYTDEQHLMPPDNMLRYMPDNDHTAKN LMFNDPGQQQLSNGNSQEFFFSSDRGGAGRNPDSAFDRGAVRTGAEDVTNNVFSHHDE MDSYGSEEGPGIEGFQIIGDATPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRQYIEG ATNPEYVVTADDVDKLIAVECIPMDDQGHQGELVRLFANDQNKIKCDPDMQNEIDKYI SRGQAAFSVLLLMDSSEKWEPATLTLKRSSYQIKINSTEAVEISEKYSKELSIKVPSG LSTQFVVTCFDGSSRPFSTYNVRMRDTLVLTMRLFQSKNLDDKRKGRA" mRNA complement(join(34133233..34133294,34134024..34134143, 34135825..34135870,34136356..34136426,34137645..34137693, 34138166..34138257,34138349..34138391,34138499..34138605, 34138708..34138829,34139486..34139667,34139807..34139920, 34141125..34141166,34141404..34141514,34145427..34145531, 34145650..34145709,34145858..34145935,34146024..34146099, 34146215..34146462,34147950..34148176)) /locus_tag="TCM_025689" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:30148.m001445" /inference="similar to AA sequence:ricco:30148.m001445" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1137t5; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1142t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8797t4" CDS complement(join(34134130..34134143,34135825..34135870, 34136356..34136426,34137645..34137693,34138166..34138257, 34138349..34138391,34138499..34138605,34138708..34138829, 34139486..34139667,34139807..34139920,34141125..34141166, 34141404..34141514,34145427..34145531,34145650..34145709, 34145858..34145935,34146024..34146099,34146215..34146348)) /locus_tag="TCM_025689" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30148.m001445" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY10317.1" /db_xref="TAIR:AT3G03560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SDD6" /translation="MLALVQSEAVLKRTWTDNVMSSSEHSVHGVNNNGVQAQSSDFLN RHGSETYLAPSKLKDRSFDFPDLEAKGLHLRASAQKEEIQHLREQIAVACVKELQLQN EKCALERKFSDLRMAIDEKQNEAITSASNELARRKGDLEENLKLAHDLKVAEDERYIF MSSMLGLLAEYGILPPVVNASAITSSVKHLHDQLQWKIRTSHDRIRELTGIVGTHTGG RSHENDRPISGILNNQIPHRATASHGFSSNNHYTDEQHLMPPDNMLRYMPDNDHTAKN LMFNDPGQQQLSNGNSQEFFFSSDRGGAGRNPDSAFDRGAVRTGAEDVTNNVFSHHDE MDSYGSEEGPGIEGFQIIGDATPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRQYIEG ATNPEYVVTADDVDKLIAVECIPMDDQGHQGELVRLFANDQNKIKCDPDMQNEIDKYI SRGQAAFSVLLLLKSKGGLCTLLTNSSDGFF" mRNA complement(join(<34136356..34136426,34138166..34138257, 34138349..34138391,34138499..34138605,34138708..34138829, 34139486..34139667,34139807..34139920,34141125..34141166, 34141404..34141514,34145427..34145531,34145650..34145709, 34145858..34145935,34146024..34146099,34146215..34146462, 34147950..34148176)) /locus_tag="TCM_025689" /product="Uncharacterized protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:30148.m001445" /inference="similar to AA sequence:ricco:30148.m001445" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1137t3; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1142t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8797t4" CDS complement(join(<34136358..34136426,34138166..34138257, 34138349..34138391,34138499..34138605,34138708..34138829, 34139486..34139667,34139807..34139920,34141125..34141166, 34141404..34141514,34145427..34145531,34145650..34145709, 34145858..34145935,34146024..34146099,34146215..34146348)) /locus_tag="TCM_025689" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30148.m001445" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY10318.1" /db_xref="TAIR:AT3G03560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SDD6" /translation="MLALVQSEAVLKRTWTDNVMSSSEHSVHGVNNNGVQAQSSDFLN RHGSETYLAPSKLKDRSFDFPDLEAKGLHLRASAQKEEIQHLREQIAVACVKELQLQN EKCALERKFSDLRMAIDEKQNEAITSASNELARRKGDLEENLKLAHDLKVAEDERYIF MSSMLGLLAEYGILPPVVNASAITSSVKHLHDQLQWKIRTSHDRIRELTGIVGTHTGG RSHENDRPISGILNNQIPHRATASHGFSSNNHYTDEQHLMPPDNMLRYMPDNDHTAKN LMFNDPGQQQLSNGNSQEFFFSSDRGGAGRNPDSAFDRGAVRTGAEDVTNNVFSHHDE MDSYGSEEGPGIEGFQIIGDATPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRQYIEG ATNPEYVVTADDVDKLIAVECIPMDDQGHQTQTCKMRLTSTFPEAKQHLVFCY" mobile_element complement(34136673..34137145) /note="source:CACAO_on_SSS_E94_scaffold_6 2 467" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(34137062..34137155) /note="source:scaffold_2_CACTA_0245 1065 1156" /mobile_element_type="transposon:TIR/CACTA" mobile_element 34143077..34143271 /note="source:scaffold_1_CACTA_0016 9391 9582" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(34151032..34151175) /note="source:scaffold_4_CACTA_0505 5016 5158" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(34151595..34163691) /note="source:INTACT631_F9_scaffold_10-int 1 12118" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34163899..34164048 /note="source:scaffold_2_CACTA_0245 4956 5102" /mobile_element_type="transposon:TIR/CACTA" gene 34164367..34172440 /locus_tag="TCM_025691" /note="dbxref CacaoGD:Thecc1EG025691" mRNA join(34164367..34165049,34165642..34166029, 34166681..34166887,34167055..34167276,34167994..34168060, 34168150..34168374,34169118..34169209,34170890..34171072, 34171171..34171307,34171879..34172440) /locus_tag="TCM_025691" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s07040.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001044t1" /inference="similar to AA sequence:ricco:30148.m001444" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8828t1" mRNA join(34164587..34164762,34164842..34165049, 34165642..34166029,34166681..34166887,34167055..34167276, 34167994..34168060,34168150..34168374,34169118..34169209, 34170890..34171072,34171171..34171307,34171879..34172427) /locus_tag="TCM_025691" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s07040.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001044t1" /inference="similar to AA sequence:ricco:30148.m001444" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8828t1; alternateUTRof:Thecc1EG025691t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8828t1" CDS join(34164913..34165049,34165642..34166029, 34166681..34166887,34167055..34167276,34167994..34168060, 34168150..34168374,34169118..34169209,34170890..34171072, 34171171..34171307,34171879..34172104) /locus_tag="TCM_025691" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30148.m001444; paralog of Thecc1EG001044t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY10319.1" /db_xref="TAIR:AT3G03570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4J153" /translation="MAQQQINNNSGNSSNIPVSERYWTLVDKADKKFSKIRDLPYYER NRYDTYFYKVFKVYTQLWKFQQENRQKLVEAGLKRWEIGEIASRIAQLYYGQYMRTSE ASYLSEAYIFYEAILTREYFKEGLCQDTNLANKQLRFLARFLMVCLVLNRREMVHQLV NQLKMLVDECKRTFQDTDFKEWKLVVQEIVRFLKADTAFMNIRPLRYSLVLDPHPDVL PHVAAPVARKNLRLRDAILSSYHHNEVKFSELTLDTFRMLQCLEWEPSGSFYQSTGGK SGQNGALGPSRVNHSQDIADPTLPPNPRKAVLYRPSLTHFVAVLATICEELPPDGVLL IFLSASGRTGHALSPSGSGTGIKATENIIRDFQSHTIHSDGTSTSSFSSPSDSPNPSA SQSKGDCINYDTGCLQFGNRGIGGLNCIYPSDLIPFTRRPLFVIIESDASEVFKAISG AEKGERAALLLSPSCSFPIGAVDSSRQSIGSLFTIFLTAPLQAFCLLLGISGSDVEMD TYKHAESLLSSSLNDWGLTLATSDNLDPVWAQVLRDPFLRRFLLRFIFCRVVLALFAQ TFNKKEFHPECMPALPQSVSPMTTASQTVVMQLAKVFRATKQFIFTEGISLGDHGNID MES" CDS join(34164913..34165049,34165642..34166029, 34166681..34166887,34167055..34167276,34167994..34168060, 34168150..34168374,34169118..34169209,34170890..34171072, 34171171..34171307,34171879..34172104) /locus_tag="TCM_025691" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30148.m001444; paralog of Thecc1EG001044t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY10320.1" /db_xref="TAIR:AT3G03570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4J153" /translation="MAQQQINNNSGNSSNIPVSERYWTLVDKADKKFSKIRDLPYYER NRYDTYFYKVFKVYTQLWKFQQENRQKLVEAGLKRWEIGEIASRIAQLYYGQYMRTSE ASYLSEAYIFYEAILTREYFKEGLCQDTNLANKQLRFLARFLMVCLVLNRREMVHQLV NQLKMLVDECKRTFQDTDFKEWKLVVQEIVRFLKADTAFMNIRPLRYSLVLDPHPDVL PHVAAPVARKNLRLRDAILSSYHHNEVKFSELTLDTFRMLQCLEWEPSGSFYQSTGGK SGQNGALGPSRVNHSQDIADPTLPPNPRKAVLYRPSLTHFVAVLATICEELPPDGVLL IFLSASGRTGHALSPSGSGTGIKATENIIRDFQSHTIHSDGTSTSSFSSPSDSPNPSA SQSKGDCINYDTGCLQFGNRGIGGLNCIYPSDLIPFTRRPLFVIIESDASEVFKAISG AEKGERAALLLSPSCSFPIGAVDSSRQSIGSLFTIFLTAPLQAFCLLLGISGSDVEMD TYKHAESLLSSSLNDWGLTLATSDNLDPVWAQVLRDPFLRRFLLRFIFCRVVLALFAQ TFNKKEFHPECMPALPQSVSPMTTASQTVVMQLAKVFRATKQFIFTEGISLGDHGNID MES" gene 34173012..34174678 /locus_tag="TCM_025692" /note="dbxref CacaoGD:Thecc1EG025692" mRNA join(34173012..34173307,34173535..34173601, 34173987..34174212,34174326..34174678) /locus_tag="TCM_025692" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.95 coverage" CDS join(34173106..34173307,34173535..34173601, 34173987..34174212,34174326..34174457) /locus_tag="TCM_025692" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10321.1" /translation="MVLKRKKMDLKYMYLKGRKLDLKYMYLKRKKMDLKRKKRKNELD SRKKRKNELDSRIQLKRMDTVNNELYEGFQGGNPIEWWDYVIDEFKKMFWNWNWVNLM PDGPYKSILDYGDEDVGFEQDRCVDAIGYWYCCIHRYNDHVKSHRTVIELEEEMNKVF GICWRLELDLPNRVADIKGKTSEEIHKTINIDNDFTPEEEEEVRREKK" mobile_element complement(34175583..34176484) /note="source:scaffold_9_CACTA_0929 1231 2145" /mobile_element_type="transposon:TIR/CACTA" mobile_element 34176506..34177879 /note="source:INTACT166_F161_scaffold_4-int 43 1520" /mobile_element_type="retrotransposon:LTR/Copia" gene 34178455..34178973 /locus_tag="TCM_025694" /note="dbxref CacaoGD:Thecc1EG025694" mRNA join(34178455..34178530,34178675..34178973) /locus_tag="TCM_025694" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025695t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8760t1" CDS join(34178476..34178530,34178675..34178841) /locus_tag="TCM_025694" /note="paralog of Thecc1EG025695t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10322.1" /translation="MKNLGVSTIFILALLFTVGNEVKAQDQGKVCVVPFGLPNCKDAT CNSSCQRKFPPKGNGMCQGGATCLCFHPC" mobile_element 34179997..34180941 /note="source:CACAO_M_E69946_F329_scaffold_9 376 1334" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(34180936..34181478) /note="source:INTACT170F_F2_scaffold_3-int 1217 1760" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34181513..34181873 /note="source:CACAO_M_E69946_F329_scaffold_9 4998 5445" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(34181694..34181875) /note="source:INTACT782_F329_scaffold_10-int 5045 5263" /mobile_element_type="retrotransposon:LTR/Copia" gene 34182344..34184322 /locus_tag="TCM_025695" /note="dbxref CacaoGD:Thecc1EG025695" mRNA join(34182344..34182681,34182826..34183391, 34184265..34184322) /locus_tag="TCM_025695" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025694t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.36 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2328t5" CDS join(34182369..34182681,34182826..34182992) /locus_tag="TCM_025695" /note="paralog of Thecc1EG025694t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10323.1" /translation="MEKVHILEETNWKIRMSNKNVLASVKFGKNNELTGYYSFVYKVY ICWIKTASLLPTCVIYKCKRLWVSNTLQIIEEEQKGKGRITAMKNLGVSVIFILALLF TVGNEVKAQDQGKVCAVPFGLPNCKDATCNSSCQRKFPPNGNGMCQGGVTCLCFHPC" mobile_element complement(34183087..34183209) /note="source:scaffold_6_CACTA_0712 1393 1490" /mobile_element_type="transposon:TIR/CACTA" gene complement(34184323..34190128) /locus_tag="TCM_025696" /note="dbxref CacaoGD:Thecc1EG025696" mRNA complement(join(34184323..34184671,34186012..34188852, 34189009..34189087,34189888..34190128)) /locus_tag="TCM_025696" /product="Disease resistance protein RPM1, putative isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT3G07040.1" /inference="similar to AA sequence:ricco:29757.m000737" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.44 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc907t3; alternateUTRof:Thecc1EG025696t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc984t1" mRNA complement(join(34184323..34184680,34186012..34188852, 34189009..34189087,34189888..34190125)) /locus_tag="TCM_025696" /product="Disease resistance protein RPM1, putative isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT3G07040.1" /inference="similar to AA sequence:ricco:29757.m000737" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc984t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc984t1" CDS complement(34186046..34188850) /locus_tag="TCM_025696" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29757.m000737" /codon_start=1 /product="Disease resistance protein RPM1, putative isoform 1" /protein_id="EOY10324.1" /db_xref="TAIR:AT3G07040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SHP9" /translation="MALSATDLLLGRILSIMENEASLLSGVHDEINELKLELTSMRSF LEDADRTRVVQSKAENDWVVGVREIAHQVEDIIDKYMYDMNRQQQWRWGYTFTSFFLK GIQVPQNLWMKDRFAKKLQDINKEIKSIPERSQRYGVYQLEVKDKNLQGMLGNCDLNW LKNESESSLFLKDDDLVGIKKTQRELLGWLTNGDLERTVISVTGMGGLGKTTLVANTF NKQVVNQHFDFCAWTTVSQQYAIEELLRSMIKEIYMKANEQTPVNLNALSYRDLGEKL EKYLQAKRYLIVLDDVWSLNLWQQISRVLPNGRNGSRIMLTTRMKEVAFFQFGIVNHV LELKPLRDKEAWTLFCMKAFPSNLGQCPPYLDSLARNLAEKCKGLPLAIVALGGLLSS KKFLAEWRNVHDNLNWELSNNPELEAVKCILLLSYYHLPYRLKHCFLYCCIFPEDYLI RRNRLIRLWMAEGFVEPVTGATPEVVAERYLTELISRGLLQVTKRNESGRPQTCKMHD ILRELAVSISETEKFVAISDRKEAVVVGDNGIHRLSIEVRDKEMKAGKGISKLRSLFV FAVDEISKSSCNSLPSGFKLLRVLDLQDAPINQLPGEVVNLFNLRYLNLTGTQVKELP KSIGKLCNLQSLFLKETQIEELPPGIVKLKNLRHLIVYRFNIRGTDYDRWVGMRLPSN IFLVKSLQVLTFAEAGDTFIKNLSKMTQLKRLCFANVKEANEKDLCFSIGKISLLRYL MVMSCNKEERLKMDQLVEAPPCLEKLVLAGKLEKLPHWFKSLQNLTCLRLHWSRLREE GFLTHIQALPNLGRITLVNAFEGERLCFLQGFQKLKVLRIQKFPGLKDIVINKGVMPG LQELNIRECPKFVKLPHAWGSDLPDLRKVCLRDVSSEIIEQICGAQSMAQPAIRVILL SRVEDNDDESNFKWVYRTYD" CDS complement(34186046..34188850) /locus_tag="TCM_025696" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29757.m000737" /codon_start=1 /product="Disease resistance protein RPM1, putative isoform 1" /protein_id="EOY10325.1" /db_xref="TAIR:AT3G07040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SHP9" /translation="MALSATDLLLGRILSIMENEASLLSGVHDEINELKLELTSMRSF LEDADRTRVVQSKAENDWVVGVREIAHQVEDIIDKYMYDMNRQQQWRWGYTFTSFFLK GIQVPQNLWMKDRFAKKLQDINKEIKSIPERSQRYGVYQLEVKDKNLQGMLGNCDLNW LKNESESSLFLKDDDLVGIKKTQRELLGWLTNGDLERTVISVTGMGGLGKTTLVANTF NKQVVNQHFDFCAWTTVSQQYAIEELLRSMIKEIYMKANEQTPVNLNALSYRDLGEKL EKYLQAKRYLIVLDDVWSLNLWQQISRVLPNGRNGSRIMLTTRMKEVAFFQFGIVNHV LELKPLRDKEAWTLFCMKAFPSNLGQCPPYLDSLARNLAEKCKGLPLAIVALGGLLSS KKFLAEWRNVHDNLNWELSNNPELEAVKCILLLSYYHLPYRLKHCFLYCCIFPEDYLI RRNRLIRLWMAEGFVEPVTGATPEVVAERYLTELISRGLLQVTKRNESGRPQTCKMHD ILRELAVSISETEKFVAISDRKEAVVVGDNGIHRLSIEVRDKEMKAGKGISKLRSLFV FAVDEISKSSCNSLPSGFKLLRVLDLQDAPINQLPGEVVNLFNLRYLNLTGTQVKELP KSIGKLCNLQSLFLKETQIEELPPGIVKLKNLRHLIVYRFNIRGTDYDRWVGMRLPSN IFLVKSLQVLTFAEAGDTFIKNLSKMTQLKRLCFANVKEANEKDLCFSIGKISLLRYL MVMSCNKEERLKMDQLVEAPPCLEKLVLAGKLEKLPHWFKSLQNLTCLRLHWSRLREE GFLTHIQALPNLGRITLVNAFEGERLCFLQGFQKLKVLRIQKFPGLKDIVINKGVMPG LQELNIRECPKFVKLPHAWGSDLPDLRKVCLRDVSSEIIEQICGAQSMAQPAIRVILL SRVEDNDDESNFKWVYRTYD" mobile_element complement(34192017..34192419) /note="source:CACAO_Mutator_E39_scaffold_1 3175 3551" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(34194228..34195218) /note="source:CACAO_on_E193_scaffold_6 9352 10322" /mobile_element_type="transposon:TIR/Mutator" mobile_element 34194413..34196946 /note="source:CACAO_on_S_E176_scaffold_5 1680 4180" /mobile_element_type="transposon:TIR/Mutator" mobile_element 34195449..34197044 /note="source:scaffold_1_CACTA_0009 7636 9282" /mobile_element_type="transposon:TIR/CACTA" mobile_element 34197260..34197336 /note="source:CACAO_Mutator_E161_scaffold_1 5154 5231" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(34197332..34197496) /note="source:scaffold_5_CACTA_0615 807 962" /mobile_element_type="transposon:TIR/CACTA" mobile_element 34197462..34197630 /note="source:scaffold_5_CACTA_0607 6131 6247" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(34197657..34201057) /note="source:CACAO_on_E193_scaffold_6 25 3450" /mobile_element_type="transposon:TIR/Mutator" mobile_element 34200928..34201639 /note="source:CACAO_Mutator_E39_scaffold_1 3570 4090" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(34203637..34203837) /note="source:CACAO_on_E63_scaffold_8 974 1175" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(34203828..34204251) /note="source:CACAO_hAT_E1792_scaffold_4 67 506" /mobile_element_type="transposon:TIR/hAT" gene 34205412..34205871 /locus_tag="TCM_025700" /note="dbxref CacaoGD:Thecc1EG025700" mRNA join(34205412..34205517,34205677..34205871) /locus_tag="TCM_025700" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025695t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g15876t00001" CDS join(34205463..34205517,34205677..34205843) /locus_tag="TCM_025700" /note="paralog of Thecc1EG025695t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10326.1" /translation="MMNQHVSAIFILALLFTVGIEVMAQDQGKVCAVPFGLPNCKDAT CKSSCQRKFPPKGNGMCQGGATCLCFHPC" mobile_element 34206120..34206598 /note="source:INTACT687_F13_scaffold_3-int 1294 2052" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34206599..34206797 /note="source:CACAO_M_S_E5285_F300_scaffold_1 17785 17965" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(34206793..34208261) /note="source:scaffold_5_CACTA_0615 590 2146" /mobile_element_type="transposon:TIR/CACTA" gene 34208341..34209177 /locus_tag="TCM_025701" /note="dbxref CacaoGD:Thecc1EG025701" mRNA 34208341..34209177 /locus_tag="TCM_025701" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.13 coverage" CDS 34208702..34208959 /locus_tag="TCM_025701" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10327.1" /translation="MRQATAWSLRDNQKQGDPKRGTADSVDRVRFVGGENVGDEGAMI QGKEPDGEEDNDGQEKKTDRTQQLSNGFRYGFTLVTQQERS" mobile_element 34209105..34209142 /note="source:INTACT409F_F47_scaffold_4-int 19328 19365" /mobile_element_type="retrotransposon:LTR/Copia" gene 34210042..34214848 /locus_tag="TCM_025702" /note="dbxref CacaoGD:Thecc1EG025702" mRNA join(34210042..34210154,34210283..34210332, 34210755..34210860,34210955..34211013,34214633..34214848) /locus_tag="TCM_025702" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s07030.1" /inference="similar to AA sequence:Phytozome:Glyma03g23950.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g07458t00001" CDS join(34210044..34210154,34210283..34210332, 34210755..34210860,34210955..34211013,34214633..34214684) /locus_tag="TCM_025702" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10328.1" /db_xref="Phytozome:Glyma03g23950.1" /db_xref="TAIR:AT5G17610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q67Y04" /translation="MPNKSNLPVLNILLLLILLASSNFLPTVLAKSRNPITDSETKKK KSECYADIESGLWGEQCKSSSIAKENCALKCLSPACYELIYESDPLEEGEKDFIRSQE FKYCMYKLSLGESLEGVKGTFDY" gene 34215545..34221085 /locus_tag="TCM_025703" /note="dbxref CacaoGD:Thecc1EG025703" mRNA join(34215545..34217220,34218886..34219009, 34219401..34219694,34219787..34219989,34220264..34221085) /locus_tag="TCM_025703" /product="Mechanosensitive channel of small conductance-like 10 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30148.m001443" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016671t1" /inference="similar to AA sequence:ricco:30148.m001443" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1479t2" mRNA join(34215942..34217220,34218886..34219012, 34219784..34219989,34220264..34220759) /locus_tag="TCM_025703" /product="Mechanosensitive channel of small conductance-like 10 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30148.m001443" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016671t1" /inference="similar to AA sequence:ricco:30148.m001443" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1488t4; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1479t2" CDS join(34215980..34217220,34218886..34219012, 34219784..34219989,34220264..34220528) /locus_tag="TCM_025703" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30148.m001443; paralog of Thecc1EG016671t1" /codon_start=1 /product="Mechanosensitive channel of small conductance-like 10 isoform 2" /protein_id="EOY10330.1" /db_xref="TAIR:AT5G12080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I6R2" /translation="MEAQSQDKQKPNSDQLVLFMNEPNLKHKESPPQVVDNNLTDPVS QSPAKAKTLRRLNFSKPKARFAENTYPLTPKTIHESEENKPSYPHDDTSSTDSDDEWF ENEGEDDEDGNGDAKQAKFRARRRKRKINKRALIEFFLFVTIMTCLICSLTLQSLKHQ LTWGLELWKWCLMIMVLFCGRLVSAWVVGFLVFLIERNFMLREKVLYFVYGLRKSFQN CAWLGLVLICWMIMFPDIHKQNIVVKKAFLGLIAVLIGATIWLLKIVLVKVLASSFHV ATFFDRMQECVFHHYILDALSGPPLDEAERELPQKRGLRHAKTMPARLREGGGGTVRT LSKKGSRRIDMEKLRKLSLESRASAWSVKRLVNYVKSSGLSTISRTVDDFGAGESEIN SEWEARTCAQKIFKNVAKPGAKYIDEEDLLRFLISEEVHTIVPLFEGALETGKISKSS FRNWVVQMIVEEMNILTTVFLRYDMEKIYYPNSVLITKPISNFRRSPDMGDSVDFTID FSTPAEDINALKKAIQLYIESKPKYWSPKHTVIFKAIENMDKMKLVLCVQHTMNHQNY GEKSARRSELVFELKKIFETLNIKYHLLPQEVHLTQVNIPNGRMVL" CDS join(34215980..34217220,34218886..34219009, 34219401..34219694,34219787..34219989,34220264..34220528) /locus_tag="TCM_025703" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30148.m001443; paralog of Thecc1EG016671t1" /codon_start=1 /product="Mechanosensitive channel of small conductance-like 10 isoform 1" /protein_id="EOY10329.1" /db_xref="TAIR:AT5G12080.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RK20" /translation="MEAQSQDKQKPNSDQLVLFMNEPNLKHKESPPQVVDNNLTDPVS QSPAKAKTLRRLNFSKPKARFAENTYPLTPKTIHESEENKPSYPHDDTSSTDSDDEWF ENEGEDDEDGNGDAKQAKFRARRRKRKINKRALIEFFLFVTIMTCLICSLTLQSLKHQ LTWGLELWKWCLMIMVLFCGRLVSAWVVGFLVFLIERNFMLREKVLYFVYGLRKSFQN CAWLGLVLICWMIMFPDIHKQNIVVKKAFLGLIAVLIGATIWLLKIVLVKVLASSFHV ATFFDRMQECVFHHYILDALSGPPLDEAERELPQKRGLRHAKTMPARLREGGGGTVRT LSKKGSRRIDMEKLRKLSLESRASAWSVKRLVNYVKSSGLSTISRTVDDFGAGESEIN SEWEARTCAQKIFKNVAKPGAKYIDEEDLLRFLISEEVHTIVPLFEGALETGKISKSS FRNWVVHAYVERKALAHSLNDTKTAVQQLHRLASAIVSVIIIVVSLLVMGVATIKVVF VVTSQLLLVGFMFQNTCKTIFESIIFVFVMHPFDVGDRCVIDDVQMIVEEMNILTTVF LRYDMEKIYYPNSVLITKPISNFRRSPDMGDSVDFTIDFSTPAEDINALKKAIQLYIE SKPKYWSPKHTVIFKAIENMDKMKLVLCVQHTMNHQNYGEKSARRSELVFELKKIFET LNIKYHLLPQEVHLTQVNIPNGRMVL" gene complement(34221115..34224090) /locus_tag="TCM_025704" /note="dbxref CacaoGD:Thecc1EG025704" mRNA complement(join(34221115..34222098,34222176..34222309, 34222991..34223078,34223993..34224090)) /locus_tag="TCM_025704" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1015t6_C1" CDS complement(join(34222095..34222098,34222176..34222309, 34222991..34223078,34223993..34224024)) /locus_tag="TCM_025704" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10331.1" /translation="MDPAKELGHVRMWIKDVARGKSESASHWLKFFSKLQLSFNVGNI RILSGCLYIFSLCGLNVHGTEHYLGFQSGGDHLIESLYLIR" gene 34223871..34228138 /locus_tag="TCM_025705" /note="dbxref CacaoGD:Thecc1EG025705" mRNA join(34223871..34226620,34228068..34228138) /locus_tag="TCM_025705" /product="LRR receptor-like serine/threonine-protein kinase, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s28080.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025707t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s28080.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8998t2" CDS 34224417..34226405 /locus_tag="TCM_025705" /note="paralog of Thecc1EG025707t1" /codon_start=1 /product="LRR receptor-like serine/threonine-protein kinase, putative" /protein_id="EOY10332.1" /db_xref="Phytozome:POPTR_0005s28080.1" /db_xref="TAIR:AT2G33580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I6Y0" /translation="MGRLKPWPKFYLPFMLLPFLLLIGFAQAQQSYVDNQQLACEDPT KDNNITRGYLCNGEQRSCQSYITFRSEPPFYNTAVSIAYLLGAEAMQISSLNKLSADV SPITAKSMVVVPVNCSCFSGGNGSYYQHNASYTIKFDGETYFSISNDTYQGLTTCQAM EAQNPINFRELKVGNELTVPLRCACPTVRQTQGGVKYLLSYLVTWGDSISAIAETFGV DEKSLLDANELTEQDLIFPFTPLLVPLSKEPTKIELPQASPPSVPSPQIPTDPVEESK SSKKWVFIGVGIGAGFLLLLGLAGFLFCFCRRQARPIASPPPKPPSQVKPSSDSANYT GNSWSSISSQGVRYAIESLTLYRFEDLGAAAGNFSESNRIKGSVYQGSFQGDAAAVKV IKGDVSSEINLLKKINHTNIIRLSGFCVHEGNTYLVYEFADKGSVSDWLHSNKFQTSF TLSWKQRVQIAYDIADALNYLHNYINPPYVHKNLKTSNILLDVNFRAKIANFGLARTF EDNDEGGLQLTRHVVGTQGYMAPEYIENGVITPKLDVFALGVIILELLSGRQAANAEK NSGGEELLAASIEGVLEGDNVREKLKNFIDPSLRPEYPLDLAFSMAQLAKNCVAHDLN ARPSMSEVLVTLSKILSSSLDWDPSDEFQRSTSLGSAR" mobile_element complement(34226629..34228590) /note="source:INTACT5_F105_scaffold_4-int 1 1983" /mobile_element_type="retrotransposon:LTR/Unclassified" gene 34229254..34232245 /locus_tag="TCM_025706" /note="dbxref CacaoGD:Thecc1EG025706" mRNA join(34229254..34229330,34229420..34229473, 34231773..34231842,34231939..34232245) /locus_tag="TCM_025706" /product="Prefoldin chaperone subunit family protein" /inference="similar to AA sequence:ricco:30148.m001442" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g12214t00001" CDS join(34229274..34229330,34229420..34229473, 34231773..34231842,34231939..34231988) /locus_tag="TCM_025706" /note="dbxref ricco:30148.m001442" /codon_start=1 /product="Prefoldin chaperone subunit family protein" /protein_id="EOY10333.1" /translation="MATASSSTSTDPKLDLTKQIRTHEVAIAELSSLYSSQTVYQKNG NLFFRTTIQKATSSEQKQLDSAKAKLEKLNSQ" mobile_element complement(34231313..34231383) /note="source:scaffold_4_CACTA_0482 8174 8240" /mobile_element_type="transposon:TIR/CACTA" gene 34233278..34235575 /locus_tag="TCM_025707" /note="dbxref CacaoGD:Thecc1EG025707" mRNA 34233278..34235575 /locus_tag="TCM_025707" /product="LRR receptor-like serine/threonine-protein kinase, putative" /inference="alignment:exonerate- protein:2:TAIR:AT2G33580.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025705t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s28080.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8803t1" CDS 34233325..34235295 /locus_tag="TCM_025707" /note="paralog of Thecc1EG025705t1" /codon_start=1 /product="LRR receptor-like serine/threonine-protein kinase, putative" /protein_id="EOY10334.1" /db_xref="Phytozome:POPTR_0005s28080.1" /db_xref="TAIR:AT2G33580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H5Z0" /translation="MEKKLKPWPTFHVLALLLLLFLSLHCGSTQGQQAYLNNDQLECG DKSKDNNITRGFLCNGVKQSCQSYLTFRAEPPYNSAVTIAYLLGAQPDLISSLRINNL SSDVSAIPANSLVFFPLNCSCAGSYYQHNVTYTIKEDTETYFTMANDTYQGLTTCQAM KAQNSIGIMDLKVGDKLQVPLRCACPTLDQTYAGAKYLLTYIAGWEDSISSIAETFGV DDQSVLDANKLIEDMIYPFTPVLVPLAREPTMIVPPQASPSPPPPSQITITPTRKSKS SHKWVFVGIGIAAGLLFLFSLSGLLFCFYKHPSLKAEPEASAPPEPKPLSDSIDYSDK SWFVSIHGGTYEVESLTPYTFKDLEAATGNFSESNIIKGSIYRGQFQGDDAAVKVIKG DVSVEMNLLKKINHNNIVRLSGFCVHAGNTYLVYEHVEKGSLDDWLQTSKYQTSFSLS WKQRVQIAYNVADALNYLHNYINPPCIHRNLKTSSILLDGNFRAKVANFGLARSVENE GDLQLTTHVVGTQGYMAPEHFENGVITPKLDVFAFGVVLLELLSGRKAAEKNAGGEEL LSASIKGVLEGVNVAEKLQNFIDPTLRHEYPLDLAFSMAQLARNCVAYDLNARPSMAE VLITVTKICSSSLHWCPSDEFQSLSSAKLATY" gene complement(34235915..34238409) /locus_tag="TCM_025708" /note="dbxref CacaoGD:Thecc1EG025708" mRNA complement(join(34235915..34236380,34237437..34237509, 34237623..34237749,34238379..34238409)) /locus_tag="TCM_025708" /product="Calcium-binding EF hand family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s06970.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s06970.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc629t3_C1" CDS complement(join(34236114..34236380,34237437..34237509, 34237623..34237749,34238379..34238406)) /locus_tag="TCM_025708" /codon_start=1 /product="Calcium-binding EF hand family protein" /protein_id="EOY10335.1" /db_xref="Phytozome:POPTR_0013s06970.1" /db_xref="TAIR:AT1G64850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XIR0" /translation="MGQVLDKFHGKEWRKKQIRKISDKVFERIKNQSGRATLTFEDLY ISILLVYNDINKRLPGPHFDPPSKEQVRSMMQEYDFNLDGEIDQEEFVKFIQQLTTDT FIVVSQGLIVTLVVAPTVAMATKKATEGVPGVGKVVQKLPNSIYASLVTLAIVWFQTS REGI" mobile_element 34238913..34239041 /note="source:scaffold_7_CACTA_0795 2858 2978" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(34240438..34240538) /note="source:CACAO_Mutator_E592_scaffold_3 3627 3728" /mobile_element_type="transposon:TIR/Mutator" mobile_element 34241565..34241754 /note="source:scaffold_4_CACTA_0482 6072 6305" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(34242924..34243054) /note="source:scaffold_5_CACTA_0612 4982 5112" /mobile_element_type="transposon:TIR/CACTA" gene 34243271..34246700 /locus_tag="TCM_025709" /note="dbxref CacaoGD:Thecc1EG025709" mRNA join(34243271..34244599,34246527..34246700) /locus_tag="TCM_025709" /product="KAR-UP F-box 1, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s06080.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016740t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s06080.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8810t2" CDS 34243435..34244583 /locus_tag="TCM_025709" /note="paralog of Thecc1EG016740t1" /codon_start=1 /product="KAR-UP F-box 1, putative" /protein_id="EOY10336.1" /db_xref="Phytozome:POPTR_0019s06080.1" /db_xref="TAIR:AT1G31350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPY9" /translation="METIQCSKRPKNGSFDDSDNETLLPGLPDDLAQLCLSSLFPSLL FSVCHSWRRLLYSPSFPPFFSLYALLSPLQNPTTISHEEVAHRNSIEFFSFDPLSAAW RPLPSPPQNPPLHLLHRHPSFLSRKLPIQSLTVSNHLVLIAATTHNFSPALSSPLLFH PESNRWFYGPQISTPRRWCATGAVRGVAYMASGVVGSYYRGDVARSMEQWDLNQKSES WGWENKAQLKDGRFSREAVDAVGYRGKLCMVNVKGNAVKEGAVYNVELDKWEEMPCGM VAGWNGPAATMDEDVIYVIDEVKGSLSKYDDEKDCWVALIELEQLKRAEQIAAGRGKI CAVSANGEKIIVVDVGEERAAARFWEVAPPPGFEVVAAHVLPRITRQQ" mobile_element 34246195..34246531 /note="source:scaffold_10_CACTA_0130 6253 6594" /mobile_element_type="transposon:TIR/CACTA" mobile_element 34246538..34247722 /note="source:scaffold_10_CACTA_0130 7867 9605" /mobile_element_type="transposon:TIR/CACTA" gene 34249438..34250966 /locus_tag="TCM_025710" /note="dbxref CacaoGD:Thecc1EG025710" mRNA join(34249438..34249607,34249777..34250103, 34250180..34250966) /locus_tag="TCM_025710" /product="Glutathione S-transferase TAU 8" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0016s02350.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012561t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s06950.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03061t00001" CDS join(34249527..34249607,34249777..34250103, 34250180..34250530) /locus_tag="TCM_025710" /note="paralog of Thecc1EG012561t1" /codon_start=1 /product="Glutathione S-transferase TAU 8" /protein_id="EOY10337.1" /db_xref="Phytozome:POPTR_0013s06950.1" /db_xref="TAIR:AT2G29420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I6G5" /translation="MFSIFAFWNYMDKDVIKIKDPSLPHKVVEIANSMAEVKLFKTWS TQFGARVVWALKLKGIQYEAIDEDLSNKSALLLQYNPVYKKVPVLVHNGKPISESLVI LEYIEETWKQNPILPEDPLGKANARFWAKFNDEKLLPSIWSAFTKEGKEREEAMGAVL ESLKFVEEELKGKKFFGGEKIGLADLVFGWLANLAPVFEEVAGLKILDERYPLLLAWQ PEFSEHPIIKDYWPPHDKLVIKYQALYEKYHPAK" gene complement(34251083..34254523) /locus_tag="TCM_025711" /note="dbxref CacaoGD:Thecc1EG025711" mRNA complement(34251083..34254523) /locus_tag="TCM_025711" /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400003194" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004262t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400003194" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.39 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc3615t1" CDS complement(34251279..34253948) /locus_tag="TCM_025711" /note="paralog of Thecc1EG004262t1" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative" /protein_id="EOY10338.1" /db_xref="Phytozome:PGSC0003DMP400003194" /db_xref="TAIR:AT3G03580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SS60" /translation="MKTFNTLHEARHQILYSSITKALSSVSNSKQLHKIHSIIITLGL ENSVLFSGKLISKYAQFKDPTSSLSVFHRVSSTSNVYQWNSVIRALTHNGLFSKALGF YTQMRKMDVLPDKYTFPSVANSCAALVDIEMGKVVHENVLDMGLGSDLYIGNALVDMY ARFGCLAEALKVFNGMPERDVVSWNSLISGYSANGYWEEALEVYNMARMAGIMPDCYT VSSVLPACGGLVDVKEGEVVHCLVEKIGLHRDVVVSNGLLSMYFKFNRLVDARRIFDE MVVRDTVSWNTLICGYSQMELFKESILLFMQMVNKFEPDLLTITSVLCACGHLRDLEF GKFVHEYMKRSRYESDTTADNILIDMYSKCGDLLASREVFDRMICRDSVSWNSIINGY FQYGKYDEAVKLFRIMKIDSKVDSITCVMLLSASTQLADKDLGKKIHCDVTKLGFDSD IIINNAMIDMYAKCGQINDSMKIFEYMKTHDRVSWNTIITACVQSGDFTLGLKLIHQM RTEGLRADVATILGILPMCFFLAAKRQGQEIHGCIFRLGFETDVPVGNALIEMYSKCC SLTISLEVFDSMKVRDVVTWTTMISAYGMYGEGKKALRAFAEMEATGVIPDHVAFVAI IYACSHSGLVEEGLASFDRMKKVYNLEPRIEHYACVVDLLSRSGLISKAEEFIYSMPM KPDASIWGSLLSACRSCGNIEVAQRVSERILELNSNDTGYYVLASNVYAILGKWDQVR MIRKSIKARGLKKDPGCSWIEIKRRLYVFGTGDKFFEQFDEVTKLLGIISGLMAKEGY VADLRYVLHDIEEDEKRDLLCGHSERLAIAFGLLNTKPGTPLHIMKNLRVCGDCHTVT KYISMIMQREILVRDANRFHIFKNGICSCGDHW" gene 34256962..34268320 /locus_tag="TCM_025712" /note="dbxref CacaoGD:Thecc1EG025712" mRNA join(34256962..34257290,34257611..34257872, 34258203..34258744,34262363..34262449,34262533..34262589, 34263576..34263814,34263903..34264021,34264101..34264187, 34264271..34264549,34268231..34268320) /locus_tag="TCM_025712" /product="MATE efflux family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s13550.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046804t1" /inference="similar to AA sequence:Phytozome:GSVIVT01029934001" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1708t4" CDS join(34257618..34257872,34258203..34258744, 34262363..34262449,34262533..34262589,34263576..34263814, 34263903..34264021,34264101..34264187,34264271..34264351) /locus_tag="TCM_025712" /note="paralog of Thecc1EG046804t1" /codon_start=1 /product="MATE efflux family protein" /protein_id="EOY10339.1" /db_xref="Phytozome:GSVIVT01029934001" /db_xref="TAIR:AT3G03620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HMW6" /translation="MDDSMEERFLAQKEEDTTDHDDLKRRLWIESKTIWRIAFPSILS RVTSFGMIIVTQSFIGHISEVELATYALVQSILIRFMYGIVIGMSSATETLCGQAFGA GHHHMMGIYLQRSWIVDGITATILAPLFIFATPILRLLGQEEELAVAAGPIALWFIPM IYSFVMSLTISMFLQAQLKNLIVGWVSTAAFVFHVLLSWMFVNKFNWGVNGAMAAMII SGWTSVVGQVVYVFGGWCPNTWKGFSKAAFCDLLPVVKLSISSGVMICLELWYYSILV LVAGYMKNATIAIDAFSICLNINGWEFMVCLGFLVAASVRVSNELGKGNAKAVKFAIK TILGTSTCIGVVLWILCLVFRNQISYLFSSNEEVAEAVSSLSILFAFSILLNSVQPVL SGIATGAGLQSMVAYVNLGSYYVIGIPIGILLGYVAHLQVKGLWIGLLSGVAMQSLIL SWIVWKTDWDEQVRKASERLNRWLLKPPEEDNGSPTHA" mobile_element complement(34262673..34263546) /note="source:CACAO_on_E9_scaffold_2 1 888" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(34264892..34265248) /note="source:scaffold_9_CACTA_0943 3726 4125" /mobile_element_type="transposon:TIR/CACTA" gene complement(34265359..34267626) /locus_tag="TCM_025713" /note="dbxref CacaoGD:Thecc1EG025713" mRNA complement(join(34265359..34266759,34267041..34267205, 34267621..34267626)) /locus_tag="TCM_025713" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.40 coverage" CDS complement(join(34266338..34266759,34267041..34267137)) /locus_tag="TCM_025713" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10340.1" /translation="MHRMRPAYKMRAQALHRPNKWIKDRGPSMSQADPQIASESPCPE THSLSGGGVEQLELQGTVENDELKHTHSELCLAALLEETVVAKAERGFKKSRKKDIKG LLRRATSSNSDYYAAAAIVSDGDIMHHNEILKEAESVWEIGLHLGLSRNCPEEQFVNK IQKIVRQRNRRM" mobile_element 34268239..34270954 /note="source:scaffold_4_CACTA_0489 5887 8658" /mobile_element_type="transposon:TIR/CACTA" gene complement(34273894..34274779) /locus_tag="TCM_025715" /note="dbxref CacaoGD:Thecc1EG025715" mRNA complement(join(34273894..34274219,34274394..34274779)) /locus_tag="TCM_025715" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400044924.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025717t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g02418t00002_C2" CDS complement(join(34274026..34274219,34274394..34274682)) /locus_tag="TCM_025715" /note="paralog of Thecc1EG025717t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10341.1" /translation="MASTACFLHHQAFIHAPLIPRSSSPQRHRPNIKPCKLVCSAQNQ PLNKDHQAVQGGVSRRSVVDALIVGSAAIGSALAFVGAGYADGFSSGPFKPPGKQSWP ELVGEKGDVAAAKIEKENPNVKAVVLLEGTPTDRMFDITRVRVFVNEEGMVTQVPRTG " gene 34276645..34276974 /locus_tag="TCM_025716" /note="dbxref CacaoGD:Thecc1EG025716" mRNA 34276645..34276974 /locus_tag="TCM_025716" /product="Uncharacterized protein" /note="quality class is strong-expresste, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00903c00001" CDS 34276760..34276912 /locus_tag="TCM_025716" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10342.1" /translation="MNKTLVKMARCLLIGKGLPTRFWAEALNTAVNLLNYLPTKALES KSAFKA" gene complement(34279871..34281266) /locus_tag="TCM_025717" /note="dbxref CacaoGD:Thecc1EG025717" mRNA complement(join(34279871..34279893,34280427..34280706, 34280881..34281266)) /locus_tag="TCM_025717" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025715t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14628t2" CDS complement(join(34280513..34280706,34280881..34281169)) /locus_tag="TCM_025717" /note="paralog of Thecc1EG025715t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10343.1" /translation="MASTACFFHHQAFVHAPLIPRSSSPQRHRLNIKPSKLVCRAPNQ PLNKDHQAVQGGVSRRSVVDALIFGSAAIGSALTFVGAGYAAGFSFGPFKPPGKESWP ELVGEKGEVAAAKIEKENPNVKAVLLFEGDIADMRFDFGRVRVVVDADGIVTQVPRIG " gene complement(34282206..34284485) /locus_tag="TCM_025718" /note="dbxref CacaoGD:Thecc1EG025718" mRNA complement(join(34282206..34282764,34283356..34284017, 34284327..34284485)) /locus_tag="TCM_025718" /product="Eukaryotic aspartyl protease family protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT2G28220.1" /inference="similar to AA sequence:ricco:30148.m001433" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS complement(join(34282473..34282764,34283356..34284002)) /locus_tag="TCM_025718" /note="dbxref ricco:30148.m001433" /codon_start=1 /product="Eukaryotic aspartyl protease family protein, putative" /protein_id="EOY10344.1" /db_xref="TAIR:AT1G64830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XIR2" /translation="MEQLKHVHLNVNVFGVTTLLPQKEIFLPLFLAHSQHDCTPTFFP SVWALLKPTCNVFPTIILLYLLQAWQLKFITQIFCIALATIISCYFFSHRPSLEAQND GIGVELIPRDSPKSPFYNQLETTSQRTINALQRSLTHVNHFTPSCISKNEAQSHIIAN QGEYLMNISMGTPPFEILAITDTGSDLTWTQCEPCPECYKQDAPLFNPKSSSTYKSEI DAKRVDAPAETLSLWYEAQNDFKVPNITVHSTNADVKLSPLNTFVLVSEGVSCFSFTT ISDFSIYGNLAQMNFLVGYDIENQAVSFKPTACTKE" gene complement(34284533..34286705) /locus_tag="TCM_025719" /note="dbxref CacaoGD:Thecc1EG025719" mRNA complement(34284533..34286705) /locus_tag="TCM_025719" /product="Eukaryotic aspartyl protease family protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT2G28220.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016734t1" /inference="similar to AA sequence:ricco:30148.m001433" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc954t1" CDS complement(34285179..34286486) /locus_tag="TCM_025719" /note="dbxref ricco:30148.m001433; paralog of Thecc1EG016734t1" /codon_start=1 /product="Eukaryotic aspartyl protease family protein, putative" /protein_id="EOY10345.1" /db_xref="TAIR:AT1G64830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XIR2" /translation="MAATANTTSMFFIGFAILVLSCFCLIEAQKGGFSVELIHRDSPK SPLYNPLETASNRVANALRRSFNRAQRFKPSSISTKAVDADLIADSGEYLMNVSIGTP AFDIVAIADTGSDLIWTQCKPCSQCFRQDAPLFDPSKSSTFRTFSCSASQCENLEGSS CSSNNTCRYSVTYGDNSFSNGDVAADTLTLPSTTGRPVAFRNTIIGCGHNNDGTFDEN TSGIIGLGGGDVSLISQLGTSIAGKFSYCLLPLSDAGESNKMNFGTDAIVSGAGVVST PLTKKFPSTFYFLTLEAVSVGSKRIKFTGSSLGTDDGNIIIDSGTTLTLLPEDFYSEL ESAVASQIKARRVDGPQGLSLCYDATTDFAVPNITIHFTNADVKLAPLNTFVLVSDTV SCFTFSSLQGFAIYGNLAQMNFLVGYDTEKQTVSFKPTDCSKN" gene complement(34289104..34294569) /locus_tag="TCM_025720" /note="dbxref CacaoGD:Thecc1EG025720" mRNA complement(join(34289104..34289562,34290612..34290710, 34291228..34291335,34291950..34292040,34292775..34292901, 34293075..34293165,34294021..34294082,34294199..34294284, 34294395..34294569)) /locus_tag="TCM_025720" /product="Nuclear matrix protein 1" /inference="alignment:exonerate- protein:2:ricco:30148.m001428" /inference="similar to AA sequence:ricco:30148.m001428" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14598t3" CDS complement(join(34289365..34289562,34290612..34290710, 34291228..34291335,34291950..34292040,34292775..34292901, 34293075..34293165,34294021..34294082,34294199..34294284, 34294395..34294528)) /locus_tag="TCM_025720" /note="dbxref ricco:30148.m001428" /codon_start=1 /product="Nuclear matrix protein 1" /protein_id="EOY10346.1" /db_xref="TAIR:AT5G17620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LD35" /translation="MAAKQMEEIQRKLSILNYPRANAPAQSLLFAGMERYALLEWLFF RLLGDKSPFSQQNLQGDAMDRDEETSRIQYLAEIAKFLGITTTIDTEAIQGRGSYEDR TEMLHLIVDLVEASICADNPEWSVDEQVAKDIQLIDAIAEKQALIFSEECKLFPADVQ IQSIYPLPDVSELESKLSEQSKILSNLQQKVDDLASKHAYNPDEEYAEVESKLRADLE SFLETARSFNMIYTKEIRPWTHMMEVPQLHGFGPAANRLLEAYKMLLKFLGNLRNLRD SHAALSVGSSETIAGEPSPVTRIISECESALTFLNRDLGILSASIAREQGEQVNS" mobile_element complement(34295872..34298456) /note="source:INTACT224_F176_scaffold_8-int 16737 19277" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 34299792..34301875 /locus_tag="TCM_025721" /note="dbxref CacaoGD:Thecc1EG025721" mRNA 34299792..34301875 /locus_tag="TCM_025721" /product="Nucleotide/sugar transporter family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g43070.1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s06910.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030978t2" /inference="similar to AA sequence:Phytozome:POPTR_0013s06910.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g06571t00001" CDS 34299928..34301199 /locus_tag="TCM_025721" /note="paralog of Thecc1EG030978t2" /codon_start=1 /product="Nucleotide/sugar transporter family protein" /protein_id="EOY10347.1" /db_xref="Phytozome:POPTR_0013s06910.1" /db_xref="TAIR:AT5G17630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LF61" /translation="MHTSNLISSSHVTFSKSTHQYYPTKRIENPKNFSYPPGFLNKST PHSPKLCNFHKIHCYPFGKIQGLGTKRTPFSYIHENPSRKPGSRIPRSAAASESNPEG EAEAAEVAAKSKAKTLQLALVFGFWYFQNIVFNIYNKKALNVFPFPWLLASFQLFAGS IWMFVLWSLKLQPCPKITKPFIIALLGPALFHTIGHISACVSFSKVAVSFTHVIKSSE PVFSVVFSSFLGDTYPLKVWLSIVPIVLGCSLAAITEVSFNFQGLWGALISNVGFVLR NIYSKKSLQNFKEVNGLNLYGWISIISLLYLFPVAVIVEGSQWVQGYHKAIETVGKAS TFYIWVLLSGIFYHLYNQSSYQALDEISPLTFSVGNTMKRVVVIVSTVLVFRNPVRPL NALGSGIAILGTFLYSQATAKKKSAGGEKKS" gene complement(34302373..34303167) /locus_tag="TCM_025722" /note="dbxref CacaoGD:Thecc1EG025722" mRNA complement(34302373..34303167) /locus_tag="TCM_025722" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.25 coverage" CDS complement(34302530..34302745) /locus_tag="TCM_025722" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10348.1" /translation="MTSTIERLHLALREKATNNMGALSPSLARKSSFTNSKSCLQLSN VDYFHTEKREDKTTYVCNLFQGYLSSC" mobile_element 34305673..34305801 /note="source:CACAO_PIF_E62_scaffold_2 7094 7223" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(34305798..34307732) /note="source:CACAO_PIF_E119_scaffold_3 10666 12604" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(34307833..34311074) /note="source:CACAO_PIF_E119_scaffold_3 6784 10074" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(34311860..34312305) /note="source:INTACT639F_F363_scaffold_5-int 8143 8575" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 34311992..34313336 /note="source:CACAO_on_E683_scaffold_9 1316 2302" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 34313341..34314265 /note="source:scaffold_10_CACTA_0130 11233 12172" /mobile_element_type="transposon:TIR/CACTA" gene 34321020..34322446 /locus_tag="TCM_025726" /note="dbxref CacaoGD:Thecc1EG025726" mRNA join(34321020..34321636,34321791..34321976, 34322084..34322446) /locus_tag="TCM_025726" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc2791t1" mobile_element complement(34321041..34321154) /note="source:scaffold_10_CACTA_0130 11743 11851" /mobile_element_type="transposon:TIR/CACTA" CDS join(34321147..34321636,34321791..34321951) /locus_tag="TCM_025726" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10349.1" /translation="MRFLNTSGLPAGGSKPNAVSCTSGSKLFLCFCFFSLTVLRFCFF SMPVVCFLQSPVSSCFICFLIKYFSFSSSTEELLLPVPKQRFVPFCSMIIFFSCTGSS TKRFVKLSDTISVSLLSHWFSLLVTALIAFINFCHESPSSTFSKFFNVNIFDFPNFSR FNKETRSSFAVRCGILCKSLILRDCGLQRGSELSGLERMAPLQIASDFPQMPRPQG" gene complement(34322614..34327496) /locus_tag="TCM_025727" /note="dbxref CacaoGD:Thecc1EG025727" mRNA complement(join(34322614..34323681,34324169..34325057, 34327020..34327496)) /locus_tag="TCM_025727" /product="Major facilitator superfamily protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene07459" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016727t1" /inference="similar to AA sequence:frave:gene07459" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:PASA:2:TSA:puevd3b024880t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8864t2" mRNA complement(join(34322614..34323681,34324165..34325057, 34327020..34327493)) /locus_tag="TCM_025727" /product="Major facilitator superfamily protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene07459" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016727t1" /inference="similar to AA sequence:frave:gene07459" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8864t2" mRNA complement(join(34322833..34323681,34324165..>34324880)) /locus_tag="TCM_025727" /product="Major facilitator superfamily protein isoform 3" /inference="alignment:exonerate-protein:2:frave:gene07459" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016727t1" /inference="similar to AA sequence:frave:gene07459" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is medium, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05968t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8864t2" CDS complement(join(34323207..34323681,34324165..34325057, 34327020..34327328)) /locus_tag="TCM_025727" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene07459; paralog of Thecc1EG016727t1" /codon_start=1 /product="Major facilitator superfamily protein isoform 1" /protein_id="EOY10350.1" /db_xref="TAIR:AT5G45275.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H051" /translation="MVGQSRKWMMLIATTWVQAFTGTNFDFSSYSSTLKTVLGISQVQ LNYLSVASDMGKAFGWCSGVSLMYLPLWVVMFMAAFLGLLGYGVQWFVIKQVITLPYF LVFLLCLVAGCSICWFNTVCFVLCIRNFANSRALALSLTISFNGVSAALYTLIANAIN PDDDTLYLFLNALVPLLASSLALIPILRQPPLQLLSTDAVSQDSFIFIILNVLAVITG LYLLLLNSLSSEASRARILLVGALILLLLPLCLPGIVCGRNWARHNIHTSFCLDGSTF SLVDPDDLELHKELLGSDYNNSLSVSNSFCVTNREGFFKKVMEKGRLTVLGEEHPARL LVHRWDFWLYYLAYFCGGTIGLVYSNNLGQIAQSRGFYSQISTVVTLYSSFSFFGRLL SAAPDFLRDKVYFARTGWLAVALVPTPIAFFLLAASGSEVALHAGTAMIGLSSGFVFS AAVSITSELFGPNSASVNHNILITNIPIGSLLYGLLAALVYDSNVKSYSQENSLGEAM VCMGRDCYQKTFIYWGCISLLGLISSFLLFLRTKPAYDHLERNRSRAQYS" CDS complement(join(34323207..34323681,34324165..>34324880)) /locus_tag="TCM_025727" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene07459; paralog of Thecc1EG016727t1" /codon_start=1 /product="Major facilitator superfamily protein isoform 3" /protein_id="EOY10352.1" /db_xref="TAIR:AT5G45275.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H051" /translation="DDTLYLFLNALVPLLASSLALIPILRQPPLQLLSTDAVSQDSFI FIILNVLAVITGLYLLLLNSLSSEASRARILLVGALILLLLPLCLPGIVCGRNWARHN IHTSFCLDGSTFSLVDPDDLELHKELLGSDYNNSLSVSNSFCVTNREGFFKKVMEKGR LTVLGEEHPARLLVHRWDFWLYYLAYFCGGTIGLVYSNNLGQIAQSRGFYSQISTVVT LYSSFSFFGRLLSAAPDFLRDKVYFARTGWLAVALVPTPIAFFLLAASGSEVALHAGT AMIGLSSGFVFSAAVSITSELFGPNSASVNHNILITNIPIGSLLYGLLAALVYDSNVK SYSQENSLGEAMVCMGRDCYQKTFIYWGCISLLGLISSFLLFLRTKPAYDHLERNRSR AQYS" CDS complement(join(34323650..34323681,34324169..34325057, 34327020..34327328)) /locus_tag="TCM_025727" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene07459; paralog of Thecc1EG016727t1" /codon_start=1 /product="Major facilitator superfamily protein isoform 2" /protein_id="EOY10351.1" /db_xref="TAIR:AT4G19450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H051" /translation="MVGQSRKWMMLIATTWVQAFTGTNFDFSSYSSTLKTVLGISQVQ LNYLSVASDMGKAFGWCSGVSLMYLPLWVVMFMAAFLGLLGYGVQWFVIKQVITLPYF LVFLLCLVAGCSICWFNTVCFVLCIRNFANSRALALSLTISFNGVSAALYTLIANAIN PDDDTLYLFLNALVPLLASSLALIPILRQPPLQLLSTDAVSQDSFIFIILNVLAVITG LYLLLLNSLSSEASRARILLVGALILLLLPLCLPGIVCGRNWARHNIHTSFCLDGSTF SLVDPDDLELHKELLGSDYNNSLSVSNSFCVTNREGFFKKVMEKGRLTVLGEEHPARL LVHRWDFWLYYLAYFCGGTIGLVYSNNLGQIAQSRGFYSQISTVVTLYSSFSFFGRLL SAAPDFLPRCTLPGPGG" gene 34328728..34346490 /locus_tag="TCM_025728" /note="dbxref CacaoGD:Thecc1EG025728" mRNA join(34328728..34329129,34329890..34329970, 34331399..34331536,34332129..34332239,34332341..34332391, 34332517..34332617,34332741..34332834,34333675..34333806, 34333893..34334153,34334265..34334343,34334769..34334860, 34334999..34335082,34335577..34335651,34335786..34335833, 34336902..34336997,34337208..34337437,34337839..34341335, 34341447..34341526,34341754..34341834,34343182..34343253, 34343329..34343434,34343553..34343607,34343863..34343991, 34344094..34344211,34344595..34344674,34345313..34346490) /locus_tag="TCM_025728" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s06900.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s06900.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc896t10" CDS join(34328965..34329129,34329890..34329970, 34331399..34331536,34332129..34332239,34332341..34332391, 34332517..34332617,34332741..34332834,34333675..34333806, 34333893..34334153,34334265..34334343,34334769..34334860, 34334999..34335082,34335577..34335651,34335786..34335833, 34336902..34336997,34337208..34337437,34337839..34341335, 34341447..34341526,34341754..34341834,34343182..34343253, 34343329..34343434,34343553..34343607,34343863..34343991, 34344094..34344211,34344595..34344674,34345313..34345733) /locus_tag="TCM_025728" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY10353.1" /db_xref="Phytozome:POPTR_0013s06900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I5F7" /translation="MEIELEPRVKPLSYKVKATSRESPSQKASNVLDTDLRTHWSTAT NTKEWILLELDEPCLLSHIRIYNKSVLEWEIAVGLRYKPETFVRVRPRCEAPRRDMMY PMNYTPCRYVRISCLRGNPIAIFFIQLIGISVTGLEPEFQPVVNHLLPQIMSHKQDAH DMYLQLLQDMTNRLLVFLPHLEADFANFSDAADSNLRFLAMLAGPFYPILHIVKERDT ARSSGNIADSEVPRNTQSLSLLTVSSNFEPRRSRNTSPFVLSTSSSIAFRSDAIFVLL RKAYKDSNLGTVCRMACRMLQKLTEPLTMVDELTPSAEVTPVLDESSKSELLNPLPMV DYSKLFGEEFQVIDDQWDPSILNVLDVGAVEEGILHVLYACASQPQLCSKLEDSTSDF WSALPLVQALLPALRPFMSSPSDHVDDTFSQWKQPFVQQALSQIVVTASSSLYHPLLQ ACAGYLSSYSPSHAKAACVLIDLCCGVLAPWITQVIAKVDLTVELVEDLLGIIQGARH SMARARAALKYIVLVLSGHMDDILGKYKEVKHNILFLVEMLEPFLDPAIYTSTSKIAF GDVSFAFLEKQEQTCLIALNIIRRAVQKPAVLPSIESEWRRRSVAPSVLLSILEPRIQ LPPEIDMCISPISEDVEHESLNASPVLHCESDGKTDVLETAVKMDALEDVSLLFAPPE LRSTTLTNVCSIPNENVLELNQMDLNSEQKDVEKKISNQFQNSLVLDAGFAAEYYNLQ ADYLQLMNFRDCELKASEFQRLASDLHSQHEISHESHDAAIDALLLAAECYVNPFFVI SLKASSNIMNKMNVCRVKIPKTFEMSELRRVTKKTNSNLQTISHLEKNRDKVVLKILL EAAELDRKYHKKLSDGEDCESYSVESDEQVIEISPFDIQSADAVTLVRQNQSLLCNFL IRRLQGEQHSLHEILMQCLVFLLHSATKLHCTPEHVIDIILQSANYLNGMLTSFSCRF KEGQCQLNPEKIHGLQRRWILLRRLVIASSGGGVGSDFAVNINNGFRHGNLIPPSAWM QKIPTFSHSTSPLVRFLGWMAISRNAKQFIEERLFLTSDMSELTYLLSIFADELAVVD KFVDPKHEDLKIEQSGDKQDSPIPNGVDLADGQHRYQSFRVIYPDLCKFFPNMKKQFE AFGEIILEAVGLQLKSLPSAVVPDILCWFSDLCSWPFFHKDQATSHSSCTHLKGHVAK NAKAIILYVLEAIVVEHMEALVPEIPRVVLVLVSLCRASYCDTSFLDSVLHLLKPIIS YSLHKVSDEEKLLVDDSCHNFESLCFDELFSNIRQRNENQDSSLEKAFSGALTIFILA SVFPDLSFQRRREILQSLTFWADFTAFEPSTSFHDYLCAFNAVMESCKVFLLQHLRVS NFVPLQLPPFSDSGKLGESGSESFSWFLNDILHGSTPNEISENLESNSFDAIVLNEKN YNLSEEEIEDFTKDLEGVISKLYPTIEQCWSLHHQLAKKLTIASAQCFVYSRCLLSMA PAIHNAEGYKNENSLPSKSVDRLPAQWKTGLEGLAGTILMLQENACWQVASVMLDCLL GVPLGFPLDNVIDSICTAIKNFSSKAPKISWRLQTDKWLSILCIRGIHSLHESEVPPL VNMFLTMLGHPEPEQRFIVLQHLGRLVGQDVDGGIMVQSSKFCSKIVSPGLVPSIPEK IISLLVSSTWDQVAVLASTDVSLSLRTRAMALLVDYVPFADRHQLQSFLAAADSLLYG LGRLVYPICEGPLLKLSLALITSACLYSPAEDISLIPQKVWENIETLGFSKAEYRLPD LEKKACQVLCRLRNEGDDAKEVLQEVLSSSSAKQSDPEFGSTRESVLQVLANLTSVQS YFDIFARETDQEAMELEEAELELDLIQKEGVLQESLKDSEDGHQLPRLATPVRDENRL QQIKDCIRSFEKNKLQDDIVARRQQKLLMRRARQKYLEEASLREAELLQELDRERTAE AEKDIERQRLLELERAKTRELRHNLDMEKERQTQRELQRELEQAESGLRSSRRDFPSS HSSRPRERYRERENGRSSNEGSTRTTSSSLQPENTTSSSMAAMPTVVLSGSRSFSGQP PTILQSRDRADECSSSYEENFDGSKDSGDTGSVGDPELVSAFDGQSGGFGSSQRHGSR GSKSRQVLERRERDGRRESKWERKHS" mRNA join(34332214..34332239,34332341..34332391, 34332517..34332617,34332741..34332834,34333675..34333806, 34333893..34334153,34334265..34334343,34334769..34334860, 34334999..34335082,34335577..34335651,34335786..34335833, 34336902..34336997,34337208..34337437,34337839..34341335, 34341447..34341526,34341754..34341834,34343182..34343253, 34343329..34343434,34343553..34343607,34343863..34343991, 34344094..34344211,34344595..34344670,34345313..34346364) /locus_tag="TCM_025728" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s06900.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s06900.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc896t2; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc896t10; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc960t4_C2" mRNA join(<34332214..34332239,34332341..34332391, 34332517..34332617,34332741..34332834,34333675..34333806, 34333893..34334153,34334265..34334343,34334769..34334860, 34334999..34335082,34335577..34335651,34335786..34335833, 34336902..34336997,34337208..34337437,34337839..34341335, 34341447..34341526,34341754..34341834,34343182..34343253, 34343329..34343434,34343553..34343607,34343863..34343991, 34344094..34344211,34344595..34344674,34345099..>34345159) /locus_tag="TCM_025728" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s06900.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s06900.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc896t5; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc896t10; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc960t4_C2" CDS join(<34332216..34332239,34332341..34332391, 34332517..34332617,34332741..34332834,34333675..34333806, 34333893..34334153,34334265..34334343,34334769..34334860, 34334999..34335082,34335577..34335651,34335786..34335833, 34336902..34336997,34337208..34337437,34337839..34341335, 34341447..34341526,34341754..34341834,34343182..34343253, 34343329..34343434,34343553..34343607,34343863..34343991, 34344094..34344211,34344595..34344674,34345099..>34345159) /locus_tag="TCM_025728" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY10355.1" /db_xref="Phytozome:POPTR_0013s06900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I5F7" /translation="DAHDMYLQLLQDMTNRLLVFLPHLEADFANFSDAADSNLRFLAM LAGPFYPILHIVKERDTARSSGNIADSEVPRNTQSLSLLTVSSNFEPRRSRNTSPFVL STSSSIAFRSDAIFVLLRKAYKDSNLGTVCRMACRMLQKLTEPLTMVDELTPSAEVTP VLDESSKSELLNPLPMVDYSKLFGEEFQVIDDQWDPSILNVLDVGAVEEGILHVLYAC ASQPQLCSKLEDSTSDFWSALPLVQALLPALRPFMSSPSDHVDDTFSQWKQPFVQQAL SQIVVTASSSLYHPLLQACAGYLSSYSPSHAKAACVLIDLCCGVLAPWITQVIAKVDL TVELVEDLLGIIQGARHSMARARAALKYIVLVLSGHMDDILGKYKEVKHNILFLVEML EPFLDPAIYTSTSKIAFGDVSFAFLEKQEQTCLIALNIIRRAVQKPAVLPSIESEWRR RSVAPSVLLSILEPRIQLPPEIDMCISPISEDVEHESLNASPVLHCESDGKTDVLETA VKMDALEDVSLLFAPPELRSTTLTNVCSIPNENVLELNQMDLNSEQKDVEKKISNQFQ NSLVLDAGFAAEYYNLQADYLQLMNFRDCELKASEFQRLASDLHSQHEISHESHDAAI DALLLAAECYVNPFFVISLKASSNIMNKMNVCRVKIPKTFEMSELRRVTKKTNSNLQT ISHLEKNRDKVVLKILLEAAELDRKYHKKLSDGEDCESYSVESDEQVIEISPFDIQSA DAVTLVRQNQSLLCNFLIRRLQGEQHSLHEILMQCLVFLLHSATKLHCTPEHVIDIIL QSANYLNGMLTSFSCRFKEGQCQLNPEKIHGLQRRWILLRRLVIASSGGGVGSDFAVN INNGFRHGNLIPPSAWMQKIPTFSHSTSPLVRFLGWMAISRNAKQFIEERLFLTSDMS ELTYLLSIFADELAVVDKFVDPKHEDLKIEQSGDKQDSPIPNGVDLADGQHRYQSFRV IYPDLCKFFPNMKKQFEAFGEIILEAVGLQLKSLPSAVVPDILCWFSDLCSWPFFHKD QATSHSSCTHLKGHVAKNAKAIILYVLEAIVVEHMEALVPEIPRVVLVLVSLCRASYC DTSFLDSVLHLLKPIISYSLHKVSDEEKLLVDDSCHNFESLCFDELFSNIRQRNENQD SSLEKAFSGALTIFILASVFPDLSFQRRREILQSLTFWADFTAFEPSTSFHDYLCAFN AVMESCKVFLLQHLRVSNFVPLQLPPFSDSGKLGESGSESFSWFLNDILHGSTPNEIS ENLESNSFDAIVLNEKNYNLSEEEIEDFTKDLEGVISKLYPTIEQCWSLHHQLAKKLT IASAQCFVYSRCLLSMAPAIHNAEGYKNENSLPSKSVDRLPAQWKTGLEGLAGTILML QENACWQVASVMLDCLLGVPLGFPLDNVIDSICTAIKNFSSKAPKISWRLQTDKWLSI LCIRGIHSLHESEVPPLVNMFLTMLGHPEPEQRFIVLQHLGRLVGQDVDGGIMVQSSK FCSKIVSPGLVPSIPEKIISLLVSSTWDQVAVLASTDVSLSLRTRAMALLVDYVPFAD RHQLQSFLAAADSLLYGLGRLVYPICEGPLLKLSLALITSACLYSPAEDISLIPQKVW ENIETLGFSKAEYRLPDLEKKACQVLCRLRNEGDDAKEVLQEVLSSSSAKQSDPEFGS TRESVLQVLANLTSVQSYFDIFARETDQEAMELEEAELELDLIQKEGVLQESLKDSED GHQLPRLATPVRDENRLQQIKDCIRSFEKNKLQDDIVARRQQKLLMRRARQKYLEEAS LREAELLQELDRERTAEAEKDIERQRLLELERAKTRELRHNLDMEKERQTQRELQREL EQAESGLRSSRRDFPSSHSSHCNMLFVGLGWLYPIHYDAY" CDS join(34332228..34332239,34332341..34332391, 34332517..34332617,34332741..34332834,34333675..34333806, 34333893..34334153,34334265..34334343,34334769..34334860, 34334999..34335082,34335577..34335651,34335786..34335833, 34336902..34336997,34337208..34337437,34337839..34341335, 34341447..34341526,34341754..34341834,34343182..34343253, 34343329..34343434,34343553..34343607,34343863..34343991, 34344094..34344211,34344595..34344670,34345313..34345593) /locus_tag="TCM_025728" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY10354.1" /db_xref="Phytozome:POPTR_0013s06900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I5F7" /translation="MYLQLLQDMTNRLLVFLPHLEADFANFSDAADSNLRFLAMLAGP FYPILHIVKERDTARSSGNIADSEVPRNTQSLSLLTVSSNFEPRRSRNTSPFVLSTSS SIAFRSDAIFVLLRKAYKDSNLGTVCRMACRMLQKLTEPLTMVDELTPSAEVTPVLDE SSKSELLNPLPMVDYSKLFGEEFQVIDDQWDPSILNVLDVGAVEEGILHVLYACASQP QLCSKLEDSTSDFWSALPLVQALLPALRPFMSSPSDHVDDTFSQWKQPFVQQALSQIV VTASSSLYHPLLQACAGYLSSYSPSHAKAACVLIDLCCGVLAPWITQVIAKVDLTVEL VEDLLGIIQGARHSMARARAALKYIVLVLSGHMDDILGKYKEVKHNILFLVEMLEPFL DPAIYTSTSKIAFGDVSFAFLEKQEQTCLIALNIIRRAVQKPAVLPSIESEWRRRSVA PSVLLSILEPRIQLPPEIDMCISPISEDVEHESLNASPVLHCESDGKTDVLETAVKMD ALEDVSLLFAPPELRSTTLTNVCSIPNENVLELNQMDLNSEQKDVEKKISNQFQNSLV LDAGFAAEYYNLQADYLQLMNFRDCELKASEFQRLASDLHSQHEISHESHDAAIDALL LAAECYVNPFFVISLKASSNIMNKMNVCRVKIPKTFEMSELRRVTKKTNSNLQTISHL EKNRDKVVLKILLEAAELDRKYHKKLSDGEDCESYSVESDEQVIEISPFDIQSADAVT LVRQNQSLLCNFLIRRLQGEQHSLHEILMQCLVFLLHSATKLHCTPEHVIDIILQSAN YLNGMLTSFSCRFKEGQCQLNPEKIHGLQRRWILLRRLVIASSGGGVGSDFAVNINNG FRHGNLIPPSAWMQKIPTFSHSTSPLVRFLGWMAISRNAKQFIEERLFLTSDMSELTY LLSIFADELAVVDKFVDPKHEDLKIEQSGDKQDSPIPNGVDLADGQHRYQSFRVIYPD LCKFFPNMKKQFEAFGEIILEAVGLQLKSLPSAVVPDILCWFSDLCSWPFFHKDQATS HSSCTHLKGHVAKNAKAIILYVLEAIVVEHMEALVPEIPRVVLVLVSLCRASYCDTSF LDSVLHLLKPIISYSLHKVSDEEKLLVDDSCHNFESLCFDELFSNIRQRNENQDSSLE KAFSGALTIFILASVFPDLSFQRRREILQSLTFWADFTAFEPSTSFHDYLCAFNAVME SCKVFLLQHLRVSNFVPLQLPPFSDSGKLGESGSESFSWFLNDILHGSTPNEISENLE SNSFDAIVLNEKNYNLSEEEIEDFTKDLEGVISKLYPTIEQCWSLHHQLAKKLTIASA QCFVYSRCLLSMAPAIHNAEGYKNENSLPSKSVDRLPAQWKTGLEGLAGTILMLQENA CWQVASVMLDCLLGVPLGFPLDNVIDSICTAIKNFSSKAPKISWRLQTDKWLSILCIR GIHSLHESEVPPLVNMFLTMLGHPEPEQRFIVLQHLGRLVGQDVDGGIMVQSSKFCSK IVSPGLVPSIPEKIISLLVSSTWDQVAVLASTDVSLSLRTRAMALLVDYVPFADRHQL QSFLAAADSLLYGLGRLVYPICEGPLLKLSLALITSACLYSPAEDISLIPQKVWENIE TLGFSKAEYRLPDLEKKACQVLCRLRNEGDDAKEVLQEVLSSSSAKQSDPEFGSTRES VLQVLANLTSVQSYFDIFARETDQEAMELEEAELELDLIQKEGVLQESLKDSEDGHQL PRLATPVRDENRLQQIKDCIRSFEKNKLQDDIVARRQQKLLMRRARQKYLEEASLREA ELLQELDRERTAEAEKDIERQRLLELERAKTRELRHNLDMEKERQTQRELQRELEQAE SGLRSSRRDFPSSHIGLGKGIVRGKMEDQVMKEAQELLVAACNLKIPLVHRWLQCQQL FCQDHDRFRASHPPFYNPVTVQMNVAAVTKKILMEVRTQETQVVLVIQS" mRNA join(34334124..34334142,34334265..34334343, 34334769..34334860,34334999..34335082,34335577..34335651, 34335786..34335833,34336902..34336997,34337208..34337437, 34337839..34341335,34341447..34341526,34341754..34341834, 34343182..34343253,34343329..34343434,34343553..34343607, 34343863..34343991,34344094..34344211,34344595..34344674, 34345313..34346360) /locus_tag="TCM_025728" /product="Uncharacterized protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s06900.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s06900.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc972t5_C2; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc896t10; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc960t4_C2" CDS join(34334128..34334142,34334265..34334343, 34334769..34334860,34334999..34335082,34335577..34335651, 34335786..34335833,34336902..34336997,34337208..34337437, 34337839..34341335,34341447..34341526,34341754..34341834, 34343182..34343253,34343329..34343434,34343553..34343607, 34343863..34343991,34344094..34344211,34344595..34344674, 34345313..34345733) /locus_tag="TCM_025728" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY10356.1" /db_xref="Phytozome:POPTR_0013s06900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I5F7" /translation="MFSMLPQLCSKLEDSTSDFWSALPLVQALLPALRPFMSSPSDHV DDTFSQWKQPFVQQALSQIVVTASSSLYHPLLQACAGYLSSYSPSHAKAACVLIDLCC GVLAPWITQVIAKVDLTVELVEDLLGIIQGARHSMARARAALKYIVLVLSGHMDDILG KYKEVKHNILFLVEMLEPFLDPAIYTSTSKIAFGDVSFAFLEKQEQTCLIALNIIRRA VQKPAVLPSIESEWRRRSVAPSVLLSILEPRIQLPPEIDMCISPISEDVEHESLNASP VLHCESDGKTDVLETAVKMDALEDVSLLFAPPELRSTTLTNVCSIPNENVLELNQMDL NSEQKDVEKKISNQFQNSLVLDAGFAAEYYNLQADYLQLMNFRDCELKASEFQRLASD LHSQHEISHESHDAAIDALLLAAECYVNPFFVISLKASSNIMNKMNVCRVKIPKTFEM SELRRVTKKTNSNLQTISHLEKNRDKVVLKILLEAAELDRKYHKKLSDGEDCESYSVE SDEQVIEISPFDIQSADAVTLVRQNQSLLCNFLIRRLQGEQHSLHEILMQCLVFLLHS ATKLHCTPEHVIDIILQSANYLNGMLTSFSCRFKEGQCQLNPEKIHGLQRRWILLRRL VIASSGGGVGSDFAVNINNGFRHGNLIPPSAWMQKIPTFSHSTSPLVRFLGWMAISRN AKQFIEERLFLTSDMSELTYLLSIFADELAVVDKFVDPKHEDLKIEQSGDKQDSPIPN GVDLADGQHRYQSFRVIYPDLCKFFPNMKKQFEAFGEIILEAVGLQLKSLPSAVVPDI LCWFSDLCSWPFFHKDQATSHSSCTHLKGHVAKNAKAIILYVLEAIVVEHMEALVPEI PRVVLVLVSLCRASYCDTSFLDSVLHLLKPIISYSLHKVSDEEKLLVDDSCHNFESLC FDELFSNIRQRNENQDSSLEKAFSGALTIFILASVFPDLSFQRRREILQSLTFWADFT AFEPSTSFHDYLCAFNAVMESCKVFLLQHLRVSNFVPLQLPPFSDSGKLGESGSESFS WFLNDILHGSTPNEISENLESNSFDAIVLNEKNYNLSEEEIEDFTKDLEGVISKLYPT IEQCWSLHHQLAKKLTIASAQCFVYSRCLLSMAPAIHNAEGYKNENSLPSKSVDRLPA QWKTGLEGLAGTILMLQENACWQVASVMLDCLLGVPLGFPLDNVIDSICTAIKNFSSK APKISWRLQTDKWLSILCIRGIHSLHESEVPPLVNMFLTMLGHPEPEQRFIVLQHLGR LVGQDVDGGIMVQSSKFCSKIVSPGLVPSIPEKIISLLVSSTWDQVAVLASTDVSLSL RTRAMALLVDYVPFADRHQLQSFLAAADSLLYGLGRLVYPICEGPLLKLSLALITSAC LYSPAEDISLIPQKVWENIETLGFSKAEYRLPDLEKKACQVLCRLRNEGDDAKEVLQE VLSSSSAKQSDPEFGSTRESVLQVLANLTSVQSYFDIFARETDQEAMELEEAELELDL IQKEGVLQESLKDSEDGHQLPRLATPVRDENRLQQIKDCIRSFEKNKLQDDIVARRQQ KLLMRRARQKYLEEASLREAELLQELDRERTAEAEKDIERQRLLELERAKTRELRHNL DMEKERQTQRELQRELEQAESGLRSSRRDFPSSHSSRPRERYRERENGRSSNEGSTRT TSSSLQPENTTSSSMAAMPTVVLSGSRSFSGQPPTILQSRDRADECSSSYEENFDGSK DSGDTGSVGDPELVSAFDGQSGGFGSSQRHGSRGSKSRQVLERRERDGRRESKWERKH S" gene 34346785..34348767 /locus_tag="TCM_025729" /note="dbxref CacaoGD:Thecc1EG025729" mRNA join(34346785..34346860,34347192..34347351, 34347581..34347667,34348464..34348767) /locus_tag="TCM_025729" /product="Tubulin folding cofactor A (KIESEL)" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01018312001" /inference="similar to AA sequence:Phytozome:GSVIVT01018312001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g13378t00001" CDS join(34347199..34347351,34347581..34347667, 34348464..34348565) /locus_tag="TCM_025729" /codon_start=1 /product="Tubulin folding cofactor A (KIESEL)" /protein_id="EOY10357.1" /db_xref="Phytozome:GSVIVT01018312001" /db_xref="TAIR:AT2G30410.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O04350" /translation="MATIRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKEKGAD PYDLKQQENVLAESRMMIPDCRKRLEASLADLKGTLAELDETNEKEGPEFEDARSTIT EVEKLFQTTEA" gene complement(34349452..34354202) /locus_tag="TCM_025730" /note="dbxref CacaoGD:Thecc1EG025730" mRNA complement(join(34349452..34349959,34350069..34350731, 34351130..34351796,34353809..34354195)) /locus_tag="TCM_025730" /product="Nuclear factor 1 A-type isoform 1" /inference="alignment:exonerate- protein:2:ricco:30148.m001418" /inference="similar to AA sequence:Phytozome:POPTR_0013s06840.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14600t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14600t1" mRNA complement(join(34349519..34350731,34351130..34351796, 34353809..34354202)) /locus_tag="TCM_025730" /product="Nuclear factor 1 A-type isoform 2" /inference="alignment:exonerate- protein:2:ricco:30148.m001418" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034618t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s06840.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Newbler:10:TSA:cgbaL_g08203t00001; inference alignment:Newbler:10:TSA:cgbaP1_g02920t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14600t1" CDS complement(join(34349755..34349959,34350069..34350731, 34351130..34351737)) /locus_tag="TCM_025730" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Nuclear factor 1 A-type isoform 1" /protein_id="EOY10358.1" /db_xref="Phytozome:POPTR_0013s06840.1" /db_xref="TAIR:AT5G17640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LF60" /translation="MDPQAFIRLSIGSLGLRIPGSALNSSKAGIHAFSSPFSCEIRLR GFPVQTTSIPLVSSPEATPDIHSIASSFYLEDSDVKALLTPGCFYNPHAYLEISVFTG RKGSHCGVGVKRQQIGTFKLEVGPEWGEGKPVILFNGWIGIGKNKHENGKPGAELHLR VKLDPDPRYVFQFEDVTMLSPQIVQLQGSIKQPIFSCKFSRDRVAQVDPLSTYWSGSA DSLDIETERRERKGWKVKIHDLSGSAVAAAFITTPFVPSTGCDWVARSNPGAWLIVRP DICRPESWLPWGKLEAWRERGIRDSICCRFHLLSEAQDGAEVLMSEILISAEKGGEFF IDTDRQMRRAPTPIPSPQSSGDFSALSPIAGGFVMSCRVQGEGKSSKPLVQLAMRHVT CVEDAAIFMALAAAVDLSIEACKPFRRRIRRGIFWFRLFKNCSTHLWCQYSLHDTYLS SLQAGAFVQLVRLFCFSVLIGLGEIEFLPPLTLTELPPPLG" CDS complement(join(34350050..34350731,34351130..34351737)) /locus_tag="TCM_025730" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG034618t1" /codon_start=1 /product="Nuclear factor 1 A-type isoform 2" /protein_id="EOY10359.1" /db_xref="Phytozome:POPTR_0013s06840.1" /db_xref="TAIR:AT5G17640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LF60" /translation="MDPQAFIRLSIGSLGLRIPGSALNSSKAGIHAFSSPFSCEIRLR GFPVQTTSIPLVSSPEATPDIHSIASSFYLEDSDVKALLTPGCFYNPHAYLEISVFTG RKGSHCGVGVKRQQIGTFKLEVGPEWGEGKPVILFNGWIGIGKNKHENGKPGAELHLR VKLDPDPRYVFQFEDVTMLSPQIVQLQGSIKQPIFSCKFSRDRVAQVDPLSTYWSGSA DSLDIETERRERKGWKVKIHDLSGSAVAAAFITTPFVPSTGCDWVARSNPGAWLIVRP DICRPESWLPWGKLEAWRERGIRDSICCRFHLLSEAQDGAEVLMSEILISAEKGGEFF IDTDRQMRRAPTPIPSPQSSGDFSALSPIAGGFVMSCRVQGEGKSSKPLVQLAMRHVT CVEDAAIFMALAAAVDLSIEACKPFRRRIRRGSGHSL" mobile_element 34357102..34357236 /note="source:scaffold_4_CACTA_0510 5738 5885" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(34358103..34358539) /note="source:scaffold_1_CACTA_0008 13989 14410" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(34360222..34362042) /note="source:CACAO_hAT_E410_scaffold_1 612 2469" /mobile_element_type="transposon:TIR/hAT" gene complement(34362284..34364770) /locus_tag="TCM_025731" /note="dbxref CacaoGD:Thecc1EG025731" mRNA complement(join(34362284..34362734,34363111..34363454, 34364719..34364770)) /locus_tag="TCM_025731" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019304001.2" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00906t00001_C1; alternateUTRof:Thecc1EG025731t2; inference alignment:Newbler:10:TSA:cgbaP1_g08038t00001" mRNA complement(join(34362284..34362734,34363111..34363454, 34364593..34364641)) /locus_tag="TCM_025731" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019304001.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00906t00002_C1; inference alignment:Newbler:10:TSA:cgbaP1_g08038t00001" mRNA complement(join(34362366..34362734,34363009..34363454, 34364593..34364738)) /locus_tag="TCM_025731" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019304001.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g08038t00001" CDS complement(join(34362487..34362734,34363111..34363414)) /locus_tag="TCM_025731" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY10361.1" /translation="MGGGKDKNEGESSDKGLFSNLAGYAAGHYPPPGSYPSHGYPPQG YPPAGYPPPGGYPPPGGYPPAGYPPPGGHPPAAYPPHGGYPPAGYPPHGGYPPAGYPG HGSHGHGVGGLIAGGAAAAAAAYGAHHVAHGAHNLAHGGYYGHGHGKFKHGKFKHGKF GKHGRPGMFGKHKGKFFGYKKWK" CDS complement(join(34362487..34362734,34363111..34363414)) /locus_tag="TCM_025731" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY10362.1" /translation="MGGGKDKNEGESSDKGLFSNLAGYAAGHYPPPGSYPSHGYPPQG YPPAGYPPPGGYPPPGGYPPAGYPPPGGHPPAAYPPHGGYPPAGYPPHGGYPPAGYPG HGSHGHGVGGLIAGGAAAAAAAYGAHHVAHGAHNLAHGGYYGHGHGKFKHGKFKHGKF GKHGRPGMFGKHKGKFFGYKKWK" CDS complement(join(34362487..34362734,34363009..34363414)) /locus_tag="TCM_025731" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY10360.1" /translation="MGGGKDKNEGESSDKGLFSNLAGYAAGHYPPPGSYPSHGYPPQG YPPAGYPPPGGYPPPGGYPPAGYPPPGGHPPAAYPPHGGYPPAGYPPHGGYPPAGYPG RLHDPFSFPMAVSLLVHYKFELLSLPIVGLMVFGHGSHGHGVGGLIAGGAAAAAAAYG AHHVAHGAHNLAHGGYYGHGHGKFKHGKFKHGKFGKHGRPGMFGKHKGKFFGYKKWK" gene complement(34363581..34369852) /locus_tag="TCM_025733" /note="dbxref CacaoGD:Thecc1EG025733" mRNA complement(join(34363581..34363958,34364275..34364815, 34366239..34366347,34366450..34366633,34367671..34367769, 34367848..34367932,34368011..34368060,34368212..34368291, 34369063..34369138,34369327..34369383,34369572..34369852)) /locus_tag="TCM_025733" /product="TRNA methyltransferase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s06800.1" /inference="similar to AA sequence:Phytozome:GSVIVT01019305001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaL_g09234t00001" mobile_element complement(34363635..34363689) /note="source:CACAO_M_E42804_F230_scaffold_5 1757 1811" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(34366241..34366347,34366450..34366633, 34367671..34367769,34367848..34367932,34368011..34368060, 34368212..34368291,34369063..34369138,34369327..34369383, 34369572..34369808)) /locus_tag="TCM_025733" /codon_start=1 /product="TRNA methyltransferase" /protein_id="EOY10363.1" /db_xref="Phytozome:GSVIVT01019305001" /db_xref="TAIR:AT5G17660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L8R4" /translation="MASFVCLHICAVPRAAKQALSSLVLLHKLPSSHQPNYCITKAFT SSSASVSIDANKELRSNELVALEYADLNLTDKISQELGHVRIRQHVNPLSSSFSVPAS IPDWSEVFRDPTLPLMVDIGCGSGRFLMWLAKQNSDSQNYLGLEIRAKLVKRAGFWVK ELALSNIHFIFANASISFKHLVSTYPGPLMLVSILCPDPHFKKRHHKRRVVQKPLVDS ILTSLMPGGKVIIQSDVLEVAVDMRKQFDLEPGALQHVDTVDPSVLCDDEGWLMNNPM GIRTEREIHAEFEGSFKPAKKAASRKHHGFKPSSILLNLKLQTLFFIE" gene 34370017..34374326 /locus_tag="TCM_025734" /note="dbxref CacaoGD:Thecc1EG025734" mRNA join(34370017..34370191,34370298..34370470, 34370618..34370670,34371969..34372083,34372425..34372547, 34373410..34373581,34373693..34373728,34373818..34374326) /locus_tag="TCM_025734" /product="Alpha/beta-Hydrolases superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30148.m001414" /inference="similar to AA sequence:Phytozome:POPTR_0013s06790.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03293t00002" CDS join(34370090..34370191,34370298..34370470, 34370618..34370670,34371969..34372083,34372425..34372547, 34373410..34373581,34373693..34373728,34373818..34374003) /locus_tag="TCM_025734" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein" /protein_id="EOY10364.1" /db_xref="Phytozome:POPTR_0013s06790.1" /db_xref="TAIR:AT5G17670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FN84" /translation="MALALPPLNFKPQCSSSSSSSSSSTNYRPAVILPGLGNNTGDYK KLELTLQEYGVPTVVAKVSRIDWLRNAAGLVDPNYWKGTLQPRPVLDWYLKRVDDAVQ EAKELAQGGTLSLIGHSAGGWLARVYMEEFGFSHISLLLTLGTPHLPPPKDLQGVIDQ TRGLLYYVEKHCKKAVYTPELKYVCIAGRYLQGARLVSDSKLDADSVVSIDPDQPISD VAVVKNKTDSTSVSTTFRARFVGQGYKQISLAYFMSMFSQVCGQADVWGDGVVPEESA HLEGALNISLDGVYHSPVGSDDVSRPWYGSSPVVEQWIHHLLN" gene complement(34374128..34377622) /locus_tag="TCM_025735" /note="dbxref CacaoGD:Thecc1EG025735" mRNA complement(join(34374128..34374893,34374977..34374996, 34375081..34375159,34375251..34375323,34375767..34375837, 34377094..34377622)) /locus_tag="TCM_025735" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma11g09580.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14645t2" CDS complement(join(34374768..34374893,34374977..34374996, 34375081..34375159,34375251..34375323,34375767..34375837, 34377094..34377426)) /locus_tag="TCM_025735" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10365.1" /translation="MSRILQGFRALLASPAVSTSSSATAAAKFSSASAAAAKPAATKV SRKPKKPTTSKPKADKPAAPRTTNRPTGISKVTPVSPALGQFLGAQQASRTEAVKQIW TYIKSHNLQVVFGEGMMFFPEFQQREMDGETERSQMRKDKYGRMVENWCKTDKPLCTA ENDNPVFTQSHDFYVDDRVSFSAGLYFAQISYNPSNKREIFCDEKLKAIFYGKEKIGF LEIGKLLTGHFVKTD" mobile_element 34378631..34378714 /note="source:scaffold_2_CACTA_0248 14092 14175" /mobile_element_type="transposon:TIR/CACTA" mobile_element 34381988..34382067 /note="source:CACAO_M_E69780_F2_scaffold_9 1568 1651" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 34382493..34384020 /locus_tag="TCM_025737" /note="dbxref CacaoGD:Thecc1EG025737" mRNA 34382493..34384020 /locus_tag="TCM_025737" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030807t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS 34382573..34383757 /locus_tag="TCM_025737" /note="paralog of Thecc1EG030807t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10366.1" /translation="MEGEEINKTEEKKIYCLCRLPVDVLEIILRYLSVLDYIKFRTVS KCWRLAFSTCASSSSIILQQRPERELPWFVVLKTKPEGRKHRGCPVLHTEGLLGNMRS RVAYKTDMPELCGTRILLSKYGWLLLFKGNDNSCSSSSLYFFNPFSKAKIVLPSMDVT KLRSPLFDISAPPTSPDCMVFIAYWVQWKRVMIDLCRKGESNWTSYGGGPGGPIINAV FAKGIWYYLHSDGELSAFDAVHHHYICTPGILGLDFSFYTFSRLVSYAVKRGEQVLLR IHACCGCYEIALSSPHLLVATTINRGPEDPEYLFLTDAEKAMEREREVICVDSFNPDA WCLVYPSADTFECRWHQFISNRIPHYDLREISCHVRNKCSTFLMWFEPVWVEPSPNLT WT" gene complement(34384736..34387870) /locus_tag="TCM_025738" /note="dbxref CacaoGD:Thecc1EG025738" mRNA complement(join(34384736..34386846,34387468..34387510, 34387597..34387870)) /locus_tag="TCM_025738" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.36 coverage" CDS complement(join(34385709..34386846,34387468..34387510, 34387597..34387831)) /locus_tag="TCM_025738" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10367.1" /translation="MESEDEHDLEKEEIEQMEKEREQVEAEIEQMEKEHAKDILEMEL EDVEDELEENEEIPHLPARFGWISSSSDDDDDLKDFLCILIILKLAIKLLLSAIQTEN VEKRKQGLGKLIEMLGDMVEISRIGFDDILKSLMISLDSEGLMVLQSILTLTSQPQLT EAQVRQLMPKLDLILMEGKINETDQMLHCLSIIVHSNFNLLGRYKLLVAKSVAYCWRQ MQLYDEMVQWLEKIIKKDHCDAEDKVTVSALKQKSSLLFCLVILGIVENCSAMDQVIL GELKNLNREEFAKEWQKLEVAGYSAMQHLVTYMLTASLSFCQFHQVSGKSISEIAFLS APNGVWQDLEFEFNCILDGCDMVKITSVLFALEKILSCCLTEGSLVLRREIQKFFLFI LHWVGRNTAAGETIKTKIQCRPDYVRSRDTRAAILQKLEENRSYPKISESIDLLNKED KMKVNPNSPFPFPKSVPGQPH" gene 34387963..34389152 /locus_tag="TCM_025739" /note="dbxref CacaoGD:Thecc1EG025739" mRNA join(34387963..34388146,34388225..34389152) /locus_tag="TCM_025739" /product="Alpha/beta-Hydrolases superfamily protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025734t1" /inference="similar to AA sequence:frave:gene03005" /note="quality class is strong, express is medium, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.54 coverage" CDS join(34388138..34388146,34388225..34388410) /locus_tag="TCM_025739" /note="dbxref frave:gene03005; paralog of Thecc1EG025734t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein" /protein_id="EOY10368.1" /db_xref="TAIR:AT5G17670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FN84" /translation="MTGVCGQADVWGDGVVPEVSAHLEGALNISLDGVYHSPVGSDDV STPWYGSPAVVEQWIHHLLA" gene complement(34389153..34391295) /locus_tag="TCM_025740" /note="dbxref CacaoGD:Thecc1EG025740" mRNA complement(join(34389153..34389722,34390586..34390664, 34391181..34391295)) /locus_tag="TCM_025740" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc292t13" CDS complement(join(34389436..34389722,34390586..34390664, 34391181..34391270)) /locus_tag="TCM_025740" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10369.1" /translation="MISTPQGSTRSFVLLTIKGFGAPLGSSRSGVVFGQGMMFFPEFQ QRERVGETERFIESQQQEEDLCDEKLKAIFDGKEKIGFLEIGKLLTRHFVKTDWPLLL YLALGFPTKNEVAPVILNLTLFNVCSCLHFVFRAELAGVGLGKVLATLV" mobile_element 34391021..34391089 /note="source:scaffold_5_CACTA_0584 1317 1394" /mobile_element_type="transposon:TIR/CACTA" gene 34392376..34397329 /locus_tag="TCM_025741" /note="dbxref CacaoGD:Thecc1EG025741" mRNA join(34392376..34392827,34393607..34393714, 34394022..34394212,34394768..34395373,34395690..34395920, 34396060..34396200,34396374..34396598,34396695..34397329) /locus_tag="TCM_025741" /product="RNApolymerase sigma subunit 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019326001" /inference="similar to AA sequence:frave:gene17946" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Newbler:10:TSA:cgbaL_g12839t00001" CDS join(34392749..34392827,34393607..34393714, 34394022..34394212,34394768..34395373,34395690..34395920, 34396060..34396200,34396374..34396598,34396695..34396985) /locus_tag="TCM_025741" /note="dbxref frave:gene17946" /codon_start=1 /product="RNApolymerase sigma subunit 2" /protein_id="EOY10370.1" /db_xref="TAIR:AT1G08540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7UB90" /translation="MSCLLPQFKCQPDTFSIQFRTHHSHHFLIAVTGMVKYFSPRQCS CGNLTNPPKVSGLIFVVLAKHKEHICFRTQCVLSTTSSSTSTTATAVLDVEKLRLPSF EAHPNSVAVDRPWTYIGATGPPSEASLGATLATDNLLTSDEAVIAAAAAEAVALARAA VKVAKDAALMAENYNYAKTEMKSGVSFATDSFTSKWALFTEAERAGIIGDSPTDESEM EEDDSEQNSTTESDELEPTNEELEHLEEQLSRSIAVRSRRQTERKAKRTRAAEKAAAN VVSVKSGSTNRKRRGALQDVDYSDPLRYLRGTTSTSRLLTANEELELSEGIQDLLKLE RLQEELAERCGGQPTFAQWAAAAGVDQKTLRSRLNYGVHCKDKMIKSNIRLVISIAKN YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR LPFHMVEATYRVKEARKQLYSENGRHPDNEEVAEATGLSMKRLTAVLLTPKAPRSLDQ KIGINQNLKPSVCPVSSLAEVIADPEAETAEDMLIKQFMRKDLEKVLDSLSQRERQVI RWRFGMEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLLSYAS" gene 34397946..34400000 /locus_tag="TCM_025742" /note="dbxref CacaoGD:Thecc1EG025742" mRNA join(34397946..34398115,34398222..34398333, 34398430..34398539,34398616..34398680,34399103..34399242, 34399330..34399541,34399631..34400000) /locus_tag="TCM_025742" /product="Plasma membrane" /inference="alignment:exonerate- protein:2:TAIR:AT5G11680.1" /inference="similar to AA sequence:TAIR:AT5G11680.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g07634t00001" CDS join(34398006..34398115,34398222..34398333, 34398430..34398539,34398616..34398680,34399103..34399242, 34399330..34399541,34399631..34399739) /locus_tag="TCM_025742" /codon_start=1 /product="Plasma membrane" /protein_id="EOY10371.1" /db_xref="TAIR:AT5G11680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LYG2" /translation="MALNPQLFQNGMPIPFTNEMLVLVRDGVEFEVDKIPGSNGGRVK ARGAIYLSNIRMVFVATHPDGNFFAFDMPLFPYSPWVEDLDNVNEGSPVLKPKALVGL SQNLALLLRLLRLSLATSFVVYPFLLKFPSEYLGQIVLHIEADLYIYSSSFMQLYVHD EKFNQPIFHCNNISGHVEPVVPENEHRALYSTHSFKILFKEGGCGTFVPLFLNLISSV RQYNQQVNPGPEPRMDPLQAAQTPVDEMMRHAYIDPNDPTRIFLQQPDTQSQLRRRTY QSQPVEGSM" mobile_element complement(34400266..34401995) /note="source:CACAO_PIF_E38_scaffold_2 1487 3229" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 34401568..34402355 /note="source:CACAO_on_E59_A_scaffold_8 1589 2374" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 34402357..34403785 /note="source:CACAO_on_E59_A_scaffold_8 1688 3063" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 34403897..34404147 /note="source:scaffold_3_CACTA_0377 4993 5288" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(34403927..34404128) /note="source:scaffold_7_CACTA_0795 2842 3059" /mobile_element_type="transposon:TIR/CACTA" gene 34404396..34409252 /locus_tag="TCM_025743" /note="dbxref CacaoGD:Thecc1EG025743" mRNA join(34404396..34404867,34405277..34405302, 34405429..34405516,34405937..34406722,34408244..34408307, 34408410..34408438,34408832..34409252) /locus_tag="TCM_025743" /product="Chromodomain protein, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:30148.m001410" /inference="similar to AA sequence:Phytozome:POPTR_0019s06120.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8930t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14605t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8930t2" mRNA join(34404396..34404867,34405277..34405302, 34405430..34405516,34405937..34406722,34408247..34408307, 34408410..34408605,34408832..34409252) /locus_tag="TCM_025743" /product="Chromodomain protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30148.m001410" /inference="similar to AA sequence:Phytozome:POPTR_0019s06120.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8930t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8930t2" mRNA join(34404396..34404867,34405277..34405302, 34405430..34405516,34405937..34406722,34408247..34408307, 34408410..34408438,34408832..34409252) /locus_tag="TCM_025743" /product="Chromodomain protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30148.m001410" /inference="similar to AA sequence:Phytozome:POPTR_0019s06120.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8930t3; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14605t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g8930t2" CDS join(34404583..34404867,34405277..34405302, 34405430..34405516,34405937..34406722,34408247..34408307, 34408410..34408438,34408832..34408865) /locus_tag="TCM_025743" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Chromodomain protein, putative isoform 2" /protein_id="EOY10373.1" /db_xref="Phytozome:POPTR_0019s06120.1" /db_xref="TAIR:AT5G17690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I6F0" /translation="MKGGGRKRVVQSEEAGGGEKEKKRGGTSEQIVESEGLGEKKKEE EGEEEEEEEEEDEEEEEGEEEENNEGKEEERTKLDDGFFEIEAIRRKRVRKGQLQYLI KWRGWPETANTWEPLENLQSCSDVIDAFEESLRSGKQNRKRKRKYGGPHTQSKKKQPR SSATTYNATGLEVSVVDKSLSLVPLDNSGIADLAASSPVTVSAREGETNGSANNVKVA NRVKENGSANGSKQIDERKDENDYDTKLSELKGAISSNGVNADKLAMRFQEGKASESD GLANGLQKVDRGESVHSDRRTGAKRRKSGSVKRFKQDLVSSGPNLTPNATPNIHVGYA IADAQIGIEGLGLTADGLSHRPQIDNSVNVPVISKILKPVGFSASVSDNIQDVSVTFL AIRSDGKEVMVDNRYLKANNPLLLINFYEQHLKPHKELGMVSW" CDS join(34404583..34404867,34405277..34405302, 34405430..34405516,34405937..34406722,34408247..34408307, 34408410..34408457) /locus_tag="TCM_025743" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Chromodomain protein, putative isoform 1" /protein_id="EOY10372.1" /db_xref="Phytozome:POPTR_0019s06120.1" /db_xref="TAIR:AT5G17690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I6F0" /translation="MKGGGRKRVVQSEEAGGGEKEKKRGGTSEQIVESEGLGEKKKEE EGEEEEEEEEEDEEEEEGEEEENNEGKEEERTKLDDGFFEIEAIRRKRVRKGQLQYLI KWRGWPETANTWEPLENLQSCSDVIDAFEESLRSGKQNRKRKRKYGGPHTQSKKKQPR SSATTYNATGLEVSVVDKSLSLVPLDNSGIADLAASSPVTVSAREGETNGSANNVKVA NRVKENGSANGSKQIDERKDENDYDTKLSELKGAISSNGVNADKLAMRFQEGKASESD GLANGLQKVDRGESVHSDRRTGAKRRKSGSVKRFKQDLVSSGPNLTPNATPNIHVGYA IADAQIGIEGLGLTADGLSHRPQIDNSVNVPVISKILKPVGFSASVSDNIQDVSVTFL AIRSDGKEVMVDNRYLKANNPLLLINFYEQHLKYSPTS" CDS join(34404749..34404867,34405277..34405302, 34405429..34405516,34405937..34406722,34408244..34408307, 34408410..34408438,34408832..34408865) /locus_tag="TCM_025743" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Chromodomain protein, putative isoform 3" /protein_id="EOY10374.1" /db_xref="Phytozome:POPTR_0019s06120.1" /db_xref="TAIR:AT5G17690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I6F0" /translation="MKKKKKEKKKKIMKAKKKKGLSLMMGSLRLKLFAVKGFERVSFS ISSNGRGWPETANTWEPLENLQSCSDVIDAFEESLRSGKQNRKRKRKYGGPHTQSKKK QPRSSATTYNATGLEVSVVDKSLSLVPLDNSGIADLAASSPVTVSAREGETNGSANNV KVANRVKENGSANGSKQIDERKDENDYDTKLSELKGAISSNGVNADKLAMRFQEGKAS ESDGLANGLQKVDRGESVHSDRRTGAKRRKSGSVKRFKQDLVSSGPNLTPNATPNIHV GYAIADAQIGIEGLGLTADGLSHRPQIDNSVNVPVISKILKPVGFSASVSDNIQDVSV TFLAISRSDGKEVMVDNRYLKANNPLLLINFYEQHLKPHKELGMVSW" gene 34410105..34410824 /locus_tag="TCM_025744" /note="dbxref CacaoGD:Thecc1EG025744" mRNA 34410105..34410824 /locus_tag="TCM_025744" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.95 coverage" CDS 34410178..34410519 /locus_tag="TCM_025744" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10375.1" /translation="MRRSGPSPLVPSLMVGVLGLVIFGPTLQSILEFVLPLFEAGDSE SDTFYVVMVLVLLLLLVLVQLLSTFFPTLHMFSSPSVQQTSSSAFDDGFGLGTLILVV LFLVLCKFWSV" gene 34411205..34413942 /locus_tag="TCM_025745" /note="dbxref CacaoGD:Thecc1EG025745" mRNA 34411205..34413942 /locus_tag="TCM_025745" /product="Tetratricopeptide repeat (TPR)-like superfamily protein" /inference="alignment:exonerate- protein:2:TAIR:AT3G23330.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038026t1" /inference="similar to AA sequence:TAIR:AT3G23330.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1907t1" CDS 34411522..34413684 /locus_tag="TCM_025745" /note="paralog of Thecc1EG038026t1" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein" /protein_id="EOY10376.1" /db_xref="TAIR:AT3G23330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HMU0" /translation="MTSSSTPKTLVKTLLKTPQSLKTKSQAKELHAQFLKTQPHSPSS TSILISMYTNFNLLHDSLFLFNSLSSPPLLAWKSITKCLANSGLFLNSLTCFVQMRGL GIYPDHKILPFVLKACAFIKNLRLGESIHGCIIRLGLDFDLFTGNALLNMYAKFQSLE VNGGHKVFTFNMLDGMPKGNELCGRLAQKKGRNVFQLDSVRKVFDMMPKRDVVSWNTV IAGNAQNGMYEVALRMVREMGNANMKPDSYTLSSVLPIFAEYVDVMKGKEIHGYAIRH RFDSDWYIGSSLVDMYANCSRIEDSCRVFNLFPQRDDISWNSIIAGCVQNGMFDKGLN LFRQMLTAKVKPRDVSFSSIMPACAYLTTLHLGKELHGYIIRGGFDDNVFVASSLVDM YAKCGNIKAARWIFDQMEYHDMVSWTAIIMGYALHGHAHEALLLFKQMEMDGVKPNYV SFIAVFTACSHAGLTDEAWRHFNCMTQNHGITPGLEHYAAMADLLARAGKLEEAYEFI SSMHIAPTGSIWSTLLSACRVHKNLELAEKVAKRLFEVDPENVGAYVLMSNIYAAAQR WKDAAKMRSSLKKKGIRKEPACSWIEVKNRVHTFMSGDKSHPLYERIYKAWKDLLEQM EREGYIPDTSEVCHDVEEEQKKYLLFSHSERLALAFGIISTPTGTTLRITKNIRVCVD CHTAIKFMSKISQREIIVRDNSRFHHFKDGKCSCRDYW" gene complement(34413988..34418894) /locus_tag="TCM_025746" /note="dbxref CacaoGD:Thecc1EG025746" mRNA complement(join(34413988..34414456,34414764..34418246, 34418337..34418894)) /locus_tag="TCM_025746" /product="Leucine-rich repeat containing protein, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene05887" /inference="similar to AA sequence:ricco:30148.m001424" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14621t1" mRNA complement(join(34414429..34414456,34414764..34418243, 34418332..34418748)) /locus_tag="TCM_025746" /product="Leucine-rich repeat containing protein, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene05887" /inference="similar to AA sequence:ricco:30148.m001424" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc7t1; alternateUTRof:Thecc1EG025746t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14621t1; inference alignment:Newbler:10:TSA:cgbaP2_g01836t00002" mRNA complement(join(34414429..34414456,34414764..34418243, 34418359..34418458)) /locus_tag="TCM_025746" /product="Leucine-rich repeat containing protein, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene05887" /inference="similar to AA sequence:ricco:30148.m001424" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.44 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc7t6; alternateUTRof:Thecc1EG025746t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14621t1; inference alignment:Newbler:10:TSA:cgbaP2_g01836t00002" CDS complement(join(34414449..34414456,34414764..34418226)) /locus_tag="TCM_025746" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30148.m001424" /codon_start=1 /product="Leucine-rich repeat containing protein, putative isoform 1" /protein_id="EOY10377.1" /translation="MADPVSIIVGPIVNNIIDTAASLIKGEFLAILNVEKEVKNLSSN LTAISAVLKDAEQRQLDAACGESLRDWLRKLKDVACDAEDILDTFATETFLWKRKKQV RKILAPTNLINKSSVAHKIKEISARLDVIAKQKNDFHLTESSDGGKTPNLPHTPFFVD ITADVFGRESDRDELINRMLSNESDTEGDVSVIPIVGMGGLGKTTLAQLIFKDERVKN HFEFKMWVHVTVDFNFGRILKEMIEFHTEMKYSSDVPTRTLESRFLEFLAGKSFLLVL DDVWTDDYQEWEPLQNLLKQGGKGSRVLVTTRNTRVSDIMGTQPPYRLECLPEDECWS LFKKIAFKDCNSLVDTHRKELEVFGRQIVEKCNGLPLAVKAMGGVLRGNIDVNKWKQI LRDSVWELEKDQNRTRPKILPALKLSYDHLPSYLKQCYAYCSIFPKAYVFDRKELVKL WMAEAFIQSSGQNSVEETGIEYFNELLMRSFFQILNIDDKVRYRMHDLIHDLAVSVSS PHCCQVKDNNSGIFSEETRHVSLLGQDVENPTLQIIERSTKLRTLLLPGESLKNLGQA LDKMFHSLKYIRVLNLSSSSFSELPSSIENLKLLRYLDLSRTEIKVLPNSICNLCNLQ TLKLLGCFWLFELPKDLGNLVNLRHLELDEMFWFKCEMLPPRMGNLTSLQNLHAFPVS GTSGHGIEELKNMAKLTKTLHILKLENAVNAAEAKLKEKESLQKLVLEWSGQDVNQED EIRAERDLEDLQPHSNLKELALHHFKGSNFPLWMTDGLLQNLVRLTLSHCTKCTTLSV GQLPCLRALYIKGMLELEEWPGVQCLSLDRLHIKNCPKLRKVPDLMPNLTVLKIKKCD SLKALPMAPLMFLVLIDNLVLEDWKEGMFIAQDDQGNQVGQPKPTLISLLELKMANCP NVQALPKIFAPQKLEISGCGLITALPVPQFAQRLQHLALDSCSNGTLVRAIPGTNTLY SLVISNISNLTSFPKLPHLPGLKTLYISDCKDLTSLSEDEESLKSLSSLKLLSIQGCS KLESLPDEGLPTGLECLMIVSCPILKSLGTKDTLKSLLSLKDLYLDDCPLIQSFPEDG LPTSLLHLVIHECPLLIEQCQKEDAGSTEWPKIMHVTDQEIDSIRLPSAPDLPKKNKW TPLFGFSKGP" CDS complement(join(34414449..34414456,34414764..34418226)) /locus_tag="TCM_025746" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30148.m001424" /codon_start=1 /product="Leucine-rich repeat containing protein, putative isoform 1" /protein_id="EOY10378.1" /translation="MADPVSIIVGPIVNNIIDTAASLIKGEFLAILNVEKEVKNLSSN LTAISAVLKDAEQRQLDAACGESLRDWLRKLKDVACDAEDILDTFATETFLWKRKKQV RKILAPTNLINKSSVAHKIKEISARLDVIAKQKNDFHLTESSDGGKTPNLPHTPFFVD ITADVFGRESDRDELINRMLSNESDTEGDVSVIPIVGMGGLGKTTLAQLIFKDERVKN HFEFKMWVHVTVDFNFGRILKEMIEFHTEMKYSSDVPTRTLESRFLEFLAGKSFLLVL DDVWTDDYQEWEPLQNLLKQGGKGSRVLVTTRNTRVSDIMGTQPPYRLECLPEDECWS LFKKIAFKDCNSLVDTHRKELEVFGRQIVEKCNGLPLAVKAMGGVLRGNIDVNKWKQI LRDSVWELEKDQNRTRPKILPALKLSYDHLPSYLKQCYAYCSIFPKAYVFDRKELVKL WMAEAFIQSSGQNSVEETGIEYFNELLMRSFFQILNIDDKVRYRMHDLIHDLAVSVSS PHCCQVKDNNSGIFSEETRHVSLLGQDVENPTLQIIERSTKLRTLLLPGESLKNLGQA LDKMFHSLKYIRVLNLSSSSFSELPSSIENLKLLRYLDLSRTEIKVLPNSICNLCNLQ TLKLLGCFWLFELPKDLGNLVNLRHLELDEMFWFKCEMLPPRMGNLTSLQNLHAFPVS GTSGHGIEELKNMAKLTKTLHILKLENAVNAAEAKLKEKESLQKLVLEWSGQDVNQED EIRAERDLEDLQPHSNLKELALHHFKGSNFPLWMTDGLLQNLVRLTLSHCTKCTTLSV GQLPCLRALYIKGMLELEEWPGVQCLSLDRLHIKNCPKLRKVPDLMPNLTVLKIKKCD SLKALPMAPLMFLVLIDNLVLEDWKEGMFIAQDDQGNQVGQPKPTLISLLELKMANCP NVQALPKIFAPQKLEISGCGLITALPVPQFAQRLQHLALDSCSNGTLVRAIPGTNTLY SLVISNISNLTSFPKLPHLPGLKTLYISDCKDLTSLSEDEESLKSLSSLKLLSIQGCS KLESLPDEGLPTGLECLMIVSCPILKSLGTKDTLKSLLSLKDLYLDDCPLIQSFPEDG LPTSLLHLVIHECPLLIEQCQKEDAGSTEWPKIMHVTDQEIDSIRLPSAPDLPKKNKW TPLFGFSKGP" CDS complement(join(34414449..34414456,34414764..34418226)) /locus_tag="TCM_025746" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30148.m001424" /codon_start=1 /product="Leucine-rich repeat containing protein, putative isoform 1" /protein_id="EOY10379.1" /translation="MADPVSIIVGPIVNNIIDTAASLIKGEFLAILNVEKEVKNLSSN LTAISAVLKDAEQRQLDAACGESLRDWLRKLKDVACDAEDILDTFATETFLWKRKKQV RKILAPTNLINKSSVAHKIKEISARLDVIAKQKNDFHLTESSDGGKTPNLPHTPFFVD ITADVFGRESDRDELINRMLSNESDTEGDVSVIPIVGMGGLGKTTLAQLIFKDERVKN HFEFKMWVHVTVDFNFGRILKEMIEFHTEMKYSSDVPTRTLESRFLEFLAGKSFLLVL DDVWTDDYQEWEPLQNLLKQGGKGSRVLVTTRNTRVSDIMGTQPPYRLECLPEDECWS LFKKIAFKDCNSLVDTHRKELEVFGRQIVEKCNGLPLAVKAMGGVLRGNIDVNKWKQI LRDSVWELEKDQNRTRPKILPALKLSYDHLPSYLKQCYAYCSIFPKAYVFDRKELVKL WMAEAFIQSSGQNSVEETGIEYFNELLMRSFFQILNIDDKVRYRMHDLIHDLAVSVSS PHCCQVKDNNSGIFSEETRHVSLLGQDVENPTLQIIERSTKLRTLLLPGESLKNLGQA LDKMFHSLKYIRVLNLSSSSFSELPSSIENLKLLRYLDLSRTEIKVLPNSICNLCNLQ TLKLLGCFWLFELPKDLGNLVNLRHLELDEMFWFKCEMLPPRMGNLTSLQNLHAFPVS GTSGHGIEELKNMAKLTKTLHILKLENAVNAAEAKLKEKESLQKLVLEWSGQDVNQED EIRAERDLEDLQPHSNLKELALHHFKGSNFPLWMTDGLLQNLVRLTLSHCTKCTTLSV GQLPCLRALYIKGMLELEEWPGVQCLSLDRLHIKNCPKLRKVPDLMPNLTVLKIKKCD SLKALPMAPLMFLVLIDNLVLEDWKEGMFIAQDDQGNQVGQPKPTLISLLELKMANCP NVQALPKIFAPQKLEISGCGLITALPVPQFAQRLQHLALDSCSNGTLVRAIPGTNTLY SLVISNISNLTSFPKLPHLPGLKTLYISDCKDLTSLSEDEESLKSLSSLKLLSIQGCS KLESLPDEGLPTGLECLMIVSCPILKSLGTKDTLKSLLSLKDLYLDDCPLIQSFPEDG LPTSLLHLVIHECPLLIEQCQKEDAGSTEWPKIMHVTDQEIDSIRLPSAPDLPKKNKW TPLFGFSKGP" mobile_element complement(34418990..34419156) /note="source:scaffold_9_CACTA_0942 5087 5359" /mobile_element_type="transposon:TIR/CACTA" gene 34419147..34420436 /locus_tag="TCM_025747" /note="dbxref CacaoGD:Thecc1EG025747" mRNA join(34419147..34419424,34419568..34419680, 34419775..34420436) /locus_tag="TCM_025747" /product="ATPP2-A2, putative" /inference="alignment:exonerate- protein:2:ricco:30148.m001425" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025750t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019353001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g01399t00001" CDS join(34419356..34419424,34419568..34419680, 34419775..34420153) /locus_tag="TCM_025747" /note="paralog of Thecc1EG025750t1" /codon_start=1 /product="ATPP2-A2, putative" /protein_id="EOY10380.1" /db_xref="Phytozome:GSVIVT01019353001" /db_xref="TAIR:AT4G19840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SDB6" /translation="MNFRKKRVVAAGNKEVFLEHKRKKTWEDASGHKCFMLYPRSLYI TWGGHDNWIWNSFKDTSDENIEVAKLSHICWLDVRGKFKLSDLSPGTLYEAVYLVKLT KGASGWELPIKLRLSLPNDRVQERQVSLLQKPRGQWIELNVGNFSTDENGETGETGEV CFDLYEHGGHWKNGLVIKCAILRPKN" gene 34421793..34423515 /locus_tag="TCM_025750" /note="dbxref CacaoGD:Thecc1EG025750" mRNA join(34421793..34422420,34422732..34422783, 34422925..34423040,34423134..34423515) /locus_tag="TCM_025750" /product="ATPP2-A2, putative" /inference="alignment:exonerate- protein:2:TAIR:AT4G19850.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025747t1" /inference="similar to AA sequence:Phytozome:GSVIVT01019353001" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.37 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc5914t1" mobile_element complement(34422034..34422077) /note="source:CACAO_LINE_E_69_scaffold_2 1228 1275" /mobile_element_type="retrotransposon:LINE/L1" mobile_element 34422296..34422677 /note="source:CACAO_M_S_E119852_F182_scaffold_9 1 383" /mobile_element_type="retrotransposon:LTR/Copia" CDS join(34422347..34422420,34422732..34422783, 34422925..34423040,34423134..34423491) /locus_tag="TCM_025750" /note="paralog of Thecc1EG025747t1" /codon_start=1 /product="ATPP2-A2, putative" /protein_id="EOY10381.1" /db_xref="Phytozome:GSVIVT01019353001" /db_xref="TAIR:AT4G19840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SDB6" /translation="MLKSSQVMKKQNNIFITIGCCLKLKKAVATDTNKVLPEHKRKKT WENAKSGHKCFVLYAWSLDICWSDHDYWIWDSFTETSDEEIEVAKLRTVCWLHVKGKF KISDLSPGTVYEVVYVVMLMKGASGWELPIKLKLSLPNGKVQERQVSLLRMPKGKWME VSLGYFCTEENGETRDVCYLISMKLGAIGKMDLLSRVPF" mobile_element complement(34423752..34424289) /note="source:INTACT36_F116_scaffold_6-int 3 544" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(34423815..34425762) /locus_tag="TCM_025751" /note="dbxref CacaoGD:Thecc1EG025751" mRNA complement(join(34423815..34424640,34424738..34425022, 34425462..34425762)) /locus_tag="TCM_025751" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.59 coverage" gene complement(34423818..34427844) /locus_tag="TCM_025752" /note="dbxref CacaoGD:Thecc1EG025752" mRNA complement(join(34423818..34424258,34426377..34426598, 34427159..34427783)) /locus_tag="TCM_025752" /product="Ribosomal protein L3 family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30148.m001406" /inference="similar to AA sequence:Phytozome:POPTR_0013s06710.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02365t00001; inference alignment:Newbler:10:TSA:cgbaB_g02365t00001" CDS complement(34424049..34424324) /locus_tag="TCM_025751" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10382.1" /translation="MSCQLYLIQLLLWIRSQLWKFKKQTWREGSEDEEGRGRKGVSST VTFFTSTADTPRLDVVLLKLVYCLCNTALAYVVFHVTLLKHYLSVSF" CDS complement(join(34424227..34424258,34426377..34426598, 34427159..34427696)) /locus_tag="TCM_025752" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Ribosomal protein L3 family protein isoform 2" /protein_id="EOY10384.1" /db_xref="Phytozome:POPTR_0013s06710.1" /db_xref="TAIR:AT2G43030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SKX4" /translation="MSIASLSLPSLGHCCQNSPPISLKSSFLSKPTTTQFSFAFKTTQ KRSFFHVVSMSMEAGVGVMGTKLGMMSYFETDGTVVPVTVVGFREGNIVTQVKTSATD GYDAVQVGYRRVRDKKLTKPELGHLEKGGVIPMRHLQEFRLQSVEAFEVGQKLAVEEI FKEGDLVDVSGTTIGKGFQGGIKRHNFKRGQMTHGSKSHRALGSIGAGTTPGRVYKGK KMPGRMGGSKRKIRKLKIVKLDNELRVVMIKGAVPEADLAGRFRG" mRNA complement(join(34424932..34425274,34426377..34426598, 34427159..34427844)) /locus_tag="TCM_025752" /product="Ribosomal protein L3 family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30148.m001406" /inference="similar to AA sequence:Phytozome:POPTR_0013s06710.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02365t00001" CDS complement(join(34425174..34425274,34426377..34426598, 34427159..34427696)) /locus_tag="TCM_025752" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Ribosomal protein L3 family protein isoform 1" /protein_id="EOY10383.1" /db_xref="Phytozome:POPTR_0013s06710.1" /db_xref="TAIR:AT2G43030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SKX4" /translation="MSIASLSLPSLGHCCQNSPPISLKSSFLSKPTTTQFSFAFKTTQ KRSFFHVVSMSMEAGVGVMGTKLGMMSYFETDGTVVPVTVVGFREGNIVTQVKTSATD GYDAVQVGYRRVRDKKLTKPELGHLEKGGVIPMRHLQEFRLQSVEAFEVGQKLAVEEI FKEGDLVDVSGTTIGKGFQGGIKRHNFKRGQMTHGSKSHRALGSIGAGTTPGRVYKGK KMPGRMGGSKRKIRKLKIVKLDNELRVVMIKGAVPDALAKEGILRPNDFWRRSMGAHK IWCVHDWLGV" mobile_element 34425555..34425635 /note="source:CACAO_M_S_E51240_F74_scaffold_4 2232 2307" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(34428171..34434800) /locus_tag="TCM_025753" /note="dbxref CacaoGD:Thecc1EG025753" mRNA complement(join(34428171..34428789,34428884..34428955, 34429614..34429718,34429812..34429910,34430012..34430095, 34430190..34430265,34430344..34430381,34430575..34430607, 34430847..34430893,34430981..34431038,34431187..34431259, 34431997..34432049,34432145..34432195,34432277..34432354, 34432438..34432498,34433028..34433118,34433265..34433368, 34433863..34434800)) /locus_tag="TCM_025753" /product="UTP--glucose-1-phosphate uridylyltransferase, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30148.m001405" /inference="similar to AA sequence:ricco:30148.m001405" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11725t00001" mRNA complement(join(34428194..34428503,34428884..34428955, 34429614..34429718,34429812..34429910,34430012..34430095, 34430190..34430265,34430344..34430381,34430575..34430607, 34430708..34430773,34430847..34430893,34430981..34431038, 34431187..34431259,34431997..34432049,34432145..34432195, 34432277..34432354,34432438..34432498,34433028..34433118, 34433265..34433368,34433863..34434669)) /locus_tag="TCM_025753" /product="UTP--glucose-1-phosphate uridylyltransferase, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30148.m001405" /inference="similar to AA sequence:ricco:30148.m001405" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9060t5; inference alignment:Newbler:10:TSA:cgbaL_g11725t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc473t8_C1" CDS complement(join(34428438..34428503,34428884..34428955, 34429614..34429718,34429812..34429910,34430012..34430095, 34430190..34430265,34430344..34430381,34430575..34430607, 34430708..34430773,34430847..34430893,34430981..34431038, 34431187..34431259,34431997..34432049,34432145..34432195, 34432277..34432354,34432438..34432498,34433028..34433118, 34433265..34433368,34433863..34434506)) /locus_tag="TCM_025753" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30148.m001405" /codon_start=1 /product="UTP--glucose-1-phosphate uridylyltransferase, putative isoform 2" /protein_id="EOY10386.1" /db_xref="TAIR:AT3G03250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I6E7" /translation="MTIHSVVIQKLLTTNSHISRQTVTHHFKQFTYGIRNKQAILDSD KTLICLRNALNFITCLSRDPSSSFLFINTNPLFQPIIDEMTLKVTTFNPERVSNLWKM RGFLTNSFSPKKFRSRNKKLVFGPTRLPDCVVVFDTERKSSILSEAQTLGIPIVGLVD SSTPLEFYKKVTYPIPANDSVQFVYLVCNMITKCLMLEKKKKEGEKRIGRKATSREEV KQIEESTGESKVESANEVLVIPYDNLAPLSGDIADMKQLLDKLVVVKFNGALGKNMGF NGPKSLIEVKNGSTSLDLTVNQIQSLNSKYGCNVPLLLINSRTTHDDVLKVLEKYSSS KIDIHSFRQGDQIQQELSFSEGGEDEWYSSDHGAQFLSLMSSGTLDVLLSQGKEYALV VNPDNVAAVVDPQILNHLAQNSVEYCMEVMPTTSGGLMNFMASSLQGKFKLEDFTSNP TKHSVKKFKFIDTRNLWVDLRAIKRLVDTNALKLGYLSMLKLFEKAIGIMIPQSRFLP LNSTSDLLLFQSDLYSFTEGVLIRNDARTTPTNPSIDLGPEFEKVSDFQSRFKTIPSI IRLDSLEVTGDVWFGADITLKGRVRIAADPGVKLEIPDGVVLKNEGKESSRGYGKTKL HVMYFSCL" CDS complement(join(34428763..34428789,34428884..34428955, 34429614..34429718,34429812..34429910,34430012..34430095, 34430190..34430265,34430344..34430381,34430575..34430607, 34430847..34430893,34430981..34431038,34431187..34431259, 34431997..34432049,34432145..34432195,34432277..34432354, 34432438..34432498,34433028..34433118,34433265..34433368, 34433863..34434506)) /locus_tag="TCM_025753" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30148.m001405" /codon_start=1 /product="UTP--glucose-1-phosphate uridylyltransferase, putative isoform 1" /protein_id="EOY10385.1" /db_xref="TAIR:AT3G03250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I6E7" /translation="MTIHSVVIQKLLTTNSHISRQTVTHHFKQFTYGIRNKQAILDSD KTLICLRNALNFITCLSRDPSSSFLFINTNPLFQPIIDEMTLKVTTFNPERVSNLWKM RGFLTNSFSPKKFRSRNKKLVFGPTRLPDCVVVFDTERKSSILSEAQTLGIPIVGLVD SSTPLEFYKKVTYPIPANDSVQFVYLVCNMITKCLMLEKKKKEGEKRIGRKATSREEV KQIEESTGESKVESANEVLVIPYDNLAPLSGDIADMKQLLDKLVVVKFNGALGKNMGF NGPKSLIEVKNGSTSLDLTVNQIQSLNSKYGCNVPLLLINSRTTHDDVLKVLEKYSSS KIDIHSFRQGDQIQQELSFSEGGEDEWYSSDHGAQFLSLMSSGTLDVLLSQGKEYALV VNPDNVAAVVDPQILNHLAQNSVEYCMELEDFTSNPTKHSVKKFKFIDTRNLWVDLRA IKRLVDTNALKLGYLSMLKLFEKAIGIMIPQSRFLPLNSTSDLLLFQSDLYSFTEGVL IRNDARTTPTNPSIDLGPEFEKVSDFQSRFKTIPSIIRLDSLEVTGDVWFGADITLKG RVRIAADPGVKLEIPDGVVLKNEEIKDPRDI" mobile_element complement(34432904..34432974) /note="source:CACAO_M_E34409_F73_scaffold_5 2260 2318" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 34435275..34436182 /locus_tag="TCM_025754" /note="dbxref CacaoGD:Thecc1EG025754" mRNA 34435275..34436182 /locus_tag="TCM_025754" /product="TATA-box-binding protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001402t1" /inference="similar to AA sequence:Phytozome:Sb01g012880.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS 34435470..34436057 /locus_tag="TCM_025754" /note="paralog of Thecc1EG001402t1" /codon_start=1 /product="TATA-box-binding protein" /protein_id="EOY10387.1" /db_xref="Phytozome:Sb01g012880.1" /db_xref="TAIR:AT1G55520.2" /db_xref="UniProtKB/TrEMBL:UniRef50_P29037" /translation="MAADRVLQSSHVSCSGVVPAIENVVSSVDLGCSLDLKAIALRAR NTEYNPERFAALMMRIRESRTTALIFSSGKMVCTGAETEQQSRLAARKYARIIQKLGF DVKFKDFQIQNIVASCDLPFSVNLTHLGNSHYESSVYEPELFPGLIYRMKQSKVMIKI FSSGKIVVAGTHDRKEIFKAFDNIYPILMSFRIDK" gene complement(34436303..34442210) /locus_tag="TCM_025755" /note="dbxref CacaoGD:Thecc1EG025755" mRNA complement(join(34436303..34436543,34436620..34436893, 34436974..34437034,34437161..34437228,34437312..34437521, 34437961..34438001,34438459..34438508,34438654..34438742, 34438844..34438918,34439735..34439829,34440110..34440170, 34440301..34440417,34440749..34441008,34441479..34442210)) /locus_tag="TCM_025755" /product="Seven transmembrane MLO family protein" /inference="alignment:exonerate- protein:2:ricco:30148.m001404" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036726t1" /inference="similar to AA sequence:TAIR:AT4G02600.2" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaL_g05089t00001" CDS complement(join(34436669..34436893,34436974..34437034, 34437161..34437228,34437312..34437521,34437961..34438001, 34438459..34438508,34438654..34438742,34438844..34438918, 34439735..34439829,34440110..34440170,34440301..34440417, 34440749..34441008,34441479..34441659)) /locus_tag="TCM_025755" /note="paralog of Thecc1EG036726t1" /codon_start=1 /product="Seven transmembrane MLO family protein" /protein_id="EOY10388.1" /db_xref="TAIR:AT4G02600.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O49621" /translation="MSEGGEGASLEFTPTWVLAAVCTVIVAISLAMERLLHYLGNILK KKQQKPLFEALLKVKEELMLLGFISLLLTVFQSAISKICISREAVTSMLPCKIEGNKE TAEHSNSTATTSHFQKYFAFTLSGGTRRLLAETSSASQMGYCGEKNKVPLLSVEALHH LHIFIFVLAIVHVTFCVLTVSFGGLRIRQWKHWEDSIAKENYDPEQMLKKKVTHVREH TFIKEHFLGIGKDSIVLGWLHSFFKQFYASVTKSDYVTLRLGFIMTHCRGNPKFNFHK YMIRALEDDFKQVVGISWYLWVFVVIFLLLNVNGWHTYFWIAFIPFILLLAVGTKLEH VIIQLAHEVAEKHVAIEGELVVQPSDDHFWFNKPRIVLFLIHFILFQNAFEIAFFFWI WVQFGFDSCIMGQIGYIIPRLVIGVFIQVLCSYSTLPLYAIVTQMGSSFKKAIFDEHV QAGLVGWAQKAKKKKGLRAATEAAAQEERPSVAIQMGRVLRNAAAPEEITPSHGSDHG SR" misc_feature complement(join(34438718..34438742,34438844..34439803)) /locus_tag="TCM_025755" /note="Gene fragment of Thecc1EG025755t1; dbxref gnl|CacaoGD|Thecc1EG025755t1; quality class is mediumpartial-partof is thecc1eg025755t1, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc431t10; dbxref CacaoGD:Thecc1EG025756t1" gene complement(34444688..34469094) /locus_tag="TCM_025757" /note="dbxref CacaoGD:Thecc1EG025757" mRNA complement(join(34444688..34445710,34445892..34445985, 34446076..34446233,34446339..34446457,34446722..34446934, 34447439..34447521,34447588..34447697,34449218..34449267, 34449363..34449626,34449726..34450058,34450646..34450714, 34450799..34451291,34452147..34452685,34453972..34454439, 34454523..34454642,34454760..34455200,34455283..34455708, 34458396..34458569,34458822..34459062,34460375..34460586, 34460913..34460981,34461094..34461226,34461402..34462011, 34462101..34462203,34463552..34463892,34465421..34465502, 34466702..34466756,34466933..34467150,34468372..34468466, 34468586..34469094)) /locus_tag="TCM_025757" /product="DNA binding,ATP binding,nucleic acid bindin isoform 1" /inference="alignment:exonerate-protein:2:frave:gene01565" /inference="similar to AA sequence:Phytozome:POPTR_0013s06470.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1051t8" mRNA complement(join(34445562..34446457,34446722..34446934, 34447439..34447521,34447588..34447697,34449218..34449267, 34449363..34449626,34449726..34450058,34450646..34450714, 34450799..34451291,34452147..34452685,34453972..34454439, 34454523..34454642,34454760..34455708,34458396..34458569, 34458822..34459062,34460375..34460586,34460913..34460981, 34461094..34461226,34461402..34462011,34462101..34462203, 34463552..34463892,34465421..34465502,34466702..34466756, 34466949..34467150,34468372..34468466,34468586..34469018)) /locus_tag="TCM_025757" /product="DNA binding,ATP binding,nucleic acid bindin isoform 2" /inference="alignment:exonerate-protein:2:frave:gene01565" /inference="alignment:exonerate- protein:2:Phytozome:Sb09g030650.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s06470.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1051t1; alternateUTRof:Thecc1EG025757t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1051t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9031t3" mRNA complement(join(34445562..34446457,34446722..34446934, 34447439..34447521,34447588..34447697,34449218..34449267, 34449363..34449626,34449726..34450058,34450646..34450714, 34450799..34451291,34452147..34452685,34453972..34454439, 34454523..34454642,34454760..34455708,34458396..34458569, 34458822..34459062,34460375..34460586,34460913..34460981, 34461094..34461226,34461402..34462011,34462101..34462203, 34463552..34463892,34465421..34465502,34466702..34466756, 34466933..34467150,34468372..34468466,34468586..34469018)) /locus_tag="TCM_025757" /product="DNA binding,ATP binding,nucleic acid bindin isoform 2" /inference="alignment:exonerate-protein:2:frave:gene01565" /inference="alignment:exonerate- protein:2:Phytozome:Sb09g030650.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s06470.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1051t10; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1051t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9031t3" CDS complement(join(34445668..34445710,34445892..34445985, 34446076..34446233,34446339..34446457,34446722..34446934, 34447439..34447521,34447588..34447697,34449218..34449267, 34449363..34449626,34449726..34450058,34450646..34450714, 34450799..34451291,34452147..34452685,34453972..34454439, 34454523..34454642,34454760..34455200,34455283..34455708, 34458396..34458569,34458822..34459062,34460375..34460586, 34460913..34460981,34461094..34461226,34461402..34462011, 34462101..34462203,34463552..34463892,34465421..34465502, 34466702..34466756,34466933..34467150,34468372..34468466, 34468586..34468637)) /locus_tag="TCM_025757" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="DNA binding,ATP binding,nucleic acid bindin isoform 1" /protein_id="EOY10389.1" /db_xref="Phytozome:POPTR_0013s06470.1" /db_xref="TAIR:AT3G54280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SD95" /translation="MAQQQSSRLNRLLTLLDTGSTQATRFTAARQIGDIAKSHPQDLN SLLKKVSQYLRSKNWDTRVAAAHAIGAIAQNVKHTSLADLLSSVGAKMTEAGISGTIE DMVASPDLHSKIVSGVSFRSFDINKVLEFGALMASGGQEYDIANDNSKNPKERLARQK QNLKRRLGLDMCEQFMDVSDMIRDEDLIVDKLHHHGNGLDNRFYTSPSIHNIRQFVSR MVPNVTSKRRPSARELNMLKRKAKINSKDQAKGWSDDGDTEVSPAHNASTPRGTCPDP VGSSKFDAVTDEDSSDHDGDGRWPFRSFVEQLIVDMFDPVWEIRHGSVMALREILTHH GASAGVYLPDLNSDDALYLEVKDLDYSSKMKREREIDLNMQVSPDELEVNLKRPKFED GSFPVMDKMISAGQHGGFNVAVKIEDAASTLLSGQFNGQHDISSMKIETEFCHDGMMY HSKEAVEVEEPKSYSEDKGAFANSDVLKILPENCELINLVKLARHSWLKNCEFLQDCA IRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGATFKYMHPSLVHETLNVLLQMQRRP EWEIRHGSLLGIKYLVAVRQEMLHNLLGRVLPACKAGLEDPDDDVRAVAADALIPTAA AIVALKGQSLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEDMMPKMLGTSTEK EKQNFDLNEVVHVDEVGEGKDLQENPYMLSMLAPRLWPFMRHSITSVRHSAICTLERL LEAGYKRSISEPAGSSFWPSFILGDTLRIVFQNLLLESNEEILQCSERVWRLLVQCPV GDLEVAAVSFVSSWIELATTSYGSVLDATKMFWPVAPPRKSHYRAAAKMKAVKLENES YGTVGLDSVRGAVSQEKNGDASTNLVKIIVGADAEMSVTNTRVITASALGIFASKLQA NSLQYVVDPLWSALTSLSGVQRQVASMVLISWFKELKSREPSGNQEIMQAFPDHLRKW LLDLLACSDPAFPTKDSVLPYAELSRTFAKMRNEASQLLHVVESSGMFVDILSTVKIN VESLTVDDAISFASKVPSLCNDNTGSESMQRNIDDIESAKQRLITTSGYLKCVQSNLH VTVSSLVAAAVVWMSELPARLNPIILPLMASIRREQEEILQQKAAEALAELIYHCIAR KPSPNDKLIKNICSLTCMDPSETPQAAVISTMEIIDDQDFLSFGTSTGKHKSKVHMLA GGEDRSRVEGFISRRGSELALRHLCEKFGPTLFEKLPKLWDCVTEVLIPASPADKQQV VHAVESIKDPQILINNIQVVRSIAPLLDETLKLKLLMLLPCIFKCVSHSHLAVRLAAS RCITTMAKSMTVDVMRAVIENAIPMLGDVTSVHARQGAGMLISLLVQGLGVELVPYAP LLVVPLLRCMSDCDHSVRQSVTRSFAALVPLLPLARGLPPPIGLSEGLSRNAEDAQFL EQLLDNSHIDDYKLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQAS AIVASDIAECHASNNIEESHSSLIVCPSTLVGHWAFEIEKYIDASLISTLQYVGSAQD RIALREQFDKHNVIITSYDVVRKDADYLGQFLWNYCILDEGHIIKNAKSKITLAVKQL KAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQFQATYGKPLLAARDPKCSAKD AEAGALAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSPVQLKLYEQFSGSH VKHEISSMVKHDESAVAGGNIASPKASTHVFQALQYLLKLCSHPLLVVGEKVPESLAL QLSELFSASSDIISELHKLHHSPKLVALQEILEECGIGVDTSASDGSVTVGQHRVLIF AQHKALLNIIEKDLFQTHMKNVTYLRLDGSVEPEKRFDIVKAFNSDPTIDALLLTTHV GGLGLNLTSADTLIFMEHDWNPMRDHQAMDRAHRLGQRKVVNVHRLIMRGTLEEKVMS LQRFKVSVANAVINSENASLKTMNTDQLLDLFASAETSKKGATASKRSESSIDGDPKL MGTGKGLKAILGGLEELWDQSQLYSWSTSGVLGSWCARARSSPVHIEANWLKPAARLY KVYIIQIKEPSFGKILVGWLGKMLFLEWLVPGLNMRVSNWSELTGREFSTEMEGQKFS GRN" CDS complement(join(34446287..34446457,34446722..34446934, 34447439..34447521,34447588..34447697,34449218..34449267, 34449363..34449626,34449726..34450058,34450646..34450714, 34450799..34451291,34452147..34452685,34453972..34454439, 34454523..34454642,34454760..34455269)) /locus_tag="TCM_025757" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="DNA binding,ATP binding,nucleic acid bindin isoform 2" /protein_id="EOY10390.1" /db_xref="Phytozome:POPTR_0013s06470.1" /db_xref="TAIR:AT3G54280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JCU6" /translation="MFNRKQGSVIFFILYQLVFPFYQVASMVLISWFKELKSREPSGN QEIMQAFPDHLRKWLLDLLACSDPAFPTKDSVLPYAELSRTFAKMRNEASQLLHVVES SGMFVDILSTVKINVESLTVDDAISFASKVPSLCNDNTGSESMQRNIDDIESAKQRLI TTSGYLKCVQSNLHVTVSSLVAAAVVWMSELPARLNPIILPLMASIRREQEEILQQKA AEALAELIYHCIARKPSPNDKLIKNICSLTCMDPSETPQAAVISTMEIIDDQDFLSFG TSTGKHKSKVHMLAGGEDRSRVEGFISRRGSELALRHLCEKFGPTLFEKLPKLWDCVT EVLIPASPADKQQVVHAVESIKDPQILINNIQVVRSIAPLLDETLKLKLLMLLPCIFK CVSHSHLAVRLAASRCITTMAKSMTVDVMRAVIENAIPMLGDVTSVHARQGAGMLISL LVQGLGVELVPYAPLLVVPLLRCMSDCDHSVRQSVTRSFAALVPLLPLARGLPPPIGL SEGLSRNAEDAQFLEQLLDNSHIDDYKLCTELKVTLRRYQQEGINWLAFLKRFKLHGI LCDDMGLGKTLQASAIVASDIAECHASNNIEESHSSLIVCPSTLVGHWAFEIEKYIDA SLISTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQFLWNYCILDEGHII KNAKSKITLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQFQATYGK PLLAARDPKCSAKDAEAGALAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLS PVQLKLYEQFSGSHVKHEISSMVKHDESAVAGGNIASPKASTHVFQALQYLLKLCSHP LLVVGEKVPESLALQLSELFSASSDIISELHKLHHSPKLVALQEILEECGIGVDTSAS DGSVTVGQHRVLIFAQHKALLNIIEKDLFQTHMKNVTYLRLDGSVEPEKRFDIVKAFN SDPTIDALLLTTHVGGLGLNLTSADTLIFMEHDWNPMRDHQAMDRAHRLGQRKVVNVH RLIMRGTLEEKVMSLQRFKVSVANAVINSENASLKTMNTDQLLDLFASAETSKKGATA SKRSESSIDGDPKLMGTGKGLKAILGGLEELWDQSQYAEEYNLSQFLTKLNG" CDS complement(join(34446287..34446457,34446722..34446934, 34447439..34447521,34447588..34447697,34449218..34449267, 34449363..34449626,34449726..34450058,34450646..34450714, 34450799..34451291,34452147..34452685,34453972..34454439, 34454523..34454642,34454760..34455269)) /locus_tag="TCM_025757" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="DNA binding,ATP binding,nucleic acid bindin isoform 2" /protein_id="EOY10391.1" /db_xref="Phytozome:POPTR_0013s06470.1" /db_xref="TAIR:AT3G54280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JCU6" /translation="MFNRKQGSVIFFILYQLVFPFYQVASMVLISWFKELKSREPSGN QEIMQAFPDHLRKWLLDLLACSDPAFPTKDSVLPYAELSRTFAKMRNEASQLLHVVES SGMFVDILSTVKINVESLTVDDAISFASKVPSLCNDNTGSESMQRNIDDIESAKQRLI TTSGYLKCVQSNLHVTVSSLVAAAVVWMSELPARLNPIILPLMASIRREQEEILQQKA AEALAELIYHCIARKPSPNDKLIKNICSLTCMDPSETPQAAVISTMEIIDDQDFLSFG TSTGKHKSKVHMLAGGEDRSRVEGFISRRGSELALRHLCEKFGPTLFEKLPKLWDCVT EVLIPASPADKQQVVHAVESIKDPQILINNIQVVRSIAPLLDETLKLKLLMLLPCIFK CVSHSHLAVRLAASRCITTMAKSMTVDVMRAVIENAIPMLGDVTSVHARQGAGMLISL LVQGLGVELVPYAPLLVVPLLRCMSDCDHSVRQSVTRSFAALVPLLPLARGLPPPIGL SEGLSRNAEDAQFLEQLLDNSHIDDYKLCTELKVTLRRYQQEGINWLAFLKRFKLHGI LCDDMGLGKTLQASAIVASDIAECHASNNIEESHSSLIVCPSTLVGHWAFEIEKYIDA SLISTLQYVGSAQDRIALREQFDKHNVIITSYDVVRKDADYLGQFLWNYCILDEGHII KNAKSKITLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQFQATYGK PLLAARDPKCSAKDAEAGALAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLS PVQLKLYEQFSGSHVKHEISSMVKHDESAVAGGNIASPKASTHVFQALQYLLKLCSHP LLVVGEKVPESLALQLSELFSASSDIISELHKLHHSPKLVALQEILEECGIGVDTSAS DGSVTVGQHRVLIFAQHKALLNIIEKDLFQTHMKNVTYLRLDGSVEPEKRFDIVKAFN SDPTIDALLLTTHVGGLGLNLTSADTLIFMEHDWNPMRDHQAMDRAHRLGQRKVVNVH RLIMRGTLEEKVMSLQRFKVSVANAVINSENASLKTMNTDQLLDLFASAETSKKGATA SKRSESSIDGDPKLMGTGKGLKAILGGLEELWDQSQYAEEYNLSQFLTKLNG" mRNA complement(join(34447181..34447697,34449218..34449267, 34449363..34449626,34449726..34450058,34450646..34450714, 34450799..34451291,34452147..34452685,34453972..34454439, 34454523..34454642,34454760..34455200,34455283..34455708, 34458396..34458569,34458822..34459062,34460375..34460586, 34460913..34460981,34461094..34461226,34461402..34462011, 34462101..34462203,34463552..34463892,34465421..34465502, 34466702..34466756,34466933..34467150,34468372..34468466, 34468586..34468808,34468847..34469008)) /locus_tag="TCM_025757" /product="TATA-binding protein-associated factor MOT1, putative isoform 4" /inference="alignment:exonerate-protein:2:frave:gene01565" /inference="alignment:exonerate- protein:2:Phytozome:Sb09g030650.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s06470.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1404t5; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1051t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9031t3" mRNA complement(join(34447181..34447521,34447588..34447697, 34449218..34449626,34449726..34450058,34450646..34450714, 34450799..34451291,34452147..34452685,34453972..34454439, 34454523..34454642,34454760..34455200,34455283..34455708, 34458396..34458569,34458822..34459062,34460375..34460586, 34460913..34460981,34461094..34461226,34461402..34462011, 34462101..34462203,34463552..34463892,34465421..34465502, 34466702..34466756,34466933..34467150,34468372..34468466, 34468586..34468808,34468847..34469008)) /locus_tag="TCM_025757" /product="DNA binding,ATP binding,nucleic acid bindin isoform 5" /inference="alignment:exonerate-protein:2:frave:gene01565" /inference="alignment:exonerate- protein:2:Phytozome:Sb09g030650.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s06470.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1404t8; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1051t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9031t3" CDS complement(join(34447562..34447697,34449218..34449267, 34449363..34449626,34449726..34450058,34450646..34450714, 34450799..34451291,34452147..34452685,34453972..34454439, 34454523..34454642,34454760..34455200,34455283..34455708, 34458396..34458569,34458822..34459062,34460375..34460586, 34460913..34460981,34461094..34461226,34461402..34462011, 34462101..34462203,34463552..34463892,34465421..34465502, 34466702..34466756,34466933..34467150,34468372..34468466, 34468586..34468637)) /locus_tag="TCM_025757" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="TATA-binding protein-associated factor MOT1, putative isoform 4" /protein_id="EOY10392.1" /db_xref="Phytozome:POPTR_0013s06470.1" /db_xref="TAIR:AT3G54280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SD95" /translation="MAQQQSSRLNRLLTLLDTGSTQATRFTAARQIGDIAKSHPQDLN SLLKKVSQYLRSKNWDTRVAAAHAIGAIAQNVKHTSLADLLSSVGAKMTEAGISGTIE DMVASPDLHSKIVSGVSFRSFDINKVLEFGALMASGGQEYDIANDNSKNPKERLARQK QNLKRRLGLDMCEQFMDVSDMIRDEDLIVDKLHHHGNGLDNRFYTSPSIHNIRQFVSR MVPNVTSKRRPSARELNMLKRKAKINSKDQAKGWSDDGDTEVSPAHNASTPRGTCPDP VGSSKFDAVTDEDSSDHDGDGRWPFRSFVEQLIVDMFDPVWEIRHGSVMALREILTHH GASAGVYLPDLNSDDALYLEVKDLDYSSKMKREREIDLNMQVSPDELEVNLKRPKFED GSFPVMDKMISAGQHGGFNVAVKIEDAASTLLSGQFNGQHDISSMKIETEFCHDGMMY HSKEAVEVEEPKSYSEDKGAFANSDVLKILPENCELINLVKLARHSWLKNCEFLQDCA IRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGATFKYMHPSLVHETLNVLLQMQRRP EWEIRHGSLLGIKYLVAVRQEMLHNLLGRVLPACKAGLEDPDDDVRAVAADALIPTAA AIVALKGQSLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEDMMPKMLGTSTEK EKQNFDLNEVVHVDEVGEGKDLQENPYMLSMLAPRLWPFMRHSITSVRHSAICTLERL LEAGYKRSISEPAGSSFWPSFILGDTLRIVFQNLLLESNEEILQCSERVWRLLVQCPV GDLEVAAVSFVSSWIELATTSYGSVLDATKMFWPVAPPRKSHYRAAAKMKAVKLENES YGTVGLDSVRGAVSQEKNGDASTNLVKIIVGADAEMSVTNTRVITASALGIFASKLQA NSLQYVVDPLWSALTSLSGVQRQVASMVLISWFKELKSREPSGNQEIMQAFPDHLRKW LLDLLACSDPAFPTKDSVLPYAELSRTFAKMRNEASQLLHVVESSGMFVDILSTVKIN VESLTVDDAISFASKVPSLCNDNTGSESMQRNIDDIESAKQRLITTSGYLKCVQSNLH VTVSSLVAAAVVWMSELPARLNPIILPLMASIRREQEEILQQKAAEALAELIYHCIAR KPSPNDKLIKNICSLTCMDPSETPQAAVISTMEIIDDQDFLSFGTSTGKHKSKVHMLA GGEDRSRVEGFISRRGSELALRHLCEKFGPTLFEKLPKLWDCVTEVLIPASPADKQQV VHAVESIKDPQILINNIQVVRSIAPLLDETLKLKLLMLLPCIFKCVSHSHLAVRLAAS RCITTMAKSMTVDVMRAVIENAIPMLGDVTSVHARQGAGMLISLLVQGLGVELVPYAP LLVVPLLRCMSDCDHSVRQSVTRSFAALVPLLPLARGLPPPIGLSEGLSRNAEDAQFL EQLLDNSHIDDYKLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQAS AIVASDIAECHASNNIEESHSSLIVCPSTLVGHWAFEIEKYIDASLISTLQYVGSAQD RIALREQFDKHNVIITSYDVVRKDADYLGQFLWNYCILDEGHIIKNAKSKITLAVKQL KAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQFQATYGKPLLAARDPKCSAKD AEAGALAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSPVQLKLYEQFSGSH VKHEISSMVKHDESAVAGGNIASPKASTHVFQALQYLLKLCSHPLLVVGEKVPESLAL QLSELFSASSDIISELHKLHHSPKLVALQEILEECGIGVDTSASDGSVTVGQHRVLIF AQHKALLNIIEKDLFQTHMKNVTYLRLDGSVEPEKRFDIVKAFNSDPTIDALLLTTHG KTFLVAE" CDS complement(join(34449258..34449626,34449726..34450058, 34450646..34450714,34450799..34451291,34452147..34452685, 34453972..34454439,34454523..34454642,34454760..34455200, 34455283..34455708,34458396..34458569,34458822..34459062, 34460375..34460586,34460913..34460981,34461094..34461226, 34461402..34462011,34462101..34462203,34463552..34463892, 34465421..34465502,34466702..34466756,34466933..34467150, 34468372..34468466,34468586..34468637)) /locus_tag="TCM_025757" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="DNA binding,ATP binding,nucleic acid bindin isoform 5" /protein_id="EOY10393.1" /db_xref="Phytozome:POPTR_0013s06470.1" /db_xref="TAIR:AT3G54280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SD95" /translation="MAQQQSSRLNRLLTLLDTGSTQATRFTAARQIGDIAKSHPQDLN SLLKKVSQYLRSKNWDTRVAAAHAIGAIAQNVKHTSLADLLSSVGAKMTEAGISGTIE DMVASPDLHSKIVSGVSFRSFDINKVLEFGALMASGGQEYDIANDNSKNPKERLARQK QNLKRRLGLDMCEQFMDVSDMIRDEDLIVDKLHHHGNGLDNRFYTSPSIHNIRQFVSR MVPNVTSKRRPSARELNMLKRKAKINSKDQAKGWSDDGDTEVSPAHNASTPRGTCPDP VGSSKFDAVTDEDSSDHDGDGRWPFRSFVEQLIVDMFDPVWEIRHGSVMALREILTHH GASAGVYLPDLNSDDALYLEVKDLDYSSKMKREREIDLNMQVSPDELEVNLKRPKFED GSFPVMDKMISAGQHGGFNVAVKIEDAASTLLSGQFNGQHDISSMKIETEFCHDGMMY HSKEAVEVEEPKSYSEDKGAFANSDVLKILPENCELINLVKLARHSWLKNCEFLQDCA IRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGATFKYMHPSLVHETLNVLLQMQRRP EWEIRHGSLLGIKYLVAVRQEMLHNLLGRVLPACKAGLEDPDDDVRAVAADALIPTAA AIVALKGQSLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEDMMPKMLGTSTEK EKQNFDLNEVVHVDEVGEGKDLQENPYMLSMLAPRLWPFMRHSITSVRHSAICTLERL LEAGYKRSISEPAGSSFWPSFILGDTLRIVFQNLLLESNEEILQCSERVWRLLVQCPV GDLEVAAVSFVSSWIELATTSYGSVLDATKMFWPVAPPRKSHYRAAAKMKAVKLENES YGTVGLDSVRGAVSQEKNGDASTNLVKIIVGADAEMSVTNTRVITASALGIFASKLQA NSLQYVVDPLWSALTSLSGVQRQVASMVLISWFKELKSREPSGNQEIMQAFPDHLRKW LLDLLACSDPAFPTKDSVLPYAELSRTFAKMRNEASQLLHVVESSGMFVDILSTVKIN VESLTVDDAISFASKVPSLCNDNTGSESMQRNIDDIESAKQRLITTSGYLKCVQSNLH VTVSSLVAAAVVWMSELPARLNPIILPLMASIRREQEEILQQKAAEALAELIYHCIAR KPSPNDKLIKNICSLTCMDPSETPQAAVISTMEIIDDQDFLSFGTSTGKHKSKVHMLA GGEDRSRVEGFISRRGSELALRHLCEKFGPTLFEKLPKLWDCVTEVLIPASPADKQQV VHAVESIKDPQILINNIQVVRSIAPLLDETLKLKLLMLLPCIFKCVSHSHLAVRLAAS RCITTMAKSMTVDVMRAVIENAIPMLGDVTSVHARQGAGMLISLLVQGLGVELVPYAP LLVVPLLRCMSDCDHSVRQSVTRSFAALVPLLPLARGLPPPIGLSEGLSRNAEDAQFL EQLLDNSHIDDYKLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQAS AIVASDIAECHASNNIEESHSSLIVCPSTLVGHWAFEIEKYIDASLISTLQYVGSAQD RIALREQFDKHNVIITSYDVVRKDADYLGQFLWNYCILDEGHIIKNAKSKITLAVKQL KAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQFQATYGKPLLAARDPKCSAKD AEAGALAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSPVQLKLYEQFSGSH VKHEISSMVKHDESAVAGGNIASPKASTHVFQALQYLLKLCSHPLLVVGEKVPESLAL QLSELFSASSDIISELHKLHHSPKLVALQEILEECGIGVDTSASDGSVTVGQHRVLIF AQHKVMTTYLSGPLLDNLSLYVSFQNYHFKIGFQCRPY" mobile_element 34464958..34465040 /note="source:scaffold_6_CACTA_0699 7076 7164" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(34469775..34470120) /note="source:scaffold_1_CACTA_0008 14080 14403" /mobile_element_type="transposon:TIR/CACTA" gene 34470669..34476184 /locus_tag="TCM_025759" /note="dbxref CacaoGD:Thecc1EG025759" mRNA join(34470669..34470781,34470992..34471061, 34471823..34471954,34473433..34473609,34474108..34474206, 34474305..34474547,34475265..34476184) /locus_tag="TCM_025759" /product="Sec14p-like phosphatidylinositol transfer family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s06500.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034950t4" /inference="similar to AA sequence:Phytozome:POPTR_0013s06500.4" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:PASA:2:TSA:puevd3b024910t1a2; alternateUTRof:Thecc1EG025759t1; inference alignment:Newbler:10:TSA:cgbaP2_g07072t00001" mRNA join(34470669..34470781,34470992..34471061, 34471823..34471954,34473433..34473609,34474108..34474206, 34474305..34474422,34475269..34476184) /locus_tag="TCM_025759" /product="Sec14p-like phosphatidylinositol transfer family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s06500.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034950t4" /inference="similar to AA sequence:Phytozome:POPTR_0013s06500.4" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:PASA:2:TSA:puevd3b024910t1a3; inference alignment:Newbler:10:TSA:cgbaP2_g07072t00001" mRNA join(34470766..34470781,34470992..34471061, 34471839..34471954,34473433..34473609,34474108..34474206, 34474305..34474547,34475265..34475945) /locus_tag="TCM_025759" /product="Sec14p-like phosphatidylinositol transfer family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s06500.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034950t4" /inference="similar to AA sequence:Phytozome:POPTR_0013s06500.4" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g07072t00001; inference alignment:Newbler:10:TSA:cgbaP2_g07072t00001" CDS join(34471886..34471954,34473433..34473609, 34474108..34474206,34474305..34474547,34475265..34475705) /locus_tag="TCM_025759" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG034950t4" /codon_start=1 /product="Sec14p-like phosphatidylinositol transfer family protein isoform 1" /protein_id="EOY10394.1" /db_xref="Phytozome:POPTR_0013s06500.4" /db_xref="TAIR:AT1G22180.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I6D6" /translation="MSLHQLKGSAKDKSLLPEEQQAKIDDVRKLIGPIADKLPVLCSD ASISRYLRARNWSTKKASKMLKETLKWRLQYKPEKIRWEDIAHEAETGKIYRANYCDK LGRPVLVMRPGFQNTNSTSGQIKYLVYCMENAIMNLTQDQEQMVWLVDFQRWGMSSIS VKVTRETAHILQNHYPERLGLGILYNPPKIFESFWTIVKPFLEPKTYKKVKFVYSDDP KSQKIIEEVFDLDKLDVAFGGRNTAGFDYQAYAQQMKEDDIKKSNVLDSSCTSPPYPS SVLSKSHQLESLDLDHYSNASDKVGLLSGDEATPSNLEHIDEKTRKLSLGCKDVAVGE AAIAKQVQ" CDS join(34471886..34471954,34473433..34473609, 34474108..34474206,34474305..34474547,34475265..34475705) /locus_tag="TCM_025759" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG034950t4" /codon_start=1 /product="Sec14p-like phosphatidylinositol transfer family protein isoform 1" /protein_id="EOY10395.1" /db_xref="Phytozome:POPTR_0013s06500.4" /db_xref="TAIR:AT1G22180.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I6D6" /translation="MSLHQLKGSAKDKSLLPEEQQAKIDDVRKLIGPIADKLPVLCSD ASISRYLRARNWSTKKASKMLKETLKWRLQYKPEKIRWEDIAHEAETGKIYRANYCDK LGRPVLVMRPGFQNTNSTSGQIKYLVYCMENAIMNLTQDQEQMVWLVDFQRWGMSSIS VKVTRETAHILQNHYPERLGLGILYNPPKIFESFWTIVKPFLEPKTYKKVKFVYSDDP KSQKIIEEVFDLDKLDVAFGGRNTAGFDYQAYAQQMKEDDIKKSNVLDSSCTSPPYPS SVLSKSHQLESLDLDHYSNASDKVGLLSGDEATPSNLEHIDEKTRKLSLGCKDVAVGE AAIAKQVQ" CDS join(34471886..34471954,34473433..34473609, 34474108..34474206,34474305..34474422,34475269..34475705) /locus_tag="TCM_025759" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG034950t4" /codon_start=1 /product="Sec14p-like phosphatidylinositol transfer family protein isoform 3" /protein_id="EOY10396.1" /db_xref="Phytozome:POPTR_0013s06500.4" /db_xref="TAIR:AT1G22180.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I6D6" /translation="MSLHQLKGSAKDKSLLPEEQQAKIDDVRKLIGPIADKLPVLCSD ASISRYLRARNWSTKKASKMLKETLKWRLQYKPEKIRWEDIAHEAETGKIYRANYCDK LGRPVLVMRPGFQNTNSTSGQIKYLVYCMENAIMNLTQDQEQMVWLVDFQRWVKPFLE PKTYKKVKFVYSDDPKSQKIIEEVFDLDKLDVAFGGRNTAGFDYQAYAQQMKEDDIKK SNVLDSSCTSPPYPSSVLSKSHQLESLDLDHYSNASDKVGLLSGDEATPSNLEHIDEK TRKLSLGCKDVAVGEAAIAKQVQ" mobile_element complement(34477665..34478034) /note="source:scaffold_1_CACTA_0008 14049 14414" /mobile_element_type="transposon:TIR/CACTA" mobile_element 34477808..34478069 /note="source:scaffold_3_CACTA_0377 4999 5274" /mobile_element_type="transposon:TIR/CACTA" gene 34477869..34485453 /locus_tag="TCM_025760" /note="dbxref CacaoGD:Thecc1EG025760" mRNA join(34477869..34478015,34478558..34479095, 34479259..34482794,34483539..34485453) /locus_tag="TCM_025760" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s06510.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s06510.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1127t1" CDS join(34479459..34482794,34483539..34484474) /locus_tag="TCM_025760" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10397.1" /db_xref="Phytozome:POPTR_0013s06510.1" /db_xref="TAIR:AT5G17910.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9AV94" /translation="MGLERLEFGVIVRKLMVKSVKTCYRSVWNHPFLVGLVCFLIFLY RSFPLLFSVLVTASPVLVCTAVLLGTLLSFGSPNIPEIDEKEEEEKVSHEVSSLKTKV TEDDTVVERDVGDDHFVVERHVGKRWDIVENADEKVSLVDNEVSEVEEDDGSVRYKPL VDEDLDSRDIHCENGVVDEVEGTMNDTLVKKKREIQEEILGSEGVLSAGKAAEDGHLL ADEVGDRNLNVANGKLAADFSDILRGDELDASLVSSWKRVGDDEDGDDRDDDDDESMD SGSDGAESSSPDASMADIIPMLDELHPLLGSEAPQPAQMSHDGSDAASESSHGSSNDE SVESDESENQGEEDNDDEEEEEEDEDEEEGAKGDKEDESKSAIKWTEDDQKNLMDLGT SELERNQRLENLIARRKARKNMRLMAEKNLIDLDSADIPLNIAPISTTRRNPFDLPYD AHDDLGLPPIPGSAPSILQPRRNPFDLPYDSSEEKPDLKGDSFQEEFSGFNQRETVSQ REAFFRRHESFNVGPSSLGVPRQELKWKPYFVPERLVTEGASPSSFQRQSSEVSESKL SSVPDTESVSSIVDEEDNKPNEQDVSQETELILNGDHASVRDEQESQSSADVDEAEDR DVHHDVVEITLGDGESQLEMESSLSEAGATTNVELNANEIYPRTEPVEEDHSSRASLS SLSEIDEKISDVKREGSAGFELTDHDIKESGISTQPSFEESELHFTSRVVDDIQHREP VYDSSPSSVEKLLSFVSVSSDTQAEISEIGSPSMLVEPTDKELEGHGETTERGASSFE EMHAASSNLLIENEPRSRDLPEISEHDVTHAGSSGVSSASADHNVSMVAEPVVEVEHV STGAGSSSLDEGLLEDVLVKEESFNQNQVELSSLGAETTLGVDQGINEVLDSSPEEQL HPMHPYESSEAEPVDHHAVDKEDTQLEQDEIHSSSSSEDNLVEGTVMPKEEINQTECD QMYSSNADASLDVDGDHDKGEELSSSALSCQHMPSNDVSSSTPEESSGHEVVAPVVHS SEADVIEEDKKDPEMDQVQSLCSGSKIDTGLDLDMDVEEIPSGSSYQDVPSRENSSPE AEKQLSWSDKSSDEPPIDVHDKLEEQSIFATESRGGVDIVNDDVNVHEVHDSKDILST NFSSITSEPTSFPVESPEHTLPINREDLKYKILNEIESEGPKEASEHFNYAAEVYATH VDDENISEEVDEIKEIDEGILSELDTVGDFNVKEIGLPELSHVGYGESAMLPEDIKTE TNVELPVLEARSVEDIDLAFKQLHDGVDVVKVILPSMIDNQQDPADTNSKLPVVDARS LEDIHSALQQVPESNPTELPHSLDLGNGSSEVEGHDVVSTKEIEFSNVVSGIQESSDS AAGEAKNEYEEASEKSSLSISDHKGKKAKSHDSSSSSSSSSSDSE" gene complement(34486102..34490685) /locus_tag="TCM_025761" /note="dbxref CacaoGD:Thecc1EG025761" mRNA complement(join(34486102..34486443,34486749..34486868, 34487924..34488013,34488710..34488943,34489584..34489754, 34490334..34490685)) /locus_tag="TCM_025761" /product="Far1-related sequence 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029897001" /inference="similar to AA sequence:ricco:29818.m000408" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g09732t00001" CDS complement(join(34486399..34486443,34486749..34486868, 34487924..34488013,34488710..34488943,34489584..34489754, 34490334..34490510)) /locus_tag="TCM_025761" /note="dbxref ricco:29818.m000408" /codon_start=1 /product="Far1-related sequence 3" /protein_id="EOY10398.1" /db_xref="TAIR:AT2G27110.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HMU9" /translation="MAEDTLYLQLHKLSAVNSDEILDQILTTLWKTRRSGLRPPDKSR IQSFLSLPSLPELDPVLACLRSLIRKCVHENFNGDDLLKLFPPDLPLDLQSTLILLFQ KYQSQWKEEISKEQHPLQRTSLSYQVKASAPSSFAPLSSSDIPTSLWPRQDDPITRIN LSDFGASTPIIADAAGSNVAPLSIQQDDGPPDNLEVLPRLKSMTWTMENLNSAPANRV AIIHLKLQDYTKSASGEMEVKFQLTKDTLEAILRSMTYISEQLSRMAEPSLEPTQKKP KQ" mobile_element 34490697..34490964 /note="source:CACAO_MITE_S250_scaffold_10 43 320" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(34490941..34491109) /note="source:scaffold_2_CACTA_0277 4703 4892" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(34490966..34491304) /note="source:CACAO_on_E576_scaffold_5 42 401" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 34491259..34491361 /note="source:CACAO_PIF_E31_scaffold_2 4055 4159" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(34491277..34491431) /note="source:CACAO_MITE_S163_scaffold_6 296 412" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(34491359..34491443) /note="source:CACAO_Mariner_E220_scaffold_9 9947 10034" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 34491432..34492055 /note="source:CACAO_MITE_S250_scaffold_10 318 945" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(34492100..34492206) /note="source:CACAO_M_S_E52027_F3_scaffold_5 3875 3986" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34492131..34492220 /note="source:CACAO_M_S_E52027_F3_scaffold_5 3840 3920" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(34492152..34492227) /note="source:scaffold_6_CACTA_0706 1416 1471" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(34492381..34492440) /note="source:CACAO_M_E73089_F74_scaffold_10 3467 3523" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 34496389..34506829 /locus_tag="TCM_025762" /note="dbxref CacaoGD:Thecc1EG025762" mRNA join(34496389..34496464,34498720..34498826, 34500700..34500947,34502054..34502221,34502380..34502536, 34504239..34504378,34504474..34504509,34505314..34506829) /locus_tag="TCM_025762" /product="ENTH/VHS family protein" /inference="alignment:exonerate- protein:2:ricco:29818.m000407" /inference="similar to AA sequence:ricco:29818.m000407" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04524t00001" CDS join(34498748..34498826,34500700..34500947, 34502054..34502221,34502380..34502536,34504239..34504378, 34504474..34504509,34505314..34506204) /locus_tag="TCM_025762" /note="dbxref ricco:29818.m000407" /codon_start=1 /product="ENTH/VHS family protein" /protein_id="EOY10399.1" /db_xref="TAIR:AT5G65180.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SY93" /translation="MSSDTFDGQILTEKLSKLNNSQQSIESLSRWCITHRKKAKQIVE TWDKLFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPGALKHVYENGDEYG KKAVTRLVDIWEERKVFGSRGQNLKDEMLGKNPPPPPPPLSVNNGKSSNPIKIVKRDA HAVRIKLAVGGLPEKILTAYQSVLEDNQNEDIALNKCNAAVQQLHKIGEDVESSLAQG NQNESALLDELQQQEIALQQCIEQLENVETIRATLIFQLKEALQEQESKLELIHSQLQ VARGQIEQASNVRKRLTLPTVPGHLSATTISTAEGAIVVEQNLPSAQPTGTPPHPHHA QPVLSFAPSMTTEEDNKKAAAAAVAAKLAASTSSAQMLTSVLSSLVAEEAASMNGSLK SGGFTSGLSMFPPEKRPKLEKPMPVSDASNSDVSSTAYFSPLQQQAMTNMPLAPSTSV QPMSQGNQIQAPFASAPPPPPPPLSPANPPASQYVQSTGMMVGVMPYGYGANTLPPPP PLPPHIAMSLARPSSQPLQQLQSQSLQQPQSQPQQQPATGGFYRPPGIGFYGQNPQST PPVPRQ" gene 34507129..34513303 /locus_tag="TCM_025763" /note="dbxref CacaoGD:Thecc1EG025763" mRNA join(34507129..34507454,34507924..34508104, 34508199..34508301,34509164..34509276,34510173..34510241, 34510388..34510503,34510599..34510653,34510847..34510967, 34511207..34511349,34511470..34511668) /locus_tag="TCM_025763" /product="ELMO/CED-12 family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029902001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008059t2" /inference="similar to AA sequence:Phytozome:GSVIVT01029902001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09566t00001" mRNA join(34507317..34507454,34507924..34508104, 34508199..34508301,34509164..34509276,34510173..34510241, 34510388..34510503,34510599..34510653,34510847..34510967, 34511207..34511496) /locus_tag="TCM_025763" /product="ELMO/CED-12 family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029902001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008059t2" /inference="similar to AA sequence:Phytozome:GSVIVT01029902001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc820t4; inference alignment:Newbler:10:TSA:cgbaB_g09566t00001" mRNA join(34507829..34508104,34508199..34508301, 34509164..34509276,34510173..34510241,34510388..34510503, 34510599..34510653,34510847..34510967,34511207..34511349, 34511470..34512019,34513215..34513303) /locus_tag="TCM_025763" /product="ELMO/CED-12 family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029902001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008059t2" /inference="similar to AA sequence:Phytozome:GSVIVT01029902001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc822t7; alternateUTRof:Thecc1EG025763t1; inference alignment:Newbler:10:TSA:cgbaB_g09566t00001" CDS join(34507964..34508104,34508199..34508301, 34509164..34509276,34510173..34510241,34510388..34510503, 34510599..34510653,34510847..34510967,34511207..34511349, 34511470..34511571) /locus_tag="TCM_025763" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG008059t2" /codon_start=1 /product="ELMO/CED-12 family protein isoform 1" /protein_id="EOY10400.1" /db_xref="Phytozome:GSVIVT01029902001" /db_xref="TAIR:AT3G03610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VXW7" /translation="MRSGALRRRLHHGDVDGRRNENYETSGLDGLDEPLLGNQDYNER HSEGQKLEEIWDEEQRKEHLHWAFLFSNLIAQWAQWIANVVLGSGSFIAQLLHLPSNI QNGPSQKLLLPALSPLQEERLRNLQQRLGVPFDGSRLEHQDALKQLWRLAYPNRELPS LKSELWKDMGWQGPDPSTDFRGGGFISLENLIFFAKQYPESFQRLLHKQDGARADWEY PFAVAGINISFMLVQMLELQSGKPSSVAGIRFLELLGEDEMAFDNLYCVAFQMMDAQW LVKRASYMQFNDVLKSTRTQLERELALEDVSSVKDLPAYNLLRR" CDS join(34507964..34508104,34508199..34508301, 34509164..34509276,34510173..34510241,34510388..34510503, 34510599..34510653,34510847..34510967,34511207..34511349, 34511470..34511571) /locus_tag="TCM_025763" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG008059t2" /codon_start=1 /product="ELMO/CED-12 family protein isoform 1" /protein_id="EOY10401.1" /db_xref="Phytozome:GSVIVT01029902001" /db_xref="TAIR:AT3G03610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VXW7" /translation="MRSGALRRRLHHGDVDGRRNENYETSGLDGLDEPLLGNQDYNER HSEGQKLEEIWDEEQRKEHLHWAFLFSNLIAQWAQWIANVVLGSGSFIAQLLHLPSNI QNGPSQKLLLPALSPLQEERLRNLQQRLGVPFDGSRLEHQDALKQLWRLAYPNRELPS LKSELWKDMGWQGPDPSTDFRGGGFISLENLIFFAKQYPESFQRLLHKQDGARADWEY PFAVAGINISFMLVQMLELQSGKPSSVAGIRFLELLGEDEMAFDNLYCVAFQMMDAQW LVKRASYMQFNDVLKSTRTQLERELALEDVSSVKDLPAYNLLRR" CDS join(34507964..34508104,34508199..34508301, 34509164..34509276,34510173..34510241,34510388..34510503, 34510599..34510653,34510847..34510967,34511207..34511370) /locus_tag="TCM_025763" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG008059t2" /codon_start=1 /product="ELMO/CED-12 family protein isoform 3" /protein_id="EOY10402.1" /db_xref="Phytozome:GSVIVT01029902001" /db_xref="TAIR:AT3G03610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VXW7" /translation="MRSGALRRRLHHGDVDGRRNENYETSGLDGLDEPLLGNQDYNER HSEGQKLEEIWDEEQRKEHLHWAFLFSNLIAQWAQWIANVVLGSGSFIAQLLHLPSNI QNGPSQKLLLPALSPLQEERLRNLQQRLGVPFDGSRLEHQDALKQLWRLAYPNRELPS LKSELWKDMGWQGPDPSTDFRGGGFISLENLIFFAKQYPESFQRLLHKQDGARADWEY PFAVAGINISFMLVQMLELQSGKPSSVAGIRFLELLGEDEMAFDNLYCVAFQMMDAQW LVKRASYMQFNVNYSNK" mobile_element complement(34509630..34509753) /note="source:scaffold_6_CACTA_0714 13421 13541" /mobile_element_type="transposon:TIR/CACTA" gene complement(34511325..34514317) /locus_tag="TCM_025764" /note="dbxref CacaoGD:Thecc1EG025764" mRNA complement(join(34511325..34512006,34512252..34512338, 34512496..34512614,34512698..34512936,34513064..34513120, 34513212..34513298,34513397..34513938,34514044..34514317)) /locus_tag="TCM_025764" /product="Multidrug resistance pump, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s13550.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025766t1" /inference="similar to AA sequence:ricco:29818.m000404" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc822t9" CDS complement(join(34511914..34512006,34512252..34512338, 34512496..34512614,34512698..34512936,34513064..34513120, 34513212..34513298,34513397..34513938,34514044..34514277)) /locus_tag="TCM_025764" /note="dbxref ricco:29818.m000404; paralog of Thecc1EG025766t1" /codon_start=1 /product="Multidrug resistance pump, putative" /protein_id="EOY10403.1" /db_xref="TAIR:AT3G03620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SY90" /translation="MDESLLGSETNTSGELKGRVWLESRKLWRIAFPAMVTKLTSFGM FVITQAFIGHLSNVELAAYSLIQIITVRFAYGILLGMSSAPETLCGQAFGAKQCHMMG IYLQRSWIINLGAQTVMLPIFIFASPLLKLLGEEEDVANQAGYISVWFIPVLYAFLFN ITIQKYLQAQLKNMIIGWLSAISLVLHVLLSWIFVTKLNWGIPGAMSSMIIANWFVVI GEFAYIFCGWCPDTWKGFTLACFTDLFPVLKLSISSALMLCLELWYYAVLVLLAGHMK NATTAISAFSICLNIIAWEFMLCLGFFASASVRVSNELGNGNAKAAKFSMKVIIVTSI CIGLFFWALCLIFGHQLGFLFTSDEKVVETVSGLSVLLSFSVLLNSVQSVLSGGAVGA GRQSIVAYVNICSYYIVGVPLGVVLGYIAHLELKGLWIGMIIGVVIQTTVLGYITWRT NWEEQVKRASERLNKWFLRSSDESNGSPDQERLTE" gene 34515731..34516711 /locus_tag="TCM_025765" /note="dbxref CacaoGD:Thecc1EG025765" mRNA join(34515731..34515803,34516000..34516300, 34516375..34516711) /locus_tag="TCM_025765" /product="Alpha-1,4-glucan-protein synthase family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025324t1" /inference="similar to AA sequence:frave:gene16775" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.85 coverage" CDS join(34515748..34515803,34516000..34516300, 34516375..34516521) /locus_tag="TCM_025765" /note="dbxref frave:gene16775; paralog of Thecc1EG025324t1" /codon_start=1 /product="Alpha-1,4-glucan-protein synthase family protein, putative" /protein_id="EOY10404.1" /db_xref="TAIR:AT5G16510.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NBT1" /translation="MVKNDGINFKSIHMRTIRRLWLNLADHDAPTQALKPGQRNSRYV DAVITVPAGALAPISGINIAFDREVVGPALVPALRLAGEGKFSWETMKDIWSGMCVKV VCDHLGLGVKTCGELIESVRLPRTATTAEDCVVEVAKAIREQLGSTDPVFARAAGLGQ ALEISWI" gene complement(34516811..34526369) /locus_tag="TCM_025766" /note="dbxref CacaoGD:Thecc1EG025766" mRNA complement(join(34516811..34516983,34518577..34518712, 34518790..34518876,34519008..34519126,34519463..34519716, 34519861..34519917,34520013..34520099,34520232..34520773, 34520929..34521176,34523841..34523899,34524552..34525052, 34526244..34526369)) /locus_tag="TCM_025766" /product="Multidrug resistance pump, putative" /inference="alignment:exonerate- protein:2:ricco:29818.m000403" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025764t1" /inference="similar to AA sequence:Phytozome:GSVIVT01029934001" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1779t1" CDS complement(join(34518632..34518712,34518790..34518876, 34519008..34519126,34519463..34519716,34519861..34519917, 34520013..34520099,34520232..34520773,34520929..34521176, 34523841..34523899,34524552..34524673)) /locus_tag="TCM_025766" /note="paralog of Thecc1EG025764t1" /codon_start=1 /product="Multidrug resistance pump, putative" /protein_id="EOY10405.1" /db_xref="Phytozome:GSVIVT01029934001" /db_xref="TAIR:AT3G03620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SY90" /translation="MKAYEDLMKQKQHIDIMVVGISSQAKLDDRVGLNASIECVRSKE ILQMKQIEKIVERIARGVKANDMDERLLGTEPEENSILRRVWEESKKLWRVGFPSMLA RVTSFGMFVVTQAFIGRIGEVQLAAYALIQVITVRFANGILLGMSSATETLCGQAFGA KQYHMLGIYLQRSWIINLFTTAVLLPVFIFASPIFKLLGEDDDIASDAGYISLWFIPM LYFFVFSLTIQKYLQCQLRNMIVGWISAGTFILHVLLSWIFVSKLNWGIPGAMSSMII SSWLVVIGEFIYIFGGWCPNTWKGFTFAAFLDLFPVVKLSISSGVMLCLELWYYAILV LLAGYMKNAAISIDAFSICLNIIAWQLMMFLGFLSAASVRVSNELGRGNAKAAKFSMK VIICTSLCIGVFFWALCLIFGHQFGYLFTSDEEVAKSVADLSVLLSFSVLLNSVQPIL SGKHNNRVAIGAGRQSMVAYVNICSYYVVGVPLGILLGYVAKMEVKGIWIGMIIGVAT QTIVLGYITSRTDWDEQVNKASERLNKWFLRPSETSDEHLSEE" mobile_element 34522673..34524687 /note="source:CACAO_hAT_E3311_scaffold_8 1 2045" /mobile_element_type="transposon:TIR/hAT" mobile_element 34524703..34525013 /note="source:CACAO_hAT_E3311_scaffold_8 3010 3334" /mobile_element_type="transposon:TIR/hAT" mobile_element 34525010..34525735 /note="source:CACAO_hAT_E3311_scaffold_8 3439 4176" /mobile_element_type="transposon:TIR/hAT" gene complement(34526133..34529134) /locus_tag="TCM_046804" /note="dbxref CacaoGD:Thecc1EG046804" mRNA complement(join(34526133..34526601,34526694..34526780, 34526885..34527003,34527112..34527350,34527453..34527509, 34527582..34527668,34527960..34528501,34528635..34528887, 34529000..34529134)) /locus_tag="TCM_046804" /product="MATE efflux family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0015s13550.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025712t1" /inference="similar to AA sequence:ricco:29818.m000401" /note="quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9041t2" CDS complement(join(34526521..34526601,34526694..34526780, 34526885..34527003,34527112..34527350,34527453..34527509, 34527582..34527668,34527960..34528501,34528635..34528883)) /locus_tag="TCM_046804" /note="dbxref ricco:29818.m000401; paralog of Thecc1EG025712t1" /codon_start=1 /product="MATE efflux family protein" /protein_id="EOY10406.1" /db_xref="TAIR:AT3G03620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HMW6" /translation="MDDNLEQRFLAQPQEEDKTDLKRRVWIETKTIWRVAFPGMLSRV TSFGMIVVTQSFLGHIGEVELATYALVQSVFVRFINGILIGMSSATETLCGQAFGAGQ YHMMGIYLQRSWIVDGITATILLPVFFFATPIFKLLGQEDEIADAAGPISLWFIPMLY YMVFGLTIQMYLQAQLKNLVVGCLSAAAFVLHLLLSWIFVYKLNWGLAGAMGSLNICS WAMVFGEFVFIFGGWCPNSWKGFSKAAFYDLLPIVKLSLASGFMICLELWYNAILVLL AGYMKNATIAIAAFSICLNVNAWEFMICLGLYGASIVRVANELGRGNAKAVKFAIKTI MSTSICIGMVFFVLCLVFGRQISYMFTSNEQVAEVMSSLSTLLAVSILFNSIQTVLTG VAIGSGFQSMVAFVNLGCYYAVGLPLGAVLGYLLHLEVVGLWIGLLGGVALQTFIVAI IVWRTDWDEQVKKASERLNRWLIKPEEEDNQSPPQA" gene complement(34530928..34536447) /locus_tag="TCM_046805" /note="dbxref CacaoGD:Thecc1EG046805" mRNA complement(join(34530928..34531129,34531294..34531380, 34531494..34531612,34531746..34531984,34532088..34532144, 34532238..34532324,34532662..34533203,34533323..34533576, 34536335..34536447)) /locus_tag="TCM_046805" /product="MATE efflux family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029922001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046804t1" /inference="similar to AA sequence:Phytozome:GSVIVT01029934001" /note="quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06174t00001" mobile_element complement(34531031..34531099) /note="source:CACAO_Again_on_E227_scaffold_10 1263 1331" /mobile_element_type="transposon:TIR/hAT" CDS complement(join(34531049..34531129,34531294..34531380, 34531494..34531612,34531746..34531984,34532088..34532144, 34532238..34532324,34532662..34533203,34533323..34533571)) /locus_tag="TCM_046805" /note="paralog of Thecc1EG046804t1" /codon_start=1 /product="MATE efflux family protein" /protein_id="EOY10407.1" /db_xref="Phytozome:GSVIVT01029934001" /db_xref="TAIR:AT3G03620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HMW6" /translation="MDNNLGEWFLAKQDEGKSAGLKTRVWIESKIIWRIAFPSMLARV TAFGMVIVTQSFLGHIGEVELATYALIQSILVRFVNGVLIGMSSATETLCGQAFGAEH YHMMGIYLQRSWIVDGATATILVPLFLLATPLLRLLGQEEQIAKAAGTISLWFIPMLY NMVFSLTIQMYLQAQLKNLVVGWLSTASFLLHLLLSWLMVYKLNWGVSGAMGALNISS WAMVIGEFVYIFGGWCPHTWKGFTKAAFYDLMPVVKLSVASGLMICLELWYNAILVLL AGYMKNATISIDAFSICINMNAWEFMICLGFLGASIVRVANELGRGNAKAVKFSIKTI LGTSISFGVFFWILCLVFGHRLSYLFTTNEEVAKAVSSLSTLLAFSILLNSVQPVLSG VATGAGMQSTVAIVNLGCYYAVGIPVGVVLGYVLDFEVRGLWVGLLSGVVLQTVILSV IVWRTDWEEQVRRAYVRLNRWLLKPEAEDNRGPYLA" gene complement(34540368..34547602) /locus_tag="TCM_025768" /note="dbxref CacaoGD:Thecc1EG025768" mRNA complement(join(34540368..34540665,34540754..34540840, 34541028..34541146,34541324..34541562,34541657..34541713, 34541827..34541913,34542552..34543093,34544148..34544595, 34547188..34547602)) /locus_tag="TCM_025768" /product="MATE efflux family protein" /inference="alignment:exonerate- protein:2:ricco:29818.m000400" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025712t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s06650.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02138t00001" CDS complement(join(34540582..34540665,34540754..34540840, 34541028..34541146,34541324..34541562,34541657..34541713, 34541827..34541913,34542552..34543093,34544148..34544402)) /locus_tag="TCM_025768" /note="paralog of Thecc1EG025712t1" /codon_start=1 /product="MATE efflux family protein" /protein_id="EOY10408.1" /db_xref="Phytozome:POPTR_0013s06650.1" /db_xref="TAIR:AT1G33110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C420" /translation="MEGDISEKLLAGTENTEVEEVRFREKLWTETKTMWVVAGPAIFT RFSTFGVTVISQAFAGHIGATELAAYSLCFTVLLRFGNGVLLGMASALETLCGQAFGA KQYHMLGIYLQRSWLVLFMTAFCLLPLYIFATPLLIALGQDEKIAEVAGYVSNWFIFV VFSFIVSFTCQMFLQAQSKNMIIAYLAAFSIGIHIFLSWLLAMKLNFGLTGAMLSTVL AYWLPNIGQILFVTCGGCKDTWKGFSMLAFKDLWPVVKLSLSSGAMLCLELWYNTILV LLTGNLKNAQVAIDALAICLNINGWEMMISLGFLAAASVRVSNELGRGSSKAAKFSIM TTTLTSLAIGFVLFVLFLILRGRLAYIFTESEEVASAVADLSPLLACSILLNSVQPVL SGVAVGAGWQGIVAWVNIASYYLVGIPIGVVLGYVLDMEVKGVWIGMLLGTLLQTVVL VVITWKTDWDKQVILARTRVNKWFVPESKEESSNTENGA" mobile_element 34545570..34546641 /note="source:CACAO_on_E206_scaffold_2 1 1090" /mobile_element_type="transposon:TIR/hAT" mobile_element 34547494..34551475 /note="source:INTACT381F_F10_scaffold_3-int 1 3958" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(34554298..34558824) /locus_tag="TCM_025770" /note="dbxref CacaoGD:Thecc1EG025770" mRNA complement(join(34554298..34555147,34555915..34556433, 34558488..34558824)) /locus_tag="TCM_025770" /product="Co-chaperone GrpE family protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400048843" /inference="similar to AA sequence:ricco:29818.m000399" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14637t1" CDS complement(join(34554872..34555147,34555915..34556433, 34558488..34558739)) /locus_tag="TCM_025770" /note="dbxref ricco:29818.m000399" /codon_start=1 /product="Co-chaperone GrpE family protein" /protein_id="EOY10409.1" /db_xref="TAIR:AT5G17710.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I664" /translation="MATLLKTLPFKSPASLPPRVTPISLISPKPFRVCLKQRIARTSC PFRFSSTPSLRFVKLVPLASNGGETETTEAQQEVQEPQIEDSSDGAVAVEEDAGVDES SDVEEISSSAIVSLLQSYKEALASNDESKVADIEAFLKSIEDEKVDLENKMASLLEEL SIEKDRIIRISADFDNFRKRTERERLSLVTNAQGEVLENLLPVLDNFERAKAQIKVET EGEEKINNSYQSICKQFMEILGSLGVEPVETVGNPFDPMLHEAIMREDSTEFEEGIIL QEFRKGFKLGDRLLRPSMVKVSAGPGPAKPEQGESSGGADVGETTETSETVRSNETAE SSETSETNPGAESS" gene 34565349..34573062 /locus_tag="TCM_025771" /note="dbxref CacaoGD:Thecc1EG025771" mRNA join(34565349..34565662,34566325..34566386, 34566746..34566833,34566926..34566987,34567072..34567168, 34567564..34568016,34568651..34569322,34569496..34569606, 34569711..34569799,34569907..34569993,34571013..34571142, 34571343..34571388,34571886..34572456) /locus_tag="TCM_025771" /product="GTPase activating protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:29818.m000398" /inference="similar to AA sequence:Phytozome:GSVIVT01029915001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc661t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9138t1" mRNA join(34565349..34565662,34566325..34566386, 34566746..34566833,34566926..34566987,34567072..34567168, 34567564..34568016,34568651..34569322,34569683..34569799, 34569907..34569993,34571013..34571142,34571343..34571388, 34571886..34572456) /locus_tag="TCM_025771" /product="ARF GAP-like zinc finger-containing protein ZIGA4, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:29818.m000398" /inference="similar to AA sequence:Phytozome:GSVIVT01029915001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc661t9; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9138t1" mRNA join(34565471..34565662,34566325..34566386, 34566746..34566833,34566926..34566987,34567072..34567168, 34567564..34568016,34568651..34569322,34569496..34569606, 34569683..34569799,34569907..34569993,34571013..34571142, 34571343..34571389,34571886..34572860,34572974..34573062) /locus_tag="TCM_025771" /product="ARF GAP-like zinc finger-containing protein ZIGA4, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29818.m000398" /inference="similar to AA sequence:Phytozome:GSVIVT01029915001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9138t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9138t1" CDS join(34565567..34565662,34566325..34566386, 34566746..34566833,34566926..34566987,34567072..34567168, 34567564..34568016,34568651..34569322,34569496..34569606, 34569683..34569799,34569907..34569993,34571013..34571142, 34571343..34571389,34571886..34571960) /locus_tag="TCM_025771" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="ARF GAP-like zinc finger-containing protein ZIGA4, putative isoform 1" /protein_id="EOY10410.1" /db_xref="Phytozome:GSVIVT01029915001" /db_xref="TAIR:AT1G08680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I6D3" /translation="MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTF VCMTCSGIHREFTHRVKSVSMSKFTSQEVEALQNGGNQRARDIYLKDWDLQRQRLPDS SNADKIREFIKNVYVDRKYVGGKTSDKPPRDMQSLRNHEDEIRRASSYHSYSQSPPYD YQYEDRRYGKQAAAVLSRKPGSDRGHYVGKVSSFVYSPGRLSDQMFEDRFANEGSAPR VSDYSVSSGGDPFKSGTGSPNFQKDIGFSSPTAQPPRDVLSEDTQHQTINLFVDPSSK KDAGGIPRPQRTKSMGSFGSFDSNSMSVKSYNSGIGLDVVSEPEQTAGSCHDKASTFP QSSVPVNYGGLDLFTATEASAAPPIGFFQLPATSSISSEDIFQPAAVSTMPPVNLFQP SPATPSIDLIAGIAEQPPAAIFDRKSPELPEPKNEGWATFDTPQHAASNPVTQNLSTA VMSSDGDLSVKLDQLSSLNTTIQWPLFGNSSAFGATSSMSSQWQEGLHDGQASTAATS TQSWNAFNDSAESLSLEPQVAVYNHLATADQHLGLGVSENLDNDAIQTAASHTGFPDA TLSSEDGLAPSYAPLVNPPLGEKQSYAADRKSTNPFDLPYDSESEQSDMFLDMSSLQT ALPNAQLPSAYLGGVSQPWFPQNPVTPCIPGTPQGGLAYMSGQAPSSQLSECPSPRAC CFHRRKSFCIGFYWQK" CDS join(34565567..34565662,34566325..34566386, 34566746..34566833,34566926..34566987,34567072..34567168, 34567564..34568016,34568651..34569322,34569683..34569799, 34569907..34569993,34571013..34571142,34571343..34571388, 34571886..34571940) /locus_tag="TCM_025771" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="ARF GAP-like zinc finger-containing protein ZIGA4, putative isoform 3" /protein_id="EOY10412.1" /db_xref="Phytozome:GSVIVT01029915001" /db_xref="TAIR:AT1G08680.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I6D3" /translation="MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTF VCMTCSGIHREFTHRVKSVSMSKFTSQEVEALQNGGNQRARDIYLKDWDLQRQRLPDS SNADKIREFIKNVYVDRKYVGGKTSDKPPRDMQSLRNHEDEIRRASSYHSYSQSPPYD YQYEDRRYGKQAAAVLSRKPGSDRGHYVGKVSSFVYSPGRLSDQMFEDRFANEGSAPR VSDYSVSSGGDPFKSGTGSPNFQKDIGFSSPTAQPPRDVLSEDTQHQTINLFVDPSSK KDAGGIPRPQRTKSMGSFGSFDSNSMSVKSYNSGIGLDVVSEPEQTAGSCHDKASTFP QSSVPVNYGGLDLFTATEASAAPPIGFFQLPATSSISSEDIFQPAAVSTMPPVNLFQP SPATPSIDLIAGIAEQPPAAIFDRKSPELPEPKNEGWATFDTPQHAASNPVTQNLSTA VMSSDGDLSVKLDQLSSLNTTIQWPLFGNSSAFGATSSMSSQWQEGLHDGQASTAATS TQNLDNDAIQTAASHTGFPDATLSSEDGLAPSYAPLVNPPLGEKQSYAADRKSTNPFD LPYDSESEQSDMFLDMSSLQTALPNAQLPSAYLGGVSQPWFPQNPVTPCIPGTPQGGL AYMSGQAPSSQLSNVPAQGPVASIGGNPFA" CDS join(34565567..34565662,34566325..34566386, 34566746..34566833,34566926..34566987,34567072..34567168, 34567564..34568016,34568651..34569322,34569496..34569606, 34569711..34569799,34569907..34569993,34571013..34571025) /locus_tag="TCM_025771" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="GTPase activating protein, putative isoform 2" /protein_id="EOY10411.1" /db_xref="Phytozome:GSVIVT01029915001" /db_xref="TAIR:AT1G08680.4" /db_xref="UniProtKB/TrEMBL:UniRef50_E5GBY0" /translation="MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTF VCMTCSGIHREFTHRVKSVSMSKFTSQEVEALQNGGNQRARDIYLKDWDLQRQRLPDS SNADKIREFIKNVYVDRKYVGGKTSDKPPRDMQSLRNHEDEIRRASSYHSYSQSPPYD YQYEDRRYGKQAAAVLSRKPGSDRGHYVGKVSSFVYSPGRLSDQMFEDRFANEGSAPR VSDYSVSSGGDPFKSGTGSPNFQKDIGFSSPTAQPPRDVLSEDTQHQTINLFVDPSSK KDAGGIPRPQRTKSMGSFGSFDSNSMSVKSYNSGIGLDVVSEPEQTAGSCHDKASTFP QSSVPVNYGGLDLFTATEASAAPPIGFFQLPATSSISSEDIFQPAAVSTMPPVNLFQP SPATPSIDLIAGIAEQPPAAIFDRKSPELPEPKNEGWATFDTPQHAASNPVTQNLSTA VMSSDGDLSVKLDQLSSLNTTIQWPLFGNSSAFGATSSMSSQWQEGLHDGQASTAATS TQSWNAFNDSAESLSLEPQVAVYNHLATADQHLGLGVSELPPILVSLMLLYHQRMAWH HHMLHWLIHLWERNSPMLLIVNQPTRLIFLMILNRNKVICSWI" mRNA join(34566746..34566833,34566926..34566987, 34567072..34567168,34567564..34568016,34568651..34569322, 34569683..34569799,34569907..34569993,34571013..34571142, 34571341..34571388,34571886..34572860,34572974..34573062) /locus_tag="TCM_025771" /product="GTPase activating protein, putative isoform 4" /inference="alignment:exonerate- protein:2:ricco:29818.m000398" /inference="similar to AA sequence:Phytozome:GSVIVT01029915001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9138t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9138t1" CDS join(34566780..34566833,34566926..34566987, 34567072..34567168,34567564..34568016,34568651..34569322, 34569683..34569799,34569907..34569993,34571013..34571142, 34571341..34571351) /locus_tag="TCM_025771" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="GTPase activating protein, putative isoform 4" /protein_id="EOY10413.1" /db_xref="Phytozome:GSVIVT01029915001" /db_xref="TAIR:AT1G08680.2" /db_xref="UniProtKB/TrEMBL:UniRef50_E5GBY0" /translation="MSKFTSQEVEALQNGGNQRARDIYLKDWDLQRQRLPDSSNADKI REFIKNVYVDRKYVGGKTSDKPPRDMQSLRNHEDEIRRASSYHSYSQSPPYDYQYEDR RYGKQAAAVLSRKPGSDRGHYVGKVSSFVYSPGRLSDQMFEDRFANEGSAPRVSDYSV SSGGDPFKSGTGSPNFQKDIGFSSPTAQPPRDVLSEDTQHQTINLFVDPSSKKDAGGI PRPQRTKSMGSFGSFDSNSMSVKSYNSGIGLDVVSEPEQTAGSCHDKASTFPQSSVPV NYGGLDLFTATEASAAPPIGFFQLPATSSISSEDIFQPAAVSTMPPVNLFQPSPATPS IDLIAGIAEQPPAAIFDRKSPELPEPKNEGWATFDTPQHAASNPVTQNLSTAVMSSDG DLSVKLDQLSSLNTTIQWPLFGNSSAFGATSSMSSQWQEGLHDGQASTAATSTQNLDN DAIQTAASHTGFPDATLSSEDGLAPSYAPLVNPPLGEKQSYAADRKSTNPFDLPYDSE SEQSDMFLDMSSLQTALPNAQLPSAYLGGVSQPWFPQNPVTPCIPGTPQEVA" mobile_element complement(34570204..34570288) /note="source:CACAO_M_S_E90022_F9_scaffold_8 3125 3203" /mobile_element_type="retrotransposon:LTR/Gypsy" misc_feature join(34572840..34572860,34572974..34573884) /locus_tag="TCM_025771" /note="Gene fragment of Thecc1EG025771t1; dbxref gnl|CacaoGD|Thecc1EG025771t1; quality class is mediumpartial-partof is thecc1eg025771t1, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1654t1_C2; dbxref CacaoGD:Thecc1EG025772t1" gene complement(34574089..34577802) /locus_tag="TCM_025773" /note="dbxref CacaoGD:Thecc1EG025773" mRNA complement(join(34574089..34574475,34576404..34577802)) /locus_tag="TCM_025773" /product="F-box family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025776t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s06160.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1435t4" CDS complement(34576465..34577655) /locus_tag="TCM_025773" /note="paralog of Thecc1EG025776t1" /codon_start=1 /product="F-box family protein, putative" /protein_id="EOY10414.1" /db_xref="Phytozome:POPTR_0013s06160.1" /db_xref="TAIR:AT5G07610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I639" /translation="MKKTKPSSAGISSAETIAHNQDLLTQILIRIPPKPLFKLKSVSK RWLSLISSIQFSHSHSLHHQNQGFLTPTALFLGIGNYYRLPFGLPVLPLNPETQVPVL DFIVDPQFKILQSCNGLLLGHCYYKSDEGSRYFICNPSTHKFRIISLPVSQLGSLRAV NLAYDPIKSPYYKIICVRKLISPSNRFFIYIYSSKSDAWDASWISFQANEYIRFDYAV FCNGVIHWNSNGRKSLRFDVENKILKKIPMLAPMFQAPEESEDEDSRYFGESRGHLHL GVTYMPFCLKVNVFEMAADYSHWFLKYCLKLDDAMKILPDLRSFFIENYFGFPVLSVI RSEGEESKVVILVDYKAICYELKDGILLRVYDLKQYPETLNRCPLNYIGIQSFQYFET LAWV" gene 34578290..34583278 /locus_tag="TCM_025775" /note="dbxref CacaoGD:Thecc1EG025775" mRNA join(34578290..34578414,34579430..34579767, 34580035..34580346,34582663..34583278) /locus_tag="TCM_025775" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011913t1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.36 coverage" mobile_element 34579206..34586757 /note="source:INTACT197_F50_scaffold_5-int 1 7552" /mobile_element_type="retrotransposon:LTR/Copia" CDS join(34579552..34579767,34580035..34580346, 34582663..34582803) /locus_tag="TCM_025775" /note="paralog of Thecc1EG011913t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10415.1" /translation="MASDSYTNNSSIATDSSNLTKNLITINAAAQLLLKLTSLNYFSW KAQFNTLLFGLNLLGCLDGNFPCLSATVIANELTVLGDPPSDVNLLVYTTRGLGPVYK ELITALRTQDTVVPFEKLFDKIIDHETFLFYNEKQYPDPTPPITNLAQTSSSSHRPPK SLSPSSAPSLLPNPVFVNWTFVAEDMLEKLKYMQIDTISCCNENELHCSEKHSVLFAT LFGF" gene complement(34586727..34589069) /locus_tag="TCM_025776" /note="dbxref CacaoGD:Thecc1EG025776" mRNA complement(join(34586727..34588418,34589011..34589069)) /locus_tag="TCM_025776" /product="F-box family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s04500.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025773t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s06160.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.90 coverage" CDS complement(34587132..34588313) /locus_tag="TCM_025776" /note="paralog of Thecc1EG025773t1" /codon_start=1 /product="F-box family protein, putative" /protein_id="EOY10416.1" /db_xref="Phytozome:POPTR_0013s06160.1" /db_xref="TAIR:AT5G07610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I639" /translation="MSSTISSAADAIASNEDLLTEILLRLPAKPLLKFKFVSKEWFSL ISSSQFCLFHARRCRDNASFTAAVLLFHCDTSHTPPTGFHVVPLKNQCSKVPFFDYLG DSDVRIMQSCNGLLLCRSCDKFQYLSYFICNPSTNKIRIVSFPQAEVDGFVYAVNLAF DPLKSVHYKIISIRRLVWVAPRFQIDIYSSKTDSWSVKVLNFTKPDDVWLNCGVFCNG AIHWEGGDRSSLYLDVENMCLKAMPMPARMLDAPEGSYGESNRFLGESRGHLHLTVNY KPLCLQFNIFEMAADYSDWFLKYRMNLETVVKGFPEIPLYPDEEGGNQVSALCVIRSK IDEVSTVVVFVNGKAISYDLHDGTLTKLCDLEPCPKIHGHQSNYEAFHVYQYFETLSC V" gene complement(34589119..34592919) /locus_tag="TCM_025777" /note="dbxref CacaoGD:Thecc1EG025777" mRNA complement(join(34589119..34589496,34591527..34592919)) /locus_tag="TCM_025777" /product="F-box family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s06160.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025776t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s06160.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1021t4" CDS complement(34591572..34592774) /locus_tag="TCM_025777" /note="paralog of Thecc1EG025776t1" /codon_start=1 /product="F-box family protein, putative" /protein_id="EOY10417.1" /db_xref="Phytozome:POPTR_0013s06160.1" /db_xref="TAIR:AT5G07610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I639" /translation="MQAMKKKTCMTLNSAAETIAYNQDLLTEILLRLPTKSLIKFKCV SKQWLFIISDPDFCLSHTRHHHSNGFLSPTALLLKGDCYTPPSEFAIVPLKHYSKVPF FHYIIDPDIKILQSCNGLLICESSRRSYLICNPTTKSFWRLHPPSNSYYNFLSKFCVN LAFDPLRSPHYKIICIWENSREPYKFNLDVFSSETDSWSISIITFEVDEEEAIDFQDG VFCNGRIHWCGYGNETLYFDVENESLKTMPMTLPTRMDAPEECRYFGESRGVLYLAVT YCMAVCLEFDVFEMARDYSQWNWKKRLNLGDAMKVFPELELGCVEYCPGFSGVCFIRS EKEEEPKVVLWADGKIICFDFNEGAWKKLYDLGPGFKIGSLYLGEDDHLHYEKFHAYQ YFENLSCL" mobile_element 34595872..34598964 /note="source:CACAO_M_E44177_F15_scaffold_5 1 3093" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(34598806..34598982) /note="source:CACAO_M_E13363_F273_scaffold_3 3528 3702" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(34605789..34609558) /locus_tag="TCM_025779" /note="dbxref CacaoGD:Thecc1EG025779" mRNA complement(join(34605789..34606118,34607295..34607767, 34608180..34609558)) /locus_tag="TCM_025779" /product="F-box family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025781t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s04500.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.13 coverage" CDS complement(34608217..34609527) /locus_tag="TCM_025779" /note="paralog of Thecc1EG025781t1" /codon_start=1 /product="F-box family protein, putative" /protein_id="EOY10418.1" /db_xref="Phytozome:POPTR_0005s04500.1" /db_xref="TAIR:AT5G07610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MZN0" /translation="MVTTRSATRLRAKITSVEKVVNSEDLLQEILLRLPTKTLLRFKL VSKPWLSLISSTQFSLAHTRFLQNNRSLKPHAFFLDVLYKKLPSKFKFLRLNPNIKRL PPFDFIDAPRIRIIQSCVGLLLCVSESDYGLRYFICNPATKKFKVISVYEHEVIYNSY KYVANNLGLDPSKSAKLFMDYDQRASVSLAFDPTIEVRRHAGVNLAFDPLISPHYKIF SIWQQLFFGKDPESTTCYIFPTYFIDIYSSETKSWSASKINFNSKHNINIDRAVFFNG AIHWDCADTQSWYIDVNNECLKTMPMPGVHSGFRYFGESGGHLHLVVATGFSQLKFKI FEMEADYSNWYLKYNVHLEAETFTVVPRRQQNRMRSYLLSCVVESDEDEGDSLLVVLP NGFAISYNLEDGKVKRLRCSNIDKDGHDGGRFHAFPYFETLSCL" mobile_element 34615656..34617979 /note="source:INTACT174_F38_scaffold_5-int 2071 4440" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(34618356..34623002) /note="source:INTACT114_F38_scaffold_10-int 1 4641" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(34622826..34636540) /locus_tag="TCM_025781" /note="dbxref CacaoGD:Thecc1EG025781" mRNA complement(join(34622826..34622886,34631757..34633160, 34636202..34636540)) /locus_tag="TCM_025781" /product="F-box family protein, putative" /inference="alignment:exonerate-protein:2:frave:gene12242" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025779t1" /inference="similar to AA sequence:frave:gene12233" /note="quality class is strong, express is none, homology is paralog strong, intron is weak, protein is complete" CDS complement(34631794..34633104) /locus_tag="TCM_025781" /note="dbxref frave:gene12233; paralog of Thecc1EG025779t1" /codon_start=1 /product="F-box family protein, putative" /protein_id="EOY10419.1" /db_xref="TAIR:AT5G07610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MZN0" /translation="MVTTRSSARLRANITSAKKVANSEDLLQEILLRLPTKTLLRFKL VSKPWLSLISSTHFSLAHTRFLQNNRSLKPHAFFLDVLYKKLPSKFKFLRLNPNIKRL PPFDFIDAPRIRIIQSCVGLLLCVSESDYGLRYFICNPATKKFKVISVYEHEVIYNSY EYVANNLGLDPSESAKLFMDYDQRASVNLAFDPTIEVRRHAGVNLAFDPLISPHYKIF SIWQQLLFGKDPESTTCYIFPTYFIDIYSSETNSWSASKINFNSKHNINIDRAVFFNG AIHWDCADTQSWYIDVNNECLKTMPMPGVHSGFRYFRESGGHLHLVVAKGFSQLKFKI FEMETDYSNWYLKYNVHLEAETFTVVPRRQQNRMRSYLLSCVVQSDEDEGDSILVVLP NGFAISYNLEDGIVKRLRCSNIDKDGHDGGRFHAFPYFETLSCL" mobile_element 34633685..34633726 /note="source:CACAO_M_E3884_F22_scaffold_1 1 43" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(34633834..34637055) /note="source:CACAO_M_E70891_F369_scaffold_10 1958 8212" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34636477..34637242 /note="source:CACAO_M_E42514_F40_scaffold_5 15208 15939" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 34647862..34650722 /note="source:CACAO_M_E44181_F341_scaffold_5 1 2861" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34653788..34653826 /note="source:scaffold_2_CACTA_0262 742 781" /mobile_element_type="transposon:TIR/CACTA" gene complement(34655377..34660584) /locus_tag="TCM_025784" /note="dbxref CacaoGD:Thecc1EG025784" mRNA complement(join(34655377..34655712,34658253..34658810, 34659237..34660584)) /locus_tag="TCM_025784" /product="F-box family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025781t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s04500.1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(34659273..34660559) /locus_tag="TCM_025784" /note="paralog of Thecc1EG025781t1" /codon_start=1 /product="F-box family protein, putative" /protein_id="EOY10420.1" /db_xref="Phytozome:POPTR_0005s04500.1" /db_xref="TAIR:AT5G07610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MZN0" /translation="MVTTRSSSRLRVKITSAETVANNEDLFQEILPRLPTKTLLKFKL VSKPWLSLISSTHFSLSHTRFLQNNHSLKPHALFLDILYEKLPSKFMFLHLNPDINPL PSFNFIDVRCVKIIQSCIGLLLWVSVSDDGLRFFVCNPTTKKFKVISIPSRQEIYNSY DYVANSMGLDLSKSTKLFLDNDASVNLAFDPIVRFCQHGVNLAFDPYKSPHYKISSIW REVLFSKDPENTTFYIFPRYSVDIYSSETNSWSVSKIEFNSKKYIHADHAVFFKGAIH WDCSDTQSWYIDVNNECLKTMPMPRVNKGYRYFGESGGHLHLAVATEFPHLEFTIFEM EADYSSWSSKYNVTLLVVPRRRSRIQSYLLSYALQCDEKQGDSIVIALSNDKGYSYNL ESGTVQKLWCSNVKKYEHDHTSRFHALQYFESLSCI" mobile_element complement(34661077..34661232) /note="source:scaffold_5_CACTA_0614 2462 2620" /mobile_element_type="transposon:TIR/CACTA" mobile_element 34665285..34665378 /note="source:CACAO_M_E34337_F74_scaffold_4 1676 1773" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(34665996..34667005) /note="source:INTACT6F_F10_scaffold_1-int 2922 3956" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(34666995..34667438) /note="source:CACAO_M_E44260_F10_scaffold_5 3116 3556" /mobile_element_type="retrotransposon:LTR/Copia" gene 34668516..34670242 /locus_tag="TCM_025785" /note="dbxref CacaoGD:Thecc1EG025785" mRNA join(34668516..34669201,34670023..34670242) /locus_tag="TCM_025785" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025777t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.26 coverage" CDS 34668761..34669153 /locus_tag="TCM_025785" /note="paralog of Thecc1EG025777t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10421.1" /translation="MLSFPRNPIKDCQFSVNFAFDPIQSPHYKIISIREASQESFKFE MDICSSDTDSWTASRISFDVDEEECITFEDAVFCNGMIHWNSYGNESLCFDPGPGVKI GSIHLDLYNHLHEQRFLAYKYFVDLSCI" mobile_element 34670670..34675617 /note="source:CACAO_M_E44184_F10_scaffold_5 1 4948" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 34678680..34679815 /note="source:CACAO_M_E58877_F5_scaffold_9 17827 18952" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(34680525..34680933) /note="source:CACAO_M_E44210_F112_scaffold_5 10623 11081" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 34681113..34681378 /note="source:CACAO_M_E58877_F5_scaffold_9 8772 9036" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(34681489..34681679) /note="source:CACAO_M_E44210_F112_scaffold_5 10509 10697" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 34681711..34681909 /note="source:CACAO_M_E58877_F5_scaffold_9 20402 20584" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34681793..34681992 /note="source:CACAO_M_E52694_F25_scaffold_8 4973 5180" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 34681902..34682031 /note="source:CACAO_M_E58877_F5_scaffold_9 8275 8380" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34682322..34683782 /note="source:CACAO_M_E58877_F5_scaffold_9 8630 10081" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34683883..34687051 /note="source:CACAO_M_E58877_F5_scaffold_9 10053 13220" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34687299..34687587 /note="source:CACAO_M_E58877_F5_scaffold_9 13322 13610" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34687689..34688992 /note="source:INTACT1427F_F390_scaffold_9-int 6893 8194" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(34689095..34689444) /note="source:CACAO_M_E3935_F390_scaffold_1 8169 8518" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34689744..34690976 /note="source:INTACT1427F_F390_scaffold_9-int 8668 9891" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34691156..34692889 /note="source:CACAO_M_E58877_F5_scaffold_9 14122 15839" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34693977..34695872 /note="source:INTACT700_F304_scaffold_7-int 12635 14530" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34696179..34697041 /note="source:CACAO_M_E58877_F5_scaffold_9 17714 18564" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34699023..34699191 /note="source:CACAO_M_E58877_F5_scaffold_9 20429 20597" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34699292..34699403 /note="source:CACAO_M_E58877_F5_scaffold_9 20645 20745" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34701042..34701153 /note="source:CACAO_M_S_E84804_F74_scaffold_7 2100 2212" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 34701571..34707843 /locus_tag="TCM_025790" /note="dbxref CacaoGD:Thecc1EG025790" mRNA join(34701571..34704249,34704470..34704556, 34704647..34705291,34705405..34705569,34705754..34706048, 34706145..34706359,34706435..34706740,34706881..34706944, 34707078..34707317,34707398..34707843) /locus_tag="TCM_025790" /product="Multidrug resistance-associated protein 3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g43810.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030692t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s37340.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is medium, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9103t1" mRNA join(34701571..34704249,34704470..34704556, 34704647..34705291,34705405..34705569,34705754..34706048, 34706145..34706359,34706435..34706740,34707078..34707317, 34707398..34707843) /locus_tag="TCM_025790" /product="Multidrug resistance-associated protein 3 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g43810.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030692t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s37340.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is medium, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:PASA:2:TSA:puevd3b024942t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9103t1" CDS join(34701874..34704249,34704470..34704556, 34704647..34705291,34705405..34705569,34705754..34706048, 34706145..34706359,34706435..34706740,34706881..34706944, 34707078..34707317,34707398..34707513) /locus_tag="TCM_025790" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG030692t1" /codon_start=1 /product="Multidrug resistance-associated protein 3 isoform 1" /protein_id="EOY10422.1" /db_xref="Phytozome:POPTR_0001s37340.1" /db_xref="TAIR:AT3G13080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LK64" /translation="MKLFASESSLLMSSATSFDFFLKPIFLHGLYASLHLVLLLSLLV LWVVNRVNEAGGEGSKERLRQRKVFWYKQTLACCFIVSAFNIVLCFLSYFYWYRNGWS EDKLVTLSDYVVKTLAWGATCIYLQCQFSKSGEQKKFPFLLRIWWVFYFSISCYCLVI DVVLDKKHVSFPSLYLVSDVFSVVTGLFLCVVGLFGRNEGEDTLLEQPLLNGGSSVGK GVELSKKKGGDAVTPYSNAGIFSILTFSWMGPLIAAGNEKTLDLEDVPQLDNSDSVVG ALPNFRNRLESADSEGSGVTTLKLVKALFFSAWKDIFWTALLAFMYTVASYVGPYIIG TFVQYLSGRREFKNEGYLLVTAFFIAKLVECISQRRWFFKLQQVGLRLRAVLVAMIYN KGLTLSCQSKQSHTSGEIVNFMTVDAERVGDFSWYMHELWLIALQVALALLILYKNLG LACIATLVATVLSMLANIPLGKMLEKFQDKLMESKDKRMKATSEILRNMRILKLQGWE MKFLSKIIGLRNVEEGWLKRFIYTNVMSSFVFWVAPSFVSVATFSACMFLRVPLDLGK VLSALATFKILQGTIDSLPDTVSMIAQTKVSLDRIASFLQLDDLQPDVIEKLPRGSSD TAIEIVDGNFSWDLSSSSATLQDINLKVCHGMRVVVCGTVGSGKSSLLSCILGELPKI SGTLKLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYDRVLEACTLKKDLEILSFG DQTIIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGI LSSKTVIYVTHQVEFLPAADLILVMKDGRITQAGKYNDILNSGTDLMELVGAHKKALS ALDIVDAGSVSEKIISEGDGATKCANGKMEKEENQGNEIGKVDDVGPKGQLVQEEERE KGKVGFSVYWKYITTAYGGALVPLILLVQILFQIFQIGSNYWMAWASPVSSDVKPPVG SFTLIIVYLALAIGSAISVLARATLLNIAGYKTATLLFEKMHLCIFRAPMSFFDSTPS GRILNRASTDQSAVDLNIPYQVGSFAFSVIHLLGIIVVMSQVAWQTFIISIPVIATCI WYQQCYISSARELSRLVGVCKAPVIQHFAETISGATTIRSFDQESRFQETNMILTDAY SRPKFHIAGAMEWLCFRLDMLTSITFAFSLFFLISIPEGVIDPAIAGLAVMYGLNLNI LQTWVVWTICNMENKIISVERMLQYSNIPSEPALVIESNRPDRSWPYHGEVRILDLQV QYAPHMPLVLRGLTCTFLGGLKTGIVGRTGSGKSTLMQTLFRIVEPAAGQIIIDGVNI SSIGLHDLRSRLSIIPQDPTMFEGTIRSNLDPLEENTDEQIWEALDKCQLGDGVRKKE GRLDSSVNENGENWSMGQRQLVCLARVLLKKNKILVLDEATASVDTATDNLIQTTLRE HFFDCTVITIAHRITSVLDSDMVLLLSHGLVEEYDFPARLLENKSSSFAQLVAEYTVR SKSSLATE" CDS join(34701874..34704249,34704470..34704556, 34704647..34705291,34705405..34705569,34705754..34706048, 34706145..34706359,34706435..34706740,34707078..34707164) /locus_tag="TCM_025790" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG030692t1" /codon_start=1 /product="Multidrug resistance-associated protein 3 isoform 2" /protein_id="EOY10423.1" /db_xref="Phytozome:POPTR_0001s37340.1" /db_xref="TAIR:AT3G13080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LK64" /translation="MKLFASESSLLMSSATSFDFFLKPIFLHGLYASLHLVLLLSLLV LWVVNRVNEAGGEGSKERLRQRKVFWYKQTLACCFIVSAFNIVLCFLSYFYWYRNGWS EDKLVTLSDYVVKTLAWGATCIYLQCQFSKSGEQKKFPFLLRIWWVFYFSISCYCLVI DVVLDKKHVSFPSLYLVSDVFSVVTGLFLCVVGLFGRNEGEDTLLEQPLLNGGSSVGK GVELSKKKGGDAVTPYSNAGIFSILTFSWMGPLIAAGNEKTLDLEDVPQLDNSDSVVG ALPNFRNRLESADSEGSGVTTLKLVKALFFSAWKDIFWTALLAFMYTVASYVGPYIIG TFVQYLSGRREFKNEGYLLVTAFFIAKLVECISQRRWFFKLQQVGLRLRAVLVAMIYN KGLTLSCQSKQSHTSGEIVNFMTVDAERVGDFSWYMHELWLIALQVALALLILYKNLG LACIATLVATVLSMLANIPLGKMLEKFQDKLMESKDKRMKATSEILRNMRILKLQGWE MKFLSKIIGLRNVEEGWLKRFIYTNVMSSFVFWVAPSFVSVATFSACMFLRVPLDLGK VLSALATFKILQGTIDSLPDTVSMIAQTKVSLDRIASFLQLDDLQPDVIEKLPRGSSD TAIEIVDGNFSWDLSSSSATLQDINLKVCHGMRVVVCGTVGSGKSSLLSCILGELPKI SGTLKLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYDRVLEACTLKKDLEILSFG DQTIIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGI LSSKTVIYVTHQVEFLPAADLILVMKDGRITQAGKYNDILNSGTDLMELVGAHKKALS ALDIVDAGSVSEKIISEGDGATKCANGKMEKEENQGNEIGKVDDVGPKGQLVQEEERE KGKVGFSVYWKYITTAYGGALVPLILLVQILFQIFQIGSNYWMAWASPVSSDVKPPVG SFTLIIVYLALAIGSAISVLARATLLNIAGYKTATLLFEKMHLCIFRAPMSFFDSTPS GRILNRASTDQSAVDLNIPYQVGSFAFSVIHLLGIIVVMSQVAWQTFIISIPVIATCI WYQQCYISSARELSRLVGVCKAPVIQHFAETISGATTIRSFDQESRFQETNMILTDAY SRPKFHIAGAMEWLCFRLDMLTSITFAFSLFFLISIPEGVIDPAIAGLAVMYGLNLNI LQTWVVWTICNMENKIISVERMLQYSNIPSEPALVIESNRPDRSWPYHGEVRILDLQV QYAPHMPLVLRGLTCTFLGGLKTGIVGRTGSGKSTLMQTLFRIVEPAAGQIIIDGVNI SSIGLHDLRSRLSIIPQDPTMFEGTIRSNLDPLEENTDEQIWELMRMERIGAWVRGSW SVLRVCCLRKIRS" mobile_element 34708878..34709964 /note="source:scaffold_10_CACTA_0130 11057 12141" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(34711491..34711731) /note="source:scaffold_9_CACTA_0929 945 1183" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(34711900..34712050) /note="source:scaffold_9_CACTA_0929 796 949" /mobile_element_type="transposon:TIR/CACTA" gene 34715405..34716427 /locus_tag="TCM_025791" /note="dbxref CacaoGD:Thecc1EG025791" mRNA 34715405..34716427 /locus_tag="TCM_025791" /product="ZCF37, putative" /inference="alignment:exonerate- protein:2:ricco:30170.m013611" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034694t1" /inference="similar to AA sequence:Phytozome:POPTR_0002s11900.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g13290t00001" CDS 34715612..34716310 /locus_tag="TCM_025791" /note="paralog of Thecc1EG034694t1" /codon_start=1 /product="ZCF37, putative" /protein_id="EOY10424.1" /db_xref="Phytozome:POPTR_0002s11900.1" /db_xref="TAIR:AT1G59590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H198" /translation="MFYPFFCGAFHHQKEDDDELWSTPASTPKKSRRKKDSKNPYSTR GLDQFSALLAELEEKRQQIYSQMGSEGIVRFVYKNSNDCVPVVVKLKDKKEEKNKTED TRDHHPESCVSEVVEKLPTPSESDEKIEQKKSFSWNIVKSQDWRRPSYYIPAVIISIL LFLVFFGRSVAILCTCMGWYVVPTISGEGSNLRTSMKKKDYVRKLSGNKMVSGKLSSP KNNKFGAIRDKSPR" mobile_element 34718330..34718533 /note="source:CACAO_Mutator_E39_scaffold_1 10550 10745" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(34718376..34720025) /note="source:scaffold_10_CACTA_0130 7933 9608" /mobile_element_type="transposon:TIR/CACTA" gene complement(34720156..34722701) /locus_tag="TCM_025792" /note="dbxref CacaoGD:Thecc1EG025792" mRNA complement(join(34720156..34721202,34721316..34721475, 34721561..34721706,34722211..34722701)) /locus_tag="TCM_025792" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.87 coverage" CDS complement(join(34721154..34721202,34721316..34721475, 34721561..34721699)) /locus_tag="TCM_025792" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10425.1" /translation="MVQISQFCHRIDGSDITNSKFESFNIHECPEKCQKIFSMVDAAP PNGFLDEAVTANSQAPGKPWELNPQRLATVQEEVTVEQRFRDAETIVEFALDEDGRLL RNGPSKQLKFSTS" gene complement(34723029..34725815) /locus_tag="TCM_025793" /note="dbxref CacaoGD:Thecc1EG025793" mRNA complement(join(34723029..34724290,34725057..34725815)) /locus_tag="TCM_025793" /product="Presenilin-1" /inference="alignment:exonerate- protein:2:ricco:29818.m000397" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014267t1" /inference="similar to AA sequence:ricco:29818.m000397" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g06210t00001" CDS complement(join(34723287..34724290,34725057..34725396)) /locus_tag="TCM_025793" /note="dbxref ricco:29818.m000397; paralog of Thecc1EG014267t1" /codon_start=1 /product="Presenilin-1" /protein_id="EOY10426.1" /db_xref="TAIR:AT1G08700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O64668" /translation="MESSILESIGQEIIGVMSPVSLCMLLVVLLVYSLSPSNPFSSSS PAPIRTAANLVYLENPSDTAAQKLEGALLNALVFVILIAIVTFVLVLLYYYNFTNFLK NYMRFSAFFVLGTMGGSIFLSIIQHFSIPIDSVTCFLLLFNFTVVGVLSVFSGGMPIV LRQGYMVLLGIIVATWFTKLPEWTTWALLVALALYDLVAVLAPGGPLKLLVELASSRD EELPALVYEARPTVSRNEGNQRSSLGLLVGGVSDSGSVELQAVSNGNARRDGSENGSS SEYAAIQVRSSENVEGERSPLVGHLRERYSSDSNSSEYSTVVCNRESEIVVDEEMSPL VDLLGMDDEREQPRRDGTGDSVIASRGIKLGLGDFVFYSVLVGRAAMYDLMTVYACYL AIISGLGCTLILLSVCRRALPALPISITLGVIFYFLTRLLMEPFVVGTATNLMMF" gene 34727158..34731240 /locus_tag="TCM_025794" /note="dbxref CacaoGD:Thecc1EG025794" mRNA join(34727158..34727506,34728149..34728311, 34728411..34728552,34730312..34730775) /locus_tag="TCM_025794" /product="F-box family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s06400.1" /inference="similar to AA sequence:Phytozome:GSVIVT01029918001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9136t1; inference alignment:Newbler:10:TSA:cgbaP1_g06002t00001" mRNA join(34727200..34727506,34727578..34727751, 34728149..34728311,34728411..34728552,34730327..34731240) /locus_tag="TCM_025794" /product="F-box family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s06400.1" /inference="similar to AA sequence:ricco:29818.m000396" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g06002t00001" CDS join(34727274..34727506,34727578..34727751, 34728149..34728311,34728411..34728552,34730327..34730355) /locus_tag="TCM_025794" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29818.m000396" /codon_start=1 /product="F-box family protein, putative isoform 1" /protein_id="EOY10427.1" /db_xref="TAIR:AT1G08710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SY82" /translation="MSSKNELPDELWRKILEIGIKSSNFIFKDLCSISISCRRLHRLS NEDSLWSHLLSVDFPNQISSPPSSSSPKSLYKIRFERERERKLLVYKRAVLRKESQVS EHLRKLREIEVRLSEEREKLKSAVSELSNLHKVSQASVALNVWQPEVVRGRQKQTVEQ CVVPVESRIHALEMEVKLCNQQLQVFDKAYRDENRRLDVAKEELQSMKYHPLRDYKLT SNESHENKMKRKKLKTCINSPDKQGKTT" CDS join(34727274..34727506,34728149..34728311, 34728411..34728552,34730312..34730355) /locus_tag="TCM_025794" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="F-box family protein, putative isoform 2" /protein_id="EOY10428.1" /db_xref="Phytozome:GSVIVT01029918001" /db_xref="TAIR:AT1G08710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TL20" /translation="MSSKNELPDELWRKILEIGIKSSNFIFKDLCSISISCRRLHRLS NEDSLWSHLLSVDFPNQISSPPSSSSPKSLYKISQASVALNVWQPEVVRGRQKQTVEQ CVVPVESRIHALEMEVKLCNQQLQVFDKAYRDENRRLDVAKEELQSMKYHPLRDYKLT SNESHENKMKRKKLKTCINFNVLTAPDKQGKTT" gene 34730962..34748400 /locus_tag="TCM_025795" /note="dbxref CacaoGD:Thecc1EG025795" mRNA join(34730962..34731033,34739704..34740248, 34740462..34740591,34740716..34741746,34748304..34748400) /locus_tag="TCM_025795" /product="Myb domain protein 60" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s06390.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013983t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s06390.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9132t2" gene 34732000..34733245 /locus_tag="TCM_025796" /note="dbxref CacaoGD:Thecc1EG025796" mRNA 34732000..34733245 /locus_tag="TCM_025796" /product="Ribonuclease H protein" /note="quality class is medium-utrpoor, express is medium, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.38 coverage" CDS 34732032..34732247 /locus_tag="TCM_025796" /codon_start=1 /product="Ribonuclease H protein" /protein_id="EOY10430.1" /translation="MLSLFLAHVAAGPAGYKREVLVGWQNPPQGWVEVNSDGALRRGT NLAAAGGALHGYKGYWLSGFAAKLGRC" mobile_element 34733482..34734137 /note="source:CACAO_M_S_E5285_F300_scaffold_1 17254 17943" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(34734206..34734587) /note="source:scaffold_5_CACTA_0608 5709 6053" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(34734614..34735036) /note="source:scaffold_5_CACTA_0608 4935 5413" /mobile_element_type="transposon:TIR/CACTA" mobile_element 34736991..34737085 /note="source:CACAO_M_E5326_F22_scaffold_2 3433 3518" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(34738475..34738712) /note="source:scaffold_9_CACTA_0946 17756 17994" /mobile_element_type="transposon:TIR/CACTA" CDS join(34740008..34740248,34740462..34740591, 34740716..34741481) /locus_tag="TCM_025795" /note="paralog of Thecc1EG013983t1" /codon_start=1 /product="Myb domain protein 60" /protein_id="EOY10429.1" /db_xref="Phytozome:POPTR_0013s06390.1" /db_xref="TAIR:AT1G08810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I660" /translation="MVMAPFESSFYSRKPRKKREERKRKEAKEVELESKAMGRPPCCD KVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIK RGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQSALE PNMAQDSTATSHQFVSKSLNERRSLDFGTPAASTTLRLNQTSSSSSTYASSTENISRL LEGWMRSSPKTNSSNSTTLLKEKWSHHQNNNSFDNNDSIGSTSAAAPTSLQGGYRRKA EQEGGELISHEEFESILSFENMNNVAWDKSTCDSTSKGTCQDSGNDDDKVNNVTMTPE TRKQKADQSNNNNPPLSFLEKWLLDESSGQVEEMNQMMELSSIF" mobile_element 34745213..34745298 /note="source:INTACT319_F3_scaffold_1-int 5699 5779" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(34745258..34745345) /note="source:scaffold_6_CACTA_0712 1389 1476" /mobile_element_type="transposon:TIR/CACTA" gene complement(34747948..34754796) /locus_tag="TCM_025797" /note="dbxref CacaoGD:Thecc1EG025797" mRNA complement(join(34747948..34748266,34748922..34749096, 34750304..34750384,34750747..34750806,34751772..34751821, 34751924..34751975,34752326..34752463,34752591..34752854, 34753026..34753083,34753391..34753500,34754399..34754796)) /locus_tag="TCM_025797" /product="Cysteine synthase 26 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g29740.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019851t1" /inference="similar to AA sequence:TAIR:AT3G03630.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1491t9; alternateUTRof:Thecc1EG025797t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9134t5; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1795t4" mRNA complement(join(34748244..34749096,34750304..34750384, 34750747..34750806,34751772..34751821,34751924..34751975, 34752326..34752463,34752591..34752854,34753026..34753083, 34753391..34753520,34754399..34754666)) /locus_tag="TCM_025797" /product="Cysteine synthase 26 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g29740.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019851t1" /inference="similar to AA sequence:Phytozome:GSVIVT01029906001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1795t7; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9134t5" mRNA complement(join(34748244..34748837,34748922..34749096, 34750304..34750384,34750747..34750806,34751772..34751821, 34751924..34751975,34752326..34752463,34752591..34752854, 34753026..34753083,34753391..34753497)) /locus_tag="TCM_025797" /product="Cysteine synthase 26 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g29740.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019851t1" /inference="similar to AA sequence:Phytozome:GSVIVT01029906001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1795t2; alternateUTRof:Thecc1EG025797t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9134t5" mRNA complement(join(34748321..34748837,34748922..34749096, 34750304..34750384,34750747..34750806,34751772..34751821, 34751924..34751975,34752326..34752463,34752591..34752854, 34753026..34753083,34753391..34753500,34754399..34754659)) /locus_tag="TCM_025797" /product="Cysteine synthase 26 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g29740.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019851t1" /inference="similar to AA sequence:TAIR:AT3G03630.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9134t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9134t5" CDS complement(join(34749007..34749096,34750304..34750384, 34750747..34750806,34751772..34751821,34751924..34751975, 34752326..34752463,34752591..34752854,34753026..34753083, 34753391..34753500,34754399..34754650)) /locus_tag="TCM_025797" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG019851t1" /codon_start=1 /product="Cysteine synthase 26 isoform 1" /protein_id="EOY10431.1" /db_xref="TAIR:AT3G03630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22682" /translation="MALSSSLLHLPPSKPFVFPAQRHRFPPFRASFNFSFSNKTKFNI QNRTFAATRRASSLVAEEEQEEQEQEEEFEAVNIAEDVTQLIGNTPMIYLNKVTEGCV ANIAAKLESMEPCRSVKDRIGLSMVSEAEDSGAISPGKTILVEPTSGNTGLGIAFVAA TKGYKLIVTMPASINLERRILLRAFGAEIVLTDPEKGLKGAVDKAAEIVLNTPNAFMF QQFDNMANTKVHFETTGPEIWEDTLGNVDIFVAGIGTGGTITGTGRYLKMMNKEIKVV GVEPAERSIISGENPGYLPSILDVKLLDEVIKVTNDEAVDMARRLALEEGLLVGISSG AAAAAAISLAKRPENAGKLIVVIFPSFGERYISTVLFRSIHEEVQQMQAR" CDS complement(join(34749007..34749096,34750304..34750384, 34750747..34750806,34751772..34751821,34751924..34751975, 34752326..34752463,34752591..34752854,34753026..34753083, 34753391..34753500,34754399..34754650)) /locus_tag="TCM_025797" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG019851t1" /codon_start=1 /product="Cysteine synthase 26 isoform 1" /protein_id="EOY10433.1" /db_xref="TAIR:AT3G03630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22682" /translation="MALSSSLLHLPPSKPFVFPAQRHRFPPFRASFNFSFSNKTKFNI QNRTFAATRRASSLVAEEEQEEQEQEEEFEAVNIAEDVTQLIGNTPMIYLNKVTEGCV ANIAAKLESMEPCRSVKDRIGLSMVSEAEDSGAISPGKTILVEPTSGNTGLGIAFVAA TKGYKLIVTMPASINLERRILLRAFGAEIVLTDPEKGLKGAVDKAAEIVLNTPNAFMF QQFDNMANTKVHFETTGPEIWEDTLGNVDIFVAGIGTGGTITGTGRYLKMMNKEIKVV GVEPAERSIISGENPGYLPSILDVKLLDEVIKVTNDEAVDMARRLALEEGLLVGISSG AAAAAAISLAKRPENAGKLIVVIFPSFGERYISTVLFRSIHEEVQQMQAR" CDS complement(join(34749007..34749096,34750304..34750384, 34750747..34750806,34751772..34751821,34751924..34751975, 34752326..34752463,34752591..34752854,34753026..34753083, 34753391..34753482)) /locus_tag="TCM_025797" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG019851t1" /codon_start=1 /product="Cysteine synthase 26 isoform 2" /protein_id="EOY10432.1" /db_xref="Phytozome:GSVIVT01029906001" /db_xref="TAIR:AT3G03630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22682" /translation="MIYLNKVTEGCVANIAAKLESMEPCRSVKDRIGLSMVSEAEDSG AISPGKTILVEPTSGNTGLGIAFVAATKGYKLIVTMPASINLERRILLRAFGAEIVLT DPEKGLKGAVDKAAEIVLNTPNAFMFQQFDNMANTKVHFETTGPEIWEDTLGNVDIFV AGIGTGGTITGTGRYLKMMNKEIKVVGVEPAERSIISGENPGYLPSILDVKLLDEVIK VTNDEAVDMARRLALEEGLLVGISSGAAAAAAISLAKRPENAGKLIVVIFPSFGERYI STVLFRSIHEEVQQMQAR" CDS complement(join(34749007..34749096,34750304..34750384, 34750747..34750806,34751772..34751821,34751924..34751975, 34752326..34752463,34752591..34752854,34753026..34753083, 34753391..34753482)) /locus_tag="TCM_025797" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG019851t1" /codon_start=1 /product="Cysteine synthase 26 isoform 2" /protein_id="EOY10434.1" /db_xref="Phytozome:GSVIVT01029906001" /db_xref="TAIR:AT3G03630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22682" /translation="MIYLNKVTEGCVANIAAKLESMEPCRSVKDRIGLSMVSEAEDSG AISPGKTILVEPTSGNTGLGIAFVAATKGYKLIVTMPASINLERRILLRAFGAEIVLT DPEKGLKGAVDKAAEIVLNTPNAFMFQQFDNMANTKVHFETTGPEIWEDTLGNVDIFV AGIGTGGTITGTGRYLKMMNKEIKVVGVEPAERSIISGENPGYLPSILDVKLLDEVIK VTNDEAVDMARRLALEEGLLVGISSGAAAAAAISLAKRPENAGKLIVVIFPSFGERYI STVLFRSIHEEVQQMQAR" gene complement(34755258..34759061) /locus_tag="TCM_025798" /note="dbxref CacaoGD:Thecc1EG025798" mRNA complement(join(34755258..34756053,34756660..34757818, 34758616..34759061)) /locus_tag="TCM_025798" /product="Catalytic, putative" /inference="alignment:exonerate- protein:2:Phytozome:Sb08g001860.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013996t1" /inference="similar to AA sequence:ricco:29818.m000393" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9123t1" CDS complement(join(34755499..34756053,34756660..34757637)) /locus_tag="TCM_025798" /note="dbxref ricco:29818.m000393; paralog of Thecc1EG013996t1" /codon_start=1 /product="Catalytic, putative" /protein_id="EOY10435.1" /db_xref="TAIR:AT3G45400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SY79" /translation="MAEKHGSSITRKSFFCLFMATTMLFVSSWLFVLRSTSRPNFFDR TLFPNEKLLTIFNNGHSESSSQSNVESSNGSSRAILANNEKDHEEGEGEEPPKREVGF QDKDGAANCNGNVKEPLKVFMYDLDPEFHFGLLGWKPEGGSSVWPDIRTRIPSYPGGL NLQHSIEYWLTLDLLASEFSDNPNNRAAIRVQNSSEADLIFVPFFSSLSYNRFSKVNP HQKKNRNKVLQAKLVRFLTAQKEWKRSGGRDHIVMAHHPNSMLDARMQLWPAMFILSD FGRYPINIANVDKDVIAPYKHVIKSYVNDTSDFDSRKTLLFFQGAIYRKDGGYARQEL YYLLRGEKDVHFSFGSVQKDGVNKASQGMHSSKFCLNIAGDTPSSNRLFDAIASHCVP VIISDEIELPYEDVLDYSQFCIFVRTSDALKERFLVNLVRSIKKEGWTRMWEKLKEVE SSFEFQYPSKEGDAVQMIWQAVARKAPAVKMKINKSRRFSRSVPRKERGLRTIPSPSN FW" gene complement(34759605..34764843) /locus_tag="TCM_025799" /note="dbxref CacaoGD:Thecc1EG025799" mRNA complement(join(34759605..34759704,34759792..34759829, 34760187..34760291,34760418..34760504,34761251..34761316, 34761840..34761929,34762089..34762169,34762599..34762676, 34762783..34762873,34762991..34763132,34764468..34764843)) /locus_tag="TCM_025799" /product="NADH:cytochrome B5 reductase 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29818.m000392" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041133t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s06360.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02172t00002" mRNA complement(join(34760051..34760291,34760418..34760504, 34761251..34761316,34762089..34762169,34762599..34762676, 34762783..34762873,34762991..34763132,34764468..34764843)) /locus_tag="TCM_025799" /product="NADH:cytochrome B5 reductase 1 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29818.m000392" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041133t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s06360.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:PASA:2:TSA:puevd3b024951t1a3; inference alignment:Newbler:10:TSA:cgbaB_g02172t00002" CDS complement(join(34760199..34760291,34760418..34760504, 34761251..34761316,34762089..34762169,34762599..34762676, 34762783..34762873,34762991..34763132,34764468..34764582)) /locus_tag="TCM_025799" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG041133t1" /codon_start=1 /product="NADH:cytochrome B5 reductase 1 isoform 2" /protein_id="EOY10437.1" /db_xref="Phytozome:POPTR_0013s06360.1" /db_xref="TAIR:AT5G17770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZNT1" /translation="MDLEFLQSVDVQILVGVAVAVLAIGVGAAYLFSSRKSKGCLDPE NYKEFKLVKRQQLSHNVAKFTFALPTPTSVLGLPIGQHISCRGKDSQGDEVIKPYTPT TLDSDVGSFELVIKMYPQGRMSHHFREMRVGDYLSVKGPKGRFRYQPGQVRAFGMIAG GSGITPMFQEELDSLVARYPGRFKVYYVLNQPPEVWDGGVGYVSKEIIQIHCPAPAPD IQILRCGPPPMNKAMAGHLDALGYSPEMQFQF" CDS complement(join(34760199..34760291,34760418..34760504, 34761251..34761316,34761840..34761929,34762089..34762169, 34762599..34762676,34762783..34762873,34762991..34763132, 34764468..34764582)) /locus_tag="TCM_025799" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG041133t1" /codon_start=1 /product="NADH:cytochrome B5 reductase 1 isoform 1" /protein_id="EOY10436.1" /db_xref="Phytozome:POPTR_0013s06360.1" /db_xref="TAIR:AT5G17770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZNT1" /translation="MDLEFLQSVDVQILVGVAVAVLAIGVGAAYLFSSRKSKGCLDPE NYKEFKLVKRQQLSHNVAKFTFALPTPTSVLGLPIGQHISCRGKDSQGDEVIKPYTPT TLDSDVGSFELVIKMYPQGRMSHHFREMRVGDYLSVKGPKGRFRYQPGQVRAFGMIAG GSGITPMFQVARAILENPKDTTNVHLIYANVTCEDILLKEELDSLVARYPGRFKVYYV LNQPPEVWDGGVGYVSKEIIQIHCPAPAPDIQILRCGPPPMNKAMAGHLDALGYSPEM QFQF" gene complement(34766388..34769167) /locus_tag="TCM_025800" /note="dbxref CacaoGD:Thecc1EG025800" mRNA complement(join(34766388..34767058,34767233..34767429, 34767759..34768105,34768533..34769167)) /locus_tag="TCM_025800" /product="Alpha/beta-Hydrolases superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029938001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015635t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400048864" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b024952t1a2; inference alignment:Newbler:10:TSA:cgbaL_g06912t00001" mRNA complement(join(34766439..34767058,34767233..34767429, 34767759..34768108,34768533..34769167)) /locus_tag="TCM_025800" /product="Alpha/beta-Hydrolases superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029938001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG015635t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400048864" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g06912t00001" CDS complement(join(34766737..34767058,34767233..34767429, 34767759..34768105,34768533..34768965)) /locus_tag="TCM_025800" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG015635t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein, putative isoform 2" /protein_id="EOY10439.1" /db_xref="Phytozome:PGSC0003DMP400048864" /db_xref="TAIR:AT5G17780.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HMX2" /translation="MSIANSVGKGTRKCGTILLDAITFFVFLFLDLLDAILCVVYKFL DEFFEGKASPCYCVKKGEQSADCADGERDLSETLYGRKNVFREMGFLGFARKREYRKK RDGFGGGGRLVNRWSDCGCESCVSWMKNGCQKLHVVVKELPQETDDSRGESAENVIFL HGFLSSSSLWTATVFKNLFEPVKGQYRLFAVDLLGFGRSPKPSDSMYTLNDHVEMIEK SVISPYRLNSFRLVAHSMGCIVAVALAAKYSKFVKSVTLVAPVYFPSAKDGSTLMALE TLAGKRLWPPLAFGQSVMSWYEHVGRFFCFLCCRNHRMWERLLKLLTQRRELDFMTVD LTRHTHHSAWHSMHNVICGGVKFMDDYLEILNRSTVKVCIIHGDQDPIVPLDCSVNIK MKFPYVELNIIQNADHGTVILGRKKDFTENLERIWASSQM" CDS complement(join(34766737..34767058,34767233..34767429, 34767759..34768108,34768533..34768965)) /locus_tag="TCM_025800" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG015635t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein, putative isoform 1" /protein_id="EOY10438.1" /db_xref="Phytozome:PGSC0003DMP400048864" /db_xref="TAIR:AT5G17780.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HMX2" /translation="MSIANSVGKGTRKCGTILLDAITFFVFLFLDLLDAILCVVYKFL DEFFEGKASPCYCVKKGEQSADCADGERDLSETLYGRKNVFREMGFLGFARKREYRKK RDGFGGGGRLVNRWSDCGCESCVSWMKNGCQKLHVVVKELPQVETDDSRGESAENVIF LHGFLSSSSLWTATVFKNLFEPVKGQYRLFAVDLLGFGRSPKPSDSMYTLNDHVEMIE KSVISPYRLNSFRLVAHSMGCIVAVALAAKYSKFVKSVTLVAPVYFPSAKDGSTLMAL ETLAGKRLWPPLAFGQSVMSWYEHVGRFFCFLCCRNHRMWERLLKLLTQRRELDFMTV DLTRHTHHSAWHSMHNVICGGVKFMDDYLEILNRSTVKVCIIHGDQDPIVPLDCSVNI KMKFPYVELNIIQNADHGTVILGRKKDFTENLERIWASSQM" mobile_element 34769854..34770389 /note="source:scaffold_3_CACTA_0398 3349 3875" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(34770305..34770400) /note="source:INTACT383F_F354_scaffold_3-int 4247 4337" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(34770404..34771019) /note="source:CACAO_Again_on_S_E228_scaffold_7 4 622" /mobile_element_type="transposon:TIR/hAT" gene 34771068..34772201 /locus_tag="TCM_025802" /note="dbxref CacaoGD:Thecc1EG025802" mRNA join(34771068..34771278,34771533..34772201) /locus_tag="TCM_025802" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.48 coverage" CDS join(34771240..34771278,34771533..34771709) /locus_tag="TCM_025802" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10440.1" /translation="MWRSEAAIGYPAKPPYINAMHVHLHVNIENTRVPVPLIKLRFSA VFGHLQSLFHCFHSLNDSIFRSFVLIS" assembly_gap 34772587..34782586 /estimated_length=10000 /gap_type="between scaffolds" mobile_element complement(34783083..34784182) /note="source:CACAO_M_E58877_F5_scaffold_9 8028 9118" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34783867..34785972 /note="source:CACAO_M_E69938_F9_scaffold_9 3535 5561" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34786237..34786764 /note="source:INTACT579_F10_scaffold_3-int 5223 5744" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(34786811..34788693) /locus_tag="TCM_025804" /note="dbxref CacaoGD:Thecc1EG025804" mRNA complement(join(34786811..34787112,34787309..34787394, 34787996..34788693)) /locus_tag="TCM_025804" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.39 coverage" CDS complement(join(34787089..34787112,34787309..34787394, 34787996..34788152)) /locus_tag="TCM_025804" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10441.1" /translation="MKCELKALKDNGTWSVIPLPTNSFAIGCKWVFKGKMNVDGAVER YKAWLVLKVATSIDYNHKLSRVTDSDKVADSTRYRQLIVTGIDA" mobile_element complement(34793470..34793567) /note="source:CACAO_M_S_E5162_F13_scaffold_1 5318 5361" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(34794034..34794089) /note="source:CACAO_Mutator_E1149_scaffold_5 4712 4767" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(34794104..34794206) /note="source:CACAO_MITE160_scaffold_10 293 408" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(34794207..34794253) /note="source:CACAO_on_E169_scaffold_5 437 595" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 34794879..34794962 /note="source:CACAO_M_E26982_F230_scaffold_4 1164 1229" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(34795871..34798433) /locus_tag="TCM_025805" /note="dbxref CacaoGD:Thecc1EG025805" mRNA complement(join(34795871..34796167,34796693..34796868, 34797708..34798433)) /locus_tag="TCM_025805" /product="WUSCHEL related homeobox 11" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s06310.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s06310.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaB_g13123t00001" CDS complement(join(34796150..34796167,34796693..34796868, 34797708..34798353)) /locus_tag="TCM_025805" /codon_start=1 /product="WUSCHEL related homeobox 11" /protein_id="EOY10442.1" /db_xref="Phytozome:POPTR_0013s06310.1" /db_xref="TAIR:AT3G03660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPV4" /translation="MCFVFFSYILNLGFSFKTIFLLLLFFITVMEDQASDPNSPSHGS ERSEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWF QNRRSRSRRRQRQLQASLAGDHQQRNQAQVPGGAIQYENSTAAMGFANCPSFANSSPS SFLVGSSSSCGVMGDDGFENLLSMSGQMGFQEIGQSSSVTSVLCPSETSNLHYQSGFI TVFINGVPTEVPRGPLDMKAMFGQDVVLVHSSGVPVPMNEFGFLLQSLQPGESYFLVS RPT" mobile_element 34800462..34800486 /note="source:INTACT415F_F22_scaffold_4-int 2174 2218" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34800487..34800546 /note="source:scaffold_6_CACTA_0712 1318 1378" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(34800490..34800571) /note="source:CACAO_M_S_E144734_F98_scaffold_10 498 576" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34800547..34800557 /note="source:INTACT415F_F22_scaffold_4-int 2219 2241" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(34804420..34804477) /note="source:CACAO_M_S_E52697_F28_scaffold_5 6053 6105" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34804430..34804490 /note="source:CACAO_M_E42514_F40_scaffold_5 142 206" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(34805481..34844123) /locus_tag="TCM_025806" /note="dbxref CacaoGD:Thecc1EG025806" mRNA complement(join(34805481..34806623,34843917..34844123)) /locus_tag="TCM_025806" /product="Peroxidase 44, putative" /inference="alignment:exonerate-protein:2:frave:gene26378" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041378t1" /inference="similar to AA sequence:frave:gene26378" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc8167t1" CDS complement(join(34805844..34806623,34843917..34844114)) /locus_tag="TCM_025806" /note="dbxref frave:gene26378; paralog of Thecc1EG041378t1" /codon_start=1 /product="Peroxidase 44, putative" /protein_id="EOY10443.1" /db_xref="TAIR:AT4G26010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SI53" /translation="MRLKITFLLLLFLLPLALANLTVGFYRSSCPRAESIVRAAVQRR FSRDRSITAALLRMHFHDCFVRGCDASILIDSTSRTPSEKDAGPNLTVRGFELIDEAK KDVEAACRSTVSCADIITLATRDAVFLAGGPFYAVPTGRRDGLVSDPDVVNLPGPTLS VSQAFQTFRAKNMTLNDMVTLLGAHTVGVAHCSFFLDRITSFQGTGRPDPTMDPALVA KLRNVCGVASASNPDPTAFLDQGTSFTVDNQFFKQIRLRRGVMQIDQELANDGLSRLI VSGFASNATLFRTRFAQAMVKMGRIQVLVGKAGEIRRNCRVFNPRRRAF" mobile_element 34806894..34807315 /note="source:CACAO_M_E29_F88_scaffold_1 2415 2829" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 34844329..34844401 /note="source:INTACT1373F_F385_scaffold_8-int 6936 7000" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(34844337..34844393) /note="source:CACAO_M_E57564_F369_scaffold_9 1384 1429" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(34844348..34844416) /note="source:scaffold_4_CACTA_0490 3083 3150" /mobile_element_type="transposon:TIR/CACTA" gene complement(34849158..34853078) /locus_tag="TCM_025807" /note="dbxref CacaoGD:Thecc1EG025807" mRNA complement(join(34849158..34851181,34852823..34853078)) /locus_tag="TCM_025807" /product="Cycling DOF factor 2, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s05720.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s06290.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9164t1; inference alignment:Newbler:10:TSA:cgbaB_g04732t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1367t2" mRNA complement(join(34849217..34851159,34852823..34853065)) /locus_tag="TCM_025807" /product="Cycling DOF factor 2, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s05720.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s06290.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04732t00001; inference alignment:Newbler:10:TSA:cgbaB_g04732t00001" CDS complement(join(34849771..34851159,34852823..34852897)) /locus_tag="TCM_025807" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Cycling DOF factor 2, putative isoform 1" /protein_id="EOY10444.1" /db_xref="Phytozome:POPTR_0013s06290.1" /db_xref="TAIR:AT5G39660.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I651" /translation="MNGGDPAFKLFGRKIAVPEPQIHAGDTSSEITNPETETSYTNTS GDPDKSITVENDKEEHQTSMKSNEIQTNSKLKEEQSETDSADQEKVFKKPDKVLPCPR CNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLASQYRQI IVSSDGVPMTRIETPDSANQQLLPPGESTTAFRPSMGNGTVLKFGAEAPLCESMETVL SLGDQKRSVEMGTVSCGEIREEPSSCGSSATPCSIPGNHLPGNVMQKERVGLAGPNEQ ITQHPPQCYPIPPWIFPWNPGMNNVAPMAVGQSSSERIGALNSSTSNAVQWCPTPMMA VPGFCPPNVPLQFVPAYWGCMPLWAASGGNVSFSGSNGCLSPSSSTSNSCCSGNGSPR LGKHSRETNFVEEQSEKCVLVPKTLRIDDPNEASRSPIWATLGIKPDQKDPLRRGKIF NAFDSKAEGKDHLLDGSHILEANPAALSRSHTFQEST" CDS complement(join(34849771..34851181,34852823..34852830)) /locus_tag="TCM_025807" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Cycling DOF factor 2, putative isoform 2" /protein_id="EOY10445.1" /db_xref="Phytozome:POPTR_0013s06290.1" /db_xref="TAIR:AT5G39660.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I651" /translation="MLGYFDFEFQDTSSEITNPETETSYTNTSGDPDKSITVENDKEE HQTSMKSNEIQTNSKLKEEQSETDSADQEKVFKKPDKVLPCPRCNSLDTKFCYFNNYN VNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLASQYRQIIVSSDGVPMTRIETP DSANQQLLPPGESTTAFRPSMGNGTVLKFGAEAPLCESMETVLSLGDQKRSVEMGTVS CGEIREEPSSCGSSATPCSIPGNHLPGNVMQKERVGLAGPNEQITQHPPQCYPIPPWI FPWNPGMNNVAPMAVGQSSSERIGALNSSTSNAVQWCPTPMMAVPGFCPPNVPLQFVP AYWGCMPLWAASGGNVSFSGSNGCLSPSSSTSNSCCSGNGSPRLGKHSRETNFVEEQS EKCVLVPKTLRIDDPNEASRSPIWATLGIKPDQKDPLRRGKIFNAFDSKAEGKDHLLD GSHILEANPAALSRSHTFQEST" mobile_element 34853003..34853079 /note="source:scaffold_8_CACTA_0854 1710 1783" /mobile_element_type="transposon:TIR/CACTA" gene 34854318..34856324 /locus_tag="TCM_025808" /note="dbxref CacaoGD:Thecc1EG025808" mRNA join(34854318..34854472,34855485..34855746, 34856047..34856324) /locus_tag="TCM_025808" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete" CDS join(34855564..34855746,34856047..34856106) /locus_tag="TCM_025808" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10446.1" /translation="MKFDSNGKVEDTMGIGFKIVPNLELKLGKKEAGMKSHICFPMGP AYVARAWSNQDKDLNAMDPALTVFALTPFLAQEAAF" gene complement(34858528..34859449) /locus_tag="TCM_025809" /note="dbxref CacaoGD:Thecc1EG025809" mRNA complement(join(34858528..34858838,34859114..34859172, 34859262..34859449)) /locus_tag="TCM_025809" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s06280.2" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00045t00001" CDS complement(join(34858692..34858838,34859114..34859172, 34859262..34859349)) /locus_tag="TCM_025809" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10447.1" /translation="MENKALVRLMILFLGFSYLLLSCVAVPTTRSLKSYKELPSSSVQ DLLAQDVMKLNEAEESTGEGDAIFSDERMLMESTDYPGTGANKNHDPKTPGRA" mobile_element 34861514..34861526 /note="source:CACAO_on_E454_scaffold_2 284 331" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 34861527..34861635 /note="source:CACAO_MITE_S131_scaffold_5 306 408" /mobile_element_type="transposon:TIR/MITE" mobile_element 34861636..34861650 /note="source:CACAO_on_E454_scaffold_2 332 397" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(34866188..34866236) /note="source:scaffold_8_CACTA_0850 10834 10882" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(34869656..34869707) /note="source:CACAO_Mariner_E220_scaffold_9 9022 9166" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(34869708..34869821) /note="source:scaffold_7_CACTA_0795 2856 2975" /mobile_element_type="transposon:TIR/CACTA" gene complement(34869950..34880592) /locus_tag="TCM_025810" /note="dbxref CacaoGD:Thecc1EG025810" mRNA complement(join(34869950..34870257,34871223..34871276, 34872211..34872300,34872878..34873015,34873482..34873562, 34874622..34874740,34874838..34874889,34875301..34875405, 34875524..34875685,34876141..34876221,34877025..34877111, 34877206..34877285,34877397..34877509,34877639..34877695, 34878893..34878969,34879062..34879150,34879443..34879515, 34879953..34880034,34880139..34880592)) /locus_tag="TCM_025810" /product="Cyclin/Brf1-like TBP-binding protein, putative isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT3G09360.1" /inference="similar to AA sequence:Phytozome:GSVIVT01029946001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9169t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9169t3" CDS complement(join(34870042..34870257,34871223..34871276, 34872211..34872300,34872878..34873015,34873482..34873562, 34874622..34874740,34874838..34874889,34875301..34875405, 34875524..34875685,34876141..34876221,34877025..34877111, 34877206..34877285,34877397..34877509,34877639..34877695, 34878893..34878969,34879062..34879150,34879443..34879515, 34879953..34880034,34880139..34880200)) /locus_tag="TCM_025810" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Cyclin/Brf1-like TBP-binding protein, putative isoform 1" /protein_id="EOY10448.1" /db_xref="Phytozome:GSVIVT01029946001" /db_xref="TAIR:AT3G09360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WVQ3" /translation="MVYCNNCSRNVSGERFYDGPLCCNFCGKVLEEYNFSSEPQFVKD SAGQSKLSGNFIKSVQDISDSRRRTLDKAFDDMRCMKDALSIDDYSDDVVETASRFYE IALERNFTRGRRTELVQASCLYLACRQKRKPFLLIDFSSYLSINVYELGSVYLQLCYV LYLADTKDLQKLIDPSIFIHKFTNVLIPEGNDEVVKTARDILASMKRDWMQTGRKPSG LCGAALYISALSHGLKCSKSDIIRVVHVCEATLTKRLVEFESTDSGSLTIEEFTEKER ELRTSSLTKKQPNIGSKEASAHEVLCKHMDRKPFAYGLCEECYEEFMKVSGGLDGGSD PPAFQRAEKERIAKLSIEENANRASGSPFASGPEKPESIGVSEGTTKKAAFDEGDNDK LPGVDGSGDESDNFSDIDDLEVDGYLHNEEEKRFKKIIWEEMNREYLEEQAAKEAAAA AAKEANMANYDKCPEDLQAAQELAAAAAAVVAKSRKERQQKRAAEAKNSGPPQTAAEA TRRMLARKRLSSKINYDALEKLFDEPVASSEKPKKQKNESHSDEKEDKVSKIGKEEGD LADEYNDVEGDGGGTKFDNNLDFENEVYDYDDDYGYDEY" mRNA complement(join(34870074..34870257,34872877..34873015, 34873482..34873562,34874622..34874740,34874838..34874889, 34875301..34875405,34875524..34875685,34876141..34876221, 34877025..34877111,34877206..34877285,34877397..34877509, 34877639..34877695,34878893..34878969,34879062..34879150, 34879443..34879515,34879953..34880034,34880139..34880506)) /locus_tag="TCM_025810" /product="Cyclin/Brf1-like TBP-binding protein, putative isoform 3" /inference="alignment:exonerate- protein:2:TAIR:AT3G09360.1" /inference="similar to AA sequence:Phytozome:GSVIVT01029946001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc989t10_C1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc989t9; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9169t3" CDS complement(join(34870205..34870257,34872877..34873015, 34873482..34873562,34874622..34874740,34874838..34874889, 34875301..34875405,34875524..34875685,34876141..34876221, 34877025..34877111,34877206..34877285,34877397..34877509, 34877639..34877695,34878893..34878969,34879062..34879150, 34879443..34879515,34879953..34880034,34880139..34880200)) /locus_tag="TCM_025810" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Cyclin/Brf1-like TBP-binding protein, putative isoform 3" /protein_id="EOY10450.1" /db_xref="Phytozome:GSVIVT01029946001" /db_xref="TAIR:AT3G09360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WVQ3" /translation="MVYCNNCSRNVSGERFYDGPLCCNFCGKVLEEYNFSSEPQFVKD SAGQSKLSGNFIKSVQDISDSRRRTLDKAFDDMRCMKDALSIDDYSDDVVETASRFYE IALERNFTRGRRTELVQASCLYLACRQKRKPFLLIDFSSYLSINVYELGSVYLQLCYV LYLADTKDLQKLIDPSIFIHKFTNVLIPEGNDEVVKTARDILASMKRDWMQTGRKPSG LCGAALYISALSHGLKCSKSDIIRVVHVCEATLTKRLVEFESTDSGSLTIEEFTEKER ELRTSSLTKKQPNIGSKEASAHEVLCKHMDRKPFAYGLCEECYEEFMKVSGGLDGGSD PPAFQRAEKERIAKLSIEENANRASGSPFASGPEKPESIGVSEGTTKKAAFDEGDNDK LPGVDGSGDESDNFSDIDDLEVDGYLHNEEEKRFKKIIWEEMNREYLEEQAAKEAAAA AAKEANMANYDKCPEDLQAAQELAAAAAAVVAKSRKGCFFRETQETKERITFR" mRNA complement(join(34870228..34870257,34871223..34871276, 34872211..34872295,34872878..34873015,34873482..34873562, 34874622..34874740,34874838..34874889,34875301..34875405, 34875524..34875685,34876141..34876221,34877025..34877111, 34877206..34877285,34877397..34877509,34877639..34877695, 34878893..34878969,34879062..34879150,34879443..34879515, 34879953..34880034,34880139..34880506)) /locus_tag="TCM_025810" /product="Cyclin/Brf1-like TBP-binding protein, putative isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT3G09360.1" /inference="similar to AA sequence:Phytozome:GSVIVT01029946001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1001t1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc989t9; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9169t3" CDS complement(join(34872275..34872295,34872878..34873015, 34873482..34873562,34874622..34874740,34874838..34874889, 34875301..34875405,34875524..34875685,34876141..34876221, 34877025..34877111,34877206..34877285,34877397..34877509, 34877639..34877695,34878893..34878969,34879062..34879150, 34879443..34879515,34879953..34880034,34880139..34880200)) /locus_tag="TCM_025810" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Cyclin/Brf1-like TBP-binding protein, putative isoform 2" /protein_id="EOY10449.1" /db_xref="Phytozome:GSVIVT01029946001" /db_xref="TAIR:AT3G09360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WVQ3" /translation="MVYCNNCSRNVSGERFYDGPLCCNFCGKVLEEYNFSSEPQFVKD SAGQSKLSGNFIKSVQDISDSRRRTLDKAFDDMRCMKDALSIDDYSDDVVETASRFYE IALERNFTRGRRTELVQASCLYLACRQKRKPFLLIDFSSYLSINVYELGSVYLQLCYV LYLADTKDLQKLIDPSIFIHKFTNVLIPEGNDEVVKTARDILASMKRDWMQTGRKPSG LCGAALYISALSHGLKCSKSDIIRVVHVCEATLTKRLVEFESTDSGSLTIEEFTEKER ELRTSSLTKKQPNIGSKEASAHEVLCKHMDRKPFAYGLCEECYEEFMKVSGGLDGGSD PPAFQRAEKERIAKLSIEENANRASGSPFASGPEKPESIGVSEGTTKKAAFDEGDNDK LPGVDGSGDESDNFSDIDDLEVDGYLHNEEEKRFKKIIWEEMNREYLEEQAAKEAAAA AAKEANMANYDKCPEDLQAAQELAAAAAAVVAKSRKATKASC" gene 34882918..34888796 /locus_tag="TCM_025811" /note="dbxref CacaoGD:Thecc1EG025811" mRNA join(34882918..34886041,34886900..34888796) /locus_tag="TCM_025811" /product="C2 calcium/lipid-binding plant phosphoribosyltransferase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s06270.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013830t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s06270.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9260t2" CDS 34883008..34886004 /locus_tag="TCM_025811" /note="paralog of Thecc1EG013830t1" /codon_start=1 /product="C2 calcium/lipid-binding plant phosphoribosyltransferase family protein" /protein_id="EOY10451.1" /db_xref="Phytozome:POPTR_0013s06270.1" /db_xref="TAIR:AT3G03680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SS68" /translation="MAENCTRKLIVEICNAKNLMPKDGQGTASAYAIVDFDGQRRRTK TKFRDLNPVWDENLEFLVHDIESMATEILEINLYNDKKTGKRSTFLGKVKLAGSVFVK AGDESLVYYPLEKRSVFSQIKGEIGVKVFYVDGETPPVAAEAAAEEKAEAAGEKPLEN PKPEEDKKEEKVGEKKEEEEKPKEESPKEEDKPNPPPAENSNPQDAAAAATPATTAPS AEVENPPLAHKEEPTKAAKDKAETGKSTELVINELELRSLSGDRSHAYDLVDRMPFLY VRVVKAKRANKEPACPAYGKLVIGTHSIKTKSQIDKDWDQVFAFDKDGLNSSSLEVSV WTEEENKEEEKEGATSLVENCLGTVSFDLQEVPKRVPPDSPLAPQWYSLESEKSPGND VMVAVWVGTQADEAFQEAWQSDSGGLIPETRAKVYLSPKLWYLRLTVIQTQDLQLGLG SEAKVRSPELYVKAQLGAQLFKTSRTQLGSAWNEDLVFVAAEPFEPFLVVTVEDVSNG QPVGQAKIHVPSLERRTDDKMELKSRWFNLVGGESKPYAGRIHVRACLEGGYHVLDEA AHVTSDVRAAAKQLAKAPIGLLEVGIRGASNLLPVKTKDGTRGTTDAYVVAKYGPKWI RTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNERYKRDEAGKPGRDVRVGKIRVR LSTLDTNRVYLNTYCLTVLLPNGAKKMGEIEIAVRFSCSSWLSLIQAYGSPMLPRMHY IRPLGPAQQDILRHTAMRIVTARLARSEPPLGQEVVQFMLDSDTHVWSMRRSKANWFR VVGCLSHAATLARWLDGIRTWTHPPTTVLVHVLLLAVVLCPHLLLPTVFMYAFLILAL RFRYRLRVPNNMDPRLSYVDAVGPDELDEEFDGLPTARSPDTIRIRYDRLRALAGRAQ TLLGDVAAQGERLEALFNWRDPRATGLFVVFCLFASLLFYVVPFKVFVLGSGFYYIRH PRFRDDMPSVPLNFFRRLPSLSDQIM" gene complement(34887434..34888869) /locus_tag="TCM_025813" /note="dbxref CacaoGD:Thecc1EG025813" mRNA complement(join(34887434..34888609,34888681..34888869)) /locus_tag="TCM_025813" /product="Isoprenylcysteine carboxyl methyltransferase (ICMT) family, putative" /inference="alignment:exonerate- protein:2:TAIR:AT5G23320.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007686t1" /inference="similar to AA sequence:ricco:27553.m000327" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9262t2" CDS complement(join(34888024..34888609,34888681..34888808)) /locus_tag="TCM_025813" /note="dbxref ricco:27553.m000327; paralog of Thecc1EG007686t1" /codon_start=1 /product="Isoprenylcysteine carboxyl methyltransferase (ICMT) family, putative" /protein_id="EOY10452.1" /db_xref="TAIR:AT5G08335.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TR53" /translation="MPKTLFPLSFLSSVLLRISRTFPLQDCNVFHQSSRSKVVQTHSN FNFREMNPLSQFLLAILFFHSSEYILAVAIHGISNVSLTSLLVSKEYALAMVFSLVEY YFEVLLFPGLKEHLWVSNLGLAMVVIGEIIRKLAIVTAGRSFTHLIKRYHEEHHKLVT DGVYGFVRHPSYCGFLVWSVGTQIMLCNPIATIGFAVVVWQFFAKRIPYEEYFLRQFF GADYEEYARRVPSGVPFVK" gene complement(34890324..34894203) /locus_tag="TCM_025814" /note="dbxref CacaoGD:Thecc1EG025814" mRNA complement(join(34890324..34891140,34892967..34893082, 34893237..34893312,34893455..34894203)) /locus_tag="TCM_025814" /product="Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s06250.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018321t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s06250.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1364t6" CDS complement(join(34890620..34891140,34892967..34893082, 34893237..34893312,34893455..34893944)) /locus_tag="TCM_025814" /note="paralog of Thecc1EG018321t1" /codon_start=1 /product="Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein" /protein_id="EOY10453.1" /db_xref="Phytozome:POPTR_0013s06250.1" /db_xref="TAIR:AT3G03690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94A75" /translation="MGIRIFMISFVLTSILFSLLYIPTKLSIPITSFNPMATLNIVQK SNRTYPVTFAYLISASKGDTVKLKRAIRALYHPGNQYLIHLDYEAPAREHRAIAEFVS NDPVFSLAGNVYIVGKPNLVTYRGPTMLATTLHAMSMLLRCCKWDWFINLSASDYPLV TQDDLIHAFSDLPKDLNFIQHTSHLGWKLSKRGKPIIIDPGLYSLNKSEIWWVIKQRT LPTAFKLYTGSAWTVISRSFAEYSIVGWDNLPRTLLLYYTNFVSSPEGYFQTLICNSE GYKNTTVNHDLHYITWDMPPKQHPRSLGLKDFRRMVLSSRPFARKFKRNDPVLDKIDR ELLKRRKGKFPYGGWCFENGKKQRACSGFQGENYGILKPGAGSRRLKTLLTKLLSARG FSKRQCRL" gene 34896958..34899084 /locus_tag="TCM_025815" /note="dbxref CacaoGD:Thecc1EG025815" mRNA join(34896958..34897171,34897438..34898580, 34898662..34899084) /locus_tag="TCM_025815" /product="Gd2b, putative" /inference="alignment:exonerate- protein:2:ricco:30072.m000936" /inference="similar to AA sequence:ricco:30072.m000936" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9171t2" CDS join(34897112..34897171,34897438..34898580, 34898662..34898796) /locus_tag="TCM_025815" /note="dbxref ricco:30072.m000936" /codon_start=1 /product="Gd2b, putative" /protein_id="EOY10454.1" /db_xref="TAIR:AT3G04440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SI60" /translation="MQKFHMQTQEQRIPSTSIIQRQEPSIKIEATVAGRFLRKIFQII FYIQLFLVSILVIALTIRGLINASNTHRFHPKKWYPPLLVSTASGGIVSFIWQWISFH YPSKAVKVAFWVSPLLTCAVGVLHVLIGSPVSLAIGTIAVVSGVIQSLYACWVNPRFA YATKILKVSTSFPPDGTTTFVTLSLIICVIYSAFLVTGIGGATATGTGLDILFIIFIL LSFTWSMQVIKNLLYVTISRVRYMNFACGVDMNTQIAFRDTIKHLVGSVCIGSALVPV FGTIRGSARAMSLVAGGTDEFLFSCANCYSGVASTLIKYGNRWGFVHVGVYNKGFVQA SANTWEMFQRAELISLIDSDLTGVFCFLSGLAVGSICTLAGGTWALIVHKSYATEVSI YAFLIGYFMCRIALAWQQACVSAYFVAYAENPQSLRFDSTIPVRIQELQRHRV" gene complement(34899424..34902088) /locus_tag="TCM_025816" /note="dbxref CacaoGD:Thecc1EG025816" mRNA complement(join(34899424..34899532,34900356..34900618, 34901672..34902007)) /locus_tag="TCM_025816" /product="DnaJ/Hsp40 cysteine-rich domain superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s05690.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s06220.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14659t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14659t1" mRNA complement(join(34899449..34899532,34899941..34899984, 34900356..34900617,34901671..34902088)) /locus_tag="TCM_025816" /product="DnaJ/Hsp40 cysteine-rich domain superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s05690.1" /inference="alignment:exonerate- protein:2:ricco:30072.m000937" /inference="similar to AA sequence:Phytozome:POPTR_0013s06220.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc709t5_C1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc709t5_C1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14659t1" CDS complement(join(34899465..34899532,34900356..34900618, 34901672..34901844)) /locus_tag="TCM_025816" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="DnaJ/Hsp40 cysteine-rich domain superfamily protein isoform 1" /protein_id="EOY10455.1" /db_xref="Phytozome:POPTR_0013s06220.1" /db_xref="TAIR:AT5G17840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPV1" /translation="MESAMKISSSIIFPINSTPKSNNYNKISYGFRYNGSNSIFKICA VYSNGSVSSSASYGAESRAVGDAHRRRSSLESLFCYDKPIPEERIEEPVGVSLAEKIV GDNLRCTDCQAKGAVLCTTCSGSGLYVDSILESQGIIVKVRCLGCGGSGNIMCSECGG RGHLGPK" CDS complement(join(34899476..34899532,34899941..34899984, 34900356..34900617,34901671..34901844)) /locus_tag="TCM_025816" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="DnaJ/Hsp40 cysteine-rich domain superfamily protein isoform 2" /protein_id="EOY10456.1" /db_xref="Phytozome:POPTR_0013s06220.1" /db_xref="TAIR:AT5G17840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPV1" /translation="MESAMKISSSIIFPINSTPKSNNYNKISYGFRYNGSNSIFKICA VYSNGSVSSSASYGAESRAVGDAHRRRSSLESLFCYDKPIPEERIEEPVGVSLAEKIV GDNLRCTDCQAKGAVLCTTCSGSGLYVDSILESQGIIVKVRCLGHFVLGGSRALLLCH VVEEVAILCAQNAVAEVI" mobile_element complement(34903335..34903387) /note="source:CACAO_M_S_E122136_F76_scaffold_10 13663 13714" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 34903558..34907191 /locus_tag="TCM_025817" /note="dbxref CacaoGD:Thecc1EG025817" mRNA join(34903558..34903766,34904058..34904294, 34904588..34907191) /locus_tag="TCM_025817" /product="Sodium/calcium exchanger family protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene26350" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025818t1" /inference="similar to AA sequence:ricco:30072.m000938" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.30 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9249t3" CDS join(34903621..34903766,34904058..34904294, 34904588..34906214) /locus_tag="TCM_025817" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30072.m000938; paralog of Thecc1EG025818t1" /codon_start=1 /product="Sodium/calcium exchanger family protein isoform 1" /protein_id="EOY10457.1" /db_xref="TAIR:AT5G17850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FKP2" /translation="MLRAKPHLPPWPSTSSNNDFLASFTLSSTEKLTFAVLLVPLLRL PTLNTRLPRVSFALALYPVFSSGWYWCNYETNLINYAPLAKSPSTSYKTKFSPTLLIS PNYGYPAPTENQEIVLRELFLQHMQRSSGNLVLSGYNSIGDNQQDCKLLEKLDDYKAK CSYLKSNNPCVSQGYVDYLYLFYCNFGRFPLLGHCLLVLWLLVLFYLLGNTASEYFCY SLESLSSLLKLSPTLAGVTLLSLGNGAPDVFSSIASFMDSGTEDVGLNTVLGGAFFVT CVVVGTISTLTHRKRVQVNKPAFVRDVCYILLVLASLSLILVYGKINLWGAMTFSSMY ILYVIIVYIMYIFWNSGGMENIDSDSSYNSGLSIPLLTGIEKVELDCLEEGNLEDNNG VGFKKRCFCLRLLAPCSMLLFILQMPLDLPRRLTIPIACEERWSKPVAVVSVALAPIL ISVLWDLQDDNLSFNTSLLVYGIGFLFGITFGVLAYLTTENSSPPKKCLFPWLAGGFI MSVIWSYIIAQELVGLLISIGYLTGISHSILGLTVLAWGNSLGDLITNLTMALNGGPK GAQVAISGCYAGPIFNILFGLGISMIGSAWFGYPSPVQIPKDPYLLETLGFQVAALLW ALLVLPMRDMRLDGVLGGGLFLIYLTSISLRLIQVVGPIQLHTVT" mRNA join(34904170..34904294,34904460..34906425) /locus_tag="TCM_025817" /product="Sodium/calcium exchanger family protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene26350" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025818t1" /inference="similar to AA sequence:ricco:30072.m000938" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.42 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc310t3_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9249t3" CDS 34904481..34906214 /locus_tag="TCM_025817" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30072.m000938; paralog of Thecc1EG025818t1" /codon_start=1 /product="Sodium/calcium exchanger family protein isoform 2" /protein_id="EOY10458.1" /db_xref="TAIR:AT5G17850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FKP2" /translation="MGTLVSISEHKSKRYIIFLNISFLLVACVFLMICFRSSGNLVLS GYNSIGDNQQDCKLLEKLDDYKAKCSYLKSNNPCVSQGYVDYLYLFYCNFGRFPLLGH CLLVLWLLVLFYLLGNTASEYFCYSLESLSSLLKLSPTLAGVTLLSLGNGAPDVFSSI ASFMDSGTEDVGLNTVLGGAFFVTCVVVGTISTLTHRKRVQVNKPAFVRDVCYILLVL ASLSLILVYGKINLWGAMTFSSMYILYVIIVYIMYIFWNSGGMENIDSDSSYNSGLSI PLLTGIEKVELDCLEEGNLEDNNGVGFKKRCFCLRLLAPCSMLLFILQMPLDLPRRLT IPIACEERWSKPVAVVSVALAPILISVLWDLQDDNLSFNTSLLVYGIGFLFGITFGVL AYLTTENSSPPKKCLFPWLAGGFIMSVIWSYIIAQELVGLLISIGYLTGISHSILGLT VLAWGNSLGDLITNLTMALNGGPKGAQVAISGCYAGPIFNILFGLGISMIGSAWFGYP SPVQIPKDPYLLETLGFQVAALLWALLVLPMRDMRLDGVLGGGLFLIYLTSISLRLIQ VVGPIQLHTVT" gene complement(34907193..34913777) /locus_tag="TCM_025818" /note="dbxref CacaoGD:Thecc1EG025818" mRNA complement(join(34907193..34908308,34912007..34913777)) /locus_tag="TCM_025818" /product="Sodium/potassium/calcium exchanger 6 precursor, putative" /inference="alignment:exonerate- protein:2:ricco:30072.m000939" /inference="similar to AA sequence:ricco:30072.m000939" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.73 coverage" CDS complement(join(34907902..34908308,34912007..34913693)) /locus_tag="TCM_025818" /note="dbxref ricco:30072.m000939" /codon_start=1 /product="Sodium/potassium/calcium exchanger 6 precursor, putative" /protein_id="EOY10459.1" /db_xref="TAIR:AT5G17860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8W102" /translation="MATPTSLFLPKRLPLFLNISFLFLLFFFIETYDSLGESNNGQIP IITNHSLIPQGSNSDGCAGLHDYTDYKTRCLYVKSEIGCRPKGYINYLQIFYCTCGRF PFLGHLVLLIWLFVLFYLLGDTAANYFCTSLESLSKMLKLSPAIAGVTLLSLGNGASD VFASIVSFTGSGNGGVGLNSVLGGAFFVSSAVVGVISILINRHRISVDEPSFIRDILF FLFSLSSLMFIIFIGQITLWGALSFVSIYFLYVGAVSASHFFNKKKDRKLNLIPVSSV SNSHDNFGEVGIPLLGYASDEKSVMRDKETLENQEETPKFFNFDSPSFYYFGKFLYLL ELPLYLPRRLTIPVINEERWSKPYAVISVTLAPLMLAELCNSQSEKKMGSKSSLVTYM IAGLVGMVFGNLAFVTTKKSSPPKRCQLPWLIGGFLMSVTWTYFTAEELVSLLVSFGN ILGISPSVLGLTVLAWGNSLGDLISNSAMAINGGADGAQTAISGCYAGPMFNTLVGLG VSFVWSSWSEYPSSFEIPRDPSLYETLGFLMVGLLWALVILPRKNMRLDRFLGGGNNS SMDQSVTIPYRRSVGMVPFQWESRPGTPRHHLVPRKEIVAPVRPPPASSTWNSQEFDK HCINMSRETRAGFWKKSKKNYQGKKKAKGNIDEFGCYMTSSSTNSRSSSSTSSKRTSS RLRSLAKVLVKWANF" gene complement(34915373..34920386) /locus_tag="TCM_025819" /note="dbxref CacaoGD:Thecc1EG025819" mRNA complement(join(34915373..34915937,34916025..34916082, 34917209..34917343,34917822..34918014,34918208..34918317, 34918470..34918582,34920206..34920386)) /locus_tag="TCM_025819" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029959001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9230t1; alternateUTRof:Thecc1EG025819t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9230t5; inference alignment:Newbler:10:TSA:cgbaL_g01964t00002" mRNA complement(join(34915373..34915937,34916025..34916082, 34917209..34917343,34917822..34918014,34918208..34918317, 34918470..34918582,34918683..34918823)) /locus_tag="TCM_025819" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029959001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9230t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9230t5; inference alignment:Newbler:10:TSA:cgbaL_g01964t00002" mRNA complement(join(34915373..34915937,34916025..34916082, 34916211..34916282,34917209..34917343,34917822..34918014, 34918208..34918317,34918470..34918582,34918683..34918823)) /locus_tag="TCM_025819" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029959001" /inference="similar to AA sequence:Phytozome:GSVIVT01029959001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9230t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9230t5" mRNA complement(join(34915389..34915937,34916025..34916082, 34916211..34916282,34917209..34917343,34917822..34918317, 34918470..34918582,34918683..34918823)) /locus_tag="TCM_025819" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029959001" /inference="similar to AA sequence:Phytozome:GSVIVT01029959001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc575t9; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9230t5; inference alignment:Newbler:10:TSA:cgbaL_g01964t00002" mRNA complement(join(34915389..34915937,34916025..34916082, 34916211..34916282,34917209..34917529)) /locus_tag="TCM_025819" /product="Uncharacterized protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029959001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc501t7; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9230t5; inference alignment:Newbler:10:TSA:cgbaL_g01964t00002" CDS complement(join(34915759..34915937,34916025..34916082, 34917209..34917343,34917822..34918014,34918208..34918215)) /locus_tag="TCM_025819" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY10462.1" /translation="MIREWRKSATYVQDSLAGELNASRSASSPMGHASEKKRKTSHAS DSIFHKQEPHGQASLGFLPFPTPAPSDDKGRGIVKSKTKIGYHGPYFEHLKEGADVIQ IRETKRLLHEDHERSLLLALAKLSHVSNDDDSRGEVRENKRQIVTHSRFHLQAGGLDS YPPESYPPKKSCTLKSYDPTHPVKLKVPRP" CDS complement(join(34915759..34915937,34916025..34916082, 34917209..34917343,34917822..34918014,34918208..34918215)) /locus_tag="TCM_025819" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY10463.1" /translation="MIREWRKSATYVQDSLAGELNASRSASSPMGHASEKKRKTSHAS DSIFHKQEPHGQASLGFLPFPTPAPSDDKGRGIVKSKTKIGYHGPYFEHLKEGADVIQ IRETKRLLHEDHERSLLLALAKLSHVSNDDDSRGEVRENKRQIVTHSRFHLQAGGLDS YPPESYPPKKSCTLKSYDPTHPVKLKVPRP" CDS complement(join(34915759..34915937,34916025..34916082, 34916211..34916282,34917209..34917343,34917822..34918014, 34918208..34918215)) /locus_tag="TCM_025819" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY10460.1" /db_xref="Phytozome:GSVIVT01029959001" /translation="MIREWRKSATYVQDSLAGELNASRSASSPMGHASEKKRKTSHAS DSIFHKQEPHGQASLGFLPFPTPAPSDDKGRGIVKSKTKIGYHGPYFEHLKEGADVIQ IRETKRLLHEIEKMIYGRKGTDQVQVEMAKLILNDHERSLLLALAKLSHVSNDDDSRG EVRENKRQIVTHSRFHLQAGGLDSYPPESYPPKKSCTLKSYDPTHPVKLKVPRP" CDS complement(join(34915759..34915937,34916025..34916082, 34916211..34916282,34917209..34917343,34917822..34918037)) /locus_tag="TCM_025819" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY10461.1" /db_xref="Phytozome:GSVIVT01029959001" /translation="MGGHKLSREWRKSATYVQDSLAGELNASRSASSPMGHASEKKRK TSHASDSIFHKQEPHGQASLGFLPFPTPAPSDDKGRGIVKSKTKIGYHGPYFEHLKEG ADVIQIRETKRLLHEIEKMIYGRKGTDQVQVEMAKLILNDHERSLLLALAKLSHVSND DDSRGEVRENKRQIVTHSRFHLQAGGLDSYPPESYPPKKSCTLKSYDPTHPVKLKVPR P" CDS complement(join(34915759..34915937,34916025..34916082, 34916211..34916282,34917209..34917397)) /locus_tag="TCM_025819" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 5" /protein_id="EOY10464.1" /translation="MFSLNSGRSIQVASHDLQAPSDDKGRGIVKSKTKIGYHGPYFEH LKEGADVIQIRETKRLLHEIEKMIYGRKGTDQVQVEMAKLILNDHERSLLLALAKLSH VSNDDDSRGEVRENKRQIVTHSRFHLQAGGLDSYPPESYPPKKSCTLKSYDPTHPVKL KVPRP" gene complement(34920714..34922083) /locus_tag="TCM_025821" /note="dbxref CacaoGD:Thecc1EG025821" mRNA complement(join(34920714..34921479,34921613..34922083)) /locus_tag="TCM_025821" /product="Sulfotransferase 2A, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01011259001.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025825t1" /inference="similar to AA sequence:ricco:29686.m000854" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9198t1" CDS complement(join(34920975..34921479,34921613..34921971)) /locus_tag="TCM_025821" /note="dbxref ricco:29686.m000854; paralog of Thecc1EG025825t1" /codon_start=1 /product="Sulfotransferase 2A, putative" /protein_id="EOY10465.1" /db_xref="TAIR:AT5G07010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TXM0" /translation="MDKTETFKDNIVPTPQDEAESWDDEFQELKRTLPKEEGWYETPL DFFQGFWCPSAAPKAVISFQKHFQALDSDIIVASVPKSGTTWLKALTFSIVNRNQFRG EENPLLSSGPHQLVPFLENPMDVFISLWFFVDKLHFEHLKPLDEAFELFCKGIYGSGP FFDHVLGYWKVSQENPNKILFLQYEDLKEDIIFHVKRMGKFLGFPFSEEEEKQGVVEE IARTCSFGNLKELDVNKNGVHIYGIPHHTFFRKAEVGDWSNYLTPAIVERLEKLIQEN LDGSGLAFKFS" mobile_element complement(34922167..34922253) /note="source:INTACT46_F120_scaffold_6-int 7290 7378" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34924775..34926461 /note="source:CACAO_M_E589_F323_scaffold_1 1760 3465" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34926462..34927719 /note="source:CACAO_M_E4304_F20_scaffold_2 144 1414" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(34926466..34927587) /note="source:INTACT806_F20_scaffold_6-int 6419 7559" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34927714..34927835 /note="source:INTACT384F_F20_scaffold_3-int 1292 1413" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34927839..34931681 /note="source:CACAO_M_E33977_F20_scaffold_4 1352 5117" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(34930612..34931800) /note="source:INTACT46_F120_scaffold_6-int 2920 4115" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34931664..34931912 /note="source:CACAO_M_E4304_F20_scaffold_2 10382 10585" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(34931972..34933895) /note="source:INTACT46_F120_scaffold_6-int 1 1953" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34940954..34941177 /note="source:INTACT135_F42_scaffold_4-int 6116 6339" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34944842..34945049 /note="source:INTACT135F_F90_scaffold_2-int 12973 13165" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(34946101..34946679) /note="source:scaffold_4_CACTA_0498 6578 7153" /mobile_element_type="transposon:TIR/CACTA" mobile_element 34946674..34946815 /note="source:CACAO_M_E44709_F9_scaffold_6 8889 9030" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(34947048..34947960) /note="source:CACAO_M_E52834_F33_scaffold_8 1677 2589" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34952298..34952859 /note="source:CACAO_M_E58843_F33_scaffold_9 2321 2882" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34952692..34952918 /note="source:CACAO_Mariner_E176_scaffold_6 1 227" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 34952859..34953463 /note="source:CACAO_M_E69760_F9_scaffold_9 7437 8041" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(34954860..34954933) /note="source:CACAO_M_E11415_F328_scaffold_2 8903 8973" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34954871..34955318 /note="source:CACAO_M_E69760_F9_scaffold_9 9085 9528" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34955420..34955495 /note="source:scaffold_9_CACTA_0934 6617 6692" /mobile_element_type="transposon:TIR/CACTA" mobile_element 34955421..34955511 /note="source:CACAO_M_E12297_F14_scaffold_3 19903 19998" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34959094..34959467 /note="source:CACAO_M_S_E146486_F42_scaffold_12 1 310" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(34959454..34959558) /note="source:CACAO_M_E12297_F14_scaffold_3 17008 17099" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34959468..34959532 /note="source:CACAO_M_E22680_F86_scaffold_3 2862 2926" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34959533..34959676 /note="source:CACAO_M_E51780_F33_scaffold_7 260 403" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34962328..34962802 /note="source:CACAO_M_S_E13904_F42_scaffold_2 2623 3097" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(34962803..34965263) /note="source:CACAO_M_E84109_F33_scaffold_10 124 2556" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34965264..34966284 /note="source:CACAO_M_E59205_F86_scaffold_9 1 1021" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34966385..34967774 /note="source:CACAO_M_E57248_F86_scaffold_8 1034 2423" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(34967875..34968371) /note="source:INTACT543_F86_scaffold_5-int 6480 6976" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34968371..34968498 /note="source:CACAO_M_E51780_F33_scaffold_7 2811 2938" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(34970229..34971982) /locus_tag="TCM_025825" /note="dbxref CacaoGD:Thecc1EG025825" mRNA complement(join(34970229..34970560,34970678..34970764, 34970939..34971982)) /locus_tag="TCM_025825" /product="Sulfotransferase 2A, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01011259001.5" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025835t1" /inference="similar to AA sequence:Phytozome:GSVIVT01011259001" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2882t4" CDS complement(join(34970442..34970560,34970678..34970764, 34970939..34971935)) /locus_tag="TCM_025825" /note="paralog of Thecc1EG025835t1" /codon_start=1 /product="Sulfotransferase 2A, putative" /protein_id="EOY10466.1" /db_xref="Phytozome:GSVIVT01011259001" /db_xref="TAIR:AT5G07010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TXM0" /translation="MDTTEMISKDIVSIVSQDKEEPWDDDEFQELVQTLPKEKNWYGT HLYFYQGFWCASRVFRAMICFQKHFQALDSDIFLTSIPKSGTTWLKALTFSIVNRNQF AREENPLLSSNPHQLVPVFEYDLYLNNPCPDLENSCPYQPRMFSTHLPYAFLPPSIKD SNSKIVYICRNPMDMFISLWFFTDKLRPDNVEPLSLDEAFEKFCQGMHDFGPFFDHVL GYWKASQENPNRILFLQYEDLKENINFHIKKLGKFLGFPFSEVEEEQGVVEEIARMCS FGNLKELDVNKNGMHTFGIAHNTLFRKAEVGNWCNYLTPSMVEYFKKLIQDKLDKSEV VFARTLGEVNKVIDSLAKLGVDRVEMFCIWLGSVTKRQDNMSNNGSQRAALFLWLVAS DRLGMEDA" mobile_element complement(34972887..34973056) /note="source:scaffold_3_CACTA_0382 1 173" /mobile_element_type="transposon:TIR/CACTA" mobile_element 34972932..34974859 /note="source:CACAO_M_S_E52962_F231_scaffold_5 169 2125" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(34974883..34976889) /note="source:INTACT666_F293_scaffold_9-int 1070 3060" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34977552..34978025 /note="source:INTACT700_F304_scaffold_7-int 17758 18190" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(34978026..34978726) /note="source:CACAO_M_E3935_F390_scaffold_1 13994 15020" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34978360..34989896 /note="source:INTACT1391F_F387_scaffold_8-int 210 11708" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(34978738..35416985) /locus_tag="TCM_025827" /note="dbxref CacaoGD:Thecc1EG025827" mRNA complement(join(34978738..34978992,35415878..35416447, 35416498..35416985)) /locus_tag="TCM_025827" /product="RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038503t1" /inference="similar to AA sequence:Phytozome:Glyma06g23600.1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00004t00019_G2" gene complement(34980760..34986933) /locus_tag="TCM_025829" /note="dbxref CacaoGD:Thecc1EG025829" mRNA complement(join(34980760..34981537,34981736..34981919, 34982046..34982306,34982540..34982754,34983007..34983100, 34986646..34986933)) /locus_tag="TCM_025829" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019170t1" /inference="similar to AA sequence:Phytozome:Glyma15g33030.1" /note="quality class is medium-expresste, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.40 coverage" CDS complement(join(34981332..34981537,34981736..34981919, 34982046..34982306,34982540..34982754,34983007..34983100, 34986646..34986906)) /locus_tag="TCM_025829" /note="paralog of Thecc1EG019170t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10468.1" /db_xref="Phytozome:Glyma15g33030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C6G8" /translation="MGDEHSERMDKIEKKQEEIMGQLSKILELMSTDKGKRVAGIFGA PEDVQQTEANTDPVYPPRFTPPPARNASIPMASIGQYPFFGISLYIFQFPLPSKIPNN ECEDDSDSGFEVNFEKDMPRLNIDIVAHKLPLKPECKPIKQKLRRIKPEMFLKIKEEV KKQFDAGFLEVAKYPEWVANIVPMPKKNGKNAGATYQQAMVTFFHDMMHREVEVYVDD MIVKARKIEDHTTNLKRLFKRLREFQLRLNPAKCIFGVTSKKLLGFVINKRGTEVDPD KLLRKHNLGAWNEECQVTFDNVKEYLLSLLVLVPPVAERPLLLYLTVNEGSMGCVLGQ HDETGKVARWQMLLSEYDIVYVSQKAIKGSAITDFLAKRVEKDYEPMEFEFSDEDLMS ICQTSEEKSEKKEN" mobile_element complement(34989897..34991894) /note="source:INTACT666_F293_scaffold_9-int 16034 18111" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34993175..34993369 /note="source:INTACT1427F_F390_scaffold_9-int 2798 2987" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34993353..34993783 /note="source:CACAO_M_E35511_F5_scaffold_5 18241 18679" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 34995955..34996160 /note="source:INTACT135F_F90_scaffold_2-int 12973 13165" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 35000395..35001214 /note="source:CACAO_M_E34091_F323_scaffold_4 1 819" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 35001315..35003382 /note="source:CACAO_M_E59669_F323_scaffold_9 1375 3440" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(35003561..35003879) /note="source:CACAO_M_E84109_F33_scaffold_10 2691 3094" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(35003845..35003953) /note="source:CACAO_M_S_E51686_F83_scaffold_4 2836 2943" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(35003954..35006590) /note="source:CACAO_M_E84109_F33_scaffold_10 124 2695" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 35006591..35009373 /note="source:CACAO_M_E59205_F86_scaffold_9 1 2766" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 35019360..35026108 /locus_tag="TCM_025833" /note="dbxref CacaoGD:Thecc1EG025833" mRNA join(35019360..35019694,35020071..35020193, 35021246..35021367,35021881..35022483,35022750..35022964, 35023266..35023505,35023598..35023796,35023929..35024524, 35026058..35026108) /locus_tag="TCM_025833" /product="Amidase family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29756.m000503" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006681t1" /inference="similar to AA sequence:frave:gene07602" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9238t3" mRNA join(35019465..35019694,35020071..35020193, 35021246..35021367,35021881..35021907,35021996..35022483, 35022750..35022964,35023266..35023505,35023598..35023796, 35023929..35024497) /locus_tag="TCM_025833" /product="Amidase family protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:29756.m000503" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006681t1" /inference="similar to AA sequence:Phytozome:GSVIVT01024068001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9238t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9238t3" mRNA join(35019465..35019694,35020071..35020193, 35021246..35021367,35021881..35021907,35022001..35022483, 35022750..35022964,35023266..35023505,35023598..35023796, 35023929..35024497) /locus_tag="TCM_025833" /product="Amidase family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29756.m000503" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006681t1" /inference="similar to AA sequence:frave:gene07602" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9238t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9238t3" mRNA join(35019465..35019694,35020071..35020193, 35021881..35021907,35021996..35022483,35022750..35022964, 35023266..35023505,35023598..35023796,35023929..35024497) /locus_tag="TCM_025833" /product="Amidase family protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:29756.m000503" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006681t1" /inference="similar to AA sequence:Phytozome:GSVIVT01024068001" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9238t1; alternateUTRof:Thecc1EG025833t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9238t3" mRNA join(35019465..35019694,35020071..35020193, 35021881..35021907,35022001..35022483,35022750..35022964, 35023266..35023505,35023598..35023796,35023929..35024497) /locus_tag="TCM_025833" /product="Amidase family protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:29756.m000503" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006681t1" /inference="similar to AA sequence:frave:gene07602" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9238t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9238t3" CDS join(35020077..35020193,35021881..35021907, 35022001..35022483,35022750..35022964,35023266..35023505, 35023598..35023796,35023929..35024285) /locus_tag="TCM_025833" /note="encoded by transcript variant 4; alternatively spliced; dbxref frave:gene07602; paralog of Thecc1EG006681t1" /codon_start=1 /product="Amidase family protein isoform 4" /protein_id="EOY10472.1" /db_xref="TAIR:AT4G34880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2A9N4" /translation="MGIFLSTPKTQKFSEDGENDRVRYGLSSTQGWPATMEDAAKRVE RGNQSSSGSHSKPNHAFSIKEATVHDLQLAFERCQLTSRQLVEFYLGEIHRLNPLLRG VIEVNPDALYQADNADRERKAKAPGSLGGLHGIPVLLKDNIATKDKMSTTAGSLALLG SVVPRDAGVVTKLRKAGAIILGKASLSEWAHFRDNRAPSGWCARSGQGKNPYNLSADP CGSSSGSAISVAANMAAVSLGTETDGSILCPSSNNAIVGIKPTVGLTSRAGVIPITPR QDTVGPMCRTVADAVHVLDAIAGLDYNDKATIEASKYIPGGGYKQFLKPYGLKGKRLG LLRNIFFHFDNGSIFAEAFERHFSTLRQGGAVLVENLDESKFLAAYSSNTDFESVAMN AEFKLALNSYLKELVVSPVRSLKDIIAFNKKFSDLENTKEYGQQLFLDAEATNGIGKK EKEALLHLAKMSRDGLEKLMSENKLDVLLSPFSSASSVLAKGGYPGIIVPAGHDTEGV PFGICFAGLKGSEPTLIEIAYAFEQATRIRRPPPFTP" mRNA join(35020165..35020193,35021881..35021907, 35021996..35022483,35022750..35022964,35023278..35023505, 35023598..35023796,35023929..35024496) /locus_tag="TCM_025833" /product="Amidase family protein isoform 7" /inference="alignment:exonerate- protein:2:ricco:29756.m000503" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006681t1" /inference="similar to AA sequence:Phytozome:GSVIVT01024068001" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc492t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9238t3" mRNA join(35020168..35020193,35021246..35021367, 35021881..35021907,35022001..35022483,35022750..35022964, 35023278..35023505,35023598..35023796,35023929..35025047) /locus_tag="TCM_025833" /product="Amidase family protein isoform 5" /inference="alignment:exonerate- protein:2:ricco:29756.m000503" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006681t1" /inference="similar to AA sequence:frave:gene07602" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc497t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9238t3" CDS join(35020169..35020193,35021246..35021367, 35021881..35021907,35022001..35022483,35022750..35022964, 35023266..35023505,35023598..35023796,35023929..35024285) /locus_tag="TCM_025833" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene07602; paralog of Thecc1EG006681t1" /codon_start=1 /product="Amidase family protein isoform 2" /protein_id="EOY10470.1" /db_xref="TAIR:AT4G34880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2A9N4" /translation="MACNYGRCYVAPVFGIGGLSIFLMLLFSHCQSFVFCVGCQRRQD GLSTQAKRVERGNQSSSGSHSKPNHAFSIKEATVHDLQLAFERCQLTSRQLVEFYLGE IHRLNPLLRGVIEVNPDALYQADNADRERKAKAPGSLGGLHGIPVLLKDNIATKDKMS TTAGSLALLGSVVPRDAGVVTKLRKAGAIILGKASLSEWAHFRDNRAPSGWCARSGQG KNPYNLSADPCGSSSGSAISVAANMAAVSLGTETDGSILCPSSNNAIVGIKPTVGLTS RAGVIPITPRQDTVGPMCRTVADAVHVLDAIAGLDYNDKATIEASKYIPGGGYKQFLK PYGLKGKRLGLLRNIFFHFDNGSIFAEAFERHFSTLRQGGAVLVENLDESKFLAAYSS NTDFESVAMNAEFKLALNSYLKELVVSPVRSLKDIIAFNKKFSDLENTKEYGQQLFLD AEATNGIGKKEKEALLHLAKMSRDGLEKLMSENKLDVLLSPFSSASSVLAKGGYPGII VPAGHDTEGVPFGICFAGLKGSEPTLIEIAYAFEQATRIRRPPPFTP" CDS join(35020169..35020193,35021246..35021367, 35021881..35021907,35022001..35022483,35022750..35022964, 35023278..35023505,35023598..35023796,35023929..35024285) /locus_tag="TCM_025833" /note="encoded by transcript variant 5; alternatively spliced; dbxref frave:gene07602; paralog of Thecc1EG006681t1" /codon_start=1 /product="Amidase family protein isoform 5" /protein_id="EOY10473.1" /db_xref="TAIR:AT4G34880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2A9N4" /translation="MACNYGRCYVAPVFGIGGLSIFLMLLFSHCQSFVFCVGCQRRQD GLSTQAKRVERGNQSSSGSHSKPNHAFSIKEATVHDLQLAFERCQLTSRQLVEFYLGE IHRLNPLLRGVIEVNPDALYQADNADRERKAKAPGSLGGLHGIPVLLKDNIATKDKMS TTAGSLALLGSVVPRDAGVVTKLRKAGAIILGKASLSEWAHFRDNRAPSGWCARSGQG KNPYNLSADPCGSSSGSAISVAANMAAVSLGTETDGSILCPSSNNAIVGIKPTVGLTS RAGVIPITPRQDTVGTVADAVHVLDAIAGLDYNDKATIEASKYIPGGGYKQFLKPYGL KGKRLGLLRNIFFHFDNGSIFAEAFERHFSTLRQGGAVLVENLDESKFLAAYSSNTDF ESVAMNAEFKLALNSYLKELVVSPVRSLKDIIAFNKKFSDLENTKEYGQQLFLDAEAT NGIGKKEKEALLHLAKMSRDGLEKLMSENKLDVLLSPFSSASSVLAKGGYPGIIVPAG HDTEGVPFGICFAGLKGSEPTLIEIAYAFEQATRIRRPPPFTP" CDS join(35021926..35022483,35022750..35022964, 35023266..35023505,35023598..35023796,35023929..35024285) /locus_tag="TCM_025833" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene07602; paralog of Thecc1EG006681t1" /codon_start=1 /product="Amidase family protein isoform 1" /protein_id="EOY10469.1" /db_xref="TAIR:AT4G34880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2A9N4" /translation="MASTKYSPLSFPLFLTLTFLFLQAKSSSGSHSKPNHAFSIKEAT VHDLQLAFERCQLTSRQLVEFYLGEIHRLNPLLRGVIEVNPDALYQADNADRERKAKA PGSLGGLHGIPVLLKDNIATKDKMSTTAGSLALLGSVVPRDAGVVTKLRKAGAIILGK ASLSEWAHFRDNRAPSGWCARSGQGKNPYNLSADPCGSSSGSAISVAANMAAVSLGTE TDGSILCPSSNNAIVGIKPTVGLTSRAGVIPITPRQDTVGPMCRTVADAVHVLDAIAG LDYNDKATIEASKYIPGGGYKQFLKPYGLKGKRLGLLRNIFFHFDNGSIFAEAFERHF STLRQGGAVLVENLDESKFLAAYSSNTDFESVAMNAEFKLALNSYLKELVVSPVRSLK DIIAFNKKFSDLENTKEYGQQLFLDAEATNGIGKKEKEALLHLAKMSRDGLEKLMSEN KLDVLLSPFSSASSVLAKGGYPGIIVPAGHDTEGVPFGICFAGLKGSEPTLIEIAYAF EQATRIRRPPPFTP" CDS join(35022301..35022483,35022750..35022964, 35023266..35023505,35023598..35023796,35023929..35024285) /locus_tag="TCM_025833" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG006681t1" /codon_start=1 /product="Amidase family protein isoform 3" /protein_id="EOY10471.1" /db_xref="Phytozome:GSVIVT01024068001" /db_xref="TAIR:AT4G34880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HRA0" /translation="MSTTAGSLALLGSVVPRDAGVVTKLRKAGAIILGKASLSEWAHF RDNRAPSGWCARSGQGKNPYNLSADPCGSSSGSAISVAANMAAVSLGTETDGSILCPS SNNAIVGIKPTVGLTSRAGVIPITPRQDTVGPMCRTVADAVHVLDAIAGLDYNDKATI EASKYIPGGGYKQFLKPYGLKGKRLGLLRNIFFHFDNGSIFAEAFERHFSTLRQGGAV LVENLDESKFLAAYSSNTDFESVAMNAEFKLALNSYLKELVVSPVRSLKDIIAFNKKF SDLENTKEYGQQLFLDAEATNGIGKKEKEALLHLAKMSRDGLEKLMSENKLDVLLSPF SSASSVLAKGGYPGIIVPAGHDTEGVPFGICFAGLKGSEPTLIEIAYAFEQATRIRRP PPFTP" CDS join(35022301..35022483,35022750..35022964, 35023266..35023505,35023598..35023796,35023929..35024285) /locus_tag="TCM_025833" /note="encoded by transcript variant 6; alternatively spliced; paralog of Thecc1EG006681t1" /codon_start=1 /product="Amidase family protein isoform 3" /protein_id="EOY10474.1" /db_xref="Phytozome:GSVIVT01024068001" /db_xref="TAIR:AT4G34880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HRA0" /translation="MSTTAGSLALLGSVVPRDAGVVTKLRKAGAIILGKASLSEWAHF RDNRAPSGWCARSGQGKNPYNLSADPCGSSSGSAISVAANMAAVSLGTETDGSILCPS SNNAIVGIKPTVGLTSRAGVIPITPRQDTVGPMCRTVADAVHVLDAIAGLDYNDKATI EASKYIPGGGYKQFLKPYGLKGKRLGLLRNIFFHFDNGSIFAEAFERHFSTLRQGGAV LVENLDESKFLAAYSSNTDFESVAMNAEFKLALNSYLKELVVSPVRSLKDIIAFNKKF SDLENTKEYGQQLFLDAEATNGIGKKEKEALLHLAKMSRDGLEKLMSENKLDVLLSPF SSASSVLAKGGYPGIIVPAGHDTEGVPFGICFAGLKGSEPTLIEIAYAFEQATRIRRP PPFTP" CDS join(35022301..35022483,35022750..35022964, 35023278..35023505,35023598..35023796,35023929..35024285) /locus_tag="TCM_025833" /note="encoded by transcript variant 7; alternatively spliced; paralog of Thecc1EG006681t1" /codon_start=1 /product="Amidase family protein isoform 7" /protein_id="EOY10475.1" /db_xref="Phytozome:GSVIVT01024068001" /db_xref="TAIR:AT4G34880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HRA0" /translation="MSTTAGSLALLGSVVPRDAGVVTKLRKAGAIILGKASLSEWAHF RDNRAPSGWCARSGQGKNPYNLSADPCGSSSGSAISVAANMAAVSLGTETDGSILCPS SNNAIVGIKPTVGLTSRAGVIPITPRQDTVGTVADAVHVLDAIAGLDYNDKATIEASK YIPGGGYKQFLKPYGLKGKRLGLLRNIFFHFDNGSIFAEAFERHFSTLRQGGAVLVEN LDESKFLAAYSSNTDFESVAMNAEFKLALNSYLKELVVSPVRSLKDIIAFNKKFSDLE NTKEYGQQLFLDAEATNGIGKKEKEALLHLAKMSRDGLEKLMSENKLDVLLSPFSSAS SVLAKGGYPGIIVPAGHDTEGVPFGICFAGLKGSEPTLIEIAYAFEQATRIRRPPPFT P" gene complement(35025400..35027700) /locus_tag="TCM_025835" /note="dbxref CacaoGD:Thecc1EG025835" mRNA complement(35025400..35027700) /locus_tag="TCM_025835" /product="Sulfotransferase 2A, putative" /inference="alignment:exonerate- protein:2:ricco:29609.m000598.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025825t1" /inference="similar to AA sequence:Phytozome:GSVIVT01011259001" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.37 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc2859t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2435t4" CDS complement(35026198..35027217) /locus_tag="TCM_025835" /note="paralog of Thecc1EG025825t1" /codon_start=1 /product="Sulfotransferase 2A, putative" /protein_id="EOY10476.1" /db_xref="Phytozome:GSVIVT01011259001" /db_xref="TAIR:AT5G07010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TXM0" /translation="MEAIENSKSKLSNTQGSEESWDDEEVQELVQTLSKERNWYGNHL YFYQGFWCTSRVLRAMISFQKHFQALDNDIFLTSLPKCGTTWMKALIFTIVNRNHFEL KNNPLLSLGPHQAVPYLELDLYLKNHSPDLENIPQPRIFSTHTPYASLPPSIKECSTP KIVYICRNPMDMFISYWHFTDILRSENVDPLPLDEAFEMFCQGIHGFGPFPDHVLGYW KAKQENPNNIMFLKYEDLKKDIVFHVKKLANFLGFPFSKEEERQGEAEEIAMLCSFEN LKGMEVNKSGKQPFGAPNTAFFRKGEVGDWSNYLTPSMVERLQKLVQEKLNKSDLTFK YLSSK" gene 35027390..35052161 /locus_tag="TCM_025836" /note="dbxref CacaoGD:Thecc1EG025836" mRNA join(35027390..35027503,35034194..35034731, 35035298..35035366,35035511..35035617,35035700..35035742, 35036552..35036635,35037944..35038008,35038114..35038270, 35041218..35041274,35042299..35042412,35043024..35043287, 35043408..35043479,35044125..35044238,35044553..35044645, 35045726..35045904,35046048..35046231,35046380..35046427, 35046622..35046694,35047367..35047440,35047542..35047649, 35047733..35047827,35048410..35048473,35048935..35048988, 35049094..35049135,35049632..35050109,35050583..35051003, 35052111..35052161) /locus_tag="TCM_025836" /product="Polyribonucleotide nucleotidyltransferase isoform 1" /inference="alignment:exonerate- protein:2:ricco:30072.m000941" /inference="similar to AA sequence:ricco:30072.m000941" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9242t3" mRNA join(35027390..35027503,35034194..35034731, 35035298..35035366,35035511..35035617,35035700..35035742, 35036552..35036635,35037944..35038008,35038114..35038270, 35041218..35041274,35042299..35042412,35043024..35043287, 35043408..35043479,35044125..35044238,35044553..35044645, 35045726..35045904,35046048..35046231,35046380..35046427, 35046622..35046694,35047367..35047440,35047542..35047649, 35047733..35047827,35048410..35048473,35048935..35048988, 35049094..35049135,35049632..35051024) /locus_tag="TCM_025836" /product="Polyribonucleotide nucleotidyltransferase isoform 1" /inference="alignment:exonerate- protein:2:ricco:30072.m000941" /inference="similar to AA sequence:ricco:30072.m000941" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:PASA:2:TSA:puevd3b024984t1a3; alternateUTRof:Thecc1EG025836t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9242t3" mRNA join(35027390..35027503,35034194..35034731, 35035298..35035366,35035590..35035617,35035723..35035742, 35036552..35036635,35037944..35038008,35038114..35038270, 35041218..35041274,35042299..35042412,35043024..35043287, 35043408..35043479,35044125..35044238,35044553..35044645, 35045726..35045904,35046048..35046231,35046380..35046427, 35046622..35046694,35047367..35047440,35047542..35047649, 35047733..35047827,35048410..35048473,35048935..35048988, 35049094..35049135,35049632..35050109,35050583..35051024) /locus_tag="TCM_025836" /product="Polyribonucleotide nucleotidyltransferase isoform 4" /inference="alignment:exonerate- protein:2:ricco:30072.m000941" /inference="similar to AA sequence:ricco:30072.m000941" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:PASA:2:TSA:puevd3b024984t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9242t3" mRNA join(35034339..35034731,35035298..35035366, 35038114..35038270,35041218..35041274,35042299..35042412, 35043024..35043287,35043408..35043479,35044125..35044238, 35044553..35044645,35045726..35045904,35046048..35046231, 35046380..35046427,35046622..35046694,35047367..35047440, 35047542..35047649,35047733..35047827,35048410..35048473, 35048935..35048988,35049094..35049135,35049632..35050109, 35050583..35050926) /locus_tag="TCM_025836" /product="Polyribonucleotide nucleotidyltransferase, putative isoform 6" /inference="alignment:exonerate- protein:2:ricco:30072.m000941" /inference="similar to AA sequence:ricco:30072.m000941" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1064t7_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9242t3" mRNA join(35034343..35034731,35035298..35035366, 35035511..35035617,35035700..35035742,35036552..35036635, 35037944..35038008,35038114..35038270,35041218..35041274, 35042299..35042412,35043024..35043287,35044125..35044238, 35044553..35044645,35045726..35045904,35046048..35046231, 35046380..35046427,35046622..35046694,35047367..35047440, 35047542..35047649,35047733..35047827,35048410..35048473, 35048935..35048988,35049094..35049135,35049632..35050109, 35050583..35051257) /locus_tag="TCM_025836" /product="Polyribonucleotide nucleotidyltransferase isoform 3" /inference="alignment:exonerate- protein:2:ricco:30072.m000941" /inference="similar to AA sequence:ricco:30072.m000941" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1055t11; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9242t3" CDS join(35034411..35034731,35035298..35035366, 35035511..35035617,35035700..35035742,35036552..35036635, 35037944..35038008,35038114..35038270,35041218..35041274, 35042299..35042412,35043024..35043287,35043408..35043479, 35044125..35044238,35044553..35044645,35045726..35045904, 35046048..35046231,35046380..35046427,35046622..35046694, 35047367..35047440,35047542..35047649,35047733..35047827, 35048410..35048473,35048935..35048988,35049094..35049135, 35049632..35049991) /locus_tag="TCM_025836" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30072.m000941" /codon_start=1 /product="Polyribonucleotide nucleotidyltransferase isoform 1" /protein_id="EOY10477.1" /db_xref="TAIR:AT3G03710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GZQ3" /translation="MLVNPSGVQSTPCYSHPSHFTFSNRCKLFLSPSCPRFLSSKKSS KFCSVSLLLSRNGGGGNRFSVRALLEPEVSESIAAAADGAGGGDGGSGILQPVSVKIP FGDREILVETGHIGRQASGSVMATDGETIVYTSVCLSDVPSEPSDFFPLNVNYQERFS AAGRTSGGFYKREGRTKDHEVLICRLIDRPLRPTMPKGFYHETQLLSWVLSYDGLHSP DALAVTAAGLAVALSEVPNSKAIAGVRVGLLGDRFVVNPTTKEMEDSTLDLFLAGTDS AILMVEGYCDFLPEEKLLEAVQVGQDAVRAICTAVDALVKKCGKPKMLDAIKLPPPGL YRRVEKIAGDELHKVLQIRSKIPRRKAISLLEENVINILTEKGYISTEDNSGTAETIQ DWLEEEDEDEEIVVDGEVDEGDVHIKPVSRKSTPLFTEVDVKLVFKEVTSKFLRRRIV EGGKRSDGRSPEGIRSITSRCGLLPRAHGSALFTRGETQSLVVVTLGDRQMAQKVDNL ANVEEFKRFYLQYSFPPSCVGEVGRMGAPSRREIGHGTLAERALEPILPSEDEFPYTI RVESTITESNGSSSMASVCGGCLALQDAGVPLKCSIAGIAMGMVLDTKEFGGDGAPLI LSDITGSEDASGDMDLKVAGTEDGITAFQMDIKVGGITLPVMKEALLQARDGRRRVLG EMLKCSPPPAKSLSKYAPLIHIMKVAPDKVNIIIGSGGKKVKSIIEETGVEAIDTQDD GIVKITAKDLSSLEKSKSIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLC HISELTSDWLAKAEDAFKVGDRVDVKLIEVNDKGQLRLSRRALLPVPETNSEDPSSEQ LTGHQAKVITDSGKASDKSTPKKYVNVPKSDALAQEKLEQPKDKSSGTKISSSSKSSS AENTLLPRKKVFKRIKKSTSKAVTGVSGKDGE" CDS join(35034411..35034731,35035298..35035366, 35035511..35035617,35035700..35035742,35036552..35036635, 35037944..35038008,35038114..35038270,35041218..35041274, 35042299..35042412,35043024..35043287,35043408..35043479, 35044125..35044238,35044553..35044645,35045726..35045904, 35046048..35046231,35046380..35046427,35046622..35046694, 35047367..35047440,35047542..35047649,35047733..35047827, 35048410..35048473,35048935..35048988,35049094..35049135, 35049632..35049991) /locus_tag="TCM_025836" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30072.m000941" /codon_start=1 /product="Polyribonucleotide nucleotidyltransferase isoform 1" /protein_id="EOY10478.1" /db_xref="TAIR:AT3G03710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GZQ3" /translation="MLVNPSGVQSTPCYSHPSHFTFSNRCKLFLSPSCPRFLSSKKSS KFCSVSLLLSRNGGGGNRFSVRALLEPEVSESIAAAADGAGGGDGGSGILQPVSVKIP FGDREILVETGHIGRQASGSVMATDGETIVYTSVCLSDVPSEPSDFFPLNVNYQERFS AAGRTSGGFYKREGRTKDHEVLICRLIDRPLRPTMPKGFYHETQLLSWVLSYDGLHSP DALAVTAAGLAVALSEVPNSKAIAGVRVGLLGDRFVVNPTTKEMEDSTLDLFLAGTDS AILMVEGYCDFLPEEKLLEAVQVGQDAVRAICTAVDALVKKCGKPKMLDAIKLPPPGL YRRVEKIAGDELHKVLQIRSKIPRRKAISLLEENVINILTEKGYISTEDNSGTAETIQ DWLEEEDEDEEIVVDGEVDEGDVHIKPVSRKSTPLFTEVDVKLVFKEVTSKFLRRRIV EGGKRSDGRSPEGIRSITSRCGLLPRAHGSALFTRGETQSLVVVTLGDRQMAQKVDNL ANVEEFKRFYLQYSFPPSCVGEVGRMGAPSRREIGHGTLAERALEPILPSEDEFPYTI RVESTITESNGSSSMASVCGGCLALQDAGVPLKCSIAGIAMGMVLDTKEFGGDGAPLI LSDITGSEDASGDMDLKVAGTEDGITAFQMDIKVGGITLPVMKEALLQARDGRRRVLG EMLKCSPPPAKSLSKYAPLIHIMKVAPDKVNIIIGSGGKKVKSIIEETGVEAIDTQDD GIVKITAKDLSSLEKSKSIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLC HISELTSDWLAKAEDAFKVGDRVDVKLIEVNDKGQLRLSRRALLPVPETNSEDPSSEQ LTGHQAKVITDSGKASDKSTPKKYVNVPKSDALAQEKLEQPKDKSSGTKISSSSKSSS AENTLLPRKKVFKRIKKSTSKAVTGVSGKDGE" CDS join(35034411..35034731,35035298..35035366, 35035511..35035617,35035700..35035742,35036552..35036635, 35037944..35038008,35038114..35038270,35041218..35041274, 35042299..35042412,35043024..35043287,35044125..35044238, 35044553..35044645,35045726..35045904,35046048..35046231, 35046380..35046427,35046622..35046694,35047367..35047440, 35047542..35047649,35047733..35047827,35048410..35048473, 35048935..35048988,35049094..35049135,35049632..35049991) /locus_tag="TCM_025836" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30072.m000941" /codon_start=1 /product="Polyribonucleotide nucleotidyltransferase isoform 3" /protein_id="EOY10479.1" /db_xref="TAIR:AT3G03710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GZQ3" /translation="MLVNPSGVQSTPCYSHPSHFTFSNRCKLFLSPSCPRFLSSKKSS KFCSVSLLLSRNGGGGNRFSVRALLEPEVSESIAAAADGAGGGDGGSGILQPVSVKIP FGDREILVETGHIGRQASGSVMATDGETIVYTSVCLSDVPSEPSDFFPLNVNYQERFS AAGRTSGGFYKREGRTKDHEVLICRLIDRPLRPTMPKGFYHETQLLSWVLSYDGLHSP DALAVTAAGLAVALSEVPNSKAIAGVRVGLLGDRFVVNPTTKEMEDSTLDLFLAGTDS AILMVEGYCDFLPEEKLLEAVQVGQDAVRAICTAVDALVKKCGKPKMLDAIKLPPPGL YRRVEKIAGDELHKVLQIRSKIPRRKAISLLEENVINILTEKGYISTEDNSGTAETIQ DWLEEEDEDEEIVVDGEVDEGDVHIKPVSRKSTPLGGKRSDGRSPEGIRSITSRCGLL PRAHGSALFTRGETQSLVVVTLGDRQMAQKVDNLANVEEFKRFYLQYSFPPSCVGEVG RMGAPSRREIGHGTLAERALEPILPSEDEFPYTIRVESTITESNGSSSMASVCGGCLA LQDAGVPLKCSIAGIAMGMVLDTKEFGGDGAPLILSDITGSEDASGDMDLKVAGTEDG ITAFQMDIKVGGITLPVMKEALLQARDGRRRVLGEMLKCSPPPAKSLSKYAPLIHIMK VAPDKVNIIIGSGGKKVKSIIEETGVEAIDTQDDGIVKITAKDLSSLEKSKSIISNLT MVPTVGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELTSDWLAKAEDAFKVGDRVD VKLIEVNDKGQLRLSRRALLPVPETNSEDPSSEQLTGHQAKVITDSGKASDKSTPKKY VNVPKSDALAQEKLEQPKDKSSGTKISSSSKSSSAENTLLPRKKVFKRIKKSTSKAVT GVSGKDGE" CDS join(35034411..35034731,35035298..35035366, 35035590..35035617,35035723..35035742,35036552..35036635, 35037944..35038008,35038114..35038270,35041218..35041274, 35042299..35042412,35043024..35043287,35043408..35043479, 35044125..35044238,35044553..35044645,35045726..35045904, 35046048..35046231,35046380..35046427,35046622..35046694, 35047367..35047440,35047542..35047649,35047733..35047827, 35048410..35048473,35048935..35048988,35049094..35049135, 35049632..35049991) /locus_tag="TCM_025836" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30072.m000941" /codon_start=1 /product="Polyribonucleotide nucleotidyltransferase isoform 4" /protein_id="EOY10480.1" /db_xref="TAIR:AT3G03710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GZQ3" /translation="MLVNPSGVQSTPCYSHPSHFTFSNRCKLFLSPSCPRFLSSKKSS KFCSVSLLLSRNGGGGNRFSVRALLEPEVSESIAAAADGAGGGDGGSGILQPVSVKIP FGDREILVETGHIGRQASGSVMATDGETNVFRQQVERGRTKDHEVLICRLIDRPLRPT MPKGFYHETQLLSWVLSYDGLHSPDALAVTAAGLAVALSEVPNSKAIAGVRVGLLGDR FVVNPTTKEMEDSTLDLFLAGTDSAILMVEGYCDFLPEEKLLEAVQVGQDAVRAICTA VDALVKKCGKPKMLDAIKLPPPGLYRRVEKIAGDELHKVLQIRSKIPRRKAISLLEEN VINILTEKGYISTEDNSGTAETIQDWLEEEDEDEEIVVDGEVDEGDVHIKPVSRKSTP LFTEVDVKLVFKEVTSKFLRRRIVEGGKRSDGRSPEGIRSITSRCGLLPRAHGSALFT RGETQSLVVVTLGDRQMAQKVDNLANVEEFKRFYLQYSFPPSCVGEVGRMGAPSRREI GHGTLAERALEPILPSEDEFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPLKC SIAGIAMGMVLDTKEFGGDGAPLILSDITGSEDASGDMDLKVAGTEDGITAFQMDIKV GGITLPVMKEALLQARDGRRRVLGEMLKCSPPPAKSLSKYAPLIHIMKVAPDKVNIII GSGGKKVKSIIEETGVEAIDTQDDGIVKITAKDLSSLEKSKSIISNLTMVPTVGDIYR NCEIKSIAPYGVFVEIAPGREGLCHISELTSDWLAKAEDAFKVGDRVDVKLIEVNDKG QLRLSRRALLPVPETNSEDPSSEQLTGHQAKVITDSGKASDKSTPKKYVNVPKSDALA QEKLEQPKDKSSGTKISSSSKSSSAENTLLPRKKVFKRIKKSTSKAVTGVSGKDGE" mRNA join(35035337..35035366,35035700..35035742, 35036552..35036635,35037944..35038008,35038114..35038270, 35041218..35041274,35042299..35042412,35043024..35043287, 35043408..35043479,35044125..35044238,35044553..35044645, 35045726..35045904,35046048..35046231,35046380..35046427, 35046622..35046694,35047367..35047440,35047542..35047649, 35047733..35047827,35048410..35048473,35048935..35048988, 35049094..35049135,35049632..35050109,35050583..35051257) /locus_tag="TCM_025836" /product="Polyribonucleotide nucleotidyltransferase, putative isoform 5" /inference="alignment:exonerate- protein:2:ricco:30072.m000941" /inference="similar to AA sequence:ricco:30072.m000941" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1059t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9242t3" CDS join(35035356..35035366,35035700..35035742, 35036552..35036635,35037944..35038008,35038114..35038270, 35041218..35041274,35042299..35042412,35043024..35043287, 35043408..35043479,35044125..35044238,35044553..35044645, 35045726..35045904,35046048..35046231,35046380..35046427, 35046622..35046694,35047367..35047440,35047542..35047649, 35047733..35047827,35048410..35048473,35048935..35048988, 35049094..35049135,35049632..35049991) /locus_tag="TCM_025836" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:30072.m000941" /codon_start=1 /product="Polyribonucleotide nucleotidyltransferase, putative isoform 5" /protein_id="EOY10481.1" /db_xref="TAIR:AT3G03710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GZQ3" /translation="MEKLGGFYKREGRTKDHEVLICRLIDRPLRPTMPKGFYHETQLL SWVLSYDGLHSPDALAVTAAGLAVALSEVPNSKAIAGVRVGLLGDRFVVNPTTKEMED STLDLFLAGTDSAILMVEGYCDFLPEEKLLEAVQVGQDAVRAICTAVDALVKKCGKPK MLDAIKLPPPGLYRRVEKIAGDELHKVLQIRSKIPRRKAISLLEENVINILTEKGYIS TEDNSGTAETIQDWLEEEDEDEEIVVDGEVDEGDVHIKPVSRKSTPLFTEVDVKLVFK EVTSKFLRRRIVEGGKRSDGRSPEGIRSITSRCGLLPRAHGSALFTRGETQSLVVVTL GDRQMAQKVDNLANVEEFKRFYLQYSFPPSCVGEVGRMGAPSRREIGHGTLAERALEP ILPSEDEFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPLKCSIAGIAMGMVLD TKEFGGDGAPLILSDITGSEDASGDMDLKVAGTEDGITAFQMDIKVGGITLPVMKEAL LQARDGRRRVLGEMLKCSPPPAKSLSKYAPLIHIMKVAPDKVNIIIGSGGKKVKSIIE ETGVEAIDTQDDGIVKITAKDLSSLEKSKSIISNLTMVPTVGDIYRNCEIKSIAPYGV FVEIAPGREGLCHISELTSDWLAKAEDAFKVGDRVDVKLIEVNDKGQLRLSRRALLPV PETNSEDPSSEQLTGHQAKVITDSGKASDKSTPKKYVNVPKSDALAQEKLEQPKDKSS GTKISSSSKSSSAENTLLPRKKVFKRIKKSTSKAVTGVSGKDGE" CDS join(35035356..35035366,35038114..35038270, 35041218..35041274,35042299..35042412,35043024..35043287, 35043408..35043479,35044125..35044238,35044553..35044645, 35045726..35045904,35046048..35046231,35046380..35046427, 35046622..35046694,35047367..35047440,35047542..35047649, 35047733..35047827,35048410..35048473,35048935..35048988, 35049094..35049135,35049632..35049991) /locus_tag="TCM_025836" /note="encoded by transcript variant 6; alternatively spliced; dbxref ricco:30072.m000941" /codon_start=1 /product="Polyribonucleotide nucleotidyltransferase, putative isoform 6" /protein_id="EOY10482.1" /db_xref="TAIR:AT3G03710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GZQ3" /translation="MEKLALSEVPNSKAIAGVRVGLLGDRFVVNPTTKEMEDSTLDLF LAGTDSAILMVEGYCDFLPEEKLLEAVQVGQDAVRAICTAVDALVKKCGKPKMLDAIK LPPPGLYRRVEKIAGDELHKVLQIRSKIPRRKAISLLEENVINILTEKGYISTEDNSG TAETIQDWLEEEDEDEEIVVDGEVDEGDVHIKPVSRKSTPLFTEVDVKLVFKEVTSKF LRRRIVEGGKRSDGRSPEGIRSITSRCGLLPRAHGSALFTRGETQSLVVVTLGDRQMA QKVDNLANVEEFKRFYLQYSFPPSCVGEVGRMGAPSRREIGHGTLAERALEPILPSED EFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPLKCSIAGIAMGMVLDTKEFGG DGAPLILSDITGSEDASGDMDLKVAGTEDGITAFQMDIKVGGITLPVMKEALLQARDG RRRVLGEMLKCSPPPAKSLSKYAPLIHIMKVAPDKVNIIIGSGGKKVKSIIEETGVEA IDTQDDGIVKITAKDLSSLEKSKSIISNLTMVPTVGDIYRNCEIKSIAPYGVFVEIAP GREGLCHISELTSDWLAKAEDAFKVGDRVDVKLIEVNDKGQLRLSRRALLPVPETNSE DPSSEQLTGHQAKVITDSGKASDKSTPKKYVNVPKSDALAQEKLEQPKDKSSGTKISS SSKSSSAENTLLPRKKVFKRIKKSTSKAVTGVSGKDGE" gene 35052357..35057283 /locus_tag="TCM_025837" /note="dbxref CacaoGD:Thecc1EG025837" mRNA join(35052357..35052524,35052646..35052756, 35053086..35053118,35053561..35053729,35054005..35054186, 35054407..35054543,35054679..35054777,35055092..35055161, 35055234..35055308,35056028..35056073,35056709..35057283) /locus_tag="TCM_025837" /product="ATPase family associated with various cellular activities (AAA) isoform 1" /inference="alignment:exonerate- protein:2:ricco:30072.m000942" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000349t1" /inference="similar to AA sequence:TAIR:AT5G27740.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc164t2" mRNA join(35052408..35052524,35052646..35052756, 35053086..35053118,35053561..35053729,35054005..35054186, 35054407..35054543,35054679..35054777,35055092..35055161, 35055234..35055251,35056028..35056073,35056709..>35056724) /locus_tag="TCM_025837" /product="ATPase family associated with various cellular activities (AAA) isoform 2" /inference="alignment:exonerate- protein:2:ricco:30072.m000942" /inference="similar to AA sequence:Phytozome:POPTR_0019s05640.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc163t3; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc164t2" CDS join(35052441..35052524,35052646..35052756, 35053086..35053118,35053561..35053729,35054005..35054186, 35054407..35054543,35054679..35054777,35055092..35055161, 35055234..35055308,35056028..35056073,35056709..35056767) /locus_tag="TCM_025837" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG000349t1" /codon_start=1 /product="ATPase family associated with various cellular activities (AAA) isoform 1" /protein_id="EOY10483.1" /db_xref="TAIR:AT5G27740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A4RWV3" /translation="MLWVDKYRPKTLDQVMVHQDIAQNLKKLVTEQDCPHLLFYGPSG SGKKTLIMALLRQIFGSSAEKVKVENRNWKIDIGSRTIDLELTTLSSTNHVELSPSDV GFQDRYVVQEIIKEMAKNRPIDTKGRKGYKVLVLNEVDKLSRQAQHSLRRTMEKYSAS CRLILCCNSSSKVTEAIRSRCLNIRVNAPSEEQIIKVLEFVGKKEGLQLPSGFAARIA EKTNRSLRRAILSFETCRVQQYPFTSSQAIPPMDWEEYISEIATDIMKEQSPKRLFQV RGKVYELLINCIPPEIILKRLLHELLKKLDAELKHEICHWAAYYEHRMRLGQKAIFHI EAFVAKFMSIYKAFLIATFG" CDS join(35052441..35052524,35052646..35052756, 35053086..35053118,35053561..35053729,35054005..35054186, 35054407..35054543,35054679..35054777,35055092..35055161, 35055234..35055251,35056028..35056073,35056709..>35056722) /locus_tag="TCM_025837" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="ATPase family associated with various cellular activities (AAA) isoform 2" /protein_id="EOY10484.1" /db_xref="Phytozome:POPTR_0019s05640.1" /db_xref="TAIR:AT5G27740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A4RWV3" /translation="MLWVDKYRPKTLDQVMVHQDIAQNLKKLVTEQDCPHLLFYGPSG SGKKTLIMALLRQIFGSSAEKVKVENRNWKIDIGSRTIDLELTTLSSTNHVELSPSDV GFQDRYVVQEIIKEMAKNRPIDTKGRKGYKVLVLNEVDKLSRQAQHSLRRTMEKYSAS CRLILCCNSSSKVTEAIRSRCLNIRVNAPSEEQIIKVLEFVGKKEGLQLPSGFAARIA EKTNRSLRRAILSFETCRVQQYPFTSSQAIPPMDWEEYISEIATDIMKEQSPKRLFQV RGKVYELLINCIPPEIILKRLLHELEHRMRLGQKAIFHIEAFVAK" gene 35057626..35060748 /locus_tag="TCM_025838" /note="dbxref CacaoGD:Thecc1EG025838" mRNA join(35057626..35057903,35058007..35059252, 35060177..35060748) /locus_tag="TCM_025838" /product="Microfibrillar-associated protein 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g11430.1" /inference="similar to AA sequence:frave:gene29176" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06127t00001" CDS join(35058063..35059252,35060177..35060291) /locus_tag="TCM_025838" /note="dbxref frave:gene29176" /codon_start=1 /product="Microfibrillar-associated protein 1" /protein_id="EOY10485.1" /db_xref="TAIR:AT5G17900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C0Z3G2" /translation="MSVTAGVSDTIIAIRDKLRGKIGQTKVKRYWPGKAPEWADDADE EGDIRMARAVALEKAFPSRDDSDVVRKDDPRLRRLAESRIDNRDEIRADHRRIRQAEI VSTEEEENRRNEGVEAEEEDEDALEERRRRIREKLLQREQEETALLEEEEEEEEVEEE EEEESEYETDSEEEHTGIAMVKPVFVPKSERDTIAERERLEAEERAIEEAEKRKLEHR KVETRQIVVEKIREDEEIQKNMELEANVADVDTDDEVNEAEEYEAWKAREIARIKRDR EEREAMIKEKEEIEKVRNMTEEERREWERKNPKPAPPPKQKWKFMQKYYHKGAFFQAE ADDPAAAVGADNIYHRDFSGPTGEDKMDKTILPKVMQVKHFGRSGRTKWTHLVNEDTT DWNNPWTYNDPLRAKYNAKMAAVNAPVAKPKGSKKLKDWESK" mobile_element complement(35061774..35062340) /note="source:INTACT687_F13_scaffold_3-int 1316 2053" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 35062488..35064185 /locus_tag="TCM_025839" /note="dbxref CacaoGD:Thecc1EG025839" mRNA join(35062488..35062561,35062864..35063098, 35063187..35063242,35063821..35064185) /locus_tag="TCM_025839" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30072.m000944" /inference="similar to AA sequence:Phytozome:POPTR_0013s06130.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g16904t00001" CDS join(35062511..35062561,35062864..35063098, 35063187..35063242,35063821..35063991) /locus_tag="TCM_025839" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10486.1" /db_xref="Phytozome:POPTR_0013s06130.1" /db_xref="TAIR:AT5G37480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I637" /translation="MAEEFAEEVNNSLQPPPFVEVICKSSGKKSRFAAGTKAGFAVSL INRKLDIGNPFALHIEAVKQGEEPISFGPDAVLVNYGNGWKLQTVTEADFPGTRKGEG FRPVSAQIPIVKNFDGSHSTKRTSKPGISYLYIAKILLAFVLMFVLAGILMLGLENLP RLILFINSSM" gene complement(35064067..35070373) /locus_tag="TCM_025840" /note="dbxref CacaoGD:Thecc1EG025840" mRNA complement(join(35064067..35064489,35064659..35064734, 35064834..35064946,35065377..35065485,35065903..35066170, 35066643..35066801,35067400..35067466,35067564..35067736, 35067839..35067935,35068005..35068123,35068207..35068347, 35068495..35068579,35068805..35069006,35069663..35070373)) /locus_tag="TCM_025840" /product="Cationic amino acid transporter 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s05620.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025843t1" /inference="similar to AA sequence:ricco:30072.m000947" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9466t2" mRNA complement(join(35064328..35064489,35064659..35064734, 35064834..35064946,35065377..35065485,35065903..35066170, 35066643..35066801,35067400..35067466,35067564..35067736, 35067839..35067935,35068005..35068123,35068207..35068347, 35068495..35068579,35068805..35069006,35069663..35070170)) /locus_tag="TCM_025840" /product="Cationic amino acid transporter 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s05620.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025843t1" /inference="similar to AA sequence:ricco:30072.m000947" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc409t11_C2; alternateUTRof:Thecc1EG025840t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9466t2; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc409t12_C2" mRNA complement(join(35064328..35064489,35064659..35064734, 35064834..35064946,35065377..35065641,35065903..35066170, 35066643..35066801,35067400..35067466,35067564..35067736, 35067839..35067935,35068005..35068123,35068207..35068347, 35068495..35068579,35068805..35069006,35069663..35070170)) /locus_tag="TCM_025840" /product="Cationic amino acid transporter 2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s05620.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025843t2" /inference="similar to AA sequence:ricco:30072.m000947" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc409t12_C2; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc409t12_C2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc399t13_C2" CDS complement(join(35064336..35064489,35064659..35064734, 35064834..35064946,35065377..35065485,35065903..35066170, 35066643..35066801,35067400..35067466,35067564..35067736, 35067839..35067935,35068005..35068123,35068207..35068347, 35068495..35068579,35068805..35069006,35069663..35069822)) /locus_tag="TCM_025840" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30072.m000947; paralog of Thecc1EG025843t1" /codon_start=1 /product="Cationic amino acid transporter 2 isoform 1" /protein_id="EOY10487.1" /db_xref="TAIR:AT1G58030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ASS7" /translation="MGFLVDSQKDGFGSSWGGLKSFVRRKQVDSAHTKRLGHHQLAKE LTVRHLIAIGVGSTIGAGVYILVGTVAREHSGPALTISFLIAGIAAALSAFCYAELAS RCPSAGSAYHYSYICVGEGVAWLIGWALILEYTIGGAAVARGISPNLALLFGGQNSLP IFLARQHIPGLDIVVDPCAAVLVFVVTGLLCVGIKESTLAQAIVTSANVCAMIFVIVA GGYLGFKTGWAGYELPTGYFPFGVDGMLAGSATVFFAYIGFDSVASTAEEVKNPQRDL PLGIATALSICCGLYMLVSVVIVGLVPYYEMDPDTPISSAFASYGMQWAAYIITVGAV TALCSTLMGSILPQPRILMAMARDGLLPSFFSDVNKRSQVPVKSTVTTGIVAATLSFF MDVSQLAGMVSVGTLLAFTMVAISVLILRYVPPDEVPLPSSLQESIDSVTLRYSRDSQ VTSGENPEMSTSTGSSQPLLSKKNVAIDCPIIEKQEAQASCTLNEEYRRKIAGWTILL TCVGAFSLTFAASSLWLPSLLRFMLCGVGGVLLLFGLIVLTCIDQDDARHNFGHTGGF ICPFVPLLPIACILINVYLLINLGAATWARVSVWLVLGFLVYVFYGRTHSSLLDAVYV PAAHADEIYRSGDSLA" CDS complement(join(35064336..35064489,35064659..35064734, 35064834..35064946,35065377..35065485,35065903..35066170, 35066643..35066801,35067400..35067466,35067564..35067736, 35067839..35067935,35068005..35068123,35068207..35068347, 35068495..35068579,35068805..35069006,35069663..35069822)) /locus_tag="TCM_025840" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30072.m000947; paralog of Thecc1EG025843t1" /codon_start=1 /product="Cationic amino acid transporter 2 isoform 1" /protein_id="EOY10489.1" /db_xref="TAIR:AT1G58030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ASS7" /translation="MGFLVDSQKDGFGSSWGGLKSFVRRKQVDSAHTKRLGHHQLAKE LTVRHLIAIGVGSTIGAGVYILVGTVAREHSGPALTISFLIAGIAAALSAFCYAELAS RCPSAGSAYHYSYICVGEGVAWLIGWALILEYTIGGAAVARGISPNLALLFGGQNSLP IFLARQHIPGLDIVVDPCAAVLVFVVTGLLCVGIKESTLAQAIVTSANVCAMIFVIVA GGYLGFKTGWAGYELPTGYFPFGVDGMLAGSATVFFAYIGFDSVASTAEEVKNPQRDL PLGIATALSICCGLYMLVSVVIVGLVPYYEMDPDTPISSAFASYGMQWAAYIITVGAV TALCSTLMGSILPQPRILMAMARDGLLPSFFSDVNKRSQVPVKSTVTTGIVAATLSFF MDVSQLAGMVSVGTLLAFTMVAISVLILRYVPPDEVPLPSSLQESIDSVTLRYSRDSQ VTSGENPEMSTSTGSSQPLLSKKNVAIDCPIIEKQEAQASCTLNEEYRRKIAGWTILL TCVGAFSLTFAASSLWLPSLLRFMLCGVGGVLLLFGLIVLTCIDQDDARHNFGHTGGF ICPFVPLLPIACILINVYLLINLGAATWARVSVWLVLGFLVYVFYGRTHSSLLDAVYV PAAHADEIYRSGDSLA" mRNA complement(join(35065208..35065235,35065377..35065485, 35065903..35066170,35066643..35066801,35067400..35067466, 35067564..35067736,35067839..35067935,35068005..35068123, 35068207..35068347,35068495..35068579,35068805..35069006, 35069663..35070170)) /locus_tag="TCM_025840" /product="Cationic amino acid transporter 2 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s05620.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025843t2" /inference="similar to AA sequence:ricco:30072.m000947" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc399t13_C2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc399t13_C2; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc409t12_C2" CDS complement(join(35065211..35065235,35065377..35065485, 35065903..35066170,35066643..35066801,35067400..35067466, 35067564..35067736,35067839..35067935,35068005..35068123, 35068207..35068347,35068495..35068579,35068805..35069006, 35069663..35069822)) /locus_tag="TCM_025840" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30072.m000947; paralog of Thecc1EG025843t2" /codon_start=1 /product="Cationic amino acid transporter 2 isoform 4" /protein_id="EOY10490.1" /db_xref="TAIR:AT1G58030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ASS7" /translation="MGFLVDSQKDGFGSSWGGLKSFVRRKQVDSAHTKRLGHHQLAKE LTVRHLIAIGVGSTIGAGVYILVGTVAREHSGPALTISFLIAGIAAALSAFCYAELAS RCPSAGSAYHYSYICVGEGVAWLIGWALILEYTIGGAAVARGISPNLALLFGGQNSLP IFLARQHIPGLDIVVDPCAAVLVFVVTGLLCVGIKESTLAQAIVTSANVCAMIFVIVA GGYLGFKTGWAGYELPTGYFPFGVDGMLAGSATVFFAYIGFDSVASTAEEVKNPQRDL PLGIATALSICCGLYMLVSVVIVGLVPYYEMDPDTPISSAFASYGMQWAAYIITVGAV TALCSTLMGSILPQPRILMAMARDGLLPSFFSDVNKRSQVPVKSTVTTGIVAATLSFF MDVSQLAGMVSVGTLLAFTMVAISVLILRYVPPDEVPLPSSLQESIDSVTLRYSRDSQ VTSGENPEMSTSTGSSQPLLSKKNVAIDCPIIEKQEAQASCTLNEEYRRKIAGWTILL TCVGAFSLTFAASSLWLPRKKKGDGE" mRNA complement(join(35065456..35065641,35065903..35066170, 35066643..35066801,35067400..35067466,35067564..35067736, 35067839..35067935,35068005..35068123,35068207..35068347, 35068495..35068579,35068805..35069006,35069663..35070170)) /locus_tag="TCM_025840" /product="Cationic amino acid transporter 2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s05620.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025843t2" /inference="similar to AA sequence:ricco:30072.m000947" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc399t7_C2; alternateUTRof:Thecc1EG025840t2; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc409t12_C2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc399t13_C2" CDS complement(join(35065577..35065641,35065903..35066170, 35066643..35066801,35067400..35067466,35067564..35067736, 35067839..35067935,35068005..35068123,35068207..35068347, 35068495..35068579,35068805..35069006,35069663..35069822)) /locus_tag="TCM_025840" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30072.m000947; paralog of Thecc1EG025843t2" /codon_start=1 /product="Cationic amino acid transporter 2 isoform 2" /protein_id="EOY10488.1" /db_xref="TAIR:AT1G58030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ASS7" /translation="MGFLVDSQKDGFGSSWGGLKSFVRRKQVDSAHTKRLGHHQLAKE LTVRHLIAIGVGSTIGAGVYILVGTVAREHSGPALTISFLIAGIAAALSAFCYAELAS RCPSAGSAYHYSYICVGEGVAWLIGWALILEYTIGGAAVARGISPNLALLFGGQNSLP IFLARQHIPGLDIVVDPCAAVLVFVVTGLLCVGIKESTLAQAIVTSANVCAMIFVIVA GGYLGFKTGWAGYELPTGYFPFGVDGMLAGSATVFFAYIGFDSVASTAEEVKNPQRDL PLGIATALSICCGLYMLVSVVIVGLVPYYEMDPDTPISSAFASYGMQWAAYIITVGAV TALCSTLMGSILPQPRILMAMARDGLLPSFFSDVNKRSQVPVKSTVTTGIVAATLSFF MDVSQLAGMVSVGTLLAFTMVAISVLILRYVPPDEVPLPSSLQESIDSVTLRYSRDSQ VTSGENPEMSTSTGSSQPLLSKKNVAIDCPIIEKQEAQASLSPLSKIQIIWAWGQFAT CPP" CDS complement(join(35065577..35065641,35065903..35066170, 35066643..35066801,35067400..35067466,35067564..35067736, 35067839..35067935,35068005..35068123,35068207..35068347, 35068495..35068579,35068805..35069006,35069663..35069822)) /locus_tag="TCM_025840" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:30072.m000947; paralog of Thecc1EG025843t2" /codon_start=1 /product="Cationic amino acid transporter 2 isoform 2" /protein_id="EOY10491.1" /db_xref="TAIR:AT1G58030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ASS7" /translation="MGFLVDSQKDGFGSSWGGLKSFVRRKQVDSAHTKRLGHHQLAKE LTVRHLIAIGVGSTIGAGVYILVGTVAREHSGPALTISFLIAGIAAALSAFCYAELAS RCPSAGSAYHYSYICVGEGVAWLIGWALILEYTIGGAAVARGISPNLALLFGGQNSLP IFLARQHIPGLDIVVDPCAAVLVFVVTGLLCVGIKESTLAQAIVTSANVCAMIFVIVA GGYLGFKTGWAGYELPTGYFPFGVDGMLAGSATVFFAYIGFDSVASTAEEVKNPQRDL PLGIATALSICCGLYMLVSVVIVGLVPYYEMDPDTPISSAFASYGMQWAAYIITVGAV TALCSTLMGSILPQPRILMAMARDGLLPSFFSDVNKRSQVPVKSTVTTGIVAATLSFF MDVSQLAGMVSVGTLLAFTMVAISVLILRYVPPDEVPLPSSLQESIDSVTLRYSRDSQ VTSGENPEMSTSTGSSQPLLSKKNVAIDCPIIEKQEAQASLSPLSKIQIIWAWGQFAT CPP" mobile_element 35070876..35070950 /note="source:CACAO_M_E22886_F96_scaffold_3 672 742" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(35070888..35070965) /note="source:CACAO_M_E47_F305_scaffold_1 1273 1354" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(35071128..35080393) /locus_tag="TCM_025841" /note="dbxref CacaoGD:Thecc1EG025841" mRNA complement(join(35071128..35071371,35079740..35080393)) /locus_tag="TCM_025841" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030492t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc8855t1" mobile_element complement(35074952..35075027) /note="source:CACAO_Mariner_E265_scaffold_10 52 127" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 35076142..35081435 /note="source:CACAO_M_E44203_F118_scaffold_5 1 5294" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(35079769..35080086) /locus_tag="TCM_025841" /note="paralog of Thecc1EG030492t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10492.1" /translation="MEERQLKGLCCNCDEPFIRGHQCKKLFWIDSVEEGDEDQTKYEP HANIDQPEISLNAIIGISTPQNMRLQGKLIGNPALTLVDFGSTHSFVDSKFVSQFNLQ VKR" mobile_element 35082347..35082656 /note="source:CACAO_PIF_E119_scaffold_3 4227 4610" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(35082414..35082671) /note="source:CACAO_Mariner_E220_scaffold_9 9040 9366" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene complement(35082643..35089683) /locus_tag="TCM_025843" /note="dbxref CacaoGD:Thecc1EG025843" mRNA complement(join(35082643..35083090,35083235..35083385, 35083489..35083564,35083907..35084019,35084961..35085069, 35085462..35085726,35085859..35086017,35086278..35086344, 35086449..35086621,35087674..35087770,35087854..35087972, 35088101..35088241,35088356..35088440,35088609..35088810, 35089288..35089683)) /locus_tag="TCM_025843" /product="Cationic amino acid transporter 4 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s05610.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025840t3" /inference="similar to AA sequence:Phytozome:POPTR_0019s05610.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1413t8" CDS complement(join(35083058..35083090,35083235..35083385, 35083489..35083564,35083907..35084019,35084961..35085069, 35085462..35085726,35085859..35086017,35086278..35086344, 35086449..35086621,35087674..35087770,35087854..35087972, 35088101..35088241,35088356..35088440,35088609..35088810, 35089288..35089435)) /locus_tag="TCM_025843" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG025840t3" /codon_start=1 /product="Cationic amino acid transporter 4 isoform 1" /protein_id="EOY10493.1" /db_xref="Phytozome:POPTR_0019s05610.1" /db_xref="TAIR:AT3G03720.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4J170" /translation="MRKRSEVLFSKYSKGLKSLVRRKQVDSVHVRREGHQLARQLSAL DLTAIGVGTTIGAGVYVLVGTVAREHTGPALTVSFLIAGLAAALSAFCYAELASRCPS AGSAYHYTYICIGESVAWLIGWSLILEYTIGGSAIARGISPNLALFFGGEDKLPAFLV RHTIPQLGVVVDPCAAVLVVIVTILLCAGIKESSLVQTIVTTVNVCAMLFIIIAGGYL ACKTGWAGYELHSGFFPFGVNGMLAGSAVVFFSYIGFDAVTAAAEEAKRPLRDLPLGI GMTLSLCCILYMLVSVVIVGLVPYFSLNPDTPISSAFSANGMQWAAYIVTAGAVTALC ASLMGSLFPQPRLLMAMARDGLLPSFFSDISTHTQVPVKSTVTAGTLAAALAFFMDVS QLSGMVSVGTLLAFTVVAISILILRYAPPDEVPLPPSLQQSIDSVRMQLDDDSQGTGR KNFNGVVDIVEQSSHQLEDGEAEIQCPLIQKQITEDKQNQQRRRKIAMWSIALFCIGV LVLTSAAAAEYLPSLLRFTLGAVGAAILLCSLIVLVCLNQDEARHSFGHTGGFLCPFV PLLPAACILINTYLLISLGVDTWIRVSIWLIIGSLIYIFYGWNHSSLTEAVYVPSAYV DEIYRASSSLQQYCHDGIGPF" mRNA complement(join(35083235..35083344,35083489..35083564, 35083907..35084019,35084961..35085069,35085462..35085726, 35085859..35086017,35086278..35086344,35086449..35086621, 35087674..35087770,35087854..35087972,35088101..35088241, 35088356..35088440,35088609..35088810,35089288..35089630)) /locus_tag="TCM_025843" /product="Cationic amino acid transporter 4 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s05610.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025840t3" /inference="similar to AA sequence:Phytozome:GSVIVT01029985001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1413t2; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1413t8" mRNA complement(join(35083235..35083385,35083489..35083564, 35083853..35084019,35084961..35085069,35085462..35085726, 35085859..35086017,35086278..35086344,35086449..35086621, 35087674..35087770,35087854..35087972,35088101..35088241, 35088356..35088440,35088609..35088810,35089288..35089630)) /locus_tag="TCM_025843" /product="Cationic amino acid transporter 4 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s05610.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025840t3" /inference="similar to AA sequence:Phytozome:GSVIVT01029985001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1413t5; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1413t8" mRNA complement(join(<35083235..35083385,35083489..35083564, 35083907..35084019,35084961..35085069,35085462..35085726, 35085859..35086017,35086278..35086344,35086449..35086621, 35087674..35087770,35087854..35087972,35088067..35088241, 35088356..35088440,35088609..35088810,35089288..35089467)) /locus_tag="TCM_025843" /product="Cationic amino acid transporter 4 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s05610.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025840t3" /inference="similar to AA sequence:Phytozome:POPTR_0019s05610.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1416t2; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1413t8" CDS complement(join(<35083235..35083385,35083489..35083564, 35083907..35084019,35084961..35085069,35085462..35085726, 35085859..35086017,35086278..35086344,35086449..35086621, 35087674..35087770,35087854..35087927)) /locus_tag="TCM_025843" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG025840t3" /codon_start=1 /product="Cationic amino acid transporter 4 isoform 3" /protein_id="EOY10495.1" /db_xref="Phytozome:POPTR_0019s05610.1" /db_xref="TAIR:AT3G03720.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4J170" /translation="MLFIIIAGGYLACKTGWAGYELHSGFFPFGVNGMLAGSAVVFFS YIGFDAVTAAAEEAKRPLRDLPLGIGMTLSLCCILYMLVSVVIVGLVPYFSLNPDTPI SSAFSANGMQWAAYIVTAGAVTALCASLMGSLFPQPRLLMAMARDGLLPSFFSDISTH TQVPVKSTVTAGTLAAALAFFMDVSQLSGMVSVGTLLAFTVVAISILILRYAPPDEVP LPPSLQQSIDSVRMQLDDDSQGTGRKNFNGVVDIVEQSSHQLEDGEAEIQCPLIQKQI TEDKQNQQRRRKIAMWSIALFCIGVLVLTSAAAAEYLPSLLRFTLGAVGAAILLCSLI VLVCLNQDEARHSFGHTGGFLCPFVPLLPAACILINTYLLISLGVDTWIRVSIWLIIG SLIYIFYGWNHSSLTEAVYVPSAYVDEIYRASSSLQ" CDS complement(join(35083266..35083344,35083489..35083564, 35083907..35084019,35084961..35085069,35085462..35085726, 35085859..35086017,35086278..35086344,35086449..35086621, 35087674..35087770,35087854..35087972,35088101..35088241, 35088356..35088440,35088609..35088810,35089288..35089435)) /locus_tag="TCM_025843" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG025840t3" /codon_start=1 /product="Cationic amino acid transporter 4 isoform 4" /protein_id="EOY10496.1" /db_xref="Phytozome:GSVIVT01029985001" /db_xref="TAIR:AT3G03720.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4J170" /translation="MRKRSEVLFSKYSKGLKSLVRRKQVDSVHVRREGHQLARQLSAL DLTAIGVGTTIGAGVYVLVGTVAREHTGPALTVSFLIAGLAAALSAFCYAELASRCPS AGSAYHYTYICIGESVAWLIGWSLILEYTIGGSAIARGISPNLALFFGGEDKLPAFLV RHTIPQLGVVVDPCAAVLVVIVTILLCAGIKESSLVQTIVTTVNVCAMLFIIIAGGYL ACKTGWAGYELHSGFFPFGVNGMLAGSAVVFFSYIGFDAVTAAAEEAKRPLRDLPLGI GMTLSLCCILYMLVSVVIVGLVPYFSLNPDTPISSAFSANGMQWAAYIVTAGAVTALC ASLMGSLFPQPRLLMAMARDGLLPSFFSDISTHTQVPVKSTVTAGTLAAALAFFMDVS QLSGMVSVGTLLAFTVVAISILILRYAPPDEVPLPPSLQQSIDSVRMQLDDDSQGTGR KNFNGVVDIVEQSSHQLEDGEAEIQCPLIQKQITEDKQNQQRRRKIAMWSIALFCIGV LVLTSAAAAEYLPSLLRFTLGAVGAAILLCSLIVLVCLNQDEARHSFGHTGGFLCPFV PLLPAACILINTYLLISLGVIDIYILRMEPQLTHRSSLCSFGIC" CDS complement(join(35083866..35084019,35084961..35085069, 35085462..35085726,35085859..35086017,35086278..35086344, 35086449..35086621,35087674..35087770,35087854..35087972, 35088101..35088241,35088356..35088440,35088609..35088810, 35089288..35089435)) /locus_tag="TCM_025843" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG025840t3" /codon_start=1 /product="Cationic amino acid transporter 4 isoform 2" /protein_id="EOY10494.1" /db_xref="Phytozome:GSVIVT01029985001" /db_xref="TAIR:AT3G03720.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4J170" /translation="MRKRSEVLFSKYSKGLKSLVRRKQVDSVHVRREGHQLARQLSAL DLTAIGVGTTIGAGVYVLVGTVAREHTGPALTVSFLIAGLAAALSAFCYAELASRCPS AGSAYHYTYICIGESVAWLIGWSLILEYTIGGSAIARGISPNLALFFGGEDKLPAFLV RHTIPQLGVVVDPCAAVLVVIVTILLCAGIKESSLVQTIVTTVNVCAMLFIIIAGGYL ACKTGWAGYELHSGFFPFGVNGMLAGSAVVFFSYIGFDAVTAAAEEAKRPLRDLPLGI GMTLSLCCILYMLVSVVIVGLVPYFSLNPDTPISSAFSANGMQWAAYIVTAGAVTALC ASLMGSLFPQPRLLMAMARDGLLPSFFSDISTHTQVPVKSTVTAGTLAAALAFFMDVS QLSGMVSVGTLLAFTVVAISILILRYAPPDEVPLPPSLQQSIDSVRMQLDDDSQGTGR KNFNGVVDIVEQSSHQLEDGEAEIQCPLIQKQITEDKQNQQRRRKIAMWSIALFCIGV LVLTSAAAAEYLPSLLRFTLGAVGAAILLCSLIVLVCLNQDEARHSFGHTGGMFKFYA MNMDES" gene complement(35089756..35095133) /locus_tag="TCM_025844" /note="dbxref CacaoGD:Thecc1EG025844" mRNA complement(join(35089756..35090569,35091355..35091634, 35091786..35092131,35094544..35095133)) /locus_tag="TCM_025844" /product="BTB-POZ and MATH domain 4 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g29420.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041139t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s05580.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02018t00001" mRNA complement(join(35089852..35090569,35090652..35090700, 35091355..35091634,35091786..35092131,35094544..35095012)) /locus_tag="TCM_025844" /product="BTB-POZ and MATH domain 4 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g29420.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041139t2" /inference="similar to AA sequence:Phytozome:POPTR_0019s05580.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9288t2; inference alignment:Newbler:10:TSA:cgbaL_g02018t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc23t9_C1" CDS complement(join(35090298..35090569,35091355..35091634, 35091786..35092131,35094544..35094917)) /locus_tag="TCM_025844" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG041139t1" /codon_start=1 /product="BTB-POZ and MATH domain 4 isoform 1" /protein_id="EOY10497.1" /db_xref="Phytozome:POPTR_0019s05580.1" /db_xref="TAIR:AT3G03740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SRV1" /translation="MPSPLGSPTSSRSVTQTVNGSHRFTIKGYSLAKGMGVGKHIASE SFTVGGYQWAIYFYPDGKNPEDNSTYVSVFVALASEGTDVRALFELTLLDQSGKGKHK VHSHFDRALESGPYTLKYRGSMWGYKRFFRRAMLETSDFLKDDCLKINCTVGVVVSEI DCPRLHPIQVPESDIGAHFGMLLENEEGSDITFNVFGEKFHAHKLVLASRSPVFEAEF SDRMEEDNNEIVVTDMEPKVFKALLHFIYRDTLIDDEEFLGTSSSCMPSVSDALASKL LAAADKYDLPRLRLMCESVLCKDISVNSVANILALADRYHAMDLKSVCLKFAAENLVA VMRSDGFEYLKENCPSLQSELLKTVAGCEEEFSGGGKSRSVWAQFSDGGDTIDRSVRQ QTWENGGEQNRGLWVQLEGGDAGEGSPRQEE" CDS complement(join(35090545..35090569,35090652..35090700, 35091355..35091634,35091786..35092131,35094544..35094917)) /locus_tag="TCM_025844" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG041139t2" /codon_start=1 /product="BTB-POZ and MATH domain 4 isoform 2" /protein_id="EOY10498.1" /db_xref="Phytozome:POPTR_0019s05580.1" /db_xref="TAIR:AT3G03740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SRV1" /translation="MPSPLGSPTSSRSVTQTVNGSHRFTIKGYSLAKGMGVGKHIASE SFTVGGYQWAIYFYPDGKNPEDNSTYVSVFVALASEGTDVRALFELTLLDQSGKGKHK VHSHFDRALESGPYTLKYRGSMWGYKRFFRRAMLETSDFLKDDCLKINCTVGVVVSEI DCPRLHPIQVPESDIGAHFGMLLENEEGSDITFNVFGEKFHAHKLVLASRSPVFEAEF SDRMEEDNNEIVVTDMEPKVFKALLHFIYRDTLIDDEEFLGTSSSCMPSVSDALASKL LAAADKYDLPRLRLMCESVLCKDISVNSVANILALADRYHAMDLKSVCLKFAAENLVG VPEVNEKPKNRERSLSCYALGRF" gene complement(35095563..35100830) /locus_tag="TCM_025845" /note="dbxref CacaoGD:Thecc1EG025845" mRNA complement(join(35095563..35096426,35096538..35096707, 35097171..35097262,35097945..35098106,35098377..35098469, 35098556..35098618,35099084..35099229,35099348..35099505, 35099669..35099891,35100662..35100830)) /locus_tag="TCM_025845" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025814001" /inference="similar to AA sequence:Phytozome:GSVIVT01025814001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9270t2" mRNA complement(join(35095563..35096426,35096538..35096707, 35097171..35097262,35097945..35098106,35098377..35098469, 35098556..35098621,35099084..35099229,35099348..35099505, 35099669..35099891,35100662..35100830)) /locus_tag="TCM_025845" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01025814001" /inference="similar to AA sequence:Phytozome:GSVIVT01025814001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:PASA:2:TSA:puevd3b024994t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9270t2" CDS complement(join(35096119..35096426,35096538..35096707, 35097171..35097262,35097945..35098106,35098377..35098469, 35098556..35098618,35099084..35099229,35099348..35099505, 35099669..35099891,35100662..35100755)) /locus_tag="TCM_025845" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY10499.1" /db_xref="Phytozome:GSVIVT01025814001" /db_xref="TAIR:AT1G28760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TQ33" /translation="MVAFSSPLLLFFFLFPLLFLARASHVTTHFKGIDLASPALDVTP TPLSGHSSVRCSKDVLLCDRVQVSGQPRLKLGSYASCFRVTLAPSVLIPERLHSKIQV CFHQNASLGLCKCENDDWKAVQKGIWHTVMSPYDDRYIDVKFIGEVSGSVTVAVEEDF QQWRLFFLVLGFVLLLLAPFVSSWVPFYYSSSMAIGIFLVIIILLFQGMKLLPTGRKN IFYLTVYVPMLGAGSFLLHQLSALVNSILVNFGLSEEMHNPVAIFVLVGIILSGAALG YWIVRKFVISKDGSVDVGVAQFVKWAMRILATTFIFQSTLDTQLAMVAVASCSAICYL ITSAKRNDHMHQPRSGYGSPWLHQSRQGTIKHGRAEFFSRSPRMDSNRKVWNSPKTSP VWSNSPVKGVVSSPLGEAAIDHQDYYSTFHKTRYRKKFTKQEWEDFSRESTRHALAQL AASPEFTDWMTEHAGRIKLLPCDSSDESVGSKTSSTDEDNEGSNSRFRLFSW" CDS complement(join(35096119..35096426,35096538..35096707, 35097171..35097262,35097945..35098106,35098377..35098469, 35098556..35098621,35099084..35099229,35099348..35099505, 35099669..35099891,35100662..35100755)) /locus_tag="TCM_025845" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY10500.1" /db_xref="Phytozome:GSVIVT01025814001" /db_xref="TAIR:AT1G28760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TQ33" /translation="MVAFSSPLLLFFFLFPLLFLARASHVTTHFKGIDLASPALDVTP TPLSGHSSVRCSKDVLLCDRVQVSGQPRLKLGSYASCFRVTLAPSVLIPERLHSKIQV CFHQNASLGLCKCENDDWKAVQKGIWHTVMSPYDDRYIDVKFIGEVSGSVTVAVEEDF QQWRLFFLVLGFVLLLLAPFVSSWVPFYYSSSMAIGIFLVIIILLFQQGMKLLPTGRK NIFYLTVYVPMLGAGSFLLHQLSALVNSILVNFGLSEEMHNPVAIFVLVGIILSGAAL GYWIVRKFVISKDGSVDVGVAQFVKWAMRILATTFIFQSTLDTQLAMVAVASCSAICY LITSAKRNDHMHQPRSGYGSPWLHQSRQGTIKHGRAEFFSRSPRMDSNRKVWNSPKTS PVWSNSPVKGVVSSPLGEAAIDHQDYYSTFHKTRYRKKFTKQEWEDFSRESTRHALAQ LAASPEFTDWMTEHAGRIKLLPCDSSDESVGSKTSSTDEDNEGSNSRFRLFSW" mobile_element 35102161..35102263 /note="source:scaffold_4_CACTA_0506 6446 6552" /mobile_element_type="transposon:TIR/CACTA" mobile_element 35102644..35103079 /note="source:scaffold_4_CACTA_0505 10643 11084" /mobile_element_type="transposon:TIR/CACTA" gene 35103325..35108063 /locus_tag="TCM_025846" /note="dbxref CacaoGD:Thecc1EG025846" mRNA join(35103325..35103945,35104447..35104911, 35105056..35105196,35105408..35105509,35106168..35106379, 35106560..35106610,35106696..35106765,35107356..35107424, 35107525..35107575,35107665..35108063) /locus_tag="TCM_025846" /product="Peptidase M50 family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s06090.1" /inference="similar to AA sequence:Phytozome:GSVIVT01029948001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05375t00001" mRNA join(35103413..35103945,35104447..35104911, 35105056..35105196,35105408..35105509,35106168..35106379, 35106560..35106612,35106696..35106765,35107353..35107424, 35107525..35107575,35107665..35107947) /locus_tag="TCM_025846" /product="Peptidase M50 family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s06090.1" /inference="similar to AA sequence:Phytozome:GSVIVT01029948001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9264t2; inference alignment:Newbler:10:TSA:cgbaB_g05375t00001" mRNA join(35103415..35103945,35104447..35104911, 35105056..35105196,35105408..35105509,35106168..35106379, 35106560..35106610,35106696..35106765,35107356..35107575, 35107665..35107959) /locus_tag="TCM_025846" /product="Peptidase M50 family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s06090.1" /inference="similar to AA sequence:Phytozome:GSVIVT01029948001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1372t5; inference alignment:Newbler:10:TSA:cgbaB_g05375t00001" mRNA join(35103415..35103945,35104447..35104911, 35105056..35105196,35105408..35105509,35106168..35106333, 35106560..35106610,35106696..35106765,35107356..35107424, 35107525..35107575,35107665..35107955) /locus_tag="TCM_025846" /product="Peptidase M50 family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s06090.1" /inference="similar to AA sequence:Phytozome:GSVIVT01029948001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1372t1; inference alignment:Newbler:10:TSA:cgbaB_g05375t00001" CDS join(35103586..35103945,35104447..35104911, 35105056..35105196,35105408..35105509,35106168..35106379, 35106560..35106610,35106696..35106765,35107356..35107424, 35107525..35107575,35107665..35107823) /locus_tag="TCM_025846" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Peptidase M50 family protein isoform 1" /protein_id="EOY10501.1" /db_xref="Phytozome:GSVIVT01029948001" /db_xref="TAIR:AT5G35220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q949Y5" /translation="MGTLTSCSFSAVNFRSSSSSIFRERVRVEVFESRKVKRNLCLLF TGIISKEVSREKFFKIRCFSGGNNDDGDYTNNDGDVKENNSSSSKESIVTTASPTGET APEERSIGNDPPPSVSSRPPNIAPLGSAYSDFQIDSFKLMELLGPEKVDPSDVKLIKD KLFGYSTFWVTKEESFGDLGEGILFLGNIRGKREDVFTKLQTQLAEIMGDKYNLYMVE EPDSEAPDPRGGPRVSFGLLRKEVSEPGPTTLWQYVIALLLFLLTIGSSVELGIASQI NRLPPEIVKYFTDPNAIEPPDMELLYPFVESALPLAYGVLGVLLFHEVGHFLAAFPKK VKLSIPFFIPNITLGSFGAITQFKSILPDRSTKVDISLAGPFAGAALSFSMFAVGLLL SSNPDAAGDLVQVPSMLFQGSLLLGLISRATLGYAAMHAATVSIHPLVIAGWCGLTTT AFNMLPVGCLDGGRAVQGAFGKGALVGFGLTTYTLLGLGVIGGPLSLPWGLYVLICQR TPEKSCLNDVTEVGTWRKTAVTVAIFLVVLMLLPIWDELAEELGIGLVNTF" CDS join(35103586..35103945,35104447..35104911, 35105056..35105196,35105408..35105509,35106168..35106379, 35106560..35106610,35106696..35106765,35107356..35107439) /locus_tag="TCM_025846" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Peptidase M50 family protein isoform 4" /protein_id="EOY10504.1" /db_xref="Phytozome:GSVIVT01029948001" /db_xref="TAIR:AT5G35220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q949Y5" /translation="MGTLTSCSFSAVNFRSSSSSIFRERVRVEVFESRKVKRNLCLLF TGIISKEVSREKFFKIRCFSGGNNDDGDYTNNDGDVKENNSSSSKESIVTTASPTGET APEERSIGNDPPPSVSSRPPNIAPLGSAYSDFQIDSFKLMELLGPEKVDPSDVKLIKD KLFGYSTFWVTKEESFGDLGEGILFLGNIRGKREDVFTKLQTQLAEIMGDKYNLYMVE EPDSEAPDPRGGPRVSFGLLRKEVSEPGPTTLWQYVIALLLFLLTIGSSVELGIASQI NRLPPEIVKYFTDPNAIEPPDMELLYPFVESALPLAYGVLGVLLFHEVGHFLAAFPKK VKLSIPFFIPNITLGSFGAITQFKSILPDRSTKVDISLAGPFAGAALSFSMFAVGLLL SSNPDAAGDLVQVPSMLFQGSLLLGLISRATLGYAAMHAATVSIHPLVIAGWCGLTTT AFNMLPVGCLDGGRAVQGAFGKGALVGFGLTTYTLLGLGVVCAY" CDS join(35103586..35103945,35104447..35104911, 35105056..35105196,35105408..35105509,35106168..35106379, 35106560..35106612,35106696..35106706) /locus_tag="TCM_025846" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Peptidase M50 family protein isoform 2" /protein_id="EOY10502.1" /db_xref="Phytozome:GSVIVT01029948001" /db_xref="TAIR:AT5G35220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q949Y5" /translation="MGTLTSCSFSAVNFRSSSSSIFRERVRVEVFESRKVKRNLCLLF TGIISKEVSREKFFKIRCFSGGNNDDGDYTNNDGDVKENNSSSSKESIVTTASPTGET APEERSIGNDPPPSVSSRPPNIAPLGSAYSDFQIDSFKLMELLGPEKVDPSDVKLIKD KLFGYSTFWVTKEESFGDLGEGILFLGNIRGKREDVFTKLQTQLAEIMGDKYNLYMVE EPDSEAPDPRGGPRVSFGLLRKEVSEPGPTTLWQYVIALLLFLLTIGSSVELGIASQI NRLPPEIVKYFTDPNAIEPPDMELLYPFVESALPLAYGVLGVLLFHEVGHFLAAFPKK VKLSIPFFIPNITLGSFGAITQFKSILPDRSTKVDISLAGPFAGAALSFSMFAVGLLL SSNPDAAGDLVQVPSMLFQGSLLLGLISRATLGYAAMHAATVSIHPLVIAGWCVA" CDS join(35103586..35103945,35104447..35104911, 35105056..35105196,35105408..35105509,35106168..35106333, 35106560..35106600) /locus_tag="TCM_025846" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Peptidase M50 family protein isoform 3" /protein_id="EOY10503.1" /db_xref="Phytozome:GSVIVT01029948001" /db_xref="TAIR:AT5G35220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q949Y5" /translation="MGTLTSCSFSAVNFRSSSSSIFRERVRVEVFESRKVKRNLCLLF TGIISKEVSREKFFKIRCFSGGNNDDGDYTNNDGDVKENNSSSSKESIVTTASPTGET APEERSIGNDPPPSVSSRPPNIAPLGSAYSDFQIDSFKLMELLGPEKVDPSDVKLIKD KLFGYSTFWVTKEESFGDLGEGILFLGNIRGKREDVFTKLQTQLAEIMGDKYNLYMVE EPDSEAPDPRGGPRVSFGLLRKEVSEPGPTTLWQYVIALLLFLLTIGSSVELGIASQI NRLPPEIVKYFTDPNAIEPPDMELLYPFVESALPLAYGVLGVLLFHEVGHFLAAFPKK VKLSIPFFIPNITLGSFGAITQFKSILPDRSTKVDISLAGPFAGAALSFSMFAVGLLL SSNPDAAGDLVQVPSMLFQGQCMLQQYRFILL" gene <35108947..35111756 /locus_tag="TCM_025848" /note="dbxref CacaoGD:Thecc1EG025848" mRNA join(<35108947..35109746,35110649..35111756) /locus_tag="TCM_025848" /product="Histone-lysine N-methyltransferase SUVR33-9-related protein 3 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029980001" /inference="similar to AA sequence:frave:gene21746" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog weak, intron is medium, protein is partial5; similar to RNA sequence, EST 0.91 coverage; inference alignment:PASA:2:TSA:puevd3b024996t1a2; inference alignment:Newbler:10:TSA:cgbaB_g01249t00002" CDS join(<35108948..35109746,35110649..35110731) /locus_tag="TCM_025848" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene21746" /codon_start=1 /product="Histone-lysine N-methyltransferase SUVR33-9-related protein 3 isoform 2" /protein_id="EOY10506.1" /db_xref="TAIR:AT3G03750.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I631" /translation="QLERSKPKQTKPDHSPVSMLPPPPKKSHLNELGPKSQGLNHPLF QCAVLILPWLNPQELATISFTCKTLHQLALSVTLHRSLDASRSFENLPIPFHNTVDQY PYAYFIYTPSQIIPSPSFPYLQRQSWGPNNLLSQLGPNSSQGQALSGSSSSDAEMGCA YFQRSRVADDSMWVSVVGESACVCERCLKVTEDNVIGCPCMELEGAEWMGILSECGPS CRCGLECGNRPSQRGIRVQLKIVRDVRKGWSLYAAQWIQRGQFVCEYAVMHSWYMICI FGDQSLNAVLFAIWLDR" mRNA join(35108970..35109746,35110728..35111756) /locus_tag="TCM_025848" /product="Histone-lysine N-methyltransferase SUVR33-9-related protein 3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01029980001" /inference="similar to AA sequence:Phytozome:POPTR_0013s06080.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01249t00002" CDS join(35109002..35109746,35110728..35111116) /locus_tag="TCM_025848" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Histone-lysine N-methyltransferase SUVR33-9-related protein 3 isoform 1" /protein_id="EOY10505.1" /db_xref="Phytozome:POPTR_0013s06080.1" /db_xref="TAIR:AT3G03750.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I631" /translation="MLPPPPKKSHLNELGPKSQGLNHPLFQCAVLILPWLNPQELATI SFTCKTLHQLALSVTLHRSLDASRSFENLPIPFHNTVDQYPYAYFIYTPSQIIPSPSF PYLQRQSWGPNNLLSQLGPNSSQGQALSGSSSSDAEMGCAYFQRSRVADDSMWVSVVG ESACVCERCLKVTEDNVIGCPCMELEGAEWMGILSECGPSCRCGLECGNRPSQRGIRV QLKIVRDVRKGWSLYAAQWIQRGQFVCEYAGELLTTKEARRRQQIYDELASGGHFSSA LLVVREHLPSGKACLRINIDATRVGNVARFINHSCDGGNLSTVLVRSSGALLPRLCFF ASKDINEDEELTFSYGEIRVKPKGLQCFCGSSCCLGTLPSEHT" gene 35112245..35114127 /locus_tag="TCM_025849" /note="dbxref CacaoGD:Thecc1EG025849" mRNA join(35112245..35112727,35113539..35114127) /locus_tag="TCM_025849" /product="LOB domain-containing protein 20" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s06070.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004106t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s06070.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc5475t1" CDS join(35112344..35112727,35113539..35113865) /locus_tag="TCM_025849" /note="paralog of Thecc1EG004106t1" /codon_start=1 /product="LOB domain-containing protein 20" /protein_id="EOY10507.1" /db_xref="Phytozome:POPTR_0013s06070.1" /db_xref="TAIR:AT3G03760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SI79" /translation="MAEPQCHGMSETRRKGTSKHATMLVEADEPVVAAPAPVPAAPCG ACKFLRRKCISGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRHDAVVT ISYEAQARLSDPVYGCVSTILSLQQQVASLQAELAMVQNQLINSRFAMANALQSSQQQ QQQQQQHIGLLQPAYSNNSSASNSLIHMSNFTSSFDLVAETAPSSQSLDRLDQLSRPC HDDEDDEEESRIPAIFRQ" gene 35114305..35118302 /locus_tag="TCM_025850" /note="dbxref CacaoGD:Thecc1EG025850" mRNA join(35114305..35114719,35114820..35114845, 35115816..35115905,35116009..35116097,35118137..35118302) /locus_tag="TCM_025850" /product="Ubiquiting-conjugating enzyme 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s06060.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG013869t1" /inference="similar to AA sequence:Phytozome:GSVIVT01020056001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14714t2" CDS join(35114595..35114719,35114820..35114845, 35115816..35115905,35116009..35116097,35118137..35118265) /locus_tag="TCM_025850" /note="paralog of Thecc1EG013869t1" /codon_start=1 /product="Ubiquiting-conjugating enzyme 2" /protein_id="EOY10508.1" /db_xref="Phytozome:GSVIVT01020056001" /db_xref="TAIR:AT2G02760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P63146" /translation="MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPD DTPWDGGTFKLTLQFTEDYPNKPPTVRFISRMFHPNIYADGSICLDILQNQWSPIYDV AAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD" gene complement(35119101..35125968) /locus_tag="TCM_025852" /note="dbxref CacaoGD:Thecc1EG025852" mRNA complement(join(35119101..35119561,35119741..35120033, 35120636..35120747,35121144..35121193,35121314..35121519, 35121946..35122186,35122806..35122939,35123260..35124794, 35125074..35125435)) /locus_tag="TCM_025852" /product="Leucine-rich repeat protein kinase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s05520.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044501t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s05520.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g06556t00001; alternateUTRof:Thecc1EG025852t1; inference alignment:Newbler:10:TSA:cgbaL_g06556t00001" mRNA complement(join(35119106..35119377,35119494..35119561, 35119741..35120033,35120636..35120747,35121144..35121193, 35121314..35121519,35121946..35122186,35122806..35122939, 35123260..35124794,35125074..35125119,35125389..35125968)) /locus_tag="TCM_025852" /product="Leucine-rich repeat protein kinase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s05520.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044501t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s05520.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g06556t00001" CDS complement(join(35119755..35120033,35120636..35120747, 35121144..35121193,35121314..35121519,35121946..35122186, 35122806..35122939,35123260..35124613)) /locus_tag="TCM_025852" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG044501t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein isoform 1" /protein_id="EOY10509.1" /db_xref="Phytozome:POPTR_0019s05520.1" /db_xref="TAIR:AT3G03770.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A5ANY5" /translation="MPVLCMLPMAKGFKHLFLVLATIFLLIHHSEQLQSSQTHTLLRL KLLLNYPDILSSWNSTIDFCNTEPTSQVTVVCYEDSITQLHIIGIKGTPLLPRNFSMD SFVTTLVKLPDLKVLTLVSFGLWGPLPGKIARLSSLEILNMTSNFLYGAIPHELSTVT GLQTLILDDNMFSGWLPEWLGSFPILTVLSLRKNLFNGSLPDSFSSLKNLRVLALSHN HFYGEVPDFSSLTNLQELDLEENAFGPRFPQLGNKLVRLILGKNRFRSGIPSELSSYY QLQWLDLSFNRFVGPFPSTLLSLPSVTYVNTANNKLTGKLFENTSCNVELGFVDLSSN LLTGHLPSCLSDSKDRVFLYARNCLATGKENQHPLSFCRNEALAVGILPQHKKSKLSK VALSLGITGGIIGGIVLLGLIFIFGRRLNAKKTTNKPTTRLIAEKASSTGYTSKLLSD ARYISQTMKLGALGLPAYRTFSLEELEDATNNFDTTAFMGEGSQGQMYRGWLKDGTFV AIRCLKMKKSHSTQSLMHHVELISKLRHRHLVSALGHCFECYLDDSSVSRIFLIFEYV PNGTLRSWVSEEHARRSLTWAQRISAAIGIAKGIQFLHTGIVPGVYSNKLKITDILLD QNLIAKISSYNLPLLAESAGKVGHGTFALPKDPSNSARVSYDYKVDVYDFGVILLEMI LGRPLKTKNEVQILKNQLQAILATDDVTRRSVADPAAQKSCSDQSLKTMMEICVRCLL KDPTERPSVEDVLWNLQFAAQVQDAWRGDSQSSEGSPGSPSQAPHLRVAFR" CDS complement(join(35119755..35120033,35120636..35120747, 35121144..35121193,35121314..35121519,35121946..35122186, 35122806..35122939,35123260..35124613)) /locus_tag="TCM_025852" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG044501t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein isoform 1" /protein_id="EOY10510.1" /db_xref="Phytozome:POPTR_0019s05520.1" /db_xref="TAIR:AT3G03770.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A5ANY5" /translation="MPVLCMLPMAKGFKHLFLVLATIFLLIHHSEQLQSSQTHTLLRL KLLLNYPDILSSWNSTIDFCNTEPTSQVTVVCYEDSITQLHIIGIKGTPLLPRNFSMD SFVTTLVKLPDLKVLTLVSFGLWGPLPGKIARLSSLEILNMTSNFLYGAIPHELSTVT GLQTLILDDNMFSGWLPEWLGSFPILTVLSLRKNLFNGSLPDSFSSLKNLRVLALSHN HFYGEVPDFSSLTNLQELDLEENAFGPRFPQLGNKLVRLILGKNRFRSGIPSELSSYY QLQWLDLSFNRFVGPFPSTLLSLPSVTYVNTANNKLTGKLFENTSCNVELGFVDLSSN LLTGHLPSCLSDSKDRVFLYARNCLATGKENQHPLSFCRNEALAVGILPQHKKSKLSK VALSLGITGGIIGGIVLLGLIFIFGRRLNAKKTTNKPTTRLIAEKASSTGYTSKLLSD ARYISQTMKLGALGLPAYRTFSLEELEDATNNFDTTAFMGEGSQGQMYRGWLKDGTFV AIRCLKMKKSHSTQSLMHHVELISKLRHRHLVSALGHCFECYLDDSSVSRIFLIFEYV PNGTLRSWVSEEHARRSLTWAQRISAAIGIAKGIQFLHTGIVPGVYSNKLKITDILLD QNLIAKISSYNLPLLAESAGKVGHGTFALPKDPSNSARVSYDYKVDVYDFGVILLEMI LGRPLKTKNEVQILKNQLQAILATDDVTRRSVADPAAQKSCSDQSLKTMMEICVRCLL KDPTERPSVEDVLWNLQFAAQVQDAWRGDSQSSEGSPGSPSQAPHLRVAFR" gene complement(35129667..35133358) /locus_tag="TCM_025853" /note="dbxref CacaoGD:Thecc1EG025853" mRNA complement(join(35129667..35130293,35130394..35130597, 35130687..35130843,35131272..35131393,35132850..35133358)) /locus_tag="TCM_025853" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s05510.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018396t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s05510.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Newbler:10:TSA:cgbaL_g14415t00001" mRNA complement(join(35129738..35130293,35130390..35130597, 35130687..35130843,35131272..35131393,35132850..35133251)) /locus_tag="TCM_025853" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s05510.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018396t3" /inference="similar to AA sequence:Phytozome:POPTR_0019s05510.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc2039t3; inference alignment:Newbler:10:TSA:cgbaL_g14415t00001" CDS complement(join(35130160..35130293,35130394..35130597, 35130687..35130843,35131272..35131393,35132850..35133096)) /locus_tag="TCM_025853" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG018396t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY10511.1" /db_xref="Phytozome:POPTR_0019s05510.1" /db_xref="TAIR:AT5G39890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPT6" /translation="MMVEAGGLVEQRKDTMTMRHVNSKVRYVNKPIKKLRRKKRSKPV ASRVPRLLPELFVACREVFKGPGNVPPPSDVDKLCSILDRMKPEDVGLSKNLQFFKAR GAVTGTPRVTYTTIYQCDEFSLCIFFLPEKAVIPLHNHPGMTVFSKLLLGKMHIKSYD WVDPVHSEDPVPPSQPRLARLKADSVFTAPCDTSVLYPTAGGNIHQFTAITPCAVLDV LGPPYSKEDDRDCSYYRDVPCSAFPNGETTVSEEVEGDLFGWLEEIQVPENSKMDRIE YLGPQIAETSF" CDS complement(join(35130272..35130293,35130390..35130597, 35130687..35130843,35131272..35131393,35132850..35133096)) /locus_tag="TCM_025853" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG018396t3" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY10512.1" /db_xref="Phytozome:POPTR_0019s05510.1" /db_xref="TAIR:AT5G15120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPT6" /translation="MMVEAGGLVEQRKDTMTMRHVNSKVRYVNKPIKKLRRKKRSKPV ASRVPRLLPELFVACREVFKGPGNVPPPSDVDKLCSILDRMKPEDVGLSKNLQFFKAR GAVTGTPRVTYTTIYQCDEFSLCIFFLPEKAVIPLHNHPGMTVFSKLLLGKMHIKSYD WVDPVHSEDPVPPSQPRLARLKADSVFTAPCDTSVLYPTAGGNIHQFTAITPCAVLDV LGPPYSKEDDRDCSYYRDVPCSAFPSKWRNYSE" gene 35134495..35136304 /locus_tag="TCM_025854" /note="dbxref CacaoGD:Thecc1EG025854" mRNA join(35134495..35134599,35134905..35135073, 35135324..35136304) /locus_tag="TCM_025854" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.22 coverage" CDS join(35134506..35134599,35134905..35135073, 35135324..35135432) /locus_tag="TCM_025854" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10513.1" /translation="MYSNINITLLLKLILKMVHLLNDLPFHHIFIYFGCEKKRQKQLA CWEDTGGHVSSSRSSPPPSTAVHPCNVKLSLDWTPLSKTRDRERHMGDRGVAKRGMHQ GTFQHQTNLFSTLLSLKTFRH" gene complement(35136374..35139330) /locus_tag="TCM_025855" /note="dbxref CacaoGD:Thecc1EG025855" mRNA complement(join(35136374..35136722,35136807..35137002, 35137355..35137504,35137625..35137745,35138970..35139330)) /locus_tag="TCM_025855" /product="Membrin, putative" /inference="alignment:exonerate- protein:2:ricco:30072.m000958" /inference="similar to AA sequence:ricco:30072.m000958" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02390t00002" CDS complement(join(35136841..35137002,35137355..35137504, 35137625..35137745,35138970..35139223)) /locus_tag="TCM_025855" /note="dbxref ricco:30072.m000958" /codon_start=1 /product="Membrin, putative" /protein_id="EOY10514.1" /db_xref="TAIR:AT2G36900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SI82" /translation="MAAIEGGGTLSEVYQSARKLLLRARDGIERLERLESSVSAGGGL DSPELSFAVKKDISQIHSLCSDMDRLWRSIAAKSQRDLWKRKVEQMVEEADSLKESLD KYSMRNQRRMLEAKERAELLGRANGESAHVLRIFDEEAQAMQSVRNSSRMLQESFATG TAILSKYSEQRERLKRAQRKALDVLNTVGLSNSVLRLIERRNRVDRWIKYVGMVLTVI ILYFFWKWTR" gene complement(35137475..35147030) /locus_tag="TCM_025856" /note="dbxref CacaoGD:Thecc1EG025856" mRNA complement(join(35137475..35137504,35137625..35137745, 35138970..35140467,35140715..35140816,35140898..35141194, 35141684..35141853,35141937..35142024,35142203..35142248, 35142353..35142435,35142916..35143024,35143615..35143665, 35143778..35143857,35144368..35144451,35144526..35144684, 35144908..35145063,35145997..>35146570)) /locus_tag="TCM_025856" /product="Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s05500.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s05950.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc181t8; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc181t8; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc180t12" mRNA complement(join(35137718..35137767,35138970..35140467, 35140715..35140816,35140898..35141194,35141684..35141853, 35141937..35142024,35142203..35142248,35142353..35142435, 35142916..35143024,35143615..35143665,35143778..35143857, 35144368..35144451,35144526..35144684,35144908..35145063, 35145997..>35146570)) /locus_tag="TCM_025856" /product="Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s05500.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s05950.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc181t2; alternateUTRof:Thecc1EG025856t2; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc181t8; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc180t12" mRNA complement(join(35139411..35140467,35140715..35140816, 35140898..35141194,35141684..35141853,35141937..35142024, 35142203..35142248,35142353..35142435,35142916..35143024, 35143615..35143665,35143778..35143857,35144368..35144451, 35144526..35144684,35144908..35145063,35145997..35147030)) /locus_tag="TCM_025856" /product="Polynucleotidyl transferase, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s05500.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s05950.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc181t8" CDS complement(join(35139844..35140467,35140715..35140816, 35140898..35141194,35141684..35141853,35141937..35142024, 35142203..35142248,35142353..35142435,35142916..35143024, 35143615..35143665,35143778..35143857,35144368..35144451, 35144526..35144684,35144908..35145063,35145997..35146710)) /locus_tag="TCM_025856" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Polynucleotidyl transferase, putative isoform 1" /protein_id="EOY10515.1" /db_xref="Phytozome:POPTR_0013s05950.1" /db_xref="TAIR:AT5G35910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I623" /translation="MESQSEPSKSFQSLQALASGPLSSSVSSLSSSSQTLPSNQDFHF FYNFDQFKLPIDQIDNTSHSLLESIGSSAKAWGSNKAINFPNKIENIADDEAYDWTVN IIDECLERVDLYTDEFQKIRKKQEETGRVNGADADTDGFQVVHGKKKKKGAGGLVRDS AGDIVGGKECGASSSSEVKVKKGALAAGTTAKAKVPFHIPTIRRPQEEYNILVNNSNQ PFEHVWLQRSEDGQRFVHPLDKLSVMDFVDTDIANIEPINPPSIESTPFKLVEEVKDL KELVAKLLSVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRIHVGPYLRE VFKDPTKKKVMHGADRDIVWLQRDFGIYLCNLFDTGQASRVLKLERNSLEYLLHHFCG VTANKEYQNADWRLRPLPDEMIRYAREDTHYLLYIYDLMRIKLLSMPKESEHCDAPLV EVYKRSSEVCLQLYEKELLTENSYLHIYGLLGAGFNAEQLAIVAALCEWRDIIARAED ESTGYVLPNKTLLEIAKQMPVTASKLRRLLKSKHPYVERNLGSVVTIIRHSMQNAIVF EEAAQQLRMGRVLNASEEHVVVNEGAKILPPETSTDLTMANDKTEITDGGMVGPACPQ NNGSSIAGSDRNKNRFSFEQPIANGPSMYARESLAISGQSGEINACTVMPPSAKIDTG ATVQVLKKPSRGFGAFLGNAATKKKFEADKKDKEESKLEQIRSSVNLSFHSFLGTEEQ SKPAVKEPNRVPEVSQPEEPPAVVATESTLEDIIMLEDNSNKEESIDGSPEVTGTPGG ESSVAPSFETNKEDMAISLSELSTSFEQCFETSNQNRKMVKVKKSKEPSGLQIKPFDY EAARKQARFGEDAEEESGSQLNSAGKKKCSAVGRLQIEDGSKQFPQARRRQAFPASGN RSATFR" CDS complement(join(35139844..35140467,35140715..35140816, 35140898..35141194,35141684..35141853,35141937..35142024, 35142203..35142248,35142353..35142435,35142916..35143024, 35143615..35143665,35143778..35143857,35144368..35144451, 35144526..35144684,35144908..35145063, 35145997..>35146569)) /locus_tag="TCM_025856" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain, putative isoform 2" /protein_id="EOY10516.1" /db_xref="Phytozome:POPTR_0013s05950.1" /db_xref="TAIR:AT5G35910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I623" /translation="FDQFKLPIDQIDNTSHSLLESIGSSAKAWGSNKAINFPNKIENI ADDEAYDWTVNIIDECLERVDLYTDEFQKIRKKQEETGRVNGADADTDGFQVVHGKKK KKGAGGLVRDSAGDIVGGKECGASSSSEVKVKKGALAAGTTAKAKVPFHIPTIRRPQE EYNILVNNSNQPFEHVWLQRSEDGQRFVHPLDKLSVMDFVDTDIANIEPINPPSIEST PFKLVEEVKDLKELVAKLLSVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLK LRIHVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNLFDTGQASRVLKLERN SLEYLLHHFCGVTANKEYQNADWRLRPLPDEMIRYAREDTHYLLYIYDLMRIKLLSMP KESEHCDAPLVEVYKRSSEVCLQLYEKELLTENSYLHIYGLLGAGFNAEQLAIVAALC EWRDIIARAEDESTGYVLPNKTLLEIAKQMPVTASKLRRLLKSKHPYVERNLGSVVTI IRHSMQNAIVFEEAAQQLRMGRVLNASEEHVVVNEGAKILPPETSTDLTMANDKTEIT DGGMVGPACPQNNGSSIAGSDRNKNRFSFEQPIANGPSMYARESLAISGQSGEINACT VMPPSAKIDTGATVQVLKKPSRGFGAFLGNAATKKKFEADKKDKEESKLEQIRSSVNL SFHSFLGTEEQSKPAVKEPNRVPEVSQPEEPPAVVATESTLEDIIMLEDNSNKEESID GSPEVTGTPGGESSVAPSFETNKEDMAISLSELSTSFEQCFETSNQNRKMVKVKKSKE PSGLQIKPFDYEAARKQARFGEDAEEESGSQLNSAGKKKCSAVGRLQIEDGSKQFPQA RRRQAFPASGNRSATFR" CDS complement(join(35139844..35140467,35140715..35140816, 35140898..35141194,35141684..35141853,35141937..35142024, 35142203..35142248,35142353..35142435,35142916..35143024, 35143615..35143665,35143778..35143857,35144368..35144451, 35144526..35144684,35144908..35145063, 35145997..>35146569)) /locus_tag="TCM_025856" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain, putative isoform 2" /protein_id="EOY10517.1" /db_xref="Phytozome:POPTR_0013s05950.1" /db_xref="TAIR:AT5G35910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I623" /translation="FDQFKLPIDQIDNTSHSLLESIGSSAKAWGSNKAINFPNKIENI ADDEAYDWTVNIIDECLERVDLYTDEFQKIRKKQEETGRVNGADADTDGFQVVHGKKK KKGAGGLVRDSAGDIVGGKECGASSSSEVKVKKGALAAGTTAKAKVPFHIPTIRRPQE EYNILVNNSNQPFEHVWLQRSEDGQRFVHPLDKLSVMDFVDTDIANIEPINPPSIEST PFKLVEEVKDLKELVAKLLSVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLK LRIHVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNLFDTGQASRVLKLERN SLEYLLHHFCGVTANKEYQNADWRLRPLPDEMIRYAREDTHYLLYIYDLMRIKLLSMP KESEHCDAPLVEVYKRSSEVCLQLYEKELLTENSYLHIYGLLGAGFNAEQLAIVAALC EWRDIIARAEDESTGYVLPNKTLLEIAKQMPVTASKLRRLLKSKHPYVERNLGSVVTI IRHSMQNAIVFEEAAQQLRMGRVLNASEEHVVVNEGAKILPPETSTDLTMANDKTEIT DGGMVGPACPQNNGSSIAGSDRNKNRFSFEQPIANGPSMYARESLAISGQSGEINACT VMPPSAKIDTGATVQVLKKPSRGFGAFLGNAATKKKFEADKKDKEESKLEQIRSSVNL SFHSFLGTEEQSKPAVKEPNRVPEVSQPEEPPAVVATESTLEDIIMLEDNSNKEESID GSPEVTGTPGGESSVAPSFETNKEDMAISLSELSTSFEQCFETSNQNRKMVKVKKSKE PSGLQIKPFDYEAARKQARFGEDAEEESGSQLNSAGKKKCSAVGRLQIEDGSKQFPQA RRRQAFPASGNRSATFR" mobile_element 35140633..35140668 /note="source:scaffold_3_CACTA_0382 12079 12114" /mobile_element_type="transposon:TIR/CACTA" mobile_element 35145621..35145725 /note="source:CACAO_M_E52955_F369_scaffold_8 910 1017" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(35145678..35145731) /note="source:CACAO_on_S_E58_scaffold_2 11618 11672" /mobile_element_type="transposon:TIR/Mutator" gene 35147081..35159766 /locus_tag="TCM_025857" /note="dbxref CacaoGD:Thecc1EG025857" mRNA join(35147081..35147178,35148734..35148897, 35150330..35150467,35150868..35150897,35150978..35151203, 35151819..35151978,35152514..35152545,35152995..35153040, 35155059..35155310,35155397..35155755,35157887..35158428, 35159731..35159766) /locus_tag="TCM_025857" /product="HSP20-like chaperones superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s05920.2" /inference="similar to AA sequence:Phytozome:Glyma17g24150.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14709t1" mobile_element complement(35147285..35147446) /note="source:CACAO_PIF_E119_scaffold_3 4520 4675" /mobile_element_type="transposon:TIR/PIF-Harbinger" CDS join(35148872..35148897,35150330..35150467, 35150868..35150897,35150978..35151203,35151819..35151978, 35152514..35152545,35152995..35153040,35155059..35155063) /locus_tag="TCM_025857" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="HSP20-like chaperones superfamily protein isoform 1" /protein_id="EOY10518.1" /db_xref="Phytozome:Glyma17g24150.1" /db_xref="TAIR:AT3G03773.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPT4" /translation="MFGLKLMLRPPQPKTQLNFEAFEFVEPPPSKPSVFAFLFIFCSL LLLLQAPSNMSVIKIEELAIINSFFIFLVLFFVFSRHPEVLWAQRSDKVYLTISLPDA KDISVICDPQGLFSFSAMGVQGESFDFSLELFGKIVPEGCKTNVGLRNIICSIQKEEK GWWKRLLKSEEKPAPYIKVDWNKWCDEDEEESNSDLASDDDDAMYVGQDDESSDDEGL LS" mobile_element 35149058..35149136 /note="source:CACAO_LINE_E_82_scaffold_2 561 639" /mobile_element_type="retrotransposon:LINE/L1" mRNA join(<35150302..35150467,35151020..35151203, 35151819..35151978,35152514..35152545,35152995..35153040, 35157887..35158376) /locus_tag="TCM_025857" /product="HSP20-like chaperones superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s05920.2" /inference="similar to AA sequence:Phytozome:Glyma17g24150.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.68 coverage; inference alignment:Newbler:10:TSA:cgbaB_g10895t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14709t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc571t4_C1" CDS join(<35150304..35150467,35151020..35151203, 35151819..35151978,35152514..35152545,35152995..35153040, 35157887..35157921) /locus_tag="TCM_025857" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="HSP20-like chaperones superfamily protein isoform 2" /protein_id="EOY10519.1" /db_xref="Phytozome:Glyma17g24150.1" /db_xref="TAIR:AT3G03773.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPT4" /translation="VCFWLTSIRPPQPKTQLNFEAFEFVEPPPSKPSVFAFLFIFCSL LLLLQAPSNMSRHPEVLWAQRSDKVYLTISLPDAKDISVICDPQGLFSFSAMGVQGES FDFSLELFGKIVPEGCKTNVGLRNIICSIQKEEKGWWKRLLKSEEKPAPYIKVDWNKW CDEDEEESNSDLASDDDDAMYVGQDDESSDDEGLLYLPDLEKARGN" mobile_element 35155730..35155926 /note="source:scaffold_5_CACTA_0599 10705 10898" /mobile_element_type="transposon:TIR/CACTA" gene complement(35159643..35165751) /locus_tag="TCM_025858" /note="dbxref CacaoGD:Thecc1EG025858" mRNA complement(join(35159643..35160525,35161229..35161478, 35161597..35161709,35162006..35162570,35162980..35163157, 35163281..35163414,35164025..35164194,35164355..35164456, 35164686..35164914,35165507..35165751)) /locus_tag="TCM_025858" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30072.m000961" /inference="similar to AA sequence:Phytozome:POPTR_0013s05930.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc4555t2" CDS complement(join(35160298..35160525,35161229..35161478, 35161597..35161709,35162006..35162570,35162980..35163157, 35163281..35163414,35164025..35164194,35164355..35164456, 35164686..35164914,35165507..35165565)) /locus_tag="TCM_025858" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10520.1" /db_xref="Phytozome:POPTR_0013s05930.1" /db_xref="TAIR:AT2G21720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IHL4" /translation="MVQLKHLSSIANHVLQRSAEKLGTSVDNLAEEFDAGWKPEVGDY SRKLVEFCSSKALIKLCQNIEERISNASFSRFTYDMMLAWEKPNAVDEESQTESIAKE KEDIKSPVEVPLEHDDIPLFYSDLMPLLVNDEPSVAEDAFVWLGSLVPLVADIVNGRF TFETLTAPTGNRLFFPAYDKFLKEIDDRMKHLQKQAKPKGVELADDEFILHVEGTAST QRVVRHIGGTSWPGRLTLTNYALYFEASGVVTYEDALKIDLSRDIDHGVKPAATGPWG APLFDKAIIYESPELPEGVVLEFPEITSSTRRDHWLALTKEVLLMHKFLSEFKVECPI QAWEMHARTILSIIRLHAAREMLRISPPNPTKFLIFALYDELPKGDYVLEQLSESLKR LNSGQPCSASSILRRMNLSESIASSLEAKAVTDEVRKTFAGGEYHNKTSLETAINQTR REEREAAIAKSAIEGLKEEGISENALILMELLKPLKSVFLWFQQILSWERPATTLAVA AAIILIAYKEWVGKAMSSGLLLVLAKMIRARQERLKDKQKEIVVCTASDQTASTRENI VSAHYGFMTICGIIQEATVTILKLHSILVSRAHKHAERVMLAMIGLAILLAVVPLKYL IMTAVFHSAIMTSKLGKYIRNNQGERRLKEWWDSIPPTPVRIVDKAPACPK" gene 35165932..35171529 /locus_tag="TCM_025859" /note="dbxref CacaoGD:Thecc1EG025859" mRNA join(35165932..35166128,35166543..35166652, 35167623..35167757,35168742..35168897,35169283..35169366, 35169561..35169607,35169698..35169771,35169884..35169942, 35170436..35170495,35170793..35170873,35171044..35171093, 35171286..35171529) /locus_tag="TCM_025859" /product="Potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma05g10960.1" /inference="similar to AA sequence:ricco:30072.m000962" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1016t4" CDS join(35166083..35166128,35166543..35166652, 35167623..35167757,35168742..35168897,35169283..35169366, 35169561..35169607,35169698..35169771,35169884..35169942, 35170436..35170495,35170793..35170873,35171044..35171093, 35171286..35171292) /locus_tag="TCM_025859" /note="dbxref ricco:30072.m000962" /codon_start=1 /product="Potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein" /protein_id="EOY10521.1" /db_xref="TAIR:AT5G55000.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I620" /translation="MMKDSDLSSLIRLNIGGKKFCTTIDTLTCREPESMLAAMFSGRH TLCQDSEKGYVFVDRDGKHFRHILNWLRDGVVPTLTDSGYSELIREAEYYQLLGLIEG ISSVLNKRKEDDDLGAELTRTDIIKCIQSERVRFRGVNLSGLDLSKLDLSFVDFSFAC LKSVFFSRANLQCAKFRDVDAEGSIFHNATLRECEFTGANLRGALLAGANLQSANLQD ACLIDCSFCGADLRSAHLQTADLTNANLEGANLEGANLKGAKLNNANLKGANLQRAYL RHVNLRDTHLEGAKLDGANLLGAIRQ" mobile_element complement(35171050..35171254) /note="source:CACAO_M_S_E14849_F156_scaffold_2 666 856" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 35171119..35171290 /note="source:scaffold_6_CACTA_0712 1317 1489" /mobile_element_type="transposon:TIR/CACTA" gene 35175186..35175886 /locus_tag="TCM_025860" /note="dbxref CacaoGD:Thecc1EG025860" mRNA join(35175186..35175596,35175764..35175886) /locus_tag="TCM_025860" /product="Uncharacterized protein isoform 1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14712t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14712t1" mRNA join(<35175192..35175596,35175764..35175836) /locus_tag="TCM_025860" /product="Uncharacterized protein isoform 2" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog weak, intron is medium, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00002t00001_C1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14712t1" CDS <35175193..35175546 /locus_tag="TCM_025860" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY10523.1" /translation="NQKIYQDTREEKKEKERSEMAGIMHKIGETLHMGDNKKEEEKHK GEGQHGHGGECKEGHHGGEHKEGQHKEGMMDKIKDKIHGGSAEHGQDGEKKKKKKEKK KHEDGHESSSSSDSD" CDS 35175250..35175546 /locus_tag="TCM_025860" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY10522.1" /translation="MAGIMHKIGETLHMGDNKKEEEKHKGEGQHGHGGECKEGHHGGE HKEGQHKEGMMDKIKDKIHGGSAEHGQDGEKKKKKKEKKKHEDGHESSSSSDSD" mobile_element 35177954..35177996 /note="source:CACAO_M_E4221_F305_scaffold_2 1490 1531" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 35180678..35182867 /locus_tag="TCM_025861" /note="dbxref CacaoGD:Thecc1EG025861" mRNA 35180678..35182867 /locus_tag="TCM_025861" /product="Hermes" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s05860.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s05860.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc5031t1" CDS 35180948..35182564 /locus_tag="TCM_025861" /codon_start=1 /product="Hermes" /protein_id="EOY10524.1" /db_xref="Phytozome:POPTR_0013s05860.1" /db_xref="TAIR:AT5G13530.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D3J162" /translation="MDRLISLEPSNLVAVRIEPGQKCYGELTLRNVMYTMPVAFRLQP LNKGRYTVKPQSGIIAPLGTQTVEIVYHLPPGSLLPDSFPLSDDSFLLHSVVVPGAAI KDSTSSFDAVPNDWFTTKKKQVFIDSGIKIMFVGSPVLVQLVMDGSMDEIRDVLERSD PAWNPADSVDSYGQTLLHLAIAQSRPDIVQLLLEFEPDVEFQSQSGSTPLEAAAGCGE ELIVELLLAHKASSERSKSSSWGPIHLAAIGGHLEVLRLLLLKGADVDALTKDGNTSL HLAVEERRKDCTRLLLANGATLDVRNTRDGETPLHIAAGLGDEQMVKLLLQKGANKEI RNKAGKTVYDVAAEYGHIRLFDALKLGDSLCLAARKGEVRNIQRLIENGAVINGRDQH GWTALHRASFKGRIDAVKMLIDKGIDVDSKDDDGYTALHCAVESGHTDVVELLVKKGA DVEARTNKGVTALQIADSLHYAGISRILIHGGATKDGMPQVAAMPVSIPFGNGKMGKE NETKAVMKRKPSRARALRGSFDRSLPLAVI" gene 35193266..35199764 /locus_tag="TCM_025862" /note="dbxref CacaoGD:Thecc1EG025862" mRNA join(35193266..35193654,35194895..35195247, 35195344..35195431,35196010..35196137,35196226..35196617, 35196725..35196888,35197049..35197129,35197247..35197413, 35197501..35197606,35197708..35197958,35198054..35198255, 35198362..35199284) /locus_tag="TCM_025862" /product="Cobalamin-independent synthase family protein isoform 1" /inference="alignment:exonerate- protein:2:frave:gene08023.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041152t1" /inference="similar to AA sequence:ricco:30072.m000966" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11002t00001" mRNA join(35193720..35193896,35194895..35195247, 35195344..35195431,35196010..35196137,35196226..35196617, 35196725..35196888,35197049..35197129,35197247..35197413, 35197501..35197606,35197708..35197958,35198054..35198255, 35198362..35199764) /locus_tag="TCM_025862" /product="Cobalamin-independent synthase family protein isoform 1" /inference="alignment:exonerate- protein:2:frave:gene08023.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041152t1" /inference="similar to AA sequence:ricco:30072.m000966" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:PASA:2:TSA:puevd3b025010t1a2; alternateUTRof:Thecc1EG025862t1; inference alignment:Newbler:10:TSA:cgbaL_g11002t00001" CDS join(35194898..35195247,35195344..35195431, 35196010..35196137,35196226..35196617,35196725..35196888, 35197049..35197129,35197247..35197413,35197501..35197606, 35197708..35197958,35198054..35198255,35198362..35198730) /locus_tag="TCM_025862" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30072.m000966; paralog of Thecc1EG041152t1" /codon_start=1 /product="Cobalamin-independent synthase family protein isoform 1" /protein_id="EOY10525.1" /db_xref="TAIR:AT5G17920.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O50008" /translation="MASHIVGYPRMGPKRELKFALESFWDKKSSAEDLQKVAADLRSS IWKQMADAGIKYIPSNTFSYYDQVLDTTSMLGAVPPRYSWNGGEIGFDTYFSMARGNA SVPAMEMTKWFDTNYHFIVPELGPDVNFSYASHKAVDEYKEAKALGVDTVPVLIGPVS YLLLSKPAKGVEKTFSLLSLLPKIIPVYKEVISELKAAGASWIQFDEPTLVLDLDSYK LEAFTAAYADLESTLSGLNVLVETYFADLTAEAFKTLCGLKGVTAYGVDLVRGTQTIG LIKSDFPKGKYLFAGVVDGRNIWANDLASSVNTLQELEAVVGKDKLVVSSSCSLLHTA VDLVNETKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEAFFSANAAALASRKSSPR VTNEAVQKAAAALKSSDHRRATNVSARLDAQQKKLNLPVLPTTTIGSFPQTLELRRVR REFKAKKISEDVYVKAIKEEIKKVVDLQEELDIDVLVHGEPERNDMVEYFGEQLSGFA FTVNGWVQSYGSRCVKPPIIYGDVSRPNPMTVFWSSTAQSMTARPMKGMLTGPVTILN WSFVRNDQPRFETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYL KWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSV FREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKY AEVKPALKNMVAAAKLLRTQLASAK" CDS join(35194898..35195247,35195344..35195431, 35196010..35196137,35196226..35196617,35196725..35196888, 35197049..35197129,35197247..35197413,35197501..35197606, 35197708..35197958,35198054..35198255,35198362..35198730) /locus_tag="TCM_025862" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30072.m000966; paralog of Thecc1EG041152t1" /codon_start=1 /product="Cobalamin-independent synthase family protein isoform 1" /protein_id="EOY10526.1" /db_xref="TAIR:AT5G17920.2" /db_xref="UniProtKB/TrEMBL:UniRef50_O50008" /translation="MASHIVGYPRMGPKRELKFALESFWDKKSSAEDLQKVAADLRSS IWKQMADAGIKYIPSNTFSYYDQVLDTTSMLGAVPPRYSWNGGEIGFDTYFSMARGNA SVPAMEMTKWFDTNYHFIVPELGPDVNFSYASHKAVDEYKEAKALGVDTVPVLIGPVS YLLLSKPAKGVEKTFSLLSLLPKIIPVYKEVISELKAAGASWIQFDEPTLVLDLDSYK LEAFTAAYADLESTLSGLNVLVETYFADLTAEAFKTLCGLKGVTAYGVDLVRGTQTIG LIKSDFPKGKYLFAGVVDGRNIWANDLASSVNTLQELEAVVGKDKLVVSSSCSLLHTA VDLVNETKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEAFFSANAAALASRKSSPR VTNEAVQKAAAALKSSDHRRATNVSARLDAQQKKLNLPVLPTTTIGSFPQTLELRRVR REFKAKKISEDVYVKAIKEEIKKVVDLQEELDIDVLVHGEPERNDMVEYFGEQLSGFA FTVNGWVQSYGSRCVKPPIIYGDVSRPNPMTVFWSSTAQSMTARPMKGMLTGPVTILN WSFVRNDQPRFETCYQIALAIKDEVEDLEKAGINVIQIDEAALREGLPLRKSEHAFYL KWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSV FREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKY AEVKPALKNMVAAAKLLRTQLASAK" gene complement(35199317..35202231) /locus_tag="TCM_025864" /note="dbxref CacaoGD:Thecc1EG025864" mRNA complement(join(35199317..35199988,35200198..35200563, 35202141..35202231)) /locus_tag="TCM_025864" /product="3-oxo-5-alpha-steroid 4-dehydrogenase family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma02g08970.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044447t1" /inference="similar to AA sequence:Phytozome:Glyma02g08970.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1163t1" CDS complement(join(35199518..35199988,35200198..35200518)) /locus_tag="TCM_025864" /note="paralog of Thecc1EG044447t1" /codon_start=1 /product="3-oxo-5-alpha-steroid 4-dehydrogenase family protein, putative" /protein_id="EOY10527.1" /db_xref="Phytozome:Glyma02g08970.1" /db_xref="TAIR:AT5G16010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LFS3" /translation="MSLLMKFLFPPSLFVTATSLISFTPLVISGLSEKRGKHLQYSKF FGVGSQTSAESKIKLSSRAAMVTLYTPAFLAGVFSFGMFPDEGLRFLLLKSAITIHFF KRILESLFVHKYSGEMAIDSMVAILLSYFISSALMIFSQHLTVGLPEPAIDMMYPGIL WFSIGISGNFYHHYLLSKLRGNGAKEYKIPKGGLFDFVTCPHYLFEVLVFWGFAFISQ TLNSFSFALGTTFYLMGRSYATRRWYLSKFEDFPEKVKAMIPFVF" mobile_element 35200646..35201121 /note="source:CACAO_Mariner_E220_scaffold_9 8433 8918" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(35200967..35201150) /note="source:CACAO_MITE22_scaffold_2 9 194" /mobile_element_type="transposon:TIR/MITE" mobile_element 35202110..35202156 /note="source:CACAO_hAT_E962_scaffold_2 4750 4795" /mobile_element_type="transposon:TIR/hAT" gene 35202626..35208480 /locus_tag="TCM_025865" /note="dbxref CacaoGD:Thecc1EG025865" mRNA join(35202626..35203045,35204467..35204604, 35205698..35205933,35206076..35206295,35207033..35207215, 35207814..35208480) /locus_tag="TCM_025865" /product="Double-stranded-RNA-binding protein 4, putative" /inference="alignment:exonerate- protein:2:ricco:30072.m000969" /inference="similar to AA sequence:frave:gene17743" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaL_g09446t00001" CDS join(35202817..35203045,35204467..35204604, 35205698..35205933,35206076..35206295,35207033..35207215, 35207814..35208154) /locus_tag="TCM_025865" /note="dbxref frave:gene17743" /codon_start=1 /product="Double-stranded-RNA-binding protein 4, putative" /protein_id="EOY10528.1" /db_xref="TAIR:AT3G62800.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9P7M8" /translation="MYKSKLQELCQKKAWDLPEYDTTKQGQDHNPRFEAAVVVNGMSF QSQNPVKSAKEAQNDAARVAFLHFTSPPLPNPGSSNVTANFDSNIENRRTVQPGRQET NRLSQVNETGSVCKDNHRVKDIQHLYKNQLQVFARKRNVDLPVYSCECEGPPHASRFR CKVTFNEQTYESLEFFPTIKEAEHAAAKIALSSLSPDAFQEEDFSFYKNLLQELTQKE GCPLPVYTTTRSGEAHASTFVSIVEVKGNVFTGQEAKTKKHAEVLAAKVAYMKLKERK SNRGSMVINPAYQERQVPVLSLSHSRSNVNADTQQNFGPKACTLFNPSSTTREDQHED IVYGTFRNHLLSIPFPQPEMTTDWQSSSSTSSLYDPLLPEDDLSMSNLPSNHSATTNS VTNSITMEPVAMSTVPCNKVIVHPRVPNLNFPAGSTLLPMSDENWVAFKLESQPNQ" gene complement(35207187..35216041) /locus_tag="TCM_025866" /note="dbxref CacaoGD:Thecc1EG025866" mRNA complement(join(35207187..35207216,35208430..35209156, 35209266..35209763,35210064..35210165,35210249..35210376, 35210681..35210763,35211300..35211385,35211695..35211794, 35212315..35212397,35213049..35213116,35213204..35214047, 35214342..35214424,35214553..35214590,35214945..35215297)) /locus_tag="TCM_025866" /product="MIF4G domain and MA3 domain-containing protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g29170.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s05810.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc715t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9474t3" mRNA complement(join(35207187..35207216,35208430..35209160, 35209266..35209763,35210064..35210165,35210249..35210376, 35210681..35210763,35211300..35211385,35211695..35211794, 35212315..35212397,35213049..35213116,35213204..35214047, 35214342..35214424,35214553..35214590,35214945..35215297)) /locus_tag="TCM_025866" /product="MIF4G domain and MA3 domain-containing protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g29170.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s05810.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc715t7; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9474t3" mRNA complement(join(35207187..35207216,35208430..35209763, 35210064..35210165,35210249..35210376,35210681..35210763, 35211300..35211385,35211695..35211794,35212315..35212397, 35213049..35213116,35213204..35214047,35214342..35214424, 35214553..35214590,35214945..35215297)) /locus_tag="TCM_025866" /product="MIF4G domain and MA3 domain-containing protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g29170.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s05810.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc715t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9474t3" mRNA complement(join(35208427..35209156,35209266..35209388, 35209470..35209763,35210064..35210165,35210249..35210376, 35210681..35210763,35211300..35211385,35211695..35211794, 35212315..35212397,35213049..35213116,35213204..35214047, 35214342..35214424,35214553..35214590,35214945..35215297)) /locus_tag="TCM_025866" /product="MIF4G domain and MA3 domain-containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g29170.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s05810.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc720t7; alternateUTRof:Thecc1EG025866t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9474t3" mRNA complement(join(35208427..35209388,35209470..35209763, 35210064..35210165,35210249..35210376,35210681..35210763, 35211300..35211385,35211695..35211794,35212315..35212397, 35213049..35213116,35213204..35214047,35214342..35214424, 35214553..35214590,35214945..35215297)) /locus_tag="TCM_025866" /product="MIF4G domain and MA3 domain-containing protein isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g29170.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s05810.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc720t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9474t3" mRNA complement(join(35208517..35209156,35209266..35209388, 35209470..35209763,35210064..35210165,35210249..35210376, 35210681..35210763,35211300..35211385,35211695..35211794, 35212315..35212397,35213049..35213116,35213204..35214047, 35214342..35214424,35214553..35214590,35214945..35215428, 35215620..35216041)) /locus_tag="TCM_025866" /product="MIF4G domain and MA3 domain-containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g29170.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s05810.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9474t3" CDS complement(join(35208773..35209156,35209266..35209388, 35209470..35209763,35210064..35210165,35210249..35210376, 35210681..35210763,35211300..35211385,35211695..35211794, 35212315..35212397,35213049..35213116,35213204..35214047, 35214342..35214424,35214553..35214556)) /locus_tag="TCM_025866" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="MIF4G domain and MA3 domain-containing protein isoform 1" /protein_id="EOY10529.1" /db_xref="Phytozome:POPTR_0013s05810.1" /db_xref="TAIR:AT5G17930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q67Z79" /translation="MESKSRREKRKEARLAHNKQKHDSWLQNQKSQRMERQLRDVKSK KGNKIKNSQTRFLKENEIVQQASEHSTIPSKAESKLKLEEDHDFNESKMVKGKKSLKR TSKTKFEEYLEMETPNAAMLAQKDLELERKLAKKLKVKDGKLRGDDDDLNMLFEDVPS ALESWDEEVPDTERFSDERTVNPTSSKKHKKKKSADQAFEDDIADDSTIAASELEDNA EMAFEDILAKAPARKRRRKRKFLQQGQEGNMAGETALGVSLPTESHSKEVALNEASPK APAMEGNVKYVAPRLRSHARNESEEQTQIRRRVRGLLNRLSESNVESITGEMAAIFRS ISRSVSSQIISEEVLASCYNGPRGNEQHAAVFASFVAGMACLVGMDFSAKLIASLAKT FEEEYLKEDNLSLRNLTLLLSYLCIFGVCSSDLIYDFLIMLSKRLTEIDVSTILTILQ CCGMKIRGDDPATMKNFILSVQNRVSELKASSGDGQGKINGRRMEFMLETICDIKNNK KRPKEDTVQHTRIKKWLQKLKVEDILIRGLKWSKLLDPEKKGQWWLSGDMVSATNDVE EVASRIDKEALEAQKMLELAAAQRMNTDGRRAIFCIIMSGEDYIDAFEKLLRLDLPGK QDRDIMRVLVECCLQEKVFNKYYTVLAAKLCEHDKNHKFTLQFCLWDHFKELDSMPLI RSMHLAKFIAEMVASFTLSLAVLKTVEWSDPQMLSSKRVMHFRMLFEAIFEYPDKLIW NMFTRIAVTPELEPLRQGMEFFIKEYVVKTNKKVNNKFKVAKKALNNTEGVLM" CDS complement(join(35208773..35209156,35209266..35209388, 35209470..35209763,35210064..35210165,35210249..35210376, 35210681..35210763,35211300..35211385,35211695..35211794, 35212315..35212397,35213049..35213116,35213204..35214047, 35214342..35214424,35214553..35214556)) /locus_tag="TCM_025866" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="MIF4G domain and MA3 domain-containing protein isoform 1" /protein_id="EOY10531.1" /db_xref="Phytozome:POPTR_0013s05810.1" /db_xref="TAIR:AT5G17930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q67Z79" /translation="MESKSRREKRKEARLAHNKQKHDSWLQNQKSQRMERQLRDVKSK KGNKIKNSQTRFLKENEIVQQASEHSTIPSKAESKLKLEEDHDFNESKMVKGKKSLKR TSKTKFEEYLEMETPNAAMLAQKDLELERKLAKKLKVKDGKLRGDDDDLNMLFEDVPS ALESWDEEVPDTERFSDERTVNPTSSKKHKKKKSADQAFEDDIADDSTIAASELEDNA EMAFEDILAKAPARKRRRKRKFLQQGQEGNMAGETALGVSLPTESHSKEVALNEASPK APAMEGNVKYVAPRLRSHARNESEEQTQIRRRVRGLLNRLSESNVESITGEMAAIFRS ISRSVSSQIISEEVLASCYNGPRGNEQHAAVFASFVAGMACLVGMDFSAKLIASLAKT FEEEYLKEDNLSLRNLTLLLSYLCIFGVCSSDLIYDFLIMLSKRLTEIDVSTILTILQ CCGMKIRGDDPATMKNFILSVQNRVSELKASSGDGQGKINGRRMEFMLETICDIKNNK KRPKEDTVQHTRIKKWLQKLKVEDILIRGLKWSKLLDPEKKGQWWLSGDMVSATNDVE EVASRIDKEALEAQKMLELAAAQRMNTDGRRAIFCIIMSGEDYIDAFEKLLRLDLPGK QDRDIMRVLVECCLQEKVFNKYYTVLAAKLCEHDKNHKFTLQFCLWDHFKELDSMPLI RSMHLAKFIAEMVASFTLSLAVLKTVEWSDPQMLSSKRVMHFRMLFEAIFEYPDKLIW NMFTRIAVTPELEPLRQGMEFFIKEYVVKTNKKVNNKFKVAKKALNNTEGVLM" CDS complement(join(35208773..35209156,35209266..35209763, 35210064..35210165,35210249..35210376,35210681..35210763, 35211300..35211385,35211695..35211794,35212315..35212397, 35213049..35213116,35213204..35214047,35214342..35214424, 35214553..35214556)) /locus_tag="TCM_025866" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="MIF4G domain and MA3 domain-containing protein isoform 2" /protein_id="EOY10530.1" /db_xref="Phytozome:POPTR_0013s05810.1" /db_xref="TAIR:AT5G17930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q67Z79" /translation="MESKSRREKRKEARLAHNKQKHDSWLQNQKSQRMERQLRDVKSK KGNKIKNSQTRFLKENEIVQQASEHSTIPSKAESKLKLEEDHDFNESKMVKGKKSLKR TSKTKFEEYLEMETPNAAMLAQKDLELERKLAKKLKVKDGKLRGDDDDLNMLFEDVPS ALESWDEEVPDTERFSDERTVNPTSSKKHKKKKSADQAFEDDIADDSTIAASELEDNA EMAFEDILAKAPARKRRRKRKFLQQGQEGNMAGETALGVSLPTESHSKEVALNEASPK APAMEGNVKYVAPRLRSHARNESEEQTQIRRRVRGLLNRLSESNVESITGEMAAIFRS ISRSVSSQIISEEVLASCYNGPRGNEQHAAVFASFVAGMACLVGMDFSAKLIASLAKT FEEEYLKEDNLSLRNLTLLLSYLCIFGVCSSDLIYDFLIMLSKRLTEIDVSTILTILQ CCGMKIRGDDPATMKNFILSVQNRVSELKASSGDGQGKINGRRMEFMLETICDIKNNK KRPKEDTVQHTRIKKWLQKLKVEDILIRGLKWSKLLDPEKKGQWWLSGDMVSATNDVE EVASRIDKEALEAQKMLELAAAQRMNTDGRRAIFCIIMSGEDYIDAFEKLLRLDLPGK QVSSLFFLRKRDAFFFHSSIVNLNIHLQDRDIMRVLVECCLQEKVFNKYYTVLAAKLC EHDKNHKFTLQFCLWDHFKELDSMPLIRSMHLAKFIAEMVASFTLSLAVLKTVEWSDP QMLSSKRVMHFRMLFEAIFEYPDKLIWNMFTRIAVTPELEPLRQGMEFFIKEYVVKTN KKVNNKFKVAKKALNNTEGVLM" CDS complement(join(35209029..35209160,35209266..35209763, 35210064..35210165,35210249..35210376,35210681..35210763, 35211300..35211385,35211695..35211794,35212315..35212397, 35213049..35213116,35213204..35214047,35214342..35214424, 35214553..35214556)) /locus_tag="TCM_025866" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="MIF4G domain and MA3 domain-containing protein isoform 4" /protein_id="EOY10532.1" /db_xref="Phytozome:POPTR_0013s05810.1" /db_xref="TAIR:AT5G17930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q67Z79" /translation="MESKSRREKRKEARLAHNKQKHDSWLQNQKSQRMERQLRDVKSK KGNKIKNSQTRFLKENEIVQQASEHSTIPSKAESKLKLEEDHDFNESKMVKGKKSLKR TSKTKFEEYLEMETPNAAMLAQKDLELERKLAKKLKVKDGKLRGDDDDLNMLFEDVPS ALESWDEEVPDTERFSDERTVNPTSSKKHKKKKSADQAFEDDIADDSTIAASELEDNA EMAFEDILAKAPARKRRRKRKFLQQGQEGNMAGETALGVSLPTESHSKEVALNEASPK APAMEGNVKYVAPRLRSHARNESEEQTQIRRRVRGLLNRLSESNVESITGEMAAIFRS ISRSVSSQIISEEVLASCYNGPRGNEQHAAVFASFVAGMACLVGMDFSAKLIASLAKT FEEEYLKEDNLSLRNLTLLLSYLCIFGVCSSDLIYDFLIMLSKRLTEIDVSTILTILQ CCGMKIRGDDPATMKNFILSVQNRVSELKASSGDGQGKINGRRMEFMLETICDIKNNK KRPKEDTVQHTRIKKWLQKLKVEDILIRGLKWSKLLDPEKKGQWWLSGDMVSATNDVE EVASRIDKEALEAQKMLELAAAQRMNTDGRRAIFCIIMSGEDYIDAFEKLLRLDLPGK QVSSLFFLRKRDAFFFHSSIVNLNIHLQDRDIMRVLVECCLQEKVFNKYYTVLAAKLC EHDKNHKFTLQTVLSLGPFQRAGFNATYKINAPSKIHSRNGCLIYSLPCSPKNC" CDS complement(join(35209233..35209388,35209470..35209763, 35210064..35210165,35210249..35210376,35210681..35210763, 35211300..35211385,35211695..35211794,35212315..35212397, 35213049..35213116,35213204..35214047,35214342..35214424, 35214553..35214556)) /locus_tag="TCM_025866" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="MIF4G domain and MA3 domain-containing protein isoform 6" /protein_id="EOY10534.1" /db_xref="Phytozome:POPTR_0013s05810.1" /db_xref="TAIR:AT5G17930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q67Z79" /translation="MESKSRREKRKEARLAHNKQKHDSWLQNQKSQRMERQLRDVKSK KGNKIKNSQTRFLKENEIVQQASEHSTIPSKAESKLKLEEDHDFNESKMVKGKKSLKR TSKTKFEEYLEMETPNAAMLAQKDLELERKLAKKLKVKDGKLRGDDDDLNMLFEDVPS ALESWDEEVPDTERFSDERTVNPTSSKKHKKKKSADQAFEDDIADDSTIAASELEDNA EMAFEDILAKAPARKRRRKRKFLQQGQEGNMAGETALGVSLPTESHSKEVALNEASPK APAMEGNVKYVAPRLRSHARNESEEQTQIRRRVRGLLNRLSESNVESITGEMAAIFRS ISRSVSSQIISEEVLASCYNGPRGNEQHAAVFASFVAGMACLVGMDFSAKLIASLAKT FEEEYLKEDNLSLRNLTLLLSYLCIFGVCSSDLIYDFLIMLSKRLTEIDVSTILTILQ CCGMKIRGDDPATMKNFILSVQNRVSELKASSGDGQGKINGRRMEFMLETICDIKNNK KRPKEDTVQHTRIKKWLQKLKVEDILIRGLKWSKLLDPEKKGQWWLSGDMVSATNDVE EVASRIDKEALEAQKMLELAAAQRMNTDGRRAIFCIIMSGEDYIDAFEKLLRLDLPGK QDRDIMRVLVECCLQEKVFNKYYTVLAAKLCEHDKNHKFTLQVFSFPIFFFT" CDS complement(join(35209233..35209763,35210064..35210165, 35210249..35210376,35210681..35210763,35211300..35211385, 35211695..35211794,35212315..35212397,35213049..35213116, 35213204..35214047,35214342..35214424,35214553..35214556)) /locus_tag="TCM_025866" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="MIF4G domain and MA3 domain-containing protein isoform 5" /protein_id="EOY10533.1" /db_xref="Phytozome:POPTR_0013s05810.1" /db_xref="TAIR:AT5G17930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q67Z79" /translation="MESKSRREKRKEARLAHNKQKHDSWLQNQKSQRMERQLRDVKSK KGNKIKNSQTRFLKENEIVQQASEHSTIPSKAESKLKLEEDHDFNESKMVKGKKSLKR TSKTKFEEYLEMETPNAAMLAQKDLELERKLAKKLKVKDGKLRGDDDDLNMLFEDVPS ALESWDEEVPDTERFSDERTVNPTSSKKHKKKKSADQAFEDDIADDSTIAASELEDNA EMAFEDILAKAPARKRRRKRKFLQQGQEGNMAGETALGVSLPTESHSKEVALNEASPK APAMEGNVKYVAPRLRSHARNESEEQTQIRRRVRGLLNRLSESNVESITGEMAAIFRS ISRSVSSQIISEEVLASCYNGPRGNEQHAAVFASFVAGMACLVGMDFSAKLIASLAKT FEEEYLKEDNLSLRNLTLLLSYLCIFGVCSSDLIYDFLIMLSKRLTEIDVSTILTILQ CCGMKIRGDDPATMKNFILSVQNRVSELKASSGDGQGKINGRRMEFMLETICDIKNNK KRPKEDTVQHTRIKKWLQKLKVEDILIRGLKWSKLLDPEKKGQWWLSGDMVSATNDVE EVASRIDKEALEAQKMLELAAAQRMNTDGRRAIFCIIMSGEDYIDAFEKLLRLDLPGK QVSSLFFLRKRDAFFFHSSIVNLNIHLQDRDIMRVLVECCLQEKVFNKYYTVLAAKLC EHDKNHKFTLQVFSFPIFFFT" gene 35216386..35223833 /locus_tag="TCM_025867" /note="dbxref CacaoGD:Thecc1EG025867" mRNA join(35216386..35219467,35219921..35220415, 35220592..35221116,35221525..35222361,35223206..35223255, 35223518..35223833) /locus_tag="TCM_025867" /product="NB-ARC domain-containing disease resistance protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29838.m001666.3" /inference="similar to AA sequence:Phytozome:POPTR_0185s00200.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9411t2" mRNA join(35216612..35219467,35219921..35220415, 35220592..35221116,35221525..35222361,35223203..35223255, 35223518..35223828) /locus_tag="TCM_025867" /product="NB-ARC domain-containing disease resistance protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:29838.m001666.3" /inference="similar to AA sequence:Phytozome:POPTR_0185s00200.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9411t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9411t2" CDS join(35216681..35219467,35219921..35220415, 35220592..35221116,35221525..35222361,35223203..35223223) /locus_tag="TCM_025867" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="NB-ARC domain-containing disease resistance protein, putative isoform 2" /protein_id="EOY10536.1" /db_xref="Phytozome:POPTR_0185s00200.1" /db_xref="TAIR:AT4G27220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9REY6" /translation="MEICISVAAKTSEYAVVPIKNQIGYIFKHEGKVESLRIGVGKLK DARERVRHSVEEAKRRGEEIEQDVETWLTRVNKKLSDRDQDEDADKAKNKCLIGLCPN LKTRYQLSKRAEKESEAIVELLNEAEKFNSVSVSYRPAPQEIMSTYVKGFEDFESRRH VFDGVMEALKDSSVNIVGVYGMGGVGKTTLARHVAGQAKEKNLFDTVVMAFVTQNAEI AEIQQQIGDRLGLEFDAKTISVRADQLRERLKKENKVLVILDDLWARLDLEAVGIPCG GEHVGCKILLTSRDLNVLSMMDSRNNFPVGVLEEKEAWNLFNKMAGDSVNESPDLYST AIEVAKKCAGLPIAIVTVARALRNKGLFQWRDALQQLRTPSPRNFTGIPAPIYSAIEL SYSHLESQELKSTFLLCSLLCADTPISDLVKYGVGLGLFQGVNTIEEARDRAYSLVHQ LKSSCLLIDSFFEDVFSVHEVVRDVALSIAFREQHGFSLRNEVAPKEWPPMDMLNNCI FMSLSHNHFIELPKELECPQLQFFYICNVFPTLKIRDNFFTGMRKLEVLDLTGVCFSS LPSSVSLLANVRTLCLDRSSFENIAIVGELKTIEILSLRECSIKQLPREIGQLSRLRM LDLGNNPRLKLIPSGVFSSLSGLEELCLERSFTEWDIEGNASLVELKHLSRLTSLDVH IRNVQIVPMKLFSGKLKRYKILIGDMWYWSSERKTSRTLKLKLNSSFHLDHEIKTLLK KTEDLYLDEVKDIKNVLYELDAEGFPQLKYLHVQNSPTMEHIINSVEWVPCKAFPILE SLSLQNMINLEKICHGEIVAESFSRLKIIKVARCDRLNNFFSLSTARKIFQLQEIEVT DCENITEIVAEEREVNIEDNEALFCQLRSLTLVYLSNFLHFCSREEKLLTSEHGRSQS TIDTRSKERTLFNEKDVFPNLEKLYLYSINVEKIWHMCCFPANCSTVQNLTTFIVTGC GNLKCLFSSSMVQSLVQLKIVEIANCEMMEEVVVAEEEKVSKMMFPKLERLSLNNLPK LTRFCSESLIEFSSLSELFLGSCPCLKMFVSGFLGAGTTIKKEVRKNKSKENICTDIL ILFDEKVALPMLRNLTIYRMASLEKIWHDQLYLDSFCKLNDFYLGFCEKLLNVFPFSM LERLRRLKTLNIFKCDSLEEIFESQGLRAHESCAAKATQSTELEAITKLAFPQARSLQ LTKLPKLKSFYPRLHSTEWPLLERMEVVECDKVEIFALEYPSLKEIQGKTQFEFPLQQ PLFWVNKVTFPSLEELTLVRKEMMKEIWQGQVPAEYFRKLKVLVLRGFPKQSATLLSR FFRSLKSLEKLDVRDASFDKIFQCEGLAGEEKHAWTFQCLTELKLFNLPELMHLWEEG FQPGPIIQKLRILEVVECDELKNLAPSSASFQNLMTLEVSKCHGFINLVTHSTAKSLM QLTRMSITDCKMVENIVACVGEEMKDGIVFTQLKYLELNCLPNLECFCLESCDLVFPS LEQLIVMQCPNMKIFSKGELSTPKLQKVQVTEDEAEGHTEGSHNTTIQQLFKEQQNFK AY" CDS join(35216681..35219467,35219921..35220415, 35220592..35221116,35221525..35222361,35223206..35223223) /locus_tag="TCM_025867" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="NB-ARC domain-containing disease resistance protein, putative isoform 1" /protein_id="EOY10535.1" /db_xref="Phytozome:POPTR_0185s00200.1" /db_xref="TAIR:AT4G27220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9REY6" /translation="MEICISVAAKTSEYAVVPIKNQIGYIFKHEGKVESLRIGVGKLK DARERVRHSVEEAKRRGEEIEQDVETWLTRVNKKLSDRDQDEDADKAKNKCLIGLCPN LKTRYQLSKRAEKESEAIVELLNEAEKFNSVSVSYRPAPQEIMSTYVKGFEDFESRRH VFDGVMEALKDSSVNIVGVYGMGGVGKTTLARHVAGQAKEKNLFDTVVMAFVTQNAEI AEIQQQIGDRLGLEFDAKTISVRADQLRERLKKENKVLVILDDLWARLDLEAVGIPCG GEHVGCKILLTSRDLNVLSMMDSRNNFPVGVLEEKEAWNLFNKMAGDSVNESPDLYST AIEVAKKCAGLPIAIVTVARALRNKGLFQWRDALQQLRTPSPRNFTGIPAPIYSAIEL SYSHLESQELKSTFLLCSLLCADTPISDLVKYGVGLGLFQGVNTIEEARDRAYSLVHQ LKSSCLLIDSFFEDVFSVHEVVRDVALSIAFREQHGFSLRNEVAPKEWPPMDMLNNCI FMSLSHNHFIELPKELECPQLQFFYICNVFPTLKIRDNFFTGMRKLEVLDLTGVCFSS LPSSVSLLANVRTLCLDRSSFENIAIVGELKTIEILSLRECSIKQLPREIGQLSRLRM LDLGNNPRLKLIPSGVFSSLSGLEELCLERSFTEWDIEGNASLVELKHLSRLTSLDVH IRNVQIVPMKLFSGKLKRYKILIGDMWYWSSERKTSRTLKLKLNSSFHLDHEIKTLLK KTEDLYLDEVKDIKNVLYELDAEGFPQLKYLHVQNSPTMEHIINSVEWVPCKAFPILE SLSLQNMINLEKICHGEIVAESFSRLKIIKVARCDRLNNFFSLSTARKIFQLQEIEVT DCENITEIVAEEREVNIEDNEALFCQLRSLTLVYLSNFLHFCSREEKLLTSEHGRSQS TIDTRSKERTLFNEKDVFPNLEKLYLYSINVEKIWHMCCFPANCSTVQNLTTFIVTGC GNLKCLFSSSMVQSLVQLKIVEIANCEMMEEVVVAEEEKVSKMMFPKLERLSLNNLPK LTRFCSESLIEFSSLSELFLGSCPCLKMFVSGFLGAGTTIKKEVRKNKSKENICTDIL ILFDEKVALPMLRNLTIYRMASLEKIWHDQLYLDSFCKLNDFYLGFCEKLLNVFPFSM LERLRRLKTLNIFKCDSLEEIFESQGLRAHESCAAKATQSTELEAITKLAFPQARSLQ LTKLPKLKSFYPRLHSTEWPLLERMEVVECDKVEIFALEYPSLKEIQGKTQFEFPLQQ PLFWVNKVTFPSLEELTLVRKEMMKEIWQGQVPAEYFRKLKVLVLRGFPKQSATLLSR FFRSLKSLEKLDVRDASFDKIFQCEGLAGEEKHAWTFQCLTELKLFNLPELMHLWEEG FQPGPIIQKLRILEVVECDELKNLAPSSASFQNLMTLEVSKCHGFINLVTHSTAKSLM QLTRMSITDCKMVENIVACVGEEMKDGIVFTQLKYLELNCLPNLECFCLESCDLVFPS LEQLIVMQCPNMKIFSKGELSTPKLQKVQVTEDEAEGHTEGSHNTTIQQLFKEQNFKA Y" mobile_element 35219826..35219875 /note="source:CACAO_M_E52765_F10_scaffold_8 3862 3913" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 35223748..35223823 /note="source:scaffold_3_CACTA_0396 890 966" /mobile_element_type="transposon:TIR/CACTA" gene 35225136..35225752 /locus_tag="TCM_025868" /note="dbxref CacaoGD:Thecc1EG025868" mRNA join(35225136..35225266,35225358..35225752) /locus_tag="TCM_025868" /product="Methyltransferase, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400034863" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025877t2" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400034863" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc3017t1" CDS join(35225174..35225266,35225358..35225672) /locus_tag="TCM_025868" /note="paralog of Thecc1EG025877t2" /codon_start=1 /product="Methyltransferase, putative" /protein_id="EOY10537.1" /db_xref="Phytozome:PGSC0003DMP400034863" /db_xref="TAIR:AT1G51990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_E3UTU2" /translation="MDSLPDQQKMSQNELDFLLALRIATAPTLPLWILHDWGDEQCLK LLKNCFEALPENGKVVIVESLTPEFPMTDIVTKITFELDVSVLHMLPGAKERTKQEFE ALAREAGFKTLNVVCRIYSYWVMELCKNVNIAN" mobile_element complement(35225680..35225731) /note="source:CACAO_M_E34420_F305_scaffold_5 1477 1527" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 35229266..35260557 /locus_tag="TCM_025869" /note="dbxref CacaoGD:Thecc1EG025869" mRNA join(35229266..35229395,35234164..35234663, 35234989..35235302,35235485..35235549,35235694..35235969, 35238549..35239041) /locus_tag="TCM_025869" /product="Caffeic acid 3-O-methyltransferase 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400034865" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025871t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400001124" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9415t4" mobile_element 35229791..35232779 /note="source:CACAO_on_E172_scaffold_5 1 2989" /mobile_element_type="transposon:TIR/PIF-Harbinger" CDS join(35234245..35234663,35234989..35235302, 35235485..35235549,35235694..35235969,35238549..35238806) /locus_tag="TCM_025869" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG025871t1" /codon_start=1 /product="Caffeic acid 3-O-methyltransferase 1 isoform 1" /protein_id="EOY10538.1" /db_xref="Phytozome:PGSC0003DMP400001124" /db_xref="TAIR:AT5G54160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q00763" /translation="MSSKLDNQNITANEEEEAFHQAMQLAMSTTLPMVLKAAIDLDLL EIIAKAGPAGCKLSPIEIASHLPTKNPDASSIIDRILRVLASHSILTCDLATNEDGHV QRLYGLAPVAKYFLHNDDGISLIPTLTTSTDKYLLGAWYHLREATLEGGATPLVKAYG MDLFELAAKNDEISGKFNNTMGNQTAIIMKKVLEIYKGFEGINQLVDVGGGLGINLKL IVSKYPQIKGINFDLPHVVKDAPHFLGVDHVGGDMFIEVPQGEVIFMKWILHDWGDDR CLKLLKNCYNALPKFGKVVVVELVVPESPMTDIVTKNTLTLDAGLFIVVPGAKERTKE EYEALAKKAGFSTFRLVCRAYSYWWILHDWDDDRCLKLLKNCYNALPKFGKVVVVELI VPESPVTDVVTKNTLTLDICLFNVIPGAKERTKEEYEALARKAGFSTFKLV" mRNA join(35234276..35234663,35234989..35235302, 35235485..35235549,35235733..35235941,35260425..35260557) /locus_tag="TCM_025869" /product="Caffeic acid 3-O-methyltransferase 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400034865" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025871t1" /inference="similar to AA sequence:ricco:29672.m000224" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9415t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9415t4; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14725t1" CDS join(35234311..35234663,35234989..35235302, 35235485..35235549,35235733..35235941,35260425..35260512) /locus_tag="TCM_025869" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29672.m000224; paralog of Thecc1EG025871t1" /codon_start=1 /product="Caffeic acid 3-O-methyltransferase 1 isoform 2" /protein_id="EOY10539.1" /db_xref="TAIR:AT5G54160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q00763" /translation="MQLAMSTTLPMVLKAAIDLDLLEIIAKAGPAGCKLSPIEIASHL PTKNPDASSIIDRILRVLASHSILTCDLATNEDGHVQRLYGLAPVAKYFLHNDDGISL IPTLTTSTDKYLLGAWYHLREATLEGGATPLVKAYGMDLFELAAKNDEISGKFNNTMG NQTAIIMKKVLEIYKGFEGINQLVDVGGGLGINLKLIVSKYPQIKGINFDLPHVVKDA PHFLGVDHVGGDMFIEVPQGEVIFMKLLKNCYNALPKFGKVVVVELVVPESPMTDIVT KNTLTLDAGLFIVVPGAKERTKEEYEALAKKAGFSTFRLVYRCPWCKREDKGRVRGIG KKSWILNF" gene 35241765..35242972 /locus_tag="TCM_025870" /note="dbxref CacaoGD:Thecc1EG025870" mRNA join(35241765..35242360,35242543..35242972) /locus_tag="TCM_025870" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29635.m000451.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032303t1" /inference="similar to AA sequence:ricco:29823.m000212" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.12 coverage" gene 35241766..35260822 /locus_tag="TCM_025871" /note="dbxref CacaoGD:Thecc1EG025871" mRNA join(35241766..35241841,35258735..35259234, 35259560..35259873,35260056..35260120,35260265..35260822) /locus_tag="TCM_025871" /product="Caffeic acid 3-O-methyltransferase 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400034865.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025869t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400001124" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.63 coverage" CDS join(35241979..35242360,35242543..35242877) /locus_tag="TCM_025870" /note="dbxref ricco:29823.m000212; paralog of Thecc1EG032303t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10540.1" /translation="MEDPRSPDFLHHTDHHGSVVINLKLTSSNYCSWSRSFLLALSIR NKTGFIDGSTKQPSLIDGLYSSWTHCNNLNVAWLLESISEPIATNVFYMSSVPEIWQT LKNRFSQLDDTRICNLQFSLCNKTQALRSHIIMIKPFLSVDEAYNLVLREESQGSISM QNQALLETTTMAIVIESKRRPKNDVTCSHCDKNGHVKDKCFRIIGFPPDFKFTKGKGN NIRKAMSTLTNSANKPQIEH" mobile_element 35245104..35247949 /note="source:CACAO_M_E44204_F15_scaffold_5 1 2822" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 35251461..35252941 /note="source:CACAO_on_E172_scaffold_5 455 2653" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(35253670..35253851) /note="source:INTACT39F_F22_scaffold_1-int 6629 6809" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(35254164..35254717) /note="source:INTACT39F_F22_scaffold_1-int 5489 6039" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 35254772..35254903 /note="source:CACAO_M_E1841_F5_scaffold_1 15392 15524" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 35257007..35257353 /note="source:CACAO_on_E172_scaffold_5 2644 2989" /mobile_element_type="transposon:TIR/PIF-Harbinger" CDS join(35258816..35259234,35259560..35259873, 35260056..35260120,35260265..35260573) /locus_tag="TCM_025871" /note="paralog of Thecc1EG025869t1" /codon_start=1 /product="Caffeic acid 3-O-methyltransferase 1" /protein_id="EOY10541.1" /db_xref="Phytozome:PGSC0003DMP400001124" /db_xref="TAIR:AT5G54160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q00763" /translation="MSSKLDNQNITANEEEEAFHQAMQLAMSTILPMVLKAAIDLDLL EIIAKAGPAGCKLSPIEIASHLPTKNPDASSIIDRILRVLASHSILTCDLATNEDGHV QRLYGLAPIAKYFLHNDDGISLIPTLTISTDKYLLGAWYHLREATLEGGAIPLVKAYG MDLFELAAKNDEISGKFNNTMGNQTAIIMKKVLEIYKGFEGINQLVDVGGGLGINLKL IVSKYPQIKGINFDLPHVVKDAPHFLGVDHVGGDMFIEVPQGEVIFMKWILHDWGDDR CLKLLKNCYNALPKFGKVVVVELVVPESPMTDIVTKNTLTLDAGLFIVVPGAKERTKE EYEALAKKAGFSTFRLVCRAYSYWVMEFHKNVIV" gene complement(35261643..35265761) /locus_tag="TCM_025873" /note="dbxref CacaoGD:Thecc1EG025873" mRNA complement(join(35261643..35262823,35262902..35263012, 35263558..35263615,35264335..35264444,35265372..35265761)) /locus_tag="TCM_025873" /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01010555001.2" /note="quality class is medium, express is weak, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.16 coverage" CDS complement(join(35261807..35262823,35262902..35263012, 35263558..35263615,35264335..35264444,35265372..35265659)) /locus_tag="TCM_025873" /codon_start=1 /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /protein_id="EOY10542.1" /db_xref="TAIR:AT4G23160.1" /translation="MTNALLAKNKFGFMDETLICPSSDSPDAVAWIKSNSMVISWIFN SLHPSLHDNVAYLDTAREMWIDLEECFPQGNAPRVHQLKMDIVNTQHKDLSVDLATRK LIGMGELKDGFYYFQEITILVASATSTCDTGLEINFMSMLPLATLLVILMAIKDIRWQ AAMQHELETNQTWTLQKLPPAKKAIGCKRVEELDCTETFAPVAKLTTVRTLLAAAAAK HWVLHQFDVHNAFIHGDLNEEVYMKRPSGYLSTSDDRVCWLRKSLYGLKRASRQCFAK FSTAILRFGFTQYKADTSLFLHHKGTSFTAILVYVNDVIIATSDISHTKALKQYLTAW FPIKDLGNHKYFLGLEVGRCRGGIAWSQRKYTLDILREAGMLASKPVHFPIEQNHKLA LDDSDLLDDPSFYSRLIGRLIYLTITRPDICYSVHILSQFMHQPRQGHWQAALRILRY LKLAPSKGLFLSTGSDLVKHNEIDCHFIRDCIQRGLIVSRYIASHNQSTDLFTKALGK QQFQFLVRKLGIRNLHAPT" mobile_element complement(35269347..35270473) /note="source:INTACT39F_F22_scaffold_1-int 6299 7434" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(35270616..35272446) /note="source:INTACT39F_F22_scaffold_1-int 4509 6280" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 35272396..35276992 /locus_tag="TCM_025877" /note="dbxref CacaoGD:Thecc1EG025877" mRNA join(35272396..35272582,35275046..35275683, 35275868..35276178,35276320..35276384,35276514..35276992) /locus_tag="TCM_025877" /product="Caffeic acid 3-O-methyltransferase 1 isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT1G51990.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025871t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s00550.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9418t2" mobile_element complement(35272542..35273366) /note="source:INTACT39F_F22_scaffold_1-int 3549 4334" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA join(35275164..35275683,35275868..35276178, 35276317..35276384,35276514..35276988) /locus_tag="TCM_025877" /product="Caffeic acid 3-O-methyltransferase 1 isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT1G51990.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025871t1" /inference="similar to AA sequence:Phytozome:POPTR_0015s00550.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9418t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9418t2" CDS join(35275169..35275683,35275868..35276178, 35276317..35276384,35276514..35276813) /locus_tag="TCM_025877" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG025871t1" /codon_start=1 /product="Caffeic acid 3-O-methyltransferase 1 isoform 2" /protein_id="EOY10544.1" /db_xref="Phytozome:POPTR_0015s00550.2" /db_xref="TAIR:AT5G54160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q00763" /translation="MENCALSFETYIAKPFYKHLCKSRYLQIEEINIMSTSLPDQQQF ISKEEEDCLQAIQFATSTVLPFALKTAIDLDLLEIIAKAGPGCTLSPAEIVSNLPAKN PDAPAIIDRILRVLTAHSILACHLVTDKDGHTKRTYGLASIGRYFLQNEDGISVTPFL NMTLDKRLIDSWNFFKEATLEGGLSIVKGFGMNLFEMAAKDNNFFNTFNQAMSNHTNI VMKKILEIYKGFEGVSQVVDVGGGLGTNLKLIVSKYPQIKGINFDLPLVVKDAPNFPA GVEHVGGDMFTQVPHGEVIFMKWVLHDWGDDQCLKLLKNCYDAISESGKVIILESILP ELPMTDLVTTTTLNLDLGLVHLLPGAKERTKKEFETLARDAGFPTLKLVCRAYNYWVI ELSKL" CDS join(35275169..35275683,35275868..35276178, 35276320..35276384,35276514..35276813) /locus_tag="TCM_025877" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG025871t1" /codon_start=1 /product="Caffeic acid 3-O-methyltransferase 1 isoform 1" /protein_id="EOY10543.1" /db_xref="Phytozome:POPTR_0015s00550.2" /db_xref="TAIR:AT5G54160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q00763" /translation="MENCALSFETYIAKPFYKHLCKSRYLQIEEINIMSTSLPDQQQF ISKEEEDCLQAIQFATSTVLPFALKTAIDLDLLEIIAKAGPGCTLSPAEIVSNLPAKN PDAPAIIDRILRVLTAHSILACHLVTDKDGHTKRTYGLASIGRYFLQNEDGISVTPFL NMTLDKRLIDSWNFFKEATLEGGLSIVKGFGMNLFEMAAKDNNFFNTFNQAMSNHTNI VMKKILEIYKGFEGVSQVVDVGGGLGTNLKLIVSKYPQIKGINFDLPLVVKDAPNFPG VEHVGGDMFTQVPHGEVIFMKWVLHDWGDDQCLKLLKNCYDAISESGKVIILESILPE LPMTDLVTTTTLNLDLGLVHLLPGAKERTKKEFETLARDAGFPTLKLVCRAYNYWVIE LSKL" gene 35278982..35284155 /locus_tag="TCM_025878" /note="dbxref CacaoGD:Thecc1EG025878" mRNA join(35278982..35279214,35282224..35282520, 35282664..35282715,35283813..35284155) /locus_tag="TCM_025878" /product="Caffeic acid O-methyltransferase, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025877t1" /inference="similar to AA sequence:ricco:29672.m000224" /note="quality class is medium-utrpoor, express is weak, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.29 coverage" CDS join(35282355..35282520,35282664..35282715, 35283813..35283867) /locus_tag="TCM_025878" /note="dbxref ricco:29672.m000224; paralog of Thecc1EG025877t1" /codon_start=1 /product="Caffeic acid O-methyltransferase, putative" /protein_id="EOY10545.1" /translation="MKKVLEIYKGFDGVSQVVDVGGGLGTNLKLIVSKYPQIKANFHL PLVVKDAPNFPSVEHIGGDMFAKIPHEKVVWQSDIIGIYSARTAHD" mobile_element 35284773..35286007 /note="source:scaffold_5_CACTA_0614 1441 2645" /mobile_element_type="transposon:TIR/CACTA" gene 35286516..35289492 /locus_tag="TCM_025880" /note="dbxref CacaoGD:Thecc1EG025880" mRNA join(35286516..35286774,35286906..35287222, 35287700..35287835,35289020..35289492) /locus_tag="TCM_025880" /product="Early nodulin 55-2-like protein" /inference="alignment:exonerate- protein:2:ricco:30072.m000972" /inference="similar to AA sequence:frave:gene06201" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS join(35286609..35286774,35286906..35287222, 35287700..35287835,35289020..35289228) /locus_tag="TCM_025880" /note="dbxref frave:gene06201" /codon_start=1 /product="Early nodulin 55-2-like protein" /protein_id="EOY10546.1" /db_xref="TAIR:AT2G32300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SI95" /translation="MAVHRSFVIFALVAAIAPAITLAEEFIVGGDEGWKLGVDYQQWA KDKQFVIGDTLVFKYKVGAHNVYKVNGTDFQNCNVPTNNTLGFFSGNDSIMLPAAGNK WYICGITGHCAKGMKLKITVLSSVSAPAPAPSSAATLCDKEAIFQVLLGITFSIVAML MLGGWVMVIPFCHGGWNVKGDALLCLRFGFWHWEAPVDSFGLLEVGGIRNKGFDGKEK KRMTWKAKLGGYKNRQMHFWHHTFHGPVLQSMSMQQPTSKSGESRPQEETFFAPIAF" mobile_element 35288235..35288306 /note="source:scaffold_1_CACTA_0016 2583 2651" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(35288252..35288337) /note="source:scaffold_5_CACTA_0586 1624 1707" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(35288343..35288564) /note="source:scaffold_3_CACTA_0377 6025 6226" /mobile_element_type="transposon:TIR/CACTA" gene 35291249..35292492 /locus_tag="TCM_025881" /note="dbxref CacaoGD:Thecc1EG025881" mRNA join(35291249..35291488,35291911..35292492) /locus_tag="TCM_025881" /product="Uclacyanin 1, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma18g03850.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025883t1" /inference="similar to AA sequence:Phytozome:Glyma18g03850.1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS join(35291326..35291488,35291911..35292317) /locus_tag="TCM_025881" /note="paralog of Thecc1EG025883t1" /codon_start=1 /product="Uclacyanin 1, putative" /protein_id="EOY10547.1" /db_xref="Phytozome:Glyma18g03850.1" /db_xref="TAIR:AT2G32300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BEW9" /translation="MASNKFLMLTIVAIFLPAIAMATDYIVGDDSGWTINFDYQAWAK DKVFRIGDKLVFQYPQGYHNVFKVNGTAFKNCDIPPADEALNSGNDTIVLKTPGRKWY ICGVSDHCSAYSQKLAITVQYSYGPAPAPAPSSPWAPTPESWSPAAPSVPATPTQPWA PAPQPWSPTPSPPAPTAPWPPAPSPYPWI" mobile_element complement(35294035..35294048) /note="source:CACAO_PIF_E119_scaffold_3 4657 4680" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 35294049..35294161 /note="source:scaffold_5_CACTA_0580 5415 5527" /mobile_element_type="transposon:TIR/CACTA" mobile_element 35294062..35294604 /note="source:CACAO_PIF_E119_scaffold_3 1775 2273" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 35298503..35299824 /locus_tag="TCM_025883" /note="dbxref CacaoGD:Thecc1EG025883" mRNA join(35298503..35298739,35299148..35299824) /locus_tag="TCM_025883" /product="Uclacyanin 1, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s05800.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025881t1" /inference="similar to AA sequence:frave:gene32327" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS join(35298577..35298739,35299148..35299584) /locus_tag="TCM_025883" /note="dbxref frave:gene32327; paralog of Thecc1EG025881t1" /codon_start=1 /product="Uclacyanin 1, putative" /protein_id="EOY10548.1" /db_xref="TAIR:AT2G32300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BEW9" /translation="MASNMFLMLTIVAMFLPTIAMATDYIVGDDSGWTINFDYQAWAK DKVFQVGDKLVFQYPQGYHNVFKVNGTAFKNCDILPENEALTSGNDTIVLKTPGRKWY ICGVSNHCAAYGQKLAITVQYPYGWAPAPAPSSPTAPTPDPWAPTPEPWASTTPSVPA TTTEPWAPAPQPWTPVPSSPSTPAPSAPWPPAPSPYPWI" gene complement(35300047..35301095) /locus_tag="TCM_025884" /note="dbxref CacaoGD:Thecc1EG025884" mRNA complement(join(35300047..35300649,35300945..35301095)) /locus_tag="TCM_025884" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaL_g13485t00001" CDS complement(join(35300249..35300649,35300945..35301056)) /locus_tag="TCM_025884" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10549.1" /translation="MQCDKQQETPMLTEEYIEPHCQWTRGKELDRIEITLDGFRKEDV KVTLKHPVGEEEHSIISVTAKSPERLCKKFEIPNDYELGNLRAELCCGSLILELPKKA ASNKLEILKPKLEIRKALQESAEDMQKNFFSAVEYFYSKKKVGAFIFVMLASGVFAYK YYTERCGVEN" gene 35301557..35302978 /locus_tag="TCM_025885" /note="dbxref CacaoGD:Thecc1EG025885" mRNA join(35301557..35301871,35302502..35302978) /locus_tag="TCM_025885" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc2144t1" CDS join(35301751..35301871,35302502..35302860) /locus_tag="TCM_025885" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10550.1" /translation="MKNEGSVEPSYDEFEPYCKWKKEKKNCISKATDIVEIQLCGFKK EEVKVELEKDVLCISGERPVGRSLQRFLKKIDVSKYDTEDLGAEFEGGILRIRLPMKC SAICFRLGGDNETLGILFSWPQIKTTIWAVAAALLLLLLAFYMYKYSECTNFRNWFE" mobile_element complement(35302374..35302447) /note="source:scaffold_7_CACTA_0779 2934 3006" /mobile_element_type="transposon:TIR/CACTA" gene complement(35304162..35304944) /locus_tag="TCM_025886" /note="dbxref CacaoGD:Thecc1EG025886" mRNA complement(join(35304162..35304693,35304807..35304944)) /locus_tag="TCM_025886" /product="HSP20-like chaperones superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30072.m000975" /inference="similar to AA sequence:Phytozome:POPTR_0013s05170.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11876t00001" CDS complement(join(35304326..35304693,35304807..35304891)) /locus_tag="TCM_025886" /codon_start=1 /product="HSP20-like chaperones superfamily protein, putative" /protein_id="EOY10551.1" /db_xref="Phytozome:POPTR_0013s05170.1" /db_xref="TAIR:AT1G54400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5V4" /translation="METTYEDFEPLCNWQRAQNCDTLDVHLPGFKRQQLRVQLSSSGI ITITGERQLDEAKAIKSRFRKEFPVSKVCQPNQIRAKFCNGVLSLVMPKQVSIISGAS GNVTSGKFLRSTMNMNKRVVLEIIIAICWLLAVRAYVQKCCQCSHLGN" gene complement(35306270..35307357) /locus_tag="TCM_025887" /note="dbxref CacaoGD:Thecc1EG025887" mRNA complement(join(35306270..35307075,35307216..35307357)) /locus_tag="TCM_025887" /product="HSP20-like chaperones superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s05170.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s05170.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9432t1" CDS complement(join(35306552..35307075,35307216..35307300)) /locus_tag="TCM_025887" /codon_start=1 /product="HSP20-like chaperones superfamily protein, putative" /protein_id="EOY10552.1" /db_xref="Phytozome:POPTR_0013s05170.1" /translation="MVRSYQDFQPDCEYRQGETQDIIELKLKDFRKEQLKVTFGTNRT LTICGERPLEGTRWIRFRKEFTPPKDCNANEIRARLSSGILYVTIPKKIVQQVPQQDQ ARPVQQASAIQHEGKLEQESSRSTEAAETFTAKESGPGDVTTPTENATSHRAGPKSFI PRLKMGRKTVMKVAASVTVLSLLFIILLFMFKYYAPMVNIVN" mobile_element 35308426..35314087 /note="source:CACAO_M_S_E66639_F28_scaffold_5 1 5662" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(35314134..35316484) /locus_tag="TCM_025889" /note="dbxref CacaoGD:Thecc1EG025889" mRNA complement(join(35314134..35315162,35315474..35315563, 35315655..35315873,35315983..35316484)) /locus_tag="TCM_025889" /product="Annexin 8, putative" /inference="alignment:exonerate- protein:2:ricco:30072.m000977" /inference="similar to AA sequence:ricco:30072.m000977" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9443t1" CDS complement(join(35314938..35315162,35315474..35315563, 35315655..35315873,35315983..35316444)) /locus_tag="TCM_025889" /note="dbxref ricco:30072.m000977" /codon_start=1 /product="Annexin 8, putative" /protein_id="EOY10553.1" /db_xref="TAIR:AT5G12380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5V5" /translation="MATKILASSSHGFEIECKEIHDSWGRLNQLIRALASRTQLECRR IRETYKDMYGEDLITLLQKTSMTSQRNEPGVSPKTCAALSLWMLDPHERDATVAREAI QQDDTNFKAIVEIFLGRKSSHIALIKQAYQSKYKRQLDQDIVTIEPPHPHQKILVALA ASHKAHQADVSQHIAKCDARRLYETGEGSPGAIDEGTVLEIFTKRSIPQLKLTFSCYK HIYGHDYTKSITKGDSWEFEDALKMVIKCICNPPNYYAKTLFTSIKGMTADRGALARV MVSRAEMDMDEIQRVFKIKYGVELREAICDSIPSGDYRDFLLALATKTATTPSKA" gene 35318389..35322872 /locus_tag="TCM_025890" /note="dbxref CacaoGD:Thecc1EG025890" mRNA join(35318389..35318783,35319334..35319721, 35320612..35320918,35321106..35321222,35321328..35322872) /locus_tag="TCM_025890" /product="DCD (Development and Cell Death) domain-like protein" /inference="similar to AA sequence:Phytozome:POPTR_0015s15310.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9445t1" CDS join(35319714..35319721,35320612..35320918, 35321106..35321222,35321328..35322653) /locus_tag="TCM_025890" /codon_start=1 /product="DCD (Development and Cell Death) domain-like protein" /protein_id="EOY10554.1" /db_xref="Phytozome:POPTR_0015s15310.1" /db_xref="TAIR:AT2G35140.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HFR8" /translation="MSCLFAKIAMEFEGGLKKKISGKFPEFGAIFMSNASTRVECFER KLFGLPMSSADFVKGVKVGMILFLFEYEKRELHGVFKATSHGELNIIPHAYSSSGKKF PAQVRFTTIWHCHPLQENEFQDAIRNNYFATNRFNFGLSKDQVHRLLRLFDSRKIRVF QSQIFIGGETRKRYHKSSLKKRETEKDKSNHTKSARKKLKRDIDSVSHSNVEPLAYSG KLIVAKDESQLLDSGDSHIECEESDSMHCNCSYCPEGPYSQGSLAFVASHSSASGQEL CPHPDHAFQSVPVSVGEELKELETSGNCDIDLGDYIPLLPSDDSDSTDTRPSPESGCV MKDHVGLPFSASGLYENTCQPVPTASPITKVDDVRINENAYSLKSPMHYCQENSNSDF IYQYASVCGLYSDDSNNRSSVFSRLNFFSGVQDKEADTRVEKLVYKTRKQKTCSIEVD KSAQDFMEGLQQMHDKWKKTVIVSRSVERANDHTANKKTSVSMCLSRTSEPDVQDNDI STRLQGRHDKQRNMRETKSPVSGGKRTSVFLRLSRTSEPDVNNSGSATLLQERHDKQR KKQETECPVAGKFITYHIW" gene 35324243..35328368 /locus_tag="TCM_025891" /note="dbxref CacaoGD:Thecc1EG025891" mRNA join(35324243..35324547,35324670..35324773, 35325213..35325288,35326486..35326557,35326640..35326705, 35327170..35327334,35327434..35327513,35327742..35327865, 35327978..35328366) /locus_tag="TCM_025891" /product="RNA binding family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30072.m000978" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016568t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s05350.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00593t00004" mRNA join(35324470..35324547,35324670..35324773, 35325213..35325288,35326486..35326557,35326640..35326705, 35327170..35327513,35327742..35327865,35327978..35328368) /locus_tag="TCM_025891" /product="Nucleic acid binding protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30072.m000978" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016568t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s05350.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g12863t00001; inference alignment:Newbler:10:TSA:cgbaB_g00593t00004; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc393t10" CDS join(35324542..35324547,35324670..35324773, 35325213..35325288,35326486..35326557,35326640..35326705, 35327170..35327513,35327742..35327865,35327978..35327995) /locus_tag="TCM_025891" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG016568t1" /codon_start=1 /product="Nucleic acid binding protein, putative isoform 2" /protein_id="EOY10556.1" /db_xref="Phytozome:POPTR_0019s05350.1" /db_xref="TAIR:AT5G32450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SIA2" /translation="MQTRTVQVKNLSDLASEREIHEFFSFSGDIERIEIIGEPGQSKI AYVTFKDPKALEIALLLSGATIVDKIVVITCAENYLPKPEIHEARTADNTVSITPAEQ SAPDAAQGRTSPPGSGRMYVSKAQDVVASMLAKGSAIRQDAVNKAKAFDEKHRLTASA SAKVTSFDRRVGLTEKLTVGISVVNEKVKSVDQRLQVSDKTMAAIFAAERKINDTGSA VKSSRYVTAGTAWLNGAFSKVAKAGQVAGTKTREKFNMAMSNLTAKDPIAV" CDS join(35324542..35324547,35324670..35324773, 35325213..35325288,35326486..35326557,35326640..35326705, 35327170..35327334,35327434..35327513,35327742..35327865, 35327978..35327995) /locus_tag="TCM_025891" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG016568t1" /codon_start=1 /product="RNA binding family protein isoform 1" /protein_id="EOY10555.1" /db_xref="Phytozome:POPTR_0019s05350.1" /db_xref="TAIR:AT5G32450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SIA2" /translation="MQTRTVQVKNLSDLASEREIHEFFSFSGDIERIEIIGEPGQSKI AYVTFKDPKALEIALLLSGATIVDKIVVITCAENYLPKPEIHEARTADNTVSITPAEQ SAPDAAQGRTSPPGSGRMYVSKAQDVVASMLAKGSAIRQDAVNKAKAFDEKHRLTASA SAKVSDKTMAAIFAAERKINDTGSAVKSSRYVTAGTAWLNGAFSKVAKAGQVAGTKTR EKFNMAMSNLTAKDPIAV" mobile_element complement(35329149..35329272) /note="source:CACAO_on_S_E46_scaffold_2 548 654" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(35329173..35329316) /note="source:scaffold_1_CACTA_0016 1551 1678" /mobile_element_type="transposon:TIR/CACTA" mobile_element 35329503..35329627 /note="source:scaffold_8_CACTA_0858 14567 14687" /mobile_element_type="transposon:TIR/CACTA" gene 35331983..35341159 /locus_tag="TCM_025892" /note="dbxref CacaoGD:Thecc1EG025892" mRNA join(35331983..35332225,35332890..35333571, 35333756..35333933,35334036..35334264,35334566..35334705, 35334921..35335210,35335425..35335637,35335719..35336207, 35337127..35337795,35338730..35339260,35339497..35340271, 35340889..35341159) /locus_tag="TCM_025892" /product="Ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s05200.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s05200.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:PASA:2:TSA:puevd3b025041t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9482t3" mRNA join(35331983..35332225,35332890..35333571, 35333756..35333933,35334036..35334264,35334566..35334705, 35334921..35335210,35335425..35335637,35335719..35336207, 35337127..35337795,35338730..35339260,35339500..35340271, 35340889..35341159) /locus_tag="TCM_025892" /product="Ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s05200.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s05200.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9482t3" CDS join(35333302..35333571,35333756..35333933, 35334036..35334264,35334566..35334705,35334921..35335210, 35335425..35335637,35335719..35336207,35337127..35337795, 35338730..35339260,35339497..35339724) /locus_tag="TCM_025892" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein isoform 2" /protein_id="EOY10558.1" /db_xref="Phytozome:POPTR_0013s05200.1" /db_xref="TAIR:AT3G03790.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SIA3" /translation="MLTLSQGQKQNPQKSMRKILPSGSNKDLWLAVREGSLADVDSAL ALSKKNGGNINSRNSFGLTPLHIATWRNHIPIIRRLLEAGADPDARDGESGWSSLHRA LHFGHLAVASVLLQSGALITLEDSKCRTPVDLLSGPVLQVFGSGHDSVATEVFSWGSG VNYQLGTGNAHIQKLPCKLDSFHGSIIKLVSASKFHSVAVTARGKVYTWGFGRGGRLG HPDFDIHSGQAAVITPRQVTSGLGTRRVKAIAAAKHHTVIATEGGEVFTWGSNREGQL GYTSVDTQPTPRRVSSLRSRIVAVAAANKHTAVVSKSGEVFTWGCNREGQLGYGTSNS ASNYTPRIVEYLKGKVFIGVATAKYHTIVLGADGEVYTWGHRLVTPKRVVIARNLKKS GSTPMKFHRMERLHVVAIAAGMVHSMALTEDGALFYWVSSDPDLRCQQLYSLCEKKMV SISAGKYWAAAATATGDVYMWDGKKGKDKPPVATRLHGVKRATSVSVGETHLLTIGSL YHPVYPPNMPISDQAPKLNNDEVEEFDEEFMFNDSESSSMRSSVHKNVSEEKPVPSLK SLCEKVAAECLVEPRNAIQLLEIADSLGAEDLRKHCEDIVLRNLDYILTVSSQAFASA SPDVLANLEKLLDLRSSESWSYRRLPAPTATFPVIINSEEEDSEIEVVRTRDNYKNET RLENEGDRLDSFLQPKDDPNKGISKQVRALWKKLQQIDMLEVKQSGGCILDDQQIAKL QTRSALENSLAELGLPVEKSQSKGSSSVLPDGKGNRKAEVSRKQRRKSKQRVAQVETV SGFSASNIEPYSVKDFSDIEIPQVLTNKEENAMSEGTMADQASKESSFIVQKKDSSVP AKDKSSLQTATKKKNRKGGLSMFLSGALDDTPKQVLPPPPTPRSEGPAWGGAKVSKGS ASLREIQDEQSKTQLNQLTGSKNQVEGLSEGRSEGKILLSSFLPSKPIPMVSGQASQS SDVDRSTPPWAASGTPPHLSRPSLRDIQIQQQGKQQQSLSHSPKMRMAGFSVASGQGS PSDSPGMNRWFKPEAEAPSSIRSIQVEERAMKDLKRFYSSVKVVKNQS" CDS join(35333302..35333571,35333756..35333933, 35334036..35334264,35334566..35334705,35334921..35335210, 35335425..35335637,35335719..35336207,35337127..35337795, 35338730..35339260,35339500..35339724) /locus_tag="TCM_025892" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein isoform 1" /protein_id="EOY10557.1" /db_xref="Phytozome:POPTR_0013s05200.1" /db_xref="TAIR:AT3G03790.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SIA3" /translation="MLTLSQGQKQNPQKSMRKILPSGSNKDLWLAVREGSLADVDSAL ALSKKNGGNINSRNSFGLTPLHIATWRNHIPIIRRLLEAGADPDARDGESGWSSLHRA LHFGHLAVASVLLQSGALITLEDSKCRTPVDLLSGPVLQVFGSGHDSVATEVFSWGSG VNYQLGTGNAHIQKLPCKLDSFHGSIIKLVSASKFHSVAVTARGKVYTWGFGRGGRLG HPDFDIHSGQAAVITPRQVTSGLGTRRVKAIAAAKHHTVIATEGGEVFTWGSNREGQL GYTSVDTQPTPRRVSSLRSRIVAVAAANKHTAVVSKSGEVFTWGCNREGQLGYGTSNS ASNYTPRIVEYLKGKVFIGVATAKYHTIVLGADGEVYTWGHRLVTPKRVVIARNLKKS GSTPMKFHRMERLHVVAIAAGMVHSMALTEDGALFYWVSSDPDLRCQQLYSLCEKKMV SISAGKYWAAAATATGDVYMWDGKKGKDKPPVATRLHGVKRATSVSVGETHLLTIGSL YHPVYPPNMPISDQAPKLNNDEVEEFDEEFMFNDSESSSMRSSVHKNVSEEKPVPSLK SLCEKVAAECLVEPRNAIQLLEIADSLGAEDLRKHCEDIVLRNLDYILTVSSQAFASA SPDVLANLEKLLDLRSSESWSYRRLPAPTATFPVIINSEEEDSEIEVVRTRDNYKNET RLENEGDRLDSFLQPKDDPNKGISKQVRALWKKLQQIDMLEVKQSGGCILDDQQIAKL QTRSALENSLAELGLPVEKSQSKGSSSVLPDGKGNRKAEVSRKQRRKSKQRVAQVETV SGFSASNIEPYSVKDFSDIEIPQVLTNKEENAMSEGTMADQASKESSFIVQKKDSSVP AKDKSSLQTATKKKNRKGGLSMFLSGALDDTPKQVLPPPPTPRSEGPAWGGAKVSKGS ASLREIQDEQSKTQLNQLTGSKNQVEGLSEGRSEGKILLSSFLPSKPIPMVSGQASQS SDVDRSTPPWAASGTPPHLSRPSLRDIQIQQGKQQQSLSHSPKMRMAGFSVASGQGSP SDSPGMNRWFKPEAEAPSSIRSIQVEERAMKDLKRFYSSVKVVKNQS" gene 35347545..35350300 /locus_tag="TCM_025893" /note="dbxref CacaoGD:Thecc1EG025893" mRNA join(35347545..35347628,35347775..35347819, 35348315..35348887,35349342..35350300) /locus_tag="TCM_025893" /product="Galactose oxidase/kelch repeat superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0010s00710.1" /inference="similar to AA sequence:ricco:29889.m003421" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9476t1" CDS join(35347818..35347819,35348315..35348887, 35349342..35349915) /locus_tag="TCM_025893" /note="dbxref ricco:29889.m003421" /codon_start=1 /product="Galactose oxidase/kelch repeat superfamily protein" /protein_id="EOY10559.1" /db_xref="TAIR:AT1G16250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WW40" /translation="MEPVKEAILPGLPDDLALRCLAKLSHGYDGVLEAVSKRWRDLIR SSEYANYKANQGWLGDWLFVVTERSNQWVAYDRTADIWHPLPKIPTEYDGLQHFGMSS VCVGKRLLVIGGSYAPRDTAYPRQPPMITNDVLQFDPFKKQWARLTSMQTPRSHFACC VMSGKVYVAGGRNTAHPRGLALAEVYDPISDRWEELPPMLNPQMDCLGISYKGKFHVL SDQIGLAEQTPSEIFDPSNETWCTVDDIWPFSRAMQFAVQVMGNDQVYTVVDWGESLI KARDPVRGEWITVGAVPPVVLPDHFRELEAFGYGFAALRNELYVLGGKVLKWEEVGAG RFDVVKLAGVRVCDPSQRPLNWREIRPMCRPAGGSVLGCTSLEEENSS" gene 35351193..35355407 /locus_tag="TCM_025894" /note="dbxref CacaoGD:Thecc1EG025894" mRNA 35351193..35355407 /locus_tag="TCM_025894" /product="C2 calcium/lipid-binding plant phosphoribosyltransferase family protein" /inference="alignment:exonerate- protein:2:ricco:30072.m000980" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005933t1" /inference="similar to AA sequence:ricco:30072.m000980" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9480t1" CDS 35351475..35354612 /locus_tag="TCM_025894" /note="dbxref ricco:30072.m000980; paralog of Thecc1EG005933t1" /codon_start=1 /product="C2 calcium/lipid-binding plant phosphoribosyltransferase family protein" /protein_id="EOY10560.1" /db_xref="TAIR:AT5G17980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5V8" /translation="MATTTQKLVVEVIDARNLVPKDGHGASSPYVVIDYYGQRKRTST VTRDINPTWNEVLQFNVEKPSDVFNDMLELDVYHDKNHGPTNRKNSLGRIKLSSGQFV KKGEEALIYYPLEKKYLLSWVQGEIGLKIYYADEVGPPPPVAGQPVEETKAEEVKAEP PSSSAAAPVSSDQQPETAEVKPDDTPASSVEGNPAPALSEQPAEGEKAKEAVPAGEEN GAAEGEKPEEGGDQVDPEADSQSAQHDHHDDDIVLEPTSANWAPTPQPEIMASTISGS IPEIKVARTTSAPPPITRPATPTNFASSVDPPDHTPIERSSFDLVEKMHYVFVKVVKA GSLPTNGNPVVKIAISGCRVTSKPARKAMYFEWDQTFAFARDTPETSSFLEISVWADA GGANFLGGVCFDATEMPLRDPPDSPLAPQWYRLEGGGAHRGDLMLATWIGTQADEAFP DSWKSDTAGNLINSRAKIYQSPKLWYLRASVLEAQDILPLTALKEGSFQIKVQLGFQV QKTKVSVSRNGNPSWNEDLMFVAAEPFGDHLIFYLEYRQSKGPVTLGVVGISLTAIER RVDDRKVISRWFNLEDPKNEKKGYKGRVHLSLCFDGGYHVMDEAAHVCSDYRPTARQL WKPAVGTLELGIIGCKNLLPMKTINSKGFTDAYTVAKYGSKWVRTRTVSDSLDPKWNE QYTWKVYDPCTVLTIGVFDSWGALDIDGGKEATRPDSRMGKVRIRISTLEMGKVYKNT YPLVMLGNRGVQKMGELELAVRFVRAAPTLDFLHVYSQPLLPLMHHIKPLGMAQQEML RSTTVKLLAAHLSRSEPPLRSDVVRYMLDADSHTFSMRKVRANWSRIVNVLSGLIDIV RWIENTRAWKNPTATILVHALLVMLVWFPDLIVPTIAFYVFVIGVWNYRFRSRDKLPH FCPKISLADTVDRDELDEEFDTMPSTRSPEIIRVRYDKLRAVGARVQNILGDFATQGE RVQALVTWRDPRATGIFVGLCFVVAFMLYLVPPKMVAMAFGFYYFRHPLFRDRMPSPA MNFFRRLPALSDRIM" mobile_element 35355752..35356138 /note="source:MITE_PIF_Tourist_1 1 425" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(35356009..35356174) /note="source:scaffold_4_CACTA_0483 5555 5706" /mobile_element_type="transposon:TIR/CACTA" mobile_element 35356675..35357081 /note="source:INTACT246_F58_scaffold_7-int 1 421" /mobile_element_type="retrotransposon:LTR/Copia" gene 35359427..35368010 /locus_tag="TCM_025896" /note="dbxref CacaoGD:Thecc1EG025896" mRNA join(35359427..35359541,35360318..35360416, 35360508..35360753,35360871..35361075,35361274..35361364, 35361535..35361680,35362217..35362460,35362563..35362667, 35362746..35362928,35363011..35363215,35363388..35363750, 35364707..35364727,35364844..35365008,35365144..35365348, 35365554..35365644,35365886..35366031,35366293..35366536, 35366643..35366747,35366832..35367014,35367093..35367297, 35367393..35368010) /locus_tag="TCM_025896" /product="Glycosyl hydrolase family protein" /inference="alignment:exonerate- protein:2:ricco:29976.m000487.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041163t3" /inference="similar to AA sequence:Phytozome:POPTR_0019s05340.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9840t1" CDS join(35360392..35360416,35360508..35360753, 35360871..35361075,35361274..35361364,35361535..35361680, 35362217..35362460,35362563..35362667,35362746..35362928, 35363011..35363215,35363388..35363750,35364707..35364727, 35364844..35365008,35365144..35365348,35365554..35365644, 35365886..35366031,35366293..35366536,35366643..35366747, 35366832..35367014,35367093..35367297,35367393..35367877) /locus_tag="TCM_025896" /note="paralog of Thecc1EG041163t3" /codon_start=1 /product="Glycosyl hydrolase family protein" /protein_id="EOY10561.1" /db_xref="Phytozome:POPTR_0019s05340.1" /db_xref="TAIR:AT5G20950.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WNW0" /translation="MLLRIIVEGSRKKTRMTRPRLFIFLMGLLLCCCFEISAKAEYMK YKDPKQSLPVRVQDLLDRMTLEEKIGQMVQIDRKVASAEVMKKYFIGSLLSGGGSVPA PQASAKAWIDMVNEFQKGCLSTRLGIPMIYGIDAVHGHNNVYNATIFPHNIGLGATRD PELVKKIGASTALEVRATGIPYVFAPCIAVCRDPRWGRCYESYSEDPEVVEAMTEIVP GLQGDIPANSPKGVPFVAGQKNVAACAKHYVGDGGTTQGINENNTVIDRHGLVSIHMP GYYTSIIKGVSTIMVSYSSWNGIKMHANRDLITDFLKNTLRFRGFVITDWEGLDRITS PPHANYSYSIQVGIKAGIDMVMVPFNYTEFIDGLTFQVKNNIIPMSRIDDAVMRILRV KFVMGLFENPLADYSLVDQLGSQEHRELAREAVRRSLVLLKNGQSTDHPLLPLPKKTS KILVAGSHADNLGYQCGGWTIEWQGLSGNNLTSGTTILTAVKNTVDSSTKVVYKKNPD AEFVKSNDFSYAIVVVGEHPYAETQGDSMNLTIADPGPSTITNVCGAVKCVVIIISGR PVVIQPFLNSIDALVAAWLPGTEGQGVADVLFGDYGFTDKCYRNCSSEKAEHVKYKDP KQPLNVRIKDLIGRMTLEEKIGQMVQIERAVASAEVMKKYFIGSVLSGGGSVPAPKAS AKTWLNMVNEFQKGSLSTRLGIPMIYGIDAVHGHNNVYKATIFPHNIGLGATRDPALV KKIGAATALEVRATGIPYAFAPCLAVCRDPRWGRCYESYSEDHKIVQAMTEIIPGLQG DIPSNSRKGVPFVAGKKNVAACAKHYVGDGGTTRGINENNTVIDRHGLLSIHMPAYYN SIIKGVSTVMTSYSSWNGVKNHANHEMVTNFLKKTLRFRGFVISDWEGIDRITSPPHA NYTYSILASINAGLDMIMVPNNYKEFIDGLTYLVKNKFIPMSRIDDAVKRILRVKFVM GLFEDPLADDSLVDQLGSQEHRELAREAVRKSLVLLKNGDSADAPLLPLPKKAPKILV AGSHANNLGYQCGGWTIEWQGQGGNNITDGTTILTAIKKTVDPKTKVVYKEKPDAEFV KSNDFSYAIVVVGEHPYAETNGDSLNLTIPEPGPSTIGNVCGAVKCVVVVISGRPVVI QPYVRYIDAIVAAWLPGSEGQGVADVLFGDYGFTGKLSFTWFKTVDQLPMHVGDSHYD PLFPFGFGLTTKPTKA" gene complement(35368283..35372484) /locus_tag="TCM_025897" /note="dbxref CacaoGD:Thecc1EG025897" mRNA complement(join(35368283..35369703,35369770..35370722, 35372233..35372318)) /locus_tag="TCM_025897" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene10392" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14762t2" mRNA complement(join(35368543..35369640,35369722..35370722, 35372233..35372484)) /locus_tag="TCM_025897" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene10392" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9975t5; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14762t2" CDS complement(join(35368909..35369703,35369770..35370657)) /locus_tag="TCM_025897" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY10562.1" /translation="MQDKSESIVIGEEKVKKEELHFKVKTKDMEPNHEKGEKVEVELE LKTKSVEKEKPNHKEDKEDKHKDKDEEKLKKKDKELKEKERKTEDDDEKQKKREEGEE KPKKKDKEKEKKEKNHKDKEVVEEDEDEEIEEKKNEKKHKDKGVEVEEDEEKDEKKKK KDKEEKEKKKEKKHKDKEHEVGEDEETEDKKKKKKDEEYKEKKKEKKQDKEDEVEDDE EKEEKKEKKKNKEEKERKKEKKLKDEEEEGEKEEKKKKDKGGKEKKKEKKQKEKEEEV EEDEDEEKEEKKKEKKKEKKKKKEKKKDKEDEVEKDEEKEDKKKEKKKEKKKDKEDEV EEEKVEEKEEKKKDKKKDKEEKEKKKERKLKDEEGESADVEEKEEKKKKETKKDKDDK EKKKEKKHKDEDEEVGEKKKKKEKEEKKEKKKDKEEKETKHKDEEKSKKKETDEKEKK KHEDGANDMKCETDITSREIEIVDFEKESEGEGEEEKQKGKAKEGKEKEKEKDKKGEK RKLKGKDKSKDLSKLKQRLEKINSKIEALLEKKAEILSQIKEAEGKSGEVAA" CDS complement(join(35368909..35369640,35369722..35370657)) /locus_tag="TCM_025897" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY10563.1" /translation="MQDKSESIVIGEEKVKKEELHFKVKTKDMEPNHEKGEKVEVELE LKTKSVEKEKPNHKEDKEDKHKDKDEEKLKKKDKELKEKERKTEDDDEKQKKREEGEE KPKKKDKEKEKKEKNHKDKEVVEEDEDEEIEEKKNEKKHKDKGVEVEEDEEKDEKKKK KDKEEKEKKKEKKHKDKEHEVGEDEETEDKKKKKKDEEYKEKKKEKKQDKEDEVEDDE EKEEKKEKKKNKEEKERKKEKKLKDEEEEGEKEEKKKKDKGGKEKKKEKKQKEKEEEV EEDEDEEKEEKKKEKKKEKKVKEDKVEEDENGEKEEKKKEKKKEKKKDKEDEVEEEKV EEKEEKKKDKKKDKEEKEKKKERKLKDEEGESADVEEKEEKKKKETKKDKDDKEKKKE KKHKDEDEEVGEKKKKKEKEEKKEKKKDKEEKETKHKDEEKSKKKETDEKEKKKHEDG ANDMKCETDITSREIEIVDFEKESEGEGEEEKQKGKAKEGKEKEKEKDKKGEKRKLKG KDKSKDLSKLKQRLEKINSKIEALLEKKAEILSQIKEAEGKSGEVAA" mobile_element 35373725..35373973 /note="source:CACAO_PIF_E54_scaffold_3 8899 9131" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 35374087..35374177 /note="source:CACAO_on_E1_scaffold_1 47 136" /mobile_element_type="transposon:TIR/hAT" mobile_element 35374390..35374902 /note="source:CACAO_on_E69_scaffold_9 194 492" /mobile_element_type="transposon:TIR/hAT" mobile_element 35375063..35375244 /note="source:CACAO_on_E69_scaffold_9 817 1010" /mobile_element_type="transposon:TIR/hAT" gene 35376775..35381718 /locus_tag="TCM_025899" /note="dbxref CacaoGD:Thecc1EG025899" mRNA join(35376775..35376935,35377621..35377725, 35377906..35377962,35378338..35378386,35378608..35378696, 35378774..35378847,35379624..35379666,35379765..35379825, 35379911..35379939,35380018..35380095,35380432..35380512, 35380942..35381007,35381120..35381285,35381380..35381508) /locus_tag="TCM_025899" /product="Syntaxin of plants 131 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s05240.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011324t1" /inference="similar to AA sequence:ricco:30072.m000983" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9591t1; inference alignment:Newbler:10:TSA:cgbaP2_g08571t00001; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc474t7" mRNA join(35376793..35376935,35377621..35377725, 35377906..35377962,35378338..35378386,35378608..35378696, 35378774..35378847,35379624..35379666,35379765..35379825, 35379914..35379939,35380018..35380095,35380432..35380512, 35380942..35381007,35381120..35381285,35381380..35381718) /locus_tag="TCM_025899" /product="Syntaxin of plants 131 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s05240.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011324t1" /inference="similar to AA sequence:ricco:30072.m000983" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g08571t00001" CDS join(35376918..35376935,35377621..35377725, 35377906..35377962,35378338..35378386,35378608..35378696, 35378774..35378847,35379624..35379666,35379765..35379825, 35379911..35379939,35380018..35380095,35380432..35380512, 35380942..35381007,35381120..35381285,35381380..35381462) /locus_tag="TCM_025899" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30072.m000983; paralog of Thecc1EG011324t1" /codon_start=1 /product="Syntaxin of plants 131 isoform 2" /protein_id="EOY10565.1" /db_xref="TAIR:AT3G03800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SRV7" /translation="MNDLLTESFEIPRGQGSRGGDIELGAQMNSGELGLQNFFKKVQD IDKQYEKLDKLLKKLQDAHEESKAVTKAPAMKSIKQRMEKDVDEVGKISRFIKAKIEE LDKENLANRQKPGCGKGTGVDRSRTATTLAIKKKLKDKMAEFQTLRETIHQEYREVVE RRVFTAVTGARPDEETIEKLIDTGDSEQIFQKAIQEQGRGRIMDTVSEIQERHEAVRD LERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSR KWMCIAIIILLLIVVIIVVAVIKPWSSNKGLCYKTPISRVCVCWLNTVMIENLKFF" CDS join(35376918..35376935,35377621..35377725, 35377906..35377962,35378338..35378386,35378608..35378696, 35378774..35378847,35379624..35379666,35379765..35379825, 35379914..35379939,35380018..35380095,35380432..35380512, 35380942..35381007,35381120..35381285,35381380..35381462) /locus_tag="TCM_025899" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30072.m000983; paralog of Thecc1EG011324t1" /codon_start=1 /product="Syntaxin of plants 131 isoform 1" /protein_id="EOY10564.1" /db_xref="TAIR:AT3G03800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SRV7" /translation="MNDLLTESFEIPRGQGSRGGDIELGAQMNSGELGLQNFFKKVQD IDKQYEKLDKLLKKLQDAHEESKAVTKAPAMKSIKQRMEKDVDEVGKISRFIKAKIEE LDKENLANRQKPGCGKGTGVDRSRTATTLAIKKKLKDKMAEFQTLRETIHQEYREVVE RRVFTVTGARPDEETIEKLIDTGDSEQIFQKAIQEQGRGRIMDTVSEIQERHEAVRDL ERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRK WMCIAIIILLLIVVIIVVAVIKPWSSNKGLCYKTPISRVCVCWLNTVMIENLKFF" gene complement(35382446..35389602) /locus_tag="TCM_025900" /note="dbxref CacaoGD:Thecc1EG025900" mRNA complement(join(35382446..35382757,35382921..35383446, 35383930..35384483,35385337..35385465,35385704..35385794, 35385995..35386107,35387104..35387347,35387429..35387517, 35387598..35387668,35388726..35388810,35388911..35389131, 35389236..35389564)) /locus_tag="TCM_025900" /product="O-fucosyltransferase family protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT3G03810.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019016t1" /inference="similar to AA sequence:TAIR:AT3G03810.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc614t2" mRNA complement(join(35382536..35383446,35383930..35384483, 35385337..35385465,35385704..35385794,35385995..35386107, 35387104..35387347,35387429..35387517,35387598..35387668, 35388726..35388810,35388911..35389136,35389222..35389602)) /locus_tag="TCM_025900" /product="O-fucosyltransferase family protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT3G03810.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019016t1" /inference="similar to AA sequence:TAIR:AT3G03810.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc530t8; alternateUTRof:Thecc1EG025900t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc614t2" CDS complement(join(35383020..35383446,35383930..35384483, 35385337..35385465,35385704..35385794,35385995..35386107, 35387104..35387347,35387429..35387517,35387598..35387668, 35388726..35388810,35388911..35389075)) /locus_tag="TCM_025900" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG019016t1" /codon_start=1 /product="O-fucosyltransferase family protein isoform 1" /protein_id="EOY10566.1" /db_xref="TAIR:AT3G03810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4J2C8" /translation="MVFKSKIKWVALFVLTLSLGSLVAHLSMTKFSSMNLVQYSAKDA LSHDFPNIGSPVGRNKRLWGSVRSLESLQPYANPRNSYPVPNDNNNGFIYAKIFGGFE KIRSSICDLVTISRLLNATLVIPEIQESTRSKGISYKFKSFSYLYDEEQFIASLKNDV IIVKSLPEYLKAARRKNEFPTFKPKNSASPSFYVKEILPSLKKAKVVGLIITDGGCLQ SILPPSMSEFQRLRCRVAFHALQFRPEIQILGRQMVERLQAWGQPFLAYHPGLVRDTL AYHGCAELFQDVHTELIQYRRDQMIKQGIINEELSVDSHLRRENGSCPLMPEEVGLLL RAMGYPSKTIIYLAGSETFGGQRLLIPLRAMFANLVDLTSLCSKTELLELIGPEAPLP PDTFQIPHPKSEEQLKEEWNKAGPRPRPLPPPPDRPIYQHEKEGWYGWITESDKEPGP SPMDLRMKAHRLLWDALDYIVSVEADAFFPGFNNDGSGWPDFSGLVIGQRLYERASSR SYRPDRKIIAALFKSTRDDMYHPKRNWTLSAKEHLNRSLSEDGLIRQSLLAKPTSFLS HPLPECSCRISSVEITKQTKDKDGGFLYGGEEECPKWMQSAGAEGVKYDDTESAEDDN DVVEQLESDGADVTSSLTSQIDNDEEWDPDD" CDS complement(join(35383020..35383446,35383930..35384483, 35385337..35385465,35385704..35385794,35385995..35386107, 35387104..35387347,35387429..35387517,35387598..35387668, 35388726..35388810,35388911..35389075)) /locus_tag="TCM_025900" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG019016t1" /codon_start=1 /product="O-fucosyltransferase family protein isoform 1" /protein_id="EOY10567.1" /db_xref="TAIR:AT3G03810.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4J2C8" /translation="MVFKSKIKWVALFVLTLSLGSLVAHLSMTKFSSMNLVQYSAKDA LSHDFPNIGSPVGRNKRLWGSVRSLESLQPYANPRNSYPVPNDNNNGFIYAKIFGGFE KIRSSICDLVTISRLLNATLVIPEIQESTRSKGISYKFKSFSYLYDEEQFIASLKNDV IIVKSLPEYLKAARRKNEFPTFKPKNSASPSFYVKEILPSLKKAKVVGLIITDGGCLQ SILPPSMSEFQRLRCRVAFHALQFRPEIQILGRQMVERLQAWGQPFLAYHPGLVRDTL AYHGCAELFQDVHTELIQYRRDQMIKQGIINEELSVDSHLRRENGSCPLMPEEVGLLL RAMGYPSKTIIYLAGSETFGGQRLLIPLRAMFANLVDLTSLCSKTELLELIGPEAPLP PDTFQIPHPKSEEQLKEEWNKAGPRPRPLPPPPDRPIYQHEKEGWYGWITESDKEPGP SPMDLRMKAHRLLWDALDYIVSVEADAFFPGFNNDGSGWPDFSGLVIGQRLYERASSR SYRPDRKIIAALFKSTRDDMYHPKRNWTLSAKEHLNRSLSEDGLIRQSLLAKPTSFLS HPLPECSCRISSVEITKQTKDKDGGFLYGGEEECPKWMQSAGAEGVKYDDTESAEDDN DVVEQLESDGADVTSSLTSQIDNDEEWDPDD" gene complement(35390678..35394201) /locus_tag="TCM_025901" /note="dbxref CacaoGD:Thecc1EG025901" mRNA complement(join(35390678..35391317,35391400..35391967, 35392056..35392511,35393959..35394201)) /locus_tag="TCM_025901" /product="Exostosin family protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400019732" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025904t1" /inference="similar to AA sequence:Phytozome:GSVIVT01022479001" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9490t1" CDS complement(join(35390813..35391317,35391400..35391967, 35392056..35392404)) /locus_tag="TCM_025901" /note="paralog of Thecc1EG025904t1" /codon_start=1 /product="Exostosin family protein" /protein_id="EOY10568.1" /db_xref="Phytozome:GSVIVT01022479001" /db_xref="TAIR:AT4G38040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPR6" /translation="MGKSSSFLYQVSQHRFPATFKGFFYFLPISLALTTLLLIFIYIS TTGDVTNNHAQTTLYLETLPGTASVSSLVDQTIPTIPFENNDNDDLFADPSRMARLAR ANQWFLGNLFGLTNGNYTNNQEVYHDGDLFLEDYKQMNKSLKIYVYPHSKDDPFANVL LPPDSDSKGNYASELMFKKALMKSHFITKDPNEADLFYMPFSISPMRTDPRIDVHGIP DFVKSYISNITRKYPYWNRTGGADHFYVACHSIGKIAFDKAFVARLNVIQLVCSSTYF PSSYLPHKDASMPQVWPRQGDPPNLLTSERKRLAFFAGAVNSPVRIALLKVWANDTEI FAHFGRLRTPYSEQLLGSKFCIHVKGYEVNTARVADALFYGCVPVILANHYDLPFTDI LNWKSFAVVVHHIDIPVLKKILQGISNEEYSMLQSNAVKVRKHFQWNVPPLDFDAFHM SLYELWKRRSVVRVRLTPSMEFM" gene 35392893..35393763 /locus_tag="TCM_025902" /note="dbxref CacaoGD:Thecc1EG025902" mRNA 35392893..35393763 /locus_tag="TCM_025902" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS 35393116..35393361 /locus_tag="TCM_025902" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10569.1" /translation="MFTKEEKRKEGTANLVCLEPNPNGKCMATESVLATSIKSLSSIK HVRWPFPTSHPGPASPVPLQFNSFSCHYYLWKQLMQT" gene complement(35393945..35396708) /locus_tag="TCM_025903" /note="dbxref CacaoGD:Thecc1EG025903" mRNA complement(join(35393945..35395018,35395114..35395681, 35396291..35396708)) /locus_tag="TCM_025903" /product="Exostosin family protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400019732.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025904t1" /inference="similar to AA sequence:Phytozome:GSVIVT01022479001" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05358t00001" CDS complement(join(35394514..35395018,35395114..35395681, 35396291..35396654)) /locus_tag="TCM_025903" /note="paralog of Thecc1EG025904t1" /codon_start=1 /product="Exostosin family protein" /protein_id="EOY10570.1" /db_xref="Phytozome:GSVIVT01022479001" /db_xref="TAIR:AT4G38040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPR6" /translation="MGKSSVVIYNVSKQQYTPTFKIFFFLLPISLAFTSFLLIFIYIY STSRVFTNPQASPYLEPATNSSIFEQLFSFSTDNEETIPFSIDNTAEDLFFDLPRTAS YAKQNQWSIGLGDLFGLFSGYNMSNTEIYHDTDIFLEDYKEMNKSFKIFVYPHKPDDP FANVLLPVDFDPKGHYASELYFKKALVNSHFITKDPNEADFFYMPFSIADMRHDPRIG PEGLQDFIKDYISNISHKYPYWNRTGGADHFHVACHSIGRIAMDKAVEAKENSIQVVC SSTYFAAGYFPHKDVSMPQIWPKEQDPKKLVSSKRNQLAFFAGQVNSPVRAALLKHWR NDTEVYAHFGRLETDDGEQQLRSKFCLHVKGFEVNTARVTDALHYGCVPVILANHYDL PFADILNWKSFSVVVHYMDIPVLKKILQGISLEEYSWLQSNVLKVRKHFKWNVPPVDY DAFYMAMYELWLRRSSVRVRLSASREYI" mobile_element complement(35396199..35396278) /note="source:CACAO_M_E12463_F12_scaffold_3 4536 4602" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(35396891..35402724) /locus_tag="TCM_025904" /note="dbxref CacaoGD:Thecc1EG025904" mRNA complement(join(35396891..35396999,35397590..35397811, 35400487..35401380,35401493..35402060,35402374..35402724)) /locus_tag="TCM_025904" /product="Exostosin family protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400037260" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025903t1" /inference="similar to AA sequence:Phytozome:GSVIVT01022479001" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14733t1" mobile_element complement(35398378..35398889) /note="source:INTACT5_F105_scaffold_4-int 1431 1955" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(35399489..35400836) /note="source:INTACT5_F105_scaffold_4-int 5 1416" /mobile_element_type="retrotransposon:LTR/Unclassified" CDS complement(join(35400876..35401380,35401493..35402060, 35402374..35402698)) /locus_tag="TCM_025904" /note="paralog of Thecc1EG025903t1" /codon_start=1 /product="Exostosin family protein" /protein_id="EOY10571.1" /db_xref="Phytozome:GSVIVT01022479001" /db_xref="TAIR:AT4G38040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPR6" /translation="MAKSSSLCYHISQHRFSTSFGGSFFFLPLSLAISTFLVIFLYIW CTNSNLFTDPQNNHYQESSPKSSLLQQMIPFSLEKAAEDMFYSSRSAPLSKGNQWSMA NPFGLYGNYVNNTELYHDEDFFLQDYKEMNRSLKVFVYPHSRDDPFASVLLPVDYDPK GHYASELYFKKVLSKSHFITKNPSEADLFFLPFSIVEMRHDPRIGPEGMQDFIKDYIF NISHKYPYWNRTDGADHFYVACHSIGRFAMDKVFSAKFNVIQVVCSSSYFVAGYIPHK DASMPQIWPRQRDPPNSASSKRKQLAFFAGTINSPARLALIQAWGNDTDIFAHFERLR TPDADQLLGSKFCLHVKGFEVNTARVADAIYYGCVPVILANHYDLPFGDIINWKSFSV VVHYMDIPVLKNILQRISLEEYSLLQSNTLKVRKHFQWNDPPTDYDAFYTTMYELWLR RSSVRVRLSASMEFM" gene complement(35402031..35405964) /locus_tag="TCM_025906" /note="dbxref CacaoGD:Thecc1EG025906" mRNA complement(join(35402031..35402060,35403368..35403862, 35404213..35404780,35405518..35405931)) /locus_tag="TCM_025906" /product="Exostosin family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30072.m000985" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025904t1" /inference="similar to AA sequence:Phytozome:GSVIVT01022479001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc520t3_C2; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc520t3_C2" CDS complement(join(35402045..35402060,35403368..35403862, 35404213..35404780,35405518..35405929)) /locus_tag="TCM_025906" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG025904t1" /codon_start=1 /product="Exostosin family protein isoform 2" /protein_id="EOY10573.1" /db_xref="Phytozome:GSVIVT01022479001" /db_xref="TAIR:AT4G38040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPR6" /translation="MKIHFQRLSLSSKAMARSSLPLYYFSPRRVSSPSSKSFFFVPAT LALISTIFILFYIFTTSTLFTSHHHRHTLYLKQPLGSFPSSPLTQNVPSFSLHNNGFK NGTFDLPKRPPLKAVGGGEDATMSQVTSRPHFGSEGNFVNNLEVFHDGDIFLEDYKEM NNSFKIYVYPVKRNDPFAHALLPVDFEPGGNYASESYFKKALMKSHFITKDPTKADLF FLPFSIARLRHDRRIGTGGIQDFIRDYIFNISQKYPYWNRSGGADHFYVACHSIGRSV MAKARELKLNAIQIVCSSSYFLSGYIAHKDASLPQVWPRTGDPPNLASSKRNKLSFFA GSINSPVREKLLKFWRNDSEIAAHYGRLKTPYADELLSSKFCLHVKGFEVNTARIADS LYYGCVPIIIANYYDLPFADILNWKSFSIVVVTVDIPSLKQILRGITSDEYLSLQRNV LKVRKHFQWHVPPIDFDAFYMVMYELWLRRSSARINFSLDPKKLCK" mRNA complement(join(35402772..35403862,35404213..35404780, 35405518..35405964)) /locus_tag="TCM_025906" /product="Exostosin family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30072.m000985" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025904t1" /inference="similar to AA sequence:Phytozome:GSVIVT01022479001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc520t3_C2" CDS complement(join(35403364..35403862,35404213..35404780, 35405518..35405929)) /locus_tag="TCM_025906" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG025904t1" /codon_start=1 /product="Exostosin family protein isoform 1" /protein_id="EOY10572.1" /db_xref="Phytozome:GSVIVT01022479001" /db_xref="TAIR:AT4G38040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPR6" /translation="MKIHFQRLSLSSKAMARSSLPLYYFSPRRVSSPSSKSFFFVPAT LALISTIFILFYIFTTSTLFTSHHHRHTLYLKQPLGSFPSSPLTQNVPSFSLHNNGFK NGTFDLPKRPPLKAVGGGEDATMSQVTSRPHFGSEGNFVNNLEVFHDGDIFLEDYKEM NNSFKIYVYPVKRNDPFAHALLPVDFEPGGNYASESYFKKALMKSHFITKDPTKADLF FLPFSIARLRHDRRIGTGGIQDFIRDYIFNISQKYPYWNRSGGADHFYVACHSIGRSV MAKARELKLNAIQIVCSSSYFLSGYIAHKDASLPQVWPRTGDPPNLASSKRNKLSFFA GSINSPVREKLLKFWRNDSEIAAHYGRLKTPYADELLSSKFCLHVKGFEVNTARIADS LYYGCVPIIIANYYDLPFADILNWKSFSIVVVTVDIPSLKQILRGITSDEYLSLQRNV LKVRKHFQWHVPPIDFDAFYMVMYELWLRRSSARINFSLDPK" mobile_element complement(35405958..35407327) /note="source:CACAO_Again_on_E207_scaffold_9 449 1856" /mobile_element_type="transposon:TIR/hAT" mobile_element 35406613..35407797 /note="source:CACAO_Again_on_E124_scaffold_5 208 1231" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(35407993..35408471) /note="source:CACAO_on_E310_scaffold_10 1 517" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(35408846..35409115) /note="source:scaffold_7_CACTA_0779 12615 12899" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(35410792..35411149) /note="source:CACAO_M_S_E33_F76_scaffold_1 1 345" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 35410871..35411767 /note="source:CACAO_M_S_E119572_F76_scaffold_9 1 897" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 35411736..35412668 /note="source:scaffold_5_CACTA_0614 3673 4604" /mobile_element_type="transposon:TIR/CACTA" mobile_element 35413111..35413558 /note="source:CACAO_M_E58877_F5_scaffold_9 6556 6971" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 35414705..35415043 /note="source:CACAO_M_E58877_F5_scaffold_9 20422 20671" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 35415252..35415753 /note="source:CACAO_M_E58877_F5_scaffold_9 8496 8963" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 35415854..35418578 /note="source:CACAO_M_E58877_F5_scaffold_9 8996 11690" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(35416424..35416447,35416498..35416893)) /locus_tag="TCM_025827" /note="paralog of Thecc1EG038503t1" /codon_start=1 /product="RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H" /protein_id="EOY10467.1" /db_xref="Phytozome:Glyma06g23600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A2Q2J0" /translation="MEAVLPIEVEIPSLRVLKEVQLEEAEWVNARYEQLNLIEEKRLT ALCHRQLYQKRMMRAYDKKAHSRQFREGELVLKRILPNQHDLRGKWTPNWEGPFVVKK AFSGGALILAEMDGREFSNPVNADAIKKYFKIFKLKT" mobile_element complement(35418806..35421367) /note="source:CACAO_M_E3935_F390_scaffold_1 8169 10730" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 35421470..35422161 /note="source:CACAO_M_E12044_F76_scaffold_2 13358 14050" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 35422262..35424077 /note="source:INTACT1427F_F390_scaffold_9-int 9953 11805" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 35424178..35425495 /note="source:INTACT1427F_F390_scaffold_9-int 11848 13166" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(35427649..35427689) /note="source:scaffold_2_CACTA_0252 2440 2479" /mobile_element_type="transposon:TIR/CACTA" gene complement(35429045..35441108) /locus_tag="TCM_025908" /note="dbxref CacaoGD:Thecc1EG025908" mRNA complement(join(35429045..35429855,35430029..35430232, 35440949..35441108)) /locus_tag="TCM_025908" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014966t1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.10 coverage" CDS complement(join(35429610..35429855,35430029..35430202)) /locus_tag="TCM_025908" /note="paralog of Thecc1EG014966t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10574.1" /translation="MMERKGERYDWQGADAPCQAPLSPARREKFASGRLVELAPGCPG TRQWGVPPPEPENRRNSEIWVCLPPVGGVKSGVVCRRLGGAIAWRFAVGRRSEIWGGL PPVGGVKSGVFAAGRRSEIWVGLPPVGGATAWRFAAV" mobile_element 35429852..35429973 /note="source:CACAO_M_E58877_F5_scaffold_9 7833 7925" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(35429876..35429983) /note="source:CACAO_M_E69938_F9_scaffold_9 3842 3950" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(35429921..35429954) /note="source:CACAO_M_E44210_F112_scaffold_5 10062 10313" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 35429955..35430231 /note="source:scaffold_5_CACTA_0614 6138 6409" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(35430233..35430612) /note="source:CACAO_M_S_E4911_F76_scaffold_1 14997 15376" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(35430606..35434694) /note="source:CACAO_M_E57337_F76_scaffold_9 1 4084" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 35442837..35442897 /note="source:INTACT194_F169_scaffold_1-int 1819 1879" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(35443069..35444728) /locus_tag="TCM_025910" /note="dbxref CacaoGD:Thecc1EG025910" mRNA complement(join(35443069..35443890,35444234..35444728)) /locus_tag="TCM_025910" /product="Myb domain protein 5, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s05200.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG024180t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s05300.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9519t1" CDS complement(join(35443269..35443890,35444234..35444529)) /locus_tag="TCM_025910" /note="paralog of Thecc1EG024180t1" /codon_start=1 /product="Myb domain protein 5, putative" /protein_id="EOY10575.1" /db_xref="Phytozome:POPTR_0013s05300.1" /db_xref="TAIR:AT3G13540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPR5" /translation="MRNPSLSGTSATSKTPCCSKVGIKRGPWTPEEDELLANYIKREG EGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGRIAPDEEDLILRLHRLLGNRWSL IAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNPISHTSSQVNHDPVPKPNP IPPNFNSSQLEENTIAMTTKTTTQDFTPTNLEYHQQYDQNQQVVDSTVNRRNPDGATL IVGQPSSLGNEGDYIENCNEDMFSSFLDSLINDNLFVNQQQPNNVVAAEASTQNFTHG NIWEAEIMSSMVAFGNEQNPFINHHQHQP" mobile_element complement(35443809..35443865) /note="source:scaffold_3_CACTA_0395 966 1019" /mobile_element_type="transposon:TIR/CACTA" mobile_element 35447465..35447515 /note="source:scaffold_8_CACTA_0853 1997 2045" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(35449719..35449777) /note="source:CACAO_M_S_E101721_F266_scaffold_9 1443 1501" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 35451712..35461656 /locus_tag="TCM_025911" /note="dbxref CacaoGD:Thecc1EG025911" mRNA join(35451712..35453327,35453661..35453864, 35454288..35454392,35454874..35454939,35455022..35455186, 35456446..35456520,35456621..35456772,35457065..35457275, 35457360..35457429,35457522..35457649,35457773..35457829, 35458183..35458368,35458480..35458572,35458783..35458868, 35458953..35459019,35459103..35459169,35459270..35459406, 35460314..35460405,35460529..35460595,35460686..35461385) /locus_tag="TCM_025911" /product="ARM repeat superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29950.m001118" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040022t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400027802" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9574t1" CDS join(35452083..35453327,35453661..35453864, 35454288..35454392,35454874..35454939,35455022..35455186, 35456446..35456520,35456621..35456772,35457065..35457275, 35457360..35457429,35457522..35457649,35457773..35457829, 35458183..35458368,35458480..35458572,35458783..35458868, 35458953..35459019,35459103..35459169,35459270..35459406, 35460314..35460405,35460529..35460595,35460686..35460850) /locus_tag="TCM_025911" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG040022t1" /codon_start=1 /product="ARM repeat superfamily protein isoform 1" /protein_id="EOY10576.1" /db_xref="Phytozome:PGSC0003DMP400027802" /db_xref="TAIR:AT5G19820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93VS8" /translation="MATDPTQLQLAQLAHILGPDPTHFETLISHLMSSSNDQRSQAES LFHLAKQTQPDSLSLALSRVLSSCSRPELRALSAVLLRKILTPAADSSFLFPLLAETT RAAIKSALLSTLQTEQSKTNVKKLCDTISELASSIVAIGGWPELLPFLFQCVNSPNPN LQESALLIFSRLAQNIGETTETLIPHLNTLHSVFFKCLSNPSSCDARIAALSASISFI QCISNGKDRDTFQDLLPLMMQTLTEALNSGLEATAQEALELLIELAGSEPRFLRRQLM EVVGSMLQIAEAESLEEGTRHLAVEFVITLAEARERAPGMMRKLPQFIRRLFGVLMNM LLDVEDEQDWYNAESEDEDAGETSNYAVGQECLDRLSISLGGNTVVPVASELFPVFLA AAEWQKRHAALIALAQIAEGCSKVMIKNLEQVVSMVLNSFQDAHPRVRWAAINAIGQL STDLGPELQSQFHHKVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDG IVSKLLVLLQNGKQMVQEGALTALASVADSSQEQFQKYYDAVMPYLKAILVNANDKAN RMLRAKAMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMESDDPTTSYMLQAWAR LCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDADIDDDDESTSKMIFPLSFK VSKVFIFSFCIGCSIETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWID QVATTLVPLLKFYFHEEVRKAAVSAMPELLSSAKLAIEKGQSQVRNETYVKQLTDYII PALVEALHKEPEVEICASMLDSLNECLQVAGPFLDEGQVRCIVDEIKQVITASSARKQ ERAERAKAEDFDAEEGEMLEEENEQEEEVFGQVGDLLGTLIKTFKASFLPFFQELTSY VMPMWGKDKTAEERRIAICIFDDVAEHCREAALKYYDTYLPFVLEACNDENPDVRQAA VYGLGVCAEFGGSVFKPLVREALSRLDAVIRHPNALHADNVMAYDNAVSALGKICQFH RDSIDAAQIVPAWLSCLPIKGDLIEAKLVHDQLCSMVERSDQELLGPNNQYLPKIVAV FAEVLCAGKDLATEQTASRMINLLRHLQQSLPPSTLASTWSSLQPQQQLALQSILSS" mRNA join(35452137..35453328,35454286..35454392, 35454874..35454939,35455022..35455186,35456446..35456520, 35456621..35456772,35457140..35457275,35457360..35457429, 35457522..35457649,35457773..35457829,35458183..35458368, 35458480..35458572,35458783..35458868,35458953..35459019, 35459103..35459169,35459270..35459406,35460314..35460405, 35460529..35460595,35460686..35460936,35461420..35461656) /locus_tag="TCM_025911" /product="ARM repeat superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29950.m001118" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040022t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400027802" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc584t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9574t1" mRNA join(35452137..35453328,35454286..35454392, 35454874..35454939,35455022..35455186,35456446..35456520, 35456621..35456772,35457140..35457275,35457360..35457429, 35457522..35457649,35457773..35457829,35458183..35458368, 35458480..35458572,35458783..35458868,35458953..35459019, 35459103..35459169,35459270..35459406,35460314..35460405, 35460529..35460595,35460686..35460870,35461420..35461444) /locus_tag="TCM_025911" /product="ARM repeat superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29950.m001118" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040022t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400027802" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc584t6; alternateUTRof:Thecc1EG025911t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9574t1" CDS join(35452176..35453328,35454286..35454392, 35454874..35454939,35455022..35455186,35456446..35456520, 35456621..35456772,35457140..35457275,35457360..35457429, 35457522..35457649,35457773..35457829,35458183..35458368, 35458480..35458572,35458783..35458868,35458953..35459019, 35459103..35459169,35459270..35459406,35460314..35460405, 35460529..35460595,35460686..35460850) /locus_tag="TCM_025911" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG040022t1" /codon_start=1 /product="ARM repeat superfamily protein isoform 2" /protein_id="EOY10577.1" /db_xref="Phytozome:PGSC0003DMP400027802" /db_xref="TAIR:AT5G19820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q53RB7" /translation="MSSSNDQRSQAESLFHLAKQTQPDSLSLALSRVLSSCSRPELRA LSAVLLRKILTPAADSSFLFPLLAETTRAAIKSALLSTLQTEQSKTNVKKLCDTISEL ASSIVAIGGWPELLPFLFQCVNSPNPNLQESALLIFSRLAQNIGETTETLIPHLNTLH SVFFKCLSNPSSCDARIAALSASISFIQCISNGKDRDTFQDLLPLMMQTLTEALNSGL EATAQEALELLIELAGSEPRFLRRQLMEVVGSMLQIAEAESLEEGTRHLAVEFVITLA EARERAPGMMRKLPQFIRRLFGVLMNMLLDVEDEQDWYNAESEDEDAGETSNYAVGQE CLDRLSISLGGNTVVPVASELFPVFLAAAEWQKRHAALIALAQIAEGCSKEAHAASAV LNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEQFQKYYD AVMPYLKAILVNANDKANRMLRAKAMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGS QMESDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDAD IDDDDESIETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVATTLV PLLKFYFHEEVRKAAVSAMPELLSSAKLAIEKGQSQVRNETYVKQLTDYIIPALVEAL HKEPEVEICASMLDSLNECLQVAGPFLDEGQVRCIVDEIKQVITASSARKQERAERAK AEDFDAEEGEMLEEENEQEEEVFGQVGDLLGTLIKTFKASFLPFFQELTSYVMPMWGK DKTAEERRIAICIFDDVAEHCREAALKYYDTYLPFVLEACNDENPDVRQAAVYGLGVC AEFGGSVFKPLVREALSRLDAVIRHPNALHADNVMAYDNAVSALGKICQFHRDSIDAA QIVPAWLSCLPIKGDLIEAKLVHDQLCSMVERSDQELLGPNNQYLPKIVAVFAEVLCA GKDLATEQTASRMINLLRHLQQSLPPSTLASTWSSLQPQQQLALQSILSS" CDS join(35452176..35453328,35454286..35454392, 35454874..35454939,35455022..35455186,35456446..35456520, 35456621..35456772,35457140..35457275,35457360..35457429, 35457522..35457649,35457773..35457829,35458183..35458368, 35458480..35458572,35458783..35458868,35458953..35459019, 35459103..35459169,35459270..35459406,35460314..35460405, 35460529..35460595,35460686..35460850) /locus_tag="TCM_025911" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG040022t1" /codon_start=1 /product="ARM repeat superfamily protein isoform 2" /protein_id="EOY10578.1" /db_xref="Phytozome:PGSC0003DMP400027802" /db_xref="TAIR:AT5G19820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q53RB7" /translation="MSSSNDQRSQAESLFHLAKQTQPDSLSLALSRVLSSCSRPELRA LSAVLLRKILTPAADSSFLFPLLAETTRAAIKSALLSTLQTEQSKTNVKKLCDTISEL ASSIVAIGGWPELLPFLFQCVNSPNPNLQESALLIFSRLAQNIGETTETLIPHLNTLH SVFFKCLSNPSSCDARIAALSASISFIQCISNGKDRDTFQDLLPLMMQTLTEALNSGL EATAQEALELLIELAGSEPRFLRRQLMEVVGSMLQIAEAESLEEGTRHLAVEFVITLA EARERAPGMMRKLPQFIRRLFGVLMNMLLDVEDEQDWYNAESEDEDAGETSNYAVGQE CLDRLSISLGGNTVVPVASELFPVFLAAAEWQKRHAALIALAQIAEGCSKEAHAASAV LNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEQFQKYYD AVMPYLKAILVNANDKANRMLRAKAMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGS QMESDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDAD IDDDDESIETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVATTLV PLLKFYFHEEVRKAAVSAMPELLSSAKLAIEKGQSQVRNETYVKQLTDYIIPALVEAL HKEPEVEICASMLDSLNECLQVAGPFLDEGQVRCIVDEIKQVITASSARKQERAERAK AEDFDAEEGEMLEEENEQEEEVFGQVGDLLGTLIKTFKASFLPFFQELTSYVMPMWGK DKTAEERRIAICIFDDVAEHCREAALKYYDTYLPFVLEACNDENPDVRQAAVYGLGVC AEFGGSVFKPLVREALSRLDAVIRHPNALHADNVMAYDNAVSALGKICQFHRDSIDAA QIVPAWLSCLPIKGDLIEAKLVHDQLCSMVERSDQELLGPNNQYLPKIVAVFAEVLCA GKDLATEQTASRMINLLRHLQQSLPPSTLASTWSSLQPQQQLALQSILSS" gene 35463531..35464736 /locus_tag="TCM_025913" /note="dbxref CacaoGD:Thecc1EG025913" mRNA 35463531..35464736 /locus_tag="TCM_025913" /product="AP2/ERF domain-containing transcription factor, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma16g04410.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040015t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033416001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2753t1_C2" CDS 35463539..35464381 /locus_tag="TCM_025913" /note="paralog of Thecc1EG040015t1" /codon_start=1 /product="AP2/ERF domain-containing transcription factor, putative" /protein_id="EOY10579.1" /db_xref="Phytozome:GSVIVT01033416001" /db_xref="TAIR:AT5G19790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5W8" /translation="MEIQFQQQEQQQQLHRKSSNIPVSKGGKFKGRNKNNGKVNKFVG VRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITQVS LDSPLASRIRNLLNSKKGAKEQSVLVSAPTTTTSASTNPSPSSSTSSSSCNSSRGLSN DNSSPTGMVQDTQLFEDAYKPDMSHCARGFEFASSQSDFSHTSEPGFDRFLYTQEIMN FPKNVLLPEETGSELTEFQRMKVERQISASLYAMNGVQEYLETVHDSAEALWDLPPLC SLFC" gene complement(35465967..35469081) /locus_tag="TCM_025914" /note="dbxref CacaoGD:Thecc1EG025914" mRNA complement(join(35465967..35466512,35466660..35467168, 35467291..35467490,35467581..35467795,35468303..35468401, 35468804..35469081)) /locus_tag="TCM_025914" /product="Tubulin alpha-5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s05160.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040014t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s04180.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02362t00001" CDS complement(join(35466200..35466512,35466660..35467168, 35467291..35467490,35467581..35467795,35468303..35468401, 35468804..35468916)) /locus_tag="TCM_025914" /note="paralog of Thecc1EG040014t1" /codon_start=1 /product="Tubulin alpha-5" /protein_id="EOY10580.1" /db_xref="Phytozome:POPTR_0001s04180.1" /db_xref="TAIR:AT5G19780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P68363" /translation="MREVISVHIGQAGIQVGNACWELYCLEHGIQPDGMMPSQKFYQY EPDALTSNYAQMVKAAELSPLFGAGFFDTSLGACHDAFNTFFSETGSGKHVPRAIFVD LEPTVIDEVRAGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRIRKLAD NCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPY NSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLR FDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQLSVPEITSAVFEPSSM MAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQP PTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGE FSEAREDLAALEKDYEEVGAEGAEDEEEPEDY" mobile_element complement(35468754..35468802) /note="source:CACAO_M_E12463_F12_scaffold_3 4600 4648" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 35470789..35470889 /note="source:CACAO_Mutator_E161_scaffold_1 5667 5768" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(35471706..35471756) /note="source:scaffold_4_CACTA_0491 535 585" /mobile_element_type="transposon:TIR/CACTA" gene 35471963..35475739 /locus_tag="TCM_025915" /note="dbxref CacaoGD:Thecc1EG025915" mRNA join(35471963..35472150,35472277..35472378, 35472862..35472957,35473060..35473091,35475188..35475241, 35475452..35475739) /locus_tag="TCM_025915" /product="Copper/zinc superoxide dismutase 3 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s05350.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025950t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s05350.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9553t2; inference alignment:Newbler:10:TSA:cgbaP1_g09400t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc715t5" mRNA join(35471996..35472150,35472277..35472378, 35472862..35472957,35473060..35473091,35473313..35473388, 35475188..35475241,35475452..35475650) /locus_tag="TCM_025915" /product="Superoxide dismutase [Cu-Zn] 2 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s05350.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025950t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s05350.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g09400t00001; inference alignment:Newbler:10:TSA:cgbaP1_g09400t00001" mRNA join(35472019..35472150,35472277..35472378, 35472862..35472957,35473060..35473091,35473313..35473388, 35475188..35475241,35475404..35475480) /locus_tag="TCM_025915" /product="Superoxide dismutase [Cu-Zn] 2 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s05350.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025950t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s05350.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc703t5; inference alignment:Newbler:10:TSA:cgbaP1_g09400t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc715t5" mRNA join(<35472019..35472148,35472277..35472378, 35472862..35472957,35473060..35473091,35473313..35473382, 35475188..35475223,35475452..>35475475) /locus_tag="TCM_025915" /product="Copper/zinc superoxide dismutase 3 isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s05350.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025950t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s05350.1" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc632t5; inference alignment:Newbler:10:TSA:cgbaP1_g09400t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc715t5" CDS join(<35472019..35472148,35472277..35472378, 35472862..35472957,35473060..35473091,35473313..35473382, 35475188..35475223,35475452..>35475474) /locus_tag="TCM_025915" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG025950t1" /codon_start=1 /product="Copper/zinc superoxide dismutase 3 isoform 5" /protein_id="EOY10585.1" /db_xref="Phytozome:POPTR_0013s05350.1" /db_xref="TAIR:AT5G18100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O49044" /translation="NREATVEVEDKEWKVVRKEHSKLWLSSLETTTLEALFTSLNSQR ITHVKGKITGLSPGLHGFHIHALGDTTNGCNSTGPHFNPFKKDHGAPSDGERHAGDLG NIIAGLDGVAEVSIKDWQIPLSGPHSILGRAVVVHADPDDLGGHELSKTTGNAGIIGL QSS" mRNA join(35472019..35472150,35472277..35472378, 35472862..35472957,35473060..35473091,35473313..35473388, 35474394..35474514,35475188..35475212) /locus_tag="TCM_025915" /product="Superoxide dismutase [Cu-Zn] 2 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s05350.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025950t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s05350.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc703t4; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc715t5; inference alignment:Newbler:10:TSA:cgbaP1_g09400t00001" CDS join(35472054..35472150,35472277..35472378, 35472862..35472957,35473060..35473091,35475188..35475241, 35475452..35475517) /locus_tag="TCM_025915" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG025950t1" /codon_start=1 /product="Copper/zinc superoxide dismutase 3 isoform 4" /protein_id="EOY10584.1" /db_xref="Phytozome:POPTR_0013s05350.1" /db_xref="TAIR:AT5G18100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O49044" /translation="MEGGSKGTLKAVALIVGDNNVRGSLHFSQFPNGITHVKGKITGL SPGLHGFHIHALGDTTNGCNSTGPHFNPFKKDHGAPSDGERHAGDLGNIIAGLDGVAE VSIKDWQVGMNLARQLGMQVQELDVVSLAFNHLFRSSLVAVKGCLT" CDS join(35472054..35472150,35472277..35472378, 35472862..35472957,35473060..35473091,35473313..35473388, 35475188..35475241,35475452..35475480) /locus_tag="TCM_025915" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG025950t1" /codon_start=1 /product="Superoxide dismutase [Cu-Zn] 2 isoform 1" /protein_id="EOY10581.1" /db_xref="Phytozome:POPTR_0013s05350.1" /db_xref="TAIR:AT5G18100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O49044" /translation="MEGGSKGTLKAVALIVGDNNVRGSLHFSQFPNGITHVKGKITGL SPGLHGFHIHALGDTTNGCNSTGPHFNPFKKDHGAPSDGERHAGDLGNIIAGLDGVAE VSIKDWQIPLSGPHSILGRAVVVHADPDDLGRGGHELSKTTGNAGARVGCGIIGLQSS V" CDS join(35472054..35472150,35472277..35472378, 35472862..35472957,35473060..35473091,35473313..35473388, 35475188..35475241,35475404..35475441) /locus_tag="TCM_025915" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG025950t1" /codon_start=1 /product="Superoxide dismutase [Cu-Zn] 2 isoform 2" /protein_id="EOY10582.1" /db_xref="Phytozome:POPTR_0013s05350.1" /db_xref="TAIR:AT5G18100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O49044" /translation="MEGGSKGTLKAVALIVGDNNVRGSLHFSQFPNGITHVKGKITGL SPGLHGFHIHALGDTTNGCNSTGPHFNPFKKDHGAPSDGERHAGDLGNIIAGLDGVAE VSIKDWQIPLSGPHSILGRAVVVHADPDDLGRGGHELSKTTGNAGARVGCDAACMQNG LTFD" CDS join(35472054..35472150,35472277..35472378, 35472862..35472957,35473060..35473091,35473313..35473388, 35474394..35474404) /locus_tag="TCM_025915" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG025950t1" /codon_start=1 /product="Superoxide dismutase [Cu-Zn] 2 isoform 3" /protein_id="EOY10583.1" /db_xref="Phytozome:POPTR_0013s05350.1" /db_xref="TAIR:AT5G18100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O49044" /translation="MEGGSKGTLKAVALIVGDNNVRGSLHFSQFPNGITHVKGKITGL SPGLHGFHIHALGDTTNGCNSTGPHFNPFKKDHGAPSDGERHAGDLGNIIAGLDGVAE VSIKDWQIPLSGPHSILGRAVVVHADPDDLGREGV" gene complement(35475816..35479839) /locus_tag="TCM_046806" /note="dbxref CacaoGD:Thecc1EG046806" mRNA complement(join(35475816..35476507,35476619..35476966, 35477043..35477270,35477372..35477584,35477681..35477812, 35477885..35478025,35478908..35479232,35479337..35479839)) /locus_tag="TCM_046806" /product="Cellulose synthase like E1, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007038001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046807t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s00620.1" /note="quality class is strong-expertchoice, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc4379t9" CDS complement(join(35475959..35476507,35476619..35476966, 35477043..35477270,35477372..35477584,35477681..35477812, 35477885..35478025,35478908..35479232,35479337..35479608)) /locus_tag="TCM_046806" /note="paralog of Thecc1EG046807t1" /codon_start=1 /product="Cellulose synthase like E1, putative" /protein_id="EOY10586.1" /db_xref="Phytozome:POPTR_0006s00620.1" /db_xref="TAIR:AT1G55850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HJV3" /translation="MGSNGYLPLFATRSARGLVLFRSYAASIFIGICFICFYRVSYCP VEGKTERWAWIGVFLAELWFSFYFFITAVVRWNPVFRYTFKDRLSSRYNEEALPGVDI FVCTADPRIEPPMMVINTVLSVMAYDYPSEKLSVYLSDDGGSDLTFYALLEAARFSQI WLPFCRNLKVEPRSPEAYFSYAAEPADDSVMAKEWLFVKKSYEDMKMRIETITEQGRI PVGISKLHKGFRDWDLVSSRHDHQAILQILIDGRDPNAMDVEGKPLPTLVYLAREKRP QHHHNFKAGALNALIRVSSSISNAPFILTVDCDMYSNNSETIKDVLCFFLDEEKGHEI GYVQYPQSFGNLTKNDIYGSSLRVVMEVELAGFDGNGGPCYIGTGCVHRREALCGMKY SKEFKVEWRATKNDRGIKESASVLEENCKALASCTYEETTQWGKEIGLKYGCPVEDVL TAISIQSRGWRSVYFIPERKAFLGVVPTTLLQSLVQHKRWADGDLQIFLSKHCPFVYG RERMPLMLQLSYCNYLLWAVNCLASLYYVTVPSFCLLKGIPLFPKISSSWPLPFLYVI TVDCAYGLVEFVWCGGTVRGWLNEQRMWMFRRTTSYLFAFIDNILKLCGFSKTAFVIT GKVADDHVYQRYEQEIMEFGTTSPMFTILATLALFNLFSFVGVIKKVALDEVHTKVFD LFGLQILLCFILVFLNLPIYQGLFFRNDNGKMPPSITYQSLTFAVFACTIAMY" mobile_element 35481078..35481596 /note="source:CACAO_Mariner_E220_scaffold_9 8432 8964" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene complement(35482127..35486180) /locus_tag="TCM_046807" /note="dbxref CacaoGD:Thecc1EG046807" mRNA complement(join(35482127..35482943,35483093..35483440, 35483523..35483744,35483849..35484061,35484154..35484242, 35484416..35484527,35484926..35485250,35485348..35486180)) /locus_tag="TCM_046807" /product="Cellulose synthase like E1, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007038001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046806t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s00620.1" /note="quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc6036t1" CDS complement(join(35482395..35482943,35483093..35483440, 35483523..35483744,35483849..35484061,35484154..35484242, 35484416..35484527,35484926..35485250,35485348..35485637)) /locus_tag="TCM_046807" /note="paralog of Thecc1EG046806t1" /codon_start=1 /product="Cellulose synthase like E1, putative" /protein_id="EOY10587.1" /db_xref="Phytozome:POPTR_0006s00620.1" /db_xref="TAIR:AT1G55850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HJV3" /translation="MNEGERGSKGYLPLFETVPARGCLPFQLFSASTFIGTCFIWVYR ASYIPGVEGKTERWAWIGLFLAELWFSFYWSLTLVRRWNPVFRYTFKDRLSSRYNQEA LPSVDIFVCTADPGIEPPIMVINTVLSVMAYDYPTEKISVYLSDDGSSDLTFYAMLEA ARFSQIWLPFCRKLKVEPRSPEAFFSNAAEPPDDSVIAEEWLSIKKSYEDLKIGIETI TKLGRIPADMRKEHKGFREWDFVSRKPLPTLVYVAREKRPQYHHNYKTGAMNALIRVS ARISNAPIILNVDCDMYSNNSEAIKNAMCFFMDEEKGLEIAYVQYPQSFYNLSKNDLY SSSLRVVVELELPGFDANGGPSYIGTGCFHRRESLCGKKYSKDFNVEWRNVNKKVQES ARVLEDTCKVLASCTYEQNTDWGNEMGLKYGCPLEDIITGLSRQCRGWRSIYYNPERK AFLGVVPTTLLQYLVQHKRWAEGDLQIFLSKYCPLIYGHGRIPLKLQLSYCPYLLWAV NCFATLYYVTVPSLCLLKGIPLFPKMSSPWVLSFTYVLFANCAYSLGEVIWCGGTIQE WLNDQRMWMFKRTSSYFFAFFDTILKLFGFSESAFVITEKVADEQTSQRYEQEVMEFG TPSLMFKILATLALLNLFSCAGGIKKVVTHYDHIKTLDQFGLQMLLCSLLVYLNLPVY QGLFFRKDSGKMPASVTYQSIIYALLACTVAMY" gene complement(35486204..35490989) /locus_tag="TCM_025918" /note="dbxref CacaoGD:Thecc1EG025918" mRNA complement(join(35486204..35486898,35487207..35487554, 35487673..35487897,35488049..35488261,35488335..35488466, 35488566..35488694,35489738..35490059,35490212..35490989)) /locus_tag="TCM_025918" /product="Cellulose synthase like E1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01007333001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025920t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s00620.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.35 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc424t11" CDS complement(join(35486350..35486898,35487207..35487554, 35487673..35487897,35488049..35488261,35488335..35488466, 35488566..35488694,35489738..35490059,35490212..35490483)) /locus_tag="TCM_025918" /note="paralog of Thecc1EG025920t1" /codon_start=1 /product="Cellulose synthase like E1" /protein_id="EOY10588.1" /db_xref="Phytozome:POPTR_0006s00620.1" /db_xref="TAIR:AT1G55850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HJV3" /translation="MAKDDYVPLFETRPVKGRILFRLFAASIFVGICFICVYRVRFLP VEGKVERWTWIGLFLAELWFSLYWFLTTVCRWNSVYRFPYKDRLSQRFEKELPGVDIF VCTADPLIEPPSLVINTVLSVMAYDYPPEKLSIYLSDDGGSDLTFYAMLEAATFSKQW LPFCKKFKVEPRSPEAYFRTAFEPVNDPVKAREWLSVKDMKLRIETTTKLNRIPEDIR KQHKGFREWDFVSSKRDHQTILQILIDGRDPNAVDVEGRPLPTLVYLAREKRPQFHHH FKAGAMNALIRVSSRISNGPIILNVDCDMYSNNSMSIKDSLCFFMDEEKGDEFAYIQY PQNYENLTKNELYSGSFRVAKKLEFPGLDANGGPCYIGSGCFHRREALSGKKYDKGCK VDWKRLNDNMVEESVSVLEETCKVLASCTFEQNTQWGKEMGLKYGCPVEDIITGLSIQ CRGWKSIYLNPQREAFLGVAPTALLQMLIQHKRWSEGHLQIFLSRYCSLLYGHKKIPL KLRLAYCPYNLWAANCLATLYYVAVPCLCLLKDISLFPKTSSLWVLPFAYVAFAHRVH SLGEFLWCGGTFQGWYNDQRMWMFKRTTSYFFAFVDTILKLLGYSKAAFVITAKVADD DVSKRYEQELIEFGATSPMFDILATLAMLNLFSSLGAIKKVILEADHSKVLDLFGLQI LLCLLLVTINFPVYQALFFRKDNGRMPSSVTYKSIVFASLACALSMY" gene complement(35491037..35500239) /locus_tag="TCM_025919" /note="dbxref CacaoGD:Thecc1EG025919" mRNA complement(join(35491037..35491307,35493260..35493930, 35494240..35494587,35494697..35494921,35495051..35495263, 35495340..35495471,35495659..35495763,35497128..35497449, 35497622..35498127,35500037..35500239)) /locus_tag="TCM_025919" /product="Cellulose synthase like E1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s00620.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025920t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s00620.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.38 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc415t11" CDS complement(join(35493382..35493930,35494240..35494587, 35494697..35494921,35495051..35495263,35495340..35495471, 35495659..35495763,35497128..35497449,35497622..35497893)) /locus_tag="TCM_025919" /note="paralog of Thecc1EG025920t1" /codon_start=1 /product="Cellulose synthase like E1" /protein_id="EOY10589.1" /db_xref="Phytozome:POPTR_0006s00620.1" /db_xref="TAIR:AT1G55850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HJV3" /translation="MAKDDYVPLFETRPVKGRILFRLFAASIFVGICFICIYRVRFLP EEGKVERWTWIGLFLAELWFSFYWFLTAVCRWDSVYRLPYKDRLSQRFDKELPGVDIF VCTADPLIEPPSLVINTVLSVMAYDYPPEKLSIYLSDDGGSDLTFYAMLEAATFSKQW LPFCKKFKVEPRSAEAYFRTAFEPREDPVKAREWLSVRKLYEDMKMRIETTTKLNRIP DDIRKQHKGFREWDFILIDGRDPNAVDVEGRPLPTLVYLAREKRPQFHHHFKAGAMNA LIRVSSRISNGPIVLNVDCDMYSNNSESIKNSLCFFMDEEKGDEFAYVQYPQNFENLT KNELYGSSFRVINKLELPGLDANGGPCYIGSGCFHRREALCGKKYDKDCKVDWKRLHE RKVKESASVLEETGKVLACCTFEQNTQWGKEMGLTYGCPAEDVITGLTIQCRGWKSIY LIPQREDFLGVSPTTLLQMLIQHKRWTEGHLQIFLSRYCSLLYGHKKIPLKLRLAYCP YNLWAANCLATLYYVAVPCLCLLKDISLFPKTSTLWVVPFAYVAFAHRVHSLGEFLWC GGTFQGWFNDQRMWMFKRTTSYFFAFFDTILNLLGFSKAAFVITAKVADDDVSKRYEQ ELIEFGATSPMFDILATLAMLNLFSSLGAMKKVILEADHSKVLDLFGLQILLCLLLVT INFPVYQALFFRKDNGRMPSSVTYKSIGFALLACTLAMY" mobile_element complement(35495971..35496062) /note="source:scaffold_9_CACTA_0942 5247 5339" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(35496362..35496403) /note="source:CACAO_M_E427_F230_scaffold_1 1104 1140" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(35498129..35508240) /locus_tag="TCM_025920" /note="dbxref CacaoGD:Thecc1EG025920" mRNA complement(join(35498129..35498504,35500314..35500796, 35500886..35501064,35501403..35501457,35503812..35504303, 35504447..35504794,35504904..35505128,35505258..35505470, 35505547..35505678,35505755..35505895,35507256..35507577, 35507750..35508240)) /locus_tag="TCM_025920" /product="Cellulose synthase like E1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s00620.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025919t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s00620.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9668t1" mobile_element complement(35498169..35498254) /note="source:INTACT433_F212_scaffold_1-int 3050 3135" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(35498255..35498296) /note="source:scaffold_4_CACTA_0483 2528 2648" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(35500665..35500796,35500886..35501064, 35501403..35501457,35503812..35504303,35504447..35504794, 35504904..35505128,35505258..35505470,35505547..35505678, 35505755..35505895,35507256..35507577,35507750..35508021)) /locus_tag="TCM_025920" /note="paralog of Thecc1EG025919t1" /codon_start=1 /product="Cellulose synthase like E1" /protein_id="EOY10590.1" /db_xref="Phytozome:POPTR_0006s00620.1" /db_xref="TAIR:AT1G55850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HJV3" /translation="MAKDDYVPLFETRPFKGRILFRLFAASIFVGICFICIYRVRFLP EEGKVERWTWIGLFLAELWFSFYWFLTAVCRWDSVYRLPYKDRLSQRFDKELPGVDIF VCTADPLIEPPSLVINTVLSVMAYDYPPEKLSIYLSDDGGSDLTFYAMLEAATFSKQW LPFCKKFKVEPRSAEAYFRTAFEPREDPVKAREWLSVKKLYEDMKMRIETTTKLNRIP EDIRKQHKGFREWDFVSSKHDHQTILQILIDGRDPNAVDVEGRPLPTLVYLAREKRPQ FHHHFKAGAMNALIRVSSRISNGPIILNVDCDMYSNNSESIKNSLCFFMDEEKGDEFA YVQYPQNFENLTKNELYGGSYRVIQKLEFPGLDANGGPCYIGSGCFHRREALCGKKYD KDCKVDWKRLHERKVKESASVLEETCKVLASCTFEQNTQWGKEMGLTYGCPVEDVITG LTIQCRGWKSIYLMPQREDFLGVSPTTLLQMLIQHKRWSEGHLQIFLSRYCSLLYGHK KIPLKLRLAYCPYNLWGANCLATLYYVAVPCLCLLRAISLFPKTSSLWVLPFAYVAFA HRAYSLGEFLWCGGTFQGWCNDQRMWMFKRTTSYFFGFFDTILKLLGYSKAAFVITAK IADDEVLKRYEQELIEFGATSPMFDILATLAMLNLFSSLGAIKKVILEADHSKVLDLF GLQILLCLLLVTINFPVYQALFFRKDNGRMPSSSVDGTLSTGFLTKTGSLKGALCWVP DDGHLILVCMCLKVLALVVDQLDYGDNICGAVLSIRFNEDILSVWNRNVSDHQAVMAL RDSIKRHLKLPHSYVMEYKPHDASLRDNSSYRKAWLRG" mobile_element 35506075..35506411 /note="source:scaffold_1_CACTA_0008 14035 14397" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(35506494..35506535) /note="source:CACAO_M_E85113_F12_scaffold_10 11801 11842" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(35509256..35513070) /locus_tag="TCM_025921" /note="dbxref CacaoGD:Thecc1EG025921" mRNA complement(join(35509256..35509766,35509856..35509975, 35511068..35511145,35511284..35511388,35511531..35511626, 35512650..35513070)) /locus_tag="TCM_025921" /product="Cap-binding protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033412001" /inference="similar to AA sequence:Phytozome:GSVIVT01033412001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14763t2" mRNA complement(join(35509256..35509766,35509856..35509975, 35511068..35511388,35511531..35511626,35512650..35513070)) /locus_tag="TCM_025921" /product="Cap-binding protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033412001" /inference="similar to AA sequence:Phytozome:GSVIVT01033412001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:PASA:2:TSA:puevd3b025068t1a2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14763t2" CDS complement(join(35509635..35509766,35509856..35509975, 35511068..35511145,35511284..35511388,35511531..35511626, 35512650..35512817)) /locus_tag="TCM_025921" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Cap-binding protein isoform 1" /protein_id="EOY10591.1" /db_xref="Phytozome:GSVIVT01033412001" /db_xref="TAIR:AT5G18110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TI73" /translation="MEISEKKEAEINNSSKDSNNNSNIKVEFTDSDTNNMNKEAEERQ ARELKAGLHPLKHKYVFWYTRRTPGVRTQTAYEDNIKKIVDFSTVEGFWVCYCHLARP STLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDY GDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHGYVMEYKPHDAS LRDNSSYRNAWLRG" CDS complement(join(35509635..35509766,35509856..35509975, 35511068..35511388,35511531..35511626,35512650..35512817)) /locus_tag="TCM_025921" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Cap-binding protein isoform 2" /protein_id="EOY10592.1" /db_xref="Phytozome:GSVIVT01033412001" /db_xref="TAIR:AT5G18110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TI73" /translation="MEISEKKEAEINNSSKDSNNNSNIKVEFTDSDTNNMNKEAEERQ ARELKAGLHPLKHKYVFWYTRRTPGVRTQTAYEDNIKKIVDFSTVEGFWVCYCHLARP STLPSPTDLHLFKEGIRPLWEVIIEGLTFKLCVPITVSIKLYNSCQILNILFKMMPMC FVIKFGISQDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIR FNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHGYVMEYKPHDASLRDNSSYRNAWL RG" gene 35513711..35514177 /locus_tag="TCM_025922" /note="dbxref CacaoGD:Thecc1EG025922" mRNA 35513711..35514177 /locus_tag="TCM_025922" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.58 coverage" CDS 35513733..35513987 /locus_tag="TCM_025922" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10593.1" /translation="MEGSIGAPQRKKHQSGAPKEREHRSRGSTRSREHQIKGASEGAL DLVLPSREEHQSMLFSLASTDLVLPLLGALDQCFPFLGST" mobile_element complement(35514125..35514206) /note="source:scaffold_4_CACTA_0505 10645 10730" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(35514535..35514637) /note="source:CACAO_M_E4221_F305_scaffold_2 1776 1835" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 35514581..35514662 /note="source:CACAO_M_S_E32752_F12_scaffold_4 4128 4207" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 35515208..35520750 /locus_tag="TCM_025923" /note="dbxref CacaoGD:Thecc1EG025923" mRNA join(35515208..35515437,35518778..35518959, 35519671..35519795,35520031..35520750) /locus_tag="TCM_025923" /product="APR-like 5, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s05370.1" /inference="similar to AA sequence:Phytozome:POPTR_0019s05130.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08790t00001" CDS join(35515273..35515437,35518778..35518959, 35519671..35519795,35520031..35520458) /locus_tag="TCM_025923" /codon_start=1 /product="APR-like 5, putative" /protein_id="EOY10594.1" /db_xref="Phytozome:POPTR_0019s05130.1" /db_xref="TAIR:AT3G03860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPQ9" /translation="MGSSSSSLLLFFYITALYSLRCVLGSSICSHEADVFIKSLHFQC SPSISPIPPLKVNGNFLDRALASKQRNGYTAVLFYASWCPFSCSLHPKFDILSSMFPQ FEHLMVEQSSAWPSLFSRYGIHSLPSILVVNQTSSVRYRGPKDLPSIMQFYEKITGFE PVQNVAENKQVVSGNYNRYIIQSWNESSLMDIVKREQYLAFAVLFLCLRVLLSIFPEV LSRLKAFWVSYAPHLNLEIFGETSQLFVRALHMVDVRRVWTKLRLCKTRNFHQGAKSA RVWASSLASVSLGESSGRSSSSS" gene 35522420..35524959 /locus_tag="TCM_025924" /note="dbxref CacaoGD:Thecc1EG025924" mRNA join(35522420..35523448,35523958..35524404) /locus_tag="TCM_025924" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:29950.m001124" /inference="similar to AA sequence:Phytozome:Glyma02g07990.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9587t1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1250t1" mRNA join(35522479..35523448,35523903..35524959) /locus_tag="TCM_025924" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29950.m001124" /inference="similar to AA sequence:Phytozome:POPTR_0019s05120.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.72 coverage" mRNA join(35522569..35523448,35523787..35524916) /locus_tag="TCM_025924" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29950.m001124" /inference="similar to AA sequence:Phytozome:Glyma02g07990.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1204t2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1250t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1246t2" CDS join(35522684..35523448,35523903..35524019) /locus_tag="TCM_025924" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY10595.1" /db_xref="Phytozome:POPTR_0019s05120.2" /db_xref="TAIR:AT3G03870.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5X3" /translation="MIHQEMDIDHEWVFLPDNGFRDINQDGEKKVHGGKRSSDTKLVL LTDYFDMEQRPPSGNSMRVPKQVVPVSFPLEPRILKAPENALGKETTTWVPISVTSTP SMIPEKIKEPDIGSVEADKEVKTQVSFRKPSYNESVDMTQKMDSPKSTTRGVIPQIDS AGTFNFDDKSEVLENKSSPRRKDLVEKKVENEDVTWEENSGGLNLWKWSLTGIGAICS FGVAAATFCIIILGSQQRHRQQQQNQKLSFQRYADDKRMKQVVQHVTKLNEAISAVRG GPTTRARITYGGYYDGL" CDS join(35522684..35523448,35523958..35523990) /locus_tag="TCM_025924" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY10597.1" /db_xref="Phytozome:Glyma02g07990.1" /translation="MIHQEMDIDHEWVFLPDNGFRDINQDGEKKVHGGKRSSDTKLVL LTDYFDMEQRPPSGNSMRVPKQVVPVSFPLEPRILKAPENALGKETTTWVPISVTSTP SMIPEKIKEPDIGSVEADKEVKTQVSFRKPSYNESVDMTQKMDSPKSTTRGVIPQIDS AGTFNFDDKSEVLENKSSPRRKDLVEKKVENEDVTWEENSGGLNLWKWSLTGIGAICS FGVAAATFCIIILGSQQRHRQQQQNQKLSFQRYADDKLEEVQPPELA" CDS join(35522684..35523448,35523787..35523846) /locus_tag="TCM_025924" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY10596.1" /db_xref="Phytozome:Glyma02g07990.1" /translation="MIHQEMDIDHEWVFLPDNGFRDINQDGEKKVHGGKRSSDTKLVL LTDYFDMEQRPPSGNSMRVPKQVVPVSFPLEPRILKAPENALGKETTTWVPISVTSTP SMIPEKIKEPDIGSVEADKEVKTQVSFRKPSYNESVDMTQKMDSPKSTTRGVIPQIDS AGTFNFDDKSEVLENKSSPRRKDLVEKKVENEDVTWEENSGGLNLWKWSLTGIGAICS FGVAAATFCIIILGSQQRHRQQQQNQKLSFQRYADDKESKFKSNTISCKITVHQKY" gene complement(35527678..35528866) /locus_tag="TCM_025925" /note="dbxref CacaoGD:Thecc1EG025925" mRNA complement(35527678..35528866) /locus_tag="TCM_025925" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.47 coverage" CDS complement(35528059..35528382) /locus_tag="TCM_025925" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10598.1" /translation="MRLIRKKKPSAVLQFRILSVSLALLLLTAWLSLLGIASLLLSMI IFFFLAKYFISPSNAIAVSLLCCGLSSSVPTSVSFSFSHEPPSSRLSLIFSTSLRSQD QWQIC" gene 35538120..35540610 /locus_tag="TCM_025926" /note="dbxref CacaoGD:Thecc1EG025926" mRNA join(35538120..35538350,35538448..35538491, 35538810..35539026,35539531..35539822,35540084..35540161, 35540288..35540610) /locus_tag="TCM_025926" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29950.m001125" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038727t1" /inference="similar to AA sequence:ricco:29950.m001125" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02564t00001" CDS join(35538812..35539026,35539531..35539822, 35540084..35540161,35540288..35540338) /locus_tag="TCM_025926" /note="dbxref ricco:29950.m001125; paralog of Thecc1EG038727t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10599.1" /db_xref="TAIR:AT1G55340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5X5" /translation="MEKEERGQKTCKTIEPELFLQWGNRKRLRCVRVKDPQKISHKSN AVIRRRITSRLLEKESSPFSQPNHRLTRNSEAAILRSGTTEHRKTLSSEKEDRYYTTR GSSVGLVDENGKVADSNNGEDNKGLVWPKLFITLSSKEKEEDFMAMKGCKPPQRPKKR AKIIQRSLLLVSPGAWLTDMCQERYEVREKKSSKKRPRGLKAMGSMESDSD" gene complement(35541200..35546455) /locus_tag="TCM_025927" /note="dbxref CacaoGD:Thecc1EG025927" mRNA complement(join(35541200..35541597,35541928..35542011, 35542372..35542437,35542621..35542671,35543217..35543282, 35543379..35543446,35543693..35543783,35543885..35543950, 35544084..35544179,35544616..35544714,35545644..35545730, 35545855..35545917,35546086..35546455)) /locus_tag="TCM_025927" /product="FMN binding" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g28920.1" /inference="similar to AA sequence:Phytozome:POPTR_0019s05080.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9589t4" CDS complement(join(35541547..35541597,35541928..35542011, 35542372..35542437,35542621..35542671,35543217..35543282, 35543379..35543446,35543693..35543783,35543885..35543950, 35544084..35544179,35544616..35544714,35545644..35545730, 35545855..35545917,35546086..35546253)) /locus_tag="TCM_025927" /codon_start=1 /product="FMN binding" /protein_id="EOY10600.1" /db_xref="Phytozome:POPTR_0019s05080.1" /db_xref="TAIR:AT3G03890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LDU1" /translation="MRTLAAPCTLSLVSRLKVYKSPSSSPMFQLCHSPFSLIPFPRPL SIMASATPSSSQAVSPGDVNKETNVFQLVQAHQEKAARLPPVEEIRTVLDQSTRGMLS TFSEKHEGYPSGSMVDFACDANGSPILAVSSLAVHTKDLLANSKCSLLVARDPEDRTD LVITLHGDAVAVSENDQAAVRTAYLAKHPNAFWVDFGDFQFMRIEPKVVRFVSGVATA LLGSGEFSKEEYQASKVDAIAQFSKPVASHMNKDHAEDTKVIVQHSTSIPVDYAYMLD LDSLGFNVKAGYQGNTFKLRIPFPRRAEDRKGCENPHSRYAPSCPVSSQLTTLLKETK EDPVFYLHLTTTEYRPT" gene complement(35546581..35555236) /locus_tag="TCM_025928" /note="dbxref CacaoGD:Thecc1EG025928" mRNA complement(join(35546581..35547286,35548152..35548248, 35548385..35548498,35548574..35548738,35549331..35549465, 35549682..35549758,35549861..35549975,35550053..35550146, 35550271..35550332,35550433..35550567,35550653..35550832, 35551128..35551184,35552080..35552128,35552259..35552407, 35552712..35552759,35554208..35554384,35555080..35555236)) /locus_tag="TCM_025928" /product="Calcium-dependent phospholipid-binding Copine family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s03010.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025929t1" /inference="similar to AA sequence:ricco:30128.m008689" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9576t3" CDS complement(join(35547189..35547286,35548152..35548248, 35548385..35548498,35548574..35548738,35549331..35549465, 35549682..35549758,35549861..35549975,35550053..35550146, 35550271..35550332,35550433..35550567,35550653..35550832, 35551128..35551184,35552080..35552128,35552259..35552407, 35552712..35552759,35554208..35554384,35555080..35555166)) /locus_tag="TCM_025928" /note="dbxref ricco:30128.m008689; paralog of Thecc1EG025929t1" /codon_start=1 /product="Calcium-dependent phospholipid-binding Copine family protein" /protein_id="EOY10601.1" /db_xref="TAIR:AT1G08860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q941L3" /translation="MSRYESIDKILKVSIKFYLTQLVDISLNQRARGEKEMGNCISGD VGGGKQAIGGVQGRPTANNNAGHNDAVDHFFRARGQNPLFTQIELSISASKLRDRDIT SKSDPMTILYVKKRDGTLEELGRTEVILNSLNPAWIEKINVAYQFEIVQHLVFRIYDV DTKFQGIPVKALKLNEQEFLGEATCVLSEIVTKRNRSLTLNLHSRNGPGGSRNLGTLT VHAEENFSSRMAVEMKLRCSQLDNKDMFSKSDPFLRISRLLESGNSVPICKTEVINNN LYPVWRPLYLSMQQFGSKDNPLLIECFDFNSNGDHALIGKLQKSVSELEELYKDRSGA NLVFPSSRGQEKVLKGQLFVDEFIEKVQFSFLDYISSGFELNFMVAIDFTASNGNPRN PDSLHYIDPSRRLNSYQQAIMEVGEVIQFYDSDRRFPAWGFGGRAYDGTVSHCFNLNG MNAHEVEGVEGIMAAYANALHNVTLAGPTLFGHVINTAAQIAGQTISNDITKYFVLLI ITDGVLTDMQETMEALVRASDLPLSILIVGVGDADFKQMEILDADNGHRLESSTGRLA TRDIVQFVPMREVYSCRISVVQALLEELPGQFLSYMRSRDIKPVNA" mobile_element complement(35559423..35562291) /note="source:CACAO_M_E58819_F24_scaffold_9 11276 14122" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(35562281..35567980) /locus_tag="TCM_025929" /note="dbxref CacaoGD:Thecc1EG025929" mRNA complement(join(35562281..35562720,35562909..35563005, 35563114..35563227,35563313..35563471,35563582..35563722, 35564041..35564117,35564224..35564338,35564430..35564523, 35564633..35564694,35564868..35565002,35565090..35565269, 35565460..35565516,35565635..35565683,35565789..35565937, 35566245..35566292,35566705..35566864,35567554..35567980)) /locus_tag="TCM_025929" /product="Calcium-dependent phospholipid-binding Copine family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s03010.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025928t1" /inference="similar to AA sequence:ricco:30128.m008689" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:PASA:2:TSA:puevd3b025076t1a2; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc3034t1" mRNA complement(join(35562281..35562728,35562909..35563005, 35563114..35563227,35563313..35563471,35563582..35563722, 35564041..35564117,35564224..35564338,35564430..35564523, 35564633..35564694,35564868..35565002,35565090..35565269, 35565460..35565516,35565635..35565683,35565789..35565937, 35566245..35566292,35566705..35566864,35567554..35567980)) /locus_tag="TCM_025929" /product="Calcium-dependent phospholipid-binding Copine family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s03010.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025928t1" /inference="similar to AA sequence:ricco:30128.m008689" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc3034t1" CDS complement(join(35562625..35562728,35562909..35563005, 35563114..35563227,35563313..35563471,35563582..35563722, 35564041..35564117,35564224..35564338,35564430..35564523, 35564633..35564694,35564868..35565002,35565090..35565269, 35565460..35565516,35565635..35565683,35565789..35565937, 35566245..35566292,35566705..35566851)) /locus_tag="TCM_025929" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30128.m008689; paralog of Thecc1EG025928t1" /codon_start=1 /product="Calcium-dependent phospholipid-binding Copine family protein isoform 1" /protein_id="EOY10602.1" /db_xref="TAIR:AT1G08860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I408" /translation="MGQCLSGDVSGGQQALGHMSMLEGNVGRNDAVDFFFRSRGQHSP STGIELSLSASKLSDRDITSKSDPMAILYAKRKDGSLKELGRTEVILNNLNPAWVEKI HLTYQFETVQSLVFHVYDVDTVYHNVPVKMLKLSDQDFLGEANCVLSEILTKRNQTVT LNLQSKHGHGGSRNLGMLTVHAEETVASRTIVEMVLRCSQLDNKDLFSKSDPFLRISK IAESVGCVPMYKTEVVNNDLNPVWKPLCLTMQHYGSKDNPLIFECFDFNSSGNHVLIG KIQKSVSELEKLYKEKSGANLVLSSRQGHDKVLKGQLFVDQFIEKPRFSFLDYISSGF QLNFMVAVDFTSSNGLPRNPTSLHYIDPLGRLNSYQQAIMEVGEVIQFYDSDKRFPAW GFGAKTFSNTSLSHCFNLDITNGYQEVEGVEGIMAAYASAIYNVTLSGPTVFGQVIDR AAQLASFSCDSTKYFVLLIITDGVLTDIQETKDAVVKTTDLPLSILIVGVGDADFKQM EILDADDGCPLVSSNGRVATRDIVQFVPMRDVHGGQISLVEALLQELPGQFLTYMQSR NIKPYGFVA" CDS complement(join(35562707..35562720,35562909..35563005, 35563114..35563227,35563313..35563471,35563582..35563722, 35564041..35564117,35564224..35564338,35564430..35564523, 35564633..35564694,35564868..35565002,35565090..35565269, 35565460..35565516,35565635..35565683,35565789..35565937, 35566245..35566292,35566705..35566851)) /locus_tag="TCM_025929" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30128.m008689; paralog of Thecc1EG025928t1" /codon_start=1 /product="Calcium-dependent phospholipid-binding Copine family protein isoform 2" /protein_id="EOY10603.1" /db_xref="TAIR:AT1G08860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I408" /translation="MGQCLSGDVSGGQQALGHMSMLEGNVGRNDAVDFFFRSRGQHSP STGIELSLSASKLSDRDITSKSDPMAILYAKRKDGSLKELGRTEVILNNLNPAWVEKI HLTYQFETVQSLVFHVYDVDTVYHNVPVKMLKLSDQDFLGEANCVLSEILTKRNQTVT LNLQSKHGHGGSRNLGMLTVHAEETVASRTIVEMVLRCSQLDNKDLFSKSDPFLRISK IAESVGCVPMYKTEVVNNDLNPVWKPLCLTMQHYGSKDNPLIFECFDFNSSGNHVLIG KIQKSVSELEKLYKEKSGANLVLSSRQGHDKVLKGQLFVDQFIEKPRFSFLDYISSGF QLNFMVAVDFTSSNGLPRNPTSLHYIDPLGRLNSYQQAIMEVGEVIQFYDSDKRFPAW GFGAKTFSNTSLSHCFNLDITNGYQEVEGVEGIMAAYASAIYNVTLSGPTVFGQVIDR AAQLASFSCDSTKYFVLLIITDGVLTDIQETKDAVVKTTDLPLSILIVGVGDADFKQM EILDADDGCPLVSSNGRVATRDIVQFVPMRDVHDFSC" gene complement(35569330..35573430) /locus_tag="TCM_025930" /note="dbxref CacaoGD:Thecc1EG025930" mRNA complement(join(35569330..35570542,35570840..35571741)) /locus_tag="TCM_025930" /product="DCD domain protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30128.m008688" /inference="similar to AA sequence:ricco:30128.m008688" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc990t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9593t1" mRNA complement(join(35569384..35570542,35570632..35570748, 35570840..35571689,35573089..35573430)) /locus_tag="TCM_025930" /product="DCD domain protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30128.m008688" /inference="similar to AA sequence:Phytozome:POPTR_0005s04420.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.49 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9593t1" CDS complement(join(35569673..35570542,35570840..35571649)) /locus_tag="TCM_025930" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30128.m008688" /codon_start=1 /product="DCD domain protein, putative isoform 2" /protein_id="EOY10605.1" /db_xref="TAIR:AT2G32910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9P4V0" /translation="MEQENNKNEADDNTAEDLAKSQSSEEKGPNLLKAKSDTAKSMAK NFLKTRKATGTSEVQRRKKRKKNKSLSEGSKETEEDAQKLNSREENQQNATTSTEHVE KGQQIRKNQGNTCASDSQEKRGKPNDNPKKRRREEKPGVSNKNRKNEERQKGKEKIKQ NEQKENHNNSEKNKKKEMRHGKEKKQENKKREKIDGVIFMCNAKTKPDCFRYRVMGVS TSKKDLVLGIRPGLKLFLYDYDLKLMYGIYKASSSGGMKLEPKAFGGAFPAQVRKLTE LFRPVAVHSTALPAISPSRAGGRIPVRHENREAHDRAREARPPSEREASARDPYTNAR TCAVLSHERDQQIGYGELVFTRREDIRHDLYLSEKEYRAYGLQGERRNLTLQHHVAPT SSSYRRDYGEQLLRQPDTVYGESVPMQRDIIRSDPPYLTEREYRTYDLGATQDMQSTV SPTTTTNTSVAAASTLDSFAMDSYYSRYYGVPLLDSYLPRPRGQANLIETDHLRRRES KEVDELYPTYDSNALAEYNQMHRYHQVVKPEASSTSVSSRYSFPGATLSYR" CDS complement(join(35569673..35570542,35570632..35570748, 35570840..35571649)) /locus_tag="TCM_025930" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="DCD domain protein, putative isoform 1" /protein_id="EOY10604.1" /db_xref="Phytozome:POPTR_0005s04420.1" /db_xref="TAIR:AT2G32910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9P4V0" /translation="MEQENNKNEADDNTAEDLAKSQSSEEKGPNLLKAKSDTAKSMAK NFLKTRKATGTSEVQRRKKRKKNKSLSEGSKETEEDAQKLNSREENQQNATTSTEHVE KGQQIRKNQGNTCASDSQEKRGKPNDNPKKRRREEKPGVSNKNRKNEERQKGKEKIKQ NEQKENHNNSEKNKKKEMRHGKEKKQENKKREKIDGVIFMCNAKTKPDCFRYRVMGVS TSKKDLVLGIRPGLKLFLYDYDLKLMYGIYKASSSGGMKLEPKAFGGAFPAQVRFSVQ ADCFPLAESIFKKAIKENYNEKRKFKTELTARQVRKLTELFRPVAVHSTALPAISPSR AGGRIPVRHENREAHDRAREARPPSEREASARDPYTNARTCAVLSHERDQQIGYGELV FTRREDIRHDLYLSEKEYRAYGLQGERRNLTLQHHVAPTSSSYRRDYGEQLLRQPDTV YGESVPMQRDIIRSDPPYLTEREYRTYDLGATQDMQSTVSPTTTTNTSVAAASTLDSF AMDSYYSRYYGVPLLDSYLPRPRGQANLIETDHLRRRESKEVDELYPTYDSNALAEYN QMHRYHQVVKPEASSTSVSSRYSFPGATLSYR" gene complement(35574362..35576649) /locus_tag="TCM_025931" /note="dbxref CacaoGD:Thecc1EG025931" mRNA complement(join(35574362..35575159,35576029..35576156, 35576398..35576649)) /locus_tag="TCM_025931" /product="Ribosomal L.8/L5e family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s03030.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s03030.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:PASA:2:TSA:puevd3b025078t1a3; alternateUTRof:Thecc1EG025931t3; inference alignment:Newbler:10:TSA:cgbaB_g00278t00001" mRNA complement(join(35574362..35575159,35576029..35576156, 35576271..35576649)) /locus_tag="TCM_025931" /product="Ribosomal L.8/L5e family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s03030.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s03030.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:PASA:2:TSA:puevd3b025078t1a4; inference alignment:Newbler:10:TSA:cgbaB_g00278t00001" mRNA complement(join(35574362..35575159,35575489..35575603, 35576029..35576156,35576271..35576649)) /locus_tag="TCM_025931" /product="Ribosomal L.8/L5e family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s03030.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s03030.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:PASA:2:TSA:puevd3b025078t1a2; inference alignment:Newbler:10:TSA:cgbaB_g00278t00001" mRNA complement(join(35574410..35575169,35575486..35575603, 35576029..35576054)) /locus_tag="TCM_025931" /product="Ribosomal L.8/L5e family protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s03030.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s03030.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc154t6; inference alignment:Newbler:10:TSA:cgbaB_g00278t00001" mRNA complement(join(35574492..35575159,35576029..35576240)) /locus_tag="TCM_025931" /product="Ribosomal L.8/L5e family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s03030.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s03030.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00278t00001" CDS complement(join(35574707..35575159,35576029..35576187)) /locus_tag="TCM_025931" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Ribosomal L.8/L5e family protein isoform 1" /protein_id="EOY10606.1" /db_xref="Phytozome:POPTR_0013s03030.1" /db_xref="TAIR:AT1G08845.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HXR7" /translation="MFSLSFFFLSGVVCKMLRQAIGKVLSERVVTNSGDKLLLPCLYL PTSSFHAGQVHCAPRSFFGVEDFLDDDNSRPYTYKKEKKSKNPSKHVSFKQRTVAYME PFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILAD RAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDIKVYLD" CDS complement(join(35574707..35575159,35576029..35576142)) /locus_tag="TCM_025931" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Ribosomal L.8/L5e family protein isoform 3" /protein_id="EOY10608.1" /db_xref="Phytozome:POPTR_0013s03030.1" /db_xref="TAIR:AT1G08845.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HXR7" /translation="MLRQAIGKVLSERVVTNSGDKLLLPCLYLPTSSFHAGQVHCAPR SFFGVEDFLDDDNSRPYTYKKEKKSKNPSKHVSFKQRTVAYMEPFTLDVFISKRFVSA SLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILADRAREADVYTASYTPR ERDKFEGKIRAVVQSLIDNGIDIKVYLD" CDS complement(join(35574707..35575159,35576029..35576142)) /locus_tag="TCM_025931" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Ribosomal L.8/L5e family protein isoform 3" /protein_id="EOY10609.1" /db_xref="Phytozome:POPTR_0013s03030.1" /db_xref="TAIR:AT1G08845.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HXR7" /translation="MLRQAIGKVLSERVVTNSGDKLLLPCLYLPTSSFHAGQVHCAPR SFFGVEDFLDDDNSRPYTYKKEKKSKNPSKHVSFKQRTVAYMEPFTLDVFISKRFVSA SLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILADRAREADVYTASYTPR ERDKFEGKIRAVVQSLIDNGIDIKVYLD" CDS complement(join(35574707..35575159,35575489..35575603, 35576029..35576039)) /locus_tag="TCM_025931" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Ribosomal L.8/L5e family protein isoform 2" /protein_id="EOY10607.1" /db_xref="Phytozome:POPTR_0013s03030.1" /db_xref="TAIR:AT1G08845.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HXR7" /translation="MLDSKTFNMARMEGSKYGRDEKRTDERRHLHKLFVHLHLFDLVH CAPRSFFGVEDFLDDDNSRPYTYKKEKKSKNPSKHVSFKQRTVAYMEPFTLDVFISKR FVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILADRAREADVYTAS YTPRERDKFEGKIRAVVQSLIDNGIDIKVYLD" CDS complement(join(35574707..35575169,35575486..35575565)) /locus_tag="TCM_025931" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Ribosomal L.8/L5e family protein isoform 5" /protein_id="EOY10610.1" /db_xref="Phytozome:POPTR_0013s03030.1" /db_xref="TAIR:AT1G08845.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HXR7" /translation="MVEMKREQMREGIYISCSCISIYLIWYLVQVHCAPRSFFGVEDF LDDDNSRPYTYKKEKKSKNPSKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTS KQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILADRAREADVYTASYTPRERDKFEGK IRAVVQSLIDNGIDIKVYLD" gene complement(35577210..35583322) /locus_tag="TCM_025932" /note="dbxref CacaoGD:Thecc1EG025932" mRNA complement(join(35577210..35578418,35578776..35578853, 35579037..35581633,35581733..35581890,35582808..35583322)) /locus_tag="TCM_025932" /product="DNAJ heat shock N-terminal domain-containing protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s03040.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s03040.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc386t4" CDS complement(join(35577922..35578418,35578776..35578853, 35579037..35581551)) /locus_tag="TCM_025932" /codon_start=1 /product="DNAJ heat shock N-terminal domain-containing protein, putative" /protein_id="EOY10611.1" /db_xref="Phytozome:POPTR_0013s03040.1" /db_xref="TAIR:AT5G27240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I833" /translation="MECNKEEAVRAKGIAEQKMQNGDFEGAKKFALKAQKLFPELENI SQFLTVCNVHCCAKCKLYGSEMDWYGILQIEQSADEISIKKQYRKLALLLHPDKNKFA GAEAAFKLIGEANRILTDQMRRSQYDMKCRISARTAPKPTTHQSNRASSFNSQYGSTN NYQNGSSKFTASYSYQQAQHLTFWTFCSACGIKYQYHKDFVNRLLHCPTCGTSFIARD LGPQGLSRGYPGNQFSNQKEVPNQGPCKVSSQCNGGKPSGVHFPHGYAGSDPISKARS SVPVGDSKKQEKVGVQMHQPHKGFSAEQKVDGFSNVRDGKKGVEIPKPNAAKTKGSGA SRNAKKKRGRKSIEESDESCETSHGNEVEDMVSHEDCGNNTRMNSKVNGGHRPRRSSR EKRHVSYEEKLSDDDDFVSSPYKRSKVTTTPNANDEKVDDSVSKKDNSVGPTAAVDVC QKEVKQKASAPPEGTIPNKKRKTGESEGKEEEPVVFDNNNEVSQVDGGSGTSENVNPC PQVLEYPDPDFSDFEKHRAENCFAVNQVWAIYDTLDGMPRFYARVKKVFTPGFKLRIT WLEPNPDEENQQNWVDLDLPVSCGKYCNGSSEGCVDRLMFSHRIDPIKSFGKCSFLVY PQKGETWALYRDWDVKWASEPEKHKPPYQYDFVEVLTDFDEEIGIGVAHLGKVKGFVS IFRQTERDGVISFQVSPRELYRFSHRIPSCRMTGKEREGVPLGSFELDPASLPTNLDE LVDPGDMKLGNHYQDNEAKFSCPKFPQNQAKATIDSEENLTPMKNDKSDIEREASPFR RSTRASSRMRKDHGKEDDSIKDIHECNITQHKESCTSGDTGDQKINTPNKCKKNDLTT DCLKPRTSSRDLSRKGSQVSNTQGSASFSPPLGDVHLSERDGSTIGVTKSSSVSTRVS SAHRTSKSECYNFKREKFEDKFEVDQIWALYNRDGMPEDYAQVKKIESTPDFRLHVTL LEMCSRPKDLELSPSCGIFKVKGSQTKVVSCDVVSHRLRAEPIGKNRYKIYTTQEEV" mobile_element complement(35583271..35583366) /note="source:CACAO_Again_on_E207_scaffold_9 334 428" /mobile_element_type="transposon:TIR/hAT" gene complement(35583512..35589760) /locus_tag="TCM_025933" /note="dbxref CacaoGD:Thecc1EG025933" mRNA complement(join(35583512..35584101,35584222..35584384, 35585260..35585408,35585836..35585979,35586083..35586191, 35586350..35586413,35586920..35587266,35587566..35587784, 35587909..35588014,35588554..35588786,35589564..35589760)) /locus_tag="TCM_025933" /product="Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s03070.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021117t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s03070.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05184t00001" mRNA complement(join(35583684..35584101,35584222..35584384, 35585260..35585408,35585836..35585979,35586083..35586191, 35586350..35586416,35586920..35587266,35587566..35587784, 35587909..35588014,35588554..35588786,35589564..35589711)) /locus_tag="TCM_025933" /product="Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s03070.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021117t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s03070.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9627t1; inference alignment:Newbler:10:TSA:cgbaB_g05184t00001" CDS complement(join(35584058..35584101,35584222..35584384, 35585260..35585408,35585836..35585979,35586083..35586191, 35586350..35586413,35586920..35587266,35587566..35587784, 35587909..35588014,35588554..35588786,35589564..35589584)) /locus_tag="TCM_025933" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG021117t1" /codon_start=1 /product="Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase isoform 1" /protein_id="EOY10612.1" /db_xref="Phytozome:POPTR_0013s03070.1" /db_xref="TAIR:AT3G06350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SQT8" /translation="MAFESSTLPITDFQIGDGAQRNSTLICVPIMAESVEEMLVKMRK AKELGGDLVEIRVDFLKNFIPKQDLDILIKQAPLPTLVTFRPRWEGGRYDGDESKRQE ALRLAMELGADYIDIELKVAHDFFSSLPRDRPENVKIIVSSHNYESTPSVEELGDLVA RIQATGADIVKIATTALDIIDNARLFQVLVHSQVPMIGLVMGERGLMSRILAAKFGGF LTFGTLEEGVISAPGQPTVKELLDLYNMRHIGPDTKVHGVIGNPIDHSKSPHLYNAAF KSTGFNGIYLPLLVDNVSNFITTYSSPDFAGYSYTIPHKEAGLKCCDEVDPIAESIGA ISCMIRRPTDGKLFGYNIDYLGAIAAIEEGLRATSGATPASGSPLAGQIFVVIGAGGA GKAIAYGGYEKGARVVVANCTYDKAKELASKVGGQAITLSELNEFHPEEGMILVNTTS VGMKPKIDETPVSKEALKHYSLVFDAVCTPKLTRLLREAQESGATIVYGAEMFINQAF VQFEMFTGLPAPKRLIRDVLARNT" CDS complement(join(35584058..35584101,35584222..35584384, 35585260..35585408,35585836..35585979,35586083..35586191, 35586350..35586416,35586920..35587266,35587566..35587784, 35587909..35588014,35588554..35588786,35589564..35589584)) /locus_tag="TCM_025933" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG021117t1" /codon_start=1 /product="Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase isoform 3" /protein_id="EOY10614.1" /db_xref="Phytozome:POPTR_0013s03070.1" /db_xref="TAIR:AT3G06350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SQT8" /translation="MAFESSTLPITDFQIGDGAQRNSTLICVPIMAESVEEMLVKMRK AKELGGDLVEIRVDFLKNFIPKQDLDILIKQAPLPTLVTFRPRWEGGRYDGDESKRQE ALRLAMELGADYIDIELKVAHDFFSSLPRDRPENVKIIVSSHNYESTPSVEELGDLVA RIQATGADIVKIATTALDIIDNARLFQVLVHSQVPMIGLVMGERGLMSRILAAKFGGF LTFGTLEEGVISAPGQPTVKELLDLYNMRHIGPDTKVHGVIGNPIDHSKSPHLYNAAF KSTGFNGIYLPLLVDNVSNFITTYSSPDFAGYSSYTIPHKEAGLKCCDEVDPIAESIG AISCMIRRPTDGKLFGYNIDYLGAIAAIEEGLRATSGATPASGSPLAGQIFVVIGAGG AGKAIAYGGYEKGARVVVANCTYDKAKELASKVGGQAITLSELNEFHPEEGMILVNTT SVGMKPKIDETPVSKEALKHYSLVFDAVCTPKLTRLLREAQESGATIVYGAEMFINQA FVQFEMFTGLPAPKRLIRDVLARNT" mRNA complement(join(35584073..35584380,35585260..35585408, 35585836..35585979,35586083..35586191,35586350..35586413, 35586920..35587266,35587566..35587784,35587909..35588014, 35588554..35588786,35589564..35589706)) /locus_tag="TCM_025933" /product="Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s03070.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021117t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s03070.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc818t1; inference alignment:Newbler:10:TSA:cgbaB_g05184t00001" mRNA complement(join(35584354..35584384,35585260..35585408, 35585836..35586007,35586083..35586191,35586350..35586413, 35586920..35587266,35587566..35587784,35587909..35588014, 35588554..35588786,35589564..35589706)) /locus_tag="TCM_025933" /product="Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s03070.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021117t5" /inference="similar to AA sequence:ricco:30128.m008685" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc818t2; inference alignment:Newbler:10:TSA:cgbaB_g05184t00001" CDS complement(join(35584375..35584380,35585260..35585408, 35585836..35585979,35586083..35586191,35586350..35586413, 35586920..35587266,35587566..35587784,35587909..35588014, 35588554..35588786,35589564..35589584)) /locus_tag="TCM_025933" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG021117t1" /codon_start=1 /product="Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase isoform 2" /protein_id="EOY10613.1" /db_xref="Phytozome:POPTR_0013s03070.1" /db_xref="TAIR:AT3G06350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SQT8" /translation="MAFESSTLPITDFQIGDGAQRNSTLICVPIMAESVEEMLVKMRK AKELGGDLVEIRVDFLKNFIPKQDLDILIKQAPLPTLVTFRPRWEGGRYDGDESKRQE ALRLAMELGADYIDIELKVAHDFFSSLPRDRPENVKIIVSSHNYESTPSVEELGDLVA RIQATGADIVKIATTALDIIDNARLFQVLVHSQVPMIGLVMGERGLMSRILAAKFGGF LTFGTLEEGVISAPGQPTVKELLDLYNMRHIGPDTKVHGVIGNPIDHSKSPHLYNAAF KSTGFNGIYLPLLVDNVSNFITTYSSPDFAGYSYTIPHKEAGLKCCDEVDPIAESIGA ISCMIRRPTDGKLFGYNIDYLGAIAAIEEGLRATSGATPASGSPLAGQIFVVIGAGGA GKAIAYGGYEKGARVVVANCTYDKAKELASKVGGQAITLSELNEFHPEEGMILVNTTS VGMKPKIDETPVSKL" CDS complement(join(35585874..35586007,35586083..35586191, 35586350..35586413,35586920..35587266,35587566..35587784, 35587909..35588014,35588554..35588786,35589564..35589584)) /locus_tag="TCM_025933" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30128.m008685; paralog of Thecc1EG021117t5" /codon_start=1 /product="Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase isoform 4" /protein_id="EOY10615.1" /db_xref="TAIR:AT3G06350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SQT8" /translation="MAFESSTLPITDFQIGDGAQRNSTLICVPIMAESVEEMLVKMRK AKELGGDLVEIRVDFLKNFIPKQDLDILIKQAPLPTLVTFRPRWEGGRYDGDESKRQE ALRLAMELGADYIDIELKVAHDFFSSLPRDRPENVKIIVSSHNYESTPSVEELGDLVA RIQATGADIVKIATTALDIIDNARLFQVLVHSQVPMIGLVMGERGLMSRILAAKFGGF LTFGTLEEGVISAPGQPTVKELLDLYNMRHIGPDTKVHGVIGNPIDHSKSPHLYNAAF KSTGFNGIYLPLLVDNVSNFITTYSSPDFAGYSYTIPHKEAGLKCCDEVDPIAESIGA ISCMIRRPTDGKLFGYNIDYLGAIAAIEEGLRDLPFCPLLCSNQWCNTCVWFPFGWSN ICCNWSWWCWKGNCLWRI" mobile_element complement(35589814..35590514) /note="source:INTACT687_F13_scaffold_3-int 1297 2052" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 35591309..35592249 /locus_tag="TCM_025934" /note="dbxref CacaoGD:Thecc1EG025934" mRNA 35591309..35592249 /locus_tag="TCM_025934" /product="Wound-responsive protein-related" /inference="alignment:exonerate- protein:2:Phytozome:Sb05g012453.1" /note="quality class is strong, express is none, homology is ortholog strong, intron is none, protein is complete" CDS 35591441..35591584 /locus_tag="TCM_025934" /codon_start=1 /product="Wound-responsive protein-related" /protein_id="EOY10616.1" /translation="MIYDVNSPLFRSFLSQNGNSTDKRKMEAQKCKEQRPKASENKSV MTK" mobile_element complement(35591609..35592105) /note="source:scaffold_4_CACTA_0505 10639 11080" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(35592159..35592328) /note="source:scaffold_8_CACTA_0858 14539 14698" /mobile_element_type="transposon:TIR/CACTA" gene 35592647..35594445 /locus_tag="TCM_025935" /note="dbxref CacaoGD:Thecc1EG025935" mRNA join(35592647..35593518,35594375..35594445) /locus_tag="TCM_025935" /product="Surfeit locus protein 5 subunit 22 of Mediator complex" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036692001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036681t1" /inference="similar to AA sequence:Phytozome:GSVIVT01036692001" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1155t3" CDS 35593031..35593477 /locus_tag="TCM_025935" /note="paralog of Thecc1EG036681t1" /codon_start=1 /product="Surfeit locus protein 5 subunit 22 of Mediator complex" /protein_id="EOY10617.1" /db_xref="Phytozome:GSVIVT01036692001" /db_xref="TAIR:AT1G07950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T100" /translation="MNKGTGVGTGPTAAAAAAAAQKQKTMMQRVETDIVNIVDNFTQL VNVARVNDPPVRNSQEAFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVE QRSVEFDQQAEKTDRMLARIGEEAAASLKELESHHYSSARRTAESP" gene complement(35594732..35599606) /locus_tag="TCM_025936" /note="dbxref CacaoGD:Thecc1EG025936" mRNA complement(join(35594732..35595048,35595158..35595310, 35595454..35595602,35595689..35595838,35595923..35596028, 35596119..35596182,35596280..35596623,35596723..35596929, 35597117..35597222,35598472..35598705,35599019..35599606)) /locus_tag="TCM_025936" /product="Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017822001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021117t1" /inference="similar to AA sequence:ricco:30128.m008684" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9600t1" CDS complement(join(35595224..35595310,35595454..35595602, 35595689..35595838,35595923..35596028,35596119..35596182, 35596280..35596623,35596723..35596929,35597117..35597222, 35598472..35598686)) /locus_tag="TCM_025936" /note="dbxref ricco:30128.m008684; paralog of Thecc1EG021117t1" /codon_start=1 /product="Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase" /protein_id="EOY10618.1" /db_xref="TAIR:AT3G06350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SQT8" /translation="MSHSRVQSRPTLLCTPITGTTVGQMLTEMRLAKEIGSDVVEIRL DCLRNFSPRQDLEILIKQSPLSTLATYRPIWEGGQYEGDETKRQDALRLAMELGANYI DIELEVAHDFISSIYGKKPDNIKVIVSSHNFHNTPSTEAIGNLVARIQATGADIAKIA ATALDITDCARICQITIPTIGVAMGEKGLVSQLLSPKFGGYLTYGALETGSIAPGQPT LKNLLDLYNFRLITPDTKVYGIIGKPVGHSKSPLIFNAAFKSVGLNAVYVHFLVDDVE MFFNTYSSPDFAGCSCTIPHKEVALKCMDEIDPIAKKIGAINNIVRQPDGGLIAFNTN YIGAISAIEDGLRGLNVVTVTSSAGSPLAGKLFVVLGAGGAGKSLAYGAAQKGARIII ANRTFKRAKELANKDGGQAMPLAEVENFYPEEGMVLANTTSVVMKPNIDATPIPKHAL KHCCLVFDAIYTPGFYKKRKTLGRL" mobile_element complement(35597306..35598392) /note="source:CACAO_on_S_E46_scaffold_2 429 1435" /mobile_element_type="transposon:TIR/Mutator" gene complement(35599793..35605154) /locus_tag="TCM_025937" /note="dbxref CacaoGD:Thecc1EG025937" mRNA complement(join(35599793..35600418,35600761..35600923, 35601028..35601507,35601630..35601738,35602382..35602445, 35602939..35603279,35603382..35603600,35604196..35604301, 35604629..35605154)) /locus_tag="TCM_025937" /product="Dehydroquinate dehydratase/ shikimate dehydrogenase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s04490.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021117t3" /inference="similar to AA sequence:Phytozome:POPTR_0005s04490.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:PASA:2:TSA:puevd3b025083t1a2; inference alignment:Newbler:10:TSA:cgbaL_g00427t00002" mRNA complement(join(35599793..35600418,35600761..35600923, 35601028..35601179,35601358..35601507,35601630..35601738, 35602382..35602445,35602939..35603279,35603382..35603600, 35604196..35604301,35604629..35604899)) /locus_tag="TCM_025937" /product="Dehydroquinate dehydratase/ shikimate dehydrogenase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s04490.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021117t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s04490.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9653t2; alternateUTRof:Thecc1EG025937t1; inference alignment:Newbler:10:TSA:cgbaL_g00427t00002" mRNA complement(join(35599848..35600221,35600350..35600418, 35600761..35600923,35601028..35601179,35601358..35601507, 35601630..35601738,35602382..35602445,35602939..35603279, 35603382..35603600,35604196..35604301,35604629..35605154)) /locus_tag="TCM_025937" /product="Dehydroquinate dehydratase/ shikimate dehydrogenase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s04490.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021117t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s04490.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00427t00002" CDS complement(join(35600375..35600418,35600761..35600923, 35601028..35601179,35601358..35601507,35601630..35601738, 35602382..35602445,35602939..35603279,35603382..35603600, 35604196..35604301,35604629..35604843)) /locus_tag="TCM_025937" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG021117t1" /codon_start=1 /product="Dehydroquinate dehydratase/ shikimate dehydrogenase isoform 1" /protein_id="EOY10619.1" /db_xref="Phytozome:POPTR_0005s04490.1" /db_xref="TAIR:AT3G06350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I9X4" /translation="MGGTGMLNNSTMICAPLMAQSVEQMVKDMHQAKAEGAQLVEIRL DYIKNFQPHQDIQIILKNKPLPVIIVYRPKWEGGQYEGDENSRLEALCLAREMGADYI DFELKVASDLIREQKMKNDNATKVIVSQNIDGMTPKDEELSNLAASIQATGADIIKVV VNVADITEIAKIFHLLSHYQVPIIAYSVGERGLISQLLCPKFGGFLAYGSIVGHSLPG MPSLYSLRHTYKLDYLNSETKVFGLVSKPVGHSKGPLLHNPTLRHENFNGVYVPMFVD NLKEFFSIYSSPDFAGFSVGFPYKEAVVEFCDEVHPLAESIGAVNTIVRRPCDGKLIG YNTDCEAAITAIEDALKEKRCSSNEASSGTPLSGKLFVLVGAGGAGRALAFGAKSRGS RIVIFDIDFERAKSLACAVSGEARVFEEVVNFQPEKGAILANATPLGMHPKTDQRIPV AESTLGDYELVFDAVYTPRKTRLLKDAEAAGAIIVGGVEMFLGQAIGQFNLFTGQEAP KKLMREIIMAKF" CDS complement(join(35600375..35600418,35600761..35600923, 35601028..35601179,35601358..35601507,35601630..35601738, 35602382..35602445,35602939..35603279,35603382..35603600, 35604196..35604301,35604629..35604843)) /locus_tag="TCM_025937" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG021117t1" /codon_start=1 /product="Dehydroquinate dehydratase/ shikimate dehydrogenase isoform 1" /protein_id="EOY10620.1" /db_xref="Phytozome:POPTR_0005s04490.1" /db_xref="TAIR:AT3G06350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I9X4" /translation="MGGTGMLNNSTMICAPLMAQSVEQMVKDMHQAKAEGAQLVEIRL DYIKNFQPHQDIQIILKNKPLPVIIVYRPKWEGGQYEGDENSRLEALCLAREMGADYI DFELKVASDLIREQKMKNDNATKVIVSQNIDGMTPKDEELSNLAASIQATGADIIKVV VNVADITEIAKIFHLLSHYQVPIIAYSVGERGLISQLLCPKFGGFLAYGSIVGHSLPG MPSLYSLRHTYKLDYLNSETKVFGLVSKPVGHSKGPLLHNPTLRHENFNGVYVPMFVD NLKEFFSIYSSPDFAGFSVGFPYKEAVVEFCDEVHPLAESIGAVNTIVRRPCDGKLIG YNTDCEAAITAIEDALKEKRCSSNEASSGTPLSGKLFVLVGAGGAGRALAFGAKSRGS RIVIFDIDFERAKSLACAVSGEARVFEEVVNFQPEKGAILANATPLGMHPKTDQRIPV AESTLGDYELVFDAVYTPRKTRLLKDAEAAGAIIVGGVEMFLGQAIGQFNLFTGQEAP KKLMREIIMAKF" mRNA complement(join(35600391..35600418,35600761..35600873, 35601028..35601179,35601358..35601507,35601630..35601738, 35602382..35602445,35602939..35603279,35603382..35603600, 35604196..35604301,35604629..35604830)) /locus_tag="TCM_025937" /product="Dehydroquinate dehydratase/ shikimate dehydrogenase isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s04490.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021117t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s04490.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1449t2_C2; inference alignment:Newbler:10:TSA:cgbaL_g00427t00002" CDS complement(join(35600847..35600873,35601028..35601179, 35601358..35601507,35601630..35601738,35602382..35602445, 35602939..35603279,35603382..35603600,35604196..35604301, 35604629..35604828)) /locus_tag="TCM_025937" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG021117t1" /codon_start=1 /product="Dehydroquinate dehydratase/ shikimate dehydrogenase isoform 4" /protein_id="EOY10622.1" /db_xref="Phytozome:POPTR_0005s04490.1" /db_xref="TAIR:AT3G06350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I9X4" /translation="MLNNSTMICAPLMAQSVEQMVKDMHQAKAEGAQLVEIRLDYIKN FQPHQDIQIILKNKPLPVIIVYRPKWEGGQYEGDENSRLEALCLAREMGADYIDFELK VASDLIREQKMKNDNATKVIVSQNIDGMTPKDEELSNLAASIQATGADIIKVVVNVAD ITEIAKIFHLLSHYQVPIIAYSVGERGLISQLLCPKFGGFLAYGSIVGHSLPGMPSLY SLRHTYKLDYLNSETKVFGLVSKPVGHSKGPLLHNPTLRHENFNGVYVPMFVDNLKEF FSIYSSPDFAGFSVGFPYKEAVVEFCDEVHPLAESIGAVNTIVRRPCDGKLIGYNTDC EAAITAIEDALKEKRCSSNEASSGTPLSGKLFVLVGAGGAGRALAFGAKSRGSRIVIF DIDFERAKSLACAVSGEARVFEEVVNFQPEKGAILANATPLGMHPKTDQRIPVAEKNK TFKGC" mRNA complement(join(35600914..35601179,35601358..35601507, 35601630..35601738,35602382..35602445,35602939..35603279, 35603382..35603600,35604196..35604301,35604629..35605142)) /locus_tag="TCM_025937" /product="Dehydroquinate dehydratase/ shikimate dehydrogenase isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s04490.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021117t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s04490.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1437t5; inference alignment:Newbler:10:TSA:cgbaL_g00427t00002" CDS complement(join(35600998..35601179,35601358..35601507, 35601630..35601738,35602382..35602445,35602939..35603279, 35603382..35603600,35604196..35604301,35604629..35604843)) /locus_tag="TCM_025937" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG021117t1" /codon_start=1 /product="Dehydroquinate dehydratase/ shikimate dehydrogenase isoform 5" /protein_id="EOY10623.1" /db_xref="Phytozome:POPTR_0005s04490.1" /db_xref="TAIR:AT3G06350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I9X4" /translation="MGGTGMLNNSTMICAPLMAQSVEQMVKDMHQAKAEGAQLVEIRL DYIKNFQPHQDIQIILKNKPLPVIIVYRPKWEGGQYEGDENSRLEALCLAREMGADYI DFELKVASDLIREQKMKNDNATKVIVSQNIDGMTPKDEELSNLAASIQATGADIIKVV VNVADITEIAKIFHLLSHYQVPIIAYSVGERGLISQLLCPKFGGFLAYGSIVGHSLPG MPSLYSLRHTYKLDYLNSETKVFGLVSKPVGHSKGPLLHNPTLRHENFNGVYVPMFVD NLKEFFSIYSSPDFAGFSVGFPYKEAVVEFCDEVHPLAESIGAVNTIVRRPCDGKLIG YNTDCEAAITAIEDALKEKRCSSNEASSGTPLSGKLFVLVGAGGAGRALAFGAKSRGS RIVIFDIDFERAKSLACAVSGEARVFEEVVNFQPEKGAILANATPLGMHPKTDQRIPV AEVALLPALLE" CDS complement(join(35601299..35601507,35601630..35601738, 35602382..35602445,35602939..35603279,35603382..35603600, 35604196..35604301,35604629..35604843)) /locus_tag="TCM_025937" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG021117t3" /codon_start=1 /product="Dehydroquinate dehydratase/ shikimate dehydrogenase isoform 3" /protein_id="EOY10621.1" /db_xref="Phytozome:POPTR_0005s04490.1" /db_xref="TAIR:AT3G06350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I9X4" /translation="MGGTGMLNNSTMICAPLMAQSVEQMVKDMHQAKAEGAQLVEIRL DYIKNFQPHQDIQIILKNKPLPVIIVYRPKWEGGQYEGDENSRLEALCLAREMGADYI DFELKVASDLIREQKMKNDNATKVIVSQNIDGMTPKDEELSNLAASIQATGADIIKVV VNVADITEIAKIFHLLSHYQVPIIAYSVGERGLISQLLCPKFGGFLAYGSIVGHSLPG MPSLYSLRHTYKLDYLNSETKVFGLVSKPVGHSKGPLLHNPTLRHENFNGVYVPMFVD NLKEFFSIYSSPDFAGFSVGFPYKEAVVEFCDEVHPLAESIGAVNTIVRRPCDGKLIG YNTDCEAAITAIEDALKEKRCSSNEASSGTPLSGKLFVLVGAGGAGRALAFGAKSRGS RIVIFDIDFGMSFAMLNGKCMVFPSMLI" mobile_element complement(35605657..35606000) /note="source:scaffold_8_CACTA_0855 1943 2194" /mobile_element_type="transposon:TIR/CACTA" gene complement(35606155..35606669) /locus_tag="TCM_025938" /note="dbxref CacaoGD:Thecc1EG025938" mRNA complement(35606155..35606669) /locus_tag="TCM_025938" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.99 coverage" CDS complement(35606265..35606510) /locus_tag="TCM_025938" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10624.1" /translation="MKRSNSKQLQQQDSGQKDGATTSAPAVSSPVCPAPAAPTTVADP SSTTTTSSPAMIPTTQPQEEEHRSKRPRSASFLSNAL" gene 35608817..35609210 /locus_tag="TCM_025940" /note="dbxref CacaoGD:Thecc1EG025940" mRNA 35608817..35609210 /locus_tag="TCM_025940" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc3424t1" CDS 35608874..35609158 /locus_tag="TCM_025940" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10625.1" /translation="MTLTSSFAILSFSNDSSTLFSFNPISTSFFLTSSSCFRTNFTTK LNSLYSSSRCSSNSLRRCSKPFSPSSNSSQRFWKLFSFNPNCSCFNSSSL" gene complement(35609934..35619606) /locus_tag="TCM_025941" /note="dbxref CacaoGD:Thecc1EG025941" mRNA complement(join(35609934..35611129,35611232..35611398, 35613459..35614109,35614378..35614870,35614974..35615140, 35616896..35617522,35617862..35618455,35618673..35619606)) /locus_tag="TCM_025941" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021974001" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9611t2" CDS complement(join(35610662..35611129,35611232..35611398, 35613459..35614109,35614378..35614870,35614974..35615140, 35616896..35617522,35617862..35618455,35618673..35619471)) /locus_tag="TCM_025941" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10626.1" /translation="MCSSDDISADLILLQSQSKSLVNTLEKLQGGSSLVSSLYLQCQE LQELSKSIQRSIQTRFHELQFKENEIENRLKELEFREKELCKLSKLKLDDRLIGKGSS LPDLKFIVSTDGERLLMFLNEHENEHEKLADEVYNVLKVSNNPGKLVWQAVRGVFLEK GNVGVERNVERRSCLVLLEGLMRVRPESKKYVKKAAAFVAREWKLKLGMEGEDDREIL LFLMLVGAYGLLDQFKSKEIRSLFERVAQYKEASLLGRILGFVEKAAPETCNLHSQVK MEQLGEVSIVTSEAIDDTVINHSCSSSAHLRFIANTNADRLLMFLNEHENDEKIGDDV YNALKMSVNPAKLVLDVVKAGISEKANVGVESGVVKNSCVVLLDQLMRLRPEVSQKLR KKALKLAQQWKGNIKTQGNYDEEVLVFLMLVGAYGLTSEFNFKEIESLFESVSQHKQA PILSRILGFTDQTLVKGIYHSQLKIEQSDAENIQLDSILPYEAKLEQYNATSSTSCWP ELVSFSISMDARGLISFLSEHVEGHNLMQCEISDALLLASDPAKLVLDALSSFYRSKS GDGFKGAALSNVRKSCILLLEQLMTCSVQIGRHVNEEALKLAVEWKERMEQKYPHGVM AYGFLQFIITYSLTSAYDVDELLRLLVTASEYRQSPDLCLALGLADKISILIETLIKS NLQLEAIAYICAFGLADKFPPAHLLNAHLKYSKMRIYKKAKKSNVKQNQTIDKEIAIM RKVIRCIADHKLESLYPPEDLEKYIVHLERQKEQGNETARREKQKVDRKKTLSVPSTK KPQQECGFKSPFMNMPAEATPSASASAGCTLHLRPSPLEQPVSLIADQAAPCSLWDST IFSADTNSFNWQHGCAIASNGSLEQFTSTGASDRAAPESSVHHAQLIDQSQSKEFQLD GLVPSEATYEHYNTYSSTSCGFDLQSYITRMDARGLILFLCEHVEDHGLMHCEISDAL QLAPDPAKLVLDAVSTFHYSKSGNAPKSKKKSEDGFHSGALCKVRKSCILLLEQLRTF PFQIEPHVNEEVLKLAVDWKGRTLKHRKGVMAYGFLQLIVTYCLMSAYDADELLGLLV IASDYRQSPDLCLALGLADKIRVLIETLINKNQRLEAIAYICAFDLVDKFSPAHMLKV HLEYARESLYQKAKKSHWKWHQIIDHEIALVRKVIGCIADHKLESLYPPEDLEEYIIQ FERQKVERYIAARKDKQKTGRKQTPQVPSANSKPQQESGAKLPSTNVSAEATPSTSAG AGSTTKLSPLQLLESFFADQAVPHGLWESTTFSANTNLLSGKQHADTAMIANNGSSDS D" gene complement(35620427..35626280) /locus_tag="TCM_025943" /note="dbxref CacaoGD:Thecc1EG025943" mRNA complement(join(35620427..35621501,35621622..35621723, 35622532..35623104,35623987..35626280)) /locus_tag="TCM_025943" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:TAIR:AT5G27220.1" /inference="similar to AA sequence:Phytozome:POPTR_0005s04570.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:PASA:2:TSA:puevd3b025088t1a2; weak similarity to Frigida-like protein; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9621t2" mRNA complement(join(35620427..35621501,35621622..35621797, 35622532..35623104,35623987..35626280)) /locus_tag="TCM_025943" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT5G27220.1" /inference="similar to AA sequence:Phytozome:POPTR_0005s04570.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; weak similarity to Frigida-like protein; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9621t2" CDS complement(join(35620950..35621501,35621622..35621797, 35622532..35623104,35623987..35625826)) /locus_tag="TCM_025943" /note="encoded by transcript variant 1; alternatively spliced; weak similarity to Frigida-like protein" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY10627.1" /db_xref="Phytozome:POPTR_0005s04570.1" /db_xref="TAIR:AT5G27220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MZL9" /translation="MEDIKREIKLGELKRESLRKSLEQARDQASSILLFTLQWKDLEK HFDLIQQNIEKRVEVVELQEKELETEKRALKERQEVICLKENELSLLNEKIEECNRER KLKHTEANSTQKLLEECSLQFTLKEEDLDSVRKLVEGCSKELSLKKEELCSVNKLMSE CLEKLEGKEKQLGLVEEQIEKSSKELGVTEGKLDLVQSLVEECEGKLESKERELGLVT RRVDECCNEICLKNNQLDHLRRSIEEKSKELEFIEMDLDLKEHMMNEYDEVLELKEKE LECLRNSVKECSNQLEMKENELVRSQEVIDEHCKQLNEQEKILNSIKSLIQEYNEELE AKEEKYEALDKSVRDQAAKVKSKENELGLIEETIVDRSAELHSRDIEFHSLQTTIRRN QKELESTKKELNSVKARVRGYSEDLELKEQEFNAIQMCIEEHRQELCLKEKQLSSVQI SIKGCSKQLKVEEERLITIKNSILECTKELESKQQQLEVLKNSQGQLSDMVGSKEKQL NSIEKPCSNRLQEANVKEKYLDSLKRSLEERLEKLDLERKQFEARVKEFEVQAKQFDS VQKAVEERSKKLELKEKQLTNALHSQVRSENPSSFSLQVLGITNTETVNPNILNQIKT EQLDNFMISNAHETSSADLGVDATMDGRSLQGINNEHLYEPDLRQNEVLVALQMSPDP AKFVLDLMLGTCSEHQKKGGTGFEESVLKIYVLLLEQLLQVSPLVQPNVKADAMKLAI EWKAKLSSSAQNYIEVLGFLQFVAAFGLVSSFNKDEIFKLLLTAAQHQQAQNVCRVLG FTDMIPDFICSLIARKQYIEAVRFVCAFDCKDKFPPELLFNLFWEDVNGVAHEKCKMG KNSSEVREKASDEQIAALKSAIECIKNCKLDSSMPVEVMEKCIARLEQQKMNRRFSAL APAPAIQPKLQGQTNRNIGPSIPRNQSNPVATVPGQFQGGICASTRGSKLQELRNKRA WTNGPAIRSYTPQVPTVNKPYIPSASHHELSVPLNRDVAHFGLAANLGHSSNLMTRRV NIAEEQCLTHKRPKQW" mRNA complement(join(35621477..35621520,35621622..35621797, 35622532..35623104,35623987..35625955)) /locus_tag="TCM_025943" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT5G27220.1" /inference="similar to AA sequence:Phytozome:POPTR_0005s04570.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1679t3; weak similarity to Frigida-like protein; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9621t2" CDS complement(join(35621515..35621520,35621622..35621797, 35622532..35623104,35623987..35625826)) /locus_tag="TCM_025943" /note="encoded by transcript variant 2; alternatively spliced; weak similarity to Frigida-like protein" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY10628.1" /db_xref="Phytozome:POPTR_0005s04570.1" /db_xref="TAIR:AT5G27220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MZL9" /translation="MEDIKREIKLGELKRESLRKSLEQARDQASSILLFTLQWKDLEK HFDLIQQNIEKRVEVVELQEKELETEKRALKERQEVICLKENELSLLNEKIEECNRER KLKHTEANSTQKLLEECSLQFTLKEEDLDSVRKLVEGCSKELSLKKEELCSVNKLMSE CLEKLEGKEKQLGLVEEQIEKSSKELGVTEGKLDLVQSLVEECEGKLESKERELGLVT RRVDECCNEICLKNNQLDHLRRSIEEKSKELEFIEMDLDLKEHMMNEYDEVLELKEKE LECLRNSVKECSNQLEMKENELVRSQEVIDEHCKQLNEQEKILNSIKSLIQEYNEELE AKEEKYEALDKSVRDQAAKVKSKENELGLIEETIVDRSAELHSRDIEFHSLQTTIRRN QKELESTKKELNSVKARVRGYSEDLELKEQEFNAIQMCIEEHRQELCLKEKQLSSVQI SIKGCSKQLKVEEERLITIKNSILECTKELESKQQQLEVLKNSQGQLSDMVGSKEKQL NSIEKPCSNRLQEANVKEKYLDSLKRSLEERLEKLDLERKQFEARVKEFEVQAKQFDS VQKAVEERSKKLELKEKQLTNALHSQVRSENPSSFSLQVLGITNTETVNPNILNQIKT EQLDNFMISNAHETSSADLGVDATMDGRSLQGINNEHLYEPDLRQNEVLVALQMSPDP AKFVLDLMLGTCSEHQKKGGTGFEESVLKIYVLLLEQLLQVSPLVQPNVKADAMKLAI EWKAKLSSSAQNYIEVLGFLQFVAAFGLVSSFNKDEIFKLLLTAAQHQQAQNVCRVLG FTDMIPDFICSLIARKQYIEAVRFVCAFDCKDKFPPELLFNLFWEDVNGVAHEKCKMG KNSSEVRI" CDS complement(join(35621695..35621723,35622532..35623104, 35623987..35625826)) /locus_tag="TCM_025943" /note="encoded by transcript variant 3; alternatively spliced; weak similarity to Frigida-like protein" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY10629.1" /db_xref="Phytozome:POPTR_0005s04570.1" /db_xref="TAIR:AT5G27220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MZL9" /translation="MEDIKREIKLGELKRESLRKSLEQARDQASSILLFTLQWKDLEK HFDLIQQNIEKRVEVVELQEKELETEKRALKERQEVICLKENELSLLNEKIEECNRER KLKHTEANSTQKLLEECSLQFTLKEEDLDSVRKLVEGCSKELSLKKEELCSVNKLMSE CLEKLEGKEKQLGLVEEQIEKSSKELGVTEGKLDLVQSLVEECEGKLESKERELGLVT RRVDECCNEICLKNNQLDHLRRSIEEKSKELEFIEMDLDLKEHMMNEYDEVLELKEKE LECLRNSVKECSNQLEMKENELVRSQEVIDEHCKQLNEQEKILNSIKSLIQEYNEELE AKEEKYEALDKSVRDQAAKVKSKENELGLIEETIVDRSAELHSRDIEFHSLQTTIRRN QKELESTKKELNSVKARVRGYSEDLELKEQEFNAIQMCIEEHRQELCLKEKQLSSVQI SIKGCSKQLKVEEERLITIKNSILECTKELESKQQQLEVLKNSQGQLSDMVGSKEKQL NSIEKPCSNRLQEANVKEKYLDSLKRSLEERLEKLDLERKQFEARVKEFEVQAKQFDS VQKAVEERSKKLELKEKQLTNALHSQVRSENPSSFSLQVLGITNTETVNPNILNQIKT EQLDNFMISNAHETSSADLGVDATMDGRSLQGINNEHLYEPDLRQNEVLVALQMSPDP AKFVLDLMLGTCSEHQKKGGTGFEESVLKIYVLLLEQLLQVSPLVQPNVKADAMKLAI EWKAKLSSSAQNYIEVLGFLQFVAAFGLVSSFNKDEIFKLLLTAAQHQQAQNVCRVLG FTDMIPGQVPTRTAL" mRNA complement(join(35621760..35621784,35622532..35623104, 35623987..35625955)) /locus_tag="TCM_025943" /product="Uncharacterized protein isoform 4" /inference="alignment:exonerate- protein:2:TAIR:AT5G27220.1" /inference="similar to AA sequence:Phytozome:POPTR_0005s04570.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1679t2; weak similarity to Frigida-like protein; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9621t2" CDS complement(join(35621780..35621784,35622532..35623104, 35623987..35625826)) /locus_tag="TCM_025943" /note="encoded by transcript variant 4; alternatively spliced; weak similarity to Frigida-like protein" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY10630.1" /db_xref="Phytozome:POPTR_0005s04570.1" /db_xref="TAIR:AT5G27220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MZL9" /translation="MEDIKREIKLGELKRESLRKSLEQARDQASSILLFTLQWKDLEK HFDLIQQNIEKRVEVVELQEKELETEKRALKERQEVICLKENELSLLNEKIEECNRER KLKHTEANSTQKLLEECSLQFTLKEEDLDSVRKLVEGCSKELSLKKEELCSVNKLMSE CLEKLEGKEKQLGLVEEQIEKSSKELGVTEGKLDLVQSLVEECEGKLESKERELGLVT RRVDECCNEICLKNNQLDHLRRSIEEKSKELEFIEMDLDLKEHMMNEYDEVLELKEKE LECLRNSVKECSNQLEMKENELVRSQEVIDEHCKQLNEQEKILNSIKSLIQEYNEELE AKEEKYEALDKSVRDQAAKVKSKENELGLIEETIVDRSAELHSRDIEFHSLQTTIRRN QKELESTKKELNSVKARVRGYSEDLELKEQEFNAIQMCIEEHRQELCLKEKQLSSVQI SIKGCSKQLKVEEERLITIKNSILECTKELESKQQQLEVLKNSQGQLSDMVGSKEKQL NSIEKPCSNRLQEANVKEKYLDSLKRSLEERLEKLDLERKQFEARVKEFEVQAKQFDS VQKAVEERSKKLELKEKQLTNALHSQVRSENPSSFSLQVLGITNTETVNPNILNQIKT EQLDNFMISNAHETSSADLGVDATMDGRSLQGINNEHLYEPDLRQNEVLVALQMSPDP AKFVLDLMLGTCSEHQKKGGTGFEESVLKIYVLLLEQLLQVSPLVQPNVKADAMKLAI EWKAKLSSSAQNYIEVLGFLQFVAAFGLVSSFNKDEIFKLLLTAAQHQQAQNVCRVLG FTDMIPV" mobile_element 35628221..35629054 /note="source:CACAO_hAT_E2547_scaffold_5 2 1607" /mobile_element_type="transposon:TIR/hAT" gene complement(35629835..35632183) /locus_tag="TCM_025944" /note="dbxref CacaoGD:Thecc1EG025944" mRNA complement(join(35629835..35630279,35630723..35630942, 35631021..35631138,35631903..35632183)) /locus_tag="TCM_025944" /product="Trafficking protein" /inference="alignment:exonerate- protein:2:ricco:30128.m008674" /inference="similar to AA sequence:Phytozome:GSVIVT01021973001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9649t1" CDS complement(join(35630251..35630279,35630723..35630942, 35631021..35631138,35631903..35632054)) /locus_tag="TCM_025944" /codon_start=1 /product="Trafficking protein" /protein_id="EOY10631.1" /db_xref="Phytozome:GSVIVT01021973001" /db_xref="TAIR:AT3G05000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4YFC7" /translation="MGREVSESCIDSLLTEMVSTYCNRFYANKPELAARRIEAIGYQV GHQLSERYTMDRPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRW LTRMSIDQSPENGASEDTSIMADNKAVQSMHLYFPCGIIRGALSNLGIPCAVSADISN LPACSFVVRIKA" gene 35636041..35638599 /locus_tag="TCM_025945" /note="dbxref CacaoGD:Thecc1EG025945" mRNA join(35636041..35636363,35636779..35636997, 35637115..35637263,35637356..35637629,35637733..35638599) /locus_tag="TCM_025945" /product="SGNH hydrolase-type esterase superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s02420.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034863t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s02420.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.12 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9629t1" CDS join(35636105..35636363,35636779..35636997, 35637115..35637263,35637356..35637629,35637733..35637950) /locus_tag="TCM_025945" /note="paralog of Thecc1EG034863t1" /codon_start=1 /product="SGNH hydrolase-type esterase superfamily protein, putative" /protein_id="EOY10632.1" /db_xref="Phytozome:POPTR_0005s02420.1" /db_xref="TAIR:AT5G03980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N4J7" /translation="MDTSLRSQVLVLVFLVLVLLSPSCYAGILKTCQFDAIYQLGDSI SDTGNLIREDPLSPFGRLPYGQNFFKDATGRCSNGLLMIDFLALSTGIPFLEPYLNSD ALLTRGHGVNFAVAGSTALPVEILAENNVLAPVTNTSLRRQLDWMFSYFNGICRDQED CFKKLKTSLFMVGEIGGNDYNYALFQGKTFEEVRSMMPKVVQAIKDAVTRVVGYGATR VIVPGNFPIGCLPIYLTGFQSNHSAAYDGFHCLKGLNKLAIHHNNLLKRAIKELRKDL PNAIIVYGDYYNAFLQLLRKAELLGFDTKSTQKACCGIGGDYDYTLTRMCGAPGVPVC SDPDQYVSWDGVHLTQKAYKFMAGWLIRYIYPELQCRA" gene 35638090..35644930 /locus_tag="TCM_025946" /note="dbxref CacaoGD:Thecc1EG025946" mRNA join(35638090..35638493,35643502..35644930) /locus_tag="TCM_025946" /product="3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400064556" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025949t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s01190.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g11550t00001" gene complement(35638634..35640977) /locus_tag="TCM_025947" /note="dbxref CacaoGD:Thecc1EG025947" mRNA complement(join(35638634..35639142,35639248..35639378, 35639595..35639713,35639788..35639916,35640471..35640977)) /locus_tag="TCM_025947" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.16 coverage" CDS complement(join(35638862..35639142,35639248..35639378, 35639595..35639713,35639788..35639916,35640471..35640500)) /locus_tag="TCM_025947" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10634.1" /translation="MWHVACCFHQLTGGTVIVDRPLFDHAPLAWGALGGAPQGMGVEC SPGQRSIELAMGALDAPLAWGTRCGALPTREALIWCSFGSLTESPIAECTWGQNEFEP LGNTLLKNTQQTTGSLRISTDNKTNKFNIDGSTKEFMTILHALRCFSTSSYVGSPLII ESDSKIALTWIEKVGQRPWNKWHIFNEIDVLCISLVMVSFQHAYWEGNAFADSLARYG VDRSSHFSAWW" mobile_element complement(35640756..35641380) /note="source:INTACT85_F9_scaffold_4-int 725 1363" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 35640822..35641890 /note="source:CACAO_M_E12881_F215_scaffold_3 145 1213" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS 35643535..35644869 /locus_tag="TCM_025946" /note="paralog of Thecc1EG025949t1" /codon_start=1 /product="3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative" /protein_id="EOY10633.1" /db_xref="Phytozome:POPTR_0006s01190.1" /db_xref="TAIR:AT3G26040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RAL8" /translation="MEVQIISRETIKPFSPTPDHLRTHKLSLLDQLVPPIYLPMILFY SATDENDPRNYNISDYLKKSLSKALTHFYPFAGRIKDDLTVDCNDGGVTFVEAQVACD MSFVLEEPEIEVRQLLPCAPFEHSPQTQSSTDQVIPLAVQVNYFACGGMAISVCISHV IGDASAAAHFLKGWAALARGADNIEGVIYDSSSLFPPRDLSIFRKYVGGLVDANGKVE SPEDKFVTKRLMFNGSKITALRNEIGDGLNLYRPTRVEAVTAVVWEALINATAENDGS GTSPILAVSNAMNLRKRMNPPLPQQCIGNVSFSKMVSSLNVKIKNRSNLAKIINESIK ETDDEYIRKTFTSGECLNLMEKLCEKFEKNSKLGMFIFSCWCRFPFYEVDFGWGKPVW FECPLRANRVGFFVDTSDGEGIEAWITLRKEEMAKLEKEPGILAYATFKPSI" gene complement(35645076..35649732) /locus_tag="TCM_025948" /note="dbxref CacaoGD:Thecc1EG025948" mRNA complement(join(35645076..35645147,35647691..35647768, 35647884..35648038,35648140..35648484,35649606..35649732)) /locus_tag="TCM_025948" /product="DegP protease 1" /inference="alignment:exonerate- protein:2:ricco:29933.m001380.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016885t1" /inference="similar to AA sequence:Phytozome:Glyma19g01060.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9634t1" CDS complement(join(35647721..35647768,35647884..35648038, 35648140..35648484,35649606..35649660)) /locus_tag="TCM_025948" /note="paralog of Thecc1EG016885t1" /codon_start=1 /product="DegP protease 1" /protein_id="EOY10635.1" /db_xref="Phytozome:Glyma19g01060.1" /db_xref="TAIR:AT3G27925.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22609" /translation="MFEMLNYTKFYCIFLFDAYGYVVANYHLIRGASDLKVTLADQST YDAKVVGFDQDKDVAVLRVGAPKDKLIPAPVGISSDLLAGQKVYAIGKPCGLDHTLTA GFISGLRRDISSAATGRPIQDVRQTDAAIDPVDTAGDIVDQLVKFGKVTRPVLGIKFV PDQSVEQLGVSGVLVLDAPANGPVGNINIRYIYPSLLRSS" gene 35649198..35652778 /locus_tag="TCM_025949" /note="dbxref CacaoGD:Thecc1EG025949" mRNA join(35649198..35649279,35650800..35652778) /locus_tag="TCM_025949" /product="3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative" /inference="alignment:exonerate- protein:2:TAIR:AT3G30280.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025946t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s01190.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.18 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9636t1" CDS 35650836..35652155 /locus_tag="TCM_025949" /note="paralog of Thecc1EG025946t1" /codon_start=1 /product="3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative" /protein_id="EOY10636.1" /db_xref="Phytozome:POPTR_0006s01190.1" /db_xref="TAIR:AT3G26040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RAL8" /translation="MEVQIIDRETIKPSSPTPDHLRTHKLCLFDLLASPIYIPTLLFY SARDGSPTNSISDNLKKSLSKALTHFYPLAGRIKDDLTIDCNDDGATFIEAQVARDMS FVLEEPDIEVLQQLLPCDPLQHLPQTQPSTDQVLLAVQVNHFACGGMAICVCISHVVA DASAAANFLKGWAEVACGADIIEGVIYDCSSLFPLRDMSLFYRVMEILLHKTNSGSPE VITKRFLFDGSKIAALRNEMGDELNSYHPTRVEAVTALIWEALVAATAENVTTSPILE ASNIVNLRKRMNPPLPPQCIGNVCFVSMVSTPTENIENRTSLARKIHESIKEIDDDYI RKIFTSDAECFHNLMEKIFEEMKKSSNIGMFRFSSWCRFPFYETNFGWGKPIWFGTAF AINRNGCLLDTSDGEGIEAWISLTKEEMAQLEQQPGILAHAAFKPSI" gene complement(35652443..35658381) /locus_tag="TCM_025950" /note="dbxref CacaoGD:Thecc1EG025950" mRNA complement(join(35652443..35652757,35655340..35655348, 35655584..35655637,35656042..35656117,35656233..35656264, 35656435..35656530,35656687..35656788,35656874..35656962, 35657969..35658381)) /locus_tag="TCM_025950" /product="Copper/zinc superoxide dismutase 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s03160.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040688t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s04590.2" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g01959t00001" CDS complement(join(35652495..35652757,35655340..35655348, 35655584..35655637,35656042..35656117,35656233..35656264, 35656435..35656530,35656687..35656788,35656874..35656949)) /locus_tag="TCM_025950" /note="paralog of Thecc1EG040688t1" /codon_start=1 /product="Copper/zinc superoxide dismutase 1" /protein_id="EOY10637.1" /db_xref="Phytozome:POPTR_0005s04590.2" /db_xref="TAIR:AT1G08830.2" /db_xref="UniProtKB/TrEMBL:UniRef50_P24704" /translation="MVKAVAVLSSSEGVSGTIFFTQEGDGPTTVTGNISGLEPGLHGF HVHALGDTTNGCMSTGPHFNPAGKEHGAPEDENRHAGDLGNVTVGDDGCVSFSIIDKQ IPLTGPLSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLARGIGAQEKP VQYQKPSDCIDRCHGCTVNQCTAGLCVCGCALPLEELYAIKQEKPVQCRKPEECVSRC NGCTANKCTAGLCVCVC" mobile_element 35655902..35659559 /note="source:scaffold_5_CACTA_0616 1 3658" /mobile_element_type="transposon:TIR/CACTA" gene complement(35658063..35670382) /locus_tag="TCM_025951" /note="dbxref CacaoGD:Thecc1EG025951" mRNA complement(join(35658063..35659097,35659950..35660076, 35660891..35660931,35661143..35661184,35661380..35661440, 35661673..35661794,35662009..35662122,35662374..35662434, 35662521..35662631,35662745..35662819,35663421..35663448, 35663534..35663583,35663693..35663755,35664113..35664154, 35664393..35664471,35665834..35666249,35666359..35666517, 35666717..35666863,35667621..35667767,35668049..35668198, 35668451..35668600,35668788..35669101,35669203..35669264, 35670358..35670382)) /locus_tag="TCM_025951" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30128.m008672" /inference="similar to AA sequence:TAIR:AT4G08630.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1196t3_C1" CDS complement(join(35658979..35659097,35659950..35660076, 35660891..35660931,35661143..35661184,35661380..35661440, 35661673..35661794,35662009..35662122,35662374..35662434, 35662521..35662631,35662745..35662819,35663421..35663448, 35663534..35663583,35663693..35663755,35664113..35664154, 35664393..35664471,35665834..35666249,35666359..35666517, 35666717..35666863,35667621..35667767,35668049..35668198, 35668451..35668600,35668788..35669096)) /locus_tag="TCM_025951" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10638.1" /db_xref="TAIR:AT4G08630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7L318" /translation="MDRRKLIFERQQSTEGPGTPVTPALMSPLHRHTQSGSGYGSMGN VRKAQTKAAAQRLAAVMAHRQNDEDDDEEDQLDYNNISGTGGIGLVGGRAMRARSPRI DNKNMAQRRVPQVRTRQQPADEDKDEDDILVSGPASIGLAGGRGMQSRSPMHKNMPQR RAIPPVMTQQGADEDNDEDGLLVSGTASIGFAGGRALHSRSPAKINIAQRRAPQVMIQ QPADEDNEEDDLLVSGTASIGLARGRAMQSRSPMTKSIAHKRLPQVTTLQPSDKDNDE DDLLVSGRASIGLARGRAMQSRPSMAKTMAQRPVQHVAQQPGDEDNDEDDLANNSSSV SGTASIGLASGRARLPSSPLSVHTNQDQPPSTPSTPGTQTFLSVNSTEQPSSAHLIGQ PSHSISSVEQSMSPYSTSAGRPSLQSSIEQPLSTQASTAGRSSPSTSYIEQPLSARST ASGRQHLGVKTFSVAPSTVTMSLKPTSSVSTTEASTDSQRDKRLLADFGNMSSLKERG RQQSASALQDELDILQDENESLLEKLQLSEERCEEAEARARQLEKQIANLGEGVTLEA RLLSRKEAALQEREAALRVAAQTQGGKPEEIATLWTEAETARDEAMSALEKLQEAECE IKSLQTVTQRMTLTEEEMEEVVLKRCWLARYWSLCVQHGIQAEIAGAKHEYWSSFAPL PLEIVLAAGQRAKEGDFSSNNDLEEREKVLQDFSELSGERNVESMLLVEKGLRELALL KVEDAVAFAMAQHRRQNSLKTDEVKLPTEGQFEAFELSQEESEDVRFKQAWLTYFWRR AMNHGVEPDIADERLQFWINHSSRSSTSHDAVDVERGLMELRKLGLESQLWKKSREAL ELGSTTKLHIESDF" mobile_element 35659934..35664999 /note="source:scaffold_5_CACTA_0616 3659 8724" /mobile_element_type="transposon:TIR/CACTA" mobile_element 35665699..35671179 /note="source:scaffold_5_CACTA_0616 8725 14205" /mobile_element_type="transposon:TIR/CACTA" gene complement(35669501..35674492) /locus_tag="TCM_025952" /note="dbxref CacaoGD:Thecc1EG025952" mRNA complement(join(35669501..35670487,35670691..35673975, 35674083..35674492)) /locus_tag="TCM_025952" /product="ATP binding,leucine-tRNA ligases,aminoacyl-tRNA ligases,nucleotide binding,ATP binding,aminoacyl-tRNA ligases" /inference="alignment:exonerate- protein:2:TAIR:AT1G09620.1" /inference="similar to AA sequence:ricco:29876.m000251" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9898t1" CDS complement(join(35670484..35670487,35670691..35673956)) /locus_tag="TCM_025952" /note="dbxref ricco:29876.m000251" /codon_start=1 /product="ATP binding,leucine-tRNA ligases,aminoacyl-tRNA ligases,nucleotide binding,ATP binding,aminoacyl-tRNA ligases" /protein_id="EOY10639.1" /db_xref="TAIR:AT1G09620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I116" /translation="MATEGGKSYARRDKLLEIESKVRVWWEEKDVFKAEPGEKPPQPG EKFFGNFPFPYMNGFLHLGHAFSLSKLEFAAAYHRLRGANVLLPFAFHCTGMPIKASA DKLAREIQQFGDPPIFPHEVVEEEPNPKEEFDANEGANVAPDKFKGKKSKVASKSSGQ MFQWEIMRSFGLSDSEISKFQNPYEWLKFFPPLAVQDLKAFGLGCDWRRSFVTTDMNP FFDSFVKWQMRKLRSMGKIVKDVRYTIYSPLDGQPCADHDRASGEGVQPQEYTIIKME VVPPFPAKIRVLEGKKVFLAAATLRPETMYGQTNCWVLPDGKYGAFEINDTEVFILTE RAALNLAYQKLSRVPEKPTCLVELTGYDLIGLPVKSPLSFNEIIYALPMLTILTDKGT GIVTSVPSDAPDDYMALHDLKAKPAFRAKLGVKDEWVLPFEIVPIIDIPEFGDRAAEK VCVDLKIKSQNEKDKLAEAKRLVYLRGFTEGTMIVGEYAGTRVQEAKPLIRTKLVETG QAIIYSEPEKKVMSRSGDECVVALTDQWYITYGEPEWKKLAEECFSNMNLYSDETRHG FEHTLGWLNQWACSRSFGLGTRIPWDEEFLVESLSDSTIYMAYYTVAHLLQNGDMYGK SSDLVKPAQMTDEVWEFLFCGGPFPKSSDIPSSILNKMKQEFEYWYPFDLRVSGKDLI QNHLTFCIYNHTAIMSKDHWPRGFRCNGHIMLNSEKMSKSTGNFRTLRQAIEEFSADA TRFSLADAGDGVDDANFVFETANAAILRLTKEIAWMEEILAAESSLRTGPPSTYADRV FENEINIAVKMTEQSYRDCMFREALKTGFYDLQAARDEYRFSCGSGGMNRDLLWRFMD VQTRLITPICPHYAEFIWRELLKKGGFVVKAGWPTADSPDLKLKSANKYLQDSIVSMR KLLQKQISGSKNTKNKKGAPVSSLTEDKLKGLIIVNEQFDGWQAECLRILQSKFDNKT CTFFASDGEIMNALRQSTVGQAADFKQVQNRCMPFVRFKKAEAIKIGAQALDLKLPFG EIEVLKENLDLIKRQLALEEVEVLSATDPDAYVQAGSFASLLKQNPPSPGNPTAIFMS R" gene 35674354..35681474 /locus_tag="TCM_025953" /note="dbxref CacaoGD:Thecc1EG025953" mRNA join(35674354..35674581,35678079..35679078, 35680107..35681474) /locus_tag="TCM_025953" /product="Beta-hexosaminidase 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0001s23930.1" /inference="similar to AA sequence:frave:gene02330" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05364t00001" CDS join(35678235..35679078,35680107..35681059) /locus_tag="TCM_025953" /note="dbxref frave:gene02330" /codon_start=1 /product="Beta-hexosaminidase 2" /protein_id="EOY10640.1" /db_xref="TAIR:AT1G05590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SYK0" /translation="MLQSLNHKALYNAFEMTSREGKRRMLSKFLIIACLTVILAPPAL SLQSEINVWPKPRLLVWPKPLATFLSPNFTISSPNHQHLTPAVNRYLCLIKTEHHHPL VTPSVIVSNSSAPLKTLSINVIDLTAPLQHGVNETYALAVSEVDGTAYLTAATAWGAM RGLETFSQMVWGDPSVVPVGVYVWDAPLFAHRGVMLDTSRNYYAVEDILRTIGAMSAN KLNVFHWHITDSHSFPLMVPSEPELAAKGSYGPDMIYSPSDVARIVQFGLEHGVRVLP EIDSPGHSGSWTEAYPEIVACANMFWWPAGSLWADRLASEPGTGHLNPLNPKTYQVLK NVIRDVATLFPETFYHGGADEVIPGCWKADPTIQSFLSNGGTLSQLLETFVNSTLPYI ISLNRTVVYWEDVLLDDNVKVDSSFLPREYTILQTWNNGTNNTKKIVEAGYQAIVSSS EFYYLDCGHGDFLGNDSIYDQQTAGGNSGNGGSWCEPFKTWQTIYNYDITYGLSEEEA KLVLGGEVALWSEQADPTVLDPRIWPRTSAMAETLWSGNRDETGNKRYAEATDRLNEW RYRMVTRGIKAEPLQPLWCVRNPGMCNTVNAF" gene 35681547..35736168 /locus_tag="TCM_025954" /note="dbxref CacaoGD:Thecc1EG025954" mRNA join(35681547..35682086,35683240..35683431, 35683807..35683969,35684061..35684163,35684274..35684498) /locus_tag="TCM_025954" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30128.m008671.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014242t2" /inference="similar to AA sequence:ricco:30128.m008671" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc459t4; inference alignment:Newbler:10:TSA:cgbaP2_g07242t00001" mRNA join(35681553..35682086,35683240..35683446, 35683807..35683969,35684061..35684144,35684274..35684302, 35684690..35685038,35736049..35736168) /locus_tag="TCM_025954" /product="Uncharacterized protein isoform 5" /inference="alignment:exonerate- protein:2:ricco:30128.m008671.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014242t3" /inference="similar to AA sequence:ricco:30128.m008671" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc550t7; inference alignment:Newbler:10:TSA:cgbaP2_g07242t00001" mRNA join(35681553..35682086,35683240..35683431, 35683870..35683969,35684061..35684163,35684274..35684355, 35684502..>35684577) /locus_tag="TCM_025954" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:30128.m008671.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014242t2" /inference="similar to AA sequence:ricco:30128.m008671" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc550t6; inference alignment:Newbler:10:TSA:cgbaP2_g07242t00001" mRNA join(35681667..35682086,35683240..35683431, 35683807..35683969,35684061..35684355,35684502..35685272) /locus_tag="TCM_025954" /product="Uncharacterized protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:30128.m008671.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014242t3" /inference="similar to AA sequence:ricco:30128.m008671" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:PASA:2:TSA:puevd3b025099t1a2; inference alignment:Newbler:10:TSA:cgbaP2_g07242t00001" mRNA join(35681680..35682086,35683240..35683431, 35683807..35683969,35684061..35684163,35684274..35684355, 35684502..35684936) /locus_tag="TCM_025954" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30128.m008671.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014242t2" /inference="similar to AA sequence:ricco:30128.m008671" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g07242t00001; inference alignment:Newbler:10:TSA:cgbaP2_g07242t00001" CDS join(35681805..35682086,35683240..35683446, 35683807..35683969,35684061..35684144,35684274..35684302, 35684690..35684848) /locus_tag="TCM_025954" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:30128.m008671; paralog of Thecc1EG014242t3" /codon_start=1 /product="Uncharacterized protein isoform 5" /protein_id="EOY10645.1" /db_xref="TAIR:AT3G05010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94BV6" /translation="MQSIESIADSPFSQNPNNSSSSSVNGLYGWLFECHGFWHNLALI IPSLLFALFLGFQAKKSFQKLSHGRSYIMISYYGSLWLVSLLNLAWCSLQAWECTPGK EMVWNILSLFTTSGMLFLEVSLVAFLLQGNYTSGLEALTRTFVVSGLIVGLDLLLKVF LLLAIYLFGFGVPLFIDNTEHPHQVKWGLWVVHRLVLTAIYGFILFMYHSKWRERLPA RPAFYKYVAIMFILNALALIACGLTGNGCTAPQLFATACSMYKYCYGNEANNLEFALA LSFFIPGINSLSLFLVLYVCIEQLGDLSSDG" CDS join(35681805..35682086,35683240..35683431, 35683807..35683969,35684061..35684163,35684274..35684355, 35684502..35684579) /locus_tag="TCM_025954" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30128.m008671; paralog of Thecc1EG014242t2" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY10641.1" /db_xref="TAIR:AT3G05010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94BV6" /translation="MQSIESIADSPFSQNPNNSSSSSVNGLYGWLFECHGFWHNLALI IPSLLFALFLGFQAKKSFQKLSHGRSYIMISYYGSLWLVSLLNLAWCSLQAWECTPGK EMVWNILSLFTTSGMLFLEVSLVAFLLQGNYTSGLEALTRTFVVSGLIVGLDLLLKAI YLFGFGVPLFIDNTEHPHQVKWGLWVVHRLVLTAIYGFILFMYHSKWRERLPARPAFY KYVAIMFILNALALIACGLTGNGAGFGFWLYSATIVCYHALYLPLLYITFLADFFQEE DLHLENVYYSEMKDAGFFDTDWE" CDS join(35681805..35682086,35683240..35683431, 35683870..35683969,35684061..35684163,35684274..35684355, 35684502..>35684576) /locus_tag="TCM_025954" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30128.m008671; paralog of Thecc1EG014242t2" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY10643.1" /db_xref="TAIR:AT3G05010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94BV6" /translation="MQSIESIADSPFSQNPNNSSSSSVNGLYGWLFECHGFWHNLALI IPSLLFALFLGFQAKKSFQKLSHGRSYIMISYYGSLWLVSLLNLAWCSLQAWECTPGK EMVWNILSLFTTSGMLFLEVSLVAFLLQGNYTSGLEALTRTFVVSGLIVGLDLLLKVK WGLWVVHRLVLTAIYGFILFMYHSKWRERLPARPAFYKYVAIMFILNALALIACGLTG NGAGFGFWLYSATIVCYHALYLPLLYITFLADFFQEEDLHLENVYYSEMKDAGFFDTD WE" CDS join(35681805..35682086,35683240..35683431, 35683807..35683969,35684061..35684163,35684274..35684439) /locus_tag="TCM_025954" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30128.m008671; paralog of Thecc1EG014242t2" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY10642.1" /db_xref="TAIR:AT3G05010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94BV6" /translation="MQSIESIADSPFSQNPNNSSSSSVNGLYGWLFECHGFWHNLALI IPSLLFALFLGFQAKKSFQKLSHGRSYIMISYYGSLWLVSLLNLAWCSLQAWECTPGK EMVWNILSLFTTSGMLFLEVSLVAFLLQGNYTSGLEALTRTFVVSGLIVGLDLLLKAI YLFGFGVPLFIDNTEHPHQVKWGLWVVHRLVLTAIYGFILFMYHSKWRERLPARPAFY KYVAIMFILNALALIACGLTGNGAGFGFWLYSATIVCYHALYLPLLYITFLADFFQVI IYLRPSRSPNLGSFYFRFIVKISSC" CDS join(35681805..35682086,35683240..35683431, 35683807..35683969,35684061..35684167) /locus_tag="TCM_025954" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30128.m008671; paralog of Thecc1EG014242t3" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY10644.1" /db_xref="TAIR:AT3G05010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94BV6" /translation="MQSIESIADSPFSQNPNNSSSSSVNGLYGWLFECHGFWHNLALI IPSLLFALFLGFQAKKSFQKLSHGRSYIMISYYGSLWLVSLLNLAWCSLQAWECTPGK EMVWNILSLFTTSGMLFLEVSLVAFLLQGNYTSGLEALTRTFVVSGLIVGLDLLLKAI YLFGFGVPLFIDNTEHPHQVKWGLWVVHRLVLTAIYGFILFMYHSKWRERLPARPAFY KYVAIMFILNALALIACGLTGNGAGFGFW" gene 35685606..35692769 /locus_tag="TCM_025955" /note="dbxref CacaoGD:Thecc1EG025955" mRNA join(35685606..35688307,35688630..35688673, 35689233..35689425,35692550..35692769) /locus_tag="TCM_025955" /product="Leucine-rich repeat containing protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Sb05g025470.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025960t1" /inference="similar to AA sequence:ricco:29761.m000426" /note="transcript variant 1; alternatively spliced; quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9735t2" CDS join(35685752..35688307,35688630..35688641) /locus_tag="TCM_025955" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29761.m000426; paralog of Thecc1EG025960t1" /codon_start=1 /product="Leucine-rich repeat containing protein isoform 1" /protein_id="EOY10646.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SUF5" /translation="MAESFLFNIAERVLEKIALLAVEEVRLLFNVENDLEELQDTMTH IKAVLLDAERQQHQNEALRLSIWKLRDLFDDAEDVIDEIECEALRKRVVNYPSTSIKV RCLPSCFVPLAFSSKMGHKIKEINKRIDTIATEWDRFKLVTHQVDNRRVIHRETYSFV NSSDVIGRDEDREKIINLLKEPSDESGNIPVIPIVGIGGLGKTTLAQFVYNDERVIKL FSLRIWVCVSEEFDLRRLLKEMICSVSKKNCDDSQIDILQTQLRSLLNENNFLLVLDD VWNEDRAKWIQFKNLLMSMGNLSRSKIIVTTRSLKVASIMSSCDSYVLKGLFYEDCLT LFTKWAFNDGDERRYPNLMRIGKKIVEKCKGVPLAVRTLGSLLFSKTDEREWILLRDN EIWRLEQSENDILPVLKLSYHYLPSHLQRCLTYLSLFPKDYLYDTDYIIQFWMAYGLL ASSNQNEEWEDIGITYFKELWLRCFVQDVTDHGSFYRFKMHDLIHDLTLNLSQRECLT VNRQQMKVIEKVRHLSFSLDSPLGVPQSLKKLKRVRTIVVPPLPFSTENRSIDESFVN ACILNFKYLRLLDLSYTLLEELPESIGTLKHLRYLDLSLCRRMRKIPSSICKLQSLLT LRLFGVPLIEVPESLQSLISLRFLEITTDALLLRVIQPGCWSSLQFLFLHKCDRLESI FDGMQHLTSLRRLGIRGCVRLISLPRSLKFLTKLEEINIKSCQKINLCMEVEEAEDQD LHLSLKAFSVLWSDALTDLPRLLLKGSANTLQSIQIIGCKNFEVLPEWLQNLTSLQKL EISYCRKLSSLPEGMDRLTALRLLKIKGCPTLSERCRRDGGADWPKISHVQEVEVDL" mRNA join(35686556..35688311,35688634..35688673, 35689233..35689737) /locus_tag="TCM_025955" /product="Leucine-rich repeat containing protein isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025960t1" /inference="similar to AA sequence:ricco:29761.m000426" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1553t12; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9735t2; inference alignment:Newbler:10:TSA:cgbaP2_g13939t00001" CDS join(35686628..35688311,35688634..35688641) /locus_tag="TCM_025955" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29761.m000426; paralog of Thecc1EG025960t1" /codon_start=1 /product="Leucine-rich repeat containing protein isoform 2" /protein_id="EOY10647.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SUF5" /translation="MSMGNLSRSKIIVTTRSLKVASIMSSCDSYVLKGLFYEDCLTLF TKWAFNDGDERRYPNLMRIGKKIVEKCKGVPLAVRTLGSLLFSKTDEREWILLRDNEI WRLEQSENDILPVLKLSYHYLPSHLQRCLTYLSLFPKDYLYDTDYIIQFWMAYGLLAS SNQNEEWEDIGITYFKELWLRCFVQDVTDHGSFYRFKMHDLIHDLTLNLSQRECLTVN RQQMKVIEKVRHLSFSLDSPLGVPQSLKKLKRVRTIVVPPLPFSTENRSIDESFVNAC ILNFKYLRLLDLSYTLLEELPESIGTLKHLRYLDLSLCRRMRKIPSSICKLQSLLTLR LFGVPLIEVPESLQSLISLRFLEITTDALLLRVIQPGCWSSLQFLFLHKCDRLESIFD GMQHLTSLRRLGIRGCVRLISLPRSLKFLTKLEEINIKSCQKINLCMEVEEAEDQDLH LSLKAFSVLWSDALTDLPRLLLKGSANTLQSIQIIGCKNFEVLPEWLQNLTSLQKLEI SYCRKLSSLPEGMDRLTALRLLKIKGCPTLSERCRRDGGADWPKISHVQEVEVDL" gene complement(35689483..35702892) /locus_tag="TCM_025957" /note="dbxref CacaoGD:Thecc1EG025957" mRNA complement(join(35689483..35690603,35697917..35698039, 35698576..35698686,35699815..35699939,35702661..35702892)) /locus_tag="TCM_025957" /product="Acyl carrier protein 2" /inference="alignment:exonerate- protein:2:ricco:30128.m008670.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025966t1" /inference="similar to AA sequence:frave:gene16428" /note="quality class is medium-utrpoor, express is medium, homology is paralog strong, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.25 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9741t1" CDS complement(join(35690475..35690603,35697917..35698039, 35698576..35698686,35699815..35699934)) /locus_tag="TCM_025957" /note="dbxref frave:gene16428; paralog of Thecc1EG025966t1" /codon_start=1 /product="Acyl carrier protein 2" /protein_id="EOY10648.1" /db_xref="TAIR:AT1G54580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BLR3" /translation="MAILKALKLFAATPYTSSPLIIESDSRVALSWLNSIGKTTATTR VSGLKLVSFMNQGRSSLSFNLRPMLALLRISCAAKPETVDKVCAIVRKQLALPNDKPV TGDSKFAELGAASLDTVEIVMGLEEEFGITVEEDNAQSIATVQDAADLIEKVCSEKSA " gene 35693119..35696201 /locus_tag="TCM_025958" /note="dbxref CacaoGD:Thecc1EG025958" mRNA join(35693119..35693476,35693555..35693839, 35694407..35694531,35694919..35695068,35695210..35695651, 35695884..35696201) /locus_tag="TCM_025958" /product="Leucine-rich repeat containing protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025965t1" /inference="similar to AA sequence:ricco:29761.m000426" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.26 coverage" CDS join(35693174..35693476,35693555..35693839, 35694407..35694531,35694919..35695068,35695210..35695651, 35695884..35695946) /locus_tag="TCM_025958" /note="dbxref ricco:29761.m000426; paralog of Thecc1EG025965t1" /codon_start=1 /product="Leucine-rich repeat containing protein" /protein_id="EOY10649.1" /translation="MVELFLFNIAERVLERIALLAGEEVLLAFSVKSDLRKLQDTMSS IKAVLLDAERQRHQNEKLRLCMWKLRDIFYDVEDVLDEFECEALRKQIANQPSISVKR LDKIAAEWGRFDLGVTGDNRRVIHRETHSFVNSSNVIGRDVDKKNILNLLMRPSEGRN IPVITIVGIGGLGKTTLAQFVYNDERVIKHFPLRIWDHIYYDDYVIQFWMANGPLEYP KQNQEWEDVGGRYLNELRSRIRKLPSSFYKLRSLQTLRMWDTTLKWLPDSMQSLIRLR YLEITIDATHLKLPRSLKFLTKLEHLHIRQCRAINLHMEPEEKEDQDFALSLKTFSIW GLEALTDLPRLLLEGSARTLQCIQINICGKFEVLPEWLRNLTSLQKLGNRYCPKLTSL PEGMDRLTALRQLKVEGCPTLSERCQRDGGEDWPKISQVQDVEYLACYLSFVMGMPYA DLPVK" mobile_element 35697291..35697406 /note="source:scaffold_9_CACTA_0929 1 114" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(35699228..35699350) /note="source:scaffold_4_CACTA_0511 7092 7214" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(35700004..35700092) /note="source:CACAO_on_SS_E42_scaffold_2 17188 17277" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(35700307..35701572) /note="source:scaffold_10_CACTA_0130 8380 9606" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(35701569..35701897) /note="source:scaffold_10_CACTA_0130 6252 6572" /mobile_element_type="transposon:TIR/CACTA" gene 35702239..35707048 /locus_tag="TCM_025959" /note="dbxref CacaoGD:Thecc1EG025959" mRNA join(35702239..35702504,35702926..35703623, 35703714..35703776,35703867..35703997,35704190..35704986, 35705138..35705447,35706518..35707048) /locus_tag="TCM_025959" /product="Leucine-rich repeat containing protein" /inference="alignment:exonerate- protein:2:Phytozome:Sb05g025470.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025955t1" /inference="similar to AA sequence:ricco:29761.m000426" /note="quality class is medium, express is weak, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.20 coverage" CDS join(35702350..35702504,35702926..35703623, 35703714..35703776,35703867..35703997,35704190..35704986, 35705138..35705447,35706518..35706529) /locus_tag="TCM_025959" /note="dbxref ricco:29761.m000426; paralog of Thecc1EG025955t1" /codon_start=1 /product="Leucine-rich repeat containing protein" /protein_id="EOY10650.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H815" /translation="MKRISQVAQKPLNGGPQMAVDWGCLRSGFHVHISVLNFFMVSVN FLATPTNRKGSGEIALLALKEVRLAFNVENDLEELQDTMTLIKAVLLDAERQQEQNKA LSHSIWKLRDLFYDAEDVIDEIECEAPRKEVVNYPSTSVKVRCLPSCFVPLAFSSKMG HKIKEINKRIDTIATEWDRFNLGQQVDNRRVIHRETHSFVNSSDVMGRDEDRENIINL LKEPSDESGNSPVILIVGIGGLGKTTLAQLAYNDERVIKLFLLRIWVCVSEEFDLRRL LKEMVYSINDVWNEDRVTWIELKNLLISMGLSYEDCLTLFTKWAFNDGDERRYPNLMR IGEKIVEKCKGVPLALYDTDYIIQFWMANGLLTGSNQNEEWEDIGITYFKELWLRCFV QDVTDHGSFYEFKMHDLIHDLASNRSQKECLTVNHQSMKVVEKVRHLSFSLDIPLGVP QSLKKLKRVRTIVVPPLPFAKENRSIDESFVNVCILNFKYLRLLDLSYTLLEELPESI CTLKHLRYLDLSLCHRMRKIPSSICKLQSLLTLRLFGFPLIEVPEGLQSLISLRFLEI TTDALLLRDIQPGCWSSLQFLHLYECEMLESIFDGMQHLTSLRRLAIQGASWSGALTD LPQLLLKGSASTLQSIKIEGCENFELLPEWLQNLTSLQKLEMRNCRKLSSLPEGMDRL TALTQLKIIACPTLSERCRRDGGADWPKISHVREAEQMS" gene 35702867..35740251 /locus_tag="TCM_025960" /note="dbxref CacaoGD:Thecc1EG025960" mRNA join(35702867..35703237,35714084..35714120, 35737651..35739822,35740144..35740251) /locus_tag="TCM_025960" /product="Leucine-rich repeat containing protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g29370.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025955t1" /inference="similar to AA sequence:ricco:29761.m000426" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.18 coverage" CDS join(35703017..35703237,35714084..35714120, 35737651..35739822,35740144..35740176) /locus_tag="TCM_025960" /note="dbxref ricco:29761.m000426; paralog of Thecc1EG025955t1" /codon_start=1 /product="Leucine-rich repeat containing protein" /protein_id="EOY10651.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SUF5" /translation="MTLIKAVLLDAERQQEQNKALSHSIWKLRDLFYDAEDVIDEIEC EAPRKEVVNYPSTSVKVRCLPSCFVPLAFSSKMGHKIKEINKRIDKIATEWDRFNLGQ QVDNRRVIHRETHSFVNASDVIGRDEDRENIINLLKEPSDESGNIPVIPIVGIGGLGK TTLAQFVYNDERVIKLFSLRIWVCVSEEFDLRRLLQEMIYSISKKKCDDTKIDILQTQ LRSLVNDENFLLVLDDVWNEDRVKWIEFKNLLMSMGNLSRNKMIVTTRTLKVASIMSS CDPYVLKGLSHEDCLILFTKWAFNDEDERQYPKLMRIGEKIVEKCKGVPLAVRTLGSL LFSKTDEYEWILLRDNEIWRLEQRENDILPVLKLSYHYLPSHLQRCLTYLSLFPKDYL YDTDYIIQFWMANGLLASSNQNEEWEDIGITYFKELWLRCFVQDVTDRGSFYLFKMHD LIHDLALNLSQRECLTVNRQPLKVVEKVRHLSFSLDSPLRVPQSLKKLKLVRTIMVPS LPFSKENRSIDESFVNACILNFKYLRLLDLSYTLLEELPESIGTLKHLRYLDLTLCHR MRKIPSSICKLQSLLTLRLFGVPLIEVPESLQSLISLRFIEITTCGPLLRDIQPGCWS SLQFLYLYQCDMLVSIFDGMQHLTSLRTLTIIECVRLISLPRSLKFLTKLEEIDIRRC QKINLCMEVEEAEDQDLHLSLKTFSIFELGALTDLPRLLLEGSASTLQSIKIESCENF EVLQEWLQNLTSIQKLEISYCPKLSSLPEGMDRLTALTQLKIKGCPTLSERCRRDGGA DWPKISHVQEVEVDLPASSESE" mobile_element complement(35708404..35710841) /note="source:CACAO_M_E23009_F76_scaffold_4 2 2453" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(35712136..35712181) /note="source:scaffold_1_CACTA_0016 6386 6434" /mobile_element_type="transposon:TIR/CACTA" mobile_element 35717828..35717917 /note="source:scaffold_9_CACTA_0929 1 88" /mobile_element_type="transposon:TIR/CACTA" mobile_element 35722664..35723798 /note="source:INTACT639F_F363_scaffold_5-int 7461 8584" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 35729113..35729202 /note="source:scaffold_9_CACTA_0929 1 88" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(35729908..35732788) /note="source:INTACT597_F267_scaffold_2-int 5756 8663" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 35732712..35732818 /note="source:CACAO_M_E24592_F195_scaffold_4 10914 11015" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 35736482..35736564 /note="source:scaffold_4_CACTA_0511 15765 15841" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(35736490..35736566) /note="source:scaffold_4_CACTA_0511 5714 5790" /mobile_element_type="transposon:TIR/CACTA" mobile_element 35741974..35742063 /note="source:scaffold_9_CACTA_0929 1 88" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(35748123..35749259) /note="source:CACAO_on_E683_scaffold_9 1196 2314" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 35752573..35754281 /locus_tag="TCM_025963" /note="dbxref CacaoGD:Thecc1EG025963" mRNA join(35752573..35752924,35753288..35753331, 35753900..35754281) /locus_tag="TCM_025963" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025960t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.58 coverage" CDS join(35752600..35752924,35753288..35753331, 35753900..35754013) /locus_tag="TCM_025963" /note="paralog of Thecc1EG025960t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10652.1" /translation="MEVEEAEDQDLHLSLKTFSVSWSDALTDLPRLLLEGSASTLQSI KIGECENIEVLPEWLQNLTSLQKLEISYCPNLSSPPEGMDRLTALTQLKIKGCPTLSR RWRPVGGRPVKELPIGIKEQQADLVMDKSTTACTLWKLSLCLLQSREPCIHVRDCDFN " gene complement(35754146..35756962) /locus_tag="TCM_025964" /note="dbxref CacaoGD:Thecc1EG025964" mRNA complement(join(35754146..35755264,35756902..35756962)) /locus_tag="TCM_025964" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is ortholog weak, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.13 coverage" CDS complement(35754950..35755252) /locus_tag="TCM_025964" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10653.1" /translation="MGLEQEFGITVEEDNAQSIATVQGAADLIEQLCSEKSAWKLGPK LEIHLPMLMPPTSLLSLEHLTILLRTQFYLFVQSRKTHKVVEIFSSIMDLSFCVPS" gene 35757848..35760748 /locus_tag="TCM_025965" /note="dbxref CacaoGD:Thecc1EG025965" mRNA join(35757848..35758151,35759059..35760377, 35760536..35760748) /locus_tag="TCM_025965" /product="Leucine-rich repeat containing protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025960t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.33 coverage" CDS join(35757852..35758151,35759059..35760377, 35760536..35760554) /locus_tag="TCM_025965" /note="paralog of Thecc1EG025960t1" /codon_start=1 /product="Leucine-rich repeat containing protein" /protein_id="EOY10654.1" /db_xref="TAIR:AT3G14460.1" /translation="MVGLFLFNIAERVLEKIALLAGEVLLAFSVKSDLRKLQDTMSSI KAVLLDAERQQHQNEKLRLCMWKLRDIFYDVEDVLDEFECEALRKQIANHPCISVKAL KLSYHHLPSPLQRCLAFLSLYEKDHIYYDDDVIQFWMANGLLEYPKQNQEWEDVGGRY LNELRSRCFIQDADYGGFKMHDLIHDLALDVSQKECKTLYRQTENVDEKVRHVSFCDD QSFIKVPLVLKESKHVRTIIAQNLSKELKTIDKSFIKFCVSNFKYLRALDLSYSSLKA LPNSVGTLKHLRYRDLSSSRIRKLPSSFYKLRSLQTLRMWDTTLKRLPDNMQSLIRLR YLEITIEATHLKEIRPGCWSSLQYLGLLGCGNLECLFEGMQYLTSLRTLYVAGCSKLV RLPRSLKFLTKLEHLHILRCRAINLHMEPEEKEDQDLALSLKTFSIWGLEALTDLPRL LLEGSARTLQCIQINICGKFEVLPEWLRSLTSLQKLEIRYCPKLTSLLEGMGRLTALR QLKVEGCPTLSERCQRDGGEDWPNFHKSERLRLVADN" gene complement(35762300..35765044) /locus_tag="TCM_025966" /note="dbxref CacaoGD:Thecc1EG025966" mRNA complement(join(35762300..35762574,35763252..35763374, 35763914..35764024,35764969..35765044)) /locus_tag="TCM_025966" /product="Acyl carrier protein" /inference="alignment:exonerate- protein:2:ricco:30128.m008670" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025957t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s04630.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01088t00001" CDS complement(join(35762446..35762574,35763252..35763374, 35763914..35764024,35764969..35765019)) /locus_tag="TCM_025966" /note="paralog of Thecc1EG025957t1" /codon_start=1 /product="Acyl carrier protein" /protein_id="EOY10655.1" /db_xref="Phytozome:POPTR_0005s04630.1" /db_xref="TAIR:AT1G54630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BLR3" /translation="MASMAGSSISMQPRHTLATTRVSGLKLVSFMNQGRSSLSFNLRP MPARLRISCAAKPETVDKVCAIVRKQLALPNDKPVTGDSKFADLGADSLDTVEIVMGI EEEFGIAVEEDNAQSITTVQDAADLVEKLCSEKSA" mobile_element 35765704..35766866 /note="source:scaffold_5_CACTA_0614 1448 2581" /mobile_element_type="transposon:TIR/CACTA" mobile_element 35766443..35766937 /note="source:CACAO_Again_on_S_E199_scaffold_6 317 816" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(35770680..35770766) /note="source:scaffold_4_CACTA_0511 9655 9739" /mobile_element_type="transposon:TIR/CACTA" gene 35772684..35777259 /locus_tag="TCM_025968" /note="dbxref CacaoGD:Thecc1EG025968" mRNA join(35772684..35773266,35773737..35773817, 35774188..35774258,35774414..35774495,35774993..35775108, 35775184..35775366,35775626..35776075,35776224..35776301, 35776873..35777080) /locus_tag="TCM_025968" /product="Vamp/synaptobrevin-associated protein 27-2, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene16429" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021123t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021970001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07712t00001" mRNA join(35772922..35773124,35773737..35773817, 35774188..35774258,35774414..35774495,35774993..35775108, 35775184..35775366,35775626..35776075,35776224..35776301, 35776873..35777259) /locus_tag="TCM_025968" /product="Vamp/synaptobrevin-associated protein 27-2, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene16429" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021123t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021970001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g02107t00001; alternateUTRof:Thecc1EG025968t1; inference alignment:Newbler:10:TSA:cgbaB_g07712t00001" CDS join(35773769..35773817,35774188..35774258, 35774414..35774495,35774993..35775108,35775184..35775366, 35775626..35776075,35776224..35776301,35776873..35776986) /locus_tag="TCM_025968" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG021123t1" /codon_start=1 /product="Vamp/synaptobrevin-associated protein 27-2, putative isoform 1" /protein_id="EOY10656.1" /db_xref="Phytozome:GSVIVT01021970001" /db_xref="TAIR:AT1G08820.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9REW5" /translation="MTTQLLEIQPKELKFVFILKKQCSCSVSLRNNTNQYVAFKVKTT SPKKYCVRPNVGIILPKSVCEFTVTMQAQREAPPDMICRDKFLIQSTIVPAGTTDEDI TSAAFVKDSGRYIEDNKLKVALVSPPHSPVLSPINGTMNQGVDYDASIPKEPVLSRVG VLAPPQTVAKVEESKIINFDDLKPTKDVEWKPRKDMFYAEDLKLKEDAELKPRNDGVN GEDLKLTKDAELKPKDNLVNSKELKPAKDVESKPVKDVESKPMEDILDTEELKSVKIK EFDALKDGEVKTLKAVEELKLVKDVEEMKSKLTDLESKLGEAEATIAKLTVESRLSTQ ERTILQEELALMRKKTNLRKVQVGFPLLFVCMVALVSVFLGCLLRR" CDS join(35773769..35773817,35774188..35774258, 35774414..35774495,35774993..35775108,35775184..35775366, 35775626..35776075,35776224..35776301,35776873..35776986) /locus_tag="TCM_025968" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG021123t1" /codon_start=1 /product="Vamp/synaptobrevin-associated protein 27-2, putative isoform 1" /protein_id="EOY10657.1" /db_xref="Phytozome:GSVIVT01021970001" /db_xref="TAIR:AT1G08820.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9REW5" /translation="MTTQLLEIQPKELKFVFILKKQCSCSVSLRNNTNQYVAFKVKTT SPKKYCVRPNVGIILPKSVCEFTVTMQAQREAPPDMICRDKFLIQSTIVPAGTTDEDI TSAAFVKDSGRYIEDNKLKVALVSPPHSPVLSPINGTMNQGVDYDASIPKEPVLSRVG VLAPPQTVAKVEESKIINFDDLKPTKDVEWKPRKDMFYAEDLKLKEDAELKPRNDGVN GEDLKLTKDAELKPKDNLVNSKELKPAKDVESKPVKDVESKPMEDILDTEELKSVKIK EFDALKDGEVKTLKAVEELKLVKDVEEMKSKLTDLESKLGEAEATIAKLTVESRLSTQ ERTILQEELALMRKKTNLRKVQVGFPLLFVCMVALVSVFLGCLLRR" gene complement(35777473..35782900) /locus_tag="TCM_025970" /note="dbxref CacaoGD:Thecc1EG025970" mRNA complement(join(35777473..35777855,35778137..35778170, 35778274..35778357,35778620..35778682,35778770..35778908, 35779120..35779221,35779354..35779454,35779574..35779640, 35779918..35779964,35780049..35780243,35780333..35780379, 35780462..35780521,35780718..35780815,35781162..35781280, 35781410..35781762,35782371..35782900)) /locus_tag="TCM_025970" /product="Sodium/hydrogen exchanger" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s04660.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021126t1" /inference="similar to AA sequence:ricco:30128.m008667" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9848t3" CDS complement(join(35777557..35777855,35778137..35778170, 35778274..35778357,35778620..35778682,35778770..35778908, 35779120..35779221,35779354..35779454,35779574..35779640, 35779918..35779964,35780049..35780243,35780333..35780379, 35780462..35780521,35780718..35780815,35781162..35781280, 35781410..35781586)) /locus_tag="TCM_025970" /note="dbxref ricco:30128.m008667; paralog of Thecc1EG021126t1" /codon_start=1 /product="Sodium/hydrogen exchanger" /protein_id="EOY10658.1" /db_xref="TAIR:AT3G05030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MZL2" /translation="MVAPQLAAVVSKLQTLSTSDHASVVSLNIFVALLCTCIVIGHLL EENRWMNESITALVIGLCTGVIILLTSGGKSSHLLVFSEDLFFIYLLPPIIFNAGFQV KKKQFFRNFITIMLFGAVGTLISCTVISLGVIQFFKEMDIGSLDIGDFLAIGAIFAAT DSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLTNINPRIALEFIGS FFYLFLASTFLGVIVGLVSAYIIKTLYFGRHSTDREFALMMLMAYLSYIMAELFYLSG ILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAETFIFLYVGMDALDIEKWRF VSDSPGTSVAVSSVLLALVMAGRAAFVFPLSFLSNLARKSASEKISFRQQIIIWWAGL MRGAVSMALAYNQFTRLGHTQLRANAIMITSTITIVLFSTVVLLHINAPNMFGSCCLI PKYTSMLSDPSTPKSVTVPLLGSGQDSFEDGLGGIPRPSSIRALLTTPTHTVHHYWRK FDDAFMRPVFGGRGFVPFVPGSPTERSEHNQPQWQ" mobile_element complement(35785368..35785481) /note="source:scaffold_5_CACTA_0612 5287 5378" /mobile_element_type="transposon:TIR/CACTA" gene 35786596..35800130 /locus_tag="TCM_025971" /note="dbxref CacaoGD:Thecc1EG025971" mRNA join(35786596..35787264,35787359..35787589, 35788380..35788694,35789450..35789557,35790253..35790439, 35790620..35790882,35791632..35791761,35793273..35793334, 35793629..35793889,35793965..35794041,35794609..35794700, 35797022..35797104,35797731..35797802,35798258..35798383, 35798488..35799112) /locus_tag="TCM_025971" /product="Trimeric LpxA-like enzyme isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01026774001" /inference="similar to AA sequence:Phytozome:GSVIVT01026774001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:PASA:2:TSA:puevd3b025118t1a2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc780t10" mRNA join(35786596..35787264,35787359..35787589, 35788380..35788694,35789450..35789557,35790253..35790439, 35790620..35790882,35791632..35791761,35793270..35793334, 35793629..35793889,35793965..35794041,35794609..35794700, 35797022..35797104,35797731..35797802,35798258..35798383, 35798488..35798744) /locus_tag="TCM_025971" /product="Trimeric LpxA-like enzyme isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01026774001" /inference="similar to AA sequence:Phytozome:GSVIVT01026774001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc780t10" mRNA join(35786914..35787264,35787359..35787589, 35788380..35788694,35789450..35789557,35790253..35790439, 35790620..35790882,35791632..35791761,35793270..35793334, 35793629..35793889,35793965..35794041,35794609..35794700, 35797022..35797104,35797731..35797802,35798258..35799060, 35799598..35800130) /locus_tag="TCM_025971" /product="Trimeric LpxA-like enzyme isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01026774001" /inference="similar to AA sequence:Phytozome:GSVIVT01026774001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc260t6; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc780t10" mRNA join(35786914..35787264,35787359..35787589, 35788380..35788694,35789450..35789557,35790253..35790439, 35790620..35790882,35791632..35791761,35793270..35793334, 35793629..35793889,35793965..35794041,35794609..35794700, 35797022..35797104,35797731..35797802,35798258..35798383, 35798488..35799060,35799598..35799728) /locus_tag="TCM_025971" /product="Trimeric LpxA-like enzyme isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01026774001" /inference="similar to AA sequence:Phytozome:GSVIVT01026774001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc260t7_C2; alternateUTRof:Thecc1EG025971t1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc780t10" mRNA join(35786972..35787264,35787359..35787589, 35788380..35788694,35789450..35789557,35790253..35790439, 35790620..35790882,35791632..35791761,35793270..35793334, 35793629..35793889,35793965..35794041,35794609..35794700, 35797022..35797104,35797731..35797802,35798283..35798383, 35798488..35798940) /locus_tag="TCM_025971" /product="Trimeric LpxA-like enzyme isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01026774001" /inference="similar to AA sequence:Phytozome:GSVIVT01026774001" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc795t9; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc780t10" mRNA join(35786972..35787264,35787359..35787589, 35788380..35788694,35789450..35789557,35790253..35790439, 35790620..35790882,35791632..35791761,35793270..35793334, 35793629..35793889,35793965..35794027,35794609..35794700, 35797022..35797104,35797731..35797802,35798283..35798383, 35798488..35798572) /locus_tag="TCM_025971" /product="Trimeric LpxA-like enzyme isoform 7" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01026774001" /inference="similar to AA sequence:Phytozome:GSVIVT01026774001" /note="transcript variant 8; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc795t1; alternateUTRof:Thecc1EG025971t7; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc780t10" mRNA join(35786972..35787264,35787359..35787589, 35788380..35788694,35789450..35789557,35790253..35790439, 35790620..35790882,35791632..35791761,35793270..35793334, 35793629..35793889,35793965..35794027,35794609..35794700, 35797022..35797104,35797731..35797802,35798258..35798383, 35798488..35798514) /locus_tag="TCM_025971" /product="Trimeric LpxA-like enzyme isoform 7" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01026774001" /inference="similar to AA sequence:Phytozome:GSVIVT01026774001" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc780t1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc780t10" mRNA join(35787025..35787264,35787359..35787589, 35788380..35788694,35789450..35789557,35790253..35790439, 35790620..35790882,35791632..35791761,35793270..35793334, 35793629..35793889,35793965..35794041,35794609..35794700, 35797022..35797104,35797731..35797802,35798258..35798383, 35798488..35799112) /locus_tag="TCM_025971" /product="Trimeric LpxA-like enzyme isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01026774001" /inference="similar to AA sequence:Phytozome:GSVIVT01026774001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10055t2; alternateUTRof:Thecc1EG025971t1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc780t10" CDS join(35787127..35787264,35787359..35787589, 35788380..35788694,35789450..35789557,35790253..35790439, 35790620..35790882,35791632..35791761,35793270..35793334, 35793629..35793889,35793965..35794041,35794609..35794700, 35797022..35797104,35797731..35797802,35798258..35798383, 35798488..35798520) /locus_tag="TCM_025971" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Trimeric LpxA-like enzyme isoform 1" /protein_id="EOY10659.1" /db_xref="Phytozome:GSVIVT01026774001" /db_xref="TAIR:AT2G34970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O64760" /translation="MGAQKKGATARVSEDPEELARHPLQAILLADSFTTKFRPITLER PKVLLPLANIPMIDYTLAWLESAGVEEVFVFCCAHSKQVIDYLESSDWSSQPNFLVAT IESHNSISAGDALRLIYERHVIHGDFVLISGDTVSNMSLTQALQEHKERRKKDANAIM TMVVKQSKPSPITQQSRLGTDELFMAINPDTKQLLCYEDKAEYSKGFISLDKTLIADN PSTVLHNDKQDCYIDICSEEVLSLFTDNFDYQHLRRHFVKGLLVDDIMGYKIFTHEIH SSYAARIDNFRSYDTISKDIIQRWTYPFVPDVLCGNSAIRVERRGTYRASEITLSRSA QIGPFIVIGQGTEIGNDTKISHSVIGEGCTIGSNVTIEGSYIWNNVTIEDGCELRHAI VCDGVTMKSGAVLEPGVVLSFKVVVGQQFVVPAYSMVSLLQQPTQQDSDEELEYADSS SGNVELPSAKLNGDITSDLSETRHGPTSELGTGGVGYIWSIFEGGHDEEWRHSVAPIP TDKLAKIMLDKDEDEELLTQDGNVLSPSGELKSDSDANDSEDGDNEGSRDDYVSFEKE VEATFLRAVHENVKVDHVILEVNALRLSYNMASVDCAGAIFYSMMKLAVESPHSSSSE LHRNAADVITTWQNLLKSFLHDIDEEIEVILKFEEICLESAKEFSPLFAQILHLLYDK DILEEDAILRWADEKEGADESDKVFVQRAEKFLQWLREAEEEED" CDS join(35787127..35787264,35787359..35787589, 35788380..35788694,35789450..35789557,35790253..35790439, 35790620..35790882,35791632..35791761,35793270..35793334, 35793629..35793889,35793965..35794041,35794609..35794700, 35797022..35797104,35797731..35797802,35798258..35798383, 35798488..35798520) /locus_tag="TCM_025971" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Trimeric LpxA-like enzyme isoform 1" /protein_id="EOY10660.1" /db_xref="Phytozome:GSVIVT01026774001" /db_xref="TAIR:AT2G34970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O64760" /translation="MGAQKKGATARVSEDPEELARHPLQAILLADSFTTKFRPITLER PKVLLPLANIPMIDYTLAWLESAGVEEVFVFCCAHSKQVIDYLESSDWSSQPNFLVAT IESHNSISAGDALRLIYERHVIHGDFVLISGDTVSNMSLTQALQEHKERRKKDANAIM TMVVKQSKPSPITQQSRLGTDELFMAINPDTKQLLCYEDKAEYSKGFISLDKTLIADN PSTVLHNDKQDCYIDICSEEVLSLFTDNFDYQHLRRHFVKGLLVDDIMGYKIFTHEIH SSYAARIDNFRSYDTISKDIIQRWTYPFVPDVLCGNSAIRVERRGTYRASEITLSRSA QIGPFIVIGQGTEIGNDTKISHSVIGEGCTIGSNVTIEGSYIWNNVTIEDGCELRHAI VCDGVTMKSGAVLEPGVVLSFKVVVGQQFVVPAYSMVSLLQQPTQQDSDEELEYADSS SGNVELPSAKLNGDITSDLSETRHGPTSELGTGGVGYIWSIFEGGHDEEWRHSVAPIP TDKLAKIMLDKDEDEELLTQDGNVLSPSGELKSDSDANDSEDGDNEGSRDDYVSFEKE VEATFLRAVHENVKVDHVILEVNALRLSYNMASVDCAGAIFYSMMKLAVESPHSSSSE LHRNAADVITTWQNLLKSFLHDIDEEIEVILKFEEICLESAKEFSPLFAQILHLLYDK DILEEDAILRWADEKEGADESDKVFVQRAEKFLQWLREAEEEED" CDS join(35787127..35787264,35787359..35787589, 35788380..35788694,35789450..35789557,35790253..35790439, 35790620..35790882,35791632..35791761,35793270..35793334, 35793629..35793889,35793965..35794041,35794609..35794700, 35797022..35797104,35797731..35797802,35798258..35798383, 35798488..35798520) /locus_tag="TCM_025971" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Trimeric LpxA-like enzyme isoform 1" /protein_id="EOY10662.1" /db_xref="Phytozome:GSVIVT01026774001" /db_xref="TAIR:AT2G34970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O64760" /translation="MGAQKKGATARVSEDPEELARHPLQAILLADSFTTKFRPITLER PKVLLPLANIPMIDYTLAWLESAGVEEVFVFCCAHSKQVIDYLESSDWSSQPNFLVAT IESHNSISAGDALRLIYERHVIHGDFVLISGDTVSNMSLTQALQEHKERRKKDANAIM TMVVKQSKPSPITQQSRLGTDELFMAINPDTKQLLCYEDKAEYSKGFISLDKTLIADN PSTVLHNDKQDCYIDICSEEVLSLFTDNFDYQHLRRHFVKGLLVDDIMGYKIFTHEIH SSYAARIDNFRSYDTISKDIIQRWTYPFVPDVLCGNSAIRVERRGTYRASEITLSRSA QIGPFIVIGQGTEIGNDTKISHSVIGEGCTIGSNVTIEGSYIWNNVTIEDGCELRHAI VCDGVTMKSGAVLEPGVVLSFKVVVGQQFVVPAYSMVSLLQQPTQQDSDEELEYADSS SGNVELPSAKLNGDITSDLSETRHGPTSELGTGGVGYIWSIFEGGHDEEWRHSVAPIP TDKLAKIMLDKDEDEELLTQDGNVLSPSGELKSDSDANDSEDGDNEGSRDDYVSFEKE VEATFLRAVHENVKVDHVILEVNALRLSYNMASVDCAGAIFYSMMKLAVESPHSSSSE LHRNAADVITTWQNLLKSFLHDIDEEIEVILKFEEICLESAKEFSPLFAQILHLLYDK DILEEDAILRWADEKEGADESDKVFVQRAEKFLQWLREAEEEED" CDS join(35787127..35787264,35787359..35787589, 35788380..35788694,35789450..35789557,35790253..35790439, 35790620..35790882,35791632..35791761,35793273..35793334, 35793629..35793889,35793965..35794041,35794609..35794700, 35797022..35797104,35797731..35797802,35798258..35798383, 35798488..35798520) /locus_tag="TCM_025971" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Trimeric LpxA-like enzyme isoform 3" /protein_id="EOY10661.1" /db_xref="Phytozome:GSVIVT01026774001" /db_xref="TAIR:AT2G34970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O64760" /translation="MGAQKKGATARVSEDPEELARHPLQAILLADSFTTKFRPITLER PKVLLPLANIPMIDYTLAWLESAGVEEVFVFCCAHSKQVIDYLESSDWSSQPNFLVAT IESHNSISAGDALRLIYERHVIHGDFVLISGDTVSNMSLTQALQEHKERRKKDANAIM TMVVKQSKPSPITQQSRLGTDELFMAINPDTKQLLCYEDKAEYSKGFISLDKTLIADN PSTVLHNDKQDCYIDICSEEVLSLFTDNFDYQHLRRHFVKGLLVDDIMGYKIFTHEIH SSYAARIDNFRSYDTISKDIIQRWTYPFVPDVLCGNSAIRVERRGTYRASEITLSRSA QIGPFIVIGQGTEIGNDTKISHSVIGEGCTIGSNVTIEGSYIWNNVTIEDGCELRHAI VCDGVTMKSGAVLEPGVVLSFKVVVGQQFVVPAYSMVSLLQQPTQQDSDEELEYADSS SGNVELPSKLNGDITSDLSETRHGPTSELGTGGVGYIWSIFEGGHDEEWRHSVAPIPT DKLAKIMLDKDEDEELLTQDGNVLSPSGELKSDSDANDSEDGDNEGSRDDYVSFEKEV EATFLRAVHENVKVDHVILEVNALRLSYNMASVDCAGAIFYSMMKLAVESPHSSSSEL HRNAADVITTWQNLLKSFLHDIDEEIEVILKFEEICLESAKEFSPLFAQILHLLYDKD ILEEDAILRWADEKEGADESDKVFVQRAEKFLQWLREAEEEED" CDS join(35787127..35787264,35787359..35787589, 35788380..35788694,35789450..35789557,35790253..35790439, 35790620..35790882,35791632..35791761,35793270..35793334, 35793629..35793889,35793965..35794041,35794609..35794700, 35797022..35797104,35797731..35797802,35798258..35798434) /locus_tag="TCM_025971" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Trimeric LpxA-like enzyme isoform 5" /protein_id="EOY10663.1" /db_xref="Phytozome:GSVIVT01026774001" /db_xref="TAIR:AT2G34970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O64760" /translation="MGAQKKGATARVSEDPEELARHPLQAILLADSFTTKFRPITLER PKVLLPLANIPMIDYTLAWLESAGVEEVFVFCCAHSKQVIDYLESSDWSSQPNFLVAT IESHNSISAGDALRLIYERHVIHGDFVLISGDTVSNMSLTQALQEHKERRKKDANAIM TMVVKQSKPSPITQQSRLGTDELFMAINPDTKQLLCYEDKAEYSKGFISLDKTLIADN PSTVLHNDKQDCYIDICSEEVLSLFTDNFDYQHLRRHFVKGLLVDDIMGYKIFTHEIH SSYAARIDNFRSYDTISKDIIQRWTYPFVPDVLCGNSAIRVERRGTYRASEITLSRSA QIGPFIVIGQGTEIGNDTKISHSVIGEGCTIGSNVTIEGSYIWNNVTIEDGCELRHAI VCDGVTMKSGAVLEPGVVLSFKVVVGQQFVVPAYSMVSLLQQPTQQDSDEELEYADSS SGNVELPSAKLNGDITSDLSETRHGPTSELGTGGVGYIWSIFEGGHDEEWRHSVAPIP TDKLAKIMLDKDEDEELLTQDGNVLSPSGELKSDSDANDSEDGDNEGSRDDYVSFEKE VEATFLRAVHENVKVDHVILEVNALRLSYNMASVDCAGAIFYSMMKLAVESPHSSSSE LHRNAADVITTWQNLLKSFLHDIDEEIEVILKFEEICLESAKEFSPLFAQILHLLYDK DILEEDAILRWADEKEGADESDKVFVQRAEKFLQVRNELIMSIRVCIWLL" CDS join(35787127..35787264,35787359..35787589, 35788380..35788694,35789450..35789557,35790253..35790439, 35790620..35790882,35791632..35791761,35793270..35793334, 35793629..35793889,35793965..35794041,35794609..35794700, 35797022..35797104,35797731..35797802,35798283..35798291) /locus_tag="TCM_025971" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Trimeric LpxA-like enzyme isoform 6" /protein_id="EOY10664.1" /db_xref="Phytozome:GSVIVT01026774001" /db_xref="TAIR:AT2G34970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O64760" /translation="MGAQKKGATARVSEDPEELARHPLQAILLADSFTTKFRPITLER PKVLLPLANIPMIDYTLAWLESAGVEEVFVFCCAHSKQVIDYLESSDWSSQPNFLVAT IESHNSISAGDALRLIYERHVIHGDFVLISGDTVSNMSLTQALQEHKERRKKDANAIM TMVVKQSKPSPITQQSRLGTDELFMAINPDTKQLLCYEDKAEYSKGFISLDKTLIADN PSTVLHNDKQDCYIDICSEEVLSLFTDNFDYQHLRRHFVKGLLVDDIMGYKIFTHEIH SSYAARIDNFRSYDTISKDIIQRWTYPFVPDVLCGNSAIRVERRGTYRASEITLSRSA QIGPFIVIGQGTEIGNDTKISHSVIGEGCTIGSNVTIEGSYIWNNVTIEDGCELRHAI VCDGVTMKSGAVLEPGVVLSFKVVVGQQFVVPAYSMVSLLQQPTQQDSDEELEYADSS SGNVELPSAKLNGDITSDLSETRHGPTSELGTGGVGYIWSIFEGGHDEEWRHSVAPIP TDKLAKIMLDKDEDEELLTQDGNVLSPSGELKSDSDANDSEDGDNEGSRDDYVSFEKE VEATFLRAVHENVKVDHVILEVNALRLSYNMASVDCAGAIFYSMMKLAVESPHSSSSE LHRNAADVITTWQNLLKSFLHDIDEEIEVILKFEEICLESAKEFSPLFAQTF" CDS join(35787127..35787264,35787359..35787589, 35788380..35788694,35789450..35789557,35790253..35790439, 35790620..35790882,35791632..35791761,35793270..35793334, 35793629..35793889,35793965..35794027,35794609..35794692) /locus_tag="TCM_025971" /note="encoded by transcript variant 7; alternatively spliced" /codon_start=1 /product="Trimeric LpxA-like enzyme isoform 7" /protein_id="EOY10665.1" /db_xref="Phytozome:GSVIVT01026774001" /db_xref="TAIR:AT2G34970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O64760" /translation="MGAQKKGATARVSEDPEELARHPLQAILLADSFTTKFRPITLER PKVLLPLANIPMIDYTLAWLESAGVEEVFVFCCAHSKQVIDYLESSDWSSQPNFLVAT IESHNSISAGDALRLIYERHVIHGDFVLISGDTVSNMSLTQALQEHKERRKKDANAIM TMVVKQSKPSPITQQSRLGTDELFMAINPDTKQLLCYEDKAEYSKGFISLDKTLIADN PSTVLHNDKQDCYIDICSEEVLSLFTDNFDYQHLRRHFVKGLLVDDIMGYKIFTHEIH SSYAARIDNFRSYDTISKDIIQRWTYPFVPDVLCGNSAIRVERRGTYRASEITLSRSA QIGPFIVIGQGTEIGNDTKISHSVIGEGCTIGSNVTIEGSYIWNNVTIEDGCELRHAI VCDGVTMKSGAVLEPGVVLSFKVVVGQQFVVPAYSMVSLLQQPTQQDSDEELEYADSS SGNVELPSAKLNGDITSDLSETRHGPTSELGTGGVGYIWSIFEGGHDEEWRHSVAPIP TDKLAKIMLDKDEDEELLTQDGNVLSPSGELKSDSDANDSEDGDNEGSRDDYVSFEKE VEATFLRAVHENVKVDHVILEIVLQHGICGLCWSNILLNDEIGSRIST" CDS join(35787127..35787264,35787359..35787589, 35788380..35788694,35789450..35789557,35790253..35790439, 35790620..35790882,35791632..35791761,35793270..35793334, 35793629..35793889,35793965..35794027,35794609..35794692) /locus_tag="TCM_025971" /note="encoded by transcript variant 8; alternatively spliced" /codon_start=1 /product="Trimeric LpxA-like enzyme isoform 7" /protein_id="EOY10666.1" /db_xref="Phytozome:GSVIVT01026774001" /db_xref="TAIR:AT2G34970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O64760" /translation="MGAQKKGATARVSEDPEELARHPLQAILLADSFTTKFRPITLER PKVLLPLANIPMIDYTLAWLESAGVEEVFVFCCAHSKQVIDYLESSDWSSQPNFLVAT IESHNSISAGDALRLIYERHVIHGDFVLISGDTVSNMSLTQALQEHKERRKKDANAIM TMVVKQSKPSPITQQSRLGTDELFMAINPDTKQLLCYEDKAEYSKGFISLDKTLIADN PSTVLHNDKQDCYIDICSEEVLSLFTDNFDYQHLRRHFVKGLLVDDIMGYKIFTHEIH SSYAARIDNFRSYDTISKDIIQRWTYPFVPDVLCGNSAIRVERRGTYRASEITLSRSA QIGPFIVIGQGTEIGNDTKISHSVIGEGCTIGSNVTIEGSYIWNNVTIEDGCELRHAI VCDGVTMKSGAVLEPGVVLSFKVVVGQQFVVPAYSMVSLLQQPTQQDSDEELEYADSS SGNVELPSAKLNGDITSDLSETRHGPTSELGTGGVGYIWSIFEGGHDEEWRHSVAPIP TDKLAKIMLDKDEDEELLTQDGNVLSPSGELKSDSDANDSEDGDNEGSRDDYVSFEKE VEATFLRAVHENVKVDHVILEIVLQHGICGLCWSNILLNDEIGSRIST" mobile_element 35795053..35795097 /note="source:INTACT599_F268_scaffold_9-int 1804 1850" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(35796084..35796360) /note="source:scaffold_9_CACTA_0943 5858 6177" /mobile_element_type="transposon:TIR/CACTA" mobile_element 35796184..35796359 /note="source:scaffold_6_CACTA_0702 1 176" /mobile_element_type="transposon:TIR/CACTA" gene complement(35798683..35800262) /locus_tag="TCM_025972" /note="dbxref CacaoGD:Thecc1EG025972" mRNA complement(join(35798683..35799059,35799597..35799745, 35799835..35800262)) /locus_tag="TCM_025972" /product="Uncharacterized protein" /note="quality class is strong-utrpoor, express is strong, homology is none, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc465t3" CDS complement(join(35798966..35799059,35799597..35799706)) /locus_tag="TCM_025972" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10667.1" /translation="MPPPGWGPPPGGPPGPPGICGCFDFLCGGICRLISSCFYVLCCC CIFESCCGPMFGGPPGPPGPRPF" gene <35800807..35803711 /locus_tag="TCM_025973" /note="dbxref CacaoGD:Thecc1EG025973" mRNA join(<35800807..35801014,35801113..35801163, 35801430..35801481,35802013..35802071,35803356..35803711) /locus_tag="TCM_025973" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29950.m001157" /inference="similar to AA sequence:Phytozome:POPTR_0001s06030.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9705t3; inference alignment:Newbler:10:TSA:cgbaB_g14757t00001" CDS join(<35800808..35801014,35801113..35801163, 35801430..35801481,35802013..35802071,35803356..35803511) /locus_tag="TCM_025973" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY10669.1" /db_xref="Phytozome:POPTR_0001s06030.1" /db_xref="TAIR:AT3G04040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LDB3" /translation="KTPLHKTLRTKSLKLRVSGASCGGVLDLVSETLKKIIIINKRGE NAMANSNPRTNLRCHHCAGPLSKEMETSEWTVAPLVRDSFSMIGSAVGGTTSAFYGFN HVMPLVRRWVKGPMWVHFLIGVVLFQPLLNLHLRLTVLHSHLLHCLHLHRKIRCISLG LLILCNYIYSFLFS" mRNA join(35800829..35801014,35801113..35801163, 35801430..35801481,35802013..35802071,35802372..35802467, 35802562..35802607,35803356..35803708) /locus_tag="TCM_025973" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29950.m001157" /inference="similar to AA sequence:Phytozome:POPTR_0001s06030.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaB_g14757t00001" CDS join(35800946..35801014,35801113..35801163, 35801430..35801481,35802013..35802071,35802372..35802467, 35802562..35802607,35803356..35803483) /locus_tag="TCM_025973" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY10668.1" /db_xref="Phytozome:POPTR_0001s06030.1" /db_xref="TAIR:AT5G18250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FK46" /translation="MANSNPRTNLRCHHCAGPLSKEMETSEWTVAPLVRDSFSMIGSA VGGTTSAFYGFNHVMPLVRRWVKGPMWVHFLIGVNTFSFSCGAACLSRTIWFMAVPAG SPLTFLVAPPVIVFSSACAGLAGGAVPALAQLASSSYRAAFSSSSLPPSSQEDKMHKS RTSNTL" mobile_element 35803979..35804236 /note="source:scaffold_4_CACTA_0482 5984 6267" /mobile_element_type="transposon:TIR/CACTA" gene 35804277..35810293 /locus_tag="TCM_025974" /note="dbxref CacaoGD:Thecc1EG025974" mRNA join(35804277..35804721,35804837..35804950, 35805152..35805247,35805525..35805764,35806125..35806309, 35807184..35807511,35807602..35807706,35807798..35807899, 35808005..35808062,35808156..35808224,35808933..35809020, 35809299..35809360,35809471..35809522,35809601..35809688, 35809785..35810175) /locus_tag="TCM_025974" /product="Glucosidase II beta subunit, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29950.m001160" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038627t2" /inference="similar to AA sequence:Phytozome:GSVIVT01025503001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9697t8" CDS join(35804604..35804721,35804837..35804950, 35805152..35805247,35805525..35805764,35806125..35806309, 35807184..35807511,35807602..35807706,35807798..35807899, 35808005..35808062,35808156..35808224,35808933..35809020, 35809299..35809360,35809471..35809522,35809601..35809663) /locus_tag="TCM_025974" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG038627t2" /codon_start=1 /product="Glucosidase II beta subunit, putative isoform 1" /protein_id="EOY10670.1" /db_xref="Phytozome:GSVIVT01025503001" /db_xref="TAIR:AT5G56360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SHI5" /translation="MKLTLSFISLSLTISSLIIPSHASSSSLPSNSFLGIAPQDEDYF KGEIIKCKNGSKTFTKTQLNDDFCDCSDGTDEPGTSACPQGKFYCRNAGHSSSLLFSS RVNDGICDCCDGSDEYDGKVKCPNTCWEAGKVARDKLKKKIEMYHKGVALRREENKQA KQAIARDREELLALENEKDVLENLVKQLEGQIQKLEQEEHLEKEEKMKEASNEKVEKE KSETEEKVDSQKEPLKTSDEEKMGLSWKSPSNQNEKDEFQSTEGLSREELGRLVASRW TGKKTEDQVEEIDTAKRDYVGNREKEESAHDEHSINNALQFNENTQKHHEKGRNDAGD EESVADDVGSSSTHYNIRLEDHENSSDIATPSHQSWLVKIQETAQNILQSVNFYPTPV PNLDANQVRNEYNNYTTRLHDIESRISSLTEKVKYDFGIDNEFYLFYDRCFESKQDKY VYKVCPFKHAIQEEGRSETRLGNWEKFGSSYRMMLFSNGDGCWNGPDRSLEVKLRCGL KTELTSVDEPSRCEYVALMYTPALCLEEKLKELKQKLESMNREQPWSHDEL" mRNA join(<35804616..35804721,35804837..35804950, 35805152..35805247,35805525..35805764,35806125..35806309, 35807184..35807511,35807602..35807706,35807798..35807899, 35808005..35808062,35808156..35808224,35808933..35809020, 35809299..35809360,35809471..35809522,35809613..35809688, 35809831..35810293) /locus_tag="TCM_025974" /product="Glucosidase II beta subunit, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:29950.m001160" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038627t2" /inference="similar to AA sequence:Phytozome:GSVIVT01025503001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9697t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9697t8; inference alignment:Newbler:10:TSA:cgbaP2_g10830t00001" mRNA join(<35804616..35804721,35804837..35804950, 35805152..35805247,35805525..35805764,35806125..35806309, 35807184..35807511,35807602..35807706,35807798..35807899, 35808156..35808224,35808933..35809020,35809299..35809360, 35809471..35809522,35809601..35809688,35809785..35810293) /locus_tag="TCM_025974" /product="Glucosidase II beta subunit, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:29950.m001160" /inference="similar to AA sequence:Phytozome:GSVIVT01025503001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9697t6; inference alignment:Newbler:10:TSA:cgbaP2_g10830t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9697t8" CDS join(<35804616..35804721,35804837..35804950, 35805152..35805247,35805525..35805764,35806125..35806309, 35807184..35807511,35807602..35807706,35807798..35807899, 35808005..35808062,35808156..35808224,35808933..35809020, 35809299..35809360,35809471..35809522,35809613..35809663) /locus_tag="TCM_025974" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG038627t2" /codon_start=1 /product="Glucosidase II beta subunit, putative isoform 2" /protein_id="EOY10671.1" /db_xref="Phytozome:GSVIVT01025503001" /db_xref="TAIR:AT5G56360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SHI5" /translation="LSFISLSLTISSLIIPSHASSSSLPSNSFLGIAPQDEDYFKGEI IKCKNGSKTFTKTQLNDDFCDCSDGTDEPGTSACPQGKFYCRNAGHSSSLLFSSRVND GICDCCDGSDEYDGKVKCPNTCWEAGKVARDKLKKKIEMYHKGVALRREENKQAKQAI ARDREELLALENEKDVLENLVKQLEGQIQKLEQEEHLEKEEKMKEASNEKVEKEKSET EEKVDSQKEPLKTSDEEKMGLSWKSPSNQNEKDEFQSTEGLSREELGRLVASRWTGKK TEDQVEEIDTAKRDYVGNREKEESAHDEHSINNALQFNENTQKHHEKGRNDAGDEESV ADDVGSSSTHYNIRLEDHENSSDIATPSHQSWLVKIQETAQNILQSVNFYPTPVPNLD ANQVRNEYNNYTTRLHDIESRISSLTEKVKYDFGIDNEFYLFYDRCFESKQDKYVYKV CPFKHAIQEEGRSETRLGNWEKFGSSYRMMLFSNGDGCWNGPDRSLEVKLRCGLKTEL TSVDEPSRCEYVALMYTPALCLEEKLKKLESMNREQPWSHDEL" CDS join(<35804616..35804721,35804837..35804950, 35805152..35805247,35805525..35805764,35806125..35806309, 35807184..35807511,35807602..35807706,35807798..35807899, 35808156..35808224,35808933..35808967) /locus_tag="TCM_025974" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Glucosidase II beta subunit, putative isoform 3" /protein_id="EOY10672.1" /db_xref="Phytozome:GSVIVT01025503001" /translation="LSFISLSLTISSLIIPSHASSSSLPSNSFLGIAPQDEDYFKGEI IKCKNGSKTFTKTQLNDDFCDCSDGTDEPGTSACPQGKFYCRNAGHSSSLLFSSRVND GICDCCDGSDEYDGKVKCPNTCWEAGKVARDKLKKKIEMYHKGVALRREENKQAKQAI ARDREELLALENEKDVLENLVKQLEGQIQKLEQEEHLEKEEKMKEASNEKVEKEKSET EEKVDSQKEPLKTSDEEKMGLSWKSPSNQNEKDEFQSTEGLSREELGRLVASRWTGKK TEDQVEEIDTAKRDYVGNREKEESAHDEHSINNALQFNENTQKHHEKGRNDAGDEESV ADDVGSSSTHYNIRLEDHENSSDIATPSHQSWLVKIQETAQNILQSVNFYPTPVPNLD ANQVRNEYNNYTTRLHDIESRISSLTEKVKYDFGMCIKFVHLNMQYKRKAGVKPDWAT GRSLGVHIE" mRNA join(35805567..35805764,35806125..35806309, 35807184..35807511,35807602..35807706,35807798..35807899, 35808005..35808062,35808156..35808224,35808933..35809020, 35809299..35809360,35809471..35809522,35809601..35809688, 35809831..35810281) /locus_tag="TCM_025974" /product="Glucosidase II beta subunit, putative isoform 4" /inference="alignment:exonerate- protein:2:ricco:29950.m001160" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038627t3" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1167t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9697t8; inference alignment:Newbler:10:TSA:cgbaP2_g10830t00001" mRNA join(35805567..35805764,35806125..35806309, 35807184..35807511,35807602..35807706,35807798..35807899, 35808005..35808062,35808156..35808224,35808933..35809020, 35809299..35809360,35809471..35809522,35809613..35809688, 35809785..35810281) /locus_tag="TCM_025974" /product="Glucosidase II beta subunit, putative isoform 5" /inference="alignment:exonerate- protein:2:ricco:29950.m001160" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038627t3" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1167t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9697t8; inference alignment:Newbler:10:TSA:cgbaP2_g10830t00001" CDS join(35805629..35805764,35806125..35806309, 35807184..35807511,35807602..35807706,35807798..35807899, 35808005..35808062,35808156..35808224,35808933..35809020, 35809299..35809360,35809471..35809522,35809601..35809663) /locus_tag="TCM_025974" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG038627t3" /codon_start=1 /product="Glucosidase II beta subunit, putative isoform 4" /protein_id="EOY10673.1" /db_xref="TAIR:AT5G56360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SHI5" /translation="MYHKGVALRREENKQAKQAIARDREELLALENEKDVLENLVKQL EGQIQKLEQEEHLEKEEKMKEASNEKVEKEKSETEEKVDSQKEPLKTSDEEKMGLSWK SPSNQNEKDEFQSTEGLSREELGRLVASRWTGKKTEDQVEEIDTAKRDYVGNREKEES AHDEHSINNALQFNENTQKHHEKGRNDAGDEESVADDVGSSSTHYNIRLEDHENSSDI ATPSHQSWLVKIQETAQNILQSVNFYPTPVPNLDANQVRNEYNNYTTRLHDIESRISS LTEKVKYDFGIDNEFYLFYDRCFESKQDKYVYKVCPFKHAIQEEGRSETRLGNWEKFG SSYRMMLFSNGDGCWNGPDRSLEVKLRCGLKTELTSVDEPSRCEYVALMYTPALCLEE KLKELKQKLESMNREQPWSHDEL" CDS join(35805629..35805764,35806125..35806309, 35807184..35807511,35807602..35807706,35807798..35807899, 35808005..35808062,35808156..35808224,35808933..35809020, 35809299..35809360,35809471..35809522,35809613..35809663) /locus_tag="TCM_025974" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG038627t3" /codon_start=1 /product="Glucosidase II beta subunit, putative isoform 5" /protein_id="EOY10674.1" /db_xref="TAIR:AT5G56360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SHI5" /translation="MYHKGVALRREENKQAKQAIARDREELLALENEKDVLENLVKQL EGQIQKLEQEEHLEKEEKMKEASNEKVEKEKSETEEKVDSQKEPLKTSDEEKMGLSWK SPSNQNEKDEFQSTEGLSREELGRLVASRWTGKKTEDQVEEIDTAKRDYVGNREKEES AHDEHSINNALQFNENTQKHHEKGRNDAGDEESVADDVGSSSTHYNIRLEDHENSSDI ATPSHQSWLVKIQETAQNILQSVNFYPTPVPNLDANQVRNEYNNYTTRLHDIESRISS LTEKVKYDFGIDNEFYLFYDRCFESKQDKYVYKVCPFKHAIQEEGRSETRLGNWEKFG SSYRMMLFSNGDGCWNGPDRSLEVKLRCGLKTELTSVDEPSRCEYVALMYTPALCLEE KLKKLESMNREQPWSHDEL" gene 35810229..35816467 /locus_tag="TCM_025975" /note="dbxref CacaoGD:Thecc1EG025975" mRNA join(35810229..35810808,35814129..35814373, 35814933..35815394,35815501..35816467) /locus_tag="TCM_025975" /product="Pyruvate kinase family protein" /inference="alignment:exonerate- protein:2:ricco:29950.m001161" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038629t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s05690.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.59 coverage" mobile_element 35810844..35810908 /note="source:CACAO_M_E44848_F172_scaffold_6 1894 1958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(35810854..35810920) /note="source:CACAO_M_S_E85757_F233_scaffold_7 1562 1627" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 35812848..35813733 /note="source:INTACT639F_F363_scaffold_5-int 7469 8362" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(35813734..35813836) /note="source:scaffold_4_CACTA_0511 2485 3361" /mobile_element_type="transposon:TIR/CACTA" CDS join(35814131..35814373,35814933..35815394, 35815501..35816298) /locus_tag="TCM_025975" /note="paralog of Thecc1EG038629t1" /codon_start=1 /product="Pyruvate kinase family protein" /protein_id="EOY10675.1" /db_xref="Phytozome:POPTR_0013s05690.1" /db_xref="TAIR:AT5G56350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5NBQ0" /translation="MENVILTGVEGMVRPKTKIVCTLGPASRSVEMIEKLLKAGMNVA RFNFSHGSHAYHQETLDNLRTAMNNTCIPCAVMLDTKGPEIRTGFLRDGKPIQLTQGE KITITTDYSIKGDENLISMSYKKLAEDLKPGSVILCSDGTITFTVLACDKELGLVHCR CENSAVLGERKNVNLPGVVVDLPTLTEKDKEDILQWGVPNKIDIIALSFVRKGSDLVE VRKLLGEHGNSIILMSKVENQEGVANFDDILANSDAFMVARGDLGMEIPIEKIFLAQK MMIMKANILGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGS YPDLAVQTMARICKEAENFINYGDLFKRIMETASTPMSPLESLASSAVRTGNCIKASI ILVLTRTGTTAKLVAKYRPSMPILSMIIPEITTDSLDWSCSDEAPARHCLIFRGLIPV LSSGSAKASYSESIEETTKFALQHAKERGLCKPGDSIVALHPSVIKILTV" gene complement(35816750..35818827) /locus_tag="TCM_025976" /note="dbxref CacaoGD:Thecc1EG025976" mRNA complement(join(35816750..35818073,35818710..35818827)) /locus_tag="TCM_025976" /product="RING/U-box superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:29950.m001162" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038630t4" /inference="similar to AA sequence:Phytozome:POPTR_0013s05700.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc2523t1" CDS complement(35817014..35818060) /locus_tag="TCM_025976" /note="paralog of Thecc1EG038630t4" /codon_start=1 /product="RING/U-box superfamily protein, putative" /protein_id="EOY10676.1" /db_xref="Phytozome:POPTR_0013s05700.1" /db_xref="TAIR:AT1G55530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I601" /translation="MGDRMVGRYWCYMCSQMVNPTIEPETKCPFCETGFVEEMTSMRQ YSNDNGVDLGSMNTLSLWAPILLGLIGGLGSAQLRITGREQINDSNSQDAVEDELGRE FESLLRRRRRTSASALRMLQEMRTVAASESENSENGRERSGRMILFDPFNDEALIVQG SFGFNQGQNSTHRAASSFGDYLIGPGWDLLLRYLAENDPNRYGTPPAQKETVEAMPTV TVEDNVQCSICLEDIEIGSEAKEMPCKHKFHGGCIVPWLELHSSCPVCRYQLPSDDSK IEANVSRNSEGRVGTNDTQSGSGVGTGRRYWIPIPWPYDGLLTLPGSQNGSTSAPSSG AMPGSASAGQTEDT" gene 35819102..35825783 /locus_tag="TCM_025977" /note="dbxref CacaoGD:Thecc1EG025977" mRNA join(35819102..35819678,35822925..35823136, 35824993..35825783) /locus_tag="TCM_025977" /product="Vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01013209001" /note="quality class is medium-utrpoor, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.33 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc593t6" gene complement(35819221..35823224) /locus_tag="TCM_025978" /note="dbxref CacaoGD:Thecc1EG025978" mRNA complement(join(35819221..35820194,35821072..35821113, 35821207..35821744,35821897..35822059,35822254..35822329, 35822832..35823224)) /locus_tag="TCM_025978" /product="Germin-like protein subfamily 1 member 18" /inference="alignment:exonerate- protein:2:ricco:28830.m000226.5" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026071t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s04330.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.51 coverage" CDS join(35819656..35819678,35822925..35823136, 35824993..35825018) /locus_tag="TCM_025977" /codon_start=1 /product="Vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related" /protein_id="EOY10677.1" /translation="MGFQDMDKTLKLGLGEVRQARALVQRLGDAREPQQQATVMGPPL QKINLISCGPMAHVSDIKLIRTDTTLDLSQKAEKVKTLEGIQ" CDS complement(join(35820134..35820194,35821072..35821113, 35821207..35821744,35821897..35822059,35822254..35822329, 35822832..35822839)) /locus_tag="TCM_025978" /note="paralog of Thecc1EG026071t1" /codon_start=1 /product="Germin-like protein subfamily 1 member 18" /protein_id="EOY10678.1" /db_xref="Phytozome:POPTR_0019s04330.1" /db_xref="TAIR:AT3G05950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SFF9" /translation="MALAGFPLQLQNCVEVNEVKHWKKELHEKAAFFAMEGFKILVPI SLLVLAFSFATASDPSPLQDFCVALRDAQNGAMFSLYFLFVNGKFCKDPKLVKAEDLF FSGLNMPGNTSNQLGSKFTLVNVEQIPGLNTLGISLARIDYAPYGGLNPPHTHPRASE ILVVMEGTLYVGFVTSNPNNHLITKVLYPGDVFVFPVGLIHFQFNIGKTNAIAFAGLS SQNPGVITIANAVFGSKSRINPDVLSKAFQLDENVVRYLQSRLCKLVLVGSVMKRFYR PAKTRRDRRLPINQVGFGW" gene 35825792..35830874 /locus_tag="TCM_025979" /note="dbxref CacaoGD:Thecc1EG025979" mRNA join(35825792..35825934,35826496..35827048, 35828527..35828585,35828676..35828752,35829528..35829589, 35830481..35830874) /locus_tag="TCM_025979" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025985t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc6070t1" CDS join(35826972..35827048,35828527..35828585, 35828676..35828752,35829528..35829589,35830481..35830715) /locus_tag="TCM_025979" /note="paralog of Thecc1EG025985t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10679.1" /translation="MLFMMKTKLSLSRPYHVNVHDVRPQSFYDERDCKDSCKIRARQA EEKIRYENTAIRDGNDKRGTKRQGREKVIWESRQEELSIFEQGNQQSRLLQAEVMEAD LAKLEVQMRDSAETLMAAREAADLTESEFALLIRRRNGLMDNLMRRKNKFLKMKGIEA FLMLKLGFL" mobile_element complement(35829980..35830226) /note="source:INTACT383F_F354_scaffold_3-int 2346 2608" /mobile_element_type="retrotransposon:LTR/Unclassified" gene 35831612..35845312 /locus_tag="TCM_025980" /note="dbxref CacaoGD:Thecc1EG025980" mRNA join(35831612..35831954,35834593..35834610, 35835414..35835475,35836611..35836822,35837800..35837944, 35838329..35838413,35845276..35845312) /locus_tag="TCM_025980" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.20 coverage" mobile_element 35832574..35832727 /note="source:scaffold_4_CACTA_0482 7597 7762" /mobile_element_type="transposon:TIR/CACTA" CDS join(35834594..35834610,35835414..35835475, 35836611..35836822,35837800..35837944,35838329..35838408) /locus_tag="TCM_025980" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10680.1" /translation="MASLRLSYGNHGRKNSSFSSTETSSLGRCKQINGSSPKVVGKKL CLQSRPQQVKLTKTDLVKLKVQMRDSAESLMAAQKAANLTEAEFAQMIMRRNEVGILS YAALNKAFLSWQLSFGVAGSYSGNPGWSDGIQFLYGDCLYPRSGMVNSRIIHYVLLLR NNDILVVNDVT" mobile_element complement(35839210..35840159) /note="source:CACAO_on_E545_scaffold_5 1 957" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(35840333..35840397) /note="source:scaffold_5_CACTA_0596 7029 7089" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(35840354..35840416) /note="source:CACAO_M_E22186_F143_scaffold_3 9935 9998" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 35840398..35840469 /note="source:CACAO_M_S_E52027_F3_scaffold_5 3928 4021" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 35843103..35843301 /note="source:CACAO_on_E329_A_scaffold_147 4169 4382" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 35843354..35843559 /note="source:CACAO_on_E329_A_scaffold_147 4207 4402" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(35843813..35843910) /note="source:CACAO_PIF_E119_scaffold_3 7034 7146" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 35843946..35843994 /note="source:scaffold_4_CACTA_0511 3174 3221" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(35845708..35846697) /note="source:CACAO_on_E459_scaffold_2 1563 2563" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(35847025..35847144) /note="source:scaffold_2_CACTA_0248 10011 10130" /mobile_element_type="transposon:TIR/CACTA" gene complement(35848061..35852559) /locus_tag="TCM_025982" /note="dbxref CacaoGD:Thecc1EG025982" mRNA complement(join(35848061..35849097,35849743..35850509, 35850711..35851648,35851805..35852559)) /locus_tag="TCM_025982" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma02g25150.1.7" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025131t1" /inference="similar to AA sequence:Phytozome:Glyma10g13910.1" /note="quality class is medium-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.39 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc4Loc12t1_G3" CDS complement(join(35849050..35849097,35849743..35850509, 35850711..35851648,35851805..35852538)) /locus_tag="TCM_025982" /note="paralog of Thecc1EG025131t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10681.1" /db_xref="Phytozome:Glyma10g13910.1" /translation="MDGFSGYNQIKMAPEDMEKTTFVTMWGTFCYKVMPFGLKNAGAT YQRAMVALFHDMMHKEIEVYVDDMIAKSHTERDHTVNLKKLFERLRKFQLKLNPAKCT FGVTSGKLLGFIVSEKGIEVDPDKIRAIQELPPPKTQKEVRGFFGRLNYIARFISQLT CKCDPIFKLLRKRDPGEWNEECQIAFNKIKEYLTNPPVLMPPTVGKPLILYLTVNKDS MGCVLGQHDETGKKERAVYYLSKKFMEIARWQVLLSEYDIVYVSQKSIKGSAIADFLA DRANEDYESVSFDFPDEDLMAVLHIEKVGPNELNPWKVYFDGASNALGHGIGAVLISP NGKYYPATARLNFNCTNNMAEYEALVLGLQAAIDIKADAIDVYGDSVLVICQMKGEWE TRDPKLVPYKKLVTELSKQFKEISFNHLPREENQIADALATLAAMFKIKEAADVRPFD LEVREVSAHCLNVEEEVDGKPWYHNIMQYIKHQTYPENVTDNDKRTLRRLAMGFFLSG EVLYKRSRDQVLLRCVDVAEANKIMKEVHEGTCGAHANGHMLVRQIMRAVAIDYFTKW VEAASYANVTQKVVCKFIQKEIICRYGLPKRIITDNASNLNGAMVKDVCTKFKIKHHN STTYRPKMNGAVEAANKNIKKIVEKMTEVYKDWHEKLPFALHAYRTSVRTSTGATPYS LVYGAEAVLPVEVEIPSLRVLMETELEDAEWVRSRYEQLNLIEEKMLAALCHGQMYQR RRMRAYEKKVHPKQFREGELVLKRILPNQTDFRGKWMPNWEGPYVVKKAFSGGALILA NMDGGDLPNPINADASPEPKAKSNVKGEGT" mobile_element complement(35853286..35853724) /note="source:INTACT1330F_F382_scaffold_8-int 8302 8741" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(35853825..35854799) /note="source:INTACT1330F_F382_scaffold_8-int 7316 8289" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(35855145..35856246) /note="source:INTACT1330F_F382_scaffold_8-int 5869 6970" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(35856347..35860308) /note="source:INTACT1330F_F382_scaffold_8-int 1823 5809" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(35857185..35859534) /locus_tag="TCM_025984" /note="dbxref CacaoGD:Thecc1EG025984" mRNA complement(35857185..35859534) /locus_tag="TCM_025984" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g30350.1.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008095t1" /inference="similar to AA sequence:Phytozome:Glyma08g41350.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05858t00001_G2" CDS complement(35857398..35859311) /locus_tag="TCM_025984" /note="paralog of Thecc1EG008095t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10682.1" /db_xref="Phytozome:Glyma08g41350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2HW90" /translation="MESSWPSSSYDGIYQVTQHMASTQQSEGDCLSKDHFSSLPDRVH LDLKQNDFTDLLNIWDKWGATTRANFDRKYGHIARLLKVQVDEQLLKAIVQFWDPSYR CFVFNKVDMVPTIEEYSALLQIDLDNPDKIYWRGQKTGHRRKLAKMMGITSAEVDQNL RKKGDNECIPWSFLRSYIMKQRDTEQGQLVMALAIYGLVIFPKVLGHIEVGIIDFFEQ VVNKANPSPSILAETLRSLNYCRRKGEGRFVGCAQLLSIWIVSHFECKVDKFRKPFHP QTAPIREFCESEWPENRTKEQWISRFRELMSVEVTWRAPWMPHHPILYKCGNEPWVTL MGPWGAISYAPIMVRRQFGSEQFVPMTHRLNTLEFAYGESGFLKRIEEIAQAWKKTSR VDQGRYTDEVTTGYQIWHDQRVKDVVYPKEDALRGPVDPEPRDALLESELARKKSEAE NASWKQRYEDLQKECEKMKREVSEQRKKVRKMEGKYENLNDKFSATTSELQREIQVRE NQGNELQTHNDGLRRQVRFQQESIQLLRQEYEELEGVMTTYQQEYERLKQQSTKIQEW GESYRQAYTEKYNQMDYLVWQMREVAYKARSMAWKTNILRSQIFPVGKQEQQLIKYLD EVYSHYNKIGEYF" mobile_element complement(35861723..35862190) /note="source:INTACT52F_F339_scaffold_1-int 1 478" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(35863406..35863531) /note="source:scaffold_1_CACTA_0001 8392 8518" /mobile_element_type="transposon:TIR/CACTA" mobile_element 35863431..35864169 /note="source:CACAO_MITE61_scaffold_4 1 745" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(35864730..35864808) /note="source:scaffold_7_CACTA_0779 2929 3006" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(35869907..35870506) /note="source:CACAO_M_E4753_F17_scaffold_2 7191 7818" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 35869973..35871019 /note="source:scaffold_2_CACTA_0244 12398 13439" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(35870507..35870625) /note="source:INTACT135F_F90_scaffold_2-int 13185 13961" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(35870626..35870826) /note="source:scaffold_10_CACTA_0140 6416 7315" /mobile_element_type="transposon:TIR/CACTA" gene 35871379..35876226 /locus_tag="TCM_025985" /note="dbxref CacaoGD:Thecc1EG025985" mRNA join(35871379..35871599,35872522..35872968, 35874163..35874254,35874379..35874425,35874779..35874840, 35875359..35876226) /locus_tag="TCM_025985" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc4429t2" CDS join(35872860..35872968,35874163..35874254, 35874379..35874425,35874779..35874840,35875359..35875639) /locus_tag="TCM_025985" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10683.1" /translation="MFIYGYIFHRLRDKVKLSASIQLPTMISLLAVTPFVGRAFDWKA SITERMTRGIAKIQTKSGNIKQRKRAGMKTLKRGEARKRSYGHQGRKNFPFSSRESRS LGKSPRVVGKKLRLQSRLLQVEVMEAELAKMKVLMRDSAESLMAAREAADLSDSEFAL LIRRRNELVDNLIRRKNELLTMKGIEAFLMLKLGFL" gene 35879522..35883596 /locus_tag="TCM_025986" /note="dbxref CacaoGD:Thecc1EG025986" mRNA join(35879522..35879819,35880613..35880640, 35882199..35882272,35882912..35882985,35883096..35883596) /locus_tag="TCM_025986" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.12 coverage" gene 35879538..35880662 /locus_tag="TCM_025987" /note="dbxref CacaoGD:Thecc1EG025987" mRNA join(35879538..35879634,35879784..35880662) /locus_tag="TCM_025987" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.90 coverage" CDS join(35879566..35879634,35879784..35879921) /locus_tag="TCM_025987" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10685.1" /translation="MALNTKQSPLTTVQAQSSQIKQRKRRRLQVCCQVEVIRDEQECQ QTQRLEKNAKPLQSHQLFQQLRFL" CDS join(35879804..35879819,35880613..35880640, 35882199..35882272,35882912..35882985,35883096..35883347) /locus_tag="TCM_025986" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10684.1" /translation="MLSGGNYADVTMITCSNGSSSRIEKQKCPTYSSSNGMKIEKRPA GEEIIAQTKRSSSLPNSGLKKAKKSLKRMKVEVAEKRGETRLMMELLKEEAKAKGIAI EKIRTDNERMKRQNVLKLEKDECIRQFINHMLVIFEAEDNVLMLD" gene 35890075..35900886 /locus_tag="TCM_025989" /note="dbxref CacaoGD:Thecc1EG025989" mRNA join(35890075..35890440,35890977..35891113, 35891910..35892140,35892292..35892702) /locus_tag="TCM_025989" /product="Uncharacterized protein isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028338t1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01027t00002; inference alignment:Newbler:10:TSA:cgbaL_g01027t00002" mRNA join(35890974..35891113,35891910..35892140, 35892292..35892647,35900835..35900886) /locus_tag="TCM_025989" /product="Uncharacterized protein isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028338t1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1428t6; alternateUTRof:Thecc1EG025989t1; inference alignment:Newbler:10:TSA:cgbaL_g01027t00002; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1539t3" CDS join(35892090..35892140,35892292..35892633) /locus_tag="TCM_025989" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG028338t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY10686.1" /translation="MALFFFHRFGLNRYQNMGRRLRAMRVRLAKKRRAIRRMRQSLSA SQIAAEQIERDHERMFAAEQIERRNRRIIAENALIDQLVYDLLAELENDPLIRSAAEA IRAENLDGRNIIINQAPPPGGGRPRRRR" CDS join(35892090..35892140,35892292..35892633) /locus_tag="TCM_025989" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG028338t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY10687.1" /translation="MALFFFHRFGLNRYQNMGRRLRAMRVRLAKKRRAIRRMRQSLSA SQIAAEQIERDHERMFAAEQIERRNRRIIAENALIDQLVYDLLAELENDPLIRSAAEA IRAENLDGRNIIINQAPPPGGGRPRRRR" gene complement(35894095..35895400) /locus_tag="TCM_025990" /note="dbxref CacaoGD:Thecc1EG025990" mRNA complement(35894095..35895400) /locus_tag="TCM_025990" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS complement(35894697..35894918) /locus_tag="TCM_025990" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10688.1" /translation="MRAPSKLLACPRNHPTGPTIRGKTEEQQNTTRVTHQQHQKRSSQ NTETRLHQPSEQIDINFLTWKNPCCNEHF" mobile_element complement(35899665..35899872) /note="source:MITE_Unknow_2_23 465 678" /mobile_element_type="transposon:TIR/MITE" gene 35900319..35901148 /locus_tag="TCM_025991" /note="dbxref CacaoGD:Thecc1EG025991" mRNA join(35900319..35900384,35900538..35900880, 35901034..35901148) /locus_tag="TCM_025991" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG028338t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g03161t00002" CDS join(35900334..35900384,35900538..35900834) /locus_tag="TCM_025991" /note="paralog of Thecc1EG028338t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10689.1" /translation="MTGFFFHHFCLNRSQSMGRHLRAMRVRLARKRRAIRRMRQSLST LRIAAEQIDRRNERMIAENALIDQLVYNLLAEIENNPLIRNAFEGIDAQNLDERNQAQ LPRGGGGVDDRRE" gene 35905712..35907201 /locus_tag="TCM_025992" /note="dbxref CacaoGD:Thecc1EG025992" mRNA join(35905712..35905844,35906089..35906431, 35906614..35906736,35906920..35907201) /locus_tag="TCM_025992" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g14678t00001" CDS join(35905842..35905844,35906089..35906431, 35906614..35906736,35906920..35907068) /locus_tag="TCM_025992" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10690.1" /translation="MDPRDFIAVALEFELEMQREKKREMEESLRAAQVALRKKERGLS VRRRKTQGMRAKEAAKEKLIVDFMVFVEAVENNDLETAQKFDENAMMKAIVTMMGSNG GDGGDSGGFAGGYGDGNVTEIDVNPEEKAVMDATVATVNVGNYGGHNGGFVGDYGGIS NNLEKAQNIDKEAMMAAGIEERNSDASEGSDGGGYGACVSGNRRE" gene 35912042..35916602 /locus_tag="TCM_025993" /note="dbxref CacaoGD:Thecc1EG025993" mRNA join(35912042..35912352,35915195..35915507, 35915689..35915844,35916024..35916602) /locus_tag="TCM_025993" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026001t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.42 coverage" CDS join(35915228..35915507,35915689..35915844, 35916024..35916157) /locus_tag="TCM_025993" /note="paralog of Thecc1EG026001t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10691.1" /translation="MRALEVVLAKERERTRLMKKRLRVSQTKLKAKEGECSMLRTEKD RLLALKEEEEKLVAGFLEAEGKEYFNDQKAMINSGGGGGGKGGGFDGVYGRGINYLEN SQNLDEKAVIATVKGTNSDGSGSSHGGGNGGCGGKGGGFDGVDGGGINDLENAQNLDE EAVLATVKGTNSDGDGSSHGGGGSGGYGV" gene 35918002..35926229 /locus_tag="TCM_025994" /note="dbxref CacaoGD:Thecc1EG025994" mRNA join(35918002..35918098,35918309..35918751, 35926127..35926229) /locus_tag="TCM_025994" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025996t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2860t1" CDS join(35918096..35918098,35918309..35918749) /locus_tag="TCM_025994" /note="paralog of Thecc1EG025996t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10692.1" /translation="MDAGNVLEAMKAELEMMREEKIWMDECLAAAEIELEETKRVIEE YKDMEKLANDLLNFVLGAGGNDVHDNRQINLDEETIKALLEETVRDFAEEINKAHSRV SRPVNGGNGGRYDDGIGDQNLDGSNTDVTGGGGSSKGGNSGGRPE" mobile_element 35918913..35919023 /note="source:INTACT1232F_F375_scaffold_6-int 5 134" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(35918924..35919419) /note="source:INTACT72F_F343_scaffold_2-int 176 715" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(35919547..35919603) /note="source:INTACT799_F10_scaffold_1-int 670 729" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 35919561..35919695 /note="source:CACAO_Mutator_E39_scaffold_1 10896 11030" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(35919594..35920551) /note="source:INTACT72F_F343_scaffold_2-int 10248 10967" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 35920340..35920446 /note="source:scaffold_5_CACTA_0584 8148 8478" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(35920655..35921785) /note="source:INTACT72F_F343_scaffold_2-int 9105 10208" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 35920946..35921056 /note="source:scaffold_5_CACTA_0584 8479 8829" /mobile_element_type="transposon:TIR/CACTA" gene 35926714..36078995 /locus_tag="TCM_025995" /note="dbxref CacaoGD:Thecc1EG025995" mRNA join(35926714..35926734,35927001..35927346, 35927533..35927596,36078312..36078995) /locus_tag="TCM_025995" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025998t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1434t56" CDS join(35926732..35926734,35927001..35927346, 35927533..35927596,36078312..36078447) /locus_tag="TCM_025995" /note="paralog of Thecc1EG025998t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10693.1" /translation="MDAGNYLEAIAMRVALEWEREKTRVMKESLRDDEVALLEKALEH SMLMGKKEETLAEIELREKLIDDFMVFIGAVENNYVEIAQNFDEKAMMDATVAMLNSD GNSGGNGEGLGGAYGGHNDLDVAIEGTERDGGEGSNLKMESYRELLQGRLEIPCSFMC PLRCPLFDLTLSVLHHPTMKSR" mobile_element 35935195..35935655 /note="source:CACAO_M_E4753_F17_scaffold_2 7256 7767" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 35936331..35936471 /note="source:CACAO_M_E4753_F17_scaffold_2 7433 7572" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 35936641..35937305 /note="source:CACAO_M_E4753_F17_scaffold_2 7256 7752" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 35938772..35941764 /locus_tag="TCM_025996" /note="dbxref CacaoGD:Thecc1EG025996" mRNA join(35938772..35939210,35939421..35940362, 35941466..35941764) /locus_tag="TCM_025996" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025994t1" /note="quality class is medium-utrpoor, express is medium, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.39 coverage" CDS join(35939208..35939210,35939421..35939795) /locus_tag="TCM_025996" /note="paralog of Thecc1EG025994t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10694.1" /translation="MDAENVLEAKKAEMAMMQEEKICVEEWLTAAEIELEETKREHAK YKDMEKLANDLQDFVLEAGGNDVHDNRQINLDEDTMKALLEEAVRDFAEEMNKAHSRG CRPADGDNGGGGREGGNGGGRPE" mobile_element 35941106..35942051 /note="source:INTACT384F_F20_scaffold_3-int 11665 12580" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 35946708..35947950 /locus_tag="TCM_025998" /note="dbxref CacaoGD:Thecc1EG025998" mRNA join(35946708..35946811,35947064..35947409, 35947598..35947950) /locus_tag="TCM_025998" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025995t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02901t00002" CDS join(35946809..35946811,35947064..35947409, 35947598..35947707) /locus_tag="TCM_025998" /note="paralog of Thecc1EG025995t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10695.1" /translation="MDAGNYLEAIAMRVALEWEREKTSVMKESLRDDEVALLEKALEH SMLMGKKEETLAEIELREKLIDDFMVFVGAVENNDVEIAQTFDEKAMMDAIFAMLNSD GNSGGNGEGLGGAYGGHNDLDVAIEGTGRDGGEGSKAGGEGGSCNGDHRK" gene 35955279..35958315 /locus_tag="TCM_025999" /note="dbxref CacaoGD:Thecc1EG025999" mRNA join(35955279..35955791,35957651..35958315) /locus_tag="TCM_025999" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.58 coverage" CDS join(35955770..35955791,35957651..35957880) /locus_tag="TCM_025999" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10696.1" /translation="MKLGRIIGDGSKINFWEEKWITASFSNLFFHESLHLHLKKTRRF VILGNGPRIVGLEKLNFKEMSLVRNVSSGTASNLFFMIK" mobile_element complement(35958563..35958721) /note="source:CACAO_M_E11656_F17_scaffold_2 1411 1566" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 35958717..35959838 /note="source:CACAO_M_S_E98329_F17_scaffold_8 226 1357" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(35961231..35962686) /locus_tag="TCM_026000" /note="dbxref CacaoGD:Thecc1EG026000" mRNA complement(join(35961231..35961631,35962063..35962114, 35962307..35962362,35962534..35962686)) /locus_tag="TCM_026000" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9812t1" CDS complement(join(35962078..35962114,35962307..35962362, 35962534..35962584)) /locus_tag="TCM_026000" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10697.1" /translation="MDFIYFCPFDILLGSWKVLVGFYNYQMLKDIIAEKSFLLDEDEM HAF" gene 35963332..35965415 /locus_tag="TCM_026001" /note="dbxref CacaoGD:Thecc1EG026001" mRNA join(35963332..35963712,35963887..35964220, 35964399..35964554,35964734..35965415) /locus_tag="TCM_026001" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc4593t1" CDS join(35963401..35963712,35963887..35964220, 35964399..35964554,35964734..35964867) /locus_tag="TCM_026001" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10698.1" /translation="MKLYKNFCSNLFVHFFSMIKYIKLIFVFNLARAMVSPLSTISWS EEKRRVPQQLPKIQISSLWPCSVEVLVSLLPLFLTVTNSPRITASVLSAIISCLLNLH EMDPQGQNLVEAILLALEVALAKERDNTRLMEERLRAGQAALKAKGRERSMLTTEKDR VLALKEDGEKLVSDFLEADGKKNFDDQKAMMDVVVAMINSGGGDGGKGGGFDGFYERG INYLENAPNLNEKAVLATVKGTNSDGNDNSHGGGNGGDGRKGGGFDGVYGGPINDLEN AQILDEEAVIATAKGTNSDGNGSSHGGGNGGGYGV" gene 35973261..35984274 /locus_tag="TCM_026002" /note="dbxref CacaoGD:Thecc1EG026002" mRNA join(35973261..35973395,35981094..35981679, 35981936..35982281,35982450..35982542,35982674..35982767, 35983674..35984274) /locus_tag="TCM_026002" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046292t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.26 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1431t8" mobile_element 35973333..35973789 /note="source:CACAO_Again_on_E201_scaffold_9 1 501" /mobile_element_type="transposon:TIR/hAT" mobile_element 35980879..35981416 /note="source:CACAO_Again_on_E207_scaffold_9 1027 1574" /mobile_element_type="transposon:TIR/hAT" CDS join(35981677..35981679,35981936..35982281, 35982450..35982542,35982674..35982767,35983674..35983812) /locus_tag="TCM_026002" /note="paralog of Thecc1EG046292t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10699.1" /translation="MDAGNILEAIAVGLALEWERERTRLMKELLRNYEGALLEKALKR SMLMAKKKEMLAEIESQEKLIDDFMVFIEAVENNDVEIAQNFDEKAMMDAIVRMLNGD GNSGGNGEGFGGVYGGNNDLEVAIEGTGRDCGEGSNAGGEGGSRKVLVFHSAGFNLFG GVVHLYVGWIGKKDLSFFSCVELNLGVESSACCFNSSLPDQFDQAIRFKFFPWDDQIF TSLDHS" mobile_element 35986934..35987044 /note="source:INTACT687_F13_scaffold_3-int 1713 1824" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 35988426..36002971 /locus_tag="TCM_026003" /note="dbxref CacaoGD:Thecc1EG026003" mRNA join(35988426..35988930,35996116..35996592, 35998069..35998563,36002794..36002971) /locus_tag="TCM_026003" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026017t1" /note="quality class is medium-utrpoor, express is medium, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.50 coverage" CDS join(35988928..35988930,35996116..35996523) /locus_tag="TCM_026003" /note="paralog of Thecc1EG026017t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10700.1" /translation="MDVPNVLEAVGVELARTKAENRRLAMRVRAKKLSVKWKKKELRR IRRVNQLLIAENKRMQELVDDFLLTAEVDNDHVRQMNEAIQGMNDLNLHGNYNITTVN QVQPCCSSGNAADGDNNGYNRGGGDGNNGGGHHE" mobile_element complement(35990017..35991138) /note="source:MITE_hAT_12 2 1084" /mobile_element_type="transposon:TIR/MITE" mobile_element 35991228..35991832 /note="source:CACAO_on_E212_scaffold_3 3 586" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(35991288..35991964) /note="source:CACAO_Again_on_S_E16_scaffold_1 62 736" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(35999682..35999805) /note="source:scaffold_1_CACTA_0001 8386 8511" /mobile_element_type="transposon:TIR/CACTA" mobile_element 35999699..36000115 /note="source:CACAO_on_E174_scaffold_5 1 417" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(36001742..36001892) /note="source:scaffold_5_CACTA_0599 8322 8474" /mobile_element_type="transposon:TIR/CACTA" gene 36004372..36005284 /locus_tag="TCM_026005" /note="dbxref CacaoGD:Thecc1EG026005" mRNA 36004372..36005284 /locus_tag="TCM_026005" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.38 coverage" CDS 36004430..36004855 /locus_tag="TCM_026005" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10701.1" /translation="MTSFPWLPHQHSLSALIMTSSLALLRDLPLALTLTYPFLRSSLV FFPWLPHRYPRLAPLFAFAVIEIHDLTMISFLASSLGSSVDSHIDILPWLLCSLLALS RTIDLTMTSFPSLPYRQPPLALTTPSSWLFSGIFPWLSQ" gene 36005418..36006298 /locus_tag="TCM_026006" /note="dbxref CacaoGD:Thecc1EG026006" mRNA 36005418..36006298 /locus_tag="TCM_026006" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026013t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.41 coverage" CDS 36005669..36006031 /locus_tag="TCM_026006" /note="paralog of Thecc1EG026013t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10702.1" /translation="MARWLRAKKLSVRRKKKELRRIKRVKQLLIAANKRMQELVDDFL FTAEADNKHVRQMNEAIQGMNDLSLDGNYNITTVNQVQPCCNSGSTTDGDNNSYNHGG GGGNSRGYGGGHDGRRHE" mobile_element 36010630..36010834 /note="source:CACAO_M_E44210_F112_scaffold_5 10488 10690" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 36011919..36012807 /note="source:CACAO_M_E44210_F112_scaffold_5 11732 12603" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 36014725..36014762 /note="source:scaffold_5_CACTA_0607 17024 17061" /mobile_element_type="transposon:TIR/CACTA" mobile_element 36016597..36016642 /note="source:CACAO_Helitron_S_E29_scaffold_3 4192 4549" /mobile_element_type="transposon:Helitron" mobile_element complement(36016643..36017254) /note="source:INTACT117_F146_scaffold_2-int 12350 12939" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 36017009..36017342 /note="source:INTACT59_F126_scaffold_9-int 15007 15336" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 36017443..36017733 /note="source:INTACT59_F126_scaffold_9-int 1040 1321" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 36017860..36019254 /note="source:INTACT59_F126_scaffold_9-int 1317 2533" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(36022034..36023494) /note="source:CACAO_Helitron_E168_scaffold_5 89 1549" /mobile_element_type="transposon:Helitron" gene 36022592..36034511 /locus_tag="TCM_026007" /note="dbxref CacaoGD:Thecc1EG026007" mRNA join(36022592..36022646,36028991..36029467, 36034333..36034511) /locus_tag="TCM_026007" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026017t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" mobile_element complement(36024891..36025180) /note="source:MITE_hAT_19 843 1114" /mobile_element_type="transposon:TIR/MITE" CDS 36029063..36029398 /locus_tag="TCM_026007" /note="paralog of Thecc1EG026017t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10703.1" /translation="MWLRAKKLSVKWKKRELRRIRRVNQLLIAENKRMQELVDDFLLT AEVDNNHVRQMNEAIQGMNDLNLDGNYNITTVNQVQPCCSSGSAADGDNNGYNRGGGD GNNGGGHHE" gene 36030635..36031618 /locus_tag="TCM_026008" /note="dbxref CacaoGD:Thecc1EG026008" mRNA 36030635..36031618 /locus_tag="TCM_026008" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS 36031123..36031371 /locus_tag="TCM_026008" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10704.1" /translation="MFNYRLVAPTLTCLSSIKPFRSIFFLGMIRYYIHNPRSFIMFLH LTPLTHHFIYICNCLLSLELYYRDRFFLSRTSYFMHLN" mobile_element 36032471..36032649 /note="source:CACAO_on_E446_scaffold_2 931 1148" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 36032490..36032908 /note="source:CACAO_MITE97_scaffold_5 1 419" /mobile_element_type="transposon:TIR/MITE" gene complement(36034890..36037573) /locus_tag="TCM_026009" /note="dbxref CacaoGD:Thecc1EG026009" mRNA complement(join(36034890..36035092,36035189..36035221, 36035633..36035724,36035937..36036320,36037086..36037156, 36037230..36037573)) /locus_tag="TCM_026009" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 0.92 coverage" CDS complement(join(36035045..36035092,36035189..36035221, 36035633..36035724,36035937..36036320,36037086..36037156, 36037230..36037501)) /locus_tag="TCM_026009" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10705.1" /translation="MASTIVATAITSAVSASSPRIITVVVAISGAATVTARLNLVHSS NILVSIEVEIIHSLDSFIHLANMIVICFGRKQKIVDQFLHAFIRRNNHLAMRLFSAFV LANSTPTSSRTLEPRKDPREEPRGWHGESQERLSIWKRRERCHGELNGLSESQKRTEE LREDVDVGVNGRSQRRGKEGCHGEVMDLNYSKSEQRSQTRMSMWEPRENTKEELREGY VNVRAKGRSRRRAKEDVMIRAKRGSRAKVNRGAKGGNISVRAKGRSQRGAKEDVTMVF NRRKSLVWVPSFPSIDGLQWPED" mobile_element 36039459..36040293 /note="source:INTACT7_F3_scaffold_8-int 3859 4837" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 36040212..36040293 /note="source:scaffold_6_CACTA_0712 1305 1379" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(36040232..36040300) /note="source:CACAO_Again_on_E207_scaffold_9 1019 1086" /mobile_element_type="transposon:TIR/hAT" gene complement(36042779..36053181) /locus_tag="TCM_026010" /note="dbxref CacaoGD:Thecc1EG026010" mRNA complement(join(36042779..36043010,36044309..36045576, 36050374..36050720,36051859..36052001,36052712..36053181)) /locus_tag="TCM_026010" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0022s00390.1.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004365t1" /inference="similar to AA sequence:Phytozome:POPTR_0022s00390.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.19 coverage" CDS complement(join(36042940..36043010,36044309..36045449)) /locus_tag="TCM_026010" /note="paralog of Thecc1EG004365t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10706.1" /db_xref="Phytozome:POPTR_0022s00390.1" /translation="MPNQGNVIYDHDRLIHEEMNYNLSELQQLHLNLITTLNIEQKQI YQCIKQSVDNDEGQMIFVYGHGGTGKTYLWNTIISSIRSVGKIVLAVASSGIASLLLP GGRTAHSRFKIPLDINEYSTCQIKKETQLARLVQACSLIVWDEAPMVHRHCFEALDRT LKDILNQDSNEAIDKPFGGKTLLLGGDFRQILPVIESGRKTDIINATINRSPLWSKCK VFKLKTNMRLLKPNLSEESRKEIETFAQWLLDVGDGNLHSTSMVINGDESDYIPLPND LLVPIIHNPINDIVFSVYNDFYKFHADPKYLRQRAIVTPYNKATNSINAYALDLLPGY TKTYFGHDSISQTSDQVSNHELLYPTEFLNSLKFSGLPDHALHLKIGLSISITPLQHL SSLWRYQVHNL" mobile_element 36049327..36050999 /note="source:CACAO_Helitron_S_E29_scaffold_3 6495 7391" /mobile_element_type="transposon:Helitron" gene complement(36053278..36070700) /locus_tag="TCM_026012" /note="dbxref CacaoGD:Thecc1EG026012" mRNA complement(join(36053278..36054248,36055953..36056105, 36056900..36056935,36059511..36059637,36059711..36059765, 36059873..36059997,36060070..36060172,36060416..36060623, 36060747..36060897,36070541..36070700)) /locus_tag="TCM_026012" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.21 coverage" CDS complement(join(36054174..36054248,36055953..36056105, 36056900..36056935,36059511..36059637,36059711..36059765, 36059873..36059997,36060070..36060172,36060416..36060623, 36060747..36060897,36070541..36070575)) /locus_tag="TCM_026012" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10707.1" /translation="MVLDIIVVVEESLKMSDQYLCNLRPFQQGIFVKVRIVRIWESID PSRPDTLLSLDFLAIDAQRGAMHFMIRSSDASQFRPQLKEGCLYSIKKFQINNKKTAF NPIPSNIMGIFTKNTVIQTIQDNLDAYPANFIGALKSITTIEKVRLQNRTSDVKKRDL YIEDLSGNTLKVVLYGDKAEAIDEDQLLDKFISPIVIVAATTIKKYMTTKFYMDLNIP ETMLHKQRYEKEPFSVQIINIHMSPQQLSTKEYEIKDSTLADINNADPTEVVHLLKPF LDNPDQEWHTGIAATTSKSSTPPPLTLGSSASKVTTEKAKEQLLPILMKAEMNREDVY SSLSTFNSDQYTFRKTFMSAF" mobile_element 36056696..36057092 /note="source:CACAO_Helitron_S_E29_scaffold_3 4192 5277" /mobile_element_type="transposon:Helitron" mobile_element 36057093..36057799 /note="source:INTACT59_F126_scaffold_9-int 645 1330" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(36057842..36058301) /note="source:INTACT622F_F362_scaffold_4-int 11011 11503" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 36057846..36059237 /note="source:INTACT59_F126_scaffold_9-int 916 2533" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 36062095..36062698 /note="source:CACAO_Helitron_E2_scaffold_1 208 809" /mobile_element_type="transposon:Helitron" mobile_element complement(36062799..36063079) /note="source:CACAO_Helitron_E168_scaffold_5 652 934" /mobile_element_type="transposon:Helitron" mobile_element complement(36063180..36063721) /note="source:CACAO_Helitron_E168_scaffold_5 89 629" /mobile_element_type="transposon:Helitron" mobile_element 36065118..36065189 /note="source:CACAO_on_E202_scaffold_1 1 73" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(36065291..36065484) /note="source:CACAO_Again_on_S_E16_scaffold_1 513 701" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(36065292..36065507) /note="source:MITE_hAT_4 811 1008" /mobile_element_type="transposon:TIR/MITE" gene 36071349..36074124 /locus_tag="TCM_026013" /note="dbxref CacaoGD:Thecc1EG026013" mRNA join(36071349..36072169,36072345..36072403, 36073484..36074124) /locus_tag="TCM_026013" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026006t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.40 coverage" CDS join(36071897..36072169,36072345..36072403, 36073484..36073868) /locus_tag="TCM_026013" /note="paralog of Thecc1EG026006t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10708.1" /translation="MFVFALAETLDLTITSFLDSFLRSSLGSYINISFLASFLGSSWL PLGHPSLSRICQCESQGKIREKRQGGCHDESQERMLMWKPREGCHGEPEHKRTEEPRR MSRPLAPLRTKTENRGMARWLRAKKLSVKRKKKELRRIKRVNQLLIAANKRMQELVDD FLLTAEANNNHVRQMNEAIQGMNDLNLDGNYNITTVNQVQPRCNSGSATDGDNNNYNR GGEGGNSRGYGGGHDGGRHE" gene 36078712..36080235 /locus_tag="TCM_026014" /note="dbxref CacaoGD:Thecc1EG026014" mRNA join(36078712..36079007,36079253..36079598, 36079773..36080235) /locus_tag="TCM_026014" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025998t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Newbler:10:TSA:cgbaL_g12584t00001" CDS join(36079005..36079007,36079253..36079598, 36079773..36079882) /locus_tag="TCM_026014" /note="paralog of Thecc1EG025998t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10709.1" /translation="MDAGNFLEAIPMGLALEWEREKTRLMKESLKHDEVAFLEKELER SMLIVKREEMLQEIKIEEKLVDDFMVFIGAVENNDVEIAQNFDEKAMMDAIISMLKGD GNSGWNGEGFGGIYGESYDLDVTIEGAERDGGEGSNSGGEGGSCDGDRLK" gene 36080710..36081825 /locus_tag="TCM_026016" /note="dbxref CacaoGD:Thecc1EG026016" mRNA 36080710..36081825 /locus_tag="TCM_026016" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.90 coverage" CDS 36081100..36081321 /locus_tag="TCM_026016" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10710.1" /translation="MFCIIASQPRSHFLLRGIALFLSLLSLGLRQACKLNSFLHVEKG LLFLYAPFYLCSVKEPLSSFSTEKAELWC" mobile_element complement(36082492..36082587) /note="source:scaffold_4_CACTA_0511 7079 7183" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(36083268..36089001) /note="source:INTACT166_F161_scaffold_4-int 43 5753" /mobile_element_type="retrotransposon:LTR/Copia" gene 36091076..36102521 /locus_tag="TCM_026017" /note="dbxref CacaoGD:Thecc1EG026017" mRNA join(36091076..36091189,36091395..36091839, 36092009..36092375,36094524..36094960,36102495..36102521) /locus_tag="TCM_026017" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026013t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.50 coverage" CDS join(36091741..36091839,36092009..36092375, 36094524..36094738) /locus_tag="TCM_026017" /note="paralog of Thecc1EG026013t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10711.1" /translation="MSDGSSRSFLSSANPPCWEFFLFSSKSLVTLLPDVRNILENVEV ELGRKKAENRCMARWLRAKNLSVKRKKKAQRRIKRVNHLLIAENRRMKELVDVFLLTA EADNNHVREMNAAIQGMNDLNLDGNYNITTVNQVQPCSSSGSAADGDNNGYNREESAA VCEETELKKELQRVVKTILEEDDIGLTTIEATRILCNLAELKPKKTVGLRLDDKVLLE KFKCPLSG" mobile_element 36095597..36096008 /note="source:CACAO_M_E85265_F10_scaffold_10 3374 3787" /mobile_element_type="retrotransposon:LTR/Copia" gene 36096894..36101878 /locus_tag="TCM_026018" /note="dbxref CacaoGD:Thecc1EG026018" mRNA join(36096894..36097164,36097763..36097947, 36098067..36098555,36098778..36099009,36099300..36100011, 36100099..36100355,36100497..36101878) /locus_tag="TCM_026018" /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027182t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.25 coverage" CDS join(36097040..36097164,36097763..36097947, 36098067..36098555,36098778..36099009,36099300..36100011, 36100099..36100355,36100497..36100899) /locus_tag="TCM_026018" /note="paralog of Thecc1EG027182t1" /codon_start=1 /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /protein_id="EOY10712.1" /db_xref="TAIR:AT4G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AWN8" /translation="MESNLEAFTIWEVVESDVEPVQRRVNPTLAQIRQFEEDKVKRPN IKCRAYNQQGHVEKLCNKSKNVEEKSTVVAQHQSDDNDVMFMAKQADSDFRNDTWLLD SGVQTIDGMKSISKVYYALHVSQNLLSARQLLNENFELLFEDKACNVKDPFGKELFTM KMKNKCFPLNWSAAQYTAYKVTVVDDELWHRRYGHVNHSYLKQMVLHNLVNGLPNVSK PDKLCSTCQFGKQNRIAFPKTRSWTATQKLQLVHTDLRGLMRTLSLNEITYSPHQNGV SEKKNKIMIEMALCLLFEMNLPKFLWAEVANTANYLLNMTQTKSLGKKTPYEAWFGFK PTVTHLKVFRGTISLEDIYEICHIAITEPQSYSEAAANEHWKQAMEAEMMMILKNNTW SLVDKPKNRKVIGVTWIFRTKLNFDASINKFKDRLVVKGFSQVYRVDFLETFAPVARH DTIRLLIALAAKEKWLIWHLDIKSAFLNGTISENIYVNQREGFVEPGKEDKVCKLTKA LYGLKQALRAWYERMDNYLQSQGFVRIVSEHTLYVKSTDDVIQLIVYLYVDDLLITSP SGDFLDDFKNKMKKEKYAGVLLKKFSMGECKPVSTPLVVGSKLSKEAGGVEANVVQYK RIIGSLLYLSASKLDIMFATSFFSRFMQAPTNLHLMAPKRVLNAIFSWNLKKQDIVTQ SSAEAKYVLAAAATNQALWLRKIFLDLKVKLEEPIILWVDNQSTIAMAENPVMHGRTK HIRVKFHAIREAVRNKDILIRYCNTHDQVSNILTNTLSKEKFEELRVKLGICKIDLPG VY" gene complement(36102473..36104098) /locus_tag="TCM_026019" /note="dbxref CacaoGD:Thecc1EG026019" mRNA complement(join(36102473..36102901,36103072..36103263, 36103440..36103581,36103733..36103917,36104002..36104098)) /locus_tag="TCM_026019" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025978t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1198t6" CDS complement(join(36102720..36102901,36103072..36103263, 36103440..36103581,36103733..36103906)) /locus_tag="TCM_026019" /note="paralog of Thecc1EG025978t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10713.1" /translation="MSNINHCQLNFNCKFNACGAGFPLQLQNCAQVNEVKHRKWELHE VYPENSRKKITLDLKAALFAMEGFKILLPISPFVLAFSVATASDPSPLQDFFVALKDA QNGVFVNGNFCKDPKLVKAEDFFFSGLNIPGNTSNQLGSKVTPVNVEQIPGLGTLAIS LAWIDFAHYGKTNAVAFAGLSSQNPGVITIANAVLGSKSSINPDILSKAFQLDKNVVT YLQSRFWWNND" gene complement(36104548..36106891) /locus_tag="TCM_026020" /note="dbxref CacaoGD:Thecc1EG026020" mRNA complement(join(36104548..36105545,36105757..36106069, 36106155..36106284,36106407..36106577,36106741..36106891)) /locus_tag="TCM_026020" /product="Alpha-expansin 1 precursor" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s05730.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011686t1" /inference="similar to AA sequence:Phytozome:GSVIVT01025509001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc5821t1" CDS complement(join(36105242..36105545,36105757..36106069, 36106155..36106284,36106407..36106577,36106741..36106773)) /locus_tag="TCM_026020" /note="paralog of Thecc1EG011686t1" /codon_start=1 /product="Alpha-expansin 1 precursor" /protein_id="EOY10714.1" /db_xref="Phytozome:GSVIVT01025509001" /db_xref="TAIR:AT2G03090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LKJ8" /translation="MGPICERILFPHLPNTFLCDPSPSPSISLSSVTHIINRTSPPSS SYLISQFSLTLFPKSKFSKLTLAFKMDFLGIFLVSSLATLKTIHGYGGGWSNAHATFY GGGDASGTMGGACGYGNLYSQGYGTSTAALSTALFNKGLTCGACFEIKCINDNRWCLP GSIIVTATNFCPPNNALPNNAGGWCNPPLRHFDLSQPVFQHIAQYKAGIVPVQYRRVA CRKSGALRFTINGHSYFNLVLITNVGGAGDVVSVSIKGSRTGWQVMSRNWGQNWQSNS YLNGQALSFKVTTSDGSSVISNNAAPPNWSFGQTFTGGQF" gene complement(36109932..36114747) /locus_tag="TCM_026021" /note="dbxref CacaoGD:Thecc1EG026021" mRNA complement(join(36109932..36111020,36111114..36111154, 36112788..36113439,36114580..36114747)) /locus_tag="TCM_026021" /product="RING/U-box superfamily protein" /inference="alignment:exonerate- protein:2:ricco:29950.m001165" /inference="similar to AA sequence:Phytozome:POPTR_0019s04780.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05264t00001" CDS complement(join(36110025..36111020,36111114..36111154, 36112788..36113106)) /locus_tag="TCM_026021" /codon_start=1 /product="RING/U-box superfamily protein" /protein_id="EOY10715.1" /db_xref="Phytozome:POPTR_0019s04780.1" /db_xref="TAIR:AT5G18260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q10M20" /translation="MDRDEPHWRINSSFSPPPSRILDCRLHSDGLRHGSHCAGLHGSS LSSNSRGSRSRVGSEGCINHHHSVSDGALSYSGSPPDNAQLPQWTSPIQRFNTEELPF SNVGGPMPQTSWFPCSTERRYAVKATAASPSFGSPSSLSESSHWESTSKQPFSFPNRN FSGRRSYMSKAVYPLVFRNPVSDNEAFGDADINSVGRLTPSEDRFSPFHLHENSSSVE HKFHKTLSELQRSEASPDPSASSRREGFRWSSASSYDLGLDGEKFDMAEHVDVEHLRS PIGPVVDHKCGVCGKLLWQKSPWSSHRIIRGGDMPTAGVLPCSHVFHAECLEQVTPKS QIHDPPCPLCLKTIGALEESASVSEPLQVALRSLRRSRGAMISEDQEDDEVSNHIKEK IRRNWPRPAPRWNDSGSSIKNRLKKHFTFKGKVSKDIFSTKVFQRIGSSSSSSRETVR H" gene 36119082..36120656 /locus_tag="TCM_026023" /note="dbxref CacaoGD:Thecc1EG026023" mRNA join(36119082..36119222,36119319..36119381, 36119773..36120656) /locus_tag="TCM_026023" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.53 coverage" CDS join(36119155..36119222,36119319..36119381, 36119773..36119947) /locus_tag="TCM_026023" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10716.1" /translation="MSLKFLVKSQFPMAMAVNRTFRARADNGRTLFLANQGKMGGRER VKINGPLAYHMLKTQRILINGEPDIENENYPDNPSLPVNREMGQRRKPYHILHWDQV" gene complement(36123197..36125651) /locus_tag="TCM_026024" /note="dbxref CacaoGD:Thecc1EG026024" mRNA complement(join(36123197..36123961,36124437..36124601, 36124719..36124898,36125394..36125651)) /locus_tag="TCM_026024" /product="Atypical CYS HIS rich thioredoxin 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s04750.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014055t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s04750.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g06753t00001" CDS complement(join(36123671..36123961,36124437..36124601, 36124719..36124898,36125394..36125642)) /locus_tag="TCM_026024" /note="paralog of Thecc1EG014055t1" /codon_start=1 /product="Atypical CYS HIS rich thioredoxin 4" /protein_id="EOY10717.1" /db_xref="Phytozome:POPTR_0019s04750.1" /db_xref="TAIR:AT1G08570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O64654" /translation="MAEVLGKGNLFTTCDYRQKKNQGGGVSLFSKRISEFCLKKNSFP SLKVKSQALRTDFNGKQVCFLEKKSVNKRGFGQVPIKAQVRTGLIGRSQKWWEKGLQP NMKEVTSAQDLVDALMNAGDKLLVVDFFSPGCGGCKALHPKICQLAEMNPEVQFFQLN YEEHKSMCYSLNVHVLPFFRFYRGAHGRLCSFSCTNATIKKFKDALAKHTPDRCSLGP TKGLEEKELLALAANKDLSFNYTPKPVQPSPVPAQEEILVSKEVPSDSGTKLPFPLPT TSLKPKESEEKSMVGAGR" mobile_element complement(36126633..36127118) /note="source:scaffold_9_CACTA_0946 17725 18225" /mobile_element_type="transposon:TIR/CACTA" gene 36128246..36130983 /locus_tag="TCM_026025" /note="dbxref CacaoGD:Thecc1EG026025" mRNA join(36128246..36129932,36130036..36130174, 36130376..36130983) /locus_tag="TCM_026025" /product="Tryptophan/tyrosine permease" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s04740.1" /inference="similar to AA sequence:Phytozome:POPTR_0019s04740.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9900t1" CDS join(36128346..36129932,36130036..36130174, 36130376..36130422) /locus_tag="TCM_026025" /codon_start=1 /product="Tryptophan/tyrosine permease" /protein_id="EOY10718.1" /db_xref="Phytozome:POPTR_0019s04740.1" /db_xref="TAIR:AT2G33260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPM2" /translation="MLLPHHPSSIPDSLWRSRFNLHHLSTQLHRLSIPYTATFNDRPT TLFKTNQHSFSTLPSKNHHPLLLTTKCTPQSLALPVVSHDEGENSVETVKNQLPQEPQ KQYKEKSFWGAVSLIIGTAVGPGMLGLPAATIKSGPLPSTIAILLSWVYVISSIILVA ELSFAAMEEDGLAEVSFTGLATKALGGHFGAFVAVIYASLSFSLLVACVSGIGSIVCQ WFPWMNLVLAHALFPLAVGTVIMFFPFKAIDFTNRLLCFLMLFSITALVAIGLSVARA NVLGSFAHASWSLSSILPAIPVTVLTLGFHVITPFICKIAGNSVSEARKAVLIGGAVP LIMVLSWNLIVLGLAGTTSVTSPKDPISLLLSVNPSALSAVQGFAFSALATSLIGYAV SFPKQLLDTLELILAKTSLEKQNCYQSQLVSTGDGSGRVGFVIYSGQEDCGKIGKVSF GSNSIAASEYELLLRMTELKSFEMFVMPLVLTAPVLIASFFRSTFSRALDFAGVYANC FLFGILPPAMAYIQQSKKKLRVVYPPGRRCHTCTTVQHCCHFGDLALDGQQVDLIEKR IVCSQTDTKDTSAISLTEEAQLLK" gene complement(36130972..36132821) /locus_tag="TCM_026026" /note="dbxref CacaoGD:Thecc1EG026026" mRNA complement(36130972..36132821) /locus_tag="TCM_026026" /product="Pentatricopeptide repeat superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s05130.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s05130.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaB_g12855t00001" CDS complement(36131205..36132695) /locus_tag="TCM_026026" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein, putative" /protein_id="EOY10719.1" /db_xref="Phytozome:POPTR_0013s05130.1" /db_xref="TAIR:AT1G09220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AUW9" /translation="MLKLTEPPFPSKIKFSLRFLHSFPSSSPTESQLSLSPQHKQNYQ KYFLFSFLNKNPTKQRVPKQVHSQLLTTASISHSLRLFNALLRCYSFSENPKDAIFLY QQVQSCYLYLKFDSFTYAFLIKACANLNDVVLGKQFHGVEIKMGFESHPYVQTGLVNM YVESGGLVECKKVFDEMPEKNRVTWNVMITGLAKQGDIEFARFLFEKMPDRDIVSWSG IIDGYTRMNQYRNALGLFRRMVVDDVVEPSYITVLAILPAVWNIGDIRMCRLIHGYGK KRGFHVSDIRIMNSFIDTYAKCGCMMSALRFFEEISADMKNLVSWTSLISGFALHGMG KEAVESFQRMEQVGWKPNRVTFLSVLNACSHGGLVEEGLKFFEKMVNECQILPDVKHY GCLVDMLGRAGRLEEAERIALEIPCEIASDVVWRILLGACSFYGNVEVGERVTTKIME IERGNGGDYVLMSNILAGAGRFRDAESLRRLMDERNAIKVPGSSLV" gene complement(36132902..36137530) /locus_tag="TCM_026027" /note="dbxref CacaoGD:Thecc1EG026027" mRNA complement(join(36132902..36133383,36133491..36133820, 36134084..36134149,36134378..36134436,36134645..36134732, 36134985..36135161,36135244..36135414,36135569..36135757, 36135890..36135971,36136208..36136444,36136657..36136728, 36136845..36137089,36137467..36137530)) /locus_tag="TCM_026027" /product="RNA-binding family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29950.m001170" /inference="similar to AA sequence:Phytozome:GSVIVT01020933001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9909t3; alternateUTRof:Thecc1EG026027t1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1647t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9909t1" mRNA complement(join(36132902..36133820,36134084..36134149, 36134378..36134436,36134645..36134732,36134985..36135161, 36135244..36135414,36135569..36135757,36135890..36135971, 36136208..36136444,36136657..36136728,36136845..36137089, 36137467..36137530)) /locus_tag="TCM_026027" /product="RNA-binding family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29950.m001170" /inference="similar to AA sequence:Phytozome:GSVIVT01020933001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9909t2; alternateUTRof:Thecc1EG026027t1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1647t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9909t1" mRNA complement(join(36132937..36133383,36133476..36133820, 36134084..36134149,36134378..36134436,36134645..36134732, 36134985..36135161,36135244..36135414,36135569..36135757, 36135890..36135971,36136208..36136444,36136657..36136728, 36136845..36137087)) /locus_tag="TCM_026027" /product="RNA-binding family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29950.m001170" /inference="similar to AA sequence:Phytozome:GSVIVT01020933001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1647t6; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1647t6" mRNA complement(join(36132937..36134149,36134378..36134436, 36134645..36134732,36134985..36135161,36135244..36135414, 36135569..36135757,36135890..36135971,36136208..36136444, 36136657..36136728,36136845..36137087)) /locus_tag="TCM_026027" /product="RNA-binding family protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:29950.m001170" /inference="similar to AA sequence:Phytozome:GSVIVT01020933001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1647t8; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1647t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9909t1" mRNA complement(join(36133646..36133820,36134084..36134149, 36134378..36134436,36134645..36134732,36134985..36135161, 36135244..36135414,36135569..36135757,36135890..36135971, 36136208..36136444,36136657..36136728,36136879..36137089, 36137467..36137529)) /locus_tag="TCM_026027" /product="RNA-binding family protein isoform 5" /inference="alignment:exonerate- protein:2:ricco:29950.m001170" /inference="similar to AA sequence:Phytozome:GSVIVT01020933001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02200t00002; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1647t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9909t1" CDS complement(join(36133737..36133820,36134084..36134149, 36134378..36134436,36134645..36134732,36134985..36135161, 36135244..36135414,36135569..36135757,36135890..36135971, 36136208..36136444,36136657..36136728,36136845..36137059)) /locus_tag="TCM_026027" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="RNA-binding family protein isoform 1" /protein_id="EOY10720.1" /db_xref="Phytozome:GSVIVT01020933001" /db_xref="TAIR:AT1G09230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7KJM9" /translation="MAAVPSSQPFSNPQMQHFGYQGVEGTTSNPHELESVTTLLIRHL PEAIPHDTLLRLFSHYGASSVRPCSSGKLRNCAFVDFKNEALASQAQRQLNGLRFLGK VLSVERASKTTEDNKPQQTGVQPGKDFPQSASMVKDASLARDLNQGSRLRSVPTSEPI APRLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRM ALPTPPLPPSVPAPQPPPPPPLPASTPTEPHFADASSSESEMESSDEEVNDKGTAKSA RKRARREAIVGPAIDKSVAHEAVGVKPATLIPKEIPFIKKKNPILQIKIAPKHIPNEQ KDDDDDYKRISEEPNEEDSDAKCFATADELEKGKLPPEEILSLPMFKNYAAGNPASVL YIKNLAKDVVPEDFYFIFGSLFGSIDAAKSGLNVKLMQEGRMRGQAFVTFPAVELAHH ALNLVNGYVFKGKPIIIQFGRNPATAKTN" CDS complement(join(36133737..36133820,36134084..36134149, 36134378..36134436,36134645..36134732,36134985..36135161, 36135244..36135414,36135569..36135757,36135890..36135971, 36136208..36136444,36136657..36136728,36136845..36137059)) /locus_tag="TCM_026027" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="RNA-binding family protein isoform 1" /protein_id="EOY10721.1" /db_xref="Phytozome:GSVIVT01020933001" /db_xref="TAIR:AT1G09230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7KJM9" /translation="MAAVPSSQPFSNPQMQHFGYQGVEGTTSNPHELESVTTLLIRHL PEAIPHDTLLRLFSHYGASSVRPCSSGKLRNCAFVDFKNEALASQAQRQLNGLRFLGK VLSVERASKTTEDNKPQQTGVQPGKDFPQSASMVKDASLARDLNQGSRLRSVPTSEPI APRLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRM ALPTPPLPPSVPAPQPPPPPPLPASTPTEPHFADASSSESEMESSDEEVNDKGTAKSA RKRARREAIVGPAIDKSVAHEAVGVKPATLIPKEIPFIKKKNPILQIKIAPKHIPNEQ KDDDDDYKRISEEPNEEDSDAKCFATADELEKGKLPPEEILSLPMFKNYAAGNPASVL YIKNLAKDVVPEDFYFIFGSLFGSIDAAKSGLNVKLMQEGRMRGQAFVTFPAVELAHH ALNLVNGYVFKGKPIIIQFGRNPATAKTN" CDS complement(join(36133737..36133820,36134084..36134149, 36134378..36134436,36134645..36134732,36134985..36135161, 36135244..36135414,36135569..36135757,36135890..36135971, 36136208..36136444,36136657..36136728,36136845..36137059)) /locus_tag="TCM_026027" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="RNA-binding family protein isoform 1" /protein_id="EOY10722.1" /db_xref="Phytozome:GSVIVT01020933001" /db_xref="TAIR:AT1G09230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7KJM9" /translation="MAAVPSSQPFSNPQMQHFGYQGVEGTTSNPHELESVTTLLIRHL PEAIPHDTLLRLFSHYGASSVRPCSSGKLRNCAFVDFKNEALASQAQRQLNGLRFLGK VLSVERASKTTEDNKPQQTGVQPGKDFPQSASMVKDASLARDLNQGSRLRSVPTSEPI APRLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRM ALPTPPLPPSVPAPQPPPPPPLPASTPTEPHFADASSSESEMESSDEEVNDKGTAKSA RKRARREAIVGPAIDKSVAHEAVGVKPATLIPKEIPFIKKKNPILQIKIAPKHIPNEQ KDDDDDYKRISEEPNEEDSDAKCFATADELEKGKLPPEEILSLPMFKNYAAGNPASVL YIKNLAKDVVPEDFYFIFGSLFGSIDAAKSGLNVKLMQEGRMRGQAFVTFPAVELAHH ALNLVNGYVFKGKPIIIQFGRNPATAKTN" CDS complement(join(36133737..36133820,36134084..36134149, 36134378..36134436,36134645..36134732,36134985..36135161, 36135244..36135414,36135569..36135757,36135890..36135971, 36136208..36136329)) /locus_tag="TCM_026027" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="RNA-binding family protein isoform 5" /protein_id="EOY10724.1" /db_xref="Phytozome:GSVIVT01020933001" /db_xref="TAIR:AT1G09230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5U9" /translation="MVKDASLARDLNQGSRLRSVPTSEPIAPRLGVDYPFPPHLEYAY PPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMALPTPPLPPSVPAPQPPP PPPLPASTPTEPHFADASSSESEMESSDEEVNDKGTAKSARKRARREAIVGPAIDKSV AHEAVGVKPATLIPKEIPFIKKKNPILQIKIAPKHIPNEQKDDDDDYKRISEEPNEED SDAKCFATADELEKGKLPPEEILSLPMFKNYAAGNPASVLYIKNLAKDVVPEDFYFIF GSLFGSIDAAKSGLNVKLMQEGRMRGQAFVTFPAVELAHHALNLVNGYVFKGKPIIIQ FGRNPATAKTN" mRNA complement(join(36133792..36133820,36134084..36134436, 36134645..36134732,36134985..36135161,36135244..36135414, 36135569..36135757,36135890..36135971,36136208..36136444, 36136657..36136728,36136845..36137087)) /locus_tag="TCM_026027" /product="RNA-binding family protein isoform 6" /inference="alignment:exonerate- protein:2:ricco:29950.m001170" /inference="similar to AA sequence:Phytozome:POPTR_0013s05120.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1650t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9909t1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1647t6" CDS complement(join(36133976..36134149,36134378..36134436, 36134645..36134732,36134985..36135161,36135244..36135414, 36135569..36135757,36135890..36135971,36136208..36136444, 36136657..36136728,36136845..36137059)) /locus_tag="TCM_026027" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="RNA-binding family protein isoform 4" /protein_id="EOY10723.1" /db_xref="Phytozome:GSVIVT01020933001" /db_xref="TAIR:AT1G09230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPM1" /translation="MAAVPSSQPFSNPQMQHFGYQGVEGTTSNPHELESVTTLLIRHL PEAIPHDTLLRLFSHYGASSVRPCSSGKLRNCAFVDFKNEALASQAQRQLNGLRFLGK VLSVERASKTTEDNKPQQTGVQPGKDFPQSASMVKDASLARDLNQGSRLRSVPTSEPI APRLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRM ALPTPPLPPSVPAPQPPPPPPLPASTPTEPHFADASSSESEMESSDEEVNDKGTAKSA RKRARREAIVGPAIDKSVAHEAVGVKPATLIPKEIPFIKKKNPILQIKIAPKHIPNEQ KDDDDDYKRISEEPNEEDSDAKCFATADELEKGKLPPEEILSLPMFKNYAAGNPASVL YIKNLAKDVVPEDFYFIFGSLFGSIDAAKSGLNVKLMQEGRMRGQAFVTFPAVELAHH ALVCFSQVSCFPGTSEFMRFVYLVNIASWPALVSKDY" CDS complement(join(36134357..36134436,36134645..36134732, 36134985..36135161,36135244..36135414,36135569..36135757, 36135890..36135971,36136208..36136444,36136657..36136728, 36136845..36137059)) /locus_tag="TCM_026027" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="RNA-binding family protein isoform 6" /protein_id="EOY10725.1" /db_xref="Phytozome:POPTR_0013s05120.1" /db_xref="TAIR:AT1G09230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPM1" /translation="MAAVPSSQPFSNPQMQHFGYQGVEGTTSNPHELESVTTLLIRHL PEAIPHDTLLRLFSHYGASSVRPCSSGKLRNCAFVDFKNEALASQAQRQLNGLRFLGK VLSVERASKTTEDNKPQQTGVQPGKDFPQSASMVKDASLARDLNQGSRLRSVPTSEPI APRLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRM ALPTPPLPPSVPAPQPPPPPPLPASTPTEPHFADASSSESEMESSDEEVNDKGTAKSA RKRARREAIVGPAIDKSVAHEAVGVKPATLIPKEIPFIKKKNPILQIKIAPKHIPNEQ KDDDDDYKRISEEPNEEDSDAKCFATADELEKGKLPPEEILSLPMFKNYAAGNPASVL YIKNLAKDVVPEDFYFIFGSLFGSIDAAKSGLNVKLMQVTLLLD" gene 36143246..36145387 /locus_tag="TCM_026028" /note="dbxref CacaoGD:Thecc1EG026028" mRNA join(36143246..36143636,36143812..36144092, 36144380..36145387) /locus_tag="TCM_026028" /product="NAC domain protein, IPR003441, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s04710.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014073t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s04710.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc508t1_C2" CDS join(36143450..36143636,36143812..36144092, 36144380..36145075) /locus_tag="TCM_026028" /note="paralog of Thecc1EG014073t1" /codon_start=1 /product="NAC domain protein, IPR003441, putative" /protein_id="EOY10726.1" /db_xref="Phytozome:POPTR_0019s04710.1" /db_xref="TAIR:AT5G18270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPM0" /translation="MEEAIVVNKGEDLIDLPPGFRFHPTDEEIITHYLTEKVMNSNFS ASAIGEVDLNKCEPWDLPKKAKMGEKEWYFFCQRDRKYPTGMRTNRATEAGYWKATGK DKEIYKGKGCLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLEGKFSYYNLPKGAKDEWV VCRVFHKNIGIKKPIPDQLLRMNSFGDDLMDYASLPPLMDPTYSNKAGSSFTDGQNEF KAIDTTPMPRSSEGNYPGSSNFPTMNNNQNFLQAPNNHYHQTGSSMFNPQIPIQNPIL FHQGTPNSAYSHQGRTSGSASSNYSTGFGGNDQAILRALAANNSADTRKADRQCKVEQ FSSNQSMVSLSQDTGLSTEINNTEISSVLSKRMELGSSKSYEDIEDLGCLWDY" gene complement(36151141..36154371) /locus_tag="TCM_026029" /note="dbxref CacaoGD:Thecc1EG026029" mRNA complement(join(36151141..36151605,36151714..36151942, 36153209..36153331,36153640..36154371)) /locus_tag="TCM_026029" /product="Hydroxyproline-rich glycoprotein family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g28500.1" /inference="similar to AA sequence:ricco:29950.m001172" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:PASA:2:TSA:puevd3b025177t1a2; alternateUTRof:Thecc1EG026029t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14815t2" mRNA complement(join(36151141..36151605,36151714..36151942, 36152053..36152204,36152852..36152930,36153209..36153331, 36153640..36154371)) /locus_tag="TCM_026029" /product="Hydroxyproline-rich glycoprotein family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g28500.1" /inference="similar to AA sequence:ricco:29950.m001172" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00110t00002" mRNA complement(join(36151219..36151623,36151714..36151942, 36153209..36153331,36153640..36154334)) /locus_tag="TCM_026029" /product="Hydroxyproline-rich glycoprotein family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g28500.1" /inference="similar to AA sequence:ricco:29950.m001172" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10628t1; inference alignment:Newbler:10:TSA:cgbaP2_g00110t00002; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14815t2" mRNA complement(join(36151305..36151602,36151617..36151623, 36151714..36151942,36153209..36153331,36153640..36154305)) /locus_tag="TCM_026029" /product="Hydroxyproline-rich glycoprotein family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g28500.1" /inference="similar to AA sequence:ricco:29950.m001172" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00110t00002; alternateUTRof:Thecc1EG026029t2; inference alignment:Newbler:10:TSA:cgbaP2_g00110t00002; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14815t2" CDS complement(join(36151604..36151605,36151714..36151942, 36153209..36153331,36153640..36154257)) /locus_tag="TCM_026029" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29950.m001172" /codon_start=1 /product="Hydroxyproline-rich glycoprotein family protein, putative isoform 2" /protein_id="EOY10730.1" /db_xref="TAIR:AT2G39050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q945P1" /translation="MEYPFGHNHRHTHHNRNDDRENEERQPPCHHHNEFVPPSQPPHH QHNEFAPPPHYQPTSFDGPSPPPPSPYFQQPGFAAPPPAQPPSYHQQTVYPPPPSHVT HLHHSGGTQQPDYSSSNYSPPSAHVTHVAHESSHQRVDHQIEGHHSFRPHLPSIPHDH SHSASLSELSKKPTVKVYCKANPGFHLTIRDGKVILAPSDPSDEFQHWYKDEKYSTRA KDEVGFPSFALVNKVTGQAIKHSVGATHPVQLTPYKSDQLDESILWSESTDLGDGYRA VRMINNIRLNVDAFNGDKKSGGVHDGTTIVLWQWNKGDNQRWKIVPY" CDS complement(join(36151604..36151605,36151714..36151942, 36152053..36152204,36152852..36152930,36153209..36153331, 36153640..36154257)) /locus_tag="TCM_026029" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29950.m001172" /codon_start=1 /product="Hydroxyproline-rich glycoprotein family protein isoform 1" /protein_id="EOY10727.1" /db_xref="TAIR:AT2G39050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q945P1" /translation="MEYPFGHNHRHTHHNRNDDRENEERQPPCHHHNEFVPPSQPPHH QHNEFAPPPHYQPTSFDGPSPPPPSPYFQQPGFAAPPPAQPPSYHQQTVYPPPPSHVT HLHHSGGTQQPDYSSSNYSPPSAHVTHVAHESSHQRVDHQIEGHHSFRPHLPSIPHDH SHSASLSELSKKPTVKVYCKANPGFHLTIRDGKVILAPSDPSDEFQHWYKDEKYSTRA KDEVGFPSFALVNKVTGQAIKHSVGATHPNILSILFSGAFAIQHLPMMNKEFIPLAIL TAKMLSLFSCKMRSMVFSPSHVLRLGILEASLAVALMTSPTSSLLIPTVQLTPYKSDQ LDESILWSESTDLGDGYRAVRMINNIRLNVDAFNGDKKSGGVHDGTTIVLWQWNKGDN QRWKIVPY" CDS complement(join(36151622..36151623,36151714..36151942, 36153209..36153331,36153640..36154257)) /locus_tag="TCM_026029" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29950.m001172" /codon_start=1 /product="Hydroxyproline-rich glycoprotein family protein, putative isoform 2" /protein_id="EOY10728.1" /db_xref="TAIR:AT2G39050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q945P1" /translation="MEYPFGHNHRHTHHNRNDDRENEERQPPCHHHNEFVPPSQPPHH QHNEFAPPPHYQPTSFDGPSPPPPSPYFQQPGFAAPPPAQPPSYHQQTVYPPPPSHVT HLHHSGGTQQPDYSSSNYSPPSAHVTHVAHESSHQRVDHQIEGHHSFRPHLPSIPHDH SHSASLSELSKKPTVKVYCKANPGFHLTIRDGKVILAPSDPSDEFQHWYKDEKYSTRA KDEVGFPSFALVNKVTGQAIKHSVGATHPVQLTPYKSDQLDESILWSESTDLGDGYRA VRMINNIRLNVDAFNGDKKSGGVHDGTTIVLWQWNKGDNQRWKIVPY" CDS complement(join(36151622..36151623,36151714..36151942, 36153209..36153331,36153640..36154257)) /locus_tag="TCM_026029" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29950.m001172" /codon_start=1 /product="Hydroxyproline-rich glycoprotein family protein, putative isoform 2" /protein_id="EOY10729.1" /db_xref="TAIR:AT2G39050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q945P1" /translation="MEYPFGHNHRHTHHNRNDDRENEERQPPCHHHNEFVPPSQPPHH QHNEFAPPPHYQPTSFDGPSPPPPSPYFQQPGFAAPPPAQPPSYHQQTVYPPPPSHVT HLHHSGGTQQPDYSSSNYSPPSAHVTHVAHESSHQRVDHQIEGHHSFRPHLPSIPHDH SHSASLSELSKKPTVKVYCKANPGFHLTIRDGKVILAPSDPSDEFQHWYKDEKYSTRA KDEVGFPSFALVNKVTGQAIKHSVGATHPVQLTPYKSDQLDESILWSESTDLGDGYRA VRMINNIRLNVDAFNGDKKSGGVHDGTTIVLWQWNKGDNQRWKIVPY" mobile_element complement(36156039..36156217) /note="source:scaffold_7_CACTA_0779 12738 12907" /mobile_element_type="transposon:TIR/CACTA" gene complement(36157118..36160431) /locus_tag="TCM_026030" /note="dbxref CacaoGD:Thecc1EG026030" mRNA complement(join(36157118..36158535,36159099..36159424, 36159592..36159734,36160189..36160431)) /locus_tag="TCM_026030" /product="NAC domain containing protein 47, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29950.m001173" /inference="similar to AA sequence:Phytozome:POPTR_0019s04690.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc804t3" mRNA complement(join(36157410..36158535,36159099..36159424, 36159592..36159943)) /locus_tag="TCM_026030" /product="NAC domain containing protein 47, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:29950.m001173" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG031363t1" /inference="similar to AA sequence:ricco:29950.m001173" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9955t1; inference alignment:Newbler:10:TSA:cgbaB_g06766t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc804t3" CDS complement(join(36157954..36158535,36159099..36159424, 36159592..36159734,36160189..36160406)) /locus_tag="TCM_026030" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="NAC domain containing protein 47, putative isoform 1" /protein_id="EOY10731.1" /db_xref="Phytozome:POPTR_0019s04690.1" /db_xref="TAIR:AT3G04070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5U7" /translation="MYDNRNWRYLGFGLVGGRVMGREECSMEYFDVTHKKAKTLERMT RGKGIHERTNDVIRLSSSIVQPPAIFSHTLPPGFRFHPTDEELILHYLKKKLSSSPFP VSIIADVDIYKFDPWELPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGT DKVIFTSSMVAGGGGVQENIGVKKALVFYKGRPPKGIKTNWIMHEYRLAENPNSNYNN RPVKSKDSSMRLDDWVLCRIYKKSHALSSTSTAAASDQDQEEEETEQFIHDALLPALK SPPSNNTLQPQKSCSFSNLLDAMDYSLLSSFLADNQCNTTGYESSSFSFGNLEQPPVN NYTNSSSSSSMLLQKLPQLNSSIPNMENKLKRQCTSIDEDYLHPSKKLISSCSYSNSA SQSDMTQYNFLNQSFFNQSLLLSPHLQFQG" CDS complement(join(36157954..36158535,36159099..36159424, 36159592..36159754)) /locus_tag="TCM_026030" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29950.m001173; paralog of Thecc1EG031363t1" /codon_start=1 /product="NAC domain containing protein 47, putative isoform 2" /protein_id="EOY10732.1" /db_xref="TAIR:AT3G04070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5U7" /translation="MKHPQSSLPPGFRFHPTDEELILHYLKKKLSSSPFPVSIIADVD IYKFDPWELPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKVIFTSS MVAGGGGVQENIGVKKALVFYKGRPPKGIKTNWIMHEYRLAENPNSNYNNRPVKSKDS SMRLDDWVLCRIYKKSHALSSTSTAAASDQDQEEEETEQFIHDALLPALKSPPSNNTL QPQKSCSFSNLLDAMDYSLLSSFLADNQCNTTGYESSSFSFGNLEQPPVNNYTNSSSS SSMLLQKLPQLNSSIPNMENKLKRQCTSIDEDYLHPSKKLISSCSYSNSASQSDMTQY NFLNQSFFNQSLLLSPHLQFQG" gene complement(36165740..36169191) /locus_tag="TCM_026033" /note="dbxref CacaoGD:Thecc1EG026033" mRNA complement(join(36165740..36166004,36166703..36169191)) /locus_tag="TCM_026033" /product="Pentatricopeptide repeat-containing protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0671s00210.1" /inference="similar to AA sequence:Phytozome:POPTR_0671s00210.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.23 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9938t1" CDS complement(36166993..36168801) /locus_tag="TCM_026033" /codon_start=1 /product="Pentatricopeptide repeat-containing protein, putative" /protein_id="EOY10733.1" /db_xref="Phytozome:POPTR_0671s00210.1" /db_xref="TAIR:AT5G15010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SHK0" /translation="MWGIRFTRSKVYVFSVFANTHLRTIHLKPTQYRNPIFETVGTRR TVANIYPMNFCFPFQLFSFCTSNIGFPSGPKIETFDEHSDNDNDDGEDSENFDGNSVN GSSLSDEAVQDGKAIMDIIRETGSNYVEMKNKLEHCRIRVSSELVVEILSRIRNDWEV AFTFFLWAGKQPGYAHSLRECHSMISILGKMRKFDTAWALIDEMRGGRAGPCLVTPQT LLIMIRRYCAVHDVGRAINTFYAYKKFKFDVGIEEFQSLLSALCRYKNVQDAEHLMFC NKDVFPFNIKSFNIILNGWCNAIGSPRQAERVWREMSKRGVQHDVVSYASVMSCYSKA CNLHKVLKLFSQMKRMGIEPDRKVYNAVIHALAKARHVKEAINLLKTMEEKGIAPNVV TYNSLIKPLCKAQKIDEARQVFDEMLQRDLSPTIRTYHAFFRILRNGEEVFELLEKMR KMGCQPTNDTYIMLIRKFSRWCQFDNVFKLWNEMTEDGVGHDRSSYIVLIHGLFLNGK LDEAYKYYTEMKDKQLLPEPKIDEMLQAWVSGKQFAERQMADLKNNQLLDNQLDEQVR VESKKIDQEKDFLRLPETRRVIRERGFSFWEQSVSM" gene complement(36169221..36174696) /locus_tag="TCM_026034" /note="dbxref CacaoGD:Thecc1EG026034" mRNA complement(join(36169221..36169792,36169905..36170094, 36170181..36170395,36170714..36170805,36171021..36171226, 36171743..36171835,36171928..36171984,36172074..36172202, 36172913..36173422,36174580..36174696)) /locus_tag="TCM_026034" /product="Apyrase 1" /inference="alignment:exonerate- protein:2:ricco:29950.m001176" /inference="similar to AA sequence:ricco:29950.m001176" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14826t1" CDS complement(join(36169683..36169792,36169905..36170094, 36170181..36170395,36170714..36170805,36171021..36171226, 36171743..36171835,36171928..36171984,36172074..36172202, 36172913..36173422,36174580..36174651)) /locus_tag="TCM_026034" /note="dbxref ricco:29950.m001176" /codon_start=1 /product="Apyrase 1" /protein_id="EOY10734.1" /db_xref="TAIR:AT5G18280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JWK8" /translation="MNETFLLRGTFFRLLLFGLLQMSCVTFPINSKIPKLKNLEDLEP LPTTTGNGQIRYRTPSSAELLESGPTGGAQSPTGNGTTDHIEKMMKRSMARHESISDK IHKYRGVLLVISIPIVLITFVLYVMPGKSASNEAVVQGVELNIRKVGANSRGNRNYAV IFDAGSSGSRVHVFCFDQNLDLVPIGSELELFEQIKPGLSFYAKDPQAAANSLRTLLD KAESVVPLDLRSKTPVRVGATAGLRALEGDASDRILHAVSELLKDRSTLKYEANGVRI LDGSQEGAYEWVTINYLLGNLGRTYADTVGIVDLGGGSVQMAYAISENAAAKAPSVPA GEDNFVNEMNLMGSKYHLYVHSYLHYGLLAARAEILKVSEDSGNPCILEGFDGTYKYG GEEFKASASSSGTSMEECRRVTLKALKINETCTHMKCTFGGVWNGGGGDGQKNLFVAS FFFDRAAEAGFIKATDPVAKVQPQYFADAAKRACETKYANAKATYEHVEESNLAYVCM DLVYQYTLLVDGFGLDPYQDITLVKQVKYQNSLVEAAWPLGSAIEAVSS" gene complement(36174615..36177393) /locus_tag="TCM_026035" /note="dbxref CacaoGD:Thecc1EG026035" mRNA complement(join(36174615..36174924,36175765..36176037, 36176882..36177393)) /locus_tag="TCM_026035" /product="Small basic intrinsic protein 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s04640.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045243t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s05030.2" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g10289t00001" CDS complement(join(36174775..36174924,36175765..36176037, 36176882..36177178)) /locus_tag="TCM_026035" /note="paralog of Thecc1EG045243t1" /codon_start=1 /product="Small basic intrinsic protein 1" /protein_id="EOY10735.1" /db_xref="Phytozome:POPTR_0013s05030.2" /db_xref="TAIR:AT3G04090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q107W9" /translation="MGPIKMAIWDMLITFMWVFFASTFGLLTSLIATAIGVQTVTWAP IVITTVIIFVFVFIFNIIGGYLGGASFNPTGTASFYAAGVGDDSLISMALRFPAQAAG AVGGALAIMEVIPEQYKHMIGGPSLQVDTHTGAIAEGVLTFLITFAVLLIILRGPHSE MFKAWLLAIATVALVLAGTSYTGPSMNPANAFGWAYVNSWHNTWDQFYVYWICPFIGA ILAAWVFRLFFPPSPVKVKKA" mobile_element 36178297..36178585 /note="source:scaffold_4_CACTA_0482 6077 6402" /mobile_element_type="transposon:TIR/CACTA" mobile_element 36180334..36180493 /note="source:scaffold_7_CACTA_0779 12497 12678" /mobile_element_type="transposon:TIR/CACTA" mobile_element 36180515..36180963 /note="source:INTACT445_F217_scaffold_8-int 55 540" /mobile_element_type="retrotransposon:LTR/Unclassified" gene 36181296..36183060 /locus_tag="TCM_026036" /note="dbxref CacaoGD:Thecc1EG026036" mRNA join(36181296..36181570,36181865..36183060) /locus_tag="TCM_026036" /product="Syntaxin of plants 111" /inference="alignment:exonerate-protein:2:frave:gene00273" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007960t1" /inference="similar to AA sequence:ricco:29950.m001178" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.35 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03282t00001" CDS 36181894..36182835 /locus_tag="TCM_026036" /note="dbxref ricco:29950.m001178; paralog of Thecc1EG007960t1" /codon_start=1 /product="Syntaxin of plants 111" /protein_id="EOY10736.1" /db_xref="TAIR:AT1G08560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q42374" /translation="MNDLMTKSFMSYVDLKKEAMKDLEAGPDYDLEMSSTANTMDQNL GLFLEEAEKVKQEMAVIRELLGKLQESNEESKSLHKQESLKALRNKINNDIVTVQKKA RTIKSQLEEMDRANAANKRLSGCKEGTLAYRTRIAVTNGLRNKLKELMMDFQGLRQKM MTEYKETVGRRYYTVTGENPDEEIIEKIISDGNGGEEFLTRAIQEHGRGKVLETVVEI QDRHDAAQEIEKSLLELHQVFLDMAVMVEAQGEQMDDIEHHVMNASHYVKDGSKELNT AKQYQRSSRKWMCIGIILLLLIVLVIIIPIATSFSSS" gene complement(36183119..36188111) /locus_tag="TCM_026037" /note="dbxref CacaoGD:Thecc1EG026037" mRNA complement(join(36183119..36183981,36185244..36185635, 36185746..36185842,36186412..36186584,36186701..36187017, 36187916..36188111)) /locus_tag="TCM_026037" /product="Non-photochemical quenching 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01026405001" /inference="similar to AA sequence:Phytozome:POPTR_0013s05000.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaL_g10616t00001" CDS complement(join(36183468..36183981,36185244..36185635, 36185746..36185842,36186412..36186584,36186701..36186988)) /locus_tag="TCM_026037" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Non-photochemical quenching 1 isoform 1" /protein_id="EOY10737.1" /db_xref="Phytozome:POPTR_0013s05000.1" /db_xref="TAIR:AT1G08550.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5T8" /translation="MAQAARSLCFSHDKSVQVPCRTSGLTSNERFHRRQIAHFHGIML VKIQSSGRKARYSQLNKSNPNYSASDLRCSNQLSRRKDRNFSSCSCNRRRPKAEEAFA FLVPTISNVLKEWSQSKIVKVVGLLACAYLVIPSASAVDALKTCTCLLKECRIELAKC IANPSCAANIACLQTCNDRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPQKSDI GEFPVPSPAVLVKNFNIADFSGKWFISSGLNPTFDTFDCQLHEFHTEAGKLVGNLSWR IGTPDGGFFTRSTLQRFVQDPNYPGILYNHDNEYLHYQDDWYIISSKIENKQDDYIFV YYQGRNDAWDGYGGAVVYTRSAVLPESIVPELEKAAKNVGRDFNKFIRTDNTCGPEPP LVERLEKKVEEGEQTLIREVKEIEGEVEKEVKRVEKTEMTLFQKLAEGFKELQQDEEN FLRGLSKEEMGLLNELKMEASEVEKLFGEALPLRKLR" mRNA complement(join(<36183896..36183920,36185244..36185635, 36185746..36185842,36186412..36186584,36186701..36187017, 36187916..36188102)) /locus_tag="TCM_026037" /product="Non-photochemical quenching 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01026405001" /inference="similar to AA sequence:ricco:29950.m001179" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc116t7; inference alignment:Newbler:10:TSA:cgbaL_g10616t00001" CDS complement(join(<36183896..36183920,36185244..36185635, 36185746..36185842,36186412..36186584,36186701..36186988)) /locus_tag="TCM_026037" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29950.m001179" /codon_start=1 /product="Non-photochemical quenching 1 isoform 2" /protein_id="EOY10738.1" /db_xref="TAIR:AT1G08550.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5T8" /translation="MAQAARSLCFSHDKSVQVPCRTSGLTSNERFHRRQIAHFHGIML VKIQSSGRKARYSQLNKSNPNYSASDLRCSNQLSRRKDRNFSSCSCNRRRPKAEEAFA FLVPTISNVLKEWSQSKIVKVVGLLACAYLVIPSASAVDALKTCTCLLKECRIELAKC IANPSCAANIACLQTCNDRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPQKSDI GEFPVPSPAVLVKNFNIADFSGKWFISSGLNPTFDTFDCQLHEFHTEAGKLVGNLSWR IGTPDGGFFTRSTLQRFVQDPNYPGILYNHDNEYLHYQDDWVGMMHGMD" gene 36188816..36192603 /locus_tag="TCM_026038" /note="dbxref CacaoGD:Thecc1EG026038" mRNA join(36188816..36189108,36189416..36189991, 36190080..36190103,36190390..36190851,36191158..36191273, 36191522..36191758,36191848..36192053,36192167..36192603) /locus_tag="TCM_026038" /product="Leucine-rich repeat receptor-like protein kinase" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400009423" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026039t1" /inference="similar to AA sequence:frave:gene16739" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.16 coverage" CDS join(36189006..36189108,36189416..36189991, 36190080..36190103,36190390..36190851,36191158..36191273, 36191522..36191758,36191848..36192053,36192167..36192224) /locus_tag="TCM_026038" /note="dbxref frave:gene16739; paralog of Thecc1EG026039t1" /codon_start=1 /product="Leucine-rich repeat receptor-like protein kinase" /protein_id="EOY10739.1" /db_xref="TAIR:AT1G70530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SHK5" /translation="MRTLYSWLKLALFCFGCFFIYAFSFGSPSPDDPSVVAACLLNFT SYPYQPSGDCIGDNKKIKFWGSISSTLCCRNALTAFAEALAVQAHRTNGDIFIKQGAW RKCDGHFLSQESVSIHSCGFDDFYYGSSQCSSLSLTKIQNEPSYQDALKACTNLGSSF DDSCKICTDTMGNAVENQLELLQMKKNHTERAICGLAVVISVAAAKVDNYSFVADLFS CMSSLDDLDFGYIKLKYALARALVAVVMVIIILMLMLILVKYVIMKKRKSKIKRQLPK PIKSKESNRCSGLYSFSKAEIENAISCNRKRKSLGKGSAGEVFEGILPSGQVVAVKHI NKRNSPDSFKREVAGLSRIRHPNLVSMLGCCIEDDEQYLVLEYCPAGNLAQHLLRNDS GLTWEKRVKILRDCAFALRYLHHYMDGCIVHRDIKDFEPKLSDFGLAKMLGIEESQVF TDVRGTIGYMDPEYMTNAKLTCASDIYSFGIVALQLLSGQKVFELDLDASDQLTRKAK DVSMGKRPSKDFEDPRLKGNLNRVDFESILQIAVLCIAKSSTGRPTIDIVFEEMERAW QNTLADMVWEQRMEYIHQKHPPPHLWI" gene 36194146..36197165 /locus_tag="TCM_026039" /note="dbxref CacaoGD:Thecc1EG026039" mRNA join(36194146..36194908,36194995..36195018, 36195153..36195608,36195743..36195858,36195951..36196211, 36196292..36196492,36196576..36197165) /locus_tag="TCM_026039" /product="Serine-threonine protein kinase, plant-type, putative" /inference="alignment:exonerate- protein:2:ricco:29950.m001180" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026038t1" /inference="similar to AA sequence:ricco:29950.m001180" /note="quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2181t1" CDS join(36194245..36194908,36194995..36195018, 36195153..36195608,36195743..36195858,36195951..36196211, 36196292..36196492,36196576..36196644) /locus_tag="TCM_026039" /note="dbxref ricco:29950.m001180; paralog of Thecc1EG026038t1" /codon_start=1 /product="Serine-threonine protein kinase, plant-type, putative" /protein_id="EOY10740.1" /db_xref="TAIR:AT2G19230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SHK5" /translation="MRIKVLCVLNSAYYVKAIVSILALTKSPLDADCVLDFTSYPYQP SGNCIHGNGKVNLWGSIPSTLCCQNALNTFSEVLAVRAKKTQESSIFIEQDSWRKCDS PFSSQESVSIHSCGFDQFYSGSSQCSSLSLSQIQRNPFYPQAADFCSNLNSSFENTCK NCTDAIAMVVEDLLQLIQGQQNDTERTICNLAVVISVAAANVTDSSFGANLFSCMSSL DDFDSDYIKLKRPLANALLAVFVVIIVLILILVLVKFGNLRKSQSHRKLPKPIPSKDI TTWSGLYRFSKAEIENAISVNYKRKSLGRGSAGEVYQGVLPSGQVVAVKQINKGNSSD SFSREVAGLSRIRHPNLVSLLGCCIEGDEQYLVLEYCSAGNLSQHLLRKDCVLPWERR VKILRDCALGLRYLHNYIDGCIVHRDIKLTNILLTEELEPKLSDFGLAKMLGMEESKV FTDVRGTIGYMDPEYMSNAKLTCASDIYSFGIVALQLLSGQKVIELDLDASEQLTRKA KDVSMGKRPLTDFEDPRLRGNLNRTDFEAILQIAVLCVAKSSRGRPTIDVVFDEMEKA WKNTVADMKTGKEIGPSATPQSRSMELISI" gene complement(36215127..36220151) /locus_tag="TCM_026042" /note="dbxref CacaoGD:Thecc1EG026042" mRNA complement(join(36215127..36215295,36216513..36216719, 36216819..36216938,36217138..36217299,36217388..36217732, 36219992..36220151)) /locus_tag="TCM_026042" /product="Nodulin MtN3 family protein" /inference="alignment:exonerate- protein:2:TAIR:AT2G39060.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026043t1" /inference="similar to AA sequence:frave:gene16739" /note="quality class is strong, express is weak, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.28 coverage" CDS complement(join(36216537..36216719,36216819..36216938, 36217138..36217299,36217388..36217657)) /locus_tag="TCM_026042" /note="dbxref frave:gene16739; paralog of Thecc1EG026043t1" /codon_start=1 /product="Nodulin MtN3 family protein" /protein_id="EOY10741.1" /db_xref="TAIR:AT2G39060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S3W0" /translation="MFCSSNLGTLLISPSAVSVRPTFYQICKKKTAQGYHSIPYMVAL SSAMMLLYYGILKTNAVLIISINVIGCAIEIIYLVLYIIYAPKREKVSTMKFILLFNM GGYGLIILLTNLLTEGSKRVTVMGWICAVYNVAVFASPLSIMRHVVRTKSVEHMPFSL SLFLTLCATMWFFYGLFVMDFFIALPNVLGFLFGIAQMILYVTYKNPNKDVEMQQEVD TELKLSSLEDANPCKADQQQEIREAC" gene complement(36216691..36225408) /locus_tag="TCM_026043" /note="dbxref CacaoGD:Thecc1EG026043" mRNA complement(join(36216691..36216848,36223408..36224031, 36224138..36224257,36224457..36224618,36224707..36224917)) /locus_tag="TCM_026043" /product="Nodulin MtN3 family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s04590.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026042t1" /inference="similar to AA sequence:frave:gene16739" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc2053t7_C2; inference alignment:Newbler:10:TSA:cgbaP2_g00188t00002; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2737t1" mobile_element complement(36220014..36222063) /note="source:INTACT710_F62_scaffold_3-int 5086 7177" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA complement(join(36223444..36224031,36224138..36224257, 36224457..36224618,36224707..36224917,36225015..36225309)) /locus_tag="TCM_026043" /product="Nodulin MtN3 family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s04590.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026042t1" /inference="similar to AA sequence:Phytozome:Glyma18g53250.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00188t00001; inference alignment:Newbler:10:TSA:cgbaP2_g00188t00002; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2737t1" mRNA complement(join(36223467..36224031,36224138..36224257, 36224457..36224618,36224707..36224917,36225015..36225051, 36225183..36225408)) /locus_tag="TCM_026043" /product="Nodulin MtN3 family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s04590.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026042t1" /inference="similar to AA sequence:Phytozome:Glyma18g53250.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00188t00002" CDS complement(join(36223708..36224031,36224138..36224257, 36224457..36224618,36224707..36224917,36225015..36225051, 36225183..36225234)) /locus_tag="TCM_026043" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG026042t1" /codon_start=1 /product="Nodulin MtN3 family protein isoform 1" /protein_id="EOY10742.1" /db_xref="Phytozome:Glyma18g53250.1" /db_xref="TAIR:AT2G39060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S3W0" /translation="MGFLAPHHQLAFIFGLLGNIVSFLVFLAPVPTFYQICKKKTAEG YHSIPYMVALSSAMMLLYYGILKTNAVLIISINVIGCAIEIVYLVLYIIYAPKREKVS TMKFILLFNMGGYGLIILLTNLLTEGSKRVTVMGWICAVYNVAVFASPLSIMRHVVRT KSVEHMPFSLSLFLTLCATMWFFYGLFMMDFFIALPNVLGFLFGIAQMILYVTYKNAN KDVEMQKEVDIELKQGSLEDVNPCKADQQQKMKEIKINVTEKPVESDKMNNVWSRQWR NSKSKLERQSSMSRMEDRYLVRREY" CDS complement(join(36223708..36224031,36224138..36224257, 36224457..36224618,36224707..36224917,36225015..36225082)) /locus_tag="TCM_026043" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG026042t1" /codon_start=1 /product="Nodulin MtN3 family protein isoform 2" /protein_id="EOY10743.1" /db_xref="Phytozome:Glyma18g53250.1" /db_xref="TAIR:AT2G39060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S3W0" /translation="MIFLCFLFYVGNIVSFLVFLAPVPTFYQICKKKTAEGYHSIPYM VALSSAMMLLYYGILKTNAVLIISINVIGCAIEIVYLVLYIIYAPKREKVSTMKFILL FNMGGYGLIILLTNLLTEGSKRVTVMGWICAVYNVAVFASPLSIMRHVVRTKSVEHMP FSLSLFLTLCATMWFFYGLFMMDFFIALPNVLGFLFGIAQMILYVTYKNANKDVEMQK EVDIELKQGSLEDVNPCKADQQQKMKEIKINVTEKPVESDKMNNVWSRQWRNSKSKLE RQSSMSRMEDRYLVRREY" CDS complement(join(36223708..36224031,36224138..36224257, 36224457..36224618,36224707..36224856)) /locus_tag="TCM_026043" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene16739; paralog of Thecc1EG026042t1" /codon_start=1 /product="Nodulin MtN3 family protein isoform 3" /protein_id="EOY10744.1" /db_xref="TAIR:AT2G39060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S3W0" /translation="MVALSSAMMLLYYGILKTNAVLIISINVIGCAIEIVYLVLYIIY APKREKVSTMKFILLFNMGGYGLIILLTNLLTEGSKRVTVMGWICAVYNVAVFASPLS IMRHVVRTKSVEHMPFSLSLFLTLCATMWFFYGLFMMDFFIALPNVLGFLFGIAQMIL YVTYKNANKDVEMQKEVDIELKQGSLEDVNPCKADQQQKMKEIKINVTEKPVESDKMN NVWSRQWRNSKSKLERQSSMSRMEDRYLVRREY" mobile_element 36227442..36230741 /note="source:CACAO_M_E58957_F253_scaffold_9 9 3282" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(36230738..36233452) /note="source:CACAO_M_S_E16721_F36_scaffold_2 17787 20595" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 36233455..36235083 /note="source:INTACT561_F253_scaffold_5-int 2262 3888" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 36235085..36236608 /note="source:CACAO_M_S_E66648_F17_scaffold_5 1 1524" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 36236609..36237565 /note="source:CACAO_M_E58957_F253_scaffold_9 8064 9028" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 36237771..36239973 /note="source:CACAO_PIF_E119_scaffold_3 6784 8945" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 36243705..36245900 /note="source:scaffold_3_CACTA_0383 3288 5464" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(36246972..36248383) /note="source:scaffold_4_CACTA_0482 4497 5900" /mobile_element_type="transposon:TIR/CACTA" gene 36249291..36250868 /locus_tag="TCM_026048" /note="dbxref CacaoGD:Thecc1EG026048" mRNA 36249291..36250868 /locus_tag="TCM_026048" /product="Tyrosine/DOPA decarboxylase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s04970.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026049t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s12150.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc2856t1" CDS 36249575..36250735 /locus_tag="TCM_026048" /note="paralog of Thecc1EG026049t1" /codon_start=1 /product="Tyrosine/DOPA decarboxylase" /protein_id="EOY10745.1" /db_xref="Phytozome:POPTR_0016s12150.1" /db_xref="TAIR:AT2G20340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D2SMM8" /translation="MLCSGFNVVGFNWISSPAATELESIVLDWMGKLLKLPSSFLFSG TGGGVLHGSTCEAAVCTLAAARDKALKELGGWENITKLMVYASDQTHFTFQKAAKLVG IPPSNFRFIETSLSTGFSMSSDQVRLAIEHDIKSGLVPLFLCATIGTTACGAIDPIAE LGKVAREYKLWLHIDAAYAGSACICPELRHFLDGVELANSVSMNPHKWFLTNMDCCCL WIKEPRFLVDSLSTDPEILRNKASEFKAVLDYKDWQVALSRRFRALKLWIVIRRHGLA NLVYHIRSDISMAKRFEAFVAKDDRFEIVVPRKFALVCFRLKPKQELEGAELNCRLLE AINSSGRAFMTHAVVGGIYVIRCAIGTTMTEERHVDALWKLIQEKAQGLLME" mobile_element 36251172..36260126 /note="source:CACAO_M_E44216_F86_scaffold_5 1 8955" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(36261896..36262189) /note="source:CACAO_M_S_E6027_F12_scaffold_2 1 238" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 36263936..36266347 /locus_tag="TCM_026049" /note="dbxref CacaoGD:Thecc1EG026049" mRNA 36263936..36266347 /locus_tag="TCM_026049" /product="Tyrosine/DOPA decarboxylase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s04980.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026048t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s04980.1" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.20 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc2843t1" CDS 36263984..36265453 /locus_tag="TCM_026049" /note="paralog of Thecc1EG026048t1" /codon_start=1 /product="Tyrosine/DOPA decarboxylase" /protein_id="EOY10746.1" /db_xref="Phytozome:POPTR_0013s04980.1" /db_xref="TAIR:AT2G20340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D2SMM8" /translation="MSSASRKTFLPLEPTSFTNESKAVIDFIADYYKNIEEYPVQSGV EPGYLSAKLPDSAPYCPESLEDILKDVNDCIIPGLTHWQSPNFFAYFQANASTAGFLG EMLCSGFNVVGFNWISSPAATELESIVLDWMGKLLKLPSSFLFSGTGGGVLHGSTCEA AVCTLAAARDKALKELGGWENITKLMVYASDQTHFTFQKAAKLVGIPPSNFRFIETSL STGFSMSSDQVRLAIEHDIKSGLVPLFLCATIGTTACGAIDPIAELGQVAREYKLWLH IDAAYAGSACICPELRHFLDGVELANSVSMNPHKWFLTNMDCCCLWITEPRLLVDSLS TDPEILRNKASEFKAVLDYKDWQVALSRRFRALKLWIVIRRHGLANLVYHIRSDISMA ERFEAFVAKDDRFDIVVPRKFALVCFRLKPKQELEGLELNSRLLEAINSSGRAFMTHA VVGGIYVIRCAIGTTMTEERHVDALWKLIQEKAQGLLME" mobile_element 36267634..36267814 /note="source:INTACT88_F12_scaffold_4-int 19450 19605" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 36269716..36271166 /locus_tag="TCM_026050" /note="dbxref CacaoGD:Thecc1EG026050" mRNA join(36269716..36270224,36270338..36270672, 36270827..36271166) /locus_tag="TCM_026050" /product="Tyrosine/DOPA decarboxylase, putative" /inference="alignment:exonerate- protein:2:ricco:29439.m000226" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026048t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s12150.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9964t1" CDS join(36270051..36270224,36270338..36270672, 36270827..36270959) /locus_tag="TCM_026050" /note="paralog of Thecc1EG026048t1" /codon_start=1 /product="Tyrosine/DOPA decarboxylase, putative" /protein_id="EOY10747.1" /db_xref="Phytozome:POPTR_0016s12150.1" /db_xref="TAIR:AT4G28680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D2SMM8" /translation="MLCPGFNVVGFNWISSPAATELESIVLDWMGKLLKLPSSFLFSG TGGGVLHGSTCEATATKLVGIPPSNFRFIETSFSTGFSMSTEQVRLAIEHDIKSGLVP LFLCATIGTTACGAIDPIAELGKVARKYKLWLHIDAAYAGSACICPELRHCLDGVELA NSISMNPHKCDISMAKRFAAFVAEDDRFEIVVPRKFVLVASGLSPSKSLKAQN" mobile_element 36271694..36271761 /note="source:CACAO_M_S_E90022_F9_scaffold_8 3087 3156" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(36273015..36276659) /locus_tag="TCM_026051" /note="dbxref CacaoGD:Thecc1EG026051" mRNA complement(join(36273015..36273853,36273977..36274077, 36274546..36274679,36275135..36275185,36276114..36276659)) /locus_tag="TCM_026051" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s04950.2" /inference="similar to AA sequence:Phytozome:POPTR_0013s04950.2" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g06693t00001" CDS complement(join(36273672..36273853,36273977..36274077, 36274546..36274679,36275135..36275185,36276114..36276482)) /locus_tag="TCM_026051" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10748.1" /db_xref="Phytozome:POPTR_0013s04950.2" /db_xref="TAIR:AT1G08530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5T5" /translation="MKLNLFLNPNPTSNSLLPFFSFPSKTKNQIPLLKSPTSLSIFSK PTPCFIPLCSSNPSTNSTSKESSLESNGWPQTSKFNIGDESKENYNVGVGNPIVPSFF STQKMSLSDQAFFLWAFIACTTSVAFTSLVIVAVPTLYAMGRAAISLSKLADTAREEL PSTMAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQAVQAAEAGIRQIGSLAHQQTM SMIQERASLPIISLQPVVAGAARKTSRAVGQATKTIMNIIYRGEFSSEHDEDSGIDQV EN" gene complement(36276941..36281125) /locus_tag="TCM_026052" /note="dbxref CacaoGD:Thecc1EG026052" mRNA complement(join(36276941..36277433,36277789..36278058, 36278525..36278632,36278964..36279044,36279144..36279324, 36279708..36279870,36279979..36280319,36280939..36281125)) /locus_tag="TCM_026052" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400009420" /inference="similar to AA sequence:Phytozome:GSVIVT01026376001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:PASA:2:TSA:puevd3b025198t1a2; alternateUTRof:Thecc1EG026052t1; inference alignment:Newbler:10:TSA:cgbaP2_g05969t00001" mRNA complement(join(36276941..36277433,36277789..36278058, 36278525..36278632,36278964..36279044,36279144..36279324, 36279708..36279870,36279979..36280319,36280932..36281061)) /locus_tag="TCM_026052" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400009420" /inference="similar to AA sequence:Phytozome:GSVIVT01026376001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05969t00001" mRNA complement(join(36277207..36277433,36277789..36278058, 36278525..36278632,36278964..36279044,36279144..36279324, 36279708..36279870,36279979..36280319,36280511..36280784)) /locus_tag="TCM_026052" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400009420" /inference="similar to AA sequence:Phytozome:GSVIVT01026376001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc7t13; alternateUTRof:Thecc1EG026052t1; inference alignment:Newbler:10:TSA:cgbaP2_g05969t00001" CDS complement(join(36277335..36277433,36277789..36278058, 36278525..36278632,36278964..36279044,36279144..36279324, 36279708..36279870,36279979..36280279)) /locus_tag="TCM_026052" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY10749.1" /db_xref="Phytozome:GSVIVT01026376001" /db_xref="TAIR:AT2G38430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPK9" /translation="MAYIPPHKRHSKDSERPTPTPESFVPIFKRNVHLRAPKPNVDRS GKIVYSNHAISRWFAVGLDDGNSDSSAACLEPVSVESMERKTGEKPVILVKSNVDKEN NEVKGSPWSSVAENVLPDLLSSFQIARAEVESQDLKEVKPTLVARFGKILFHGSPSMN LESVRKDCVTETTLRNLKRSFYTSLPTSYVGNIMAEVVPEIGVDFAEVKDIYHVKLSD STRLDSTISCKCTVKDDKNLQLYKVELNQVRDMVVDISCPDMDLDLRLMLCHKRILTS LTDDEIQNIRNLIDSAVLDPDVKGGLRWPLGKASTGDRYSVVGVWHTMATTYQGSSMR LKVRYADRFDFRTAYGESSKEVVLKLKGMVSGLLEQEAETNVISDMLKDTLRLIWQHF LCCEPFLS" CDS complement(join(36277335..36277433,36277789..36278058, 36278525..36278632,36278964..36279044,36279144..36279324, 36279708..36279870,36279979..36280279)) /locus_tag="TCM_026052" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY10750.1" /db_xref="Phytozome:GSVIVT01026376001" /db_xref="TAIR:AT2G38430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPK9" /translation="MAYIPPHKRHSKDSERPTPTPESFVPIFKRNVHLRAPKPNVDRS GKIVYSNHAISRWFAVGLDDGNSDSSAACLEPVSVESMERKTGEKPVILVKSNVDKEN NEVKGSPWSSVAENVLPDLLSSFQIARAEVESQDLKEVKPTLVARFGKILFHGSPSMN LESVRKDCVTETTLRNLKRSFYTSLPTSYVGNIMAEVVPEIGVDFAEVKDIYHVKLSD STRLDSTISCKCTVKDDKNLQLYKVELNQVRDMVVDISCPDMDLDLRLMLCHKRILTS LTDDEIQNIRNLIDSAVLDPDVKGGLRWPLGKASTGDRYSVVGVWHTMATTYQGSSMR LKVRYADRFDFRTAYGESSKEVVLKLKGMVSGLLEQEAETNVISDMLKDTLRLIWQHF LCCEPFLS" CDS complement(join(36277335..36277433,36277789..36278058, 36278525..36278632,36278964..36279044,36279144..36279324, 36279708..36279870,36279979..36280279)) /locus_tag="TCM_026052" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY10751.1" /db_xref="Phytozome:GSVIVT01026376001" /db_xref="TAIR:AT2G38430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPK9" /translation="MAYIPPHKRHSKDSERPTPTPESFVPIFKRNVHLRAPKPNVDRS GKIVYSNHAISRWFAVGLDDGNSDSSAACLEPVSVESMERKTGEKPVILVKSNVDKEN NEVKGSPWSSVAENVLPDLLSSFQIARAEVESQDLKEVKPTLVARFGKILFHGSPSMN LESVRKDCVTETTLRNLKRSFYTSLPTSYVGNIMAEVVPEIGVDFAEVKDIYHVKLSD STRLDSTISCKCTVKDDKNLQLYKVELNQVRDMVVDISCPDMDLDLRLMLCHKRILTS LTDDEIQNIRNLIDSAVLDPDVKGGLRWPLGKASTGDRYSVVGVWHTMATTYQGSSMR LKVRYADRFDFRTAYGESSKEVVLKLKGMVSGLLEQEAETNVISDMLKDTLRLIWQHF LCCEPFLS" gene complement(36283941..36286091) /locus_tag="TCM_026054" /note="dbxref CacaoGD:Thecc1EG026054" mRNA complement(join(36283941..36284784,36285069..36285198, 36285821..36286091)) /locus_tag="TCM_026054" /product="Myb domain protein 113, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g16980.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019192t1" /inference="similar to AA sequence:Phytozome:Glyma18g41520.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g09385t00001" CDS complement(join(36284328..36284784,36285069..36285198, 36285821..36285920)) /locus_tag="TCM_026054" /note="paralog of Thecc1EG019192t1" /codon_start=1 /product="Myb domain protein 113, putative" /protein_id="EOY10752.1" /db_xref="Phytozome:Glyma18g41520.1" /db_xref="TAIR:AT1G66370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B7FJL2" /translation="MGGVAWTEEEDHLLKKCIEQYGEGKWHRVPLLAGLNRCRKSCRL RWLNYLRPNIKRGSFAKEEVQLIIKLHRLLGNRWSLIAGRLPGRTANDVKNYWNCHLS KKLNIGQETEEKENAINAVIRPQPGGNATTGSVKPRSQDIVPNSQLTIEESSMSTPFH FVEVAQQGQELVKEEDSSLGVEEPGILGDMRTDIGQFHELNILSTDEGCGKWDWDDLV LDMDLWTDSM" gene 36291571..36294060 /locus_tag="TCM_026055" /note="dbxref CacaoGD:Thecc1EG026055" mRNA join(36291571..36291797,36291918..36292127, 36292902..36293153,36293846..36294060) /locus_tag="TCM_026055" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:TAIR:AT5G18310.2" /inference="similar to AA sequence:ricco:29950.m001184" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g06917t00001" CDS join(36291792..36291797,36291918..36292127, 36292902..36293153,36293846..36293896) /locus_tag="TCM_026055" /note="dbxref ricco:29950.m001184" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10753.1" /translation="MDDYCKRSGQIPAFGDWDYANELPITQYFECARQAGLIRFSSSS GESNPYVPADLYAVDSRKHSRNLDPPRKVSRVREKRGLHVKEQKKAGRVCDVTEPPRK YQHQHPHHVPTLNNNNNNSGKQLKNDAAPPRRPPKPVDEDLYKXXXXXXXXXXXKKMP GFFSCLVPACAT" mobile_element complement(36293225..36293292) /note="source:CACAO_M_S_E52697_F28_scaffold_5 6045 6110" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 36295190..36295767 /note="source:CACAO_M_S_E15301_F28_scaffold_2 1 577" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 36297030..36297609 /note="source:CACAO_M_S_E66654_F336_scaffold_5 1 580" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 36299165..36299326 /note="source:CACAO_M_E52278_F17_scaffold_7 2697 2866" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(36299183..36299627) /note="source:CACAO_M_E34540_F17_scaffold_5 8769 9193" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(36299271..36313615) /locus_tag="TCM_026057" /note="dbxref CacaoGD:Thecc1EG026057" mRNA complement(join(36299271..36299293,36308026..36309289, 36310661..36310930,36313204..36313615)) /locus_tag="TCM_026057" /product="U-box domain-containing protein 9" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400007983" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026061t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s04500.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.23 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9986t1" gene complement(36299327..36300361) /locus_tag="TCM_026058" /note="dbxref CacaoGD:Thecc1EG026058" mRNA complement(join(36299327..36299524,36299890..36300361)) /locus_tag="TCM_026058" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc7804t2" CDS complement(join(36299513..36299524,36299890..36300174)) /locus_tag="TCM_026058" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10755.1" /translation="MWATNNGSPLPKQNPHFFIWAATTRKPTPSNIKPPSHSNFVPYF FMQNFGLFCLLFYPLLSVSSLLFHSPLFLFHLDSSIPITHIYFQDFCSRFQGCQ" mobile_element complement(36299621..36299680) /note="source:CACAO_M_E34540_F17_scaffold_5 7831 7890" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(36300299..36304756) /note="source:INTACT528_F17_scaffold_6-int 1 5893" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(36305468..36305618) /note="source:scaffold_4_CACTA_0483 15361 15514" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(36308204..36309289,36310661..36310930, 36313204..36313218)) /locus_tag="TCM_026057" /note="paralog of Thecc1EG026061t1" /codon_start=1 /product="U-box domain-containing protein 9" /protein_id="EOY10754.1" /db_xref="Phytozome:POPTR_0019s04500.1" /db_xref="TAIR:AT3G07360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SRT0" /translation="MSLVEFLSMAKTESAAAGEETELKKELGRVVTTILEEEDIGLKT IEATRILCNLAELKLKKPVGLGVDDAVMPEKFKCPLSGERMGDPVILASGQTFDRPHI QKWLNEGNLTCPLSKQVLSHTILTPNYLVRELISDWCIRHGIALPKSYQDVDGNMNTE VDQIYLNSLLERMSSCISDQKEAAKELRRLTKTTRSYRAVFCEFTDAISRLLSPLLQS KVELDPSVQEDLITTVLNLSIHGNNKKLIAENPIVIPVLIESMKFGTIETRRNAAAAL FSLSALDSNKFIIGNSGALVPLLELLHERHPLAMIDAASAIFSLCIVSENRAKFIEIG IVKVMLQKIKDGIFVDELLSLLALLSTDQNVVEELGDLDTLRWLLQIIRDSSSKLAKE NCVAILYNVCLKDLTMLMVIRAEEIKKHTLAEIVDTGTARARRKASGIIKKIHKVFPA IQSLRK" mobile_element 36312116..36312431 /note="source:CACAO_PIF_E119_scaffold_3 1965 2285" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(36313334..36334243) /locus_tag="TCM_026062" /note="dbxref CacaoGD:Thecc1EG026062" mRNA complement(join(36313334..36313383,36318684..36318706, 36318773..36318839,36318861..36318935,36329349..36329631, 36330764..36331536,36331928..36332035,36332433..36332547, 36332848..36334243)) /locus_tag="TCM_026062" /product="U11/U12 small nuclear ribonucleoprotein 48 kDa protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29950.m001185" /inference="similar to AA sequence:ricco:29950.m001185" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc605t2; alternateUTRof:Thecc1EG026062t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc605t3" mobile_element 36313413..36318795 /note="source:INTACT752_F321_scaffold_5-int 1 5383" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(36320639..36320867) /note="source:CACAO_PIF_E119_scaffold_3 4406 4670" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 36321100..36323378 /locus_tag="TCM_026060" /note="dbxref CacaoGD:Thecc1EG026060" mRNA join(36321100..36321129,36321643..36321754, 36322394..36322447,36322703..36322807,36323310..36323378) /locus_tag="TCM_026060" /product="Uncharacterized protein isoform 1" /inference="similar to AA sequence:Phytozome:GSVIVT01029768001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14817t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14817t2" mRNA join(36321166..36321235,36321643..36321754, 36322394..36322447,36322703..>36322729) /locus_tag="TCM_026060" /product="Uncharacterized protein isoform 2" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc385t1_C2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14817t2" mRNA join(36321166..36321235,36321643..36321754, 36322394..36322447,36322708..>36322729) /locus_tag="TCM_026060" /product="Uncharacterized protein isoform 3" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc385t2_C2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14817t2" CDS join(36321679..36321754,36322394..36322447, 36322703..36322764) /locus_tag="TCM_026060" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY10760.1" /db_xref="Phytozome:GSVIVT01029768001" /translation="MAELSLGILIDIVDEEWMRDTLPDDDLPLPAVMVARTDDTEDSN QETQQVDGNTWHDLELSTQ" CDS join(36321679..36321754,36322394..36322447, 36322703..>36322728) /locus_tag="TCM_026060" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY10761.1" /translation="MAELSLGILIDIVDEEWMRDTLPDDDLPLPAVMVARTDDTEDSN QETQQVDG" CDS join(36321679..36321754,36322394..36322447, 36322708..>36322727) /locus_tag="TCM_026060" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY10762.1" /translation="MAELSLGILIDIVDEEWMRDTLPDDDLPLPAVMVARTDDTEDSR DSASGW" mRNA join(<36321700..36321754,36322394..36322447, 36322708..36322807,36323310..36323337) /locus_tag="TCM_026060" /product="Uncharacterized protein isoform 4" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc302t2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14817t2" CDS join(<36321700..36321754,36322394..36322447, 36322708..36322742) /locus_tag="TCM_026060" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY10763.1" /translation="ILIDIVDEEWMRDTLPDDDLPLPAVMVARTDDTEDSRDSASGWK HLA" gene complement(36325231..36330232) /locus_tag="TCM_026061" /note="dbxref CacaoGD:Thecc1EG026061" mRNA complement(join(36325231..36326512,36327478..36327754, 36329596..36330232)) /locus_tag="TCM_026061" /product="U-box domain-containing protein 9" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026057t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s04500.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g9998t1" CDS complement(join(36325427..36326512,36327478..36327754, 36329596..36329789)) /locus_tag="TCM_026061" /note="paralog of Thecc1EG026057t1" /codon_start=1 /product="U-box domain-containing protein 9" /protein_id="EOY10764.1" /db_xref="Phytozome:POPTR_0019s04500.1" /db_xref="TAIR:AT3G07360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SRT0" /translation="MLSSLSLLLLLSLSSFTVVMLSLHILAVLHLHVVWKGCLLEFNL LTAHVLTCRWQGVTFGNNFVRTWFLSMAKTESAAVGEETELKKELQRVVKTILEEDDI GLKTIEATRILSNLAELKLKKPVGIRLDDTIFPEKFKCPLSGEIMGDPVVLSSGQTYD RPNIQKWLNEGNLTCPLSKQVLSHTILIPNCLVRELILHWSKERGIALPKSYQDVDGD MNAEVDRIYLNSLLEKMSSSLSDQKEAAKELRRLTKTAPSYRAVFCEFTDAISRLLSP LSQSKVESDPGLQEDLITTVLNLSIHGNNKKLIAENPVVIPLLIESMKFGTIETRRNA AAALFSLSALDSNKFIIGNSGALVPLLELLREGHPLALMDAASAIFNLCFVSENKAKF IEIGIVKVMLQKIKDGIFVDELLGILALLSTHHDAVDELGDFDTLRWLFQIIRDSHSE RTRENCVSILYNVCSKDLNMLMVIRAEEIKKCTLAELADTGTTRARRKASGIIEKIHK AFPTTQSLRK" mRNA complement(join(36329347..36330658,36330764..36331536, 36331928..36332035,36332433..36332547,36332848..36334243)) /locus_tag="TCM_026062" /product="U11/U12 small nuclear ribonucleoprotein 48 kDa protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29950.m001185" /inference="similar to AA sequence:ricco:29950.m001185" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc590t6; alternateUTRof:Thecc1EG026062t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc605t3" mRNA complement(join(36329604..36329631,36329852..36330658, 36330764..36331536,36331928..36332035,36332433..36332547, 36332848..36334243)) /locus_tag="TCM_026062" /product="U11/U12 small nuclear ribonucleoprotein 48 kDa protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29950.m001185" /inference="similar to AA sequence:ricco:29950.m001185" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc605t3; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc605t3" mRNA complement(join(36329604..36329631,36329852..36331536, 36331928..36332035,36332433..36332547,36332848..36334243)) /locus_tag="TCM_026062" /product="U11/U12 small nuclear ribonucleoprotein 48 kDa protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29950.m001185" /inference="similar to AA sequence:ricco:29950.m001185" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc605t4; alternateUTRof:Thecc1EG026062t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc605t3" CDS complement(join(36330847..36331536,36331928..36332035, 36332433..36332547,36332848..36334157)) /locus_tag="TCM_026062" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29950.m001185" /codon_start=1 /product="U11/U12 small nuclear ribonucleoprotein 48 kDa protein, putative isoform 1" /protein_id="EOY10756.1" /db_xref="TAIR:AT3G04160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SHL0" /translation="MNPSSIQPSLPSQNPNPNSTIPSLPQNSNLNGPSSLSTTLSSLT ALLSLSHQTLNSHSTLTKSLNPNLIPCPFNPNHLLAPESLFSHSLRCPSPQNLDLYPP NYRNTLIPPSNLHAQDTHFQGIQCSELCLSLDEYFADFGSNFFCKDCPAAVNLFDIDN SKKTFTLPGFLSVECVNFEGFNEREGVVSEEKGLRVLASGLWEIRREVERWGDYPGSY SFNVICAILGSKMVKGSNLRKWIVANSPRYGVMIDGCMGDHIVVLVRLCLKAVVREAV GLMEVEMGYGEAKEKEWDVNLQMRMFECPILLQVLVWLGSQLSVLYGDVNGKFFAINM IKQCVLEGASLLLLFPLEEKVTDSHNLGQESQSLDANGVKEIKLEETIEQSNEPVETV NETIGVGVIFVSQVAAAVAALHERCFLEEKIKHLRGLQQLSRYQRMAEHAYVSERADA ERKKRPNYRPIIDHDGLPRQASSNGETSTTKTREEILAEERDYKRRRMSYRGKKLKRT ALQVMRDIIEEYTEEIKKAGRIGCFVKGVEEEGLLPSESPVPYDRAVDADQHKKGTSD ISEAARRSPNHCRRRSHDDQHTRSTRLEDSSRNGHHDLLEDSRSMSKEKHRDEYHSGI SKRYRSHGRSDEQRSHRRERDDAESTRSTHYESGRRSSISKYKDYKSSYSASNSSDDF HVRKDDQKLDARDKNRRTLYENHTPGSWVQNGFDDRYNPSESDDMYEDDVFVKYVRPE " CDS complement(join(36330847..36331536,36331928..36332035, 36332433..36332547,36332848..36334157)) /locus_tag="TCM_026062" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29950.m001185" /codon_start=1 /product="U11/U12 small nuclear ribonucleoprotein 48 kDa protein, putative isoform 1" /protein_id="EOY10757.1" /db_xref="TAIR:AT3G04160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SHL0" /translation="MNPSSIQPSLPSQNPNPNSTIPSLPQNSNLNGPSSLSTTLSSLT ALLSLSHQTLNSHSTLTKSLNPNLIPCPFNPNHLLAPESLFSHSLRCPSPQNLDLYPP NYRNTLIPPSNLHAQDTHFQGIQCSELCLSLDEYFADFGSNFFCKDCPAAVNLFDIDN SKKTFTLPGFLSVECVNFEGFNEREGVVSEEKGLRVLASGLWEIRREVERWGDYPGSY SFNVICAILGSKMVKGSNLRKWIVANSPRYGVMIDGCMGDHIVVLVRLCLKAVVREAV GLMEVEMGYGEAKEKEWDVNLQMRMFECPILLQVLVWLGSQLSVLYGDVNGKFFAINM IKQCVLEGASLLLLFPLEEKVTDSHNLGQESQSLDANGVKEIKLEETIEQSNEPVETV NETIGVGVIFVSQVAAAVAALHERCFLEEKIKHLRGLQQLSRYQRMAEHAYVSERADA ERKKRPNYRPIIDHDGLPRQASSNGETSTTKTREEILAEERDYKRRRMSYRGKKLKRT ALQVMRDIIEEYTEEIKKAGRIGCFVKGVEEEGLLPSESPVPYDRAVDADQHKKGTSD ISEAARRSPNHCRRRSHDDQHTRSTRLEDSSRNGHHDLLEDSRSMSKEKHRDEYHSGI SKRYRSHGRSDEQRSHRRERDDAESTRSTHYESGRRSSISKYKDYKSSYSASNSSDDF HVRKDDQKLDARDKNRRTLYENHTPGSWVQNGFDDRYNPSESDDMYEDDVFVKYVRPE " CDS complement(join(36330847..36331536,36331928..36332035, 36332433..36332547,36332848..36334157)) /locus_tag="TCM_026062" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29950.m001185" /codon_start=1 /product="U11/U12 small nuclear ribonucleoprotein 48 kDa protein, putative isoform 1" /protein_id="EOY10758.1" /db_xref="TAIR:AT3G04160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SHL0" /translation="MNPSSIQPSLPSQNPNPNSTIPSLPQNSNLNGPSSLSTTLSSLT ALLSLSHQTLNSHSTLTKSLNPNLIPCPFNPNHLLAPESLFSHSLRCPSPQNLDLYPP NYRNTLIPPSNLHAQDTHFQGIQCSELCLSLDEYFADFGSNFFCKDCPAAVNLFDIDN SKKTFTLPGFLSVECVNFEGFNEREGVVSEEKGLRVLASGLWEIRREVERWGDYPGSY SFNVICAILGSKMVKGSNLRKWIVANSPRYGVMIDGCMGDHIVVLVRLCLKAVVREAV GLMEVEMGYGEAKEKEWDVNLQMRMFECPILLQVLVWLGSQLSVLYGDVNGKFFAINM IKQCVLEGASLLLLFPLEEKVTDSHNLGQESQSLDANGVKEIKLEETIEQSNEPVETV NETIGVGVIFVSQVAAAVAALHERCFLEEKIKHLRGLQQLSRYQRMAEHAYVSERADA ERKKRPNYRPIIDHDGLPRQASSNGETSTTKTREEILAEERDYKRRRMSYRGKKLKRT ALQVMRDIIEEYTEEIKKAGRIGCFVKGVEEEGLLPSESPVPYDRAVDADQHKKGTSD ISEAARRSPNHCRRRSHDDQHTRSTRLEDSSRNGHHDLLEDSRSMSKEKHRDEYHSGI SKRYRSHGRSDEQRSHRRERDDAESTRSTHYESGRRSSISKYKDYKSSYSASNSSDDF HVRKDDQKLDARDKNRRTLYENHTPGSWVQNGFDDRYNPSESDDMYEDDVFVKYVRPE " CDS complement(join(36330847..36331536,36331928..36332035, 36332433..36332547,36332848..36334157)) /locus_tag="TCM_026062" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29950.m001185" /codon_start=1 /product="U11/U12 small nuclear ribonucleoprotein 48 kDa protein, putative isoform 1" /protein_id="EOY10759.1" /db_xref="TAIR:AT3G04160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SHL0" /translation="MNPSSIQPSLPSQNPNPNSTIPSLPQNSNLNGPSSLSTTLSSLT ALLSLSHQTLNSHSTLTKSLNPNLIPCPFNPNHLLAPESLFSHSLRCPSPQNLDLYPP NYRNTLIPPSNLHAQDTHFQGIQCSELCLSLDEYFADFGSNFFCKDCPAAVNLFDIDN SKKTFTLPGFLSVECVNFEGFNEREGVVSEEKGLRVLASGLWEIRREVERWGDYPGSY SFNVICAILGSKMVKGSNLRKWIVANSPRYGVMIDGCMGDHIVVLVRLCLKAVVREAV GLMEVEMGYGEAKEKEWDVNLQMRMFECPILLQVLVWLGSQLSVLYGDVNGKFFAINM IKQCVLEGASLLLLFPLEEKVTDSHNLGQESQSLDANGVKEIKLEETIEQSNEPVETV NETIGVGVIFVSQVAAAVAALHERCFLEEKIKHLRGLQQLSRYQRMAEHAYVSERADA ERKKRPNYRPIIDHDGLPRQASSNGETSTTKTREEILAEERDYKRRRMSYRGKKLKRT ALQVMRDIIEEYTEEIKKAGRIGCFVKGVEEEGLLPSESPVPYDRAVDADQHKKGTSD ISEAARRSPNHCRRRSHDDQHTRSTRLEDSSRNGHHDLLEDSRSMSKEKHRDEYHSGI SKRYRSHGRSDEQRSHRRERDDAESTRSTHYESGRRSSISKYKDYKSSYSASNSSDDF HVRKDDQKLDARDKNRRTLYENHTPGSWVQNGFDDRYNPSESDDMYEDDVFVKYVRPE " mobile_element 36336689..36345213 /note="source:CACAO_M_S_E66657_F76_scaffold_5 1 8525" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 36336863..36348253 /locus_tag="TCM_026063" /note="dbxref CacaoGD:Thecc1EG026063" mRNA join(36336863..36336954,36346177..36346246, 36347185..36347324,36347472..36348253) /locus_tag="TCM_026063" /product="Germin-like protein subfamily 1 member 18" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031085001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026076t1" /inference="similar to AA sequence:Phytozome:GSVIVT01000071001" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc74t9" CDS join(36346182..36346246,36347185..36347324, 36347472..36348025) /locus_tag="TCM_026063" /note="paralog of Thecc1EG026076t1" /codon_start=1 /product="Germin-like protein subfamily 1 member 18" /protein_id="EOY10765.1" /db_xref="Phytozome:GSVIVT01000071001" /db_xref="TAIR:AT5G39190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SFF9" /translation="MTKFIPYFGGHFVNCKSKKETILALVIMKGHYFLVAFAFLALAS SLASAYDPSPLQDICVAINDTKTGIFVNGKFCKDPKLATAEDFFFSGLNVPRNTTNPV GSVVTPVNVDQILGLNTLGISLVRIDYAPYGGQNPPHIHPRGTEILVVLEGTLYVGFV TSNPDNRLISKVLYPGDVFVFPIGLIHFQQNVGKTNAVAFAGLSSQNPGVITIANAVF GSNPPINPDVLTRAFQLDNKVVKYLQSRFWWKNK" gene 36349233..36351949 /locus_tag="TCM_026064" /note="dbxref CacaoGD:Thecc1EG026064" mRNA join(36349233..36349487,36349760..36349826, 36351352..36351949) /locus_tag="TCM_026064" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(36349314..36349487,36349760..36349826, 36351352..36351557) /locus_tag="TCM_026064" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10766.1" /translation="MSEMNQEPDFEVPNQEEDNPQLQESINLDSFNNIIVLLCMLMVE AEDNGGADETDESTDDGELDCEEAVRVQKIGKRGPSGETVNGVMPFSNENTILDNNIA TLEGDTATLKDNTASDEGNEDCFLPVKIDLMTIQMIGLINGMIKFR" gene 36352033..36353232 /locus_tag="TCM_026065" /note="dbxref CacaoGD:Thecc1EG026065" mRNA join(36352033..36352240,36352327..36353232) /locus_tag="TCM_026065" /product="Germin-like protein 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026063t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s04290.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc77t10" CDS join(36352114..36352240,36352327..36352865) /locus_tag="TCM_026065" /note="paralog of Thecc1EG026063t1" /codon_start=1 /product="Germin-like protein 2" /protein_id="EOY10767.1" /db_xref="Phytozome:POPTR_0019s04290.1" /db_xref="TAIR:AT5G39190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SFF9" /translation="MKGAYFILGFILLILASSFASACDPSPLQDFCVAINDTKKGSVI VNGKFCKDPKLATVNDFFFSGLNIPKNTSNSVGSVVTPVNVDQIPGLNTLGISLVRID YAPNGGLNPPHTHPRGTEILVVLEGTLYVGFVTSNPNNRLISKILSPGDVFVFPIGLI HFQQNVGKTNAVAFAGLSSQNPGVITIANAVFGSNPPINPDVLTGAFQLDKKVVKYLQ SRF" mobile_element 36357526..36357984 /note="source:INTACT85_F9_scaffold_4-int 1 448" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 36357923..36359105 /locus_tag="TCM_026067" /note="dbxref CacaoGD:Thecc1EG026067" mRNA join(36357923..36358366,36358758..36359105) /locus_tag="TCM_026067" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026335t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(36357944..36358366,36358758..36358991) /locus_tag="TCM_026067" /note="paralog of Thecc1EG026335t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10768.1" /translation="MIRRTIAGMKILKMIFKESLCFDVETECLMPMPMREPIRWYNGF RYFGESRGYLHLVIGRKPAWRLIFRIYEMLVDYSDWFIKYRIDLEAEMQSFNLIPSYR NYNTFCLVVRSDDDKGDSVVAVLESGMTLYYNFRDEEMEDYQVVRGISLVNYVLSPTI IDLGFLAVALAALSSQNPGVITIAINAVFGSDPAINPDLLAKAFKLDRKMVKNLQSKF " gene complement(36359172..36362528) /locus_tag="TCM_026068" /note="dbxref CacaoGD:Thecc1EG026068" mRNA complement(join(36359172..36359532,36359750..36359846, 36360485..36361016,36361194..36361577,36362381..36362528)) /locus_tag="TCM_026068" /product="Germin-like protein subfamily 1 member 18" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000098001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026071t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s04330.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.18 coverage" CDS complement(join(36359392..36359532,36359750..36359846, 36360485..36361016,36361194..36361320)) /locus_tag="TCM_026068" /note="paralog of Thecc1EG026071t1" /codon_start=1 /product="Germin-like protein subfamily 1 member 18" /protein_id="EOY10769.1" /db_xref="Phytozome:POPTR_0019s04330.1" /db_xref="TAIR:AT3G05950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SFF9" /translation="MMKGAQILVAFVLLALASSLASAFDPSPLQDFCVAINDTKNGVF VNGKFCKDPKLVNAEDFFFSGLNKQGNTSNQLGSKVTLVNVGQISGLNTLGISLARVD YAPYGGLNPPHTHPRATEILVVVEGTLYVGFVTSNPDNRLITKVLYPGDVFVFPVGLI HFQFNIGNTNAVAFSGLSSQNPGINTIAKAVFGSNPAINPEVLAKAFQLDKNIVNQLQ SRLRIMKERMKQMSQCCDEATREDGDVCTTEAIKDDGELDCEEAVRVENIGKCWDLHV KCPRGKGYQILLSRQNCYYKHF" gene 36362595..36365298 /locus_tag="TCM_026069" /note="dbxref CacaoGD:Thecc1EG026069" mRNA join(36362595..36362781,36363328..36363387, 36364187..36364229,36364579..36364734,36364868..36365298) /locus_tag="TCM_026069" /product="RmlC-like cupins superfamily protein, putative" /inference="alignment:exonerate-protein:2:frave:gene20194" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026073t1" /inference="similar to AA sequence:ricco:28830.m000227" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(36362656..36362781,36363328..36363387, 36364187..36364229,36364579..36364734,36364868..36365079) /locus_tag="TCM_026069" /note="dbxref ricco:28830.m000227; paralog of Thecc1EG026073t1" /codon_start=1 /product="RmlC-like cupins superfamily protein, putative" /protein_id="EOY10770.1" /db_xref="TAIR:AT5G39110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AWE4" /translation="MKGAHLLLAYSLLALSSSFAYASGPSPLQDFCVANGDVKDVLFG SDQMPKQGVFEYVMKHAKRPNTWVAEDLINPKVFVNGKFCEDPKLAKAEDFTVSGLNV PRNTSNPVGSTVTPVNVAQIPGLDTLDNRLITQILYLGDLFVFPVGLIHFQFNVGKTN VVAFAALRSQNPGVITIANAVFAANPPINPDVLVKAFQ" mobile_element complement(36362777..36364468) /note="source:CACAO_M_S_E119191_F3_scaffold_9 1 1688" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(36368858..36370288) /note="source:CACAO_M_E36185_F9_scaffold_5 1 1442" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 36371255..36372755 /note="source:scaffold_8_CACTA_0859 16502 17937" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(36372897..36373118) /note="source:INTACT85_F9_scaffold_4-int 14762 14990" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 36378787..36380473 /locus_tag="TCM_026070" /note="dbxref CacaoGD:Thecc1EG026070" mRNA join(36378787..36379302,36379452..36380473) /locus_tag="TCM_026070" /product="F-box family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026335t1" /note="quality class is medium-utrpoor, express is medium, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.33 coverage" CDS join(36379026..36379302,36379452..36379657) /locus_tag="TCM_026070" /note="paralog of Thecc1EG026335t1" /codon_start=1 /product="F-box family protein, putative" /protein_id="EOY10771.1" /translation="MKALSNLRHSFSMSSTEPPTKFMLLPLNRDTKQLPLLDFINAPD IKIMQSCNGLLLCTSDYDHRSYFICNPVIKKFKMVSFPRPPMLEYQLVDFWSVSKIKF TSEVAIQFNHAVFFNDAIHWDSAAKESLCFDVEIECSKHSLVFESATTSTLLNNSTGL " gene complement(36380524..36386728) /locus_tag="TCM_026071" /note="dbxref CacaoGD:Thecc1EG026071" mRNA complement(join(36380524..36381229,36381444..36381524, 36384792..36385303,36385483..36385688,36385779..36385827, 36386396..36386477,36386612..36386728)) /locus_tag="TCM_026071" /product="Germin-like protein subfamily 1 member 18" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000098001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026068t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s04330.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.40 coverage" gene 36381067..36384226 /locus_tag="TCM_026072" /note="dbxref CacaoGD:Thecc1EG026072" mRNA join(36381067..36381693,36383124..36383175, 36384008..36384226) /locus_tag="TCM_026072" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS complement(join(36381188..36381229,36381444..36381524, 36384792..36385303,36385483..36385688,36385779..36385827, 36386396..36386477,36386612..36386629)) /locus_tag="TCM_026071" /note="paralog of Thecc1EG026068t1" /codon_start=1 /product="Germin-like protein subfamily 1 member 18" /protein_id="EOY10772.1" /db_xref="Phytozome:POPTR_0019s04330.1" /db_xref="TAIR:AT5G39110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SFF9" /translation="MLAAGQECNVWTYTLLSLTVQAPSSYFLILTVQGRLNSMRINGE EYLQTWHALKPDFSSLTEQYNLEQYNQETCLTTMKGVQILVAFVLLALVSSLASASDP SPLQDFCVAINDAKNGVFVNGKFCKDPKLANADDFFFSGLNKQGNTSNQLGSKVTPVN VEQIPGLNTLGISFARVDYAPYGGLNPPHTHPRATEILVVVEGTLYVGFVTSNPDNRL ITKVLYPGDVFVFPVGLIHFQFNKGNTNAVAFAGLSSQNPGVITIANAVFGSNPAINP EVLAKAFQLEKNIERMKQMSQCCDEATREDGDVCTTEAIKMLESDLQSGVICC" CDS join(36381596..36381693,36383124..36383175, 36384008..36384064) /locus_tag="TCM_026072" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10773.1" /translation="MDSWSCGLASRLMDSWSCGLSSSWSGTSKSGSWLQEVSNSLSFE FGLANQISTCIHVWGLDLLDESFG" mobile_element 36383152..36383260 /note="source:INTACT733_F316_scaffold_2-int 362 471" /mobile_element_type="retrotransposon:LTR/Copia" gene 36386562..36388564 /locus_tag="TCM_026073" /note="dbxref CacaoGD:Thecc1EG026073" mRNA join(36386562..36386653,36386868..36387007, 36387109..36387796,36388426..36388564) /locus_tag="TCM_026073" /product="RmlC-like cupins superfamily protein" /inference="alignment:exonerate-protein:2:frave:gene20194" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026076t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s04870.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.40 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc77t9_G2" CDS join(36386884..36387007,36387109..36387662) /locus_tag="TCM_026073" /note="paralog of Thecc1EG026076t1" /codon_start=1 /product="RmlC-like cupins superfamily protein" /protein_id="EOY10774.1" /db_xref="Phytozome:POPTR_0013s04870.1" /db_xref="TAIR:AT5G39110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SFF9" /translation="MKGAHLLLAYSLLVLSSSFAYASDPSPLQDYCVAINDAKDGVFV NGKFCKDPKLAKAEDFFFSGLNIPRNKSNPVGSTVTPVNVAQIPGLNTLGISLVRIDY APNDGLNPPHTHPRATEILVVLEGTLYVGFVTSNPDNRLITKILYPGDVFVFPIGLIH FQFNVGKTNAVAFAALSSQNPGVITIANAVFGANPPINPDVLVKAFQLDKNVVKNLQS KFWWANN" mobile_element complement(36388793..36388960) /note="source:CACAO_on_E565_scaffold_5 923 1106" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 36394535..36394601 /note="source:CACAO_M_E34142_F67_scaffold_4 249 320" /mobile_element_type="retrotransposon:LTR/Copia" gene 36397149..36398236 /locus_tag="TCM_026075" /note="dbxref CacaoGD:Thecc1EG026075" mRNA join(36397149..36397327,36397511..36398236) /locus_tag="TCM_026075" /product="RmlC-like cupins superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000097001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026076t1" /inference="similar to AA sequence:Phytozome:GSVIVT01000103001" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14834t1" CDS join(36397201..36397327,36397511..36398058) /locus_tag="TCM_026075" /note="paralog of Thecc1EG026076t1" /codon_start=1 /product="RmlC-like cupins superfamily protein" /protein_id="EOY10775.1" /db_xref="Phytozome:GSVIVT01000103001" /db_xref="TAIR:AT5G39110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SFF9" /translation="MKGMRCFLVAFTLLAFANSLASAFDPSPLQDFCVAINDTKNGVF VNGKFCKDPKLAVADDFFYSGLNMPGNTSNPVGSNVTTVNVDQIPGLNTLGISLVRID YAPYGGLNPPHTHPRGTEILVVVEGTLYVGFVTSNPENRLFTKVLYPGDVFVFPIGLI HFQFNIGKTEAVAFAGLSSQNAGVITIANAVFGSDPPINPDVLTKAFQLDKNMVAYLQ SRFWSD" gene 36398233..36425560 /locus_tag="TCM_026076" /note="dbxref CacaoGD:Thecc1EG026076" mRNA join(36398233..36398287,36410657..36411017, 36411436..36411716,36414072..36414184,36414720..36414810, 36419166..36419256,36421103..36421168,36421351..36421862, 36424687..36424840,36424983..36425560) /locus_tag="TCM_026076" /product="Germin-like protein subfamily 1 member 18" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021699001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026086t1" /inference="similar to AA sequence:Phytozome:GSVIVT01000098001" /note="quality class is medium, express is weak, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.31 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10030t1" mobile_element 36402813..36402898 /note="source:scaffold_8_CACTA_0858 6101 6185" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(36402887..36405915) /note="source:CACAO_M_E24389_F60_scaffold_4 1 3028" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(36408007..36410969) /note="source:CACAO_M_E69760_F9_scaffold_9 6704 9652" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(36410852..36411017,36411436..36411716, 36414072..36414184,36414720..36414810,36419166..36419256, 36421103..36421168,36421351..36421862,36424687..36424840, 36424983..36425536) /locus_tag="TCM_026076" /note="paralog of Thecc1EG026086t1" /codon_start=1 /product="Germin-like protein subfamily 1 member 18" /protein_id="EOY10776.1" /db_xref="Phytozome:GSVIVT01000098001" /db_xref="TAIR:AT5G39110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SFF9" /translation="MRKLMLSLAGFRSAFGVMSAYRDIAAVVTGSMGVPGCDTSPFQD FYVAINDPKHGKILVIMEGTLYVGLVTSNPENHPITKVLNPGDGFLFPVGLIHFQFNV GKTNAVAFAALSSQNPDVITIVNAVFGSNPAINPDVLVKDFQLDINMISPRLLTPFTA FDSSLLFESSPELTWVDSSSRVIIFFRVILSMCLEFLKVSQGLRLELQEVYPTIFSQI IVCRYNKIFEITNRTLILLHERCLAVAAAASAFDPSPLQDFCVAINDTKNGVFVNGKF CKDPKLAVADDFFYSGLNMPGNTSNPVGSNVTTVNVDQIPGLNTLGISLVRIDYAPYG GLNPPHTHPRGTEILVVVEGTLYVGFVTSNPENRLFTKVLNPGDVFVFPIGLIHFQFN IGKTAAVAFAGLSSQNAGVITIAKAVFGSNPPIKPDVLTKAFQLDKNVDRFPASGILM KGVQLFVVASAFLAFAWSLASASDPSPLQDFCVAINDTKDGVFVNGKFCKDPKLAKAE DFFYSGLNIPRNTSNPVGSTVTPVNVAQILGLNTLGISLARIDYAPYGGLNPPHTHPR ATEILVVLEGTLYVGFVTSNPENRLITKVLYPGDVFVFPVGLIHFQLNIGKTNAVAFA GLSSQNPGVITIANAVFGSKPPINPDVLTKAFQLDKNIVTSLQSRFWWDNN" gene complement(36412615..36416198) /locus_tag="TCM_026078" /note="dbxref CacaoGD:Thecc1EG026078" mRNA complement(join(36412615..36412975,36413628..36414007, 36415635..36416198)) /locus_tag="TCM_026078" /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS complement(join(36412854..36412975,36413628..36414007, 36415635..36416065)) /locus_tag="TCM_026078" /codon_start=1 /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /protein_id="EOY10777.1" /db_xref="TAIR:AT4G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BK37" /translation="MKMNKDEGIQDYTDKLLKLVNQLRQLGEEVSDKRIVNKILVSIL ERFEAKIFSLEDLKDLTKIFVNEIINALLAQEQRIALRDENFVESALVARTKGLKVKG NSSKKNDGKGSKAEEGNKGKATNKYLSCPSCKKRNHIAKYYCKWKATVDAEMSMIIKN GTWTLVDKPVEKNVIGVKWIYRTKLNSDGSINKYKAKPVVKGYAQVYEADYMETYAPI ARHNTIRMLVALVAREEWKLFHLDVKLAFLNGYLTEDIYVDQLEGYEQWNSKGYSDSD WAGSLDDSNSTGRFCFSFGSAVFAWNSKKQHVVA" mobile_element 36417721..36418294 /note="source:INTACT399_F75_scaffold_3-int 1 544" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(36426326..36431920) /note="source:INTACT1604F_F75_scaffold_10-int 1 5568" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 36431927..36432966 /note="source:CACAO_M_E34142_F67_scaffold_4 1 1081" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(36432971..36436269) /note="source:INTACT42_F19_scaffold_5-int 1 3220" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 36436073..36443005 /locus_tag="TCM_026082" /note="dbxref CacaoGD:Thecc1EG026082" mRNA join(36436073..36436148,36441116..36441795, 36441970..36443005) /locus_tag="TCM_026082" /product="RmlC-like cupins superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s04870.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026092t1" /inference="similar to AA sequence:ricco:28830.m000227" /note="quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.23 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc77t8" mobile_element 36436270..36440150 /note="source:CACAO_M_S_E51971_F67_scaffold_4 1067 4984" /mobile_element_type="retrotransposon:LTR/Copia" CDS join(36441672..36441795,36441970..36442523) /locus_tag="TCM_026082" /note="dbxref ricco:28830.m000227; paralog of Thecc1EG026092t1" /codon_start=1 /product="RmlC-like cupins superfamily protein" /protein_id="EOY10778.1" /db_xref="TAIR:AT3G05950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SFF9" /translation="MKGVYFLASFLFLALASSFASASDPSPLQDFCVALNDTKNAVFV NGKFCKDPMLAKAEDFFFSGLNVPGNTSNQLGSKVTPVNVEQIPGLNTLGVSLARVDF APYGGLNPPHTHPRATEILVVLEGTLYVGFVTSNPDNRLITKVLYPGDVFVFPVGLIH FQLNIGKTNAVAFAAFGSQNPGVITIAKAVFGSNPPINPDVLTKAFQLDKNVVKYLQS QFWWDNN" gene 36443053..36450882 /locus_tag="TCM_026084" /note="dbxref CacaoGD:Thecc1EG026084" mRNA join(36443053..36443466,36444470..36444748, 36444839..36444929,36445319..36445470,36450214..36450882) /locus_tag="TCM_026084" /product="RmlC-like cupins superfamily protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026076t1" /inference="similar to AA sequence:Phytozome:GSVIVT01000098001" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.24 coverage" CDS join(36444478..36444748,36444839..36444929, 36445319..36445470,36450214..36450641) /locus_tag="TCM_026084" /note="paralog of Thecc1EG026076t1" /codon_start=1 /product="RmlC-like cupins superfamily protein" /protein_id="EOY10779.1" /db_xref="Phytozome:GSVIVT01000098001" /db_xref="TAIR:AT5G39160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SFF9" /translation="MPGNTSNRVGSNVITVNVDKMPGLNTLGVSLVQIDYAPYGGLNP PHTHPRATEILVVMEGTLYVGFVTSNPENRLISKVLNPGDGFVFPVANAVFGSNPATN PDVLVKAFQLDINVVKHLHRHSNLVFQDRVSNEIAKILSLFQWSGEDITRGLVPVEIR NLPMKTSNTGRVFVNGKFCNNTKLAVADDFFSSSLNMPRNTLNPVGSKVTIVNVDQIP GLNIFGISLVRIDYALYGGLNPPHTHPRGIKILVVMEGTLYVGFVTSNPENRFVTKVL NPGDVFVFPIGLIHFQFNKGKLRLSPLLFSTAKMLGL" mobile_element complement(36448148..36448218) /note="source:CACAO_Again_on_E5_scaffold_1 5984 6056" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(36448220..36449310) /note="source:CACAO_hAT_E1198_scaffold_3 4485 5575" /mobile_element_type="transposon:TIR/hAT" mobile_element 36448857..36449796 /note="source:CACAO_Again_on_E81_scaffold_3 299 1209" /mobile_element_type="transposon:TIR/hAT" mobile_element 36450707..36453750 /note="source:INTACT115_F39_scaffold_4-int 1 3052" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 36453751..36463930 /note="source:CACAO_M_S_E66670_F14_scaffold_5 1 10180" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 36454203..36478357 /locus_tag="TCM_026086" /note="dbxref CacaoGD:Thecc1EG026086" mRNA join(36454203..36454228,36473945..36474456, 36474587..36475118,36477229..36477446,36477621..36478357) /locus_tag="TCM_026086" /product="Germin-like protein subfamily 1 member 18" /inference="alignment:exonerate- protein:2:frave:gene01644.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026076t1" /inference="similar to AA sequence:Phytozome:GSVIVT01000098001" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.44 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g09940t00001" mobile_element 36463931..36465439 /note="source:INTACT115_F39_scaffold_4-int 3048 4564" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 36465408..36465610 /note="source:INTACT115_F39_scaffold_4-int 4471 4674" /mobile_element_type="retrotransposon:LTR/Copia" gene 36469141..36471768 /locus_tag="TCM_026089" /note="dbxref CacaoGD:Thecc1EG026089" mRNA join(36469141..36469216,36469735..36469825, 36471471..36471768) /locus_tag="TCM_026089" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.16 coverage" CDS join(36469208..36469216,36469735..36469825, 36471471..36471691) /locus_tag="TCM_026089" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10781.1" /translation="MKTIHFQFNIGKTKVVAFAGLSNQNARVMTRKNCRLWLTPTNQS GCSHKGLPVGQECGYLSSVPVLVRLKTNLRAKSKPRSLLLVLNNVAINFLHESHIVLL TVIQ" mobile_element 36469815..36470143 /note="source:scaffold_10_CACTA_0130 6252 6574" /mobile_element_type="transposon:TIR/CACTA" mobile_element 36470160..36471464 /note="source:scaffold_10_CACTA_0130 8380 9608" /mobile_element_type="transposon:TIR/CACTA" gene 36474279..36524416 /locus_tag="TCM_026091" /note="dbxref CacaoGD:Thecc1EG026091" mRNA join(36474279..36474456,36496508..36497143, 36524288..36524416) /locus_tag="TCM_026091" /product="RmlC-like cupins superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400031725.3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400031725.5" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026097t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s04870.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10037t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14810t1" CDS join(36474330..36474456,36496508..36497061) /locus_tag="TCM_026091" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG026097t1" /codon_start=1 /product="RmlC-like cupins superfamily protein isoform 2" /protein_id="EOY10783.1" /db_xref="Phytozome:POPTR_0013s04870.1" /db_xref="TAIR:AT5G39110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SFF9" /translation="MKGVELFLVASAFLAFAWSLASASDPDPLQDFCVAINDTKDGVF VNGKFCKDPKLAKAEDFFYSGLNIPRNTSNPVGSTVTQVNVAQILGLNTLGISLARID YAPYGGLNPPHTHPRASEILVVLEGTLYVGFVTSNPENRLITKVLYPGDVFVFPVGLI HFQLNIGKTNAVAFAGLSSQNPGVITIAKAVFGSNPPINPDVLTKAFQLDKNIVTSLQ SRFWWDNN" CDS join(36474330..36474456,36474587..36475118, 36477229..36477446,36477621..36478174) /locus_tag="TCM_026086" /note="paralog of Thecc1EG026076t1" /codon_start=1 /product="Germin-like protein subfamily 1 member 18" /protein_id="EOY10780.1" /db_xref="Phytozome:GSVIVT01000098001" /db_xref="TAIR:AT3G05950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SFF9" /translation="MKGVELFLVASAFLAFAWSLASASDPDPLQDFCVAINDTKDGVF VNGKFCQDPKLAKAEDFFYSGLNIPRNTSNPVGSTVTQVNVAQILGLNTLGISLARID YAPYGGLNPPHTHPRASEILVVLEGTLYVGFVTSNPENRLITKVLYPGDVFVFPVGLI HFQLNIGKTNAVAFAGLSSQNPGVITIAKAVFGSNPPINPDVLTKAFQLDKNIVTSLQ SRLQPINRHAFKRFTHPKQENLEDLNLVTCQATMKGVYFLASFLFLALASSFASASDP SPLQDFCVALNDTKNAVFVNGKFCKDPMLAKAEDFFFSGLNVPGNTSNQLGSKVTPVN VEQIPGLNTLGVSLARVDFAPYGGLNPPHTHPRATEILVVLEGTLYVGFVTSNPDNRL ITKVLYPGDVFVFPVGLIHFQLNIGKTNAVAFAAFGSQNPGVITIAKAVFGSNPPINP DVLTKAFQLDKNVVKYLQSQFWWDNN" mobile_element 36481052..36483662 /note="source:CACAO_on_SS_E42_scaffold_2 19409 22010" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(36483663..36490403) /note="source:INTACT897F_F376_scaffold_6-int 120 6923" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 36488678..36491397 /note="source:CACAO_on_SS_E42_scaffold_2 19410 22116" /mobile_element_type="transposon:TIR/Mutator" mobile_element 36491522..36491854 /note="source:scaffold_10_CACTA_0130 6249 6574" /mobile_element_type="transposon:TIR/CACTA" mobile_element 36491871..36493316 /note="source:scaffold_10_CACTA_0130 8380 9608" /mobile_element_type="transposon:TIR/CACTA" mRNA join(36496177..36496377,36496508..36497171) /locus_tag="TCM_026091" /product="RmlC-like cupins superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400031725.5" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026097t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s04870.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14810t1" CDS join(36496251..36496377,36496508..36497061) /locus_tag="TCM_026091" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG026097t1" /codon_start=1 /product="RmlC-like cupins superfamily protein isoform 1" /protein_id="EOY10782.1" /db_xref="Phytozome:POPTR_0013s04870.1" /db_xref="TAIR:AT3G05950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SFF9" /translation="MKGVQLFLVASAFLAFAWSLASASDPDPLQDFCVAINDTKDGVF VNGKFCKDPKLAKAEDFFYSGLNIPRNTSNPVGSTVTQVNVAQILGLNTLGISLARID YAPYGGLNPPHTHPRASEILVVLEGTLYVGFVTSNPENRLITKVLYPGDVFVFPVGLI HFQLNIGKTNAVAFAGLSSQNPGVITIAKAVFGSNPPINPDVLTKAFQLDKNIVTSLQ SRFWWDNN" gene 36499184..36500352 /locus_tag="TCM_026092" /note="dbxref CacaoGD:Thecc1EG026092" mRNA join(36499184..36499363,36499538..36500352) /locus_tag="TCM_026092" /product="RmlC-like cupins superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s06030.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026082t1" /inference="similar to AA sequence:ricco:28830.m000227" /note="quality class is strong, express is medium, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.43 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc12042t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1286t6_C2" CDS join(36499240..36499363,36499538..36500091) /locus_tag="TCM_026092" /note="dbxref ricco:28830.m000227; paralog of Thecc1EG026082t1" /codon_start=1 /product="RmlC-like cupins superfamily protein" /protein_id="EOY10784.1" /db_xref="TAIR:AT3G05950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SFF9" /translation="MKGVYFLASFLFLALASSFASASDPSPLQDFCVALNDTKNAVFV NGKFCKDPMLAKAEDFFFSGLNVPGNTSNQLGSKVTPVNVEQIPGLNTLGVSLARVDF APYGGLNPPHTHPRATEILVVLEGTLYVGFVTSNPDNRLITKVLYPGDVFVFPVGLIH FQLNIGKTNAVAFAAFGSQNPGVITIAKAVFGSNPPINPDVLTKAFQLDKNVVKYLQS QFWWDNN" mobile_element 36509589..36510010 /note="source:scaffold_2_CACTA_0273 229 653" /mobile_element_type="transposon:TIR/CACTA" mobile_element 36511597..36512809 /note="source:CACAO_Again_on_E5_scaffold_1 4483 5697" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(36511880..36514003) /note="source:scaffold_3_CACTA_0393 20 2050" /mobile_element_type="transposon:TIR/CACTA" mobile_element 36513593..36514050 /note="source:scaffold_5_CACTA_0618 3318 3748" /mobile_element_type="transposon:TIR/CACTA" mobile_element 36515856..36516157 /note="source:CACAO_M_E35674_F13_scaffold_5 3110 3417" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(36516642..36516964) /note="source:INTACT745_F320_scaffold_4-int 1782 2102" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 36516923..36517500 /note="source:INTACT39F_F22_scaffold_1-int 5309 5869" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(36517056..36518877) /note="source:CACAO_M_E48452_F5_scaffold_6 7175 8971" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 36519844..36520792 /locus_tag="TCM_026096" /note="dbxref CacaoGD:Thecc1EG026096" mRNA join(36519844..36519859,36520042..36520792) /locus_tag="TCM_026096" /product="RmlC-like cupins superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000067001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026075t1" /inference="similar to AA sequence:Phytozome:GSVIVT01000097001" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc49t1" CDS 36520090..36520590 /locus_tag="TCM_026096" /note="paralog of Thecc1EG026075t1" /codon_start=1 /product="RmlC-like cupins superfamily protein" /protein_id="EOY10785.1" /db_xref="Phytozome:GSVIVT01000097001" /db_xref="TAIR:AT5G39150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SFF9" /translation="MTSSIQASTCQETHQIQLDQMSLLSMLTKYQDFNTLGISLVRID YAPYGGLNPPHTHPRGTEILVVVEGTLYVGFVTSNLENRLFTKVLNPGDVFVFPIGLI HFQFNIGKTKAVAFAGLSSQNAVVITIAKAVFGSNPPINPDVLTKAFQLDKTVVSYLQ SRFWSD" gene 36523344..36524570 /locus_tag="TCM_026097" /note="dbxref CacaoGD:Thecc1EG026097" mRNA join(36523344..36523540,36523671..36524570) /locus_tag="TCM_026097" /product="RmlC-like cupins superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000071001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026091t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s04870.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10049t2" CDS join(36523414..36523540,36523671..36524224) /locus_tag="TCM_026097" /note="paralog of Thecc1EG026091t1" /codon_start=1 /product="RmlC-like cupins superfamily protein" /protein_id="EOY10786.1" /db_xref="Phytozome:POPTR_0013s04870.1" /db_xref="TAIR:AT3G05950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SFF9" /translation="MKGVQLFLVASAFLAFAWSLASASDPSPLQDFCVAINDTKDGVF VNGKFCQDPKLAKAEDFFYSGLNIPRNTSNPLGSTVTQVNVAQILGLNTLGISLARID YAPYGGLNPPHTHPRASEILVVLEGTLYVGFVTSNPENRLITKVLYPGDVFVFPVGLI HFQLNIGKTNAVAFAGLSSQNPGVITIAKAVFGSNPPINPDVLTKAFQLDKNIVTSLQ SRFWWDNN" gene 36525184..36526359 /locus_tag="TCM_026098" /note="dbxref CacaoGD:Thecc1EG026098" mRNA 36525184..36526359 /locus_tag="TCM_026098" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.38 coverage" CDS 36525747..36526244 /locus_tag="TCM_026098" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10787.1" /translation="MSCRSFHGVFSGCVIHKTTFLESDSMIIPVEFAHEEAENKIIAS LTARISARLASPQPAFFKKVILTAPLLSRKTPPIPRWPGHPLAAPSVLNLSQPAGGHS QETMLLTFLFEVGAEAKKGVVAISKMALSPGHWDLTYHATLNLTISNTFNKSHIFPSK IISFL" gene 36526628..36527061 /locus_tag="TCM_026099" /note="dbxref CacaoGD:Thecc1EG026099" mRNA 36526628..36527061 /locus_tag="TCM_026099" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400023143" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc8258t1" CDS 36526673..36526948 /locus_tag="TCM_026099" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10788.1" /translation="MLLDKFVFGLKVKMDIPQKAHELFPSLCLPIKDTSTKLNMPLPL SIIPRPELMHFASFVNSKGKDTWKGHFKDKALDPFIFPEVDINTILN" mobile_element 36530263..36533009 /note="source:CACAO_on_SS_E42_scaffold_2 19413 22118" /mobile_element_type="transposon:TIR/Mutator" mobile_element 36535580..36540154 /note="source:CACAO_M_E44231_F43_scaffold_5 1 4575" /mobile_element_type="retrotransposon:LTR/Copia" gene 36535834..36540111 /locus_tag="TCM_026102" /note="dbxref CacaoGD:Thecc1EG026102" mRNA join(36535834..36536277,36539936..36540111) /locus_tag="TCM_026102" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG019111t1" /inference="similar to AA sequence:Phytozome:POPTR_0200s00210.1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.93 coverage" CDS join(36535965..36536277,36539936..36540030) /locus_tag="TCM_026102" /note="paralog of Thecc1EG019111t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10789.1" /db_xref="Phytozome:POPTR_0200s00210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NFR2" /translation="MSSTSASHISPPIFDGKNYQVWAVKMETFLRAYDLWTAIETEEE PAALRDNATINQIKQHSEKVAKRYRALSFIQAAVSEKIFSRIMSCKTAKKTWTKLEED YLVCFIVLMVSINVVFELSFDVLVCMYTNTDTC" gene complement(36540116..36541014) /locus_tag="TCM_026104" /note="dbxref CacaoGD:Thecc1EG026104" mRNA complement(36540116..36541014) /locus_tag="TCM_026104" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400029162" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026103t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400023901" /note="quality class is strong-expresste, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc8324t1" CDS complement(36540144..36540584) /locus_tag="TCM_026104" /note="paralog of Thecc1EG026103t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10790.1" /db_xref="Phytozome:PGSC0003DMP400023901" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MXT9" /translation="MQVLNLMREFEVLKMKEDEVMKDYVDKLMKIVNQVRLLGAELSD ARIVEKVLVSIPERFESKILALEESKDLTAMSLQELVNALQALEQRRAIRSEVSSDMR SDSALVARHKGGAGSGTKKTEVEKKERDKKSGDGKRQKAKFLLM" mobile_element complement(36540240..36541038) /note="source:INTACT433_F212_scaffold_1-int 415 1168" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 36540993..36541097 /note="source:INTACT237_F179_scaffold_7-int 4546 4650" /mobile_element_type="retrotransposon:LTR/Copia" gene 36543803..36544957 /locus_tag="TCM_026105" /note="dbxref CacaoGD:Thecc1EG026105" mRNA join(36543803..36543990,36544144..36544957) /locus_tag="TCM_026105" /product="RmlC-like cupins superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031080001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026075t1" /inference="similar to AA sequence:Phytozome:GSVIVT01000103001" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS join(36543864..36543990,36544144..36544682) /locus_tag="TCM_026105" /note="paralog of Thecc1EG026075t1" /codon_start=1 /product="RmlC-like cupins superfamily protein" /protein_id="EOY10791.1" /db_xref="Phytozome:GSVIVT01000103001" /db_xref="TAIR:AT5G39110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SFF9" /translation="MKGVQNFLVVFALLTLAFSLASASDPSSLQDFCVALNDTKHAIF VNGKFCKDPKLATADDFFFSGLDKAGNTSNAVGSRVTPVNVDQIPGLNTLGISLARID YAPYGGLNPPHTHPRATEILAVKKGTLYVGFVTSNPDNKFFTKILKTGDVFVFPVGLI HFQFNIGKTNAIAFAGLSSQNPGVITIANAVFGSNPPINPDVLAKAFKLDKKVVEFLQ TQF" gene 36546064..36550258 /locus_tag="TCM_026106" /note="dbxref CacaoGD:Thecc1EG026106" mRNA join(36546064..36546070,36547001..36548527, 36549391..36549781,36549883..36550258) /locus_tag="TCM_026106" /product="Pentatricopeptide repeat (PPR) superfamily protein" /inference="alignment:exonerate- protein:2:TAIR:AT5G18390.1" /inference="similar to AA sequence:ricco:29680.m001750" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc817t7" CDS 36547078..36548445 /locus_tag="TCM_026106" /note="dbxref ricco:29680.m001750" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein" /protein_id="EOY10792.1" /db_xref="TAIR:AT5G18390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94JX6" /translation="MLHSVKLLLRYGKQSQNILCSLTTLTSANSLQIASVSTTAVSKD DYFAAIHHISNTVRREVHPERTLNRMNISVNSELVFRVLRSCSNSPTESLRFFSWARA HYVPTSVEFEELVKILIRHRKYESMWKTIQQMQKQNLSLSCDTLSFIIEEYGKNGLVD QAVEVFNKSTSLGCKQTVSVYNSLLFALCEVKMFHGAYALIRRMIRKGEVPDKRTYAI LVNGWCSGGKMREAQEFLEEMSKMGFNPPVRGRDLLVEGLLNAGYLESAKEMVRRMTK EGFVPDIGTFNSLVETICSSGEVDFCINMYHSVCKLGLCPDINTYKILIPAASKVGRI DEAFRLLNNSVEDGYRPFPSLYAPIIKAMCRKGQFDDAFSFFGEMKVKGHSPNRPVYT MLITMCGRGGRFVEAANYLVEMTELGLAPISRCFDMVIDGLKNCGKHDLAKRIEQLEV SLRGV" gene complement(36549463..36558682) /locus_tag="TCM_026107" /note="dbxref CacaoGD:Thecc1EG026107" mRNA complement(join(36549463..36550411,36551090..36551164, 36551265..36551385,36551534..36551680,36551770..36551875, 36551962..36552044,36552126..36552253,36552336..36552422, 36552499..36552609,36552855..36553022,36553148..36553349, 36553436..36553512,36553649..36553720,36554118..36554214, 36554439..36554641,36554754..36554856,36554952..36555019, 36555110..36555163,36555272..36555381,36555819..36555897, 36556002..36556064,36556301..36556420,36556913..36556969, 36557143..36557259,36557373..36557423,36557533..36557631, 36557715..36557860,36558324..36558631,36558646..36558682)) /locus_tag="TCM_026107" /product="Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g36330.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020181t1" /inference="similar to AA sequence:Phytozome:Glyma20g36330.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10258t1" CDS complement(join(36550361..36550411,36551090..36551164, 36551265..36551385,36551534..36551680,36551770..36551875, 36551962..36552044,36552126..36552253,36552336..36552422, 36552499..36552609,36552855..36553022,36553148..36553349, 36553436..36553512,36553649..36553720,36554118..36554214, 36554439..36554641,36554754..36554856,36554952..36555019, 36555110..36555163,36555272..36555381,36555819..36555897, 36556002..36556064,36556301..36556420,36556913..36556969, 36557143..36557259,36557373..36557423,36557533..36557631, 36557715..36557860,36558324..36558519)) /locus_tag="TCM_026107" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG020181t1" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1" /protein_id="EOY10793.1" /db_xref="Phytozome:Glyma20g36330.1" /db_xref="TAIR:AT3G04240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5S5" /translation="MLSLQNGVGISRAAPYGFGVIDRADETTASAAAAAAAGKASAYA VKPEPASSFGIVPHKGHDSHEVDEDMHLALAHQMYKSGNYKQALDHSNSVYEQNPLRT DNLLLLGAIYYQLHDYDMCIAKNEEALRIEPRFAECYGNMANAWKEKGDIDVAIRYYM IAIELRPNFADAWSNLASAYMRKGRFNEAAQCCRQALQLNPLLVDAHSNLGNLMKAQG LVQEAYSCYLEALRIQPTFAIAWSNLAGLFMDSGDLNRALQYYKEAVKLKPTFPDAYL NLGNIYKALGMPQEAIVCYQRAVQTRPNNPIALGNLASMYYERGQLDMAILNYKQAIA CDQRFLEAYNNLGNALKDVGRVDEAIQCYNQCLTLQPNHPQALTNLGNIYMEWNMVAA AASYYKATLVVTTGLSAPFNNLAVIYKQQGNYAEAISCYNEVLRIDPLAADGLVNRGN TYKEIGRVSEAIQDYIRAINIRPNMAEAHANLASAYKDSGHAEAAVKSYKQALLLRPD FPEATCNLLHTLQCVCSWEDRDKLFAEVESIIRRQINMSVLPSVQPFHAIAYPIDPML ALDISRKYAAHCSLIASRFALPPFNHPAPIPIKSNGGNERLKVGYVSSDFGNHPLSHL MGSVFGMHNRENVEVFCYALSQNDGTEWRQRVQSEAEHFIDVSAMSSDVIAKLINKDG IQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGANYIDYLVTDEFVSPLRYSH IYSEKLVHLPHCYFVNDYKQKNRDVLEPACPHKRSDYGLPEDKFIFACFNQLYKMDPE IFNTWCNILKRVPNSALWLLRFPAAGEMRLRAYAVAQGLQPEQIIFTDVAMKHEHIRR SALADLFLDTPLCNAHTTGTDILWAGLPMVTLPLEKMATRVAGSLCLATGFGEEMIVS SMKEYEERAVSLALNRPKLQALTNKLKAARLTCPLFDTARWVRNLERSYFKMWNLYCS GQQPQHFKAYNVLDKSRKQSSGQI" mRNA complement(join(36550816..36551164,36551265..36551385, 36551534..36551680,36551770..36551875,36551962..36552044, 36552126..36552253,36552336..36552422,36552499..36552609, 36552855..36553022,36553148..36553349,36553436..36553512, 36553649..36553720,36554118..36554214,36554439..36554641, 36554754..36554856,36554952..36555019,36555110..36555163, 36555272..36555381,36555819..36555897,36556002..36556064, 36556301..36556922)) /locus_tag="TCM_026107" /product="Tetratricopeptide repeat (TPR)-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g36330.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020181t1" /inference="similar to AA sequence:Phytozome:Glyma20g36330.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02868t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10258t1" CDS complement(join(36551051..36551164,36551265..36551385, 36551534..36551680,36551770..36551875,36551962..36552044, 36552126..36552253,36552336..36552422,36552499..36552609, 36552855..36553022,36553148..36553349,36553436..36553512, 36553649..36553720,36554118..36554214,36554439..36554641, 36554754..36554856,36554952..36555019,36555110..36555163, 36555272..36555381,36555819..36555897,36556002..36556064, 36556301..36556342)) /locus_tag="TCM_026107" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG020181t1" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein isoform 2" /protein_id="EOY10794.1" /db_xref="Phytozome:Glyma20g36330.1" /db_xref="TAIR:AT3G04240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5S5" /translation="MDSGDLNRALQYYKEAVKLKPTFPDAYLNLGNIYKALGMPQEAI VCYQRAVQTRPNNPIALGNLASMYYERGQLDMAILNYKQAIACDQRFLEAYNNLGNAL KDVGRVDEAIQCYNQCLTLQPNHPQALTNLGNIYMEWNMVAAAASYYKATLVVTTGLS APFNNLAVIYKQQGNYAEAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVSEAIQDYI RAINIRPNMAEAHANLASAYKDSGHAEAAVKSYKQALLLRPDFPEATCNLLHTLQCVC SWEDRDKLFAEVESIIRRQINMSVLPSVQPFHAIAYPIDPMLALDISRKYAAHCSLIA SRFALPPFNHPAPIPIKSNGGNERLKVGYVSSDFGNHPLSHLMGSVFGMHNRENVEVF CYALSQNDGTEWRQRVQSEAEHFIDVSAMSSDVIAKLINKDGIQILINLNGYTKGARN EIFAMQPAPIQVSYMGFPGTTGANYIDYLVTDEFVSPLRYSHIYSEKLVHLPHCYFVN DYKQKNRDVLEPACPHKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILKRVPNSA LWLLRFPAAGEMRLRAYAVAQGLQPEQIIFTDVAMKHEHIRRSALADLFLDTPLCNAH TTGTDILWAGLPMVTLPLEKMATRVAGSLCLATGFGEEMIVSSMKEYEERAVSLALNR PKLQALTNKLKAARLTCPLFDTARWVRNLERSYFKMWNLYCSGQQPQHFKVTENDYDF PYDR" gene complement(36559894..36565959) /locus_tag="TCM_026108" /note="dbxref CacaoGD:Thecc1EG026108" mRNA complement(join(36559894..36560104,36560703..36561289, 36561414..36561801,36562171..36565241,36565382..36565959)) /locus_tag="TCM_026108" /product="Leucine-rich repeat protein kinase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s04220.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020422t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s04220.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1345t1" CDS complement(join(36561440..36561801,36562171..36565177)) /locus_tag="TCM_026108" /note="paralog of Thecc1EG020422t1" /codon_start=1 /product="Leucine-rich repeat protein kinase family protein" /protein_id="EOY10795.1" /db_xref="Phytozome:POPTR_0019s04220.1" /db_xref="TAIR:AT5G63930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SHI2" /translation="MFLGFGLSPFSLNISILHVNAPLDMERSLSCRLFTVFILIHVLL VHQSIGLNSEGQYLLDIKSKLVDKFNYLGNWNPNDPTPCGWEGVNCTTIDYYNPVVQS LNLSSMNLSGFLSPSIGGLVQLTSLDLSSNGLSRNIPEEIGNCSSLEVLNLNNNKFEA HIPKELGSLSSLTTLNIFNNRLSGPLPDEIGNLSSLTQLVAYSNNFSGSLPSSLGNLK RLKSFRAGENLLTGSLPSEIGSCESLQYLGLAQNALTGEIPKEIGMLKNLKELILWDN QLSGSIPQELGNCTNLSILALYDNKLFGMVPKELGNLMNLKWLYLYRNQLNGTIPREI GNLSFAEEIDFSENMLTGEIPVEFSKIKGLRLLYLFENQITGLIPVELTTLKNLTRLD LSINSLSGPIPMGFQYLTELIMLQLFDNSLSGSIPQKLGVSSSLWVVDLSDNQLEGRI PPHLCRNSNLIFLNLGSNKLTGNIPSGVTNCKKLVQLLLVGNSLTGSFPSSLCKLVNL SAVELGQNKFSGPIPSEIGNCKTLQRLHLSYNYFTSKLPREIGNLSQLVTFNVSSNSL TGTIPPETFNCKMLQRLDLSRNRFTGSLPGEVGTLSQLELLKLSDNNLSGTITPALGN LIRLTELQMGGNSFSGNIPAELGALSSLQIALNLSYNNLSGVIPPELGNLVLLENLLL NNNHLTGEIPGSFGNLSSLLGSNFSYNDLTGPIPSLPRLQNMSISSFFENKGLCGGPL CGCNPPQSSFSLLPDTKNKGTRLGKVVAIVAAAVGGVSLILIVVIIYFMRRPVEIVAP LQEKPSAARVSDIYFSPKEGFTFQDLLAATDNFDERFVVGRGACGTVYKAVLPRGHVI AVKKLASNREGNNNVDNSFRAEILTLGNIRHRNIVKLYGFCYHQGSNLLLYEYMSRGS LGELLHGASCNLDWRTRFLIALGAAQGLAYLHHDCKPRIFHRDIKSNNILLDDKFEAH VGDFGLAKVIDMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGR TPVQPLDQGGDLVTWVRNYIRDHSLSPAILDARLNQQDESTISHMIIVLKIALICTSM SPFERPTMREVVLMLIESNRRESHFDTSPSHDTD" gene complement(36568839..36593651) /locus_tag="TCM_026109" /note="dbxref CacaoGD:Thecc1EG026109" mRNA complement(join(36568839..36569632,36570073..36570279, 36571151..36571323,36571792..36571999,36572657..36572784, 36573694..36573781,36574096..36574239,36574425..36574574, 36574669..36574812,36574891..36575010,36575780..36575882, 36575968..36576044,36576175..36576345,36585756..36585832, 36586883..36587051,36587628..36587871,36588357..36588568, 36588916..36589131,36589247..36589360,36589728..36589886, 36590017..36590212,36590447..36590529,36590637..36590706, 36591546..36591638,36591858..36591928,36592019..36592138, 36592334..36592411,36592560..36592624,36592908..36592980, 36593287..36593651)) /locus_tag="TCM_026109" /product="Transcription activators isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s04800.1" /inference="similar to AA sequence:Phytozome:GSVIVT01026355001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc629t9" mRNA complement(join(36569099..36569632,36570073..36570279, 36571151..36571323,36571792..36571999,36572657..36572784, 36573694..36573781,36574096..36574239,36574425..36574574, 36574669..36574812,36574891..36575010,36575780..36575882, 36575968..36576044,36576175..36576345,36585756..36585832, 36586883..36587051,36587724..36587871,36588357..36588568, 36588916..36589131,36589247..36589333,36589728..36589760, 36590017..36590212,36590465..36590529,36590637..36590706, 36591546..36591638,36591858..36591928,36592019..36592138, 36592334..36592411,36592560..36592624,36592908..36592980, 36593287..36593622)) /locus_tag="TCM_026109" /product="Transcription activators isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s04800.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s04800.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc634t10; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc629t9; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc644t9" CDS complement(join(36569438..36569632,36570073..36570279, 36571151..36571323,36571792..36571999,36572657..36572784, 36573694..36573781,36574096..36574239,36574425..36574574, 36574669..36574812,36574891..36575010,36575780..36575882, 36575968..36576044,36576175..36576345,36585756..36585832, 36586883..36587051,36587724..36587871,36588357..36588568, 36588916..36589131,36589247..36589333,36589728..36589760, 36590017..36590212,36590465..36590529,36590637..36590706, 36591546..36591638,36591858..36591928,36592019..36592138, 36592334..36592411,36592560..36592624,36592908..36592980, 36593287..36593343)) /locus_tag="TCM_026109" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Transcription activators isoform 2" /protein_id="EOY10797.1" /db_xref="Phytozome:POPTR_0013s04800.1" /db_xref="TAIR:AT5G18410.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5S2C3" /translation="MAAVPVEEAIAALSTFSLEDEQPEVQGPAVLVSTERGATNSPIE YSDVSAYRLSLSEDTKALNQLNTLILEGKEMASVLYTYRSCVKALPQLPDSMKHSQAD LYLETYQVLDLEMSRLREIQRWQASAASKLAADMQRFSRPERCINGPTITHLWSMLKL LDVLVQLDHLKNAKASIPNDFSWYKRTFTQVSVQWPDTDSMREELDDLQIFLSSRWAI LLNLHVEMFRVNNVEDILQVLIVFAVESLELDFALLFPERHMLLRVLPVLVVMATSSE KDSESLYKRVKINRLISIFKELPPREAQEYPRHYLIVNHIGAIRAEHDDFAIRFASSI NQLLLLKSTDGADVEWCKEVKGNMYDMVVEGFQLLSRWTARVWEQCAWKFSRPCKDAG PSESQELLASYSDYEKVVRYNYSAEERKALVEVVSYIKSVGSMMQRSDTLVADALWET IHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMANSSKPESEYQSLQHG GDESRGNFFYPRPVAPTATQVHCLQFLIYEVVSGGNLRKPGGLFGNSGSEIPVNDLKQ LETFFYKLSFFLHILDYSATIATLTDLGFLWFREFYLESSRVIQFPIECSLPWMLVDH VLESQSAGLLESVLMPFDIYNDSAQHALVYLKQRFLYDEIEAEVDHCFDIFVAKLCEA IFTYYKSWSASELLDPSFLFALDNGEKYSIQPMRFTSLLKMTRVKFLGRTIDLRSLIA ERMNKVFRENLEFLFDRFESQDLCAIVELEKLLDILKHSHELLSKDLSIDSFSLMLNE MQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFIRSSKVPLAPVQKPSVPHA KPNFYCGTQDLNSAHQSYARLHSGFFGIPHMISVVKLLGSRSLPWLIRALLDHISNKI AALEPMITGLQEALPKSIGLLPFDGGVTGCMRLVKEQLSWGTKSELKAEVLCGIKEIG SVLYWMGLLDIVLRELDTTHFMQTAPWLGLLPGADGQTLQSQNGGDSPVVNLFKSATA TIVSNPRCPNPTSFYTMSKQAEAADLLYKANLNTGSVLEYALAFTSAALDKYCSKWSA APKTGFIDITTSKDFYRIYSGLQIGYLEQSIQLQPNNHDMLGDSVAWGGCTIIYLLGQ QLHFELFDFSYQILNVAEVEAVSITQTHRSPHFGQGWDTLLEAMKKARRLNNHVFSML KARCPLEDKTACAIKQSGAPLHRIKFENTVSAFETLPQKGT" CDS complement(join(36569438..36569632,36570073..36570279, 36571151..36571323,36571792..36571999,36572657..36572784, 36573694..36573781,36574096..36574239,36574425..36574574, 36574669..36574812,36574891..36575010,36575780..36575882, 36575968..36576044,36576175..36576345,36585756..36585832, 36586883..36587051,36587628..36587871,36588357..36588568, 36588916..36589131,36589247..36589360,36589728..36589886, 36590017..36590212,36590447..36590529,36590637..36590706, 36591546..36591638,36591858..36591928,36592019..36592138, 36592334..36592411,36592560..36592624,36592908..36592980, 36593287..36593343)) /locus_tag="TCM_026109" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Transcription activators isoform 1" /protein_id="EOY10796.1" /db_xref="Phytozome:GSVIVT01026355001" /db_xref="TAIR:AT5G18410.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5S2C3" /translation="MAAVPVEEAIAALSTFSLEDEQPEVQGPAVLVSTERGATNSPIE YSDVSAYRLSLSEDTKALNQLNTLILEGKEMASVLYTYRSCVKALPQLPDSMKHSQAD LYLETYQVLDLEMSRLREIQRWQASAASKLAADMQRFSRPERCINGPTITHLWSMLKL LDVLVQLDHLKNAKASIPNDFSWYKRTFTQVSVQWPDTDSMREELDDLQIFLSSRWAI LLNLHVEMFRVNKYPVSYVVEDILQVLIVFAVESLELDFALLFPERHMLLRVLPVLVV MATSSEKDSESLYKRVKINRLISIFKNDPVIPAFPDLHLSPAAILKELSMYFQKFSSQ TRLLTLPSPHELPPREAQEYPYNLDIITYQRHYLIVNHIGAIRAEHDDFAIRFASSIN QLLLLKSTDGADVEWCKEVKGNMYDMVVEGFQLLSRWTARVWEQCAWKFSRPCKDAGP SESQELLASYSDYEKVVRYNYSAEERKALVEVVSYIKSVGSMMQRSDTLVADALWETI HAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMANSSKPESEYQSLQHGG DESRGNFFYPRPVAPTATQVSPLYKLFHACRDFLLCEFSASDCLKAFILLSVHCLQFL IYEVVSGGNLRKPGGLFGNSGSEIPVNDLKQLETFFYKLSFFLHILDYSATIATLTDL GFLWFREFYLESSRVIQFPIECSLPWMLVDHVLESQSAGLLESVLMPFDIYNDSAQHA LVYLKQRFLYDEIEAEVDHCFDIFVAKLCEAIFTYYKSWSASELLDPSFLFALDNGEK YSIQPMRFTSLLKMTRVKFLGRTIDLRSLIAERMNKVFRENLEFLFDRFESQDLCAIV ELEKLLDILKHSHELLSKDLSIDSFSLMLNEMQENISLVSFSSRLASQIWSEMQSDFL PNFILCNTTQRFIRSSKVPLAPVQKPSVPHAKPNFYCGTQDLNSAHQSYARLHSGFFG IPHMISVVKLLGSRSLPWLIRALLDHISNKIAALEPMITGLQEALPKSIGLLPFDGGV TGCMRLVKEQLSWGTKSELKAEVLCGIKEIGSVLYWMGLLDIVLRELDTTHFMQTAPW LGLLPGADGQTLQSQNGGDSPVVNLFKSATATIVSNPRCPNPTSFYTMSKQAEAADLL YKANLNTGSVLEYALAFTSAALDKYCSKWSAAPKTGFIDITTSKDFYRIYSGLQIGYL EQSIQLQPNNHDMLGDSVAWGGCTIIYLLGQQLHFELFDFSYQILNVAEVEAVSITQT HRSPHFGQGWDTLLEAMKKARRLNNHVFSMLKARCPLEDKTACAIKQSGAPLHRIKFE NTVSAFETLPQKGT" mobile_element complement(36577027..36577069) /note="source:CACAO_M_E49885_F60_scaffold_7 1680 1748" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(36577070..36577952) /note="source:CACAO_M_S_E15657_F60_scaffold_2 483 1357" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(36577950..36578912) /note="source:CACAO_M_S_E15657_F60_scaffold_2 6645 7608" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(36578943..36585600) /note="source:CACAO_M_S_E15657_F60_scaffold_2 3 6695" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 36589655..36596213 /note="source:scaffold_5_CACTA_0617 1 6559" /mobile_element_type="transposon:TIR/CACTA" gene complement(36594204..36601959) /locus_tag="TCM_026112" /note="dbxref CacaoGD:Thecc1EG026112" mRNA complement(join(36594204..36594924,36595239..36595372, 36595735..36595938,36596165..36596548,36596670..36597132, 36597639..36597807,36597905..36598062,36599449..36599526, 36599886..36599958,36600071..36600131,36600535..36600752, 36600852..36601023,36601311..36601959)) /locus_tag="TCM_026112" /product="Plastid transcriptionally active 3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01026351001" /inference="similar to AA sequence:Phytozome:GSVIVT01026351001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10096t2" mRNA complement(join(36594348..36594924,36595239..36595372, 36595735..36595938,36596165..36596548,36596670..36597132, 36597639..36597807,36597905..36598062,36599449..36599526, 36599886..36599958,36600071..36600131,36600535..36600752, 36600852..36601023,36601306..36601801)) /locus_tag="TCM_026112" /product="Plastid transcriptionally active 3 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01026351001" /inference="similar to AA sequence:Phytozome:GSVIVT01026351001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc133t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10096t2" CDS complement(join(36594693..36594924,36595239..36595372, 36595735..36595938,36596165..36596548,36596670..36597132, 36597639..36597807,36597905..36598062,36599449..36599526, 36599886..36599958,36600071..36600131,36600535..36600752, 36600852..36601023,36601311..36601682)) /locus_tag="TCM_026112" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Plastid transcriptionally active 3 isoform 1" /protein_id="EOY10798.1" /db_xref="Phytozome:GSVIVT01026351001" /db_xref="TAIR:AT3G04260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPF5" /translation="MSLFLSHTVLPSTPPLSRHRNAVVYAAVSAPKRKPSPRRKKRQS QQKKDDDNATLSSSNAAVSALEKSLRLTFMEELMQKARSRDVAGVSDVIYDMIAAGLT PGPRSFHGLVVAHVLNGDVEGAMQALRRELGVGVRPLHETLVSMIRLFGSKGLATKGL EVLAAMEKLNYDIRQAWIILVEELVRNKYMEDANNVFLKGAKGGLRATNELYDLMIEE DCKVGDHSNALEIAYEMEAAGRMATTFHFNCLLSVQATCGIPEIAFATFENMEYGEEY MKPDTETYNWVIQAYTRAESYDRVQDVAELLGMMVEDHKRVQPNVKTYALLVECFTKY CVVKEAIRHFRALKKFEGGTRVLQNEGNFDDPLSLYLRALCREGRIVELLEALQAMAK DNQPIPPRAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYIEEGGLTGERKRWVP RRGKTPLDPDAAGFIYSNPMETSFKQRCLEDWKLHHRKLLKTLQNEGLAALGGASESD YVRVSERLKKIIKGPDQNVLKPKAASKMIVSELKEELEAQGLPIDGTRNVLYQRVQKA RRINRSRGRPLWVPPVEEEEEEVDEEVDELISRIKLEEGNTEFWKRRFLGEHLNVDHV KPIDEGESEPADDELDDGDVVEDAAKDIEDDEADEEEEGEQAESQEGDRIKDKEVEAK KPLQMIGVQLLKDSDQTTTRSKKSRRRSSRVSVEDDDDDDWFPEDIFEAFQELRERKV FDVEDMYTIADAWGWTWEKELKNKPPRKWSQEWEVELAIQVMQKVIELGGTPTVGDCA MILRAAIKAPMPSAFLKILQTAHSLGFVFGSPLYDEVISICVDLGELDAAIAIVADLE TAGIAVPDQTLDRVISARQTVDTAGGDVSSSSSSSTTSSSSSSTTSSSS" CDS complement(join(36594693..36594924,36595239..36595372, 36595735..36595938,36596165..36596548,36596670..36597132, 36597639..36597807,36597905..36598062,36599449..36599526, 36599886..36599958,36600071..36600131,36600535..36600752, 36600852..36601023,36601306..36601308)) /locus_tag="TCM_026112" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Plastid transcriptionally active 3 isoform 2" /protein_id="EOY10799.1" /db_xref="Phytozome:GSVIVT01026351001" /db_xref="TAIR:AT3G04260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPF5" /translation="MMQALRRELGVGVRPLHETLVSMIRLFGSKGLATKGLEVLAAME KLNYDIRQAWIILVEELVRNKYMEDANNVFLKGAKGGLRATNELYDLMIEEDCKVGDH SNALEIAYEMEAAGRMATTFHFNCLLSVQATCGIPEIAFATFENMEYGEEYMKPDTET YNWVIQAYTRAESYDRVQDVAELLGMMVEDHKRVQPNVKTYALLVECFTKYCVVKEAI RHFRALKKFEGGTRVLQNEGNFDDPLSLYLRALCREGRIVELLEALQAMAKDNQPIPP RAMILSRKYRTLVSSWIEPLQEEAELGYEIDYIARYIEEGGLTGERKRWVPRRGKTPL DPDAAGFIYSNPMETSFKQRCLEDWKLHHRKLLKTLQNEGLAALGGASESDYVRVSER LKKIIKGPDQNVLKPKAASKMIVSELKEELEAQGLPIDGTRNVLYQRVQKARRINRSR GRPLWVPPVEEEEEEVDEEVDELISRIKLEEGNTEFWKRRFLGEHLNVDHVKPIDEGE SEPADDELDDGDVVEDAAKDIEDDEADEEEEGEQAESQEGDRIKDKEVEAKKPLQMIG VQLLKDSDQTTTRSKKSRRRSSRVSVEDDDDDDWFPEDIFEAFQELRERKVFDVEDMY TIADAWGWTWEKELKNKPPRKWSQEWEVELAIQVMQKVIELGGTPTVGDCAMILRAAI KAPMPSAFLKILQTAHSLGFVFGSPLYDEVISICVDLGELDAAIAIVADLETAGIAVP DQTLDRVISARQTVDTAGGDVSSSSSSSTTSSSSSSTTSSSS" mobile_element complement(36602977..36604550) /note="source:CACAO_M_E12058_F3_scaffold_2 3451 4999" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 36604542..36605369 /note="source:CACAO_M_S_E4413_F3_scaffold_1 15318 16133" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(36605297..36605391) /note="source:CACAO_M_E12058_F3_scaffold_2 2254 2349" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(36605448..36607451) /note="source:CACAO_M_E42395_F3_scaffold_5 368 2376" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(36608286..36609299) /locus_tag="TCM_026114" /note="dbxref CacaoGD:Thecc1EG026114" mRNA complement(join(36608286..36608698,36608875..36609164, 36609260..36609299)) /locus_tag="TCM_026114" /product="Response regulator 22, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s04170.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009607t1" /inference="similar to AA sequence:Phytozome:GSVIVT01026349001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaB_g15970t00001" CDS complement(join(36608522..36608698,36608875..36609144)) /locus_tag="TCM_026114" /note="paralog of Thecc1EG009607t1" /codon_start=1 /product="Response regulator 22, putative" /protein_id="EOY10800.1" /db_xref="Phytozome:GSVIVT01026349001" /db_xref="TAIR:AT3G04280.3" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TDT2" /translation="MVLGKGASSSLSRKMVDGAEDMVSNCNDFTVLVVDDDPVIRKLH DMHLKKFGLSAQVVENGKRAVDLCHFGATFNLILMDKEMPIMDGVEATKELRAMGVNS LIVGVTSRDSQYETQAFMEAGLDFCFEKPLTADKISFILQELNKKN" gene 36609832..36612430 /locus_tag="TCM_026115" /note="dbxref CacaoGD:Thecc1EG026115" mRNA join(36609832..36610480,36611554..36611606, 36611950..36611997,36612117..36612403) /locus_tag="TCM_026115" /product="Uncharacterized protein isoform 1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is none, intron is strong, protein is utrpoor_complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00420t00002" mRNA join(<36610211..36610480,36611554..36611606, 36612117..36612430) /locus_tag="TCM_026115" /product="Uncharacterized protein isoform 2" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is none, intron is strong, protein is partial5; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10086t2; inference alignment:Newbler:10:TSA:cgbaP1_g00420t00002" CDS <36610212..36610478 /locus_tag="TCM_026115" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY10802.1" /translation="FFLVSLVIFILICNFVFFLFSTFRFHYCMNLSIFVFFISFFFLA FKFLTFVIHFVTFRFRPLTQRLYYILARRNQVVHGETSMTGFVC" CDS 36610296..36610478 /locus_tag="TCM_026115" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY10801.1" /translation="MNLSIFVFFISFFFLAFKFLTFVIHFVTFRFRPLTQRLYYILAR RNQVVHGETSMTGFVC" mobile_element 36611329..36611473 /note="source:scaffold_5_CACTA_0608 5505 5659" /mobile_element_type="transposon:TIR/CACTA" gene complement(36612505..36615179) /locus_tag="TCM_026116" /note="dbxref CacaoGD:Thecc1EG026116" mRNA complement(join(36612505..36613231,36613346..36613598, 36613992..36614234,36614402..36614532,36614645..36615179)) /locus_tag="TCM_026116" /product="GDSL-like Lipase/Acylhydrolase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s04150.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026119t2" /inference="similar to AA sequence:Phytozome:POPTR_0019s04150.1" /note="quality class is strong-expresste, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g07849t00001" CDS complement(join(36612999..36613231,36613346..36613598, 36613992..36614234,36614402..36614532,36614645..36614897)) /locus_tag="TCM_026116" /note="paralog of Thecc1EG026119t2" /codon_start=1 /product="GDSL-like Lipase/Acylhydrolase superfamily protein" /protein_id="EOY10803.1" /db_xref="Phytozome:POPTR_0019s04150.1" /db_xref="TAIR:AT5G18430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GR99" /translation="MLMASSSTFFGLSMVLVFLLALESIAPLAEARAFFVFGDSLVDS GNNNYLATTARADAPPYGIDYPSRRPTGRFSNGLNIPDLIGEQIGLSESPLPYLSPEF NGQKMLVGANFASAGVGILNDTGVQFVNIIRMSGQLEYFKEYKRRLTALVGSKQAHQL VSQALVLITVGGNDFVNNYYLVPYSARSRQYKLPDYVKFLISEYRRLLMRLYKLGARR VLVTGTGPMGCVPAELAMRGTNGGCSEELQRAASLYNPQLAQMLNGLNKNIGRDVFVS ANTQKMHNDFVSDPRAFGFTTSQIACCGQGPYNGLGLCTRLSNLCPNRALYAFWDPFH PSEKANRLIVQQIMTGSTEYMNPMNLTTIMALDSRI" gene complement(36615661..36621293) /locus_tag="TCM_026117" /note="dbxref CacaoGD:Thecc1EG026117" mRNA complement(join(36615661..36616469,36617337..36617512, 36617825..36617955,36618047..36618131,36618311..36618406, 36618708..36618818,36621195..36621293)) /locus_tag="TCM_026117" /product="GDSL-like Lipase/Acylhydrolase superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:29680.m001742" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026119t2" /inference="similar to AA sequence:Phytozome:POPTR_0013s04790.3" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.10 coverage" CDS complement(join(36616220..36616469,36617337..36617512, 36617825..36617955,36618047..36618131,36618311..36618406, 36618708..36618797)) /locus_tag="TCM_026117" /note="paralog of Thecc1EG026119t2" /codon_start=1 /product="GDSL-like Lipase/Acylhydrolase superfamily protein, putative" /protein_id="EOY10804.1" /db_xref="Phytozome:POPTR_0013s04790.3" /db_xref="TAIR:AT5G18430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GR99" /translation="MLDGGTGNFHLQKQSQKGDRKEKKKKILSAKPQSYLRASIYSSL HPRKSLPIEAKSLRACQRILPPYGVDYPTGRRTGRFSNGLIIPDLISQQIGLSEPPLP SLSPELRGQKLFNGANFASAGVVILNDTGIQFASIIRMFRRFDYFEQYQHRLSALIGA EQTRRLVNQALVLITVGGNDFVNNYYLIPYSARIYYITDSMLWARTLQWDRSMHNVLQ FVSKQRDLCILVSIPSLREGKQVDYATHHDRLYQVHASNEPQHHYSLRFHVLIDTFP" gene complement(36617903..36632547) /locus_tag="TCM_026118" /note="dbxref CacaoGD:Thecc1EG026118" mRNA complement(join(36617903..36617985,36622559..36623258, 36623817..36624069,36624176..36624418,36624563..36624690, 36624786..36625143,36632511..36632547)) /locus_tag="TCM_026118" /product="GDSL-like Lipase/Acylhydrolase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01026341001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026119t2" /inference="similar to AA sequence:ricco:29680.m001738" /note="quality class is strong-expresste, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03417t00001" mobile_element complement(36622632..36622642) /note="source:scaffold_3_CACTA_0384 814 838" /mobile_element_type="transposon:TIR/CACTA" mobile_element 36622643..36622699 /note="source:CACAO_Again_on_E64_scaffold_2 663 723" /mobile_element_type="transposon:TIR/hAT" mobile_element 36622656..36622743 /note="source:scaffold_6_CACTA_0712 1391 1479" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(36622674..36622804) /note="source:CACAO_M_E52694_F25_scaffold_8 3957 4076" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(36622700..36622723) /note="source:scaffold_3_CACTA_0384 752 813" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(36622744..36622783) /note="source:CACAO_M_S_E52027_F3_scaffold_5 3854 3946" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(36623020..36623258,36623817..36624069, 36624176..36624418,36624563..36624690,36624786..36625026)) /locus_tag="TCM_026118" /note="dbxref ricco:29680.m001738; paralog of Thecc1EG026119t2" /codon_start=1 /product="GDSL-like Lipase/Acylhydrolase superfamily protein" /protein_id="EOY10805.1" /db_xref="TAIR:AT5G33370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GR99" /translation="MASLVVVASWIVLGLVMATSTTKVEAARAFFVFGDSLVDNGNNN YLATTARADSPPYGIDTPSRRPTGRFSNGKNIPDFISDALGSEPVLPYLSPELRGDKL LVGANFASAGIGILNDTGIQFINIIRMFRQLLYFQEYQSRLADLVGYNEAQRIVSDSL VLITVGGNDFVNNYYLVPFSARSRQFSLPDYVRYLISEYRKLLRKLYDLGARRVLVTG TGPLGCVPAELAMRSLSGQCAPDLQRAAALYNPQLVQMINGLNSEIGAKVFIAANTQQ QTNDFISNPRAYGFATSKVACCGQGPFNGLGLCTLLSNLCPNRNQYVFWDPFHPSERA NRIIVDTILRGSTDHVSPMNLSTLLALDYKTRT" mobile_element 36626612..36627420 /note="source:CACAO_MITE_S145_scaffold_5 1 809" /mobile_element_type="transposon:TIR/MITE" mobile_element 36630443..36630900 /note="source:CACAO_on_S_E390_scaffold_9 2391 2850" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(36630865..36631055) /note="source:INTACT51_F23_scaffold_9-int 5257 5440" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(36630970..36631258) /note="source:scaffold_1_CACTA_0009 2228 2511" /mobile_element_type="transposon:TIR/CACTA" gene complement(36632600..36637339) /locus_tag="TCM_026119" /note="dbxref CacaoGD:Thecc1EG026119" mRNA complement(join(36632600..36633476,36634145..36634397, 36634886..36635128,36635220..36635347,36635448..36635714, 36637180..36637339)) /locus_tag="TCM_026119" /product="Li-tolerant lipase 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29680.m001738.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026116t1" /inference="similar to AA sequence:ricco:29680.m001738" /note="transcript variant 1; alternatively spliced; quality class is strong-expresste, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09223t00001" mRNA complement(join(36632677..36633476,36634145..36634397, 36634886..36635128,36635220..36635347,36635448..36636044)) /locus_tag="TCM_026119" /product="Li-tolerant lipase 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29680.m001738.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026116t1" /inference="similar to AA sequence:ricco:29680.m001738" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc57t3; alternateUTRof:Thecc1EG026119t1; inference alignment:Newbler:10:TSA:cgbaB_g09223t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc54t9" CDS complement(join(36633244..36633476,36634145..36634397, 36634886..36635128,36635220..36635347,36635448..36635694)) /locus_tag="TCM_026119" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29680.m001738; paralog of Thecc1EG026116t1" /codon_start=1 /product="Li-tolerant lipase 1 isoform 1" /protein_id="EOY10806.1" /db_xref="TAIR:AT3G04290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GR99" /translation="MDNSSIFISWMILGLLLTLGNVAPQAEAARAFFVFGDSLVDNGN NNYLATTARADAYPYGIDYPTHRATGRFSNGLNIPDLISEQIGSEPTLPYLSPELTGQ KLLVGANFASAGIGILNDTGFQFVNIIRISKQLEYFQQYQQRVSALIGPEQTQRLVNQ ALILMTLGGNDFVNNYYLVPFSARSRQFSLPDYVVYIISEYRKILVRLHGLGARRVLV TGTGPLGCVPAELAQHSRAGECAVELQRAAALFNPQLVQMLNGLNRELGSDIFIAANA YDMHMDWISNPQAYGFVTSKVACCGQGPYNGIGLCTMASNLCPNRDIYAFWDPFHPSE RANRLIVRQIATGSTKYMNPMNLSTIMELDSRV" CDS complement(join(36633244..36633476,36634145..36634397, 36634886..36635128,36635220..36635347,36635448..36635694)) /locus_tag="TCM_026119" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29680.m001738; paralog of Thecc1EG026116t1" /codon_start=1 /product="Li-tolerant lipase 1 isoform 1" /protein_id="EOY10807.1" /db_xref="TAIR:AT3G04290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GR99" /translation="MDNSSIFISWMILGLLLTLGNVAPQAEAARAFFVFGDSLVDNGN NNYLATTARADAYPYGIDYPTHRATGRFSNGLNIPDLISEQIGSEPTLPYLSPELTGQ KLLVGANFASAGIGILNDTGFQFVNIIRISKQLEYFQQYQQRVSALIGPEQTQRLVNQ ALILMTLGGNDFVNNYYLVPFSARSRQFSLPDYVVYIISEYRKILVRLHGLGARRVLV TGTGPLGCVPAELAQHSRAGECAVELQRAAALFNPQLVQMLNGLNRELGSDIFIAANA YDMHMDWISNPQAYGFVTSKVACCGQGPYNGIGLCTMASNLCPNRDIYAFWDPFHPSE RANRLIVRQIATGSTKYMNPMNLSTIMELDSRV" mobile_element complement(36637939..36638007) /note="source:scaffold_6_CACTA_0717 5654 5715" /mobile_element_type="transposon:TIR/CACTA" mobile_element 36639725..36640008 /note="source:CACAO_Mariner_E38_scaffold_2 1319 1613" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(36640656..36640818) /note="source:CACAO_MITE_S163_scaffold_6 6 173" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(36640674..36640841) /note="source:CACAO_on_E137_scaffold_4 6 156" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 36641796..36643988 /locus_tag="TCM_026120" /note="dbxref CacaoGD:Thecc1EG026120" mRNA join(36641796..36641905,36642120..36642459, 36642831..36642905,36643359..36643424,36643553..36643988) /locus_tag="TCM_026120" /product="Photosystem I subunit E-2-like protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g04780.1" /inference="similar to AA sequence:Phytozome:POPTR_0002s25510.2" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10106t2" CDS join(36642160..36642459,36642831..36642905, 36643359..36643424,36643553..36643657) /locus_tag="TCM_026120" /codon_start=1 /product="Photosystem I subunit E-2-like protein" /protein_id="EOY10808.1" /db_xref="Phytozome:POPTR_0002s25510.2" /db_xref="TAIR:AT2G20260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9S714" /translation="MATCNIACAASGFVLKSSLAPKPSSTPRNTVAFSSKHGNNISRR LVVRAAEEGPPPPPPPPPTPPEASTTTTTTAPAEGEAKPAPKAAKPPPIGPKRGAKVS NPFTFLPIQEICLYIPEPGTWSQVKILRRESYWYNTVGSVVTVDQDPKTRYPVVVRFN KVNYANVSTNNYALDEIQEVD" gene complement(36644183..36645457) /locus_tag="TCM_026121" /note="dbxref CacaoGD:Thecc1EG026121" mRNA complement(36644183..36645457) /locus_tag="TCM_026121" /product="Integrase-type DNA-binding superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma02g42960.1" /inference="similar to AA sequence:ricco:29680.m001737" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.36 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc4543t9" CDS complement(36644354..36644995) /locus_tag="TCM_026121" /note="dbxref ricco:29680.m001737" /codon_start=1 /product="Integrase-type DNA-binding superfamily protein, putative" /protein_id="EOY10809.1" /db_xref="TAIR:AT1G75490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S7Q0" /translation="MEAEAKANCTKKVVISKRPSSLGKSRKGCKRGKGGPENAMCTYR GVRQRTWGKWVAEIREPNRGNRLWIGTFSTSLDAVLAYDEVARKLYGPSAKLNLPQPR DFPSITSFPGNLVNSCKETGMLGSPAVGESSGSSGSSIQSEERLVRRKISTEGFKGSV FLGNDGEEDFYWPEFSLENDFLKMNDIEVLMGQEFKGNWNGNEIAGIQSQWFF" gene 36646444..36670203 /locus_tag="TCM_026122" /note="dbxref CacaoGD:Thecc1EG026122" mRNA join(36646444..36646834,36648021..36648397, 36648493..36648624,36648767..36649148,36649305..36649451, 36649568..36649752,36649860..36649986,36650110..36650183, 36650269..36650345,36650441..36650477,36650596..36650762, 36651018..36651201,36651296..36651373,36651508..36651627, 36651711..36651770,36652779..36652865,36652967..36653066, 36653157..36653326,36654453..36654749,36654834..36654950, 36655061..36655162,36655248..36655397,36655494..36655658, 36655731..36655907,36656740..36656862,36657020..36657100, 36657190..36657306,36657487..36657659,36657934..36658011, 36658115..36658262,36659080..36659202,36659307..36659363, 36659443..36659553,36659631..36659822,36659900..36660073, 36660667..36660777,36660873..36660942,36661072..36661150, 36661385..36661487,36661636..36661806,36661926..36662048, 36662126..36662239,36663072..36663178,36663266..36663317, 36663402..36663508,36663605..36663664,36663767..36663881, 36664024..36664134,36664218..36664355,36664430..36664552, 36664659..36664730,36665306..36665418,36666670..36666828, 36667060..36667156,36667236..36667418,36667694..36667888, 36667962..36668141,36668246..36668378,36668523..36668601, 36668777..36669406,36669907..36670203) /locus_tag="TCM_026122" /product="ILITYHIA isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01026340001" /inference="similar to AA sequence:Phytozome:GSVIVT01026340001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc203t3" mRNA join(36646444..36646834,36648165..36648397, 36648493..36648624,36648767..36649148,36649305..36649451, 36649568..36649752,36649860..36649986,36650110..36650183, 36650269..36650345,36650441..36650477,36650596..36650762, 36651018..36651201,36651296..36651373,36651508..36651627, 36651711..36651770,36652779..36652865,36652967..36653066, 36653157..36653326,36654453..36654749,36654834..36654950, 36655061..36655162,36655248..36655397,36655494..36655658, 36655731..36655907,36656740..36656862,36657020..36657100, 36657190..36657306,36657487..36657659,36657934..36658011, 36658115..36658262,36659080..36659202,36659307..36659363, 36659443..36659553,36659631..36659822,36659900..36660073, 36660667..36660777,36660873..36660942,36661072..36661150, 36661385..36661487,36661636..36661806,36661926..36662048, 36662126..36662239,36663072..36663178,36663266..36663317, 36663402..36663508,36663605..36663664,36663767..36663881, 36664024..36664134,36664218..36664355,36664430..36664552, 36664659..36664730,36665306..36665418,36666670..36666828, 36667060..36667156,36667236..36667418,36667694..36667888, 36667962..36668141,36668246..36668378,36668523..36668601, 36668777..36669406,36669907..36670203) /locus_tag="TCM_026122" /product="ILITYHIA isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01026340001" /inference="similar to AA sequence:Phytozome:GSVIVT01026340001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:PASA:2:TSA:puevd3b025268t1a3; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc203t3" mRNA join(36646444..36646834,36648179..36648397, 36648493..36648624,36648767..36649148,36649305..36649451, 36649568..36649752,36649860..36649986,36650110..36650183, 36650269..36650345,36650441..36650477,36650596..36650762, 36651018..36651201,36651296..36651373,36651508..36651627, 36651711..36651770,36652779..36652865,36652967..36653066, 36653157..36653326,36654453..36654749,36654834..36654950, 36655061..36655162,36655248..36655397,36655494..36655658, 36655731..36655907,36656740..36656862,36657020..36657100, 36657190..36657306,36657487..36657659,36657934..36658011, 36658115..36658262,36659080..36659202,36659307..36659363, 36659443..36659553,36659631..36659822,36659900..36660073, 36660667..36660777,36660873..36660942,36661072..36661150, 36661385..36661487,36661636..36661806,36661926..36662048, 36662126..36662239,36663072..36663178,36663266..36663317, 36663402..36663508,36663605..36663664,36663767..36663881, 36664024..36664134,36664218..36664355,36664430..36664552, 36664659..36664730,36665306..36665418,36666670..36666828, 36667060..36667156,36667236..36667418,36667694..36667888, 36667962..36668141,36668246..36668378,36668523..36668601, 36668777..36669406,36669907..36670203) /locus_tag="TCM_026122" /product="ILITYHIA isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01026340001" /inference="similar to AA sequence:Phytozome:GSVIVT01026340001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:PASA:2:TSA:puevd3b025268t1a2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc203t3" CDS join(36646711..36646834,36648021..36648397, 36648493..36648624,36648767..36649148,36649305..36649451, 36649568..36649752,36649860..36649986,36650110..36650183, 36650269..36650345,36650441..36650477,36650596..36650762, 36651018..36651201,36651296..36651373,36651508..36651627, 36651711..36651770,36652779..36652865,36652967..36653066, 36653157..36653326,36654453..36654749,36654834..36654950, 36655061..36655162,36655248..36655397,36655494..36655658, 36655731..36655907,36656740..36656862,36657020..36657100, 36657190..36657306,36657487..36657659,36657934..36658011, 36658115..36658262,36659080..36659202,36659307..36659363, 36659443..36659553,36659631..36659822,36659900..36660073, 36660667..36660777,36660873..36660942,36661072..36661150, 36661385..36661487,36661636..36661806,36661926..36662048, 36662126..36662239,36663072..36663178,36663266..36663317, 36663402..36663508,36663605..36663664,36663767..36663881, 36664024..36664134,36664218..36664355,36664430..36664552, 36664659..36664730,36665306..36665418,36666670..36666828, 36667060..36667156,36667236..36667418,36667694..36667888, 36667962..36668141,36668246..36668378,36668523..36668601, 36668777..36668819) /locus_tag="TCM_026122" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="ILITYHIA isoform 1" /protein_id="EOY10810.1" /db_xref="Phytozome:GSVIVT01026340001" /db_xref="TAIR:AT1G64790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I894" /translation="MAGSSSPVESLVSIAGSVSTPSTKERVRIFRDELPPIITNSEMS PEFTSLLVDIIFKTFPIFDDGGSRKAVNGVIVKALGEVIFMKSFAAALVQAMEKQSKF QTHVGCYTLLKWSCLLLSRSQFATVSRNALCRVAAAQASLLHIVMQRSFRERRACIKS FFHLFSQSPDVYNTYIEEIKDARIPYKDAPELLCLLLEFSSVVPSKFEQSKPIFLDIY VKAVLNAREKPTKGLSESFHPLFARMSHEDLQSTVIPSLVKMLKRNPEIVLESVGILL SLVNLDLSKYAMEILSVVLPQARHAEDGRRIGALTVVRCLSQKSSNPDAFESMFNAIK AVLGGSEGRLAFPYQRIGMMNALQELSNAPEGKYLNNLSRTVCGFLLTCYKDEGNEEV KLAILSAIASWAARFVDALQPDLVSFFASGLKEKEALRRGHLRSLLAICKNSDALLQI SSLLGPLLQLVKTGFTKAVQRLDGIYALSIVGKIAAADIKAEETVAKEKIWSLISQNE PSLVAISMASKLSIEDCISCVDLLEVLLVEHSRRVLETFSAKLLLQLLLFLMCHSSWD VRKTTYDATKKIVAAAPQLSEILLVEFSDSLSLVGEKINALKTSDADNSPDTQVPILP SVEVLVKALAVISSTALATTPSASTRVIVCSHHPCIIGTAKRDAVWRRLHKCLRALGF DVIGIISANIANICKGLVGPLGLMSANPLEQNAAIYSLCTLMSIAPEDTYSEFEKHLI NLPDRHSHDMLSENDIQIFRTPEGILSNEQGVYVAESVTSKNTKQQDRINSNHSGKRE TSSRAAGGGGKKDIGKSMKKADKGKTAKEEAREQLLREEASIREKVREIQKNLSLMLN ALGDMAVANPVFAHSQLPSLVKFVDPLLRSPIVGDVAYDTSVKLSRCLVHPLCNWALD IATALRLIVTDEVCLWELIPLVDEEADERPSLGLFERIVNGLSVSCKSGPLPVDSFTF VFPIMEQILLSSKRTGLHDDVLRILYLHLDPLLPLPRLRMLSALYHVLGVVPAYQASI GPALNELCLGLQPEEVASALYGVYAKDVHVRMTCLNAVKCIPAVSGRALPQNVEVATN IWIALHDPEKSIAEAAEDVWDRYGYDFGTDYSGIFKALSHVNYNVRVAAAEALAAAMD EIPDSIQESLSTLFSLYIRDSAFGEENLDAGWLGRQGIALALHSAADVLRTKDLPVVM TFLISRALADPNADVRGRMINAGIMIIDRHGRENVSLLFPIFENYLNKKASDEEKYDL VREGVVIFTGALAKHLAKDDPKVHAVVEKLLDVLNTPSEAVQQAVSTCLSPLMQSKQD DAAALVSRLLDQLMKNDKYGERRGAAFGLAGVVKGFGLSSLKKYGIVAVLREGFADRN SAKSREGALLAFECLCEYLGRLFEPYVIQMLPLLLVSFSDQVIAVREAAECAARAMMS QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPRIVPKLTEV LTDTHPKVQSAGQLALQQVGSVIKNPEISSLVPTLLMGLTDPNDYTKYSLDILLQTTF INSIDAPSLALLVPIVHRGLRERSADTKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPE VKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVPWLFDTLKSDNSNVERSGAAQG LSEVLAALGTEYFEDILPDIIRNCSHQKAAVRDGYLTLFKYFPRSLGVQFQNYLQLVL PAILDGLADENESVRDAALCAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVE LLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRTD VSITVRQAALHVWKTIVANTPKTLKEIMPVLMNTLITSLASASSERRQVAGRALGELV RKLGERVLPLIIPILSQGLKNPDASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIR TALCDSAPEVRESAGLAFSTLYKSAGMQAIDEIVPTLLHALEDDETSDTALDGLKQIL SVRTTAVLPHILPKLVHCPLSAFNAHALGALAEVAGPGLNYHLGTILPALLSAMGGDD VDVQPLAKEAAETVVLVIDEEGIESLISELLRGVGDSEASIRRSSSYLIGYFFKNSKL YLVDETLNMISTLIVLLSDSDSATVVVAWEALSRVVSSVPKEVLPSCIKLVRDAVSTA RDKERRKKKGGPVVIPGFCLPKALQPLLPIFLQGLISGSAELREQAALGLGELIEVTS EQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIMIRKGGIALKPFLPQLQTTFI KCLQDNTRTVRSSAALALGKLSALSTRVDPLVSDLLSSLQASDSGVREAILTALKGVV KHAGKSVSPATRTRVYALLKDLIHHDDDQVRMFASSILGVISQYMDESQLSDLLQELL DLSSSSNWADRHGSVLTFSSLLRHNPSTVFMSPESASILICLKSSLKDEKFPLRETST KALGRLLLCQVQSNPSNSTSLVDILSSVLSAMQDDSSEVRRRALSAIKAAAKANPSVI TTHLSLLGPALAECLKDSSTPVRLAAERCALHTFQLTKGTENVQASQKYITGLDARRI SKFPEHSDDSEESEDDSASS" CDS join(36646711..36646834,36648165..36648397, 36648493..36648624,36648767..36649148,36649305..36649451, 36649568..36649752,36649860..36649986,36650110..36650183, 36650269..36650345,36650441..36650477,36650596..36650762, 36651018..36651201,36651296..36651373,36651508..36651627, 36651711..36651770,36652779..36652865,36652967..36653066, 36653157..36653326,36654453..36654749,36654834..36654950, 36655061..36655162,36655248..36655397,36655494..36655658, 36655731..36655907,36656740..36656862,36657020..36657100, 36657190..36657306,36657487..36657659,36657934..36658011, 36658115..36658262,36659080..36659202,36659307..36659363, 36659443..36659553,36659631..36659822,36659900..36660073, 36660667..36660777,36660873..36660942,36661072..36661150, 36661385..36661487,36661636..36661806,36661926..36662048, 36662126..36662239,36663072..36663178,36663266..36663317, 36663402..36663508,36663605..36663664,36663767..36663881, 36664024..36664134,36664218..36664355,36664430..36664552, 36664659..36664730,36665306..36665418,36666670..36666828, 36667060..36667156,36667236..36667418,36667694..36667888, 36667962..36668141,36668246..36668378,36668523..36668601, 36668777..36668819) /locus_tag="TCM_026122" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="ILITYHIA isoform 2" /protein_id="EOY10811.1" /db_xref="Phytozome:GSVIVT01026340001" /db_xref="TAIR:AT1G64790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I894" /translation="MAGSSSPVESLVSIAGSVSTPSTKERVRIFRDELPPIITNSAAL VQAMEKQSKFQTHVGCYTLLKWSCLLLSRSQFATVSRNALCRVAAAQASLLHIVMQRS FRERRACIKSFFHLFSQSPDVYNTYIEEIKDARIPYKDAPELLCLLLEFSSVVPSKFE QSKPIFLDIYVKAVLNAREKPTKGLSESFHPLFARMSHEDLQSTVIPSLVKMLKRNPE IVLESVGILLSLVNLDLSKYAMEILSVVLPQARHAEDGRRIGALTVVRCLSQKSSNPD AFESMFNAIKAVLGGSEGRLAFPYQRIGMMNALQELSNAPEGKYLNNLSRTVCGFLLT CYKDEGNEEVKLAILSAIASWAARFVDALQPDLVSFFASGLKEKEALRRGHLRSLLAI CKNSDALLQISSLLGPLLQLVKTGFTKAVQRLDGIYALSIVGKIAAADIKAEETVAKE KIWSLISQNEPSLVAISMASKLSIEDCISCVDLLEVLLVEHSRRVLETFSAKLLLQLL LFLMCHSSWDVRKTTYDATKKIVAAAPQLSEILLVEFSDSLSLVGEKINALKTSDADN SPDTQVPILPSVEVLVKALAVISSTALATTPSASTRVIVCSHHPCIIGTAKRDAVWRR LHKCLRALGFDVIGIISANIANICKGLVGPLGLMSANPLEQNAAIYSLCTLMSIAPED TYSEFEKHLINLPDRHSHDMLSENDIQIFRTPEGILSNEQGVYVAESVTSKNTKQQDR INSNHSGKRETSSRAAGGGGKKDIGKSMKKADKGKTAKEEAREQLLREEASIREKVRE IQKNLSLMLNALGDMAVANPVFAHSQLPSLVKFVDPLLRSPIVGDVAYDTSVKLSRCL VHPLCNWALDIATALRLIVTDEVCLWELIPLVDEEADERPSLGLFERIVNGLSVSCKS GPLPVDSFTFVFPIMEQILLSSKRTGLHDDVLRILYLHLDPLLPLPRLRMLSALYHVL GVVPAYQASIGPALNELCLGLQPEEVASALYGVYAKDVHVRMTCLNAVKCIPAVSGRA LPQNVEVATNIWIALHDPEKSIAEAAEDVWDRYGYDFGTDYSGIFKALSHVNYNVRVA AAEALAAAMDEIPDSIQESLSTLFSLYIRDSAFGEENLDAGWLGRQGIALALHSAADV LRTKDLPVVMTFLISRALADPNADVRGRMINAGIMIIDRHGRENVSLLFPIFENYLNK KASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVEKLLDVLNTPSEAVQQAVSTC LSPLMQSKQDDAAALVSRLLDQLMKNDKYGERRGAAFGLAGVVKGFGLSSLKKYGIVA VLREGFADRNSAKSREGALLAFECLCEYLGRLFEPYVIQMLPLLLVSFSDQVIAVREA AECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL PRIVPKLTEVLTDTHPKVQSAGQLALQQVGSVIKNPEISSLVPTLLMGLTDPNDYTKY SLDILLQTTFINSIDAPSLALLVPIVHRGLRERSADTKKKAAQIVGNMCSLVTEPKDM IPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVPWLFDTLKSDNS NVERSGAAQGLSEVLAALGTEYFEDILPDIIRNCSHQKAAVRDGYLTLFKYFPRSLGV QFQNYLQLVLPAILDGLADENESVRDAALCAGHVLVEHYATTSLPLLLPAVEDGIFND NWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEV LAALYMVRTDVSITVRQAALHVWKTIVANTPKTLKEIMPVLMNTLITSLASASSERRQ VAGRALGELVRKLGERVLPLIIPILSQGLKNPDASRRQGVCIGLSEVMASAGKSQLLS FMDELIPTIRTALCDSAPEVRESAGLAFSTLYKSAGMQAIDEIVPTLLHALEDDETSD TALDGLKQILSVRTTAVLPHILPKLVHCPLSAFNAHALGALAEVAGPGLNYHLGTILP ALLSAMGGDDVDVQPLAKEAAETVVLVIDEEGIESLISELLRGVGDSEASIRRSSSYL IGYFFKNSKLYLVDETLNMISTLIVLLSDSDSATVVVAWEALSRVVSSVPKEVLPSCI KLVRDAVSTARDKERRKKKGGPVVIPGFCLPKALQPLLPIFLQGLISGSAELREQAAL GLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQVKSAILSTLSIMIRKGGIALKP FLPQLQTTFIKCLQDNTRTVRSSAALALGKLSALSTRVDPLVSDLLSSLQASDSGVRE AILTALKGVVKHAGKSVSPATRTRVYALLKDLIHHDDDQVRMFASSILGVISQYMDES QLSDLLQELLDLSSSSNWADRHGSVLTFSSLLRHNPSTVFMSPESASILICLKSSLKD EKFPLRETSTKALGRLLLCQVQSNPSNSTSLVDILSSVLSAMQDDSSEVRRRALSAIK AAAKANPSVITTHLSLLGPALAECLKDSSTPVRLAAERCALHTFQLTKGTENVQASQK YITGLDARRISKFPEHSDDSEESEDDSASS" CDS join(36646805..36646834,36648179..36648397, 36648493..36648624,36648767..36649148,36649305..36649451, 36649568..36649752,36649860..36649986,36650110..36650183, 36650269..36650345,36650441..36650477,36650596..36650762, 36651018..36651201,36651296..36651373,36651508..36651627, 36651711..36651770,36652779..36652865,36652967..36653066, 36653157..36653326,36654453..36654749,36654834..36654950, 36655061..36655162,36655248..36655397,36655494..36655658, 36655731..36655907,36656740..36656862,36657020..36657100, 36657190..36657306,36657487..36657659,36657934..36658011, 36658115..36658262,36659080..36659202,36659307..36659363, 36659443..36659553,36659631..36659822,36659900..36660073, 36660667..36660777,36660873..36660942,36661072..36661150, 36661385..36661487,36661636..36661806,36661926..36662048, 36662126..36662239,36663072..36663178,36663266..36663317, 36663402..36663508,36663605..36663664,36663767..36663881, 36664024..36664134,36664218..36664355,36664430..36664552, 36664659..36664730,36665306..36665418,36666670..36666828, 36667060..36667156,36667236..36667418,36667694..36667888, 36667962..36668141,36668246..36668378,36668523..36668601, 36668777..36668819) /locus_tag="TCM_026122" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="ILITYHIA isoform 3" /protein_id="EOY10812.1" /db_xref="Phytozome:GSVIVT01026340001" /db_xref="TAIR:AT1G64790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I894" /translation="MNSLPLLPIQAMEKQSKFQTHVGCYTLLKWSCLLLSRSQFATVS RNALCRVAAAQASLLHIVMQRSFRERRACIKSFFHLFSQSPDVYNTYIEEIKDARIPY KDAPELLCLLLEFSSVVPSKFEQSKPIFLDIYVKAVLNAREKPTKGLSESFHPLFARM SHEDLQSTVIPSLVKMLKRNPEIVLESVGILLSLVNLDLSKYAMEILSVVLPQARHAE DGRRIGALTVVRCLSQKSSNPDAFESMFNAIKAVLGGSEGRLAFPYQRIGMMNALQEL SNAPEGKYLNNLSRTVCGFLLTCYKDEGNEEVKLAILSAIASWAARFVDALQPDLVSF FASGLKEKEALRRGHLRSLLAICKNSDALLQISSLLGPLLQLVKTGFTKAVQRLDGIY ALSIVGKIAAADIKAEETVAKEKIWSLISQNEPSLVAISMASKLSIEDCISCVDLLEV LLVEHSRRVLETFSAKLLLQLLLFLMCHSSWDVRKTTYDATKKIVAAAPQLSEILLVE FSDSLSLVGEKINALKTSDADNSPDTQVPILPSVEVLVKALAVISSTALATTPSASTR VIVCSHHPCIIGTAKRDAVWRRLHKCLRALGFDVIGIISANIANICKGLVGPLGLMSA NPLEQNAAIYSLCTLMSIAPEDTYSEFEKHLINLPDRHSHDMLSENDIQIFRTPEGIL SNEQGVYVAESVTSKNTKQQDRINSNHSGKRETSSRAAGGGGKKDIGKSMKKADKGKT AKEEAREQLLREEASIREKVREIQKNLSLMLNALGDMAVANPVFAHSQLPSLVKFVDP LLRSPIVGDVAYDTSVKLSRCLVHPLCNWALDIATALRLIVTDEVCLWELIPLVDEEA DERPSLGLFERIVNGLSVSCKSGPLPVDSFTFVFPIMEQILLSSKRTGLHDDVLRILY LHLDPLLPLPRLRMLSALYHVLGVVPAYQASIGPALNELCLGLQPEEVASALYGVYAK DVHVRMTCLNAVKCIPAVSGRALPQNVEVATNIWIALHDPEKSIAEAAEDVWDRYGYD FGTDYSGIFKALSHVNYNVRVAAAEALAAAMDEIPDSIQESLSTLFSLYIRDSAFGEE NLDAGWLGRQGIALALHSAADVLRTKDLPVVMTFLISRALADPNADVRGRMINAGIMI IDRHGRENVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAV VEKLLDVLNTPSEAVQQAVSTCLSPLMQSKQDDAAALVSRLLDQLMKNDKYGERRGAA FGLAGVVKGFGLSSLKKYGIVAVLREGFADRNSAKSREGALLAFECLCEYLGRLFEPY VIQMLPLLLVSFSDQVIAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTK QSSVQLLGAMAYCAPQQLSQCLPRIVPKLTEVLTDTHPKVQSAGQLALQQVGSVIKNP EISSLVPTLLMGLTDPNDYTKYSLDILLQTTFINSIDAPSLALLVPIVHRGLRERSAD TKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG MGEENFPDLVPWLFDTLKSDNSNVERSGAAQGLSEVLAALGTEYFEDILPDIIRNCSH QKAAVRDGYLTLFKYFPRSLGVQFQNYLQLVLPAILDGLADENESVRDAALCAGHVLV EHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEG ASTEAHGRAIIEVLGRDKRNEVLAALYMVRTDVSITVRQAALHVWKTIVANTPKTLKE IMPVLMNTLITSLASASSERRQVAGRALGELVRKLGERVLPLIIPILSQGLKNPDASR RQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSAPEVRESAGLAFSTLYKSAG MQAIDEIVPTLLHALEDDETSDTALDGLKQILSVRTTAVLPHILPKLVHCPLSAFNAH ALGALAEVAGPGLNYHLGTILPALLSAMGGDDVDVQPLAKEAAETVVLVIDEEGIESL ISELLRGVGDSEASIRRSSSYLIGYFFKNSKLYLVDETLNMISTLIVLLSDSDSATVV VAWEALSRVVSSVPKEVLPSCIKLVRDAVSTARDKERRKKKGGPVVIPGFCLPKALQP LLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQ VKSAILSTLSIMIRKGGIALKPFLPQLQTTFIKCLQDNTRTVRSSAALALGKLSALST RVDPLVSDLLSSLQASDSGVREAILTALKGVVKHAGKSVSPATRTRVYALLKDLIHHD DDQVRMFASSILGVISQYMDESQLSDLLQELLDLSSSSNWADRHGSVLTFSSLLRHNP STVFMSPESASILICLKSSLKDEKFPLRETSTKALGRLLLCQVQSNPSNSTSLVDILS SVLSAMQDDSSEVRRRALSAIKAAAKANPSVITTHLSLLGPALAECLKDSSTPVRLAA ERCALHTFQLTKGTENVQASQKYITGLDARRISKFPEHSDDSEESEDDSASS" mRNA join(36648066..36648397,36648493..36648624, 36648767..36649148,36649305..36649451,36649568..36649752, 36649860..36649986,36650110..36650183,36650269..36650345, 36650441..36650477,36650596..36650762,36651018..36651201, 36651296..36651373,36651508..36651627,36651711..36651770, 36652779..36652865,36652967..36653066,36653157..36653326, 36654453..36654749,36654834..36654950,36655061..36655162, 36655248..36655397,36655494..36655658,36655731..36655907, 36656740..36656862,36657020..36657100,36657190..36657306, 36657487..36657659,36657934..36658011,36658115..36658262, 36659080..36659202,36659307..36659363,36659443..36659553, 36659631..36659822,36659900..36660073,36660667..36660777, 36660873..36660942,36661072..36661150,36661385..36661487, 36661636..36661806,36661926..36662048,36662126..36662239, 36663072..36663178,36663266..36663317,36663402..36663508, 36663605..36663664,36663767..36663881,36664024..36664134, 36664218..36664355,36664430..36664552,36664659..36664730, 36665306..36665418,36666670..36666828,36667060..36667156, 36667236..36667418,36667694..36667888,36667962..36668141, 36668259..36668378,36668523..36668601,36668777..36669398) /locus_tag="TCM_026122" /product="ILITYHIA isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01026340001" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s04090.2" /inference="similar to AA sequence:Phytozome:GSVIVT01026340001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc203t2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc203t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1280t5" CDS join(36648149..36648397,36648493..36648624, 36648767..36649148,36649305..36649451,36649568..36649752, 36649860..36649986,36650110..36650183,36650269..36650345, 36650441..36650477,36650596..36650762,36651018..36651201, 36651296..36651373,36651508..36651627,36651711..36651770, 36652779..36652865,36652967..36653066,36653157..36653326, 36654453..36654749,36654834..36654950,36655061..36655162, 36655248..36655397,36655494..36655658,36655731..36655907, 36656740..36656862,36657020..36657100,36657190..36657306, 36657487..36657659,36657934..36658011,36658115..36658262, 36659080..36659202,36659307..36659363,36659443..36659553, 36659631..36659822,36659900..36660073,36660667..36660777, 36660873..36660942,36661072..36661150,36661385..36661487, 36661636..36661806,36661926..36662048,36662126..36662239, 36663072..36663178,36663266..36663317,36663402..36663508, 36663605..36663664,36663767..36663881,36664024..36664134, 36664218..36664355,36664430..36664552,36664659..36664730, 36665306..36665418,36666670..36666828,36667060..36667156, 36667236..36667418,36667694..36667888,36667962..36668141, 36668259..36668309) /locus_tag="TCM_026122" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="ILITYHIA isoform 4" /protein_id="EOY10813.1" /db_xref="Phytozome:GSVIVT01026340001" /db_xref="TAIR:AT1G64790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I894" /translation="MKSFAAALVQAMEKQSKFQTHVGCYTLLKWSCLLLSRSQFATVS RNALCRVAAAQASLLHIVMQRSFRERRACIKSFFHLFSQSPDVYNTYIEEIKDARIPY KDAPELLCLLLEFSSVVPSKFEQSKPIFLDIYVKAVLNAREKPTKGLSESFHPLFARM SHEDLQSTVIPSLVKMLKRNPEIVLESVGILLSLVNLDLSKYAMEILSVVLPQARHAE DGRRIGALTVVRCLSQKSSNPDAFESMFNAIKAVLGGSEGRLAFPYQRIGMMNALQEL SNAPEGKYLNNLSRTVCGFLLTCYKDEGNEEVKLAILSAIASWAARFVDALQPDLVSF FASGLKEKEALRRGHLRSLLAICKNSDALLQISSLLGPLLQLVKTGFTKAVQRLDGIY ALSIVGKIAAADIKAEETVAKEKIWSLISQNEPSLVAISMASKLSIEDCISCVDLLEV LLVEHSRRVLETFSAKLLLQLLLFLMCHSSWDVRKTTYDATKKIVAAAPQLSEILLVE FSDSLSLVGEKINALKTSDADNSPDTQVPILPSVEVLVKALAVISSTALATTPSASTR VIVCSHHPCIIGTAKRDAVWRRLHKCLRALGFDVIGIISANIANICKGLVGPLGLMSA NPLEQNAAIYSLCTLMSIAPEDTYSEFEKHLINLPDRHSHDMLSENDIQIFRTPEGIL SNEQGVYVAESVTSKNTKQQDRINSNHSGKRETSSRAAGGGGKKDIGKSMKKADKGKT AKEEAREQLLREEASIREKVREIQKNLSLMLNALGDMAVANPVFAHSQLPSLVKFVDP LLRSPIVGDVAYDTSVKLSRCLVHPLCNWALDIATALRLIVTDEVCLWELIPLVDEEA DERPSLGLFERIVNGLSVSCKSGPLPVDSFTFVFPIMEQILLSSKRTGLHDDVLRILY LHLDPLLPLPRLRMLSALYHVLGVVPAYQASIGPALNELCLGLQPEEVASALYGVYAK DVHVRMTCLNAVKCIPAVSGRALPQNVEVATNIWIALHDPEKSIAEAAEDVWDRYGYD FGTDYSGIFKALSHVNYNVRVAAAEALAAAMDEIPDSIQESLSTLFSLYIRDSAFGEE NLDAGWLGRQGIALALHSAADVLRTKDLPVVMTFLISRALADPNADVRGRMINAGIMI IDRHGRENVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAV VEKLLDVLNTPSEAVQQAVSTCLSPLMQSKQDDAAALVSRLLDQLMKNDKYGERRGAA FGLAGVVKGFGLSSLKKYGIVAVLREGFADRNSAKSREGALLAFECLCEYLGRLFEPY VIQMLPLLLVSFSDQVIAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTK QSSVQLLGAMAYCAPQQLSQCLPRIVPKLTEVLTDTHPKVQSAGQLALQQVGSVIKNP EISSLVPTLLMGLTDPNDYTKYSLDILLQTTFINSIDAPSLALLVPIVHRGLRERSAD TKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG MGEENFPDLVPWLFDTLKSDNSNVERSGAAQGLSEVLAALGTEYFEDILPDIIRNCSH QKAAVRDGYLTLFKYFPRSLGVQFQNYLQLVLPAILDGLADENESVRDAALCAGHVLV EHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEG ASTEAHGRAIIEVLGRDKRNEVLAALYMVRTDVSITVRQAALHVWKTIVANTPKTLKE IMPVLMNTLITSLASASSERRQVAGRALGELVRKLGERVLPLIIPILSQGLKNPDASR RQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSAPEVRESAGLAFSTLYKSAG MQAIDEIVPTLLHALEDDETSDTALDGLKQILSVRTTAVLPHILPKLVHCPLSAFNAH ALGALAEVAGPGLNYHLGTILPALLSAMGGDDVDVQPLAKEAAETVVLVIDEEGIESL ISELLRGVGDSEASIRRSSSYLIGYFFKNSKLYLVDETLNMISTLIVLLSDSDSATVV VAWEALSRVVSSVPKEVLPSCIKLVRDAVSTARDKERRKKKGGPVVIPGFCLPKALQP LLPIFLQGLISGSAELREQAALGLGELIEVTSEQSLKEFVIPITGPLIRIIGDRFPWQ VKSAILSTLSIMIRKGGIALKPFLPQLQTTFIKCLQDNTRTVRSSAALALGKLSALST RVDPLVSDLLSSLQASDSGVREAILTALKGVVKHAGKSVSPATRTRVYALLKDLIHHD DDQVRMFASSILGVISQYMDESQLSDLLQELLDLSSSSNWADRHGSVLTFSSLLRHNP STVFMSPESASILICLKSSLKDEKFPLRETSTKALGRLLLCQVQSNPSNSTSLVDILS SVLSAMQDDSSEVRRRALSAIKAAAKLSQLIFHYSALRLLNV" mobile_element complement(36662951..36663017) /note="source:CACAO_M_S_E89710_F231_scaffold_8 1176 1242" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 36662959..36663052 /note="source:CACAO_M_E14153_F378_scaffold_3 1753 1850" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 36669819..36669948 /note="source:CACAO_Mutator_E592_scaffold_3 3 143" /mobile_element_type="transposon:TIR/Mutator" gene 36673514..36678039 /locus_tag="TCM_026123" /note="dbxref CacaoGD:Thecc1EG026123" mRNA join(36673514..36674336,36674456..36674542, 36674681..36674950,36675064..36675234,36675517..36675570, 36676912..36677058,36677160..36678039) /locus_tag="TCM_026123" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29680.m001734" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038694t1" /inference="similar to AA sequence:ricco:29680.m001734" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g06812t00001" CDS join(36674112..36674336,36674456..36674542, 36674681..36674950,36675064..36675234,36675517..36675570, 36676912..36677058,36677160..36677537) /locus_tag="TCM_026123" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29680.m001734; paralog of Thecc1EG038694t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY10814.1" /db_xref="TAIR:AT5G18460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HI16" /translation="MACDIVAKKRGVSSLLPHHHLPLLLLLLLSFLFVTKFTLVSGLN YTKYRQVSSLRLERIQKHLAKINKPAVMTIESPDGDIIDCVHKRKQPALDHPLLKNHK IQRVPSEMPKVKTLKQDEARESMGNVGAVKGAWQMWHGNGTRCPKGTVPIRRSSLHDV LRAKSLFDFGKKQRRFTPTRRTDAPDVVSGNGHEHAIAYTGTSQEVFGAKATINVWDP SIQVVNEFSLSQIWVLSGSFDGSDLNSIEAGWQVSPELYGDSRPRLFTYWTADSYQAT GCYNLLCAGFVQTNSRIAIGAAISPISLYAANQYDITILIWKDPKLGNWWMGFGDNTL VGYWPAELFTHLADHATMVEWGGEVVNSRANGQHTSTQMGSGHFAEEGFGKSSYFRNL EIVDADNSLSSVHDISTLAENTNCYNIKSSYNNEWGTYFYYGGPGNNPRCP" mRNA join(36674313..36674336,36674681..36674950, 36675064..36675234,36675517..36675570,36676912..36677058, 36677160..36677874) /locus_tag="TCM_026123" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29680.m001734" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038694t1" /inference="similar to AA sequence:ricco:29680.m001734" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc526t3; inference alignment:Newbler:10:TSA:cgbaP2_g06812t00001" CDS join(36674325..36674336,36674681..36674950, 36675064..36675234,36675517..36675570,36676912..36677058, 36677160..36677537) /locus_tag="TCM_026123" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29680.m001734; paralog of Thecc1EG038694t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY10815.1" /db_xref="TAIR:AT5G18460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C5YMQ3" /translation="MTIERVPSEMPKVKTLKQDEARESMGNVGAVKGAWQMWHGNGTR CPKGTVPIRRSSLHDVLRAKSLFDFGKKQRRFTPTRRTDAPDVVSGNGHEHAIAYTGT SQEVFGAKATINVWDPSIQVVNEFSLSQIWVLSGSFDGSDLNSIEAGWQVSPELYGDS RPRLFTYWTADSYQATGCYNLLCAGFVQTNSRIAIGAAISPISLYAANQYDITILIWK DPKLGNWWMGFGDNTLVGYWPAELFTHLADHATMVEWGGEVVNSRANGQHTSTQMGSG HFAEEGFGKSSYFRNLEIVDADNSLSSVHDISTLAENTNCYNIKSSYNNEWGTYFYYG GPGNNPRCP" gene 36677649..36682422 /locus_tag="TCM_026124" /note="dbxref CacaoGD:Thecc1EG026124" mRNA join(36677649..36677780,36678846..36681184, 36682016..36682422) /locus_tag="TCM_026124" /product="Tetratricopeptide repeat-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT1G12700.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026736t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s04770.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.37 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10126t1" CDS join(36679377..36681184,36682016..36682226) /locus_tag="TCM_026124" /note="paralog of Thecc1EG026736t1" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative" /protein_id="EOY10816.1" /db_xref="Phytozome:POPTR_0005s04770.1" /db_xref="TAIR:AT1G12700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I898" /translation="MMRGWKSTSLQLGNSKSLTSLTYLYLSLSPPVFFYSFQTQFFST SFSRSKKSKYLFGKIDDALAFFNHMLRTRPRPSIVEFNQFVGAVVRMQHYETAISLLR QMELRGIRHDVYTLNILLNCYCRLHRSDIGFSFLGKMLKLGNKPDTTTFNTLVNGLCV ESNIGEAVILFDEIVRNGYQPDLITYNTIINGLCKIGYTSGAIRLFRNMEQSGYLPDT VTYNTIIDSLCKDQLVTEALNLFSEMTAKDILPNVVTYSSLIHAMCDSGQWKEVMRLL TEMVVKNCKLDVVSYGILVDAFCKEGRVSEAHDIVEIMIRQGVDPNTITYTTLMDGYC LQGKMDEARKVLNLMIIKGCVPNIYGCNILVNGYCKLQKIDEAMEVFHEMSRNGLFPN TVTYTTLMNGMCQVGRLSAARELFKEMSARGLVPNTITYSTLLHGLCKHGHVHEAVEL FHFMQNSGIEANIVHYSILIDGLCQVGQLHVARKLFYALPVKGLRPNVYTCNIMIKRL CEERLPNEAFELFRKMGVHGFLEDSCSYNTMIKGFLLNDDVSRAMPILHEMVDKGFSA DSSTATMLVDLLCRNGGDRSIFELHRKNCEDDQNVSILRLKMWNEVERRYEETFNGAH GVHAVIQLWSFRHDSRLYFALNVVKEEAKSGVATTDGSNGHGASSNLG" gene 36684051..36684689 /locus_tag="TCM_026125" /note="dbxref CacaoGD:Thecc1EG026125" mRNA join(36684051..36684225,36684323..36684689) /locus_tag="TCM_026125" /product="RmlC-like cupins superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g36420.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003844t1" /inference="similar to AA sequence:Phytozome:Glyma20g36420.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10120t1" CDS join(36684116..36684225,36684323..36684542) /locus_tag="TCM_026125" /note="paralog of Thecc1EG003844t1" /codon_start=1 /product="RmlC-like cupins superfamily protein" /protein_id="EOY10817.1" /db_xref="Phytozome:Glyma20g36420.1" /db_xref="TAIR:AT3G04300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6K9G4" /translation="MATTSSTPGSSSDLSITVESKPSESRLSELGIKSWPKWGCPPGK YLLKFDAEEMCYLLKGKVKVYPKGSSEFVEFGAGDLVTIPQGLSCTWDVSAPIDKHYK FASSSSS" gene 36685814..36688560 /locus_tag="TCM_026126" /note="dbxref CacaoGD:Thecc1EG026126" mRNA join(36685814..36686172,36686652..36686726, 36686854..36686942,36687581..36687665,36687806..36687887, 36688097..36688560) /locus_tag="TCM_026126" /product="Nucleic acid-binding, OB-fold-like protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400050006.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032443t1" /inference="similar to AA sequence:ricco:29680.m001733" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14865t1" mRNA join(36685940..36686172,36686652..36686726, 36686854..36686942,36687581..36687665,36687806..36687887, 36688097..36688175,36688321..36688432) /locus_tag="TCM_026126" /product="Nucleic acid-binding, OB-fold-like protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400050006.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032443t1" /inference="similar to AA sequence:ricco:29680.m001733" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc192t7; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14865t1" mRNA join(36685940..36686172,36686652..36686726, 36686854..36686942,36687581..36687665,36687806..36687887, 36688159..36688176,36688256..36688432) /locus_tag="TCM_026126" /product="Nucleic acid-binding isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400050006.2" /inference="similar to AA sequence:frave:gene16696" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc192t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14865t1" mRNA join(36685951..36686172,36686652..36686726, 36686854..36686942,36687581..36687665,36687806..36687891, 36688265..36688432) /locus_tag="TCM_026126" /product="Nucleic acid-binding, OB-fold-like protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400050006.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032443t1" /inference="similar to AA sequence:frave:gene16696" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc136t4; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14865t1" CDS join(36686011..36686172,36686652..36686726, 36686854..36686942,36687581..36687665,36687806..36687887, 36688159..36688176,36688256..36688410) /locus_tag="TCM_026126" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene16696" /codon_start=1 /product="Nucleic acid-binding isoform 3" /protein_id="EOY10820.1" /db_xref="TAIR:AT5G38890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A2RVT9" /translation="MEEAEMVTPGEMLGRATELKAGKGAYVVQHNKNIYASLTGFRRI QSPPPDSPDQRPTVEVTGHKAHGPVPEPGSVVIARVTKVMARIASADIMCVGPKSVRE KFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRAVVLSLGDARAYYLSTAKNELGVVSA ESSAAKEGCQEIVLRKHDHRQLCITGPHDFSQILTVLGRKGAISQASLVESFFESFNF LIP" CDS join(36686011..36686172,36686652..36686726, 36686854..36686942,36687581..36687665,36687806..36687887, 36688097..36688175,36688321..36688327) /locus_tag="TCM_026126" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29680.m001733; paralog of Thecc1EG032443t1" /codon_start=1 /product="Nucleic acid-binding, OB-fold-like protein isoform 2" /protein_id="EOY10819.1" /db_xref="TAIR:AT5G38890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A2RVT9" /translation="MEEAEMVTPGEMLGRATELKAGKGAYVVQHNKNIYASLTGFRRI QSPPPDSPDQRPTVEVTGHKAHGPVPEPGSVVIARVTKVMARIASADIMCVGPKSVRE KFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRAVVLSLGDARAYYLSTAKNELGVVSA ESSAGAAMVPISWTEMQCPLTGQIEQRKVAKF" CDS join(36686011..36686172,36686652..36686726, 36686854..36686942,36687581..36687665,36687806..36687891, 36688265..36688277) /locus_tag="TCM_026126" /note="encoded by transcript variant 4; alternatively spliced; dbxref frave:gene16696; paralog of Thecc1EG032443t1" /codon_start=1 /product="Nucleic acid-binding, OB-fold-like protein isoform 4" /protein_id="EOY10821.1" /db_xref="TAIR:AT5G38890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A2RVT9" /translation="MEEAEMVTPGEMLGRATELKAGKGAYVVQHNKNIYASLTGFRRI QSPPPDSPDQRPTVEVTGHKAHGPVPEPGSVVIARVTKVMARIASADIMCVGPKSVRE KFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRAVVLSLGDARAYYLSTAKNELGVVSA ESSAGNKET" CDS join(36686011..36686172,36686652..36686726, 36686854..36686942,36687581..36687665,36687806..36687887, 36688097..36688188) /locus_tag="TCM_026126" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29680.m001733; paralog of Thecc1EG032443t1" /codon_start=1 /product="Nucleic acid-binding, OB-fold-like protein isoform 1" /protein_id="EOY10818.1" /db_xref="TAIR:AT5G38890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A2RVT9" /translation="MEEAEMVTPGEMLGRATELKAGKGAYVVQHNKNIYASLTGFRRI QSPPPDSPDQRPTVEVTGHKAHGPVPEPGSVVIARVTKVMARIASADIMCVGPKSVRE KFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRAVVLSLGDARAYYLSTAKNELGVVSA ESSAGAAMVPISWTEMQCPLTGQIEQRKVAKVES" gene 36688770..36692159 /locus_tag="TCM_026127" /note="dbxref CacaoGD:Thecc1EG026127" mRNA join(36688770..36689134,36689232..36689291, 36689388..36689435,36690443..36690575,36690664..36690740, 36691186..36691256,36691356..36691446,36691544..36691991) /locus_tag="TCM_026127" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s04040.1" /inference="similar to AA sequence:Phytozome:GSVIVT01026324001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1180t2; inference alignment:Newbler:10:TSA:cgbaB_g02759t00001" mRNA join(36688796..36689134,36689232..36689291, 36689388..36689435,36690443..36690575,36690664..36690740, 36690997..36691095,36691186..36691256,36691544..36691991) /locus_tag="TCM_026127" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s04040.1" /inference="similar to AA sequence:Phytozome:GSVIVT01026324001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1129t4; inference alignment:Newbler:10:TSA:cgbaB_g02759t00001" mRNA join(36688841..36689134,36689232..36689291, 36689388..36689435,36690443..36690575,36690664..36690740, 36690997..36691095,36691186..36691256,36691356..36691446, 36691544..36692159) /locus_tag="TCM_026127" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s04040.1" /inference="similar to AA sequence:Phytozome:GSVIVT01026324001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02759t00001" CDS join(36688886..36689134,36689232..36689291, 36689388..36689435,36690443..36690575,36690664..36690740, 36690997..36691095,36691186..36691256,36691356..36691446, 36691544..36691654) /locus_tag="TCM_026127" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY10822.1" /db_xref="Phytozome:GSVIVT01026324001" /db_xref="TAIR:AT5G37360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93Z11" /translation="MPSSSSPLLHLQPLTFPSTPSHSPTLLFHQNLNYFPSKTSLRKP FNSKKLQLSKPQTIPFALTESDSPKSLEPNPQTLLQEVADSFDLPSDYFSQLPGDLRL DLNDAAFDLSNGPVIDECGLELGETLLNISRAWEQADTSTSRTLASKLPLLGSSLTDN AKSAFGRRLVTAGRRFQAMGQYGQGELQKIAKAMTAAGKLLSAISVSATSDEQPKMET RMLKFGDLQVEVTSEKANIGAAIGFVFGILSWQIAQGIQSIPESSLEYANDNALLLAK SLRGALLALFYSSTFLSGFTTIGLVLLGRQLKAEEK" CDS join(36688886..36689134,36689232..36689291, 36689388..36689435,36690443..36690575,36690664..36690740, 36691186..36691256,36691356..36691446,36691544..36691654) /locus_tag="TCM_026127" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY10824.1" /db_xref="Phytozome:GSVIVT01026324001" /db_xref="TAIR:AT5G37360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93Z11" /translation="MPSSSSPLLHLQPLTFPSTPSHSPTLLFHQNLNYFPSKTSLRKP FNSKKLQLSKPQTIPFALTESDSPKSLEPNPQTLLQEVADSFDLPSDYFSQLPGDLRL DLNDAAFDLSNGPVIDECGLELGETLLNISRAWEQADTSTSRTLASKLPLLGSSLTDN AKSAFGRRLVTAGRRFQAMGQYGQGELQKFGDLQVEVTSEKANIGAAIGFVFGILSWQ IAQGIQSIPESSLEYANDNALLLAKSLRGALLALFYSSTFLSGFTTIGLVLLGRQLKA EEK" CDS join(36688886..36689134,36689232..36689291, 36689388..36689435,36690443..36690575,36690664..36690740, 36690997..36691095,36691186..36691256,36691544..36691550) /locus_tag="TCM_026127" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY10823.1" /db_xref="Phytozome:GSVIVT01026324001" /db_xref="TAIR:AT5G37360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93Z11" /translation="MPSSSSPLLHLQPLTFPSTPSHSPTLLFHQNLNYFPSKTSLRKP FNSKKLQLSKPQTIPFALTESDSPKSLEPNPQTLLQEVADSFDLPSDYFSQLPGDLRL DLNDAAFDLSNGPVIDECGLELGETLLNISRAWEQADTSTSRTLASKLPLLGSSLTDN AKSAFGRRLVTAGRRFQAMGQYGQGELQKIAKAMTAAGKLLSAISVSATSDEQPKMET RMLKFGDLQVEVTSEKANIGAAIGFVFGL" mobile_element 36693289..36693384 /note="source:scaffold_3_CACTA_0396 889 984" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(36694025..36694506) /note="source:CACAO_Again_on_E66_scaffold_2 455 945" /mobile_element_type="transposon:TIR/hAT" gene 36694980..36699589 /locus_tag="TCM_026128" /note="dbxref CacaoGD:Thecc1EG026128" mRNA join(36694980..36695748,36695836..36696537, 36697486..36697538,36697629..36697649,36697826..36697891, 36697990..36698602,36699278..36699589) /locus_tag="TCM_026128" /product="Ammonium transporter 1,2" /inference="alignment:exonerate- protein:2:ricco:29680.m001730" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026129t1" /inference="similar to AA sequence:frave:gene16702" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10140t1" CDS join(36695013..36695748,36695836..36696537, 36697486..36697538,36697629..36697649,36697826..36697891, 36697990..36698100) /locus_tag="TCM_026128" /note="dbxref frave:gene16702; paralog of Thecc1EG026129t1" /codon_start=1 /product="Ammonium transporter 1,2" /protein_id="EOY10825.1" /db_xref="TAIR:AT1G64780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZPJ8" /translation="MASLTCTASDLVPLLSSSSSANATALASFLCTRFSTISDQLSDA THAIDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNIMNIMLTNVLDAAAGALSYYLFG FAFAFGSPSNGFIGRHFFGLKAYPSPSGDYSFFRYQWAFAIAAAGITSGSIAERTQFV AYLMYSSFLTGFVYPIVSHWFWSGDGWASATRSENLLFGSGVIDFAGSGVVHMVGGIA GLWGALIEGPRLGRFDRAGRSVALRGHRYGGGGGYYGQWSAIGRTAVTTTMAGCTAGL TTLFSKRLLVSNWSVIDVCNGLLGGFAAITSGCSVVEPWAAIICGFVAAWVLIGFNIL ASKWKYDDPLEAAQLHGGCGAWGLLFTGLFATEAYVNEVYPGRPGRPYGLFMGGGGKL LGAQIIQILVIAGWVTATMGPLFYVLHKMKLLRISENDETAGMDLTRHGGFAYAYHDA EDLSLTPGFMMTKIEPTNRSPSGSNNTLQYKWKAISPFCSSEGTVHQFGDLQLEGIQS IPESSLEFANDKALLLAKSLRGALLTLFYLSTFLSALTIIGLVLLGRQPKSEEK" gene 36701590..36703893 /locus_tag="TCM_026129" /note="dbxref CacaoGD:Thecc1EG026129" mRNA 36701590..36703893 /locus_tag="TCM_026129" /product="Ammonium transporter 1,2" /inference="alignment:exonerate- protein:2:ricco:29680.m001730.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026128t1" /inference="similar to AA sequence:frave:gene16702" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaL_g08635t00001" CDS 36701888..36703420 /locus_tag="TCM_026129" /note="dbxref frave:gene16702; paralog of Thecc1EG026128t1" /codon_start=1 /product="Ammonium transporter 1,2" /protein_id="EOY10826.1" /db_xref="TAIR:AT1G64780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZPJ8" /translation="MASLTCTASDLVPLLSSSSSTNATALASFLCTRFSTISDQLSDA THAIDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGALSYYLFG FAFAFGSPSNGFIGRHFFGLKTYPSPSGDYSFFLYQWAFAIAAAGITSGSIAERTQFV AYLIYSSFLTGFVYPIVSHWFWSGDGWASATGSENLLFGSGVIDFAGSGVVHMVGGIA GLWGALIEGPRLGRFDRAGRSVALRGHSASLVVLGTFLLWFGWYGFNPGSFLTIAKGY GGGGGYYGQWSAIGRTAVTTTMAGCTAALTTLFSKRLLVGHWNVIDVCNGLLGGFAAI TSGCSVVEPWAAIICGFVAAWVLIGFNILASKLKYDDPLEAAQLHGGCGAWGLLFTGL FATEAYVNEVYPGRPGRPYGLFMGGGGKLLGAQLIQILVIAGWVTATMGPLFYVLHKM KLLRISENDETAGMDLTRHGGFAYAYHDEEDLSLTPGFMMTKIEPTNGSPSEGQTSPS NV" gene 36703752..36707800 /locus_tag="TCM_026130" /note="dbxref CacaoGD:Thecc1EG026130" mRNA join(36703752..36703914,36706237..36707800) /locus_tag="TCM_026130" /product="Lung seven transmembrane receptor, putative" /inference="alignment:exonerate- protein:2:ricco:29680.m001727" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022030t1" /inference="similar to AA sequence:ricco:29680.m001727" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.29 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10155t1" CDS 36706279..36707628 /locus_tag="TCM_026130" /note="dbxref ricco:29680.m001727; paralog of Thecc1EG022030t1" /codon_start=1 /product="Lung seven transmembrane receptor, putative" /protein_id="EOY10827.1" /db_xref="TAIR:AT5G18520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S7P0" /translation="MMEHFNFYTTFLHHPLLQLLYALLFILSSIPVSLSEIKNTWVFD DYRSMILFESFGFSKNGHVEISVRNVSWTSRHQKTQPNPSSMGFFIANIHSLRSIWNE SESKEGFCVLSRRYGKVIFKFENLTADSTYSGSIEIDDPDKYSLVFGNCQPEFRVSMH VHTEMYNLKEGEKDFLPAGQTPLPRLFFFFFLIYAAFLLIWVFACINQKPRVEKIHLI MAALLLFKCLKMICASEDKMYVRKTGTPHGWDVAFYIFGFFKGIMLFTVIILIGTGWS FLKPYLQEREKQVLMTVIPLQVLENITYVVISETGPATRDWMTWNQLFLLIDIACCCV VFFPIIWSIKSLREASKTDGKAGKNLEKLTLFKQFYIVVMGYLYFTRIMVSAVGAFLN YRLEWMMTVLEEGASLAFYVFIFYNFQPMEKNPYLVINDEEENAAAQMLEEDDSFEL" gene 36707989..36710180 /locus_tag="TCM_026131" /note="dbxref CacaoGD:Thecc1EG026131" mRNA join(36707989..36708297,36709268..36710180) /locus_tag="TCM_026131" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29680.m001726" /inference="similar to AA sequence:ricco:29680.m001726" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09488t00001" CDS join(36707995..36708297,36709268..36709801) /locus_tag="TCM_026131" /note="dbxref ricco:29680.m001726" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10828.1" /db_xref="TAIR:AT3G04310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S7N9" /translation="MGTQLIPFLKLAAPPFTSLPLLNLNKTLNTTRSANTNIVRCSST GSSQTGGQFRFDSQNSDDVDDEFEFSSSRKQRIWWSDFDDYDDVWDLDEDDEFWVFKV FRAFGWMLPAIAISLLLGSGPNAFIMALAVPLGQSALSLVFDKVSRRTSKRWKSTSSP KAKKKHSTRAPKSVRTNKRKQEANRNGGEKATYSSWLNMDGDLHDKGAKRGPKFGGWD QLDDQVETQKRAPSQKGNGLPKQQKKGKFGRIGRVRDTPLLLRVLIAVFPFLGSWTRF LF" gene 36711041..36715903 /locus_tag="TCM_026132" /note="dbxref CacaoGD:Thecc1EG026132" mRNA join(36711041..36711466,36712662..36712770, 36713422..36713712,36713851..36714265,36714390..36714653, 36714966..36715903) /locus_tag="TCM_026132" /product="Heme oxygenase-like, multi-helical isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s03960.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003902t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s03960.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1301t1" CDS join(36711141..36711466,36712662..36712770, 36713422..36713712,36713851..36714265,36714390..36714653, 36714966..36715381) /locus_tag="TCM_026132" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG003902t1" /codon_start=1 /product="Heme oxygenase-like, multi-helical isoform 1" /protein_id="EOY10829.1" /db_xref="Phytozome:POPTR_0019s03960.1" /db_xref="TAIR:AT5G32470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KFT7" /translation="MRLLFSSSPNPIKTLFHLARSHHRVYSSPPPPPRRSSNPMAIPS KSAVATGFPSEEGLARKFWLEFRRESLLSLYSPFALCLASGTLKIDTFRHYIAQDVHF LKAFAQAYELAEDCADDDDAKLAISKLRKSVLDELKMHDSFVKEWSSDIVKESTVNSA TVKYTEFLLATASGKVEGLKAAGKLATPFEKTKIAAYTLGAMTPCMALYAYLGKEFKA LLGPNERDHPYKKWIENYSSEGFQASSLQTEDLLDKLSVSLTGEELDIIEKLYHQAMK LEIEFFYAQPLTQPTVAPLTREHDPAQDRLMIFSDFDLTCTVVDSSAILAEIAILRAP KSDQNQPESQIARMSSPELRSTWSLLSGQYTEEYEQCIESILPSEKVEFNYEALHKAL EQLSDFEKKANSRVIESGVLKGLNLEDIKRAGELLILQSGCIDFFQKIIKNENLNANI HVLSYCWCADLIRAAFASGGVDDLTIHANEFSFEESVSTGEIVRKVESPIDKIQAFND ILQDCGNDRKNLTVYIGDSVGDLLCLLKADIGIVIGGSSTSLRRVARRYGISFVPLYP ALVKKQKEYAEGSPCIWKGQSGILYTASSWDDIHAFVLGW" mRNA join(36712443..36712510,36712662..36712770, 36713422..36713712,36713851..36714265,36714390..36714653, 36714966..36715903) /locus_tag="TCM_026132" /product="Heme oxygenase-like, multi-helical isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s03960.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003902t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s03960.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:PASA:2:TSA:puevd3b025278t1a2; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1301t1" CDS join(36712750..36712770,36713422..36713712, 36713851..36714265,36714390..36714653,36714966..36715381) /locus_tag="TCM_026132" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG003902t1" /codon_start=1 /product="Heme oxygenase-like, multi-helical isoform 2" /protein_id="EOY10830.1" /db_xref="Phytozome:POPTR_0019s03960.1" /db_xref="TAIR:AT5G32470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KFT7" /translation="MHDSFVKEWSSDIVKESTVNSATVKYTEFLLATASGKVEGLKAA GKLATPFEKTKIAAYTLGAMTPCMALYAYLGKEFKALLGPNERDHPYKKWIENYSSEG FQASSLQTEDLLDKLSVSLTGEELDIIEKLYHQAMKLEIEFFYAQPLTQPTVAPLTRE HDPAQDRLMIFSDFDLTCTVVDSSAILAEIAILRAPKSDQNQPESQIARMSSPELRST WSLLSGQYTEEYEQCIESILPSEKVEFNYEALHKALEQLSDFEKKANSRVIESGVLKG LNLEDIKRAGELLILQSGCIDFFQKIIKNENLNANIHVLSYCWCADLIRAAFASGGVD DLTIHANEFSFEESVSTGEIVRKVESPIDKIQAFNDILQDCGNDRKNLTVYIGDSVGD LLCLLKADIGIVIGGSSTSLRRVARRYGISFVPLYPALVKKQKEYAEGSPCIWKGQSG ILYTASSWDDIHAFVLGW" mobile_element 36717312..36717389 /note="source:scaffold_5_CACTA_0608 8761 8838" /mobile_element_type="transposon:TIR/CACTA" gene complement(36718411..36727462) /locus_tag="TCM_026133" /note="dbxref CacaoGD:Thecc1EG026133" mRNA complement(join(36718411..36719349,36722304..36722588, 36727363..36727462)) /locus_tag="TCM_026133" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045040t1" /note="quality class is weak-utrpoor, express is weak, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.32 coverage" CDS complement(join(36719300..36719349,36722304..36722577)) /locus_tag="TCM_026133" /note="paralog of Thecc1EG045040t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10831.1" /translation="MNNLMVEFKENMMREFEMTNLELMTYFLGLKFIQTNDYIMLHQR KLILELLRRFKMENCKFVNNPIAANLKLSSSANEDPADPSFFRSIIGRYYYMPWNSHS PTKLP" mobile_element 36721055..36721094 /note="source:CACAO_Mariner_E220_scaffold_9 11034 11073" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 36721291..36725083 /note="source:INTACT606_F271_scaffold_5-int 1 3793" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 36725150..36725225 /note="source:scaffold_7_CACTA_0795 3460 3533" /mobile_element_type="transposon:TIR/CACTA" mobile_element 36726273..36726392 /note="source:MITE_Unknown_4 922 1037" /mobile_element_type="transposon:TIR/MITE" gene complement(36727509..36731921) /locus_tag="TCM_026135" /note="dbxref CacaoGD:Thecc1EG026135" mRNA complement(join(36727509..36727894,36728196..36728319, 36728437..36728704,36728833..36728961,36729051..36729188, 36729293..36729400,36730140..36730489,36730987..36731107, 36731349..36731921)) /locus_tag="TCM_026135" /product="Plant glycogenin-like starch initiation protein 6 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01023535001" /inference="similar to AA sequence:ricco:29680.m001722" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00823t00002" mRNA complement(join(36727541..36727894,36728196..36728319, 36728470..36728704,36728833..36728961,36729051..36729188, 36729293..36729400,36730140..36730489,36730987..36731107, 36731349..36731721)) /locus_tag="TCM_026135" /product="Plant glycogenin-like starch initiation protein 6 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01023535001" /inference="similar to AA sequence:ricco:29680.m001722" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10315t3; inference alignment:Newbler:10:TSA:cgbaL_g00823t00002" CDS complement(join(36727765..36727894,36728196..36728319, 36728470..36728704,36728833..36728961,36729051..36729188, 36729293..36729400,36730140..36730489,36730987..36731107, 36731349..36731591)) /locus_tag="TCM_026135" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29680.m001722" /codon_start=1 /product="Plant glycogenin-like starch initiation protein 6 isoform 2" /protein_id="EOY10833.1" /db_xref="TAIR:AT5G18480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C5C7" /translation="MKFPKPSILILVVLITIQSKAVLGTKVQSSSTNAYVTLLYGDEF LLGVRVLGKSIRDTGSTKDMVVLVSDGVSDYAKRLLKADGWIVEKISLLANPNQVRPK RFWGVYTKLKIFNMTNYKKVVYLDADTIVVKSIEDLFKCEKFCANLKHSERLNSGVMV VEPSEAVFNDMMGKVNTLPSYTGGDQGFLNSYYSDFPNAHVFDPNIPLEGLKSRPVPK MERLSTLYNADVGLYMLANKWMVDESELRVIHYTLGPLKPWDWWTSWLLKPVDVWQNV REQLEESLPGTGGGKNPNEELLVKFLFLIPFCALLFYYYRSFVQGGGLLCRTSLVNQI RHFYYIIRSSGTVAYTGVSSSPTINSNHQFPVPAYLGGISVFVCFVAAVVSLGIALSI VPRQVMPWTGLLLMYEWTFTIFFLLFGAFLHLTHQWGRRTATQLGSFSSRHQRQASSC DIVTWYYGLGMAFLAIAAPSLPCIFGITALFVRLGLMVVGGLILASFMTYASEHLAIR SFLKGLEDRDTTRSMSA" CDS complement(join(36727765..36727894,36728196..36728319, 36728437..36728704,36728833..36728961,36729051..36729188, 36729293..36729400,36730140..36730489,36730987..36731107, 36731349..36731591)) /locus_tag="TCM_026135" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29680.m001722" /codon_start=1 /product="Plant glycogenin-like starch initiation protein 6 isoform 1" /protein_id="EOY10832.1" /db_xref="TAIR:AT5G18480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C5C7" /translation="MKFPKPSILILVVLITIQSKAVLGTKVQSSSTNAYVTLLYGDEF LLGVRVLGKSIRDTGSTKDMVVLVSDGVSDYAKRLLKADGWIVEKISLLANPNQVRPK RFWGVYTKLKIFNMTNYKKVVYLDADTIVVKSIEDLFKCEKFCANLKHSERLNSGVMV VEPSEAVFNDMMGKVNTLPSYTGGDQGFLNSYYSDFPNAHVFDPNIPLEGLKSRPVPK MERLSTLYNADVGLYMLANKWMVDESELRVIHYTLGPLKPWDWWTSWLLKPVDVWQNV REQLEESLPGTGGGKNPNEELLVKFLFLIPFCALLFYYYRSFVQGGGLLCRTSLVNQI RHFYYIIRSSGTVAYTGVSSSPTINSNHQFPVPAYLGGISVFVCFVAAVVSLGIALSI VPRQVMPWTGLLLMYEWTFTIFFLLFGAFLHLTHQWGRRTATQLGSFSSRTDSFDFDS TKGHQRQASSCDIVTWYYGLGMAFLAIAAPSLPCIFGITALFVRLGLMVVGGLILASF MTYASEHLAIRSFLKGLEDRDTTRSMSA" mobile_element 36730851..36731085 /note="source:scaffold_10_CACTA_0140 2549 2777" /mobile_element_type="transposon:TIR/CACTA" gene complement(36731970..36736676) /locus_tag="TCM_026136" /note="dbxref CacaoGD:Thecc1EG026136" mRNA complement(join(36731970..36732506,36733353..36736171)) /locus_tag="TCM_026136" /product="Cc-nbs-lrr resistance protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01023798001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017134t1" /inference="similar to AA sequence:Phytozome:POPTR_0018s03970.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1812t4" mRNA complement(join(36732203..36732506,36732700..36732985, 36733070..36733112,36733353..36735856,36736663..36736676)) /locus_tag="TCM_026136" /product="Cc-nbs-lrr resistance protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01023798001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017134t1" /inference="similar to AA sequence:Phytozome:POPTR_0018s03970.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:PASA:2:TSA:puevd3b025282t1a2; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1812t4" CDS complement(join(36732367..36732506,36733353..36735738)) /locus_tag="TCM_026136" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG017134t1" /codon_start=1 /product="Cc-nbs-lrr resistance protein, putative isoform 1" /protein_id="EOY10834.1" /db_xref="Phytozome:POPTR_0018s03970.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NA21" /translation="MAEAIVSAILPELAAIAIQNAREEWRLVTGVEKEVERLKSNLKA IQCELEDAEEKQFVNKRVQYWLDRFKQVSYDIEDVLDDWKTALHKLQTDGVETSSVKR RKVWPLSSYFSFGTQVARRHDIATRIKEINEELDEIAKDRVRIELIKSEIKQPNRSES TSFVHVSQILGRDEIKEKIISKLLSGPSEEGGCNNIPTITVVGMGGMGKTALSQLIYN DHRIQTHFENKIWVCVSDPFDQRQIAREILGGLNSGSTNLQNPISLESLLNEIREKIE GKKFFFVLDDVWSDRDQDWEPLKAAFQYGMPGSWILVTTRKESVARQMDLSHVFPLKQ LPDEMCWSIIAQIAFTGENSDRRGNLEDIGREIAKKCKGLPLAAKTLGDLLRDKQRRE EWQNVLSSEIWKSDFAQDIFQPLLLSYYDLPSTIRRCLLYCAIFQKDYRIRKDELIQR WMAQGYLTSADNFGRELEGEGYFKFLAARSFFQDFDNDADGNIRSCKMHDMVHEFVQF LTKYEFVTEKDVHLTLDLSYKKPRHLRLVAGPKGFPMSINSTEKLRSLVVVSLPDNGI TNEALQNLFSQSKRLRLLELRLLLQGAEGICCEIGKLIHLRYLCLIDCTDIKYLPEAL CELRNLQSLIIRFCPLLKKLPVGIGNLINLRYLSIERCRSVTYYPKGIGKLTSLMRLN RIIVRADRNDAEELSIGDLQHLDLLAGKIYVELEGDAIDGDEAKRAKLHNKIHLKQMY ISISPGIKEDEVVQALNPPSNLSVEIVDNQEDWIFRTIIVPLQSGQLGRLKTVISVYL LFTENCKINAYMKFRVSWFMPPHHHFPQSFHHQREDTAKDIVY" mRNA complement(join(36732709..36732969,36733070..36733112, 36733353..36735738)) /locus_tag="TCM_026136" /product="Cc-nbs-lrr resistance protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01023798001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017134t1" /inference="similar to AA sequence:Phytozome:POPTR_0018s03970.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1812t4; alternateUTRof:Thecc1EG026136t2; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1812t4" CDS complement(join(36733087..36733112,36733353..36735738)) /locus_tag="TCM_026136" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG017134t1" /codon_start=1 /product="Cc-nbs-lrr resistance protein, putative isoform 2" /protein_id="EOY10835.1" /db_xref="Phytozome:POPTR_0018s03970.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NA21" /translation="MAEAIVSAILPELAAIAIQNAREEWRLVTGVEKEVERLKSNLKA IQCELEDAEEKQFVNKRVQYWLDRFKQVSYDIEDVLDDWKTALHKLQTDGVETSSVKR RKVWPLSSYFSFGTQVARRHDIATRIKEINEELDEIAKDRVRIELIKSEIKQPNRSES TSFVHVSQILGRDEIKEKIISKLLSGPSEEGGCNNIPTITVVGMGGMGKTALSQLIYN DHRIQTHFENKIWVCVSDPFDQRQIAREILGGLNSGSTNLQNPISLESLLNEIREKIE GKKFFFVLDDVWSDRDQDWEPLKAAFQYGMPGSWILVTTRKESVARQMDLSHVFPLKQ LPDEMCWSIIAQIAFTGENSDRRGNLEDIGREIAKKCKGLPLAAKTLGDLLRDKQRRE EWQNVLSSEIWKSDFAQDIFQPLLLSYYDLPSTIRRCLLYCAIFQKDYRIRKDELIQR WMAQGYLTSADNFGRELEGEGYFKFLAARSFFQDFDNDADGNIRSCKMHDMVHEFVQF LTKYEFVTEKDVHLTLDLSYKKPRHLRLVAGPKGFPMSINSTEKLRSLVVVSLPDNGI TNEALQNLFSQSKRLRLLELRLLLQGAEGICCEIGKLIHLRYLCLIDCTDIKYLPEAL CELRNLQSLIIRFCPLLKKLPVGIGNLINLRYLSIERCRSVTYYPKGIGKLTSLMRLN RIIVRADRNDAEELSIGDLQHLDLLAGKIYVELEGDAIDGDEAKRAKLHNKIHLKQMY ISISPGIKEDEVVQALNPPSNLSVEIVDNQEDWIFRTIIVPLQSGQLGRLKTVISGSS EETAC" CDS complement(join(36733087..36733112,36733353..36735738)) /locus_tag="TCM_026136" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG017134t1" /codon_start=1 /product="Cc-nbs-lrr resistance protein, putative isoform 2" /protein_id="EOY10836.1" /db_xref="Phytozome:POPTR_0018s03970.1" /db_xref="TAIR:AT3G14470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NA21" /translation="MAEAIVSAILPELAAIAIQNAREEWRLVTGVEKEVERLKSNLKA IQCELEDAEEKQFVNKRVQYWLDRFKQVSYDIEDVLDDWKTALHKLQTDGVETSSVKR RKVWPLSSYFSFGTQVARRHDIATRIKEINEELDEIAKDRVRIELIKSEIKQPNRSES TSFVHVSQILGRDEIKEKIISKLLSGPSEEGGCNNIPTITVVGMGGMGKTALSQLIYN DHRIQTHFENKIWVCVSDPFDQRQIAREILGGLNSGSTNLQNPISLESLLNEIREKIE GKKFFFVLDDVWSDRDQDWEPLKAAFQYGMPGSWILVTTRKESVARQMDLSHVFPLKQ LPDEMCWSIIAQIAFTGENSDRRGNLEDIGREIAKKCKGLPLAAKTLGDLLRDKQRRE EWQNVLSSEIWKSDFAQDIFQPLLLSYYDLPSTIRRCLLYCAIFQKDYRIRKDELIQR WMAQGYLTSADNFGRELEGEGYFKFLAARSFFQDFDNDADGNIRSCKMHDMVHEFVQF LTKYEFVTEKDVHLTLDLSYKKPRHLRLVAGPKGFPMSINSTEKLRSLVVVSLPDNGI TNEALQNLFSQSKRLRLLELRLLLQGAEGICCEIGKLIHLRYLCLIDCTDIKYLPEAL CELRNLQSLIIRFCPLLKKLPVGIGNLINLRYLSIERCRSVTYYPKGIGKLTSLMRLN RIIVRADRNDAEELSIGDLQHLDLLAGKIYVELEGDAIDGDEAKRAKLHNKIHLKQMY ISISPGIKEDEVVQALNPPSNLSVEIVDNQEDWIFRTIIVPLQSGQLGRLKTVISGSS EETAC" gene complement(36736724..36740976) /locus_tag="TCM_026137" /note="dbxref CacaoGD:Thecc1EG026137" mRNA complement(join(36736724..36737573,36738076..36738122, 36740040..36740136,36740639..36740976)) /locus_tag="TCM_026137" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:frave:gene03173.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026138t1" /inference="similar to AA sequence:ricco:29680.m001722" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.15 coverage" CDS complement(join(36736857..36737573,36738076..36738122, 36740040..36740136,36740639..36740878)) /locus_tag="TCM_026137" /note="dbxref ricco:29680.m001722; paralog of Thecc1EG026138t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10837.1" /translation="MPKPLLSSIISSSEGRYREGYSLLSRLGLNEFWTKLSLVEMALK GMGSTEADVEGGIGLSGQPRLVPAIVLGLFGKILGQYYGVKLKWKRLSAAKEGRVRLE GNNSQFKIEEDVITTSLVAIRFSEEELIPLDHFFIRFLGNISFSTMSCPPKMSLVLPM SDGTPLVTELVPGEDLHLYIYQLLEYAVESGDMVIGLDTEWCMKEIKLGVFRTEYRHC VGLLKLCSAFGCVLIRLENSASASDSLKRFFAVKDIMFVGVRMKEDLQNLREEYGIII RNAVDLSEVSAKVLGQPELSAYGVRELASKVLSIDILPRSLLSIWTIRADSFPSLEQV ESAATDAYATYKVGRRLLGSGVDAFLLPLQKE" mobile_element complement(36738331..36738394) /note="source:INTACT292_F22_scaffold_5-int 8053 8121" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(36741023..36742016) /locus_tag="TCM_026138" /note="dbxref CacaoGD:Thecc1EG026138" mRNA complement(36741023..36742016) /locus_tag="TCM_026138" /product="Polynucleotidyl transferase, ribonuclease H-like superfamily protein" /inference="alignment:exonerate-protein:2:frave:gene03173" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026137t1" /inference="similar to AA sequence:ricco:29680.m001722" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc4226t1" CDS complement(36741234..36741872) /locus_tag="TCM_026138" /note="dbxref ricco:29680.m001722; paralog of Thecc1EG026137t1" /codon_start=1 /product="Polynucleotidyl transferase, ribonuclease H-like superfamily protein" /protein_id="EOY10838.1" /db_xref="TAIR:AT3G11770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5R0" /translation="MSCPCPPKMSLVFPMSDGTPVVTELVPGEDSLPYVYQLLEHAVE NGDMVIGLDTEWCMKEIKLGVFRSEYRPRVGLLKLCSAFGCVLIRLENSASASDSLKR FFAVKDVMFVGIRMKEDLQNLREEYGIIIRNAVDLSELSAKVLGQPQLSAYGVRELAS KVLSIDILPPRSLLSIWAIRSDSFPSLEQVESAATDAYATYKVGRRLLGTES" mobile_element complement(36742273..36742625) /note="source:CACAO_on_E27_scaffold_1 2 354" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 36743344..36744003 /note="source:CACAO_on_E745_scaffold_10 1 680" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(36743929..36744353) /note="source:CACAO_on_E446_scaffold_2 724 1280" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(36744582..36744737) /note="source:CACAO_hAT_E3863_scaffold_9 1 171" /mobile_element_type="transposon:TIR/hAT" mobile_element 36744607..36744756 /note="source:CACAO_on_SS_E42_scaffold_2 24400 24557" /mobile_element_type="transposon:TIR/Mutator" gene 36747041..36750396 /locus_tag="TCM_026139" /note="dbxref CacaoGD:Thecc1EG026139" mRNA join(36747041..36749757,36749864..36750396) /locus_tag="TCM_026139" /product="Leucine-rich receptor-like protein kinase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s04630.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003902t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s03830.1" /note="quality class is strong, express is medium, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.34 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc509t4" CDS join(36747105..36749757,36749864..36750264) /locus_tag="TCM_026139" /note="paralog of Thecc1EG003902t1" /codon_start=1 /product="Leucine-rich receptor-like protein kinase family protein" /protein_id="EOY10839.1" /db_xref="Phytozome:POPTR_0019s03830.1" /db_xref="TAIR:AT1G08590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FRS6" /translation="MKSHLLFFYCYIGLSLVFAKGAKIMPVPNDEASTLLLMKGSFVD ASDMLKDWKMPSNVVETRSAHCNWTGIWCNSRGFVEKLDLSNMNLSGIVSDHVQGLRS LSVLNLCNNGFDTSLPKSLANLTSLKSIDVSQNNFIGSFPKGLGMASGLTYVNASSNN LSGYLPEDLGYATSLESLDLRGSFFEGTIPTSFKNLQKLKYLGLSGNNLTGKLPRELG QLSSLETIILGYNEFEGEIPEEFGNLTNLQYLDLAVGTLSGQIPPSLGRLKQLTTVYL YKNNFTGRIPAELGNITSLVFLDLSDNQISGEIPAELAELKNLQLLNLMRNQLNGPVP IKLGELTKLEVLELWKNSLTGSLPMNLGRNSPLQWLDVSSNSLSGEIPPGLCDSGNLT KLLLFNNSFSGPIPAGLSTCKSLVRVRVQNNLISGTIPIGFGSLPILQRLELAKNNLT GQIPDDIALSTSLSFIDVSWNHLESTLPSSIISLPNLQTFIVSHNNLAGKFPDQFLDC PSLSVLDLSSNHFSGEIPESIASCEKLVNLNLRNNQFTEKIPKALATMPTLAMLDLSN NSLVGLIPENFGTSPALEMLNLSYNKLEGPVPSNGLLMTINPNDLAGNAGLCGGVLPP CSQSPIQTPRRPSNMHVKHVATGFIIGALVILSVAIAFFTGRWLYQKWYLYNSFFGDK FKESNKEWPWRLVAFQRLSFTSSDILSCIKESNIIGMGGTGIVYKAEVNRPRAVVAVK KLWRSETDIESSDDLFGEVNLLGRLRHRNIVRLLGYVHNETDVLMVYEYMPNGNLGTA VHGKQAGKLLVDWVSRYNIAVGVAQGLNYLHHDCYPPVIHRDIKSNNILLDANLEARI ADFGLARMMIHKNETVSMVAGSYGYIAPEYGYTLKVDEKTDIYSFGVVLLELLTGKMP LDPSFGESIDIVEWTRMKVKKSRGLEEVLDTTIAGQCKHVQEEMQLVLRIALLCTAKL PKDRPSMRDIITMLGEAKPRRKSVCHDNSSKERPIFSTSPVIGLL" gene complement(36750291..36762247) /locus_tag="TCM_026140" /note="dbxref CacaoGD:Thecc1EG026140" mRNA complement(join(36750291..36750490,36750586..36750918, 36751030..36751274,36751497..36751577,36752073..36752180, 36752321..36752380,36752714..36752788,36752909..36753094, 36753987..36754106,36754543..36754725,36755055..36755183, 36755474..36755675,36756087..36756208,36756943..36757116, 36757863..36757994,36758083..36758172,36758389..36758658, 36758756..36759049,36759146..36759346,36759708..36760179, 36760881..36762247)) /locus_tag="TCM_026140" /product="Metalloprotease m41 ftsh, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s04620.1" /inference="similar to AA sequence:Phytozome:GSVIVT01021791001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:PASA:2:TSA:puevd3b025286t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10311t1" mRNA complement(join(36750291..36750649,36750768..36750902, 36751080..36751274,36751497..36751577,36752073..36752180, 36752321..36752380,36752714..36752790,36752909..36753094, 36753987..36754106,36754543..36754725,36755474..36755675, 36756087..36756208,36756943..36757116,36757863..36757994, 36758083..36758172,36758389..36758658,36758756..36759049, 36759146..36759346,36759708..36760179,36760881..36761952)) /locus_tag="TCM_026140" /product="Metalloprotease m41 ftsh, putative isoform 7" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s04620.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s04620.1" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10311t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10311t1" mRNA complement(join(36750291..36750490,36750586..36750902, 36751030..36751274,36751497..36751577,36752073..36752180, 36752321..36752380,36752714..36752788,36752909..36753094, 36753987..36754106,36754543..36754725,36755055..36755183, 36755474..36755675,36756087..36756208,36756943..36757116, 36757863..36757994,36758083..36758172,36758389..36758658, 36758756..36759049,36759146..36759346,36759708..36760179, 36760881..36761952)) /locus_tag="TCM_026140" /product="Metalloprotease m41 ftsh, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s04620.1" /inference="similar to AA sequence:Phytozome:GSVIVT01021791001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10311t4; alternateUTRof:Thecc1EG026140t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10311t1" mRNA complement(join(36750291..36751274,36751497..36751577, 36752073..36752180,36752321..36752380,36752714..36752788, 36752909..36753094,36753987..36754106,36754543..36754725, 36755055..36755183,36755474..36755675,36756087..36756208, 36756943..36757116,36757863..36757994,36758083..36758172, 36758389..36758658,36758756..36759049,36759146..36759346, 36759708..36760179,36760881..36761952)) /locus_tag="TCM_026140" /product="Metalloprotease m41 ftsh, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s04620.1" /inference="similar to AA sequence:Phytozome:GSVIVT01021791001" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10311t5; alternateUTRof:Thecc1EG026140t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10311t1" mRNA complement(join(36750291..36750490,36750586..36750649, 36750768..36750918,36751080..36751274,36751497..36751579, 36752073..36752180,36752321..36752380,36752714..36752788, 36752909..36753094,36753987..36754106,36754543..36754725, 36755055..36755183,36755474..36755675,36756087..36756208, 36756943..36757116,36757863..36757994,36758083..36758172, 36758389..36758658,36758756..36759049,36759146..36759346, 36759708..36760179,36760881..36761952)) /locus_tag="TCM_026140" /product="Metalloprotease m41 ftsh, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s04620.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s04620.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10311t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10311t1" mRNA complement(join(36750409..36750490,36750586..36750649, 36750768..36750918,36751030..36751274,36751497..36751577, 36752073..36752180,36752321..36752380,36752714..36752788, 36752909..36753094,36753987..36754106,36754543..36754725, 36755055..36755183,36755474..36755675,36756087..36756208, 36756943..36757116,36757863..36757994,36758083..36758172, 36758389..36758658,36758756..36759049,36759146..36759346, 36759559..36759579,36759708..36760179,36760881..36762247)) /locus_tag="TCM_026140" /product="Metalloprotease m41 ftsh, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s04620.1" /inference="similar to AA sequence:Phytozome:GSVIVT01021791001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10311t1" mRNA complement(join(36750891..36750918,36751080..36751274, 36751497..36751577,36752073..36752180,36752321..36752380, 36752714..36752788,36752909..36753094,36753987..36754106, 36754543..36754725,36755474..36755675,36756087..36756208, 36756943..36757116,36757863..36757994,36758083..36758172, 36758389..36758658,36758756..36759049,36759146..36759346, 36759708..36760179,36760881..36762017)) /locus_tag="TCM_026140" /product="Metalloprotease m41 ftsh, putative isoform 8" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s04620.1" /inference="similar to AA sequence:Phytozome:GSVIVT01021791001" /note="transcript variant 8; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc498t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10311t1" mRNA complement(join(36750891..36750918,36751080..36751274, 36751497..36751577,36752073..36752180,36752321..36752415, 36752714..36752788,36752909..36753094,36753987..36754106, 36754543..36754725,36755055..36755183,36755474..36755675, 36756087..36756208,36756943..36757116,36757863..36757994, 36758083..36758172,36758389..36758658,36758756..36759049, 36759146..36759346,36759708..36760179,36760881..36762017)) /locus_tag="TCM_026140" /product="Metalloprotease m41 ftsh, putative isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s04620.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s04620.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc498t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10311t1" CDS complement(join(36751206..36751274,36751497..36751577, 36752073..36752180,36752321..36752380,36752714..36752788, 36752909..36753094,36753987..36754106,36754543..36754725, 36755474..36755675,36756087..36756208,36756943..36757116, 36757863..36757994,36758083..36758172,36758389..36758658, 36758756..36759049,36759146..36759346,36759708..36760179, 36760881..36761821)) /locus_tag="TCM_026140" /note="encoded by transcript variant 8; alternatively spliced" /codon_start=1 /product="Metalloprotease m41 ftsh, putative isoform 8" /protein_id="EOY10847.1" /db_xref="Phytozome:GSVIVT01021791001" /db_xref="TAIR:AT3G04340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S7N3" /translation="MDSIFTSPCLSQISPPNFRTRHLIRTHKFTKKPLKTLPIKLKFN AFAFRGTPQSSKPVKHQNLILPRRENLEKEAKISSGYFSFQSLVKNLAFTLLCFAIGL SNLSPNGEFKGVAMAAIVEKVAVKGKEEEKEGTFRKDEHEFSDYTRKLLEAVSGLLRK VEEVRNGNGDVNEVGEVLKAVRVKKEELQGEIMRGLYVELRELKREKEELEKRAEEIV DKAVKVGREKGKVVGGRGGKGKGKDVVEKLEEGMERMEEEYSGIWERIGEIEDEILRR ETTALSIGVRELCFIERECEELVQRFNSEMRRKEHFQSTLRGSITNLSRSEIQDELEA AQRKHFEHMILPSVVEVEDLVPFFNEDSVDFALRIRQCLKDSWEMQRNLESRIRRRMK KFGSEKRFVVKTPEDEVVKGFPEAELKWMFGDKEVVVPKAISLHLYHGWKKWREEAKV DLKRHLLEDADFGKHYVAQRQDRILLDRDRVVAKTWYNEERSRWEMDSMAVPYAVSKK LVEHARIRHDWAMMYIALKGDDKEYFVDIKEFDILYENFGGFDGLYMKMLACGIPTAV QLMYIPFSELDFRQQFLLTIRMAHQCLTGLWKTKFVSYGKDWVYQKIRNINDDIMMVI VFPLIESIIPYPVRMQLGMAWPEEIGQTVASTWYLKWQSEAEMSFKSRKTDDLKWFLW FLIRSTIYGFILFHVFRFLRRKVPRVLGYGPIRKDPNIRKLRRVKGYFNYRLRKIKRK KRAGIDPIRTAFDGMKRVKNPPIPLKDFASIESMREEINEVVAFLQNPGAFQEMGARA PRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQQLEAGLWVGQSASNVRELFQTAR DLAPVIIFVEDFDLFAGVRGKFIHTKKQDHEAFINQLLVELDGFEKQDGVVLMATTRN IKQIDEALRRPGRMDRVFHLQRPTQAEREKILRIAAKETMDEELIDLVDWKKTFSGMV PKWVRSTKIVKQVSKMLVNHLGLKLTQEDLQNVVDLMEPYGQISNGIEFLNPPLDWTR ETKFPHAVWAAGRGLIALLLPNFDVVDNLWLEPCSWEGIGCTKITKASNEGSMYANAE SRSYLEKKLVFCFGSHIAAQLLLPFGEENFLSASELKQAQEIATRMVIQYGWGPDDSP AIYYSSNAVTALSMGNNHEFEMATKVEKIYDLAYQKAKEMLKKNRQVLEKIVEELLEF EILTGKDLERILHENGGLREKEPFFLSQVDYREPLSSSFLDEGSASETTFLDVAA" CDS complement(join(36751206..36751274,36751497..36751577, 36752073..36752180,36752321..36752380,36752714..36752788, 36752909..36753094,36753987..36754106,36754543..36754725, 36755055..36755183,36755474..36755675,36756087..36756208, 36756943..36757116,36757863..36757994,36758083..36758172, 36758389..36758658,36758756..36759049,36759146..36759346, 36759708..36760179,36760881..36761821)) /locus_tag="TCM_026140" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Metalloprotease m41 ftsh, putative isoform 2" /protein_id="EOY10841.1" /db_xref="Phytozome:GSVIVT01021791001" /db_xref="TAIR:AT3G04340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S7N3" /translation="MDSIFTSPCLSQISPPNFRTRHLIRTHKFTKKPLKTLPIKLKFN AFAFRGTPQSSKPVKHQNLILPRRENLEKEAKISSGYFSFQSLVKNLAFTLLCFAIGL SNLSPNGEFKGVAMAAIVEKVAVKGKEEEKEGTFRKDEHEFSDYTRKLLEAVSGLLRK VEEVRNGNGDVNEVGEVLKAVRVKKEELQGEIMRGLYVELRELKREKEELEKRAEEIV DKAVKVGREKGKVVGGRGGKGKGKDVVEKLEEGMERMEEEYSGIWERIGEIEDEILRR ETTALSIGVRELCFIERECEELVQRFNSEMRRKEHFQSTLRGSITNLSRSEIQDELEA AQRKHFEHMILPSVVEVEDLVPFFNEDSVDFALRIRQCLKDSWEMQRNLESRIRRRMK KFGSEKRFVVKTPEDEVVKGFPEAELKWMFGDKEVVVPKAISLHLYHGWKKWREEAKV DLKRHLLEDADFGKHYVAQRQDRILLDRDRVVAKTWYNEERSRWEMDSMAVPYAVSKK LVEHARIRHDWAMMYIALKGDDKEYFVDIKEFDILYENFGGFDGLYMKMLACGIPTAV QLMYIPFSELDFRQQFLLTIRMAHQCLTGLWKTKFVSYGKDWVYQKIRNINDDIMMVI VFPLIESIIPYPVRMQLGMAWPEEIGQTVASTWYLKWQSEAEMSFKSRKTDDLKWFLW FLIRSTIYGFILFHVFRFLRRKVPRVLGYGPIRKDPNIRKLRRVKGYFNYRLRKIKRK KRAGIDPIRTAFDGMKRVKNPPIPLKDFASIESMREEINEVVAFLQNPGAFQEMGARA PRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQQLEAGLWVGQSASNVRELFQTAR DLAPVIIFVEDFDLFAGVRGKFIHTKKQDHEAFINQLLVELDGFEKQDGVVLMATTRN IKQIDEALRRPGRMDRVFHLQRPTQAEREKILRIAAKETMDEELIDLVDWKKVAEKTA LLRPIELKLVPVALEGSAFRSKFLDTDELMSYCSWFATFSGMVPKWVRSTKIVKQVSK MLVNHLGLKLTQEDLQNVVDLMEPYGQISNGIEFLNPPLDWTRETKFPHAVWAAGRGL IALLLPNFDVVDNLWLEPCSWEGIGCTKITKASNEGSMYANAESRSYLEKKLVFCFGS HIAAQLLLPFGEENFLSASELKQAQEIATRMVIQYGWGPDDSPAIYYSSNAVTALSMG NNHEFEMATKVEKIYDLAYQKAKEMLKKNRQVLEKIVEELLEFEILTGKDLERILHEN GGLREKEPFFLSQVDYREPLSSSFLDEGSASETTFLDVAA" CDS complement(join(36751206..36751274,36751497..36751577, 36752073..36752180,36752321..36752380,36752714..36752788, 36752909..36753094,36753987..36754106,36754543..36754725, 36755055..36755183,36755474..36755675,36756087..36756208, 36756943..36757116,36757863..36757994,36758083..36758172, 36758389..36758658,36758756..36759049,36759146..36759346, 36759708..36760179,36760881..36761821)) /locus_tag="TCM_026140" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Metalloprotease m41 ftsh, putative isoform 2" /protein_id="EOY10843.1" /db_xref="Phytozome:GSVIVT01021791001" /db_xref="TAIR:AT3G04340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S7N3" /translation="MDSIFTSPCLSQISPPNFRTRHLIRTHKFTKKPLKTLPIKLKFN AFAFRGTPQSSKPVKHQNLILPRRENLEKEAKISSGYFSFQSLVKNLAFTLLCFAIGL SNLSPNGEFKGVAMAAIVEKVAVKGKEEEKEGTFRKDEHEFSDYTRKLLEAVSGLLRK VEEVRNGNGDVNEVGEVLKAVRVKKEELQGEIMRGLYVELRELKREKEELEKRAEEIV DKAVKVGREKGKVVGGRGGKGKGKDVVEKLEEGMERMEEEYSGIWERIGEIEDEILRR ETTALSIGVRELCFIERECEELVQRFNSEMRRKEHFQSTLRGSITNLSRSEIQDELEA AQRKHFEHMILPSVVEVEDLVPFFNEDSVDFALRIRQCLKDSWEMQRNLESRIRRRMK KFGSEKRFVVKTPEDEVVKGFPEAELKWMFGDKEVVVPKAISLHLYHGWKKWREEAKV DLKRHLLEDADFGKHYVAQRQDRILLDRDRVVAKTWYNEERSRWEMDSMAVPYAVSKK LVEHARIRHDWAMMYIALKGDDKEYFVDIKEFDILYENFGGFDGLYMKMLACGIPTAV QLMYIPFSELDFRQQFLLTIRMAHQCLTGLWKTKFVSYGKDWVYQKIRNINDDIMMVI VFPLIESIIPYPVRMQLGMAWPEEIGQTVASTWYLKWQSEAEMSFKSRKTDDLKWFLW FLIRSTIYGFILFHVFRFLRRKVPRVLGYGPIRKDPNIRKLRRVKGYFNYRLRKIKRK KRAGIDPIRTAFDGMKRVKNPPIPLKDFASIESMREEINEVVAFLQNPGAFQEMGARA PRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQQLEAGLWVGQSASNVRELFQTAR DLAPVIIFVEDFDLFAGVRGKFIHTKKQDHEAFINQLLVELDGFEKQDGVVLMATTRN IKQIDEALRRPGRMDRVFHLQRPTQAEREKILRIAAKETMDEELIDLVDWKKVAEKTA LLRPIELKLVPVALEGSAFRSKFLDTDELMSYCSWFATFSGMVPKWVRSTKIVKQVSK MLVNHLGLKLTQEDLQNVVDLMEPYGQISNGIEFLNPPLDWTRETKFPHAVWAAGRGL IALLLPNFDVVDNLWLEPCSWEGIGCTKITKASNEGSMYANAESRSYLEKKLVFCFGS HIAAQLLLPFGEENFLSASELKQAQEIATRMVIQYGWGPDDSPAIYYSSNAVTALSMG NNHEFEMATKVEKIYDLAYQKAKEMLKKNRQVLEKIVEELLEFEILTGKDLERILHEN GGLREKEPFFLSQVDYREPLSSSFLDEGSASETTFLDVAA" CDS complement(join(36751206..36751274,36751497..36751577, 36752073..36752180,36752321..36752380,36752714..36752788, 36752909..36753094,36753987..36754106,36754543..36754725, 36755055..36755183,36755474..36755675,36756087..36756208, 36756943..36757116,36757863..36757994,36758083..36758172, 36758389..36758658,36758756..36759049,36759146..36759346, 36759708..36760179,36760881..36761821)) /locus_tag="TCM_026140" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Metalloprotease m41 ftsh, putative isoform 2" /protein_id="EOY10845.1" /db_xref="Phytozome:GSVIVT01021791001" /db_xref="TAIR:AT3G04340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S7N3" /translation="MDSIFTSPCLSQISPPNFRTRHLIRTHKFTKKPLKTLPIKLKFN AFAFRGTPQSSKPVKHQNLILPRRENLEKEAKISSGYFSFQSLVKNLAFTLLCFAIGL SNLSPNGEFKGVAMAAIVEKVAVKGKEEEKEGTFRKDEHEFSDYTRKLLEAVSGLLRK VEEVRNGNGDVNEVGEVLKAVRVKKEELQGEIMRGLYVELRELKREKEELEKRAEEIV DKAVKVGREKGKVVGGRGGKGKGKDVVEKLEEGMERMEEEYSGIWERIGEIEDEILRR ETTALSIGVRELCFIERECEELVQRFNSEMRRKEHFQSTLRGSITNLSRSEIQDELEA AQRKHFEHMILPSVVEVEDLVPFFNEDSVDFALRIRQCLKDSWEMQRNLESRIRRRMK KFGSEKRFVVKTPEDEVVKGFPEAELKWMFGDKEVVVPKAISLHLYHGWKKWREEAKV DLKRHLLEDADFGKHYVAQRQDRILLDRDRVVAKTWYNEERSRWEMDSMAVPYAVSKK LVEHARIRHDWAMMYIALKGDDKEYFVDIKEFDILYENFGGFDGLYMKMLACGIPTAV QLMYIPFSELDFRQQFLLTIRMAHQCLTGLWKTKFVSYGKDWVYQKIRNINDDIMMVI VFPLIESIIPYPVRMQLGMAWPEEIGQTVASTWYLKWQSEAEMSFKSRKTDDLKWFLW FLIRSTIYGFILFHVFRFLRRKVPRVLGYGPIRKDPNIRKLRRVKGYFNYRLRKIKRK KRAGIDPIRTAFDGMKRVKNPPIPLKDFASIESMREEINEVVAFLQNPGAFQEMGARA PRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQQLEAGLWVGQSASNVRELFQTAR DLAPVIIFVEDFDLFAGVRGKFIHTKKQDHEAFINQLLVELDGFEKQDGVVLMATTRN IKQIDEALRRPGRMDRVFHLQRPTQAEREKILRIAAKETMDEELIDLVDWKKVAEKTA LLRPIELKLVPVALEGSAFRSKFLDTDELMSYCSWFATFSGMVPKWVRSTKIVKQVSK MLVNHLGLKLTQEDLQNVVDLMEPYGQISNGIEFLNPPLDWTRETKFPHAVWAAGRGL IALLLPNFDVVDNLWLEPCSWEGIGCTKITKASNEGSMYANAESRSYLEKKLVFCFGS HIAAQLLLPFGEENFLSASELKQAQEIATRMVIQYGWGPDDSPAIYYSSNAVTALSMG NNHEFEMATKVEKIYDLAYQKAKEMLKKNRQVLEKIVEELLEFEILTGKDLERILHEN GGLREKEPFFLSQVDYREPLSSSFLDEGSASETTFLDVAA" CDS complement(join(36751206..36751274,36751497..36751577, 36752073..36752180,36752321..36752380,36752714..36752788, 36752909..36753094,36753987..36754106,36754543..36754725, 36755055..36755183,36755474..36755675,36756087..36756208, 36756943..36757116,36757863..36757994,36758083..36758172, 36758389..36758658,36758756..36759049,36759146..36759346, 36759559..36759579,36759708..36760179,36760881..36761821)) /locus_tag="TCM_026140" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Metalloprotease m41 ftsh, putative isoform 1" /protein_id="EOY10840.1" /db_xref="Phytozome:GSVIVT01021791001" /db_xref="TAIR:AT3G04340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S7N3" /translation="MDSIFTSPCLSQISPPNFRTRHLIRTHKFTKKPLKTLPIKLKFN AFAFRGTPQSSKPVKHQNLILPRRENLEKEAKISSGYFSFQSLVKNLAFTLLCFAIGL SNLSPNGEFKGVAMAAIVEKVAVKGKEEEKEGTFRKDEHEFSDYTRKLLEAVSGLLRK VEEVRNGNGDVNEVGEVLKAVRVKKEELQGEIMRGLYVELRELKREKEELEKRAEEIV DKAVKVGREKGKVVGGRGGKGKGKDVVEKLEEGMERMEEEYSGIWERIGEIEDEILRR ETTALSIGVRELCFIERECEELVQRFNSEMRRKEHFQSTLRGSITNLSRSEIQDELEA AQRKHFEHMILPSVVEVEDLVPFFNEDSVDFALRIRQCLKDSWEMQRNLESRIRRRMK KFGSEKRFVVKTPEDEVVKGFPEAELKWMFGDKEVVVPKAISLHLYHGWKKWREEAKV DLKRHLLEDADFGKHYVAQRQILKAIDVDRILLDRDRVVAKTWYNEERSRWEMDSMAV PYAVSKKLVEHARIRHDWAMMYIALKGDDKEYFVDIKEFDILYENFGGFDGLYMKMLA CGIPTAVQLMYIPFSELDFRQQFLLTIRMAHQCLTGLWKTKFVSYGKDWVYQKIRNIN DDIMMVIVFPLIESIIPYPVRMQLGMAWPEEIGQTVASTWYLKWQSEAEMSFKSRKTD DLKWFLWFLIRSTIYGFILFHVFRFLRRKVPRVLGYGPIRKDPNIRKLRRVKGYFNYR LRKIKRKKRAGIDPIRTAFDGMKRVKNPPIPLKDFASIESMREEINEVVAFLQNPGAF QEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQQLEAGLWVGQSASNVR ELFQTARDLAPVIIFVEDFDLFAGVRGKFIHTKKQDHEAFINQLLVELDGFEKQDGVV LMATTRNIKQIDEALRRPGRMDRVFHLQRPTQAEREKILRIAAKETMDEELIDLVDWK KVAEKTALLRPIELKLVPVALEGSAFRSKFLDTDELMSYCSWFATFSGMVPKWVRSTK IVKQVSKMLVNHLGLKLTQEDLQNVVDLMEPYGQISNGIEFLNPPLDWTRETKFPHAV WAAGRGLIALLLPNFDVVDNLWLEPCSWEGIGCTKITKASNEGSMYANAESRSYLEKK LVFCFGSHIAAQLLLPFGEENFLSASELKQAQEIATRMVIQYGWGPDDSPAIYYSSNA VTALSMGNNHEFEMATKVEKIYDLAYQKAKEMLKKNRQVLEKIVEELLEFEILTGKDL ERILHENGGLREKEPFFLSQVDYREPLSSSFLDEGSASETTFLDVAA" CDS complement(join(36751220..36751274,36751497..36751579, 36752073..36752180,36752321..36752380,36752714..36752788, 36752909..36753094,36753987..36754106,36754543..36754725, 36755055..36755183,36755474..36755675,36756087..36756208, 36756943..36757116,36757863..36757994,36758083..36758172, 36758389..36758658,36758756..36759049,36759146..36759346, 36759708..36760179,36760881..36761821)) /locus_tag="TCM_026140" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Metalloprotease m41 ftsh, putative isoform 3" /protein_id="EOY10842.1" /db_xref="Phytozome:POPTR_0013s04620.1" /db_xref="TAIR:AT3G04340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S7N3" /translation="MDSIFTSPCLSQISPPNFRTRHLIRTHKFTKKPLKTLPIKLKFN AFAFRGTPQSSKPVKHQNLILPRRENLEKEAKISSGYFSFQSLVKNLAFTLLCFAIGL SNLSPNGEFKGVAMAAIVEKVAVKGKEEEKEGTFRKDEHEFSDYTRKLLEAVSGLLRK VEEVRNGNGDVNEVGEVLKAVRVKKEELQGEIMRGLYVELRELKREKEELEKRAEEIV DKAVKVGREKGKVVGGRGGKGKGKDVVEKLEEGMERMEEEYSGIWERIGEIEDEILRR ETTALSIGVRELCFIERECEELVQRFNSEMRRKEHFQSTLRGSITNLSRSEIQDELEA AQRKHFEHMILPSVVEVEDLVPFFNEDSVDFALRIRQCLKDSWEMQRNLESRIRRRMK KFGSEKRFVVKTPEDEVVKGFPEAELKWMFGDKEVVVPKAISLHLYHGWKKWREEAKV DLKRHLLEDADFGKHYVAQRQDRILLDRDRVVAKTWYNEERSRWEMDSMAVPYAVSKK LVEHARIRHDWAMMYIALKGDDKEYFVDIKEFDILYENFGGFDGLYMKMLACGIPTAV QLMYIPFSELDFRQQFLLTIRMAHQCLTGLWKTKFVSYGKDWVYQKIRNINDDIMMVI VFPLIESIIPYPVRMQLGMAWPEEIGQTVASTWYLKWQSEAEMSFKSRKTDDLKWFLW FLIRSTIYGFILFHVFRFLRRKVPRVLGYGPIRKDPNIRKLRRVKGYFNYRLRKIKRK KRAGIDPIRTAFDGMKRVKNPPIPLKDFASIESMREEINEVVAFLQNPGAFQEMGARA PRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQQLEAGLWVGQSASNVRELFQTAR DLAPVIIFVEDFDLFAGVRGKFIHTKKQDHEAFINQLLVELDGFEKQDGVVLMATTRN IKQIDEALRRPGRMDRVFHLQRPTQAEREKILRIAAKETMDEELIDLVDWKKVAEKTA LLRPIELKLVPVALEGSAFRSKFLDTDELMSYCSWFATFSGMVPKWVRSTKIVKQVSK MLVNHLGLKLTQEDLQNVVDLMEPYGQISNGIEFLNPPLDWTRETKFPHAVWAAGRGL IALLLPNFDVVDNLWLEPCSWEGIGCTKITKASNEGSMYANAESRSYLEKKLVFCFGS HIAAQLLLPFGEENFLSASELKQAQEIATRMVIQYGWGPDDSPAIYYSSNAVTALSMG NNHEFEMATKVEKIYDLAYQKAKEMLKKNRQVLEKIVEELLEFEILTGKRIWRESFMK MGGFERKSLFSYHKLIIESHCLAAFLMKGVHQKLHF" CDS complement(join(36752368..36752415,36752714..36752788, 36752909..36753094,36753987..36754106,36754543..36754725, 36755055..36755183,36755474..36755675,36756087..36756208, 36756943..36757116,36757863..36757994,36758083..36758172, 36758389..36758658,36758756..36759049,36759146..36759346, 36759708..36760179,36760881..36761821)) /locus_tag="TCM_026140" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Metalloprotease m41 ftsh, putative isoform 5" /protein_id="EOY10844.1" /db_xref="Phytozome:POPTR_0013s04620.1" /db_xref="TAIR:AT3G04340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S7N3" /translation="MDSIFTSPCLSQISPPNFRTRHLIRTHKFTKKPLKTLPIKLKFN AFAFRGTPQSSKPVKHQNLILPRRENLEKEAKISSGYFSFQSLVKNLAFTLLCFAIGL SNLSPNGEFKGVAMAAIVEKVAVKGKEEEKEGTFRKDEHEFSDYTRKLLEAVSGLLRK VEEVRNGNGDVNEVGEVLKAVRVKKEELQGEIMRGLYVELRELKREKEELEKRAEEIV DKAVKVGREKGKVVGGRGGKGKGKDVVEKLEEGMERMEEEYSGIWERIGEIEDEILRR ETTALSIGVRELCFIERECEELVQRFNSEMRRKEHFQSTLRGSITNLSRSEIQDELEA AQRKHFEHMILPSVVEVEDLVPFFNEDSVDFALRIRQCLKDSWEMQRNLESRIRRRMK KFGSEKRFVVKTPEDEVVKGFPEAELKWMFGDKEVVVPKAISLHLYHGWKKWREEAKV DLKRHLLEDADFGKHYVAQRQDRILLDRDRVVAKTWYNEERSRWEMDSMAVPYAVSKK LVEHARIRHDWAMMYIALKGDDKEYFVDIKEFDILYENFGGFDGLYMKMLACGIPTAV QLMYIPFSELDFRQQFLLTIRMAHQCLTGLWKTKFVSYGKDWVYQKIRNINDDIMMVI VFPLIESIIPYPVRMQLGMAWPEEIGQTVASTWYLKWQSEAEMSFKSRKTDDLKWFLW FLIRSTIYGFILFHVFRFLRRKVPRVLGYGPIRKDPNIRKLRRVKGYFNYRLRKIKRK KRAGIDPIRTAFDGMKRVKNPPIPLKDFASIESMREEINEVVAFLQNPGAFQEMGARA PRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQQLEAGLWVGQSASNVRELFQTAR DLAPVIIFVEDFDLFAGVRGKFIHTKKQDHEAFINQLLVELDGFEKQDGVVLMATTRN IKQIDEALRRPGRMDRVFHLQRPTQAEREKILRIAAKETMDEELIDLVDWKKVAEKTA LLRPIELKLVPVALEGSAFRSKFLDTDELMSYCSWFATFSGMVPKWVRSTKIVKQVSK MLVNHLGLKLTQEDLQNVVDLMEPYGQISNGIEFLNPPLDWTRETKFPHAVWAAGRGL IALLLPNFDVVDNLWLEPCSWEGIGCTKITKASNEGSMYANAESRSYLEKKLVFCFGS HIAAQLLLPFGEENFLSASELKQAQEIATRMVIQYGWGPDDSPAIYYSSNAIVHVGIF LHCYRSQL" CDS complement(join(36752785..36752790,36752909..36753094, 36753987..36754106,36754543..36754725,36755474..36755675, 36756087..36756208,36756943..36757116,36757863..36757994, 36758083..36758172,36758389..36758658,36758756..36759049, 36759146..36759346,36759708..36760179,36760881..36761821)) /locus_tag="TCM_026140" /note="encoded by transcript variant 7; alternatively spliced" /codon_start=1 /product="Metalloprotease m41 ftsh, putative isoform 7" /protein_id="EOY10846.1" /db_xref="Phytozome:POPTR_0013s04620.1" /db_xref="TAIR:AT3G04340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S7N3" /translation="MDSIFTSPCLSQISPPNFRTRHLIRTHKFTKKPLKTLPIKLKFN AFAFRGTPQSSKPVKHQNLILPRRENLEKEAKISSGYFSFQSLVKNLAFTLLCFAIGL SNLSPNGEFKGVAMAAIVEKVAVKGKEEEKEGTFRKDEHEFSDYTRKLLEAVSGLLRK VEEVRNGNGDVNEVGEVLKAVRVKKEELQGEIMRGLYVELRELKREKEELEKRAEEIV DKAVKVGREKGKVVGGRGGKGKGKDVVEKLEEGMERMEEEYSGIWERIGEIEDEILRR ETTALSIGVRELCFIERECEELVQRFNSEMRRKEHFQSTLRGSITNLSRSEIQDELEA AQRKHFEHMILPSVVEVEDLVPFFNEDSVDFALRIRQCLKDSWEMQRNLESRIRRRMK KFGSEKRFVVKTPEDEVVKGFPEAELKWMFGDKEVVVPKAISLHLYHGWKKWREEAKV DLKRHLLEDADFGKHYVAQRQDRILLDRDRVVAKTWYNEERSRWEMDSMAVPYAVSKK LVEHARIRHDWAMMYIALKGDDKEYFVDIKEFDILYENFGGFDGLYMKMLACGIPTAV QLMYIPFSELDFRQQFLLTIRMAHQCLTGLWKTKFVSYGKDWVYQKIRNINDDIMMVI VFPLIESIIPYPVRMQLGMAWPEEIGQTVASTWYLKWQSEAEMSFKSRKTDDLKWFLW FLIRSTIYGFILFHVFRFLRRKVPRVLGYGPIRKDPNIRKLRRVKGYFNYRLRKIKRK KRAGIDPIRTAFDGMKRVKNPPIPLKDFASIESMREEINEVVAFLQNPGAFQEMGARA PRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQQLEAGLWVGQSASNVRELFQTAR DLAPVIIFVEDFDLFAGVRGKFIHTKKQDHEAFINQLLVELDGFEKQDGVVLMATTRN IKQIDEALRRPGRMDRVFHLQRPTQAEREKILRIAAKETMDEELIDLVDWKKTFSGMV PKWVRSTKIVKQVSKMLVNHLGLKLTQEDLQNVVDLMEPYGQISNGIEFLNPPLDWTR ETKFPHAVWAAGRGLIALLLPNFDVVDNLWLEPCSWEGIGCTKITKASNEGSMYANAE SRSYLEKKLVFCFGSHIAAQLLLPFGEENFLSASELKQAQER" gene 36763629..36788336 /locus_tag="TCM_026141" /note="dbxref CacaoGD:Thecc1EG026141" mRNA join(36763629..36764222,36766697..36766819, 36770733..36770900,36771073..36771135,36771552..36771647, 36771728..36771820,36772474..36772664,36776677..36776923, 36777090..36777203,36777715..36777815,36777964..36778036, 36778139..36778159,36779354..36779920,36780063..36780352, 36780626..36780716,36780798..36781007,36781397..36781516, 36781723..36781889,36782556..36782697,36783187..36783336, 36783417..36783472,36783559..36783859,36784904..36785027, 36785873..36785934,36786073..36786299,36786625..36786828, 36786918..36786996,36787072..36787331,36787596..36788336) /locus_tag="TCM_026141" /product="Chromatin remodeling complex subunit isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01023393001" /inference="similar to AA sequence:ricco:29680.m001719" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1336t4" mRNA join(36764132..36764222,36766697..36766819, 36770733..36770900,36771073..36771135,36771552..36771647, 36771728..36771820,36772474..36772664,36776677..36776923, 36777090..36777203,36777715..36777798,36779354..36779920, 36780063..36780352,36780626..36780716,36780798..36781007, 36781397..36781516,36781723..36781889,36782556..36782697, 36783187..36783336,36783417..36783472,36783559..36783859, 36784904..36785027,36786625..36786828,36786918..36786996, 36787072..36787331,36787596..36788301) /locus_tag="TCM_026141" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01023393001" /inference="similar to AA sequence:Phytozome:GSVIVT01023393001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1175t4_C1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1336t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10431t1" mRNA join(36766798..36766819,36770733..36770900, 36771073..36771135,36771552..36771647,36771728..36771820, 36772474..36772664,36776677..36776923,36777090..36777203, 36777715..36777798,36779354..36779920,36780063..36780352, 36780626..36780716,36780798..36781007,36781397..36781516, 36781723..36781889,36782556..36782697,36783187..36783336, 36783417..36783472,36783559..36783859,36784904..36785027, 36785625..36785678,36785873..36785898) /locus_tag="TCM_026141" /product="Chromatin remodeling complex subunit isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01023393001" /inference="similar to AA sequence:Phytozome:GSVIVT01023393001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1336t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1336t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10431t1" mobile_element complement(36769045..36770180) /note="source:CACAO_hAT_E2876_scaffold_6 1 1136" /mobile_element_type="transposon:TIR/hAT" CDS join(36770778..36770900,36771073..36771135, 36771552..36771647,36771728..36771820,36772474..36772664, 36776677..36776923,36777090..36777203,36777715..36777815, 36777964..36778036,36778139..36778159,36779354..36779920, 36780063..36780352,36780626..36780716,36780798..36781007, 36781397..36781516,36781723..36781889,36782556..36782697, 36783187..36783336,36783417..36783472,36783559..36783859, 36784904..36785027,36785873..36785934,36786073..36786299, 36786625..36786828,36786918..36786996,36787072..36787331, 36787596..36787989) /locus_tag="TCM_026141" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29680.m001719" /codon_start=1 /product="Chromatin remodeling complex subunit isoform 1" /protein_id="EOY10848.1" /db_xref="TAIR:AT1G08600.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5Q4" /translation="MMKEKHEEVEDVASASSDSFILDSDGDEPSTSGQDDGLHLEESL TEQEIEELISEFLEVESKAAEAQETLEKESLAKVETEVREELAQTLQGDDLDTAVADE MATFIEQWEGVLDELETESAQLLEQLDGAGIELPSLYKWIESQVPNGCSTEAWKRRAH WVGSQVTSEIVESVADAEKHLQTQRPVRRKHGRLLEEGASGFLQKKLSSDASQEAVTE NSDIDWSSFMKICSDGLTKDGTRFGSKNWASVYLASTPQQAALMGLKFPGVNEVEEIE DIDGSTANPLVADAIENEGDLILSDEQRKNFRKVNEEDDANIDRKFHLHLKRRRHQRR SKQVLCLITFLSYGYLTSVRAKNIELIVVATNKNSRKDLKVMESNLDRSKPLEDDSNS ISNKENQEDREGVPNSENGVTCQNLKTDVPESFESCKLDRTWSISDGMSLGHVESDMS DSGKPRGSKRSNEDKEGNGDNKKARTFIIASDDEADTTMKDELVSSKLEDRSTLLEKS DDAVGVESNSSERLTEKFSCTACHKLATEVLQHPLLKVIICMDCKCLLEEKMHTKDAD CSEGYCGWCGQGNDLISCKSCKTLFCTKCIRRNIGEECLLEAQASGWQCCFCLPSLLQ KLTSELERAMGCRDTMVSSSDSESENSDADINTAISSKRKRKKKIRRILDDAELGEET KRKIAIEKERQERLKSMQFSAKYNMINSPSCNRNLSDEASVEVLGDAITGYIVNVRRE DGEEAVRIPQSISAKLKVHQIAGIRFLWENIIQSITKVRSGDRGLGCILAHTMGLGKT FQVIAFLYTAMRGVDLGLKTALIVTPVNVLHNWRQEFMKWRPSEVKPLRVFMLEDVPR ERRAELFARWKAKGGVFLIGYSAFRNLSLGKHVKDRHMAREICLGLQDGPDILVCDEA HTIKNTKADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNR FQNPIENGQHTNSTHEDVKIMNQRSHILYEQLKGFVQRMDMSVVKKDLPPKTVFVIAV KLSPLQRKLYKRFLDVHGFTNDSSSNEKIRKSFFAGYQALAQIWNHPGILQFKEDRGY ITREDAAEADDSSSDENIDYNVTVGEKTRNVNDSLHEKSDYGFIQKGWWKDLLHENNY KELDYSGKMVLLLDIITMCSDVGDKALVFSQSIPTLDLIELYLSRLTRRGKNGKCWKK GKDWYRLDGRTESSERQKLVEKFNAPMNKRVKCTLISTRAGSLGINLYAANRVIIVDG SWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQV HRTISKEEMLHLFEFGDDENFDTLMELSEENGNQNLTCEVGKSLKQKMPLSHGSCSSD KLMESLLGKHHPRWIANYHEHETLLQENEDEKLSKEEQDMAWEVYRKTIEWEEVQRVS VDESAAERKPAVSDVSPPKPEPEPIHLTQPRGIFRSRIVQRKCTNLAHLLTLRSQGTK MGCSTVCGECGQEISWEDLNRDGKTAR" CDS join(36770778..36770900,36771073..36771135, 36771552..36771647,36771728..36771820,36772474..36772664, 36776677..36776923,36777090..36777203,36777715..36777798, 36779354..36779920,36780063..36780352,36780626..36780716, 36780798..36781007,36781397..36781516,36781723..36781889, 36782556..36782697,36783187..36783336,36783417..36783472, 36783559..36783859,36784904..36785027,36786625..36786689) /locus_tag="TCM_026141" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /protein_id="EOY10849.1" /db_xref="Phytozome:GSVIVT01023393001" /db_xref="TAIR:AT1G08600.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5Q4" /translation="MMKEKHEEVEDVASASSDSFILDSDGDEPSTSGQDDGLHLEESL TEQEIEELISEFLEVESKAAEAQETLEKESLAKVETEVREELAQTLQGDDLDTAVADE MATFIEQWEGVLDELETESAQLLEQLDGAGIELPSLYKWIESQVPNGCSTEAWKRRAH WVGSQVTSEIVESVADAEKHLQTQRPVRRKHGRLLEEGASGFLQKKLSSDASQEAVTE NSDIDWSSFMKICSDGLTKDGTRFGSKNWASVYLASTPQQAALMGLKFPGVNEVEEIE DIDGSTANPLVADAIENEGDLILSDEQRKNFRKVNEEDDANIDRKFHLHLKRRRHQRR SKQVMESNLDRSKPLEDDSNSISNKENQEDREGVPNSENGVTCQNLKTDVPESFESCK LDRTWSISDGMSLGHVESDMSDSGKPRGSKRSNEDKEGNGDNKKARTFIIASDDEADT TMKDELVSSKLEDRSTLLEKSDDAVGVESNSSERLTEKFSCTACHKLATEVLQHPLLK VIICMDCKCLLEEKMHTKDADCSEGYCGWCGQGNDLISCKSCKTLFCTKCIRRNIGEE CLLEAQASGWQCCFCLPSLLQKLTSELERAMGCRDTMVSSSDSESENSDADINTAISS KRKRKKKIRRILDDAELGEETKRKIAIEKERQERLKSMQFSAKYNMINSPSCNRNLSD EASVEVLGDAITGYIVNVRREDGEEAVRIPQSISAKLKVHQIAGIRFLWENIIQSITK VRSGDRGLGCILAHTMGLGKTFQVIAFLYTAMRGVDLGLKTALIVTPVNVLHNWRQEF MKWRPSEVKPLRVFMLEDVPRERRAELFARWKAKGGVFLIGYSAFRNLSLGKHVKDRH MAREICLGLQDGPDILVCDEAHTIKNTKADTTQALKQVKCQRRIALTGSPLQNNLMEY YCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTHEDVKIMNQRSHILYEQLKGFVQ RMDMSVVKKDLPPKTVFVIAVKLSPLQRKLYKRFLDVHGFTNDSSSNEKIRKSFFAGY QALAQIWNHPGILQFKEDRGYITREDAAEADDSSSDENIDYNVTVGGWMEGQKVLNGK SWLRSLMHQ" CDS join(36770778..36770900,36771073..36771135, 36771552..36771647,36771728..36771820,36772474..36772664, 36776677..36776923,36777090..36777203,36777715..36777798, 36779354..36779920,36780063..36780352,36780626..36780716, 36780798..36781007,36781397..36781516,36781723..36781889, 36782556..36782697,36783187..36783336,36783417..36783472, 36783559..36783859,36784904..36785027,36785625..36785674) /locus_tag="TCM_026141" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Chromatin remodeling complex subunit isoform 3" /protein_id="EOY10850.1" /db_xref="Phytozome:GSVIVT01023393001" /db_xref="TAIR:AT1G08600.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5Q4" /translation="MMKEKHEEVEDVASASSDSFILDSDGDEPSTSGQDDGLHLEESL TEQEIEELISEFLEVESKAAEAQETLEKESLAKVETEVREELAQTLQGDDLDTAVADE MATFIEQWEGVLDELETESAQLLEQLDGAGIELPSLYKWIESQVPNGCSTEAWKRRAH WVGSQVTSEIVESVADAEKHLQTQRPVRRKHGRLLEEGASGFLQKKLSSDASQEAVTE NSDIDWSSFMKICSDGLTKDGTRFGSKNWASVYLASTPQQAALMGLKFPGVNEVEEIE DIDGSTANPLVADAIENEGDLILSDEQRKNFRKVNEEDDANIDRKFHLHLKRRRHQRR SKQVMESNLDRSKPLEDDSNSISNKENQEDREGVPNSENGVTCQNLKTDVPESFESCK LDRTWSISDGMSLGHVESDMSDSGKPRGSKRSNEDKEGNGDNKKARTFIIASDDEADT TMKDELVSSKLEDRSTLLEKSDDAVGVESNSSERLTEKFSCTACHKLATEVLQHPLLK VIICMDCKCLLEEKMHTKDADCSEGYCGWCGQGNDLISCKSCKTLFCTKCIRRNIGEE CLLEAQASGWQCCFCLPSLLQKLTSELERAMGCRDTMVSSSDSESENSDADINTAISS KRKRKKKIRRILDDAELGEETKRKIAIEKERQERLKSMQFSAKYNMINSPSCNRNLSD EASVEVLGDAITGYIVNVRREDGEEAVRIPQSISAKLKVHQIAGIRFLWENIIQSITK VRSGDRGLGCILAHTMGLGKTFQVIAFLYTAMRGVDLGLKTALIVTPVNVLHNWRQEF MKWRPSEVKPLRVFMLEDVPRERRAELFARWKAKGGVFLIGYSAFRNLSLGKHVKDRH MAREICLGLQDGPDILVCDEAHTIKNTKADTTQALKQVKCQRRIALTGSPLQNNLMEY YCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTHEDVKIMNQRSHILYEQLKGFVQ RMDMSVVKKDLPPKTVFVIAVKLSPLQRKLYKRFLDVHGFTNDSSSNEKIRKSFFAGY QALAQIWNHPGILQFKEDRGYITREDAAEADDSSSDENIDYNVTVGEGEKKENITSQA RIAS" mobile_element complement(36772776..36773003) /note="source:INTACT119_F1_scaffold_7-int 138 363" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(36773014..36773606) /note="source:CACAO_M_E947_F1_scaffold_1 4396 4988" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 36773599..36776243 /note="source:INTACT270_F1_scaffold_1-int 426 5387" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(36788383..36792487) /locus_tag="TCM_026143" /note="dbxref CacaoGD:Thecc1EG026143" mRNA complement(join(36788383..36790737,36792123..36792487)) /locus_tag="TCM_026143" /product="Vacuolar protein sorting-associated protein 62" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s04580.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003907t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s04580.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc656t10" CDS complement(join(36789146..36790737,36792123..36792333)) /locus_tag="TCM_026143" /note="paralog of Thecc1EG003907t1" /codon_start=1 /product="Vacuolar protein sorting-associated protein 62" /protein_id="EOY10851.1" /db_xref="Phytozome:POPTR_0013s04580.1" /db_xref="TAIR:AT3G04350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O64496" /translation="MKRKLKRVEKGDLSEDNLWGFGGFLRLLKFCMVKMLGCECFCWH RGGGEELPLPRPQPFSLPSPIPEWPPGQGFATGKINLGELEVVQITKFESVWSCNLLR GKSKGVTFYKPVGIPDGFFCLGHYCQPNDQPLRGYVLVACERVASSTEVYCDYDSDSD LPALTKPVNYSLIWSTDAHGNGCGFFWLPNPPVGYKAMGVLVTDTPEEPNVEEVRCVR DDLTETCEISDTILASASNPFQVWNTRPCRRGMFCKGVSVGTFFCSTYFVSEEEELEI SCLKNLDPTLHAMPNLNQIHALIKHYGATVFFHSDEDCMPSSVQWFFKNGALLYEYGN LKGEPIDCWGSNLPSGGTNDGTFWIDLPADDYARNYVKKGNLESAELYVHVKPALGGT FTDIVMWIFCPFNGPANLKIGLMSIQMNKIGEHVSDWEHFTLRISNFTGELWQGYFSQ HSGGEWVDAFNLEFIEGNKPIVYSSKHGHASFPHPGTYLQGSVKLGIGIRNDAARSKY YVDSSTRYQIIAAEYLGDGVVTEPCWLDYMREWGPTIVYDSRSELDKIINLLPLFVRF SVENIFDLFPTELYGEEGPTGPKEKDNWVGDERW" gene complement(36796822..36797867) /locus_tag="TCM_026144" /note="dbxref CacaoGD:Thecc1EG026144" mRNA complement(36796822..36797867) /locus_tag="TCM_026144" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s04590.1" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01673t00001_C1" CDS complement(36797123..36797653) /locus_tag="TCM_026144" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10852.1" /translation="MQRIETMRQVEAYNYKAKRLPKHLDKGNQNLAFVSLYTFSFSTT FSLFMANNFLERKPFKPPFEIIERKTKTINIKYKDCMRNHAPQLGVNVVDGCGEFTPK GRTSETRNGNLDCEACGCHRNFHRKEATKKISLTFIENEQVNWFRFHSRPFEMNNEQK QTENEEMNERIKKPKN" gene complement(36797955..36800257) /locus_tag="TCM_026145" /note="dbxref CacaoGD:Thecc1EG026145" mRNA complement(36797955..36800257) /locus_tag="TCM_026145" /product="Calcium-dependent lipid-binding (CaLB domain) family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s04590.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG008473t1" /inference="similar to AA sequence:ricco:29680.m001714" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.41 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2018t1" CDS complement(36798656..36799768) /locus_tag="TCM_026145" /note="dbxref ricco:29680.m001714; paralog of Thecc1EG008473t1" /codon_start=1 /product="Calcium-dependent lipid-binding (CaLB domain) family protein" /protein_id="EOY10853.1" /db_xref="TAIR:AT3G04360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5Q2" /translation="MAPPPTHSRILEINLISAEDLAPVSKNMKTYAVAWVQPDHKLAT GIDQTGRTDPSWNEKFMFRLDDKFLNSEDAAIVVEIYAAAWVKDVLIGYVNVLIKDIF HLRSIADAKINYSATRTVTLQIRRPSGRPQGILNMEVILLDSTTPSVPELGDPKPKTT SKNEESFENNNELESHKSSPNAKISRSQSDVTDSTMEDNLEKRPQMGSIVNDGSGSEA KGYGSMVNGGSICSSDVGPSASIVAAAIAKGLYKPPIQHQAQTKETGLIREWTRKREE SLDKKLEKWRSEMSQPASAGKQKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXLPDFTQLYF" gene 36801022..36802337 /locus_tag="TCM_026146" /note="dbxref CacaoGD:Thecc1EG026146" mRNA join(36801022..36801906,36801984..36802337) /locus_tag="TCM_026146" /product="Plasmodesmata-located protein 2, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s04570.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020988t2" /inference="similar to AA sequence:ricco:29680.m001713" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS join(36801150..36801906,36801984..36802120) /locus_tag="TCM_026146" /note="dbxref ricco:29680.m001713; paralog of Thecc1EG020988t2" /codon_start=1 /product="Plasmodesmata-located protein 2, putative" /protein_id="EOY10854.1" /db_xref="TAIR:AT1G04520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5Q0" /translation="MGSTLKPMSLLPQTLILVTFSKIIILLNAETISDYSTLIYKNCT SQTFADSTNSHSESLSSFFQELITKSSQEKFHKTTTGDDNTGISGLFQCRGDLSNNEC YKCITSLPEMCNTLCNEAVSARIQLHGCYVHYEADVFMEESSQYELLHKICGAKKAEA LGFEEVRDAAFAAVESGVTDGDGYCKENYELLQVIAQCEGDLRPCDCGKCVSIATQIA QEECGSSLSGHIYLDNCFVSYAYYPDGIPDNLNQGREGRNNTGKLLAIVLGGAAALFI GYIFLLSLKKLGKKDDGMYKS" mobile_element complement(36805899..36805981) /note="source:CACAO_M_S_E50926_F158_scaffold_4 2855 2933" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(36805970..36807853) /note="source:INTACT764_F80_scaffold_4-int 1045 2928" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(36812066..36813115) /note="source:CACAO_M_E3144_F80_scaffold_1 1 1050" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 36812282..36822742 /locus_tag="TCM_026148" /note="dbxref CacaoGD:Thecc1EG026148" mRNA join(36812282..36812764,36818126..36818394, 36818685..36819449,36820245..36820510,36821307..36821373, 36821541..36821591,36821973..36822066,36822631..36822742) /locus_tag="TCM_026148" /product="Set domain protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01023397001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003925t2" /inference="similar to AA sequence:Phytozome:Glyma10g30830.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10223t1" mobile_element 36813123..36816037 /note="source:CACAO_M_S_E144143_F7_scaffold_10 73 3010" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(36818212..36818394,36818685..36819449, 36820245..36820510,36821307..36821373,36821541..36821591, 36821973..36822066,36822631..36822656) /locus_tag="TCM_026148" /note="paralog of Thecc1EG003925t2" /codon_start=1 /product="Set domain protein, putative" /protein_id="EOY10855.1" /db_xref="Phytozome:Glyma10g30830.1" /db_xref="TAIR:AT3G04380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S7M5" /translation="MATNERVRRAINATGALGIPEQEVKPVLEHLLRLFDENWELIES EDYRALIDAYFELKEDKGVQDKENVVVEHGGSSRLSKRLRSQEPEDQASSTKGNSSQI LSPEENQKPMVNLREGVTFLKKKDSISSGCSNSCNKVQQQSVTCERKRPFRIISDITK GTENVKISLVDEIGHQDLPKFTYMPGNVIYQDAYVHISLARIADEHCCSGCSGDCLSL PIPCACAHETGGEFAYTPEGKLREEFLQACMSMKQEPQEHHFVYCQDCPLERSKNEHK PDKCNGHLVRKFIKECWRKCGCHIRCGNRVVQRGIACKLQVFLTGEGKGWGVKTLQDL PKGTFVCEYIGEILTNTELDERNMKSSGRERHTYPVTLDADWGSERILKDEEALCLDA TFCGNVARFINHRCFDANLIDIPVEVETPDRHYYHLALFTTRDVRASEELTWDYGIDF DDHEHPIKAFQCHCGSAFCRDVKQKRTRLAMHR" gene 36825277..36827435 /locus_tag="TCM_026150" /note="dbxref CacaoGD:Thecc1EG026150" mRNA join(36825277..36825531,36825614..36825748, 36825847..36825987,36826598..36827435) /locus_tag="TCM_026150" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.27 coverage" CDS join(36825400..36825531,36825614..36825748, 36825847..36825987,36826598..36826900) /locus_tag="TCM_026150" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10856.1" /translation="MSATVTILLILRRKYVDACVSHAMLVVLNVLLKARMARSTAVCN DLVVEDDTGEYYCDICEEKRNPEHHVYYCEQCTYIAHIKCVLIIEEETSSAEDISHLV CKSGESCGNMDSKALLENITEQKAEQQSEFPAPQVRPIVALIVILFSMNLVLDYQKRY NVHFIRYTNWRLHKAEISLFNAIFVVVFFAQVTLAIVVSFILTSTSIINALYPQEGPS NRVPTSMIFTIVGKMAAV" gene complement(36827524..36828837) /locus_tag="TCM_026151" /note="dbxref CacaoGD:Thecc1EG026151" mRNA complement(join(36827524..36828465,36828724..36828837)) /locus_tag="TCM_026151" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.36 coverage" CDS complement(36827759..36827968) /locus_tag="TCM_026151" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10857.1" /translation="MPLRFECATMQGFLPINIMWEANTTADGLALRLECRGSPTSKLL LKPQQGRTSLNFSLVILLFLAPPVC" gene 36829931..36833423 /locus_tag="TCM_026152" /note="dbxref CacaoGD:Thecc1EG026152" mRNA join(36829931..36831268,36831359..36831550, 36831663..36832745,36833011..36833423) /locus_tag="TCM_026152" /product="Cysteine/Histidine-rich C1 domain family protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT2G21850.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026341t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s03690.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc5213t1" CDS join(36830135..36831268,36831359..36831550, 36831663..36832745,36833011..36833148) /locus_tag="TCM_026152" /note="paralog of Thecc1EG026341t1" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein, putative" /protein_id="EOY10858.1" /db_xref="Phytozome:POPTR_0019s03690.1" /db_xref="TAIR:AT2G21840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPB2" /translation="METEPFLHKHFLCYDLYKKQEACCYKCSQQIDGRAYSCENCKFW LHKSCAEQELPPQLSHPLHPQHHLSLFCDDSEKFVCDQCFYISGGYRYSCKGCSFNLD LNCASSTKGQLHQEDYGQGSKIRQRKRIHHFSHEHPLDLFNYRKIGKTEIRCSWCEKT LSAGSGMSWGCLELCKNATFFHQSCFSKIPKRVQHPFHPSHSLGLQYKNYSSTCNACK GELEDYPCQNYYCNKCNFWLHVFCIRLLPTMKHNCHEHDLTYFIVKNKEDFKCNLCDG NCNAAAERSILKPSSWFYGKSDCAFYRCVQCDLNFHLNCIPIPRTTKHRYHTHSLILK DSFKEDDSGESYCDICEKERNSENHVYYCEKCTYIAHIECAINEENSKELLPPRHQFI DMKLDLGKTSGMAVEQEEMEQVETRQSHVEYPALSEPTETNGSIHNGQFKRQIQHFTH HHPLSFLEIIEKHACCDACKMGILGPAYVCESDEYYLHQTCAELFQDMQHPLHSQHPL KLLTTCPTDQGRFICDECGDISKGFVYFCWECEFKLDLKCAAPTTSQNEGQRLKQTKR DSKKSHFSHEHMLVFTNCRPYFKKFQCNGCNLPIVGAAFCCLACSYILHESCLALPKQ MKFQFHPEHPLVAKLTQFFEIFNRCHAYGTGFRWTNIRYSCSECSLDLHFSCANSLKR PLKHKSHIHNLYYFGTESQKLFENENISFSCNTCSKTCVGPSYRCLECAINFHLECIP IPQRVKSDCHIHPFTLVDSFVEDDSGEYYCDVCEEERHSKDHIYFCEECNGLFVAHIE CALAKVEEPAPEIEACSTMEPDLKKTSIQVESKTSLGRETEEMESREEQR" gene 36837632..36841940 /locus_tag="TCM_026153" /note="dbxref CacaoGD:Thecc1EG026153" mRNA join(36837632..36839273,36839362..36839481, 36839887..36840993,36841553..36841940) /locus_tag="TCM_026153" /product="Cysteine/Histidine-rich C1 domain family protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT2G21850.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026164t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s03690.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.17 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10243t2" CDS join(36838176..36839273,36839362..36839481, 36839887..36840993,36841553..36841699) /locus_tag="TCM_026153" /note="paralog of Thecc1EG026164t1" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein, putative" /protein_id="EOY10859.1" /db_xref="Phytozome:POPTR_0019s03690.1" /db_xref="TAIR:AT2G21840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPB2" /translation="MEIKLASHEHSMHYYCFHETDDKQCHKCREEICGAAYACLRCQL WLHESCAKALEHLPREITHPLHSQHHLMLDWSGVFTREFICDICLKISSGTNYTCSRC NFELDLVCAFSTNDDQQAMKKERSSADRDKQIIQHYCHRDPLVLYKHSSKEEHDYNCS WCDKPLTGIFYGCKGCRFFLHEFCTNKIPKTLNHPFHPSHPLRLHFVDSNTNCNACTQ LIRQRTASTYSYCCQECNFNLDFDCAKLFPTLKHECHDHYLTYFGLNNFKDKIIKYYL ECNTCHELCLDSLYRCVQCDLNLHLKCVPIPPSAEHRYHIHLLVLENSIKEDDFGEYY CDICEKERDPTHEVYYCRKCTYIAHIQCVLNEDETSAGKVSSSAPESMDSEAFVEKEM EQFETIYDDLQQTLVRPLIHEHLLKFCEATEKFEPQYCTACRLILSGPGYICEECPLY IQGYYLHEKCSQLPNEIQHPLHSHHVLNLYTRHPSMGDFIICDECGDFFRGFFYLCEE CDFELDLKCAMQAGPKRGLSTLKEAERETELFHFSHRHKLVFGNFRDPTYERQCNFCR LQIFGPTYYCFLCGWILHESCLRLPQVMQVPLHPQHMSILSSTRYGCCLACALKLLSA GYSYICEECHLSFHITCANSLRRPLKRKSHMHDLYCFGTEFDRFFAMYSTSIDFYTAY FCSHCGEVCSGQPFYRCLECYINFHIECVPIPQIVKSKSHIHPFTLKDSFIEDDLGEY YCDVCEKERHLSDGIYYCEECQGLFVAHIECVLLEEEEVLSYLVPRESERERKKRTRK AYLARRRQISNLQKAIDHEEQLQGI" gene 36842931..36846682 /locus_tag="TCM_026154" /note="dbxref CacaoGD:Thecc1EG026154" mRNA join(36842931..36844074,36844266..36844388, 36844865..36845644,36845736..36846682) /locus_tag="TCM_026154" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:TAIR:AT2G21850.1.3" /inference="similar to AA sequence:frave:gene34192" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.11 coverage; weak similarity to Cysteine/Histidine-rich C1 domain family protein" CDS join(36842950..36844074,36844266..36844388, 36844865..36845644,36845736..36846404) /locus_tag="TCM_026154" /note="dbxref frave:gene34192; weak similarity to Cysteine/Histidine-rich C1 domain family protein" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10860.1" /db_xref="TAIR:AT2G21830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPB2" /translation="MGNSPAREKRSFDSHEHTLFHSYVEKGTTKQRCDVCRKEIYGLV YACETCKFSRHRWCAERRMPSEITHPSHSMHKLKLQDESSDFLCERCFHNSRGPRYHC YSCDIDVDLACASSTKDQLTREDQGLIPAGRARNRIKHFSHGEPLALFKYRKTTKYYE LDCSWCDKRLSGMSYGCFKSGPYGCRFFLHESCMSKIPTRLQHPFHRQHYLYVQYYNP FYQFSCNACNCPLLLSLTAYYACHECNFYLHISCARLLPTLNHKCHKHSLTYFSRSTE KRFNCNACGGDCDSKKSKEGGFYRCVQCNFNIHFRCLPISPIAKHRYHRHFLILHDGI IEDDIREYYCDICEEERNPKHHIYYCKKCTYIGHVECVVKEVSDSEVRKMMDLTKRVQ LSDGKIPKLKETAGNYMDKNQLFEMQEVHLLLKDLQQEEKEKKKEKKELREKDEDEES SSDDEEDEETDDIDDEWTSEEEEDGDKEEMNEEEEEDEEKEGKDEQKMEEEERLEENE ESSDEEKEEEDDKLKETSEEEKKEFKNKEEKHEEEDEEKEGENEEHMEEEEGLEENEE NSDEEKEEEDDKLKEMSEEEKKEFKNKEEKHEVEDEKKEGKNEEHMEEDEEGELEENE ESSDEEEDESEDGNEEKNEKNEANQGKASTSINGTKKMSAHPLKPSKTLALEIEHFSH WHPLSLFHLTKKYEYENCKACRQELNGTVYICKTCEFPLFYYGLHKACAELPYELIHP FHSLHYLTLLPQFPYSETRCFLCDECGEFSGGFVYLCMDCQFKIDVKCAMLVASKNGC QKPKRRGKETKLLHFSHQHMLVLGNLGNKSAACCGCNLPILGLAYCCLDCLYFIHESC LRTLPQEIQHPFHPLHPLVAFHDPNDRKCHACKLEFRLSDFI" gene complement(36848259..36855665) /locus_tag="TCM_026155" /note="dbxref CacaoGD:Thecc1EG026155" mRNA complement(join(36848259..36848906,36849240..36849319, 36855552..36855665)) /locus_tag="TCM_026155" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041247t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(36848502..36848906,36849240..36849296)) /locus_tag="TCM_026155" /note="paralog of Thecc1EG041247t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10861.1" /translation="MYFVIRDRSPNCTTSYIIVIKQYKHNVTREVRRCTHGVILVVVL GIVVLAPFLLGDQGDAITEAITELLSSVDLLLLPIILLLTIRFFSSDRGSFIPSISST GEPDSIHLVSCSPFGVALFLVAPQTLGSSLPHTTFTSLVVMMTPIFDSASI" mobile_element complement(36850323..36850816) /note="source:INTACT1604F_F75_scaffold_10-int 5025 5568" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(36854234..36857664) /locus_tag="TCM_026157" /note="dbxref CacaoGD:Thecc1EG026157" mRNA complement(join(36854234..36854258,36856956..36857664)) /locus_tag="TCM_026157" /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045380t1" /inference="similar to AA sequence:frave:gene24361" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.43 coverage" CDS complement(36856989..36857507) /locus_tag="TCM_026157" /note="dbxref frave:gene24361; paralog of Thecc1EG045380t1" /codon_start=1 /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /protein_id="EOY10862.1" /db_xref="TAIR:AT4G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BMR0" /translation="MKSAFLNGVLSEDIYIEQPEGYVKEGNEGKIYKLRKALYGLQQA PRAWYERIDEHFKNQGFVKSVNEHTLYVKKSNELIVLIVDLYVDDMLITRPDKAYLED FKTQMMNVFDMTDMGLMSYFLGMEVLQLPDQIILHQKKYAKDLLKKFDMDSCKAIDLR FTTGNKLIKEDE" gene 36857874..36858410 /locus_tag="TCM_026159" /note="dbxref CacaoGD:Thecc1EG026159" mRNA 36857874..36858410 /locus_tag="TCM_026159" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:TAIR:AT2G21850.1.3" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc5230t1" CDS 36858000..36858308 /locus_tag="TCM_026159" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10863.1" /translation="MQIEYFDHPHPLSFNEAIEQNRNLLCNAYSLEISTQACACKNCK YCLHKTCTTLPYEVPHLSHPSILSSSSRMDVSHSHVMNAETILMGLFTSAIHVISILT " gene complement(36860482..36873604) /locus_tag="TCM_026160" /note="dbxref CacaoGD:Thecc1EG026160" mRNA complement(join(36860482..36862443,36862949..36863155, 36863330..36863996,36865357..36865518,36865899..36866013, 36866092..36866299,36866433..36866787,36866876..36866967, 36867179..36867495,36867698..36868057,36868271..36868381, 36868485..36868819,36870268..36870418,36872876..36872952, 36873093..36873156,36873230..36873604)) /locus_tag="TCM_026160" /product="Reduced epidermal fluorescence 4, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene13611" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004452t1" /inference="similar to AA sequence:Phytozome:GSVIVT01029847001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10458t2" mRNA complement(join(36861184..36862443,36862949..36863155, 36863330..36863996,36865357..36865518,36865899..36866013, 36866092..36866299,36866433..36866787,36866876..36866967, 36867179..36867495,36867698..36868057,36868271..36868381, 36868485..36868790,36872876..36872978,36873093..36873156, 36873230..36873370)) /locus_tag="TCM_026160" /product="Reduced epidermal fluorescence 4, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene13611" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004452t1" /inference="similar to AA sequence:Phytozome:GSVIVT01029847001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10458t1; alternateUTRof:Thecc1EG026160t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10458t2" mRNA complement(join(36861184..36862443,36862949..36863155, 36863330..36863996,36865357..36865518,36865899..36866013, 36866092..36866299,36866433..36866787,36866876..36866967, 36867179..36867495,36867698..36868057,36868271..36868381, 36868485..36868790,36872876..36872952,36873091..36873156, 36873230..36873370)) /locus_tag="TCM_026160" /product="Reduced epidermal fluorescence 4, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene13611" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004452t1" /inference="similar to AA sequence:Phytozome:GSVIVT01029847001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10458t2; alternateUTRof:Thecc1EG026160t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10458t2" CDS complement(join(36861359..36862443,36862949..36863155, 36863330..36863996,36865357..36865518,36865899..36866013, 36866092..36866299,36866433..36866787,36866876..36866967, 36867179..36867495,36867698..36868057,36868271..36868381, 36868485..36868744)) /locus_tag="TCM_026160" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG004452t1" /codon_start=1 /product="Reduced epidermal fluorescence 4, putative isoform 1" /protein_id="EOY10864.1" /db_xref="Phytozome:GSVIVT01029847001" /db_xref="TAIR:AT3G23590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C5DB63" /translation="MEIEKEIEQRIARWKEQEDTTPLVWVAEMAKCIVSHGLGLPSVE LGQVLVSHLCFRTNQPSLWKFLQHAFSSRLLSPLHVLSLLTCRVIPFRHSQPEAYRLY VELLRQYALSFDPSVPDTCKQQIVDSVDVTLQLSQNYGVHVVELGHAFVFFFSTIVTA LIDCILDDWGLRMTSLDAQNGAVGTGSMDHHPIDTDTGGVYHIERDKQLEQMRWKNSF LAIEVLGQLTESLRAMVLLRLVYLNMPEKFNDLLQRLHFLEANKSACPSLTSANQILA RLLANVKRIPSFEYQLKKHRLIGMLVGKGSCKPVSCCNFGSGQSACWVPFDIYMENAM DGKQLSVKSAIVILRETIYTLRVFNRASWKETFLALWLSALRLVQRERDPLEGPIPHL EARLCILLSIVPLAIANVFEDEAKLQSSSSQESRYEDGMGEKGCDATKSGLISALQLL GNFSGLLSPPASITAAANAAAAKVSSFILKNRRDGRTSGSPIETCLNAGGNMRHLIVE ACIARNLIDSSAYFWLGYVSSSMVSSELSPIKKSPWTTFMEGAPLSGHLVNSLLTTPA SSLAEIEKLYHIALHGSVEEKSAAAKILCGASLSQGWNVQEHVVHFVVKLLSPPVPPG YVGPRNHLIDHMPMLCAVLFGASSIDTVHILSLHGVIPEVAASLMPLCETFGSLVPTP CSKSSTGDEPSIYMVFSAAFLFLLRLWKFYKPPLELCTTGGVMGGELTLEYLLLLRNS RIASQNFATHDEMDSNSEQLEFASNKPIYIDYFPKLRAWYCQNRSCIASTLSGLCSGN PVHEVANKILSMIYRKMAESGASQGDSATPSSSSICGSLASSREDVYQIPMLSAWDVL EATPFVLEAILTACAYERLSSRDVTTGLRDLVDFLPASVAVIISYFCAEVTRGIWKPV PMNGTDWPSPAAYLPLVESQMKEILATAGVHVPSYTLGTSVMLPLPIAALVSLTITFK LNKSLEYIHAVVGPALENCASSCPWPSITIIGSLWAQKIHRWHNFIVVSCSRSIFRQN KEAIEQLLRSCFTSFLGSNNSTLSTNQSGVNGLLGSIIATAGVCPSIAPGFLYLRSCR TIQDVQYVNDVIVKLVAEYARESAARWTCKDTRNLRSSNSSLSFAVDSAREVAMLGAS LLCVSGGFQLVQELYQETILTWLLSSRGEKLGNVSSVACIVEGYAMAYLLMMSGSLAW CVGAKAPSWAISKRACVVGVHMDFLARVLEGHILLGCDPATWRAYVSCLVGLIVNCAP AWIQQVKLETLRKLAKGLIGWHEYELALSLLERGGISAIESVAELVNVIY" CDS complement(join(36861359..36862443,36862949..36863155, 36863330..36863996,36865357..36865518,36865899..36866013, 36866092..36866299,36866433..36866787,36866876..36866967, 36867179..36867495,36867698..36868057,36868271..36868381, 36868485..36868744)) /locus_tag="TCM_026160" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG004452t1" /codon_start=1 /product="Reduced epidermal fluorescence 4, putative isoform 1" /protein_id="EOY10865.1" /db_xref="Phytozome:GSVIVT01029847001" /db_xref="TAIR:AT3G23590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C5DB63" /translation="MEIEKEIEQRIARWKEQEDTTPLVWVAEMAKCIVSHGLGLPSVE LGQVLVSHLCFRTNQPSLWKFLQHAFSSRLLSPLHVLSLLTCRVIPFRHSQPEAYRLY VELLRQYALSFDPSVPDTCKQQIVDSVDVTLQLSQNYGVHVVELGHAFVFFFSTIVTA LIDCILDDWGLRMTSLDAQNGAVGTGSMDHHPIDTDTGGVYHIERDKQLEQMRWKNSF LAIEVLGQLTESLRAMVLLRLVYLNMPEKFNDLLQRLHFLEANKSACPSLTSANQILA RLLANVKRIPSFEYQLKKHRLIGMLVGKGSCKPVSCCNFGSGQSACWVPFDIYMENAM DGKQLSVKSAIVILRETIYTLRVFNRASWKETFLALWLSALRLVQRERDPLEGPIPHL EARLCILLSIVPLAIANVFEDEAKLQSSSSQESRYEDGMGEKGCDATKSGLISALQLL GNFSGLLSPPASITAAANAAAAKVSSFILKNRRDGRTSGSPIETCLNAGGNMRHLIVE ACIARNLIDSSAYFWLGYVSSSMVSSELSPIKKSPWTTFMEGAPLSGHLVNSLLTTPA SSLAEIEKLYHIALHGSVEEKSAAAKILCGASLSQGWNVQEHVVHFVVKLLSPPVPPG YVGPRNHLIDHMPMLCAVLFGASSIDTVHILSLHGVIPEVAASLMPLCETFGSLVPTP CSKSSTGDEPSIYMVFSAAFLFLLRLWKFYKPPLELCTTGGVMGGELTLEYLLLLRNS RIASQNFATHDEMDSNSEQLEFASNKPIYIDYFPKLRAWYCQNRSCIASTLSGLCSGN PVHEVANKILSMIYRKMAESGASQGDSATPSSSSICGSLASSREDVYQIPMLSAWDVL EATPFVLEAILTACAYERLSSRDVTTGLRDLVDFLPASVAVIISYFCAEVTRGIWKPV PMNGTDWPSPAAYLPLVESQMKEILATAGVHVPSYTLGTSVMLPLPIAALVSLTITFK LNKSLEYIHAVVGPALENCASSCPWPSITIIGSLWAQKIHRWHNFIVVSCSRSIFRQN KEAIEQLLRSCFTSFLGSNNSTLSTNQSGVNGLLGSIIATAGVCPSIAPGFLYLRSCR TIQDVQYVNDVIVKLVAEYARESAARWTCKDTRNLRSSNSSLSFAVDSAREVAMLGAS LLCVSGGFQLVQELYQETILTWLLSSRGEKLGNVSSVACIVEGYAMAYLLMMSGSLAW CVGAKAPSWAISKRACVVGVHMDFLARVLEGHILLGCDPATWRAYVSCLVGLIVNCAP AWIQQVKLETLRKLAKGLIGWHEYELALSLLERGGISAIESVAELVNVIY" CDS complement(join(36861359..36862443,36862949..36863155, 36863330..36863996,36865357..36865518,36865899..36866013, 36866092..36866299,36866433..36866787,36866876..36866967, 36867179..36867495,36867698..36868057,36868271..36868381, 36868485..36868744)) /locus_tag="TCM_026160" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG004452t1" /codon_start=1 /product="Reduced epidermal fluorescence 4, putative isoform 1" /protein_id="EOY10866.1" /db_xref="Phytozome:GSVIVT01029847001" /db_xref="TAIR:AT3G23590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C5DB63" /translation="MEIEKEIEQRIARWKEQEDTTPLVWVAEMAKCIVSHGLGLPSVE LGQVLVSHLCFRTNQPSLWKFLQHAFSSRLLSPLHVLSLLTCRVIPFRHSQPEAYRLY VELLRQYALSFDPSVPDTCKQQIVDSVDVTLQLSQNYGVHVVELGHAFVFFFSTIVTA LIDCILDDWGLRMTSLDAQNGAVGTGSMDHHPIDTDTGGVYHIERDKQLEQMRWKNSF LAIEVLGQLTESLRAMVLLRLVYLNMPEKFNDLLQRLHFLEANKSACPSLTSANQILA RLLANVKRIPSFEYQLKKHRLIGMLVGKGSCKPVSCCNFGSGQSACWVPFDIYMENAM DGKQLSVKSAIVILRETIYTLRVFNRASWKETFLALWLSALRLVQRERDPLEGPIPHL EARLCILLSIVPLAIANVFEDEAKLQSSSSQESRYEDGMGEKGCDATKSGLISALQLL GNFSGLLSPPASITAAANAAAAKVSSFILKNRRDGRTSGSPIETCLNAGGNMRHLIVE ACIARNLIDSSAYFWLGYVSSSMVSSELSPIKKSPWTTFMEGAPLSGHLVNSLLTTPA SSLAEIEKLYHIALHGSVEEKSAAAKILCGASLSQGWNVQEHVVHFVVKLLSPPVPPG YVGPRNHLIDHMPMLCAVLFGASSIDTVHILSLHGVIPEVAASLMPLCETFGSLVPTP CSKSSTGDEPSIYMVFSAAFLFLLRLWKFYKPPLELCTTGGVMGGELTLEYLLLLRNS RIASQNFATHDEMDSNSEQLEFASNKPIYIDYFPKLRAWYCQNRSCIASTLSGLCSGN PVHEVANKILSMIYRKMAESGASQGDSATPSSSSICGSLASSREDVYQIPMLSAWDVL EATPFVLEAILTACAYERLSSRDVTTGLRDLVDFLPASVAVIISYFCAEVTRGIWKPV PMNGTDWPSPAAYLPLVESQMKEILATAGVHVPSYTLGTSVMLPLPIAALVSLTITFK LNKSLEYIHAVVGPALENCASSCPWPSITIIGSLWAQKIHRWHNFIVVSCSRSIFRQN KEAIEQLLRSCFTSFLGSNNSTLSTNQSGVNGLLGSIIATAGVCPSIAPGFLYLRSCR TIQDVQYVNDVIVKLVAEYARESAARWTCKDTRNLRSSNSSLSFAVDSAREVAMLGAS LLCVSGGFQLVQELYQETILTWLLSSRGEKLGNVSSVACIVEGYAMAYLLMMSGSLAW CVGAKAPSWAISKRACVVGVHMDFLARVLEGHILLGCDPATWRAYVSCLVGLIVNCAP AWIQQVKLETLRKLAKGLIGWHEYELALSLLERGGISAIESVAELVNVIY" mobile_element complement(36869886..36870009) /note="source:scaffold_1_CACTA_0029 7133 7233" /mobile_element_type="transposon:TIR/CACTA" mobile_element 36870279..36870484 /note="source:scaffold_6_CACTA_0709 1990 2196" /mobile_element_type="transposon:TIR/CACTA" mobile_element 36870676..36870813 /note="source:scaffold_6_CACTA_0709 2184 2325" /mobile_element_type="transposon:TIR/CACTA" gene complement(36872834..36877841) /locus_tag="TCM_026162" /note="dbxref CacaoGD:Thecc1EG026162" mRNA complement(join(36872834..36873156,36873628..36874223, 36874900..36875098,36875304..36875403,36877724..36877841)) /locus_tag="TCM_026162" /product="Cysteine/Histidine-rich C1 domain family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026167t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.11 coverage" gene complement(36873654..36876657) /locus_tag="TCM_026163" /note="dbxref CacaoGD:Thecc1EG026163" mRNA complement(join(36873654..36873686,36874375..36874507, 36875457..36876657)) /locus_tag="TCM_026163" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.88 coverage" CDS complement(join(36873720..36874223,36874900..36875098, 36875304..36875314)) /locus_tag="TCM_026162" /note="paralog of Thecc1EG026167t1" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein, putative" /protein_id="EOY10867.1" /translation="MAYWEIEHFNHLYPLSYYDVIEKNEDVLCKACNLEIYVQAYGCE CCKYYLHNQCTKLPYEVLHPLHPQLKLDVKCVTLTDLKNEGQKLKEMAKESKVCPFEQ EHKLFFFNVRHKVKHNFSCGICFLPLLGLRHACFRCGYLLHESCLGFPWEMTLPFHPE HPFVNKDPCAWCLACFGPFQYRIIYNCEQCVFINLHLSCANSLWQAIGSKSHQHPLFY FGTECQKPLRQYLWNLSFL" mobile_element complement(36874336..36874865) /note="source:CACAO_Again_on_S_E61_scaffold_2 15 542" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(36874705..36874891) /note="source:scaffold_5_CACTA_0610 7385 7574" /mobile_element_type="transposon:TIR/CACTA" CDS complement(36875924..36876271) /locus_tag="TCM_026163" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10868.1" /translation="MCGQGSKGKGRGRILKGSGKNNCDNVTLGQSSCNRQNDYGRKKK EEQKCLNSSERKGKDKSSISDEDIRRRDPVFKKEAEEIWEMSKKLGLHILREKEKVIK RSWSLKRQTQMGG" gene 36877704..36880743 /locus_tag="TCM_026164" /note="dbxref CacaoGD:Thecc1EG026164" mRNA join(36877704..36879090,36879209..36879328, 36879590..36880743) /locus_tag="TCM_026164" /product="Cysteine/Histidine-rich C1 domain family protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT2G21850.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026153t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s03690.1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS join(36877990..36879090,36879209..36879328, 36879590..36880708) /locus_tag="TCM_026164" /note="paralog of Thecc1EG026153t1" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein, putative" /protein_id="EOY10869.1" /db_xref="Phytozome:POPTR_0019s03690.1" /db_xref="TAIR:AT2G21840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPB2" /translation="MEIKLASHEHSMQYHCFHETDDILCDKCSKKICGAAYACLSCQL WLHESCAKALEHLPREITHPLHSQHHLILDWSGITNEFICDICLKISSGTNYVCCRCD FELDLVCAFSAHDDQQAMKKKERSSADRDKQIIQHYCHRDPLVLYKHSSKEGNDSNCS WCDKPLTGIFYGCKGCRFFLHEFCTNKIPKTLNHPFHPSHPLRLHFVDSNTNCNACTQ LIRQRTASTYSYCCQECNFNLDFDCAKLFPTLKHECHDHYLTYFGLNNFKDKIIKYYL ECNTCHELCLDSLYRCVQCDLNLHLKCVPIPPIAEHGYHTCHQLVLENSIKEDDFGEY YCDICEEERDPTHQVYYCKKCTYITHIQCVLNKDKTSAGKVSSSAPESIDSEAFVEKE MEEFGTIDDHLQQTLVRPLIHEHPLKFCEATEKFEHQYCRACRLTLSGPGYICEECPL YIHGYYLHDKCSHLPSEIQHPLHSHHGLNLYTRPPHMVDFIICDECGDISPGFIYLCE ECDFKLDVKCAMRAVPKSELSTLKEAERETELFHFSHKHKLLFCNFRDPTYKRQCSFC RLQIFGPTYYCFRCGWVLHESCLKLPQVMQVPIHPQHILALSYARYGFCHACALKLLS AGYSYSCEECYLSFHITCADSLRRALKRDSHMHDLYYFGTEFQRFFAMYSDFIDIFAG YFCSHCGEICSGQAFYRCLECHINFHLECVTLPQTVKSKNHVHHLIFKDSFIEDDLGE YYCDACEKERHPNDHIYYCEECQGLFVTHIECVLLKVNL" gene 36882434..36883732 /locus_tag="TCM_026165" /note="dbxref CacaoGD:Thecc1EG026165" mRNA 36882434..36883732 /locus_tag="TCM_026165" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:TAIR:AT2G21850.1" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.35 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc4506t1" CDS 36883013..36883396 /locus_tag="TCM_026165" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10870.1" /translation="MANHWLSSSTGRQQNIMNLIVVRLTSVYQACPMVVFILECLLAG SFSMNPVFLRYPKNCSILFIQHTIFTCNTTMATMISLAVNLNVYRIYKHVTPVMSVNS TYIFAVLGCYPHSNINAISIVSPIF" gene 36884394..36887754 /locus_tag="TCM_026166" /note="dbxref CacaoGD:Thecc1EG026166" mRNA join(36884394..36885282,36886055..36886528, 36887130..36887754) /locus_tag="TCM_026166" /product="Uncharacterized protein" /inference="similar to AA sequence:Phytozome:POPTR_0019s03690.1" /note="quality class is medium, express is medium, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.42 coverage" CDS join(36884488..36885282,36886055..36886528, 36887130..36887180) /locus_tag="TCM_026166" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10871.1" /db_xref="Phytozome:POPTR_0019s03690.1" /translation="MQKVHLLLEDLKQEEKKRKKEKKELGEKEADEESRSEDDEDEES DDINEEWTSEEKKQNIKEEISEERKEEENYEEEYEEEWTSEEEEKNNKEQMSEEEKEE ENYEEEYEEKEGKEEQKMEEEEELQENEESNDEEKDKEDDKEETSEEEKEEKDEEKME EEEDLEENEESSSEEKEEDDDKEETSEEEKEGELKDTEEKHEEEDKEKLENGKSSDED DEDESENENVEREEKNEANQGETSTSIIGFKTMSPYSLKPSEKSALECELDFHLVCAN SLRRVLKSGSHKHNLYYFGADSQMFFDHNVPDFGFYSELLHDVGNILEEDNKVRFLCS TCNEMCNEPFYRCVECAVNFHLKCVPIPQTIESIGHIYPFTLKDSFVEDDSGEYRCDI CEEKRQPKDHIYYCEECQGLFVAHIECVLSPVEESSPEGMEQECWLM" gene 36889730..36894487 /locus_tag="TCM_026167" /note="dbxref CacaoGD:Thecc1EG026167" mRNA join(36889730..36890643,36891100..36891186, 36891481..36892587,36892824..36892949,36894113..36894487) /locus_tag="TCM_026167" /product="Uncharacterized protein" /inference="similar to AA sequence:Phytozome:POPTR_0019s03690.1" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.21 coverage; weak similarity to Cysteine/Histidine-rich C1 domain family protein" CDS join(36889831..36890643,36891100..36891186, 36891481..36892587,36892824..36892949,36894113..36894229) /locus_tag="TCM_026167" /note="weak similarity to Cysteine/Histidine-rich C1 domain family protein" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10872.1" /db_xref="Phytozome:POPTR_0019s03690.1" /db_xref="TAIR:AT2G21830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPB2" /translation="MDIKPFLHKHYLLYDCYGHYDNIEEASCDKCNQQIDGWAYSCES CRKFWLHSYCAEEQLPPRISHPLHTQHLLTLFKGYDVDDFICDKCFTLSRGHRYHCSG CNFKVDVSCAASTNDAALVKLESKRSDEGLRKIQHFVHTNRLTGIFNYRKVAKKHYNC GWCEKHLSGMTYGCFESYEKFYIHESCLIKIPTKILGHPFHSSHPLYLQPTTMVNNSE PRCNACKDAILGKAYRCQKCELHLHVLCSRLQPCLKHEIHEHGLTSFQKNLSEVDSEA LIPKLMEQEETEKGNAESQSQDLEREIEHFTHRHSLSYYEVIEKNEDVFCKACDFEIY GQAYGCESCEYFLHIRCAKLSYEVLHPLHPKHPLRLFNDSQPVFCNECGDFSFGFSYV CYFCDFKLDVKCVTSTEPNNEGQRLKEMARESKLCPLEQDHELSFFNFRHKVQRGYLC SICFLPLSGLTYHCFACSYVVHESCLGFPLEITLPTLSEHPLHPTLNKGRYTCCLACR CPFSWEDIVYKCEQFRHISLHILCANSMRQAIRSKSHQHPLFYFGTECQNLFASMLNY EFFRQHFLFKCNKCYKSFGGVPFYRCVLCCINFHLECVPIPHFIKSKCHIHPFTLRHC FPEDDSEKYFCDVCEEERHPKNHVYVCEECQGLFVAHIECVLDNMVDEIAPAEDPSSN LVPDLENTFVQAEREVPTDESKEEQQSNNELLQSSYLPPPVLFISLQRFLSLSQKPLS HFGDSTGEE" mobile_element 36893312..36894294 /note="source:INTACT23_F11_scaffold_9-int 1 1014" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(36894327..36895287) /note="source:INTACT333_F20_scaffold_9-int 5969 6968" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 36895286..36896403 /note="source:INTACT567_F258_scaffold_9-int 5532 6615" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 36896401..36897222 /note="source:CACAO_M_E33977_F20_scaffold_4 63 897" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(36897229..36897650) /note="source:MITE_PIF_Tourist_6 1 419" /mobile_element_type="transposon:TIR/MITE" gene 36898660..36900168 /locus_tag="TCM_026169" /note="dbxref CacaoGD:Thecc1EG026169" mRNA 36898660..36900168 /locus_tag="TCM_026169" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026167t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.34 coverage" CDS 36899032..36899616 /locus_tag="TCM_026169" /note="paralog of Thecc1EG026167t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10873.1" /translation="MNIKPFLHEHYLLFDCYHNEEARCDQCNQQIDGWAYSCESCPKF WLHSSCAEEQLPSQISHPFHTQHLLTLSTDDFDGVDFICHKCFSLSRGHRYRRTNCNL KVDVSCAASANDATLEKLESKRSDDSSFEFPNFVHEHRLTGIFNYRKVGKKHYNCSWC EKHLSGMTYGCLLFLCSKQFYIHESCFIKIPTKI" gene 36900870..36902631 /locus_tag="TCM_026170" /note="dbxref CacaoGD:Thecc1EG026170" mRNA join(36900870..36901909,36902121..36902631) /locus_tag="TCM_026170" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026167t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s03690.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2253t1" CDS join(36901292..36901909,36902121..36902270) /locus_tag="TCM_026170" /note="paralog of Thecc1EG026167t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10874.1" /db_xref="Phytozome:POPTR_0019s03690.1" /translation="MHAFVVVMPFMNPVLDFHGRWHSHFIRNTPLHLILNHFFDVFCL ACRGPTRTDSIVYNCQQCRRISLHFLCANSLWRPLESRSHPHPLFYFGTECQKLFKLF DEFSERGFPFQCYKCYKLCIGVPFYRCVLCQINFHLKCVPIPYFIKSKCHIHPFTLRD CFVEDDSEKYFCDVCKEERHPKDHTYFCEECQGLFVAHIECVLHNMVEEIAPAEEPSS NLVLDFENISPRLRVKLSTDELTEEQQSDEENPAMKE" mobile_element 36903268..36903363 /note="source:CACAO_on_E216_scaffold_4 23 106" /mobile_element_type="transposon:TIR/hAT" mobile_element 36903357..36903595 /note="source:CACAO_on_E19_scaffold_3 582 815" /mobile_element_type="transposon:TIR/hAT" gene 36904649..36911178 /locus_tag="TCM_026171" /note="dbxref CacaoGD:Thecc1EG026171" mRNA join(36904649..36904855,36905075..36905082, 36906725..36907358,36907888..36908080,36908186..36908262, 36908356..36908395,36908608..36908665,36909338..36909407, 36909836..36910994) /locus_tag="TCM_026171" /product="Homeodomain-like superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29680.m001711" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003939t1" /inference="similar to AA sequence:ricco:29680.m001711" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc649t5; alternateUTRof:Thecc1EG026171t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc658t8" mRNA join(36904717..36904855,36906504..36906581, 36906732..36907358,36907888..36908080,36908186..36908262, 36908356..36908395,36908608..36908665,36909338..36909407, 36909836..36911024) /locus_tag="TCM_026171" /product="Homeodomain-like superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29680.m001711" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003939t1" /inference="similar to AA sequence:ricco:29680.m001711" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10303t4; alternateUTRof:Thecc1EG026171t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc658t8" mRNA join(36906413..36906581,36906732..36907358, 36907888..36908080,36908186..36908262,36908356..36908395, 36908608..36908665,36909338..36909407,36909836..36911178) /locus_tag="TCM_026171" /product="Homeodomain-like superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29680.m001711" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003939t1" /inference="similar to AA sequence:ricco:29680.m001711" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc658t8" mRNA join(36906504..36906581,36906732..36906746, 36906861..36907358,36907888..36908080,36908186..36908262, 36908356..36908395,36908608..36908665,36909338..36909407, 36909836..36910994) /locus_tag="TCM_026171" /product="Homeodomain-like superfamily protein, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:29680.m001711" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003939t1" /inference="similar to AA sequence:ricco:29680.m001711" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc649t3; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc658t8" CDS join(36906789..36907358,36907888..36908080, 36908186..36908262,36908356..36908395,36908608..36908665, 36909338..36909407,36909836..36910198) /locus_tag="TCM_026171" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29680.m001711; paralog of Thecc1EG003939t1" /codon_start=1 /product="Homeodomain-like superfamily protein, putative isoform 1" /protein_id="EOY10875.1" /db_xref="TAIR:AT5G29000.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPB6" /translation="MSSSFPALPTPFKEKYPKLPDSFQVSSERKVMKNSISPQESSLA PSNRTLGNSFSSPSIANNDMCASALAHDRHSQSPAFISQRSRDLASLPSIDSSYSDQS TALFNHPQEKKDVSWCIDRLQDFLDLPENVPDPNGLLESSTGVMASEDHSKRTDWQEW ADQLISVDDPLDTDWREFLDDTNASDPKVKVLNSSGDISKQQPQFHQNQPAPHGEFSS DAYPLSPAPPTRPRMRWTPELHEAFVDAVNILGGSERATPKGILKLMKVEGLTIYHVK SHLQKYRTARYKPESSEGTLENKMASIGEMKSLDLKAGMGITEALRLQMEVQKQLHEQ LEIQRNLQLRIEEQGRYLQMMFEKQKRMEDERTGAPSFNLDDASASLPGLTCPSCAND KSEALEQVHTKTGIDTRNASTTEDKSSQDVSRKQKALETNTADHIETNDNESGSPLSK RARTEK" CDS join(36906789..36907358,36907888..36908080, 36908186..36908262,36908356..36908395,36908608..36908665, 36909338..36909407,36909836..36910198) /locus_tag="TCM_026171" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29680.m001711; paralog of Thecc1EG003939t1" /codon_start=1 /product="Homeodomain-like superfamily protein, putative isoform 1" /protein_id="EOY10876.1" /db_xref="TAIR:AT5G29000.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPB6" /translation="MSSSFPALPTPFKEKYPKLPDSFQVSSERKVMKNSISPQESSLA PSNRTLGNSFSSPSIANNDMCASALAHDRHSQSPAFISQRSRDLASLPSIDSSYSDQS TALFNHPQEKKDVSWCIDRLQDFLDLPENVPDPNGLLESSTGVMASEDHSKRTDWQEW ADQLISVDDPLDTDWREFLDDTNASDPKVKVLNSSGDISKQQPQFHQNQPAPHGEFSS DAYPLSPAPPTRPRMRWTPELHEAFVDAVNILGGSERATPKGILKLMKVEGLTIYHVK SHLQKYRTARYKPESSEGTLENKMASIGEMKSLDLKAGMGITEALRLQMEVQKQLHEQ LEIQRNLQLRIEEQGRYLQMMFEKQKRMEDERTGAPSFNLDDASASLPGLTCPSCAND KSEALEQVHTKTGIDTRNASTTEDKSSQDVSRKQKALETNTADHIETNDNESGSPLSK RARTEK" CDS join(36906789..36907358,36907888..36908080, 36908186..36908262,36908356..36908395,36908608..36908665, 36909338..36909407,36909836..36910198) /locus_tag="TCM_026171" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29680.m001711; paralog of Thecc1EG003939t1" /codon_start=1 /product="Homeodomain-like superfamily protein, putative isoform 1" /protein_id="EOY10878.1" /db_xref="TAIR:AT5G29000.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPB6" /translation="MSSSFPALPTPFKEKYPKLPDSFQVSSERKVMKNSISPQESSLA PSNRTLGNSFSSPSIANNDMCASALAHDRHSQSPAFISQRSRDLASLPSIDSSYSDQS TALFNHPQEKKDVSWCIDRLQDFLDLPENVPDPNGLLESSTGVMASEDHSKRTDWQEW ADQLISVDDPLDTDWREFLDDTNASDPKVKVLNSSGDISKQQPQFHQNQPAPHGEFSS DAYPLSPAPPTRPRMRWTPELHEAFVDAVNILGGSERATPKGILKLMKVEGLTIYHVK SHLQKYRTARYKPESSEGTLENKMASIGEMKSLDLKAGMGITEALRLQMEVQKQLHEQ LEIQRNLQLRIEEQGRYLQMMFEKQKRMEDERTGAPSFNLDDASASLPGLTCPSCAND KSEALEQVHTKTGIDTRNASTTEDKSSQDVSRKQKALETNTADHIETNDNESGSPLSK RARTEK" CDS join(36906882..36907358,36907888..36908080, 36908186..36908262,36908356..36908395,36908608..36908665, 36909338..36909407,36909836..36910198) /locus_tag="TCM_026171" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29680.m001711; paralog of Thecc1EG003939t1" /codon_start=1 /product="Homeodomain-like superfamily protein, putative isoform 3" /protein_id="EOY10877.1" /db_xref="TAIR:AT3G04450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPB6" /translation="MKNSISPQESSLAPSNRTLGNSFSSPSIANNDMCASALAHDRHS QSPAFISQRSRDLASLPSIDSSYSDQSTALFNHPQEKKDVSWCIDRLQDFLDLPENVP DPNGLLESSTGVMASEDHSKRTDWQEWADQLISVDDPLDTDWREFLDDTNASDPKVKV LNSSGDISKQQPQFHQNQPAPHGEFSSDAYPLSPAPPTRPRMRWTPELHEAFVDAVNI LGGSERATPKGILKLMKVEGLTIYHVKSHLQKYRTARYKPESSEGTLENKMASIGEMK SLDLKAGMGITEALRLQMEVQKQLHEQLEIQRNLQLRIEEQGRYLQMMFEKQKRMEDE RTGAPSFNLDDASASLPGLTCPSCANDKSEALEQVHTKTGIDTRNASTTEDKSSQDVS RKQKALETNTADHIETNDNESGSPLSKRARTEK" gene 36911239..36916745 /locus_tag="TCM_026172" /note="dbxref CacaoGD:Thecc1EG026172" mRNA join(36911239..36911649,36912107..36912212, 36913082..36913230,36913444..36913693,36914081..36914190, 36914429..36914503,36914626..36914712,36915325..36915411, 36915781..36915918,36916539..36916745) /locus_tag="TCM_026172" /product="Peroxin-12" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s04500.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s04500.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaL_g13608t00001" CDS join(36911542..36911649,36912107..36912212, 36913082..36913230,36913444..36913693,36914081..36914190, 36914429..36914503,36914626..36914712,36915325..36915411, 36915781..36915918,36916539..36916610) /locus_tag="TCM_026172" /codon_start=1 /product="Peroxin-12" /protein_id="EOY10879.1" /db_xref="Phytozome:POPTR_0013s04500.1" /db_xref="TAIR:AT3G04460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M841" /translation="MLFQVGGQGARPTFFEMAAAQQLPSSLRGALTYSIGVLALRRPF LHKVLDYEDEFFALLMLVLETHSLRTTDASFSESLYGLRRRAAKIRTKQADIRSKSSD GIQHSGLERRQRVLSVVFLVVLPYFKSKLHSIYNKEREARLQASLWGPGDGRFEDVDY FDEGEASIASRTSTETEGSMRTRLAKNIQKIIGACYPWVHATTEGLTFSYQLLYLLDA TGFYSVGLHALGIHVCRATGQELMDTSSRISKIRSRERERLRGPPWLKAVQGTLLKCA YAVLDYAQTGLIAAVFIFKMMEWWYQSAEERMSAPTVYPPPPPPPPPKVAKDGIPLPP DRTICPLCSQKRANPSVVTVSGFVFCYACIHKYVSQYKRCPVTLMPADVDQIRRLFHD V" gene complement(36916754..36919214) /locus_tag="TCM_026173" /note="dbxref CacaoGD:Thecc1EG026173" mRNA complement(join(36916754..36917570,36917648..36918695, 36918788..36918867,36918962..36919214)) /locus_tag="TCM_026173" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01023442001" /inference="similar to AA sequence:ricco:29680.m001707" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10284t1" mRNA complement(join(36916754..36917570,36917648..36918867, 36918962..36919214)) /locus_tag="TCM_026173" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01023442001" /inference="similar to AA sequence:Phytozome:POPTR_0013s04490.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:PASA:2:TSA:puevd3b025318t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10284t1" CDS complement(join(36917490..36917570,36917648..36918695, 36918788..36918867,36918962..36919048)) /locus_tag="TCM_026173" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29680.m001707" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY10880.1" /db_xref="TAIR:AT1G04030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5P6" /translation="MGCFFACFSASKNKKHQHLVDGTFSNDHQKGEAIEAIQSTKEED FKIPFDPIAVKKEKLGELLNYSGKKKVTFDLNVRTHDEELPAVSSDKLLKNHEDEESK ETAEGSRSPVLYLTTSNEICKSQNDRYQNSAESEDELEDVDLEVSDLDDDNEDGKAEN EPQLVIEESSESLFSLSIESRKQVCEVESEEKEVTSPMPVDKSPIEEVKPTGLNRNGK DKGAQYVQSVLNPVENLAQWKEVKSKAGMPLKQHEKENFTLEQEFHIPVSPEPSFKFT TFSSKLCSKDNKPVGQETAVDTSLSSWLVEPENTPNSKASTNSVGNSASKKTNSPRSH EDRPILGALTMEELKQHSASTSPRKRRSQSPDETPIIGTVGSYWSHTGQTINSDSSFP SKGTPRTRSRNMLDERLKWNAIPFEARLERDLKREIKGV" CDS complement(join(36917490..36917570,36917648..36918763)) /locus_tag="TCM_026173" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY10881.1" /db_xref="Phytozome:POPTR_0013s04490.1" /db_xref="TAIR:AT1G04030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5P6" /translation="MHLFACLCCMRVLICLFHINLCREKLGELLNYSGKKKVTFDLNV RTHDEELPAVSSDKLLKNHEDEESKETAEGSRSPVLYLTTSNEICKSQNDRYQNSAES EDELEDVDLEVSDLDDDNEDGKAENEPQLVIEESSESLFSLSIESRKQVCEVESEEKE VTSPMPVDKSPIEEVKPTGLNRNGKDKGAQYVQSVLNPVENLAQWKEVKSKAGMPLKQ HEKENFTLEQEFHIPVSPEPSFKFTTFSSKLCSKDNKPVGQETAVDTSLSSWLVEPEN TPNSKASTNSVGNSASKKTNSPRSHEDRPILGALTMEELKQHSASTSPRKRRSQSPDE TPIIGTVGSYWSHTGQTINSDSSFPSKGTPRTRSRNMLDERLKWNAIPFEARLERDLK REIKGV" mobile_element complement(36919522..36919689) /note="source:scaffold_4_CACTA_0483 975 1141" /mobile_element_type="transposon:TIR/CACTA" mobile_element 36921024..36921669 /note="source:CACAO_on_E373_scaffold_1 17 723" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 36921629..36927608 /locus_tag="TCM_026174" /note="dbxref CacaoGD:Thecc1EG026174" mRNA join(36921629..36922228,36922332..36922380, 36922542..36922897,36923694..36924085,36924616..36924865, 36924978..36925143,36925235..36925337,36925508..36925636, 36925880..36926095,36926206..36927608) /locus_tag="TCM_026174" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29680.m001706" /inference="similar to AA sequence:ricco:29680.m001706" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:PASA:2:TSA:puevd3b025319t1a3; alternateUTRof:Thecc1EG026174t1; inference alignment:Newbler:10:TSA:cgbaB_g00531t00002" mRNA join(36921629..36922134,36922332..36922897, 36923694..36924085,36924616..36924865,36924978..36925143, 36925235..36925337,36925508..36925718,36925880..36926095, 36926206..36926644) /locus_tag="TCM_026174" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:29680.m001706" /inference="similar to AA sequence:ricco:29680.m001706" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:PASA:2:TSA:puevd3b025319t1a4; alternateUTRof:Thecc1EG026174t3; inference alignment:Newbler:10:TSA:cgbaB_g00531t00002" mRNA join(36921629..36922134,36922332..36922897, 36923694..36924085,36924616..36924865,36924978..36925143, 36925235..36925337,36925508..36925636,36925880..36926095, 36926206..36926644) /locus_tag="TCM_026174" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29680.m001706" /inference="similar to AA sequence:ricco:29680.m001706" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:PASA:2:TSA:puevd3b025319t1a5; alternateUTRof:Thecc1EG026174t1; inference alignment:Newbler:10:TSA:cgbaB_g00531t00002" mRNA join(36921629..36922134,36922332..36922380, 36922542..36922897,36923694..36924085,36924616..36924865, 36924978..36925143,36925235..36925337,36925508..36925718, 36925880..36926095,36926206..36926644) /locus_tag="TCM_026174" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:29680.m001706" /inference="similar to AA sequence:ricco:29680.m001706" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:PASA:2:TSA:puevd3b025319t1a2; inference alignment:Newbler:10:TSA:cgbaB_g00531t00002" mRNA join(36921629..36922134,36922332..36922380, 36922542..36922897,36923694..36924085,36924616..36924865, 36924978..36925143,36925235..36925337,36925508..36925636, 36925880..36926095,36926206..36926633) /locus_tag="TCM_026174" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29680.m001706" /inference="similar to AA sequence:ricco:29680.m001706" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00531t00002" mRNA join(36921923..36922897,36923694..36924085, 36924616..36924865,36924978..36925143,36925235..36925337, 36925508..36925636,36925880..36926095,36926206..36926644) /locus_tag="TCM_026174" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29680.m001706" /inference="similar to AA sequence:ricco:29680.m001706" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01797t00001; alternateUTRof:Thecc1EG026174t1; inference alignment:Newbler:10:TSA:cgbaB_g00531t00002" mRNA join(36922146..36922228,36922332..36922897, 36923694..36924085,36924616..36924865,36924978..36925143, 36925235..36925337,36925508..36925636,36925880..36926095, 36926206..36926644) /locus_tag="TCM_026174" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29680.m001706" /inference="similar to AA sequence:ricco:29680.m001706" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:PASA:2:TSA:puevd3b025319t1a7; alternateUTRof:Thecc1EG026174t1; inference alignment:Newbler:10:TSA:cgbaB_g00531t00002" CDS join(36922666..36922897,36923694..36924085, 36924616..36924865,36924978..36925143,36925235..36925337, 36925508..36925636,36925880..36926095,36926206..36926484) /locus_tag="TCM_026174" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29680.m001706" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY10882.1" /db_xref="TAIR:AT5G28910.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KBG5" /translation="MEPTNQKFLERVVSQRALQMGSSFPCQICVVGFLCGVCLTSLFL AALTSLGTYGFGGISFSSISMGISPLNSSSEIINVGTSIDCKFKLKETEKWVVSQQRK TESDDERVSLLTEAWGALLTDKADEESEFLQRFGLSKSSIPNAPHLDNCKLSARVKKR LDTRAGAERFPPWTTWKGSLDMFPATAANEQIRHFRHQAISEGAYPPWIVGSDEENYP LTRKVQRDIWIHQHPVNCRDPTVKFLVADWETLPGFGIGAQFAGMCGLLAIAINEKRV LVTNYYNRADHDGCKGSSRSSWSCYFFPETSQECRDRAFELMQTKEAWEKGIIKGKEN YNSKEIWTGRIPRVWGDPWSYLQPTTEINGTLIAFHRKMDRRWWRAQAVRYLMRFQTE YTCGLLNIARHAAFGKEAAKMVLATIDREWPKVITNKPKTDIEEFVWSNHKPWVPRPL LSMHVRMGDKACEMKVVEFEGYMELADHIRKRFPHLNNIWLSTEMQEVIDKTKSYPHW NFYYTNVTRQVRNIAMATYEASLGRKTSTNYPLVNFLMAAESDFFIGALGSTWCFLID GMRNTGGKVMAGYLSVNKDRFW" CDS join(36922666..36922897,36923694..36924085, 36924616..36924865,36924978..36925143,36925235..36925337, 36925508..36925636,36925880..36926095,36926206..36926484) /locus_tag="TCM_026174" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29680.m001706" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY10883.1" /db_xref="TAIR:AT5G28910.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KBG5" /translation="MEPTNQKFLERVVSQRALQMGSSFPCQICVVGFLCGVCLTSLFL AALTSLGTYGFGGISFSSISMGISPLNSSSEIINVGTSIDCKFKLKETEKWVVSQQRK TESDDERVSLLTEAWGALLTDKADEESEFLQRFGLSKSSIPNAPHLDNCKLSARVKKR LDTRAGAERFPPWTTWKGSLDMFPATAANEQIRHFRHQAISEGAYPPWIVGSDEENYP LTRKVQRDIWIHQHPVNCRDPTVKFLVADWETLPGFGIGAQFAGMCGLLAIAINEKRV LVTNYYNRADHDGCKGSSRSSWSCYFFPETSQECRDRAFELMQTKEAWEKGIIKGKEN YNSKEIWTGRIPRVWGDPWSYLQPTTEINGTLIAFHRKMDRRWWRAQAVRYLMRFQTE YTCGLLNIARHAAFGKEAAKMVLATIDREWPKVITNKPKTDIEEFVWSNHKPWVPRPL LSMHVRMGDKACEMKVVEFEGYMELADHIRKRFPHLNNIWLSTEMQEVIDKTKSYPHW NFYYTNVTRQVRNIAMATYEASLGRKTSTNYPLVNFLMAAESDFFIGALGSTWCFLID GMRNTGGKVMAGYLSVNKDRFW" CDS join(36922666..36922897,36923694..36924085, 36924616..36924865,36924978..36925143,36925235..36925337, 36925508..36925636,36925880..36926095,36926206..36926484) /locus_tag="TCM_026174" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:29680.m001706" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY10886.1" /db_xref="TAIR:AT5G28910.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KBG5" /translation="MEPTNQKFLERVVSQRALQMGSSFPCQICVVGFLCGVCLTSLFL AALTSLGTYGFGGISFSSISMGISPLNSSSEIINVGTSIDCKFKLKETEKWVVSQQRK TESDDERVSLLTEAWGALLTDKADEESEFLQRFGLSKSSIPNAPHLDNCKLSARVKKR LDTRAGAERFPPWTTWKGSLDMFPATAANEQIRHFRHQAISEGAYPPWIVGSDEENYP LTRKVQRDIWIHQHPVNCRDPTVKFLVADWETLPGFGIGAQFAGMCGLLAIAINEKRV LVTNYYNRADHDGCKGSSRSSWSCYFFPETSQECRDRAFELMQTKEAWEKGIIKGKEN YNSKEIWTGRIPRVWGDPWSYLQPTTEINGTLIAFHRKMDRRWWRAQAVRYLMRFQTE YTCGLLNIARHAAFGKEAAKMVLATIDREWPKVITNKPKTDIEEFVWSNHKPWVPRPL LSMHVRMGDKACEMKVVEFEGYMELADHIRKRFPHLNNIWLSTEMQEVIDKTKSYPHW NFYYTNVTRQVRNIAMATYEASLGRKTSTNYPLVNFLMAAESDFFIGALGSTWCFLID GMRNTGGKVMAGYLSVNKDRFW" CDS join(36922666..36922897,36923694..36924085, 36924616..36924865,36924978..36925143,36925235..36925337, 36925508..36925636,36925880..36926095,36926206..36926484) /locus_tag="TCM_026174" /note="encoded by transcript variant 6; alternatively spliced; dbxref ricco:29680.m001706" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY10887.1" /db_xref="TAIR:AT5G28910.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KBG5" /translation="MEPTNQKFLERVVSQRALQMGSSFPCQICVVGFLCGVCLTSLFL AALTSLGTYGFGGISFSSISMGISPLNSSSEIINVGTSIDCKFKLKETEKWVVSQQRK TESDDERVSLLTEAWGALLTDKADEESEFLQRFGLSKSSIPNAPHLDNCKLSARVKKR LDTRAGAERFPPWTTWKGSLDMFPATAANEQIRHFRHQAISEGAYPPWIVGSDEENYP LTRKVQRDIWIHQHPVNCRDPTVKFLVADWETLPGFGIGAQFAGMCGLLAIAINEKRV LVTNYYNRADHDGCKGSSRSSWSCYFFPETSQECRDRAFELMQTKEAWEKGIIKGKEN YNSKEIWTGRIPRVWGDPWSYLQPTTEINGTLIAFHRKMDRRWWRAQAVRYLMRFQTE YTCGLLNIARHAAFGKEAAKMVLATIDREWPKVITNKPKTDIEEFVWSNHKPWVPRPL LSMHVRMGDKACEMKVVEFEGYMELADHIRKRFPHLNNIWLSTEMQEVIDKTKSYPHW NFYYTNVTRQVRNIAMATYEASLGRKTSTNYPLVNFLMAAESDFFIGALGSTWCFLID GMRNTGGKVMAGYLSVNKDRFW" CDS join(36922666..36922897,36923694..36924085, 36924616..36924865,36924978..36925143,36925235..36925337, 36925508..36925636,36925880..36926095,36926206..36926484) /locus_tag="TCM_026174" /note="encoded by transcript variant 7; alternatively spliced; dbxref ricco:29680.m001706" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY10888.1" /db_xref="TAIR:AT5G28910.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KBG5" /translation="MEPTNQKFLERVVSQRALQMGSSFPCQICVVGFLCGVCLTSLFL AALTSLGTYGFGGISFSSISMGISPLNSSSEIINVGTSIDCKFKLKETEKWVVSQQRK TESDDERVSLLTEAWGALLTDKADEESEFLQRFGLSKSSIPNAPHLDNCKLSARVKKR LDTRAGAERFPPWTTWKGSLDMFPATAANEQIRHFRHQAISEGAYPPWIVGSDEENYP LTRKVQRDIWIHQHPVNCRDPTVKFLVADWETLPGFGIGAQFAGMCGLLAIAINEKRV LVTNYYNRADHDGCKGSSRSSWSCYFFPETSQECRDRAFELMQTKEAWEKGIIKGKEN YNSKEIWTGRIPRVWGDPWSYLQPTTEINGTLIAFHRKMDRRWWRAQAVRYLMRFQTE YTCGLLNIARHAAFGKEAAKMVLATIDREWPKVITNKPKTDIEEFVWSNHKPWVPRPL LSMHVRMGDKACEMKVVEFEGYMELADHIRKRFPHLNNIWLSTEMQEVIDKTKSYPHW NFYYTNVTRQVRNIAMATYEASLGRKTSTNYPLVNFLMAAESDFFIGALGSTWCFLID GMRNTGGKVMAGYLSVNKDRFW" CDS join(36922666..36922897,36923694..36924085, 36924616..36924865,36924978..36925143,36925235..36925337, 36925508..36925651) /locus_tag="TCM_026174" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29680.m001706" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY10884.1" /db_xref="TAIR:AT5G28910.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KBG5" /translation="MEPTNQKFLERVVSQRALQMGSSFPCQICVVGFLCGVCLTSLFL AALTSLGTYGFGGISFSSISMGISPLNSSSEIINVGTSIDCKFKLKETEKWVVSQQRK TESDDERVSLLTEAWGALLTDKADEESEFLQRFGLSKSSIPNAPHLDNCKLSARVKKR LDTRAGAERFPPWTTWKGSLDMFPATAANEQIRHFRHQAISEGAYPPWIVGSDEENYP LTRKVQRDIWIHQHPVNCRDPTVKFLVADWETLPGFGIGAQFAGMCGLLAIAINEKRV LVTNYYNRADHDGCKGSSRSSWSCYFFPETSQECRDRAFELMQTKEAWEKGIIKGKEN YNSKEIWTGRIPRVWGDPWSYLQPTTEINGTLIAFHRKMDRRWWRAQAVRYLMRFQTE YTCGLLNIARHAAFGKEAAKMVLATIDREWPKVCSS" CDS join(36922666..36922897,36923694..36924085, 36924616..36924865,36924978..36925143,36925235..36925337, 36925508..36925651) /locus_tag="TCM_026174" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29680.m001706" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY10885.1" /db_xref="TAIR:AT5G28910.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4KBG5" /translation="MEPTNQKFLERVVSQRALQMGSSFPCQICVVGFLCGVCLTSLFL AALTSLGTYGFGGISFSSISMGISPLNSSSEIINVGTSIDCKFKLKETEKWVVSQQRK TESDDERVSLLTEAWGALLTDKADEESEFLQRFGLSKSSIPNAPHLDNCKLSARVKKR LDTRAGAERFPPWTTWKGSLDMFPATAANEQIRHFRHQAISEGAYPPWIVGSDEENYP LTRKVQRDIWIHQHPVNCRDPTVKFLVADWETLPGFGIGAQFAGMCGLLAIAINEKRV LVTNYYNRADHDGCKGSSRSSWSCYFFPETSQECRDRAFELMQTKEAWEKGIIKGKEN YNSKEIWTGRIPRVWGDPWSYLQPTTEINGTLIAFHRKMDRRWWRAQAVRYLMRFQTE YTCGLLNIARHAAFGKEAAKMVLATIDREWPKVCSS" gene complement(36926761..36931917) /locus_tag="TCM_026176" /note="dbxref CacaoGD:Thecc1EG026176" mRNA complement(join(36926761..36927580,36929119..36930780, 36930915..36931047,36931358..36931915)) /locus_tag="TCM_026176" /product="Ankyrin repeat family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s03660.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020383t2" /inference="similar to AA sequence:ricco:29680.m001705" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10632t1" mRNA complement(join(36926948..36927580,36929119..36931047, 36931358..36931917)) /locus_tag="TCM_026176" /product="Ankyrin repeat family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s03660.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020383t2" /inference="similar to AA sequence:ricco:29680.m001705" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.46 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc189t18; alternateUTRof:Thecc1EG026176t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10632t1" CDS complement(join(36927197..36927580,36929119..36930711)) /locus_tag="TCM_026176" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29680.m001705; paralog of Thecc1EG020383t2" /codon_start=1 /product="Ankyrin repeat family protein isoform 1" /protein_id="EOY10889.1" /db_xref="TAIR:AT3G04470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6KA74" /translation="MEDLSKYSHSPAHLAVARRDYAGLRRIISTLPRLAKAGEVNTEA ESLESELQADAVSTVIDRRDVPGRETPLHLAVRLRDPISAEILMGAGADWSLQNEHGW SALQEAVCSREEAIAMIIARHYQPLAWAKWCRRLPRIVASAARIRDFYMEITFHFESS VIPFIGRIAPSDTYRIWKRGSNLRADMTLAGFDGFRIQRSDQTFLFLGEGYTSEDGNL SLPPGSLIVLAHKEKEVTNALEGAGAQPTESEVAHEVALMSQTNMYRPGIDVTQAELV PHLNWRRQERSEMVGNWKAKVYDMLHVTVSVKSRRVPGAMTDEELFSVDDEERLANGG ENDEYDDVLTAEERMQLDSALRMGNSDGFGDDDEHGVLDCQENGSGGCYENCESNGVA KEKKSWFGWNKKVSKNSDDPEDSKILKKFSKLAPEGSNQKQVDSQKSSSEFTKEDTVD GKKGKDKGSKKKKKKGGITDAKHESEYKKGLRPVLWLTPDFPLKTEELMPLLDILANK VKAIRRLRELLTTKLPLGTFPVKVAIPIVPTIRVLVTFTKFEELQPMEEFSTPLSSPA HFQDAKSKESEGSTSWISWMRGSRGGQSSDSDSHRYKDEVDPFHIPSDYTWVDANEKK RRMKAKKAKSKKHKRQAAAKGGDGARQVNEEVEE" CDS complement(join(36927197..36927580,36929119..36930711)) /locus_tag="TCM_026176" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29680.m001705; paralog of Thecc1EG020383t2" /codon_start=1 /product="Ankyrin repeat family protein isoform 1" /protein_id="EOY10890.1" /db_xref="TAIR:AT3G04470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6KA74" /translation="MEDLSKYSHSPAHLAVARRDYAGLRRIISTLPRLAKAGEVNTEA ESLESELQADAVSTVIDRRDVPGRETPLHLAVRLRDPISAEILMGAGADWSLQNEHGW SALQEAVCSREEAIAMIIARHYQPLAWAKWCRRLPRIVASAARIRDFYMEITFHFESS VIPFIGRIAPSDTYRIWKRGSNLRADMTLAGFDGFRIQRSDQTFLFLGEGYTSEDGNL SLPPGSLIVLAHKEKEVTNALEGAGAQPTESEVAHEVALMSQTNMYRPGIDVTQAELV PHLNWRRQERSEMVGNWKAKVYDMLHVTVSVKSRRVPGAMTDEELFSVDDEERLANGG ENDEYDDVLTAEERMQLDSALRMGNSDGFGDDDEHGVLDCQENGSGGCYENCESNGVA KEKKSWFGWNKKVSKNSDDPEDSKILKKFSKLAPEGSNQKQVDSQKSSSEFTKEDTVD GKKGKDKGSKKKKKKGGITDAKHESEYKKGLRPVLWLTPDFPLKTEELMPLLDILANK VKAIRRLRELLTTKLPLGTFPVKVAIPIVPTIRVLVTFTKFEELQPMEEFSTPLSSPA HFQDAKSKESEGSTSWISWMRGSRGGQSSDSDSHRYKDEVDPFHIPSDYTWVDANEKK RRMKAKKAKSKKHKRQAAAKGGDGARQVNEEVEE" gene 36934052..36935635 /locus_tag="TCM_026178" /note="dbxref CacaoGD:Thecc1EG026178" mRNA join(36934052..36934626,36934829..36935635) /locus_tag="TCM_026178" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.35 coverage" CDS join(36934426..36934626,36934829..36934945) /locus_tag="TCM_026178" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10891.1" /translation="MISMVVRFELKMLGNVPLLCFSTSTKFVGGVLSFALTHTCFALK TVPGPLFSPCELWFLNKESQKPFGTLATVTIVDYESEGDMMATEPCTREKQAIICPVG DNS" mobile_element complement(36936455..36936700) /note="source:CACAO_Mariner_E220_scaffold_9 14743 14974" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene complement(36936758..36941702) /locus_tag="TCM_026179" /note="dbxref CacaoGD:Thecc1EG026179" mRNA complement(join(36936758..36937515,36937769..36938127, 36938372..36938704,36938842..36939187,36939392..36939464, 36939575..36939657,36939830..36939862,36939952..36940190, 36940298..36940570)) /locus_tag="TCM_026179" /product="Meiotically up-regulated gene 71 protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s03650.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s04460.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00175t00004" mRNA complement(join(36937031..36937515,36937769..36938127, 36938372..36938704,36938842..36939187,36939392..36939464, 36939575..36939657,36939830..36939862,36939952..36940177, 36940725..36940804,36941090..36941161,36941391..36941702)) /locus_tag="TCM_026179" /product="Endoribonucleases isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s03650.1" /inference="similar to AA sequence:Phytozome:POPTR_0019s03650.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00175t00004; inference alignment:Newbler:10:TSA:cgbaL_g00175t00004" mRNA complement(join(36937031..36937515,36937769..36938127, 36938372..36938704,36938842..36939187,36939392..36939464, 36939575..36939657,36939830..36939862,36939952..36940177, 36940698..36940804,36941090..36941161,36941391..36941702)) /locus_tag="TCM_026179" /product="Meiotically up-regulated gene 71 protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s03650.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s04460.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00175t00003; inference alignment:Newbler:10:TSA:cgbaL_g00175t00004" mRNA complement(join(36937031..36937515,36937769..36938127, 36938372..36938704,36938842..36939187,36939392..36939464, 36939575..36939657,36939830..36939862,36939952..36940177, 36940725..36940804,36941090..36941702)) /locus_tag="TCM_026179" /product="Meiotically up-regulated gene 71 protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s03650.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s04460.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00175t00002; inference alignment:Newbler:10:TSA:cgbaL_g00175t00004" mRNA complement(join(36937031..36937515,36937769..36938127, 36938372..36938704,36938842..36939187,36939392..36939464, 36939575..36939657,36939830..36939862,36939952..36940177, 36940698..36940804,36941090..36941702)) /locus_tag="TCM_026179" /product="Meiotically up-regulated gene 71 protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s03650.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s04460.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00175t00001; alternateUTRof:Thecc1EG026179t2; inference alignment:Newbler:10:TSA:cgbaL_g00175t00004" mRNA complement(join(36937031..36937515,36937769..36938127, 36938372..36938704,36938842..36939187,36939392..36939788)) /locus_tag="TCM_026179" /product="Meiotically up-regulated gene 71 protein isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s03650.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s04460.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00175t00005; inference alignment:Newbler:10:TSA:cgbaL_g00175t00004" CDS complement(join(36937300..36937515,36937769..36938127, 36938372..36938704,36938842..36939187,36939392..36939464, 36939575..36939657,36939830..36939862,36939952..36940177, 36940725..36940804,36941090..36941161,36941391..36941468)) /locus_tag="TCM_026179" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Endoribonucleases isoform 4" /protein_id="EOY10895.1" /db_xref="Phytozome:POPTR_0019s03650.1" /db_xref="TAIR:AT3G04480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4J3Q1" /translation="MKVVALVSGGKDSCYAMMKCIQYGHQIVAVANLLPDDDSVDELD SYMYQTVGHQIIVSYAECMGVPLFRRRIQGSTRHQKLSYRTTPGDEVEDMFILLNEVK KQIPSITAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGIVAI TVKVAAMGLDPAKHLGKEIAFLKPYLHKLKDLYGINVCGEGGEYETLTFDCPLFHNAR IMLDESQVVLHSSDSIAPVGVLHPLKFHLERKAKSNSISGNDKSNDLYRENISSVFEV QGENPLECKAPCESVPEASDLVEVSSHRLHLSKTEKADTFSICCWLQDQSEPSAGLQE DLKLILRQIELQLQGYGFGWEHVLYIHLYISDMNQFNLANETYVKFITQDKCPNGVPS RSTIELPLIQAGLGGAYIEVLVANDQSKRVLHVQSISCWAPSCIGPYSQGALVEVKPI LYVPETSETTEETLNDLSGVMTPSYFGFQPADWHDSCIQKFVIHGKICAVVLSITGAV ALKICSDSMNADWSNGNHRNYLTEGQMKRISRFCIYVLDKFIMENGFSWKDTMSLRFY YPPNLHVPLETLSLLFTDAFKELDQMSGSAKVGGKSIFNLVPVLGAGKSAACTEDIIT CELFARKS" CDS complement(join(36937300..36937515,36937769..36938127, 36938372..36938704,36938842..36939187,36939392..36939464, 36939575..36939657,36939830..36939862,36939952..36940177, 36940725..36940804,36941090..36941101)) /locus_tag="TCM_026179" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Meiotically up-regulated gene 71 protein isoform 5" /protein_id="EOY10896.1" /db_xref="Phytozome:POPTR_0013s04460.1" /db_xref="TAIR:AT3G04480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4J3Q1" /translation="MYQTVGHQIIVSYAECMGVPLFRRRIQGSTRHQKLSYRTTPGDE VEDMFILLNEVKKQIPSITAVSSGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLL LQEMITNGIVAITVKVAAMGLDPAKHLGKEIAFLKPYLHKLKDLYGINVCGEGGEYET LTFDCPLFHNARIMLDESQVVLHSSDSIAPVGVLHPLKFHLERKAKSNSISGNDKSND LYRENISSVFEVQGENPLECKAPCESVPEASDLVEVSSHRLHLSKTEKADTFSICCWL QDQSEPSAGLQEDLKLILRQIELQLQGYGFGWEHVLYIHLYISDMNQFNLANETYVKF ITQDKCPNGVPSRSTIELPLIQAGLGGAYIEVLVANDQSKRVLHVQSISCWAPSCIGP YSQGALVEVKPILYVPETSETTEETLNDLSGVMTPSYFGFQPADWHDSCIQKFVIHGK ICAVVLSITGAVALKICSDSMNADWSNGNHRNYLTEGQMKRISRFCIYVLDKFIMENG FSWKDTMSLRFYYPPNLHVPLETLSLLFTDAFKELDQMSGSAKVGGKSIFNLVPVLGA GKSAACTEDIITCELFARKS" CDS complement(join(36937300..36937515,36937769..36938127, 36938372..36938704,36938842..36939187,36939392..36939464, 36939575..36939657,36939830..36939862,36939952..36940177, 36940698..36940711)) /locus_tag="TCM_026179" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Meiotically up-regulated gene 71 protein isoform 2" /protein_id="EOY10893.1" /db_xref="Phytozome:POPTR_0013s04460.1" /db_xref="TAIR:AT3G04480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H602" /translation="MRILWHQKLSYRTTPGDEVEDMFILLNEVKKQIPSITAVSSGAI ASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGIVAITVKVAAMGLDPAKH LGKEIAFLKPYLHKLKDLYGINVCGEGGEYETLTFDCPLFHNARIMLDESQVVLHSSD SIAPVGVLHPLKFHLERKAKSNSISGNDKSNDLYRENISSVFEVQGENPLECKAPCES VPEASDLVEVSSHRLHLSKTEKADTFSICCWLQDQSEPSAGLQEDLKLILRQIELQLQ GYGFGWEHVLYIHLYISDMNQFNLANETYVKFITQDKCPNGVPSRSTIELPLIQAGLG GAYIEVLVANDQSKRVLHVQSISCWAPSCIGPYSQGALVEVKPILYVPETSETTEETL NDLSGVMTPSYFGFQPADWHDSCIQKFVIHGKICAVVLSITGAVALKICSDSMNADWS NGNHRNYLTEGQMKRISRFCIYVLDKFIMENGFSWKDTMSLRFYYPPNLHVPLETLSL LFTDAFKELDQMSGSAKVGGKSIFNLVPVLGAGKSAACTEDIITCELFARKS" CDS complement(join(36937300..36937515,36937769..36938127, 36938372..36938704,36938842..36939187,36939392..36939464, 36939575..36939657,36939830..36939862,36939952..36940177, 36940698..36940711)) /locus_tag="TCM_026179" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Meiotically up-regulated gene 71 protein isoform 2" /protein_id="EOY10894.1" /db_xref="Phytozome:POPTR_0013s04460.1" /db_xref="TAIR:AT3G04480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H602" /translation="MRILWHQKLSYRTTPGDEVEDMFILLNEVKKQIPSITAVSSGAI ASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGIVAITVKVAAMGLDPAKH LGKEIAFLKPYLHKLKDLYGINVCGEGGEYETLTFDCPLFHNARIMLDESQVVLHSSD SIAPVGVLHPLKFHLERKAKSNSISGNDKSNDLYRENISSVFEVQGENPLECKAPCES VPEASDLVEVSSHRLHLSKTEKADTFSICCWLQDQSEPSAGLQEDLKLILRQIELQLQ GYGFGWEHVLYIHLYISDMNQFNLANETYVKFITQDKCPNGVPSRSTIELPLIQAGLG GAYIEVLVANDQSKRVLHVQSISCWAPSCIGPYSQGALVEVKPILYVPETSETTEETL NDLSGVMTPSYFGFQPADWHDSCIQKFVIHGKICAVVLSITGAVALKICSDSMNADWS NGNHRNYLTEGQMKRISRFCIYVLDKFIMENGFSWKDTMSLRFYYPPNLHVPLETLSL LFTDAFKELDQMSGSAKVGGKSIFNLVPVLGAGKSAACTEDIITCELFARKS" CDS complement(join(36937300..36937515,36937769..36938127, 36938372..36938704,36938842..36939187,36939392..36939464, 36939575..36939657,36939830..36939862,36939952..36940190, 36940298..36940310)) /locus_tag="TCM_026179" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Meiotically up-regulated gene 71 protein isoform 1" /protein_id="EOY10892.1" /db_xref="Phytozome:POPTR_0013s04460.1" /db_xref="TAIR:AT3G04480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H602" /translation="MFGKSDYCRHQKLSYRTTPGDEVEDMFILLNEVKKQIPSITAVS SGAIASDYQRLRVESVCSRLGLVSLAYLWKQDQSLLLQEMITNGIVAITVKVAAMGLD PAKHLGKEIAFLKPYLHKLKDLYGINVCGEGGEYETLTFDCPLFHNARIMLDESQVVL HSSDSIAPVGVLHPLKFHLERKAKSNSISGNDKSNDLYRENISSVFEVQGENPLECKA PCESVPEASDLVEVSSHRLHLSKTEKADTFSICCWLQDQSEPSAGLQEDLKLILRQIE LQLQGYGFGWEHVLYIHLYISDMNQFNLANETYVKFITQDKCPNGVPSRSTIELPLIQ AGLGGAYIEVLVANDQSKRVLHVQSISCWAPSCIGPYSQGALVEVKPILYVPETSETT EETLNDLSGVMTPSYFGFQPADWHDSCIQKFVIHGKICAVVLSITGAVALKICSDSMN ADWSNGNHRNYLTEGQMKRISRFCIYVLDKFIMENGFSWKDTMSLRFYYPPNLHVPLE TLSLLFTDAFKELDQMSGSAKVGGKSIFNLVPVLGAGKSAACTEDIITCELFARKS" CDS complement(join(36937300..36937515,36937769..36938127, 36938372..36938704,36938842..36939175)) /locus_tag="TCM_026179" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Meiotically up-regulated gene 71 protein isoform 6" /protein_id="EOY10897.1" /db_xref="Phytozome:POPTR_0013s04460.1" /db_xref="TAIR:AT3G04480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H602" /translation="MLDESQVVLHSSDSIAPVGVLHPLKFHLERKAKSNSISGNDKSN DLYRENISSVFEVQGENPLECKAPCESVPEASDLVEVSSHRLHLSKTEKADTFSICCW LQDQSEPSAGLQEDLKLILRQIELQLQGYGFGWEHVLYIHLYISDMNQFNLANETYVK FITQDKCPNGVPSRSTIELPLIQAGLGGAYIEVLVANDQSKRVLHVQSISCWAPSCIG PYSQGALVEVKPILYVPETSETTEETLNDLSGVMTPSYFGFQPADWHDSCIQKFVIHG KICAVVLSITGAVALKICSDSMNADWSNGNHRNYLTEGQMKRISRFCIYVLDKFIMEN GFSWKDTMSLRFYYPPNLHVPLETLSLLFTDAFKELDQMSGSAKVGGKSIFNLVPVLG AGKSAACTEDIITCELFARKS" mobile_element complement(36942114..36942182) /note="source:scaffold_1_CACTA_0005 6285 6354" /mobile_element_type="transposon:TIR/CACTA" gene complement(36942272..36949115) /locus_tag="TCM_026181" /note="dbxref CacaoGD:Thecc1EG026181" mRNA complement(join(36942272..36943028,36943330..36943480, 36943599..36943724,36944127..36944283,36944835..36944944, 36945137..36945284,36945479..36945620,36946558..36946648, 36946751..36946856,36947199..36947298,36947380..36947485, 36947622..36947864,36948504..36949111)) /locus_tag="TCM_026181" /product="Calcium-binding EF-hand family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29680.m001700" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020907t2" /inference="similar to AA sequence:frave:gene16658" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10344t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10344t3" mRNA complement(join(36942507..36943028,36943330..36943483, 36944833..36944944,36945137..36945284,36945479..36945620, 36946558..36946648,36946751..36946856,36947199..36947298, 36947380..36947485,36947622..36947864,36948504..36949115)) /locus_tag="TCM_026181" /product="Calcium-binding EF-hand family protein isoform 5" /inference="alignment:exonerate- protein:2:ricco:29680.m001700" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020907t2" /inference="similar to AA sequence:frave:gene16658" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc307t12; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc307t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10344t3" mRNA complement(join(<36942953..36942982,36943652..36943724, 36944127..36944283,36944835..36944944,36945137..36945284, 36945479..36945620,36946558..36946648,36946751..36946856, 36947199..36947298,36947380..36947485,36947622..36947864, 36948504..36949115)) /locus_tag="TCM_026181" /product="Calcium-binding EF-hand family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29680.m001700" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020907t2" /inference="similar to AA sequence:frave:gene16658" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc307t11; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10344t3; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc307t8" CDS complement(join(<36942954..36942982,36943652..36943724, 36944127..36944283,36944835..36944944,36945137..36945284, 36945479..36945620,36946558..36946648,36946751..36946856, 36947199..36947298,36947380..36947485,36947622..36947864, 36948504..36948653)) /locus_tag="TCM_026181" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene16658; paralog of Thecc1EG020907t2" /codon_start=1 /product="Calcium-binding EF-hand family protein isoform 2" /protein_id="EOY10899.1" /db_xref="TAIR:AT5G28850.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XGR4" /translation="MEAVVVGDVACLDAELLQLQEMSPLALKSNPEFTQKLFEQWLSL PDTNKLVTSLVNDAKAGNPLNVHGNTSSGSTATSNSLPSMFPAGSAPPLSPRSTSGSP RITKQRVGPSNLGSPLKVVSEPMKELIPQFYFKNGRPPPNELKEQCMFRISQFFYGHP DGLQLHEFKLVTKEICKLPSFFSPSLFRKIDVNSTGLITRDAFIDYWVNGNMLTMDIA TQIYTILKQPDLTYLTQDDFKPVLRELLATHPGLEFLQSTPEFQERYAETVIYRIYYY INRSGNGHLTLRELKRGNLIDAMLHADEEEDINKVLRYFSYEHFYVIYCKFWELDTDH DFLIDKENLIRYGNHALTYQIVNRIFSQVPRKFTSKVEGKMGYEDFVYFILAEEDKPS EPSLEYWFKCIDLDGNGVITRNEMQFFYEEQLHRMECMAQEPVLFEDILCQIIDMIKP EDESYITLCDLKGSKLSGSVFNILFKRECQPRESG" CDS complement(join(36943340..36943480,36943599..36943724, 36944127..36944283,36944835..36944944,36945137..36945284, 36945479..36945620,36946558..36946648,36946751..36946856, 36947199..36947298,36947380..36947485,36947622..36947864, 36948504..36948653)) /locus_tag="TCM_026181" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene16658; paralog of Thecc1EG020907t2" /codon_start=1 /product="Calcium-binding EF-hand family protein isoform 1" /protein_id="EOY10898.1" /db_xref="TAIR:AT5G28850.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XGR4" /translation="MEAVVVGDVACLDAELLQLQEMSPLALKSNPEFTQKLFEQWLSL PDTNKLVTSLVNDAKAGNPLNVHGNTSSGSTATSNSLPSMFPAGSAPPLSPRSTSGSP RITKQRVGPSNLGSPLKVVSEPMKELIPQFYFKNGRPPPNELKEQCMFRISQFFYGHP DGLQLHEFKLVTKEICKLPSFFSPSLFRKIDVNSTGLITRDAFIDYWVNGNMLTMDIA TQIYTILKQPDLTYLTQDDFKPVLRELLATHPGLEFLQSTPEFQERYAETVIYRIYYY INRSGNGHLTLRELKRGNLIDAMLHADEEEDINKVLRYFSYEHFYVIYCKFWELDTDH DFLIDKENLIRYGNHALTYQIVNRIFSQVPRKFTSKVEGKMGYEDFVYFILAEEDKPS EPSLEYWFKCIDLDGNGVITRNEMQFFYEEQLHRMECMAQEPVLFEDILCQIIDMIKP EDESYITLCDLKGSKLSGSVFNILFNLNKFMAFETRDPFLIRQERENPTLTEWDRFAH REYIRLSMEEDVEDASNGSAEVWDESLEAPF" CDS complement(join(36943473..36943483,36944833..36944944, 36945137..36945284,36945479..36945620,36946558..36946648, 36946751..36946856,36947199..36947298,36947380..36947485, 36947622..36947864,36948504..36948653)) /locus_tag="TCM_026181" /note="encoded by transcript variant 5; alternatively spliced; dbxref frave:gene16658; paralog of Thecc1EG020907t2" /codon_start=1 /product="Calcium-binding EF-hand family protein isoform 5" /protein_id="EOY10902.1" /db_xref="TAIR:AT5G28850.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XGR4" /translation="MEAVVVGDVACLDAELLQLQEMSPLALKSNPEFTQKLFEQWLSL PDTNKLVTSLVNDAKAGNPLNVHGNTSSGSTATSNSLPSMFPAGSAPPLSPRSTSGSP RITKQRVGPSNLGSPLKVVSEPMKELIPQFYFKNGRPPPNELKEQCMFRISQFFYGHP DGLQLHEFKLVTKEICKLPSFFSPSLFRKIDVNSTGLITRDAFIDYWVNGNMLTMDIA TQIYTILKQPDLTYLTQDDFKPVLRELLATHPGLEFLQSTPEFQERYAETVIYRIYYY INRSGNGHLTLRELKRGNLIDAMLHADEEEDINKVLRYFSYEHFYVIYCKFWELDTDH DFLIDKENLIRYGNHALTYQIVNRIFSQVPRKFTSKVEGKMGYEDFVYFILAEEDKPS EPSLEYWSGA" mRNA complement(join(36944254..36944283,36944424..36944497, 36944835..36944944,36945137..36945284,36945479..36945620, 36946558..36946648,36946751..36946856,36947199..36947298, 36947380..36947485,36947622..36947864,36948504..36949115)) /locus_tag="TCM_026181" /product="Calcium-binding EF-hand family protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:29680.m001700" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020907t2" /inference="similar to AA sequence:frave:gene16658" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc308t10; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc307t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10344t3" mRNA complement(join(36944254..36944283,36944743..36944944, 36945137..36945284,36945479..36945620,36946558..36946648, 36946751..36946856,36947199..36947298,36947380..36947485, 36947622..36947864,36948504..36949115)) /locus_tag="TCM_026181" /product="Calcium-binding EF-hand family protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:29680.m001700" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020907t2" /inference="similar to AA sequence:frave:gene16658" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc307t6; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc307t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10344t3" CDS complement(join(36944497,36944835..36944944, 36945137..36945284,36945479..36945620,36946558..36946648, 36946751..36946856,36947199..36947298,36947380..36947485, 36947622..36947864,36948504..36948653)) /locus_tag="TCM_026181" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene16658; paralog of Thecc1EG020907t2" /codon_start=1 /product="Calcium-binding EF-hand family protein isoform 3" /protein_id="EOY10900.1" /db_xref="TAIR:AT5G28850.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XGR4" /translation="MEAVVVGDVACLDAELLQLQEMSPLALKSNPEFTQKLFEQWLSL PDTNKLVTSLVNDAKAGNPLNVHGNTSSGSTATSNSLPSMFPAGSAPPLSPRSTSGSP RITKQRVGPSNLGSPLKVVSEPMKELIPQFYFKNGRPPPNELKEQCMFRISQFFYGHP DGLQLHEFKLVTKEICKLPSFFSPSLFRKIDVNSTGLITRDAFIDYWVNGNMLTMDIA TQIYTILKQPDLTYLTQDDFKPVLRELLATHPGLEFLQSTPEFQERYAETVIYRIYYY INRSGNGHLTLRELKRGNLIDAMLHADEEEDINKVLRYFSYEHFYVIYCKFWELDTDH DFLIDKENLIRYGNHALTYQIVNRIFSQVPRKFTSKVEGKMGYEDFVYFILAEEDKPS EPSLEY" CDS complement(join(36944765..36944944,36945137..36945284, 36945479..36945620,36946558..36946648,36946751..36946856, 36947199..36947298,36947380..36947485,36947622..36947864, 36948504..36948653)) /locus_tag="TCM_026181" /note="encoded by transcript variant 4; alternatively spliced; dbxref frave:gene16658; paralog of Thecc1EG020907t2" /codon_start=1 /product="Calcium-binding EF-hand family protein isoform 4" /protein_id="EOY10901.1" /db_xref="TAIR:AT5G28850.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9XGR4" /translation="MEAVVVGDVACLDAELLQLQEMSPLALKSNPEFTQKLFEQWLSL PDTNKLVTSLVNDAKAGNPLNVHGNTSSGSTATSNSLPSMFPAGSAPPLSPRSTSGSP RITKQRVGPSNLGSPLKVVSEPMKELIPQFYFKNGRPPPNELKEQCMFRISQFFYGHP DGLQLHEFKLVTKEICKLPSFFSPSLFRKIDVNSTGLITRDAFIDYWVNGNMLTMDIA TQIYTILKQPDLTYLTQDDFKPVLRELLATHPGLEFLQSTPEFQERYAETVIYRIYYY INRSGNGHLTLRELKRGNLIDAMLHADEEEDINKVLRYFSYEHFYVIYCKFWELDTDH DFLIDKENLIRYGNHALTYQIVNRIFSQVPRKFTSKVEGKMGYEDFVYFILAEEDKPS EPSLEYWYILCSFSVDSRVLWILCTDYRV" gene complement(36949216..36956835) /locus_tag="TCM_026183" /note="dbxref CacaoGD:Thecc1EG026183" mRNA complement(join(36949216..36949367,36950477..36951354, 36951575..36951708,36952016..36952079,36952157..36952230, 36952872..36952998,36953115..36953199,36953303..36953366, 36953465..36953526,36953956..36954026,36954822..36954917, 36955009..36955157,36955284..36955353,36956115..36956155, 36956243..36956440,36956801..36956835)) /locus_tag="TCM_026183" /product="Casein kinase I isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400044242.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003981t1" /inference="similar to AA sequence:Phytozome:GSVIVT01027835001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10349t2" CDS complement(join(36951070..36951354,36951575..36951708, 36952016..36952079,36952157..36952230,36952872..36952998, 36953115..36953199,36953303..36953366,36953465..36953526, 36953956..36954026,36954822..36954917,36955009..36955157, 36955284..36955353,36956115..36956155,36956243..36956318)) /locus_tag="TCM_026183" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG003981t1" /codon_start=1 /product="Casein kinase I isoform 1" /protein_id="EOY10903.1" /db_xref="Phytozome:GSVIVT01027835001" /db_xref="TAIR:AT4G14340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LPJ1" /translation="MDHIVGGKFKMGRKIGAGSFGELFLGVNIQTGEEVAVKMEPVKT KHPQLHYESKLYMLLQGGTGVPHLKWFGVEGDYNIMVIELLGPSLEDLFNYCNRKLSL KTVLMLADQLINRVEFMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQ THKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKA GTKKQKYDKISEKKMLTPVEVLCKSHPSEFISYFHYCRSLRFEDKPDYSYLKRLFRDL FIREGYQFDYVFDWTILKYPQLTGSSRQRPSGGKAALNAGPSAERTEKPSVGREIRDR FSGAVEVFTRKNASGSGHLSDHSKQKVSERASPSKDVDNDSGRGQTSSTRPSSLSKRA VASSSRPASSVGPSDSRSSWLLSGSSRLSTSQRLHSGSEHKSSLSRATTSKGIREDQN KSSDHHSRVTDKRKG" mRNA complement(join(<36951180..36951354,36951575..36951708, 36952016..36952079,36952157..36952230,36952872..36952998, 36953115..36953199,36953303..36953366,36953465..36953526, 36953956..36954026,36954822..36955157,36955284..36955353, 36956115..36956155,36956243..36956690)) /locus_tag="TCM_026183" /product="Casein kinase I isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400044242.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003981t1" /inference="similar to AA sequence:Phytozome:GSVIVT01027835001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc284t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10349t2" CDS complement(join(<36951181..36951354,36951575..36951708, 36952016..36952079,36952157..36952230,36952872..36952998, 36953115..36953199,36953303..36953366,36953465..36953526, 36953956..36954026,36954822..36954899)) /locus_tag="TCM_026183" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG003981t1" /codon_start=1 /product="Casein kinase I isoform 2" /protein_id="EOY10904.1" /db_xref="Phytozome:GSVIVT01027835001" /db_xref="TAIR:AT4G14340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LPJ1" /translation="MHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTH KHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGT KKQKYDKISEKKMLTPVEVLCKSHPSEFISYFHYCRSLRFEDKPDYSYLKRLFRDLFI REGYQFDYVFDWTILKYPQLTGSSRQRPSGGKAALNAGPSAERTEKPSVGREIRDRFS GAVEVFTRKNASGSGHLSDHSKQKVSERASPSKDVDNDSGRGQTSSTRPSSLSKRAVA SSSRPASSVGPSDSRSSWLLSGSSRLSTSQRLHSG" gene 36956923..36961858 /locus_tag="TCM_026184" /note="dbxref CacaoGD:Thecc1EG026184" mRNA join(36956923..36957048,36957625..36957984, 36958506..36958707,36959157..36959225,36959547..36959624, 36959806..36959895,36960340..36960576,36960668..36961006) /locus_tag="TCM_026184" /product="Prenylyltransferase superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01023502001" /inference="similar to AA sequence:Phytozome:POPTR_0013s04420.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1547t4; inference alignment:Newbler:10:TSA:cgbaL_g00193t00001" mRNA join(36956943..36957048,36957625..36957984, 36958506..36958707,36959157..36959225,36959547..36959624, 36959806..36959895,36960061..36960111,36960340..36960576, 36960668..36960806,36961439..36961858) /locus_tag="TCM_026184" /product="Prenylyltransferase superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01023502001" /inference="similar to AA sequence:Phytozome:POPTR_0013s04420.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00193t00001; inference alignment:Newbler:10:TSA:cgbaL_g00193t00001" mRNA join(36956943..36957048,36957625..36957984, 36958506..36958707,36959157..36959225,36959547..36959624, 36959806..36960202) /locus_tag="TCM_026184" /product="Prenylyltransferase superfamily protein, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01023502001" /inference="similar to AA sequence:Phytozome:GSVIVT01023502001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00193t00003; inference alignment:Newbler:10:TSA:cgbaL_g00193t00001" CDS join(36956966..36957048,36957625..36957984, 36958506..36958707,36959157..36959225,36959547..36959624, 36959806..36959895,36960061..36960111,36960340..36960576, 36960668..36960799) /locus_tag="TCM_026184" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Prenylyltransferase superfamily protein, putative isoform 1" /protein_id="EOY10905.1" /db_xref="Phytozome:POPTR_0013s04420.1" /db_xref="TAIR:AT1G10095.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5P0" /translation="MYGNSWDEDRAMDLLNQLEAILESDPLIDEVGFIHPSQFVTLCK EGGESGDSSEDDVLGPRNTKFWNRDHKLGISTEVLLPLCKAAKGAFMDAMKQYRTLNS LSNNKHEHENIMYGSLSRQSFDSEIMKHSRALLLLSCDFGTAWNSRKLVVSKKQQLAM LMDELLLSALVLSYSPKSEQAWSHRRWVIKMIAGKCSTMPEIITKESELVEKIAERSK MNYRAWNHRCWLVSYMTREQMLHELKKSRDWAGLHVADNSCFHYRRRLMLGILKNSCC KQECDDSSYDVENYQVVKEELDWNEVLIKRYVGREALWLHRRFLSQCSISHLTMNMHG ISSQSEQKTSMDNEISIFMHNELCLLNSCSTIQDMEFEDFQAQAMYSAIYYLWLIKLI PQFRESEVQVKLKAGNLKTILHKTCPERSFLWDFLDLNGSL" CDS join(36956966..36957048,36957625..36957984, 36958506..36958707,36959157..36959225,36959547..36959624, 36959806..36959895,36960340..36960576,36960668..36960799) /locus_tag="TCM_026184" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Prenylyltransferase superfamily protein, putative isoform 2" /protein_id="EOY10906.1" /db_xref="Phytozome:POPTR_0013s04420.1" /db_xref="TAIR:AT1G10095.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5P0" /translation="MYGNSWDEDRAMDLLNQLEAILESDPLIDEVGFIHPSQFVTLCK EGGESGDSSEDDVLGPRNTKFWNRDHKLGISTEVLLPLCKAAKGAFMDAMKQYRTLNS LSNNKHEHENIMYGSLSRQSFDSEIMKHSRALLLLSCDFGTAWNSRKLVVSKKQQLAM LMDELLLSALVLSYSPKSEQAWSHRRWVIKMIAGKCSTMPEIITKESELVEKIAERSK MNYRAWNHRCWLVSYMTREQMLHELKKSRDWAGLHVADNSCFHYRRRLMLGILKNSCC KQECDDSSYDVENYQVVKALWLHRRFLSQCSISHLTMNMHGISSQSEQKTSMDNEISI FMHNELCLLNSCSTIQDMEFEDFQAQAMYSAIYYLWLIKLIPQFRESEVQVKLKAGNL KTILHKTCPERSFLWDFLDLNGSL" CDS join(36956966..36957048,36957625..36957984, 36958506..36958707,36959157..36959225,36959547..36959624, 36959806..36959997) /locus_tag="TCM_026184" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Prenylyltransferase superfamily protein, putative isoform 4" /protein_id="EOY10908.1" /db_xref="Phytozome:GSVIVT01023502001" /db_xref="TAIR:AT1G10095.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5P0" /translation="MYGNSWDEDRAMDLLNQLEAILESDPLIDEVGFIHPSQFVTLCK EGGESGDSSEDDVLGPRNTKFWNRDHKLGISTEVLLPLCKAAKGAFMDAMKQYRTLNS LSNNKHEHENIMYGSLSRQSFDSEIMKHSRALLLLSCDFGTAWNSRKLVVSKKQQLAM LMDELLLSALVLSYSPKSEQAWSHRRWVIKMIAGKCSTMPEIITKESELVEKIAERSK MNYRAWNHRCWLVSYMTREQMLHELKKSRDWAGLHVADNSCFHYRRRLMLGILKNSCC KQECDDSSYDVENYQVVKVQLCGILMLIKLPISCLYQESIPHMICICFIDH" mRNA join(<36957023..36957048,36957625..36957984, 36958506..36958707,36959157..36959225,36959547..36959624, 36959806..36959895,36960061..36960363) /locus_tag="TCM_026184" /product="Prenylyltransferase superfamily protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01023502001" /inference="similar to AA sequence:Phytozome:POPTR_0013s04420.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1566t9; inference alignment:Newbler:10:TSA:cgbaL_g00193t00001" CDS join(<36957023..36957048,36957625..36957984, 36958506..36958707,36959157..36959225,36959547..36959624, 36959806..36959895,36960061..36960165) /locus_tag="TCM_026184" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Prenylyltransferase superfamily protein, putative isoform 3" /protein_id="EOY10907.1" /db_xref="Phytozome:POPTR_0013s04420.1" /db_xref="TAIR:AT1G10095.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5P0" /translation="AILESDPLIDEVGFIHPSQFVTLCKEGGESGDSSEDDVLGPRNT KFWNRDHKLGISTEVLLPLCKAAKGAFMDAMKQYRTLNSLSNNKHEHENIMYGSLSRQ SFDSEIMKHSRALLLLSCDFGTAWNSRKLVVSKKQQLAMLMDELLLSALVLSYSPKSE QAWSHRRWVIKMIAGKCSTMPEIITKESELVEKIAERSKMNYRAWNHRCWLVSYMTRE QMLHELKKSRDWAGLHVADNSCFHYRRRLMLGILKNSCCKQECDDSSYDVENYQVVKE ELDWNEVLIKRYVGREVQGFLPIPFPSSNKRNG" gene 36961510..36964499 /locus_tag="TCM_026185" /note="dbxref CacaoGD:Thecc1EG026185" mRNA join(36961510..36961576,36962071..36964499) /locus_tag="TCM_026185" /product="Pentatricopeptide repeat (PPR-like) superfamily protein" /inference="alignment:exonerate- protein:2:ricco:29680.m001697" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034554t1" /inference="similar to AA sequence:ricco:29680.m001697" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.92 coverage" CDS 36962386..36964146 /locus_tag="TCM_026185" /note="dbxref ricco:29680.m001697; paralog of Thecc1EG034554t1" /codon_start=1 /product="Pentatricopeptide repeat (PPR-like) superfamily protein" /protein_id="EOY10909.1" /db_xref="TAIR:AT3G04760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SR00" /translation="MTLFSTELVTHSLPFTTQQLKPTSNSHSHHTSLVSCLNHESQDS SSKSRNNQKVRVSAETRPTHLLSFDFKETHLMKLLNRSCKAGKYNEAFYFLECMVGKG YKPDVVLCTKMIKGFFNGRNVEKATRVIEILEKYGEPDVFAYNAIISGFCKMNRLDFA NKVLDRMRSRGFSPDVVTYNIMIGSFCSRGKLDSAYKVINQLLKDNCKPSVITYTILI EATMLQGEINEAMKLLDEMLSKGLRPDMFTYNAIIRGMCKDGMVNRAFKFVRSLKARG CQPDVISYNILLRVLLNQGKWAEGEKLVTEMVSRGCEPNVVTYSILISSLCREGKLEE AVNVLKMMKERGLTPDAYSYDPLISAFCKEGRLDLAIEFLDCMISDGCLPDIVNYNTV LATLCKNGKAEQALEIFEKLREVGCPPNVSSYNTMFSALWSSGDKVKALEMISEMLSK RIGPDEITYNSLISCLCRDGMVDEAIELLVDMGCSGIPPTVISYNIVLLGLCKVHRIN DAIEVLAAMVDKRCQPNETTYILLIEGIGFAGWRSEAMELANALFRMEAISKDSFKRL NRTFPLLDVYKEFAGSDSNK" gene complement(36964762..36968201) /locus_tag="TCM_026186" /note="dbxref CacaoGD:Thecc1EG026186" mRNA complement(join(36964762..36967167,36968012..36968201)) /locus_tag="TCM_026186" /product="Pentatricopeptide repeat superfamily protein, putative" /inference="similar to AA sequence:frave:gene16660" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10327t1" CDS complement(36965136..36966923) /locus_tag="TCM_026186" /note="dbxref frave:gene16660" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein, putative" /protein_id="EOY10910.1" /db_xref="TAIR:AT1G08610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FRS4" /translation="MGYAATPRSSPVEICHFHGSPWGLKQPGLCCSSWKYSTVKVSTC HFTCSIKYSRRSQSCLPWKVDNGSEREAFSLQFRALQRSVCIDRNEIDQDEWGRSEDH ISRVKRKFKEQINSKKLPNSVTSVFDGPFVRNDEETNNNILQKFCSNGRLKDASRLIE IMARQNQIPHFPSCINLIRGFLKVDELDKAAKVLQVMIMSGGVPDNITYNMMVRGLCK RGWIRAAIDLLEDMSLSGCPPDVITYNTIIRCMFDNGIFDQAVGFWKDQLRKGCPPYL ITYTILIELVCKHCGTVRAMEVLDDMAIEGCYPDIVTYNSLVNFTCKRGKYEDAALVI YNIISHGMEPNAITYNTLIHSLSSHGCWDEVDEILAIMKETSHPPTVVTYNILINGLC KYGLLERAINFFDQMVSQNCSPDIVTYNTLLGALSKEGMVEEALQLLQFLSGSSCSPG LITYNTVIDGLTRSGDMEKAMGLYNKMLEDRISPDDITHRCLVWGFCRADQFERAVET LRVMGEREHRVGNSAYKMVIHGLCKKEKVDLAIQVLEMMVSSRCKPDETTCWTIIKGI ADAGMMEEANKLRQKLMEWKVFRERTLLS" gene 36968321..36984136 /locus_tag="TCM_026187" /note="dbxref CacaoGD:Thecc1EG026187" mRNA join(36968321..36968642,36968770..36968857, 36969667..36969775,36969956..36970054,36970316..36970358, 36970783..36970854,36970950..36971045,36971175..36971411, 36971729..36971912,36972628..36972739,36972831..36972917, 36973021..36973159,36973281..36973377,36973487..36973549, 36973705..36973814,36973960..36974064,36974630..36974703, 36974836..36974911,36974991..36975218,36975661..36975732, 36976212..36976283,36976364..36976428,36976521..36976623, 36976710..36976841,36977284..36977427,36978715..36978822, 36978893..36978943,36979009..36979086,36979161..36979274, 36979507..36979674,36980170..36981560,36981663..36981748, 36981924..36982019,36982934..36983026,36983142..36983330, 36983855..36984136) /locus_tag="TCM_026187" /product="T27c4.14 protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29680.m001694" /inference="similar to AA sequence:Phytozome:GSVIVT01023507001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc311t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10634t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc320t14" mRNA join(36968368..36968642,36968770..36968857, 36969667..36969775,36969956..36970054,36970316..36970358, 36970783..36970854,36970950..36971045,36971175..36971411, 36971729..36971912,36972628..36972739,36972831..36972917, 36973021..36973159,36973281..36973377,36973487..36973549, 36973705..36973814,36973960..36974064,36974630..36974703, 36974836..36974911,36974991..36975218,36975661..36975732, 36976212..36976283,36976364..36976428,36976521..36976623, 36976710..36976841,36977284..36977427,36978715..36978822, 36978893..36978946,36979009..36979086,36979161..36979274, 36979504..36979691,36979814..36979886,36980172..36983031) /locus_tag="TCM_026187" /product="T27c4.14 protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29680.m001694" /inference="similar to AA sequence:Phytozome:GSVIVT01023507001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10634t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10634t1" CDS join(36968544..36968642,36968770..36968857, 36969667..36969775,36969956..36970054,36970316..36970358, 36970783..36970854,36970950..36971045,36971175..36971411, 36971729..36971912,36972628..36972739,36972831..36972917, 36973021..36973159,36973281..36973377,36973487..36973549, 36973705..36973814,36973960..36974064,36974630..36974703, 36974836..36974911,36974991..36975218,36975661..36975732, 36976212..36976283,36976364..36976428,36976521..36976623, 36976710..36976841,36977284..36977427,36978715..36978822, 36978893..36978946,36979009..36979086,36979161..36979274, 36979504..36979691,36979814..36979886,36980172..36980360) /locus_tag="TCM_026187" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="T27c4.14 protein isoform 1" /protein_id="EOY10911.1" /db_xref="Phytozome:GSVIVT01023507001" /db_xref="TAIR:AT3G04490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H612" /translation="MQGFSDGGAGAGANLAQLQSTMHTIEVACSSIQMHINPTAAEAT ILSLSQSPQPYKACQYILENSQVANARFQAAAAIQDAAIREWGFLSIEDRRSLISFCL CFAMQHASSLEGYVQAKVSSVAAQLMKRGWLDFTAAEKEAFFYQVNQAILGAHGVDVQ FIGVHFLESLVSEFSPSTSSAMGLPREFHEQCRTSLELNYLKTFYCWTRDAALSVTNK IIESDAAIPEVKVCTAALCLMLQILNWEFRHDTNSMKAGISVFSAGVRHDSASSKRSE CVLVQPGPAWCDVLISSGHVGWLLGLYAALRQKFSREGYWLDCPIAVSARKLIVQFCS LTGTIFPSDNGKMQENLLLQLLSGILQWIDPPGAVSKAIEEGKSESEMLDGCRALLSI ATVTTSFVFDQLLKSLRPFGTLTLLSTLMCEVVKVLMTNNTDEETWSWEARDILLDTW TILLVPMDSNGGDALLPPEGKHAAANLFSMIVESELKVASASVANDDGDSDYLQASIS AMDERLSSYALIARAAVDVTIPLLTGLFSERFARLHQGRGIMDPTETLEELYSLLLIT GHVLADEGDGETPLVPTAIQTHFADIVEAENHPVVILSGSIIRFAEQSMDHEMRVTVF SPRLMEAVIWFLARWSHTYLMPLEEANCHLSHDYEHQHQSIHSRKALLSFFGEHNQGQ IVLNIIVHISMMTLMSYPGEKDLQGLTCHHLLHTLVRRKNICHQLVSMDSWRDLANAF TNEKSLFLLSSANQRSLAQTLVLSASGLRNSEASNQYVRGLMVHMTTYLVELSNKNDL KSVSQQPDVIMSVCCLLERLRGAASAAEPRTQRSIYEMGISVMNPVLILLEVYKHESA VVYLLLKFIVDWVDGQISYLEAQETASVIDFCMRLLQLYSSQNIGKISVSLSSTLLSE AKTEKYKDLRALLQLLSSLCSKDLVDFSSDSIEVAGTNISQVVVYFGLHIVTPLISLE LLKYPKLCHDYFSLLSHILEVYPETLAQLNSEAFAHILGTLDFGLHHQQDAEVVNMCL GALRALASYHYREMCAGKTGLGSHAAAQGNLPEGIFSRFLRSLLQLLLFEDYSSPDLV GAAADALLPLILCEQGLYQRLGNELIERQANSTLKSRLANALHSLTSSNHLSSTLDRV NYQRFRKNLNSFLIEVRGFLRTM" CDS join(36968544..36968642,36968770..36968857, 36969667..36969775,36969956..36970054,36970316..36970358, 36970783..36970854,36970950..36971045,36971175..36971411, 36971729..36971912,36972628..36972739,36972831..36972917, 36973021..36973159,36973281..36973377,36973487..36973549, 36973705..36973814,36973960..36974064,36974630..36974703, 36974836..36974911,36974991..36975218,36975661..36975732, 36976212..36976283,36976364..36976428,36976521..36976623, 36976710..36976841,36977284..36977427,36978715..36978822, 36978893..36978943,36979009..36979086,36979161..36979274, 36979507..36979674,36980170..36980178) /locus_tag="TCM_026187" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="T27c4.14 protein isoform 2" /protein_id="EOY10912.1" /db_xref="Phytozome:GSVIVT01023507001" /db_xref="TAIR:AT3G04490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H612" /translation="MQGFSDGGAGAGANLAQLQSTMHTIEVACSSIQMHINPTAAEAT ILSLSQSPQPYKACQYILENSQVANARFQAAAAIQDAAIREWGFLSIEDRRSLISFCL CFAMQHASSLEGYVQAKVSSVAAQLMKRGWLDFTAAEKEAFFYQVNQAILGAHGVDVQ FIGVHFLESLVSEFSPSTSSAMGLPREFHEQCRTSLELNYLKTFYCWTRDAALSVTNK IIESDAAIPEVKVCTAALCLMLQILNWEFRHDTNSMKAGISVFSAGVRHDSASSKRSE CVLVQPGPAWCDVLISSGHVGWLLGLYAALRQKFSREGYWLDCPIAVSARKLIVQFCS LTGTIFPSDNGKMQENLLLQLLSGILQWIDPPGAVSKAIEEGKSESEMLDGCRALLSI ATVTTSFVFDQLLKSLRPFGTLTLLSTLMCEVVKVLMTNNTDEETWSWEARDILLDTW TILLVPMDSNGGDALLPPEGKHAAANLFSMIVESELKVASASVANDDGDSDYLQASIS AMDERLSSYALIARAAVDVTIPLLTGLFSERFARLHQGRGIMDPTETLEELYSLLLIT GHVLADEGDGETPLVPTAIQTHFADIVEAENHPVVILSGSIIRFAEQSMDHEMRVTVF SPRLMEAVIWFLARWSHTYLMPLEEANCHLSHDYEHQHQSIHSRKALLSFFGEHNQGQ IVLNIIVHISMMTLMSYPGEKDLQGLTCHHLLHTLVRRKNICHQLVSMDSWRDLANAF TNEKSLFLLSSANQRSLAQTLVLSASGLRNSEASNQYVRGLMVHMTTYLVELSNKNDL KSVSQQPDVIMSVCCLLERLRGAASAAEPRTQRSIYEMGISVMNPVLILLEVYKHESA VVYLLLKFIVDWVDGQISYLEAQETASVIDFCMRLLQLYSSQNIGKISVSLSSTLLSE AKTEKYKDLRALLQLLSSLCSKDLVDFSSDSIEVAGTNISQVVYFGLHIVTPLISLEL LKYPKLCHDYFSLLSHILEVYPETLAQLNSEAFAHILGTLDFGLHHQDAEVVNMCLGA LRALASYHYREMCAGKTGLGSHAAAQGNLPEGIFSRFLRSLLQLLRD" mRNA join(36972714..36972739,36972831..36972917, 36973021..36973159,36973281..36973377,36973487..36973549, 36973705..36973814,36973960..36974064,36974630..36974703, 36974836..36974911,36974991..36975218,36975661..36975732, 36976212..36976283,36976364..36976428,36976521..36976623, 36976710..36976841,36977284..36977427,36978715..36978822, 36978893..36978943,36979009..36979086,36979161..36979274, 36979507..36979691,36979817..36979886,36980172..36981435, 36981925..36982019,36982934..36983031,36983149..36983401) /locus_tag="TCM_026187" /product="T27c4.14 protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:29680.m001694" /inference="similar to AA sequence:Phytozome:GSVIVT01023507001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc320t16; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc320t14; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10634t1" CDS join(36972835..36972917,36973021..36973159, 36973281..36973377,36973487..36973549,36973705..36973814, 36973960..36974064,36974630..36974703,36974836..36974911, 36974991..36975218,36975661..36975732,36976212..36976283, 36976364..36976428,36976521..36976623,36976710..36976841, 36977284..36977427,36978715..36978822,36978893..36978943, 36979009..36979086,36979161..36979274,36979507..36979691, 36979817..36979886,36980172..36980360) /locus_tag="TCM_026187" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="T27c4.14 protein isoform 3" /protein_id="EOY10913.1" /db_xref="Phytozome:GSVIVT01023507001" /db_xref="TAIR:AT3G04490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H612" /translation="MLDGCRALLSIATVTTSFVFDQLLKSLRPFGTLTLLSTLMCEVV KVLMTNNTDEETWSWEARDILLDTWTILLVPMDSNGGDALLPPEGKHAAANLFSMIVE SELKVASASVANDDGDSDYLQASISAMDERLSSYALIARAAVDVTIPLLTGLFSERFA RLHQGRGIMDPTETLEELYSLLLITGHVLADEGDGETPLVPTAIQTHFADIVEAENHP VVILSGSIIRFAEQSMDHEMRVTVFSPRLMEAVIWFLARWSHTYLMPLEEANCHLSHD YEHQHQSIHSRKALLSFFGEHNQGQIVLNIIVHISMMTLMSYPGEKDLQGLTCHHLLH TLVRRKNICHQLVSMDSWRDLANAFTNEKSLFLLSSANQRSLAQTLVLSASGLRNSEA SNQYVRGLMVHMTTYLVELSNKNDLKSVSQQPDVIMSVCCLLERLRGAASAAEPRTQR SIYEMGISVMNPVLILLEVYKHESAVVYLLLKFIVDWVDGQISYLEAQETASVIDFCM RLLQLYSSQNIGKISVSLSSTLLSEAKTEKYKDLRALLQLLSSLCSKDLVDFSSDSIE VAGTNISQVVYFGLHIVTPLISLELLKYPKLCHDYFSLLSHILEVYPETLAQLNSEAF AHILGTLDFGLHHQDAEVVNMCLGALRALASYHYREMCAGKTGLGSHAAAQGNLPEGI FSRFLRSLLQLLLFEDYSPDLVGAAADALLPLILCEQGLYQRLGNELIERQANSTLKS RLANALHSLTSSNHLSSTLDRVNYQRFRKNLNSFLIEVRGFLRTM" gene complement(36981113..36984197) /locus_tag="TCM_026188" /note="dbxref CacaoGD:Thecc1EG026188" mRNA complement(join(36981113..36981559,36981662..36981747, 36981923..36982019,36982934..36983031,36983149..36983326, 36983850..36984197)) /locus_tag="TCM_026188" /product="RNA-binding family protein" /inference="alignment:exonerate- protein:2:ricco:29680.m001693" /inference="similar to AA sequence:Phytozome:POPTR_0019s03570.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g02180t00001_C2" CDS complement(join(36981506..36981559,36981662..36981747, 36981923..36982019,36982934..36983031,36983149..36983326, 36983850..36984077)) /locus_tag="TCM_026188" /codon_start=1 /product="RNA-binding family protein" /protein_id="EOY10914.1" /db_xref="Phytozome:POPTR_0019s03570.1" /db_xref="TAIR:AT3G04500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5N8" /translation="MSIPPSSATTPSSSSSSQFTYQTTANPSYFPLPFHLQQQAQPYA PPAQPVPVAPAPVYPAPVAPVPGVYSLPQYQQAQQLFQRDAQIVTPEALESVKAALAS SEIEHKAETKKKVIPRKAAGQSWEDPTLAEWPENDFRLFCGDLGNEVNDDVLSKAFAR FPSFNMARVVRDKRTGKTKGYGFVSFANPSDLAAALKEMNGKYVGNRPIKLRKSNWKE RIDQEALERQRNQNQKKPKPQKKGILHK" gene 36988039..36999152 /locus_tag="TCM_026189" /note="dbxref CacaoGD:Thecc1EG026189" mRNA join(36988039..36988389,36990190..36990284, 36990371..36990690,36990864..36990935,36991322..36991399, 36991536..36992063,36992534..36992758,36993321..36993482, 36994153..36994521,36995166..36996564,36996660..36996763, 36997385..36997582,36997969..36999152) /locus_tag="TCM_026189" /product="Transcription factor jumonji family protein / zinc finger family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s04370.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s04370.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10364t3" mRNA join(36988760..36988975,36990190..36990284, 36990371..36990690,36990864..36990935,36991322..36991399, 36991536..36992063,36992534..36992758,36993321..36993482, 36994153..36994521,36995166..36996564,36996660..36996763, 36997385..36997582,36997969..36999044) /locus_tag="TCM_026189" /product="Transcription factor jumonji family protein / zinc finger family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s04370.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s04370.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10364t3; alternateUTRof:Thecc1EG026189t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10364t3" CDS join(36990376..36990690,36990864..36990935, 36991322..36991399,36991536..36992063,36992534..36992758, 36993321..36993482,36994153..36994521,36995166..36996564, 36996660..36996763,36997385..36997582,36997969..36998301) /locus_tag="TCM_026189" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Transcription factor jumonji family protein / zinc finger family protein isoform 1" /protein_id="EOY10915.1" /db_xref="Phytozome:POPTR_0013s04370.1" /db_xref="TAIR:AT1G08620.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H616" /translation="MGTELMRVCVKEENDDIPSVPPGFESYASFTLKRAQDTEKQESD NVMCCSAPASTSETSPVKKETELGNRGNAKITRSLRRRPWINYGRYDNSSEEEPDCGK LDQNLRLRLNLPKGVIRGCPECNDCQKVTARWRPEEACRPDLEDAPVFYPTEEEFEDT LKYIASIRPRAEQYGICRIVPPSSWKPPCPLKEKNVWENSRFTTRVQRVDKLQNRDSM RKMSKVNNNMRRKRRRCMRMAVDCGSDSGSISGSADAGFCEVERFGFEPGPEFTLEKF QKYADDFKAQYLRRRENGVDMEGRMTILQEHPEPSVENIEGEYWRVVEKATEEIEVLY GADLETGVFGSGFPKKPSQVEFVSNEKYIKSGWNLNNFPRLPGSVLSYESSDISGVLV PWLYVGMCFSSFCWHVEDHHLYSLNYMHWGAPKIWYGVPGKDASKLEEAMRKHLPDLF DEQPDLLHKLVTQLSPSILKYEGVPVYRCVQNAGEFVLTFPRAYHAGFNCGFNCAEAV NVAPVDWLPHGQIAIELYREQGRKTSISHDKLLLGAAREAVKALWELNLLKKYTSDNI RWKDMCGKDGVLAKTLKMRVEMEHRGREVLCSSSLAVKMESNFDATSERECSICFFDL HLSAAGCHCSPDRYACLNHAKQFCSCARGAKIFLFRYDINELNILVEALEGKLSAVYR WARLDLGLALSSYVSRDNMLGAKLSHALEVIPKGVQSQPSVNSVKDLPGEEMSKDKPL ILAQISAQMLLLQRNKLPEAALPSKVSNAKLKKEETILSASNLRMPVCHFSQEHRPST GGETAVESRVKKPSAPADDNIILLSDDEGDEPKKPVSERPKEHFITKQSDVSLRLAPS GEAITCNFNNEPILTIPLTDAAVMNQRDASSPDVQRNSCSSHYSQVKDEHAGNDITLF GYNHQNISCHLDSAIAESGRNVQDSCNSTEMYNINNNLVTVESNLQHLLPLESEKANK DKFEKLGAIASSNLVDNAKANVGGPSCSQNNLDRNFRQKGPRIAKVVRRINCNVEPLE FGVVLSGNFWCNSQAIFPKGFKSRVRYINVLDPTNMAYYVSEILDAGRDGPLFMVSVE HCPSEVFIHVSAARCWEMVREKVNQEITKQHRLGRTNLPPLQPPGSLDGFEMFGFSSP AIVQAVEAIDRNRVCTEYWDSRPYSRPRVQILQHSQLPDNGGNLFRTSGEQSNAGDPR NNCLPGGVDTILRGLFKKANSEELHLLCSILSDKRPPVDVDRVARLLNEEIHRRPG" CDS join(36990376..36990690,36990864..36990935, 36991322..36991399,36991536..36992063,36992534..36992758, 36993321..36993482,36994153..36994521,36995166..36996564, 36996660..36996763,36997385..36997582,36997969..36998301) /locus_tag="TCM_026189" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Transcription factor jumonji family protein / zinc finger family protein isoform 1" /protein_id="EOY10916.1" /db_xref="Phytozome:POPTR_0013s04370.1" /db_xref="TAIR:AT1G08620.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H616" /translation="MGTELMRVCVKEENDDIPSVPPGFESYASFTLKRAQDTEKQESD NVMCCSAPASTSETSPVKKETELGNRGNAKITRSLRRRPWINYGRYDNSSEEEPDCGK LDQNLRLRLNLPKGVIRGCPECNDCQKVTARWRPEEACRPDLEDAPVFYPTEEEFEDT LKYIASIRPRAEQYGICRIVPPSSWKPPCPLKEKNVWENSRFTTRVQRVDKLQNRDSM RKMSKVNNNMRRKRRRCMRMAVDCGSDSGSISGSADAGFCEVERFGFEPGPEFTLEKF QKYADDFKAQYLRRRENGVDMEGRMTILQEHPEPSVENIEGEYWRVVEKATEEIEVLY GADLETGVFGSGFPKKPSQVEFVSNEKYIKSGWNLNNFPRLPGSVLSYESSDISGVLV PWLYVGMCFSSFCWHVEDHHLYSLNYMHWGAPKIWYGVPGKDASKLEEAMRKHLPDLF DEQPDLLHKLVTQLSPSILKYEGVPVYRCVQNAGEFVLTFPRAYHAGFNCGFNCAEAV NVAPVDWLPHGQIAIELYREQGRKTSISHDKLLLGAAREAVKALWELNLLKKYTSDNI RWKDMCGKDGVLAKTLKMRVEMEHRGREVLCSSSLAVKMESNFDATSERECSICFFDL HLSAAGCHCSPDRYACLNHAKQFCSCARGAKIFLFRYDINELNILVEALEGKLSAVYR WARLDLGLALSSYVSRDNMLGAKLSHALEVIPKGVQSQPSVNSVKDLPGEEMSKDKPL ILAQISAQMLLLQRNKLPEAALPSKVSNAKLKKEETILSASNLRMPVCHFSQEHRPST GGETAVESRVKKPSAPADDNIILLSDDEGDEPKKPVSERPKEHFITKQSDVSLRLAPS GEAITCNFNNEPILTIPLTDAAVMNQRDASSPDVQRNSCSSHYSQVKDEHAGNDITLF GYNHQNISCHLDSAIAESGRNVQDSCNSTEMYNINNNLVTVESNLQHLLPLESEKANK DKFEKLGAIASSNLVDNAKANVGGPSCSQNNLDRNFRQKGPRIAKVVRRINCNVEPLE FGVVLSGNFWCNSQAIFPKGFKSRVRYINVLDPTNMAYYVSEILDAGRDGPLFMVSVE HCPSEVFIHVSAARCWEMVREKVNQEITKQHRLGRTNLPPLQPPGSLDGFEMFGFSSP AIVQAVEAIDRNRVCTEYWDSRPYSRPRVQILQHSQLPDNGGNLFRTSGEQSNAGDPR NNCLPGGVDTILRGLFKKANSEELHLLCSILSDKRPPVDVDRVARLLNEEIHRRPG" mRNA join(<36990665..36990690,36990864..36990935, 36991322..36991399,36991536..36992063,36992534..36992607, 36992674..36992758,36993321..36993482,36994153..36994521, 36995166..36996564,36996660..36996763,36997385..36997582, 36997969..>36997982) /locus_tag="TCM_026189" /product="Transcription factor jumonji family protein / zinc finger family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s04370.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s04370.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc448t11; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10364t3" CDS join(<36990667..36990690,36990864..36990935, 36991322..36991399,36991536..36992063,36992534..36992607, 36992674..36992758,36993321..36993482,36994153..36994521, 36995166..36996564,36996660..36996763,36997385..36997582, 36997969..>36997980) /locus_tag="TCM_026189" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Transcription factor jumonji family protein / zinc finger family protein isoform 3" /protein_id="EOY10917.1" /db_xref="Phytozome:POPTR_0013s04370.1" /db_xref="TAIR:AT1G08620.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6H616" /translation="PDCGKLDQNLRLRLNLPKGVIRGCPECNDCQKVTARWRPEEACR PDLEDAPVFYPTEEEFEDTLKYIASIRPRAEQYGICRIVPPSSWKPPCPLKEKNVWEN SRFTTRVQRVDKLQNRDSMRKMSKVNNNMRRKRRRCMRMAVDCGSDSGSISGSADAGF CEVERFGFEPGPEFTLEKFQKYADDFKAQYLRRRENGVDMEGRMTILQEHPEPSVENI EGEYWRVVEKATEEIEVLYGADLETGVFGSGFPKKPSQVEFVLSYESSDISGVLVPWL YVGMCFSSFCWHVEDHHLYSLNYMHWGAPKIWYGVPGKDASKLEEAMRKHLPDLFDEQ PDLLHKLVTQLSPSILKYEGVPVYRCVQNAGEFVLTFPRAYHAGFNCGFNCAEAVNVA PVDWLPHGQIAIELYREQGRKTSISHDKLLLGAAREAVKALWELNLLKKYTSDNIRWK DMCGKDGVLAKTLKMRVEMEHRGREVLCSSSLAVKMESNFDATSERECSICFFDLHLS AAGCHCSPDRYACLNHAKQFCSCARGAKIFLFRYDINELNILVEALEGKLSAVYRWAR LDLGLALSSYVSRDNMLGAKLSHALEVIPKGVQSQPSVNSVKDLPGEEMSKDKPLILA QISAQMLLLQRNKLPEAALPSKVSNAKLKKEETILSASNLRMPVCHFSQEHRPSTGGE TAVESRVKKPSAPADDNIILLSDDEGDEPKKPVSERPKEHFITKQSDVSLRLAPSGEA ITCNFNNEPILTIPLTDAAVMNQRDASSPDVQRNSCSSHYSQVKDEHAGNDITLFGYN HQNISCHLDSAIAESGRNVQDSCNSTEMYNINNNLVTVESNLQHLLPLESEKANKDKF EKLGAIASSNLVDNAKANVGGPSCSQNNLDRNFRQKGPRIAKVVRRINCNVEPLEFGV VLSGNFWCNSQAIFPKGFKSRVRYINVLDPTNMAYYVSEILDAGRDGPLFMVSVEHCP SEVFIHVSAARCWEMVREKVNQEITKQHRLGRTNLPPLQPPGSLDGFEMFGFSSPAIV QAVEA" mobile_element complement(36993802..36993863) /note="source:CACAO_M_S_E90022_F9_scaffold_8 3103 3165" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 37006558..37008149 /note="source:scaffold_6_CACTA_0702 12994 14548" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(37011442..37012390) /note="source:CACAO_M_E44210_F112_scaffold_5 14432 15334" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 37017485..37017540 /note="source:scaffold_1_CACTA_0011 7483 7538" /mobile_element_type="transposon:TIR/CACTA" gene complement(37023266..37025616) /locus_tag="TCM_026191" /note="dbxref CacaoGD:Thecc1EG026191" mRNA complement(join(37023266..37023593,37023900..37023995, 37024196..37025616)) /locus_tag="TCM_026191" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT5G28490.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044482t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400040481" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc990t1; inference alignment:Newbler:10:TSA:cgbaL_g00993t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10341t2" mRNA complement(join(37023349..37023593,37023900..37023991, 37024196..37024995,37025326..37025554)) /locus_tag="TCM_026191" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT5G28490.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044482t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400040481" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10341t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10341t2" mRNA complement(join(37023352..37023593,37024196..37024995, 37025326..37025615)) /locus_tag="TCM_026191" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:TAIR:AT5G28490.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044482t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400040481" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00993t00004; inference alignment:Newbler:10:TSA:cgbaP2_g13662t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10341t2" CDS complement(join(37023580..37023593,37024196..37024835)) /locus_tag="TCM_026191" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG044482t1" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY10920.1" /db_xref="Phytozome:PGSC0003DMP400040481" /db_xref="TAIR:AT5G28490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D8QTB1" /translation="MDLISPQNNPNNYPCPIVGSNTIATLVTNNNNNIISSSTVTPTS GTTTTTPPASTTPSRYENQKRRDWNTFCQYLRNHRPPLSLSMCSGAHVLEFLRYLDQF GKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEEHGGRPEGNPFGA RAVRIYLREVRDFQAKARGVSYEKKRKRPKQKVASSAQPPAPPSATLADATAAKSTI" CDS complement(join(37023909..37023991,37024196..37024835)) /locus_tag="TCM_026191" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG044482t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY10918.1" /db_xref="Phytozome:PGSC0003DMP400040481" /db_xref="TAIR:AT5G28490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D8QTB1" /translation="MDLISPQNNPNNYPCPIVGSNTIATLVTNNNNNIISSSTVTPTS GTTTTTPPASTTPSRYENQKRRDWNTFCQYLRNHRPPLSLSMCSGAHVLEFLRYLDQF GKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEEHGGRPEGNPFGA RAVRIYLREVRDFQAKARGVSYEKKRKRPKQKVASSAQPPAPPSATLADATAAMCFDK WVPFKMLFRGQLGMVVTGMSSS" mRNA complement(join(37023962..37023995,37024192..37025233)) /locus_tag="TCM_026191" /product="Uncharacterized protein isoform 4" /inference="alignment:exonerate- protein:2:TAIR:AT5G28490.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044482t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400040481" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc992t1; inference alignment:Newbler:10:TSA:cgbaP2_g13662t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10341t2" CDS complement(join(37023982..37023995,37024196..37024835)) /locus_tag="TCM_026191" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG044482t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY10919.1" /db_xref="Phytozome:PGSC0003DMP400040481" /db_xref="TAIR:AT5G28490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D8QTB1" /translation="MDLISPQNNPNNYPCPIVGSNTIATLVTNNNNNIISSSTVTPTS GTTTTTPPASTTPSRYENQKRRDWNTFCQYLRNHRPPLSLSMCSGAHVLEFLRYLDQF GKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEEHGGRPEGNPFGA RAVRIYLREVRDFQAKARGVSYEKKRKRPKQKVASSAQPPAPPSATLADATAATSVL" CDS complement(join(37023992..37023995,37024192..37024835)) /locus_tag="TCM_026191" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG044482t1" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY10921.1" /db_xref="Phytozome:PGSC0003DMP400040481" /db_xref="TAIR:AT5G28490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D8QTB1" /translation="MDLISPQNNPNNYPCPIVGSNTIATLVTNNNNNIISSSTVTPTS GTTTTTPPASTTPSRYENQKRRDWNTFCQYLRNHRPPLSLSMCSGAHVLEFLRYLDQF GKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEEHGGRPEGNPFGA RAVRIYLREVRDFQAKARGVSYEKKRKRPKQKVASSAQPPAPPSATLADATAASD" mobile_element complement(37027457..37027481) /note="source:scaffold_5_CACTA_0580 7241 7312" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(37027482..37027521) /note="source:CACAO_M_E42514_F40_scaffold_5 142 181" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 37027489..37027548 /note="source:CACAO_M_S_E4863_F51_scaffold_1 5682 5739" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(37030404..37037245) /locus_tag="TCM_026193" /note="dbxref CacaoGD:Thecc1EG026193" mRNA complement(join(37030404..37031093,37031184..37031783, 37032076..37032134,37032274..37032406,37032488..37032559, 37032824..37032874,37033178..37033289,37034217..37034664, 37035185..37035331,37035927..37036076)) /locus_tag="TCM_026193" /product="L-allo-threonine aldolase isoform 4" /inference="alignment:exonerate- protein:2:ricco:29680.m001689" /inference="similar to AA sequence:ricco:29680.m001689" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:PASA:2:TSA:puevd3b025334t1a3; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc839t10" mRNA complement(join(37030414..37031093,37031184..37031250, 37031683..37031783,37032076..37032134,37032274..37032406, 37032488..37032559,37032824..37032874,37033178..37033289, 37034217..37034664,37035185..37035331,37035421..37035571, 37037045..37037245)) /locus_tag="TCM_026193" /product="Threonine aldolase 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29680.m001689" /inference="similar to AA sequence:ricco:29680.m001689" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc839t10" mRNA complement(join(37030416..37031093,37031184..37031250, 37031683..37031783,37032076..37032134,37032274..37032406, 37032488..37032559,37032824..37032874,37033178..37033289, 37034217..37034664,37035185..37035331,37035927..37036067)) /locus_tag="TCM_026193" /product="Threonine aldolase 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29680.m001689" /inference="similar to AA sequence:ricco:29680.m001689" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10368t3; alternateUTRof:Thecc1EG026193t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc839t10" mRNA complement(join(37031013..37031250,37031683..37031783, 37032076..37032134,37032274..37032406,37032488..37032559, 37032824..37032874,37033178..37033289,37034217..37034664, 37035185..37035331,37035927..37036080)) /locus_tag="TCM_026193" /product="Threonine aldolase 1 isoform 5" /inference="alignment:exonerate- protein:2:ricco:29680.m001689" /inference="similar to AA sequence:ricco:29680.m001689" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc839t5; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc839t10" CDS complement(join(37031055..37031093,37031184..37031250, 37031683..37031783,37032076..37032134,37032274..37032406, 37032488..37032559,37032824..37032874,37033178..37033289, 37034217..37034659)) /locus_tag="TCM_026193" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29680.m001689" /codon_start=1 /product="Threonine aldolase 1 isoform 1" /protein_id="EOY10922.1" /db_xref="TAIR:AT1G08630.4" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FRS2" /translation="MVTRMVDLRSDTVTKPTEAMRAAMVTAEVDDDVLGADPTAFQLE SEVAKIMGKEAGLFVPSGTMGNLISVLVHCDIRGSEVILGDNSHIHIYENGGISTIGG VHPRPVKNNEDGTMDINLIEAAIRDPRGELVYPTTRLICLENSHANSGGRCLSVAYTD RVGELATKHGLKLHIDGARIFNASVALGVPVHRLVQAADSISVCLSKGLGAPVGSVIV GSKSFITKARRLRKTLGGGMRQVGFICAAAFVALQENVGKLEGDHKKAKVLAEGLNQI KGLRVDVAAVQTNIIYFDIVEGSKLTAEKLYKNLEEHGVLVMPEGPARMRIVLHHQIS SSDVQYTLSCFQQALTGVQEENGN" CDS complement(join(37031055..37031093,37031184..37031250, 37031683..37031783,37032076..37032134,37032274..37032406, 37032488..37032559,37032824..37032874,37033178..37033289, 37034217..37034659)) /locus_tag="TCM_026193" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29680.m001689" /codon_start=1 /product="Threonine aldolase 1 isoform 1" /protein_id="EOY10923.1" /db_xref="TAIR:AT1G08630.4" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FRS2" /translation="MVTRMVDLRSDTVTKPTEAMRAAMVTAEVDDDVLGADPTAFQLE SEVAKIMGKEAGLFVPSGTMGNLISVLVHCDIRGSEVILGDNSHIHIYENGGISTIGG VHPRPVKNNEDGTMDINLIEAAIRDPRGELVYPTTRLICLENSHANSGGRCLSVAYTD RVGELATKHGLKLHIDGARIFNASVALGVPVHRLVQAADSISVCLSKGLGAPVGSVIV GSKSFITKARRLRKTLGGGMRQVGFICAAAFVALQENVGKLEGDHKKAKVLAEGLNQI KGLRVDVAAVQTNIIYFDIVEGSKLTAEKLYKNLEEHGVLVMPEGPARMRIVLHHQIS SSDVQYTLSCFQQALTGVQEENGN" mRNA complement(join(<37031067..37031093,37031184..37031250, 37031683..37031783,37032076..37032134,37032274..37032406, 37032488..37032559,37032824..37032874,37033178..37033289, 37034217..37034664,37035185..37035331,37035421..37035580)) /locus_tag="TCM_026193" /product="Threonine aldolase 1 isoform 3" /inference="alignment:exonerate- protein:2:ricco:29680.m001689" /inference="similar to AA sequence:ricco:29680.m001689" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc839t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc839t10" CDS complement(join(<37031067..37031093,37031184..37031250, 37031683..37031783,37032076..37032134,37032274..37032406, 37032488..37032559,37032824..37032874,37033178..37033289, 37034217..37034659)) /locus_tag="TCM_026193" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29680.m001689" /codon_start=1 /product="Threonine aldolase 1 isoform 3" /protein_id="EOY10924.1" /db_xref="TAIR:AT1G08630.4" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FRS2" /translation="MVTRMVDLRSDTVTKPTEAMRAAMVTAEVDDDVLGADPTAFQLE SEVAKIMGKEAGLFVPSGTMGNLISVLVHCDIRGSEVILGDNSHIHIYENGGISTIGG VHPRPVKNNEDGTMDINLIEAAIRDPRGELVYPTTRLICLENSHANSGGRCLSVAYTD RVGELATKHGLKLHIDGARIFNASVALGVPVHRLVQAADSISVCLSKGLGAPVGSVIV GSKSFITKARRLRKTLGGGMRQVGFICAAAFVALQENVGKLEGDHKKAKVLAEGLNQI KGLRVDVAAVQTNIIYFDIVEGSKLTAEKLYKNLEEHGVLVMPEGPARMRIVLHHQIS SSDVQYTLSCFQQALTGVQEE" mRNA complement(join(37031071..37031093,37031184..37031250, 37031683..37032134,37032274..37032406,37032488..37032559, 37032824..37032874,37033178..37033289,37034217..37034664, 37035185..37035331,37035927..37036080)) /locus_tag="TCM_026193" /product="Threonine aldolase 1 isoform 6" /inference="alignment:exonerate- protein:2:ricco:29680.m001689" /inference="similar to AA sequence:ricco:29680.m001689" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc839t7; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc839t10" CDS complement(join(37031148..37031250,37031683..37031783, 37032076..37032134,37032274..37032406,37032488..37032559, 37032824..37032874,37033178..37033289,37034217..37034659)) /locus_tag="TCM_026193" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:29680.m001689" /codon_start=1 /product="Threonine aldolase 1 isoform 5" /protein_id="EOY10926.1" /db_xref="TAIR:AT1G08630.4" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FRS2" /translation="MVTRMVDLRSDTVTKPTEAMRAAMVTAEVDDDVLGADPTAFQLE SEVAKIMGKEAGLFVPSGTMGNLISVLVHCDIRGSEVILGDNSHIHIYENGGISTIGG VHPRPVKNNEDGTMDINLIEAAIRDPRGELVYPTTRLICLENSHANSGGRCLSVAYTD RVGELATKHGLKLHIDGARIFNASVALGVPVHRLVQAADSISVCLSKGLGAPVGSVIV GSKSFITKARRLRKTLGGGMRQVGFICAAAFVALQENVGKLEGDHKKAKVLAEGLNQI KGLRVDVAAVQTNIIYFDIVEGSKLTAEKLYKNLEEHGVLVMPEGPARMRIVLHHQIS SSDVQYTLSCFQVLKHHSRLLPH" mRNA complement(join(37031187..37031783,37032076..37032134, 37032274..37032406,37032488..37032559,37032824..37032874, 37033178..37033289,37034217..37034664,37035185..37035331, 37035421..37035496)) /locus_tag="TCM_026193" /product="L-allo-threonine aldolase isoform 4" /inference="alignment:exonerate- protein:2:ricco:29680.m001689" /inference="similar to AA sequence:ricco:29680.m001689" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc756t5; alternateUTRof:Thecc1EG026193t4; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc839t10" CDS complement(join(37031574..37031783,37032076..37032134, 37032274..37032406,37032488..37032559,37032824..37032874, 37033178..37033289,37034217..37034659)) /locus_tag="TCM_026193" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29680.m001689" /codon_start=1 /product="L-allo-threonine aldolase isoform 4" /protein_id="EOY10925.1" /db_xref="TAIR:AT1G08630.4" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FRS2" /translation="MVTRMVDLRSDTVTKPTEAMRAAMVTAEVDDDVLGADPTAFQLE SEVAKIMGKEAGLFVPSGTMGNLISVLVHCDIRGSEVILGDNSHIHIYENGGISTIGG VHPRPVKNNEDGTMDINLIEAAIRDPRGELVYPTTRLICLENSHANSGGRCLSVAYTD RVGELATKHGLKLHIDGARIFNASVALGVPVHRLVQAADSISVCLSKGLGAPVGSVIV GSKSFITKARRLRKTLGGGMRQVGFICAAAFVALQENVGKLEGDHKKAKVLAEGLNQI KGLRVDVAAVQTNIIYFDIVEGSKLTAEKLYKNLEEHGVLVMPEGPARSVCSLKDLPG FWKTYLYMFLLLLIPEILIKLGCIT" CDS complement(join(37031574..37031783,37032076..37032134, 37032274..37032406,37032488..37032559,37032824..37032874, 37033178..37033289,37034217..37034659)) /locus_tag="TCM_026193" /note="encoded by transcript variant 7; alternatively spliced; dbxref ricco:29680.m001689" /codon_start=1 /product="L-allo-threonine aldolase isoform 4" /protein_id="EOY10928.1" /db_xref="TAIR:AT1G08630.4" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FRS2" /translation="MVTRMVDLRSDTVTKPTEAMRAAMVTAEVDDDVLGADPTAFQLE SEVAKIMGKEAGLFVPSGTMGNLISVLVHCDIRGSEVILGDNSHIHIYENGGISTIGG VHPRPVKNNEDGTMDINLIEAAIRDPRGELVYPTTRLICLENSHANSGGRCLSVAYTD RVGELATKHGLKLHIDGARIFNASVALGVPVHRLVQAADSISVCLSKGLGAPVGSVIV GSKSFITKARRLRKTLGGGMRQVGFICAAAFVALQENVGKLEGDHKKAKVLAEGLNQI KGLRVDVAAVQTNIIYFDIVEGSKLTAEKLYKNLEEHGVLVMPEGPARSVCSLKDLPG FWKTYLYMFLLLLIPEILIKLGCIT" CDS complement(join(37031986..37032134,37032274..37032406, 37032488..37032559,37032824..37032874,37033178..37033289, 37034217..37034659)) /locus_tag="TCM_026193" /note="encoded by transcript variant 6; alternatively spliced; dbxref ricco:29680.m001689" /codon_start=1 /product="Threonine aldolase 1 isoform 6" /protein_id="EOY10927.1" /db_xref="TAIR:AT1G08630.4" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FRS2" /translation="MVTRMVDLRSDTVTKPTEAMRAAMVTAEVDDDVLGADPTAFQLE SEVAKIMGKEAGLFVPSGTMGNLISVLVHCDIRGSEVILGDNSHIHIYENGGISTIGG VHPRPVKNNEDGTMDINLIEAAIRDPRGELVYPTTRLICLENSHANSGGRCLSVAYTD RVGELATKHGLKLHIDGARIFNASVALGVPVHRLVQAADSISVCLSKGLGAPVGSVIV GSKSFITKARRLRKTLGGGMRQVGFICAAAFVALQENVGKLEGDHKKAKVLAEGLNQI KGLRVDVAAVQTNIVSMLVTKLTWMTIYSFAMHSGLEGLWLEL" gene complement(37037392..37043648) /locus_tag="TCM_026195" /note="dbxref CacaoGD:Thecc1EG026195" mRNA complement(join(37037392..37037766,37037880..37038936, 37039918..37040199,37040758..37042473,37043268..37043639)) /locus_tag="TCM_026195" /product="Cell division cycle 5 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g36600.2" /inference="similar to AA sequence:ricco:29680.m001688" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc350t4; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc350t4" mRNA complement(join(37037738..37038052,37038125..37038936, 37039918..37040199,37040758..37042473,37043268..37043643)) /locus_tag="TCM_026195" /product="Cell division cycle 5 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g36600.2" /inference="similar to AA sequence:ricco:29680.m001688" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc342t1; alternateUTRof:Thecc1EG026195t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc350t4; inference alignment:Newbler:10:TSA:cgbaP2_g00941t00001" mRNA complement(join(37037800..37039006,37039918..37040199, 37040758..37042473,37043268..37043648)) /locus_tag="TCM_026195" /product="Cell division cycle 5 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g36600.2" /inference="similar to AA sequence:ricco:29680.m001688" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:PASA:2:TSA:puevd3b025335t1a2; inference alignment:Newbler:10:TSA:cgbaP2_g00941t00001" CDS complement(join(37038208..37038936,37039918..37040199, 37040758..37042473,37043268..37043444)) /locus_tag="TCM_026195" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29680.m001688" /codon_start=1 /product="Cell division cycle 5 isoform 1" /protein_id="EOY10929.1" /db_xref="TAIR:AT1G09770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P92948" /translation="MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQ CKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKL LDAACARDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLAN TRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGIDYNSEIPFEKR PPPGFYDVADEDRLVEQPKFPTTIEELEGKRRVDIESQLRKQDIAKNKIAQRQDAPSA ILQANKLNDPETVRKRSKLMLPAPQISDHELEEIAKMGYASDLLAGNDELAEGSGATR ALLANYSQTPRQGMTPLRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHP SDFSGVTPKKRENQTPNPMSTPSMTPGGAGLTPRIGMTPSRDGYSFGVTPKGTPIRDE LHINEDMDLNDSAKLEQRRQPDLRRNLRSGLGSLPQPKNEYQIVIQPLPEENEEPEEK IEEDMSDRIARERAEEEARLQALLKKRSKVLQRELPRPPSASLELIRDSLLRTDGDKS SFVPPTSIEQADEMIRKELLSLLEHDNAKYPLDEKANKGKKKGTKRPANGSIPSIEDF EEDEMKEADSLIKEEAEFLRVAMGHENESLDDFVEAHNTCLNDLMYFPTRNAYGLSSV AGNMEKLAALQTEFDNVKKKLDNDKSKAESMEKKFNVLTQGYERRAATLWRQIESTFK QMDTAGTELECFQALQKQEQFAASHRINGLWEEVQKQKELEQTLQRRYGNLIAELERI QILMNIYRVQAQKQEEAAGKDHALELSEAAVAANPAVVPSTVLSEPVPSSEHVDSSLD EQSSLKADMNVDSRKEHAIMDVETDGIMSGNVPLVVEDKEDNISKTLDGMTGNIVTSS EVAAESINPDAVSTKQDSIQETLEGEGVADHTKVDNSSVLGGDTAEKQTGMEE" CDS complement(join(37038208..37038936,37039918..37040199, 37040758..37042473,37043268..37043444)) /locus_tag="TCM_026195" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29680.m001688" /codon_start=1 /product="Cell division cycle 5 isoform 1" /protein_id="EOY10930.1" /db_xref="TAIR:AT1G09770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P92948" /translation="MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQ CKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKL LDAACARDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLAN TRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGIDYNSEIPFEKR PPPGFYDVADEDRLVEQPKFPTTIEELEGKRRVDIESQLRKQDIAKNKIAQRQDAPSA ILQANKLNDPETVRKRSKLMLPAPQISDHELEEIAKMGYASDLLAGNDELAEGSGATR ALLANYSQTPRQGMTPLRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHP SDFSGVTPKKRENQTPNPMSTPSMTPGGAGLTPRIGMTPSRDGYSFGVTPKGTPIRDE LHINEDMDLNDSAKLEQRRQPDLRRNLRSGLGSLPQPKNEYQIVIQPLPEENEEPEEK IEEDMSDRIARERAEEEARLQALLKKRSKVLQRELPRPPSASLELIRDSLLRTDGDKS SFVPPTSIEQADEMIRKELLSLLEHDNAKYPLDEKANKGKKKGTKRPANGSIPSIEDF EEDEMKEADSLIKEEAEFLRVAMGHENESLDDFVEAHNTCLNDLMYFPTRNAYGLSSV AGNMEKLAALQTEFDNVKKKLDNDKSKAESMEKKFNVLTQGYERRAATLWRQIESTFK QMDTAGTELECFQALQKQEQFAASHRINGLWEEVQKQKELEQTLQRRYGNLIAELERI QILMNIYRVQAQKQEEAAGKDHALELSEAAVAANPAVVPSTVLSEPVPSSEHVDSSLD EQSSLKADMNVDSRKEHAIMDVETDGIMSGNVPLVVEDKEDNISKTLDGMTGNIVTSS EVAAESINPDAVSTKQDSIQETLEGEGVADHTKVDNSSVLGGDTAEKQTGMEE" CDS complement(join(37038953..37039006,37039918..37040199, 37040758..37042473,37043268..37043444)) /locus_tag="TCM_026195" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29680.m001688" /codon_start=1 /product="Cell division cycle 5 isoform 3" /protein_id="EOY10931.1" /db_xref="TAIR:AT1G09770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P92948" /translation="MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQ CKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKL LDAACARDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLAN TRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGIDYNSEIPFEKR PPPGFYDVADEDRLVEQPKFPTTIEELEGKRRVDIESQLRKQDIAKNKIAQRQDAPSA ILQANKLNDPETVRKRSKLMLPAPQISDHELEEIAKMGYASDLLAGNDELAEGSGATR ALLANYSQTPRQGMTPLRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHP SDFSGVTPKKRENQTPNPMSTPSMTPGGAGLTPRIGMTPSRDGYSFGVTPKGTPIRDE LHINEDMDLNDSAKLEQRRQPDLRRNLRSGLGSLPQPKNEYQIVIQPLPEENEEPEEK IEEDMSDRIARERAEEEARLQALLKKRSKVLQRELPRPPSASLELIRDSLLRTDGDKS SFVPPTSIEQADEMIRKELLSLLEHDNAKYPLDEKANKGKKKGTKRPANGSIPSIEDF EEDEMKEADSLIKEEAEFLRVAMGHENESLDDFVEAHNTCLNDLMYFPTRNAYGLSSV AGNMEKLAALQTEFDNVKKKLDNDKSKAESMEKKFNVLTQGYEVSLWNLFEISIRFVL NN" mobile_element 37043884..37044313 /note="source:CACAO_Mariner_E176_scaffold_6 3919 4322" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 37044824..37044962 /note="source:scaffold_3_CACTA_0396 879 981" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(37045533..37045598) /note="source:CACAO_Again_on_E64_scaffold_2 692 756" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(37045565..37045616) /note="source:scaffold_5_CACTA_0580 7220 7271" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(37045617..37045632) /note="source:CACAO_M_E51798_F369_scaffold_7 1318 1374" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(37046109..37052698) /locus_tag="TCM_026196" /note="dbxref CacaoGD:Thecc1EG026196" mRNA complement(join(37046109..37046546,37046910..37046981, 37047187..37047282,37047415..37047540,37047786..37047843, 37048226..37048281,37049013..37049090,37049237..37049341, 37049439..37049541,37050156..37050444,37052601..37052698)) /locus_tag="TCM_026196" /product="Chloroplast J-like domain 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01023530001" /inference="similar to AA sequence:Phytozome:POPTR_0013s04330.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g09484t00001" CDS complement(join(37046484..37046546,37046910..37046981, 37047187..37047282,37047415..37047540,37047786..37047843, 37048226..37048281,37049013..37049090,37049237..37049341, 37049439..37049541,37050156..37050262)) /locus_tag="TCM_026196" /codon_start=1 /product="Chloroplast J-like domain 1" /protein_id="EOY10932.1" /db_xref="Phytozome:POPTR_0013s04330.1" /db_xref="TAIR:AT1G08640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7KIU0" /translation="MALSMSNVFHCPKPKVSPKNSIPNSSISKSSCSFLRFPGRFAFP KTKIVICAASSAAGSSSPDSDLNPYEVLGVSPIEGFEKVKQVYTRKRKEADKRGDEAT AALLEKAYDKLMMAQLMNRKKGVTYGSFKVSKDVKYADKQPIVPWGPRFSKSSVQDRR INLAISAVFTAWIVIKRNAEYKPLQFLAFAFVYRLFEKLKAFEPPVSPTFTEEGEDDG RGLRMGKRLLRSLALVFGCVALSSLAYTGLLNLIEYVGSYIPAVLYNNQELIITTASA VALYIMGSYYR" mobile_element 37050465..37051398 /note="source:scaffold_4_CACTA_0511 2486 3364" /mobile_element_type="transposon:TIR/CACTA" mobile_element 37050608..37051402 /note="source:CACAO_on_E683_scaffold_9 1458 2305" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(37051577..37052159) /note="source:scaffold_4_CACTA_0510 2109 2671" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(37052048..37052191) /note="source:CACAO_Mariner_E38_scaffold_2 2227 2367" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene complement(37054745..37055963) /locus_tag="TCM_026197" /note="dbxref CacaoGD:Thecc1EG026197" mRNA complement(join(37054745..37055301,37055535..37055664, 37055761..37055963)) /locus_tag="TCM_026197" /product="Myb domain protein 15, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01027810001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020889t1" /inference="similar to AA sequence:Phytozome:POPTR_0008s16660.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10359t2" CDS complement(join(37054866..37055301,37055535..37055664, 37055761..37055893)) /locus_tag="TCM_026197" /note="paralog of Thecc1EG020889t1" /codon_start=1 /product="Myb domain protein 15, putative" /protein_id="EOY10933.1" /db_xref="Phytozome:POPTR_0008s16660.1" /db_xref="TAIR:AT3G23250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HKG6" /translation="MARAPCCEKMGMKKGPWTPEEDRILISYIQRHGHGNWRALPKQA GLPRCGKSCRLRWINYLRPDIKRGNFTSEEQETIFKLHQVLGNRWSAIAARLPGRTDN EIKNYWHGHLKKKLKQAAAGSMDCKAIMEARIALHHQRDQSPGLMKPSISSQHSPEPT CSTSTPKPDTEELALTGEQHGAVQESAGVQFPFSHVSMVETMKNNGPNVDGNRDFWYK LFMENSNEAHGNLG" mobile_element complement(37055220..37055303) /note="source:scaffold_3_CACTA_0395 939 1022" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(37058389..37058561) /note="source:scaffold_5_CACTA_0607 6497 6670" /mobile_element_type="transposon:TIR/CACTA" mobile_element 37058787..37059490 /note="source:scaffold_5_CACTA_0615 1618 2269" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(37063138..37063235) /note="source:scaffold_10_CACTA_0137 3148 3247" /mobile_element_type="transposon:TIR/CACTA" gene 37064946..37066561 /locus_tag="TCM_026198" /note="dbxref CacaoGD:Thecc1EG026198" mRNA join(37064946..37065818,37066085..37066561) /locus_tag="TCM_026198" /product="Phosphoenolpyruvate carboxylase kinase 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s03480.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020884t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s03480.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14894t1" CDS join(37065041..37065818,37066085..37066131) /locus_tag="TCM_026198" /note="paralog of Thecc1EG020884t1" /codon_start=1 /product="Phosphoenolpyruvate carboxylase kinase 1" /protein_id="EOY10934.1" /db_xref="Phytozome:POPTR_0019s03480.1" /db_xref="TAIR:AT1G08650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SPK4" /translation="MSETLKNKYQVCEEIGRGRFGTISRVFCPITQASFACKSIDKRL LTDPTDRECLENEPKIMTLLSPHSNIVQIHDMFESEDTLQLILELCQPYTLYDQILQP GLSESKAASYVQQITSGLAHCHRFGIVHRDIKPDNIFFDFRGKLKIGDFGSATWLGEL GTVDGLVGTPYYVAPEVVMGRAYNEKADVWSAGVVLYVMLAGVPPFYGETAEEIFEAV LRGNLRFPTRIFRSVSAEAKDLLRKMICRDVSKRLSAEQVLRHPWILNGGETTSMD" mobile_element complement(37068910..37069173) /note="source:CACAO_on_E69_scaffold_9 25 268" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(37070105..37071131) /note="source:INTACT135F_F90_scaffold_2-int 12858 13925" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(37071705..37072302) /note="source:CACAO_on_E373_scaffold_1 145 728" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 37078513..37078577 /note="source:INTACT383F_F354_scaffold_3-int 4379 4443" /mobile_element_type="retrotransposon:LTR/Unclassified" gene complement(37079437..37085538) /locus_tag="TCM_026199" /note="dbxref CacaoGD:Thecc1EG026199" mRNA complement(join(37079437..37080385,37081774..37082043, 37082403..37082962,37085053..37085538)) /locus_tag="TCM_026199" /product="Type one serine/threonine protein phosphatase 4 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g43800.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020880t1" /inference="similar to AA sequence:ricco:29680.m001683" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:PASA:2:TSA:puevd3b025339t1a2; inference alignment:Newbler:10:TSA:cgbaB_g08623t00001" mRNA complement(join(37079437..37080385,37081774..37082043, 37082403..37082962,37085050..37085538)) /locus_tag="TCM_026199" /product="Type one serine/threonine protein phosphatase 4 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g43800.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020880t1" /inference="similar to AA sequence:ricco:29680.m001683" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08623t00001" CDS complement(join(37080362..37080385,37081774..37082043, 37082403..37082962,37085053..37085224)) /locus_tag="TCM_026199" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29680.m001683; paralog of Thecc1EG020880t1" /codon_start=1 /product="Type one serine/threonine protein phosphatase 4 isoform 2" /protein_id="EOY10936.1" /db_xref="TAIR:AT2G39840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P48462" /translation="MEQGILDDIINRLLEVRGRPGKQVQLSESEIRQLCVVSKDIFLQ QPNLLELEAPIKICDIHGQYSDLLRLFEYGGLPPNANYLFLGDYVDRGKQSLEAICLL LAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKTFTECFNCLPVAALI DEKILCMHGGLSPDLNNLDQIRSLQRPTDVPDTGLLCDLLWSDPSKDVQGWGVNDRGV SFTFGSDKVSEFLQKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGA MMSVDETLMCSFQILKPVDKKSKFNFGSTTTAKPGNPSTGVFGSTTTAKPGNSPAGIK SFFGTKV" CDS complement(join(37080362..37080385,37081774..37082043, 37082403..37082962,37085050..37085224)) /locus_tag="TCM_026199" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29680.m001683; paralog of Thecc1EG020880t1" /codon_start=1 /product="Type one serine/threonine protein phosphatase 4 isoform 1" /protein_id="EOY10935.1" /db_xref="TAIR:AT2G39840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P48462" /translation="MEQGILDDIINRLLEVRGRPGKQVQLSESEIRQLCVVSKDIFLQ QPNLLELEAPIKICGDIHGQYSDLLRLFEYGGLPPNANYLFLGDYVDRGKQSLEAICL LLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKTFTECFNCLPVAAL IDEKILCMHGGLSPDLNNLDQIRSLQRPTDVPDTGLLCDLLWSDPSKDVQGWGVNDRG VSFTFGSDKVSEFLQKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAG AMMSVDETLMCSFQILKPVDKKSKFNFGSTTTAKPGNPSTGVFGSTTTAKPGNSPAGI KSFFGTKV" gene 37092023..37096314 /locus_tag="TCM_026201" /note="dbxref CacaoGD:Thecc1EG026201" mRNA join(37092023..37092319,37092485..37092982, 37093601..37093693,37093960..37094007,37094192..37094619, 37094909..37096314) /locus_tag="TCM_026201" /product="Ankyrin repeat family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma18g09450.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026206t1" /inference="similar to AA sequence:Phytozome:Glyma18g09450.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.40 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1940t3" CDS join(37092184..37092319,37092485..37092982, 37093601..37093693,37093960..37094007,37094192..37094619, 37094909..37095547) /locus_tag="TCM_026201" /note="paralog of Thecc1EG026206t1" /codon_start=1 /product="Ankyrin repeat family protein, putative" /protein_id="EOY10937.1" /db_xref="Phytozome:Glyma18g09450.1" /db_xref="TAIR:AT3G18670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ICR0" /translation="MATNNQSTDQDTFVPLDVDPLYQAAGRDVSDESAERPFALTAAI ISEEERIRFKYYHQLYLAALKGNWEAAKGYFQDNDPNVFTAEISSTRMNALLVASCNG HTKLVEMLVKRMPKEALEKRGPGGYTALHHAAIGGHLKMAKGLIRKNPRLTQITDNSG NTPLLCAVLLFSRHKLVRYLASATTIEKPERPFSGCKAGDLMVNLTHMGFHVPVHDED DPLETSDQDLVVEKQSQTNEAKTQVYQGVKEVLWRRSKYLVPCIYKVGEKKLGHERAC KLVHLCLKALLNYNERERAKYFNEQEILRYAACCGVVEIVTASLHYFPDLIFSKHGRM ILKNAIQWRQEKIFNLACKSTALDKMLATQCYKPSISHLAAELPTNRQLSVDSCAALQ MQREVQWYKAIESIQHPRMKQLTSAKGKTAFDCFSENRKQMRENAEKWMKDTSDSCML VSTLIATVAFAVAFTVPGGNNEQGIPIFLNKTSFRVFVYSDALALFSSVTSILMFLSI LTSSYKEEDFHRALPKRMIIGLASLFFAIATMMVAFGAALAIVLSERLKWVWGPIIFS ASFPATLFIMLQLPLFIEMVQSTYGSIFQREKIWKLSGHRDAADPLY" mobile_element 37097771..37098362 /note="source:CACAO_M_E52929_F3_scaffold_8 1 591" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 37098366..37099732 /note="source:CACAO_M_S_E64889_F3_scaffold_5 345 1696" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 37100233..37100543 /note="source:MITE_Unknow_2_10 134 444" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(37100769..37100950) /note="source:scaffold_6_CACTA_0699 1405 1586" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(37100938..37101575) /note="source:scaffold_6_CACTA_0699 12920 13555" /mobile_element_type="transposon:TIR/CACTA" mobile_element 37102428..37102686 /note="source:MITE_Unknow_2_20 462 707" /mobile_element_type="transposon:TIR/MITE" gene 37102456..37106769 /locus_tag="TCM_026203" /note="dbxref CacaoGD:Thecc1EG026203" mRNA join(37102456..37102490,37103906..37104048, 37106191..37106769) /locus_tag="TCM_026203" /product="Uncharacterized protein" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.17 coverage" CDS join(37102477..37102490,37103906..37104048, 37106191..37106321) /locus_tag="TCM_026203" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10938.1" /translation="MCVCVFTPDDVYWLSFVVVTELCDAAEFLWLSKEVFVGGDYYAI VLNSKWHGAVEASIWPMEPPQRRTTAAVEEDGCKLAEREEKTGKREGKTHS" mobile_element complement(37105243..37105747) /note="source:CACAO_on_E732_scaffold_9 3450 3931" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(37107875..37107918) /note="source:CACAO_M_S_E52027_F3_scaffold_5 3905 3948" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 37107876..37107928 /note="source:CACAO_M_S_E52027_F3_scaffold_5 3906 3958" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 37113201..37116715 /locus_tag="TCM_026204" /note="dbxref CacaoGD:Thecc1EG026204" mRNA join(37113201..37113516,37113668..37114165, 37114565..37114717,37114835..37114921,37115314..37115741, 37116036..37116715) /locus_tag="TCM_026204" /product="Ankyrin repeat family protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026206t1" /inference="similar to AA sequence:Phytozome:Glyma18g09450.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete" CDS join(37113375..37113516,37113668..37114165, 37114565..37114717,37114835..37114921,37115314..37115741, 37116036..37116245) /locus_tag="TCM_026204" /note="paralog of Thecc1EG026206t1" /codon_start=1 /product="Ankyrin repeat family protein" /protein_id="EOY10939.1" /db_xref="Phytozome:Glyma18g09450.1" /db_xref="TAIR:AT3G18670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ICR0" /translation="MATNNQRTAQEIVINPAPLDVDPLVPAAMGDVSDESAGEPFAPA VTPSEEERTRFNYYRPLHLAALKGNWEAAKGYFPDGDSEAFTEDVSCKGMNALLVASC NGQTKFVEMLVQRMPEKALEKRGPGGYTALHHAAIGGHLKMAKALIRKNPILTQITDN DGKTPLLCAVLLFSRHKLVRYLASKTTNEKPERPFSGCKGGDLMVNLTHMGFHDISLD LIQREPSLVLAESSEGETILQVLAYEPAHFHSGTKLNFWEKWIYQYLCDEDDPLETSD QDLGVEKQSQANEAKTQVPCINKIIDKKLDHERACKLVHLCLEALLDYNERKRNEYFD KQKILHFAARCGVVEIVTASLHYFPDLIFSQHGSLILKNAIQCRQEKIFNLACKKTSL DKMFATMCYEPSISHLAANLPIKRRLSDDSYAASQMQREMQWYKAIERIEHPRMRQLR SEEGKTGFECFSENRNNARECREMDEGYLRFQYACFYSHCHRGVCCSFYSSWRKQ" mobile_element 37117301..37117776 /note="source:CACAO_Mariner_E36_scaffold_2 1749 2227" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(37117972..37118265) /note="source:MITE_Unknow_2_24 1 278" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(37117996..37118299) /note="source:CACAO_Mariner_E69_scaffold_2 2420 2709" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(37120714..37121913) /note="source:scaffold_8_CACTA_0863 3940 5273" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(37124360..37124692) /note="source:scaffold_8_CACTA_0863 38 381" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(37125263..37129133) /note="source:INTACT803_F10_scaffold_6-int 2 3937" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(37132306..37132365) /note="source:CACAO_Mutator_E1149_scaffold_5 4714 4767" /mobile_element_type="transposon:TIR/Mutator" gene 37135786..37141510 /locus_tag="TCM_026206" /note="dbxref CacaoGD:Thecc1EG026206" mRNA join(37135786..37136416,37136568..37137065, 37137423..37137575,37137688..37137780,37139436..37139483, 37139728..37140155,37140705..37141510) /locus_tag="TCM_026206" /product="Ankyrin repeat family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma18g09450.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026201t1" /inference="similar to AA sequence:frave:gene12494" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10386t1" CDS join(37136359..37136416,37136568..37137065, 37137423..37137575,37137688..37137780,37139436..37139483, 37139728..37140155,37140705..37141301) /locus_tag="TCM_026206" /note="dbxref frave:gene12494; paralog of Thecc1EG026201t1" /codon_start=1 /product="Ankyrin repeat family protein, putative" /protein_id="EOY10940.1" /db_xref="TAIR:AT3G18670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9ICR0" /translation="MRDVSDESAGEPFAPAVTPSEEERTRYNYYRPLYLAALEGNWEA ADGYFRDNVPDAFFAQISCTGMNALLVASCNGHTKFVEMLVERMPEKALEMPGPGGYT ALHHAAIGGNLKMAIALIRRNPQLTQITDNGGKTPLLLAVSIFPEHKLVAYLTRSTTI EKPEIPFSGCMAGDLMVNLTHMGFHDISLYLIRREPNLALATSSEGETILQVLAYEPA HFHDETKLNFWERWIYQYFAVPDEDDPFETSDQDLVVEKQSETNEAKTQVYLCVKQVL WRTIKKLVPCINKVQEKKLSHQRACKLVHLCLHALVDYDELKRNDYFDNQKILHHAAC CGVVEIVTASFRYFPDLIFSKHGSQILKNAIQYRQENIFNLACKSTALDKMLATVCFE PSISHLVAELPKNRELADHSCASTEMQRELQWFKMIDSIQHPRLKQLKKEGKTAFQCF LENHKQMRENAEEWMKDTSNSSMLVSTLIATVVFAAAFTVPGGNNEQGIPNFLNDTSF TVFVYSDALALFSSVTAILMFLSILTSSYKEKDFLRALPKRMLIGLASLFFAIATMMV AFGAGLAIVLRERFKWVWGPIMFLASFPATLFIKLQLPLFIEMVQSTYGSIFRRGKIW " mobile_element 37141772..37144788 /note="source:INTACT803_F10_scaffold_6-int 1 3095" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 37144788..37144906 /note="source:CACAO_M_E44184_F10_scaffold_5 88 208" /mobile_element_type="retrotransposon:LTR/Copia" gene 37145676..37150337 /locus_tag="TCM_026209" /note="dbxref CacaoGD:Thecc1EG026209" mRNA join(37145676..37145786,37149392..37149908, 37149999..37150337) /locus_tag="TCM_026209" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.51 coverage" CDS join(37149769..37149908,37149999..37150068) /locus_tag="TCM_026209" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10941.1" /translation="MGGCDGGDGTNSVPGGGGDGGGGGVDGVGGGGGGGEGQILRIGG ILKKSLEPITLEDELETASLLAWIV" mobile_element complement(37150376..37151239) /note="source:CACAO_on_E69_scaffold_9 2 1021" /mobile_element_type="transposon:TIR/hAT" gene 37151566..37153153 /locus_tag="TCM_026210" /note="dbxref CacaoGD:Thecc1EG026210" mRNA join(37151566..37151921,37153012..37153153) /locus_tag="TCM_026210" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc4070t1" CDS 37151607..37151798 /locus_tag="TCM_026210" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10942.1" /translation="MAAKSCLLMILVLPLGLQLSHCQPMVSQAGEAASQAGETASRLK KFSPQKSKRIGSPCWRTSS" mobile_element complement(37151892..37152808) /note="source:CACAO_Again_on_E73_scaffold_3 2 946" /mobile_element_type="transposon:TIR/hAT" gene complement(37153466..37154081) /locus_tag="TCM_026211" /note="dbxref CacaoGD:Thecc1EG026211" mRNA complement(37153466..37154081) /locus_tag="TCM_026211" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.47 coverage" CDS complement(37153627..37153893) /locus_tag="TCM_026211" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10943.1" /translation="MQLAPMIFRPIISSISFRKGSYDLNQARHLLIKVLLFTSRLLLA RRLYCHRHRHLHHQDHCAITTVAATYVNLALLMLLIRKTCLFAR" gene 37154733..37159188 /locus_tag="TCM_026212" /note="dbxref CacaoGD:Thecc1EG026212" mRNA join(37154733..37155101,37156239..37156382, 37156601..37156668,37156784..37156834,37156945..37157004, 37157081..37157521,37158828..37159188) /locus_tag="TCM_026212" /product="RNA-binding ASCH domain protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s03460.1" /inference="similar to AA sequence:ricco:29680.m001682" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1097t6" mRNA join(37154743..37155101,37156239..37156382, 37156601..37156668,37156784..37156834,37156945..37157004, 37157081..37157521,37157801..37157946,37158841..37158869) /locus_tag="TCM_026212" /product="RNA-binding ASCH domain protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s03460.1" /inference="similar to AA sequence:Phytozome:POPTR_0019s03460.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1152t1; alternateUTRof:Thecc1EG026212t2; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1097t6" mRNA join(37154743..37155101,37156239..37156382, 37156601..37156668,37156784..37156834,37156945..37157004, 37157081..37157521,37157801..37157946,37158828..37158856) /locus_tag="TCM_026212" /product="RNA-binding ASCH domain protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s03460.1" /inference="similar to AA sequence:Phytozome:POPTR_0019s03460.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1152t5; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1097t6" mRNA join(37154821..37155101,37156239..37156382, 37156598..37156668,37156784..37156834,37156945..37157004, 37157081..37157521,37157801..37158192) /locus_tag="TCM_026212" /product="RNA-binding ASCH domain protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s03460.1" /inference="similar to AA sequence:Phytozome:POPTR_0019s03460.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10470t2; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1097t6" CDS join(37154969..37155101,37156239..37156382, 37156601..37156668,37156784..37156834,37156945..37157004, 37157081..37157521,37158828..37159001) /locus_tag="TCM_026212" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29680.m001682" /codon_start=1 /product="RNA-binding ASCH domain protein isoform 1" /protein_id="EOY10944.1" /db_xref="TAIR:AT2G20410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5M9" /translation="MRKGGPRREGNYTNPCLTMHQPWASLLVHGIKRIEGRSWPAPIR GRLWIHAASKVPDEATIKAMEDFYREIYAVNGITDLKFPEHYPVSRLLGCVEVVGCLR CEELAQWEVLPEGVRLEGQTDFCWLCEQPKKLLIPFEMRGFQRVYNLEKKIYEAAVRG LVPVEGPAPVKFPLPNPRDPFSLKPGSISVSCPDSKASAVEQSSSLSAAIAGARAAAT QFSKDSNLHKSTIQRSTPESTSSEVQTILVEDNGMPDSNLNEESVKANSASNPCGYFE EERSCSHNQSPAHLKQHPGAPSKLFPSDAGSMVEAIEAVSGPLKYAMLAKGAKTRPSP SSTINGPVHQYPMPPPPAPPST" CDS join(37154969..37155101,37156239..37156382, 37156598..37156668,37156784..37156834,37156945..37157004, 37157081..37157521,37157801..37157839) /locus_tag="TCM_026212" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="RNA-binding ASCH domain protein isoform 4" /protein_id="EOY10947.1" /db_xref="Phytozome:POPTR_0019s03460.1" /db_xref="TAIR:AT2G20410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5M9" /translation="MRKGGPRREGNYTNPCLTMHQPWASLLVHGIKRIEGRSWPAPIR GRLWIHAASKVPDEATIKAMEDFYREIYAVNGITDLKFPEHYPVSRLLVGCVEVVGCL RCEELAQWEVLPEGVRLEGQTDFCWLCEQPKKLLIPFEMRGFQRVYNLEKKIYEAAVR GLVPVEGPAPVKFPLPNPRDPFSLKPGSISVSCPDSKASAVEQSSSLSAAIAGARAAA TQFSKDSNLHKSTIQRSTPESTSSEVQTILVEDNGMPDSNLNEESVKANSASNPCGYF EEERSCSHNQSPAHLKQHPGAPSKIFAAALRGLKPS" CDS join(37154969..37155101,37156239..37156382, 37156601..37156668,37156784..37156834,37156945..37157004, 37157081..37157521,37157801..37157839) /locus_tag="TCM_026212" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="RNA-binding ASCH domain protein isoform 2" /protein_id="EOY10945.1" /db_xref="Phytozome:POPTR_0019s03460.1" /db_xref="TAIR:AT2G20410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5M9" /translation="MRKGGPRREGNYTNPCLTMHQPWASLLVHGIKRIEGRSWPAPIR GRLWIHAASKVPDEATIKAMEDFYREIYAVNGITDLKFPEHYPVSRLLGCVEVVGCLR CEELAQWEVLPEGVRLEGQTDFCWLCEQPKKLLIPFEMRGFQRVYNLEKKIYEAAVRG LVPVEGPAPVKFPLPNPRDPFSLKPGSISVSCPDSKASAVEQSSSLSAAIAGARAAAT QFSKDSNLHKSTIQRSTPESTSSEVQTILVEDNGMPDSNLNEESVKANSASNPCGYFE EERSCSHNQSPAHLKQHPGAPSKIFAAALRGLKPS" CDS join(37154969..37155101,37156239..37156382, 37156601..37156668,37156784..37156834,37156945..37157004, 37157081..37157521,37157801..37157839) /locus_tag="TCM_026212" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="RNA-binding ASCH domain protein isoform 2" /protein_id="EOY10946.1" /db_xref="Phytozome:POPTR_0019s03460.1" /db_xref="TAIR:AT2G20410.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5M9" /translation="MRKGGPRREGNYTNPCLTMHQPWASLLVHGIKRIEGRSWPAPIR GRLWIHAASKVPDEATIKAMEDFYREIYAVNGITDLKFPEHYPVSRLLGCVEVVGCLR CEELAQWEVLPEGVRLEGQTDFCWLCEQPKKLLIPFEMRGFQRVYNLEKKIYEAAVRG LVPVEGPAPVKFPLPNPRDPFSLKPGSISVSCPDSKASAVEQSSSLSAAIAGARAAAT QFSKDSNLHKSTIQRSTPESTSSEVQTILVEDNGMPDSNLNEESVKANSASNPCGYFE EERSCSHNQSPAHLKQHPGAPSKIFAAALRGLKPS" gene 37159726..37160233 /locus_tag="TCM_026213" /note="dbxref CacaoGD:Thecc1EG026213" mRNA 37159726..37160233 /locus_tag="TCM_026213" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.34 coverage" CDS 37159752..37160039 /locus_tag="TCM_026213" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10948.1" /translation="MKNQKVFIDISRLFVFILFNGLLLLHFGFTSKVVARKVPSGSSP HFVASYGLSFKLQVVPNREIQVSPPPPPTPGTIITMLAPAPSPLSGAASSP" gene 37160333..37163659 /locus_tag="TCM_026214" /note="dbxref CacaoGD:Thecc1EG026214" mRNA join(37160333..37160411,37160564..37160649, 37161873..37161996,37162561..37163659) /locus_tag="TCM_026214" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.69 coverage" CDS join(37160365..37160411,37160564..37160649, 37161873..37161996,37162561..37162867) /locus_tag="TCM_026214" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10949.1" /translation="MDNVNGKTIMATCYLIFRGEGSLKHAILAKDAKTPPPPPSPMIN VRIPPPPPPPPSGNVIIHQSAPPPILSPPPPPLPSLPPPTPLQGPASVKPGASSEMDV NSCLLAFLLIHALLFSSQSDLTVEAAESVSGSFSDPFPSHDFYKLKVVSRRIQRPPPP SPMIHAPYHFKSPPPRPPPPSLWQPPL" mobile_element 37163082..37163597 /note="source:INTACT122_F148_scaffold_5-int 4535 5041" /mobile_element_type="retrotransposon:LTR/Copia" gene 37163736..37165124 /locus_tag="TCM_026215" /note="dbxref CacaoGD:Thecc1EG026215" mRNA join(37163736..37163794,37164098..37165124) /locus_tag="TCM_026215" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.71 coverage" gene complement(37163992..37169661) /locus_tag="TCM_026216" /note="dbxref CacaoGD:Thecc1EG026216" mRNA complement(join(37163992..37164958,37165600..37165940, 37166261..37166378,37166481..37166545,37166831..37167139, 37167807..37168080,37168150..37168365,37168450..37168667, 37168842..37169661)) /locus_tag="TCM_026216" /product="Uncharacterized protein" /note="quality class is medium-expresste, express is medium, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.41 coverage" CDS 37164647..37164847 /locus_tag="TCM_026215" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10950.1" /translation="MDISPCLLLVILIHGLVLQTSHASTKLPVMPQALDVHDMDTVKL SQPKLSAQMKVEIGRRIGKPIR" CDS complement(join(37164902..37164958,37165600..37165940, 37166261..37166378,37166481..37166545,37166831..37167139, 37167807..37168080,37168150..37168365,37168450..37168667, 37168842..37169232)) /locus_tag="TCM_026216" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10951.1" /translation="MHQIMNLTREFKTLKMRNDEGIQANFDRVLRIVNELRLLGEVVT ERRIVAKFLISLLENFESKITSLEGFEDLTKLTMNELINNLQALEQKRAMRSEYIENA LVAKTKGLKVKKESSKKTNQKGKNKSGEAVAEQENNDDEVLFMAKMEEDLEKTNIWLL DSACSHHLTSNKGIFTTLDNSFQSKVKIGDENFLKVLEVGIVKLAEKHFALPFKDQLC TVFDSHGDEMFIVEMKNYCYPLNLAGTTHLALYNEHDLSETWHRILGHVNYTSLSLML GKQTRKSFPKVNKWKAFGKLELVRTDRSGPMKNSPLNGSKYYILFIDDFTKYCWVYFI KQKSGVLEKFVQFTALVENFSNSTIKTLISDNAEPSNFAEVSKENQWRATIEAEIGMI KKNNTWILVDRPSNQNLIGVKWIFKTKLNPDGFVNKHKARLVVKGFAQVYGVDYMETF APVARHDTIRLLAALSAKEDDLLITDLESDCLIKFKTDMLKDLLKKFRMDYCKVVRTP LATGSRFCIDDGVAKANETLDKTEAEYIAITATTNQALWLRKVLADLNFPQIKGTLIR VDNQSTMAIARNPVQHGRTKHIRVKFRALKAAVKEGEIQLEYCHIDDQVADIFTKGLG AKPFEFLREKLGAYPSGIKEAVAAAQVMVEEAVELLDC" mobile_element 37165091..37170145 /note="source:INTACT252_F184_scaffold_5-int 1 5055" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(37170684..37170846) /note="source:CACAO_PIF_E119_scaffold_3 4478 4640" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(37185084..37186811) /locus_tag="TCM_026218" /note="dbxref CacaoGD:Thecc1EG026218" mRNA complement(join(37185084..37185716,37186615..37186811)) /locus_tag="TCM_026218" /product="Trypsin family protein with PDZ domain, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0018s04170.1" /inference="similar to AA sequence:Phytozome:POPTR_0018s04170.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete" CDS complement(37185369..37185716) /locus_tag="TCM_026218" /codon_start=1 /product="Trypsin family protein with PDZ domain, putative" /protein_id="EOY10952.1" /db_xref="Phytozome:POPTR_0018s04170.1" /translation="MLGVHHPYLGIEFTNLYAVDLATSEIIIQQFPHISNGVMVEKVA AESPAAHAGLLPSDVNIEFRGNVIRSSPELFGMVWDKTGESLEILVMRAYLGLCLTLI FVVHEVEQDYYNS" mobile_element 37185858..37185942 /note="source:CACAO_M_S_E5234_F276_scaffold_1 2891 2975" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 37188085..37193067 /note="source:INTACT622_F276_scaffold_7-int 1 5028" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 37193067..37193227 /note="source:CACAO_Mutator_E1376_scaffold_6 1863 2022" /mobile_element_type="transposon:TIR/Mutator" mobile_element 37193346..37193511 /note="source:CACAO_Mutator_E1376_scaffold_6 1862 2027" /mobile_element_type="transposon:TIR/Mutator" mobile_element 37193508..37196049 /note="source:INTACT622_F276_scaffold_7-int 5024 7628" /mobile_element_type="retrotransposon:LTR/Copia" gene 37195796..37197534 /locus_tag="TCM_026220" /note="dbxref CacaoGD:Thecc1EG026220" mRNA join(37195796..37195984,37196636..37197534) /locus_tag="TCM_026220" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026225t1" /note="quality class is weak-utrpoor, express is weak, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.29 coverage" CDS 37196794..37197057 /locus_tag="TCM_026220" /note="paralog of Thecc1EG026225t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10953.1" /translation="MNIGNSWLVISCVLIVGILLSHDTHMIVATESVSGSSFDGIPSH DFPSKFNVVSKEKVIKPDPPPPPPPAGGGPIQPISSNLLSSPP" gene 37199796..37200283 /locus_tag="TCM_026222" /note="dbxref CacaoGD:Thecc1EG026222" mRNA 37199796..37200283 /locus_tag="TCM_026222" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026220t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.58 coverage" CDS 37199859..37200140 /locus_tag="TCM_026222" /note="paralog of Thecc1EG026220t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10954.1" /translation="MNIGNSWLLISCMFIVGILLSHDTHMIAATEGVSGSSFDGIPSH DFPSKFNVMPKRRALRPDPPPSPPPSLNPPPHQRFLPAPRSPLSPPIST" mobile_element complement(37203389..37204487) /note="source:CACAO_M_S_E16683_F28_scaffold_2 1632 2746" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(37204683..37204795) /note="source:CACAO_M_S_E31635_F14_scaffold_3 3189 3243" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 37207706..37208327 /locus_tag="TCM_026224" /note="dbxref CacaoGD:Thecc1EG026224" mRNA 37207706..37208327 /locus_tag="TCM_026224" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026222t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.64 coverage" CDS 37207761..37208042 /locus_tag="TCM_026224" /note="paralog of Thecc1EG026222t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10955.1" /translation="MNIGNSWLLISCMLIIGILLSHDAHMIGATEGVSGSSFGGIPSH DFPSKFNVVSKKSARRPDPPRPPPPRRAPPIQPRILSPPPSPLSPPIST" mobile_element 37209311..37212024 /note="source:scaffold_5_CACTA_0618 1 2714" /mobile_element_type="transposon:TIR/CACTA" mobile_element 37214366..37215399 /note="source:scaffold_5_CACTA_0618 2715 3748" /mobile_element_type="transposon:TIR/CACTA" gene 37216027..37216703 /locus_tag="TCM_026225" /note="dbxref CacaoGD:Thecc1EG026225" mRNA 37216027..37216703 /locus_tag="TCM_026225" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026220t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.76 coverage" CDS 37216281..37216517 /locus_tag="TCM_026225" /note="paralog of Thecc1EG026220t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10956.1" /translation="MNIGNSWLLISCVLIVGILLSHDTHMIVATESVSGSSVDEIPSH DFPFKFNVVSREKALKPDPPPPPPPTGGPSIHSK" gene complement(37216819..37218379) /locus_tag="TCM_026226" /note="dbxref CacaoGD:Thecc1EG026226" mRNA complement(37216819..37218379) /locus_tag="TCM_026226" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004414t1" /note="quality class is weak-utrpoor, express is weak, homology is paralog medium, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.32 coverage" CDS complement(37217819..37218214) /locus_tag="TCM_026226" /note="paralog of Thecc1EG004414t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10957.1" /translation="MSLSAIWLDNLMKVTPRKTSKTKVKTRWSKPAEGSLKFMADEAS LGCPGDSGVGGILRDEHGNSLILFSNSTGNFDSNRAELLAVKEAVLIYASSRWCSSHP LLLECDNGNVVKWISNPQMVPWRLRKLVI" mobile_element 37221918..37222227 /note="source:MITE_CACTA_4 1 310" /mobile_element_type="transposon:TIR/MITE" gene 37223023..37223806 /locus_tag="TCM_026227" /note="dbxref CacaoGD:Thecc1EG026227" mRNA 37223023..37223806 /locus_tag="TCM_026227" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.35 coverage" CDS 37223292..37223519 /locus_tag="TCM_026227" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10958.1" /translation="MAAISYLLLLLLIHGAMFSYTAPTIEASKTGNSYHSKILQPPPS PRFNYRLSQTPKRCKLGAGLEFCEHVKQTSP" mobile_element complement(37225721..37225770) /note="source:scaffold_4_CACTA_0490 1108 1157" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(37226358..37226436) /note="source:scaffold_4_CACTA_0490 10 87" /mobile_element_type="transposon:TIR/CACTA" gene 37227797..37228468 /locus_tag="TCM_026228" /note="dbxref CacaoGD:Thecc1EG026228" mRNA 37227797..37228468 /locus_tag="TCM_026228" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.40 coverage" CDS 37227832..37228068 /locus_tag="TCM_026228" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10959.1" /translation="MATISYFLVFIMLIQGTIIFSNSIPMVDASRGLAYLENLTPPLS PPPSSKPSKSLDKTLPSRPPSPKANRPRTDSKTN" gene 37230427..37231004 /locus_tag="TCM_026229" /note="dbxref CacaoGD:Thecc1EG026229" mRNA 37230427..37231004 /locus_tag="TCM_026229" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026232t1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.45 coverage" CDS 37230469..37230735 /locus_tag="TCM_026229" /note="paralog of Thecc1EG026232t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10960.1" /translation="MATISYFLVFIMLIQGTIIFSNSIPMVEASRGLAYLENLTPPPP PPPPPPLSPPPSSNSSQPTRTLPSAPPSPTANSPSIDSKPIDPH" mobile_element 37231697..37232313 /note="source:INTACT803_F10_scaffold_6-int 1 615" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 37232309..37234233 /note="source:INTACT7F_F10_scaffold_1-int 2668 4603" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(37234218..37234601) /note="source:INTACT287_F193_scaffold_2-int 775 1157" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(37234533..37234546) /note="source:CACAO_M_E2975_F12_scaffold_1 759 829" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 37234547..37234609 /note="source:INTACT610_F272_scaffold_5-int 253 314" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(37235203..37236130) /note="source:CACAO_M_S_E99216_F90_scaffold_9 1 929" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 37236076..37236141 /note="source:CACAO_M_S_E32590_F18_scaffold_4 10451 10516" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(37236111..37236222) /note="source:CACAO_M_E70015_F10_scaffold_10 353 459" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 37236131..37236529 /note="source:CACAO_M_E44184_F10_scaffold_5 4549 4948" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(37236131..37236161) /note="source:INTACT605_F14_scaffold_8-int 9452 9479" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(37237765..37239326) /locus_tag="TCM_026231" /note="dbxref CacaoGD:Thecc1EG026231" mRNA complement(join(37237765..37238855,37239283..37239326)) /locus_tag="TCM_026231" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS complement(37238335..37238616) /locus_tag="TCM_026231" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10961.1" /translation="MEDTMEEQWRDEKRSTRGLGTMIESTEVAGESEDFKIKLSGVLN TSGDNENENMKQVKVEKKTTIYHKIRQHEMWTDNVEGSEPENEKKRKGI" gene 37240297..37240834 /locus_tag="TCM_026232" /note="dbxref CacaoGD:Thecc1EG026232" mRNA 37240297..37240834 /locus_tag="TCM_026232" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026229t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.78 coverage" CDS 37240334..37240579 /locus_tag="TCM_026232" /note="paralog of Thecc1EG026229t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10962.1" /translation="MASISYFLVFIMLIQGTIIFSNSIPMVEASRGLAYLENLTPPPP PSSSSSQLGRTLPSGPPSPTANSPSIDSKPIDPHKHP" mobile_element complement(37240910..37241065) /note="source:CACAO_Helitron_SS_E51_scaffold_6 4130 4306" /mobile_element_type="transposon:Helitron" mobile_element complement(37243371..37243546) /note="source:scaffold_1_CACTA_0016 1099 1272" /mobile_element_type="transposon:TIR/CACTA" gene complement(37245248..37246226) /locus_tag="TCM_026233" /note="dbxref CacaoGD:Thecc1EG026233" mRNA complement(37245248..37246226) /locus_tag="TCM_026233" /product="Ethylene-responsive transcription factor" /inference="alignment:exonerate- protein:2:ricco:29680.m001678" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026234t1" /inference="similar to AA sequence:ricco:29680.m001678" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g17221t00001" CDS complement(37245448..37246125) /locus_tag="TCM_026233" /note="dbxref ricco:29680.m001678; paralog of Thecc1EG026234t1" /codon_start=1 /product="Ethylene-responsive transcription factor" /protein_id="EOY10963.1" /db_xref="TAIR:AT3G23240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F1DGA5" /translation="MNSSYFQYPYSQFSPESSSSYVSQENLSLESFNYPPNQALPFNE NDSQEMLLLGVLNQAPASSFDTASVNNSRDDEVSSKANEEESTREISYRGVRRRPWGK YAAEIRDSTRNGVRVWLGTFDTAEAAALAYDQAALAMRGSLAILNFPMEKVYESLQEM NYGFEDGCSPVLTMKKRHSLKSKKGLMKKVKKEKEVRMENVVVLEDLGTDYLEELLSI SESSTLW" gene complement(37246289..37252072) /locus_tag="TCM_026234" /note="dbxref CacaoGD:Thecc1EG026234" mRNA complement(join(37246289..37246637,37249668..37249714, 37251302..37252072)) /locus_tag="TCM_026234" /product="Ethylene-responsive transcription factor" /inference="alignment:exonerate- protein:2:ricco:29680.m001678.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026233t1" /inference="similar to AA sequence:ricco:29680.m001678" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.30 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc6509t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc7720t1" CDS complement(join(37246420..37246637,37249668..37249714, 37251302..37251981)) /locus_tag="TCM_026234" /note="dbxref ricco:29680.m001678; paralog of Thecc1EG026233t1" /codon_start=1 /product="Ethylene-responsive transcription factor" /protein_id="EOY10964.1" /db_xref="TAIR:AT3G23240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F1DGA5" /translation="MDSSFFQYPNLQFSPAQSSSSYVSQENFSPEYFNYQNQALPFNE NDSQEMLLLGVLNQAPANYFDTTSVNSFGDDNEVNSQANEKGTGKEISYRGVRKRPWG KYAAEIRDSTRNGVRVWLGTFDTAEAAALAYDQAALAMRGPMAILNFPMDKVYESLQE MNYGFEEGYSPVLTMKKRYSMMAKRSGSKKKKEKEMVMENILVLEDLGADYLEELLSI SESSATPYWLEPALMINIQELSRIDVVHSDTLSVSSKVKQALSTLDWALRCGTMRPPK VAASAKWASPCLLNDIIKLTQDRLKISSDLAAMAHLLI" gene complement(37254763..37258452) /locus_tag="TCM_026235" /note="dbxref CacaoGD:Thecc1EG026235" mRNA complement(join(37254763..37257872,37258020..37258452)) /locus_tag="TCM_026235" /product="Serine-threonine protein kinase, plant-type, putative" /inference="alignment:exonerate-protein:2:frave:gene21424" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026239t1" /inference="similar to AA sequence:ricco:30147.m013738" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.49 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc2157t5_C2" CDS complement(join(37255411..37257872,37258020..37258347)) /locus_tag="TCM_026235" /note="dbxref ricco:30147.m013738; paralog of Thecc1EG026239t1" /codon_start=1 /product="Serine-threonine protein kinase, plant-type, putative" /protein_id="EOY10965.1" /db_xref="TAIR:AT2G34930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9R9B1" /translation="MRAVAISLFVFLLVIVATVISFCDGNSNVLCIESERQALLKFKH DLIDETNRLSSWIEGDQEDCCKWVGVLCDNWTGHVYELHLGLLSCRLDKVTTVAERDA CYRSMLGGAIPHKLGNLSKLHYLDLGRNYHLEAKTLQWVSGLPSLQYLDLSGVNFSGA TDWLQVANKLPSLVELHLSDCINLYNDPSIVSVNYTSLAVLDLSSNSLSAIPTWLFNL PSLVYINLNWNDIGGVIPNGFQNMSSLKFLDLSWNAFSPSSIPRWLYNLNHLQFLGLR SIGLQGNISSAIRNLSSVTHLDLSENMLEGTISNFLDSLCNLREMDLSRNKIHDEVSE IIQSLSKCNLDRLESLNMGVNKLSGHLTDALGRFKNLAYLSLRENFISGPIPFSIGQL GNLEYLDVGNNMLEGNLSEMHFSNLTRLTTFSASNNMLTFKPNSSWIPPFHCVNIDLG NLHLGPQFPQWLQFQKNLSILDISHAGISGVIPTWFWNLSTQYVHLNLSHNQLVGGIS YLPVTRLVDLSSNQFTGPLPPVLPSLGYLFLSTNFFSGSLSHFLCISSTKVRSLTILD IGSNLLSGEIPHCWEKWPALDVLKLANNNLTGKIPVSLGSLLSIRLLNLRNNSLFGEV PSAMQQIADLKILDLSENQFSGSVPAWMGENLTGLMVLNLRSNNFHGHIPDKICALHS LQILDLASNNISGAIPKCFSNLSAMATKNKTLWYFANGAIWDSFLSMSYFLDALLFTR GREFDYSTTLVLVTSIDLSANSLRGEISKELGNLVGLMSLNLSRNLLTGKIPENIGNM ESLESLDLSMNRLYGEIPSSFSGLNFLNHLNLSYNKLTGQIPLSTQLQSFDMFSYIGN HLCGPPVTKNCSANGATPNVTNAGSKGYKVNGLYVSIVLGFVIGFWAVVAPLFFIRSW RFAYYHKLDDVGRQL" gene complement(37263387..37269752) /locus_tag="TCM_026236" /note="dbxref CacaoGD:Thecc1EG026236" mRNA complement(join(37263387..37264238,37265348..37265698, 37265856..37266386,37266494..37267606,37269395..37269752)) /locus_tag="TCM_026236" /product="Disease resistance family protein / LRR family protein, putative" /inference="alignment:exonerate- protein:2:frave:gene19037.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026239t1" /inference="similar to AA sequence:ricco:30147.m013738" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.30 coverage" gene 37263422..37264201 /locus_tag="TCM_026237" /note="dbxref CacaoGD:Thecc1EG026237" mRNA 37263422..37264201 /locus_tag="TCM_026237" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.22 coverage" CDS 37263780..37264019 /locus_tag="TCM_026237" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10967.1" /translation="MKTFQSFGAGCLMGFVLSSCCTTSSGDSRNANRRNLRGFHHRVG SSTSQEIPMTRCCRRCSLVSFPLGDFMTNLMTAAP" CDS complement(join(37263988..37264238,37265348..37265698, 37265856..37266386,37266494..37267606,37269395..37269629)) /locus_tag="TCM_026236" /note="dbxref ricco:30147.m013738; paralog of Thecc1EG026239t1" /codon_start=1 /product="Disease resistance family protein / LRR family protein, putative" /protein_id="EOY10966.1" /db_xref="TAIR:AT2G34930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B7SWJ3" /translation="MHFPGARYAVILLLGVGFSQFHPSPSWRVAGIGCPFFIGVEGHA EGVGSRLSWGSLLKVVHAFSLLRLLAFRAMQPRLATAISYCDGKSNVLCIESERQALL KFKHDLIDHSNRLSSWVEGDYEDCCKWVGVLCDNRTGHVNQLHLGFLIPDEHAPDAVW EAYGRSKLGRKINPSLLDLKHLSFLDLSNNYFDGMQIPEFIGSLKRLTYLNLSGASFG GAIPHKLGNLSKLHYLDLGHNFLLEAKTLQWVSSLPSLRYLDLSRVNLSKATDWLQVT NKLPSLVELHLSGCIDLNNDPSPVSVNYTSLAVLDLSSDMLSSIPTWIFSLPSLVSID LSGNSIGTVIPNGFRNMSSLKFLDLSYSLSSPSIPSWLSNLNHLQFLGLSSIGLQGNI WSAIGNLSSVTHLDLSDNMLEGIILKFLESLCNLREIDLSWNEIDHDVSEIIQSLSRS LEVLDVSDNQLTAPIPMRGLSSLKYLDVCNNRINESLPQSVGQLGNLEILDVSNNMLE GNVSEMHFSNLTRLRFLKASNNMLTFKPKPSWIPPFSCKVIELGHWHLGPQFPQWLQF QKNLYVLDISHAGISGIIPTWFSTFSTYSESINLSHNQLVSGISYLPDSLLLDLSSNQ LSGEIPDCWENRITSILNLANNNLTGIIPRSFGSMPSLESLNLRSNNLFGKIPSALQD FAKLMILDLSENQFNGSIPAWMGQKLSQLVVLNLRSNNFHGNIPDQICALHSLQILDP GADRAIPKCLSNLSAMATKNKTQFPVTSDGMTTIIWDARVVMKGREDDYSTTLGLVTS IDLSANNLTGEISKELGNLMGLRSLNLS" mobile_element 37264268..37265359 /note="source:MITE_hAT_22 1 1092" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(37268409..37268491) /note="source:scaffold_3_CACTA_0377 2107 2191" /mobile_element_type="transposon:TIR/CACTA" mobile_element 37269788..37269885 /note="source:CACAO_PIF_E119_scaffold_3 2166 2267" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(37269799..37283212) /locus_tag="TCM_026239" /note="dbxref CacaoGD:Thecc1EG026239" mRNA complement(join(37269799..37273486,37275262..37275361, 37277541..37277637,37277705..37277861,37277997..37278218, 37283069..37283212)) /locus_tag="TCM_026239" /product="Disease resistance family protein / LRR family protein, putative" /inference="alignment:exonerate- protein:2:ricco:29929.m004690" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026235t1" /inference="similar to AA sequence:ricco:29943.m000280" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.21 coverage" CDS complement(join(37270566..37273486,37275262..37275361, 37277541..37277637,37277705..37277861,37277997..37278213)) /locus_tag="TCM_026239" /note="dbxref ricco:29943.m000280; paralog of Thecc1EG026235t1" /codon_start=1 /product="Disease resistance family protein / LRR family protein, putative" /protein_id="EOY10968.1" /db_xref="TAIR:AT2G34930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWY1" /translation="MDTNSNWCLDSASTTHICYQKDCFDLLQEWVVGNLTLGNKSIVK VMGLGVVKIKMFDGVVCSLGGVAYVPKMQCEASKGWEQCTGDGSYQSEILFVEEVMKG SHGVDDGEMTKNLACNELEGSSRIECWTMLDSVCAIVVIIKANDLESLILGELFKVSL KKAGLSKNLDNPAMKFWHQGVGGQSPIMQGATSISFCDGKSNVLCIESERQALLKFKH DLIDHSNSLSSWVEGDQEDCCRWVGVLCDNRTGHVYELQLGLLSSSPHEPKPAPDHPK WIVAYDRPKLGGKINPSLLDLKHLSFLDLSNNDFGGIQIPEFIGSLKSLTYLNLSGAN FGGAIPHQLGNLSKLHYLDLGHNSLSEAKTLQWVSGLPSLQYLDLSQVDLSKATDWLQ VTNKLPYLVELHLSDCNLNNDPSPVSVNYSSLTVLDLSMNMLSSVPMSMFSLRSLVSL DLSDNSFEGPIPGGFQNMSSLKVLDLSQNSFNSSIPIGNLSSLTYLDLSENRVEGIVP KFLESLCNLRVIDLSSNEIRHEVSEIIQSLTKCNLNRFESLNLASNKLSGHLTDQLRQ LKSLVYLSLRGNSISGLIPFSIGKLSSLKFLDVSENQLNGSLPQSLGQLGDLESLDVG VNMLEGNVSEMHFSNLTRLRLLRASNNMLTFKPNSSWIPPFFSEGIELGNWHLGPQFP QWLQFQKNLLVLDISDARISGVIPTWFWDLSTQFVHLNLSHNQLVGGISYLPGSFLVD LSSNQFNGRLPRVSSYLRFLFLSKNLFSGPLYDFVCNFSTKLQPLTILDIGSNLLFGE IPHCWENLPYLELLNLENNNLTGKIPRSLGFLGHIRSLNFRNNSLFGELPSTLQHSVH LSILDLSANQFTGSIPAWMGDKLSQLVVLNLRSNNFRGNIPHKICALHSVQILDLASN NISGAIPKCLSNLSAMATKSKTQIVGMNGYILDARVVTKGREDDYSTILGLVTSIDLS ANNLTGEISKDLGNLIGLRSLNLSGNLLTGKIPENIGNMESLESLDLSMNRLYGEIPS SFSGLNFLNHLNLSYNNLTGQIPSSTQLQSFEMFSYIGNHLCGPPVTKNCSANGVTPN VTNGGSSEGSDHGPKVNGLYVSIGLGFVMGFWGVVAPLFFIRSWRLAYYQKLDDVGRK LYVFWATTGRSSFGCVG" mobile_element 37275109..37275476 /note="source:CACAO_on_E459_scaffold_2 122 508" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 37275148..37276330 /note="source:INTACT555_F251_scaffold_2-int 10418 11595" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(37276193..37276783) /note="source:INTACT622F_F362_scaffold_4-int 10809 11352" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 37276971..37279562 /note="source:CACAO_M_E44240_F74_scaffold_5 1 2592" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(37283261..37293952) /locus_tag="TCM_026241" /note="dbxref CacaoGD:Thecc1EG026241" mRNA complement(join(37283261..37283599,37289716..37293069, 37293789..37293952)) /locus_tag="TCM_026241" /product="Disease resistance family protein / LRR family protein, putative" /inference="alignment:exonerate- protein:2:frave:gene21424.6" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026239t1" /inference="similar to AA sequence:ricco:29943.m000280" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.29 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc2872t1_C2" mobile_element 37289560..37289616 /note="source:CACAO_M_E59539_F98_scaffold_9 2051 2107" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(37290008..37293058) /locus_tag="TCM_026241" /note="dbxref ricco:29943.m000280; paralog of Thecc1EG026239t1" /codon_start=1 /product="Disease resistance family protein / LRR family protein, putative" /protein_id="EOY10969.1" /db_xref="TAIR:AT2G34930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GWY1" /translation="MNANMRAVTIFIIGFLTLAATGITFCDGKSSVLCIESERQALLK FKQDIIDRSNRLSAWADGGDCCNWVGVSCDNLTGHVYKLDLRPSSISDYASDAEIGVY WRSLLRGRINPSLLLLKHLSHLDLSLNNFGGLQIPQFLGSMESLTYLDLSKAGFGGAL PHQLGNLSKLQHLNLGVTNFRYPLVEARNLQWLSGLSSLQYLDLSGVDLSKATDWLQV TNKLPSLVELHLSACFLDNDPSPITVNYTSLSTLDLSNNYIFPSVPMWIFSLGSLVSL DLSVNSFEGLIPNSFQNMSSLKFLDLSINSFNSSIPGWLFSLNHLEFLSLRGNLLQGK IPTAIGNLSSIISLDLAGNQLEGILPTSVENLFNLRQLDLSDNKIDQETSEVLQSLSR CCSDDLRSLNMANNNLTGHLSDELGQFKSLSNLFLSQNSISGLIPASLGNLSSLKYID ISDNQLDGSLPQSLGQLMSLEYLNIAYNLLEGVVSEVVFSNLTRLRVFKATQNKLKFE AKSSWAPPFQCQTIEMGYWFLGPKFPTWLQFQTDLSTLDISSAGISDVVPSWFWNFTP KLVSLNISHNQLEGEIPFLSVHKLVDLRSNRFTGPLPRVLPDVATLFFSNNSFSGSLS HFLCDYELGEPKLFLLQLETNLLSGDIPDCWEKWRGIQVLNMGNNNLTGKIPDSLGSL GFMFLNLRNNKLSGELPLSLQNNTRLFMLDVGENQFSGSIPKWMGESLSNLVILSLRS NSFAGHIPEELCQLSSLQILDLGDNKISGAIPKCFKDFTAMATKPNNTDAVIDFFVEG EFIRSELLVMKGRVNEYSTTLSLVTTMDLSNNNLVGEIPKELASLAGLQFLNLSRNSF TGRIPDHIGNMRLLESLDFSKNHLQGSIPASFSNLNFLSHLNLSYNNLRGRIPTSTQL QSFDRFSYIGNQLCGPPVTENCSGKIETPTNVTNEGGHEEDEGWFEKYGIYVTVVLGY VVGFWGVVAPLYFIKSWGLAYYEKVDAIGRKLSNLWGRLVPNCT" gene 37294053..37296359 /locus_tag="TCM_026242" /note="dbxref CacaoGD:Thecc1EG026242" mRNA 37294053..37296359 /locus_tag="TCM_026242" /product="F7O18.2 protein" /inference="alignment:exonerate- protein:2:ricco:29680.m001677" /inference="similar to AA sequence:Phytozome:POPTR_0013s04210.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14904t1" CDS 37294109..37295620 /locus_tag="TCM_026242" /codon_start=1 /product="F7O18.2 protein" /protein_id="EOY10970.1" /db_xref="Phytozome:POPTR_0013s04210.1" /db_xref="TAIR:AT3G04550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SR19" /translation="MGPCTITTVLVGLLSFLNKAQREPIHFSCQIRQPWKALPGLPSP SFLLIFCLSIFFLTMLSSTSLKPITNPKNLVFSSFLNQNPSLFSFHPSFPLSKTLLKP ISATLIPSNPQPQQQQLYQPFRPPPSPLPSQFRSLDVAARLEVLANRGGLWFEYAPLI PSLYQEGFSPPSVEETTGISGVEQNRLIVAAQVRESLIQSKTDENVVSFFDTGGSELL YEIRLLSAKQRAEAARFILEHGLDPKGAQDLARAMKDFARRKTDKGWKSFDYQLPGDC LSFMYYRQSREHKNPSEQRTSALRQALKVAESESAKKELLEELECGEDGKEEKEEDLD YGVRVPVVRLKIGEVAEASSVVVLPVCKAEEKDREILQAPLECRSKGDFGVVEAEKGW NRWVVLPGWEPVVGLSNGGVVVAFGDARGLPWKANRWYKEEPILVVADRSRKEVEFDD GFYLVTVDSGELKVDRGSALKETGVKESLGTVVLVVRPPKEETDNQLSDEDWE" gene complement(37296364..37298218) /locus_tag="TCM_026243" /note="dbxref CacaoGD:Thecc1EG026243" mRNA complement(join(37296364..37296916,37297062..37297383, 37297476..37298218)) /locus_tag="TCM_026243" /product="2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400044125.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020848t1" /inference="similar to AA sequence:Phytozome:POPTR_0010s08410.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10442t2" CDS complement(join(37296665..37296916,37297062..37297383, 37297476..37298023)) /locus_tag="TCM_026243" /note="paralog of Thecc1EG020848t1" /codon_start=1 /product="2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein, putative" /protein_id="EOY10971.1" /db_xref="Phytozome:POPTR_0010s08410.1" /db_xref="TAIR:AT1G06620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C5K7" /translation="MEVESDLRKVLPAEEHDYDRAKDLKAFDDTKAGVKGLVDAGVAT IPRIFFMPPEDILSAQLDDQIDGLQVPVIDLGGINLDPAAHTDIVEMIRYASEKWGFF QIINHGIPQDVMNKVIAGVRRFHEQPKEVKMDFYSRENEKKVRFNSNYDLYKAKSANW RDTLFCVMAPNPPPPEEYPVVCRDILIEYSEHVQSLGQILLGLLSEALGLNPAHLADM GCMEGHGFVCHYYPACPEPERTLGHAKHCDPDFLTILLQDQIGGLQVLHEDHWIDVPP LEGALIINIGDLLQLISNDKFRSVEHRVLAKRAGPRISVACLFTTHFQPFNKLYGPIK ELLSADSPPLYKETLIKDYLNSFCSMGLDNDSALDFLRM" gene 37298693..37301277 /locus_tag="TCM_026244" /note="dbxref CacaoGD:Thecc1EG026244" mRNA join(37298693..37298922,37299048..37299142, 37299226..37299434,37299531..37299795,37299894..37300052, 37300188..37300490,37300722..37300897,37301001..37301277) /locus_tag="TCM_026244" /product="Phospholipase A 2A, IIA,PLA2A, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028166001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026246t2" /inference="similar to AA sequence:ricco:30170.m013915" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.48 coverage" CDS join(37298913..37298922,37299048..37299142, 37299226..37299434,37299531..37299795,37299894..37300052, 37300188..37300490,37300722..37300897,37301001..37301058) /locus_tag="TCM_026244" /note="dbxref ricco:30170.m013915; paralog of Thecc1EG026246t2" /codon_start=1 /product="Phospholipase A 2A, IIA,PLA2A, putative" /protein_id="EOY10972.1" /db_xref="TAIR:AT2G26560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2DSE9" /translation="MATDGKLITILSIDGGGVRGIIPRTILAFLESQLQKLDGDNARI ADYFDFIAGTSTGGLVTAMLTSPNENNRPLFAAKDINKFYLQESPHIFPQESESPQQL VAMYNLSWYTTITKWVKSVWNKYSEPVYHSVEVFIRRIERAALRPKYDGFYLHKKIKE MLRDRRLSETLTNVIIPSFDIKLLQPIVFSTLKARHDDLENALLSDVCISTSAAPYFL PPYYFEINSSIGTKKFNMVDGGVAANNPTLLAISEVTREISSNREVPCLSNMDYGKLL VLSLGTGSSKSDEKLEVGDGQSWGLFSWFMGPNGTNPLFDVVLTATDDMVDIYLSVFF QGSSFKDNYLRIQIDSLKYTQAAADNSSQENLQNLEKIANELLKKPVAAVNLETGLYE PIEEAGTYEDALIKFAKRLTDERRHRQANCST" mobile_element complement(37304315..37304512) /note="source:CACAO_M_E49279_F74_scaffold_6 1743 1938" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 37304567..37311684 /locus_tag="TCM_026245" /note="dbxref CacaoGD:Thecc1EG026245" mRNA join(37304567..37304715,37304910..37305005, 37305115..37305331,37305449..37305530,37305789..37305947, 37306065..37306361,37306453..37306628,37306732..37307077, 37311510..37311684) /locus_tag="TCM_026245" /product="Phospholipase A 2A, IIA,PLA2A" /inference="alignment:exonerate- protein:2:ricco:29676.m001625" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026246t2" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400017707" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1448t5" CDS join(37304706..37304715,37304910..37305005, 37305115..37305331,37305449..37305530,37305789..37305947, 37306065..37306361,37306453..37306628,37306732..37306789) /locus_tag="TCM_026245" /note="paralog of Thecc1EG026246t2" /codon_start=1 /product="Phospholipase A 2A, IIA,PLA2A" /protein_id="EOY10973.1" /db_xref="Phytozome:PGSC0003DMP400017707" /db_xref="TAIR:AT2G26560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AGL7" /translation="MATGKLITVLSIDGGAVRGIIPSKVLAFLESELQLETLDGDSAR IPDYFDFIAGTSTGGLVTAMLSSPDPDDQSKRPFSTEKILQFYKDESPNIFPQTTNRR GRTIEMSTLEPAVDAVVRLISSTSDLRSLRDFFAARADLEDVPLQNVCLSTSAAPYYL PLHKFEINSVNGSRKFNMVDGGIAANNPILLALSEVAKEKSLDGKAQCLDNMDCSKLL VLSLGTGSSKRNKKLEIVNENWGPLLWLWGDNGIPFLDVLMNAIDAMVDIYLSAFFQG TSFKDNYLRIQTDSLKDSKVGMDNSNQENLQNLENIGNALLEKPVSAMNLETGLLKPI RGAGTNRAAITKLAKRLSEERKCRLAQSST" mobile_element complement(37308958..37309041) /note="source:CACAO_M_E10335_F369_scaffold_2 1391 1472" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 37308987..37309218 /note="source:CACAO_M_S_E14849_F156_scaffold_2 704 899" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(37309026..37309167) /note="source:CACAO_M_S_E90022_F9_scaffold_8 3015 3156" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(37309367..37309915) /note="source:CACAO_M_E53135_F19_scaffold_8 4701 5240" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(37309917..37310034) /note="source:CACAO_M_E52882_F369_scaffold_8 1382 1475" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 37310350..37310642 /note="source:CACAO_MITE100_scaffold_5 1 293" /mobile_element_type="transposon:TIR/MITE" gene 37312557..37315320 /locus_tag="TCM_026246" /note="dbxref CacaoGD:Thecc1EG026246" mRNA join(37312557..37312648,37312805..37312902, 37312988..37313202,37313320..37313611,37313706..37313864, 37313984..37314280,37314368..37314543,37314644..37315133) /locus_tag="TCM_026246" /product="Phospholipase A 2A, IIA,PLA2A isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028166001" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0102s00220.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026244t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400017707" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1447t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1447t2; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1448t5" mRNA join(37312559..37312902,37312988..37313202, 37313320..37313611,37313706..37313864,37313984..37314280, 37314368..37314543,37314644..37315320) /locus_tag="TCM_026246" /product="Phospholipase A 2A, IIA,PLA2A isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0102s00220.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026247t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400017707" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1447t2" CDS join(37312639..37312902,37312988..37313202, 37313320..37313611,37313706..37313864,37313984..37314280, 37314368..37314543,37314644..37314701) /locus_tag="TCM_026246" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG026247t1" /codon_start=1 /product="Phospholipase A 2A, IIA,PLA2A isoform 1" /protein_id="EOY10974.1" /db_xref="Phytozome:PGSC0003DMP400017707" /db_xref="TAIR:AT2G26560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O48723" /translation="MATGMLLYSHLPIWLLNVHSTLHAFPCLFSITHTSYNSIIITSC WMDPCLLWIDLEGKKLTTILSIDGGGVRGIIPATILAFLESELQKLDGKEARIADYFD FIAGTSTGGLVTAMLSSPDPDDPSNRPFSAGKILQFYFAESANIFPQKPKQPRHIDEM SRLEHAVNQFVQSMGSIPEDEYGRERLRFMFPDCRSLIDLVVRLWKFVFDPKFNGEKL KEVVEEKVGDRRLSETLTNVIIPSFDIKLLQTVVFSTLKAARDDLEDAPLQDVCLSTS AAPYYLPLHKFEINSVNRSRNFNMVDGGVAANNPTLLALSEVAKEMSLDGKAQCLDNM DCSKFLVLSLGTGSSKRNNKLEIVNENWGPLRWLWGDNGIPFLDVLMNAIDAMVDIYL SAFFRGASFEDNYLRIQTDSLNDSEIGMDNSNLENLQNLENIGNELLEKPVSAMNLET GLLKPIRGAGTNRAAIIKLAKRLSEERKRRLAQSSA" CDS join(37312639..37312648,37312805..37312902, 37312988..37313202,37313320..37313611,37313706..37313864, 37313984..37314280,37314368..37314543,37314644..37314701) /locus_tag="TCM_026246" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG026244t1" /codon_start=1 /product="Phospholipase A 2A, IIA,PLA2A isoform 2" /protein_id="EOY10975.1" /db_xref="Phytozome:PGSC0003DMP400017707" /db_xref="TAIR:AT2G26560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O48723" /translation="MATEGKKLTTILSIDGGGVRGIIPATILAFLESELQKLDGKEAR IADYFDFIAGTSTGGLVTAMLSSPDPDDPSNRPFSAGKILQFYFAESANIFPQKPKQP RHIDEMSRLEHAVNQFVQSMGSIPEDEYGRERLRFMFPDCRSLIDLVVRLWKFVFDPK FNGEKLKEVVEEKVGDRRLSETLTNVIIPSFDIKLLQTVVFSTLKAARDDLEDAPLQD VCLSTSAAPYYLPLHKFEINSVNRSRNFNMVDGGVAANNPTLLALSEVAKEMSLDGKA QCLDNMDCSKFLVLSLGTGSSKRNNKLEIVNENWGPLRWLWGDNGIPFLDVLMNAIDA MVDIYLSAFFRGASFEDNYLRIQTDSLNDSEIGMDNSNLENLQNLENIGNELLEKPVS AMNLETGLLKPIRGAGTNRAAIIKLAKRLSEERKRRLAQSSA" mobile_element 37315378..37315431 /note="source:scaffold_4_CACTA_0509 317 369" /mobile_element_type="transposon:TIR/CACTA" mobile_element 37316040..37316174 /note="source:CACAO_M_E34343_F19_scaffold_4 2654 2790" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 37317157..37320172 /locus_tag="TCM_026247" /note="dbxref CacaoGD:Thecc1EG026247" mRNA join(37317157..37317498,37317573..37317786, 37317938..37318155,37318236..37318394,37318517..37318822, 37319203..37319348,37319453..37320172) /locus_tag="TCM_026247" /product="Phospholipase A 2A, IIA,PLA2A, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01028166001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026246t1" /inference="similar to AA sequence:ricco:30170.m013915" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.42 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc593t4" CDS join(37317235..37317498,37317573..37317786, 37317938..37318155,37318236..37318394,37318517..37318822, 37319203..37319348,37319453..37319510) /locus_tag="TCM_026247" /note="dbxref ricco:30170.m013915; paralog of Thecc1EG026246t1" /codon_start=1 /product="Phospholipase A 2A, IIA,PLA2A, putative" /protein_id="EOY10976.1" /db_xref="TAIR:AT2G26560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2DSE9" /translation="MATGMSLFSHLPIWLLNVHSALHAFPCLFSITYTSYNSIIITSC WMDPCLLWIDLEGKKLTTILSIDGGGVRGIIPATILAFLESELQNKSWMVRRQGLQIT LISLLGLALEALSQPCSPHQMMRIDLCLLQKRSSNFTLNTARKSFLKHQIQHSLEGLV WEKVVVPAYHDAESFIHWAEQAIFRPKYDGVHLKETIEEMLEDRKLCQTLTNVIIPSF DIRLLQPTVFSNLKARRDNLEDARLADVCRSTSAAPYYIPPCKFEINSFSYTRRFNMV DGGVAANNPTLLAMAEASKEMSLNEEDHFLKKMDCSKLLVLSLGTGSSKRNNKLEVDY PKLWGLFKSFQGPDDTVPFSDVLLTATDDMVDIYLSSFFQGSSNFKTNYLRIQLGQLN QRNLENLEKIGNELLKTTASKLNFETGTIEPIPEAGTNEERLIWFTKQLSDEKRGRQA KSCN" gene complement(37319862..37321486) /locus_tag="TCM_026248" /note="dbxref CacaoGD:Thecc1EG026248" mRNA complement(join(37319862..37320797,37321443..37321486)) /locus_tag="TCM_026248" /product="Rotamase cyclophilin 2" /inference="alignment:exonerate-protein:2:frave:gene29926" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006687t1" /inference="similar to AA sequence:ricco:29680.m001676" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14907t1" CDS complement(37320252..37320776) /locus_tag="TCM_026248" /note="dbxref ricco:29680.m001676; paralog of Thecc1EG006687t1" /codon_start=1 /product="Rotamase cyclophilin 2" /protein_id="EOY10977.1" /db_xref="TAIR:AT3G56070.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q38900" /translation="MSNPKVFFDILIGKAKSGRIVMELFADVVPKTAENFRALCTGEK GIGISGKPLHYKGSTFHRIIPSFMCQGGDFTRGNGTGGESIYGMKFADENFKLKHTGP GCLSMANAGPNTNGSQFFICTEKTSWLDGKHVVFGKVVDGYSVVKEMEKAGSESGRTL QPVVIEDCGQLKEN" gene 37321997..37325421 /locus_tag="TCM_026249" /note="dbxref CacaoGD:Thecc1EG026249" mRNA 37321997..37325421 /locus_tag="TCM_026249" /product="Tetratricopeptide repeat-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g25720.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG044693t1" /inference="similar to AA sequence:Phytozome:Glyma03g25720.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc3613t1" CDS 37322588..37324939 /locus_tag="TCM_026249" /note="paralog of Thecc1EG044693t1" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative" /protein_id="EOY10978.1" /db_xref="Phytozome:Glyma03g25720.1" /db_xref="TAIR:AT3G12770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5M1" /translation="MDLTIATTKQPTLSRSLLASTIKIIQIPKSGTLECQRQSPFQVL AEHPTLEQTRQIHAHMVKTHFNHTKLSPSAQLNFLITSYTRNSQPHNTLAIYAYLRRT DYEVDNFMVPAILKACSFVSMTQLGKEIHGFALKNGLIEDVFVSNALIQMYSECRSAV SARLLFDNMDERDVVSWSTMIRSYVRSKLYREALDIVRKMHILQVRPSEVAMISMVNL FAELKDIEMGRAMHAYVTRNLEKMGVHLTTAFIDMYAKSGNLASAGLLFHGLNQKSIV SWTAMIAGYIHCNKLEEGGKLFARMIEERIKPNEITLLSLVVECGFVGALELGKQIHA YISRNGICVSLALATALVDMYGKCGQIRNAKAVFDTVKNKDVMIWSAMIAAYAQAHCI DQALDLFVKMRDSGVRPNQVTMVTVLSLCAEAGALDMGKWVHTYIDRQVVEMDMILQT ALIEMYAKCGDIDGAWRLFRESKDQDIGMWNTMMAGFGMHGCGKEALELFSEMERVGA RPNDITFIGLLHACSHAGLVKEGRLFFEKMVHDFGLVPKVEHYGCMVDLLGRAGLLDE AYEMIKSMPIRPNTITWSALLAACKLHKNTVLGEMAARQLVYLEPQNCGYNVSMSNIY AVANRWNDVAGVRKAMKNKGMKKEPGLSSIEVDGYVHEFIMGDKAHPQIEKINDMVSE IGKKLKEAGYMADTSAVLKNIDKEEKETALNYHSEKLAMAFGLISTAPGTPIRVVKNL RVCNDCHAATKLLSKIYERVIIVRDRKRFHHFRDGTCSCGDYW" gene complement(37325067..37365104) /locus_tag="TCM_026250" /note="dbxref CacaoGD:Thecc1EG026250" mRNA complement(join(37325067..37325761,37325875..37326239, 37326847..37326936,37327015..37327316,37327940..37328680)) /locus_tag="TCM_026250" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036208001" /inference="similar to AA sequence:Phytozome:POPTR_0013s04180.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14926t1" mRNA complement(join(37325255..37325754,37325875..37326239, 37326847..37326936,37327015..37327316,37327940..37328290, 37350700..37350702,37365085..37365104)) /locus_tag="TCM_026250" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036208001" /inference="similar to AA sequence:Phytozome:POPTR_0013s04180.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc244t4_C2; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14926t1" mRNA complement(join(37325255..37325761,37325875..37326239, 37326847..37326936,37327015..37327316,37327940..37328286, 37352105..37352109,37365085..37365100)) /locus_tag="TCM_026250" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036208001" /inference="similar to AA sequence:Phytozome:POPTR_0013s04180.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc244t3_C2; alternateUTRof:Thecc1EG026250t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14926t1" CDS complement(join(37325497..37325761,37325875..37326239, 37326847..37326936,37327015..37327316,37327940..37328141)) /locus_tag="TCM_026250" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY10979.1" /db_xref="Phytozome:POPTR_0013s04180.1" /db_xref="TAIR:AT3G04560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5M0" /translation="MGDNLFEGLPPPSQQQQLEEKKEEEQGRDQNLLSLKTSSSNDNK EASPNPVLKSALKRHKPTESNPEVYFPAAAPEKRLRFKTTTDASETQVIEAMQKIASH IKNPTKFAKASKLVIQLIKAGSVKAGTSDHFFAILEAAMSSTTSCTDPSVGGDYHSLF SAAQDAAEYLNKKQKNQLTVWTFRAVVANDLLTDDSFVFSKTASRLKDAISSLPIATE DDDIDEAATLKDETEIGNDDDNNKEAIVAPAEENKKDESDPFGLDALIPRSGNKDDRT KGKKDVAAKSRKEDEEETKRFLKSQREALITCLEIAARRYKTPWCQTVIDILVKLAFD NVARFTSRQRDAIEKLWASVREQQIRRKQGKSVTGKLDVNAFEWLQQKYSTEKISIRH SVGASGDRRCQQWLG" CDS complement(join(37325497..37325761,37325875..37326239, 37326847..37326936,37327015..37327316,37327940..37328141)) /locus_tag="TCM_026250" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY10980.1" /db_xref="Phytozome:POPTR_0013s04180.1" /db_xref="TAIR:AT3G04560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5M0" /translation="MGDNLFEGLPPPSQQQQLEEKKEEEQGRDQNLLSLKTSSSNDNK EASPNPVLKSALKRHKPTESNPEVYFPAAAPEKRLRFKTTTDASETQVIEAMQKIASH IKNPTKFAKASKLVIQLIKAGSVKAGTSDHFFAILEAAMSSTTSCTDPSVGGDYHSLF SAAQDAAEYLNKKQKNQLTVWTFRAVVANDLLTDDSFVFSKTASRLKDAISSLPIATE DDDIDEAATLKDETEIGNDDDNNKEAIVAPAEENKKDESDPFGLDALIPRSGNKDDRT KGKKDVAAKSRKEDEEETKRFLKSQREALITCLEIAARRYKTPWCQTVIDILVKLAFD NVARFTSRQRDAIEKLWASVREQQIRRKQGKSVTGKLDVNAFEWLQQKYSTEKISIRH SVGASGDRRCQQWLG" CDS complement(join(37325754,37325875..37326239, 37326847..37326936,37327015..37327316,37327940..37328141)) /locus_tag="TCM_026250" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY10981.1" /db_xref="Phytozome:POPTR_0013s04180.1" /db_xref="TAIR:AT3G04560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5M0" /translation="MGDNLFEGLPPPSQQQQLEEKKEEEQGRDQNLLSLKTSSSNDNK EASPNPVLKSALKRHKPTESNPEVYFPAAAPEKRLRFKTTTDASETQVIEAMQKIASH IKNPTKFAKASKLVIQLIKAGSVKAGTSDHFFAILEAAMSSTTSCTDPSVGGDYHSLF SAAQDAAEYLNKKQKNQLTVWTFRAVVANDLLTDDSFVFSKTASRLKDAISSLPIATE DDDIDEAATLKDETEIGNDDDNNKEAIVAPAEENKKDESDPFGLDALIPRSGNKDDRT KGKKDVAAKSRKEDEEETKRFLKSQREALITCLEIAARRYKTP" mobile_element 37328456..37328583 /note="source:scaffold_5_CACTA_0608 9785 9877" /mobile_element_type="transposon:TIR/CACTA" gene 37330527..37331841 /locus_tag="TCM_026251" /note="dbxref CacaoGD:Thecc1EG026251" mRNA 37330527..37331841 /locus_tag="TCM_026251" /product="AT-hook motif nuclear localized protein 20" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036210001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020823t1" /inference="similar to AA sequence:Phytozome:GSVIVT01036210001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g10350t00001" CDS 37330757..37331650 /locus_tag="TCM_026251" /note="paralog of Thecc1EG020823t1" /codon_start=1 /product="AT-hook motif nuclear localized protein 20" /protein_id="EOY10982.1" /db_xref="Phytozome:GSVIVT01036210001" /db_xref="TAIR:AT4G14465.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GWQ2" /translation="MANRWWAGQVGLQGIETSATSSSPMKKPDLGISMTNNGETGSGG TGEEEEEKEHSDEHREGAIEVSTRRPRGRPPGSKNRPKPPIFVTRDSPNALRSHVMEI ANGSDVAETLAHFARRRQRGVCVLSGSGTVTNVTLRQPSAPGAVMALHGRFEILSLTG AFLPGPAPPGSTGLTIYLAGGQGQVVGGIVVGSLVASGPVMIIAATFSNATYERLPLE EEEEGVSGAQGQLGGGGGSGGSPPGIGSGSGGHQQGGIGGADGSGLPVYNNLPPNLVP NGGQLSHEAYAWAHGGRPPYQ" gene complement(37338124..37341992) /locus_tag="TCM_026252" /note="dbxref CacaoGD:Thecc1EG026252" mRNA complement(join(37338124..37339021,37339130..37339205, 37339534..37339676,37339854..37339956,37340419..37340486, 37340583..37340794,37341388..37341497,37341609..37341992)) /locus_tag="TCM_026252" /product="Methyltransferase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036211001" /inference="similar to AA sequence:Phytozome:POPTR_0013s04160.3" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00144t00002" mRNA complement(join(37338279..37338905,37339130..37339205, 37339534..37339676,37339854..37339956,37340419..37340486, 37340583..37340794,37341388..37341497,37341609..37341992)) /locus_tag="TCM_026252" /product="Methyltransferase family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036211001" /inference="similar to AA sequence:Phytozome:POPTR_0013s04160.3" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:PASA:2:TSA:puevd3b025392t1a2; inference alignment:Newbler:10:TSA:cgbaP1_g00144t00002" mRNA complement(join(37338279..37338905,37339082..37339205, 37339534..37339676,37339854..37339956,37340419..37340486, 37340583..37340794,37341388..37341497,37341609..37341992)) /locus_tag="TCM_026252" /product="Methyltransferase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036211001" /inference="similar to AA sequence:Phytozome:POPTR_0013s04160.3" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:PASA:2:TSA:puevd3b025392t1a3; inference alignment:Newbler:10:TSA:cgbaP1_g00144t00002" mRNA complement(join(37338279..37338899,37339082..37339205, 37339534..37339676,37339854..37339956,37340419..37340486, 37340583..37340794,37341388..37341497,37341609..37341841)) /locus_tag="TCM_026252" /product="Methyltransferase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036211001" /inference="similar to AA sequence:Phytozome:POPTR_0013s04160.3" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05676t00001; alternateUTRof:Thecc1EG026252t2; inference alignment:Newbler:10:TSA:cgbaP1_g00144t00002" CDS complement(join(37338837..37339021,37339130..37339205, 37339534..37339676,37339854..37339956,37340419..37340486, 37340583..37340794,37341388..37341497,37341609..37341815)) /locus_tag="TCM_026252" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Methyltransferase family protein isoform 1" /protein_id="EOY10983.1" /db_xref="Phytozome:POPTR_0013s04160.3" /db_xref="TAIR:AT1G54650.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5L8" /translation="MSASETEASEYHSKDFNWETLRQEIENDPSLNYHLLPFPSPQQE EHHSRDSIKAWQKFHIQHSSGKFFKERRYLLKEFPELVSCEDGCKVLEVGCGNGSTAL PILRGNEKIILYACDCSNETLERAKEFVAASNVISVEHRFHPFYCDFVTTGFPKWLAC DYCREMFALKGQNYLSDIREKRTHETDICCVGGVDFITLIFTLSAVPLQTMPTAIREC FSVLKPGGLLLFRDYGLYDMTMLRFKPEQRVRFREYMRSDGTRSYFFCPDNVRNLFIC AGFIELEIEYCCVKSVNRRNGKSMQRVWVHDEHVSSLHIAYGDRFFAYQNIDKLTYLC KFCIPFDSWNKLQEIAEGPCLSLCVPVSASNFM" CDS complement(join(37338889..37338905,37339130..37339205, 37339534..37339676,37339854..37339956,37340419..37340486, 37340583..37340794,37341388..37341497,37341609..37341815)) /locus_tag="TCM_026252" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Methyltransferase family protein isoform 4" /protein_id="EOY10986.1" /db_xref="Phytozome:POPTR_0013s04160.3" /db_xref="TAIR:AT1G54650.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5L8" /translation="MSASETEASEYHSKDFNWETLRQEIENDPSLNYHLLPFPSPQQE EHHSRDSIKAWQKFHIQHSSGKFFKERRYLLKEFPELVSCEDGCKVLEVGCGNGSTAL PILRGNEKIILYACDCSNETLERAKEFVAASNVISVEHRFHPFYCDFVTTGFPKWLAC DYCREMFALKGQNYLSDIREKRTHETDICCVGGVDFITLIFTLSAVPLQTMPTAIREC FSVLKPGGLLLFRDYGLYDMTMLRFKPEQRVRFREYMRSDGTRSYFFCPDNVRNLFIC AGFIELEIEYCCVKSVNRRNGKSMQRVWVHAAGNC" CDS complement(join(37339083..37339205,37339534..37339676, 37339854..37339956,37340419..37340486,37340583..37340794, 37341388..37341497,37341609..37341815)) /locus_tag="TCM_026252" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Methyltransferase family protein isoform 2" /protein_id="EOY10984.1" /db_xref="Phytozome:POPTR_0013s04160.3" /db_xref="TAIR:AT1G54650.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5L8" /translation="MSASETEASEYHSKDFNWETLRQEIENDPSLNYHLLPFPSPQQE EHHSRDSIKAWQKFHIQHSSGKFFKERRYLLKEFPELVSCEDGCKVLEVGCGNGSTAL PILRGNEKIILYACDCSNETLERAKEFVAASNVISVEHRFHPFYCDFVTTGFPKWLAC DYCREMFALKGQNYLSDIREKRTHETDICCVGGVDFITLIFTLSAVPLQTMPTAIREC FSVLKPGGLLLFRDYGLYDMTMLRFKPEQRVRFREYMRSDGTRSYFFCPDNVRNLFIC AGFIELEIEYCCVKSVNRRNGKSMQRVWVHGKFQKPTCIYRPGSS" CDS complement(join(37339083..37339205,37339534..37339676, 37339854..37339956,37340419..37340486,37340583..37340794, 37341388..37341497,37341609..37341815)) /locus_tag="TCM_026252" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Methyltransferase family protein isoform 2" /protein_id="EOY10985.1" /db_xref="Phytozome:POPTR_0013s04160.3" /db_xref="TAIR:AT1G54650.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5L8" /translation="MSASETEASEYHSKDFNWETLRQEIENDPSLNYHLLPFPSPQQE EHHSRDSIKAWQKFHIQHSSGKFFKERRYLLKEFPELVSCEDGCKVLEVGCGNGSTAL PILRGNEKIILYACDCSNETLERAKEFVAASNVISVEHRFHPFYCDFVTTGFPKWLAC DYCREMFALKGQNYLSDIREKRTHETDICCVGGVDFITLIFTLSAVPLQTMPTAIREC FSVLKPGGLLLFRDYGLYDMTMLRFKPEQRVRFREYMRSDGTRSYFFCPDNVRNLFIC AGFIELEIEYCCVKSVNRRNGKSMQRVWVHGKFQKPTCIYRPGSS" gene complement(37342328..37347225) /locus_tag="TCM_026253" /note="dbxref CacaoGD:Thecc1EG026253" mRNA complement(join(37342328..37343642,37344530..37346582)) /locus_tag="TCM_026253" /product="Signal transduction histidine kinase isoform 1" /inference="alignment:exonerate- protein:2:ricco:29680.m001671" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020821t1" /inference="similar to AA sequence:ricco:29680.m001671" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.34 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10502t1" CDS complement(join(37343100..37343642,37344530..37346269)) /locus_tag="TCM_026253" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29680.m001671; paralog of Thecc1EG020821t1" /codon_start=1 /product="Signal transduction histidine kinase isoform 1" /protein_id="EOY10987.1" /db_xref="TAIR:AT3G04580.2" /db_xref="UniProtKB/TrEMBL:UniRef50_E7D235" /translation="MLRALAQGVLISLFVISVSATDNEFPNCNCDDEGLWSIHSILEC QKVSDFLIAVAYFSIPIELLYFISCSSVPFKWVLLQFIAFIVLCGLTHLLNGWTYYGP HSFQLMLSVTIAKFLTALVSCATAITLLTLIPLLLKVKVRELFLRQNVLELDQEVGMM KKKKEASSHVRMLTQEIRKSLDKHTILYTTLVELSKTLDLYNCAVWMPNENGSLMNLT HELKASSSRSFHSIPTNDPDVMEIKESEGVRILRPDSALGLASGSGSDEAGAVAAIRM PMLHGSNFKGGTPESVETCYAILVLVLPSSNQGWSEPEMEIVEVVADQVAVALSHAAV LEESQLMRERLSQQNCVLQQARKNAMMASQARNSFQKVMSHGMKRPMHSILGLLSVFQ EEKMNFNQKIVIDTLVKTSSVLSTLINDVMEISAKDNGRFPLDMRPFSLHSMIKEASC LAKCLSVYKGFGFEVGVQSSLPHQVIGDEKRTFQVILHMVGYLLDVNNGGGTVLFRVL SDVSSQDKNDKINAWRSNTQDNYLYLRIEIGIRGGSSQADESVSTKHSSGGRHNDDEI KESLNFNMCKKLVQMMQGNIWVSTNSLGFAQSMTLLLRFQIQPYIQRTTFASVNSTEQ PNFNSRFRGLRVLLADDDDINRIVTKKLLEKLGCEVTSVSSGFECLSAVSHAENSFRI VVLDLHMPEMDGFEVAMRIRKYRSHNWPLIIALTASAEDNVRERCLQMGMNAVIQKPV VLQGMADEIQRVLQRAGEGI" mRNA complement(join(37343622..37344202,37344530..37347225)) /locus_tag="TCM_026253" /product="Signal transduction histidine kinase isoform 2" /inference="alignment:exonerate- protein:2:ricco:29680.m001671" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020821t1" /inference="similar to AA sequence:ricco:29680.m001671" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.18 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1267t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10502t1" CDS complement(join(37344047..37344202,37344530..37346269)) /locus_tag="TCM_026253" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29680.m001671; paralog of Thecc1EG020821t1" /codon_start=1 /product="Signal transduction histidine kinase isoform 2" /protein_id="EOY10988.1" /db_xref="TAIR:AT3G04580.2" /db_xref="UniProtKB/TrEMBL:UniRef50_E7D235" /translation="MLRALAQGVLISLFVISVSATDNEFPNCNCDDEGLWSIHSILEC QKVSDFLIAVAYFSIPIELLYFISCSSVPFKWVLLQFIAFIVLCGLTHLLNGWTYYGP HSFQLMLSVTIAKFLTALVSCATAITLLTLIPLLLKVKVRELFLRQNVLELDQEVGMM KKKKEASSHVRMLTQEIRKSLDKHTILYTTLVELSKTLDLYNCAVWMPNENGSLMNLT HELKASSSRSFHSIPTNDPDVMEIKESEGVRILRPDSALGLASGSGSDEAGAVAAIRM PMLHGSNFKGGTPESVETCYAILVLVLPSSNQGWSEPEMEIVEVVADQVAVALSHAAV LEESQLMRERLSQQNCVLQQARKNAMMASQARNSFQKVMSHGMKRPMHSILGLLSVFQ EEKMNFNQKIVIDTLVKTSSVLSTLINDVMEISAKDNGRFPLDMRPFSLHSMIKEASC LAKCLSVYKGFGFEVGVQSSLPHQVIGDEKRTFQVILHMVGYLLDVNNGGGTVLFRVL SDVSSQDKNDKINAWRSNTQDNYLYLRIEIGIRGGSSQADESVSTKHSSGGRHNDDEI KESLNFNMCKKLVQGICSKLPVSLGFFNLVWAILHILVFGYKKQVKKQLLMPLSFRGE IFSYEGV" gene complement(37348988..37354932) /locus_tag="TCM_026254" /note="dbxref CacaoGD:Thecc1EG026254" mRNA complement(join(37348988..37349091,37349165..37349453, 37349747..37349899,37350683..37350814,37352105..37352157, 37354018..37354932)) /locus_tag="TCM_026254" /product="AT hook motif DNA-binding family protein" /inference="alignment:exonerate- protein:2:TAIR:AT3G04590.2" /inference="similar to AA sequence:Phytozome:GSVIVT01036214001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14926t2" CDS complement(join(37349027..37349091,37349165..37349453, 37349747..37349899,37350683..37350814,37352105..37352157, 37354018..37354375)) /locus_tag="TCM_026254" /codon_start=1 /product="AT hook motif DNA-binding family protein" /protein_id="EOY10989.1" /db_xref="Phytozome:GSVIVT01036214001" /db_xref="TAIR:AT3G04590.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5L6" /translation="MEPNETQQHYFTTNTTTTVTTTPSPTNGLLPPSESGGSHHMVYP HPMPSAVTSPLEPARRKRGRPRKYGTPEQALAAKKTASSSSKERREQQQQQHQLALGG GGASLSGLSKKSQLVALGNAGQGFTPHVINVVAGEDVGQKIMMFMQQSKREICILSAS GTISNASLRQPATSGGNITYEGRFEIISLSGSYVRTETGGRTGGLSVCLSSADGQIIG GGIGGPLKAAGPVQVIVGTFVIDNKKDVSAGAKGDASGSKLPSPVGGTSVSNVGFRSA FETSGRNPIGGNDDHQSFGGSHFMMQPRGMHVAPRPSEWRSGLDDRTGFELTGKTGHG AHQSPENGDYDQIAD" mobile_element complement(37349653..37349740) /note="source:scaffold_10_CACTA_0137 6921 7010" /mobile_element_type="transposon:TIR/CACTA" mobile_element 37354370..37354426 /note="source:INTACT498_F231_scaffold_5-int 8394 8447" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(37355627..37357444) /locus_tag="TCM_026255" /note="dbxref CacaoGD:Thecc1EG026255" mRNA complement(join(37355627..37355887,37356158..37356296, 37356441..37356454,37356543..37356666,37356958..37357006, 37357107..37357179,37357325..37357380)) /locus_tag="TCM_026255" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s02250.1" /inference="similar to AA sequence:Phytozome:POPTR_0019s02250.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g01334t00002" mRNA complement(join(37355715..37355887,37356543..37356666, 37356958..37357006,37357107..37357179,37357325..37357444)) /locus_tag="TCM_026255" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s02250.1" /inference="similar to AA sequence:Phytozome:POPTR_0019s02250.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g01334t00002; inference alignment:Newbler:10:TSA:cgbaP1_g01334t00002" CDS complement(join(37355801..37355887,37356543..37356666, 37356958..37357006,37357107..37357179,37357325..37357342)) /locus_tag="TCM_026255" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY10991.1" /db_xref="Phytozome:POPTR_0019s02250.1" /db_xref="TAIR:AT2G14045.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PH87" /translation="MMRYKEEKEAKNETFRKYLESSGVLDALTKVLVALYEQNEKPSS ALEFVQQKLGGPTASEYEKLQTELSDLLAKYNELLGKHEETCKELVELKSLHSSPSAK ETTDGEALKDKDEV" CDS complement(join(37355801..37355887,37356158..37356296, 37356441..37356454,37356543..37356666,37356958..37357006, 37357107..37357179,37357325..37357342)) /locus_tag="TCM_026255" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY10990.1" /db_xref="Phytozome:POPTR_0019s02250.1" /db_xref="TAIR:AT2G14045.2" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PH87" /translation="MMRYKEEKEAKNETFRKYLESSGVLDALTKVLVALYEQNEKPSS ALEFVQQKLGGPTASEYEKLQTELSDLLAKYNELLGKHEETCKEVLAQKEFRLTDPCC TASTLKFIGSLCPALLNDIIPNFFTLSVSSSLNGSKKLVELKSLHSSPSAKETTDGEA LKDKDEV" gene 37357787..37360170 /locus_tag="TCM_026256" /note="dbxref CacaoGD:Thecc1EG026256" mRNA join(37357787..37358085,37358632..37360170) /locus_tag="TCM_026256" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400011565" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020392t1" /inference="similar to AA sequence:Phytozome:POPTR_0003s18000.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07172t00001" CDS join(37358032..37358085,37358632..37359933) /locus_tag="TCM_026256" /note="paralog of Thecc1EG020392t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10992.1" /db_xref="Phytozome:POPTR_0003s18000.1" /db_xref="TAIR:AT3G50150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B5TV78" /translation="MAVATNGKEPSLGEKPVEGMADEKDEICIPMAMLHRKFSRSPDA FIFRVPYQLRQVNERAYEPRVISIGPYHRGKAHLRAMEIHKWSYLKMLLQRRKEDSPV RYVEAMRNEEKAARSCYAETVYMSAQEFVEMLVLDGCFIIELIRKFACDELKDEHDDL FKRNFNLSIVGQELLLVENQLPFFVLDQLFKMTKTENEEEAFNHMALRFFSGIVPGPG IRVGNYRRSVRKKRKCILHLLGLVQANWLPSPEGIKRSEQPVTDRKWNFIRSAKELLD VGIKFKKASGENSLFDIKFEKGRFQIPTLTIYHDSERIFRNFIAYEQFNEGPTYVMDY TRFMDCLINYGDDVALLSHSGIIVNWLGSNEEVAHMFNKLNDFVYLSTSNFYYSELFN DVNKYCRGRWTLWKIKLRNKYFDTPWDWVLTSIIAGAILLLLTLVQTVFAVLSYFKQG N" gene complement(37360066..37364912) /locus_tag="TCM_026257" /note="dbxref CacaoGD:Thecc1EG026257" mRNA complement(join(37360066..37360450,37360545..37360736, 37361091..37361172,37361453..37361541,37361738..37361815, 37362365..37362422,37362756..37362985,37363330..37363474, 37363563..37363604,37364543..37364912)) /locus_tag="TCM_026257" /product="Peptidase C13 family" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036218001" /inference="similar to AA sequence:Phytozome:POPTR_0019s02260.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08780t00001" CDS complement(join(37360310..37360450,37360545..37360736, 37361091..37361172,37361453..37361541,37361738..37361815, 37362365..37362422,37362756..37362985,37363330..37363474, 37363563..37363604,37364543..37364694)) /locus_tag="TCM_026257" /codon_start=1 /product="Peptidase C13 family" /protein_id="EOY10993.1" /db_xref="Phytozome:POPTR_0019s02260.1" /db_xref="TAIR:AT1G08750.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HVI6" /translation="MATFINSKTIFRLLVLPCLLLYSSIAHNSSSVEATMHTNNWAVL VCTSRFWFNYRHMANTLSLYRTVKRLGIPDERIILMLADDMACNTRNKYPAQVFNNEN HRLNLYGDNVEVDYRGYEVTVENFLRVLTGRHETSVPRSKRLLSDEGSHILLYMTGHG GDEFLKFQDSEELQSHDLADAVKQMKEKLRFKELLIMVDTCQAATLFNQLQSPGVLAI GSSMRGENSYSHHLDSDVGVSVVDRFTYYTLAFFERLNIYDNASLSSLFSSYNPSMLM STAYCRRDLYQRRLEEVPVTNFFGSVMETIHTDAAYKALSRKDSGRFKAQMSLDQSVH HHERRTLINVNDQDEILNTKAEDQQGASTCPFTSFYEKLRKGENVDSLVNYGLVAMLP LLGVSSWLFQ" mobile_element complement(37362177..37362235) /note="source:CACAO_M_E56982_F143_scaffold_8 1738 1786" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(37365037..37365125) /note="source:scaffold_5_CACTA_0596 1764 1850" /mobile_element_type="transposon:TIR/CACTA" gene 37365066..37367576 /locus_tag="TCM_026258" /note="dbxref CacaoGD:Thecc1EG026258" mRNA join(37365066..37365079,37365725..37365787, 37365891..37367576) /locus_tag="TCM_026258" /product="F-box associated ubiquitination effector family protein, putative" /inference="alignment:exonerate-protein:2:frave:gene16602" /inference="similar to AA sequence:Phytozome:POPTR_0019s02270.2" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10534t2" CDS 37365906..37367138 /locus_tag="TCM_026258" /codon_start=1 /product="F-box associated ubiquitination effector family protein, putative" /protein_id="EOY10994.1" /db_xref="Phytozome:POPTR_0019s02270.2" /db_xref="TAIR:AT5G03970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9T4" /translation="MKSRRMSHDNFVHTALSCDDIMCNILLRLPPESISKLIIVSKRW LHLICSSSFHHSYLSRWKVGFNLLGFFVCNSLYLGRPQGGARRPHSEPALPLLSTSRE GDDIKFSGILKQLGYFIDSSNGLLLCGRHPKAYYVWDPVTKQQNKLPRPRVYFEELCM ALIVEDSPDNDICYRVIRAKCESRFDEINIVTIETFSSKTSTWSYSKLTCSSTISLSP WTSATVIGGVIHWYAAQGNVAIYDPDHEEKRIALVKLPGTYDFDEQVLGESSDGCLQY GWSCKAGLEIWVLEKDVGGYTSLFSSNKQSNVNWTKRYKLNFKIMWKKNPTVATKLIT RSKETEILSFLPQNSESVFIRSGSNIFLYHFKTERVEVVQYQGRGSSILWDFSKVVPY FKRAWPHSALCGIGNSRT" gene complement(37367783..37382235) /locus_tag="TCM_026259" /note="dbxref CacaoGD:Thecc1EG026259" mRNA complement(join(37367783..37368203,37368383..37368465, 37368579..37368659,37368761..37368817,37368931..37368987, 37369088..37369187,37369266..37369336,37369595..37369735, 37369863..37370069,37370159..37370314,37370409..37370663, 37370801..37370842,37370934..37371045,37371180..37371319, 37371759..37371980,37372267..37372365,37373159..37373278, 37373378..37373583,37373808..37373985,37374162..37374222, 37374427..37374536,37374657..37374788,37374926..37375096, 37375186..37375312,37375545..37375582,37375845..37375946, 37376031..37376088,37376211..37376312,37376444..37376590, 37376671..37376807,37376899..37377048,37377139..37377298, 37377616..37377674,37377801..37377957,37378054..37378199, 37378290..37378433,37378601..37379135,37381767..37382235)) /locus_tag="TCM_026259" /product="Myosin family protein with Dil domain" /inference="alignment:exonerate- protein:2:frave:gene16602.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029097t1" /inference="similar to AA sequence:ricco:29680.m001667" /note="quality class is strong, express is medium, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.39 coverage" CDS complement(join(37368080..37368203,37368383..37368465, 37368579..37368659,37368761..37368817,37368931..37368987, 37369088..37369187,37369266..37369336,37369595..37369735, 37369863..37370069,37370159..37370314,37370409..37370663, 37370801..37370842,37370934..37371045,37371180..37371319, 37371759..37371980,37372267..37372365,37373159..37373278, 37373378..37373583,37373808..37373985,37374162..37374222, 37374427..37374536,37374657..37374788,37374926..37375096, 37375186..37375312,37375545..37375582,37375845..37375946, 37376031..37376088,37376211..37376312,37376444..37376590, 37376671..37376807,37376899..37377048,37377139..37377298, 37377616..37377674,37377801..37377957,37378054..37378199, 37378290..37378433,37378601..37378783)) /locus_tag="TCM_026259" /note="dbxref ricco:29680.m001667; paralog of Thecc1EG029097t1" /codon_start=1 /product="Myosin family protein with Dil domain" /protein_id="EOY10995.1" /db_xref="TAIR:AT1G54560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7KIU9" /translation="MYFDGKIPLHNALISLLQGTPVNIIVGSHIWVEDADEAWIDGQV SKINGNNAEIETSDGKKVTANLSKIYPKDVEAPAGGVDDMTKLSYLHEPGVLQNLKIR YELNEIYTYTGNILIAINPFQRLPHIYDAHMMQQYKGAPFGELSPHVFAVADVAYRAM INEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRVATEGRTVEQQVLESNPVLEAF GNAKTVRNNNSSRFGKFVEIQFDKHGRISGAAIRTYLLERSRVCQISDPERNYHCFYL LCAAPQEEIERYKLGNPKTFHYLNQSRCYELVGVSDAHDYLATRRAMDIVGISEKEQE AIFRVVASILHLGNIDFAKGKEVDSSVPKNEQAKFHLKTTAELLMCDAKALEDALCKR VMITPEEVIKRSLDPQSAAVSRDGLAKTIYSRLFDWLVNKINKSIGQDPNSKSLIGVL DIYGFESFKANSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEQIDWSYIEFVDNQD VLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQTFKAHKRFIKPKLSRTDFTIAH YAGEVLYQSDQFLDKNKDYVVPEHQDLLNASKCSFVAGLFPPLPEETSKSSKFSSIGS RFKLQLQQLMETLNSTEPHYIRCVKPNNLLKPAVFENVNIMQQLRCGGVLEAIRISMA GYPTRKPFFEFTNRFGLLNPEALEGNYDEKAACKKILEKAGLKGFQIGKTKIFLRAGQ MAELDARRAEVLSNAAKTIQRRIRTHISRKRFLALRKAAIDLQSVCRGRLACKIYDNI RRQAAALKIQKNTRRYQAREAYKKLHISALILQTGLRTMAARKEFRFRKLNKAATLVQ ARWRCCRDATYYKKLKRGCIVTQTRWRGRVARKELRKLKMAARETGALKEAKDKLEKN VEELTWRLQLEKRLRTDLEEAKAQEIGKLQNSLQEMQKKIDETNALLVKEREEAKKAI AEAPPVIQEKEVLVEDTEKVESLTAEVESLKASLDSEKQRADDAEGKYNELQESSEER RKKLEETEKKVQQLQETLRGLEEKLTNLESENQVLRQQSVSMAPNKFLSGRSRSILQR GSESGHLEVRAPLDLHSPSINHRDLSEVEEKPQKSLNEKQQENQELLIRCIAQHLGFA GNRPIAACIIYKCLLQWRSFEVERTSVFDRIIQTIGHAIETQDNNDILAYWLSNASTL LLLLQRTLKASGAAGMTPQRRRSSSATLFGRMTQSFRGTPQGVNLSLINGGINSGVET LRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGS RSVANTVAQQALIAHWQGIVKSLGNFLNTLKANYVPPFLVRKVFTQIFSFINVQLFNS LLLRRECCSFSNGEYVKAGLAELEHWCYKATDEYAGSAWDELKHIRQAIGFLVIHQKP KKTLDEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSTDVIANMRVLMTEDSNNAVS NSFLLDDDSSIPFSVDDLSKSMEQIDIADIEPPPLIRENSGFSFLLPRSD" mobile_element complement(37381039..37381309) /note="source:CACAO_on_SSS_E94_scaffold_6 36 348" /mobile_element_type="transposon:TIR/Mutator" gene 37381493..37382865 /locus_tag="TCM_026260" /note="dbxref CacaoGD:Thecc1EG026260" mRNA join(37381493..37382590,37382737..37382865) /locus_tag="TCM_026260" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29680.m001665" /note="quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc985t14" CDS 37381618..37382115 /locus_tag="TCM_026260" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10996.1" /translation="MGKLRDHRCHESKNPTKAKKIPIKIKYISSPKMVNASNADEFRA IVQELTGRNSGVGEPSNVPTTLAEEANQVDSPPAKVYDKSLLDTFRDSDVGEPSNVPT TLPEEANHVHSPFQVDSPPAKVVDKNLLDTFQDDMSSLEFDEGFLWRGVPENLFGFQS PFIFV" gene complement(37382313..>37387563) /locus_tag="TCM_026261" /note="dbxref CacaoGD:Thecc1EG026261" mRNA complement(join(37382313..37383222,37383956..37384040, 37385263..37385339,37387315..37387563)) /locus_tag="TCM_026261" /product="SSXT family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s04090.1" /inference="similar to AA sequence:Phytozome:POPTR_0019s02320.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10660t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10660t3" mRNA complement(join(37382313..37383222,37383956..37384040, 37385263..37385342,37387315..>37387563)) /locus_tag="TCM_026261" /product="SSXT family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s04090.1" /inference="similar to AA sequence:Phytozome:POPTR_0019s02320.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is weak, protein is partial5; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10660t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10660t3; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1018t7" CDS complement(join(37382788..37383222,37383956..37384040, 37385263..37385342,37387315..>37387563)) /locus_tag="TCM_026261" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="SSXT family protein isoform 2" /protein_id="EOY10998.1" /db_xref="Phytozome:POPTR_0019s02320.1" /db_xref="TAIR:AT5G28640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L8A5" /translation="VILLFQLSVFWSEIVFFFFFFCIEREREREKIYTYKVFSFSFSV LFERVCVDIKKEMQQHLMQMQPMMAAYYPNNVTTDHIQQQYLDENKSLILKIVESQNS GKLSECAENQARLQRNLMYLAAIADSQPQPPNMHAQFPSSGIMQPGGHYMQHQQAQQM TPQSLMAARSSMLYAQQPFSALQQQQALHSQLGMSSGGNTGLHMLQSEASTAGGSGAL GAGGFPDFGRGSSGEGMHAGRAMAGGSKQDIGSSGSAEGRGGSSGGQGGDGGETLYLK AADDGN" CDS complement(join(37382788..37383222,37383956..37384040, 37385263..37385339,37387315..37387395)) /locus_tag="TCM_026261" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="SSXT family protein isoform 1" /protein_id="EOY10997.1" /db_xref="Phytozome:POPTR_0019s02320.1" /db_xref="TAIR:AT5G28640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L8A5" /translation="MQQHLMQMQPMMAAYYPNNVTTDHIQQYLDENKSLILKIVESQN SGKLSECAENQARLQRNLMYLAAIADSQPQPPNMHAQFPSSGIMQPGGHYMQHQQAQQ MTPQSLMAARSSMLYAQQPFSALQQQQALHSQLGMSSGGNTGLHMLQSEASTAGGSGA LGAGGFPDFGRGSSGEGMHAGRAMAGGSKQDIGSSGSAEGRGGSSGGQGGDGGETLYL KAADDGN" mobile_element complement(37387727..37387803) /note="source:CACAO_M_E23938_F233_scaffold_4 670 758" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 37387728..37387789 /note="source:CACAO_M_E23752_F369_scaffold_4 2085 2135" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(37387956..37388011) /note="source:CACAO_Mariner_E36_scaffold_2 1159 1211" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene 37389940..37391183 /locus_tag="TCM_026262" /note="dbxref CacaoGD:Thecc1EG026262" mRNA join(37389940..37389965,37390095..37390386, 37391132..37391183) /locus_tag="TCM_026262" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc865t1_C1" CDS join(37389950..37389965,37390095..37390240) /locus_tag="TCM_026262" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY10999.1" /translation="MKIMKDAGWCLLPVCPWLRTFICSSLLPRAFLLLHKSPSVSFSF FFGFAVVLS" mobile_element 37390545..37390857 /note="source:scaffold_5_CACTA_0614 3174 3496" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(37391266..37391675) /note="source:scaffold_4_CACTA_0511 13156 13549" /mobile_element_type="transposon:TIR/CACTA" mobile_element 37391669..37391715 /note="source:CACAO_on_E69_scaffold_9 984 1029" /mobile_element_type="transposon:TIR/hAT" mobile_element 37393826..37394269 /note="source:scaffold_9_CACTA_0946 17761 18225" /mobile_element_type="transposon:TIR/CACTA" gene complement(37395467..37396051) /locus_tag="TCM_026263" /note="dbxref CacaoGD:Thecc1EG026263" mRNA complement(37395467..37396051) /locus_tag="TCM_026263" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g30640.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2659t1" CDS complement(37395723..37396010) /locus_tag="TCM_026263" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11000.1" /translation="MASCRKVVKFTVTFIAAVVLLFGFDQHVLATRPLDEVPFEEGLI VQSLQRGPVPPSGGNPCTNIPGRSRGRCTLSEMNVAGGGGGMVAHPPPAFS" mobile_element 37397017..37397254 /note="source:CACAO_on_E35_A_scaffold_3 3764 4025" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(37397522..37398099) /note="source:CACAO_M_E4753_F17_scaffold_2 7256 7843" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(37397992..37398119) /note="source:scaffold_2_CACTA_0244 14343 14468" /mobile_element_type="transposon:TIR/CACTA" gene complement(37398559..37403943) /locus_tag="TCM_026264" /note="dbxref CacaoGD:Thecc1EG026264" mRNA complement(join(37398559..37399451,37399545..37399651, 37399730..37399824,37399919..37400036,37400115..37400212, 37400417..37400533,37400642..37400729,37400869..37401042, 37401146..37401293,37401450..37401523,37401728..37401783, 37402244..37402382,37402502..37402564,37402766..37402877, 37402962..37403180,37403438..37403943)) /locus_tag="TCM_026264" /product="Phosphoribosylaminoimidazole carboxylase atpase-subunit isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036258001" /inference="similar to AA sequence:ricco:29680.m001662" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10620t2" mobile_element complement(37398589..37398767) /note="source:INTACT135F_F90_scaffold_2-int 12870 13049" /mobile_element_type="retrotransposon:LTR/Copia" mRNA complement(join(37398879..37399451,37399545..37399651, 37399730..37399824,37399959..37400036,37400115..37400212, 37400417..37400533,37400642..37400729,37400869..37401042, 37401146..37401293,37401450..37401523,37401728..37401783, 37402244..37402382,37402502..37402564,37402766..37402877, 37402962..37403180,37403438..37403815)) /locus_tag="TCM_026264" /product="Phosphoribosylaminoimidazole carboxylase atpase-subunit isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036258001" /inference="similar to AA sequence:ricco:29680.m001662" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc467t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10620t2" mRNA complement(join(37398879..37399453,37399957..37400036, 37400115..37400212,37400417..37400533,37400642..37400729, 37400869..37401042,37401146..37401293,37401450..37401523, 37401728..37401783,37402244..37402382,37402502..37402564, 37402766..37402877,37402962..37403180,37403438..37403815)) /locus_tag="TCM_026264" /product="Phosphoribosylaminoimidazole carboxylase atpase-subunit isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036258001" /inference="similar to AA sequence:ricco:29680.m001662" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc386t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10620t2" mRNA complement(join(37398879..37399453,37399918..37400036, 37400115..37400212,37400417..37400533,37400642..37400729, 37400869..37401042,37401146..37401293,37401450..37401523, 37401728..37401783,37402244..37402382,37402502..37402564, 37402766..37402877,37402962..37403180,37403438..37403815)) /locus_tag="TCM_026264" /product="Phosphoribosylaminoimidazole carboxylase atpase-subunit isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036258001" /inference="similar to AA sequence:ricco:29680.m001662" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc386t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10620t2" CDS complement(join(37399358..37399451,37399545..37399651, 37399730..37399824,37399919..37400036,37400115..37400212, 37400417..37400533,37400642..37400729,37400869..37401042, 37401146..37401293,37401450..37401523,37401728..37401783, 37402244..37402382,37402502..37402564,37402766..37402877, 37402962..37403180,37403438..37403697)) /locus_tag="TCM_026264" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29680.m001662" /codon_start=1 /product="Phosphoribosylaminoimidazole carboxylase atpase-subunit isoform 1" /protein_id="EOY11001.1" /db_xref="TAIR:AT2G37690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9U5" /translation="MLQKSSNAVFSSSSESSSFFAFRPSHSLLPPPTPLSLRFFSMTA DDDHPHHRKLHLRHSSTSSFKLLNPVLACGASPDSHQTSSSLRNDDGSPVHGLSESIV GVLGGGQLGRMLCQAASKMAIKVMVLDPSENCPASALAYDHMVGSFDDSATVQEFAKR CGVLTVEIEHVDVATLERLEQQGVDCEPRASTIRIIQDKYLQKVHFSQHAIPLPEFME IDDLEGAKRAGDLFGYPLMIKSKRLAYDGRGNAVAKSEEELPSAVSALGGFGRGLYVE KWAPFVKELAVIVARGRDNSILCYPVVETIHKENICHIVKAPADVPWKIRKLANDVAY KAISSLEGAGVFAVELFLTKDGQILLNEVAPRPHNSGHHTIESCYTSQFEQHLRAVVG LPLGDPSMKTPAAIMYNLLGEDEGEPGFKMAHQLIARALEIPGATVHWYDKPEMRKQR KMGHITLVGPSMGVVEARLNSMLKEEVSENQNEVSPRVGIIMGSDSDLPVMKDAARIL DMFGVSCEVRIVSAHRTPELMFSYASSARERGIQVIIAGAGGAAHLPGMVAALTPLPV IGVPVRASTLDGIDSLLSIVQMPRGVPVATVAVNNATNAGLLAVRMLGVGDADLLARM SQYQEDTRDDVLTKAQRLQNNGWEAYLNH" mRNA complement(join(37399428..37399451,37399545..37399651, 37399730..37400036,37400115..37400212,37400417..37400533, 37400642..37400729,37400869..37401042,37401146..37401293, 37401450..37401523,37401728..37401783,37402244..37402382, 37402502..37402564,37402766..37402877,37402962..37403180, 37403438..37403815)) /locus_tag="TCM_026264" /product="Phosphoribosylaminoimidazole carboxylase atpase-subunit isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036258001" /inference="similar to AA sequence:ricco:29680.m001662" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc386t7; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10620t2" CDS complement(join(37399447..37399453,37399957..37400036, 37400115..37400212,37400417..37400533,37400642..37400729, 37400869..37401042,37401146..37401293,37401450..37401523, 37401728..37401783,37402244..37402382,37402502..37402564, 37402766..37402877,37402962..37403180,37403438..37403697)) /locus_tag="TCM_026264" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:29680.m001662" /codon_start=1 /product="Phosphoribosylaminoimidazole carboxylase atpase-subunit isoform 5" /protein_id="EOY11005.1" /db_xref="TAIR:AT2G37690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9U5" /translation="MLQKSSNAVFSSSSESSSFFAFRPSHSLLPPPTPLSLRFFSMTA DDDHPHHRKLHLRHSSTSSFKLLNPVLACGASPDSHQTSSSLRNDDGSPVHGLSESIV GVLGGGQLGRMLCQAASKMAIKVMVLDPSENCPASALAYDHMVGSFDDSATVQEFAKR CGVLTVEIEHVDVATLERLEQQGVDCEPRASTIRIIQDKYLQKVHFSQHAIPLPEFME IDDLEGAKRAGDLFGYPLMIKSKRLAYDGRGNAVAKSEEELPSAVSALGGFGRGLYVE KWAPFVKELAVIVARGRDNSILCYPVVETIHKENICHIVKAPADVPWKIRKLANDVAY KAISSLEGAGVFAVELFLTKDGQILLNEVAPRPHNSGHHTIESCYTSQFEQHLRAVVG LPLGDPSMKTPAAIMYNLLGEDEGEPGFKMAHQLIARALEIPGATVHWYDKPEMRKQR KMGHITLVGPSMGVVEARLNSMLKEEVSENQNEVSPRVGIIMGSDSDLPVMKDAARIL DMFGVSCEVRIVSAHRTPELMFSYASSARERGIQVE" CDS complement(join(37399447..37399453,37399918..37400036, 37400115..37400212,37400417..37400533,37400642..37400729, 37400869..37401042,37401146..37401293,37401450..37401523, 37401728..37401783,37402244..37402382,37402502..37402564, 37402766..37402877,37402962..37403180,37403438..37403697)) /locus_tag="TCM_026264" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29680.m001662" /codon_start=1 /product="Phosphoribosylaminoimidazole carboxylase atpase-subunit isoform 4" /protein_id="EOY11004.1" /db_xref="TAIR:AT2G37690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9U5" /translation="MLQKSSNAVFSSSSESSSFFAFRPSHSLLPPPTPLSLRFFSMTA DDDHPHHRKLHLRHSSTSSFKLLNPVLACGASPDSHQTSSSLRNDDGSPVHGLSESIV GVLGGGQLGRMLCQAASKMAIKVMVLDPSENCPASALAYDHMVGSFDDSATVQEFAKR CGVLTVEIEHVDVATLERLEQQGVDCEPRASTIRIIQDKYLQKVHFSQHAIPLPEFME IDDLEGAKRAGDLFGYPLMIKSKRLAYDGRGNAVAKSEEELPSAVSALGGFGRGLYVE KWAPFVKELAVIVARGRDNSILCYPVVETIHKENICHIVKAPADVPWKIRKLANDVAY KAISSLEGAGVFAVELFLTKDGQILLNEVAPRPHNSGHHTIESCYTSQFEQHLRAVVG LPLGDPSMKTPAAIMYNLLGEDEGEPGFKMAHQLIARALEIPGATVHWYDKPEMRKQR KMGHITLVGPSMGVVEARLNSMLKEEVSENQNEVSPRVGIIMGSDSDLPVMKDAARIL DMFGVSCEVRIVSAHRTPELMFSYASSARERGIQVIIAGAGGAAHLPGE" CDS complement(join(37399816..37399824,37399959..37400036, 37400115..37400212,37400417..37400533,37400642..37400729, 37400869..37401042,37401146..37401293,37401450..37401523, 37401728..37401783,37402244..37402382,37402502..37402564, 37402766..37402877,37402962..37403180,37403438..37403697)) /locus_tag="TCM_026264" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29680.m001662" /codon_start=1 /product="Phosphoribosylaminoimidazole carboxylase atpase-subunit isoform 2" /protein_id="EOY11002.1" /db_xref="TAIR:AT2G37690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9U5" /translation="MLQKSSNAVFSSSSESSSFFAFRPSHSLLPPPTPLSLRFFSMTA DDDHPHHRKLHLRHSSTSSFKLLNPVLACGASPDSHQTSSSLRNDDGSPVHGLSESIV GVLGGGQLGRMLCQAASKMAIKVMVLDPSENCPASALAYDHMVGSFDDSATVQEFAKR CGVLTVEIEHVDVATLERLEQQGVDCEPRASTIRIIQDKYLQKVHFSQHAIPLPEFME IDDLEGAKRAGDLFGYPLMIKSKRLAYDGRGNAVAKSEEELPSAVSALGGFGRGLYVE KWAPFVKELAVIVARGRDNSILCYPVVETIHKENICHIVKAPADVPWKIRKLANDVAY KAISSLEGAGVFAVELFLTKDGQILLNEVAPRPHNSGHHTIESCYTSQFEQHLRAVVG LPLGDPSMKTPAAIMYNLLGEDEGEPGFKMAHQLIARALEIPGATVHWYDKPEMRKQR KMGHITLVGPSMGVVEARLNSMLKEEVSENQNEVSPRVGIIMGSDSDLPVMKDAARIL DMFGVSCEVRIVSAHRTPELMFSYASSARERGIQVW" CDS complement(join(37399914..37400036,37400115..37400212, 37400417..37400533,37400642..37400729,37400869..37401042, 37401146..37401293,37401450..37401523,37401728..37401783, 37402244..37402382,37402502..37402564,37402766..37402877, 37402962..37403180,37403438..37403697)) /locus_tag="TCM_026264" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29680.m001662" /codon_start=1 /product="Phosphoribosylaminoimidazole carboxylase atpase-subunit isoform 3" /protein_id="EOY11003.1" /db_xref="TAIR:AT2G37690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N9U5" /translation="MLQKSSNAVFSSSSESSSFFAFRPSHSLLPPPTPLSLRFFSMTA DDDHPHHRKLHLRHSSTSSFKLLNPVLACGASPDSHQTSSSLRNDDGSPVHGLSESIV GVLGGGQLGRMLCQAASKMAIKVMVLDPSENCPASALAYDHMVGSFDDSATVQEFAKR CGVLTVEIEHVDVATLERLEQQGVDCEPRASTIRIIQDKYLQKVHFSQHAIPLPEFME IDDLEGAKRAGDLFGYPLMIKSKRLAYDGRGNAVAKSEEELPSAVSALGGFGRGLYVE KWAPFVKELAVIVARGRDNSILCYPVVETIHKENICHIVKAPADVPWKIRKLANDVAY KAISSLEGAGVFAVELFLTKDGQILLNEVAPRPHNSGHHTIESCYTSQFEQHLRAVVG LPLGDPSMKTPAAIMYNLLGEDEGEPGFKMAHQLIARALEIPGATVHWYDKPEMRKQR KMGHITLVGPSMGVVEARLNSMLKEEVSENQNEVSPRVGIIMGSDSDLPVMKDAARIL DMFGVSCEVRIVSAHRTPELMFSYASSARERGIQVIIAGAGGAAHLPG" mobile_element complement(37402581..37402625) /note="source:scaffold_1_CACTA_0029 1787 1831" /mobile_element_type="transposon:TIR/CACTA" mobile_element 37403806..37404171 /note="source:CACAO_M_E44982_F19_scaffold_6 118 521" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(37404323..37410345) /locus_tag="TCM_026265" /note="dbxref CacaoGD:Thecc1EG026265" mRNA complement(join(37404323..37404361,37404786..37405376, 37405645..37406720,37407255..37409053,37410130..37410345)) /locus_tag="TCM_026265" /product="Intracellular protein transport protein USO1, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g40900.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s04060.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1711t1" CDS complement(join(37405696..37406720,37407255..37408770)) /locus_tag="TCM_026265" /codon_start=1 /product="Intracellular protein transport protein USO1, putative" /protein_id="EOY11006.1" /db_xref="Phytozome:POPTR_0013s04060.1" /db_xref="TAIR:AT1G08800.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5L1" /translation="MVAVLKLALDYCYIVGGLEFALFQAIGILFQNYVIFWGMASGGI SSVNSQKISHRFTRALSSAFLEWLLIFMLFIDAIVSYLITKFAHKCKLQTPCLLCSRL DHVLGKEKQKFYWDLVCGDHKLEISSLVYCHSHNKLVDVHGMCESCLFSFATINKSNA ETYRLLVGKLGEDSDCGLVEDPSLEDHKHGHSTMRHCSCCNEPWMPKGYVKTLIQTQS TVSQAAEFDLPLPVAVEHGKDEQNRSDNALISDRATQQRKSRADPLSHVAYSELKITS DSESELSSDAGDEEDALILETDHVKSDIADQHMQPESCTITVSEDFASEKLIDPVSET KPSIFISQSQQDIIEPHGIKSVESTDSSGRDLEELNWKQASSKTKPSAFAELISLDDV PLSPNGGEAYIDVSTKMNLNSLDKVPPSSDAGEIPIQGLEDGKLISLDHVSSLSFGNE TPVEVSKESKPISIDDVSRSNVVAPSVEGLKESSGEVDVSPSNVVAPSVEESKESSVM RTLEVEKKSVTECEEICKSREQPFPVPESPVETNHVASDTSVQVPNSLDLSDAYKLAV GSRGRQLSGKFEQWIGKDSSRLSEDLKVLLSQLSATRGIEQSINDVSPRISVSPRISI NSDELKASDSSTLNGMQILQKRISLERNESGLSIDGSIVSEIEGESLVDRLKRQVEHD RKLLNALYKELEEERNASTIAVNQAMAMITRLQEEKATLHMEALQSLRMMEEQAEYDM EALQKTNDLLAEKDKEIQYIEAELEFYRMKFPNESMLEDIVKSGYDLKARQVTVDHSE ANGIEEMVGVPTEPVIEKPNVCCAVEETDLSFRDTNKGTMKNPLSGDE" gene complement(37411360..37415576) /locus_tag="TCM_026266" /note="dbxref CacaoGD:Thecc1EG026266" mRNA complement(join(37411360..37414080,37415106..37415576)) /locus_tag="TCM_026266" /product="Mutator-like transposase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s04050.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004169t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s04050.1" /note="transcript variant 1; alternatively spliced; quality class is strong-expresste, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10626t2" mRNA complement(join(37411360..37414080,37414321..37414459, 37415106..37415576)) /locus_tag="TCM_026266" /product="Mutator-like transposase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s04050.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004169t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s04050.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:PASA:2:TSA:puevd3b025407t1a2; alternateUTRof:Thecc1EG026266t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10626t2" CDS complement(37411748..37413967) /locus_tag="TCM_026266" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG004169t1" /codon_start=1 /product="Mutator-like transposase isoform 1" /protein_id="EOY11007.1" /db_xref="Phytozome:POPTR_0013s04050.1" /db_xref="TAIR:AT1G64260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SR14" /translation="MANHDLILGQSHNLALGQNQPLVLGHNHNLGLTQNHDLELGQGH ERHLGLGQAHDHDLGLGHSHDHELDLGQSHDQEGNVDHTYGHSNELATDRKPDQSDHQ LALSENNELAVSENQELDDNLELAVDDNQEMGIDPARDLQQSQILVCLPHVLQARNVN PNFEVAVGQEFPDVKSCRRALRDTAIALHFEMQTIKSDKTRFTARCASEGCPWRIHAA KLPGVPTFTIRTIHETHTCGGIAHLGHQQASVQWVANSVEQRLRENPNYKPKEILEEI HRVHGITLSYKQAWRGKERIMAAMRGSFEEGYRLLPQYCEQVKRTNPGSIASVYGNPT DNCFQRLFISFQASIYGFLNACRPLLGLDRTFLKSKYLGTLLLATGFDGDGALFPLAF GVVDEENDDNWMWFLSELHNLLEINTENMPRLTILSDRQKGIVDGVEANFPTAFHGFC MRHLSESFRKEFNNTMLVNLLWEAAHALTVIEFEAKILEIEEISQDAAYWIRRIPPRL WATAYFEGTRFGHLTANIVESLNSWILEASGLPIIQMMECIRRQLMTWFNERRETSMQ WTSILVPSAERRVAEALERARTYQVLRANEAEFEVISHEGTNIVDIRNRCCLCRGWQL YGLPCAHAVAALLSCRQNVHRFTESCFTVATYRKTYSQTIHPIPDKSLWKELSEGDPN ASKAVEIVIHPPKSLKPPGRPRKKRVRAEDRGRVKRVVHCSRCNQTGHFRTTCAAPI" CDS complement(37411748..37413967) /locus_tag="TCM_026266" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG004169t1" /codon_start=1 /product="Mutator-like transposase isoform 1" /protein_id="EOY11008.1" /db_xref="Phytozome:POPTR_0013s04050.1" /db_xref="TAIR:AT1G64260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SR14" /translation="MANHDLILGQSHNLALGQNQPLVLGHNHNLGLTQNHDLELGQGH ERHLGLGQAHDHDLGLGHSHDHELDLGQSHDQEGNVDHTYGHSNELATDRKPDQSDHQ LALSENNELAVSENQELDDNLELAVDDNQEMGIDPARDLQQSQILVCLPHVLQARNVN PNFEVAVGQEFPDVKSCRRALRDTAIALHFEMQTIKSDKTRFTARCASEGCPWRIHAA KLPGVPTFTIRTIHETHTCGGIAHLGHQQASVQWVANSVEQRLRENPNYKPKEILEEI HRVHGITLSYKQAWRGKERIMAAMRGSFEEGYRLLPQYCEQVKRTNPGSIASVYGNPT DNCFQRLFISFQASIYGFLNACRPLLGLDRTFLKSKYLGTLLLATGFDGDGALFPLAF GVVDEENDDNWMWFLSELHNLLEINTENMPRLTILSDRQKGIVDGVEANFPTAFHGFC MRHLSESFRKEFNNTMLVNLLWEAAHALTVIEFEAKILEIEEISQDAAYWIRRIPPRL WATAYFEGTRFGHLTANIVESLNSWILEASGLPIIQMMECIRRQLMTWFNERRETSMQ WTSILVPSAERRVAEALERARTYQVLRANEAEFEVISHEGTNIVDIRNRCCLCRGWQL YGLPCAHAVAALLSCRQNVHRFTESCFTVATYRKTYSQTIHPIPDKSLWKELSEGDPN ASKAVEIVIHPPKSLKPPGRPRKKRVRAEDRGRVKRVVHCSRCNQTGHFRTTCAAPI" gene complement(37415772..37416753) /locus_tag="TCM_026267" /note="dbxref CacaoGD:Thecc1EG026267" mRNA complement(37415772..37416753) /locus_tag="TCM_026267" /product="60S ribosomal protein L10A" /inference="alignment:exonerate- protein:2:Phytozome:Sb03g040550.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041412t1" /inference="similar to AA sequence:Phytozome:Glyma19g37980.2" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1464t9" CDS complement(37416253..37416750) /locus_tag="TCM_026267" /note="paralog of Thecc1EG041412t1" /codon_start=1 /product="60S ribosomal protein L10A" /protein_id="EOY11009.1" /db_xref="Phytozome:Glyma19g37980.2" /db_xref="TAIR:AT2G27530.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LR24" /translation="MYRKTRLGFFSSLVNIIVLFVEISEMSKLQSDALREAISTIGAQ SKEKTRKFTKTIELQIGLKNYDPQKDKRFSGSVKLPYIPRPKMKICMLGDAQHVEDTE KIGLDYMDVEALKKLNNNKKLVREVYIRPFCHLKLSSSRPLVPWVLASTKQGNSQPLL LTRNP" gene complement(37417367..37420451) /locus_tag="TCM_026269" /note="dbxref CacaoGD:Thecc1EG026269" mRNA complement(join(37417367..37418122,37418376..37418941, 37419039..37419197,37419654..37420451)) /locus_tag="TCM_026269" /product="Ankyrin repeat family protein, putative" /inference="alignment:exonerate- protein:2:ricco:29929.m004576" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026270t1" /inference="similar to AA sequence:ricco:29929.m004575" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc5909t2" mobile_element complement(37417468..37417506) /note="source:CACAO_M_E34420_F305_scaffold_5 1482 1523" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(37417892..37418122,37418376..37418941, 37419039..37419197,37419654..37420287)) /locus_tag="TCM_026269" /note="dbxref ricco:29929.m004575; paralog of Thecc1EG026270t1" /codon_start=1 /product="Ankyrin repeat family protein, putative" /protein_id="EOY11010.1" /db_xref="TAIR:AT4G03460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TXC9" /translation="MQTATLPKLIEMDSKLYKAVMSGDRTSFSELIELDPSILLKVTT QEDTVLHVAAKFNQKKMAEEILKTQPSLVHQRNSKGNTALHVAARLGSEEMVKFFIDF SNISSASRGVEGGAEVEEKLLLRMVNLEKETALHEAVKNDRYRVVNMLIKEDPGLTGF TNDAGESPLFLAVDRKLKYIAKLILQVDECSFDGRNNMNALHAAVVRSKSEVRKLFPY LAMLLMEHPPKAIADLKAYADLNCFRNIFNIPYILINWVLPTRISKAFIKALLKKHPS AIEKCDDYGWTPLHYAAFLGKSNILNLFLTYESDDENKAVSVDSVARIRDREGMTILH VAAKAGRVKALKILAKLCPDIWDMQDNKGRTALHLAADNGEVRAVKFILIKTRKLSNG LVNEQDYEGNTPMHLAAIQGFQSIFELFKRDKRVDKAICNKKGLGILDMIRLHEDLTI NEKCWMGLSAARKGSLSSLECTIHRKEQDISVFTTRKSKHPQKPLHFASEAHGEGEEE NEDEAVGVVEEIENVIGNLFK" mobile_element 37419267..37419332 /note="source:scaffold_10_CACTA_0127 7411 7476" /mobile_element_type="transposon:TIR/CACTA" gene complement(37421457..37427493) /locus_tag="TCM_026270" /note="dbxref CacaoGD:Thecc1EG026270" mRNA complement(join(37421457..37422148,37423180..37423222, 37423755..37424355,37424604..37425136,37425272..37425415, 37426683..37427493)) /locus_tag="TCM_026270" /product="Ankyrin repeat family protein, putative" /inference="alignment:exonerate- protein:2:ricco:29929.m004576.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026272t1" /inference="similar to AA sequence:ricco:29929.m004576" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.12 coverage" mobile_element 37422172..37422272 /note="source:scaffold_3_CACTA_0377 2121 2181" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(37423221..37423222,37423755..37424355, 37424604..37425136,37425272..37425415,37426683..37427271)) /locus_tag="TCM_026270" /note="dbxref ricco:29929.m004576; paralog of Thecc1EG026272t1" /codon_start=1 /product="Ankyrin repeat family protein, putative" /protein_id="EOY11011.1" /db_xref="TAIR:AT4G03500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RM72" /translation="MDPKLYKVVITTNIASLQELASSDLTVFLQVTAQEDNILHVAAK YNLEQVAEEIMKYPQLVLLVCQKNSKGDTALHIAARLGSLRTAKVLINCANNMSREIE ADVSLIRMVNMEQDTALHDAARNGHYQIMELLIKEAPDLALLTNNVGESPLFIVVDKK HVDVAKLILEVAPDCSFGGRNNMNVLHAAVVRSQDEVVRLSSYLVTLQSPMNYITNMS FKHYAKFSSFGPSTIFQAAIAKSKYKDFIEFLTGKCQSALSETDEYGWTPLHYAVHFG AVDIFQLFLIDSSTAYITDNEGMSVIHIAAREGEVVILEMLAYRFPEIWDLQDNNGQT ALHLAVAKGKLDSVKFILDFVLSHDGLINQQDNEGNTALHLATIQRHNHKIFELLMKD SRVDKTATNMEGLTVIDILLLNKEFGYYEKTWITLSVAKNGGLESLEQTINKNGRKVK SIEARKLEQPQQSEGRDPARDRQVEGQRQVANRKPGPAGIRKPTYDQLRHISSINLLV TTLIATVSFAAGFTMPGGYKSDGPDEGMAILSRKTAFRVFVIANALAFCFSTTSMFVH YCKSFVEKLDAVAFYTYITASLTSYGITAMVIAFVSGTYAALADSSGLAKAVLSIG" gene complement(37429743..37433085) /locus_tag="TCM_026271" /note="dbxref CacaoGD:Thecc1EG026271" mRNA complement(join(37429743..37430753,37430917..37431431, 37431923..37433085)) /locus_tag="TCM_026271" /product="Ankyrin repeat family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036241001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026274t1" /inference="similar to AA sequence:frave:gene05597" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10565t1" CDS complement(join(37430055..37430753,37430917..37431431, 37431923..37432514)) /locus_tag="TCM_026271" /note="dbxref frave:gene05597; paralog of Thecc1EG026274t1" /codon_start=1 /product="Ankyrin repeat family protein" /protein_id="EOY11012.1" /db_xref="TAIR:AT1G03670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HVK0" /translation="MDPELYEAAASGNLNFLKRMDPNLHVFQVTKQQQNTVLHIAVKF KQVESCQQILNSSSSLLLKCNSKGESPLHVAAKIGCLEIAELLVDCAKQLQRDVESSG VSALRKQLRMVNLEEDTALHVAVRNGHFAVAKCLMEADQGLLGLVNAANASPLCLAIG GGFARIASLILGTFPKSLNGDINMKTALRSAVFHSQHDIVKILLENVPNSRNETDQIG WSPLHYAALFGDLKSTQLLLQGNSSTAYIVDQDGTSALHVAAFRGHTNVVELIVQCCP DVHEVTDKKGRTVLHVAVISGQEKMVRRILEMPRLQGIINEKDNEGNTALHLAVIYKR DNIITILARNRGMERAAVNNNLLTAYDIFSLQPRKLSLLTAKTHYWLRGTHGLPALQK WVNTNLKREMIGETEEKDTNILFARGKHDDTSISNTTNEASDETVKRSRLEIHLLIAM LIATVTFQAAFMVPGGYNEDGPDKGTAQSIQKAPFKAFLIFNTIAFIFSIATVYIQFA TSKFSYYLRSRYASLAEVMIFIAVLGMLLAFASGMYVELANSNGLRLMGYIVVGCFLL VYYACWFLDPISMQIPGLQQPRKYLRDLLFRYGII" gene complement(37433744..37436349) /locus_tag="TCM_026272" /note="dbxref CacaoGD:Thecc1EG026272" mRNA complement(join(37433744..37434022,37434743..37435052, 37435123..37435251,37435341..37435493,37435742..37436349)) /locus_tag="TCM_026272" /product="Ankyrin repeat family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400048060" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026270t1" /inference="similar to AA sequence:Phytozome:GSVIVT01036248001" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00709t00001" CDS complement(join(37434852..37435052,37435123..37435251, 37435341..37435493,37435742..37436257)) /locus_tag="TCM_026272" /note="paralog of Thecc1EG026270t1" /codon_start=1 /product="Ankyrin repeat family protein, putative" /protein_id="EOY11013.1" /db_xref="Phytozome:GSVIVT01036248001" /db_xref="TAIR:AT4G03500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BTQ8" /translation="MGKCHSTLSEIDEYGWTPLHYAVHFGAVDIFQLFLIDSSTAYIR DNEGMSVIHIAAREGEVVILEMLAYRFPEIWDLQDNNGQTALHLAVARGKLDSVKFIL DFVLSHDGLINQQDNEGNTALHLKTIQRHDHKIFELLMKDSRVDKTATNMEGLTVIDI LLLNKEFGYYEKTWITLSVAKNGGLESLEQTINKNSRKVKSIEARILEQPQQSEGKDS ARDRRHNLLVTTLIATVSFAAGFTMPGGHKSDGPDEGTAMLSRKTAFRSFVEKLDAVA FYTYITASLTSYGITAMVIAFVSGTYAALADSFGLAKAVLSIGCSFFGLQLLVYLK" mobile_element 37437382..37445980 /note="source:INTACT174_F38_scaffold_5-int 1 8599" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(37441431..37452615) /locus_tag="TCM_026274" /note="dbxref CacaoGD:Thecc1EG026274" mRNA complement(join(37441431..37441476,37448846..37449779, 37449943..37450457,37450956..37451598,37452186..37452615)) /locus_tag="TCM_026274" /product="Ankyrin repeat family protein" /inference="alignment:exonerate- protein:2:Phytozome:Sb01g008900.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026271t1" /inference="similar to AA sequence:frave:gene05597" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc2796t2" CDS complement(join(37449084..37449779,37449943..37450457, 37450956..37451598,37452186..37452269)) /locus_tag="TCM_026274" /note="dbxref frave:gene05597; paralog of Thecc1EG026271t1" /codon_start=1 /product="Ankyrin repeat family protein" /protein_id="EOY11014.1" /db_xref="TAIR:AT1G03670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HVK0" /translation="MNLESGSLSAACLSWKLFDWDGLAIITMGPCKLPILCKKKSIAW AMDPELYEAAASGNLNFLKRMDPNLHVFQVTKQQQNTVLHIAVKFKQVEFCQHILISS SSLLLKCNSKGESPLHVAAKIGCLEIAELLVDCAKQLQRDVESSGVSALRKPLRMVNL EKDTALHAAVRNGHFAVAKCLMEADQGLLGLVNAANASPLCLAIEGGFSRIASLILET FPKSLNGDINMKTALRSAVFHSQHDIVKILLKNVPNSRNETDQIGWSPLHYAALYGDL KSTQLLLQGNSSTAYIVDQDGTSALHVAAFRGHTNVVELIVQCCPDVHEVTDKKGRTV LHVAVISGQEKMVRHILEMPRLCGIINEKDNEGNTALHLAVIYKRDNIVTILARNRGM ERAAVNNNLLTAYDIFSLQPRKLSLLTAKIHYWLRGTHGLPALQKWVNTNLKREMIGE TGEDTNILFARGKHDETSISNTTNEASDETVKRSRLEIHLLIATLIATVTFQAAFTVP GGYKEDGPDKGMAQSIQKAPFKAFLIFNTIAFIFSIATVYIQFATSKFSYYLRSRYAS LAEVMIFIAVLGMLLAFASGVYVELANSNGLRLMGYILVGCFLLVYYACWFLDPISMQ IPGLQQPRKYLRDLLFRYGII" mobile_element complement(37457680..37460629) /note="source:CACAO_M_E43479_F273_scaffold_5 1 2976" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 37463605..37474254 /locus_tag="TCM_026278" /note="dbxref CacaoGD:Thecc1EG026278" mRNA join(37463605..37464070,37473597..37474254) /locus_tag="TCM_026278" /product="Gb:AAF32477.1, putative isoform 1" /inference="alignment:exonerate- protein:2:frave:gene12620.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045312t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400000499" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14920t1" CDS join(37463944..37464070,37473597..37474063) /locus_tag="TCM_026278" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG045312t1" /codon_start=1 /product="Gb:AAF32477.1, putative isoform 1" /protein_id="EOY11015.1" /db_xref="Phytozome:PGSC0003DMP400000499" /db_xref="TAIR:AT5G16360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FFE7" /translation="MEKIKEKIEKGKRLFTHRIDSCRFKPGDHIYGYRGFGSYSHHGI YVGEDCAIHFIPTEGDGLSKQDPPCPKCGYQHNVHLGVVKTCLDCFLSNGALSSDSLC LYQYEESELVKMLKRSGSCSSSKCLPPQTVVNIANELHKENCFGRYDLVGNNCEDFST FCKTGIRRSEQVLSVMNLPMMPFLAKVLESLKLSLPK" gene 37464283..37464880 /locus_tag="TCM_026280" /note="dbxref CacaoGD:Thecc1EG026280" mRNA 37464283..37464880 /locus_tag="TCM_026280" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene12620" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026278t2" /note="quality class is strong-utrpoor, express is strong, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1086t5" CDS 37464376..37464540 /locus_tag="TCM_026280" /note="paralog of Thecc1EG026278t2" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11017.1" /translation="MLKRSGSCSSSKCLPPQTVVNIANELHKENCFGRYDLVGNNCED FSTFCKTGIR" mobile_element complement(37465175..37466923) /note="source:INTACT242_F12_scaffold_1-int 2816 4548" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 37465460..37466907 /note="source:INTACT745_F320_scaffold_4-int 6586 8024" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(37467131..37470077) /note="source:CACAO_M_E43479_F273_scaffold_5 1 2976" /mobile_element_type="retrotransposon:LTR/Gypsy" mRNA join(37473264..37473503,37473597..37474254) /locus_tag="TCM_026278" /product="Gb:AAF32477.1, putative isoform 1" /inference="alignment:exonerate- protein:2:frave:gene12620.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045312t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400000499" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:PASA:2:TSA:puevd3b025423t1a4; alternateUTRof:Thecc1EG026278t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14920t1" CDS join(37473377..37473503,37473597..37474063) /locus_tag="TCM_026278" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG045312t1" /codon_start=1 /product="Gb:AAF32477.1, putative isoform 1" /protein_id="EOY11016.1" /db_xref="Phytozome:PGSC0003DMP400000499" /db_xref="TAIR:AT5G16360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FFE7" /translation="MEKIKEKIEKGKRLFTHRIDSCRFKPGDHIYGYRGFGSYSHHGI YVGEDCAIHFIPTEGDGLSKQDPPCPKCGYQHNVHLGVVKTCLDCFLSNGALSSDSLC LYQYEESELVKMLKRSGSCSSSKCLPPQTVVNIANELHKENCFGRYDLVGNNCEDFST FCKTGIRRSEQVLSVMNLPMMPFLAKVLESLKLSLPK" mobile_element 37474897..37476350 /note="source:INTACT745_F320_scaffold_4-int 6586 8024" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(37476413..37476942) /note="source:CACAO_M_E35674_F13_scaffold_5 6927 7463" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(37476938..37476997) /note="source:CACAO_M_E35674_F13_scaffold_5 4471 4532" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 37477174..37477412 /note="source:CACAO_M_E48452_F5_scaffold_6 9753 9958" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(37477676..37477979) /note="source:CACAO_M_E35674_F13_scaffold_5 3114 3417" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 37480906..37485374 /locus_tag="TCM_026283" /note="dbxref CacaoGD:Thecc1EG026283" mRNA join(37480906..37481496,37481790..37484402, 37484577..37484978,37485141..37485374) /locus_tag="TCM_026283" /product="Serine-threonine protein kinase, plant-type, putative" /inference="alignment:exonerate- protein:2:ricco:27732.m000285.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG047097t1" /inference="similar to AA sequence:ricco:27732.m000285" /note="quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.26 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc4039t1" CDS join(37481409..37481496,37481790..37484402, 37484577..37484978,37485141..37485157) /locus_tag="TCM_026283" /note="dbxref ricco:27732.m000285; paralog of Thecc1EG047097t1" /codon_start=1 /product="Serine-threonine protein kinase, plant-type, putative" /protein_id="EOY11018.1" /db_xref="TAIR:AT3G47570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SS82" /translation="MTNSRQLLLHQTKLNGFHGRIFAGNMTKSTTLVVTGNETDQRAL LEFKRKIIEDNFGFMHSWNNTVHFCQWYGVKCSRRHERVTMLDLGSLKLVGSISPSIG NLSFLRVLNLRNNSFNQAIPQEIGRLRRLRELMLQNNHLRGAIPSNLSSCTRLAAINF SSNLLTGEIPGALGLLSNLIRFSLGENDLRGGIPPSLGNLSSLQYIYLHSNRLSGVMP EALGRLKNLVALAVRENEISGVIPASIFNLSNIKRLYIATNQIQGRLPPDLGITMPQI EILAVEDNQFIGSFPDSISNASNLVHLTAGENKLSGPLPSFEKLDKLSRFIIMGNLLG SMTATDLNFLCTLNNASRLELLEIGENNFGGELPDCIGNLSRNLKVLNIQRCRIWGRI PSGIANLINLEVLAASYNQLSGSIPLGIGRLQKLSIVFAAGNSLSGAIPPNFGNLTML TKLGLSDNNLQGNIPSSIGKCEILVGLSLAKNNLSGSIPPEVIGLSSLSIVLNLSSNS LTGVLPVEVENMKNLGELSVSQNRLSGVLPDSLGSCVRLERLLLDGNFFEGPIPSSLS SLRGLEALDISDNNLSGEIPKFLVSLESLQYLNLSFNDFEGMVPIEGVFKNASATFVE GNNKLCGGTLELHLPSCNLKTSNRRWNNSLKLKIVVVFAVLGVILVSTFLLILWFRPK KEKSTATTFAENSLLNLSYQSLLKATEGFSSMNLVGSGSFGSVYKGILEDSGVVVAVK VLNLICRGASRSFMAECEVLKNIRHRNLVKVLTAVSGIDYQGNDFKALIYEFMQNGSL EDWLHPSVGMNEANEVARNLNLLQRLNVAIDVGCALEYLHHYCETPIVHCDLKPSNIL LDDEMVSHVGDFGLAKFIISDMQNNTSSLSSSLGLRGTFGYAPPEYGLGSVVTSYGDV YSYGILLLEMFTGKKPTDEMFKENLNLHNFVRTALPDQVAEITDPILLQESFRGERMT SNTRNQSNQRDNRLLQCLNSILEIGVACSIDLPTERMDMTHVVAELCSIRDKLLPTRS LRSTAAGTR" mobile_element complement(37486909..37487053) /note="source:CACAO_Mariner_E220_scaffold_9 8992 9137" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene complement(37488148..37506225) /locus_tag="TCM_026284" /note="dbxref CacaoGD:Thecc1EG026284" mRNA complement(join(37488148..37488298,37491617..37492602, 37506195..37506225)) /locus_tag="TCM_026284" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene31206" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026294t1" /inference="similar to AA sequence:frave:gene31206" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.25 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc4301t1" CDS complement(37492103..37492591) /locus_tag="TCM_026284" /note="dbxref frave:gene31206; paralog of Thecc1EG026294t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11019.1" /translation="MKHISSFLRQRDHLSAGIYVGDDMVIHLMGPSKIYNKPPCKKCG FKPQAGIFKTCLDCFLEGHSLYRYEYDVSYLKLVFKRRGSCSTWDCKPADEVVETAHR LLQSNRFGNYNFFLNNCEDFAVYCKTGVAMSNQTAGLFGFNLLGVVGYAAAKGVYEAV AD" mobile_element complement(37492629..37492673) /note="source:CACAO_M_S_E90022_F9_scaffold_8 3115 3159" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 37492633..37492706 /note="source:scaffold_5_CACTA_0596 7021 7095" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(37501183..37501251) /note="source:scaffold_5_CACTA_0596 7005 7073" /mobile_element_type="transposon:TIR/CACTA" mobile_element 37501198..37501208 /note="source:scaffold_5_CACTA_0596 7005 7022" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(37501209..37501266) /note="source:CACAO_M_S_E90022_F9_scaffold_8 3099 3156" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 37501267..37501307 /note="source:scaffold_5_CACTA_0596 7023 7097" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(37502887..37507358) /note="source:CACAO_M_S_E32835_F9_scaffold_4 1 4490" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(37507520..37507734) /note="source:scaffold_4_CACTA_0482 5699 5898" /mobile_element_type="transposon:TIR/CACTA" mobile_element 37507543..37508339 /note="source:scaffold_2_CACTA_0277 4040 4832" /mobile_element_type="transposon:TIR/CACTA" gene complement(37510152..37518593) /locus_tag="TCM_026286" /note="dbxref CacaoGD:Thecc1EG026286" mRNA complement(join(37510152..37510488,37511003..37511171, 37511312..37511392,37511484..37511633,37511881..37512024, 37512131..37512295,37512442..37512586,37514314..37514504, 37514611..37514734,37517272..37517408,37517590..37517820, 37518096..37518211,37518458..37518593)) /locus_tag="TCM_026286" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS complement(join(37510401..37510488,37511003..37511171, 37511312..37511392,37511484..37511633,37511881..37512024, 37512131..37512295,37512442..37512586,37514314..37514504, 37514611..37514734,37517272..37517408,37517590..37517820, 37518096..37518211,37518458..37518531)) /locus_tag="TCM_026286" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11020.1" /translation="MVLYKVGGVTPDYVTIKDWFLRHFRHSKRLSMAYSTVASQELPP KATPFPLLLRNPDSTLCKESIIGRCINDVFMKVKCLVLYRKSQHNPTPIDGYFLPTGN ALPFLHHDKHSGYIELSQIYNFTTHFDDLSPQTTNPVEGGRTATGNALFNEARLDQSK GRGFPHASDSASSNPFNITVHNIHRKVSRQERNGSALRWGGHQSIDGRRVTVKKVERW RGSLVEGCKVASQQEKRVAKHNELPSRKETPHGVRLRNEKLVTERGELKGCKHVFVIT TISDEELEWTKHNAVTLLPIDIAGVDREVRLWVKLKEIPGKLWHINTFKAMAECWGEF LGMDKNLEVYTTGKKILEMEAVQPSGPDILKELSGSDKEVEAEPSFRPCASTGVNGSR NKGSADKDKRLQNGNKRGDKREETFVLCKHNSERSRGGKTGDIDNSEEMIIPFPAPKG VDKAHSHEERELEIRGLQECCKTLKSFLQETPPGMPDREKSGGFQVVRLNLWPLPEDG KSTRRRSCDEKGNALRKVSTTSQKSSKSSRRRRRIKEYLEEDNGARDVEQENNDEGSI SYSTFDLEIRSRRWRASTNKINKKGESGLSVPVEAHAS" mobile_element complement(37510896..37510944) /note="source:CACAO_M_S_E90022_F9_scaffold_8 3103 3151" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 37520840..37522857 /locus_tag="TCM_026287" /note="dbxref CacaoGD:Thecc1EG026287" mRNA join(37520840..37521101,37521295..37521463, 37522293..37522857) /locus_tag="TCM_026287" /product="Gb:AAF32477.1, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045312t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS join(37521389..37521463,37522293..37522742) /locus_tag="TCM_026287" /note="paralog of Thecc1EG045312t1" /codon_start=1 /product="Gb:AAF32477.1, putative" /protein_id="EOY11021.1" /translation="MGAAHTTSTSSCQEGLFILPVSNCLVKIVSFISSKLKATREPPR TNLLVKDVDIRRTCTRLDCFLSRRLFSSKSVRLYQYEEHQFDKLVKIAGTCTTSTPNF PREIIVEIAEAFHKNNCFGGHDLFGNNCEGFATSCRTGHPFSEQIHSIKSIPIIGIIA PILAKGFAKLKLSS" gene complement(37523258..37524834) /locus_tag="TCM_026288" /note="dbxref CacaoGD:Thecc1EG026288" mRNA complement(join(37523258..37524103,37524672..37524834)) /locus_tag="TCM_026288" /product="NC domain-containing-related-like protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026297t1" /inference="similar to AA sequence:Phytozome:Sb02g034480.2" /note="quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.82 coverage" CDS complement(join(37523469..37524103,37524672..37524768)) /locus_tag="TCM_026288" /note="paralog of Thecc1EG026297t1" /codon_start=1 /product="NC domain-containing-related-like protein" /protein_id="EOY11022.1" /db_xref="Phytozome:Sb02g034480.2" /db_xref="TAIR:AT5G16360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0DJA1" /translation="MGQPQTTLTPVRKPQPGDHIYTTRAGGLYAHHGIYVGNDMVIHL QAPFKGSGSSFMGSGSSFMGSASSFMGSGSSFMGSASSFMGSGSSSEEIESSPPCQKC GYKPQYCQGGIIKTCLDCFLDGRSSFEFYEYGVPTSYFNNKPRGTCSVSPSKPDHEVV ERATDLLERKGFGEYNLIANNCEHFAVYCKTGLAYSQQVQAAGDAIKDIAEPLGKGLL CTGAIFAVPAVCVVAKAITGAQRRP" gene complement(37526719..37530430) /locus_tag="TCM_026289" /note="dbxref CacaoGD:Thecc1EG026289" mRNA complement(join(37526719..37527123,37528752..37528795, 37530278..37530430)) /locus_tag="TCM_026289" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033881t1" /inference="similar to AA sequence:Phytozome:POPTR_0002s12940.1" /note="quality class is strong, express is weak, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.15 coverage" CDS complement(join(37526970..37527123,37528752..37528786)) /locus_tag="TCM_026289" /note="paralog of Thecc1EG033881t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11023.1" /db_xref="Phytozome:POPTR_0002s12940.1" /translation="MECFHRQDKQESEEEDELPPEKLAIANVGRQDAKKHLEEHVSNL MSSNIVQTLGTMLDTVVF" mobile_element complement(37529525..37530231) /note="source:CACAO_M_S_E5285_F300_scaffold_1 17251 17965" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(37536106..37539017) /note="source:INTACT153_F18_scaffold_9-int 2451 5388" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(37539238..37539829) /note="source:CACAO_M_E44256_F18_scaffold_5 244 808" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(37540224..37541766) /note="source:CACAO_M_E57101_F8_scaffold_8 26 1588" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 37542832..37545758 /note="source:INTACT1604F_F75_scaffold_10-int 3 3024" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 37545772..37546508 /note="source:CACAO_M_E4063_F12_scaffold_2 7500 7724" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(37552301..37553651) /note="source:CACAO_M_S_E16721_F36_scaffold_2 17779 19108" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(37553530..37557821) /locus_tag="TCM_026293" /note="dbxref CacaoGD:Thecc1EG026293" mRNA complement(join(37553530..37554311,37556740..37557821)) /locus_tag="TCM_026293" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS complement(join(37553667..37554311,37556740..37557366)) /locus_tag="TCM_026293" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11024.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4NCM1" /translation="MGLASRWLLELEEWSPNTAKNLRRCWLSVSGIPLNAWNRTTFFR IDSIWGSFIDIGNETTSIQTFERATILITTNFMSKIDEFINFAVGNQIYSIYVSEFLP DCLLDCPSMTPWKDDDCTDYSTSTNDDNVGDSKGGSATTGSAVIVRGDPSVLAMDSPH ASQNQNCLTLIESAPLLPNPTSQAQSNAHDGPSTKTPANESNETAPLEPNAMRVLSWN VCGLGSPLKTSMVCKAIFDNRVDMIFLQETKMESISDRVIRNLWRSNNLEWAFSPSFE KSGGILSIWDNNSFTPRTTIVKDRFILITGTWTVENFDCVMIIVYAPCDANDKLSLWV DLSSSFSEFLRSWCCAGGFNTVKCLEEQHGCAQFSVGIGDFNNFIDRCELTNLPLVGM KFTWYGPKAKRSRIDRFLLSSQWLLQFQNLC" gene complement(37558940..37560115) /locus_tag="TCM_026294" /note="dbxref CacaoGD:Thecc1EG026294" mRNA complement(join(37558940..37559552,37559998..37560115)) /locus_tag="TCM_026294" /product="NC domain-containing-related-like protein" /inference="alignment:exonerate- protein:2:frave:gene31206.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026284t1" /inference="similar to AA sequence:frave:gene31206" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.14 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc6345t1" CDS complement(join(37559113..37559552,37559998..37560079)) /locus_tag="TCM_026294" /note="dbxref frave:gene31206; paralog of Thecc1EG026284t1" /codon_start=1 /product="NC domain-containing-related-like protein" /protein_id="EOY11025.1" /db_xref="TAIR:AT5G16360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FFE7" /translation="MRTVRRDALRPGDHIYSDRKLRLYFHHGIYVGDDMVIHLMGPSK IYNKPPCKKCGFKPQAGIFKTCLDCFLEGHSLYRYEYDVSYLKLVFKRRGSCSTWDCK PEDEVVETAHRLLESKSFGNYNFFLNNCEDFAVYCKTGVAMSNQTAGLFGFNLLGVVG YAATKGIYEAVAD" mobile_element complement(37564513..37564791) /note="source:CACAO_on_S_E46_scaffold_2 1179 1426" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(37565209..37565903) /note="source:CACAO_on_E459_scaffold_2 1866 2553" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(37565885..37567417) /note="source:scaffold_5_CACTA_0584 7148 8688" /mobile_element_type="transposon:TIR/CACTA" mobile_element 37568005..37569690 /note="source:CACAO_M_E44250_F3_scaffold_5 1 1686" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(37570533..37572125) /locus_tag="TCM_026297" /note="dbxref CacaoGD:Thecc1EG026297" mRNA complement(join(37570533..37571377,37571986..37572125)) /locus_tag="TCM_026297" /product="NC domain-containing-related-like protein" /inference="alignment:exonerate- protein:2:frave:gene12620.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026288t1" /inference="similar to AA sequence:frave:gene12620" /note="quality class is medium, express is medium, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.62 coverage" CDS complement(join(37570872..37571377,37571986..37572085)) /locus_tag="TCM_026297" /note="dbxref frave:gene12620; paralog of Thecc1EG026288t1" /codon_start=1 /product="NC domain-containing-related-like protein" /protein_id="EOY11026.1" /db_xref="TAIR:AT3G02700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0DJA1" /translation="MGQPQSMLIPHERKPQPGDHIYSTRAGGLYAHHGIYVGNDMVIH LQAPPKGSGSSTPCQKCGYKRDCQGGIIKTCLDCFLDGRSSLEFYEYGSSIFEFNIKK RGSCTIFHTKPADEVVKTANDLLQGNGSKFKDYNFFANNCEDFAVYCKTGMAVSMQAV GGVEAASNIFGTGSLFGMGVNLGAVGVYSLAKVIHDANTAK" gene complement(37572772..37574594) /locus_tag="TCM_026298" /note="dbxref CacaoGD:Thecc1EG026298" mRNA complement(join(37572772..37573472,37574479..37574594)) /locus_tag="TCM_026298" /product="NC domain-containing-related-like protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026303t1" /inference="similar to AA sequence:Phytozome:GSVIVT01005255001" /note="quality class is strong, express is medium, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc6112t1" CDS complement(join(37572991..37573472,37574479..37574560)) /locus_tag="TCM_026298" /note="paralog of Thecc1EG026303t1" /codon_start=1 /product="NC domain-containing-related-like protein" /protein_id="EOY11027.1" /db_xref="Phytozome:GSVIVT01005255001" /db_xref="TAIR:AT3G02700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M872" /translation="MRSVSRGALRPGDHIFSGRMLHLYFHHGIYVGKGTVTKSNNEKE EIDDAVIHFLGIGKSRSESPCERCGHSSRRIGVVITCLDCFLEDHSIYVYKYNVPYLM LCLKRSGTCTVWSSKPADEVIQTAFSLLEKNSFGNYNFFGNNCEDFATYCKTGVATSN QTAGVLFGFGVPGIIGYNVFKGIFYRN" gene complement(37575642..37576514) /locus_tag="TCM_026299" /note="dbxref CacaoGD:Thecc1EG026299" mRNA complement(join(37575642..37576260,37576409..37576514)) /locus_tag="TCM_026299" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042590t2" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(join(37575914..37576260,37576409..37576421)) /locus_tag="TCM_026299" /note="paralog of Thecc1EG042590t2" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11028.1" /translation="MLDCGLIDEGKLDCFNVPFFNPSLDDVQFLVDKEGSLTTEFIDT IAVVIGGQNGHWMSPESRIKGYRCFSEPILSHHFGEEMMDKLYDKATLILVEDFKHGK QATKIINIAVVLKLKEL" mobile_element 37578305..37580143 /note="source:CACAO_M_S_E90022_F9_scaffold_8 12663 14494" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(37583712..37585968) /locus_tag="TCM_026301" /note="dbxref CacaoGD:Thecc1EG026301" mRNA complement(join(37583712..37585184,37585882..37585968)) /locus_tag="TCM_026301" /product="Alpha/beta-Hydrolases superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30190.m010848.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016479t3" /inference="similar to AA sequence:ricco:30190.m010848" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaL_g15337t00001" CDS complement(37584056..37585129) /locus_tag="TCM_026301" /note="dbxref ricco:30190.m010848; paralog of Thecc1EG016479t3" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein, putative" /protein_id="EOY11029.1" /db_xref="TAIR:AT4G10955.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q680C0" /translation="MAGGSDNFSLSGPKHLNSIDWNNAHHRRSVAASLVAGVYVLEAD RQANRRDSQSLAPPWWEFFHFKLIRQLVDDADHCIFGAIFEYKPPKYANYRKDSTGRS PRYVIAFRGTLIKLDSFARDLELDIQIIRNGLHQTTRFGIAMKAVRDKVAEVGDSNVW LTGHSLGAAMAMLAGKTMARTGKFLEAFLFNPPFFSAPIERIKDKKVKHGLRFAGSVI TAGLAIASATKGKYNNASNNGNGYEENLFSVISGWIPCLFVNQADHICSEYIGYFEHR KKMEEIGAGAIARFASQHSLGGLVMNMMGVQGVETAEPLHLLPSANLTVNLNPSKDFM GAHVLCQWWRPDLNLNCGVYKYK" gene complement(37589488..37590549) /locus_tag="TCM_026302" /note="dbxref CacaoGD:Thecc1EG026302" mRNA complement(join(37589488..37590205,37590437..37590549)) /locus_tag="TCM_026302" /product="NC domain-containing-related-like protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s05795.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026298t1" /inference="similar to AA sequence:TAIR:AT5G16360.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc6255t1" CDS complement(join(37589721..37590205,37590437..37590518)) /locus_tag="TCM_026302" /note="paralog of Thecc1EG026298t1" /codon_start=1 /product="NC domain-containing-related-like protein" /protein_id="EOY11030.1" /db_xref="TAIR:AT5G16360.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FFE7" /translation="MKTVRRDALQRSDHIYTDCSWGLYYHHGIYVGKAKVTNPKNGEQ REIYDAVIHLFGPTKDSSNAQCQQCFHLPQNAGVSITCLDCFLGGHSLYVYKYDVSYW KLRLKRSGTCSVWSSKPADEVIQIAFTLLEKNSFGNYNFLFNNCEDFATYCKTGQATS NQAAGVLFGFGLPGVVGYNALKELYFRN" gene complement(37592536..37593716) /locus_tag="TCM_026303" /note="dbxref CacaoGD:Thecc1EG026303" mRNA complement(join(37592536..37593208,37593603..37593716)) /locus_tag="TCM_026303" /product="NC domain-containing-related-like protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s05800.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026298t1" /inference="similar to AA sequence:Phytozome:Glyma14g38930.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaL_g06999t00001" CDS complement(join(37592715..37593208,37593603..37593681)) /locus_tag="TCM_026303" /note="paralog of Thecc1EG026298t1" /codon_start=1 /product="NC domain-containing-related-like protein" /protein_id="EOY11031.1" /db_xref="Phytozome:Glyma14g38930.1" /db_xref="TAIR:AT3G02700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M872" /translation="MPVRRDALRPGDHIYSDRCASIYFHHGIYVGKGTVTKSDDEKEE IDDAVIHFMGVGKSTNRNACKRCGHSSRRIGVVITCLDCFLEGHSLYVYEYDVPYLKL RFKRSGTCSVNPSRPADEVVNTAFDILQNQSFGKKYNFFFNNCEDFATRCKTGEAMSN QFAGLFFGFSLPGVVGYRAAKGIYEAVTED" assembly_gap 37594640..37604639 /estimated_length=10000 /gap_type="between scaffolds" mobile_element 37604640..37607881 /note="source:CACAO_M_E49376_F10_scaffold_7 1770 5012" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(37608805..37608913) /note="source:scaffold_4_CACTA_0482 7617 7734" /mobile_element_type="transposon:TIR/CACTA" mobile_element 37609834..37611066 /note="source:scaffold_4_CACTA_0483 5581 6829" /mobile_element_type="transposon:TIR/CACTA" gene complement(37611423..37612174) /locus_tag="TCM_026305" /note="dbxref CacaoGD:Thecc1EG026305" mRNA complement(join(37611423..37611793,37611973..37612174)) /locus_tag="TCM_026305" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400031023" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007408t1" /inference="similar to AA sequence:ricco:28623.m000396" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete" CDS complement(join(37611674..37611793,37611973..37612146)) /locus_tag="TCM_026305" /note="dbxref ricco:28623.m000396; paralog of Thecc1EG007408t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11032.1" /translation="MTLVASALYGFVLPTIELTYKKAKQTITYFLVMEMQMVISFSAT IFCTIGMHFHKEFEAIPREASKFELGQSTYYLVILLSAILWAYGSSSSWELLE" mobile_element 37612373..37617290 /note="source:CACAO_M_S_E66696_F50_scaffold_5 1 4918" /mobile_element_type="retrotransposon:LTR/Copia" gene 37614899..37617222 /locus_tag="TCM_026307" /note="dbxref CacaoGD:Thecc1EG026307" mRNA join(37614899..37615658,37616138..37616227, 37616363..37617222) /locus_tag="TCM_026307" /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400010769" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG011911t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.22 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10600t1" CDS join(37615484..37615658,37616138..37616227, 37616363..37617078) /locus_tag="TCM_026307" /note="paralog of Thecc1EG011911t1" /codon_start=1 /product="Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /protein_id="EOY11033.1" /db_xref="TAIR:AT4G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BF87" /translation="MSDEITALLRNGTWELAPPSSSHNVIGCKWVFLIKRNPYHSISR YKARLVTKGFHQRPVLSTKSGLLLTQHKYIRDILECTNVVGAKEFNKLAQFMHSPTKT HWFVAKRILRFLKYTIYHGLFLQHHQQLCVSAFTDADWASNRDDRTSTSTHIVYFGGN AISWCSKKQKSVARSSTKAEHRALASCTAEVLWIQNLLRELHAKCLSSPQIFYDNIGA TYLSVDSVFHSRMKHISIDYHIVRDHVARGSFIVSHVSSKNQLVDALTKPLSSIIFRQ LRSKIGISNGSTILRGMLENVYQIKSYWQEIRKLWKDQILSQCTLPCQQI" gene complement(37619745..37625998) /locus_tag="TCM_026308" /note="dbxref CacaoGD:Thecc1EG026308" mRNA complement(join(37619745..37620482,37621195..37621389, 37621889..37622167,37622257..37622405,37622789..37623041, 37624812..37625268,37625799..37625998)) /locus_tag="TCM_026308" /product="RNA-binding KH domain-containing protein" /inference="alignment:exonerate- protein:2:ricco:29680.m001659" /inference="similar to AA sequence:ricco:29680.m001659" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05160t00001" CDS complement(join(37620306..37620482,37621195..37621389, 37621889..37622167,37622257..37622405,37622789..37623041, 37624812..37625258)) /locus_tag="TCM_026308" /note="dbxref ricco:29680.m001659" /codon_start=1 /product="RNA-binding KH domain-containing protein" /protein_id="EOY11034.1" /db_xref="TAIR:AT3G04610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q58T16" /translation="MAEVDQSFVEHEEEQVQEPENSEENLNLEQNLSLEQNLNLEPNL NLEPNLNLEPDLNLEENAEENLEEQNLQQESPHQPKQEHEDEAVVGGVEKKWPGWPGE SVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMVSAKEEPDS SLPPAMDGLLRVHKRIVDGLDGDSSHAPTAVGTKVSTRLLVPASQAGSLIGKQGTTVK SIQESSGCVVRVLGAEDLPVFALQDDRVVEVVGEAAGVHKAVELIASHLRKFLVDRSI IPLFEMHMQMSNPQMDHMPPHQSWGPPQGVPPNASGGAGFGHNPQYMPPPRQLDNYYP PADMPPPIEKQPHQGISAYGREAPMGAHASSNPQSAPSMITQVTQQMQIPLSYADAVI GTAGASISYIRRASGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFMAEAAAP AQGQTGGATDQAYNPYAAHSSVYASPPSNPGHAGHTGGYGSVYGSNYGY" gene complement(37628230..37630071) /locus_tag="TCM_026310" /note="dbxref CacaoGD:Thecc1EG026310" mRNA complement(join(37628230..37628669,37628781..37628845, 37628935..37628997,37629280..37629328,37629925..37630071)) /locus_tag="TCM_026310" /product="Alba DNA/RNA-binding protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g30580.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038055t1" /inference="similar to AA sequence:ricco:29680.m001658" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc2742t1" CDS complement(join(37628577..37628669,37628781..37628845, 37628935..37628997,37629280..37629328,37629925..37630032)) /locus_tag="TCM_026310" /note="dbxref ricco:29680.m001658; paralog of Thecc1EG038055t1" /codon_start=1 /product="Alba DNA/RNA-binding protein" /protein_id="EOY11035.1" /db_xref="TAIR:AT3G04620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SR12" /translation="MAVETVAAAEGDAQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNE VELSALGMAITTVVTIAEILKNNGLAIEKKVMTSTVGMKDENKGRVVQKAKIEIVLGK SEKFDLLMNAANVPPEGASKDEE" mobile_element complement(37634297..37634383) /note="source:CACAO_Mariner_E176_scaffold_6 7749 7831" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 37635152..37635251 /note="source:CACAO_on_SS_E42_scaffold_2 3139 3238" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(37635604..37635644) /note="source:scaffold_4_CACTA_0482 7690 7730" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(37637013..37637097) /note="source:CACAO_M_E34420_F305_scaffold_5 1456 1539" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 37639150..37639218 /note="source:CACAO_M_E5326_F22_scaffold_2 3412 3481" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 37642443..37647158 /locus_tag="TCM_026311" /note="dbxref CacaoGD:Thecc1EG026311" mRNA join(37642443..37642667,37644343..37644754, 37645203..37645300,37645533..37645626,37645745..37645816, 37645942..37646052,37646478..37647031) /locus_tag="TCM_026311" /product="TPX2 family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:29598.m000442" /inference="similar to AA sequence:Phytozome:GSVIVT01036233001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10664t2; inference alignment:Newbler:10:TSA:cgbaP1_g00520t00001_C2" mRNA join(37642520..37642790,37644343..37644754, 37645203..37645314,37645508..37645626,37645745..37645816, 37645942..37646052,37646478..37647158) /locus_tag="TCM_026311" /product="TPX2 family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:29598.m000442" /inference="similar to AA sequence:Phytozome:GSVIVT01036233001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00520t00001_C2" CDS join(37644347..37644754,37645203..37645314, 37645508..37645626,37645745..37645816,37645942..37646052, 37646478..37646780) /locus_tag="TCM_026311" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="TPX2 family protein, putative isoform 1" /protein_id="EOY11036.1" /db_xref="Phytozome:GSVIVT01036233001" /db_xref="TAIR:AT1G54460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TXI7" /translation="MGRELADVHMDNKPNGVVNSNGVVNSNGNPRISEGTESKNYEVK ECTAENSVVENGHEKQDVLGVKSTNFGIDLPEGKNEKAGDQKSSDNKKLSSPASKSSG AGNIHVHHATSKTVANGTADVSSSPSPTATKNSEPNSPLTPLMLRKPLQPYDRKHPDE EDNWSVASSYPLFVEFSLAMSSTAVSVRTARSRVTIGTAPTFRSAERAEKRKEFYQKL EEKHQALEAERSQCEARTKEEQEAALKQLRKNMVVRANPIPSFYYEGPPPKVELKKLP LTRPKSPNLTRRKSCGDAVHASLDEKAKTCCRTHRHSLGSHREASTTANALKSKGQLS GQSSNGAGKVKTRAKQVKETTKAAPPKITEQSNANITVQS" CDS join(37644347..37644754,37645203..37645300, 37645533..37645626,37645745..37645816,37645942..37646052, 37646478..37646780) /locus_tag="TCM_026311" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="TPX2 family protein, putative isoform 2" /protein_id="EOY11037.1" /db_xref="Phytozome:GSVIVT01036233001" /db_xref="TAIR:AT1G54460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TXI7" /translation="MGRELADVHMDNKPNGVVNSNGVVNSNGNPRISEGTESKNYEVK ECTAENSVVENGHEKQDVLGVKSTNFGIDLPEGKNEKAGDQKSSDNKKLSSPASKSSG AGNIHVHHATSKTVANGTADVSSSPSPTATKNSEPNSPLTPLMLRKPLQPYDRKHPDE EDNWSVASSTAVSVRTARSRVTIGTAPTFRSAERAEKRKEFYQKLEEKHQALEAERSQ CEARTKEEQEAALKQLRKNMVVRANPIPSFYYEGPPPKVELKKLPLTRPKSPNLTRRK SCGDAVHASLDEKAKTCCRTHRHSLGSHREASTTANALKSKGQLSGQSSNGAGKVKTR AKQVKETTKAAPPKITEQSNANITVQS" gene 37647304..37652168 /locus_tag="TCM_026312" /note="dbxref CacaoGD:Thecc1EG026312" mRNA join(37647304..37647887,37648679..37648948, 37649151..37649277,37649978..37650039,37650123..37650347, 37650736..37650857,37651140..37651278,37651494..37651696, 37651794..37652168) /locus_tag="TCM_026312" /product="FAD/NAD(P)-binding oxidoreductase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s05760.1" /inference="similar to AA sequence:Phytozome:POPTR_0005s05760.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05814t00001" CDS join(37647543..37647887,37648679..37648948, 37649151..37649277,37649978..37650039,37650123..37650347, 37650736..37650857,37651140..37651278,37651494..37651655) /locus_tag="TCM_026312" /codon_start=1 /product="FAD/NAD(P)-binding oxidoreductase family protein" /protein_id="EOY11038.1" /db_xref="Phytozome:POPTR_0005s05760.1" /db_xref="TAIR:AT3G04650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SZ52" /translation="MALSTLPIFSSPFLFPLKTPKPFKPQKPLTITCSSQEPKRPFKA PQRPTSRNRKRRPYGTSRRSILKKTFTQEQVKFTASVSDDPHVGIVGGGMAGLVCALS LEKRGVKSTVFDTGMHGLGGRMGTRVIDPQQLIFDHAAQFFTVSDSWFAELVDYWLEK GLVRQWQGLVGALELGGHFVPLPPSPPRFIGVKGMRPLADSLLSETSMVNVVRPCWIS KLEPFNGMWHLSENGKPCGQFDAIVIAHNGKCANRLLASSGLPLIAKQMKRLELSSIW ALLAAFEDPLPIGDGKVTFEGAFVKGVDSVSWMANNSMKLLGSQSNGPHCWTFFSTAA YGKRNKVPQENIPTATAEKVKTSMLEGVEAALGLPKQSLQRPFYSRVQLWGAALPTNT PGIPCIFDPDGRAGICGDWLLGSSLESAALSGMALGNHIADYLQSDEACPEEFAVGLE KEFQAIQGHDIGQFPGVESSRQDSEMPAYQLAT" gene complement(37652136..37653199) /locus_tag="TCM_026313" /note="dbxref CacaoGD:Thecc1EG026313" mRNA complement(join(37652136..37652955,37653048..37653199)) /locus_tag="TCM_026313" /product="Winged-helix DNA-binding transcription factor family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036230001" /inference="similar to AA sequence:TAIR:AT2G30620.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.34 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00169t00002_C1" CDS complement(join(37652419..37652955,37653048..37653149)) /locus_tag="TCM_026313" /codon_start=1 /product="Winged-helix DNA-binding transcription factor family protein" /protein_id="EOY11039.1" /db_xref="TAIR:AT2G30620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P37218" /translation="MAYATNSAAAPVAKKKSAGAKKPKSASSHPPFLEMISDAIVTLK EKTGSSQYAITKFIEEKHKQLPSNFRKLLLVQMKKFVASGKLVKVKASYKLPPASAAA KKPAAAKPKATSSTAAKPKPRTAKATTKPKAKTKVATPVKPKAKTTVKPKATPKAKAK PAAKPAKAAKTAKKSSPGKKVKAPAKKKAAVAKKPRSVKSPAKKATPKKTKK" mobile_element 37655811..37656127 /note="source:CACAO_Mariner_E176_scaffold_6 8624 8940" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(37655819..37656169) /note="source:CACAO_MITE_S227_scaffold_9 563 982" /mobile_element_type="transposon:TIR/MITE" mobile_element 37656280..37656689 /note="source:MITE_PIF_Tourist_6 2 419" /mobile_element_type="transposon:TIR/MITE" gene complement(37657896..37660017) /locus_tag="TCM_026314" /note="dbxref CacaoGD:Thecc1EG026314" mRNA complement(join(37657896..37658084,37658691..37658816, 37658901..37660017)) /locus_tag="TCM_026314" /product="WRKY DNA-binding protein 21 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s05700.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004187t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s05700.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07668t00001; inference alignment:Newbler:10:TSA:cgbaB_g07668t00001" CDS complement(join(37657937..37658084,37658691..37658816, 37658901..37659685)) /locus_tag="TCM_026314" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG004187t1" /codon_start=1 /product="WRKY DNA-binding protein 21 isoform 1" /protein_id="EOY11040.1" /db_xref="Phytozome:POPTR_0005s05700.1" /db_xref="TAIR:AT5G28650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GXM5" /translation="MEEVEQANKAAIESCHRVLSLLSSPKDQVQYSNLMMETGEAVFK FKKVVSLLSNDLSHARVRKLKKFRSTLPQKIFLESPNCRTILSPKPLQVYRSNLFDKP PFDLDARAKNHLQLTPKVFFENPSFEMNSSVKPSLRTAQIKPSQDYHFVHHQQQMQRL QFQQQQVKYQADMAFSKNNSGMNIKFDGSSCTPTMSSTRSFVSSLSMDGSVTNLDGNS FHLIGMPHHFDQISQQSRRRCSGRAEDGSMKCGTTGKCHCSKRRKLRIKRSIKVPAIS NKVADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCLEDPSMLIVT YEGEHNHSRLLSTQSAHT" mRNA complement(join(37658057..37658354,37658691..37658816, 37658901..37659888)) /locus_tag="TCM_026314" /product="WRKY DNA-binding protein 21 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s05700.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004187t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s05700.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1125t1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1125t1; inference alignment:Newbler:10:TSA:cgbaB_g07668t00001" CDS complement(join(37658327..37658354,37658691..37658816, 37658901..37659685)) /locus_tag="TCM_026314" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG004187t1" /codon_start=1 /product="WRKY DNA-binding protein 21 isoform 2" /protein_id="EOY11041.1" /db_xref="Phytozome:POPTR_0005s05700.1" /db_xref="TAIR:AT5G28650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6GXM5" /translation="MEEVEQANKAAIESCHRVLSLLSSPKDQVQYSNLMMETGEAVFK FKKVVSLLSNDLSHARVRKLKKFRSTLPQKIFLESPNCRTILSPKPLQVYRSNLFDKP PFDLDARAKNHLQLTPKVFFENPSFEMNSSVKPSLRTAQIKPSQDYHFVHHQQQMQRL QFQQQQVKYQADMAFSKNNSGMNIKFDGSSCTPTMSSTRSFVSSLSMDGSVTNLDGNS FHLIGMPHHFDQISQQSRRRCSGRAEDGSMKCGTTGKCHCSKRRKLRIKRSIKVPAIS NKVADIPPDEYSWRKYGQKPIKGSPHPSLRIITMTN" mobile_element complement(37662309..37663138) /note="source:CACAO_on_E137_scaffold_4 1 830" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(37665561..37669188) /locus_tag="TCM_026315" /note="dbxref CacaoGD:Thecc1EG026315" mRNA complement(37665561..37669188) /locus_tag="TCM_026315" /product="Malectin/receptor-like protein kinase family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s03980.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021367t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s05690.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10648t1" CDS complement(37666018..37668594) /locus_tag="TCM_026315" /note="paralog of Thecc1EG021367t1" /codon_start=1 /product="Malectin/receptor-like protein kinase family protein" /protein_id="EOY11042.1" /db_xref="Phytozome:POPTR_0005s05690.1" /db_xref="TAIR:AT3G04690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SR05" /translation="MATRNYFVFSIVWFSLIFSVIHVSSQPLAVDCGSKGGKDEDGRT WEPDTKYLLPSNSSVQLQAGYQDPSLLSTVPYMNARIFTSPATYQFPIKMKERYLVRF HFYPSAYLNFNISNSYISVVAAGVTLMNNFSAAITCQALTQAYLVKEYSLAPMDTKVL NITFTPSTNYTNSFAFINGIELIAMPNLFGMTNLVGYGSSSVDVSTENLQMMFRLNVG GQSISPSKDAGGLLRSWYNDDPYLFGAAMGVNLEASKNLRVDYKDLPKSSAPEDIYRT ARAMGRDSQLNLKFNLTWLFQVDANFTYIVRLHFCEFQLDKVNQRVFNVYINNQSAQA DPTPADIIAWTNGKGVPIYKDYAIVVSDGPGDEMVRIDITPSTASKPEYYDSQLNGVE IFKLNDGSKNLGGSNPQPSAMLLQAESEPKKSFKSNNVVIGGATGGAAAAFVVVALIV VYTKKKRVHGVESHTSSWLPLYGNSHTTGSKSHGKSHSSHLSTLAQGLSRHFSISEIK QATKNFDESNVIGVGGFGKVYKGAIDGGTKVAIKRSNPSSEQGINEFQTEIEMLSKLR HKHLVSLIGFCEDGGEMCLVYDYMARGTFREHIYNNKKSHLSWKQRLEICIGAARGLH YLHTGAKYTIIHRDVKTTNILLDENWVAKVSDFGLSKTGPDMNQGHVSTVVKGSFGYL DPEYFRRQQLTEKSDVYSFGVVLFEALCARPALNPSLPKEQVSLADWALHCQKKGVLE DIIDPHLKGKIDPECLKKFADTAEKCLSDHGLERPHMGDVLWNLEFALQLQETADGSK GGGSSSTGDQGSVRSTDSSVRSQRQGVHVGNLSLGSEHEVNEEVNNESAIFSQLVNPK GR" gene 37671798..37673045 /locus_tag="TCM_026316" /note="dbxref CacaoGD:Thecc1EG026316" mRNA join(37671798..37672587,37672783..37673045) /locus_tag="TCM_026316" /product="1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase epsilon-1" /inference="alignment:exonerate- protein:2:ricco:29598.m000448" /inference="similar to AA sequence:ricco:29598.m000448" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g10842t00001" CDS join(37672074..37672587,37672783..37672862) /locus_tag="TCM_026316" /note="dbxref ricco:29598.m000448" /codon_start=1 /product="1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase epsilon-1" /protein_id="EOY11043.1" /db_xref="TAIR:AT1G08790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MZC1" /translation="MVKEGEPKTKSITSSSSSLSSSTSLCDSETEDLQRMPLVPSQLM KNKRCLSKQLSMCETSRDIAWEKRRRQILRQERGKNGIIVTNGLTDEDLHELKGCIEL GFGFKEEEGQKLCNTLPALDLYFAVNRQLSPSPVSTPQSGGSSSTSSLGGRSSSFGSP TSESDWKICSPGDNPQQVKTKLRHWAQAVACSVMQSS" gene 37673854..37679378 /locus_tag="TCM_026317" /note="dbxref CacaoGD:Thecc1EG026317" mRNA join(37673854..37674180,37674484..37674546, 37674648..37674818,37674941..37675072,37675332..37675471, 37675648..37675734,37676106..37676231,37676824..37676976, 37677455..37677526,37677741..37677842,37678202..37678372, 37678467..37678546,37678942..37679378) /locus_tag="TCM_026317" /product="Ankyrin repeat family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036270001" /inference="similar to AA sequence:Phytozome:GSVIVT01036270001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01790t00001" CDS join(37674150..37674180,37674484..37674546, 37674648..37674818,37674941..37675072,37675332..37675471, 37675648..37675734,37676106..37676231,37676824..37676976, 37677455..37677526,37677741..37677842,37678202..37678372, 37678467..37678546,37678942..37678996) /locus_tag="TCM_026317" /codon_start=1 /product="Ankyrin repeat family protein" /protein_id="EOY11044.1" /db_xref="Phytozome:GSVIVT01036270001" /db_xref="TAIR:AT3G04710.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MZC4" /translation="MAPDASAALAVRQKVQNFLNAACTGNLDLLKKVASQLDDGKGLA KTVADIKDANKRGAIHFAAREGKTEVCKYLLEELKLDVDTKDEDGETPLLHAARQGHT VTAKYLLEHGANPSIPSDLGATALHHSAGIGNIELLKYLLAKGVEVDSQSDSGTPLVW AAGHGQHDASKVLLEHHANPNAETEDNITPLLSAVAAGSLACLDLLIQAGAKVNVIAG GATPLHIAADIGSPELVNSLLKAGADPNVIDEDGQKPIQVAAGRGQRGAVEILFPLTS KIDTIPEWTVDGILEFMQSEANKQMEEMKNLKEAKAARDTTLPTTDLPEVTPEAKKRA AEAKSRGDEAFKRKDFQMAVDAYTQAIDLDPTDATLHSNRSLCWIRLGQAEHALTDAK ACRALRPDWPKACYREGAALRLLQKYDEAANAFYEGVKLDPENKELVNAFREAVESGR KFHSTDKDKS" gene 37679695..37681510 /locus_tag="TCM_026318" /note="dbxref CacaoGD:Thecc1EG026318" mRNA 37679695..37681510 /locus_tag="TCM_026318" /product="PRA1 (Prenylated rab acceptor) family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004199t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s05640.1" /note="quality class is medium-utrpoor, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS 37679985..37680551 /locus_tag="TCM_026318" /note="paralog of Thecc1EG004199t1" /codon_start=1 /product="PRA1 (Prenylated rab acceptor) family protein, putative" /protein_id="EOY11045.1" /db_xref="Phytozome:POPTR_0005s05640.1" /db_xref="TAIR:AT1G55190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MZC5" /translation="MPPTTTTYGTITSNPTSTSSRAKHTRRPWPELFSFSSLSLPSSS TDAKARIKLNLSYFRVNYVIIMLTILFLTLLWHPVSMIIFLITFIFWWFFYLFNDNPV VVFNKTVDDNVVLGGLSFATVVLLVLTHVGVNVLVGLIIGVVVVGVHAGFRGTEDLGF GGEEEEENGLLSVVGSQPLRPTSGYNRI" gene complement(37682458..37684087) /locus_tag="TCM_026319" /note="dbxref CacaoGD:Thecc1EG026319" mRNA complement(join(37682458..37682951,37683688..37683801, 37683911..37684009)) /locus_tag="TCM_026319" /product="ABI3-interacting protein 3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036275001" /inference="similar to AA sequence:ricco:29598.m000454" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03486t00001; inference alignment:Newbler:10:TSA:cgbaL_g03486t00001" CDS complement(join(37682691..37682951,37683688..37683801, 37683911..37683919)) /locus_tag="TCM_026319" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29598.m000454" /codon_start=1 /product="ABI3-interacting protein 3 isoform 1" /protein_id="EOY11046.1" /db_xref="TAIR:AT1G08780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M4B5" /translation="MQQGTGGSETEVTWEDQQNINKFGRLNNRFHELEDEIKIAKETN DNLEDASNELILTDEEVVRFQIGEVFAHVPKEEVETRIEEMKEVTSKNLEKLEEEKES VLAQMAELKKILYGKFKDSINLEED" mRNA complement(join(<37682765..37682951,37683688..37684087)) /locus_tag="TCM_026319" /product="ABI3-interacting protein 3 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036275001" /inference="similar to AA sequence:ricco:29598.m000454" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is medium, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc144t22; inference alignment:Newbler:10:TSA:cgbaL_g03486t00001" CDS complement(join(<37682766..37682951,37683688..37683849)) /locus_tag="TCM_026319" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29598.m000454" /codon_start=1 /product="ABI3-interacting protein 3 isoform 2" /protein_id="EOY11047.1" /db_xref="TAIR:AT1G08780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M4B5" /translation="MCSSFVLGLNDKRFLKGTGGSETEVTWEDQQNINKFGRLNNRFH ELEDEIKIAKETNDNLEDASNELILTDEEVVRFQIGEVFAHVPKEEVETRIEEMKEVT SKNLEKLEEEKESV" gene complement(37684684..37689759) /locus_tag="TCM_026320" /note="dbxref CacaoGD:Thecc1EG026320" mRNA complement(join(37684684..37685170,37685747..37685819, 37686041..37686091,37686253..37686749,37686892..37687225, 37687908..37688007,37689262..37689759)) /locus_tag="TCM_026320" /product="DREB2A-interacting protein 2 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29598.m000455" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004200t1" /inference="similar to AA sequence:ricco:29598.m000455" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01139t00002_C1" mRNA complement(join(37684847..37685170,37685747..37685819, 37686041..37686091,37686253..37686749,37686862..37687225, 37687908..37688007,37689262..37689482)) /locus_tag="TCM_026320" /product="DREB2A-interacting protein 2 isoform 2" /inference="alignment:exonerate- protein:2:ricco:29598.m000455" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004200t1" /inference="similar to AA sequence:ricco:29598.m000455" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01139t00001_C1; inference alignment:Newbler:10:TSA:cgbaB_g01139t00002_C1" CDS complement(join(37684997..37685170,37685747..37685819, 37686041..37686091,37686253..37686749,37686892..37687225, 37687908..37688007,37689262..37689385)) /locus_tag="TCM_026320" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29598.m000455; paralog of Thecc1EG004200t1" /codon_start=1 /product="DREB2A-interacting protein 2 isoform 1" /protein_id="EOY11048.1" /db_xref="TAIR:AT2G30580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5G3" /translation="MAGGHHHVVKVKRETLESCMTCPLCNKLLREATTISLCLHTFCR KCIYEKLSDEGMDCCPVCDIELGCLPVDKLRPDHNLQDIRAKVFPFKRRKIRAPEVMP STSPPAKRKERSLSSLVVSTPKVPMQTGLTGRRTKATARKRVAAFRGCNFSVEESLKK EDFAEDHPSGTSSPDSSNKISQSKRQDSSMAEPSSERRSNEDTDDVEMLEGKADLWTP LNCLVEAANRKSSKLNSQGLATSKAEPHNAPDCHLYIPETKADLESATVPDGKLCIPK AKSKEHGQNTKVQDEKNGASLISRPVKRRRLRAAAQKRAAASQQAASARVMLDTLGAK CNRKESPIWFSLVASEDQKGDASLPQISACYLRIKDGKMPVSFIQKYLVKKLDLASEA EVEIMCRAQPVLPTLQLHNLVDLWFRTASTAKKVPASVGSSAKDFVMVLSYRRKVQAP " CDS complement(join(37684997..37685170,37685747..37685819, 37686041..37686091,37686253..37686749,37686862..37687225, 37687908..37688007,37689262..37689385)) /locus_tag="TCM_026320" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29598.m000455; paralog of Thecc1EG004200t1" /codon_start=1 /product="DREB2A-interacting protein 2 isoform 2" /protein_id="EOY11049.1" /db_xref="TAIR:AT2G30580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5G3" /translation="MAGGHHHVVKVKRETLESCMTCPLCNKLLREATTISLCLHTFCR KCIYEKLSDEGMDCCPVCDIELGCLPVDKLRPDHNLQDIRAKVFPFKRRKIRAPEVMP STSPPAKRKERSLSSLVVSTPKVPMQTGLTGRRTKATARKRVAAFRGCNFSVEESLKK EDFAEDHPSGTSSPDSSNKISQSKRQVKEAGERFFKDSSMAEPSSERRSNEDTDDVEM LEGKADLWTPLNCLVEAANRKSSKLNSQGLATSKAEPHNAPDCHLYIPETKADLESAT VPDGKLCIPKAKSKEHGQNTKVQDEKNGASLISRPVKRRRLRAAAQKRAAASQQAASA RVMLDTLGAKCNRKESPIWFSLVASEDQKGDASLPQISACYLRIKDGKMPVSFIQKYL VKKLDLASEAEVEIMCRAQPVLPTLQLHNLVDLWFRTASTAKKVPASVGSSAKDFVMV LSYRRKVQAP" mRNA complement(join(37685147..37685170,37685747..37685819, 37686041..37686749,37686892..37687225,37687908..37688007, 37689262..37689752)) /locus_tag="TCM_026320" /product="DREB2A-interacting protein 2 isoform 4" /inference="alignment:exonerate- protein:2:ricco:29598.m000455" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004200t1" /inference="similar to AA sequence:ricco:29598.m000455" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1354t2; inference alignment:Newbler:10:TSA:cgbaB_g01139t00002_C1" mRNA complement(join(<37685627..37685819,37686041..37686091, 37686253..37686749,37686892..37687225,37687908..37688007, 37689262..37689722)) /locus_tag="TCM_026320" /product="DREB2A-interacting protein 2 isoform 3" /inference="alignment:exonerate- protein:2:ricco:29598.m000455" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004200t3" /inference="similar to AA sequence:ricco:29598.m000455" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1221t3_C2; inference alignment:Newbler:10:TSA:cgbaB_g01139t00002_C1" CDS complement(join(<37685627..37685819,37686041..37686091, 37686253..37686749,37686892..37687225,37687908..37688007, 37689262..37689385)) /locus_tag="TCM_026320" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29598.m000455; paralog of Thecc1EG004200t3" /codon_start=1 /product="DREB2A-interacting protein 2 isoform 3" /protein_id="EOY11050.1" /db_xref="TAIR:AT2G30580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5G3" /translation="MAGGHHHVVKVKRETLESCMTCPLCNKLLREATTISLCLHTFCR KCIYEKLSDEGMDCCPVCDIELGCLPVDKLRPDHNLQDIRAKVFPFKRRKIRAPEVMP STSPPAKRKERSLSSLVVSTPKVPMQTGLTGRRTKATARKRVAAFRGCNFSVEESLKK EDFAEDHPSGTSSPDSSNKISQSKRQDSSMAEPSSERRSNEDTDDVEMLEGKADLWTP LNCLVEAANRKSSKLNSQGLATSKAEPHNAPDCHLYIPETKADLESATVPDGKLCIPK AKSKEHGQNTKVQDEKNGASLISRPVKRRRLRAAAQKRAAASQQAASARVMLDTLGAK CNRKESPIWFSLVASEDQKGDASLPQISACYLRIKDGKMPVSFIQKYLVKKLDLASEA EVRSPLPGFCFPRKLRMSKFHHSEIEMLCCCNFMLICCYRL" CDS complement(join(37686249..37686749,37686892..37687225, 37687908..37688007,37689262..37689385)) /locus_tag="TCM_026320" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29598.m000455; paralog of Thecc1EG004200t1" /codon_start=1 /product="DREB2A-interacting protein 2 isoform 4" /protein_id="EOY11051.1" /db_xref="TAIR:AT2G30580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5G3" /translation="MAGGHHHVVKVKRETLESCMTCPLCNKLLREATTISLCLHTFCR KCIYEKLSDEGMDCCPVCDIELGCLPVDKLRPDHNLQDIRAKVFPFKRRKIRAPEVMP STSPPAKRKERSLSSLVVSTPKVPMQTGLTGRRTKATARKRVAAFRGCNFSVEESLKK EDFAEDHPSGTSSPDSSNKISQSKRQDSSMAEPSSERRSNEDTDDVEMLEGKADLWTP LNCLVEAANRKSSKLNSQGLATSKAEPHNAPDCHLYIPETKADLESATVPDGKLCIPK AKSKEHGQNTKVQDEKNGASLISRPVKRRRLRAAAQKRAAASQQAASARVMLDTLGAK CNRKESPIWFSLVASEDQ" gene 37690822..37692002 /locus_tag="TCM_026321" /note="dbxref CacaoGD:Thecc1EG026321" mRNA join(37690822..37691052,37691222..37691627, 37691721..37692002) /locus_tag="TCM_026321" /product="Photosystem II reaction center W protein, chloroplastic, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01036277001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046978t1" /inference="similar to AA sequence:Phytozome:GSVIVT01000743001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1378t28" CDS join(37690962..37691052,37691222..37691538) /locus_tag="TCM_026321" /note="paralog of Thecc1EG046978t1" /codon_start=1 /product="Photosystem II reaction center W protein, chloroplastic, putative" /protein_id="EOY11052.1" /db_xref="Phytozome:GSVIVT01000743001" /db_xref="TAIR:AT2G30570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q41387" /translation="MATITASNFAAVLPKATLKGSYKVQSSPVLGLPVMATNGRVRCT LEQKRSASSMSLNPSMVASLMAAAAAAMTTTAGPAMALVDERLSTEGTGLPFGLSNNL LGWILFGAFGLIWALYFIYVSSLEEDEDSGLSL" gene complement(37693875..37696422) /locus_tag="TCM_026322" /note="dbxref CacaoGD:Thecc1EG026322" mRNA complement(join(37693875..37694514,37694615..37695019, 37695309..37696422)) /locus_tag="TCM_026322" /product="ATP binding,nucleic acid binding,helicases, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026736t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s04650.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.63 coverage" CDS complement(join(37694020..37694514,37694615..37695019, 37695309..37695845)) /locus_tag="TCM_026322" /note="paralog of Thecc1EG026736t1" /codon_start=1 /product="ATP binding,nucleic acid binding,helicases, putative" /protein_id="EOY11053.1" /db_xref="Phytozome:POPTR_0005s04650.1" /db_xref="TAIR:AT1G12700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I898" /translation="MLRTRPRPAIVSAIVGMKHYETAISLLRQMEFFGIRRDVYTFSI LLNCFCRLHRSDLGFSLLGKMLKLGIQPNTTTFTTLANGLCVEGKLAEAVLLFDEIVR NGYKPDLITYNTIINGLCKVGYTSGAIRLLRKTEQSGYLPDIVTYSSVIDRLCKDKLV TEALNLFSEMTGKGIPPNVEVTRLSTEMVANNCEPDVVFYSMLVDAICKEGMVSEAHD IVEGMIQQGVDPNTITYSTLMDGYCLQGRTEEARKVLNLMITTGCIPNVCSYYILVNG FCKLKKKDEAIELSHEMSKNGLVPNTVTYNALINGMCQHGHVHEAVELFHIMQNRGIE ANIVQCSILIDGLCQVGQLNVARKLFCAVPLKGLHPDVFTYSIMIKGLCKEGLPNEAY ELFRTMEVSDCSQDSCSYNTMIKGFFPNVDASRAMKIIHEMVDKGFSADSSTATMLLD LSCRNGGDQSIFELLRRNYEDDQNVNIK" gene 37695900..37696452 /locus_tag="TCM_026323" /note="dbxref CacaoGD:Thecc1EG026323" mRNA join(37695900..37696065,37696222..37696452) /locus_tag="TCM_026323" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS join(37695929..37696065,37696222..37696417) /locus_tag="TCM_026323" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11054.1" /translation="MRIGKKKRRMGVTKEKETQLQSSSRRRRSAFPGPHLFFTVKIEK KLVRCPLEQKPSAISMSLNPSMVASLMAAAAAAMTTTAGPAMALVDERLSTEGTGLPF GLSNNLLG" gene complement(37696481..37697365) /locus_tag="TCM_026324" /note="dbxref CacaoGD:Thecc1EG026324" mRNA complement(join(37696481..37696996,37697079..37697365)) /locus_tag="TCM_026324" /product="Pathogenesis-related protein P2" /inference="alignment:exonerate- protein:2:frave:gene30565.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027204t1" /inference="similar to AA sequence:Phytozome:GSVIVT01036278001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14946t1" CDS complement(join(37696826..37696996,37697079..37697336)) /locus_tag="TCM_026324" /note="paralog of Thecc1EG027204t1" /codon_start=1 /product="Pathogenesis-related protein P2" /protein_id="EOY11055.1" /db_xref="Phytozome:GSVIVT01036278001" /db_xref="TAIR:AT3G04720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P32045" /translation="MKMERFCILLLACLVASAAAQSASNVRATYHLYNPEQNNWDLTA VSAFCATWDANKPLEWRRKYGWTAFCGPAGPRGQAACGRCLRVTNTGTGAQATVRIVD QCSNGGLDLDVNVFRQLDTNGNGIAQGHLIVNYDFVDCGD" gene complement(37697991..37700454) /locus_tag="TCM_026325" /note="dbxref CacaoGD:Thecc1EG026325" mRNA complement(join(37697991..37698372,37698482..37698648, 37698783..37698860,37698948..37699272,37699370..37699460, 37699765..37699901,37700159..37700454)) /locus_tag="TCM_026325" /product="Retrotransposon, unclassified-like protein" /note="quality class is medium, express is medium, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.38 coverage" CDS complement(join(37698146..37698372,37698482..37698648, 37698783..37698860,37698948..37699272,37699370..37699460, 37699765..37699901,37700159..37700282)) /locus_tag="TCM_026325" /codon_start=1 /product="Retrotransposon, unclassified-like protein" /protein_id="EOY11056.1" /translation="MATTGISVASPPAFTGVNYPFWVVKKRSYLKAFDLWDVVESGRG KHSEYRDKLLKLVNQLRMLQQEVTDQRMVNKILVSMSDKFESKGLSAIGACWKSVQKP KKTKPEAQVAIAKQESNQSLFTNIDTSFISKVKIGNREYMKILGVGIVVVETTSGMRY TTSVHYVPEADHNLLSVGQLADEHYALLFKDKVCTVFDPCGVKMFTVQMKNNCYPMNL KDTMHMAFSLKAYQVLPNQKGCVQPINMESRLGRYCWVYFLKQKSNALKIFTKVKALV ENFSSLTIKTLKSDNGTEFATAEFEKFLAEHGLPKKFWAKALNTANYTKNKVYTRVLS QKTPFDLWFGYKPSVAHLKVFGCICFAKIPDERRYKFDAKSKLTVHNG" gene complement(37701027..37709138) /locus_tag="TCM_026326" /note="dbxref CacaoGD:Thecc1EG026326" mRNA complement(join(37701027..37701542,37701704..37702072, 37708849..37709138)) /locus_tag="TCM_026326" /product="Pathogenesis-related protein P2 isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043895t1" /inference="similar to AA sequence:Phytozome:Glyma03g40770.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11789t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11789t2" mRNA complement(join(37701027..37701542,37701704..37702072, 37702212..>37702456)) /locus_tag="TCM_026326" /product="Pathogenesis-related protein P2 isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043895t1" /inference="similar to AA sequence:Phytozome:Glyma03g40770.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11789t1; inference alignment:Newbler:10:TSA:cgbaP2_g01114t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11789t2" CDS complement(join(37701345..37701542,37701704..37702072, 37708849..37709097)) /locus_tag="TCM_026326" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG043895t1" /codon_start=1 /product="Pathogenesis-related protein P2 isoform 1" /protein_id="EOY11057.1" /db_xref="Phytozome:Glyma03g40770.1" /db_xref="TAIR:AT3G04720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7L2X6" /translation="MKRLSLRILFLACLVAFASAQSASDVIAYWTDYNTTENGWTIPS FCAAVVGGKPLEWRSKYGWTGFCGPNGIQGVDSCGKCLNVTNTATGAYETVRIVDTCG TGGLELDLETAFKPIDTDGNGIKQGHLTVDYAFVDCDADDVPDATDVTAYWTDYQPSQ NSWEIPSFCAAAVGAKPLEWRSKYGWTGFCGPVGPTGVDACGKCLKVTNTETKDEEIV RIVDTCGTGGLELDLETAFKPIDTNGNGIKQGHLIVDYKIVDCDDDAVLVYSQ" CDS complement(join(37701345..37701542,37701704..37702072, 37702212..>37702454)) /locus_tag="TCM_026326" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG043895t1" /codon_start=1 /product="Pathogenesis-related protein P2 isoform 2" /protein_id="EOY11058.1" /db_xref="Phytozome:Glyma03g40770.1" /db_xref="TAIR:AT3G04720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P32045" /translation="RLSLSILFLACLVAFAAAQSASDVTAYWTDYKPTDNGWELPSFC AGVDGDKPLEWRKKYGWTGFCGPSGSQGVDSCGKCLNVTNTATGAYETVRIVDTCGTG GLELDLETAFKPIDTDGNGIKQGHLTVDYAFVDCDADDVPDATDVTAYWTDYQPSQNS WEIPSFCAAAVGAKPLEWRSKYGWTGFCGPVGPTGVDACGKCLKVTNTETKDEEIVRI VDTCGTGGLELDLETAFKPIDTNGNGIKQGHLIVDYKIVDCDDDAVLVYSQ" mobile_element 37705054..37706078 /note="source:CACAO_hAT_E2538_scaffold_5 1 1025" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(37709511..37709833) /note="source:CACAO_Again_on_S_E187_scaffold_5 597 1003" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(37711440..37711531) /note="source:scaffold_9_CACTA_0936 329 420" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(37713674..37714487) /note="source:CACAO_Again_on_S_E199_scaffold_6 1 830" /mobile_element_type="transposon:TIR/hAT" gene complement(37714713..37716374) /locus_tag="TCM_026330" /note="dbxref CacaoGD:Thecc1EG026330" mRNA complement(join(37714713..37715241,37715566..37715952, 37716092..37716374)) /locus_tag="TCM_026330" /product="Pathogenesis-related protein P2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043895t1" /inference="similar to AA sequence:frave:gene16574" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1463t8" CDS complement(join(37715044..37715241,37715566..37715952, 37716092..37716340)) /locus_tag="TCM_026330" /note="dbxref frave:gene16574; paralog of Thecc1EG043895t1" /codon_start=1 /product="Pathogenesis-related protein P2" /protein_id="EOY11059.1" /db_xref="TAIR:AT3G04720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P32045" /translation="MKRLSLSILFLACLVAFAAAQSASDVIAYWADYKATDNGWTIPP FCAEVDGDKPLEWRSQHGWTAFCGPNGPQGVDSCGKCVNVTNTATGAYETVRIVDTCG ADGLVMDLETAFKPIDTDGRGYQNGHLTVDYEFVDCEAVDGDTDDDVPDATNVIAFWA DYNATNNGWVIPPFCAAVDGDKPLEWRSKYGWTAFCGPVGPTGVDACGKCLKITNTET KDEETVRIVDTCGIDGLVLDLETAFKPIDTNGNGINRGHLILDYKVVDCDDDAVLVYS Q" mobile_element complement(37716705..37717008) /note="source:CACAO_Again_on_S_E187_scaffold_5 694 1003" /mobile_element_type="transposon:TIR/hAT" mobile_element 37718833..37720214 /note="source:CACAO_M_E33977_F20_scaffold_4 1418 2776" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(37719121..37720727) /note="source:INTACT179F_F20_scaffold_3-int 3446 5020" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 37720232..37720890 /note="source:INTACT567_F258_scaffold_9-int 6092 6748" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(37720887..37721674) /note="source:CACAO_M_S_E84604_F20_scaffold_6 2184 3456" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 37721618..37723525 /note="source:INTACT567_F258_scaffold_9-int 8983 11228" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(37728143..37728624) /note="source:scaffold_10_CACTA_0130 9003 9605" /mobile_element_type="transposon:TIR/CACTA" mobile_element 37728625..37728995 /note="source:CACAO_on_E565_scaffold_5 757 1149" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(37728996..37729490) /note="source:scaffold_10_CACTA_0130 8380 9002" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(37729497..37729835) /note="source:scaffold_10_CACTA_0130 6253 6594" /mobile_element_type="transposon:TIR/CACTA" mobile_element 37730174..37732793 /note="source:INTACT15_F109_scaffold_3-int 1 2732" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 37733345..37735227 /note="source:INTACT15_F109_scaffold_3-int 2721 4624" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 37735717..37737135 /note="source:CACAO_M_S_E66698_F9_scaffold_5 1 1419" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 37736830..37738060 /locus_tag="TCM_026333" /note="dbxref CacaoGD:Thecc1EG026333" mRNA join(37736830..37736858,37737354..37738060) /locus_tag="TCM_026333" /product="RmlC-like cupins superfamily protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026063t1" /inference="similar to AA sequence:Phytozome:GSVIVT01000071001" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS 37737363..37737893 /locus_tag="TCM_026333" /note="paralog of Thecc1EG026063t1" /codon_start=1 /product="RmlC-like cupins superfamily protein, putative" /protein_id="EOY11060.1" /db_xref="Phytozome:GSVIVT01000071001" /db_xref="TAIR:AT3G05950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SFF9" /translation="MLLVNCQFIIVIFMNGKFCKDLKLATAEDFLFSRLNVPRNTVNL VGSVVTPVNVDQILGLNTLGISLVCIDYAPNGGINPPQTYPHPTEILIVLEGTLRVGF VTFNPDNCLISKVFYLRDVFVFPIGLIHFQQNVRKTNVVAFTGLSSQNPEVITVANAV FGYSPPIDLDVLTRVF" mobile_element 37738769..37739592 /note="source:CACAO_hAT_E2547_scaffold_5 8 854" /mobile_element_type="transposon:TIR/hAT" mobile_element 37739507..37739614 /note="source:CACAO_MITE_S2_scaffold_1 606 705" /mobile_element_type="transposon:TIR/MITE" gene 37741994..37742965 /locus_tag="TCM_026334" /note="dbxref CacaoGD:Thecc1EG026334" mRNA join(37741994..37742329,37742550..37742965) /locus_tag="TCM_026334" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026068t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.20 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc6229t1" CDS join(37742264..37742329,37742550..37742780) /locus_tag="TCM_026334" /note="paralog of Thecc1EG026068t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11061.1" /translation="MSQWCDEAMREDRDVCTTEPIKDDGELDCEEAVRVEEIGECLDL HVKCPCGKGYQMILSGQNCYYKLISIWLSSGFKTFIPSKIEYSSIIIFGFQFFC" gene complement(37743262..37744875) /locus_tag="TCM_026335" /note="dbxref CacaoGD:Thecc1EG026335" mRNA complement(37743262..37744875) /locus_tag="TCM_026335" /product="F-box family protein, putative" /inference="alignment:exonerate- protein:2:ricco:29904.m002918" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026336t1" /inference="similar to AA sequence:frave:gene12233" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete" CDS complement(37743631..37744842) /locus_tag="TCM_026335" /note="dbxref frave:gene12233; paralog of Thecc1EG026336t1" /codon_start=1 /product="F-box family protein, putative" /protein_id="EOY11062.1" /db_xref="TAIR:AT5G07610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MZN0" /translation="MDMASYRASSQRRVKTPAEEVADMDDLLTEILRRLPTKTLLQFK LVSKQWLSLISSPEFSISHTRFLLNEGLLKPSALFLDVIYKQPPTKFVFLPLNRDTKQ LPLLDFMNAPDIKIMQSCTGLLLCTCDYGNQNYFICNPVIKKFKMISLPRPPMLEYQL VGVNLAFDPRKSPYYKIISIWQEVFLEKDEENNCLRHMTSNFSMDIYSSETDSWSVSK IKFTSEVAIQFDHAVFLNGAIHWDSTARESLYFDVGTECLMPMPMPKLRRRYSGPRYF GESGGYLHLAVGRKPAWRLIFRVYELIENYSRWFIMYRVDFEAEMQSFNLIPPYRNYN LFCLTVLCDENKGDSVVAVLESGMTLYYNLRDEEMEVMEVRTDGPKANNYLFDRARFR CCEYFETLARV" gene complement(37746341..37747790) /locus_tag="TCM_026336" /note="dbxref CacaoGD:Thecc1EG026336" mRNA complement(join(37746341..37746800,37746882..37747790)) /locus_tag="TCM_026336" /product="F-box family protein, putative" /inference="alignment:exonerate- protein:2:ricco:29904.m002918" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043889t1" /inference="similar to AA sequence:frave:gene12233" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete" CDS complement(join(37746553..37746800,37746882..37747743)) /locus_tag="TCM_026336" /note="dbxref frave:gene12233; paralog of Thecc1EG043889t1" /codon_start=1 /product="F-box family protein, putative" /protein_id="EOY11063.1" /db_xref="TAIR:AT5G07610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MZN0" /translation="MKTPADEVGMKTPAKKVADIDDLLIEILQRLPTKTLLQFKLVSK QWLSIISSSDFSIFHTRFLLNEGSLKPSVLFLDAIYRKPPTKFVFLPLNRDTKQLPLL DFMNAPYITIIQSCNGLLLCTYDYDNQSYFICNPVIKKFKMISCPMPPMLEYHLVGVN LAFDPLKSPCYKIISIWQEVLLDKDEENNCLCRMTSNFSMDIYSSETDSWNVSKIKFT SEWAIQFDHAVFFNGAIHWDSVAKESLYFDVETECLMPMPMPKPSRRYSGSRYFGESG GYLHLAVGQKPAEMRSINLKPPYCDYDIFCLVVRSDEDKGDSMVAVLQCGTTLYYNFK DKEMEVRTDGPKANGYRYDIARFRGCEYFETLSCV" mobile_element 37750232..37750736 /note="source:CACAO_PIF_E119_scaffold_3 1775 2270" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(37752889..37754368) /note="source:CACAO_M_E4223_F185_scaffold_2 3107 4605" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(37754371..37757035) /note="source:INTACT256_F185_scaffold_2-int 1 2652" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(37757616..37759698) /locus_tag="TCM_026338" /note="dbxref CacaoGD:Thecc1EG026338" mRNA complement(join(37757616..37759078,37759236..37759698)) /locus_tag="TCM_026338" /product="Cysteine/Histidine-rich C1 domain family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Sb02g039045.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026341t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s03690.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.23 coverage" CDS complement(37757987..37759078) /locus_tag="TCM_026338" /note="paralog of Thecc1EG026341t1" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein, putative" /protein_id="EOY11064.1" /db_xref="Phytozome:POPTR_0019s03690.1" /db_xref="TAIR:AT2G21840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPB2" /translation="MQIQHFNHHHPLNFHEVHKEDENLGCKACKLEIHGPAYICKECG YYLHKACTELPNEVLHPLHPQHALNLLTRSPNTRHFICDECGDISDGFLYFCCECHFK VDVKCAGLSAPSNQGQRQKEMARKTKISHFSHDHMLVLGSAKKDYYCSYCQLEIFGLA YCCLDCNDIYVLRESCLEFPEKMQHPFHPLHPLMAKMFLTESCHACDFRFVGISYSCL ECDLHLHPTCLNSMRRALKFNLRTCKLDFFYFGIGCQMLFNGYTCLRCDETGAGPFCF CIEANISLHLECFPIPQMVKSTHHSHPLVLKNSFVEDDTGEYYCDICEEERFAKYHIY YCEECQDMFVTHLECVLFEVNSYMTYVFI" gene complement(37760354..37761188) /locus_tag="TCM_026339" /note="dbxref CacaoGD:Thecc1EG026339" mRNA complement(join(37760354..37760553,37760663..37761188)) /locus_tag="TCM_026339" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026341t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.25 coverage" CDS complement(join(37760397..37760553,37760663..37761147)) /locus_tag="TCM_026339" /note="paralog of Thecc1EG026341t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11065.1" /translation="MNISCAMIIYNTVLCTMTINISIPGYVLNALRKLYLGPIPVKAA TFGSIKTKQQQLPVQITLALHSEHFLDLSFHVSQDFICDKCVCIARGFKYSCEHCSFN LDYFCALKTNEEGRWRCVHKEQRSIIKHFIHQHGLSLFSYRKISILSYVFTWCEEPLS GSLAIFRPIAMLAKGNLISIRIDTIVVMTATSGFILAVQDSYPLSRITAMSMT" mobile_element 37761493..37761543 /note="source:INTACT191_F167_scaffold_9-int 151 200" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(37761863..37762800) /locus_tag="TCM_026340" /note="dbxref CacaoGD:Thecc1EG026340" mRNA complement(join(37761863..37762242,37762359..37762800)) /locus_tag="TCM_026340" /product="Pathogenesis-related protein PR-4B" /inference="alignment:exonerate- protein:2:ricco:29598.m000459" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027204t1" /inference="similar to AA sequence:ricco:29598.m000459" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaB_g14374t00001" CDS complement(join(37762027..37762242,37762359..37762766)) /locus_tag="TCM_026340" /note="dbxref ricco:29598.m000459; paralog of Thecc1EG027204t1" /codon_start=1 /product="Pathogenesis-related protein PR-4B" /protein_id="EOY11066.1" /db_xref="TAIR:AT3G04720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P43082" /translation="MDKVNTVSRLLVFLVSLVGAAVAEQCGWQAGGTICPDNLCCSQY GWCGNTDAYCLPENNCQSNCKSSGPGGETATVTSTYHFYNPEQHGWDLMAVSAYCSTW DASKPFSWRSKYGWTAFCGPVGPTFPAACGRCLRVTNTRTNAQEIVRIVDRCSNGGLD LDVGVFNRLDTDGVGYAQGHLTVKYEFVNCGDGFNPLLSSVVDDSSK" gene complement(37764619..37775708) /locus_tag="TCM_026341" /note="dbxref CacaoGD:Thecc1EG026341" mRNA complement(join(37764619..37764962,37766339..37766386, 37768075..37768353,37768515..37768717,37771465..37771567, 37771970..37773037,37773689..37773895,37774034..37775708)) /locus_tag="TCM_026341" /product="Cysteine/Histidine-rich C1 domain family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026152t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s03690.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.11 coverage" gene complement(37764619..37768025) /locus_tag="TCM_026342" /note="dbxref CacaoGD:Thecc1EG026342" mRNA complement(join(37764619..37764962,37765718..37766083, 37766216..37766386,37767738..37768025)) /locus_tag="TCM_026342" /product="Cysteine/Histidine-rich C1 domain family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026341t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.16 coverage" CDS complement(join(37764900..37764962,37765718..37766083, 37766216..37766386,37767738..37767902)) /locus_tag="TCM_026342" /note="paralog of Thecc1EG026341t1" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein, putative" /protein_id="EOY11068.1" /translation="MNTEFDHGATSLKVDGKVSIEKVMEQGKWEQSNPEFLSELGETI DTSIYKSQQLKMQINHFNRNHPLNFHEVLEEDENPGCQACKLEILTQAYICKKCEYYL HKACTDLHPEFKVDVKCAGMSAPRNQGQRLKEMYRKTKISHFSHEHMLVLGNAKKHYY CSYCQLEIFGLAYCCLDCIYVLHVSCLGFPEEMQHPFHPLHLLVANMADYCVVCNACD IRILGINYSCFECGLEVEEVLSWLVPRIRKKSVELE" CDS complement(join(37768177..37768353,37768515..37768717, 37771465..37771567,37771970..37773037,37773689..37773895, 37774034..37775119)) /locus_tag="TCM_026341" /note="paralog of Thecc1EG026152t1" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein, putative" /protein_id="EOY11067.1" /db_xref="Phytozome:POPTR_0019s03690.1" /db_xref="TAIR:AT2G21840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPB2" /translation="MEIKPFLHEHFLSSYFVDNRHEKCAKCTQEIDDDEFSAYSCESC NFWLHSHCAQQQLPVQITHPLHSEHCLELFSFELNPFICDKCACIACDFKYSCKRCSF NLDYICALKTNEEGRWRCERKEQRSTIQHFIHLHDLSLFNYRKTCLFYYNCSWCKEPL SGRSYGCLDCYFFLHESCTWEMPKTLQHPFHPSHRLFLQFGNLSNRCNACKGQLRTLY SSDQRYDNNRHYCCHECNFWLHLSCARYLPTLKNSCHEHDLTHSLSHHMLTCNVCGEN CDKSIRCACCRCVQCDLNFHFKCASISYEVKHKSHRHELFLKDFVREDDLGEYYCDIC EEKRNSTLHAYYCEKCKYVAHMECVLNEQKSTKKSLPSIPRSMNTEFDHGATTLKVDG KVSIEKVMEQGESKQGSPEFLSELGGTIDTRIYKSGQLKMQVEYFNHEHPLDFHEVFE ENGKPTCQVCKLEICGPSYVCKTCGYWCLHKACYELPPEVLNPLHPHPLSLLTRYPDI LPGRFICDECGDISEGFLYFCFECRQFKVDVKCGGLSGPRNQGQRLKEMDRKTKISHA NHEHMLVLGNAKKGHYCSYCQLEIFGLAYCCLDCDDIYILHESCLDFPEKMQHPFHPL HLLVVNRDFYELCDFCGYGTLAIVYSCFECDLHLHVPCLNSLRQALRFKFGTHKLDFY YIGIGSQMLKEMCWCLRCDESCTGPFYFCKEAYISFHLECFPMPQTVKSTHHIHPLVL KNSFVEDDSGEYYCDICEEKRFREYHIYYCEECQGMFIAHIECVFSQVEEVLSLLVPR ARKNSVELEEKIENRLKGINDRLGRQRKMATVTLGVRSLYQACLMVALIAIASFMNHA LGRYPRSRNILSIRLTIFTCNLAIFGPLAMLAKCNVCGDNCDASGRCAFYRCVQCDLN FHFKCASIPSKVKHESHRHKFFFKDFVREDDLG" mobile_element 37769588..37770670 /note="source:MITE_hAT_12 3 1084" /mobile_element_type="transposon:TIR/MITE" gene complement(37778485..37780450) /locus_tag="TCM_026343" /note="dbxref CacaoGD:Thecc1EG026343" mRNA complement(join(37778485..37778829,37778922..37778983, 37779078..37779464,37780098..37780450)) /locus_tag="TCM_026343" /product="Indoleacetic acid-induced protein 16" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400033829" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004212t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s03870.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g04325t00001" CDS complement(join(37778792..37778829,37778922..37778983, 37779078..37779464,37780098..37780360)) /locus_tag="TCM_026343" /note="paralog of Thecc1EG004212t1" /codon_start=1 /product="Indoleacetic acid-induced protein 16" /protein_id="EOY11069.1" /db_xref="Phytozome:POPTR_0013s03870.1" /db_xref="TAIR:AT3G04730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5F9" /translation="MTSIMDAACDKYSMINFEETELRLGLPGGNGNDGEMTKNNGKRG FSETVDLKLNLSTAKEAVADEAEKVKKKSTVAPRSADPAKPPAKAQVVGWPPVRSFRK NIMAVQKNSSDVEGEKAGSSNTTTATVAAAFVKVSMDGAPYLRKVDLKLYKSYQELSD ALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSEYVPTYEDKDGDWMLVGDVPWEM FVDSCKRLRIMKGSEAIGLAPRAVEKCKNRS" mobile_element 37782791..37782870 /note="source:CACAO_M_E43482_F345_scaffold_5 1172 1250" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(37787786..37789871) /note="source:scaffold_5_CACTA_0615 178 2257" /mobile_element_type="transposon:TIR/CACTA" gene 37790761..37792198 /locus_tag="TCM_026344" /note="dbxref CacaoGD:Thecc1EG026344" mRNA join(37790761..37791188,37791287..37791485, 37791587..37791686,37791801..37792198) /locus_tag="TCM_026344" /product="AUX/IAA transcriptional regulator family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s03860.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020770t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s03860.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b025483t1a2; inference alignment:Newbler:10:TSA:cgbaP2_g13568t00001" mRNA join(37790784..37791188,37791287..37791489, 37791587..37791686,37791801..37791914) /locus_tag="TCM_026344" /product="AUX/IAA transcriptional regulator family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s03860.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020770t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s03860.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g13568t00001; inference alignment:Newbler:10:TSA:cgbaP2_g13568t00001" CDS join(37790989..37791188,37791287..37791489, 37791587..37791686,37791801..37791876) /locus_tag="TCM_026344" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG020770t1" /codon_start=1 /product="AUX/IAA transcriptional regulator family protein isoform 1" /protein_id="EOY11070.1" /db_xref="Phytozome:POPTR_0013s03860.1" /db_xref="TAIR:AT5G43700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GS71" /translation="MAFEKDLNLDATALRLGLPGTSEEQTSASGKSNKRALPDMNEES VSGDNSNVADARKCDQETAPPSKAQVVGWPPIRSYRKNCLQPKKTEAEAAGIYVKVSM DGAPYLRKIDLKVYKGYPELLKALEDMFKFKVGEYSEREGYNGSEFVPTYEDKDGDWM LVGDVPWEMFTNSCKRLRIMKGSEARGLGCVV" CDS join(37790989..37791188,37791287..37791485, 37791587..37791686,37791801..37791829) /locus_tag="TCM_026344" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG020770t1" /codon_start=1 /product="AUX/IAA transcriptional regulator family protein isoform 2" /protein_id="EOY11071.1" /db_xref="Phytozome:POPTR_0013s03860.1" /db_xref="TAIR:AT5G43700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D9ZIN1" /translation="MAFEKDLNLDATALRLGLPGTSEEQTSASGKSNKRALPDMNEES VSGDNSNVADARKCDQETAPPSKAQVVGWPPIRSYRKNCLQPKKTEAEAAGIYVKVSM DGAPYLRKIDLKVYKGYPELLKALEDMFKFKVNIQRGKDTMDQNLYPPMKIKMVTGCW LEMFHGKCSQIPAKG" gene 37793857..37805063 /locus_tag="TCM_026345" /note="dbxref CacaoGD:Thecc1EG026345" mRNA join(37793857..37794640,37795685..37796749, 37797305..37797402,37798536..37798710,37798823..37799840, 37799940..37800958,37801924..37803017,37803869..37805063) /locus_tag="TCM_026345" /product="Mediator of RNA polymerase II transcription subunit 14" /inference="alignment:exonerate-protein:2:frave:gene16566" /inference="similar to AA sequence:Phytozome:GSVIVT01021781001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc317t9" CDS join(37794431..37794640,37795685..37796749, 37797305..37797402,37798536..37798710,37798823..37799840, 37799940..37800958,37801924..37803017,37803869..37804631) /locus_tag="TCM_026345" /codon_start=1 /product="Mediator of RNA polymerase II transcription subunit 14" /protein_id="EOY11072.1" /db_xref="Phytozome:GSVIVT01021781001" /db_xref="TAIR:AT3G04740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HTQ6" /translation="MAELGQQTVEFSSLVSRAAEESFLSLQELVEKSKSSDQSDTEKK INLLKYIVKTQQRMLRLNVLAKWCQQVPLIQYCQQLVSTLSSHDTCFTQAADSLFFMH EGLQQARAPVYDVPSAVEVLLTGSYERLPKSIEAVGMQSSLSEDQQKPALRKLDTLVR SKLLEVSLPKEISEVKVSNGTALLRVDGEFKVLVTLGYRGHLSMWRILHLELLVGEGS GLVKLEEMRRHALGDDLERRMSAAENPFNTLYSVLHELCVALVMDTVIRQVQALRQGR WKDAIRFELISDGGSGGSTQVNQDNESDSAGLRTPGLKLVYWLDFDKNSGASDSGACP YIKIEPGPDLQIKCQHSTFVIDPLTGKEAAFSLDQSCIDVEKLLLRAISCNRYTRLLE IQKELVKNVQICRATSDVVLHSQADEPDSEHKKKDAKLDNKEHEGQEVLRVRAYGSSY FTLGINIRNGRFLLQSSQNILSPSALLDCEEALNQGTMTAADVFTSLRSKSILHLFAS IGRFLGLEVYEHGFAAVKVPKNLVNGSAVLVMGFPDCESSYFLLMELDKDFKPLFKLL ETQPDPSGKGPSFNDLNNVLRIKKIDISQMQMLEDETNLSILDWGKLLSYLPNIGGPN QTSEHGLLSEFNLDSSMQISGGPSLSFSSIVDEVFETEKGTSATPFPSQNFSSFSSSP ASHLGSVPMNIHGVKAGTPSPKWEVGLQVSQLNNVAKVSSPATHYGSSLYPSSGLKGS LQSSSFGSLSSGTGRGTSAKKLSTSKSDQDLASLRSNHSVELGALDEDQLRLLNDTSK DALSASRSSRLLSPPRPTVPRVSAQIAKPNGPRSSSSANLTASVRFAGSSPLASPPVS QAAETPICHGTSHDVAKHDKNPRKRTVSDMLSLIPSLQGIEADAGIRKRKKTSDVAYT QQPSSQVLISTEMINKTEVYSYGNLIAEANKGNAPSCIYVSALLHVVRHSSLCIKHAR LTSQMEELDIPYVEEVGLRNASSNIWFRLPSARGDSWRHICLRLGRPGRMSWDVKIND QHFRDLWELQKGGNNTPWGSGVRIANTSDVDSHIRYDPDGVVLSYQSVEADSIKKLVA DIRRLSNARMFALGMRKLLGVRADEKPDEGSANSDVKASVGGKGAVDVADKLSEQMRR SFKIEAVGLLSLWFCFGSGVLARFVVEWESGKEGCTMHVSPDQLWPHTKFLEDFIDGA EVASLLDCIRLTAGPLHALAAATRPARASPAPGVPGASAAVSSMPKQSGYIPSQGLLP SSSTTNVNQAASGPAGNPVASGSASSLGNHGLHGAGMLVAPPGRGGPGIVPSSLLPID VSVVLRGPYWIRIIYRKRFAVDMRCFAGDQVWLQPATPPATPPAGGSSVGGSLPCPQF RPFIMEHVAQELNGLDSGFTSGQQTVGLANSNNPNLNSGPQLSANGNRVNLPTSAAMS RAANQVAGLNRVGNALPGSPNLAVVSSGLPIRRSPGSGVPAHVRGELNTAIIGLGDDG GYGGGWVPVVALKKVLRGILKYLGVLWLFAQLPDLLKEILGSILKENEGTLLNLDLEQ PALRFFVGGYVFAVSVHRVQLLLQVLSVKRFNQQQQQQQQQNNANAQEELTQSEICEI CDYFSRRVASEPYDASRVASFITLLTLPISVLREFLKLIAWKKGLAQTQGGDIAPAQK PRIELCLENHTGVNVDDSSESSSMTKSNIHYDRPHNSVDFALTVVLDPAHIPHINAAG GAAWLPYCISVRLRYSFGENPSVSFLGMEGSHGGRACWLRLDDWEKCKQRVARTVEVS GCTAGDAAQGRLRAVADHVQRALICAFKD" mobile_element complement(37801359..37801469) /note="source:CACAO_M_S_E16386_F9_scaffold_2 2050 2154" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(37805719..37811128) /locus_tag="TCM_026346" /note="dbxref CacaoGD:Thecc1EG026346" mRNA complement(join(37805719..37806528,37806941..37807018, 37807698..37807763,37808181..37808246,37808574..37808693, 37809858..37809968,37810596..37811128)) /locus_tag="TCM_026346" /product="Basic helix-loop-helix DNA-binding superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s05500.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004217t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s05500.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05184t00001" CDS complement(join(37806301..37806528,37806941..37807018, 37807698..37807763,37808181..37808246,37808574..37808693, 37809858..37809968,37810596..37810964)) /locus_tag="TCM_026346" /note="paralog of Thecc1EG004217t1" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein" /protein_id="EOY11073.1" /db_xref="Phytozome:POPTR_0005s05500.1" /db_xref="TAIR:AT4G02590.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GS74" /translation="MAGNQQEGLGDDFFEQILAVPPGYGGGAGGGGASEVGGATLPMV LQLGSSGGPAGGSGGDGGGGGFRGMGIGVGMGMMPLGLNLEHGFLRHEDGVVVDSNNN NSNNNNNNASCSAASAVSGISERDSMHMTSLFPPFGQMQTQQIRPSPPPPQPPPQLHQ QFHSQPTSGPVAAAPHPPAIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVP SCNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGAAGAVAQLVADVPLSSVEGDGIEG GTQPAWEKWSNDGTEQQVAKLMEEDIGAAMQFLQSKALCIMPISLASAIFRTHQPDAP TIVKPESSTPS" mobile_element 37810982..37811028 /note="source:scaffold_10_CACTA_0130 1123 1168" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(37811702..37811835) /note="source:scaffold_4_CACTA_0483 12606 12749" /mobile_element_type="transposon:TIR/CACTA" gene complement(37813447..37817048) /locus_tag="TCM_026347" /note="dbxref CacaoGD:Thecc1EG026347" mRNA complement(join(37813447..37813681,37816597..37817048)) /locus_tag="TCM_026347" /product="Bacterial sec-independent translocation protein mttA/Hcf106" /inference="alignment:exonerate- protein:2:TAIR:AT5G28750.1" /inference="similar to AA sequence:ricco:29598.m000466" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14952t1" CDS complement(join(37813553..37813681,37816597..37816929)) /locus_tag="TCM_026347" /note="dbxref ricco:29598.m000466" /codon_start=1 /product="Bacterial sec-independent translocation protein mttA/Hcf106" /protein_id="EOY11074.1" /db_xref="TAIR:AT5G28750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PB96" /translation="MEITSITLSLSRPLPPSLPFSSAHSNFMTCSNSISLLNKTKSQN KSVFVVGQPRRRTRAEPAKRGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGRSI GKTVKSFQQAAKEFESELKKSPESPTEPSEENPTAVIEENKQDVEVSKESV" gene 37817626..37819882 /locus_tag="TCM_026348" /note="dbxref CacaoGD:Thecc1EG026348" mRNA 37817626..37819882 /locus_tag="TCM_026348" /product="Mitochondrial editing factor 20" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021789001" /inference="similar to AA sequence:Phytozome:GSVIVT01021789001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1801t1" CDS 37817675..37819114 /locus_tag="TCM_026348" /codon_start=1 /product="Mitochondrial editing factor 20" /protein_id="EOY11075.1" /db_xref="Phytozome:GSVIVT01021789001" /db_xref="TAIR:AT3G18970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BP14" /translation="MHSLPRFSCLPLLNLKSPIPSHHIKQIHAQLIINGLKEPSFLAK LIENYCFSPSPQNTKYAQLVNKQFDTQSLFLFNTLLRCSQPKVSIITFANWVSKGHLV FDDFTFIFVLGACARSHSLSTLWLGRQIHVKALKFGVMSNLLVETTLIHFYAKNKDIL SARRVFDEMTERSSVTWNAIIKGYCSQKERAKECCREALVLFRDMLNDVSGVKPTDTT MVCVLSACSQLGELYSGACIHGFIEKTFFRPENDVFIGTGFVDMYAKCGCINSALCVF RLMRVKNVLTWTAMGTGLAVHGRGEEALELLDAMEGSGVKPNPVTFTSLFSACCHAGL VEQGLHLFHSMGSRFCLKPQIQHYGCIVDLLGRAGHLNEAYDFIIEMPMKPDAILWRS LLSACNVHGDVVMAEKVGKILLRLKPPNSYVDMATTSEDYVALSNVYASAGRWQQVEM VRKKMKLKRVETEPGGSSIQTISNHLDRL" gene complement(37819368..37824178) /locus_tag="TCM_026349" /note="dbxref CacaoGD:Thecc1EG026349" mRNA complement(join(37819368..37820594,37820856..37820981, 37821377..37821452,37821669..37821858,37821991..37822087, 37823597..37824178)) /locus_tag="TCM_026349" /product="Light-inducible protein CPRF-2, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s05470.1" /inference="similar to AA sequence:ricco:29598.m000468" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10770t1" CDS complement(join(37820196..37820594,37820856..37820981, 37821377..37821452,37821669..37821858,37821991..37822087, 37823597..37823950)) /locus_tag="TCM_026349" /note="dbxref ricco:29598.m000468" /codon_start=1 /product="Light-inducible protein CPRF-2, putative" /protein_id="EOY11076.1" /db_xref="TAIR:AT5G28770.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SZ77" /translation="MDRVFSVEEISDHFWSSSSAVSAADDDKKPGSKMNRSASEWAFQ QFLREEADRKGEDKKEEEEEAKEELKKKENGVMTSSNGGLENKDKNNIPADSEEYQAF LKTKLNLACAAVAMSRASFLKSQDSAARADSGSQASNSPQLGSKATSKGAGNKDGNAP VEIPSLPNGQKKSVAQVRPSTSGSSRELSEEDEVEGENETMENMDPADAKRVRRMLSN RESARRSRRRKQAHLTELETQVGQLRVENASLMKRLADISQKYNEAAVDNRVLKADVE TLRAKVKMAEETVKRITGLNPLLHGSPEISTMAMSSFDGSPSDTSTDAAVPVQDGPKH PLYRAAANNPIFAHDLRVSNALADISSAENIQPNSGGSTVPGNKIGWTASLQRVASLE HLQKRIRGGVSPCGPKSNREQ" mobile_element complement(37824325..37824508) /note="source:CACAO_PIF_E144_scaffold_10 1968 2168" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(37824467..37824515) /note="source:CACAO_on_SS_E135_scaffold_10 1841 1889" /mobile_element_type="transposon:TIR/Mutator" gene complement(37826928..37829302) /locus_tag="TCM_026350" /note="dbxref CacaoGD:Thecc1EG026350" mRNA complement(join(37826928..37826955,37827141..37827317, 37827734..37827816,37828642..37828723,37828808..37828872, 37829167..37829302)) /locus_tag="TCM_026350" /product="Vacuolar ATPase subunit F family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031574001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004220t2" /inference="similar to AA sequence:Phytozome:GSVIVT01031574001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc841t1" CDS complement(join(37827153..37827317,37827734..37827816, 37828642..37828723,37828808..37828870)) /locus_tag="TCM_026350" /note="paralog of Thecc1EG004220t2" /codon_start=1 /product="Vacuolar ATPase subunit F family protein" /protein_id="EOY11077.1" /db_xref="Phytozome:GSVIVT01031574001" /db_xref="TAIR:AT4G02620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZQX4" /translation="MAGRAQIPTCNSALIAMIADEDTVTGFLMAGVGNVDLRRKTNYL IVDSKTTVKAVEDAFKEFTTKDDIAIILISQYVANMIRFLVDSYNKPVPAILEIPSKD HPYDPAHDSVLSRVKYLFSAESVASGRR" mobile_element 37830085..37830168 /note="source:INTACT433_F212_scaffold_1-int 3054 3136" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 37830171..37830283 /note="source:CACAO_PIF_E119_scaffold_3 2143 2235" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(37831524..37831805) /note="source:scaffold_1_CACTA_0008 7121 7379" /mobile_element_type="transposon:TIR/CACTA" gene 37832297..37836614 /locus_tag="TCM_026351" /note="dbxref CacaoGD:Thecc1EG026351" mRNA join(37832297..37832454,37833370..37833780, 37833880..37833973,37834073..37834202,37834273..37834405, 37834892..37835099,37835320..37835814,37836299..37836614) /locus_tag="TCM_026351" /product="GDP-mannose 3,5-epimerase 1" /inference="alignment:exonerate- protein:2:ricco:29598.m000469" /inference="similar to AA sequence:ricco:29598.m000469" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10864t1" CDS join(37832306..37832454,37833370..37833780, 37833880..37833973,37834073..37834202,37834273..37834405, 37834892..37835099,37835320..37835475) /locus_tag="TCM_026351" /note="dbxref ricco:29598.m000469" /codon_start=1 /product="GDP-mannose 3,5-epimerase 1" /protein_id="EOY11078.1" /db_xref="TAIR:AT5G28840.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93VR3" /translation="MVALSLFIERRALQASQSIPIRLLSQVSTLSRSLHLSLLFKSSQ LLTRFRMGSADGTNYGAFTYEALEREPYWPSEKLRISITGAGGFIASHIARRLKSEGH YIIASDWKKNEHMTEDMFCHEFHLADLRVMDNCLKVTNGVDHVFNLAADMGGMGFIQS NHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAE PQDAYGLEKLATEELCKHYTKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAI TSTDKFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVL SFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMRLKDGLRITYFWIKEQIEKE KSQGIDLTIYGSSKVVGTQAPVQLGSLRAADGKE" gene complement(37836675..37840328) /locus_tag="TCM_026352" /note="dbxref CacaoGD:Thecc1EG026352" mRNA complement(join(37836675..37837643,37838004..37838185, 37839487..37839681,37839950..37840328)) /locus_tag="TCM_026352" /product="Calcium-binding EF hand family protein" /inference="alignment:exonerate- protein:2:ricco:29598.m000471" /inference="similar to AA sequence:ricco:29598.m000471" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g07986t00001" CDS complement(join(37837329..37837643,37838004..37838185, 37839487..37839681,37839950..37840247)) /locus_tag="TCM_026352" /note="dbxref ricco:29598.m000471" /codon_start=1 /product="Calcium-binding EF hand family protein" /protein_id="EOY11079.1" /db_xref="TAIR:AT5G28830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MZE2" /translation="MSEGGLTVLDGTHLRSLNLFLPELNGSVTGAQLLEIADSKASSS LFGLSLPQKVKASALSRVTAGAGDDDVTFRKKELAGEKASKVLSDYISAIADGLKDDP LVVSILDGNTLKLFLEDEDDYAMLAENLFTDLDIEDKGKIRKSEIRKALVQMGVEMGI PPFAEFPLLNDILKKHGAEGQQELGQAQFAELLQPILQETADALTEKHIVVIQNIKVV NGSDLRKLLADEKQFNDVIQRVLQEKKSGKDELGKTELIRSFLEKHGKDLGLPPVESN EAATLLYDAVFSEVESEESPAQVEDEFREYVKDVLKKFAEQLEANPIYCDLDN" gene 37842946..37844994 /locus_tag="TCM_026353" /note="dbxref CacaoGD:Thecc1EG026353" mRNA join(37842946..37843099,37843191..37843568, 37843890..37844994) /locus_tag="TCM_026353" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.11 coverage" CDS join(37843087..37843099,37843191..37843568, 37843890..37844473) /locus_tag="TCM_026353" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11080.1" /translation="MASHDSSVSKLSRSLIIDQDFIEQHLSNQQKKDPQILFASADVR GQQIALKSMVINVDGADEGTGAAVIDGLRMTIEDLPQKFFSMMYSCDGVFCFYGAEAI IVCNPSTREIQRWAYGVDSHFWKPLDWLCPEVSRRKLGEAPYSVSLSSAKRPVHVNGA IYWITSFRRHPLEAIVSFDLHTEKFKAIPHPSCLDNDFKRYEAALKPLRNSLCLAELT NANKRMNIWIFMKGCNSSPGLNDKMGTWEMLHSIDLEIREHDWPMRIPIAGHKNGMLS TNYYGYWVQLYNPKRRMFTNVLSHWRTFAPTAYFESLVPLSAKKKRVN" gene 37845346..37849359 /locus_tag="TCM_026354" /note="dbxref CacaoGD:Thecc1EG026354" mRNA join(37845346..37845861,37846562..37847247, 37848024..37848048,37848214..37849359) /locus_tag="TCM_026354" /product="F-box and associated interaction domains-containing protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026357t1" /inference="similar to AA sequence:frave:gene26444" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.60 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10743t1" CDS join(37845366..37845861,37846562..37847247, 37848024..37848048,37848214..37848797) /locus_tag="TCM_026354" /note="dbxref frave:gene26444; paralog of Thecc1EG026357t1" /codon_start=1 /product="F-box and associated interaction domains-containing protein" /protein_id="EOY11081.1" /db_xref="TAIR:AT1G12870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7M9A4" /translation="MAGRGRTSLLNEGNWPQDLLLSILATLPAKSLLRFRCVSKHWRS LIINPGFIEQHLENQQRKEYPQLIFASGTTTDIVLESVAIVDVEVDDKEGAKTRKGFK RRSLNICHLPPDGYCMSNSCDGILCFFGETNLFVYNPGTREFRILQMGKKRSTRGPSY SSDCFGQRFPTHQLVGFGRDQVTKECKIIRLFIPIGEQENHIHECEVFTLSSDAGASW RGLGVVAYFIRPAQQPVFVNGALHWILDIRHANPSEVIVSFDLHTEKFQAISHPSCCS EASDRHMALMGLLSLRSSLCLVQSDYRLQQNIWIMNQSNGVWEKLFAIDWGLMNYRTP LAFPIAELKDGSFFVSHFGENLQIYDPESQSFSEVLIQHERRVVSYAYSESLVPLYGE PLCHEWKITTLLDIVKLRVAWWVKSKWPGDNTVSDIATTHFWLLLQPQREVKSMVSWE CPPTSWLKFSTDGAARGCPGHLGIGGVLCDNKGAVKMTFSKKAGWGDVNLAEILAVRE PMILFSASSWANSAGIIIESDSKNVVLWMTLPEKTPWKLRQLIFQTVSLKDRVAGWKI KHTPRSGNTVADSLAKSGIDRAHDLLCVFP" gene 37852723..37854489 /locus_tag="TCM_026355" /note="dbxref CacaoGD:Thecc1EG026355" mRNA join(37852723..37853053,37853769..37854489) /locus_tag="TCM_026355" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026354t1" /note="quality class is strong, express is weak, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.14 coverage" CDS join(37852942..37853053,37853769..37854142) /locus_tag="TCM_026355" /note="paralog of Thecc1EG026354t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11082.1" /translation="MKLTNVFVYNPGTREFQILQRGKKRSSRGPSYSSDCFGQQFPTH QLVGFGRDQVTKECKIIRLFIPKEEQENHIHECEVFALSSDPEASWRGLGVVAYFIRP AQQPVLVNGPLHWILDVRHANPSEVIVSFDLHTENSKQYHTQVVAQKPQIVGILWGYR L" gene 37855323..37859293 /locus_tag="TCM_026356" /note="dbxref CacaoGD:Thecc1EG026356" mRNA join(37855323..37855646,37857264..37857531, 37857995..37859293) /locus_tag="TCM_026356" /product="F-box and associated interaction domains-containing protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026357t1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.26 coverage" CDS join(37855473..37855646,37857264..37857531, 37857995..37858695) /locus_tag="TCM_026356" /note="paralog of Thecc1EG026357t1" /codon_start=1 /product="F-box and associated interaction domains-containing protein" /protein_id="EOY11083.1" /translation="MQHYSSSIADELFFIEVNYCADFLVKMNVNGNEVFVEPTFSLFD AESTMVALEPGKDGDMVLESMAIVDVEVGDGEGTKTRKGLKRSSSNICHLQSANYLVS NSCNGIICLFGITNVFLYNPGTREFRIVKMQKKEFSPDNSSVDTFVRVFPLYQLVGFG RDQVTKECKIIRLFTPNEENPIHECEVFTLSSDAGASWKGLGEVAYFIRAAQLPVYLN GALHWILDERHANPSEVIVSFDLHTEKFQAISHTSCFSEVSDRSRLHHMELLSLRGSL CLVEGKYDWSSRQLNISIMNQSNGIGEKLFSINRGLMNYRFPLAFPIAELKDGTFLVL RHKKNLEIFDPESQSDSEVLIQHEKSVDYYAYSESLVPLYGVPLVN" mobile_element 37858710..37858738 /note="source:scaffold_5_CACTA_0599 7159 7187" /mobile_element_type="transposon:TIR/CACTA" gene 37859337..37861288 /locus_tag="TCM_026357" /note="dbxref CacaoGD:Thecc1EG026357" mRNA join(37859337..37859968,37860237..37861288) /locus_tag="TCM_026357" /product="F-box and associated interaction domains-containing protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026358t1" /inference="similar to AA sequence:frave:gene26444" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS join(37859473..37859968,37860237..37860937) /locus_tag="TCM_026357" /note="dbxref frave:gene26444; paralog of Thecc1EG026358t1" /codon_start=1 /product="F-box and associated interaction domains-containing protein" /protein_id="EOY11084.1" /db_xref="TAIR:AT1G12870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7KT23" /translation="MAGRGGTNLKNDYWPKDLLLSILATLPAKSLLRFKCVSMHWRSL IINPYFIEQHLEKQQKKDYPQLVFASRASKPDMVLESMAIVDVEVGDEEGTKVRKGFR RSSSSICHLPCAHCFLSNSCDGILCFFGITSVFVYNPGTREFRTVKMQKKGFSPVFSS SVDFFVRIFPKDFLVGFGRDQVTKECKIIRLFTPKEENHIHECEVFTLSSDAGASWRG LGEVAYFIRAAQLPVYLNGALHWILDIRHANPSEVIVSFDLHTEKFQAISHPSCYSEV SDRSQLKHMELLPLRSSLCLLEGKYYWPSRQLNIWIMNQSNGIWEKLFSINRGLTKNG IPLACPTAELKDGTFFVLRNWKNLQIFDPESQSDSEVLIQHEKYVDCYAYSESLVPLY GEPLVD" gene 37861337..37863827 /locus_tag="TCM_026358" /note="dbxref CacaoGD:Thecc1EG026358" mRNA join(37861337..37862093,37862233..37863827) /locus_tag="TCM_026358" /product="F-box and associated interaction domains-containing protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026357t1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS join(37861571..37862093,37862233..37863098) /locus_tag="TCM_026358" /note="paralog of Thecc1EG026357t1" /codon_start=1 /product="F-box and associated interaction domains-containing protein" /protein_id="EOY11085.1" /translation="MAGRSGTNLKNNYWPEDLLLLILATLPTKSLLRFKCVSVHWLSL IINPYFIEQHLEEQQKNDYPHLIFATRATGPVMGMVFESMHKVFKSMAIVDVEVGDEE GAKIRKGLKQSSSNICHRPCFRYFMSNSCDGIICLFGITNVFVYNPRTREFRIVKMQK KGFSPVFSSSVDFFVIAKQGMGRVKGQMAWFEQLKCSLFSLVSSSQETNNRAYSDIFF AVRIFSKDFLVGFGRDQVTKECKIIRLFTPKEENHIHECEVFTLSSDAGASWRGLGEV AYFIRAAQLPVYLNGALHWILDVRHANPSEVIVSFDLHIEKFQAISHPSCFSEVSDRR TLKRMGLLSLRSSLCRVEGKYKSPPTLLNIWIMNQSNGIWEKMFSINWGLTEYGIALP FRIAELKEGTFLVLRYGRNLEIFDPESQSDSEMLIQHENSVDYYAYSESLVPLYGKPL VELRCHANCCLG" gene complement(37864656..37866898) /locus_tag="TCM_026359" /note="dbxref CacaoGD:Thecc1EG026359" mRNA complement(join(37864656..37865253,37865356..37865641, 37865716..37866898)) /locus_tag="TCM_026359" /product="Ammonium transporter 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s03780.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004244t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s03780.1" /note="quality class is strong, express is weak, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.26 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2654t1" CDS complement(join(37864697..37865253,37865356..37865641, 37865716..37866303)) /locus_tag="TCM_026359" /note="paralog of Thecc1EG004244t1" /codon_start=1 /product="Ammonium transporter 2" /protein_id="EOY11086.1" /db_xref="Phytozome:POPTR_0013s03780.1" /db_xref="TAIR:AT2G38290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M6N7" /translation="MELPSNLLPDEASPEWMNKGDNAWQLTAATLVGLQSIPGLVILY GSMVKKKWAINSAFMAFYAFAMVLVCWVGWGFRMSFGDKLVFFLGKPAVALDEKFLLG RAFLGYFPTATMVFFQSVFAAITLVLIAGALLGRMNFRAWILFVPLWFTFSYTIAAFS IWCPEGWLAKLGVIDLAGGFVIHLSAGVAGFTAAFWVGPRAQKDRDSFPPNNIILMLA GAGLLWMGWSGFNGGATFAASTVSALAVLNTHVCTATSLLTWLLLDSFFFGKPSVLGA IQGMITGLVCITPAAGVVQCWAAILMGIISGSVPWYTMMVLHKKVKLLKLVDDPMAIF HTHAIAGGLGGILTGFFAVPKLCRLFYMVPDWEKYLGLAYGLQNGRTSAGFKQMGIQL AAMLFVIVLNIVTTSIICWFIGLIVPLRLSDEELEIGDDTVHGEQAFALWHDGERFVT SKHNKVYDTDDFSHVGSESIGEVQMV" gene 37869632..37870636 /locus_tag="TCM_026360" /note="dbxref CacaoGD:Thecc1EG026360" mRNA join(37869632..37869789,37869905..37870062, 37870164..37870244,37870350..37870636) /locus_tag="TCM_026360" /product="Calmodulin-like 11" /inference="alignment:exonerate-protein:2:frave:gene16557" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020731t1" /inference="similar to AA sequence:frave:gene16557" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc4574t1" CDS join(37869714..37869789,37869905..37870062, 37870164..37870244,37870350..37870484) /locus_tag="TCM_026360" /note="dbxref frave:gene16557; paralog of Thecc1EG020731t1" /codon_start=1 /product="Calmodulin-like 11" /protein_id="EOY11087.1" /db_xref="TAIR:AT3G22930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P62158" /translation="MGEVLTEEQIAEFQEAFFLFDKDGDGCITMEELAIAIKSLDENP TEEELQNMINEVDTDGNGTIEFGEFLNLMARKMKEAEAEEELKEAFRVFDKDQDGYIS PFELRQVMINLGEKLTDEEIEQMIREADLDGDGQVNYEEFVRMMLAA" mobile_element complement(37870513..37870606) /note="source:scaffold_4_CACTA_0483 2573 2659" /mobile_element_type="transposon:TIR/CACTA" mobile_element 37871472..37872154 /note="source:CACAO_Again_on_E230_scaffold_10 1 715" /mobile_element_type="transposon:TIR/hAT" mobile_element 37872256..37872956 /note="source:CACAO_M_S_E14401_F17_scaffold_2 794 1516" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(37872892..37872970) /note="source:CACAO_M_S_E89272_F5_scaffold_8 10926 10998" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(37872949..37873535) /note="source:CACAO_M_S_E64832_F14_scaffold_5 2824 3449" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(37873481..37873492) /note="source:CACAO_Again_on_E5_scaffold_1 5049 5131" /mobile_element_type="transposon:TIR/hAT" mobile_element 37873503..37873574 /note="source:CACAO_Again_on_E207_scaffold_9 1026 1097" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(37873575..37873626) /note="source:scaffold_6_CACTA_0713 8230 8348" /mobile_element_type="transposon:TIR/CACTA" mobile_element 37873581..37874165 /note="source:CACAO_Again_on_E81_scaffold_3 652 1209" /mobile_element_type="transposon:TIR/hAT" gene 37873647..37883164 /locus_tag="TCM_026361" /note="dbxref CacaoGD:Thecc1EG026361" mRNA join(37873647..37873942,37877585..37878480, 37879619..37883164) /locus_tag="TCM_026361" /product="Autoinhibited calcium ATPase" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026363t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s03760.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1892t2" mobile_element 37873664..37874168 /note="source:scaffold_5_CACTA_0599 96 591" /mobile_element_type="transposon:TIR/CACTA" CDS join(37878111..37878480,37879619..37882308) /locus_tag="TCM_026361" /note="paralog of Thecc1EG026363t1" /codon_start=1 /product="Autoinhibited calcium ATPase" /protein_id="EOY11088.1" /db_xref="Phytozome:POPTR_0013s03760.1" /db_xref="TAIR:AT3G63380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HKB8" /translation="MSLRSRKPSEFPSMLLQEDPPPPASKHYRRRWRVAVTAITVTRF LVGLTKKVVEKNAELLRSLSFVTIDIEGSGDELVPILDVDPQGLAKMVKEKSLQSLTD QYGGVKQVATLLQSDLKKGINGEEIDLVLRTKVFGANKYQKQPAKSFFSFVLEAVKDT IIIILLVCAVLSLAFGIKRHGPKEGWYDGGSIIVAVFLVVVVSAVSNYRQSKQFEELS HESSDIRVQVVRDGRHHPVSIFKLVVGDLVSLKIGDQIPADGLFVEGHSLKVDESSMT GESDHVEVNEKNPFLLSGTKVTDGYGYMLVTSVGMNTAWGEMMSSIRRDLNEETPLQA RLSKLTTYIGNIGLSVAILVLLVLLIRYFTGHTKDENGKSQYNGSKTKFDDVMDSVVG IVAAAVTIVVVAIPEGLPLAVTLTLAYSMKRMMRDNAMVRKLSACETMGSATIICTDK TGTLTLNEMKVTEFLLGKESIDNSPSSEIAANILQLLSEGVGLNTTGTVYKPNSTSVP EIYASPTEKAILSWAVIDLGLNIDEPKQSCELIHVEAFNSEKKRSGVLIRRSNDRVLA THWKGAAEMILAMCSYYYDKNGISNSMNDEERMQIGKVIESMADKSLRCIAFAHTNVI QENEQISTKLEETGLTWLGLVGLKDPCRPGVKEAVESCKKAGVNIKMITGDNMHTAKA IAFECGILDSHDNLHDEAVVEGVQFRNYSPEERKKKVENILVMARSSPFDKLLMVQSL KKNGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFTSVATVLR WGRCVYNNIQKFIQFQLTVNVAALVINFVAAVSSGEVPLTAVQLLWVNLIMDTLGALA LATEQPTNDLLKKRPVGRTEPLITRVMWRNLIAQALYQVAILLILQFKGKSIFGVAEK VKDTLIFNTFVLCQIFNEFNARNLEKKNIFKGIQRNKLFLAIIGITLVLQAVMVEFLK KFANTERLDWKQWVVCIGIAAVSWPIGWLVKCIPVDGQLPKQRASSS" mobile_element 37884799..37886211 /note="source:INTACT402_F76_scaffold_5-int 1 1413" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 37887703..37905478 /locus_tag="TCM_026362" /note="dbxref CacaoGD:Thecc1EG026362" mRNA join(37887703..37887796,37889020..37890966, 37903590..37905478) /locus_tag="TCM_026362" /product="Autoinhibited calcium ATPase" /inference="alignment:exonerate- protein:2:Phytozome:Sb04g005130.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026363t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s05420.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01893t00002; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc734t1_C2" gene 37889430..37892820 /locus_tag="TCM_026363" /note="dbxref CacaoGD:Thecc1EG026363" mRNA 37889430..37892820 /locus_tag="TCM_026363" /product="ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026364t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s03760.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10733t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc813t1" CDS 37889585..37892590 /locus_tag="TCM_026363" /note="paralog of Thecc1EG026364t1" /codon_start=1 /product="ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein" /protein_id="EOY11090.1" /db_xref="Phytozome:POPTR_0013s03760.1" /db_xref="TAIR:AT3G63380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HDU5" /translation="MSLRCRKPGEPAMPDADDTPVAKRQQRRWRTVFAAIYSARILVS LYKKVINDKQILRTLSYIAIDIHEHDSSDHHLPSLWVDQKTLTEMVREKNLENLRKLG GVKKIAVSLETDEKDGISGNEADLTHRMDVFGANRYQKPPIKSLLSFIFEAFKDTTII ILLVCAILSLGFGIKQHGVEDGWHDGGSIIFAVFLVVVISAVSNFKQNRQFEKLSNES SDIRVDVVRDGRRQFISVFEVVVGDVVCLKIGDQIPADGLFLDGHSLKVDESSMTGES DHVEINGNNNPFMLSGTKVTDGFGFMLVTSVGMNTAWGKMMSSINRDFDEETPLQARL NKLTSYIGKIGLTVAILVLAVLLIRYLTGNTKDDKGNKEYIRGKTKLDSTMNSVVNII SAAITIVVVAIPEGLPLAVTLTLAYSMKQMMADHAMVRKLSACETMGSATTICTDKTG TLTSNEMKVTEFWLGNECMKDSMSTEIAPNVHELLQQAIALNTTGTVYKPNSRSLPEI SGSPTEKAILSWAVLDLGMNVDNPKQDYDLIQVAAFNSAKKRSGVLIRRKNESATHTH WKGAAEMIVAMCSQYYDRGGMVKVMDDEERTEIGKIIQNMAAKSLRCIAFAHTKIPED NEQVLGESRLTLVGLVGLKDPCRPGVRRAVESCIDSGVNIKMITGDNVFTAKAIAIEC GILQPHEDVNEAVIEGIEFRNYSPEERMEKINKVRVMARSSPFDKLLMVQCLKQKGHV VAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFTSVMTVLRWGRCVY NNIQKFIQFQLTVNVAALVINFIGAISSGEVPLTAVQLLWVNLIMDTFGALALATERP TDDLMTKPPVGRSKPLISNIMWRNLIAQALYQVAVLLTLQFRGKSVFGVDERVKNTLI FNTFVFCQVFNEFNARKLEKKNIFKGLHKNKLFLGIIGITIILQVVMVEFLKRFANTQ RLNWGQWGSCIGLAALSWPIGWLVKWIPV" gene 37894623..37902581 /locus_tag="TCM_026364" /note="dbxref CacaoGD:Thecc1EG026364" mRNA join(37894623..37895220,37896558..37898929, 37899046..37899954,37902320..37902581) /locus_tag="TCM_026364" /product="ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026363t1" /inference="similar to AA sequence:ricco:30128.m008624" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete" CDS join(37896610..37898929,37899046..37899608) /locus_tag="TCM_026364" /note="dbxref ricco:30128.m008624; paralog of Thecc1EG026363t1" /codon_start=1 /product="ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein, putative" /protein_id="EOY11091.1" /db_xref="TAIR:AT3G63380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HDU5" /translation="MSLRCRKPGKPAVPDADDTPVAKHQLRRWRSVFAAIYSTRILVS LYKKVIKEKQILRTLTYIAIDICDSNSSDVHLPSLCVNQKTLTEMIREKNLDNLRKLG GVKQIAASLETDEKDGISGNEADLAHRVDVFGANRYQKPPIRSFLSFIFEAFKDTNVI IRSVCAILSLGFGIKQHGIEEGWYDGGSIIFTVFPVVIVSTVSNFMQNRQFEKHLKES SDKRVEVVRDGHRQFISVSEVVVGDVVFLKTGDQIPADGLFLDGHPLKVDESSMTGES DHVEINGSNNPFVLSGTKVSEGFGSMLVTSVGMNTACREIISSVNRDLYEETLLQARL NKLTSYIRKIVLAVAILVHAVLLIRYFTGNTKDDKGNKEYFQGKTKLDGMMNIVVDII SAAVTIVAVAIPDGWPRAVTLTLAYSMKQMMADHALVRKPSACETMGSATTICTDKTG TLTINEMKVTEFWLGNECMKDSISTEIAPNVHELLQQAIALNTTGTVCKPNSRSLPEI SGSPTEKAILSWAVLDLGMSVDNLKQDYDLIQVAAFNSEKKRSGVLIRRKNESATHTH WKGAAEMIVAMCSQYYDRSGTVKVINDEERSEIGKMIQNMAFKSLRCIAFAHKRIPED KEQVLGESRLTLLGLAGLKDPCRPGVRRAVESCIDAGVNIKMITGDNVFTAKAIAIEC GILNPHEDMNEAVIEGVQFRNYSPEERKEKINKVRVMARSSPFDKLLMVQCLKQNGHV VAVTGDGANDAPALTEADIGLSMGIQGTERKLRSLVINSITAASSGEVPLTAVHLLWV NLIMDTFGALALATERPTDDLLTKPPVSRPKPLISKIMWRNLIAQALYQVAVLLALQF MGKSIFDVDERVKNTLFSNTFVLCQVFNEFNARTIEKKNIFKGLHKNGLFLGITVMTI LVQVVLVEFLNRFADTQRLNWGQWGFCIGLAALSWPIGWLVKWIPV" CDS 37903611..37905212 /locus_tag="TCM_026362" /note="paralog of Thecc1EG026363t1" /codon_start=1 /product="Autoinhibited calcium ATPase" /protein_id="EOY11089.1" /db_xref="Phytozome:POPTR_0005s05420.1" /db_xref="TAIR:AT3G63380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HKB8" /translation="MKDSISTEIAPNVHELLQQAIALNTTGTVYKPNSRSLPEISGSP TEKAILSWAVLDLGMNVDNPKQDYDVIQVAAFNSEKKRSGVLIRRKNESATHTHWKGA AEMIVAMCSQYYDRSGTVKVMDDEERTEIGKIIQNMAAKSLRCIAFAHTKIPEDNEPV LGESRLTLVGLVGLKDPCRPGVRRAVESCIDAGVSIKMITGDNVFTAKAIAIECGILQ PHEDVNEAVIEGVEFRNYSPEERMEKINKVRVMARSSPFDKLLMVQCLKQKGHVVAVT GDGTNDAPALKEADIGLSMGIQGTEVTKESSDIVILDDNFTSVVTVLRWGRCVYNNIQ KFIQFQLTVNVAALVINFIAALSSGEVPLTAVQLLWVNLIMDTFGALALATERPTDDL MTNPPVGRSKPLISNIMWRNLIAQALYQVAVLLTLQFRGKSVFGVDERVKNTLIFNTF VFCQVFNEFNARKLEKKNIFKGLHKNKLFLGIVGITIILQVVMVEFLKRFANTQRLNW GQWGSCIGLAALSWPIGWLVKWIPV" gene complement(37905933..37908018) /locus_tag="TCM_026366" /note="dbxref CacaoGD:Thecc1EG026366" mRNA complement(join(37905933..37906689,37907800..37908018)) /locus_tag="TCM_026366" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.39 coverage" gene 37905962..37909212 /locus_tag="TCM_026367" /note="dbxref CacaoGD:Thecc1EG026367" mRNA join(37905962..37906058,37908085..37908433, 37908528..37909212) /locus_tag="TCM_026367" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is ortholog weak, intron is none, protein is complete" CDS join(37906050..37906058,37908085..37908433, 37908528..37908583) /locus_tag="TCM_026367" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11093.1" /translation="MRKPNWHRIGLTLSLSPTNKIHEMAYSSFSFSLDDQSCCIGLLW WISTCCGPIIVGGALKMDAFGALASPEEENLITMPPTLGRSKPLISTFMGKNLIGQAL SQLVVLLTLFNTFVLCQETELDPMGHLYIEIAALS" CDS complement(join(37906490..37906689,37907800..37907821)) /locus_tag="TCM_026366" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11092.1" /translation="MFAESRQVSFFFSEEIATYVYRICYIKNFLKVMLCAEQTVERLT VIIMRSLQLRSEVHSIDVETAGVYTRMMV" mobile_element 37917228..37917648 /note="source:CACAO_M_E58077_F15_scaffold_9 2021 2441" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 37918802..37918893 /note="source:INTACT296_F13_scaffold_9-int 13153 13245" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(37918822..37918898) /note="source:scaffold_4_CACTA_0490 3104 3179" /mobile_element_type="transposon:TIR/CACTA" mobile_element 37918857..37918927 /note="source:scaffold_4_CACTA_0490 3110 3178" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(37918901..37918971) /note="source:scaffold_4_CACTA_0490 3110 3178" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(37918916..37919004) /note="source:INTACT296_F13_scaffold_9-int 13154 13242" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(37919266..37927333) /locus_tag="TCM_026368" /note="dbxref CacaoGD:Thecc1EG026368" mRNA complement(join(37919266..37919337,37920682..37920872, 37923340..37924432,37925538..37925639,37925748..37925910, 37927177..37927333)) /locus_tag="TCM_026368" /product="Nucleotide binding protein 35" /inference="alignment:exonerate- protein:2:ricco:30190.m010987" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017079t1" /inference="similar to AA sequence:ricco:30190.m010987" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14959t1" CDS complement(join(37923507..37924432,37925538..37925639, 37925748..37925910,37927177..37927191)) /locus_tag="TCM_026368" /note="dbxref ricco:30190.m010987; paralog of Thecc1EG017079t1" /codon_start=1 /product="Nucleotide binding protein 35" /protein_id="EOY11094.1" /db_xref="TAIR:AT5G50960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H1Q2" /translation="MQNSQLKSSQRISAVKLTSANLEQSLRSLKTQFCCRLELLSSTK TAAMENGEIPENANEHCPGPNSETAGKSDACQGCPNQEVCATAPKGPDPDLVAIVERM ATVKHKILILSGKGGVGKSTFSAQLSFALAAKEFQVGLLDIDICGPSIPKMLGLEGQD IHQSNLGWSPVYVESNLGVMSIGFMLPNPDEAVIWRGPRKNGLIKQFLKDVYWGELDF LVVDAPPGTSDEHISIVQFLQATGIDGAIIVTTPQQVSLIDVRKEVNFCKKVGVPVLG VVENMSGLCQPLMDFRFLRMTETGEHTDVTEKVIEYMREKAPEMVDLIAASEVFDSSG GGAAKMCREMGVPFLGKVPLDPHLCKAAEEGKSCFVDQKCGVSAPALKHIIEKLMTNY WPEEMAVEQ" gene 37927413..37940525 /locus_tag="TCM_046808" /note="dbxref CacaoGD:Thecc1EG046808" mRNA join(37927413..37927540,37927807..37927974, 37928114..37928317,37928460..37928632,37928856..37928952, 37929055..37929208,37929304..37929522,37940170..37940525) /locus_tag="TCM_046808" /product="NAD(P)-linked oxidoreductase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g40680.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026371t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021809001" /note="quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01523t00002; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14978t1" CDS join(37927478..37927540,37927807..37927974, 37928114..37928317,37928460..37928632,37928856..37928952, 37929055..37929208,37929304..37929494) /locus_tag="TCM_046808" /note="paralog of Thecc1EG026371t1" /codon_start=1 /product="NAD(P)-linked oxidoreductase superfamily protein" /protein_id="EOY11095.1" /db_xref="Phytozome:GSVIVT01021809001" /db_xref="TAIR:AT1G60690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9TSS9" /translation="MAEKQQRIQIPRVKLGKQGLEVSKLGFGCLGLSGTYNDPFPDDV GISIIKHAFDRGITFFDTSDIYGPKTNEILVGKALKQLPREKVQLATKFGIAKWDATG VTVNGTPEYVRASVEASLKRLDVEYIDLYYQHRVDTTTPIEDTMGELKKLVEEGKIKY IGLSEASPETITRAHAVHPITAVQMEWSLWTREIEEEIVPLCRQLGIGIVPYSPLGHG FFGGRAVEESVPANSVLGILPRFQSENLERNKILYLKVKKLAEKHGCTPAQLALAWVL HQGDDVVPIPGTTKIKNLDSNIDSLRLKLTEEDLKEISDVIPINEVAGCRTLDSFFQV SWKFANTPPKENKNS" mobile_element 37929486..37929975 /note="source:INTACT190_F166_scaffold_7-int 7435 7906" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(37929976..37930015) /note="source:INTACT585_F12_scaffold_8-int 8536 8571" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 37931362..37933768 /locus_tag="TCM_026371" /note="dbxref CacaoGD:Thecc1EG026371" mRNA join(37931362..37931469,37931773..37931940, 37932080..37932283,37932426..37932598,37932823..37932919, 37933027..37933180,37933278..37933768) /locus_tag="TCM_026371" /product="NAD(P)-linked oxidoreductase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g40680.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046810t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021812001" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14977t1" CDS join(37931407..37931469,37931773..37931940, 37932080..37932283,37932426..37932598,37932823..37932919, 37933027..37933180,37933278..37933471) /locus_tag="TCM_026371" /note="paralog of Thecc1EG046810t1" /codon_start=1 /product="NAD(P)-linked oxidoreductase superfamily protein" /protein_id="EOY11096.1" /db_xref="Phytozome:GSVIVT01021812001" /db_xref="TAIR:AT1G60680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9TSS9" /translation="MAEEQQRFQIPRVKLGNQGLEVSKLGFGCMGLSGAYNDPLPDDV GISIIKHAFDRGITFFDTSDIYGPKTNEVLVGKGLKQLPREKVQLATKFGFAKMEATG VTVNGTPEYVRASVEASLKRLDVEYIDLYYQHRVDTTTPIEDTMGELKKLVEEGKIKY IGLSEASPETITRAHAVHPITAVQMEWSLWTRDIEEEIVPLCRQLGIGIVPYSPLGRG FFGGRAVEESVPANSFLRFFPRFQGENFDRNKILYLKVKKMAEKHGCTTAQLALAWVL HQGDDVVPIPGTTKTKNLDGNIDSLRVKLTEEDLQEICDVIPINEVGGARMPDGLSHL TWKFANTPPKDSKIST" gene <37935968..>37938032 /locus_tag="TCM_046809" /note="dbxref CacaoGD:Thecc1EG046809" mRNA join(<37935968..37936027,37936333..37936503, 37936702..37936905,37937049..37937221,37937413..37937486, 37937869..>37938032) /locus_tag="TCM_046809" /product="NAD(P)-linked oxidoreductase superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s05400.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046810t1" /note="quality class is strongpartial-expertchoice, express is weak, homology is paralog strong, intron is strong, protein is partial; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc10314t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10910t1" CDS join(<37935968..37936027,37936333..37936503, 37936702..37936905,37937049..37937221,37937413..37937486, 37937869..>37938032) /locus_tag="TCM_046809" /note="paralog of Thecc1EG046810t1" /codon_start=1 /product="NAD(P)-linked oxidoreductase superfamily protein, putative" /protein_id="EOY11097.1" /db_xref="TAIR:AT1G60750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9TSS9" /translation="VEEQQRTQIPRMKLGNQGLEVSKLGFGCAELSVVAYGDPLPDDV GISIIKHAFDRGITFFDTSDSYGPKTNEILVGKALKQLPREKVQLATKFGIAKRDATG VIVNGTPEYVRTSVEASLKRLDVEYIDLYYQHRVDTTTPIEDTMGELKKLVEEGKIKY IGLSEASPETIKRAHAAHPITAVQMEWSLWTRDIEEEIVPLCRQLGIGIVPYSPLGRG FFGGKAVDERTTKTKNLDGNIDSLRVKLTEEDLQEICDVIPINEVAGARMPDGLSHLT WKFANT" mobile_element 37940132..37940621 /note="source:INTACT190_F166_scaffold_7-int 7435 7906" /mobile_element_type="retrotransposon:LTR/Copia" gene 37942008..37944410 /locus_tag="TCM_046810" /note="dbxref CacaoGD:Thecc1EG046810" mRNA join(37942008..37942117,37942439..37942606, 37942746..37942949,37943093..37943265,37943457..37943553, 37943662..37943815,37943913..37944410) /locus_tag="TCM_046810" /product="NAD(P)-linked oxidoreductase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g40680.1.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026371t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021812001" /note="quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14979t1" CDS join(37942055..37942117,37942439..37942606, 37942746..37942949,37943093..37943265,37943457..37943553, 37943662..37943815,37943913..37944106) /locus_tag="TCM_046810" /note="paralog of Thecc1EG026371t1" /codon_start=1 /product="NAD(P)-linked oxidoreductase superfamily protein" /protein_id="EOY11098.1" /db_xref="Phytozome:GSVIVT01021812001" /db_xref="TAIR:AT1G60680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9TSS9" /translation="MAEEQQRIQIPGVKLGNQGLEVSKLGFGCAGLSGAYSDPLPDDV GITIIKHAFDRGITFFDTSDFYGPKTNEILVGKALKQLPREKVQLATKFGIAKIDATG VIVNGTPEYVRASVEASLKRLDVEYIDLYYQHRVDTSTPIEDTMGELKKLVEEGKIKY IGLSEASPETIKRAHAVHPITAVQMEWSLWTRDIEEGIVPLCRQLGIGIVPYSPLGHG FFGGKAVDESVPADSFMRLLPRFQGENFDRNKILYLKVKKLAEKHGCTTAQLALAWVL HQGDDVVPIPGTTKTKNLDGNIDSLRVKLTEEDLQEICDVIPMNEVAGALMPDGLSHL TWKFANTPPKDSKIST" gene 37945906..37948495 /locus_tag="TCM_026374" /note="dbxref CacaoGD:Thecc1EG026374" mRNA join(37945906..37946110,37946424..37946591, 37946788..37946991,37947136..37947308,37947501..37947590, 37947672..37947859,37947957..37948495) /locus_tag="TCM_026374" /product="NAD(P)-linked oxidoreductase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400011427" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026371t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021809001" /note="quality class is strong, express is medium, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.40 coverage" CDS join(37946048..37946110,37946424..37946591, 37946788..37946991,37947136..37947308,37947501..37947590, 37947672..37947859,37947957..37948150) /locus_tag="TCM_026374" /note="paralog of Thecc1EG026371t1" /codon_start=1 /product="NAD(P)-linked oxidoreductase superfamily protein" /protein_id="EOY11099.1" /db_xref="Phytozome:GSVIVT01021809001" /db_xref="TAIR:AT1G60690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9TSS9" /translation="MVEEQQRIQIPRMKLGNQGLDVSKLGFGCAGLSGAYNDPLPDDA GISIIKHAFDRGITFFDTSDIYGPETNEILVGKALKQLPREKVQLATKFGITKMDTTG VMVNGTPEYVRASVEASMKRLDVEYIDLYYQHRVDTTTPIEDTMGELKKLVEEGKIKY IGLSGASPETIKRAHVVHPITAVQMEWSLWTRDIEEEIVPICRQLRIGIVPYSPLGRG FFGGRAVEESVPANSLVDQLPTSTFKAIFPRFQGENLARNKILYLKVKKLAEKHGCTT AQLALAWVLHQGDDVAPIPGTTKIKNLDSNIDSLRVKLTEENLKEICDVIPINEVAGT LLPDSLSHLSWKFANTPSKESKIST" gene 37948997..37952307 /locus_tag="TCM_026375" /note="dbxref CacaoGD:Thecc1EG026375" mRNA join(37948997..37949171,37949834..37950001, 37950267..37950470,37950580..37950752,37950853..37950949, 37951180..37951333,37951833..37952307) /locus_tag="TCM_026375" /product="NAD(P)-linked oxidoreductase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021822001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026371t1" /inference="similar to AA sequence:ricco:30128.m008604" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc38t1" CDS join(37949109..37949171,37949834..37950001, 37950267..37950470,37950580..37950752,37950853..37950949, 37951180..37951333,37951833..37952026) /locus_tag="TCM_026375" /note="dbxref ricco:30128.m008604; paralog of Thecc1EG026371t1" /codon_start=1 /product="NAD(P)-linked oxidoreductase superfamily protein" /protein_id="EOY11100.1" /db_xref="TAIR:AT1G60690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9TSS9" /translation="MAQQENLFQIPRVKLGSQGLEVSKLGFGCMGLTGVYNSPLSEEE VISIIKDAFAKGITFFDTADAYAAHTNEVLVGKALKQLPREKIQVATKFGIVAMQATG MIVNGSPEYVRSCCEGSLKRLDVDYIDLYYQHRVDTSVPIEETMGELKKLVEEGKIKY IGLSECSPDTIRRAHAVHPITAIQMEWSLWTRDIEDEIVPLCRELGIGIVPYSPLGRG FFCGRAVVESLPAGTFLASHPRFRGENLDKNKNIYTRIEELAKKRQCSPAQLALAWVL QQGDDVVPIPGTTKIKNLDHNIGSLTVKLTAEDLKEISDAVPIDEVAGDRNYDSMRKA SWKFANTPPKDFGVSA" gene complement(37952714..37955126) /locus_tag="TCM_026376" /note="dbxref CacaoGD:Thecc1EG026376" mRNA complement(join(37952714..37953684,37954184..37955126)) /locus_tag="TCM_026376" /product="HXXXD-type acyl-transferase family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s05380.1" /inference="similar to AA sequence:Phytozome:POPTR_0005s05380.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.37 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10964t3" CDS complement(join(37952755..37953684,37954184..37954606)) /locus_tag="TCM_026376" /codon_start=1 /product="HXXXD-type acyl-transferase family protein, putative" /protein_id="EOY11101.1" /db_xref="Phytozome:POPTR_0005s05380.1" /db_xref="TAIR:AT4G29250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MZE7" /translation="MSEQSSRVNVHSKLTAVSSKPVEPGKTHLLTPLDQAMGQHSLHL VFYYEKNPFGSFDLDPIRVSLSETLSLYPTVTGRLTRGESGNWEVKCNDSGVRVLRAK VSVGIDEWLRYGNGMEERDLAAWEDMPENPNTWSPFRIQVTELEGGGVAIGLNCSHMN ADLTSLVLFFKTWTEAHRQQAIVYPPVFSSALHGRAVPVSDSKSAEHYVAKSFVEAPS VKMASTAFKFSNSVIKKCLSEIHVTCPDATPFDLLAALFWIPVARLNGSKHDHTHSIS ICIDFRRLLKEPLSYGYFGNALHFSVLSLGEKDLIPGELGHVAEAVHGHIAGMKEEEI LSVMDWLESRKGEGGKYAQPFRMYGPELTCVSMEHMINGDQSLMYATMFEDNVRPAHV ACHVGNVEGEGLIMVMPSPEGALARTVMVTLPEEEIAKLCEDEAILRLEPTMLLSGGL " gene 37956363..37963482 /locus_tag="TCM_026377" /note="dbxref CacaoGD:Thecc1EG026377" mRNA join(37956363..37956616,37956716..37956769, 37956841..37957050,37957154..37957252,37957713..37957799, 37958251..37958333,37958676..37958789,37959395..37959449, 37959546..37959632,37960459..37960514,37960635..37960694, 37960799..37960886,37961029..37961781,37961885..37961945, 37962237..37962336,37962534..37962668,37962757..37963482) /locus_tag="TCM_026377" /product="Peptide n-glycanase, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g43320.1" /inference="similar to AA sequence:Phytozome:GSVIVT01021825001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc257t18; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc257t18" mRNA join(37956527..37957252,37957713..37957799, 37958251..37958333,37958676..37958789,37959395..37959449, 37959546..37959632,37960459..37960514,37960635..37960694, 37960799..37960886,37961029..37961781,37961885..37961945, 37962237..37962336,37962534..37962668,37962757..37963136) /locus_tag="TCM_026377" /product="Peptide n-glycanase, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g43320.1" /inference="similar to AA sequence:Phytozome:GSVIVT01021825001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00242t00002; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc257t18" CDS join(37956539..37956616,37956716..37956769, 37956841..37957050,37957154..37957252,37957713..37957799, 37958251..37958333,37958676..37958789,37959395..37959449, 37959546..37959632,37960459..37960514,37960635..37960694, 37960799..37960886,37961029..37961781,37961885..37961945, 37962237..37962336,37962534..37962668,37962757..37962841) /locus_tag="TCM_026377" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Peptide n-glycanase, putative isoform 1" /protein_id="EOY11102.1" /db_xref="Phytozome:GSVIVT01021825001" /db_xref="TAIR:AT5G49570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9REQ2" /translation="MVAREFLVRHEDLTFAVDYDTDDGFEVFQFQLFSLTSIPPDEQK IVGEDDDRIVSDNSDLAAVSEKLRLVSIASEKEKEPEKQEETTSSGGAGAGNFHAGSS VTSDEELARMLQAEEEALLLQHYAAGQNSGPFEEKIRPYISQVLMYEDPVRQEAARKT VPVDNLEEKALVSLAKEGNLKLSKIEQDHAFLIQLLFWFKRSFSWVNAPPCDGCGNET TGQGMGNALPSEIQFGATRVELYRCNSCSRVTRFPRYNDPLKLVETRKGRCGEWANCF TLYCRAFGYESRLVLDFTDHVWTECYSEVLGRWMHLDPCEPIYDQPLLYEKGWDKKLN YVIAIAKDGVHDVTKRYTRKWHEVLSRRTIITESSLVSVLTSMRRECRRNYTSEILSV LEERDNIERETMERDLHSTDDASISLPGRQSGDKQWRIARSEHGTDSLSLSSCPVRIC RDEHVTRIYNAFCAILRKFVEDSLIVSKGVEVLKILRATIVDLKKLPYKKRRASLKSN SIVGTSLVHQLLPSFGELLNAISLKSELDANGSVSVCLAGDPVKTALALPVALHALDE LISDLSKCDNFSKDSLSFPLLRLNRICSGAVLASGEELPVGIATAAFDGTRMSKWEEP NGARGCSIMYKLSANMQELVAYELMSANDAPERDPMDWVVEGSNDGGSSWHVLDKQTS QVFNKRFQRKTYKIRSTGFSSNTFRFRFLAARDIQSTSRLQVGSIDLYARES" CDS join(37957250..37957252,37957713..37957799, 37958251..37958333,37958676..37958789,37959395..37959449, 37959546..37959632,37960459..37960514,37960635..37960694, 37960799..37960886,37961029..37961781,37961885..37961945, 37962237..37962336,37962534..37962668,37962757..37962841) /locus_tag="TCM_026377" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Peptide n-glycanase, putative isoform 2" /protein_id="EOY11103.1" /db_xref="Phytozome:GSVIVT01021825001" /db_xref="TAIR:AT5G49570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9REQ2" /translation="MYEDPVRQEAARKTVPVDNLEEKALVSLAKEGNLKLSKIEQDHA FLIQLLFWFKRSFSWVNAPPCDGCGNETTGQGMGNALPSEIQFGATRVELYRCNSCSR VTRFPRYNDPLKLVETRKGRCGEWANCFTLYCRAFGYESRLVLDFTDHVWTECYSEVL GRWMHLDPCEPIYDQPLLYEKGWDKKLNYVIAIAKDGVHDVTKRYTRKWHEVLSRRTI ITESSLVSVLTSMRRECRRNYTSEILSVLEERDNIERETMERDLHSTDDASISLPGRQ SGDKQWRIARSEHGTDSLSLSSCPVRICRDEHVTRIYNAFCAILRKFVEDSLIVSKGV EVLKILRATIVDLKKLPYKKRRASLKSNSIVGTSLVHQLLPSFGELLNAISLKSELDA NGSVSVCLAGDPVKTALALPVALHALDELISDLSKCDNFSKDSLSFPLLRLNRICSGA VLASGEELPVGIATAAFDGTRMSKWEEPNGARGCSIMYKLSANMQELVAYELMSANDA PERDPMDWVVEGSNDGGSSWHVLDKQTSQVFNKRFQRKTYKIRSTGFSSNTFRFRFLA ARDIQSTSRLQVGSIDLYARES" mobile_element 37959222..37959319 /note="source:CACAO_M_E69780_F2_scaffold_9 1556 1648" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(37963418..37966312) /locus_tag="TCM_026378" /note="dbxref CacaoGD:Thecc1EG026378" mRNA complement(join(37963418..37963644,37964686..37964763, 37964858..37964904,37965014..37965071,37965166..37965214, 37965411..37965534,37965833..37965919,37966214..37966312)) /locus_tag="TCM_026378" /product="PITH domain-containing protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021827001" /inference="similar to AA sequence:ricco:30128.m008606" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14971t2" CDS complement(join(37963596..37963644,37964686..37964763, 37964858..37964904,37965014..37965071,37965166..37965214, 37965411..37965534,37965833..37965919,37966214..37966255)) /locus_tag="TCM_026378" /note="dbxref ricco:30128.m008606" /codon_start=1 /product="PITH domain-containing protein" /protein_id="EOY11104.1" /db_xref="TAIR:AT3G04780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SQZ9" /translation="MSAVESATAIQRSQVDLLDFIDWSGVECLNQNSNHSIANALKQG YREDEGLNLESDADEQLLIYIPFTQVIKLHSIVIKGSEEEGPKTVKLFSNKEHMGFSN VNDFPSSDTAVLSPDNLKGKPTVLKYVKFQNVRSLTIFIEDNQSGSEITKVQKIALHG STVETTDMKGLKKIEEH" gene 37966974..37968447 /locus_tag="TCM_026379" /note="dbxref CacaoGD:Thecc1EG026379" mRNA 37966974..37968447 /locus_tag="TCM_026379" /product="Ribose 5-phosphate isomerase, type A protein" /inference="alignment:exonerate- protein:2:ricco:30128.m008607" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010816t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s05360.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14966t1" CDS 37966995..37967840 /locus_tag="TCM_026379" /note="paralog of Thecc1EG010816t1" /codon_start=1 /product="Ribose 5-phosphate isomerase, type A protein" /protein_id="EOY11105.1" /db_xref="Phytozome:POPTR_0005s05360.1" /db_xref="TAIR:AT3G04790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MZE9" /translation="MASLSLQLSSLHHTSTTPLILRSTPLNRRPPTQKPFSIRAQSAP VLSQDDLKKLAADKAVESVKSGMILGLGTGSTAAFVVDKLGQLLSTGELSDIIGIPTS KRTQEQAASLNIPLTTLNKHPHIDLAIDGADEVDPNLDLVKGRGGALLREKMVEAASS SFIVVADDSKLVSGLGGSGLAMPVEVVQFCWKYNLVRLEGLFKDLGCEAKLRLVGDGS EKPYVTDNGNYIVDLYFKNPIKDGFGAGKEISALEGVVEHGLFLGMATSVIIAGKTGV EIMTK" mobile_element 37969064..37970161 /note="source:CACAO_M_E29_F88_scaffold_1 2403 3497" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(37969834..37970212) /note="source:CACAO_Again_on_E205_scaffold_9 1 378" /mobile_element_type="transposon:TIR/hAT" mobile_element 37970190..37970221 /note="source:CACAO_M_E29_F88_scaffold_1 3475 3506" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(37971364..37973186) /locus_tag="TCM_026380" /note="dbxref CacaoGD:Thecc1EG026380" mRNA complement(join(37971364..37971712,37972179..37972253, 37972353..37972478,37972586..37972666,37972758..37972916, 37973030..37973186)) /locus_tag="TCM_026380" /product="Slit protein C-product, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021829001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020689t1" /inference="similar to AA sequence:Phytozome:Glyma10g30340.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g15058t00001" CDS complement(join(37971636..37971712,37972179..37972253, 37972353..37972478,37972586..37972666,37972758..37972916, 37973030..37973135)) /locus_tag="TCM_026380" /note="paralog of Thecc1EG020689t1" /codon_start=1 /product="Slit protein C-product, putative" /protein_id="EOY11106.1" /db_xref="Phytozome:Glyma10g30340.1" /db_xref="TAIR:AT4G14746.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TUL5" /translation="MASYKIFAFTALLLVLFPIAAKGDGDLSPALAPFYDRLCDEVEC GKGTCKADISYRLNYICECDAGWKRTRDDDDNDDVRFLPCVIPNCTLDYSCQPAPPPV PEKEVPHNSSFFDPCYWTYCGEGTCNKTATYKHVCECRPGYSNLLNKTYFPCYSQCTL GSDCSRLGITVADQTSTPDGGKAYTFLPGKLHWVAVLMMSMAMVLWK" gene 37974742..37975792 /locus_tag="TCM_026381" /note="dbxref CacaoGD:Thecc1EG026381" mRNA join(37974742..37974981,37975519..37975792) /locus_tag="TCM_026381" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc5333t1" CDS join(37974877..37974981,37975519..37975764) /locus_tag="TCM_026381" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11107.1" /translation="MKGMMLYLFLVRGLVFSNSISLCLHTGRTNQDVTKPSEKQSVTL ERPMPDPHSNIVVVSSMAHDGDLGNDNDGGQQWLWRRTASSLLRKGKGERQTTKIEKN GKMMKEKLFIGLRL" mobile_element 37975111..37975378 /note="source:scaffold_5_CACTA_0614 3227 3496" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(37975810..37976509) /note="source:CACAO_Mariner_E36_scaffold_2 1753 2459" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 37977232..37977302 /note="source:CACAO_Again_on_E207_scaffold_9 333 405" /mobile_element_type="transposon:TIR/hAT" gene complement(37977384..37978449) /locus_tag="TCM_026382" /note="dbxref CacaoGD:Thecc1EG026382" mRNA complement(join(37977384..37977733,37977814..37977958, 37978093..37978449)) /locus_tag="TCM_026382" /product="Auxin-induced 5NG4-like protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006436t1" /inference="similar to AA sequence:ricco:29428.m000325" /note="quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Newbler:10:TSA:cgbaB_g14553t00001" CDS complement(join(37977549..37977733,37977814..37977958, 37978093..37978233)) /locus_tag="TCM_026382" /note="dbxref ricco:29428.m000325; paralog of Thecc1EG006436t1" /codon_start=1 /product="Auxin-induced 5NG4-like protein" /protein_id="EOY11108.1" /translation="MFFTFYKGVEINIWSTNENLLQHHQLATSRRPWRRSSNDPGKFI LGVVKISVRFPYLNSSAALTCIMGSIQSAVVALCTERNWSQWKLSAFAGIIGSILGGA LIVCGFDVVLWGKAKEMKQNTQLIPTAEGREEWRTWKSQKQVPLIAFSLQQNVF" mobile_element complement(37979168..37979222) /note="source:scaffold_6_CACTA_0709 2596 2650" /mobile_element_type="transposon:TIR/CACTA" gene 37980304..37984180 /locus_tag="TCM_026383" /note="dbxref CacaoGD:Thecc1EG026383" mRNA join(37980304..37981294,37981935..37984180) /locus_tag="TCM_026383" /product="Duplicated homeodomain-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30128.m008610" /inference="similar to AA sequence:ricco:30128.m008610" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04843t00001" CDS join(37980831..37981294,37981935..37983453) /locus_tag="TCM_026383" /note="dbxref ricco:30128.m008610" /codon_start=1 /product="Duplicated homeodomain-like superfamily protein, putative" /protein_id="EOY11109.1" /db_xref="TAIR:AT5G28300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5E1" /translation="MFDGVPDQFHQFIASSAAAAAAAAVAAARTTTLPLPLSFPPLHL ANSSNGFTSFDTLYTSNSHNQVPPQLQQQQPHFLHPLHPQHQTQKNEEKEENTGLVRM NMEIERERSMPESIDNHHHHHHPWSNDEVLALLRIRSSIENWFPEFTWEHVSRKLAEL GFKRSAEKCKEKFEEESRYFNSINCSKNYRLFSELEELCQGENPPPPHHNQQVVGATE KNKNVEKSREDEDNMGQNLEDDSRNIDEYQTTAGNNAPEDNERVVENKADNKNSSNRK RKRQKKFEMIKGFCEDIVNKLMNQQEEMHNKLLEDMVKRDEEKVAREEAWKKQELDRI NQELELRAKEQAIAGDRQATIIKFLSKFASTGSSKCFRRSNEALFKVPNDSNPPSTSS SLVPAQNPNPIVNAQSQGDQVSSTTLSTMVLGHQNSGSCPTDNNQIKATSMTENQAPE NPNPKTLTSSALALAPKNPNPVNAQSNPSPPTSSVTVNKAPLTPTSNDKEDLGKRWPR DEVLALINLRCSLYNNGDHDKEGAAIKAPLWERISQGMSELGYKRSAKRCKEKWENIN KYFRKTKDVNKKRSLDSRTCPYFHQLSTLYNQGTLIAPSEGLENRPALPENHSAALPE SGNDNSSQRGPAKDSTVHFSEGETNMVQVPAFEFEF" mobile_element complement(37989209..37989235) /note="source:CACAO_M_S_E31635_F14_scaffold_3 3233 3306" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(37989236..37989327) /note="source:scaffold_6_CACTA_0712 1393 1484" /mobile_element_type="transposon:TIR/CACTA" mobile_element 37989257..37989347 /note="source:CACAO_Again_on_E207_scaffold_9 1026 1112" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(37989348..37989360) /note="source:CACAO_M_S_E31635_F14_scaffold_3 3191 3232" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 37992234..37999505 /locus_tag="TCM_026384" /note="dbxref CacaoGD:Thecc1EG026384" mRNA join(37992234..37992477,37993621..37993737, 37993881..37993947,37994355..37994420,37994607..37994653, 37994769..37994814,37994982..37995062,37995153..37995195, 37995280..37995329,37995419..37995500,37995613..37995662, 37996375..37996448,37996747..37996798,37997428..37997874, 37998027..37999505) /locus_tag="TCM_026384" /product="NIMA-related serine/threonine kinase 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30128.m008612" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004295t1" /inference="similar to AA sequence:ricco:30128.m008612" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10847t5" CDS join(37993652..37993737,37993881..37993947, 37994355..37994420,37994607..37994653,37994769..37994814, 37994982..37995062,37995153..37995195,37995280..37995329, 37995419..37995500,37995613..37995662,37996375..37996448, 37996747..37996798,37997428..37997874,37998027..37998698) /locus_tag="TCM_026384" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30128.m008612; paralog of Thecc1EG004295t1" /codon_start=1 /product="NIMA-related serine/threonine kinase 1 isoform 1" /protein_id="EOY11110.1" /db_xref="TAIR:AT1G54510.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SLI2" /translation="MEQYEILEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTDRS RRSAHQEMELISKIRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKANGMLFS EEKLCKWLVQLLMALDYLHLNHILHRDVKCSNIFLTKDQDIRLGDFGLAKILTSDDLA SSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTSLKPAFKAFDMQALINKINKS IVAPLPTKYSGAFRGLIKSMLRKNPELRPSAEELLRHPHLQPYVLKVHLKINNPRRNT LPAHWPAANVKKTRFSDPVDVHFSAYRERRRSFTNDRTLNPSISGAEQDSVCSTKGIH DDAPGYLNERFEDLSIDSSHEGTVICKPITSKVSSITKTPRRSLTKASATPKRRTEPL KNRDSFPVSRTPIKKSLPTTRRASLPLLTRAKVRESPPISNAGILHCIQSPDVSVNAP RIDKIAEFPLASYENAFFPIHKTSSISARGSSGSPQFVDRSITKDKCTVQICDRAPIK PHFTDAWQGIQRSMFQVDGEDGTDSSDQNATAGASSRTSSDMQRRKFDPSSYQQRAEA LEGLLEFSARLLQQERYDELGVLLKPFGPGKVSPRETAIWLTKSFKENTAKQED" mRNA join(37994789..37994814,37994982..37995062, 37995153..37995195,37995280..37995329,37995419..37995500, 37995613..37995662,37996163..37996248,37996375..37996448, 37996747..37996798,37997428..37997874,37998027..37999003) /locus_tag="TCM_026384" /product="NIMA-related serine/threonine kinase 1 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30128.m008612" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004295t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s05320.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc770t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10847t5" CDS join(37996378..37996448,37996747..37996798, 37997428..37997874,37998027..37998698) /locus_tag="TCM_026384" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG004295t1" /codon_start=1 /product="NIMA-related serine/threonine kinase 1 isoform 2" /protein_id="EOY11111.1" /db_xref="Phytozome:POPTR_0005s05320.1" /db_xref="TAIR:AT1G54510.3" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C5B1" /translation="MQALINKINKSIVAPLPTKYSGAFRGLIKSMLRKNPELRPSAEE LLRHPHLQPYVLKVHLKINNPRRNTLPAHWPAANVKKTRFSDPVDVHFSAYRERRRSF TNDRTLNPSISGAEQDSVCSTKGIHDDAPGYLNERFEDLSIDSSHEGTVICKPITSKV SSITKTPRRSLTKASATPKRRTEPLKNRDSFPVSRTPIKKSLPTTRRASLPLLTRAKV RESPPISNAGILHCIQSPDVSVNAPRIDKIAEFPLASYENAFFPIHKTSSISARGSSG SPQFVDRSITKDKCTVQICDRAPIKPHFTDAWQGIQRSMFQVDGEDGTDSSDQNATAG ASSRTSSDMQRRKFDPSSYQQRAEALEGLLEFSARLLQQERYDELGVLLKPFGPGKVS PRETAIWLTKSFKENTAKQED" gene 37999762..38002066 /locus_tag="TCM_026385" /note="dbxref CacaoGD:Thecc1EG026385" mRNA join(37999762..38000570,38000684..38000923, 38001147..38002066) /locus_tag="TCM_026385" /product="IQ-domain 19, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s03650.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s03650.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.27 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc8041t1" CDS join(38000166..38000570,38000684..38000923, 38001147..38001827) /locus_tag="TCM_026385" /codon_start=1 /product="IQ-domain 19, putative" /protein_id="EOY11112.1" /db_xref="Phytozome:POPTR_0013s03650.1" /db_xref="TAIR:AT4G14750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5D9" /translation="MGKASRWLVNFLLGRKEDKGKRKNISISFEEGRVTTPSATPPAT PFKRRWSFGKLASKERAHKSSRSLDSMTATPLVKQAVLGLEKRHDNTRVLAMAMTSAT KRKTKATSAASLISKAVEDAAATRIQAAFRSYLARKALHALRGLVKLQALVRGHLVRK QTTATLRRMHALMAIQVRARFQRIQMAEEPRPAVKSRSSRYGRFPQEMGFKRAQREAV DINLYEKCGIVKSQNGFMNHSQIERIEHGITTYYSGELSISKREQKYEEFSFTTHNSP RHSPPMSKPTPGRSSFSSHEYPYMPNYLTNTESSRAKVRSQSEPKQRPAWNSKAKGKK TTSAEEMDDNIQQHYSSSQSKGVADENQEPWFVTLYRSTRTPKDNEGDTSVPTSYSEY RKSLVTNEVSQVNFSAVESSSVRFLGFSLKLHSLTHFWFTYLQPHATLF" gene complement(38001967..38009170) /locus_tag="TCM_026386" /note="dbxref CacaoGD:Thecc1EG026386" mRNA complement(join(38001967..38003041,38003161..38003512, 38003606..38003674,38003779..38003816,38004095..38004155, 38004266..38004333,38004635..38004810,38004975..38005039, 38005615..38005688,38005828..38005931,38006070..38006172, 38006277..38006364,38006484..38006546,38006631..38006710, 38007313..38007369,38007450..38007522,38007725..38007936, 38008073..38008270,38008370..38008448,38008821..38009117)) /locus_tag="TCM_026386" /product="Pseudouridine synthase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021833001" /inference="similar to AA sequence:Phytozome:GSVIVT01021833001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc824t9; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10806t2" mRNA complement(join(38002213..38003041,38003161..38003512, 38003606..38003674,38003779..38003816,38004095..38004155, 38004266..38004333,38004635..38004810,38004975..38005039, 38005615..38005688,38005828..38005911,38005996..38006172, 38006277..38006364,38006484..38006546,38006631..38006710, 38007313..38007369,38007450..38007522,38007725..38007936, 38008073..38008306,38008367..38008448,38008821..38009170)) /locus_tag="TCM_026386" /product="Pseudouridine synthase family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021833001" /inference="similar to AA sequence:Phytozome:GSVIVT01021833001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10806t2" mRNA complement(join(38002435..38003041,38003161..38003512, 38003606..38003674,38003779..38003816,38004095..38004155, 38004266..38004333,38004635..38004810,38004975..38005036, 38006069..38006172,38006277..38006364,38006484..38006546, 38006631..38006710,38007313..38007369,38007450..38007522, 38007725..38007936,38008073..38008270,38008370..38008448, 38008821..38009117)) /locus_tag="TCM_026386" /product="Pseudouridine synthase family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021833001" /inference="similar to AA sequence:Phytozome:GSVIVT01021833001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc825t8; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10806t2" CDS complement(join(38003012..38003041,38003161..38003512, 38003606..38003674,38003779..38003816,38004095..38004155, 38004266..38004333,38004635..38004810,38004975..38005039, 38005615..38005688,38005828..38005931,38006070..38006172, 38006277..38006364,38006484..38006546,38006631..38006710, 38007313..38007369,38007450..38007522,38007725..38007936, 38008073..38008270,38008370..38008448,38008821..38009029)) /locus_tag="TCM_026386" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Pseudouridine synthase family protein isoform 2" /protein_id="EOY11114.1" /db_xref="Phytozome:GSVIVT01021833001" /db_xref="TAIR:AT3G04820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5XVC2" /translation="MWRYGVSILKPYHYFHCKSCPADSKSNLTKTPVIKSSNSLTLMT TITESDVGILCFISHLPGFRGILKQRYSDFIVNEVDTEGNVVHLTSLDAPPEAVQEGE TKTPDQLNKCYASEIIKFRSLAGDTDADRLEAFINQITSGSEEDICPIVLSPDSDKSH RTAMHNFFKENLRFLVTDTVDGPDSSSKCIRVRLNSGNNNKGRNSKKRKERGDKPYDS RGSSHWPEHLGKFLRFHLYKENKDTQEALGLIGKMLGIQPRSFGFAGTKDKRSVSTQR VTVFKQHASRLAALNERLIGIKVGDFCYVKDDFLLGQLLGNRFTIILRGIVADSEETI KASVESLGRHGFINYFGLQRFGSGSIPTHRIGATLLRGEWQAAASTILDPREGERDFV SKAREYYKETGDIEGTLRQLPRHLVAERAMLQCLKKCPGNYLQALKAIPRTLRMMYVH SYQSYLWNHAASMRVEKYGSNEVVLGDLVYCKGNDAEKVKVVPSEHEDNNFEDAYDCS QLDEISGTDLPEGKNNLVKAITAADISTGNYTIEDVVLPMPGSRIIYPVNDIANVYHD MAKKDGISLTESVHNIKEFSITSMTGSYRRVFQKPIDFEWELLSYTDGSIALSETDLD KIAKTKPVNLVKEEKPTDGTEGQDSSDHMEHIESFEDDKKFSTGNVEVEGSREAEPPQ IHSLPESNSLGTQKALKLAFTLPASCYATMAIRELLKTSTSVAFHKTLNQ" CDS complement(join(38003012..38003041,38003161..38003512, 38003606..38003674,38003779..38003816,38004095..38004155, 38004266..38004333,38004635..38004810,38004975..38005036, 38006069..38006172,38006277..38006364,38006484..38006546, 38006631..38006710,38007313..38007369,38007450..38007522, 38007725..38007936,38008073..38008270,38008370..38008448, 38008821..38009029)) /locus_tag="TCM_026386" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Pseudouridine synthase family protein isoform 3" /protein_id="EOY11115.1" /db_xref="Phytozome:GSVIVT01021833001" /db_xref="TAIR:AT3G04820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5XVC2" /translation="MWRYGVSILKPYHYFHCKSCPADSKSNLTKTPVIKSSNSLTLMT TITESDVGILCFISHLPGFRGILKQRYSDFIVNEVDTEGNVVHLTSLDAPPEAVQEGE TKTPDQLNKCYASEIIKFRSLAGDTDADRLEAFINQITSGSEEDICPIVLSPDSDKSH RTAMHNFFKENLRFLVTDTVDGPDSSSKCIRVRLNSGNNNKGRNSKKRKERGDKPYDS RGSSHWPEHLGKFLRFHLYKENKDTQEALGLIGKMLGIQPRSFGFAGTKDKRSVSTQR VTVFKQHASRLAALNERLIGIKVGDFCYVKDDFLLGQLLGNRFTIILRGIVADSEETI KASVESLGRHGFINYFGLQRFGSGSIPTHRIGATLLRGEWQAAASTILDPREGDVHSY QSYLWNHAASMRVEKYGSNEVVLGDLVYCKGNDAEKVKVVPSEHEDNNFEDAYDCSQL DEISGTDLPEGKNNLVKAITAADISTGNYTIEDVVLPMPGSRIIYPVNDIANVYHDMA KKDGISLTESVHNIKEFSITSMTGSYRRVFQKPIDFEWELLSYTDGSIALSETDLDKI AKTKPVNLVKEEKPTDGTEGQDSSDHMEHIESFEDDKKFSTGNVEVEGSREAEPPQIH SLPESNSLGTQKALKLAFTLPASCYATMAIRELLKTSTSVAFHKTLNQ" CDS complement(join(38003012..38003041,38003161..38003512, 38003606..38003674,38003779..38003816,38004095..38004155, 38004266..38004333,38004635..38004810,38004975..38005039, 38005615..38005688,38005828..38005911,38005996..38006172, 38006277..38006364,38006484..38006546,38006631..38006710, 38007313..38007369,38007450..38007522,38007725..38007936, 38008073..38008306,38008367..38008448,38008821..38009029)) /locus_tag="TCM_026386" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Pseudouridine synthase family protein, putative isoform 1" /protein_id="EOY11113.1" /db_xref="Phytozome:GSVIVT01021833001" /db_xref="TAIR:AT3G04820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5XVC2" /translation="MWRYGVSILKPYHYFHCKSCPADSKSNLTKTPVIKSSNSLTLMT TITESDVGILCFISHLPGFRGILKQRYSDFIVNEVDTEGNVVHLTSLDAPPEVMIDVF SLNKFTQAVQEGETKTPDQLNKCYASEIIKFRSLAGDTDADRLEAFINQITSGSEEDI CPIVLSPDSDKSHRTAMHNFFKENLRFLVTDTVDGPDSSSKCIRVRLNSGNNNKGRNS KKRKERGDKPYDSRGSSHWPEHLGKFLRFHLYKENKDTQEALGLIGKMLGIQPRSFGF AGTKDKRSVSTQRVTVFKQHASRLAALNERLIGIKVGDFCYVKDDFLLGQLLGNRFTI ILRGIVADSEETIKASVESLGRHGFINYFGLQRFGSGSIPTHRIGATLLRGEWQAAAS TILDPREGDILSLTFFFPFLLGKALFRCLTTQRAREYYKETGDIEGTLRQLPRHLVAE RAMLQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVEKYGSNEVVLGD LVYCKGNDAEKVKVVPSEHEDNNFEDAYDCSQLDEISGTDLPEGKNNLVKAITAADIS TGNYTIEDVVLPMPGSRIIYPVNDIANVYHDMAKKDGISLTESVHNIKEFSITSMTGS YRRVFQKPIDFEWELLSYTDGSIALSETDLDKIAKTKPVNLVKEEKPTDGTEGQDSSD HMEHIESFEDDKKFSTGNVEVEGSREAEPPQIHSLPESNSLGTQKALKLAFTLPASCY ATMAIRELLKTSTSVAFHKTLNQ" gene 38009301..38013593 /locus_tag="TCM_026387" /note="dbxref CacaoGD:Thecc1EG026387" mRNA join(38009301..38009568,38010331..38010395, 38010883..38010931,38011237..38011331,38011525..38011610, 38011736..38011795,38011898..38011979,38012454..38012567, 38012744..38013593) /locus_tag="TCM_026387" /product="Prenylyltransferase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021835001" /inference="similar to AA sequence:Phytozome:GSVIVT01021835001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14975t1" CDS join(38009382..38009568,38010331..38010395, 38010883..38010931,38011237..38011331,38011525..38011610, 38011736..38011795,38011898..38011979,38012454..38012567, 38012744..38012908) /locus_tag="TCM_026387" /codon_start=1 /product="Prenylyltransferase superfamily protein" /protein_id="EOY11116.1" /db_xref="Phytozome:GSVIVT01021835001" /db_xref="TAIR:AT3G04830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MZF5" /translation="MVSKTEETQLNRLENQVDNGGGGAWEYLCLVRKLKVRRSEKVLK HGLSILNDPKKRSALGPEEWTLYEQVAIAAMDCQCLDVAKDCIKVLQKKFPESKRVGR LEGMLLEAKGSWAEAEKAYSSLLEDNPLDQVIQKRRVAMAKAQGNISGAIECLNKYLE IFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGLEN LQTAKKYYASTIDLTGGKNTRALLGICLCTSAIAQLSKGRNKEDKESPELQSLAATAL EKDYKQRASDKLGLLTSALRSLKI" gene 38013724..38015786 /locus_tag="TCM_026388" /note="dbxref CacaoGD:Thecc1EG026388" mRNA join(38013724..38013812,38013903..38013950, 38014082..38014187,38014627..38014764,38014870..38015055, 38015143..38015343,38015469..38015786) /locus_tag="TCM_026388" /product="Ribosomal protein S3Ae" /inference="alignment:exonerate- protein:2:ricco:30128.m008616" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020680t1" /inference="similar to AA sequence:ricco:30128.m008616" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaL_g09862t00001" CDS join(38013802..38013812,38013903..38013950, 38014082..38014187,38014627..38014764,38014870..38015055, 38015143..38015343,38015469..38015564) /locus_tag="TCM_026388" /note="dbxref ricco:30128.m008616; paralog of Thecc1EG020680t1" /codon_start=1 /product="Ribosomal protein S3Ae" /protein_id="EOY11117.1" /db_xref="TAIR:AT4G34670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P61247" /translation="MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFNERNIG KTLVTRTQGTKIASEGLKHRVFEVSLADLQKDEDQAYRKIRLRAEDVQGRNVLTNFWG MDFTTDKLRSLVRKWQTLIESHVDVKTTDNYSLRLFCIAFTKRRANQVKRTCYAQSSQ IRQIRRKMREIMVNQASSCDLKELVAKFIPEVIGREIEKATSSIYPLQNVFIRKVKIL KAPKFDLGKLMEVHGDYSEDVGVKLERPADETTAEGETEVVGA" gene complement(38016260..38022709) /locus_tag="TCM_026389" /note="dbxref CacaoGD:Thecc1EG026389" mRNA complement(join(38016260..38017344,38017551..38017792, 38017883..38018021,38018208..38018274,38018353..38018448, 38018821..38019001,38019955..38020029,38020111..38020261, 38020352..38020439,38020731..38021481,38021568..38021731, 38022500..38022709)) /locus_tag="TCM_026389" /product="Tesmin/TSO1-like CXC domain-containing protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021837001.2" /inference="similar to AA sequence:ricco:30128.m008617" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10829t3" mRNA complement(join(38016260..38017792,38017883..38018021, 38018208..38018448,38018821..38019001,38019955..38020029, 38020111..38020261,38020352..38020439,38020731..38021481, 38021568..38021731,38022500..38022709)) /locus_tag="TCM_026389" /product="Tesmin/TSO1-like CXC domain-containing protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021837001.2" /inference="similar to AA sequence:ricco:30128.m008617" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:PASA:2:TSA:puevd3b025526t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10829t3" mRNA complement(join(38017050..38017738,38017883..38018021, 38018208..38018274,38018353..38018448,38018821..38019001, 38019955..38020029,38020111..38020261,38020352..38020439, 38020731..38021481,38021568..38021731,38022500..38022663)) /locus_tag="TCM_026389" /product="Tesmin/TSO1-like CXC domain-containing protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021837001.2" /inference="similar to AA sequence:ricco:30128.m008617" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc585t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10829t3; inference alignment:Newbler:10:TSA:cgbaP1_g01361t00001" CDS complement(join(38017238..38017344,38017551..38017792, 38017883..38018021,38018208..38018274,38018353..38018448, 38018821..38019001,38019955..38020029,38020111..38020261, 38020352..38020439,38020731..38021481,38021568..38021731, 38022500..38022556)) /locus_tag="TCM_026389" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30128.m008617" /codon_start=1 /product="Tesmin/TSO1-like CXC domain-containing protein, putative isoform 1" /protein_id="EOY11118.1" /db_xref="TAIR:AT4G14770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HTT3" /translation="MDTPDKTQITPTPSLSKFEDSPVFKYINSLSPIELAKFRQTDNA FNSLAFLSPSSLFPSPQISCHRESRFSVKRHHFSAASNSSVLQSSNDLNTDEGASKAI EQSYLYDEQPGCLNSGSSSKGVSSDQLDDQSDLAIELPRTLKYDCGSPDGNLEPCDEI LKNTSEKVAGHEASPFQHNKDEGEERQMSFENERDLRKIRRIMRSEESAGCDWVAIVS DVADLLTTNSSIIYENIEGQDRRTADPGTTSFISTILQFPLDNSNNLENTETGDPSGS CKQSKLGVPVTDQTPAILSTCLLDKLVVSDSGLNKDDKGEKCNQSSHQQRSIRRRCLV FEKSPGFGLHLNSLANTSNDQSPLSKLTPSTMKRDEVPHHNKAVVTDNSPETPATVSG NETDLNSPEKKRTKFEHVEENAACKRCNCKRSKCLKLYCDCFAAGLYCIEPCSCQDCF NKPIHENKVLETRRQIESRNPLAFAPKVIRSTDSVSDSGGETNKTPASARHKRGCNCK KSSCLKKYCECFQAGVGCSPSCRCEGCKNRFGRKGGGDESESDGEDLETCERNASEKN SQDIAINRSEEYPDLSVPSSDLSRLPFAYSGKLSGSFLHSVRLSPQLCTTQELGSSDS SSCRPKFESHLQAIPEDKTAEILKHNLSPVVLKATSPNCKRVSPPHLHDPVLNGYGSR AFKFHKSTVLSLECALFIKVETL" CDS complement(join(38017465..38017738,38017883..38018021, 38018208..38018274,38018353..38018448,38018821..38019001, 38019955..38020029,38020111..38020261,38020352..38020439, 38020731..38021481,38021568..38021731,38022500..38022556)) /locus_tag="TCM_026389" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30128.m008617" /codon_start=1 /product="Tesmin/TSO1-like CXC domain-containing protein, putative isoform 2" /protein_id="EOY11119.1" /db_xref="TAIR:AT4G14770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HTT3" /translation="MDTPDKTQITPTPSLSKFEDSPVFKYINSLSPIELAKFRQTDNA FNSLAFLSPSSLFPSPQISCHRESRFSVKRHHFSAASNSSVLQSSNDLNTDEGASKAI EQSYLYDEQPGCLNSGSSSKGVSSDQLDDQSDLAIELPRTLKYDCGSPDGNLEPCDEI LKNTSEKVAGHEASPFQHNKDEGEERQMSFENERDLRKIRRIMRSEESAGCDWVAIVS DVADLLTTNSSIIYENIEGQDRRTADPGTTSFISTILQFPLDNSNNLENTETGDPSGS CKQSKLGVPVTDQTPAILSTCLLDKLVVSDSGLNKDDKGEKCNQSSHQQRSIRRRCLV FEKSPGFGLHLNSLANTSNDQSPLSKLTPSTMKRDEVPHHNKAVVTDNSPETPATVSG NETDLNSPEKKRTKFEHVEENAACKRCNCKRSKCLKLYCDCFAAGLYCIEPCSCQDCF NKPIHENKVLETRRQIESRNPLAFAPKVIRSTDSVSDSGGETNKTPASARHKRGCNCK KSSCLKKYCECFQAGVGCSPSCRCEGCKNRFGRKGGGDESESDGEDLETCERNASEKN SQDIAINRSEEYPDLSVPSSDLSRLSPQLCTTQELGSSDSSSCRPKFESHLQAIPEDK TAEILKHNLSPVVLKATSPNCKRVSPPHRECSSSNTWRSRKLILRSVPPFPSFSQP" mRNA complement(join(38018142..38018274,38018353..38018448, 38018821..38019001,38019955..38020029,38020111..38020261, 38020352..38020439,38020731..38021481,38021568..38021731, 38022500..38022663)) /locus_tag="TCM_026389" /product="Tesmin/TSO1-like CXC domain-containing protein, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021837001.2" /inference="similar to AA sequence:Phytozome:GSVIVT01021837001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc585t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10829t3" CDS complement(join(38018152..38018274,38018353..38018448, 38018821..38019001,38019955..38020029,38020111..38020261, 38020352..38020439,38020731..38021481,38021568..38021731, 38022500..38022556)) /locus_tag="TCM_026389" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Tesmin/TSO1-like CXC domain-containing protein, putative isoform 4" /protein_id="EOY11121.1" /db_xref="Phytozome:GSVIVT01021837001" /db_xref="TAIR:AT4G14770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HTT3" /translation="MDTPDKTQITPTPSLSKFEDSPVFKYINSLSPIELAKFRQTDNA FNSLAFLSPSSLFPSPQISCHRESRFSVKRHHFSAASNSSVLQSSNDLNTDEGASKAI EQSYLYDEQPGCLNSGSSSKGVSSDQLDDQSDLAIELPRTLKYDCGSPDGNLEPCDEI LKNTSEKVAGHEASPFQHNKDEGEERQMSFENERDLRKIRRIMRSEESAGCDWVAIVS DVADLLTTNSSIIYENIEGQDRRTADPGTTSFISTILQFPLDNSNNLENTETGDPSGS CKQSKLGVPVTDQTPAILSTCLLDKLVVSDSGLNKDDKGEKCNQSSHQQRSIRRRCLV FEKSPGFGLHLNSLANTSNDQSPLSKLTPSTMKRDEVPHHNKAVVTDNSPETPATVSG NETDLNSPEKKRTKFEHVEENAACKRCNCKRSKCLKLYCDCFAAGLYCIEPCSCQDCF NKPIHENKVLETRRQIESRNPLAFAPKVIRSTDSVSDSGGETNKTPASARHKRGCNCK KSSCLKKYCECFQAGVGCSPSCRCEGCKNRFGRKGGESLSGTVWLNTNINVWN" CDS complement(join(38018302..38018448,38018821..38019001, 38019955..38020029,38020111..38020261,38020352..38020439, 38020731..38021481,38021568..38021731,38022500..38022556)) /locus_tag="TCM_026389" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30128.m008617" /codon_start=1 /product="Tesmin/TSO1-like CXC domain-containing protein, putative isoform 3" /protein_id="EOY11120.1" /db_xref="TAIR:AT4G14770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HTT3" /translation="MDTPDKTQITPTPSLSKFEDSPVFKYINSLSPIELAKFRQTDNA FNSLAFLSPSSLFPSPQISCHRESRFSVKRHHFSAASNSSVLQSSNDLNTDEGASKAI EQSYLYDEQPGCLNSGSSSKGVSSDQLDDQSDLAIELPRTLKYDCGSPDGNLEPCDEI LKNTSEKVAGHEASPFQHNKDEGEERQMSFENERDLRKIRRIMRSEESAGCDWVAIVS DVADLLTTNSSIIYENIEGQDRRTADPGTTSFISTILQFPLDNSNNLENTETGDPSGS CKQSKLGVPVTDQTPAILSTCLLDKLVVSDSGLNKDDKGEKCNQSSHQQRSIRRRCLV FEKSPGFGLHLNSLANTSNDQSPLSKLTPSTMKRDEVPHHNKAVVTDNSPETPATVSG NETDLNSPEKKRTKFEHVEENAACKRCNCKRSKCLKLYCDCFAAGLYCIEPCSCQDCF NKPIHENKVLETRRQIESRNPLAFAPKVIRSTDSVSDSGGETNKTPASARHKRGCNCK KSSCLKKYCECFQVCQFSSFCIEMFSSPI" gene 38023004..38037637 /locus_tag="TCM_026390" /note="dbxref CacaoGD:Thecc1EG026390" mRNA join(38023004..38023199,38026335..38027250, 38032373..38033392,38035970..38036137,38037473..38037637) /locus_tag="TCM_026390" /product="Lysine/ornithine decarboxylase" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026391t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s26760.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.23 coverage" CDS join(38023122..38023199,38026335..38027250, 38032373..38032932) /locus_tag="TCM_026390" /note="paralog of Thecc1EG026391t1" /codon_start=1 /product="Lysine/ornithine decarboxylase" /protein_id="EOY11122.1" /db_xref="Phytozome:POPTR_0005s26760.1" /translation="MVMLVPIEFFLVGFGSINNCIWLPHQTWEWLALVIISKPESHIK YAAKVGVNLATFDSKCELEKIKKWHPKCALLMRIQVPETSGAAFLFGSKFGALPEEIV PLLQAAQAAELNVVGVSFHIGSRAINYHAFEEAILAAKTTFETAAQLGIPKMHIINIG GGFTSGPKFTEAASAVKVALQKYFPTGPTTGLKIMAEPGRFFANEPFTLATSILGKRI RNEIKEYWINDGMSGSMNYLKYDHDDVICTPLANYGNNDVITRKGLKTSDSTVFGPTC DPADTVLEGYPLPDLQVNDWLVFHNMGAYTSSRGNDFNGFETSAIPTYLANSDKITAQ LGLPKMHIVDIGGGFTSGPKFAEAASAVKVALQKYFPNGHASGLKIMAEPGRFIANEP FTLATSILGKRIRNEIKEYWINDGMSGSMNYLKYDHDDVICTPLANHGSNYVITCKGL KTTDSTVFGPACDPDDTVLEGYPLPDLQVNDWLVIHNMGAYTSSRGNDFNGFKTSAIP TYVGNSDKS" mobile_element 38024576..38024763 /note="source:CACAO_hAT_E3311_scaffold_8 2021 2207" /mobile_element_type="transposon:TIR/hAT" mobile_element 38027435..38027762 /note="source:CACAO_M_E34404_F23_scaffold_5 1 330" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 38031607..38031677 /note="source:CACAO_PIF_E144_scaffold_10 3585 3656" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 38033241..38042746 /locus_tag="TCM_026391" /note="dbxref CacaoGD:Thecc1EG026391" mRNA join(38033241..38033316,38035970..38036137, 38038879..38040208,38040517..38040605,38042025..38042746) /locus_tag="TCM_026391" /product="Lysine/ornithine decarboxylase" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034309t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s26760.1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.72 coverage" mobile_element 38035198..38035304 /note="source:scaffold_7_CACTA_0779 11393 11503" /mobile_element_type="transposon:TIR/CACTA" CDS join(38036135..38036137,38038879..38040208, 38040517..38040605,38042025..38042339) /locus_tag="TCM_026391" /note="paralog of Thecc1EG034309t1" /codon_start=1 /product="Lysine/ornithine decarboxylase" /protein_id="EOY11123.1" /db_xref="Phytozome:POPTR_0005s26760.1" /translation="MALLIIWETRTLLYNLSSSFVYRGIINSLLSSPKSFQTMVGPAM VTEKRVAATRLSKDELIAFIQSIILNEQQEEMGPFYVLDLGVVRSLLDAWTLNLPMVQ PFYAVKCNPNPAFLKEMAALGTSFDCASRAEIQTILSLGVSPDRIVFANTCKPESHIK YAAKVGVNLATFDSKCELEKIKKWHPKCALLMRIQVPETSGAAFLFGSKFGALPEEIV PLLQSAQAAELNVVGVSFHIGSRAINYHAFEEAILAAKTTFETAAQLGLPKMHILNIG GGFTSGPKFTEAASAVKVALQKYFPNGPATGLKIMAEPGRFFANEPFTLATSILGKRI RNEIKEYWINDGMSGSMNYLKYDHDDVICTPLANYGSNDVMTCKGLKTSDSTVFGPTC DPEDTVLEGYPLPDLQVNDWLVFHNLGAYTSSRGNDFNGFKTSAIPTYLANFGCFGFF FVIPLSPRHIRSLLPGAFARPFRGKSTRWPCSSDCLSSRWGDFQGQSHFATSSSNGAK PSSPTFHSYMAPELVSPEGLGIKLNPSKLLHIFKFAEELSISKLYYVRKCCKNYEIIF KELVKILHRKAN" mobile_element complement(38036897..38036971) /note="source:CACAO_Mutator_E592_scaffold_3 4074 4148" /mobile_element_type="transposon:TIR/Mutator" mobile_element 38037532..38037666 /note="source:scaffold_9_CACTA_0942 5244 5380" /mobile_element_type="transposon:TIR/CACTA" mobile_element 38040971..38041940 /note="source:scaffold_5_CACTA_0614 1698 2641" /mobile_element_type="transposon:TIR/CACTA" mobile_element 38042238..38042325 /note="source:CACAO_M_E34377_F10_scaffold_5 4497 4578" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(38044219..38047867) /locus_tag="TCM_026393" /note="dbxref CacaoGD:Thecc1EG026393" mRNA complement(join(38044219..38044847,38045104..38045239, 38045454..38045509,38045624..38045680,38045753..38045830, 38045901..38045987,38046104..38046164,38046830..38046918, 38047051..38047148,38047497..38047596,38047705..38047867)) /locus_tag="TCM_026393" /product="N-MYC downregulated-like 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021838001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037272t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021838001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06970t00001" CDS complement(join(38044614..38044847,38045104..38045239, 38045454..38045509,38045624..38045680,38045753..38045830, 38045901..38045987,38046104..38046164,38046830..38046918, 38047051..38047148,38047497..38047596,38047705..38047764)) /locus_tag="TCM_026393" /note="paralog of Thecc1EG037272t1" /codon_start=1 /product="N-MYC downregulated-like 1" /protein_id="EOY11124.1" /db_xref="Phytozome:GSVIVT01021838001" /db_xref="TAIR:AT5G56750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5SNH3" /translation="MGESSDSVSIDIDMVPFGGKEFLVKTSRGSLSVFVCGDQEKPAL ITYPDVALNYMSCFQGLFVCPDAASLLLHNFCIYHIDAPGHELGANVISSDVPLLSVD DLADQVAEVLDFFGLKRVLCLGVTAGAYILTLFAMKYKERVLGLILVSPVCKAPTWAE WLYNKVLMNLLYFYGMCGVLKECLLQRYFSKELRSSVHGTESEIIQACLKLLDERQSL NVMRFLEAINKRHDLTDDLKKLRCKTLIFVGESSPFRTESVHMSAKIGRKNCTLVEVK ACGSLVTEEHPLAMLVPIEFFLMGFGFHRQPHFATSSSNGSNPSSPSSHSCIAPELLS PEGLGIKLKPIKTRADI" gene complement(38051782..38053538) /locus_tag="TCM_026394" /note="dbxref CacaoGD:Thecc1EG026394" mRNA complement(join(38051782..38053026,38053124..38053235, 38053458..38053538)) /locus_tag="TCM_026394" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s05250.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004346t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s05250.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10831t1" CDS complement(38052027..38052929) /locus_tag="TCM_026394" /note="paralog of Thecc1EG004346t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11125.1" /db_xref="Phytozome:POPTR_0005s05250.1" /db_xref="TAIR:AT5G28150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RX84" /translation="MRDFPSCFGENGVQVADSSSSNTSKNAQNLVTCVYQCRIRGRSC LITVTWSKNLMGQGLSVGIDDSANQCLCKVDIKPWLFSKRKGSKSLEAYSCKIDIYWD LSSAKFGSGPEPLEGFYVGVVADKQMVLLLGDMRKEAYKKTGATPVPSTAVYVAKKEH VFGKKVFGTKAQFCDNGQIHDLIIECDTIGVNDPCLIIRLDGKTLMQVKRLRWKFRGN HTILVDGMAVEVYWDVHNWLFGASLGNAVFMFKTFLAAEEKLWVSQPIPNPSTLQWSF SQRFQDSKSQNLGFSLILYAWKNE" mobile_element complement(38055097..38055251) /note="source:scaffold_4_CACTA_0483 972 1141" /mobile_element_type="transposon:TIR/CACTA" gene 38057583..38060500 /locus_tag="TCM_026395" /note="dbxref CacaoGD:Thecc1EG026395" mRNA join(38057583..38058191,38058651..38058752, 38059093..38059157,38059788..38059843,38059942..38059974, 38060077..38060500) /locus_tag="TCM_026395" /product="Syntaxin of plants 52, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30128.m008621" /inference="similar to AA sequence:Phytozome:POPTR_0013s03450.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:PASA:2:TSA:puevd3b025532t1a2; inference alignment:Newbler:10:TSA:cgbaP1_g00947t00001" mRNA join(38057881..38058191,38058447..38058510, 38058640..38058752,38059093..38059157,38059788..38059843, 38059942..38059974,38060077..38060391) /locus_tag="TCM_026395" /product="Syntaxin of plants 52, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30128.m008621" /inference="similar to AA sequence:Phytozome:POPTR_0013s03450.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00947t00001; inference alignment:Newbler:10:TSA:cgbaP1_g00947t00001" CDS join(38057968..38058191,38058447..38058510, 38058640..38058752,38059093..38059157,38059788..38059843, 38059942..38059974,38060077..38060199) /locus_tag="TCM_026395" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Syntaxin of plants 52, putative isoform 1" /protein_id="EOY11126.1" /db_xref="Phytozome:POPTR_0013s03450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I8C9" /translation="MYKQALMGDAWIREAQEASKLVEDIETRVKNKNPSLKHQENRLV DITARSKLLEAGIKLDRLESLLRNPPSKPILTVTVHKWLFLTLFVMDMVDSLSICRTN EDLDYRWKMLSELQLRTKALALSLYALPTSSRPGCLTPENAEAINTNVSDCEQDQTKS SSSRDDPELLRPLISNDVTLQSQVQMKQCGTSTSLSLLQKVFWIFGAVLGSAALIFIL VLICAVI" CDS join(38057968..38058191,38058651..38058752, 38059093..38059157,38059788..38059843,38059942..38059974, 38060077..38060199) /locus_tag="TCM_026395" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Syntaxin of plants 52, putative isoform 2" /protein_id="EOY11127.1" /db_xref="Phytozome:POPTR_0013s03450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I8C9" /translation="MYKQALMGDAWIREAQEASKLVEDIETRVKNKNPSLKHQENRLV DITARSKLLEAGIKLDRLESLLRNPPSKPILTNEDLDYRWKMLSELQLRTKALALSLY ALPTSSRPGCLTPENAEAINTNVSDCEQDQTKSSSSRDDPELLRPLISNDVTLQSQVQ MKQCGTSTSLSLLQKVFWIFGAVLGSAALIFILVLICAVI" gene 38061161..38062591 /locus_tag="TCM_026396" /note="dbxref CacaoGD:Thecc1EG026396" mRNA join(38061161..38061569,38061874..38062591) /locus_tag="TCM_026396" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400052404.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020613t1" /inference="similar to AA sequence:Phytozome:GSVIVT01017965001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10827t1" CDS join(38061497..38061569,38061874..38061989) /locus_tag="TCM_026396" /note="paralog of Thecc1EG020613t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11128.1" /db_xref="Phytozome:GSVIVT01017965001" /db_xref="UniProtKB/TrEMBL:UniRef50_D7T6X2" /translation="MGWLQSLLFPLKKLWFRMHSAPRKSRGIYILYEDVKSCPDEDVH VLWSILVESHPPQITSRQ" gene complement(38062915..38065967) /locus_tag="TCM_026397" /note="dbxref CacaoGD:Thecc1EG026397" mRNA complement(join(38062915..38064084,38064177..38064542, 38065644..38065967)) /locus_tag="TCM_026397" /product="PIF-like orf1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s11760.1" /inference="similar to AA sequence:Phytozome:POPTR_0010s08650.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaL_g15074t00001" CDS complement(join(38063392..38064084,38064177..38064542)) /locus_tag="TCM_026397" /codon_start=1 /product="PIF-like orf1" /protein_id="EOY11129.1" /db_xref="Phytozome:POPTR_0010s08650.1" /translation="MKNARIVTTEVIQGRSNDKAKAVWDRNLTMVFCDLCIKEKDHNS RPGTHFKKEGWSRLVANFNKETGKEYEKSQLKNRWDLLKKEWKLWKQLKGNEFDTCFR WDLRKNNIDASEAWWEKKLKVVPEAVKFKNGGIDPELEEKLDRMFLGILVNDDITLAP TFGLLPTDGTDEDESPQVKVEVVAVEDIQTPKKTIDGHLIEIDNHCMEQIPQPHSESE HQSELPHEKKRSQESDSSDLNKGKKKVPKLVGRVAALSRHIDRLCSAAESMSTATSAK LTSEPYNIPEAVRLLDNMEQEVPKKSQLYYFATKLFLNKDKRTMFMSLSTETRAWWLK MEMEETSKFAQRDQIARQ" mobile_element 38066100..38066162 /note="source:scaffold_1_CACTA_0032 2357 2419" /mobile_element_type="transposon:TIR/CACTA" gene 38066361..38072851 /locus_tag="TCM_026398" /note="dbxref CacaoGD:Thecc1EG026398" mRNA join(38066361..38067022,38067562..38067686, 38067893..38068027,38068259..38068331,38068434..38068549, 38068876..38068980,38069342..38069586,38069706..38069793, 38070014..38070056,38070154..38070310,38070458..38070586, 38070901..38070973,38071632..38071796,38072310..38072851) /locus_tag="TCM_026398" /product="Zeta-carotene desaturase" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021843001" /inference="similar to AA sequence:Phytozome:GSVIVT01021843001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10866t1" CDS join(38066902..38067022,38067562..38067686, 38067893..38068027,38068259..38068331,38068434..38068549, 38068876..38068980,38069342..38069586,38069706..38069793, 38070014..38070056,38070154..38070310,38070458..38070586, 38070901..38070973,38071632..38071796,38072310..38072477) /locus_tag="TCM_026398" /codon_start=1 /product="Zeta-carotene desaturase" /protein_id="EOY11130.1" /db_xref="Phytozome:GSVIVT01021843001" /db_xref="TAIR:AT3G04870.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q38893" /translation="MASASFLFAATGLGSVAQVKPPKLFVKSSLDTSVSDMSVNAPKG LFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFVDR KGNHIEMGLHVFFGCYNNLFRLMKKVGADKNLLVKDHTHTFVNKGGEIGGNPAFTFMT LSLDAELDFRFPVGAPIHGIRAFLSTNQLETYDKARNALALALSPVVKALVDPDAAMR DIRDLDSISFSDWFLSKGGTRTSIQRMWDPVAYALGFIDCDNISARCMLTIFSLFATK TEASLLRMLKGSPDVYLSGPIRNYITERGGRFHLRWGCREILYDKSADGETYITGLAM SKATNKKVVKADAYVAACDVPGIKRLLPSQWRESEFFNNIYELVGVPVVTVQLRYNGW VTELQDLERSRQLRQAIGLDNLLYTPDADFSCFADLALTSPEDYYTEGQGSLLQCVLT PGDPYMPLPNDEIIKRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYREGPGKDPFRPD QKTPIKNFFLAGSYTKQDYIDSMEGATLSGRQASAYICNAGEDLVALQKKLAAVGSLE QMESSSVPDELSLV" gene complement(38073160..38074740) /locus_tag="TCM_026399" /note="dbxref CacaoGD:Thecc1EG026399" mRNA complement(join(38073160..38074433,38074715..38074740)) /locus_tag="TCM_026399" /product="DNA-damage-repair/toleration protein (DRT102)" /inference="alignment:exonerate-protein:2:frave:gene16517" /inference="similar to AA sequence:frave:gene16517" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.41 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10862t1" CDS complement(38073408..38074361) /locus_tag="TCM_026399" /note="dbxref frave:gene16517" /codon_start=1 /product="DNA-damage-repair/toleration protein (DRT102)" /protein_id="EOY11131.1" /db_xref="TAIR:AT3G04880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q05212" /translation="MADPAAATATATATAPRPLKIIAGADSFGAELKDAMVSHLQSLS IEVEDLGTTSYYNVGAEVGRRVSSCTTASPDVETRGLLACGTGVGVGIFANKFPGVFA TTCLTSDEARNNRSINNCNVLALSGMSTSKDTAKEIVDTWLNTPFKSPCPASGSQPWP EDISKFFDESMTEMPKIGTSEKPQAESCAICCLVKNRELNPIDIIPGGSMKILRESPT SAIVRFKAGSVEPAHHHTFGHCLVVMEGKKSVWNLTKEERYDLSVGDYLFTPAGDVHR VKYYEDTQFFIKWDGKWDMFFDEDLDTAKLAIEKELAKGYA" gene complement(38076469..38077966) /locus_tag="TCM_026400" /note="dbxref CacaoGD:Thecc1EG026400" mRNA complement(38076469..38077966) /locus_tag="TCM_026400" /product="Sulfate/thiosulfate import ATP-binding protein cysA" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0030s00500.1" /inference="similar to AA sequence:ricco:30128.m008628" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g14991t1" CDS complement(38076879..38077874) /locus_tag="TCM_026400" /note="dbxref ricco:30128.m008628" /codon_start=1 /product="Sulfate/thiosulfate import ATP-binding protein cysA" /protein_id="EOY11132.1" /db_xref="TAIR:AT5G28150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HTT8" /translation="MIPACFSHPNTLSSSSQLPQNLITCIYQTQLCNSPTYLTLTWSK TLFSHSLTIYAADSFSITISLYPSTFSFFRNRPGSKSIYLTHHHYQRIKLYWDFTRAD FAENSAEPESCFYIAISCNARLEFFLGDLQEELTRRSGLVIARQVLPEPTLLSRREHV FGRRSYISRAKFLGSKHEIGIECSGGVLKVKVDGETSLVIKRLAWKFRGNERIYVNGI EVEFFWDVFNWVSSDNNSNTNGHGVFIFQVGDGGVWPEMIGPEKRLMRKSLSSAAGSA PKMPSTTLSPSPSCSSVLQWAEESSDGGRSSCSSSTRSYGSNGGFSLLLYAWNKD" gene complement(38080304..38081515) /locus_tag="TCM_026401" /note="dbxref CacaoGD:Thecc1EG026401" mRNA complement(join(38080304..38080392,38081035..38081515)) /locus_tag="TCM_026401" /product="Calcium-binding EF hand family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s05150.1" /inference="similar to AA sequence:Phytozome:POPTR_0005s05150.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10845t1" CDS complement(38081070..38081462) /locus_tag="TCM_026401" /codon_start=1 /product="Calcium-binding EF hand family protein, putative" /protein_id="EOY11133.1" /db_xref="Phytozome:POPTR_0005s05150.1" /translation="MSVAVLDGNTVIRFIEAKEAFGNCVDEYFKMLDSNGDGGISRDE LEEGLGRIFTMELESKTKENIDRFYSTIFERFDEDRDGRIDCNEFESLMREIMLAMAR GIGDLPIIVALDQDSLLMMAVKHELAGT" gene 38089154..38094403 /locus_tag="TCM_026402" /note="dbxref CacaoGD:Thecc1EG026402" mRNA join(38089154..38089629,38090667..38091148, 38091248..38091285,38091465..38091692,38091799..38092019, 38092210..38092367,38092465..38092903,38092995..38093789, 38093872..38094403) /locus_tag="TCM_026402" /product="Kinase, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30128.m008630" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020616t1" /inference="similar to AA sequence:ricco:30128.m008630" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04521t00001" CDS join(38091074..38091148,38091248..38091285, 38091465..38091692,38091799..38092019,38092210..38092367, 38092465..38092903,38092995..38093789,38093872..38093972) /locus_tag="TCM_026402" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30128.m008630; paralog of Thecc1EG020616t1" /codon_start=1 /product="Kinase, putative isoform 1" /protein_id="EOY11134.1" /db_xref="TAIR:AT3G04910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RES6" /translation="MNGLLHLEPDCSEFVEVDPTGRYGRYSEILGKGASKIVYRAYDE YEGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHKNIMKFYTSWVDTANRNINF VTEMFTSGTLRQYRLKHKRVNIRAVKRWCRQILRGLLYLHSHDPPVIHRDLKCDNIFV NGNQGEVKIGDLGLAAILRKSHAAHCVGTPEFMAPEVYEEAYNELVDIYSFGMCILEM VTFEYPYSECTHPAQIYKKVISGRKPDALYKVKDPEVRRFVEKCLATVSLRLSARELL NDSFLQIDDCESDLRPLEYGRELDEMGLLIRQPYLELHHSSNSYSNGYSNGYTYETPN EWGYHPAEIESSGIELFEYHEDEHAANVDISIKGKRGDDGGIFLRLRIADKEGRIRNI YFPFDIETDTALSVATEMVAELDITDQDVTKIADMIDGEITSLVPDWRPGPGIEETPR FANQNFCHNCASNRTSTGSLLEYLTHNAGVKDLQLLQCCRNGCASMHGRFEEITFQVE ESEHYVTDGAPNESSQSDNLHYQEIWDQHESHELSPVGSRQSRSDEEYEKSDQSFSAK DEKEVKAENKVASSARNSIQCLTGSHSFSTVHSLYCDLSDNYDNEVQQELRWLKANYQ MKLRELRDQQLGLVSDSSTCGNRDKKRGILTPISMTLRIRAAPIRRPKGPGIARRWSL QK" mRNA join(38091670..38091692,38091799..38092367, 38092465..38092903,38092995..38094317) /locus_tag="TCM_026402" /product="No lysine kinase 1 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30128.m008630" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020616t1" /inference="similar to AA sequence:frave:gene16513" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc932t7; inference alignment:Newbler:10:TSA:cgbaB_g04521t00001" CDS join(38092224..38092367,38092465..38092903, 38092995..38094070) /locus_tag="TCM_026402" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene16513; paralog of Thecc1EG020616t1" /codon_start=1 /product="No lysine kinase 1 isoform 2" /protein_id="EOY11135.1" /db_xref="TAIR:AT3G04910.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RES6" /translation="MAPEVYEEAYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYK KVISGRKPDALYKVKDPEVRRFVEKCLATVSLRLSARELLNDSFLQIDDCESDLRPLE YGRELDEMGLLIRQPYLELHHSSNSYSNGYSNGYTYETPNEWGYHPAEIESSGIELFE YHEDEHAANVDISIKGKRGDDGGIFLRLRIADKEGRIRNIYFPFDIETDTALSVATEM VAELDITDQDVTKIADMIDGEITSLVPDWRPGPGIEETPRFANQNFCHNCASNRTSTG SLLEYLTHNAGVKDLQLLQCCRNGCASMHGRFEEITFQVEESEHYVTDGAPNESSQSD NLHYQEIWDQHESHELSPVGSRQSRSDEEYEKSDQSFSAKDEKEVKAENKVASSARNS IQCLTGSHSFSTVHSLYCDLSDNYDNEVQQELRWLKANYQMKLRELRDQQLGLVSDSS TCGNRDKKRGDEVSSLPTFSKSERDQGYELKLFAHDRHFNSDFHDFKNKSCPDSKTQR ARYCEAMESPKVEDMVTAQSCFTGSLLPHSLHRTTSLPVDAVDT" gene complement(38096808..38102057) /locus_tag="TCM_026403" /note="dbxref CacaoGD:Thecc1EG026403" mRNA complement(join(38096808..38097156,38097426..38097523, 38098325..38098431,38098516..38098629,38098795..38098959, 38099583..38099638,38100292..38100394,38101143..38101907)) /locus_tag="TCM_026403" /product="Myelin-associated oligodendrocyte basic protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene16504" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400038958" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08716t00001" mRNA complement(join(38098231..38098431,38098516..38098629, 38098795..38098959,38101143..38102057)) /locus_tag="TCM_026403" /product="Myelin-associated oligodendrocyte basic protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene16504" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400038958" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1640t1_C2; inference alignment:Newbler:10:TSA:cgbaB_g08716t00001" CDS complement(join(38098339..38098431,38098516..38098629, 38098795..38098959,38101143..38101808)) /locus_tag="TCM_026403" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Myelin-associated oligodendrocyte basic protein isoform 2" /protein_id="EOY11137.1" /db_xref="Phytozome:PGSC0003DMP400038958" /db_xref="TAIR:AT1G54520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FPD7" /translation="MATTASSLLQSNPLKLKHYFPRHLPPPSPPRLPKFSGNLTFQTQ GSTKCNVRCFLLPEKRKSSKLDSNHLSSSSDGKHPFEIIAETISKALNALKKPAIAAV LLGLLLMYDPNNAALAASGGRMGGRSFSSSSSSSRSYSVPRNGGSRFSSYSVPYYAPA PFGGGGGFYMGPAVGVGVGAGSSFFLILIGFAAFVLVSGFLSDRSESSVLTASERTSV LKLQVDAKRSIDDGEKRFNQLSIEERGKFDEETLVNVNNIKRQSTTSRKASGFSNEYI VITILVAAEGLHKLPPINGSRDLKEALQKLASIPTSKILAVEVLWTPQNENDTLSERE LLEDYPLLRPL" CDS complement(join(38098339..38098431,38098516..38098629, 38098795..38098959,38099583..38099638,38100292..38100394, 38101143..38101808)) /locus_tag="TCM_026403" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Myelin-associated oligodendrocyte basic protein isoform 1" /protein_id="EOY11136.1" /db_xref="Phytozome:PGSC0003DMP400038958" /db_xref="TAIR:AT1G54520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FPD7" /translation="MATTASSLLQSNPLKLKHYFPRHLPPPSPPRLPKFSGNLTFQTQ GSTKCNVRCFLLPEKRKSSKLDSNHLSSSSDGKHPFEIIAETISKALNALKKPAIAAV LLGLLLMYDPNNAALAASGGRMGGRSFSSSSSSSRSYSVPRNGGSRFSSYSVPYYAPA PFGGGGGFYMGPAVGVGVGAGSSFFLILIGFAAFVLVSGFLSDRSESSVLTASERTSV LKLQVGLLGMGRSLQKDLNRIAEVADTSTSEGLSFVLTETTLALLRHPHYCISGYSSV DAKRSIDDGEKRFNQLSIEERGKFDEETLVNVNNIKRQSTTSRKASGFSNEYIVITIL VAAEGLHKLPPINGSRDLKEALQKLASIPTSKILAVEVLWTPQNENDTLSERELLEDY PLLRPL" gene 38104674..38106501 /locus_tag="TCM_026404" /note="dbxref CacaoGD:Thecc1EG026404" mRNA join(38104674..38104829,38105242..38105283, 38105377..38105547,38106072..38106158,38106278..38106501) /locus_tag="TCM_026404" /product="Ribosomal protein S24e family protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400034764" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020621t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400033641" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g15028t1" CDS join(38104758..38104829,38105242..38105283, 38105377..38105547,38106072..38106158,38106278..38106310) /locus_tag="TCM_026404" /note="paralog of Thecc1EG020621t1" /codon_start=1 /product="Ribosomal protein S24e family protein" /protein_id="EOY11138.1" /db_xref="Phytozome:PGSC0003DMP400033641" /db_xref="TAIR:AT5G28060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LC83" /translation="MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKEK LSRMYEVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKV EKSRKQMKERKNRAKKIRGVKKTKAGDAAKKK" gene 38107352..38110844 /locus_tag="TCM_026405" /note="dbxref CacaoGD:Thecc1EG026405" mRNA join(38107352..38110099,38110495..38110844) /locus_tag="TCM_026405" /product="Cysteine/Histidine-rich C1 domain family protein, putative" /inference="alignment:exonerate- protein:2:TAIR:AT4G01350.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020092t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s05820.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.41 coverage" CDS 38107596..38109707 /locus_tag="TCM_026405" /note="paralog of Thecc1EG020092t1" /codon_start=1 /product="Cysteine/Histidine-rich C1 domain family protein, putative" /protein_id="EOY11139.1" /db_xref="Phytozome:POPTR_0016s05820.1" /db_xref="TAIR:AT3G48400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9P591" /translation="MELRCGLKEREMELRCGSSAEARGTVKHWLVLKEGQNDGKYRTK CCVVCKETVESGPRLGCSQCEDIYHKGCVFSALSDQEIVHPFHHEHSLYLCDQMHFDA TELVCNFCDKACNSPFFSCISCELCIHVRCATLPEVIAGKFVKIHHEDHIHPLVLIEN HSYKLEQAVCYCCSEPLVDSIFVCIDCKFYLHKNCVSPVKISHPCHRKHSLLLHVAAA FEPVSCKVCQRTESRQLFYRCSPCNFNLHTECVSPSPFVDNASHEHPFTCLLRHQSFI CDACGTQGDCAPYHCRTCNLLVHKECISLPRRFKITRHHHLLYHTYFLEEHEFKKWDC KICHNEVNAEHGSYNCSLCNYVVHVNCANDVADLDGLIMTRSKDKWPCKNLAFLFDES ISFIVIKEVEFEGHKIAKEIRHFSHVHDLALTGEIGDDKRCDGCMLSISTSSYGCSLC DFFLHKSCAELPREKHHWLHEHPFKLSSDTIFKCNWCHHESSGFSYYCGKCDMNLFLR CERISEEYTIQAHEHPLVFYHNYDGECNACGDHIDYAFKCKDCDFALDIQCLSLPYSK QHKCDQHPLILTYHGSNDALSNCYCDICEEERDSNRWFYGCAICNTSVHPKCVLEKYQ FIKLGSYYKDEHPHLLTYVQKIYCYPKCFKCDKPCLDLALECIEFGCKYVVHWECIKP SRLCFTRKMGRKREDGNQEED" gene 38111988..38114325 /locus_tag="TCM_026406" /note="dbxref CacaoGD:Thecc1EG026406" mRNA join(38111988..38112137,38112549..38112608, 38113028..38113218,38113778..38113882,38113977..38114325) /locus_tag="TCM_026406" /product="Cytidine/deoxycytidylate deaminase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400039024" /inference="similar to AA sequence:ricco:30128.m008633" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00454t00001; inference alignment:Newbler:10:TSA:cgbaP1_g00454t00001" gene complement(38112072..38130389) /locus_tag="TCM_026407" /note="dbxref CacaoGD:Thecc1EG026407" mRNA complement(join(38112072..38112136,38112548..38112606, 38113026..38113214,38113776..38113880,38113975..38115067, 38115326..38115357,38115525..38115613,38116381..38116560, 38116662..38116807,38117042..38117206,38117479..38117617, 38117741..38117818,38117963..38118031,38118806..38118925, 38120432..38120515,38120656..38120727,38121496..38121572, 38122932..38122986,38123432..38123524,38123717..38123794, 38124207..38124290,38125507..38125626,38126105..38126232, 38126520..38126631,38127570..38127668,38127790..38127864, 38128064..38128282,38129180..38129830)) /locus_tag="TCM_026407" /product="Sec23/Sec24 protein transport family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30128.m008634" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035130t1" /inference="similar to AA sequence:Phytozome:GSVIVT01014611001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc482t1; alternateUTRof:Thecc1EG026407t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc487t6" mRNA complement(join(38112072..38112136,38112548..38112697, 38113023..38113214,38113776..38113880,38113975..38115067, 38115326..38115357,38115525..38115613,38116381..38116560, 38116662..38116807,38117042..38117206,38117479..38117617, 38117741..38117818,38117963..38118031,38118806..38118925, 38120432..38120515,38120656..38120727,38121496..38121572, 38122932..38122986,38123432..38123524,38123717..38123794, 38124207..38124290,38125507..38125626,38126105..38126232, 38126520..38126631,38127570..38127668,38127790..38127864, 38128064..38128282,38129180..38129830)) /locus_tag="TCM_026407" /product="Sec23/Sec24 protein transport family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30128.m008634" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035130t1" /inference="similar to AA sequence:Phytozome:GSVIVT01014611001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc482t3; alternateUTRof:Thecc1EG026407t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc487t6" CDS join(38112122..38112137,38112549..38112608, 38113028..38113218,38113778..38113882,38113977..38114165) /locus_tag="TCM_026406" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30128.m008633" /codon_start=1 /product="Cytidine/deoxycytidylate deaminase family protein isoform 1" /protein_id="EOY11140.1" /db_xref="TAIR:AT5G28050.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K5T6" /translation="MEEAKVLEAKDGTISVASAFPGHQEAVQDRDHKFLTQAVEEAYK GVECKDGGPFGAVVVRNDEVVVSCHNMVLKNTDPTAHAEVTAIREACKKLNQIELSDC EIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKANLE IKKADGTGAIIAEQVFEKTKEKFTLY" mRNA join(<38113026..38113242,38113799..38113882, 38113977..>38114153) /locus_tag="TCM_026406" /product="Cytidine/deoxycytidylate deaminase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400039024" /inference="similar to AA sequence:ricco:30128.m008633" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is weak, protein is partial; similar to RNA sequence, EST 0.54 coverage; inference alignment:Newbler:10:TSA:cgbaB_g17139t00001; inference alignment:Newbler:10:TSA:cgbaP1_g00454t00001" CDS join(<38113027..38113242,38113799..38113882, 38113977..>38114153) /locus_tag="TCM_026406" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30128.m008633" /codon_start=1 /product="Cytidine/deoxycytidylate deaminase family protein isoform 2" /protein_id="EOY11141.1" /db_xref="TAIR:AT5G28050.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K5T6" /translation="AVQDRDHKFLTQAVEEAYKGVECKDGGPFGAVVVRNDEVVVSCH NMVLKNTDPTAHAEVTAIREVRPKKLIKIELSDCEIYASCEPCPMCFGAIHLSRIKRL VYGAKAEAAIAIGFDDFIADALRGTGFYQKANLEIKKADGTGAIIAEQVFEKTKEKF" mRNA complement(join(38113360..38115067,38115326..38115357, 38115525..38115613,38116381..38116560,38116662..38116807, 38117042..38117206,38117479..38117617,38117741..38117818, 38117963..38118031,38118806..38118925,38120432..38120515, 38120656..38120727,38121496..38121572,38122932..38122986, 38123432..38123524,38123717..38123794,38124207..38124290, 38125507..38125626,38126105..38126232,38126520..38126631, 38127570..38127668,38127790..38127864,38128064..38128282, 38129180..38129829,38130268..38130389)) /locus_tag="TCM_026407" /product="Sec23/Sec24 protein transport family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30128.m008634" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG035130t1" /inference="similar to AA sequence:Phytozome:GSVIVT01014611001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc487t6; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc487t6" CDS complement(join(38114958..38115067,38115326..38115357, 38115525..38115613,38116381..38116560,38116662..38116807, 38117042..38117206,38117479..38117617,38117741..38117818, 38117963..38118031,38118806..38118925,38120432..38120515, 38120656..38120727,38121496..38121572,38122932..38122986, 38123432..38123524,38123717..38123794,38124207..38124290, 38125507..38125626,38126105..38126232,38126520..38126631, 38127570..38127668,38127790..38127864,38128064..38128282, 38129180..38129809)) /locus_tag="TCM_026407" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG035130t1" /codon_start=1 /product="Sec23/Sec24 protein transport family protein isoform 1" /protein_id="EOY11142.1" /db_xref="Phytozome:GSVIVT01014611001" /db_xref="TAIR:AT4G32640.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I8B0" /translation="MATPMPPGLPRQPPPSTHNPNFQQSPDSLSDNLQKLNINKPTLP PFIRSPPPPSTSAPSPPISRPGAPPPGVVPRPNVPPNVGSVIPSGAPGGQPLPFGTRS PPGSLPSSKGGGPVISPGGSNASQLIAPPSAFVTPSSAWGGSIRNGPPVGVPPPMTGT VMSPGQAPNMGSFLGSPQGSYPPGPHMQSASPFSAPLAAPFGTQTWSPGQVALPTAAP DALQPPRMFGMPPLQPNQLSPAIDQTGTSLEGSWKSNSDQVPRPSPSSSTILHDTRQG NQANPPPPATSDYIVRDTGNCSPRHMRCTIHQIPCTADLLTNCGMQLALLVQPLALPH PSEEPIPVVDFGENGPIRCSRCKGYINPFMKFIDHGRRFICNFCGFFDNTPPEYQCNL GPDGRRRDADVRPELCKGTIEFVATKEYMMRDPMPAVYFFLIDVSMNAIQTGATAAAC AAINQVIADLPQEGARTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVQDVYIPLETD IIVQLSESRQHIEQLLESIPTMFLDNRTSESAFVAAVKAAFLAIKSTGGKLLVFQSVL PSVGMVALSARDAEGRSNTSAGEKEVHKLLQPADKTLKTMANEFAESQVCVDVFITTQ TYVDIASISLIPGTTGGQVYYYYPFSSVSDPAKLYNDLRWNITRPQGFEAVMRVRCSQ GIEVKEYHGNFCKRVPTDVDLPGIDSDKTIMVTLKHDDKLQDGSECTFQCALLYTTAY GQRRIRVSTLSLPCTSSLTNLFRAADLDAQFVCSLKQVANKIPSTPLLQIREQVTNIC INNLLAYRKFCTTSTSSGQFVLPEALKLLPLYTLALTKSTGLRIDGRIDDRSFWINIV SHISIPSAVSLVLPRMIAVHNLDLEEEGGSVIPPVLPLSSEYVSEDGIYLFENGVDGL IYVGSLVDSVILQQLFGISSVDETPTQFVLQQYDNSLSKKLNRVINEIRRQWCSYLRL TLCKKGDPSGMLFFSYLIEDPNPKGGQSYSEFLVYLHRKIQSKMS" CDS complement(join(38114958..38115067,38115326..38115357, 38115525..38115613,38116381..38116560,38116662..38116807, 38117042..38117206,38117479..38117617,38117741..38117818, 38117963..38118031,38118806..38118925,38120432..38120515, 38120656..38120727,38121496..38121572,38122932..38122986, 38123432..38123524,38123717..38123794,38124207..38124290, 38125507..38125626,38126105..38126232,38126520..38126631, 38127570..38127668,38127790..38127864,38128064..38128282, 38129180..38129809)) /locus_tag="TCM_026407" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG035130t1" /codon_start=1 /product="Sec23/Sec24 protein transport family protein isoform 1" /protein_id="EOY11143.1" /db_xref="Phytozome:GSVIVT01014611001" /db_xref="TAIR:AT4G32640.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I8B0" /translation="MATPMPPGLPRQPPPSTHNPNFQQSPDSLSDNLQKLNINKPTLP PFIRSPPPPSTSAPSPPISRPGAPPPGVVPRPNVPPNVGSVIPSGAPGGQPLPFGTRS PPGSLPSSKGGGPVISPGGSNASQLIAPPSAFVTPSSAWGGSIRNGPPVGVPPPMTGT VMSPGQAPNMGSFLGSPQGSYPPGPHMQSASPFSAPLAAPFGTQTWSPGQVALPTAAP DALQPPRMFGMPPLQPNQLSPAIDQTGTSLEGSWKSNSDQVPRPSPSSSTILHDTRQG NQANPPPPATSDYIVRDTGNCSPRHMRCTIHQIPCTADLLTNCGMQLALLVQPLALPH PSEEPIPVVDFGENGPIRCSRCKGYINPFMKFIDHGRRFICNFCGFFDNTPPEYQCNL GPDGRRRDADVRPELCKGTIEFVATKEYMMRDPMPAVYFFLIDVSMNAIQTGATAAAC AAINQVIADLPQEGARTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVQDVYIPLETD IIVQLSESRQHIEQLLESIPTMFLDNRTSESAFVAAVKAAFLAIKSTGGKLLVFQSVL PSVGMVALSARDAEGRSNTSAGEKEVHKLLQPADKTLKTMANEFAESQVCVDVFITTQ TYVDIASISLIPGTTGGQVYYYYPFSSVSDPAKLYNDLRWNITRPQGFEAVMRVRCSQ GIEVKEYHGNFCKRVPTDVDLPGIDSDKTIMVTLKHDDKLQDGSECTFQCALLYTTAY GQRRIRVSTLSLPCTSSLTNLFRAADLDAQFVCSLKQVANKIPSTPLLQIREQVTNIC INNLLAYRKFCTTSTSSGQFVLPEALKLLPLYTLALTKSTGLRIDGRIDDRSFWINIV SHISIPSAVSLVLPRMIAVHNLDLEEEGGSVIPPVLPLSSEYVSEDGIYLFENGVDGL IYVGSLVDSVILQQLFGISSVDETPTQFVLQQYDNSLSKKLNRVINEIRRQWCSYLRL TLCKKGDPSGMLFFSYLIEDPNPKGGQSYSEFLVYLHRKIQSKMS" CDS complement(join(38114958..38115067,38115326..38115357, 38115525..38115613,38116381..38116560,38116662..38116807, 38117042..38117206,38117479..38117617,38117741..38117818, 38117963..38118031,38118806..38118925,38120432..38120515, 38120656..38120727,38121496..38121572,38122932..38122986, 38123432..38123524,38123717..38123794,38124207..38124290, 38125507..38125626,38126105..38126232,38126520..38126631, 38127570..38127668,38127790..38127864,38128064..38128282, 38129180..38129809)) /locus_tag="TCM_026407" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG035130t1" /codon_start=1 /product="Sec23/Sec24 protein transport family protein isoform 1" /protein_id="EOY11144.1" /db_xref="Phytozome:GSVIVT01014611001" /db_xref="TAIR:AT4G32640.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I8B0" /translation="MATPMPPGLPRQPPPSTHNPNFQQSPDSLSDNLQKLNINKPTLP PFIRSPPPPSTSAPSPPISRPGAPPPGVVPRPNVPPNVGSVIPSGAPGGQPLPFGTRS PPGSLPSSKGGGPVISPGGSNASQLIAPPSAFVTPSSAWGGSIRNGPPVGVPPPMTGT VMSPGQAPNMGSFLGSPQGSYPPGPHMQSASPFSAPLAAPFGTQTWSPGQVALPTAAP DALQPPRMFGMPPLQPNQLSPAIDQTGTSLEGSWKSNSDQVPRPSPSSSTILHDTRQG NQANPPPPATSDYIVRDTGNCSPRHMRCTIHQIPCTADLLTNCGMQLALLVQPLALPH PSEEPIPVVDFGENGPIRCSRCKGYINPFMKFIDHGRRFICNFCGFFDNTPPEYQCNL GPDGRRRDADVRPELCKGTIEFVATKEYMMRDPMPAVYFFLIDVSMNAIQTGATAAAC AAINQVIADLPQEGARTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVQDVYIPLETD IIVQLSESRQHIEQLLESIPTMFLDNRTSESAFVAAVKAAFLAIKSTGGKLLVFQSVL PSVGMVALSARDAEGRSNTSAGEKEVHKLLQPADKTLKTMANEFAESQVCVDVFITTQ TYVDIASISLIPGTTGGQVYYYYPFSSVSDPAKLYNDLRWNITRPQGFEAVMRVRCSQ GIEVKEYHGNFCKRVPTDVDLPGIDSDKTIMVTLKHDDKLQDGSECTFQCALLYTTAY GQRRIRVSTLSLPCTSSLTNLFRAADLDAQFVCSLKQVANKIPSTPLLQIREQVTNIC INNLLAYRKFCTTSTSSGQFVLPEALKLLPLYTLALTKSTGLRIDGRIDDRSFWINIV SHISIPSAVSLVLPRMIAVHNLDLEEEGGSVIPPVLPLSSEYVSEDGIYLFENGVDGL IYVGSLVDSVILQQLFGISSVDETPTQFVLQQYDNSLSKKLNRVINEIRRQWCSYLRL TLCKKGDPSGMLFFSYLIEDPNPKGGQSYSEFLVYLHRKIQSKMS" mobile_element 38122137..38122251 /note="source:CACAO_M_S_E14849_F156_scaffold_2 646 761" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(38122168..38122465) /note="source:CACAO_M_E69306_F123_scaffold_9 4746 5026" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(38122534..38122590) /note="source:scaffold_4_CACTA_0494 2166 2222" /mobile_element_type="transposon:TIR/CACTA" mobile_element 38122589..38122770 /note="source:CACAO_M_E3248_F5_scaffold_1 1652 1831" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 38132035..38136698 /locus_tag="TCM_026408" /note="dbxref CacaoGD:Thecc1EG026408" mRNA join(38132035..38134044,38136629..38136698) /locus_tag="TCM_026408" /product="DNA-binding storekeeper protein-related transcriptional regulator, putative" /inference="alignment:exonerate- protein:2:ricco:30128.m008635" /inference="similar to AA sequence:Phytozome:Glyma19g43180.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g15122t1" CDS 38132316..38133614 /locus_tag="TCM_026408" /codon_start=1 /product="DNA-binding storekeeper protein-related transcriptional regulator, putative" /protein_id="EOY11145.1" /db_xref="Phytozome:Glyma19g43180.1" /db_xref="TAIR:AT3G04930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GF32" /translation="MASEQYDAVLEESQDDDEEPSSSDNDLDENDDVLNGNDDVLNDE EDEELLEEEEDINSPSLLPQPIAAAASAVSSAAIPAVPLAVPSATAVTIAAVPNDESP PDSKRQRIESAVTEKKPPPPSQFDESRRLFQRLWTDEDEIELLQGFLDYTSSKTTSNS SSSHHHHHDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVMNKISSGKDFSFKS PHDQATFEISRKIWSNCVGKVEDNVLDDDENNNNNNVNLIDESGEKKNFTPKSAASKK RSRSKGGKMEEKRVLNDGFVITYNNNNNNNLNNRSTNDNGSVEGFGGGGGGGNVAGVI EETVRSCLTPLFKELLGSVIGGGGGGCGGRGISGLAMNAMPLNFGGSMNFGGGGGSGE LMDERWRKQQILELEVYSKRLELVQDQIKAALEELRSMGG" mobile_element 38135087..38136067 /note="source:CACAO_MITE_S250_scaffold_10 2 946" /mobile_element_type="transposon:TIR/MITE" mobile_element 38136218..38136574 /note="source:CACAO_PIF_E119_scaffold_3 4315 4657" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 38136746..38137900 /locus_tag="TCM_026409" /note="dbxref CacaoGD:Thecc1EG026409" mRNA 38136746..38137900 /locus_tag="TCM_026409" /product="Rubredoxin-like superfamily protein" /inference="alignment:exonerate-protein:2:frave:gene16485" /inference="similar to AA sequence:Phytozome:POPTR_0005s05080.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaB_g13343t00001" CDS 38136947..38137564 /locus_tag="TCM_026409" /codon_start=1 /product="Rubredoxin-like superfamily protein" /protein_id="EOY11146.1" /db_xref="Phytozome:POPTR_0005s05080.1" /db_xref="TAIR:AT1G54500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HTU5" /translation="MASATTRLTFSFHHLTQASPKPQKPHLFLCPKLLPTISLTTKKP RGKQLHFTIHSVDVSKEDSQDTPRASDQQENQPPPPPPSQESGAKEKKFDKRRLEEKF AVLNTGIYECRSCGFKYDEAVGDPSYPIAPGLQFDKLPEDWRCPTCGAAQSFFESKSV EIAGFAQNQQFGLGGNALTSGQKALLIYGSLFFFFLLFLSGYFLQ" gene complement(38138545..38147941) /locus_tag="TCM_026410" /note="dbxref CacaoGD:Thecc1EG026410" mRNA complement(join(38138545..38140213,38140521..38140603, 38140789..38140864,38140951..38141055,38141139..38141290, 38141433..38141507,38141592..38141632,38141720..38141796, 38141915..38142043,38142686..38142786,38142860..38142955, 38143507..38143587,38144336..38144422,38145218..38145295, 38145379..38145543,38145649..38145795,38145887..38145949, 38146059..38146178,38146335..38146526,38146605..38146681, 38146769..38146871,38147446..38147941)) /locus_tag="TCM_026410" /product="Exoribonuclease 4 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30128.m008637.2" /inference="similar to AA sequence:ricco:30128.m008637" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1307t6" mRNA complement(join(38139135..38140213,38140521..38140603, 38140789..38140864,38140951..38141055,38141139..38141290, 38141433..38141507,38141592..38141632,38141720..38141796, 38141915..38142043,38142686..38142756,38142860..38142955, 38143507..38143587,38144336..38144422,38145218..38145295, 38145379..38145543,38145649..38145795,38145887..38145949, 38146059..38146178,38146335..38146526,38146605..38146681, 38147446..38147875)) /locus_tag="TCM_026410" /product="5'-3' exoribonuclease 4 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30128.m008637.2" /inference="similar to AA sequence:ricco:30128.m008637" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1307t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1307t6" CDS complement(join(38139496..38140213,38140521..38140603, 38140789..38140864,38140951..38141055,38141139..38141290, 38141433..38141507,38141592..38141632,38141720..38141796, 38141915..38142043,38142686..38142786,38142860..38142955, 38143507..38143587,38144336..38144422,38145218..38145295, 38145379..38145543,38145649..38145795,38145887..38145949, 38146059..38146178,38146335..38146526,38146605..38146681, 38146769..38146871,38147446..38147652)) /locus_tag="TCM_026410" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30128.m008637" /codon_start=1 /product="Exoribonuclease 4 isoform 1" /protein_id="EOY11147.1" /db_xref="TAIR:AT1G54490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FQ04" /translation="MGVPAFYRWLADRYPQSIADVIEEEPREDGLGNQIPVDVSKPNP NGLEFDNLYLDINGIIHPCFHPDGKPAPATYDDVFKSIFDYIDHLFSLVRPRKLLYMA IDGVAPRAKMNQQRTRRFRAAKDAAEAAAEEERLKKEFEEEGKALLPKEKPETCDSNV ITPGTPFMAVLSVALQYYLQSRLNHNPGWRNTKVILSDANAPGEGEHKIMSYIRLQRN LPGFNPNTQHCLYGLDADLIMLSLATHEVHFSILREVITLPGQQEKCFLCGQVGHLAA ECHGKPDNGTEDRNAVDDTPIHKKKYQFLNIWVLREYLQYDLEIPNPPFEINFERIVD DFVFLCFFVGNDFLPHMPTLEIREGAINLLMQVYKREFSAMGGYLTDAGEVLLDRVEC FIQSVAVHEDQIFQKRTRIQQAFENNEQMKLKARGESSEEAQAPVVDKIKLGEPGYKE RYYAEKFNVSNPVEIEEVKRDVISNSCLFSLQVLKYVEGLCWVCRYYYQGVCSWQWFY PYHYAPFASDLKDLSDLEITFFIGEPFKPFDQLMGTLPAASSGALPDRYGKLMTDPSS PIYKFYPSDFEIDMHGKRFAWQGVVKLPFIDEKKLLAATRKLEDTLTVEEQFRNSVML DLLYVHRLHPLASLVFSYYQIYCQLRPHERFVWPIDTNTSGGMNGFLWLSERNGWQGV VPSPVKGLPYIESNQVLNVTYLNPSCHKHIPELPEGVMIPKKVLTPLDIKPLPVLWHE DNGGRRQQGRDRPRVPGAIVGPQLGEAAHRLVKNTLNIKSNGSSSGWGEQPPIFNISN NYSSIRPRPAGPSGYERGFFDDPNHYYSSRPRPAGPPGYERGYGDNLNYYGQYNNPQG IMGNPRHPSSNGMQSIRNNFRAQDRLQNQERHHDLGTAMSALTLDGSAKGRAHVEMSS QMPNSGYPQNLGHRSEQNSGALPKPPTKWINKPVNVNTGTYLKQENASSVAYEKQMKK VYQIKTRPQEMTGPENQQ" CDS complement(join(38139496..38140213,38140521..38140603, 38140789..38140864,38140951..38141055,38141139..38141290, 38141433..38141507,38141592..38141632,38141720..38141796, 38141915..38142043,38142686..38142756,38142860..38142955, 38143507..38143587,38144336..38144422,38145218..38145295, 38145379..38145543,38145649..38145795,38145887..38145949, 38146059..38146178,38146335..38146526,38146605..38146658)) /locus_tag="TCM_026410" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30128.m008637" /codon_start=1 /product="5'-3' exoribonuclease 4 isoform 2" /protein_id="EOY11148.1" /db_xref="TAIR:AT1G54490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FQ04" /translation="MNQQRTRRFRAAKDAAEAAAEEERLKKEFEEEGKALLPKEKPET CDSNVITPGTPFMAVLSVALQYYLQSRLNHNPGWRNTKVILSDANAPGEGEHKIMSYI RLQRNLPGFNPNTQHCLYGLDADLIMLSLATHEVHFSILREVITLPGQQEKCFLCGQV GHLAAECHGKPDNGTEDRNAVDDTPIHKKKYQFLNIWVLREYLQYDLEIPNPPFEINF ERIVDDFVFLCFFVGNDFLPHMPTLEIREGAINLLMQVYKREFSAMGGYLTDAGEVLL DRVECFIQSVAVHEDQIFQKRTRIQQAFENNEQMKLKARGESSEEAQAPVVDKIKLGE PGYKERYYAEKFNVSNPVEIEEVKRDVVLKYVEGLCWVCRYYYQGVCSWQWFYPYHYA PFASDLKDLSDLEITFFIGEPFKPFDQLMGTLPAASSGALPDRYGKLMTDPSSPIYKF YPSDFEIDMHGKRFAWQGVVKLPFIDEKKLLAATRKLEDTLTVEEQFRNSVMLDLLYV HRLHPLASLVFSYYQIYCQLRPHERFVWPIDTNTSGGMNGFLWLSERNGWQGVVPSPV KGLPYIESNQVLNVTYLNPSCHKHIPELPEGVMIPKKVLTPLDIKPLPVLWHEDNGGR RQQGRDRPRVPGAIVGPQLGEAAHRLVKNTLNIKSNGSSSGWGEQPPIFNISNNYSSI RPRPAGPSGYERGFFDDPNHYYSSRPRPAGPPGYERGYGDNLNYYGQYNNPQGIMGNP RHPSSNGMQSIRNNFRAQDRLQNQERHHDLGTAMSALTLDGSAKGRAHVEMSSQMPNS GYPQNLGHRSEQNSGALPKPPTKWINKPVNVNTGTYLKQENASSVAYEKQMKKVYQIK TRPQEMTGPENQQ" gene complement(38148754..38149432) /locus_tag="TCM_026411" /note="dbxref CacaoGD:Thecc1EG026411" mRNA complement(38148754..38149432) /locus_tag="TCM_026411" /product="Heat stable protein 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma04g08730.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021439t1" /inference="similar to AA sequence:Phytozome:Glyma04g08730.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS complement(38149037..38149366) /locus_tag="TCM_026411" /note="paralog of Thecc1EG021439t1" /codon_start=1 /product="Heat stable protein 1" /protein_id="EOY11149.1" /db_xref="Phytozome:Glyma04g08730.1" /db_xref="TAIR:AT3G17210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SYF3" /translation="MEEAKGVVKHVLLAKFKDETTAEKIEELIKGYANLVNLIEPMKA FQWGKDVSIENLHQGFTHVFESTFESTEGIAEYVAHPVHVQFANLFLGHLEKVLVIDY KPTIARC" gene 38149769..38154709 /locus_tag="TCM_026412" /note="dbxref CacaoGD:Thecc1EG026412" mRNA join(38149769..38149994,38151503..38153175, 38153448..38153557,38153774..38154709) /locus_tag="TCM_026412" /product="Transcription factor jumonji family protein / zinc finger family protein" /inference="alignment:exonerate- protein:2:Phytozome:Sb10g009710.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026950t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s43140.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.13 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10871t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10875t1" CDS join(38151506..38153175,38153448..38153557, 38153774..38153823) /locus_tag="TCM_026412" /note="paralog of Thecc1EG026950t1" /codon_start=1 /product="Transcription factor jumonji family protein / zinc finger family protein" /protein_id="EOY11150.1" /db_xref="Phytozome:POPTR_0001s43140.1" /db_xref="TAIR:AT1G30810.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I3H0" /translation="MEQLKKMSARWVPDQACRPIIDDAAVFYPTVEEFEDTLAYIEKI RPEAESYGICRIVPPPSWTPPCLLKDKDIWEHAKFSTRVQQVDLLQNREPMRKKSRSR KRKRSRHSRMGATGRRANSSSESKITYEADEQFGFHSGLDFTLEEYQRYADEFKEMYF RRDSKPRVDEYRKWEPSWEDIEGEYWRIVEQPTDEVQVYYGADLETGTFGSGFPKASS MLTGTGSDAYIYAMSGWNLNNFPRLPGSVLSFEGCDISGVVVPWLYVGMCFSSFCWHV EDHHLYSLNYMHWGDPKIWYGVPGSHASSLEAAMRKHLPDLFEEQPDLLHGLVTQLSP SVLKAEGVPVYRAVQRSGEFVLTFPRGYHSGFNCGFNCAEAVNVAPVDWLEHGQHAVE LYSEQHRKTSLSHDKLLLGSARQAIKALRELFVLGRETPGNLRWNLVCGKDGMLSKAV RMRVQMEEKRVKRLPPHLPLLKMEKDFDLENERECFSCFYDLHLSACSCKCSPERFAC LKHVKNFCSCQDEDRFVLLRYTIYELQMLVKALEGGLDAVKVWASEDLGPKNNSVTDV ETLLNFFKQEKICGFDEEREPDLKRIKIVTPTPHQDQEYQSNK" gene 38155354..38160470 /locus_tag="TCM_026413" /note="dbxref CacaoGD:Thecc1EG026413" mRNA join(38155354..38155576,38156116..38156168, 38156273..38156382,38156533..38156590,38157292..38157555, 38157641..38157778,38157901..38157952,38158965..38159044, 38159289..38159348,38159504..38159584,38160006..38160470) /locus_tag="TCM_026413" /product="Cysteine synthase isoform 1" /inference="alignment:exonerate- protein:2:ricco:30128.m008638" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020629t1" /inference="similar to AA sequence:ricco:30128.m008638" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:PASA:2:TSA:puevd3b025550t1a2; alternateUTRof:Thecc1EG026413t1; inference alignment:Newbler:10:TSA:cgbaP1_g03323t00001" mRNA join(38155354..38155547,38156116..38156168, 38156273..38156382,38156533..38156590,38157292..38157555, 38157641..38157778,38157901..38157952,38158965..38159044, 38159289..38159348,38159504..38159584,38160006..38160421) /locus_tag="TCM_026413" /product="Cysteine synthase isoform 1" /inference="alignment:exonerate- protein:2:ricco:30128.m008638" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020629t1" /inference="similar to AA sequence:ricco:30128.m008638" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03323t00001" CDS join(38156130..38156168,38156273..38156382, 38156533..38156590,38157292..38157555,38157641..38157778, 38157901..38157952,38158965..38159044,38159289..38159348, 38159504..38159584,38160006..38160098) /locus_tag="TCM_026413" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30128.m008638; paralog of Thecc1EG020629t1" /codon_start=1 /product="Cysteine synthase isoform 1" /protein_id="EOY11151.1" /db_xref="TAIR:AT4G14880.4" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PA30" /translation="MEEKSLIAKDVTELVGKTPLVYLNNVVDGCVARIAAKLEAMEPC SSVKDRIGYSMIADAEEKGLIKPGESILIEPTSGNTGIGLAFMAAAKGYRLIITMPSS MSLERRMVLRAFGAELVLTDPARGMKGAVQKAEEIMEKTPNSYILQQFENPANPKIHY EATGPEIWKGTGGKVDFLVSGIGTGGTVTGAGKYLREQNSDVKLIGVEPVESAVLSGG KPGPHKIQGIGAGFIPGVLEVNLLDEVVQVSSEEAIETAKQLALKEGLLVGISSGAAA AAAIEIAKRPENAGKLIVVVFPSFGERYLSSVLFESVKREAENMVFEP" CDS join(38156130..38156168,38156273..38156382, 38156533..38156590,38157292..38157555,38157641..38157778, 38157901..38157952,38158965..38159044,38159289..38159348, 38159504..38159584,38160006..38160098) /locus_tag="TCM_026413" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30128.m008638; paralog of Thecc1EG020629t1" /codon_start=1 /product="Cysteine synthase isoform 1" /protein_id="EOY11152.1" /db_xref="TAIR:AT4G14880.4" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PA30" /translation="MEEKSLIAKDVTELVGKTPLVYLNNVVDGCVARIAAKLEAMEPC SSVKDRIGYSMIADAEEKGLIKPGESILIEPTSGNTGIGLAFMAAAKGYRLIITMPSS MSLERRMVLRAFGAELVLTDPARGMKGAVQKAEEIMEKTPNSYILQQFENPANPKIHY EATGPEIWKGTGGKVDFLVSGIGTGGTVTGAGKYLREQNSDVKLIGVEPVESAVLSGG KPGPHKIQGIGAGFIPGVLEVNLLDEVVQVSSEEAIETAKQLALKEGLLVGISSGAAA AAAIEIAKRPENAGKLIVVVFPSFGERYLSSVLFESVKREAENMVFEP" gene complement(38160797..38169802) /locus_tag="TCM_026417" /note="dbxref CacaoGD:Thecc1EG026417" mRNA complement(join(38160797..38161278,38161372..38161548, 38161896..38161945,38162057..38162125,38163033..38163131, 38163213..38163291,38163471..38163571,38163779..38163847, 38164135..38164175,38164454..38165625,38165700..38165803, 38166202..38166624,38168066..38168946,38169551..38169802)) /locus_tag="TCM_026417" /product="EDR1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0030s00300.1" /inference="similar to AA sequence:Phytozome:POPTR_0030s00300.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10944t3" mRNA complement(join(38160800..38161278,38161372..38161548, 38161896..38161945,38162057..38162125,38163033..38163131, 38163213..38163293,38163471..38163571,38163777..38163847, 38164135..38164178,38164454..38165625,38165700..38165803, 38166202..38166624,38168066..38168645)) /locus_tag="TCM_026417" /product="Kinase superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0030s00300.1" /inference="similar to AA sequence:Phytozome:POPTR_0005s04910.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10944t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10944t3" CDS complement(join(38161143..38161278,38161372..38161548, 38161896..38161945,38162057..38162125,38163033..38163131, 38163213..38163291,38163471..38163571,38163779..38163847, 38164135..38164175,38164454..38165625,38165700..38165803, 38166202..38166624,38168066..38168533)) /locus_tag="TCM_026417" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="EDR1 isoform 1" /protein_id="EOY11153.1" /db_xref="Phytozome:POPTR_0030s00300.1" /db_xref="TAIR:AT1G08720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D2DF33" /translation="MKKREKMKHIFKKLHIGSSHEPNRTAINDTSPSPSASCATDHQQ TMSGNSPGSPSTTSMSSSPVTTTTVPVSTSMGLSTQTPTLAANNRASDYMLTEEEFQV QLALAISASNSEDPEKDQIRAATLLSLGSHHRMDLGLGRDKDDVAAEVLARQYWEYNV LDYEERVVDGFYDVYGLSTDSGIQGKMPSLADLETNLGNSGFEVVIVNRTVDPALEEL LQIVHCIALDCPATNVGILVQRLAELVTGHMGGPVKDANVILARWTERSTELRTSRHT SVLPIGSINIGLSRHRALLFKVLADSIRLPCRLVKGSHYTGVEDDAVNIIKLEDEREF LVDLMAAPGTLIPADILSVKDTTFKPYNPIISNISTLQSSDDGVYSRAKPLNGEGSSQ NPAINNSLPLDWGSTSGNAESLPSLSGASGDSGVGSSGLSNRVTPNQLDHLPSTAIGT SVYKGSRGTNVVGDGMRKNVNVVPYGQSSQEDPKNLFADLNPFQIKGTGKSSLQNKPT ETKADEFQRQRNNVVVGRPPVPLMWKNRPAYNEVPQKKDYNYMEGLFPKINREPNDFN QSSSASTSSTKPEKVYPHGFNSPGDFDISNRDNKIRSSSSGTGSSLASTTSQFNSSPL AEDAGTEFKEENLRNGQDLQNNTGNLANEQDNEIGFHDHRKYTQERYTGNNLKLKDRE NLSSSVDSSIGRVDQLFDDADVGECEIPWEDLDIGERIGLGSYGEVYHADWNGTEVAV KKFLDQDFSGAALAEFKREVRIMRRLRHPNVVLFMGAVTRPPSLSIITEFLPRGSLYK ILNRPQCQIDEKRRIKMALDVARGMNCLHTSIPTIVHRDLKSPNLLVDKNWTVKVCDF GLSRLKHNTFLSSKSTAGTPEWMAPEVLRNEPSNEKCDVYSFGVILWELATLRLPWSG MNPMQVVGAVGFQNRRLDIPKEVDPLVARIIWECWQTDPNLRPSFAQLAVALKPLQRL VIPSHQDQSSSPLPQEISVNSTP" CDS complement(join(38163562..38163571,38163777..38163847, 38164135..38164178,38164454..38165625,38165700..38165803, 38166202..38166624,38168066..38168533)) /locus_tag="TCM_026417" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Kinase superfamily protein isoform 2" /protein_id="EOY11154.1" /db_xref="Phytozome:POPTR_0005s04910.1" /db_xref="TAIR:AT1G08720.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D2DF33" /translation="MKKREKMKHIFKKLHIGSSHEPNRTAINDTSPSPSASCATDHQQ TMSGNSPGSPSTTSMSSSPVTTTTVPVSTSMGLSTQTPTLAANNRASDYMLTEEEFQV QLALAISASNSEDPEKDQIRAATLLSLGSHHRMDLGLGRDKDDVAAEVLARQYWEYNV LDYEERVVDGFYDVYGLSTDSGIQGKMPSLADLETNLGNSGFEVVIVNRTVDPALEEL LQIVHCIALDCPATNVGILVQRLAELVTGHMGGPVKDANVILARWTERSTELRTSRHT SVLPIGSINIGLSRHRALLFKVLADSIRLPCRLVKGSHYTGVEDDAVNIIKLEDEREF LVDLMAAPGTLIPADILSVKDTTFKPYNPIISNISTLQSSDDGVYSRAKPLNGEGSSQ NPAINNSLPLDWGSTSGNAESLPSLSGASGDSGVGSSGLSNRVTPNQLDHLPSTAIGT SVYKGSRGTNVVGDGMRKNVNVVPYGQSSQEDPKNLFADLNPFQIKGTGKSSLQNKPT ETKADEFQRQRNNVVVGRPPVPLMWKNRPAYNEVPQKKDYNYMEGLFPKINREPNDFN QSSSASTSSTKPEKVYPHGFNSPGDFDISNRDNKIRSSSSGTGSSLASTTSQFNSSPL AEDAGTEFKEENLRNGQDLQNNTGNLANEQDNEIGFHDHRKYTQERYTGNNLKLKDRE NLSSSVDSSIGRVDQLFDDADVGECEIPWEDLDIGERIGLVGSYGEVYHADWNGTEVA VKKFLDQDFSGAALAEFKREVCE" gene complement(38172525..38174476) /locus_tag="TCM_026419" /note="dbxref CacaoGD:Thecc1EG026419" mRNA complement(38172525..38174476) /locus_tag="TCM_026419" /product="Glyoxal oxidase-related protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s04920.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034166t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s04920.1" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete" CDS complement(38172709..38174385) /locus_tag="TCM_026419" /note="paralog of Thecc1EG034166t1" /codon_start=1 /product="Glyoxal oxidase-related protein" /protein_id="EOY11155.1" /db_xref="Phytozome:POPTR_0005s04920.1" /db_xref="TAIR:AT3G57620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9REU4" /translation="MIKSLLCSLSFSYLFSLVTSQVLPLNPAGRQGAWQLLHASVGIS AMHMQLLHNNKVIIFDRTDFGPSNLSLPSGLCRIDPSDIVLQTDCTAHSILYDISTNA FRPLMVQTDTWCSSGAVLPNGTLVQTGGYNDGDRNIRTFTPCTDEYCDWIEFPQSLLQ RRWYASNQILPDGRIIIVGGRRQFNYEFYPQNIEGKSSSSSTDHIFGLNFLRETNDYQ MENNLYPFLHLLPDGNLFIFANTRSILLDYNQNRVVKEFPQIPGGDPRNYPSSGSSVL LPLDDQNEAIEPEIMVCGGAPKGSFTQATQGNFIRATSTCGRLKVSHANPSWVMEDMP VPRVMGDMILLPSGDVLIINGAEMGTAGWELGRGPVTRPIIYRTSDDRPDWRFSVMSP SPRPRLYHSSATLLTDGRILVGGSNPHVFYNFTNVEFPTDLSLESFSPPYLSPEYDPI RPQILSLDEKIRYGKSFWLSFSVKDYLTASVLSVRIVAPSFTTHSFAMNQRMVVLKIV GVTTLLPPAPYAYGLSMVGPSTAAIAPPGYYLLFVLHAGIPSSGMWVKIE" gene complement(38174790..38178432) /locus_tag="TCM_026420" /note="dbxref CacaoGD:Thecc1EG026420" mRNA complement(join(38174790..38175233,38176124..38176231, 38176825..38176916,38177022..38177371,38178195..38178432)) /locus_tag="TCM_026420" /product="Pre-rRNA-processing protein TSR2, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0030s00320.1" /inference="similar to AA sequence:Phytozome:POPTR_0030s00320.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g09294t00001" CDS complement(join(38175015..38175233,38176124..38176231, 38176825..38176916,38177022..38177205)) /locus_tag="TCM_026420" /codon_start=1 /product="Pre-rRNA-processing protein TSR2, putative" /protein_id="EOY11156.1" /db_xref="Phytozome:POPTR_0030s00320.1" /db_xref="TAIR:AT5G27990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6JJ66" /translation="METKKLTAESTLIFQEGIGLILSRWWALTAAVENEWGGRDSRGK ANMLYSDVISFFTNTKRAEPLYIDDLENILREGLHSLNTDVDDGSIEEVAEKLMIMHE ECLEGNYQSVEKLRTTNPPPVAHVRPSTEEDEDDDNDDDEDDSMDADNTTNMMVDVPN SHSSLNPVSMPTDEPGPNQAAEAADGWVVVSSRRNKGRRN" mobile_element complement(38177350..38177473) /note="source:scaffold_7_CACTA_0795 3556 3692" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(38177931..38178010) /note="source:scaffold_7_CACTA_0795 3460 3533" /mobile_element_type="transposon:TIR/CACTA" gene 38178791..38179950 /locus_tag="TCM_026421" /note="dbxref CacaoGD:Thecc1EG026421" mRNA join(38178791..38179145,38179258..38179560, 38179643..38179950) /locus_tag="TCM_026421" /product="Seed maturation protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s04950.1.2" /inference="similar to AA sequence:Phytozome:POPTR_0005s04950.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10889t1" CDS join(38178921..38179145,38179258..38179560, 38179643..38179804) /locus_tag="TCM_026421" /codon_start=1 /product="Seed maturation protein, putative" /protein_id="EOY11157.1" /db_xref="Phytozome:POPTR_0005s04950.1" /db_xref="TAIR:AT3G22490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P09444" /translation="MPVAPKDVAMMQTAENAMLGHNPKGYAASAMQSAAMQNEGAGFV CHEDLNAESGVTIKETELPGKRVITESVGDEVVGQYSQAAPLSSGQFSASQQGGSTGD AITIGEALEATALTAGKKPVEWSDAAAIQAAEVRATGRTSIMPGGVAAAAQSAATLNA RATRDEDKTKLGDILSNATTKLPSDKPATRRDAERVTGAEMRNDPNLTTHPAGVAASV AAAARLNQSHK" gene complement(38180418..38196746) /locus_tag="TCM_026422" /note="dbxref CacaoGD:Thecc1EG026422" mRNA complement(join(38180418..38180736,38180903..38181104, 38181214..38181338,38181763..38181902,38182094..38182412, 38182697..38182925,38183013..38183199,38183976..38184097, 38184218..38184341,38184446..38184558,38184643..38184758, 38184863..38184948,38185027..38185155,38185817..38185998, 38186090..38186229,38186362..38186420,38186567..38186615, 38186818..38186870,38186961..38187092,38187188..38187319, 38187410..38187453,38187704..38187890,38188194..38188280, 38188568..38188627,38188707..38188772,38188906..38188993, 38189887..38189984,38190263..38190320,38190417..38190544, 38190629..38190777,38191586..38191649,38192071..38192140, 38192690..38192742,38192855..38192935,38193389..38193490, 38193599..38193655,38193756..38193810,38193887..38193942, 38194125..38194245,38194489..38194644,38194767..38194840, 38195311..38195400,38195519..38195704,38196247..38196746)) /locus_tag="TCM_026422" /product="ARM repeat superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0030s00330.1" /inference="similar to AA sequence:Phytozome:POPTR_0030s00330.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10898t3" CDS complement(join(38180649..38180736,38180903..38181104, 38181214..38181338,38181763..38181902,38182094..38182412, 38182697..38182925,38183013..38183199,38183976..38184097, 38184218..38184341,38184446..38184558,38184643..38184758, 38184863..38184948,38185027..38185155,38185817..38185998, 38186090..38186229,38186362..38186420,38186567..38186615, 38186818..38186870,38186961..38187092,38187188..38187319, 38187410..38187453,38187704..38187890,38188194..38188280, 38188568..38188627,38188707..38188772,38188906..38188993, 38189887..38189984,38190263..38190320,38190417..38190544, 38190629..38190777,38191586..38191649,38192071..38192140, 38192690..38192742,38192855..38192935,38193389..38193490, 38193599..38193655,38193756..38193810,38193887..38193942, 38194125..38194245,38194489..38194644,38194767..38194840, 38195311..38195400,38195519..38195704,38196247..38196351)) /locus_tag="TCM_026422" /codon_start=1 /product="ARM repeat superfamily protein" /protein_id="EOY11158.1" /db_xref="Phytozome:POPTR_0030s00330.1" /db_xref="TAIR:AT5G27970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I8A3" /translation="MAFMAVLESDLRALSAEARRRYPSVKDAAEHAILKLRTLSSPSE ISHNEDIVRIFLMACEVKTVKLSVIGLSCLQKLISHDAVAPSVLNEILPTLKDHAEMP DESVQLKTLQTILIIFQSRLHPESEENMAQALGICLRLLENNRSSDSVRNTAAATFRQ AVALVFDHVVHTETLPTEKFGSGNYIFRASSVTGDVSRSMNNSESLEHNFASGKPLLM RETTTSAGKLGLRLLEDLTALAAGGSACWLRVSSLQRTFVLDILEFILSNYVAMFKIL VSYEQVLRHQICSLLMTSLRTNSELEGEVGEPYFRRLVLRSVAHIIRLYSSSLITECE VFLSMLIKLTFLDLPLWHRILVLEILRGFCVEARTLRILFQNFDMHPKNTNVVEGMIK ALARVVSSVQFLETSEESLAAVAGMFSSKAKGIEWSLDNDASNAAVLVASEAHAISLA IEGLLGVVFTVASLTDEAVDAGELESPRCDYVPSAKCGGKTAVLCISMVDSLWLTILD ALSLILARSQGEAIVLEILKGYQAFTQACGVLHAVEPLNSFLASLCKFTINFPNEVER RSTALQSPGSKRTDLIADQRDSIILTPKNVQALRTLFNIAHRLHNVLGPSWVLVLETL SALDRAIHSPHATTQEVSTSVPRLARESSGQYSDFSILSSLNSQLFESSALMHISAVK SLLSALCQLSHQCMVETSSGFGPATSQKIGSISFSVERMISILVNNLHRVEPLWDQVV GHFLELADNSNQHLRNMALDALDKSICAVLGSEQFEDHALSRSNENSKDVGCKETELR SLESAVISPLRVLYSSSQSIDVRAGSLKILLHVLERCGEKLRYTWPNILELLRSVADA SEKDLVTLGFQSLRVIMNDGLATIPPDCLNVCIDVTGAYGAQKTELNISLTAIGLLWT TTDFIVKGLLHGSSEEKEKGIVKVNSVSNKVDGQKKEEQAENISSDINGQSPSINIAD RDKLIISVFSLLQKLGDDERPEVRNSAIRTLFQILGGHGQKLSKSMWEDCLWNYVFPT LDSASHMAATSSKDEWQGKELGIRAGKAVHMLIHHSRNTAQKQWDETLVLVLGGIARL LRSFFPFLSSLNNFWSGWESLLLFVKDSIFNGSKEVSLAAINCLQTTVLGHCSKGNLP MPYLVSVIDVYEVVLQKSPNYSSGATNKVKQEVLHGLGELYVQAQRMFDDHMYTRLLA IIGLEIKQTVTTSDNCEAEFGQVPHVLRTVLEVLPMLCPAEHLSSMWLILLRELLQYL PGPDSPPQSEEEEAGQASTSDHTPDVPVKMKYETPNGTASASVQKAEVLSPTSRSAAG ATVNIPSYLFAEKLIPIVVDLMLKAPAVGKYIIFPEVLQSLGRSMTTRRDNPDGSLWR LAVEGFNRILVDDVSKLAVECDSKISKPARLRIWKEVADIYEIFLVGYCGRALPSNSL PAVTLKDDESLEMTILNILGEKILKSPIDAPIEILQRLVSTLDRCASRTCSLPVETVE LMPLHCSRFSLTCLQTLFSLSSFDEEVGNWNVARSEVSKIAIMVLVTRCKYILNRFLV DEKEIGDRPLPTARLEEVIFVLQELACLVIHLDTASVLPLHPRLKYGLAEGKLDKRPH LLVLFPSFCELITSREARLRELVQVLLKLIAKELTLEKVITGC" gene complement(38197807..38201895) /locus_tag="TCM_026423" /note="dbxref CacaoGD:Thecc1EG026423" mRNA complement(join(38197807..38197852,38197868..38198294, 38198990..38199070,38199210..38199226,38199617..38199697, 38200034..38200085,38200226..38200363,38200442..38200705, 38200972..38201029,38201131..38201240,38201343..38201405, 38201697..38201805)) /locus_tag="TCM_026423" /product="Cysteine synthase D1 isoform 3" /inference="alignment:exonerate- protein:2:ricco:30128.m008639" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026413t2" /inference="similar to AA sequence:ricco:30128.m008642" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1357t1; inference alignment:Newbler:10:TSA:cgbaB_g08060t00001" mRNA complement(join(38197883..38198294,38198990..38199070, 38199210..38199269,38199618..38199697,38200034..38200085, 38200226..38200363,38200442..38200705,38200972..38201029, 38201131..38201240,38201343..38201405,38201821..38201895)) /locus_tag="TCM_026423" /product="Cysteine synthase D1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30128.m008639" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026413t2" /inference="similar to AA sequence:Phytozome:Glyma20g37280.3" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b025556t1a2; alternateUTRof:Thecc1EG026423t1; inference alignment:Newbler:10:TSA:cgbaB_g08060t00001" mRNA complement(join(38197935..38198294,38198990..38199070, 38199210..38199269,38199618..38199697,38200034..38200085, 38200226..38200363,38200442..38200705,38200972..38201029, 38201131..38201240,38201343..38201405,38201697..38201818)) /locus_tag="TCM_026423" /product="Cysteine synthase D1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30128.m008639" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026413t2" /inference="similar to AA sequence:Phytozome:Glyma20g37280.3" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08060t00001; inference alignment:Newbler:10:TSA:cgbaB_g08060t00001" CDS complement(join(38198205..38198294,38198990..38199070, 38199210..38199269,38199618..38199697,38200034..38200085, 38200226..38200363,38200442..38200705,38200972..38201029, 38201131..38201240,38201343..38201381)) /locus_tag="TCM_026423" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG026413t2" /codon_start=1 /product="Cysteine synthase D1 isoform 1" /protein_id="EOY11159.1" /db_xref="Phytozome:Glyma20g37280.3" /db_xref="TAIR:AT3G04940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PA30" /translation="MEEKCAIKKDVSELIGNTPMVYLNNIVDVCVARIAAKLELLEPC SSVKDRIAYSMIKDAEDKGLITPGKNVLIEPTSGNTGIGMAFIGAARGYKVIVTMPAS VSIERRIVLRALGAEVYLTNPVKGIKGVIDKAEELVNNTPNSHMLRQFENPANPQIHY DATGPEIWKDSEGKVDALVAGIGTGGTITGAGKFLKEKNSEIKVYGVEPVESAVLNGG KPGPHLIQGIGAGIVPEVLDVGILDEVVQVSGEEAIETAKKLALKEGLLVGISSGAAA AAAIKVAKRPENTGKLIVVIFPSAGERYLSSALFESFRQEAENMTFD" CDS complement(join(38198205..38198294,38198990..38199070, 38199210..38199269,38199618..38199697,38200034..38200085, 38200226..38200363,38200442..38200705,38200972..38201029, 38201131..38201240,38201343..38201381)) /locus_tag="TCM_026423" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG026413t2" /codon_start=1 /product="Cysteine synthase D1 isoform 1" /protein_id="EOY11160.1" /db_xref="Phytozome:Glyma20g37280.3" /db_xref="TAIR:AT3G04940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PA30" /translation="MEEKCAIKKDVSELIGNTPMVYLNNIVDVCVARIAAKLELLEPC SSVKDRIAYSMIKDAEDKGLITPGKNVLIEPTSGNTGIGMAFIGAARGYKVIVTMPAS VSIERRIVLRALGAEVYLTNPVKGIKGVIDKAEELVNNTPNSHMLRQFENPANPQIHY DATGPEIWKDSEGKVDALVAGIGTGGTITGAGKFLKEKNSEIKVYGVEPVESAVLNGG KPGPHLIQGIGAGIVPEVLDVGILDEVVQVSGEEAIETAKKLALKEGLLVGISSGAAA AAAIKVAKRPENTGKLIVVIFPSAGERYLSSALFESFRQEAENMTFD" CDS complement(join(38198205..38198294,38198990..38199070, 38199210..38199226,38199617..38199697,38200034..38200085, 38200226..38200363,38200442..38200705,38200972..38201029, 38201131..38201240,38201343..38201381)) /locus_tag="TCM_026423" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30128.m008642; paralog of Thecc1EG026413t2" /codon_start=1 /product="Cysteine synthase D1 isoform 3" /protein_id="EOY11161.1" /db_xref="TAIR:AT3G04940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PA30" /translation="MEEKCAIKKDVSELIGNTPMVYLNNIVDVCVARIAAKLELLEPC SSVKDRIAYSMIKDAEDKGLITPGKNVLIEPTSGNTGIGMAFIGAARGYKVIVTMPAS VSIERRIVLRALGAEVYLTNPVKGIKGVIDKAEELVNNTPNSHMLRQFENPANPQIHY DATGPEIWKDSEGKVDALVAGIGTGGTITGAGKFLKEKNSEIKVYGVEPVESAVLNGG KPGPHLIQGIGAGIVPEVLDVGILDEVVQVKEGLLVGISSGAAAAAAIKVAKRPENTG KLIVVIFPSAGERYLSSALFESFRQEAENMTFD" mRNA complement(join(38199038..38199070,38199210..38199697, 38200034..38200085,38200226..38200363,38200442..38200705, 38200972..38201029,38201131..38201240,38201343..38201405, 38201697..38201805)) /locus_tag="TCM_026423" /product="O-acetylserine lyase isoform 5" /inference="alignment:exonerate- protein:2:ricco:30128.m008639" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026413t2" /inference="similar to AA sequence:ricco:30128.m008642" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1361t7; inference alignment:Newbler:10:TSA:cgbaB_g08060t00001" mRNA complement(join(38199046..38199269,38199618..38199697, 38200034..38200085,38200226..38200363,38200442..38200705, 38200972..38201029,38201131..38201240,38201343..38201403)) /locus_tag="TCM_026423" /product="Cysteine synthase D1 isoform 4" /inference="alignment:exonerate- protein:2:ricco:30128.m008639" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026413t2" /inference="similar to AA sequence:Phytozome:Glyma10g30140.5" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1326t5; inference alignment:Newbler:10:TSA:cgbaB_g08060t00001" CDS complement(join(38199204..38199269,38199618..38199697, 38200034..38200085,38200226..38200363,38200442..38200705, 38200972..38201029,38201131..38201240,38201343..38201381)) /locus_tag="TCM_026423" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG026413t2" /codon_start=1 /product="Cysteine synthase D1 isoform 4" /protein_id="EOY11162.1" /db_xref="Phytozome:Glyma10g30140.5" /db_xref="TAIR:AT3G04940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PA30" /translation="MEEKCAIKKDVSELIGNTPMVYLNNIVDVCVARIAAKLELLEPC SSVKDRIAYSMIKDAEDKGLITPGKNVLIEPTSGNTGIGMAFIGAARGYKVIVTMPAS VSIERRIVLRALGAEVYLTNPVKGIKGVIDKAEELVNNTPNSHMLRQFENPANPQIHY DATGPEIWKDSEGKVDALVAGIGTGGTITGAGKFLKEKNSEIKVYGVEPVESAVLNGG KPGPHLIQGIGAGIVPEVLDVGILDEVVQVSGEEAIETAKKLALKEGLLV" CDS complement(join(38199528..38199697,38200034..38200085, 38200226..38200363,38200442..38200705,38200972..38201029, 38201131..38201240,38201343..38201381)) /locus_tag="TCM_026423" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:30128.m008642; paralog of Thecc1EG026413t2" /codon_start=1 /product="O-acetylserine lyase isoform 5" /protein_id="EOY11163.1" /db_xref="TAIR:AT3G04940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PA30" /translation="MEEKCAIKKDVSELIGNTPMVYLNNIVDVCVARIAAKLELLEPC SSVKDRIAYSMIKDAEDKGLITPGKNVLIEPTSGNTGIGMAFIGAARGYKVIVTMPAS VSIERRIVLRALGAEVYLTNPVKGIKGVIDKAEELVNNTPNSHMLRQFENPANPQIHY DATGPEIWKDSEGKVDALVAGIGTGGTITGAGKFLKEKNSEIKVYGVEPVESAVLNGG KPGPHLIQGIGAGIVPEVLDVGILDEVVQVSLNSILVKSLCQIIRFCFSPMISYSGKH " gene 38212250..38212650 /locus_tag="TCM_026427" /note="dbxref CacaoGD:Thecc1EG026427" mRNA 38212250..38212650 /locus_tag="TCM_026427" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s04380.1.3" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10990t2" CDS 38212401..38212565 /locus_tag="TCM_026427" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11164.1" /translation="MRCTIAWAWRNPPNTSLSMFLRVALQREHGTHESMYVFKGCITA RARHASYDMF" mobile_element 38213047..38213144 /note="source:INTACT433_F212_scaffold_1-int 3049 3153" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 38213054..38213158 /note="source:scaffold_3_CACTA_0377 2108 2219" /mobile_element_type="transposon:TIR/CACTA" gene 38214878..38217976 /locus_tag="TCM_026428" /note="dbxref CacaoGD:Thecc1EG026428" mRNA join(38214878..38215712,38217819..38217976) /locus_tag="TCM_026428" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.67 coverage" CDS 38215375..38215599 /locus_tag="TCM_026428" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11165.1" /translation="MNKGFKSHHTREVNKKLGHSLCSNSMSPTLHCNSVSEISPAPAY HRRRGRSRRIRSNGRRCILIFAKGVVCIQP" gene 38215657..38219111 /locus_tag="TCM_026429" /note="dbxref CacaoGD:Thecc1EG026429" mRNA join(38215657..38215712,38217822..38219111) /locus_tag="TCM_026429" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc925t3" gene complement(38216811..38219253) /locus_tag="TCM_026430" /note="dbxref CacaoGD:Thecc1EG026430" mRNA complement(join(38216811..38216981,38217948..38218455, 38218726..38219253)) /locus_tag="TCM_026430" /product="Acyl-CoA N-acyltransferases superfamily protein, putative" /inference="alignment:exonerate-protein:2:frave:gene16464" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020651t1" /inference="similar to AA sequence:frave:gene16464" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc852t9" CDS 38217966..38218235 /locus_tag="TCM_026429" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11166.1" /translation="MPTTYTSTKLFFNVSLKFTIFLKLLKLLTTWLLFLVSSAAPSPS SAASFLVAVRLLLPPNVNTIVLKVPLLKRALHLLEQWHSLQESVS" CDS complement(join(38218269..38218455,38218726..38219207)) /locus_tag="TCM_026430" /note="dbxref frave:gene16464; paralog of Thecc1EG020651t1" /codon_start=1 /product="Acyl-CoA N-acyltransferases superfamily protein, putative" /protein_id="EOY11167.1" /db_xref="TAIR:AT3G22560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HTV8" /translation="MEIDLSKITLRPFKLEDADDFLSFAGDEQVTRHLRWKTLTSKEE ALTHIKDVCIPHPWRRSICIEDRSIGFVSIFPFSGDDRCSANFGFGVAVKYWGHGVAT KAVKMAASQFFVDFPGVVRLEAFVDVDNKASQRIVEKAGFQKEGMLRKYAHLKGKLRD LDSMHKTRERATGSKKKAWRKKRKYELGRQPANTKSAQVVKLQDCKENSWGSEAVTRE NPYS" gene complement(38220095..38226158) /locus_tag="TCM_026431" /note="dbxref CacaoGD:Thecc1EG026431" mRNA complement(join(38220095..38221115,38221240..38222051, 38222370..38222697,38223929..38224096,38224171..38224980, 38225846..38226154)) /locus_tag="TCM_026431" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s04900.1" /inference="similar to AA sequence:Phytozome:POPTR_0005s04900.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc241t1; alternateUTRof:Thecc1EG026431t2; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc241t4" mRNA complement(join(38220095..38221115,38221240..38222697, 38223929..38224096,38224171..38224980,38225846..38226154)) /locus_tag="TCM_026431" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s04900.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020661t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s04900.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc241t4; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc241t4" mRNA complement(join(38220095..38221135,38221240..38222697, 38223929..38224096,38224171..38224980,38225846..38226154)) /locus_tag="TCM_026431" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s04900.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020661t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s04900.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc241t2; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc241t4" mRNA complement(join(38220099..38221115,38221240..38222051, 38222370..38222697,38223929..38224096,38224171..38224980, 38225801..38226158)) /locus_tag="TCM_026431" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s04900.1" /inference="similar to AA sequence:Phytozome:POPTR_0005s04900.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc246t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc241t4" mRNA complement(join(38220099..38221115,38221240..38222697, 38223929..38224096,38224171..38224980,38225801..38226158)) /locus_tag="TCM_026431" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s04900.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020661t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s04900.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc246t4; alternateUTRof:Thecc1EG026431t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc241t4" mRNA complement(join(38220099..38221166,38221228..38222697, 38223929..38224096,38224171..38224980,38225801..38226158)) /locus_tag="TCM_026431" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s04900.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020661t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s04900.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc246t3; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc241t4" CDS complement(join(38220873..38221115,38221240..38222051, 38222370..38222697,38223929..38224096,38224171..38224950)) /locus_tag="TCM_026431" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /protein_id="EOY11169.1" /db_xref="Phytozome:POPTR_0005s04900.1" /db_xref="TAIR:AT1G05460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2DI13" /translation="MSASWKDGWDDECSVIGDKGEIGFIDFADDKSVQSYGLDEKGPV VISVPFPFTQKPQSILVGQTSKWPITLENTTSEPVELWGVRIFCSNPADSFTLSLMEP PSANSNFEHQQRFLEGYSLEDRVLQPHQTLTIWLSCKPKEMGLHTTVVHFDVDDNRIE RVVFLLAEDNVSQSLASAVPYRRAPRRKQFAVDEYVVSSRPARTTSRGYKSKLSEYPI PKNLREIIENKHVPDVIAEGLTKENYAAFFSTLLVMEELHLEEEMRSHSMECVMMRRK GPQFVALEVPGLAERRPSLVHGDFVFAKIASDNSDHSVYQGYIYRVEADEVLLKFADK FHTLHWDGNLYNVQFTYNRVNMRRLYQAVEAAETLQDNILFPSQSTKRTLVKTAPFVP CSCTLNVEQMHSVEMILACKGAPPYVIYGPPGTEGVSRGHFSHIFLDEAGQASEPESM IPIANLYRKETVVVLAGDPKQLGPVIFSKDAEAFGLGKSYLERLFECESYYNEDDNFV TKLVRNYRCHPAILDLPSRLFYKGELIACKEDDSFSITSKVDLFPNKEFPVLFFGIQG CDEREGNNPSWFNRIEVSKVVDIINKLRASTDLNEADIGVIAPYRQQVLKIKTVLETW DLPDVKVGSVEQFQGQEREVIIVSTVRSTVKHNEFDRTHCLGFLSNPKRFNVAITRAR SLLIIVGNPHIVCKDPYWEKLLWHCSGNSSYQGCPPPEMQNHEYGESFSGTGLNNEEE DPCSKVEAWNCNFEAEAVPKIPKPVTEEAEGSDGWK" CDS complement(join(38220873..38221115,38221240..38222051, 38222370..38222697,38223929..38224096,38224171..38224950)) /locus_tag="TCM_026431" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /protein_id="EOY11172.1" /db_xref="Phytozome:POPTR_0005s04900.1" /db_xref="TAIR:AT1G05460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F2DI13" /translation="MSASWKDGWDDECSVIGDKGEIGFIDFADDKSVQSYGLDEKGPV VISVPFPFTQKPQSILVGQTSKWPITLENTTSEPVELWGVRIFCSNPADSFTLSLMEP PSANSNFEHQQRFLEGYSLEDRVLQPHQTLTIWLSCKPKEMGLHTTVVHFDVDDNRIE RVVFLLAEDNVSQSLASAVPYRRAPRRKQFAVDEYVVSSRPARTTSRGYKSKLSEYPI PKNLREIIENKHVPDVIAEGLTKENYAAFFSTLLVMEELHLEEEMRSHSMECVMMRRK GPQFVALEVPGLAERRPSLVHGDFVFAKIASDNSDHSVYQGYIYRVEADEVLLKFADK FHTLHWDGNLYNVQFTYNRVNMRRLYQAVEAAETLQDNILFPSQSTKRTLVKTAPFVP CSCTLNVEQMHSVEMILACKGAPPYVIYGPPGTEGVSRGHFSHIFLDEAGQASEPESM IPIANLYRKETVVVLAGDPKQLGPVIFSKDAEAFGLGKSYLERLFECESYYNEDDNFV TKLVRNYRCHPAILDLPSRLFYKGELIACKEDDSFSITSKVDLFPNKEFPVLFFGIQG CDEREGNNPSWFNRIEVSKVVDIINKLRASTDLNEADIGVIAPYRQQVLKIKTVLETW DLPDVKVGSVEQFQGQEREVIIVSTVRSTVKHNEFDRTHCLGFLSNPKRFNVAITRAR SLLIIVGNPHIVCKDPYWEKLLWHCSGNSSYQGCPPPEMQNHEYGESFSGTGLNNEEE DPCSKVEAWNCNFEAEAVPKIPKPVTEEAEGSDGWK" CDS complement(join(38220873..38221115,38221240..38222697, 38223929..38224096,38224171..38224950)) /locus_tag="TCM_026431" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG020661t1" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /protein_id="EOY11168.1" /db_xref="Phytozome:POPTR_0005s04900.1" /db_xref="TAIR:AT1G05460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GYD9" /translation="MSASWKDGWDDECSVIGDKGEIGFIDFADDKSVQSYGLDEKGPV VISVPFPFTQKPQSILVGQTSKWPITLENTTSEPVELWGVRIFCSNPADSFTLSLMEP PSANSNFEHQQRFLEGYSLEDRVLQPHQTLTIWLSCKPKEMGLHTTVVHFDVDDNRIE RVVFLLAEDNVSQSLASAVPYRRAPRRKQFAVDEYVVSSRPARTTSRGYKSKLSEYPI PKNLREIIENKHVPDVIAEGLTKENYAAFFSTLLVMEELHLEEEMRSHSMECVMMRRK GPQFVALEVPGLAERRPSLVHGDFVFAKIASDNSDHSVYQGYIYRVEADEVLLKFADK FHTLHWDGNLYNVQFTYNRVNMRRLYQAVEAAETLQDNILFPSQSTKRTLVKTAPFVP CSCTLNVEQMHSVEMILACKGAPPYVIYGPPGTGKTMTLVEAILQLYTRRKNSRILVC AASNSAADHILERLISNKNVEVKESEIFRLNATSRAYEDVPPDYIRFCYFEASLFKCP PQGALKRYRIIISTYMSSSLLYAEGVSRGHFSHIFLDEAGQASEPESMIPIANLYRKE TVVVLAGDPKQLGPVIFSKDAEAFGLGKSYLERLFECESYYNEDDNFVTKLVRNYRCH PAILDLPSRLFYKGELIACKEDDSFSITSKVDLFPNKEFPVLFFGIQGCDEREGNNPS WFNRIEVSKVVDIINKLRASTDLNEADIGVIAPYRQQVLKIKTVLETWDLPDVKVGSV EQFQGQEREVIIVSTVRSTVKHNEFDRTHCLGFLSNPKRFNVAITRARSLLIIVGNPH IVCKDPYWEKLLWHCSGNSSYQGCPPPEMQNHEYGESFSGTGLNNEEEDPCSKVEAWN CNFEAEAVPKIPKPVTEEAEGSDGWK" CDS complement(join(38220873..38221115,38221240..38222697, 38223929..38224096,38224171..38224950)) /locus_tag="TCM_026431" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG020661t1" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /protein_id="EOY11171.1" /db_xref="Phytozome:POPTR_0005s04900.1" /db_xref="TAIR:AT1G05460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GYD9" /translation="MSASWKDGWDDECSVIGDKGEIGFIDFADDKSVQSYGLDEKGPV VISVPFPFTQKPQSILVGQTSKWPITLENTTSEPVELWGVRIFCSNPADSFTLSLMEP PSANSNFEHQQRFLEGYSLEDRVLQPHQTLTIWLSCKPKEMGLHTTVVHFDVDDNRIE RVVFLLAEDNVSQSLASAVPYRRAPRRKQFAVDEYVVSSRPARTTSRGYKSKLSEYPI PKNLREIIENKHVPDVIAEGLTKENYAAFFSTLLVMEELHLEEEMRSHSMECVMMRRK GPQFVALEVPGLAERRPSLVHGDFVFAKIASDNSDHSVYQGYIYRVEADEVLLKFADK FHTLHWDGNLYNVQFTYNRVNMRRLYQAVEAAETLQDNILFPSQSTKRTLVKTAPFVP CSCTLNVEQMHSVEMILACKGAPPYVIYGPPGTGKTMTLVEAILQLYTRRKNSRILVC AASNSAADHILERLISNKNVEVKESEIFRLNATSRAYEDVPPDYIRFCYFEASLFKCP PQGALKRYRIIISTYMSSSLLYAEGVSRGHFSHIFLDEAGQASEPESMIPIANLYRKE TVVVLAGDPKQLGPVIFSKDAEAFGLGKSYLERLFECESYYNEDDNFVTKLVRNYRCH PAILDLPSRLFYKGELIACKEDDSFSITSKVDLFPNKEFPVLFFGIQGCDEREGNNPS WFNRIEVSKVVDIINKLRASTDLNEADIGVIAPYRQQVLKIKTVLETWDLPDVKVGSV EQFQGQEREVIIVSTVRSTVKHNEFDRTHCLGFLSNPKRFNVAITRARSLLIIVGNPH IVCKDPYWEKLLWHCSGNSSYQGCPPPEMQNHEYGESFSGTGLNNEEEDPCSKVEAWN CNFEAEAVPKIPKPVTEEAEGSDGWK" CDS complement(join(38220998..38221135,38221240..38222697, 38223929..38224096,38224171..38224950)) /locus_tag="TCM_026431" /note="encoded by transcript variant 6; alternatively spliced; paralog of Thecc1EG020661t1" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 6" /protein_id="EOY11173.1" /db_xref="Phytozome:POPTR_0005s04900.1" /db_xref="TAIR:AT1G05460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GYD9" /translation="MSASWKDGWDDECSVIGDKGEIGFIDFADDKSVQSYGLDEKGPV VISVPFPFTQKPQSILVGQTSKWPITLENTTSEPVELWGVRIFCSNPADSFTLSLMEP PSANSNFEHQQRFLEGYSLEDRVLQPHQTLTIWLSCKPKEMGLHTTVVHFDVDDNRIE RVVFLLAEDNVSQSLASAVPYRRAPRRKQFAVDEYVVSSRPARTTSRGYKSKLSEYPI PKNLREIIENKHVPDVIAEGLTKENYAAFFSTLLVMEELHLEEEMRSHSMECVMMRRK GPQFVALEVPGLAERRPSLVHGDFVFAKIASDNSDHSVYQGYIYRVEADEVLLKFADK FHTLHWDGNLYNVQFTYNRVNMRRLYQAVEAAETLQDNILFPSQSTKRTLVKTAPFVP CSCTLNVEQMHSVEMILACKGAPPYVIYGPPGTGKTMTLVEAILQLYTRRKNSRILVC AASNSAADHILERLISNKNVEVKESEIFRLNATSRAYEDVPPDYIRFCYFEASLFKCP PQGALKRYRIIISTYMSSSLLYAEGVSRGHFSHIFLDEAGQASEPESMIPIANLYRKE TVVVLAGDPKQLGPVIFSKDAEAFGLGKSYLERLFECESYYNEDDNFVTKLVRNYRCH PAILDLPSRLFYKGELIACKEDDSFSITSKVDLFPNKEFPVLFFGIQGCDEREGNNPS WFNRIEVSKVVDIINKLRASTDLNEADIGVIAPYRQQVLKIKTVLETWDLPDVKVGSV EQFQGQEREVIIVSTVRSTVKHNEFDRTHCLGFLSNPKRFNVAITRARSLLIIVGNPH IVCKVLILICRTLIGRSCCGIVLETAPTRAAPHPKCRTMSMENPFLALA" CDS complement(join(38221158..38221166,38221228..38222697, 38223929..38224096,38224171..38224950)) /locus_tag="TCM_026431" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG020661t1" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 3" /protein_id="EOY11170.1" /db_xref="Phytozome:POPTR_0005s04900.1" /db_xref="TAIR:AT1G05460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GYD9" /translation="MSASWKDGWDDECSVIGDKGEIGFIDFADDKSVQSYGLDEKGPV VISVPFPFTQKPQSILVGQTSKWPITLENTTSEPVELWGVRIFCSNPADSFTLSLMEP PSANSNFEHQQRFLEGYSLEDRVLQPHQTLTIWLSCKPKEMGLHTTVVHFDVDDNRIE RVVFLLAEDNVSQSLASAVPYRRAPRRKQFAVDEYVVSSRPARTTSRGYKSKLSEYPI PKNLREIIENKHVPDVIAEGLTKENYAAFFSTLLVMEELHLEEEMRSHSMECVMMRRK GPQFVALEVPGLAERRPSLVHGDFVFAKIASDNSDHSVYQGYIYRVEADEVLLKFADK FHTLHWDGNLYNVQFTYNRVNMRRLYQAVEAAETLQDNILFPSQSTKRTLVKTAPFVP CSCTLNVEQMHSVEMILACKGAPPYVIYGPPGTGKTMTLVEAILQLYTRRKNSRILVC AASNSAADHILERLISNKNVEVKESEIFRLNATSRAYEDVPPDYIRFCYFEASLFKCP PQGALKRYRIIISTYMSSSLLYAEGVSRGHFSHIFLDEAGQASEPESMIPIANLYRKE TVVVLAGDPKQLGPVIFSKDAEAFGLGKSYLERLFECESYYNEDDNFVTKLVRNYRCH PAILDLPSRLFYKGELIACKEDDSFSITSKVDLFPNKEFPVLFFGIQGCDEREGNNPS WFNRIEVSKVVDIINKLRASTDLNEADIGVIAPYRQQVLKIKTVLETWDLPDVKVGSV EQFQGQEREVIIVSTVRSTVKHNEFDRTHCLGFLSNPKRFNVAITRARSLLIIVGNPH IVCKVFLLGY" gene 38227612..38227966 /locus_tag="TCM_026432" /note="dbxref CacaoGD:Thecc1EG026432" mRNA 38227612..38227966 /locus_tag="TCM_026432" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s03300.1" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2435t1" CDS 38227623..38227859 /locus_tag="TCM_026432" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11174.1" /translation="MFIVECSLTSTLICTKALLRNRRSSVQITKSHPIVSISAVFPAT IFPFAVPHFVAVFCFCLWHTFSICTSSKHTALIK" gene complement(38228860..38232755) /locus_tag="TCM_026433" /note="dbxref CacaoGD:Thecc1EG026433" mRNA complement(join(38228860..38229233,38230018..38230127, 38231114..38231229,38231773..38231934,38232133..38232281, 38232414..38232716)) /locus_tag="TCM_026433" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021889001" /inference="similar to AA sequence:frave:gene16455" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10948t1" CDS complement(join(38229121..38229233,38230018..38230127, 38231114..38231229,38231773..38231934,38232133..38232281, 38232414..38232678)) /locus_tag="TCM_026433" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene16455" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY11175.1" /db_xref="TAIR:AT3G04950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I896" /translation="MLSSRILNNISKRMPSSSSFSLGYAYPEHHLVLPQHRSIFTTSP VHASWMDSIKGVFTGKKTSTDDPKTSAESFTLLRESSAHRSVTLGFADELKNARKLGT FKQYIVGRSSEATFADAFEKQEAIIRYLGGCDPTGENLQTSQKKEAAKQCDCTIADVE NALAKFTWAKEAHKKMAKLKAEGKPMPKSIAEVQKLMGSTPLDLARSNMAKSGQISRN ALCPCGSKKRYKRINRFKEKMDENPTPALNPQTARILMQLQMTLFHGSLDEKLVSTAE AMECHKAWDCHGSDLCQEDCKSKYNISV" mRNA complement(join(38229997..38230140,38231114..38231229, 38231773..38231934,38232133..38232281,38232447..38232755)) /locus_tag="TCM_026433" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021889001" /inference="similar to AA sequence:frave:gene16455" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g13003t00001; inference alignment:Newbler:10:TSA:cgbaP1_g01207t00002; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10948t1" mRNA complement(join(38230093..38230140,38231114..38231229, 38231773..38231934,38232133..38232281,38232414..38232712)) /locus_tag="TCM_026433" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021889001" /inference="similar to AA sequence:frave:gene16455" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g01207t00001; inference alignment:Newbler:10:TSA:cgbaP1_g01207t00002; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10948t1" CDS complement(join(38230119..38230140,38231114..38231229, 38231773..38231934,38232133..38232281,38232447..38232678)) /locus_tag="TCM_026433" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene16455" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY11177.1" /db_xref="TAIR:AT3G04950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I896" /translation="MLSSRILNNISKRMPSSSSFSLGYAYPEHHLVLPQHRSIFTTSP VHASWMDSIKGVFTGKKTSTDDPKTSAESFTLLRFADELKNARKLGTFKQYIVGRSSE ATFADAFEKQEAIIRYLGGCDPTGENLQTSQKKEAAKQCDCTIADVENALAKFTWAKE AHKKMAKLKAEGKPMPKSIAEVQKLMGSTPLDLARSNMAKSGQISRNALCPCGSKKRY KRCCGKDQ" CDS complement(join(38230119..38230140,38231114..38231229, 38231773..38231934,38232133..38232281,38232414..38232678)) /locus_tag="TCM_026433" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene16455" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY11176.1" /db_xref="TAIR:AT3G04950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I896" /translation="MLSSRILNNISKRMPSSSSFSLGYAYPEHHLVLPQHRSIFTTSP VHASWMDSIKGVFTGKKTSTDDPKTSAESFTLLRESSAHRSVTLGFADELKNARKLGT FKQYIVGRSSEATFADAFEKQEAIIRYLGGCDPTGENLQTSQKKEAAKQCDCTIADVE NALAKFTWAKEAHKKMAKLKAEGKPMPKSIAEVQKLMGSTPLDLARSNMAKSGQISRN ALCPCGSKKRYKRCCGKDQ" gene complement(38233302..38235116) /locus_tag="TCM_026434" /note="dbxref CacaoGD:Thecc1EG026434" mRNA complement(join(38233302..38234156,38234511..38235116)) /locus_tag="TCM_026434" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s04780.1" /inference="similar to AA sequence:Phytozome:POPTR_0005s04780.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08969t00001" CDS complement(join(38233502..38234156,38234511..38234866)) /locus_tag="TCM_026434" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein" /protein_id="EOY11178.1" /db_xref="Phytozome:POPTR_0005s04780.1" /db_xref="TAIR:AT3G05100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7F0M0" /translation="MASSSQKGIVITIPVLVLSVSAAAIFLFFLLSSLSSSSPCTCPP SSTITTITTNTTTADSVSGGSVQDEVGDRRVSTSREDIGWVKDQIRANGLHMQENVLR KGINPRTRAQQLEDLNNFKGISHYEGSEAKDHTALPCPGELLVEEHHSNYGEPWAGGR DVFEFLAESSHLTSNSRVLEIGCGTLRVGLHFIRYLKPEHFHCLERDELSLMAAFRYE LPSQGLLHKRPLIVRGEDMDFTKFGSDVVYDLIYASAVFLHMPDKLVWVGLERLVDRL KPYDGRIFVSHNIKFCSRLGGEECASRLASLGLEYLRKHTHDSLLFNHYEIWFEFGRT KA" gene complement(38235460..38239676) /locus_tag="TCM_026435" /note="dbxref CacaoGD:Thecc1EG026435" mRNA complement(join(38235460..38237067,38237141..38237268, 38237439..38237476,38237666..38237884,38237976..38238140, 38238241..38238425,38238519..38238625,38238719..38238880, 38238965..38239048,38239138..38239676)) /locus_tag="TCM_026435" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01021895001" /inference="similar to AA sequence:Phytozome:GSVIVT01021895001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10980t5" CDS complement(join(38236450..38237067,38237141..38237268, 38237439..38237476,38237666..38237884,38237976..38238140, 38238241..38238425,38238519..38238625,38238719..38238880, 38238965..38239048,38239138..38239360)) /locus_tag="TCM_026435" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein" /protein_id="EOY11179.1" /db_xref="Phytozome:GSVIVT01021895001" /db_xref="TAIR:AT5G27950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8W0Y9" /translation="MFISTETEQIPLPQNHVKESSTPSPMGSNPDSLNGLSPVSELPD SLPLSTVFCDVNVVPEQEKSELEQSIKNLEGEIAQLRLKQRSLDEKRRETLNKIVDIK GTIRVFCRVRPFLWTDRRRIQEPVSSELDRVVVRSSGSRKEFGFDKVFHQAANQEDIF GEVEPILRSALDGHNVCIFAYGQTGTGKTYTMDGTAVQPGIVPRALEELFHQVSLGNS SSFTFSMSMLEVYMGNLRDLLASKPASRANETVARCNLNIQTDPKGSVEIEGLTEVEI PDLAKARWWYTKGRRVRTTSWTNVNEASSRSHCLTRIIISRHGDAPEARPKVSKLWMV DLGGSERLLKTGATGQTLDEGRAINLSLSALGDVIAALRRKRGHVPYRNSKLTQILKD SLGDGSKVLMLVHISPSQEDVGETICSLSFAKRARAVESSRELPEDLKKQKEERISEL EENTREAEEECQKITCQIKKAEFLLSENKKLYSTSYEIPDENEEKSTESPKEDVKDHV IETPKITQKAMKQSTHRPLPRFMTSTVASRERQSAAEREIVKRARSLRSEARSSVQFS GSQSLSFSDPRFRAFLRHSRKNSRFKDTNAPATESPRCNGSALKTISLPRSKMVTSSD PNLRVTLSRHRRRMSDFV" mobile_element complement(38240831..38241195) /note="source:scaffold_1_CACTA_0008 14071 14410" /mobile_element_type="transposon:TIR/CACTA" mobile_element 38242979..38243040 /note="source:CACAO_on_SS_E42_scaffold_2 17531 17590" /mobile_element_type="transposon:TIR/Mutator" gene 38245692..38255944 /locus_tag="TCM_026436" /note="dbxref CacaoGD:Thecc1EG026436" mRNA join(38245692..38245958,38246618..38246728, 38247531..38247689,38248075..38248140,38248248..38248337, 38248512..38248817,38248973..38249070,38249524..38249559, 38249665..38249785,38250388..38250624,38251029..38251124, 38251225..38251290,38251439..38251477,38251572..38251706, 38251805..38252166,38252548..38252641,38253188..38253376, 38253588..38253708,38254092..38254171,38255015..38255567, 38255771..38255944) /locus_tag="TCM_026436" /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s04800.1" /inference="similar to AA sequence:Phytozome:POPTR_0005s04800.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1297t8" mRNA join(38245846..38245958,38246618..38246728, 38247531..38247689,38248075..38248140,38248248..38248337, 38248512..38248817,38248973..38249070,38249524..38249559, 38249665..38249785,38250388..38250624,38251029..38251124, 38251225..38251290,38251439..38251477,38251572..38251706, 38251805..38252166,38252548..38252641,38253188..38253376, 38253588..38253708,38254092..38255495) /locus_tag="TCM_026436" /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s04800.1" /inference="similar to AA sequence:Phytozome:POPTR_0005s04800.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1297t10; alternateUTRof:Thecc1EG026436t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1297t8" mRNA join(38245846..38245958,38246618..38246728, 38247531..38247689,38248075..38248140,38248248..38248337, 38248512..38248817,38248973..38249070,38249524..38249559, 38249665..38249785,38250388..38250624,38251029..38251124, 38251225..38251290,38251439..38251477,38251572..38251706, 38251805..38252166,38252548..38252641,38253188..38253376, 38253588..38253708,38254099..38255495) /locus_tag="TCM_026436" /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s04800.1" /inference="similar to AA sequence:Phytozome:POPTR_0005s04800.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1297t5; alternateUTRof:Thecc1EG026436t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1297t8" CDS join(38246630..38246728,38247531..38247689, 38248075..38248140,38248248..38248337,38248512..38248817, 38248973..38249070,38249524..38249559,38249665..38249785, 38250388..38250624,38251029..38251124,38251225..38251290, 38251439..38251477,38251572..38251706,38251805..38252166, 38252548..38252641,38253188..38253376,38253588..38253686) /locus_tag="TCM_026436" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /protein_id="EOY11180.1" /db_xref="Phytozome:POPTR_0005s04800.1" /db_xref="TAIR:AT3G05090.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93ZS6" /translation="MHRVGSAGNNANSNRPRKEKRLTYVLNDTDDKKHCAGINCLAVL KSSVSDGCNYLFTGSRDGTLKRWALGEDAATCSATFESHVDWVNDTVIVGDNTLVSCS SDTTLKTWNCLSDGTCTRTLRQHSDYVTCLAAAEKNTNVVASGGLGGEVFVWDIEAAV TPLSKSSDAMEDDCSNGINGSANSIPMSSLRPISSSNSITAHTAQSHGYVPISAKGHK ESVYALAMNDSGTLLVSGGTEKVVRVWDPRTGSKTMKLRGHTDNIRTLLLDSTGRYCL SGSSDSMIRLWDLGQQRCVHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLTTR ESLLLCTKEHPILQLALHDDSIWVATTDSSVHRWPAEGRNPQKIFQRGGSFLAGNLSF SRARVSLEGSTPTPVYKEPIFTITGTPAIVQHEILNNRRHVLTKDTAGSVKLWEITRG VVIEDYGQVSFDEKKEQLFEMVSIPAWFTVDTRLGSLSVHLDTPQCFSAEMYSADLNI TGKPEDDKVNLARETLKGLLAHWMTKRRQRLGSQASANGDVLTGKDITSRSLPHSRIE VDGNAENDSMVYPPFEFSIVSPPSIITEGSQGGPWRKKITELDGTEDEKDFPWWVLDC VLNNRLPPRENTKCSFYLHPCEGSNVQILTQGKLSAPRILRIHKVVNYVIEKMVLDKP IDSVNTDGTFAPGLGGQLQHSAVGDGSFRSGLKPWQKLRPSIEILCNNQVLSPDMSLA TVRAYVWKKPEDLILNYRVIQGR" CDS join(38246630..38246728,38247531..38247689, 38248075..38248140,38248248..38248337,38248512..38248817, 38248973..38249070,38249524..38249559,38249665..38249785, 38250388..38250624,38251029..38251124,38251225..38251290, 38251439..38251477,38251572..38251706,38251805..38252166, 38252548..38252641,38253188..38253376,38253588..38253686) /locus_tag="TCM_026436" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /protein_id="EOY11181.1" /db_xref="Phytozome:POPTR_0005s04800.1" /db_xref="TAIR:AT3G05090.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93ZS6" /translation="MHRVGSAGNNANSNRPRKEKRLTYVLNDTDDKKHCAGINCLAVL KSSVSDGCNYLFTGSRDGTLKRWALGEDAATCSATFESHVDWVNDTVIVGDNTLVSCS SDTTLKTWNCLSDGTCTRTLRQHSDYVTCLAAAEKNTNVVASGGLGGEVFVWDIEAAV TPLSKSSDAMEDDCSNGINGSANSIPMSSLRPISSSNSITAHTAQSHGYVPISAKGHK ESVYALAMNDSGTLLVSGGTEKVVRVWDPRTGSKTMKLRGHTDNIRTLLLDSTGRYCL SGSSDSMIRLWDLGQQRCVHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLTTR ESLLLCTKEHPILQLALHDDSIWVATTDSSVHRWPAEGRNPQKIFQRGGSFLAGNLSF SRARVSLEGSTPTPVYKEPIFTITGTPAIVQHEILNNRRHVLTKDTAGSVKLWEITRG VVIEDYGQVSFDEKKEQLFEMVSIPAWFTVDTRLGSLSVHLDTPQCFSAEMYSADLNI TGKPEDDKVNLARETLKGLLAHWMTKRRQRLGSQASANGDVLTGKDITSRSLPHSRIE VDGNAENDSMVYPPFEFSIVSPPSIITEGSQGGPWRKKITELDGTEDEKDFPWWVLDC VLNNRLPPRENTKCSFYLHPCEGSNVQILTQGKLSAPRILRIHKVVNYVIEKMVLDKP IDSVNTDGTFAPGLGGQLQHSAVGDGSFRSGLKPWQKLRPSIEILCNNQVLSPDMSLA TVRAYVWKKPEDLILNYRVIQGR" CDS join(38246630..38246728,38247531..38247689, 38248075..38248140,38248248..38248337,38248512..38248817, 38248973..38249070,38249524..38249559,38249665..38249785, 38250388..38250624,38251029..38251124,38251225..38251290, 38251439..38251477,38251572..38251706,38251805..38252166, 38252548..38252641,38253188..38253376,38253588..38253686) /locus_tag="TCM_026436" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein isoform 1" /protein_id="EOY11182.1" /db_xref="Phytozome:POPTR_0005s04800.1" /db_xref="TAIR:AT3G05090.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93ZS6" /translation="MHRVGSAGNNANSNRPRKEKRLTYVLNDTDDKKHCAGINCLAVL KSSVSDGCNYLFTGSRDGTLKRWALGEDAATCSATFESHVDWVNDTVIVGDNTLVSCS SDTTLKTWNCLSDGTCTRTLRQHSDYVTCLAAAEKNTNVVASGGLGGEVFVWDIEAAV TPLSKSSDAMEDDCSNGINGSANSIPMSSLRPISSSNSITAHTAQSHGYVPISAKGHK ESVYALAMNDSGTLLVSGGTEKVVRVWDPRTGSKTMKLRGHTDNIRTLLLDSTGRYCL SGSSDSMIRLWDLGQQRCVHSYAVHTDSVWALASTPTFSHVYSGGRDLSLYLTDLTTR ESLLLCTKEHPILQLALHDDSIWVATTDSSVHRWPAEGRNPQKIFQRGGSFLAGNLSF SRARVSLEGSTPTPVYKEPIFTITGTPAIVQHEILNNRRHVLTKDTAGSVKLWEITRG VVIEDYGQVSFDEKKEQLFEMVSIPAWFTVDTRLGSLSVHLDTPQCFSAEMYSADLNI TGKPEDDKVNLARETLKGLLAHWMTKRRQRLGSQASANGDVLTGKDITSRSLPHSRIE VDGNAENDSMVYPPFEFSIVSPPSIITEGSQGGPWRKKITELDGTEDEKDFPWWVLDC VLNNRLPPRENTKCSFYLHPCEGSNVQILTQGKLSAPRILRIHKVVNYVIEKMVLDKP IDSVNTDGTFAPGLGGQLQHSAVGDGSFRSGLKPWQKLRPSIEILCNNQVLSPDMSLA TVRAYVWKKPEDLILNYRVIQGR" mobile_element complement(38254909..38254985) /note="source:CACAO_PIF_E8_scaffold_1 289 366" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 38255622..38255771 /note="source:CACAO_PIF_E119_scaffold_3 4502 4657" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 38255992..38262466 /locus_tag="TCM_026437" /note="dbxref CacaoGD:Thecc1EG026437" mRNA join(38255992..38256556,38256961..38257871, 38258058..38258395,38258835..38258993,38259131..38259235, 38259502..38259608,38259854..38259975,38260157..38260265, 38260496..38260629,38260804..38261173,38261377..38261490, 38261697..38261782,38262016..38262466) /locus_tag="TCM_026437" /product="Esterase/lipase/thioesterase family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30128.m008656" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017293t1" /inference="similar to AA sequence:ricco:30128.m008656" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:PASA:2:TSA:puevd3b025571t1a3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10986t2" mRNA join(38255992..38256556,38256961..38257871, 38258058..38258109,38258340..38258395,38258835..38258993, 38259131..38259235,38259502..38259608,38259854..38259975, 38260157..38260265,38260496..38260629,38260804..38261173, 38261377..38261490,38261697..38261782,38262016..38262466) /locus_tag="TCM_026437" /product="Esterase/lipase/thioesterase family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30128.m008656" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017292t1" /inference="similar to AA sequence:ricco:30128.m008656" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g10986t2" CDS join(38257454..38257871,38258058..38258109, 38258340..38258395,38258835..38258993,38259131..38259235, 38259502..38259608,38259854..38259975,38260157..38260265, 38260496..38260629,38260804..38261173,38261377..38261490, 38261697..38261782,38262016..38262316) /locus_tag="TCM_026437" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30128.m008656; paralog of Thecc1EG017292t1" /codon_start=1 /product="Esterase/lipase/thioesterase family protein isoform 1" /protein_id="EOY11183.1" /db_xref="TAIR:AT1G54570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZVN2" /translation="MASAVTLRVSPCFGVNPKFKPHFRVRAERLGGGDLSVLSSDGVS VNGAGSVIGEKEKKGSLIDGGNGRLKPKVEKKLVKEMVSEELEVLWDDGYGTNTVKDY LDRAKDMIKPDGGPPRWFCPVECGRPVKGSPVLLFLPGLDGVGIGLILHHKALGKVFE VQCLHVPVCDRTPFEGLVKVVEETLRLEHASRPNSPIYLVGDSFGGCLALAVAARNPT IDLVVILVNPATSFGRSQLQPLFPILKAFPDELHVTIPYILSLVMGEPLKMATVGVEG RLPPTQKIEQLSDNLTALLPRLSCLADIIPKETLVWKLKLLKSASAYANSRLHAVKAE VLVLASDKDNMLPSREEAHRLKNLLPNCEIRFFKDNGHTLLLEDSLNLLTVIKGTSKY RRSRRHDYISDFLPPSMSEYRYAFGEVTGLLRFASCSAMFSTLEDGKIVQGLAGVPNE GPVLFVGYHMLMGLDLPCLIEAFLREKNIMVRGIAHPELFWGKFRSAGNEFAFPDWVK VMGALPVTANYLFRALSTKAHVLLYPGGQREALHYKGEQYKLFWPNQPEFVRMAARFG ATIVPFGTVGEDDIAELVLDYHDLMKIPGVSDFINKARQDAIKIRDETKGEVANQELF IPGMLPKLPGRFYYLFGKPIKLKGREDLLENREDANELYLQVKSEVEQCISYLLKKRE EDPYRSIIDRTIYRALYSPLDQVPSFEP" CDS join(38258320..38258395,38258835..38258993, 38259131..38259235,38259502..38259608,38259854..38259975, 38260157..38260265,38260496..38260629,38260804..38261173, 38261377..38261490,38261697..38261782,38262016..38262316) /locus_tag="TCM_026437" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30128.m008656; paralog of Thecc1EG017293t1" /codon_start=1 /product="Esterase/lipase/thioesterase family protein isoform 2" /protein_id="EOY11184.1" /db_xref="TAIR:AT1G54570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZVN2" /translation="MNFVECRVFEVQCLHVPVCDRTPFEGLVKVVEETLRLEHASRPN SPIYLVGDSFGGCLALAVAARNPTIDLVVILVNPATSFGRSQLQPLFPILKAFPDELH VTIPYILSLVMGEPLKMATVGVEGRLPPTQKIEQLSDNLTALLPRLSCLADIIPKETL VWKLKLLKSASAYANSRLHAVKAEVLVLASDKDNMLPSREEAHRLKNLLPNCEIRFFK DNGHTLLLEDSLNLLTVIKGTSKYRRSRRHDYISDFLPPSMSEYRYAFGEVTGLLRFA SCSAMFSTLEDGKIVQGLAGVPNEGPVLFVGYHMLMGLDLPCLIEAFLREKNIMVRGI AHPELFWGKFRSAGNEFAFPDWVKVMGALPVTANYLFRALSTKAHVLLYPGGQREALH YKGEQYKLFWPNQPEFVRMAARFGATIVPFGTVGEDDIAELVLDYHDLMKIPGVSDFI NKARQDAIKIRDETKGEVANQELFIPGMLPKLPGRFYYLFGKPIKLKGREDLLENRED ANELYLQVKSEVEQCISYLLKKREEDPYRSIIDRTIYRALYSPLDQVPSFEP" mobile_element complement(38258602..38258794) /note="source:CACAO_PIF_E115_scaffold_9 1744 1935" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 38262457..38267332 /note="source:INTACT278_F40_scaffold_5-int 1 4876" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(38267118..38267368) /note="source:INTACT123_F40_scaffold_10-int 4588 4844" /mobile_element_type="retrotransposon:LTR/Copia" gene 38269071..38270577 /locus_tag="TCM_026440" /note="dbxref CacaoGD:Thecc1EG026440" mRNA join(38269071..38269475,38269557..38270577) /locus_tag="TCM_026440" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s03320.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s03320.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc5981t1" CDS join(38269138..38269475,38269557..38270214) /locus_tag="TCM_026440" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11185.1" /db_xref="Phytozome:POPTR_0013s03320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I862" /translation="MAGYGYSYRGGYTTYSTGVPLRTDGWSKPSYTSDHACQPVIIDA EGRRKPIISYTPDGNTQCYVTKTEIVEHVPLVTGSYRQSSTPVTFEVVRDYGDGEGKW NRPSSPEKWRSPVRYHIEEKWNRPSSPVHEHESPQQVEEFITKVQTEASRPNQFGNLS ATYWRQTPNSYPVNTGYGDQSDDLSNKEWQKPSGTVIRDDRTISGPYKNNKYSPEPNG NNGGVRTKPSPEAWSTPKGARLSEPTSDINTAVACLMEAAKPSSGITAPPPSRYTIPS VSARPKRATYSETIDSREAARRYGNANLPAARPTVNYATTIDSREAARKYGGTTV" gene 38270631..38274483 /locus_tag="TCM_026441" /note="dbxref CacaoGD:Thecc1EG026441" mRNA join(38270631..38273780,38274267..38274483) /locus_tag="TCM_026441" /product="Pentatricopeptide repeat superfamily protein" /inference="alignment:exonerate-protein:2:frave:gene16440" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG007072t1" /inference="similar to AA sequence:frave:gene16440" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1220t1" CDS 38270821..38273268 /locus_tag="TCM_026441" /note="dbxref frave:gene16440; paralog of Thecc1EG007072t1" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein" /protein_id="EOY11186.1" /db_xref="TAIR:AT1G11290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B8LQA8" /translation="MPSPYLHTHHFFPKISFKFLSLHSFSTIKNANFNQTFPCFNKFL LLLQEFPNTLFCIKSIHAQIITNSESRHQFLASNLVKGYSGLGCLAIARKVFDQISQP KPILCNSMLNGYLRNQCYKETVELFEFMGFLHLEFDSYSCNYVLKACMELEDFEKGKE VVQRAVDRRVDGDRFLGSSMISFFMKFGDFDGARWVFNRMVDRDVVCWNSMISGYVKG CYYFEALGLFIEMILRGVRPSPITMVSLVQACGGLRSLELGKCVHGFVLGLGMGSDIL VLTALVDMYSKMGEIESAHLLFDSIPAKNLVSWNVMISGYVQNCLVSKSFDLFRELVI TGGDFDSGTIISLLQCCAQIADLESGKVLHGCIFRRGLDMNLILSTAIVDLYSKCGAV KEATFVFDRMKDRNVITWTAMLVGLAQNGKAEDALKLFNQMQEEGVAANSITLVGLVH SCAHLGSLKKGRSVHAQLFRHGYDFDVVNRTALIDMYAKCGKINYAERVLRDGSFFKD VILWNSMITGYGMHGQGHKALDIFCRMLEEGVKPSQTTFISLLSACSHSGLVNQGRSL FVSMESDHNIRPTEKHYACYVDLLSRAGRLQEAEALIKQMPFQSSGAVFEALLSGCRT HKNIDIGIKAADHLLSLDATNPGIYVMLSNIYAEARRWDAVDHIRGLMKKRGLKKTPG YSLIEVGKQVHTFFAGDESHPNRVEISQILENLRLELEASGYVPDTSCVLRDVDEPMK IRLLWRHSERLAIAFGLLSTPAGSLIRITKNLRVCIDCHTATKYISKVVKREIIVRDA NRFHHFVDGKCSCNDYW" mobile_element complement(38274041..38274432) /note="source:scaffold_1_CACTA_0008 14057 14444" /mobile_element_type="transposon:TIR/CACTA" mobile_element 38274317..38274454 /note="source:scaffold_2_CACTA_0281 4741 4885" /mobile_element_type="transposon:TIR/CACTA" gene 38274531..38279191 /locus_tag="TCM_026442" /note="dbxref CacaoGD:Thecc1EG026442" mRNA join(38274531..38274934,38275624..38275871, 38276810..38277029,38277455..38279191) /locus_tag="TCM_026442" /product="DsRNA-binding protein 3" /inference="alignment:exonerate- protein:2:ricco:30128.m008661.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021138t2" /inference="similar to AA sequence:ricco:30128.m008661" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04872t00001" CDS join(38275626..38275871,38276810..38277029, 38277455..38278629) /locus_tag="TCM_026442" /note="dbxref ricco:30128.m008661; paralog of Thecc1EG021138t2" /codon_start=1 /product="DsRNA-binding protein 3" /protein_id="EOY11187.1" /db_xref="TAIR:AT3G26932.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HTW4" /translation="MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGETF ESPTFCSTLRQAEHAAAEVALSTLANRGPSKALAARVLDETGVYKNLLQETAHRAGLN LPLYTTVRSGPGHVPVFSCTVELGGMSFTGEPARTKKQAQKNAAMAAWSALRKLSQHG SSSSSSPSLEFKGKEEQEQVVIARFLSSLRPSKSRHSVLNDCQHEKQRSIPVCRDLTP PTPSLFGMQGQSWPYLSFSPEMAIYQIWQQEQLLQLQNHLFTFPVSPVPPPGPQILPY VQSILHPDHCLSFRARDQEPIVTAPRLAIATSGPSLSFSNQSASQPMMGKSTVTIQEI HEEIKEEPSKYSAPLVMDPPVPGQTNVETGIKESNQEDHKKKNVELESKGENVHRKLD AGSQPVDYQLQNPHAFESSHLRPQYRPKAEYYRNSRPPSSATAPMMIRTVNPVSSVRP NTQRPATQVPVPPRMRTGAPPFSTRPRFERMNLGDMHPSSMAPPVRIRSVVPVCSAPP PREKPSFDQEGMLPNKEKKDTVSEDVSTATSELSKLNM" mobile_element complement(38277464..38277525) /note="source:CACAO_M_E9395_F12_scaffold_2 22065 22120" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 38278953..38279021 /note="source:scaffold_3_CACTA_0377 5017 5087" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(38279029..38279115) /note="source:scaffold_1_CACTA_0032 2353 2436" /mobile_element_type="transposon:TIR/CACTA" gene 38279241..38283772 /locus_tag="TCM_026443" /note="dbxref CacaoGD:Thecc1EG026443" mRNA join(38279241..38279459,38279804..38279910, 38280080..38280121,38280232..38280411,38280508..38280672, 38281301..38281501,38281695..38282192,38282274..38283356) /locus_tag="TCM_026443" /product="NOP56-like pre RNA processing ribonucleoprotein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s04710.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014605t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400040374" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:PASA:2:TSA:puevd3b025576t1a2; inference alignment:Newbler:10:TSA:cgbaL_g01895t00002" mRNA join(38279386..38279459,38279779..38279910, 38280080..38280121,38280232..38280411,38280508..38280672, 38281301..38281501,38281695..38282192,38282274..38282405, 38282488..38283772) /locus_tag="TCM_026443" /product="NOP56-like pre RNA processing ribonucleoprotein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s04710.1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400010835" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05136t00001" CDS join(38279833..38279910,38280080..38280121, 38280232..38280411,38280508..38280672,38281301..38281501, 38281695..38282192,38282274..38282405,38282488..38282889) /locus_tag="TCM_026443" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="NOP56-like pre RNA processing ribonucleoprotein isoform 1" /protein_id="EOY11188.1" /db_xref="Phytozome:PGSC0003DMP400010835" /db_xref="TAIR:AT5G27120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O65334" /translation="MLVLFETPAGFALFKVLDEGKLNKVEDLSKEFLAADSARKVVSL KAFSKFENTAEALEAATKLLESTPSKGLRKFLRAHCDGETVAVADSKLGNAIKEKLKI ECVHNNAVMELMRGVRSQLTELISGLAAQDLAPMSLGLSHSLSRFKLKFSADKVDTMI VQAIGLLDDLDKELNTYAMRIREWYGWHFPELTKIVQDNILYAKTVKLMGDRANAAKL DFSEILLEEVETELKEAAVISMGTEVNDLDLTSLKELCDQVLSLAEYRAQLYDYLKSR MNTIAPNLTALVGELVGARLIAHGGSLMNLAKQPGSTVQILGAEKALFRALKTKHSTP KYGLIYHASLVGQAAPKHKGKISRSLAAKAALAIRCDALGDDQDNSMGLENRAKLEAR LRTLEGKELGRSAGSAKGKPKIEVYDKDRRKGAGLITPVKTYNPAADSLLGQTTPDEQ DTVPKKKKNVEAEPSQAEEAEEAPATEEKKEKKKKKKKADQEADLPANGNHPEGEEPA PKEKEKKKKKKHQAEVDGENVEVGEKKKKKRKHAEQGEEESEVQIKKEKKKKKKSED" CDS join(38279833..38279910,38280080..38280121, 38280232..38280411,38280508..38280672,38281301..38281501, 38281695..38282192,38282274..38282441) /locus_tag="TCM_026443" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG014605t1" /codon_start=1 /product="NOP56-like pre RNA processing ribonucleoprotein isoform 3" /protein_id="EOY11190.1" /db_xref="Phytozome:PGSC0003DMP400040374" /db_xref="TAIR:AT5G27120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O65334" /translation="MLVLFETPAGFALFKVLDEGKLNKVEDLSKEFLAADSARKVVSL KAFSKFENTAEALEAATKLLESTPSKGLRKFLRAHCDGETVAVADSKLGNAIKEKLKI ECVHNNAVMELMRGVRSQLTELISGLAAQDLAPMSLGLSHSLSRFKLKFSADKVDTMI VQAIGLLDDLDKELNTYAMRIREWYGWHFPELTKIVQDNILYAKTVKLMGDRANAAKL DFSEILLEEVETELKEAAVISMGTEVNDLDLTSLKELCDQVLSLAEYRAQLYDYLKSR MNTIAPNLTALVGELVGARLIAHGGSLMNLAKQPGSTVQILGAEKALFRALKTKHSTP KYGLIYHASLVGQAAPKHKGKISRSLAAKAALAIRCDALGDDQDNSMGLENRAKLEAR LRTLEGKELGRSAGSAKGKPKIEVYDKDRRKGAGLITPVKVSVSESIICSI" mRNA join(<38279842..38279910,38280080..38280121, 38280232..38280411,38280508..38280672,38281301..38281501, 38281695..38283111) /locus_tag="TCM_026443" /product="NOP56-like pre RNA processing ribonucleoprotein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s04710.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014605t1" /inference="similar to AA sequence:Phytozome:GSVIVT01021905001" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.57 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01895t00001; inference alignment:Newbler:10:TSA:cgbaL_g01895t00002; inference alignment:Newbler:10:TSA:cgbaB_g05136t00001" mRNA join(<38279842..38279910,38280080..38280121, 38280232..38280411,38280508..38280672,38281301..38281501, 38281695..38282192,38282274..38282405,38282488..38282655, 38282737..38282823,38282970..38283111) /locus_tag="TCM_026443" /product="NOP56-like pre RNA processing ribonucleoprotein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s04710.1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400010835" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01895t00002; inference alignment:Newbler:10:TSA:cgbaL_g01895t00002; inference alignment:Newbler:10:TSA:cgbaB_g05136t00001" CDS join(<38279842..38279910,38280080..38280121, 38280232..38280411,38280508..38280672,38281301..38281501, 38281695..38282192,38282274..38282405,38282488..38282655, 38282737..38282823,38282970..38283038) /locus_tag="TCM_026443" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="NOP56-like pre RNA processing ribonucleoprotein isoform 2" /protein_id="EOY11189.1" /db_xref="Phytozome:PGSC0003DMP400010835" /db_xref="TAIR:AT5G27120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O65334" /translation="LFETPAGFALFKVLDEGKLNKVEDLSKEFLAADSARKVVSLKAF SKFENTAEALEAATKLLESTPSKGLRKFLRAHCDGETVAVADSKLGNAIKEKLKIECV HNNAVMELMRGVRSQLTELISGLAAQDLAPMSLGLSHSLSRFKLKFSADKVDTMIVQA IGLLDDLDKELNTYAMRIREWYGWHFPELTKIVQDNILYAKTVKLMGDRANAAKLDFS EILLEEVETELKEAAVISMGTEVNDLDLTSLKELCDQVLSLAEYRAQLYDYLKSRMNT IAPNLTALVGELVGARLIAHGGSLMNLAKQPGSTVQILGAEKALFRALKTKHSTPKYG LIYHASLVGQAAPKHKGKISRSLAAKAALAIRCDALGDDQDNSMGLENRAKLEARLRT LEGKELGRSAGSAKGKPKIEVYDKDRRKGAGLITPVKTYNPAADSLLGQTTPDEQDTV PKKKKNVEAEPSQAEEAEEAPATEEKKEKKKKKKKKKKKHQAEVDGENVEVGEKKKKK RKHAEQMWYFAELLIIWKCSSNLILTYF" CDS join(<38279842..38279910,38280080..38280121, 38280232..38280411,38280508..38280672,38281301..38281501, 38281695..38282204) /locus_tag="TCM_026443" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG014605t1" /codon_start=1 /product="NOP56-like pre RNA processing ribonucleoprotein isoform 4" /protein_id="EOY11191.1" /db_xref="Phytozome:GSVIVT01021905001" /db_xref="TAIR:AT5G27120.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O65334" /translation="LFETPAGFALFKVLDEGKLNKVEDLSKEFLAADSARKVVSLKAF SKFENTAEALEAATKLLESTPSKGLRKFLRAHCDGETVAVADSKLGNAIKEKLKIECV HNNAVMELMRGVRSQLTELISGLAAQDLAPMSLGLSHSLSRFKLKFSADKVDTMIVQA IGLLDDLDKELNTYAMRIREWYGWHFPELTKIVQDNILYAKTVKLMGDRANAAKLDFS EILLEEVETELKEAAVISMGTEVNDLDLTSLKELCDQVLSLAEYRAQLYDYLKSRMNT IAPNLTALVGELVGARLIAHGGSLMNLAKQPGSTVQILGAEKALFRALKTKHSTPKYG LIYHASLVGQAAPKHKGKISRSLAAKAALAIRCDALGDDQDNSMGLENRAKVKS" gene 38283336..38292580 /locus_tag="TCM_026444" /note="dbxref CacaoGD:Thecc1EG026444" mRNA join(38283336..38283363,38286296..38286781, 38286896..38287401,38287705..38287989,38288098..38288415, 38288783..38289010,38289151..38289251,38290912..38291026, 38291545..38292274) /locus_tag="TCM_026444" /product="Serine/threonine-protein kinase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s03250.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021134t2" /inference="similar to AA sequence:Phytozome:POPTR_0005s04700.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc229t1" mobile_element 38285114..38285303 /note="source:scaffold_5_CACTA_0580 4538 4752" /mobile_element_type="transposon:TIR/CACTA" mRNA join(38286113..38287401,38287705..38287989, 38288098..38288415,38288783..38289010,38289151..38289251, 38290912..38291026,38291548..38292580) /locus_tag="TCM_026444" /product="Serine/threonine-protein kinase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s03250.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021134t2" /inference="similar to AA sequence:Phytozome:POPTR_0005s04700.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:PASA:2:TSA:puevd3b025577t1a2; alternateUTRof:Thecc1EG026444t2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc229t1" mRNA join(38286418..38286481,38286642..38286781, 38286896..38287401,38287705..38287989,38288098..38288415, 38288783..38289010,38289151..38289251,38290912..38291026, 38291548..38292412) /locus_tag="TCM_026444" /product="Serine/threonine-protein kinase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s03250.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021134t2" /inference="similar to AA sequence:Phytozome:POPTR_0005s04700.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc231t3; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc229t1" CDS join(38287042..38287401,38287705..38287989, 38288098..38288415,38288783..38289010,38289151..38289251, 38290912..38291026,38291545..38291886) /locus_tag="TCM_026444" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG021134t2" /codon_start=1 /product="Serine/threonine-protein kinase isoform 1" /protein_id="EOY11192.1" /db_xref="Phytozome:POPTR_0005s04700.1" /db_xref="TAIR:AT1G54610.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZVM9" /translation="MGCVLGREVSSGIVSESRESKNANFESNKKAENVTVSKTDASVV EVENEGTRKEEKADGERKQRGERRKSKPNPRLSNLPKHLCGEQVAAGWPSWLSDACGE ALNGWIPRRADTFEKIDKIGSGTYSNVYKAKDMVTGKIVALKKVRFDNLEPESVKFMA REILILRRLDHPNVVKLEGLVTSRMSCSLYLVFQYMEHDLAGLAASPIVKFTEPQVKC YMYQLLSGLEHCHNRGVLHRDIKGSNLLIDDGGVLKIADFGLATFFDPNRKHPMTSRV VTLWYRAPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGS PSDEYWKKSKLPNATLFKPREPYKRCIKETFKDFPPSSLPLIDTLLAIDPAERLTATA ALRSEFFTTEPCACEPSSLPKYPPSKEMDAKRRDDEARRLRAASKTQGDGARKTRTRD RARAIPAPEANAELQSNLDQRRRLITHANAKSKSEKFPPPHQDGALGFPLGASHHIDP AFVPPDVPFSTTSFTYSKEPIHTWSGPLVDSASMGAPRRKKNVAGDLHEPSKPPTGSQ KDKSGDTRVKGKRSIL" CDS join(38287042..38287401,38287705..38287989, 38288098..38288415,38288783..38289010,38289151..38289251, 38290912..38291026,38291548..38291886) /locus_tag="TCM_026444" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG021134t2" /codon_start=1 /product="Serine/threonine-protein kinase isoform 2" /protein_id="EOY11193.1" /db_xref="Phytozome:POPTR_0005s04700.1" /db_xref="TAIR:AT1G54610.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZVM9" /translation="MGCVLGREVSSGIVSESRESKNANFESNKKAENVTVSKTDASVV EVENEGTRKEEKADGERKQRGERRKSKPNPRLSNLPKHLCGEQVAAGWPSWLSDACGE ALNGWIPRRADTFEKIDKIGSGTYSNVYKAKDMVTGKIVALKKVRFDNLEPESVKFMA REILILRRLDHPNVVKLEGLVTSRMSCSLYLVFQYMEHDLAGLAASPIVKFTEPQVKC YMYQLLSGLEHCHNRGVLHRDIKGSNLLIDDGGVLKIADFGLATFFDPNRKHPMTSRV VTLWYRAPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGS PSDEYWKKSKLPNATLFKPREPYKRCIKETFKDFPPSSLPLIDTLLAIDPAERLTATA ALRSEFFTTEPCACEPSSLPKYPPSKEMDAKRRDDEARRLRAASKTQGDGARKTRTRD RARAIPAPEANAELQSNLDRRRLITHANAKSKSEKFPPPHQDGALGFPLGASHHIDPA FVPPDVPFSTTSFTYSKEPIHTWSGPLVDSASMGAPRRKKNVAGDLHEPSKPPTGSQK DKSGDTRVKGKRSIL" CDS join(38287042..38287401,38287705..38287989, 38288098..38288415,38288783..38289010,38289151..38289251, 38290912..38291026,38291548..38291886) /locus_tag="TCM_026444" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG021134t2" /codon_start=1 /product="Serine/threonine-protein kinase isoform 2" /protein_id="EOY11194.1" /db_xref="Phytozome:POPTR_0005s04700.1" /db_xref="TAIR:AT1G54610.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZVM9" /translation="MGCVLGREVSSGIVSESRESKNANFESNKKAENVTVSKTDASVV EVENEGTRKEEKADGERKQRGERRKSKPNPRLSNLPKHLCGEQVAAGWPSWLSDACGE ALNGWIPRRADTFEKIDKIGSGTYSNVYKAKDMVTGKIVALKKVRFDNLEPESVKFMA REILILRRLDHPNVVKLEGLVTSRMSCSLYLVFQYMEHDLAGLAASPIVKFTEPQVKC YMYQLLSGLEHCHNRGVLHRDIKGSNLLIDDGGVLKIADFGLATFFDPNRKHPMTSRV VTLWYRAPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIYKLCGS PSDEYWKKSKLPNATLFKPREPYKRCIKETFKDFPPSSLPLIDTLLAIDPAERLTATA ALRSEFFTTEPCACEPSSLPKYPPSKEMDAKRRDDEARRLRAASKTQGDGARKTRTRD RARAIPAPEANAELQSNLDRRRLITHANAKSKSEKFPPPHQDGALGFPLGASHHIDPA FVPPDVPFSTTSFTYSKEPIHTWSGPLVDSASMGAPRRKKNVAGDLHEPSKPPTGSQK DKSGDTRVKGKRSIL" mobile_element 38290133..38290214 /note="source:scaffold_2_CACTA_0239 8858 8934" /mobile_element_type="transposon:TIR/CACTA" gene 38292991..38303526 /locus_tag="TCM_026445" /note="dbxref CacaoGD:Thecc1EG026445" mRNA join(38292991..38293346,38294462..38294563, 38294758..38294901,38295006..38295086,38295177..38295246, 38295495..38295565,38295641..38295804,38295898..38295969, 38296061..38296298,38296531..38296593,38296683..38296967, 38297070..38297183,38297286..38297412,38297502..38297671, 38297763..38297864,38298804..38298907,38298993..38299284, 38299436..38299680,38300253..38300756,38300872..38301166, 38301270..38301453,38301663..38301853,38303144..38303526) /locus_tag="TCM_026445" /product="ARM repeat superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30128.m008664" /inference="similar to AA sequence:Phytozome:GSVIVT01021908001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1366t4" mRNA join(38293003..38293346,38294462..38294563, 38294758..38294901,38295006..38295086,38295177..38295246, 38295495..38295565,38295641..38295804,38295898..38295969, 38296061..38296298,38296531..38296593,38296683..38296967, 38297070..38297183,38297286..38297412,38297502..38297671, 38297763..38297864,38298804..38298907,38298993..38299284, 38299436..38299680,38300253..38300756,38300872..38301227) /locus_tag="TCM_026445" /product="ARM repeat superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400038992" /inference="alignment:exonerate- protein:2:ricco:30128.m008664" /inference="similar to AA sequence:ricco:30128.m008664" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1257t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1366t4" CDS join(38293227..38293346,38294462..38294563, 38294758..38294901,38295006..38295086,38295177..38295246, 38295495..38295565,38295641..38295804,38295898..38295969, 38296061..38296298,38296531..38296593,38296683..38296967, 38297070..38297183,38297286..38297412,38297502..38297671, 38297763..38297864,38298804..38298907,38298993..38299284, 38299436..38299680,38300253..38300756,38300872..38301166, 38301270..38301453,38301663..38301751) /locus_tag="TCM_026445" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="ARM repeat superfamily protein isoform 1" /protein_id="EOY11195.1" /db_xref="Phytozome:GSVIVT01021908001" /db_xref="TAIR:AT3G05040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WP44" /translation="MEEGNSNDSKVNNVARAIVAALDWNSTPDARKAAVSYLESIKAG DIRILANTSFLLVKKNWSSEIRLHAFKMLQHLVRLRWEEFGPLERKNFANVAVELMSE IADPCEEWALKSQTAALVAEMVRREGLNLWQELLPSLVSLSSQGPVQAELVSMMLRWL PEDITVHNEDLEGDRRRLLLRGLTQSLPEILPLLYTLLERHFGAVLSEVSRQQLEIAK QHAAAVTATLNAVNAYAEWAPLPDLAKYGIIHGCGFLLSSPDFRLHACEFFKLVSPRK RPADDAASEFDSAMNSIFQILMNVSREFLVRSSSTGGAIDESDCEFAEYVCESMVSLG SSNLQCIVGDSTTLSLYLLQMLGFFQHFKLALHYQSLQFWLALMRDLMSKPKLHSAGD GSAVTNVDSTSAQVDSEKRKILSFLNDDICSAILDISFQRMLKKEKLMTGTALSLGVL ELWSDDFEGKGDFGQYRSRLLDLIKFIASNKALVAGAKISERIIMIIKNLLNSPMPAQ DLVVMESMQVALENVVSSIFDGSNEFAGGSSEVHLALCRIFEGLLRELLSLNWTEPAL VEVLGRYLDAMGPFLKYFPDAVGSVINKLFELLNSLPFVVKDPSTSSARHARLQICTS FIRMAKAADKSILPHMKGIADTMAYLRREGCLLRGEHNLLGEAFLVMASAAGIQQQQE VLAWLLEPLSQQWIPIEWQNNYLSEPLGLVRLCSDTAFMWSLFHTVTFFEKALKRSGM RKGNLNLQNSSTASSTPHPIAAHLSWMLPPLLTLLRAIHSLWSPSIFQTLPGEIKAAM SMSDVERSSLLGGGNPKLSKGALTFIDGSQFDVNKEGYTEPNEADIRNWLKGIRDSGY NVLGLSTTIGDPFFQFMDIDSVALALIENIQSMEFRHTRQLVHSILIPLVKSCPPDMW EVWLEKLLHPLFVHCQRALSCSWSSLLHEGRAKVPDNHGILTGSDLKVEVMEEKLLRD LTREICLLLSTMASPGLNAALPNLEHSGHFGRVDMSSLKDLDAFASSSMVGFLLKHKS LAIPVLQISLEAFTWTDSEAVTKVCSFSAAVVLLAIFTNNVELQEFVSRDLFSAVIRG LALESNAVISADLVNLCREIFIYLCDRDTAPRQILLSLPSVSPNDLHAFEEALAKTAS PKEQKQHMRSLLLLASGNNLKALAAQKSVNIITNVTTRPRGSVNVPENRIDEGDTNHT IGLAAIL" CDS join(38293227..38293346,38294462..38294563, 38294758..38294901,38295006..38295086,38295177..38295246, 38295495..38295565,38295641..38295804,38295898..38295969, 38296061..38296298,38296531..38296593,38296683..38296967, 38297070..38297183,38297286..38297412,38297502..38297671, 38297763..38297864,38298804..38298907,38298993..38299284, 38299436..38299680,38300253..38300756,38300872..38301199) /locus_tag="TCM_026445" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30128.m008664" /codon_start=1 /product="ARM repeat superfamily protein isoform 2" /protein_id="EOY11196.1" /db_xref="TAIR:AT3G05040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WP44" /translation="MEEGNSNDSKVNNVARAIVAALDWNSTPDARKAAVSYLESIKAG DIRILANTSFLLVKKNWSSEIRLHAFKMLQHLVRLRWEEFGPLERKNFANVAVELMSE IADPCEEWALKSQTAALVAEMVRREGLNLWQELLPSLVSLSSQGPVQAELVSMMLRWL PEDITVHNEDLEGDRRRLLLRGLTQSLPEILPLLYTLLERHFGAVLSEVSRQQLEIAK QHAAAVTATLNAVNAYAEWAPLPDLAKYGIIHGCGFLLSSPDFRLHACEFFKLVSPRK RPADDAASEFDSAMNSIFQILMNVSREFLVRSSSTGGAIDESDCEFAEYVCESMVSLG SSNLQCIVGDSTTLSLYLLQMLGFFQHFKLALHYQSLQFWLALMRDLMSKPKLHSAGD GSAVTNVDSTSAQVDSEKRKILSFLNDDICSAILDISFQRMLKKEKLMTGTALSLGVL ELWSDDFEGKGDFGQYRSRLLDLIKFIASNKALVAGAKISERIIMIIKNLLNSPMPAQ DLVVMESMQVALENVVSSIFDGSNEFAGGSSEVHLALCRIFEGLLRELLSLNWTEPAL VEVLGRYLDAMGPFLKYFPDAVGSVINKLFELLNSLPFVVKDPSTSSARHARLQICTS FIRMAKAADKSILPHMKGIADTMAYLRREGCLLRGEHNLLGEAFLVMASAAGIQQQQE VLAWLLEPLSQQWIPIEWQNNYLSEPLGLVRLCSDTAFMWSLFHTVTFFEKALKRSGM RKGNLNLQNSSTASSTPHPIAAHLSWMLPPLLTLLRAIHSLWSPSIFQTLPGEIKAAM SMSDVERSSLLGGGNPKLSKGALTFIDGSQFDVNKEGYTEPNEADIRNWLKGIRDSGY NVLGLSTTIGDPFFQFMDIDSVALALIENIQSMEFRHTRQLVHSILIPLVKSCPPDMW EVWLEKLLHPLFVHCQRALSCSWSSLLHEGRAKVPDNHGILTGSDLKVEVMEEKLLRD LTREICLLLSTMASPGLNAALPNLEHSGHFGRVDMSSLKDLDAFASSSMVGFLLKHKS LAIPVLQISLEAFTWTDSEAVTKVCSFSAAVVLLAIFTNNVELQEFVSRDLFSAVIRG LALESNAVISADLVNLCREIFIYLCDRDTAPRQVSFGSNLHKF" gene complement(38303792..38304157) /locus_tag="TCM_026447" /note="dbxref CacaoGD:Thecc1EG026447" mRNA complement(join(38303792..38303843,38303937..38304157)) /locus_tag="TCM_026447" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11013t1" CDS complement(join(38303804..38303843,38303937..38304088)) /locus_tag="TCM_026447" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11197.1" /translation="MKGTNIMLYFIFTNSLAHFLQDSSCPFHAYIPGHFHLLASQVVN LIILGPGLKRCAPKGFNPM" mobile_element 38306340..38306462 /note="source:scaffold_5_CACTA_0593 3317 3437" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(38306352..38306437) /note="source:scaffold_8_CACTA_0863 655 739" /mobile_element_type="transposon:TIR/CACTA" gene 38307440..38311313 /locus_tag="TCM_026448" /note="dbxref CacaoGD:Thecc1EG026448" mRNA join(38307440..38307823,38307954..38308013, 38308748..38308980,38309073..38309149,38309524..38309581, 38309675..38309759,38309843..38309912,38310033..38311313) /locus_tag="TCM_026448" /product="Homeodomain-like superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29950.m001149" /inference="similar to AA sequence:ricco:29950.m001149" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc2456t2" CDS join(38307711..38307823,38307954..38308013, 38308748..38308980,38309073..38309149,38309524..38309581, 38309675..38309759,38309843..38309912,38310033..38310773) /locus_tag="TCM_026448" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29950.m001149" /codon_start=1 /product="Homeodomain-like superfamily protein isoform 1" /protein_id="EOY11198.1" /db_xref="TAIR:AT3G04030.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SQQ9" /translation="MYSLFHSLPSNNLQGRASFTPPFYFSFFLYVSNSKASSFTVNID NPKKRLQQQGEEQSSFWRQKMYHHHHQHQGKNIHPSSRMPIPPERHLFLQGGNGPGDS GLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHL QKYRLSKNLHGQANNGSNKIGAVAMAGDRMSEANGTHVNNLSIGPQANNGLQIGEALQ MQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGSVGLEAAKVQL SELVSKVSNQCLNSAFSDLKDLQGLCPQQTQATPPTDCSMDSCLTSCEGSQKEQEIHN NGMCLRPYNTSGALLEQREIAEDPLLPQTELKSFEDIKENKMFLSSLGKDAERRMFFA DRSSSDLSMSVGLQGEKGNGGNSSSFSEAKFKGRNEDDSFLDRGNKRADEVNRLPYFA TKLDLNVHEENDAASSCKQFDLNGLSWN" mRNA join(38308501..38308670,38308748..38308980, 38309073..38309149,38309524..38309581,38309675..38309759, 38309843..38309912,38310033..38311169) /locus_tag="TCM_026448" /product="Homeodomain-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29950.m001149" /inference="similar to AA sequence:ricco:29950.m001149" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc4500t1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc2456t2" mRNA join(38308501..38308670,38308764..38308980, 38309073..38309149,38309524..38309581,38309675..38309759, 38309843..38309912,38310033..38311169) /locus_tag="TCM_026448" /product="Homeodomain-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29950.m001149" /inference="similar to AA sequence:ricco:29950.m001149" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc4500t2; alternateUTRof:Thecc1EG026448t2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc2456t2" CDS join(38308767..38308980,38309073..38309149, 38309524..38309581,38309675..38309759,38309843..38309912, 38310033..38310773) /locus_tag="TCM_026448" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29950.m001149" /codon_start=1 /product="Homeodomain-like superfamily protein isoform 2" /protein_id="EOY11199.1" /db_xref="TAIR:AT3G04030.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SQQ9" /translation="MYHHHHQHQGKNIHPSSRMPIPPERHLFLQGGNGPGDSGLVLST DAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLS KNLHGQANNGSNKIGAVAMAGDRMSEANGTHVNNLSIGPQANNGLQIGEALQMQIEVQ RRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGSVGLEAAKVQLSELVSK VSNQCLNSAFSDLKDLQGLCPQQTQATPPTDCSMDSCLTSCEGSQKEQEIHNNGMCLR PYNTSGALLEQREIAEDPLLPQTELKSFEDIKENKMFLSSLGKDAERRMFFADRSSSD LSMSVGLQGEKGNGGNSSSFSEAKFKGRNEDDSFLDRGNKRADEVNRLPYFATKLDLN VHEENDAASSCKQFDLNGLSWN" CDS join(38308767..38308980,38309073..38309149, 38309524..38309581,38309675..38309759,38309843..38309912, 38310033..38310773) /locus_tag="TCM_026448" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29950.m001149" /codon_start=1 /product="Homeodomain-like superfamily protein isoform 2" /protein_id="EOY11200.1" /db_xref="TAIR:AT3G04030.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SQQ9" /translation="MYHHHHQHQGKNIHPSSRMPIPPERHLFLQGGNGPGDSGLVLST DAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLS KNLHGQANNGSNKIGAVAMAGDRMSEANGTHVNNLSIGPQANNGLQIGEALQMQIEVQ RRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGSVGLEAAKVQLSELVSK VSNQCLNSAFSDLKDLQGLCPQQTQATPPTDCSMDSCLTSCEGSQKEQEIHNNGMCLR PYNTSGALLEQREIAEDPLLPQTELKSFEDIKENKMFLSSLGKDAERRMFFADRSSSD LSMSVGLQGEKGNGGNSSSFSEAKFKGRNEDDSFLDRGNKRADEVNRLPYFATKLDLN VHEENDAASSCKQFDLNGLSWN" gene 38311682..38320043 /locus_tag="TCM_026449" /note="dbxref CacaoGD:Thecc1EG026449" mRNA join(38311682..38311771,38312211..38312712, 38313065..38313196,38313424..38313561,38313959..38314009, 38314227..38314316,38314410..38314556,38314753..38314857, 38315137..38315193,38315365..38316075,38316158..38316328, 38316543..38316708,38317223..38317365,38317734..38318009, 38318122..38318262,38318345..38318526,38318630..38318690, 38319484..38320043) /locus_tag="TCM_026449" /product="Transcription regulator NOT2/NOT3/NOT5 family protein" /inference="alignment:exonerate-protein:2:frave:gene09284" /inference="similar to AA sequence:ricco:29950.m001150" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc114t14" CDS join(38312620..38312712,38313065..38313196, 38313424..38313561,38313959..38314009,38314227..38314316, 38314410..38314556,38314753..38314857,38315137..38315193, 38315365..38316075,38316158..38316328,38316543..38316708, 38317223..38317365,38317734..38318009,38318122..38318262, 38318345..38318526,38318630..38318690,38319484..38319534) /locus_tag="TCM_026449" /note="dbxref ricco:29950.m001150" /codon_start=1 /product="Transcription regulator NOT2/NOT3/NOT5 family protein" /protein_id="EOY11201.1" /db_xref="TAIR:AT5G18230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JWJ7" /translation="MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKF EADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKQIEREMERFKICE KETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNVVGELESQIDNFEAELEGLTVKK GKTRPPRLIHLESSITRHKAHIMKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQE DFDNFSEVDDLYHSLPLDKVESLEDLVTIGPLSKGAPILNLKTSLATSASQVPGSSSQ EHVEDTASQDSNSDVARTPPSKSSATNSSAAATPTGSHATPAPVNLPPHSMSGASTAS VVLPGSSSARGVLESAGTTNPSSPVNLPNATKEEDITSFPGRRPSPSLADTGVRGIGR GGLSSQPSSSIPLVSGSATSTNGALGVVPSVSDVAKRNILGADERLGNSSMGQSLVSP LSNRMILPQATKANDGSAPVDSSNPSESAGLPGRAFSPSMVSGMQWRAGSSFQNQNEL GQFRGRTEIAPDIREKFLQRLQQVQQQGHSNLLSIPSLAGGNHKQFSAQQQNPLMQQF NSQSSALSIQPGMGLGGQAPSLNSVTSASLQQSPNSIHQQSSQQALATSVPKDADVGH AKVEEQQPQNLPDDSSSEAVPTSGLAKNLMNEDEMKAPYAIDSPAAVSGSLTEPAQVI RDTDLSPGQPLQTSQSCSSLGVIGRRSVSDLGAIGDNLSGSTNSGGMHDQIYNLQMLE AAYFKIPQPKDSERPRSYTPKHPAATPASYPQVQAPIVNNPAFWERLSIDGYGTGTDT LFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKIATDEFEQGTYVYFD FHIANDDHQHGWCQRIKTEFTFEYNYLEDELMAGSCIGASLIEACSSD" gene 38325876..38329574 /locus_tag="TCM_026450" /note="dbxref CacaoGD:Thecc1EG026450" mRNA join(38325876..38326521,38328136..38329574) /locus_tag="TCM_026450" /product="O-Glycosyl hydrolases family 17 protein" /inference="alignment:exonerate- protein:2:ricco:29950.m001151" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001274t1" /inference="similar to AA sequence:frave:gene21072" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaL_g07766t00001" CDS join(38326181..38326521,38328136..38329234) /locus_tag="TCM_026450" /note="dbxref frave:gene21072; paralog of Thecc1EG001274t1" /codon_start=1 /product="O-Glycosyl hydrolases family 17 protein" /protein_id="EOY11202.1" /db_xref="TAIR:AT1G64760.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NKW9" /translation="MGNSWFLGILLPIFLCLYLFGGFVNGLGVNWGTMATHKLPPKTV VQMIKDNGIKKVKLFDADSNTMSALAGSDLEVMVAIPNDQLLAMNSYDRAKEWVRRNV TRYNFNGGVNIKYVAVGNEPFLTTYNGSFVNITFPALQNIQNALNDAGVGDSIKATVP LNADVYNSPDSNPVPSAGRFRSDISGIMTQIVDFLSKNSAPFTVNIYPFLSLYGNDDF PFNYAFFDGGTPITDNGIQYTNVFDANFDTLVSALKAVGHGDMTIIVGEVGWPTDGDK NANVANAQRFYNGLMPRLAANTGTPLRPGYIEVYLFGLIDEDAKSIAPGNFERHWGIY RYDGQPKFPLDLSGQNQNRFLIGAQNVEYLPQKWCTFNPNAKDLSKLADNINYACTFS DCTALGYGSSCNNLDANGNASFAFNMYYQVQNQNDMACNFQGLGTVTTQNLSQGTCNF IIQIASSSSSVGPSLVGIAFLTALTSLLL" mobile_element 38331335..38331395 /note="source:CACAO_M_E58230_F143_scaffold_9 1668 1729" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(38333453..38334821) /locus_tag="TCM_026451" /note="dbxref CacaoGD:Thecc1EG026451" mRNA complement(join(38333453..38334226,38334439..38334821)) /locus_tag="TCM_026451" /product="GATA transcription factor 9, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s04860.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033385001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g10115t00001" CDS complement(join(38333453..38334226,38334439..38334573)) /locus_tag="TCM_026451" /codon_start=1 /product="GATA transcription factor 9, putative" /protein_id="EOY11203.1" /db_xref="Phytozome:GSVIVT01033385001" /db_xref="TAIR:AT4G32890.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5Z2" /translation="MDFCQNVSVSGEYHQEQVLSSPCSKLGATLATTGTLDDLFPAQN TEVDKSLEWLSIFVEDCLSSTGNCIPVAATTNVQNKSTTTATKPAQSLQQKPQQIIPP SLQKFVVPGKARSKRKRVAATTLSKTKMNPFTSWSYQLNSHNQNLHLASSDPPLLQQA YWLADSELIVPKKEDDSNNSSSNMRGNSETEESKKEEMEGEKTVVVCKESLGSLEGNS GQQQQQQPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFV SYLHSNSHKKVMEMRMALLSSIPSEQ" mobile_element complement(38334880..38334924) /note="source:CACAO_M_S_E64832_F14_scaffold_5 3108 3151" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(38337840..38342147) /locus_tag="TCM_026452" /note="dbxref CacaoGD:Thecc1EG026452" mRNA complement(join(38337840..38338258,38338573..38338656, 38339391..38339472,38340102..38340193,38340383..38340457, 38340877..38340931,38341516..38342147)) /locus_tag="TCM_026452" /product="HNH endonuclease" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033386001" /inference="similar to AA sequence:ricco:29950.m001153" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00511t00003" CDS complement(join(38338136..38338258,38338573..38338656, 38339391..38339472,38340102..38340193,38340383..38340457, 38340877..38340931,38341516..38341850)) /locus_tag="TCM_026452" /note="dbxref ricco:29950.m001153" /codon_start=1 /product="HNH endonuclease" /protein_id="EOY11204.1" /db_xref="TAIR:AT2G23840.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I5Z1" /translation="MAQFTPQGRLKLLFHGDGVEPKDPFHYKLVSNVFGGSGGLKSLQ AQRRLRFLGSTATRQYFSSSLKKGSKFNAKVRPNVSDEGFYDEEDYDSDFETGNLACF RGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTVNSPSGSFYIPAVLRVPHLL QVVKRRRIRTNLSRKNVLFRDNFTCQYCSAHENLTIDHVLPVARGGEWKWENLVAACA KCNSKKGQKTLEEANMKLIKVPKVPKDYDILAIPLTSAAIRMLRKRNGTPEEWRQYLS PSTEP" gene complement(38342241..38347714) /locus_tag="TCM_026453" /note="dbxref CacaoGD:Thecc1EG026453" mRNA complement(join(38342241..38342834,38342938..38343011, 38343092..38343193,38343617..38343709,38343841..38343885, 38344035..38344085,38344242..38344313,38344428..38344515, 38347155..38347714)) /locus_tag="TCM_026453" /product="TATA binding protein 2" /inference="alignment:exonerate- protein:2:ricco:29950.m001154.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001402t1" /inference="similar to AA sequence:ricco:29950.m001154" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g15043t2" CDS complement(join(38342834,38342938..38343011, 38343092..38343193,38343617..38343709,38343841..38343885, 38344035..38344085,38344242..38344313,38344428..38344515, 38347155..38347552)) /locus_tag="TCM_026453" /note="dbxref ricco:29950.m001154; paralog of Thecc1EG001402t1" /codon_start=1 /product="TATA binding protein 2" /protein_id="EOY11205.1" /db_xref="TAIR:AT1G55520.2" /db_xref="UniProtKB/TrEMBL:UniRef50_P28147" /translation="MATSTSGNPIPNSSLPLHDRVAIVTGASRGIGRAIALHLASLGA KLVINYTSNKVQADLVTAEINSSFLGNTPLALTVQADVSDPSQVKSLFDIAEQFFNSQ PYISVNSAGVSNDKGISVADTPVEEFDRILRNIVSTVNLDCKLDLKQIALQARNAEYN PKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFK DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGK IVITGAKVRDETYTAFENIYPVLTEFRKNQQ" gene complement(38347855..38350461) /locus_tag="TCM_026454" /note="dbxref CacaoGD:Thecc1EG026454" mRNA complement(join(38347855..38348823,38349594..38349959, 38350125..38350461)) /locus_tag="TCM_026454" /product="NAD(P)-binding Rossmann-fold superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma16g04630.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026455t1" /inference="similar to AA sequence:ricco:29950.m001148" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g04345t00001" CDS complement(join(38348415..38348823,38349594..38349959, 38350125..38350258)) /locus_tag="TCM_026454" /note="dbxref ricco:29950.m001148; paralog of Thecc1EG026455t1" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein" /protein_id="EOY11206.1" /db_xref="TAIR:AT3G03980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q08632" /translation="MWYGCKSPVNPAVNVLQQDNWLKKDQQGNKDNINSNATSGTIKI STNPLPLKDRVAIVTGSSRGMGRVIATHLAELGAKLVINYTSSSEQADRVATQINTRY PGDSPRAVTVKADVSDPAQVKLLFDSAEQAFGSEIHVLVNSAGVLDPKYPKIADTSLE DFDRIFSVNTRGAFLCAKEAANRLKRGGGGRIILLSSSMVAALRPGFGAYAASKAAIE AMIKIMAKELKGAGITANCVAPGPIATEMFFAGKSEEMVQRVIDECPHNRLGQSDDVA PVVGFLATDASEWVNGQIIRVNGGYV" gene complement(38350117..38356364) /locus_tag="TCM_026455" /note="dbxref CacaoGD:Thecc1EG026455" mRNA complement(join(38350117..38351441,38352168..38352338, 38352660..38352674,38352792..38355858,38355975..38356364)) /locus_tag="TCM_026455" /product="Pentatricopeptide repeat superfamily protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene21729" /inference="similar to AA sequence:Phytozome:POPTR_0013s05550.1" /note="transcript variant 1; alternatively spliced; quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.49 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11042t1" mRNA complement(join(38350117..38351444,38352168..38352338, 38352660..38355858,38355975..38356364)) /locus_tag="TCM_026455" /product="Pentatricopeptide repeat (PPR) superfamily protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene21729" /inference="similar to AA sequence:Phytozome:POPTR_0013s05550.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is medium, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:PASA:2:TSA:puevd3b025587t1a2; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2200t2" CDS complement(join(38350645..38351441,38352168..38352338, 38352660..38352674,38352792..38355858,38355975..38356094)) /locus_tag="TCM_026455" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein isoform 1" /protein_id="EOY11207.1" /db_xref="Phytozome:POPTR_0013s05550.1" /db_xref="TAIR:AT4G13650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SVP7" /translation="MFLNQLSLHGTSTYSFFYHFPSLKLKPHQISFNHSQNFQKYFNR KWSRLRLACFNTNAISNSFDELSIEENEGNSKEVSFLYWMENRGVKANQQTFLWLLEG CLNSGSIEQGKKLHGKILKMGFSKEHVLSEKLMDLHIASGDLDAAINVFDDMPKRNVF SWNKMISGFISKKLTNKVLRFYSRMVVENVNPNERTFAGILKACSGSNVWFEYVEQIH ARIIRHGFGFSSFVCNPLIDLYTKNGFIDSAIKVFDKLYVKDSVSWVAMISGLSQNGY EEQAILLFSEMHISGICPTPYVFSSVLSACTKIEFFKLGEQLHSLVFKQGFSSETYVC NALVTLYSRSGSLVSAEQIFSNMQLRDGVTYNSLISGLAQCGYSDRALELFEKMHHDC LKPDCVTVASLLGACASLGALYTGKQLHSYAIKAGFSMDIIVEGSLLDLYLKCSDIET AYEFFSTTETENVVLWNVMLVAYGQLDNLSESFHIFRQMQIEGLVPNQFTYPSILRTC TSLGALDLGEQIHSQVIKTGFQYNVYVCSVLIDMYAKLGKLETALEILRKLPEEDVVS WTAMIAGYTQHDMFYEALELFGEMLNRGIQSDNIGLSSAISACAGIQALSQGQQIHAQ SFLSGFSDDLSIGNALVSLYARCSQRQDAYKAFKKIDNKDNISWNALISGFTQSGFCE EALQVFSQMNKAGLEATLYTCISSVSAAANTANIKQGKQIHAMIIKKGYDLEIEASNV LITLYAKCGSIDDAKKEFLEIPEKNEVSWNAMITGYSQHGYGIEAIDLFEKMKQVGVT PNPVTLVGVLSACSHVGLVDEGLDYFDSMSKEHGLVPKPEHYACVVDLLGRAGLLCRA RKFVEDMPIEPDAIIWRTLLSACAVHKNVDIGEFAAHHLLKLEPQDSASYVLLSNLYA VSKKWDSRDQTRQMMKERGVKKEPAQSWIEVKNSIHAFFVGDRLHPLAEKIYEHLEDL NKRAAEIGYVQDRYSRFSDVEQGQKDPTVHIHSEKLAIAFGLLSLPSAIPVRVIKNLR VCNDCHNWIKFVSKISNQLIIVRDAYRFHHFEVTIHCGENIKSTFDELILFEPHFPVS ATGLKFEKVQDATTSISHCRCLSRKPEAICSDVRQEETAMEESSSSLSLKDRVAIVTG GSRGIGRAIAIHLHSLGARVALNYASNSTQADLLASELNASYTPEHPRAVAIKADVSD PEQVKLLFDRAEQEFGSKIHILVNCAGVMDQKYPTLANTTIEDWDTTFNINTKGSFLC CREAANRLTREGGGRIIMISTSLVGSLLPGYAAYVASKAAVEAMTKILAKELKGTRIT ANCVAPGPVATELFFAGKTEETIKRFADACPLGRLGEPKDIAGIVGFLSSDAGEWTNG QVIRVNGGVVV" CDS complement(join(38352760..38355858,38355975..38356094)) /locus_tag="TCM_026455" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein isoform 2" /protein_id="EOY11208.1" /db_xref="Phytozome:POPTR_0013s05550.1" /db_xref="TAIR:AT4G13650.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SVP7" /translation="MFLNQLSLHGTSTYSFFYHFPSLKLKPHQISFNHSQNFQKYFNR KWSRLRLACFNTNAISNSFDELSIEENEGNSKEVSFLYWMENRGVKANQQTFLWLLEG CLNSGSIEQGKKLHGKILKMGFSKEHVLSEKLMDLHIASGDLDAAINVFDDMPKRNVF SWNKMISGFISKKLTNKVLRFYSRMVVENVNPNERTFAGILKACSGSNVWFEYVEQIH ARIIRHGFGFSSFVCNPLIDLYTKNGFIDSAIKVFDKLYVKDSVSWVAMISGLSQNGY EEQAILLFSEMHISGICPTPYVFSSVLSACTKIEFFKLGEQLHSLVFKQGFSSETYVC NALVTLYSRSGSLVSAEQIFSNMQLRDGVTYNSLISGLAQCGYSDRALELFEKMHHDC LKPDCVTVASLLGACASLGALYTGKQLHSYAIKAGFSMDIIVEGSLLDLYLKCSDIET AYEFFSTTETENVVLWNVMLVAYGQLDNLSESFHIFRQMQIEGLVPNQFTYPSILRTC TSLGALDLGEQIHSQVIKTGFQYNVYVCSVLIDMYAKLGKLETALEILRKLPEEDVVS WTAMIAGYTQHDMFYEALELFGEMLNRGIQSDNIGLSSAISACAGIQALSQGQQIHAQ SFLSGFSDDLSIGNALVSLYARCSQRQDAYKAFKKIDNKDNISWNALISGFTQSGFCE EALQVFSQMNKAGLEATLYTCISSVSAAANTANIKQGKQIHAMIIKKGYDLEIEASNV LITLYAKCGSIDDAKKEFLEIPEKNEVSWNAMITGYSQHGYGIEAIDLFEKMKQVGVT PNPVTLVGVLSACSHVGLVDEGLDYFDSMSKEHGLVPKPEHYACVVDLLGRAGLLCRA RKFVEDMPIEPDAIIWRTLLSACAVHKNVDIGEFAAHHLLKLEPQDSASYVLLSNLYA VSKKWDSRDQTRQMMKERGVKKEPAQSWIEVKNSIHAFFVGDRLHPLAEKIYEHLEDL NKRAAEIGYVQDRYSRFSDVEQGQKDPTVHIHSEKLAIAFGLLSLPSAIPVRVIKNLR VCNDCHNWIKFVSKISNQLIIVRDAYRFHHFEGGSCSCRDYW" mobile_element 38356439..38356547 /note="source:CACAO_Helitron_SS_E51_scaffold_6 350 447" /mobile_element_type="transposon:Helitron" gene 38357122..38360162 /locus_tag="TCM_026456" /note="dbxref CacaoGD:Thecc1EG026456" mRNA join(38357122..38357302,38357434..38357505, 38357586..38357788,38358296..38358359,38358460..38358716, 38358834..38358872,38359218..38359336,38359451..38359564, 38359798..38360162) /locus_tag="TCM_026456" /product="PHD finger protein-related isoform 1" /inference="alignment:exonerate- protein:2:ricco:29950.m001145" /inference="similar to AA sequence:ricco:29950.m001145" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g12128t00001" mRNA join(38357122..38357302,38357434..38357505, 38357586..38357788,38358296..38358359,38358460..38359074) /locus_tag="TCM_026456" /product="PHD finger protein-related isoform 2" /inference="alignment:exonerate- protein:2:ricco:29950.m001145" /inference="similar to AA sequence:ricco:29950.m001145" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:PASA:2:TSA:puevd3b025588t1a2; inference alignment:Newbler:10:TSA:cgbaP2_g12128t00001" CDS join(38357257..38357302,38357434..38357505, 38357586..38357788,38358296..38358359,38358460..38358716, 38358834..38358872,38359218..38359328) /locus_tag="TCM_026456" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29950.m001145" /codon_start=1 /product="PHD finger protein-related isoform 1" /protein_id="EOY11209.1" /db_xref="TAIR:AT1G54390.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HWW1" /translation="MAIARTGVYVDDYLEYASTLPAELQRLLNTIRELDERSQSMINH TRQQTKYCLGLAAKRGNGNSYFNNSHEDEDTIEKMRKDIEASQENALSLCTEKVLLAR QAYDLIDSHVKRLDEDLTYFAEDLKQEGKIPPDEPAILPPLPIVPKLEKRKHFYGTPQ SKRLEYRDRDWDRERDRDFELMPPPGSHKKDFATPLDVEQPIDPNEPTYCVCHQVSFG DMIACDNENCQGGEWFHYACVGLTPETRFKGKWYCPTCRMLPQCQ" CDS join(38357257..38357302,38357434..38357505, 38357586..38357788,38358296..38358359,38358460..38358809) /locus_tag="TCM_026456" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29950.m001145" /codon_start=1 /product="PHD finger protein-related isoform 2" /protein_id="EOY11210.1" /db_xref="TAIR:AT1G54390.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HWW1" /translation="MAIARTGVYVDDYLEYASTLPAELQRLLNTIRELDERSQSMINH TRQQTKYCLGLAAKRGNGNSYFNNSHEDEDTIEKMRKDIEASQENALSLCTEKVLLAR QAYDLIDSHVKRLDEDLTYFAEDLKQEGKIPPDEPAILPPLPIVPKLEKRKHFYGTPQ SKRLEYRDRDWDRERDRDFELMPPPGSHKKDFATPLDVEQPIDPNEPTYCVCHQVLPF YSLFCTSNYCCACFHCFFDLKALIQN" gene 38359746..38364794 /locus_tag="TCM_026457" /note="dbxref CacaoGD:Thecc1EG026457" mRNA join(38359746..38360230,38361544..38361868, 38362665..38364000,38364132..38364794) /locus_tag="TCM_026457" /product="ARM repeat superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s05520.1" /inference="similar to AA sequence:ricco:29950.m001144" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g15045t1" mobile_element 38360239..38360270 /note="source:CACAO_on_E52_scaffold_7 9425 9456" /mobile_element_type="transposon:TIR/hAT" CDS join(38362669..38364000,38364132..38364611) /locus_tag="TCM_026457" /note="dbxref ricco:29950.m001144" /codon_start=1 /product="ARM repeat superfamily protein" /protein_id="EOY11211.1" /db_xref="TAIR:AT1G54385.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5XVI1" /translation="MMGRNLSPILRRELANLDKDADSRKSAMKALKSYVRDLDSKAIP VFLAQVSETKETGSVSGEYTISLYEVLARVHGVKIVPQIDSIMSTIIKTLASSAGSFP LQQACSKVVPAIARYGIDPTTPEDKKRHIIHSLCKPLTESLLGSQESLSSGAALCLKA LVESDNWRFASDEMVNKVCQNVAAALEEKSTQTNAHMGLVMALAKQNALIVEAYARLL IKSGLRISNAGLAEGNSQKRFSAIQMINFLMKWLDPRSMFSEVELIMEEMEKCQSDQM AYVKGAAYEALQTAKKIAQEEGSKLENSCGSVTGSNYGRRDNSRRRNLVTNGDRSPAT ASPESQTLDSFMESDSLIESPVSMTQISRNMEYDQRSVNRKLWRYENGGVDVSLKDGL FSAVARGSSICDSPFDHHELSNHGSEYTEEFAGFLQRSPRNRLPRSATPSPQRSRSRI NVDNLFTTPRKLIRSLQDPNDLNSDYSEKQARRFRSPSSEKFGWSPMANPNGFRRGMI YEVKGNGHLYTDGDEFQGVSESVSSTDDSPADIDVQASCEAVSKNKTETQDFQNEKAR KKTVFKMLFGLFFIILAVLTSFLWTEVQDEGFQVVPT" gene complement(38365164..38367557) /locus_tag="TCM_026458" /note="dbxref CacaoGD:Thecc1EG026458" mRNA complement(join(38365164..38365468,38365618..38366088, 38366242..38367115,38367400..38367557)) /locus_tag="TCM_026458" /product="NDH-dependent cyclic electron flow 5, putative" /inference="alignment:exonerate- protein:2:ricco:29950.m001143" /inference="similar to AA sequence:ricco:29950.m001143" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc245t3" CDS complement(join(38365274..38365468,38365618..38366088, 38366242..38366745)) /locus_tag="TCM_026458" /note="dbxref ricco:29950.m001143" /codon_start=1 /product="NDH-dependent cyclic electron flow 5, putative" /protein_id="EOY11212.1" /db_xref="TAIR:AT1G55370.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IPP4" /translation="MACSSLFSPNFTPFSSPTPTSHHLCYHPHLPSTSLQRSNNRREF PLASVASIPYQPINVDYLEGEFSGHGVTFEGIGDSCVAKMGLDNGSTATLMLPSGLIT SYKAPMWHGGTVELLHTSVSEGDEGEAVIQGGVSLALNCEGDSEVSWSPSTWALRDIR GNSKNSIKVELISRENMVETRHIVTLQEDVLSSEITVSNSKSSPLQWTGSIISHLTVS SPDATYALGLEGSNFLNMPPFLSNFGIIPPDFDLENDSYIGQLWSQMGLKRFCSGLGQ RNQKNASEAEKKQRESEEMEGEEEGYKQLKEQMSRIYTSAPRFFTLIDRGRRNSVEVG REGFDELYMFSPGSSHEIYGEYAFICVGQSATLKPIILGPGEVWRGCQHLHNPNM" gene complement(38367330..38369721) /locus_tag="TCM_026459" /note="dbxref CacaoGD:Thecc1EG026459" mRNA complement(join(38367330..38368004,38368107..38368541, 38369188..38369721)) /locus_tag="TCM_026459" /product="NDH-dependent cyclic electron flow 1" /inference="similar to AA sequence:ricco:29950.m001142" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc2651t3_C2" CDS complement(join(38367810..38368004,38368107..38368541, 38369188..38369616)) /locus_tag="TCM_026459" /note="dbxref ricco:29950.m001142" /codon_start=1 /product="NDH-dependent cyclic electron flow 1" /protein_id="EOY11213.1" /db_xref="TAIR:AT1G64770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94AQ8" /translation="MASLLSFSLPKPNIIKASSASPATTTLPIPEALDEKFGRKGIKF SESNNIPFVELTVRNGSSLRLRIPDAHVTSYKPKVYWKDDGLEEILYTVPAGGGDSTK AKGGIGLVINDASDKSSKGSLLSGAGWTVKDADNDSIDALQVELSCTAGTLNISYVVS LYPLSIATAVIVKNNGRKDVTLTSAILSHLNFKKRGRTAINGLKGCSYCSHPPLSSPF ELLSPSEAMKSESSGWFGSENEKKPGVWTTQDVPITILKNKLSRVYAAPPSERLKAIY NTPPSKYETLDQDRELFFRVIRMGFEDIYLSSPGSLSEKYGKEYFICTGPASMMVPLV VKPGENWRGAQVIEHDNL" gene complement(38369826..38374188) /locus_tag="TCM_026460" /note="dbxref CacaoGD:Thecc1EG026460" mRNA complement(join(38369826..38370341,38370471..38370528, 38370693..38370917,38371313..38371407,38371595..38371717, 38371799..38371876,38371963..38372035,38372228..38372361, 38372571..38372648,38372756..38372917,38373024..38373170, 38373280..38373542,38373711..38374188)) /locus_tag="TCM_026460" /product="TCP-1/cpn60 chaperonin family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s04980.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033394001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04790t00001" CDS complement(join(38370276..38370341,38370471..38370528, 38370693..38370917,38371313..38371407,38371595..38371717, 38371799..38371876,38371963..38372035,38372228..38372361, 38372571..38372648,38372756..38372917,38373024..38373170, 38373280..38373542,38373711..38373858)) /locus_tag="TCM_026460" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="TCP-1/cpn60 chaperonin family protein isoform 1" /protein_id="EOY11214.1" /db_xref="Phytozome:GSVIVT01033394001" /db_xref="TAIR:AT3G03960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q75HJ3" /translation="MGFSMQPYGIQSMLKEGHKHLSGLDEAVLKNIDACKQLSTITRT SLGPDGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKILVLAGKAQQEEIGDGANL TISFAGELLQNAEELIRTGLHPSEIISGYTKAINKTIEVLSELVEKGSEKMDVRNKEQ VVTRMKAAVASKQHGQEDILCSLIADACIQVCPKNPANFDVDNVRVSKLVGGGLHNCT IVRGMVLKGDAVGSIKRMEKAKVAVFASGIDTSATETKGTVLIHSAEQLENYAKTEEA KVEELIKAVADSGAKVIVSGGAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGTAA LLKLSQPKPDDLGFVDSVSVEEIGGSRVTVVRSEEGGNRVATVVLRGSTDSILDDLER AVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMV PRTLAENAGLNPMDVISKLYEKHASGNTKVGIDLGGGDSEDGVCKDASTMSIWDLYVT KFFALKYATDAACTVLRVDQIIMAKPAGGPRRDQPAGMDED" mRNA complement(join(38370318..38370341,38370471..38370528, 38370659..38370917,38371313..38371407,38371595..38371717, 38371799..38371876,38371963..38372035,38372228..38372361, 38372571..38372648,38372756..38372917,38373024..38373170, 38373280..38373542,38373711..38374100)) /locus_tag="TCM_026460" /product="TCP-1/cpn60 chaperonin family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s04980.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033394001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc118t20; inference alignment:Newbler:10:TSA:cgbaP2_g04790t00001" CDS complement(join(38370689..38370917,38371313..38371407, 38371595..38371717,38371799..38371876,38371963..38372035, 38372228..38372361,38372571..38372648,38372756..38372917, 38373024..38373170,38373280..38373542,38373711..38373858)) /locus_tag="TCM_026460" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="TCP-1/cpn60 chaperonin family protein isoform 2" /protein_id="EOY11215.1" /db_xref="Phytozome:GSVIVT01033394001" /db_xref="TAIR:AT3G03960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q75HJ3" /translation="MGFSMQPYGIQSMLKEGHKHLSGLDEAVLKNIDACKQLSTITRT SLGPDGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKILVLAGKAQQEEIGDGANL TISFAGELLQNAEELIRTGLHPSEIISGYTKAINKTIEVLSELVEKGSEKMDVRNKEQ VVTRMKAAVASKQHGQEDILCSLIADACIQVCPKNPANFDVDNVRVSKLVGGGLHNCT IVRGMVLKGDAVGSIKRMEKAKVAVFASGIDTSATETKGTVLIHSAEQLENYAKTEEA KVEELIKAVADSGAKVIVSGGAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGTAA LLKLSQPKPDDLGFVDSVSVEEIGGSRVTVVRSEEGGNRVATVVLRGSTDSILDDLER AVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMV PRTLAENAGLNPMDVISKLYEKHASGNTKVGIDLGGGDSEDGVCKDASTMSIWDLYVT K" mRNA complement(join(38370777..38371335,38371797..38371876, 38371963..38372035,38372228..38372361,38372571..38372648, 38372756..38372917,38373024..38373170,38373280..38373542, 38373711..38374100)) /locus_tag="TCM_026460" /product="TCP-1/cpn60 chaperonin family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s04980.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033394001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc118t25; inference alignment:Newbler:10:TSA:cgbaP2_g04790t00001" CDS complement(join(38371197..38371335,38371797..38371876, 38371963..38372035,38372228..38372361,38372571..38372648, 38372756..38372917,38373024..38373170,38373280..38373542, 38373711..38373858)) /locus_tag="TCM_026460" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="TCP-1/cpn60 chaperonin family protein isoform 3" /protein_id="EOY11216.1" /db_xref="Phytozome:GSVIVT01033394001" /db_xref="TAIR:AT3G03960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94K05" /translation="MGFSMQPYGIQSMLKEGHKHLSGLDEAVLKNIDACKQLSTITRT SLGPDGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKILVLAGKAQQEEIGDGANL TISFAGELLQNAEELIRTGLHPSEIISGYTKAINKTIEVLSELVEKGSEKMDVRNKEQ VVTRMKAAVASKQHGQEDILCSLIADACIQVCPKNPANFDVDNVRVSKLVGGGLHNCT IVRGMVLKGDAVGSIKRMEKAKVAVFASGIDTSATETKGTVLIHSAEQLENYAKTEEA KVEELIKAVADSGAKVIVSGGAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGTAA LLKLSQPKPDDLGFVDSVSVEEIGGSRVNFPLRKQGGLFVFLCFYLLIAKLHSACNFS SLAFMIMCYNCMNGI" gene complement(38374403..38378883) /locus_tag="TCM_026461" /note="dbxref CacaoGD:Thecc1EG026461" mRNA complement(join(38374403..38375197,38375315..38375461, 38375560..38375772,38375860..38376435,38376632..38377207, 38377757..38377833,38378502..38378754)) /locus_tag="TCM_026461" /product="Evolutionarily conserved C-terminal region 2, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s04990.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039865t2" /inference="similar to AA sequence:ricco:29950.m001140" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc688t2_C2" mRNA complement(join(38374733..38375197,38375315..38375461, 38375560..38375772,38375860..38376435,38376632..38377207, 38377757..38377833,38378529..38378883)) /locus_tag="TCM_026461" /product="Evolutionarily conserved C-terminal region 2, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0019s04990.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG039865t2" /inference="similar to AA sequence:ricco:29950.m001140" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc688t2_C2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc688t2_C2" CDS complement(join(38374961..38375197,38375315..38375461, 38375560..38375772,38375860..38376435,38376632..38377207, 38377757..38377833,38378529..38378544)) /locus_tag="TCM_026461" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29950.m001140; paralog of Thecc1EG039865t2" /codon_start=1 /product="Evolutionarily conserved C-terminal region 2, putative isoform 2" /protein_id="EOY11218.1" /db_xref="TAIR:AT3G13460.4" /db_xref="UniProtKB/TrEMBL:UniRef50_Q3MK93" /translation="MATSDQVADSLENLSLDSQAKTTKVPEPFKKDFYGDNGSYMYQQ TYGYMPYGAYSVPSSPLPAMGHDGQLHALQEYHYPSPYYQPPMQTSQASASQVEVSTS GVAEQASLSIDTNKGNSSTIASGGGLSGNNGSGSLKPTFKSSSLNPNASYKRGGLPTG NLSQGYQDPRFSYDGIQSTVPWLDMSMSSNGQSKHAANSGFSSYTNNLSSGRNQNVHP FPHVVNLHNARPSSGVAQAYGYMNHMYPNNMAYSHYGSTIRGGSGYGSYSYDSWKKGL GWYTVGNNNKSRGRGYGKENMDGLSELNKGPRVKGYKSQDDFESATLAVKDQNLPLTE SNKENNVTLVPDMEQYNKEDFPESYSDAKFFVIKSYSEDDVHKSIKYNVWASTSNGNK KLDAAFCEANDKPDGCPVFLLFSVNTSGQFVGLAEMVGPVDFNKTMEYWQQDKWTGCF PVKWHIVKDVPNTSLRHITLENNENKPVTNSRDTQEVNFEQGIQILKIFKDHSSKTCI LDDFEFYEARQKIIQEKKAKHQLLQKQVSNGQPNDDVVTDNEQNSAVAKETTDKSVEA ALIEEQPVASAAEVVKSNGDVKPVEENGSVATTEDGPANSVCVASAC" CDS complement(join(38374961..38375197,38375315..38375461, 38375560..38375772,38375860..38376435,38376632..38377207, 38377757..38377833,38378502..38378544)) /locus_tag="TCM_026461" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29950.m001140; paralog of Thecc1EG039865t2" /codon_start=1 /product="Evolutionarily conserved C-terminal region 2, putative isoform 1" /protein_id="EOY11217.1" /db_xref="TAIR:AT3G13460.4" /db_xref="UniProtKB/TrEMBL:UniRef50_Q3MK93" /translation="MATSDRILANFTPLEVADSLENLSLDSQAKTTKVPEPFKKDFYG DNGSYMYQQTYGYMPYGAYSVPSSPLPAMGHDGQLHALQEYHYPSPYYQPPMQTSQAS ASQVEVSTSGVAEQASLSIDTNKGNSSTIASGGGLSGNNGSGSLKPTFKSSSLNPNAS YKRGGLPTGNLSQGYQDPRFSYDGIQSTVPWLDMSMSSNGQSKHAANSGFSSYTNNLS SGRNQNVHPFPHVVNLHNARPSSGVAQAYGYMNHMYPNNMAYSHYGSTIRGGSGYGSY SYDSWKKGLGWYTVGNNNKSRGRGYGKENMDGLSELNKGPRVKGYKSQDDFESATLAV KDQNLPLTESNKENNVTLVPDMEQYNKEDFPESYSDAKFFVIKSYSEDDVHKSIKYNV WASTSNGNKKLDAAFCEANDKPDGCPVFLLFSVNTSGQFVGLAEMVGPVDFNKTMEYW QQDKWTGCFPVKWHIVKDVPNTSLRHITLENNENKPVTNSRDTQEVNFEQGIQILKIF KDHSSKTCILDDFEFYEARQKIIQEKKAKHQLLQKQVSNGQPNDDVVTDNEQNSAVAK ETTDKSVEAALIEEQPVASAAEVVKSNGDVKPVEENGSVATTEDGPANSVCVASAC" gene complement(38379749..38382697) /locus_tag="TCM_026462" /note="dbxref CacaoGD:Thecc1EG026462" mRNA complement(join(38379749..38380414,38381257..38381547, 38382180..38382697)) /locus_tag="TCM_026462" /product="Galactose-1-phosphate uridylyltransferase" /inference="alignment:exonerate- protein:2:ricco:29950.m001138" /inference="similar to AA sequence:Phytozome:POPTR_0019s05000.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaL_g13045t00001" CDS complement(join(38380148..38380414,38381257..38381547, 38382180..38382662)) /locus_tag="TCM_026462" /codon_start=1 /product="Galactose-1-phosphate uridylyltransferase" /protein_id="EOY11219.1" /db_xref="Phytozome:POPTR_0019s05000.1" /db_xref="TAIR:AT5G18200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HDZ4" /translation="MATPTPTRSPELRRDPVTNRWVVFSPARAKRPSDFKSKSSENPN HNSSSCPFCIGNEHQCAPEIFRVPNEPNWKHRVIENLYPALSRNLEYPIGQNGDSSID LGGWGRVVPGFGLHDVVIETPVHSVQLSDLSPSELGDVLIAYKRRIEQIKGFDSIKYV QVFKNHGASAGASLSHSHSQILSLPVVPPSVSARIGSMKEYFNQTGKCSLCEVQSKDV LINETSQFISLAPFAASFPFEIWIIPRDHSSHFDELDNEKAVDLGGLLKLMLRKMSLQ LNNPPFNFMIHTSPLQLTNSELRYSHWFLQIVPQLTGVGGFELGSGCYINPVFPEDAA KLLREVNVPIEG" gene 38384296..38391068 /locus_tag="TCM_026463" /note="dbxref CacaoGD:Thecc1EG026463" mRNA join(38384296..38384694,38385471..38385931, 38386363..38386488,38386575..38386648,38386760..38386829, 38386912..38386967,38387071..38387142,38387243..38387337, 38387552..38387618,38387717..38387846,38387931..38388149, 38388240..38388370,38388869..38389043,38389141..38389231, 38389720..38389877,38389984..38390172,38390351..38391068) /locus_tag="TCM_026463" /product="Kinase family protein" /inference="alignment:exonerate- protein:2:ricco:29950.m001136" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037217t1" /inference="similar to AA sequence:ricco:29950.m001136" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11138t2" CDS join(38385527..38385931,38386363..38386488, 38386575..38386648,38386760..38386829,38386912..38386967, 38387071..38387142,38387243..38387337,38387552..38387618, 38387717..38387846,38387931..38388149,38388240..38388370, 38388869..38389043,38389141..38389231,38389720..38389877, 38389984..38390172,38390351..38390410) /locus_tag="TCM_026463" /note="dbxref ricco:29950.m001136; paralog of Thecc1EG037217t1" /codon_start=1 /product="Kinase family protein" /protein_id="EOY11220.1" /db_xref="TAIR:AT3G03940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LID3" /translation="MPELRSGARRSKRLDDLQPPQPVDQAENWVLPAQNRTRRRVGGR GRGNAAAVAKGPSPAVPTRPTAAGRGRGIRLIDLDPEPCQVLPEAAPLAAAEPALNRV EVVADKDIAMEGGSADKIMGVEEEASTTPVPERVQVGNSPVYKIERKLGKGGFGQVYV GRRVSGGSDRTGPDAIEVALKFEHRNSKGCNYGPPYEWQVYNTLNGCYGIPWVHYKGR QGDFYILVMDMLGPSLWDVWNSLGQSMSPTMAACIAVEAISILEKLHLKGFVHGDVKP ENFLLGQPGSADEKKLYLIDLGLASKWKDAHSGQHVDYDQRPDVFRGTIRYASVHAHL GRTGSRRDDLESLAYTLIFLLKGRLPWQGYQGDNKSFLVCKKKMATSPELMCCFCPAP FRQFLEAVTNMKFDEEPNYAKLISFFESLIEPCTPLRPIRIDGALKVGQKRGRLVINL EEDEQPKKKIRLGSPATQWISVYNARRPMKQRYHYNVADSRLRQHIDKGNEDGLFISC VASAANLWALIMDAGTGFTCQVYDLSTVFLHKDWIMEQWEKNYYISSIAGANNASSLV VMSKGTPYTQQSYKVSESFPFKWINKKWKEGFHVTSMTTAGSRWGVVMSRNSGFSDQV VELDFLYPSEGIHRRWESGYRITSMAATADQAAFILSIPKRKMMDETQETLRTSAFPS AHVKEKWAKNLYIASICYGRTVC" gene 38391116..38394445 /locus_tag="TCM_026464" /note="dbxref CacaoGD:Thecc1EG026464" mRNA 38391116..38394445 /locus_tag="TCM_026464" /product="Receptor like protein 46, putative" /inference="alignment:exonerate- protein:2:ricco:28842.m000942" /inference="similar to AA sequence:Phytozome:POPTR_0001s04040.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.46 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2417t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11060t1" CDS 38391655..38394078 /locus_tag="TCM_026464" /codon_start=1 /product="Receptor like protein 46, putative" /protein_id="EOY11221.1" /db_xref="Phytozome:POPTR_0001s04040.1" /db_xref="TAIR:AT4G04220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GLC7" /translation="MANLSLLSGSYFMFFILCLSLRGSLSCLHDQREALLDLKDLLVR DMVTDNSTDLFLGGLETWNSSSECCQWILVQCNSRSSSQEVTGLNLSSLFPLRGKAST VLESVFRIKTLMSLDISYNSLHGEIPRIGFGNLTELAHLDMRGNSFNGSIPPRLFRLR NLEFLDLSVNMIEGSLPGDVGGLKKLKQLSLDANIIRGEIPEEIGNLIELRKLTLPGN QISGRIPLSISQLRKLEVLQLQNNSLSEEIPSDIGNLVNMTTLDLSKNNLSGEIPSSI QKLGKLETLQLENNKLSGEIPTWLFDLKEMKKLHLGGNRLAWNNDITITPKCTLSSLS LRSCSVSGQIPRWLSNQTDLIFLDLSENQIEGDFPQWLAEQNLGTIILSDNKLAGSLP PQLFQSRNLSVLALSRNNFSGELPEINTTSIMVLMLSENNFSGPVPKSLSNIYRLLLL DLSTNSFSGSEFPAFGEDGLIAYVDISSNKLSGKVPAALGLNLMMLSLSQNDFSGSLP QNLSNLSQLEHLDLHDNNITGEFPAFLYQLSSLQVLNLRNNSIEGSISDDLSNLSSLR ILDLSNNNLIGDIPPSLGNLTGMIDTPDVPSTLSEIFSFQVEIHDLIVNWKNSKRGLS NRNLDIYTFLDLSKNQLSGEVPPSLGSLKRLKLLNLSYNELSGNIPMSFGDLESLEAL DLSDNKLDGEIPGTFAKLQELNTLDLSNNKLAGKIPESPQLDTLIDPDIYANNSGLCG VQIDAPCEEDSQPPESPEEEKKETWFSWEAAGIGYPVGFLSSTALMSAIGYFTVTPLH HRRRHARRR" gene 38394539..38396000 /locus_tag="TCM_026465" /note="dbxref CacaoGD:Thecc1EG026465" mRNA join(38394539..38394723,38394867..38395015, 38395102..38395217,38395490..38396000) /locus_tag="TCM_026465" /product="H/ACA ribonucleoprotein complex subunit 1-like protein 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033401001" /inference="similar to AA sequence:Phytozome:POPTR_0013s05490.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaB_g14753t00001" CDS join(38394579..38394723,38394867..38395015, 38395102..38395217,38395490..38395661) /locus_tag="TCM_026465" /codon_start=1 /product="H/ACA ribonucleoprotein complex subunit 1-like protein 1" /protein_id="EOY11222.1" /db_xref="Phytozome:POPTR_0013s05490.1" /db_xref="TAIR:AT3G03920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6BVF9" /translation="MRPPRGGGGFRGGRDGGRGRGGGRGGGGRGFGRGGGGFRDEGPP AEVVEISTFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSI KMLEGIVATSYALGDKFYIDPSKLLPLAKFLPQPKGQSQAGARGGRGGGRGGGRGGGR GGGGFRGRGAPRGGRGGPRGGGRGGGFRGRGRF" gene complement(38395357..38401271) /locus_tag="TCM_026466" /note="dbxref CacaoGD:Thecc1EG026466" mRNA complement(join(38395357..38396466,38396555..38396641, 38396744..38396819,38396912..38397162,38397277..38397393, 38397541..38397615,38397731..38397952,38398075..38398188, 38398368..38398501,38400543..38401271)) /locus_tag="TCM_026466" /product="Glutamate dehydrogenase 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29950.m001132" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014809t1" /inference="similar to AA sequence:ricco:29950.m001132" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:PASA:2:TSA:puevd3b025599t1a3; alternateUTRof:Thecc1EG026466t1; inference alignment:Newbler:10:TSA:cgbaB_g06296t00001" mRNA complement(join(38395978..38396466,38396555..38396641, 38396744..38396819,38396912..38397162,38397277..38397393, 38397541..38397615,38397731..38397952,38398075..38398188, 38398368..38398501,38398676..38398743)) /locus_tag="TCM_026466" /product="Glutamate dehydrogenase 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29950.m001132" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014809t1" /inference="similar to AA sequence:ricco:29950.m001132" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:PASA:2:TSA:puevd3b025599t1a2; alternateUTRof:Thecc1EG026466t1; inference alignment:Newbler:10:TSA:cgbaB_g06296t00001" mRNA complement(join(38395988..38396466,38396555..38396641, 38396744..38396819,38396912..38397162,38397277..38397393, 38397541..38397615,38397731..38397952,38398075..38398188, 38398368..38398514)) /locus_tag="TCM_026466" /product="Glutamate dehydrogenase 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29950.m001132" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014809t1" /inference="similar to AA sequence:ricco:29950.m001132" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00548t00001; alternateUTRof:Thecc1EG026466t1; inference alignment:Newbler:10:TSA:cgbaB_g06296t00001" mRNA complement(join(38396243..38396466,38396555..38396641, 38396744..38396819,38396912..38397162,38397277..38397393, 38397541..38397615,38397731..38397952,38398075..38398188, 38398368..38398501,38400543..38400647,38400891..38401271)) /locus_tag="TCM_026466" /product="Glutamate dehydrogenase 1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:29950.m001132" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG014809t1" /inference="similar to AA sequence:ricco:29950.m001132" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06296t00001" CDS complement(join(38396281..38396466,38396555..38396641, 38396744..38396819,38396912..38397162,38397277..38397393, 38397541..38397615,38397731..38397952,38398075..38398188, 38398368..38398475)) /locus_tag="TCM_026466" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29950.m001132; paralog of Thecc1EG014809t1" /codon_start=1 /product="Glutamate dehydrogenase 1 isoform 1" /protein_id="EOY11223.1" /db_xref="TAIR:AT5G18170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q43314" /translation="MNALVATNRNFKLAARLLGLDSKLEKSLLIPFREIKVECTIPKD DGTLASFVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAK GGIGCNPGELSISELERLTRVFTQKIHDLIGVHTDVPAPDMGTGPQTMAWILDEYSKF HGYSPAVVTGKPTDLGGSLGRDAATGRGVLFATEALLNEHGKTISGQKFAIQGFGNVG SWAAQLIHEKGGKIVAVSDITGAIKNSKGIDIPSLLKHVRASKGVKGFHGGDSIDPNS ILVEDCDILIPAALGGVINRENANDIKAKFIIEAANHPTDPEADEILSKKGVIILPDI YANSGGVTVSYFEWVQNIQGFMWDEEKVNNELKTYMTKGFKDVKEMCKTHNCDLRMGA FTLGVNRVARATLLRGWGA" CDS complement(join(38396281..38396466,38396555..38396641, 38396744..38396819,38396912..38397162,38397277..38397393, 38397541..38397615,38397731..38397952,38398075..38398188, 38398368..38398475)) /locus_tag="TCM_026466" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29950.m001132; paralog of Thecc1EG014809t1" /codon_start=1 /product="Glutamate dehydrogenase 1 isoform 1" /protein_id="EOY11224.1" /db_xref="TAIR:AT5G18170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q43314" /translation="MNALVATNRNFKLAARLLGLDSKLEKSLLIPFREIKVECTIPKD DGTLASFVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAK GGIGCNPGELSISELERLTRVFTQKIHDLIGVHTDVPAPDMGTGPQTMAWILDEYSKF HGYSPAVVTGKPTDLGGSLGRDAATGRGVLFATEALLNEHGKTISGQKFAIQGFGNVG SWAAQLIHEKGGKIVAVSDITGAIKNSKGIDIPSLLKHVRASKGVKGFHGGDSIDPNS ILVEDCDILIPAALGGVINRENANDIKAKFIIEAANHPTDPEADEILSKKGVIILPDI YANSGGVTVSYFEWVQNIQGFMWDEEKVNNELKTYMTKGFKDVKEMCKTHNCDLRMGA FTLGVNRVARATLLRGWGA" CDS complement(join(38396281..38396466,38396555..38396641, 38396744..38396819,38396912..38397162,38397277..38397393, 38397541..38397615,38397731..38397952,38398075..38398188, 38398368..38398475)) /locus_tag="TCM_026466" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:29950.m001132; paralog of Thecc1EG014809t1" /codon_start=1 /product="Glutamate dehydrogenase 1 isoform 1" /protein_id="EOY11225.1" /db_xref="TAIR:AT5G18170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q43314" /translation="MNALVATNRNFKLAARLLGLDSKLEKSLLIPFREIKVECTIPKD DGTLASFVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAK GGIGCNPGELSISELERLTRVFTQKIHDLIGVHTDVPAPDMGTGPQTMAWILDEYSKF HGYSPAVVTGKPTDLGGSLGRDAATGRGVLFATEALLNEHGKTISGQKFAIQGFGNVG SWAAQLIHEKGGKIVAVSDITGAIKNSKGIDIPSLLKHVRASKGVKGFHGGDSIDPNS ILVEDCDILIPAALGGVINRENANDIKAKFIIEAANHPTDPEADEILSKKGVIILPDI YANSGGVTVSYFEWVQNIQGFMWDEEKVNNELKTYMTKGFKDVKEMCKTHNCDLRMGA FTLGVNRVARATLLRGWGA" CDS complement(join(38396281..38396466,38396555..38396641, 38396744..38396819,38396912..38397162,38397277..38397393, 38397541..38397615,38397731..38397952,38398075..38398188, 38398368..38398475)) /locus_tag="TCM_026466" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:29950.m001132; paralog of Thecc1EG014809t1" /codon_start=1 /product="Glutamate dehydrogenase 1 isoform 1" /protein_id="EOY11226.1" /db_xref="TAIR:AT5G18170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q43314" /translation="MNALVATNRNFKLAARLLGLDSKLEKSLLIPFREIKVECTIPKD DGTLASFVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAK GGIGCNPGELSISELERLTRVFTQKIHDLIGVHTDVPAPDMGTGPQTMAWILDEYSKF HGYSPAVVTGKPTDLGGSLGRDAATGRGVLFATEALLNEHGKTISGQKFAIQGFGNVG SWAAQLIHEKGGKIVAVSDITGAIKNSKGIDIPSLLKHVRASKGVKGFHGGDSIDPNS ILVEDCDILIPAALGGVINRENANDIKAKFIIEAANHPTDPEADEILSKKGVIILPDI YANSGGVTVSYFEWVQNIQGFMWDEEKVNNELKTYMTKGFKDVKEMCKTHNCDLRMGA FTLGVNRVARATLLRGWGA" gene 38405033..38405547 /locus_tag="TCM_026468" /note="dbxref CacaoGD:Thecc1EG026468" mRNA join(38405033..38405314,38405406..38405547) /locus_tag="TCM_026468" /product="Methyltransferase-related protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s05470.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s05470.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g15049t1" CDS join(38405156..38405314,38405406..38405519) /locus_tag="TCM_026468" /codon_start=1 /product="Methyltransferase-related protein, putative" /protein_id="EOY11227.1" /db_xref="Phytozome:POPTR_0013s05470.1" /db_xref="TAIR:AT5G18150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FK55" /translation="MCPMRFLLVFFSAVLAGYVAWRTVRSSSDIDDVVSEDSDKMVAK DKQEFSFRRMVQNGFWVFVDMASGRYLWRNLKEMKTDEKVKNIRQF" gene complement(38405839..38408542) /locus_tag="TCM_026469" /note="dbxref CacaoGD:Thecc1EG026469" mRNA complement(join(38405839..38406578,38406778..38407189, 38407345..38407413,38408144..38408518)) /locus_tag="TCM_026469" /product="Chaperone DnaJ-domain superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s05460.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaL_g10515t00001" mRNA complement(join(38405845..38406594,38407345..38407413, 38408144..38408542)) /locus_tag="TCM_026469" /product="Chaperone DnaJ-domain superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s05460.1" /inference="similar to AA sequence:Phytozome:GSVIVT01033405001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09535t00001; inference alignment:Newbler:10:TSA:cgbaL_g10515t00001" CDS complement(join(38405977..38406594,38407345..38407413, 38408144..38408437)) /locus_tag="TCM_026469" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Chaperone DnaJ-domain superfamily protein, putative isoform 2" /protein_id="EOY11229.1" /db_xref="Phytozome:GSVIVT01033405001" /db_xref="TAIR:AT5G18140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HLB6" /translation="MQAHLLVGPTPVNGFYSSSSSFISNGSLSISASPFTGNWPYPHN SPRKSRNRWIPPPSSSFASAAGIDGEQNHYSVLGVARNASSADIKRAYRLLALKYHPD VSKDSQAGEMFKSIRHAYEVLSNEVTRVQYDRALTFQEDVGRSYKGKWNNSPEFEDGV RQYRWAEIKRKMQEERFGERYKVNDEYSSFYDETDDEEEDENLHQERGSFIEVLKSAF ITLFLLQTFGSLFSLTFSSLMALFDKKLDAGYKIGYVVAWVLGGRGGILLTLCISFAS WVCGKTGSSIVVLVVVAMWVGSNLARYAPLPQGALLALMYMSIKLQVDLK" CDS complement(join(38405977..38406578,38406778..38407189, 38407345..38407413,38408144..38408437)) /locus_tag="TCM_026469" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Chaperone DnaJ-domain superfamily protein, putative isoform 1" /protein_id="EOY11228.1" /db_xref="TAIR:AT5G18140.1" /translation="MQAHLLVGPTPVNGFYSSSSSFISNGSLSISASPFTGNWPYPHN SPRKSRNRWIPPPSSSFASAAGIDGEQNHYSVLGVARNASSADIKRAYRLLALKYHPD VSKDSQAGEMFKSIRHAYEDNMVAVQFCGGIGVMGVVIAYKTLNNWDSVTYNGWNFGL TSTKVWVFQARMWLPYAKLLKGGIVSRAAFPRFSFGATTLNIDLLRKEEKKGEREGER EGELWITTLMLSSEFPKYEQELLLTSYHESLLLLGLLLWIVTRVQYDRALTFQEDVGR SYKGKWNNSPEFEDGVRQYRWAEIKRKMQEERFGERYKVNDEYSSFYDETDDEEEDEN LHQERGSFIEVLKSAFITLFLLQTFGSLFSLTFSSLMALFDKKLDAGYKIGYVVAWVL GGRGGILLTLCISFASWVCGKTGSSIVVLVVVAMWVGSNLARYAPLPQGALLALMYMS IKLQVDLK" gene 38409749..38414641 /locus_tag="TCM_026470" /note="dbxref CacaoGD:Thecc1EG026470" mRNA join(38409749..38409922,38410575..38410723, 38411823..38411972,38412926..38413044,38413125..38413209, 38414002..38414048,38414226..38414641) /locus_tag="TCM_026470" /product="Adenosine-5'-phosphosulfate (APS) kinase 3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s05450.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026488t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033406001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01047t00001; inference alignment:Newbler:10:TSA:cgbaB_g01047t00001" mRNA join(38409749..38409922,38410575..38410723, 38412926..38413044,38413125..38413209,38414002..38414048, 38414226..38414641) /locus_tag="TCM_026470" /product="Adenosine-5'-phosphosulfate (APS) kinase 3 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s05450.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026488t1" /inference="similar to AA sequence:Phytozome:GSVIVT01033406001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01047t00002; inference alignment:Newbler:10:TSA:cgbaB_g01047t00001" CDS join(38410600..38410723,38411823..38411972, 38412926..38413044,38413125..38413209,38414002..38414048, 38414226..38414327) /locus_tag="TCM_026470" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG026488t1" /codon_start=1 /product="Adenosine-5'-phosphosulfate (APS) kinase 3 isoform 1" /protein_id="EOY11230.1" /db_xref="Phytozome:GSVIVT01033406001" /db_xref="TAIR:AT3G03900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6ZL22" /translation="MSTMGNSTNIFWQESPIGKLERQKLLNQKGCVVWITGLSGSGKS TLACSLSRELYTRGNLSYILDGDNLRHGLNKDLGFKADDRTENIRRVGEVAKLFADAG LICIASLISPYRKDRDACRAMLPDANFIEVFMNMPLELCEARDSKGLYKLARAGKIKG FTGIDDPYEPPLNCEIEIQQKDGDCPTPGAMAGEVVSYLEEKGYLRDH" CDS join(38410600..38410723,38412926..38413044, 38413125..38413209,38414002..38414048,38414226..38414327) /locus_tag="TCM_026470" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG026488t1" /codon_start=1 /product="Adenosine-5'-phosphosulfate (APS) kinase 3 isoform 2" /protein_id="EOY11231.1" /db_xref="Phytozome:GSVIVT01033406001" /db_xref="TAIR:AT3G03900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6ZL22" /translation="MSTMGNSTNIFWQESPIGKLERQKLLNQKGCVVWITGLSGSGEV AKLFADAGLICIASLISPYRKDRDACRAMLPDANFIEVFMNMPLELCEARDSKGLYKL ARAGKIKGFTGIDDPYEPPLNCEIEIQQKDGDCPTPGAMAGEVVSYLEEKGYLRDH" mobile_element complement(38413599..38413668) /note="source:CACAO_on_E59_A_scaffold_8 4762 4833" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(38415115..38513795) /locus_tag="TCM_026471" /note="dbxref CacaoGD:Thecc1EG026471" mRNA complement(join(38415115..38415383,38415535..38415635, 38416051..38416881,38417825..38418325,38419154..38419537, 38420521..38421081,38422155..38425151)) /locus_tag="TCM_026471" /product="NB-ARC domain-containing disease resistance protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30074.m001381" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026489t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s04360.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.37 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11235t1" CDS complement(join(38415594..38415635,38416051..38416881, 38417825..38418325,38419154..38419537,38420521..38421081, 38422155..38424659)) /locus_tag="TCM_026471" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG026489t1" /codon_start=1 /product="NB-ARC domain-containing disease resistance protein, putative isoform 1" /protein_id="EOY11232.1" /db_xref="Phytozome:POPTR_0005s04360.1" /db_xref="TAIR:AT4G26090.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AWL3" /translation="MAGCAIAIGACANVCSEAAKGIFQEIKRHMRYVFVYKKNVDKFE GKMKLLIAKRQSVQLEVVTAKRNVEEIKPHVQQWCDKVDEAINEDVKKVKDLEDKAKN KCFFDLCPNIKYRYQLSKKAEGAAAAVDELRQHGVELGSVGYRNVREVPEAPKNFRAF DSRKEICDRVIEALKDSTTSMIGVYGTGGVGKTTLVNEVARRVQEDKLFGWVAKATVT RTPDIKNIQYEIAESLGLKLNETESGGERARLLLKRLKEEQQRVLVVLDDIWASLDLQ QVGIPLGDQHKGCKILLTSRNRDILTNQMDAKKAFVIDVLKETESWDLFKRTVENHFE DSELRSVATEVAKKCEGLPVAIVTVATALRNQPIYAWNDANLQLQRPSPSNFTGIPHA VYSAIQFSYNNLESEELRQTFLLCCLLGHNARTEDLVRYGLGLRSFENVNKVEDTRNR VLTLVRKLKAFCLLRDSYSDDRFDMHDFDCDVALAIASRDNHAFALKHKGVFDDWPDE ERMRNFKMFSLSFDSVEKLPHELECPLLDFFSMGSKDFDVEMPAKFFEKMKNLKVLDL LKMKFSSINLPTSLRALCLNQCVLGDMINLGKLKNLEIFSLFRCSSVTLPKEIGQLTK LRLLDLSNCHKLIISAGVLSSLSKLEELSIGTSFVEWDLGSNARLAELKDLSGLTTLD VCIPDADIVLKDLFSEKLRRYNIVIGSETGWYERIEYSRILKLKVGTSIDNLGDGVLR LLKETEALYLEGPEGVKIALNNREGFLHLKHLHIEGASEIQYIMNDTAAVDRIAFQQL RSLKLVFLPELISFCSKNKSGGSTSTPQHESALFGEEMDFPCLEDLSLRFINVERIWH NQFSIRSGCTQTLTNLSITGCNNLKHLLSFSMAKSLTHLKSFDVVGCKCLREIIFTED IEEDMISQIFPKLEVLQLHELPNLTRFYRGSNCEFPLLEKLIIRDCPTFETFISKTTV VNEIHIIPSKWPSLKRMMVYGCNKVEIFASENLLSFGESTNQQPLFWVNEVTFPNLEE LTLSGNDIMKEIWHGQLRAECDEGKRCIVFTRLKYLKLSCLPTLASFCLGDQIFEFPA LENMIVTACPKMKIFCRGDLSTPQLRKVISKEKRWGIDWEGKEEGWWEVDLKTTVKWM FENKIAYCDVRLSDTSELMKIWSRNPQEILTFKYLEKLEVDDCSTLRFLFTLSMALGL PQLRELIVKNCIVMEHIIIEEGSDAQVANKTVFLLLRSITLESCADLASFYQGSKILE CPSLEGVNLSNCPKMFTFASAFSREKRIEMIDDVDGGNATRLSKGIAHTAFFDNTVAF PRLHSLHIEGTRELRKIWDDKVTMNSFCNLRYLKVKDCERVSNIFPFNMMERLQKLIF LRIVNCDSLEEIIGPQGLNSNESHAVTATELRPSELPELTLLSKEEIPLGEVVFNKLA YLKVSRWGKLKNLVPSLTSFKNLETLEVSECHGLRNLVTLPVAKSMVLLEFMKITDCQ MLEEIIAFTSDEVMDGIFFSLWYLELGGLPSVSRFCSGNYKLGFPSLREVIMRQCPKM EIFSKGELSTPKLHRIQLTEGEYVGLWEGNLNATIQQLFKKKNVQNCEEETKVSL" mRNA complement(join(<38418091..38418325,38419154..38419537, 38420521..38421081,38422155..38425043,38513738..38513795)) /locus_tag="TCM_026471" /product="NB-ARC domain-containing disease resistance protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30074.m001381" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026489t1" /inference="similar to AA sequence:Phytozome:GSVIVT01023444001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.40 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11235t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11235t1" CDS complement(join(<38418092..38418325,38419154..38419537, 38420521..38421081,38422155..38424659)) /locus_tag="TCM_026471" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG026489t1" /codon_start=1 /product="NB-ARC domain-containing disease resistance protein, putative isoform 2" /protein_id="EOY11233.1" /db_xref="Phytozome:GSVIVT01023444001" /db_xref="TAIR:AT4G27190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HVH2" /translation="MAGCAIAIGACANVCSEAAKGIFQEIKRHMRYVFVYKKNVDKFE GKMKLLIAKRQSVQLEVVTAKRNVEEIKPHVQQWCDKVDEAINEDVKKVKDLEDKAKN KCFFDLCPNIKYRYQLSKKAEGAAAAVDELRQHGVELGSVGYRNVREVPEAPKNFRAF DSRKEICDRVIEALKDSTTSMIGVYGTGGVGKTTLVNEVARRVQEDKLFGWVAKATVT RTPDIKNIQYEIAESLGLKLNETESGGERARLLLKRLKEEQQRVLVVLDDIWASLDLQ QVGIPLGDQHKGCKILLTSRNRDILTNQMDAKKAFVIDVLKETESWDLFKRTVENHFE DSELRSVATEVAKKCEGLPVAIVTVATALRNQPIYAWNDANLQLQRPSPSNFTGIPHA VYSAIQFSYNNLESEELRQTFLLCCLLGHNARTEDLVRYGLGLRSFENVNKVEDTRNR VLTLVRKLKAFCLLRDSYSDDRFDMHDFDCDVALAIASRDNHAFALKHKGVFDDWPDE ERMRNFKMFSLSFDSVEKLPHELECPLLDFFSMGSKDFDVEMPAKFFEKMKNLKVLDL LKMKFSSINLPTSLRALCLNQCVLGDMINLGKLKNLEIFSLFRCSSVTLPKEIGQLTK LRLLDLSNCHKLIISAGVLSSLSKLEELSIGTSFVEWDLGSNARLAELKDLSGLTTLD VCIPDADIVLKDLFSEKLRRYNIVIGSETGWYERIEYSRILKLKVGTSIDNLGDGVLR LLKETEALYLEGPEGVKIALNNREGFLHLKHLHIEGASEIQYIMNDTAAVDRIAFQQL RSLKLVFLPELISFCSKNKSGGSTSTPQHESALFGEEMDFPCLEDLSLRFINVERIWH NQFSIRSGCTQTLTNLSITGCNNLKHLLSFSMAKSLTHLKSFDVVGCKCLREIIFTED IEEDMISQIFPKLEVLQLHELPNLTRFYRGSNCEFPLLEKLIIRDCPTFETFISKTTV VNEIHIIPSKWPSLKRMMVYGCNKVEIFASENLLSFGESTNQQPLFWVNEVTFPNLEE LTLSGNDIMKEIWHGQLRAECDEGKRCIVFTRLKYLKLSCLPTLASFCLGDQIFEFPA LENMIVTACPKMKIFCRGDLSTPQLRKVISKEKRWGIDWEGKEEGWWEVDLKTTVKWM FENKIAYCDVRLSDTSELMKIWSRNPQEILTFKYLEKLEVDDCSTLRFLFTLSMALGL PQLRELIVKNCIVMEHIIIEEGSD" mobile_element 38424857..38424982 /note="source:CACAO_Helitron_E81_scaffold_3 1948 2087" /mobile_element_type="transposon:Helitron" mobile_element 38424992..38425525 /note="source:CACAO_Helitron_E81_scaffold_3 2022 2557" /mobile_element_type="transposon:Helitron" mobile_element 38428153..38428490 /note="source:CACAO_Helitron_E81_scaffold_3 890 1223" /mobile_element_type="transposon:Helitron" mobile_element 38428599..38428682 /note="source:CACAO_Helitron_E81_scaffold_3 2164 2252" /mobile_element_type="transposon:Helitron" mobile_element complement(38430279..38430532) /note="source:CACAO_Mutator_E714_scaffold_3 1340 1595" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(38432031..38432339) /note="source:INTACT72F_F343_scaffold_2-int 496 772" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 38435958..38438733 /note="source:INTACT1330F_F382_scaffold_8-int 3686 6457" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 38438835..38442355 /note="source:INTACT1330F_F382_scaffold_8-int 6469 9984" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 38448790..38449033 /note="source:INTACT1330F_F382_scaffold_8-int 563 806" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 38449134..38450414 /note="source:CACAO_M_E3969_F127_scaffold_1 867 2160" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 38450928..38450981 /note="source:scaffold_6_CACTA_0699 2694 2747" /mobile_element_type="transposon:TIR/CACTA" mobile_element 38451007..38451431 /note="source:CACAO_Helitron_E81_scaffold_3 1287 1683" /mobile_element_type="transposon:Helitron" mobile_element 38451531..38451666 /note="source:CACAO_Helitron_E81_scaffold_3 2127 2255" /mobile_element_type="transposon:Helitron" mobile_element 38451804..38451921 /note="source:CACAO_Helitron_E81_scaffold_3 1695 1801" /mobile_element_type="transposon:Helitron" mobile_element 38453802..38453855 /note="source:scaffold_6_CACTA_0699 2699 2752" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(38454060..38454239) /note="source:CACAO_Mutator_E592_scaffold_3 3582 3756" /mobile_element_type="transposon:TIR/Mutator" mobile_element 38454093..38454566 /note="source:CACAO_PIF_E119_scaffold_3 1775 2270" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(38454708..38454790) /note="source:CACAO_Mutator_E1430_scaffold_6 1305 1391" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(38455072..38455110) /note="source:scaffold_4_CACTA_0511 2724 2765" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(38455129..38455217) /note="source:CACAO_Mutator_E39_scaffold_1 10619 10710" /mobile_element_type="transposon:TIR/Mutator" mobile_element 38456750..38456786 /note="source:CACAO_Helitron_E81_scaffold_3 2270 2306" /mobile_element_type="transposon:Helitron" mobile_element complement(38459688..38460103) /note="source:INTACT1811F_F10_scaffold_10-int 3357 3778" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(38460035..38483598) /locus_tag="TCM_026473" /note="dbxref CacaoGD:Thecc1EG026473" mRNA complement(join(38460035..38460697,38462572..38462701, 38464024..38464124,38466272..38467102,38468120..38468614, 38468987..38469352,38470611..38471021,38471138..38471626, 38472001..38474515,38483489..38483598)) /locus_tag="TCM_026473" /product="NB-ARC domain-containing disease resistance protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g08440.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026489t1" /inference="similar to AA sequence:Phytozome:POPTR_0185s00200.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.10 coverage" CDS complement(join(38462701,38464024..38464124, 38466272..38467102,38468120..38468614,38468987..38469352, 38470611..38471021,38471138..38471626,38472001..38474514)) /locus_tag="TCM_026473" /note="paralog of Thecc1EG026489t1" /codon_start=1 /product="NB-ARC domain-containing disease resistance protein, putative" /protein_id="EOY11234.1" /db_xref="Phytozome:POPTR_0185s00200.1" /translation="MEGCAIGPCANVCSEAAKGIFQEIKRHMRYVFVYKKNVDKFEGK MKSLIAKRQSVQLEVETAERNVEKIKPEVKLWCDRVDKAINEDVKTVKDLEDKAKNKC FFDLRPNIKSRYQLSKKAEEGAAAVDELLQQGGFDKVGYRDVPEAPEAPKNFRAFDSR KEIFDRVIEALKDSTTSMIGVYGTGGVGKTTLVNEVARRVQEDNLFGWVAKATVTRTP NIEKIQDEIAESLKLELKEKSIQERARLLLARLKQEKKKILIVLDDIWARLDLEQVGI PSEDQQEGCKILLTSRNQNVLTNEMDAKKTFVMDVLEEKEAWELFKKMAENDFENRNP FRSVATEVAKKCEGLPVSIVTVARALRNKDIHAWKDASLKFQRPSPSNFTGIPRAVYS AIELSYNNLESGELKQAFLLCGVLGHNARVEDLVRYGMGLRLFDNVKTVEDTRNRVLT LVSDLKAFCLLRDSYSHERFDLHDFDCDVALAIASRDNHAFALKHNGVFDDWPDEERM RKFKMLSLSFDSVEKFPHELECPQLDFFCMGSNDSGVEMPINFFQKMENLKVLDLIKM KFSSISLPTSLRTLCLNQCVLGDMVNLGKLKNLEILNLSGSDIEMLPKETGQLTKLRL LDVSDCYNLKIPAGVLSNLSKLEELYMGRSFERWNQGSDARLDELRDLPYLTTLSARI PDAKIVPYDLFSLFAEKLERYRIFIGNDLYWHGEIEFPRAVKLILNTNINQLDDGLQC LLMKSTAFYLEGLQGAKIVFSKVGNREGLLHLKHIHIRFASEIQYIMKDNDAIDKIEF QQLRSLKLRRLPELISFCSKNRSGGSTSTPQHDLALFGEEMKFPSLEKLELASLNVER IWPNQFSIISDYPQNLTNLTVEDCHNLKHILSFSVSRSLTHLKSFVINRCNGLKEIIF TEDIKEDMMSQVFPKLELLEFQYLPNLTRLCHGSNFEFPLLKELFIRDCLTYKTFISK STLTNEIPIIQEVEENNAEINVPHLFNEKMKFPCLEKLQVDSLNVERIWSNQFSIISD YSQNLTSLSIQNCHNLKHILSFSVSRTLAHLKSFEIKGCKCLKEIISTEDIEEDMMSQ AFLKLELLGLRDLPNLTRFCHGSKFEFPLLKELIIGDCPAFEAFFSKSIVVTFPNLKE LILERNGIMKEIWRGQFRAECHEVKGRIAFTLLKCLKLSDLPTLASFCSGDQIFEFPT LEKMIVRECPKMKIFCQGDLSTSQLQKVKLSEFEDEEKGWWEGDLNNTIKRMFEEKVG YCNLRLSDTSELMEIWSRNPQEILSFKYLEKLEVSDCSTLRCLFTLSMALSLPQLREM EVKSCTEMEHIIIEEGPHKQVSNKIVFPVLRSIALKSCADLASFYQGSKMLEFPSLER VKVVGCSQMFAFASAFSREQRREMIDDGGNTTRLSKGIADAVFFDNMVAFPSLYYLVM EGMGELRKIWDDKVTMNSFCNLQYLMVKDCERLSNIFPLNMVERLQKLNQLNIVNCDS LEEIIEPQGLKSNESHAATVTELRLSELPELTHLSKEEIPLGEVIFQLEILKVLRCGK LKSLVPSSVSFKKLILLEVSKCHSLMNLVTLSVAKSMVLLEQMSITDCQMLEEIIAFT SDEVMDGIIFSQLWYLELGGLPSLSRFCSGNYSLGFPSLENVITRQCPKMEIFSKGEL SAPKLQEIKSTEGEYVGLWEGNLNTTIQQLFKEKGIVGAMPNKAYQAFQARPSTREGM VVALFWDTL" mobile_element complement(38462744..38462899) /note="source:INTACT15_F109_scaffold_3-int 4369 4526" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 38463836..38463896 /note="source:INTACT1432F_F101_scaffold_9-int 12219 12276" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 38474712..38474848 /note="source:CACAO_Helitron_E81_scaffold_3 1948 2087" /mobile_element_type="transposon:Helitron" mobile_element 38474858..38475057 /note="source:CACAO_Helitron_E81_scaffold_3 2022 2254" /mobile_element_type="transposon:Helitron" mobile_element 38475627..38476038 /note="source:CACAO_M_E71745_F215_scaffold_10 70 483" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 38476041..38476485 /note="source:INTACT411_F19_scaffold_10-int 2660 3115" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 38476486..38476916 /note="source:INTACT456_F19_scaffold_9-int 81 547" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 38476918..38477918 /note="source:CACAO_M_S_E99646_F215_scaffold_9 440 1437" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(38479332..38479439) /note="source:scaffold_5_CACTA_0582 1275 1381" /mobile_element_type="transposon:TIR/CACTA" mobile_element 38479821..38479964 /note="source:CACAO_on_E459_scaffold_2 3 131" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(38482053..38482531) /note="source:scaffold_10_CACTA_0140 1206 1704" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(38482557..38483218) /note="source:scaffold_10_CACTA_0140 302 978" /mobile_element_type="transposon:TIR/CACTA" gene 38483696..38485225 /locus_tag="TCM_026474" /note="dbxref CacaoGD:Thecc1EG026474" mRNA join(38483696..38484029,38484749..38484802, 38484979..38485225) /locus_tag="TCM_026474" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026470t1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.18 coverage" CDS join(38483964..38484029,38484749..38484802, 38484979..38485080) /locus_tag="TCM_026474" /note="paralog of Thecc1EG026470t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11235.1" /translation="MPCYVAPLHVQVFMNMPLEMCEVVGFTDIDDPYEPPLNCEIEIQ QKDGDCPTPGAMAGEVVFYLEDKGYLQDH" gene complement(38486033..38487158) /locus_tag="TCM_026475" /note="dbxref CacaoGD:Thecc1EG026475" mRNA complement(join(38486033..38486350,38486765..38487158)) /locus_tag="TCM_026475" /product="Disease resistance protein RPS2, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g39450.2.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026489t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s04330.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11244t2" CDS complement(join(38486309..38486350,38486765..38487106)) /locus_tag="TCM_026475" /note="paralog of Thecc1EG026489t1" /codon_start=1 /product="Disease resistance protein RPS2, putative" /protein_id="EOY11236.1" /db_xref="Phytozome:POPTR_0005s04330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T074" /translation="MVFLHQMSITDCQMLEEIIASTSDEVMDSIIFSKLGSLELDGLS SLARFCSGNYMLGFPSLKKVIMSQCPKMEIFSKGELRTPKLKGIQKTEGQYVGRWEGN LNTTIQQLFIEKSVQNSEEETKVSF" mobile_element 38492255..38497713 /note="source:CACAO_M_E44256_F18_scaffold_5 1 5459" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(38498227..38501161) /locus_tag="TCM_026477" /note="dbxref CacaoGD:Thecc1EG026477" mRNA complement(join(38498227..38499048,38499158..38501161)) /locus_tag="TCM_026477" /product="NB-ARC domain-containing disease resistance protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma08g12560.1.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026473t1" /inference="similar to AA sequence:Phytozome:POPTR_0185s00210.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.17 coverage" CDS complement(join(38498601..38499048,38499158..38500638)) /locus_tag="TCM_026477" /note="paralog of Thecc1EG026473t1" /codon_start=1 /product="NB-ARC domain-containing disease resistance protein, putative" /protein_id="EOY11237.1" /db_xref="Phytozome:POPTR_0185s00210.1" /db_xref="TAIR:AT4G27190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H475" /translation="MAKRESVQTKVDAAKSNVEEIKPDVQHWCDKVDKAINEEGKKVK DLEDKAKNKCFFDLCPNIKSQDQLSKKAEKAALIVDELIQQCQFNEVGYRGVPQAPDG APSKNFKDFDSRNEIFDRVIEALKDSTISMIGVYGTGGVGKTTLVNEVARRVQEDKLF GRVAKETVTRTPDIERIQYEIAEPLGLKLNETKSTRERARLLLQRLKEEERVLVVLDD IWASLDLEQVGIPLGDQHKGCKILLTLRNRDVLTNQMDAKKAFPIDVLEETEAWNLFK EMAENDFKDSDLRSVATEVAKKCEALPVAIVTVARALRSEELYAWKDALAQLQRPSPS NFEGIPAAVYSAIELSYNNLKSGELKQTFLLCGLLGHNARVEDLVRYGMGLHLFDNVN TVEDTRNRVLTPVSNLKAFCLLRDSYSDDRFDMHDFDLVILCQLAIASRDNHAFALKH KGVFDDWPDEEMMRKSKMISLSFDSVEKLPHELECPQLDFFQYGFRKLKKLEILNLSG SEIEMLPEETGQLTKLRLLDVCDCYELKIPAGVLSSLSKLEELYIGRSFDGWNEGSNA RLDELRDLPCLTTLNARIPDVKIVPYDLFSLFAEKLKRYMIFIGNILYWHGEIEFSRA LKLVLDTSINQLDDRVQC" mobile_element 38500976..38501105 /note="source:CACAO_Helitron_E81_scaffold_3 1948 2062" /mobile_element_type="transposon:Helitron" gene complement(38501208..38513961) /locus_tag="TCM_026478" /note="dbxref CacaoGD:Thecc1EG026478" mRNA complement(join(38501208..38501297,38505542..38506081, 38506185..38506317,38507802..38507981,38508211..38508257, 38509288..38509848,38510944..38512943,38513054..38513961)) /locus_tag="TCM_026478" /product="NB-ARC domain-containing disease resistance protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400038006" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026471t1" /inference="similar to AA sequence:Phytozome:POPTR_0185s00210.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00059t00013" mobile_element complement(38502983..38503686) /note="source:scaffold_5_CACTA_0591 15917 16626" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(38503680..38504182) /note="source:CACAO_M_S_E52027_F3_scaffold_5 1 440" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 38506929..38507439 /locus_tag="TCM_026479" /note="dbxref CacaoGD:Thecc1EG026479" mRNA 38506929..38507439 /locus_tag="TCM_026479" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01019138001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG023107t1" /inference="similar to AA sequence:Phytozome:Glyma07g34840.1" /note="quality class is strong-expresste, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.32 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc9t191" CDS 38506932..38507375 /locus_tag="TCM_026479" /note="paralog of Thecc1EG023107t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11239.1" /db_xref="Phytozome:Glyma07g34840.1" /translation="MLAVIIHTFQAESKRQVDTIKLTGFSDSDWAGSVEDSKSTAGYI FHLGNAAFSWYSGKQDVVAQSTAEAEYIAAAAATNQAIWLRKLLCDMNFNQNEATEVF VDNKSAIAIAKNPVHHGRTKHINVKYHAIREAEKEGEVSIQQCNS" CDS complement(join(38507978..38507981,38508211..38508257, 38509288..38509848,38510944..38512943,38513054..38513426)) /locus_tag="TCM_026478" /note="paralog of Thecc1EG026471t1" /codon_start=1 /product="NB-ARC domain-containing disease resistance protein, putative" /protein_id="EOY11238.1" /db_xref="Phytozome:POPTR_0185s00210.1" /db_xref="TAIR:AT4G27190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9H475" /translation="MAGCAIAIGACANVCSEAAKGIFQEIKRHMRYVFVYKKNVDKFE EKMKLLIAKRQSVQLEVVTAKRNVEEIKPHVQQWCDKVDEAINEVVKKVKDLEDKAKN KCFCDLCPNIKYRYQLSKKAEEVIEALKDSTISMIGVYGTGGVGKTTLVNEVARRVQE DKLFGWVAKATVTRTPDIKNIQYEIAEPLGLKLNETESGGERARLLLKRLKEEQQRVL VVLDDIWASLDLQQVGIPLGDQHKGCKILLTTRNGDVLTNEMDVGRIFAIDVLKEKEA WDLFKKMAGDDVENPELRSVATEVAKKCEGLPVAIVTVARALRSKELYAWKDALAQLQ RPSTSDRQSGIPAAVFSAIELSYNNLKSEELKQTFLLCGLLGHNARVQDLLRYTMGLS LFENVNTVEGTQNRVLTLVSKLKAFCLLRDSYSDDRFDMHDFDCDVALAIASRDNHAF ALKHKGVFDDWPDEERMRNFKMFSLSFDSVEKLPHELECPLLDFFRMGSKDSDVEMPA KFFEKMKNLKVLDLLKMKISSINLPTSLRALCLNQCVLGDMINLGKLKNLEIFSLFRC SSVTLPKEIGQLTKLRLLDLSNCHKLIISAGVLSSLSKLEELSIGTSFVEWDLGSNAR LAELKDLSGLTTLDVCIPDADIVLKDLFSEKLQRYNILIGFENDWFDEIEYSRILKLK VNTSIENLDDGVLRLLKKTEALYLKGPEGVKIALNNREGFLHLKHLHIDDASEIQYIM NDTDAVDRIAFQQLRSLKLESLPELIGFCSKNKSGGSTSTPQHESALFGEEMDFPCLE DLSLSGIKVERIWHNQFSIRSGCTQTLTNLSIRYCDDLKQLLSFSMANSLTHLKSFKV EGCKCLREIIFTEDIEEDMIGQIFPKLEVLLLHQLPNLTRFCHGSNCEFPLLEELIIM DCPTFETFISKATVVNEIHIIPSKWPSLKRMKIYGCDKVEIFASENLLCFGESTNQQP LFWVNEKETAQRLPLQLSSMKR" mobile_element complement(38508273..38508454) /note="source:CACAO_on_S_E46_scaffold_2 9487 9661" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(38508293..38508455) /note="source:CACAO_M_E44210_F112_scaffold_5 12749 12913" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 38513624..38513749 /note="source:CACAO_Helitron_E81_scaffold_3 1948 2087" /mobile_element_type="transposon:Helitron" mobile_element 38513759..38513959 /note="source:CACAO_Helitron_E81_scaffold_3 2022 2254" /mobile_element_type="transposon:Helitron" mobile_element 38514018..38514292 /note="source:CACAO_Helitron_E81_scaffold_3 2310 2557" /mobile_element_type="transposon:Helitron" mobile_element 38516919..38517720 /note="source:CACAO_Helitron_E81_scaffold_3 890 1683" /mobile_element_type="transposon:Helitron" mobile_element 38517791..38518188 /note="source:CACAO_Helitron_E81_scaffold_3 1691 2091" /mobile_element_type="transposon:Helitron" mobile_element 38518204..38518276 /note="source:CACAO_Helitron_E81_scaffold_3 2506 2575" /mobile_element_type="transposon:Helitron" gene complement(38519025..38537568) /locus_tag="TCM_026480" /note="dbxref CacaoGD:Thecc1EG026480" mRNA complement(join(38519025..38519189,38532473..38532525, 38536489..38537568)) /locus_tag="TCM_026480" /product="Gag-pro-like protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG045331t1" /inference="similar to AA sequence:Phytozome:Glyma06g27680.1" /note="quality class is strong-expresste, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.80 coverage" mobile_element 38519445..38519998 /note="source:CACAO_M_E57385_F197_scaffold_9 7788 8339" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(38520386..38522239) /note="source:INTACT59_F126_scaffold_9-int 658 2530" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 38522250..38522495 /note="source:INTACT117_F146_scaffold_2-int 12714 12939" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 38524722..38524994 /note="source:CACAO_Helitron_E81_scaffold_3 1233 1526" /mobile_element_type="transposon:Helitron" mobile_element 38525028..38525115 /note="source:CACAO_Helitron_E81_scaffold_3 2164 2252" /mobile_element_type="transposon:Helitron" mobile_element 38525220..38525334 /note="source:CACAO_Helitron_E81_scaffold_3 1696 1801" /mobile_element_type="transposon:Helitron" mobile_element 38526287..38526433 /note="source:CACAO_Helitron_E81_scaffold_3 2024 2216" /mobile_element_type="transposon:Helitron" mobile_element 38526578..38526806 /note="source:CACAO_Helitron_E81_scaffold_3 2310 2541" /mobile_element_type="transposon:Helitron" mobile_element complement(38527058..38527686) /note="source:CACAO_on_E459_scaffold_2 1554 2184" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 38527546..38527710 /note="source:CACAO_M_E49205_F4_scaffold_6 10106 10268" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(38529487..38530039) /note="source:INTACT52F_F339_scaffold_1-int 8675 9227" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(38532486..38532525,38536489..38537447)) /locus_tag="TCM_026480" /note="paralog of Thecc1EG045331t1" /codon_start=1 /product="Gag-pro-like protein" /protein_id="EOY11240.1" /db_xref="Phytozome:Glyma06g27680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D0E2V7" /translation="MDATELCLVPDVLIPAKFKVPEFEKYDGTKCPMAHITMYCRKMA AQSHDDKLLIHFFQDSLTGSAARWYVQLDRNRIKTWKDLARAFIAQYKHVAELAPDRL SLQTMEKKQSENFKEYAQRWRDTAAQVQPPLTDKEMTVLFINTLRAPFYERLIGNATK NFADLVLSGEIIEGAIKSGKIEGHEVASSKKGSTPKKKEGDVQAVAHDSQQAHNFNPY YPYPPYQPFYPHIGNVTQNPYVYQPVPQPTFQTNVLPQTPPPRPVASTNNPGNGQRGP RTTLEKPKFDPIPVPYTTLLPQLIENRLLARTPLEPLRPPFPKWERHRRFPCRSSS" mobile_element complement(38536267..38537742) /note="source:INTACT1330F_F382_scaffold_8-int 5227 6701" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 38537668..38556576 /locus_tag="TCM_026483" /note="dbxref CacaoGD:Thecc1EG026483" mRNA join(38537668..38537719,38552512..38552596, 38555465..38555511,38555688..38556576) /locus_tag="TCM_026483" /product="Adenosine-5'-phosphosulfate (APS) kinase 3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026470t1" /inference="similar to AA sequence:ricco:29950.m001128" /note="quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.49 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc897t10_C1" CDS join(38552518..38552596,38555465..38555511, 38555688..38555789) /locus_tag="TCM_026483" /note="dbxref ricco:29950.m001128; paralog of Thecc1EG026470t1" /codon_start=1 /product="Adenosine-5'-phosphosulfate (APS) kinase 3" /protein_id="EOY11241.1" /db_xref="TAIR:AT3G03900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6ZL22" /translation="MNMPLELCEARDSKGLYKLARAGKIKGFTGIDDPYEPPLNCEIE IQQKDGDCPTPGAMAGEVVSYLEEKGYLRDH" mobile_element 38552989..38553231 /note="source:INTACT1330F_F382_scaffold_8-int 12737 12961" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(38556578..38577058) /locus_tag="TCM_026484" /note="dbxref CacaoGD:Thecc1EG026484" mRNA complement(join(38556578..38556893,38557045..38557103, 38561311..38561425,38562500..38562862,38563932..38564492, 38565256..38565750,38566584..38569025,38576831..38577058)) /locus_tag="TCM_026484" /product="NB-ARC domain-containing disease resistance protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400033189" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026473t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s04360.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.38 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00228t00002_G2" CDS complement(join(38556825..38556893,38557045..38557103, 38561311..38561425,38562500..38562862,38563932..38564492, 38565256..38565750,38566584..38568944)) /locus_tag="TCM_026484" /note="paralog of Thecc1EG026473t1" /codon_start=1 /product="NB-ARC domain-containing disease resistance protein, putative" /protein_id="EOY11242.1" /db_xref="Phytozome:POPTR_0005s04360.1" /db_xref="TAIR:AT4G27190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NCG3" /translation="METVLTGAAAKVASEAAKGIFAEIKRHMRYVIIYKKNVDKFEEK LKMLMAKRTNVQQEVDAADRNGEKIKEDVELWRNTVDKVINEEGKKVKDLEDKAKNKC LIGLCPNIKSRYQLSKKAEEVVAAVDDLIQQYCQFNGVAYRDVLEAPKCAPPKNFEAF DSRKEVFDGVIEALKDSTIGVIGVCGTGGVGKTTLVNQVTGQVQEDKLFDRVVKATVT QTPNIQKIQDEIADFLRLSLEGTSIPVRALSLSVRLKKEKKILVVLDDIWARLDLEQV GIPSGDQQEGCKILLTSRNQIVLTNEMDAKKTFVMDVLEEKEAWELFKKMAENDFENR DPFRSVATEVAKKCEGLPVAIVTVATALRNQPIYAWNDANLQLQRPSPSNFTGIPHAV YSAIQISYNNLESEELRQTFLLCGLLGHNARTEDLVRYGLGLRSFGNVNKVEDTRNRV LTLVRKLKAFCLLRDSYSDDRFDMHDFDCDVALAIASRDNHAFALKHKGFFDDWPDEE RMRNFKMISLSFDSVEKLPHELECPQLTFFSMGSKDSDVEMPANFFEKMKNLKVLDLL KMKIFSINLPTSLRTLCLSQCVLGDMVNLGKLKNLEILRLFGVSGVMLPKEIVQLTKL RLLDLSNCDELIILAGVLSSLSKLEELYIGTSFVKWDLGSNARVAELKDLSGLTALDV CIPNAGIVLKDLFSEKLRRYKIVIGSETDWYERIEYSRILKLKVGTSIDNLGDGVLRL LKETEALYLKGPEGVKIALNNRGGFLHLKHLHIEDDPKRQSALFDEEVGNPHLRLSDD TSELMEIRRRNPQEILPFKHIEVLEVDDCSTWRCLFTLSMALGLPQLRVLSVKNCIVM EHIIIEEGSDEQVANETVFPLLRSITLESCADLASFYQGSKSLECPSLEKVDVCDCPK MFTFASTFSKEQRIEIIDAGNTTKLSKRIADTAFFDNMMDFPCLADLSLGGINFERIW HNQFSIRSDYTQNLTTLYIWGCDNFKHLLSFSMVKSLTHLKRFEVKECKCLREIIFTE DIEDNMMDQIFPKLEHLQLEGLPELTRFYHGSHCEFPLLKEFIIWNCPTFETFISKSI LVSEIHIIPSKWPSLKRMKVYRCDKVEIFASENLLSFGESTNQQPLFWVNEVTFPNLE ELTLEGNGIMKEIWHGQLRAECDEGKRCIVFTRLKYLKLSSLPTLASFCLGDQIFEFP ALENMIVTACPKMKIFCQGDLSTPQLQKVISKDEGEEKGWWEGDLKTTIKWMFEEKIA YCDVRLSDTSELMKIWSRNPQEILTFKYLEKLEVDDFVQVGIRQVIVVLVRHYFQRVE LLYSSMMILLGWQPYSLESK" mobile_element 38569147..38569283 /note="source:CACAO_Helitron_E81_scaffold_3 1948 2087" /mobile_element_type="transposon:Helitron" mobile_element 38569279..38569824 /note="source:CACAO_Helitron_E81_scaffold_3 2007 2556" /mobile_element_type="transposon:Helitron" mobile_element 38571077..38571602 /note="source:CACAO_M_E57385_F197_scaffold_9 7788 8339" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 38572194..38574320 /note="source:INTACT52F_F339_scaffold_1-int 27 2272" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(38574324..38574416) /note="source:CACAO_Mutator_E714_scaffold_3 1721 1816" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(38576121..38576558) /note="source:INTACT135F_F90_scaffold_2-int 13535 13998" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 38576385..38576655 /note="source:CACAO_Helitron_E81_scaffold_3 1235 1526" /mobile_element_type="transposon:Helitron" mobile_element 38576689..38576776 /note="source:CACAO_Helitron_E81_scaffold_3 2164 2252" /mobile_element_type="transposon:Helitron" mobile_element 38576881..38576995 /note="source:CACAO_Helitron_E81_scaffold_3 1696 1801" /mobile_element_type="transposon:Helitron" gene complement(38576898..38586531) /locus_tag="TCM_026487" /note="dbxref CacaoGD:Thecc1EG026487" mRNA complement(join(38576898..38577001,38581147..38581288, 38581510..38582270,38582476..38582716,38584925..38585607, 38585734..38586531)) /locus_tag="TCM_026487" /product="Uncharacterized protein" /inference="similar to AA sequence:Phytozome:POPTR_0005s04360.1" /note="quality class is weak, express is weak, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.19 coverage; weak similarity to LRR and NB-ARC domains-containing disease resistance protein" mobile_element 38577804..38578266 /note="source:CACAO_Helitron_E81_scaffold_3 2024 2541" /mobile_element_type="transposon:Helitron" mobile_element 38580251..38580432 /note="source:CACAO_Helitron_E81_scaffold_3 2379 2560" /mobile_element_type="transposon:Helitron" CDS complement(join(38581867..38582270,38582476..38582716, 38584925..38585607,38585734..38586247)) /locus_tag="TCM_026487" /note="weak similarity to LRR and NB-ARC domains-containing disease resistance protein" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11243.1" /db_xref="Phytozome:POPTR_0005s04360.1" /db_xref="TAIR:AT1G12280.1" /translation="METVSVVSISIASNLVDSTVGQIKNQIGYVFNYERKVRQLQDQV EKLRYAKQRVQHSVDAAKRKGKEIETVVDHWLACVEHLVQEVDTLTDEELKQKKCFIG LCPNVKSRYRLGKKATKEAFAVDELLIMGKFDRVSYSTAPQEIMIAPTRDFETFKSRV NVFKKIMEELKGHTPDMFKIHGVIADFFDLRFEERTMVGKALRLRDRLKKVKRILIVL DDIWSRLYLEDVGIPFEDEHRGCKILLTSRNGNVLKDMHDQESFIGLLSGEEAWNLFK KIAGEGVETAELRSIAIKIANACAGLPIAIATVGRALRNKSLFEWIEALHRLRRPSSP DLPVYSTIELSFKFLHSEELRLTFLICSQMSHEALVLDLMQCTIGLGLFLDRHSIKET RDAVLARDTFPSFEELWLEQNAFMKKIWLGQLPAVQYFPRLKVLKLIRLPKQSTILSS CFFWSFSYIPKLIVSDASFTEIFQWEDLDVSKCHGLINLISSSTTNSMEQLEIMSIID CKVIEEIIAVEYDDGKDDIAFSKLKYLGLQSLPSLTSFYSGNDTFNLPSLDELIVREC STLENFSTGELIALMLQRVHLTEEEDSGYSVQNLNATIEDMHKKKAC" gene 38586626..38609065 /locus_tag="TCM_026488" /note="dbxref CacaoGD:Thecc1EG026488" mRNA join(38586626..38586935,38596067..38596215, 38605139..38605288,38606991..38607128,38607190..38607260, 38607857..38607914,38608038..38608084,38608261..38608343, 38608992..38609065) /locus_tag="TCM_026488" /product="Adenosine-5'-phosphosulfate (APS) kinase 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033406001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026470t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s05450.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11312t1" CDS join(38596092..38596215,38605139..38605288, 38606991..38607128,38607190..38607260,38607857..38607914, 38608038..38608084,38608261..38608343,38608992..38609031) /locus_tag="TCM_026488" /note="paralog of Thecc1EG026470t1" /codon_start=1 /product="Adenosine-5'-phosphosulfate (APS) kinase 3" /protein_id="EOY11244.1" /db_xref="Phytozome:POPTR_0013s05450.1" /db_xref="TAIR:AT3G03900.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6ZL22" /translation="MSTMGNSTNIFWQESPIGKLERQKLLNQKGCVVWITGLSGSGKS TLACSLSRELYTRGKLSYILDGDNLRHGLNKDLGFKADDRTENIRRVGEVAKLFADTG LICIASLISPYRKDRDACRAMLPDANFIEARLLEDGLHEHVRQEIQKAFTSLHVLERL KIFSPYLDLISLHSRSYIQPGFTGIDDPYEPPLNCEIEIQQKDGDCPTPGAMAGEVVS YLEEKGWDVYQQASGSNM" mobile_element complement(38607635..38607704) /note="source:CACAO_on_E59_A_scaffold_8 4762 4833" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(38609064..38623888) /locus_tag="TCM_026489" /note="dbxref CacaoGD:Thecc1EG026489" mRNA complement(join(38609064..38609382,38609492..38609592, 38610001..38610834,38611813..38612253,38613941..38614327, 38615407..38615967,38616741..38617232,38618058..38618432, 38619324..38619884,38620901..38623888)) /locus_tag="TCM_026489" /product="NB-ARC domain-containing disease resistance protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400020244.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026471t1" /inference="similar to AA sequence:Phytozome:POPTR_0185s00200.1" /note="quality class is strong, express is medium, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00059t00019" CDS complement(join(38609551..38609592,38610001..38610834, 38611813..38612253,38613941..38614327,38615407..38615967, 38616741..38617232,38618058..38618432,38619324..38619884, 38620901..38623384)) /locus_tag="TCM_026489" /note="paralog of Thecc1EG026471t1" /codon_start=1 /product="NB-ARC domain-containing disease resistance protein, putative" /protein_id="EOY11245.1" /db_xref="Phytozome:POPTR_0185s00200.1" /db_xref="TAIR:AT4G27190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HVH2" /translation="MEAVVTGAAANVTSEGAKRIFQEIKRVFVYKKNVGEFEEKLKTL TAKRESVQKEVDAAKSNVEEIKPDVQHWCDKVDKAINEQEKKVKDVEDKAKNKCFFDL CPNIKSRYQLSKKAEEAAAVVDELSQQGGFDRVGYRNVSEVPEAPKNFRAFDSRKEIF DRVIEALKDSTISMIGVYGTGGVGKTTLVNEVARRVQKDKLFGSVATATVTQTPEIER IQYQVAERLRLNLNGTKSREERARLSSERLTKEERVLVVLDDIWACLDLQQVGIPLGD QHKGCKILLTTRNRDVLTNEMDVGRIFAIDVLKEKEAWDLFKKMAGDDVENPELRSVA TEVAKKCEGLPVAIVTVARALRSKELYAWKDALAQLQRPSTSDRQSGIPAAVFSAIEL SYNNLKSEELKQTFLLCGLLGHNARVQDLLRYTMGLSLFENVNTVEGTQNRVLTLVSK LKAFCLLRDSYSDDRFDMHDFDCDVALAIASRDNHAFALKHKGVFDDWPDEERMRNFK MFSLSFDSVEKLPHELECPQLTFFSMGSKDSDVEMPAKFFEKMKNLKVLDLLKMKFSS INLPTSLRALCLNQCVLGDMINLGKLKNLEIFSLFGCSGVMLPQEIGQLTKLRLLDLS DCHKLIIPAGVLSSLSKLEELYIGTSFVEWDLGSNARLAELKDLSGLTTLNVCIPDAD IVLKDLFSEKLRRYNIVIGSETDWYERIEYSRILKLKVGTSIDNLGDGVLRLLKETEA LYLKGPKGVKIALNNREGFLHLKHLHIEDAWEIQYIMNDTDPVDRIAFQQLRSLKLES LPELIGFCSKNKSGGSTSTPQHESALFGEEMDFPCLEDLSLQFINVERIWHNQFSIRS GCTQTLTNLSIWYCDNFKHLLSFSMAKSLTHLKSFNVEGCKCLREIIFTEDIEEDMIG QIFPKLEVLQLHQLPNLTRFCHGSNCEFPSLEELIIMNCPTFETFISKVTVVSEIHII PSKWPSLKRMKVHRCDKVEIFASENLLSFGESTNQQPLFWVNEVTFPNLEELTLSGND IMKEIWHGQLRAECDEGKRCIVFTRLKYLKLSCLPTLASFCLGDQIFEFPALENMIVT ACPKMKIFCRGDLSTPQLRKVISKEKGWRVKKEEGWWEVDLKTTVKWMFENKIAYCDV RLSDTSELMKIWSRNPQEILTFKYLENLEVDDCSTLRFLFTLSMVLGLPQLRKLIVKN CIVMEHIITEEESDEQVANETVFPLLRSITLEYCENLASFYQGSKSLEYPSLEKVVVS DCPKMFTFASAFSREQRIEIIDEGNTTRLSKGIADIVFLDNTMDFPCLADLSLWGINV ERIWSNQFSIRSDYTQTLTNLRIGYCDNLKHLLSSSMAKSLTHLKSFIVMRCKCLREI IFTEDIKDNMMDQIFPKLEHLQLEGLPELTRFCHGSHCEFPLLKELIIGNCPTFETFI SKSTLVNEIHFIPSKWPSLERMRVYGCDKVEIFASENLLSFRESTNQQPLFWVNEVTF PNLEELTLEGNGIMKEIWHGQLRAECDEGKQCIVFTRLKSLKLSCLPALASFCLGDQI FEFPALENMIVTACPKMKIFCQGDLSTPQLQKVISKEDEDEDDEDEGEEKRWWEGDLK TTIKWMFEEKIGYSNLRLSDTSELMKIWSGNPQEILPFKYLEFLEVHDCSSLRWLFTH PTALSLPRLRTLKVKNCIVMEHIIKEEGPDEQVASFYQGNKILEFPSLEDLEVVGCPQ MFAFASAFSRELRIETIDDIDGGNTTWVSKGIVDTAFFDNTVAFPRLDFLRIEGLGQL RKIWDDKVAMNSFCKLRYFTVKDCERLSNIFPFNMMERLQELYELEIVNCDSLEEIIG PQGLNSNESHAVTATELKLSELPELTHLSKEEIPLGEVVFNNLEYLEVSRCGKLKNLV PSSTSFENLETLKVSECHGLMNLVALPVAKSMVLLREMRITDCQMLEATIASTSDEVM DGIIFSDLRTLELGGLPSVSRFCSGNYTLGFRSLEKVIMRQCPKMEIFSKGELSTPKL HGIRLTEGEYVGLWEGNLNATIQQLFKKKNVQNCEEETKVSL" mobile_element 38623593..38623719 /note="source:CACAO_Helitron_E81_scaffold_3 1948 2076" /mobile_element_type="transposon:Helitron" gene 38625616..38627396 /locus_tag="TCM_026490" /note="dbxref CacaoGD:Thecc1EG026490" mRNA join(38625616..38625912,38626280..38627396) /locus_tag="TCM_026490" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.66 coverage" mobile_element complement(38625677..38625732) /note="source:scaffold_5_CACTA_0582 1290 1345" /mobile_element_type="transposon:TIR/CACTA" CDS 38626675..38626914 /locus_tag="TCM_026490" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11246.1" /translation="MISKRTYFHLNDWNVKKVKDFMMSIWNIYNPFWVIETGESWLMD LASNSTCNGKGHLHYNTTKQLCRDEGYRVLRIILM" mobile_element 38627487..38627644 /note="source:scaffold_6_CACTA_0699 15064 15222" /mobile_element_type="transposon:TIR/CACTA" mobile_element 38627802..38633193 /note="source:CACAO_M_E44258_F10_scaffold_5 1 5392" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(38633194..38633229) /note="source:INTACT76_F135_scaffold_2-int 664 697" /mobile_element_type="retrotransposon:LTR/Copia" gene 38633306..38635592 /locus_tag="TCM_026492" /note="dbxref CacaoGD:Thecc1EG026492" mRNA join(38633306..38634043,38634489..38635592) /locus_tag="TCM_026492" /product="Disease resistance RPM1-like protein" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.27 coverage" CDS join(38633578..38634043,38634489..38635459) /locus_tag="TCM_026492" /codon_start=1 /product="Disease resistance RPM1-like protein" /protein_id="EOY11247.1" /db_xref="TAIR:AT5G35450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RGE3" /translation="MPSLLDTMHEKNEVIMVNQLGSSTGKENSIEDQPSYLVQEAPSD DKKKLTEYTTNMEDQLTSQNQSALLPTEQKEQSKVVTDNATSSEDQSTSFDELTSPDE ISFSNTLAVTYKHLSYPSKCCLLYLGLFPRLYDIPIRRLLQLWIAEGLVTQPTGNLRQ LKYLGLRWTLLDSVPESVGGLPHLQTLDIKQTYVVTLPSTIWEAKKLRHLHMSEIYFD VKKSTRGSLKSLQTLWGLIIRRQLRETDWLVNLTGLRKLKLTCLEASMEHIADWLTKL SNLQSLKLRSISDSNEPARLAIKAMRNLTNLSRLYLLGLGELSNTFKVSDLPENLEVL TLSVSHLSEDPMEALGELEKLTVLKLYAHSFKGQNMTCHTDKFPQLQVLRLWMLEELQ SWIVENKAMPILKEIEIRCCKNLEKVDGLENLTSLKELTLRNMKPSFIEYAREKVGDK VDIIAKDWKFPPPWVSSSRLSTCYKVLS" gene complement(38636483..38640531) /locus_tag="TCM_026493" /note="dbxref CacaoGD:Thecc1EG026493" mRNA complement(join(38636483..38637048,38637237..38637362, 38637683..38637735,38637823..38637914,38638382..38638434, 38638557..38638629,38638710..38638877,38638973..38639067, 38639867..38640531)) /locus_tag="TCM_026493" /product="DHHC-type zinc finger family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01022009001" /inference="similar to AA sequence:Phytozome:POPTR_0369s00220.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:PASA:2:TSA:puevd3b025622t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11104t5" mRNA complement(join(38636505..38637048,38637237..38637362, 38637683..38637735,38637823..38637914,38638382..38638434, 38638557..38638629,38638710..38638877,38638973..38639067, 38639867..38639960,38640043..38640531)) /locus_tag="TCM_026493" /product="DHHC-type zinc finger family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01022009001" /inference="similar to AA sequence:Phytozome:POPTR_0369s00220.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11104t5" CDS complement(join(38636770..38637048,38637237..38637362, 38637683..38637735,38637823..38637914,38638382..38638434, 38638557..38638629,38638710..38638877,38638973..38639067, 38639867..38639960,38640043..38640191)) /locus_tag="TCM_026493" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="DHHC-type zinc finger family protein isoform 1" /protein_id="EOY11248.1" /db_xref="Phytozome:POPTR_0369s00220.1" /db_xref="TAIR:AT3G04970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q3EBC2" /translation="MAVHWALVCHGLLTLTVVVAFLCGQWPIFQGTPISSIHRFITFG AYQYFLKFMGAVFGDKGTNLILSVEYYCCDRPNPVLQIIYLAIIGATYYIIAKTSFSY IPGYYLSGVHRYTSLLAVGIGILLFLLTSFSDPGTVKAENVSQYLSAYPYDNIIYTEK ECSTCKLPKPARSKHCSICNRCVARFDHHCGWMNNCIGERNTRYFLAFLLWHFLLCMY GTIAIGLVLAGRLKELRVVYILTVYYGVDNSFGSLAPHIVQWLLGSYNSQILLMVFMA IVSLLLAGFFAYHANLCLTNTTTNETFKWQDYISWQKKLSEARASTAALKASITGMKS EGKPPESKCKSFFRRSPLEDTEAVVRNNVYDKGFFHNIYEVIFPVSTRASLLWTKSKS G" CDS complement(join(38636770..38637048,38637237..38637362, 38637683..38637735,38637823..38637914,38638382..38638434, 38638557..38638629,38638710..38638877,38638973..38639067, 38639867..38639953)) /locus_tag="TCM_026493" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="DHHC-type zinc finger family protein isoform 2" /protein_id="EOY11249.1" /db_xref="Phytozome:POPTR_0369s00220.1" /db_xref="TAIR:AT3G04970.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q3EBC2" /translation="MGAVFGDKGTNLILSVEYYCCDRPNPVLQIIYLAIIGATYYIIA KTSFSYIPGYYLSGVHRYTSLLAVGIGILLFLLTSFSDPGTVKAENVSQYLSAYPYDN IIYTEKECSTCKLPKPARSKHCSICNRCVARFDHHCGWMNNCIGERNTRYFLAFLLWH FLLCMYGTIAIGLVLAGRLKELRVVYILTVYYGVDNSFGSLAPHIVQWLLGSYNSQIL LMVFMAIVSLLLAGFFAYHANLCLTNTTTNETFKWQDYISWQKKLSEARASTAALKAS ITGMKSEGKPPESKCKSFFRRSPLEDTEAVVRNNVYDKGFFHNIYEVIFPVSTRASLL WTKSKSG" gene complement(38639361..38644384) /locus_tag="TCM_026494" /note="dbxref CacaoGD:Thecc1EG026494" mRNA complement(join(38639361..38639418,38641076..38641708, 38641804..38641899,38642012..38642038,38642616..38642762, 38642931..38643017,38643237..38643455,38643758..38644384)) /locus_tag="TCM_026494" /product="A_TM021B04.11 protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s03000.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s03000.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.66 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11128t2" CDS complement(join(38641508..38641708,38641804..38641899, 38642012..38642038,38642616..38642762,38642931..38643017, 38643237..38643455,38643758..38643979)) /locus_tag="TCM_026494" /codon_start=1 /product="A_TM021B04.11 protein" /protein_id="EOY11250.1" /db_xref="Phytozome:POPTR_0013s03000.1" /db_xref="TAIR:AT5G27290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04645" /translation="MGTLAYYCNLSSCPSLRLSTFRIVGSSEIGVSRRQVLEQVDKEL NKGDERAALTLVRDLQGKPGGLRCFGAARQVPQRLYTLDELRLNGIETTSLLSPVDAT LGSIERNLQLAAILGGVAAWNAFGFSPQQILFISLGFLFLWTLDSVSFNGGVGSSVLD TIGHTFSQKYHNRVIQHEAGHFLIAYLVGILPRGYTLTSLEALKKEGSLNIQAGTAFV DFEFLEEANAGKVSATTLNRFSCIALAGVATEYLLYGYAEGGLADINKLDALLKGLGF TQKKADSQVRWSVLNTILLLRRHEAARGQLAEAMSLGKSVGSCIDIIEDNINDDDI" mobile_element 38644370..38644410 /note="source:CACAO_on_SS_E42_scaffold_2 8452 8492" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(38644379..38644423) /note="source:CACAO_M_E22186_F143_scaffold_3 9951 9995" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 38647357..38651368 /locus_tag="TCM_026495" /note="dbxref CacaoGD:Thecc1EG026495" mRNA join(38647357..38648349,38648518..38650333, 38651006..38651368) /locus_tag="TCM_026495" /product="NB-ARC domain-containing disease resistance protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s04430.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026502t1" /inference="similar to AA sequence:ricco:29838.m001666" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.12 coverage" CDS join(38647926..38648349,38648518..38650333, 38651006..38651321) /locus_tag="TCM_026495" /note="dbxref ricco:29838.m001666; paralog of Thecc1EG026502t1" /codon_start=1 /product="NB-ARC domain-containing disease resistance protein, putative" /protein_id="EOY11251.1" /db_xref="TAIR:AT4G27190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9S9G0" /translation="MLIAKRTSVQQEVDAADRNGEKIKADIQHWSKRVDKVINEEEKK VKDLQDKAKNKCFVGLCPNIKSRYQLSRKAEEGVAAVDDLIQQCQFNGVGYRDVPEAI LDASPKDFETFKLREKVFNDIVGAVKDATISIIGVYGLAGRARRLCERLKKEKKILVV LDDIWKRLDLDEVGIPFGNQHKGCKILLTSRDQNVLSSGMDAENTILIGDLDDGEAWD WFRKMAGDSVESVELRSTAIEVANRCARLPLAIATVARALRNKSLFAWKDALRQLQRP SSKNFIGISADIYSAIELSYNHVESEELKQAFLLCSLLRRDTRIDDLLKYAIGLGLIN GVNSVEEARNRLLTMMSDLKASCLLLDSNTNDQYFDMHDLVCDVAMSIAFKDNHVFTL NEEDVLKDWLVAETMKKFNMIRLQYPSIGELPDELNCPQLVLFLMFNKDTSLKIPPNF FRKTTDLKVLDFTNMHFSSLPSSIRLLTSLHTLCLDQCELRDITIIGKLKNLEILSLL KSDIRILPKEIGLLVKLKLLDLSHCTKLKIIPPSVLSNLSKLEELYMGGTFIQWQVGG HANQRSNASLAELKTLSCLTTLEVHIPDAEAILGGLLFKDLQKLGRYKIFIGKEWGWL GKYEYSRTLKLKLSTSIDHLDHGLKLLLRKTEALYLDELKGVKIAMQEFKDEESLLHL KNLHIQNSLGMKYIINDNGAVNKNEFFQLRSLTLQIYHSSLAFALKTKVAQPPGLNMS YLFSVKRLIACLQMLFPCLENLLLSSINVERIWHIQLSNTSFHNHENLIVKAFVNLKY LEVYDCNNLKYLFTVSMALDLLQLKEIKVKNCPTMEQIITTEEAEEAAMNSMD" gene 38651415..38652888 /locus_tag="TCM_026496" /note="dbxref CacaoGD:Thecc1EG026496" mRNA join(38651415..38651777,38652026..38652090, 38652267..38652392,38652534..38652888) /locus_tag="TCM_026496" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is ortholog weak, intron is weak, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc6034t2" CDS join(38651552..38651777,38652026..38652090, 38652267..38652392,38652534..38652605) /locus_tag="TCM_026496" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11252.1" /translation="MTDKRMNCIDRVHFDSPVAVIRPPPHSDLSKQRHEALQRVDREL SKCNFRTALSLYPQTPSTPTQWPPRLQNRQTDLSNESNDCSYFYEDYRLLCLHDEAGH SPIGYLLGVLPKCYRTSSIEELHDDRFTAGSVDESLQASVRSISNRVTNSLFLQFLTS FA" gene 38652935..38658580 /locus_tag="TCM_026497" /note="dbxref CacaoGD:Thecc1EG026497" mRNA join(38652935..38653137,38653292..38653361, 38653436..38653643,38658208..38658580) /locus_tag="TCM_026497" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.49 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11120t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc6166t1" CDS join(38653345..38653361,38653436..38653640) /locus_tag="TCM_026497" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11253.1" /translation="MLMLTRKQLDKVLRWLGYTESQADDQVRWDAPNTVSILDRHDET GSRLVQSMAVGDQCQCINTIEEAVVGKEI" mobile_element 38659894..38662875 /note="source:CACAO_M_E10551_F245_scaffold_2 1 2991" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 38662548..38683989 /locus_tag="TCM_026500" /note="dbxref CacaoGD:Thecc1EG026500" mRNA join(38662548..38662595,38672275..38675316, 38676064..38676513,38676633..38677373,38677877..38678707, 38678875..38679333,38679600..38680103,38680655..38681501, 38683213..38683277,38683359..38683989) /locus_tag="TCM_026500" /product="NB-ARC domain-containing disease resistance protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01026731001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026502t1" /inference="similar to AA sequence:Phytozome:POPTR_0185s00200.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is medium, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.52 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11640t1" mRNA join(38662548..38662595,38672275..38675316, 38676064..38676513,38676633..38677373,38677877..38678707, 38678875..38679333,38679597..38680103,38680655..38681497, 38683213..38683664) /locus_tag="TCM_026500" /product="NB-ARC domain-containing disease resistance protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01026731001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026502t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s04360.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is medium, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:PASA:2:TSA:puevd3b025629t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11640t1" mobile_element 38664719..38665062 /note="source:CACAO_Again_on_S_E25_scaffold_1 1 351" /mobile_element_type="transposon:TIR/hAT" mobile_element 38665051..38665517 /note="source:CACAO_Again_on_S_E25_scaffold_1 3310 3786" /mobile_element_type="transposon:TIR/hAT" CDS join(38672761..38675316,38676064..38676513, 38676633..38677373,38677877..38678707,38678875..38679333, 38679600..38680103,38680655..38681501,38683213..38683277, 38683359..38683433) /locus_tag="TCM_026500" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG026502t1" /codon_start=1 /product="NB-ARC domain-containing disease resistance protein, putative isoform 1" /protein_id="EOY11254.1" /db_xref="Phytozome:POPTR_0185s00200.1" /db_xref="TAIR:AT4G27190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AWL3" /translation="MEDVGTGAAANISSQIAKGIFQEIKRHIKYVIIYKKNVDKFDHK LQMLKAERTSVQQEVGAADRNGEKIKADVQHWNKTVDKVIDEEVRKVKDLQDKAKNKC FIGMCPNIKSRYQLSRKAEEVVVTVDDLIQRKGQFNGVGYRDVPEVILDASPKEFETF KSREKVFNDIMEAVKDAAVSMIGVHGMAGVGKTSLVNEVARQVQEVKLFDSVVTVNVT QTPDIQKIQDQIAELLGLRLEDKSTVVRARRLCERLKKEKQVLVVLDNVWKKLDLEEV GIPFENQHKGCKILLTSRDQNVFSNEMDVKETFPIDVLDDEEAWDLFKQRAGDNVESV ELRSTAIEVAKRCARLPLAIATVARALRNKSLFAWKDALRQLQRPSPNNFNGIAAAAY SAIELSYNHLESDELKQAFLLCTLLRRDSSIDYLLQCAIGLGLINGVSTVEEARNRLL TIVSNLKASCLLLDSNLNDRSFDMHDLVYDVVMSIASKDNHVFALNEKDVLKDWPDGE IMKKWNKIYLKYPSIIGELPDELNCPEVVLFILLSKDLSLKMPPNFFNETKNLKVLDL SDMQFSSLPLSTCLFASLRALFLNQCELRDITIIGELKNLEILNLSYSDIKILPKEIG RLVKLKRLDLGHCTKLKIILPGVLSSLSKLEELYMGGTFIQWEVGGHANQRGNIASLA ELNTLSCLTTLEVHIPDPEAMSGGLLFKDLQKLERYKIFIGKEWEWFGEYEYSRTLKL KLSTSIDHLGHEFKLLLKRIEGLYLDELEGVKIAMQEFIDEESLPYLKNLHIQNGSMI QYIINDDGAANKNEFLQLQSLTLQNLPQLISFCSEDENGSTSRVQHELPLFSEKSLFT RLENLRLSSISVERIWHDSFCNHENLTRLIIEGCGNLKRLLSFSMSRKLVHLKCFEII GCKCLREIIFAEDIEEESKDKILFPQLNSLKLQDLQHLIGFWLGHQNIEFPSLKSLKI EKCPELKGFIYESTMEGSQSVSSQVLFDEKVAFPSLEELFISKLRNMKMIWQNPLAVN SFHKLQEMEVEECDQLLTIFPSNMLRAFQGLQTLKVQKCVSVEEVFEVGRSNMEETGA VTTQLRQLYIWYLPNLKNIWKNDPKGIFTFENLRVISVWDCCSLKNVFPASVAKVLPQ LRDLLIADCRVEEIVSKEEGLETVVTFVFDQVCYLFLWRLPDLKCFYPGAHTTKWPML KKLKVSGCDKMKILGTERLSISDTAKVDGQLESTLIQPPLLLAEKVIPKLEKLSLNSD DIAMISESQFSRSLFREIKILRVSNSGDESVVFPITFLERFDNLEKLVVIYYEFKELF CNERDSGMETYAGTLPTIRSLKLIRLHNLKHLWKQDVQVDRILPNLETLKVHLCDKLI SLGSSSASFQNLLTLDVWSCGAMICLVTSLAVQSLAQLKKLRIRECIFMKEIVGNVGD EATYDIVFSKLKSLELCDLPQIESFCSSNHTFGFPSLEEVIVSRCPQLEIFCKGVLNA PMLQRVQVTDKDGKGYWGGDLNSTVQQLYAEKVGYKGVEYVVLSEFSKSIEIWKDNLQ GVLDFVNLKHLEVCDCNNLKYILTVSMALDLQQLRVIKVNNCPMMEHIITNEEAEEAA MNSIVLPRLQQITLESCSNLRSFCLGSIIMECPSLQLIHVDDCPEMFAMASTFAAEKD AETVAAFFNDKVAFPQLEKLTLKGMTNCRKIWPDQLVGDSFCKLNDLWVLECNRLLNI FPLSMRARLQNLEDFRIRGCDSLEEIFEHEALNTNDLHSVTATQSIAEETTTNFVFPT LTYLKLYMLPRLRSFCSMVHTTEWPSLKKMWIYGCHKMEIFASENIRSFGESTNQQPL FWVNEVTFPNLEELKLEWNDIMKEIWHGQLRANFFYKLKVLELIHFPDKSAVFPHCFI QSLPNLEKLVVSEASFSHIFHFEGFDGEKNRASAITSLNELVLSELPELTHLWKEEYH PIAAFCELRTLQVRDCGKLKILAPSAVSFENLTTLEVSRCHGYVNLIACSTAKSLVQL TRMTITDCEMIEKIIACESEEVKGDIVFTELKYLQLSCLPNMASFCLGDHNLEFPILE KMIVRECPKMKIFCQGDLSTPQLQKVILTEDGDEENGQWEGDLKTTIKRMFEEEVRSL VAEHLQFGCIEGLHDDVDKLDKVLSWLGYTAIKLDGLHRIPLQ" CDS join(38672761..38675316,38676064..38676513, 38676633..38677373,38677877..38678707,38678875..38679333, 38679597..38680103,38680655..38681497,38683213..38683221) /locus_tag="TCM_026500" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG026502t1" /codon_start=1 /product="NB-ARC domain-containing disease resistance protein, putative isoform 2" /protein_id="EOY11255.1" /db_xref="Phytozome:POPTR_0005s04360.1" /db_xref="TAIR:AT4G27190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AWL3" /translation="MEDVGTGAAANISSQIAKGIFQEIKRHIKYVIIYKKNVDKFDHK LQMLKAERTSVQQEVGAADRNGEKIKADVQHWNKTVDKVIDEEVRKVKDLQDKAKNKC FIGMCPNIKSRYQLSRKAEEVVVTVDDLIQRKGQFNGVGYRDVPEVILDASPKEFETF KSREKVFNDIMEAVKDAAVSMIGVHGMAGVGKTSLVNEVARQVQEVKLFDSVVTVNVT QTPDIQKIQDQIAELLGLRLEDKSTVVRARRLCERLKKEKQVLVVLDNVWKKLDLEEV GIPFENQHKGCKILLTSRDQNVFSNEMDVKETFPIDVLDDEEAWDLFKQRAGDNVESV ELRSTAIEVAKRCARLPLAIATVARALRNKSLFAWKDALRQLQRPSPNNFNGIAAAAY SAIELSYNHLESDELKQAFLLCTLLRRDSSIDYLLQCAIGLGLINGVSTVEEARNRLL TIVSNLKASCLLLDSNLNDRSFDMHDLVYDVVMSIASKDNHVFALNEKDVLKDWPDGE IMKKWNKIYLKYPSIIGELPDELNCPEVVLFILLSKDLSLKMPPNFFNETKNLKVLDL SDMQFSSLPLSTCLFASLRALFLNQCELRDITIIGELKNLEILNLSYSDIKILPKEIG RLVKLKRLDLGHCTKLKIILPGVLSSLSKLEELYMGGTFIQWEVGGHANQRGNIASLA ELNTLSCLTTLEVHIPDPEAMSGGLLFKDLQKLERYKIFIGKEWEWFGEYEYSRTLKL KLSTSIDHLGHEFKLLLKRIEGLYLDELEGVKIAMQEFIDEESLPYLKNLHIQNGSMI QYIINDDGAANKNEFLQLQSLTLQNLPQLISFCSEDENGSTSRVQHELPLFSEKSLFT RLENLRLSSISVERIWHDSFCNHENLTRLIIEGCGNLKRLLSFSMSRKLVHLKCFEII GCKCLREIIFAEDIEEESKDKILFPQLNSLKLQDLQHLIGFWLGHQNIEFPSLKSLKI EKCPELKGFIYESTMEGSQSVSSQVLFDEKVAFPSLEELFISKLRNMKMIWQNPLAVN SFHKLQEMEVEECDQLLTIFPSNMLRAFQGLQTLKVQKCVSVEEVFEVGRSNMEETGA VTTQLRQLYIWYLPNLKNIWKNDPKGIFTFENLRVISVWDCCSLKNVFPASVAKVLPQ LRDLLIADCRVEEIVSKEEGLETVVTFVFDQVCYLFLWRLPDLKCFYPGAHTTKWPML KKLKVSGCDKMKILGTERLSISDTAKVDGQLESTLIQPPLLLAEKVIPKLEKLSLNSD DIAMISESQFSRSLFREIKILRVSNSGDESVVFPITFLERFDNLEKLVVIYYEFKELF CNERDSGMETYAGTLPTIRSLKLIRLHNLKHLWKQDVQVDRILPNLETLKVHLCDKLI SLGSSSASFQNLLTLDVWSCGAMICLVTSLAVQSLAQLKKLRIRECIFMKEIVGNVGD EATYDIVFSKLKSLELCDLPQIESFCSSNHTFGFPSLEEVIVSRCPQLEIFCKGVLNA PMLQRVQVTDKDGKGYWGGDLNSTVQQLYAEKVGYKGVEYVVLSEFSKSIEIWKDNLQ GVLDFVNLKHLEVCDCNNLKYILTVSMALDLQQLRVIKVNNCPMMEHIITNEEAEEAA MNSIVLPRLQQITLESCSNLRSFCLGSIIMECPSLQLIHVDDCPEMFAMASTFAAEKD AETVAAFFNDKQVAFPQLEKLTLKGMTNCRKIWPDQLVGDSFCKLNDLWVLECNRLLN IFPLSMRARLQNLEDFRIRGCDSLEEIFEHEALNTNDLHSVTATQSIAEETTTNFVFP TLTYLKLYMLPRLRSFCSMVHTTEWPSLKKMWIYGCHKMEIFASENIRSFGESTNQQP LFWVNEVTFPNLEELKLEWNDIMKEIWHGQLRANFFYKLKVLELIHFPDKSAVFPHCF IQSLPNLEKLVVSEASFSHIFHFEGFDGEKNRASAITSLNELVLSELPELTHLWKEEY HPIAAFCELRTLQVRDCGKLKILAPSAVSFENLTTLEVSRCHGYVNLIACSTAKSLVQ LTRMTITDCEMIEKIIACESEEVKGDIVFTELKYLQLSCLPNMASFCLGDHNLEFPIL EKMIVRECPKMKIFCQGDLSTPQLQKVILTEDGDEENGQWEGDLKTTIKRMFEEEEA" gene 38684038..38685531 /locus_tag="TCM_026501" /note="dbxref CacaoGD:Thecc1EG026501" mRNA 38684038..38685531 /locus_tag="TCM_026501" /product="Cc-nbs-lrr resistance-like protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026500t1" /inference="similar to AA sequence:Phytozome:POPTR_0019s12980.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.27 coverage" CDS 38684220..38684756 /locus_tag="TCM_026501" /note="paralog of Thecc1EG026500t1" /codon_start=1 /product="Cc-nbs-lrr resistance-like protein" /protein_id="EOY11256.1" /db_xref="Phytozome:POPTR_0019s12980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NCL4" /translation="MCLGTIRFFLLSLAALPGSSTNSQAKSLLQVTRMTITDCEMIKE TIACECDEVKRGIVFTQLKYLQLSGLPTLASFCLGDHNFEFPALGKMIVRECPKMKIF CQGYLSTPQLQKVIWTKDEDEENGWWEGDLKTTITRMFEEKVSIDLKDFLMLLCFLIL IFQLAFPCYPILIKRLLE" gene 38685578..38707122 /locus_tag="TCM_026502" /note="dbxref CacaoGD:Thecc1EG026502" mRNA join(38685578..38685726,38695180..38698109, 38698864..38699313,38699434..38700174,38700968..38701801, 38701969..38702418,38702567..38702980,38703157..38703660, 38704195..38705041,38705787..38705905,38706060..38706086, 38706519..38706641,38706766..38707122) /locus_tag="TCM_026502" /product="NB-ARC domain-containing disease resistance protein, putative" /inference="alignment:exonerate- protein:2:ricco:30128.m008690.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026500t1" /inference="similar to AA sequence:ricco:30128.m008690" /note="quality class is strong, express is medium, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc5t171" mobile_element 38694034..38694250 /note="source:CACAO_Again_on_S_E25_scaffold_1 134 352" /mobile_element_type="transposon:TIR/hAT" mobile_element 38694238..38694698 /note="source:CACAO_Again_on_S_E25_scaffold_1 3310 3754" /mobile_element_type="transposon:TIR/hAT" CDS join(38695569..38698109,38698864..38699313, 38699434..38700174,38700968..38701801,38701969..38702418, 38702567..38702980,38703157..38703660,38704195..38705041, 38705787..38705905,38706060..38706086,38706519..38706590) /locus_tag="TCM_026502" /note="dbxref ricco:30128.m008690; paralog of Thecc1EG026500t1" /codon_start=1 /product="NB-ARC domain-containing disease resistance protein, putative" /protein_id="EOY11257.1" /db_xref="TAIR:AT4G27190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9REY6" /translation="MEPILTGAAANLAAEAAKGIFQEMKSHIRYVIIYKKNVDKFEEK LKTLIAKRASVQQEVDAADRNGEKIKADVQHWSNTVDKVIIEEEKKVKDLEDKAKNKC FIGLCPNIKSRNQLSRKAEEGVATIDDLIQQCQFNGVGYRDVPEAILDASPKDFETFK SREKVFNDIMEATKDATINTIGLYGLAGMGKTSLVKEVARQVQELKLFDSVVTVIMTQ TPDIQNIQDQIAELLGLRLEDKSTVVRARRLCERLKKEKKVLVVLDNVWKKLDLEEVG IPFGNQHKGCKILLTSRDQNVLSNGMDAEKTFSIGDLDDEEAWDLFRKMVGDSVESAE LRSTAIEVAQRCARLPLAIATVARALRNKSLFAWEDALRQLQRPSSSNFTGISADVYS AIELSYNHLESDELKQTFLLCTLLRHDSSIDYLLQCAIGLGLINGVSTVKEARNRLLT LVSNLKASCLLLDNNLNDRYFDMHDLVYDVAVSIASKDNHVFALNEEVLEDWPNGEKM NKIYLRYPSIIGELPSELNCPEVVLFIFFSEDLSLKMPPSFFNQTKNLKVLDLSDMQF SSLPLSTCLLTSLRALFLNQCELRDITSIGELKNLEILNLSYSDIKILPKEIGRLVKL KVLDLGHCTKLKIISPGVLSSLSRLEELYMGGTFIQWEVGGHANQRGSIASLAELNTL SCLTTLEVHIPDAEAISRGLLFKELQKLIRYQIFIGKEWEWFGEYEHSRTLKLKLSTS IDHLDHGIKLLLKKTEALYLDDLKSVTIAMQEFKDEESLSHLKNLHIQNDSVIKYIII DNGIVDKNEFLQLQSLTLQNLPQLISFCSEDENGSTSRVQDELPLFSEKSLFPCLENL RLSSISVERIWHDSFCNHENLTSLIIENCGNLKRLLSFSMSRKLVHLKCFEIIGCKCL REIIFAEDIEEESKDTILFPQLNSLKLQDLQHLIGFLLERRNIEFPSLKSLKIEKCPE LKGFIYESTMEGSQNFSSQVLFDEKVAFLSLEKISISKLRNMKMIWKNRLAANSFHKL QEMEVEECDQLLTIFPSNMLRAFQGLQTLFVKNCVSLEEVFEVGRSNMEETGTVTTQL RLLYIGHLPSLKNIWKNDPKGIFTFENLRVISVWSCYNLKNVLPASVAKVLPQLRELR INNCGVEEIVSKEEGLETTVTFKFDQVCYLCLWRLPELKCFYPGVHTTKWPMLKKLKV SGCDKMKILGTERLSISDKAKVDGQLESTLIQPPLLLAEKVIPKLEKLSLNSDDVNAM ISDSQFSRSLFREIKVLRVCNSGDESVVFPITFLERFHNLEKLVVISYEFKELFCNER DSGMETYAGTLPTIRSLKLIRLDNLKHLWKQDVQVDRILPNLETLQVHQCDELISLGS SSASFQNLLTLDVCSCGAMICLVTSLAVQSLAQLKKLRIRQCISMKEIVGNEGDEATY NINFSKLKSLELCDLPQITSFCSGNHTFGFPSLEEVIVNKCPEMEIFCKGVLNAPMLE RVQVTDKDGKGHWGGDLNSTVQQLYAEKVGYKGVEYVVLSEFSKSTEIWKENPEGVFN FVNLTYLEVYKCKSLKYIFTVSMALDLLQLKEIKVRNCPMMEQIITREGAEEASIVLP RLQSITLRSCSNLRSFSLGSITMECPSLLCIDAVNCSKLLALASTFVGEKDTETVAAF FNDKVVCPNLEIVRLSSIDVQRIWDDQLPEMSSYVQNLKQLTVRGCRNLEEVIFIEGL PEDGMLSQIFPKLEILQFIGLPKLARFCHGSYFEFPLLRQLIMKNCPALKTFISDSTV TNETLICQKAKGNNSDIDSPPLFSEKVAFPQLKKLGIVGMANCRKIWPDQLVGYSFCK LNDLWVYECNRLLSIFPLNMRARLQNLEEFRIRECDSLEEIFEHEALNTNDLHSVTAT QSIAEETTTNFVFPKLTYLELYMLPRLRSFCSTIHTMEWPSLKEMWIYGCDKVEIFAS ENIRSFGESTNQQPLFWVNEVTFPNLEELKLEWNDIMKEIWHGQLRANFFYKLKVLEL IHFPDQSAVFPHCFIQSLPNLEKLVVSEASFSHIFHFEGFDGEKNHASAITSLNELVL SELPELTHLWKEEYHPIPAFCELRTLQVRDCGKLKILAPSSVSFENLTTLEVSRCHGY VNLIACSTAKSLVQLTRMTITDCEMIEKIIACESEEVKGDIVFTELKYLQLSCLPNMA SFCLGDHNLEFPILEKMIVRKCPKMKIFCQGDLSTPQLQKVILTEDGDEENGQWEGDL KTTIKRMFEEEVTGHSLIGYLLGVPPKGYRIPSIEELQDDRFATGSVDESLQASARSI SHKYFHFQNITECEGRNVGGDEPQAC" gene complement(38707570..38708400) /locus_tag="TCM_026503" /note="dbxref CacaoGD:Thecc1EG026503" mRNA complement(join(38707570..38707867,38708109..38708400)) /locus_tag="TCM_026503" /product="Histone superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g42760.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004504t1" /inference="similar to AA sequence:Phytozome:Glyma19g42760.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g15197t1" CDS complement(join(38707646..38707867,38708109..38708309)) /locus_tag="TCM_026503" /note="paralog of Thecc1EG004504t1" /codon_start=1 /product="Histone superfamily protein" /protein_id="EOY11258.1" /db_xref="Phytozome:Glyma19g42760.1" /db_xref="TAIR:AT1G08880.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7KPY2" /translation="MSSTGASTKGGRGKPKSSKSVSRSQKAGLQFPVGRIARFLKAGK YAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKL LGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF" mobile_element 38711899..38712093 /note="source:CACAO_hAT_E1487_scaffold_3 4 209" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(38712086..38712142) /note="source:MITE_hAT_11 676 731" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(38712092..38712606) /note="source:CACAO_on_E9_scaffold_2 1 486" /mobile_element_type="transposon:TIR/hAT" gene 38716306..38718850 /locus_tag="TCM_026504" /note="dbxref CacaoGD:Thecc1EG026504" mRNA join(38716306..38716350,38717192..38718850) /locus_tag="TCM_026504" /product="Alpha/beta-Hydrolases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s02980.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004494t2" /inference="similar to AA sequence:Phytozome:POPTR_0013s02980.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g11438t00001" CDS join(38716312..38716350,38717192..38718187) /locus_tag="TCM_026504" /note="paralog of Thecc1EG004494t2" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein" /protein_id="EOY11259.1" /db_xref="Phytozome:POPTR_0013s02980.1" /db_xref="TAIR:AT5G27320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HTZ8" /translation="MAGSNEVNLNECKMVVPLNTWVLISTYKLAYNLLRRPDGTFKRH LAEFLDRKVPANANPVDGVFSFDVIIDRSTSLFSRIYRPATAEEPQPNIVELEKPVMA EVVPVIIFFHGGSFAHSSANSAIYDTLCRRLVGVCKAVVVSVNYRRAPENRYPSAYDD GWTALKWVNSRSWLQSQKDSKVHIYLAGDSSGGNIAHHVAAQAVESGIDVLGNILLNP MFGGQERTESEKRLDGKYFVTLQDRDWYWRAFLPEGEDRDHPACNPFGPNGKSLEGIK FPKSLVVVAGLDLVQDWQMAYVEGLKNAGQEVKLLYLDQATIGFYLLPNNNHFHTVMG EISKFVSSNC" gene complement(38719034..38724743) /locus_tag="TCM_026505" /note="dbxref CacaoGD:Thecc1EG026505" mRNA complement(join(38719034..38719188,38721349..38724029, 38724616..38724743)) /locus_tag="TCM_026505" /product="Prefoldin chaperone subunit family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01022015001" /inference="similar to AA sequence:ricco:30128.m008696" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11191t1" gene 38719325..38720604 /locus_tag="TCM_026506" /note="dbxref CacaoGD:Thecc1EG026506" mRNA 38719325..38720604 /locus_tag="TCM_026506" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.23 coverage" CDS 38719809..38720027 /locus_tag="TCM_026506" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11261.1" /translation="MCSLTRIASAACEFKLIKMVLTVKALEGSITRKHFKASPTFKSP FYLFSLSKVKPFFQPGRYHASEYKMVKS" CDS complement(38721672..38723621) /locus_tag="TCM_026505" /note="dbxref ricco:30128.m008696" /codon_start=1 /product="Prefoldin chaperone subunit family protein, putative" /protein_id="EOY11260.1" /db_xref="TAIR:AT5G27330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MZP3" /translation="MARKKQSHQAKDHKQQNPSQETHDPVKVSTFTESYKPLSRQSSM EDANEKLQNLKSLNALLLKEAVEKRQQIESLVHAMEALEAELSERKELEVEESEKNLS LEFQHGLLWVYMNTQMREMGAGREREIGELKSKVDGLMGSLENESQRLSLVCKERDLA RSDFELQVKESSLMKEKLMKMEKNERKFVEEIEKLKVGYDRLVGEKEELEKVKSSVVK DRDVLEKNMEDMVKKVESLRREIEGVVREKKGIEMEKNEQRVNIDQMEKEMRKMSEVI MSLRKEEGILRSKVFELEKNCGEAMDREAERAIEIGALVEEKRAKERSIERLRKEKDS VSKLLEMTMVESDDMQRRIEKLLEESDITRRVLEMNEKELNDLQRKIEELVGDKIEIE KVKISRENENSELRNEVSELRNVVNRLQEACEDHEKKDKELISEVSRFRNSFDQVTLE RDNALKGLDEEKQNGVNLRTKVSEVQKLLEKTAEELAQKRAEWQNLIKEKQGMESHFG SMSEDKDKLQKDLLEAKRSINDLRAKMESTSINYERALTMLKNTATLLCRSKDENDRK VKEEAAITEQKLEDEIQPYAAELEAIKQAFKNKEKTSQDLKQKVEFMEKSMVEAQKKK SFWTLVSSATTLLAAISVAYAARGR" gene 38724838..38732787 /locus_tag="TCM_026507" /note="dbxref CacaoGD:Thecc1EG026507" mRNA join(38724838..38725107,38725385..38725568, 38725853..38726032,38726279..38726389,38726687..38727001, 38727081..38727257,38727352..38727627,38727861..38727983, 38728205..38728402,38728630..38728883,38729142..38729343, 38729469..38729840,38729955..38730251,38732151..38732787) /locus_tag="TCM_026507" /product="Inosine-uridine preferring nucleoside hydrolase family protein" /inference="alignment:exonerate- protein:2:frave:gene06647.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021097t1" /inference="similar to AA sequence:ricco:29726.m003955" /note="quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.38 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11149t1" CDS join(38725058..38725107,38725385..38725568, 38725853..38726032,38726279..38726389,38726687..38727001, 38727081..38727257,38727352..38727627,38727861..38727983, 38728205..38728402,38728630..38728883,38729142..38729343, 38729469..38729840,38729955..38730251,38732151..38732249) /locus_tag="TCM_026507" /note="dbxref ricco:29726.m003955; paralog of Thecc1EG021097t1" /codon_start=1 /product="Inosine-uridine preferring nucleoside hydrolase family protein" /protein_id="EOY11262.1" /db_xref="TAIR:AT5G18860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HM89" /translation="MYAFVWNHEVRRLFSQRVMRVVWVVAMIGGLGAFVSFVDPDHHL HQPHRILVDTDVDTDDVFALFYLLKQDRTQFHLQGITINANGWSDAGHAINHVYDILF MMDRDDIPVGVGGEGGILPNGTILPNVGGYQPIIDQEMSTAGECRYRQAIPVARRGRL DVNSNYGLRKAFLPQGSRRYTPLQQPTAQEVMIDAISSGPTTVFLLGAHTNFAIFLMS NPDLKKNVKHIYVMGGSVRSNCPKNDSSDNSGECPNIGNLYPQDSNPYAEFNIFSDPF AAYKVFHSGIPVTLVPLDATNTIPLSRSFFMEFERRQDTYEAKYCFQALKIIRDTWLS DVFHEQYCMWDSFLVGVALSIMRNSHNGENEFAEMQYMNISVVTSNEPYGISDGSNPL ITGNSMPKFKVDKDGVHSGHVQMGMQDPFCIQKGKGKCQDGYTKEDTGEDAVRVLVAM KAKSNHDNGSSLQKEFYKSFLRVINSPKQTGRFDIRKQYPFHREVLHKPDFGKKMSGK PVVFDMDMSAGDFLALLYLLKLPVEKINLKGILISSTGWATSATIDVVYDILHMMGHD DIPVGLGKAFAVGQANPAFSAIGDCKYSKAIPYGSGGYLDSDTLYGHARDLPRSPRRY TAENSVKFGASRDTDHPELRQPSALDVWKSIVDSLDPGSKITLLTNGPLTNLAEIILS ENASSMIQKHQAWTSGPNDDTVYFYLLMQGVYIVGGHIAYLYDSGKGNLFTVPSNEYA EFNMFLDPLAAKEVFTSSLDITLVPLQMQRRVSSFSTILNRMNVTAPTPEALFVQRLL SRLWQLQQEYYRYHHMDIFLGEILGAVVLAANPHLNQTFRLKPLKVLGDGDITKIGEI IIDKEQGKQVHVLENVNPQAYYDHFAMVLGDHRQSAVLGSFHEQERMWNSPAVKTNMS CLHLDELIQADQYMEKHLIVNLADLVWLTSN" gene complement(38732984..38735231) /locus_tag="TCM_026508" /note="dbxref CacaoGD:Thecc1EG026508" mRNA complement(join(38732984..38733478,38733605..38733677, 38733771..38733842,38734374..38734442,38734584..38734714, 38734928..38735155)) /locus_tag="TCM_026508" /product="Histidine-containing phosphotransfer protein 1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s02950.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004489t1" /inference="similar to AA sequence:ricco:30128.m008699" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc105t1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc111t1" mRNA complement(join(38733155..38733490,38733605..38733677, 38733771..38733842,38734374..38734442,38734584..38734714, 38734928..38735231)) /locus_tag="TCM_026508" /product="Histidine-containing phosphotransfer protein 1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s02950.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004489t1" /inference="similar to AA sequence:ricco:30128.m008699" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc111t1" CDS complement(join(38733446..38733478,38733605..38733677, 38733771..38733842,38734374..38734442,38734584..38734714, 38734928..38734987)) /locus_tag="TCM_026508" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30128.m008699; paralog of Thecc1EG004489t1" /codon_start=1 /product="Histidine-containing phosphotransfer protein 1 isoform 2" /protein_id="EOY11264.1" /db_xref="TAIR:AT3G21510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZNV9" /translation="MDVVKLQKQLVDYRASLYHEAFLDEQFTQLQELQDENNPDFVVE VVSLFFEDSERLLNELAKALEQQSIDFKRVDAHVHQLKGSSSSIGAQRVQKVCITFRN YCEEQNVEGCLKCLQQVKHEYSLVKTKLETMFKILAAGGSIPM" CDS complement(join(38733446..38733490,38733605..38733677, 38733771..38733842,38734374..38734442,38734584..38734714, 38734928..38734987)) /locus_tag="TCM_026508" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30128.m008699; paralog of Thecc1EG004489t1" /codon_start=1 /product="Histidine-containing phosphotransfer protein 1 isoform 1" /protein_id="EOY11263.1" /db_xref="TAIR:AT3G21510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZNV9" /translation="MDVVKLQKQLVDYRASLYHEAFLDEQFTQLQELQDENNPDFVVE VVSLFFEDSERLLNELAKALEQQSIDFKRVDAHVHQLKGSSSSIGAQRVQKVCITFRN YCEEQNVEGCLKCLQQVKHEYSLVKTKLETMFKLQQQILAAGGSIPM" mobile_element 38735279..38735324 /note="source:CACAO_on_SS_E42_scaffold_2 8458 8503" /mobile_element_type="transposon:TIR/Mutator" gene complement(38738171..38752924) /locus_tag="TCM_026509" /note="dbxref CacaoGD:Thecc1EG026509" mRNA complement(join(38738171..38738739,38738909..38739290, 38739378..38739433,38739517..38739641,38740037..38740194, 38740272..38741072,38741162..38741407,38741702..38742145, 38742460..38742918,38744276..38744355,38747048..38747213, 38748327..38748476,38748562..38748697,38748779..38748858, 38750100..38750254,38750339..38750590,38750809..38751171, 38751280..38751392,38752302..38752924)) /locus_tag="TCM_026509" /product="Autophagy 18 H" /inference="alignment:exonerate- protein:2:ricco:30128.m008700" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004488t1" /inference="similar to AA sequence:frave:gene22349" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11189t1" CDS complement(join(38738735..38738739,38738909..38739290, 38739378..38739433,38739517..38739641,38740037..38740194, 38740272..38741072,38741162..38741407,38741702..38742145, 38742460..38742918,38744276..38744355,38747048..38747213, 38748327..38748476,38748562..38748697,38748779..38748858, 38750100..38750254,38750339..38750590,38750809..38751171, 38751280..38751392,38752302..38752339)) /locus_tag="TCM_026509" /note="dbxref frave:gene22349; paralog of Thecc1EG004488t1" /codon_start=1 /product="Autophagy 18 H" /protein_id="EOY11265.1" /db_xref="TAIR:AT1G54710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MZP5" /translation="MADVIDHQGATSSENSKDSGDRPEKNSENEVVQARHRRQGAIIS SYASACELRVLNKENEKKDGSSPKGVLEACLEGLESNIISYVDSPKAEIRCTNGGALA NWRKFFKLWKRRSRKHLAAFTPLAVPKLSRKNSRSTKENPVLRDLYNFKSSLEDFSLP ELRAATDNFSQENLIGKGGYAEVYKGRLKDGKLVAIKRLIKGTPDERTAGFLSELGII AHVNHPNTATLIGCGIDGGMHLVFQLSPLGSLGSVLHGSKGVLDWNKRYKIALGTADG LTYLHETCERRIIHRDIKADNILLTENFEPQICDFGLAKWLPKQWTHHNVSKFEGTFG YFAPEYFMHGIVDEKTDVYAFGVLLLELITGRRALDDQQQSVVLWAKPLLDENDIKEL VDPSLGDDYDAEEVDRMVLTASLCIEQSPILRPQMSQVVILLRGDEYVAADCAKEPHR RSIQRTYSNELLDAQEYNSTKHLNNINRLREIALASSGVRSASASVAASISGDSVEHN KDQVLWASFDRLELSPSSFKHVLLLGYSNGFQVLDVEDASNVSELVSRRDDPVTFLQM QPLPIKSEGREGFRASHPLLLVVACDESKGSGLMLGGRDGLARDGFDEPQSGNVLISP TAVRFYSLRSHNYVHVLRFRSTVYMVRCSPRIVAVGLATQIYCLDALTLENKFSVLTY PVPQAGGQGMRGINIGYGPMAVGPRWLAYASNNPLQSNTGRLSPQNLTPSPGVSPSTS PSSGSLVARYAMESSKQLAAGLINLGDMGYKTLSKYYQDLIPDGSGSPVSSNSGWKVG RGASHSAETDIAGMVVVKDFVSRAVVSQFRAHASPISALCFDPSGTLLVTASIHGNNI NIFRIMPSSVKNGSGTQNYDWSSSHVHLYKLHRGMTSAVIQDICFSAYSQWIAIVSSR GTCHIFVLSPFGGENVLQIHNSHVDGATLSPAVSLPWWSTLSFMTNYQTFSSPAPPTV TLSVVSRIKNGNSGWLNTVTNAASSATGKASFPSGAFSAVFHNSLPNVLQRAQVKANV LENLLVYTPSGHVVQHKLLPSFGGEAGESASRIGPGSAVQVQEEELRVKVEAMQAWDV CRRTDWPEREECLSGMTHGRKEALEMIADVSDSEDNEAGHKDLSKPQDQSHLYLANAE VQISSGRIPIWQNPRVSFYTMSPLGLDECNGGEIEIEKIPAHEVEIRQRDLLPVFEHF QRVQSEWNDRGFDGEKYPMSSSHDAKARFSEVTVISHSKLMSPSSVENSDSGSSRNSS PTSIQSGKDSSGGVCHVEDRNSTNSLSSLTNGSLSGGRTVGKEVQFPNSGGTSEVSNT SSNRSDLSLNMLDEGPVNDSPDFEQFFQEEYCKALPLSACREPTEVVTDVDSGSGPYD REKSEEEGDNDEMLGGVFAFSEEG" gene 38755108..38757461 /locus_tag="TCM_026510" /note="dbxref CacaoGD:Thecc1EG026510" mRNA 38755108..38757461 /locus_tag="TCM_026510" /product="Receptor-like kinase in in flowers 3, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01022022001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004486t1" /inference="similar to AA sequence:frave:gene27748" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS 38755190..38757175 /locus_tag="TCM_026510" /note="dbxref frave:gene27748; paralog of Thecc1EG004486t1" /codon_start=1 /product="Receptor-like kinase in in flowers 3, putative" /protein_id="EOY11266.1" /db_xref="TAIR:AT2G48010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9P5S2" /translation="MQPFCQSFRSQMSSFYFILLGLSFCFRNPSSSVAIYHEIPHRNL ADSFCPLSFRVLRKVFDSSKLAFLDVPTKCVTILQGIRLVRSNYLRITGNFFPHPNSS EDCWDGYQKLVDESIPGFNIRSTCGYNTGLISESCKNITTGYQFEGLISDSKLQEVRL LCNRSLDDDSSCIPCQASLSSIYQSYFHGTDIDNASDCSGYPFIYAGALANQYGPTAS GTAKCLFSLDLTSSNATSRNQRTILCAVTVGAGFGLFMTAVVVWFIWRRRKKWKRRQN NVAPIETGSGFGIETISGDSTLVKFTFEEIKRATKNFSRENIVGKGGYGNVYKGILED GSEVALKRFKNCSAAGDATFAREVEVIASISHVNLVAFRGYCTATVPMEGHQRIIVCD LVHNGSLYDHLFGSGVKKLSWPIRQKIAIGVARGLAYLHYGAQPVIIHRDVKASNILL DDTFEPKLADFGLAKFIPDGLSHMSTRAAGTLGYVAPEYALYGQLTERSDVYGFGVVL LELLSGKKAVISIDDHHTLLLTDWAWSLVEEGRVFDVIDENMPELGPPEVMERYVLVA VLSSHSQLYARPTMDQIVRILESDFPLHSIPKLPFSLPTDTDDGEKSANFSQLDSMSS TSAEQPCDCKSDQPILDHREIERSFTFKTCNVDNLTF" gene 38758101..38763096 /locus_tag="TCM_026511" /note="dbxref CacaoGD:Thecc1EG026511" mRNA join(38758101..38758683,38758988..38763096) /locus_tag="TCM_026511" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g34840.1.8" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040529t1" /inference="similar to AA sequence:frave:gene30122" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.14 coverage; weak similarity to Cysteine-rich RLK (RECEPTOR-like protein kinase) 8; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc3238t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc6015t1" mobile_element 38758855..38758916 /note="source:INTACT893F_F67_scaffold_6-int 434 493" /mobile_element_type="retrotransposon:LTR/Copia" CDS 38759001..38762957 /locus_tag="TCM_026511" /note="dbxref frave:gene30122; paralog of Thecc1EG040529t1; weak similarity to Cysteine-rich RLK (RECEPTOR-like protein kinase) 8" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11267.1" /db_xref="TAIR:AT4G23160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BMR0" /translation="MASSNYSIAAPPVFNGNNYPMWAVKMKAYLKAFDLWEVVEVGGD PPARQANPTIAQMKQYNEEVAKRFKALSCIHSAVTDAIFVRIMACESAKEAWDKIKEE FHGSDRTRQIQILNLLREFEVLKMKDEETMKDYSDKVLRVVNQLRLFGENITERRVVN KFLVSLPEKFESKISSLEDSKDLTTMSVSELINALQAQEQRRALRQEDHVEAALAARR VDKRTSSGSHKKSEYEKKDKDKRYEEKKQGKKWQFPPCSYCKKKNHIERYCWYRPHVK CRACNQKGHVEKVCKNKENRVEEKAAIVEQKEDAEETLFMVIESNDSKKDSIWLIDSA CSTHITGKIKNFLDLNKAYKSTVEIGDGNLLKIAGRGTVGITTKKGMKTIANVCFAPE VTQNLLSVGQLVKEKNSLLFKDELCTIFDPSGREIATVKMRNKCFPLDLNEAGHMAYK CVSNEARLWHRRLGHINYQFIKNMGSLNLVNDMPIITEVEKTCEVCLQGKQSRHPFPK QSQTRTANRLQLIHTDICGPIGTLSLNGNKYFILFIDDFSRFCWIFFLKQKSEAIQYF MKFKVLVEKQTDQKIKALRSDNGSEYTSNEFKALLTQEGIKQFLTVPYSPQQNGVSER KNRTIMEMIRCLLFEQQMPKYFWAEAANFAVTLQNLIPTTALNSMTPFEVWHGYKPSI SNVKVFGCIAYAQVPQQKRTKLDSKTQISINLGYSSVSKGYRLFNVETKKVFISRDVV FNEDIHWNWMKNEIAENNNDNVAVNLDVFEEEAGHELDDNIDDMPVRGIRSLQDIYEQ CNVAITDPCSYIEAASDEQWKLAMEAEMTMIKRNQTWILVDRPKHQRVISVKWIFRTK LNSDGSINKLKARLVVRGFSQVHGVDFFETFAPVARHDTIRLLVALAGREKWRIWHMD VKSAFLNGTISEDIYVEQPEGFVEKGKEDKVCKLIKALYGLKQAPRAWYKKIDAYLRS NKFFCSESEPTLYVKSSLGKIQLIVSVYVDDLLITGPNKSDLNSFRNKMKSEFDMSDL GEMSYFLGLEIQQRSDFICLHQKKYAGELLKRFKMEGCKPVSTPLTTGTKLCKDDGST LVDVTQYRKLIGCLLYLSASRPDIMYTTSLLSRFMQSPTKTHLTAAKRVLRYVKGTLN YGLLYGQVENKELEGYSDSDWAGSYDDSKSTSGYCFSFGSAMFSWNSKKQDIVAQSSA EAEYVAAASATNQALWLRKVLLDLKFEQINPTVLWLDNQSAIALAKNPINHSRTKHIR IKFHVIREAVTNNEVVVNYCGTDDQIADIFTKGLCREKFELLRSKLGMGNVDFKEV" gene 38763221..38766177 /locus_tag="TCM_026512" /note="dbxref CacaoGD:Thecc1EG026512" mRNA join(38763221..38765201,38766007..38766177) /locus_tag="TCM_026512" /product="Receptor-like kinase in in flowers 3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026510t1" /inference="similar to AA sequence:ricco:30128.m008703" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.16 coverage" CDS 38763254..38765122 /locus_tag="TCM_026512" /note="dbxref ricco:30128.m008703; paralog of Thecc1EG026510t1" /codon_start=1 /product="Receptor-like kinase in in flowers 3" /protein_id="EOY11268.1" /db_xref="TAIR:AT2G48010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9P5S2" /translation="MKFSLINILKRSTLSTFFTLVAVLTFFEISISTAYCQRISNETL VKDSCPLNFDILRNLVNEDPARTEFGSITTKCQNILGGIHLVQSKYLQTNGYFVPPPI TSEACWESYQKLIGEFVNDFDIETSCGYHAEWISKTCMNVTSRAQFESLIPGTKLNKL RYYCTQSLDKSFACGMCTSKLFRLRKVYLDDIDDTAGNISACSWYPNMYTAAFVNQFG PTDRATAKCLFSMEFKPKKSSSRQHRSIIAGVTVGSLVGLLGALAVILFLLMRRRKKN KKEKINPVMEKNDSVKDETSLVFGFGLYSKSTSLIKFKIDEIKNATTNFSRKNIIGMG GYGNVYKGILPDGSEVAIKRFKNCSVAGDANFVHEVEVIASVKHVNLVALRGFCTATV PLGGHQRLIVCDLMQNGSLHDHLFGSGKKKLSWPVRQKIALGTARGLAYLHHGLHPAI IHRDIKASNILLDETFEPKVADFGLAKINSEGTTHLSTRVAGTLGYVAPEYALYGQLT QKSDVYSFGVVLLELLSGKKANSSNEGKILRLTDWAWELVQQGKALDVIEQGMPEIKS PEAMEQYVFIAVLCCHPVLHARPTMDQIVKIFETGFPALSVPGACLVPCNIEVCSD" mobile_element 38765436..38765592 /note="source:CACAO_PIF_E220_scaffold_7 1825 1975" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 38766831..38771530 /locus_tag="TCM_026513" /note="dbxref CacaoGD:Thecc1EG026513" mRNA join(38766831..38766895,38766983..38767170, 38767273..38767335,38767440..38767529,38767637..38767696, 38767779..38767844,38767962..38768027,38768175..38768250, 38768339..38768403,38768688..38768780,38768883..38768963, 38769069..38769153,38769239..38769282,38769362..38769424, 38769531..38769590,38769677..38769730,38769981..38770040, 38770148..38770262,38770447..38771530) /locus_tag="TCM_026513" /product="Sugar transporter, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01022022001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004484t2" /inference="similar to AA sequence:Phytozome:GSVIVT01022022001" /note="quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc4908t1" CDS join(38767009..38767170,38767273..38767335, 38767440..38767529,38767637..38767696,38767779..38767844, 38767962..38768027,38768175..38768250,38768339..38768403, 38768688..38768780,38768883..38768963,38769069..38769153, 38769239..38769282,38769362..38769424,38769531..38769590, 38769677..38769730,38769981..38770040,38770148..38770262, 38770447..38770559) /locus_tag="TCM_026513" /note="paralog of Thecc1EG004484t2" /codon_start=1 /product="Sugar transporter, putative" /protein_id="EOY11269.1" /db_xref="Phytozome:GSVIVT01022022001" /db_xref="TAIR:AT3G05150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RF01" /translation="MATSQDIENGSASLLQPFTQKEENQQNSHGNGSLFMVLLSTFVA VMGSFEFGSSIGFSSPTQQATMEELEMSPSEFSVFGSILTIGAMVGAITSGRAADLIG RIETMRMSSIICITGWLIIYLALGTLSLNFGRFLTGFGIGVNSYVVPIFIAEITPTHL RGALLTLHQVSLATGLLVAYAVGALVTWRTLALTGMIPCAVMIIGLCFIPESPRWLAM VGYQNEFHAALQMLHGHNADVSGEEAEIQDSLAILQHLPKATAKDLFRKRNLHLVIIG VGLMVFQQFSGYNGIVFYADQIFTSAGVPPNVGSILYACLQIIILALGAVIIDKAGRR PLLMISASGMLLGSLLTGASFYLKEHHMASDLAPVFTIIGIMVDMGSYCLGLGGIPWI VMSEIFPIHIKGIAGSLVTLVSWGGSWVVSYSFNFLMIWSPHGAFFVFATFCAVAMVF IFKLVPETKGRTLEEIQASVD" gene 38771576..38789518 /locus_tag="TCM_026514" /note="dbxref CacaoGD:Thecc1EG026514" mRNA join(38771576..38771604,38773806..38773859, 38775708..38776190,38776279..38776341,38776870..38776959, 38777048..38777107,38777368..38777433,38777529..38777594, 38777671..38777746,38777832..38777896,38777966..38778058, 38778307..38778391,38778483..38778526,38778620..38778682, 38778768..38778827,38778921..38778974,38779059..38779115, 38779236..38779350,38779442..38780011) /locus_tag="TCM_026514" /product="Sugar transporter ERD6 14 isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT4G04760.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026515t1" /inference="similar to AA sequence:Phytozome:GSVIVT01022034001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:PASA:2:TSA:puevd3b025644t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11231t4" mRNA join(38771576..38771604,38773806..38773859, 38775708..38776190,38776279..38776341,38776870..38776959, 38777048..38777107,38777368..38777433,38777529..38777594, 38777671..38777746,38777832..38777896,38777966..38778058, 38778142..38778222,38778307..38778391,38778483..38778526, 38778620..38778682,38778768..38778827,38778921..38778974, 38779059..38779115,38779236..38779350,38779442..38779949) /locus_tag="TCM_026514" /product="Sugar transporter ERD6 14 isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT4G04760.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026515t1" /inference="similar to AA sequence:frave:gene22329" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11231t4" mobile_element complement(38772049..38772481) /note="source:CACAO_Again_on_E73_scaffold_3 519 945" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(38772597..38775091) /note="source:CACAO_on_SS_E42_scaffold_2 19407 21872" /mobile_element_type="transposon:TIR/Mutator" mobile_element 38775090..38775529 /note="source:CACAO_hAT_E410_scaffold_1 4651 5108" /mobile_element_type="transposon:TIR/hAT" mobile_element 38775431..38775543 /note="source:scaffold_3_CACTA_0398 4250 4385" /mobile_element_type="transposon:TIR/CACTA" mRNA join(38775784..38776190,38776279..38776341, 38776870..38776959,38777048..38777107,38777368..38777433, 38777529..38777594,38777671..38777746,38777832..38777896, 38777966..38778058,38778142..38778222,38778307..38778391, 38778483..38778526,38779440..38779896,38783616..38783705, 38789498..38789518) /locus_tag="TCM_026514" /product="Sugar transporter ERD6 14 isoform 3" /inference="alignment:exonerate- protein:2:TAIR:AT4G04760.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026515t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s02850.3" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc847t12; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11231t4; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc762t11" mRNA join(38775784..38776190,38776279..38776341, 38776870..38776959,38777048..38777107,38777368..38777433, 38777529..38777594,38777671..38777746,38777832..38777896, 38777966..38778058,38778307..38778391,38778483..38778526, 38779440..38779894) /locus_tag="TCM_026514" /product="Sugar transporter ERD6 14 isoform 6" /inference="alignment:exonerate- protein:2:TAIR:AT4G04760.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026515t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s02850.3" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc847t9_C1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11231t4; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc762t11" CDS join(38775999..38776190,38776279..38776341, 38776870..38776959,38777048..38777107,38777368..38777433, 38777529..38777594,38777671..38777746,38777832..38777896, 38777966..38778058,38778142..38778222,38778307..38778391, 38778483..38778526,38778620..38778682,38778768..38778827, 38778921..38778974,38779059..38779115,38779236..38779350, 38779442..38779566) /locus_tag="TCM_026514" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene22329; paralog of Thecc1EG026515t1" /codon_start=1 /product="Sugar transporter ERD6 14 isoform 1" /protein_id="EOY11270.1" /db_xref="TAIR:AT4G04750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GXK5" /translation="MGQQRREVTESLLVRHGHGDLVHTEENIGVVVGGGGSVAASSVT TILALSTFVAACVSFGFGCAIGYSSPTQSSIMEDLGLSMADFSLFGSILNIGAILGAV ISGKITDLLGRKLTMWILNIFYISGWLAIAFTKVPWLLDLGRLSLGFTNGISGYLVPI YIAEITPKNLRGRFTAIVPLMTCWGMSSMYVVGSFVSWRTLALIAIIPSILQLPLLSF IPESPRWLANVGRDKELESALLCLRGEKAYISDEATDIKHYVDSLKSISEEGILDVFQ KKYVRPLLIVAGMVALLSLGGVNAFTYYSGVIFVSAGISSMIGLIALAAAQTLLGFLG TIFIDKSGRRPLLLVALAGLCFSSFLTGLSFLLKDYNWWGEGTPILALIGILMYKGSF VVAVGIPWLLVAELFPINVKGSAGSICNFISGITGWAVAYYFNLLTKWSSAGTFFIFS AFCCANFILAATMVPETKGRTLEEIQASITHSSQ" CDS join(38775999..38776190,38776279..38776341, 38776870..38776959,38777048..38777107,38777368..38777433, 38777529..38777594,38777671..38777746,38777832..38777896, 38777966..38778058,38778307..38778391,38778483..38778526, 38778620..38778682,38778768..38778827,38778921..38778974, 38779059..38779115,38779236..38779350,38779442..38779566) /locus_tag="TCM_026514" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG026515t1" /codon_start=1 /product="Sugar transporter ERD6 14 isoform 2" /protein_id="EOY11271.1" /db_xref="Phytozome:GSVIVT01022034001" /db_xref="TAIR:AT4G04750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TV05" /translation="MGQQRREVTESLLVRHGHGDLVHTEENIGVVVGGGGSVAASSVT TILALSTFVAACVSFGFGCAIGYSSPTQSSIMEDLGLSMADFSLFGSILNIGAILGAV ISGKITDLLGRKLTMWILNIFYISGWLAIAFTKVPWLLDLGRLSLGFTNGISGYLVPI YIAEITPKNLRGRFTAIVPLMTCWGMSSMYVVGSFVSWRTLALIAIIPSILQLPLLSF IPESPRWLANVGRDKELESALLCLRGEKAYISDEATDIKIVAGMVALLSLGGVNAFTY YSGVIFVSAGISSMIGLIALAAAQTLLGFLGTIFIDKSGRRPLLLVALAGLCFSSFLT GLSFLLKDYNWWGEGTPILALIGILMYKGSFVVAVGIPWLLVAELFPINVKGSAGSIC NFISGITGWAVAYYFNLLTKWSSAGTFFIFSAFCCANFILAATMVPETKGRTLEEIQA SITHSSQ" CDS join(38775999..38776190,38776279..38776341, 38776870..38776959,38777048..38777107,38777368..38777433, 38777529..38777594,38777671..38777746,38777832..38777896, 38777966..38778058,38778142..38778222,38778307..38778391, 38778483..38778526,38779440..38779514) /locus_tag="TCM_026514" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG026515t1" /codon_start=1 /product="Sugar transporter ERD6 14 isoform 3" /protein_id="EOY11272.1" /db_xref="Phytozome:POPTR_0013s02850.3" /db_xref="TAIR:AT4G04750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MZS5" /translation="MGQQRREVTESLLVRHGHGDLVHTEENIGVVVGGGGSVAASSVT TILALSTFVAACVSFGFGCAIGYSSPTQSSIMEDLGLSMADFSLFGSILNIGAILGAV ISGKITDLLGRKLTMWILNIFYISGWLAIAFTKVPWLLDLGRLSLGFTNGISGYLVPI YIAEITPKNLRGRFTAIVPLMTCWGMSSMYVVGSFVSWRTLALIAIIPSILQLPLLSF IPESPRWLANVGRDKELESALLCLRGEKAYISDEATDIKHYVDSLKSISEEGILDVFQ KKYVRPLLIVAGMVALLSLGGVNAFTYYSGVIFVSAGISSMIGLIALAAAQRNILYIF SLLLCKFHPSSNNGAGD" CDS join(38775999..38776190,38776279..38776341, 38776870..38776959,38777048..38777107,38777368..38777433, 38777529..38777594,38777671..38777746,38777832..38777896, 38777966..38778058,38778307..38778391,38778483..38778526, 38779440..38779514) /locus_tag="TCM_026514" /note="encoded by transcript variant 6; alternatively spliced; paralog of Thecc1EG026515t1" /codon_start=1 /product="Sugar transporter ERD6 14 isoform 6" /protein_id="EOY11275.1" /db_xref="Phytozome:POPTR_0013s02850.3" /db_xref="TAIR:AT4G04750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MZS5" /translation="MGQQRREVTESLLVRHGHGDLVHTEENIGVVVGGGGSVAASSVT TILALSTFVAACVSFGFGCAIGYSSPTQSSIMEDLGLSMADFSLFGSILNIGAILGAV ISGKITDLLGRKLTMWILNIFYISGWLAIAFTKVPWLLDLGRLSLGFTNGISGYLVPI YIAEITPKNLRGRFTAIVPLMTCWGMSSMYVVGSFVSWRTLALIAIIPSILQLPLLSF IPESPRWLANVGRDKELESALLCLRGEKAYISDEATDIKIVAGMVALLSLGGVNAFTY YSGVIFVSAGISSMIGLIALAAAQRNILYIFSLLLCKFHPSSNNGAGD" mRNA join(38777141..38777433,38777529..38777594, 38777671..38777746,38777832..38777896,38777966..38778058, 38778142..38778222,38778307..38778391,38778483..38778526, 38778620..38778682,38778768..38778827,38778921..38778974, 38779059..38779115,38779236..38779350,38779442..38780011) /locus_tag="TCM_026514" /product="Sugar transporter ERD6 14 isoform 4" /inference="alignment:exonerate- protein:2:TAIR:AT4G04760.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026515t1" /inference="similar to AA sequence:frave:gene22329" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:PASA:2:TSA:puevd3b025644t1a3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11231t4" mRNA join(38777141..38777433,38777529..38777594, 38777671..38777746,38777832..38777896,38777966..38778058, 38778307..38778391,38778483..38778526,38778620..38778682, 38778768..38778827,38778921..38778974,38779059..38779115, 38779236..38779350,38779442..38779806) /locus_tag="TCM_026514" /product="Sugar transporter ERD6 14 isoform 5" /inference="alignment:exonerate- protein:2:TAIR:AT4G04760.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026515t1" /inference="similar to AA sequence:Phytozome:GSVIVT01022034001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00460t00004; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11231t4; inference alignment:Newbler:10:TSA:cgbaP1_g01360t00002" CDS join(38777332..38777433,38777529..38777594, 38777671..38777746,38777832..38777896,38777966..38778058, 38778142..38778222,38778307..38778391,38778483..38778526, 38778620..38778682,38778768..38778827,38778921..38778974, 38779059..38779115,38779236..38779350,38779442..38779566) /locus_tag="TCM_026514" /note="encoded by transcript variant 4; alternatively spliced; dbxref frave:gene22329; paralog of Thecc1EG026515t1" /codon_start=1 /product="Sugar transporter ERD6 14 isoform 4" /protein_id="EOY11273.1" /db_xref="TAIR:AT4G04750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GXK5" /translation="MIHTKIIMCFQKVPWLLDLGRLSLGFTNGISGYLVPIYIAEITP KNLRGRFTAIVPLMTCWGMSSMYVVGSFVSWRTLALIAIIPSILQLPLLSFIPESPRW LANVGRDKELESALLCLRGEKAYISDEATDIKHYVDSLKSISEEGILDVFQKKYVRPL LIVAGMVALLSLGGVNAFTYYSGVIFVSAGISSMIGLIALAAAQTLLGFLGTIFIDKS GRRPLLLVALAGLCFSSFLTGLSFLLKDYNWWGEGTPILALIGILMYKGSFVVAVGIP WLLVAELFPINVKGSAGSICNFISGITGWAVAYYFNLLTKWSSAGTFFIFSAFCCANF ILAATMVPETKGRTLEEIQASITHSSQ" CDS join(38777332..38777433,38777529..38777594, 38777671..38777746,38777832..38777896,38777966..38778058, 38778307..38778391,38778483..38778526,38778620..38778682, 38778768..38778827,38778921..38778974,38779059..38779115, 38779236..38779350,38779442..38779566) /locus_tag="TCM_026514" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG026515t1" /codon_start=1 /product="Sugar transporter ERD6 14 isoform 5" /protein_id="EOY11274.1" /db_xref="Phytozome:GSVIVT01022034001" /db_xref="TAIR:AT1G54730.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q3ECP7" /translation="MIHTKIIMCFQKVPWLLDLGRLSLGFTNGISGYLVPIYIAEITP KNLRGRFTAIVPLMTCWGMSSMYVVGSFVSWRTLALIAIIPSILQLPLLSFIPESPRW LANVGRDKELESALLCLRGEKAYISDEATDIKIVAGMVALLSLGGVNAFTYYSGVIFV SAGISSMIGLIALAAAQTLLGFLGTIFIDKSGRRPLLLVALAGLCFSSFLTGLSFLLK DYNWWGEGTPILALIGILMYKGSFVVAVGIPWLLVAELFPINVKGSAGSICNFISGIT GWAVAYYFNLLTKWSSAGTFFIFSAFCCANFILAATMVPETKGRTLEEIQASITHSSQ " gene 38780060..38785047 /locus_tag="TCM_026515" /note="dbxref CacaoGD:Thecc1EG026515" mRNA join(38780060..38780681,38780913..38780975, 38781073..38781162,38781271..38781330,38781486..38781551, 38781647..38781712,38781789..38781864,38781948..38782012, 38782265..38782357,38782452..38782532,38782618..38782702, 38782791..38782834,38782918..38782955,38783056..38783115, 38783209..38783275,38783437..38783496,38783591..38783705, 38783798..38783988,38784850..38785047) /locus_tag="TCM_026515" /product="Sugar transporter ERD6 14" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026514t1" /inference="similar to AA sequence:frave:gene22329" /note="quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc354t24_C1" CDS join(38780529..38780681,38780913..38780975, 38781073..38781162,38781271..38781330,38781486..38781551, 38781647..38781712,38781789..38781864,38781948..38782012, 38782265..38782357,38782452..38782532,38782618..38782702, 38782791..38782834,38782918..38782955,38783056..38783115, 38783209..38783275,38783437..38783496,38783591..38783705, 38783798..38783916) /locus_tag="TCM_026515" /note="dbxref frave:gene22329; paralog of Thecc1EG026514t1" /codon_start=1 /product="Sugar transporter ERD6 14" /protein_id="EOY11276.1" /db_xref="TAIR:AT4G04750.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TV05" /translation="MGEEAATVTQSLLGRRGHGGGGQLQTVSSVTTTLVLSTFVAACI SFGFGCVMGYSSPTQSAIMEDLDLSIAEFSLFGSMLNIGSILGALVSGRTTDLLGRKC TMWVLNLFYIMGWFAIAFAKVPWLLDAGRLLLGFRNGIAGYLVPLYVAEITPKNLRGR FSGLVQTMGVIGLSMMYIIGPFFSWRILALIVIIPSPLQLPLLFFIPESPRWLANVGR EKEFEKALLSLRGEKVNIFEEATTIKDYTESLKCFSWGGILDLFQRKYAHPLIIGIGL MALQHSGGANAYAYYSGVIFVSAGLSKYIGLSTLAVVEILMSLLDTSLIDKFLHVEYA SAASSLEYHSFYSYHKQDYNWWGERTPILALISIWLYMGSYQVGMEGIPWIIVAEIFS INIKGAAGSISSLIGNLFSWIVSYNFNFLFQWSSAGTFFIFSAICGLNAIFAATMVPE TKGRTLEEIQASLTSI" gene 38785356..38789636 /locus_tag="TCM_046811" /note="dbxref CacaoGD:Thecc1EG046811" mRNA join(38785356..38785548,38786234..38786296, 38786580..38786669,38786762..38786821,38786940..38787005, 38787088..38787153,38787243..38787318,38787422..38787486, 38787743..38787835,38787955..38788035,38788122..38788206, 38788285..38788328,38788410..38788472,38788552..38788611, 38788726..38788779,38789149..38789208,38789288..38789402, 38789498..38789636) /locus_tag="TCM_046811" /product="Major facilitator superfamily protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046816t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s02850.1" /note="quality class is strong-expertchoice, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11468t2" mobile_element 38785584..38785648 /note="source:CACAO_M_S_E51240_F74_scaffold_4 2239 2309" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS join(38786792..38786821,38786940..38787005, 38787088..38787153,38787243..38787318,38787422..38787486, 38787743..38787835,38787955..38788035,38788122..38788206, 38788285..38788328,38788410..38788472,38788552..38788611, 38788726..38788779,38789149..38789208,38789288..38789402, 38789498..38789622) /locus_tag="TCM_046811" /note="paralog of Thecc1EG046816t1" /codon_start=1 /product="Major facilitator superfamily protein, putative" /protein_id="EOY11277.1" /db_xref="Phytozome:POPTR_0013s02850.1" /db_xref="TAIR:AT1G54730.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q3ECP7" /translation="MGWLAIAFSKEAWSLYLGRLSLGFGTAVFNYVGPVYVADITPKN LRGGFSSLVQAITICSISVAYFVGSITYWRTLALIDVIPCLIPVLCLFFVPESPRWLA KNGRDNEFKTSLQCLRGMSADISQEAAEIQDYTQNLQRSSEDKILDVFSSKYAHSVIV GVGLMLLQQLGGYKGFAYYANSIFYLAGFPSTIGIIAVAVTQIVMNILGILLIDSSGR RPLLMVSVVGTFFGCFLTGVSFLLQDLHSLEKITPFIALIGILMYVGFYSLGMSGIPW IIMSEIFPVNIKGSAGSLCNLVNWFCSWVVSYTFNFLLEWSSAGTFFIFSGISGLAII FILKLVPETKGRTLEEIQASMTRGAR" gene 38791059..38793052 /locus_tag="TCM_046812" /note="dbxref CacaoGD:Thecc1EG046812" mRNA join(38791059..38791204,38791591..38791651, 38791757..38793052) /locus_tag="TCM_046812" /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Sb07g007630.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026734t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s02630.1" /note="quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; inference alignment:Newbler:10:TSA:cgbaL_g00104t00011; inference alignment:Newbler:10:TSA:cgbaL_g00104t00009" gene <38791266..38793925 /locus_tag="TCM_046813" /note="dbxref CacaoGD:Thecc1EG046813" mRNA join(<38791266..38791651,38791757..38791903, 38793604..38793925) /locus_tag="TCM_046813" /product="Pentatricopeptide repeat (PPR) superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Sb07g007630.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026736t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s14620.1" /note="quality class is strongpartial-expertchoice, express is strong, homology is paralog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11470t1" CDS join(<38791267..38791651,38791757..38791903, 38793604..38793722) /locus_tag="TCM_046813" /note="paralog of Thecc1EG026736t1" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein" /protein_id="EOY11279.1" /db_xref="Phytozome:POPTR_0013s14620.1" /db_xref="TAIR:AT1G62680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MZK2" /translation="FSSFQSPFFSTSSSCFKKSRYGFHRIDDALDLFNHMLRTRPIPS IAEFTQLVSAIVRMKHYETAISLFGQMELIGIRHDVYSFSILLNCFCRLHRTDFGFSL LGKMLKLGIQPTTVTFTTLANGLCIEGYTGAASRLLRKMEQNNCLIDIVIYNTIIDSL CKDKLVPEALNLFSEMTDISCKYKGLSWKPLQPGELVLFLGCFLHFQLLTPTELCW" CDS 38791792..38792982 /locus_tag="TCM_046812" /note="paralog of Thecc1EG026734t1" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative" /protein_id="EOY11278.1" /db_xref="Phytozome:POPTR_0016s02630.1" /db_xref="TAIR:AT1G62930.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I897" /translation="MEQNNCLIDIVIYNTIIDSLCKDKLVPEALNLFSEMTGKGILPN VVTYSSLIHAMCNSGQWKEVTRLLTEMVANNCKLDVVSYNILVDAFCKEGRVSEACDI VEGMIQQIVDPNTITYNTLMDGYCLQGKMDEARKVFNLMITKGCVPDVYGYNILINGC CKDQKIDEAMALFHEMSRNGLVPDTVTYNALINGMCQLGRLSAARQLFEEMSACGLVP DAITYSTLLHGLCKHGHVDEALDSFHIIQNSGIEPYIVHYNILIDGLFQVGQLNFARK LFCALPVKGLRPDVYTCNIMIKGLCKEGLLKEAYELFRKMELNGCLQNSCSYNAIIKG FFQNNNVSRAMQILHEMVDKGFSADSSTATMLLDLLCRDGGDQSIFELLCRNCADDQN VNMK" mobile_element complement(38795049..38795133) /note="source:INTACT39F_F22_scaffold_1-int 3140 3220" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 38796303..38801877 /locus_tag="TCM_046814" /note="dbxref CacaoGD:Thecc1EG046814" mRNA join(38796303..38796493,38797517..38797579, 38797763..38797852,38797944..38798003,38798199..38798264, 38798360..38798425,38798501..38798576,38798668..38798732, 38798884..38798976,38799098..38799178,38799272..38799356, 38799475..38799518,38799601..38799663,38799745..38799804, 38799908..38799961,38800055..38800114,38800251..38800365, 38800454..38801877) /locus_tag="TCM_046814" /product="Major facilitator superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s02870.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046816t1" /inference="similar to AA sequence:frave:gene22342" /note="quality class is strong-expertchoice, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11462t8" CDS join(38796308..38796493,38797517..38797579, 38797763..38797852,38797944..38798003,38798199..38798264, 38798360..38798425,38798501..38798576,38798668..38798732, 38798884..38798976,38799098..38799178,38799272..38799356, 38799475..38799518,38799601..38799663,38799745..38799804, 38799908..38799961,38800055..38800114,38800251..38800365, 38800454..38800575) /locus_tag="TCM_046814" /note="dbxref frave:gene22342; paralog of Thecc1EG046816t1" /codon_start=1 /product="Major facilitator superfamily protein, putative" /protein_id="EOY11280.1" /db_xref="TAIR:AT1G54730.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MZS5" /translation="MERESMEEGLLTGYQPNEPNPSSNGTGNLAMPLPPSTASSLRLV LVFSTFVAVCGSFCYGCALGYSSPAESGIMEDLGLSVAAYSVFGSIMTVGGIVGAILS GKLADLIGRRRTMWFSEVFCTAGWLAIAFGQNALWLDIGRLLIGFGVAMLCYVVPVYI AEITPKSLRGSFASTNQLMTTSGFAIVFFTGTFISWRVLAMISAVPCVAQIIGLFFIP ESPRWLAKFGREKEFEAALKRLRGEDADISEEAADIRDYMETLQQHTEASFLELFQRR YANSLIVGVGLMLLQQLGGNSAMVFYAGSIFVEAGLSATIGLQVVAILQIPVAILGLF LMDRSGRRPLLMVSASGACFSCFLIGLSFCFKELPHLKALTPILALTGFLVVATAYTI GLGGIPWIIMSEIFPINVKAQAGSLVTLVNWSVSWIITYTFNFMMEWSSAGTFFFFSV VGGLTVLFAAKLVPETKGRTLEEIQASLTPFL" gene 38801808..38803240 /locus_tag="TCM_046815" /note="dbxref CacaoGD:Thecc1EG046815" mRNA join(38801808..38802115,38802202..38803240) /locus_tag="TCM_046815" /product="Pentatricopeptide repeat (PPR) superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Sb07g007630.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046812t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s04770.1" /note="quality class is strong-expertchoice, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.28 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00104t00009" CDS join(38801841..38802115,38802202..38802763) /locus_tag="TCM_046815" /note="paralog of Thecc1EG046812t1" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein" /protein_id="EOY11281.1" /db_xref="Phytozome:POPTR_0005s04770.1" /db_xref="TAIR:AT1G12620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MZJ2" /translation="MAIIRPGLQQSAQKALPGSANLANLLPTGNVFVLQTLIISFSNN GNCEMTHMYMTLALGAILLCLLASYLPALTASWAKMASFTTCTAKENENEFSWPGSRR DYLLTLLHGLCKHGHVHETLDIFRVIHNNGIEPYTVHYNILIDGLFQVGQLNVARKLC CALPVKGLHPSVYTWSIMIKGLCKEGLPNEAYELFKKMDLNGCLQDSCSYNVMIKGFF QNNDVSRAMQILHEIVDKGFSADSSTARMLLDILCRDGGDQSIFELLGRNCEDDQNLN MK" gene 38805884..38810002 /locus_tag="TCM_046816" /note="dbxref CacaoGD:Thecc1EG046816" mRNA join(38805884..38806147,38806328..38806390, 38806801..38806890,38806999..38807058,38807169..38807234, 38807467..38807532,38807612..38807687,38807770..38807834, 38808212..38808304,38808434..38808514,38808597..38808681, 38808777..38808820,38808900..38808962,38809053..38809112, 38809202..38809255,38809434..38809493,38809614..38809728, 38809832..38810002) /locus_tag="TCM_046816" /product="Major facilitator superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s02850.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046814t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s02850.1" /note="quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc2031t3" CDS join(38805959..38806147,38806328..38806390, 38806801..38806890,38806999..38807058,38807169..38807234, 38807467..38807532,38807612..38807687,38807770..38807834, 38808212..38808304,38808434..38808514,38808597..38808681, 38808777..38808820,38808900..38808962,38809053..38809112, 38809202..38809255,38809434..38809493,38809614..38809728, 38809832..38809962) /locus_tag="TCM_046816" /note="paralog of Thecc1EG046814t1" /codon_start=1 /product="Major facilitator superfamily protein" /protein_id="EOY11282.1" /db_xref="Phytozome:POPTR_0013s02850.1" /db_xref="TAIR:AT1G54730.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q3ECP7" /translation="MSREGMEEGGLSCSLIVKEKPQDGVGDCSGAGQGETRISSSATT TVVLSTFVAVCGSYVFGTAIGYSSPAQTGIVDDLGLSVAQYSLFGSILTIGAMIGAVM SGRIADYIGRKCTMGFSEVFCIVGWLAILFSKAAWWLDLGRLLVGYGMGLLSFVVPVY IAEVTPKNIRGGFTSVHQLMICCGVSITYLIGAFASWRTLALIGTIPCLMQLLGLFFI PESPRWLAKIGKWKECEAALQRLRGDNADISDEASEIRDYTEQLQQLSEASIFDLFQR KYAWSLMVGVGLMVLQQFGGVNGIAFYASAIFISAGFSGSVGMIAMVVVQIPMTALAV VLMDKSGRRPLLLVSAAGTCLGCFLVGLSFFLQDLQQWKEGTPILSLVGVLVYTGSFS LGMGGIPWVIMSEIFPINMKGSAGSLVTLVSWLGSWIISFAFNFLLKWSSAGTFFIFA SICGLTVLFVAKLVPETKGRTLEEIQASINPVSLER" gene 38811708..38812700 /locus_tag="TCM_026517" /note="dbxref CacaoGD:Thecc1EG026517" mRNA 38811708..38812700 /locus_tag="TCM_026517" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s02820.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s02820.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc5990t1" CDS 38811749..38812414 /locus_tag="TCM_026517" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11283.1" /db_xref="Phytozome:POPTR_0013s02820.1" /db_xref="TAIR:AT5G27370.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I7Z8" /translation="MVLPKVNLAQSAHKALPGSANLANLLPTGTVFAFQAIVPSFSNN GRCEAAHKYMTLGVIILCSLACFLSSFTDSFVGEDGKLYYGIATYNGLYVFNDDNDDA LDLEKDSANEMLKKYRLTAKDFVHACCSLTLFLVIACSSFDVQRCYFPNPGPNGDALM TNLPLAAGILASGLFMLFPTKRRGIGYADRLESDHGDKKEEKESLKKGDKELLPRSKT TPN" mobile_element complement(38812654..38812751) /note="source:scaffold_4_CACTA_0506 2691 2788" /mobile_element_type="transposon:TIR/CACTA" gene 38816887..38818227 /locus_tag="TCM_026518" /note="dbxref CacaoGD:Thecc1EG026518" mRNA 38816887..38818227 /locus_tag="TCM_026518" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30128.m008721" /inference="similar to AA sequence:ricco:30128.m008721" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.54 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00280t00002" CDS 38817083..38818015 /locus_tag="TCM_026518" /note="dbxref ricco:30128.m008721" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11284.1" /db_xref="TAIR:AT1G54740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MZS1" /translation="MIMPYDYSRFMMKVFCRKSVHHRFVLGLSSSSSGANVSPPPPPP SKCGLGLIANDTPRVPNVIESSSVVRPVSTPTKKKDPGGIGFIDDIGGGVDGLMSCTE SLGFESCDERRVDDDDDDNSGDKKKDGDQRVEVCDGKRSVMMTRDAWRRRRRSEEKRE RQSKKFPPPLSSLNQNGQPCFYLKPVRTNGRLELTEVRIERPEILRAVRQNGRLRLHL VSSDVCSRINEEEEEETKQEEQEQELHLQEEEEEEEVKLQEEETKVEELWKYRVNGEG FRRCHELVMTHHHHHDYHHHHSLHVWRQPCVTTR" gene complement(38818681..38823365) /locus_tag="TCM_026519" /note="dbxref CacaoGD:Thecc1EG026519" mRNA complement(join(38818681..38819377,38819517..38819697, 38819779..38819851,38820550..38820653,38820822..38820883, 38820975..38821042,38821557..38822403,38822497..38822703, 38822983..38823365)) /locus_tag="TCM_026519" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:28128.m000161" /inference="similar to AA sequence:ricco:28128.m000161" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc377t9" mRNA complement(join(38818786..38819106,38819238..38819377, 38819517..38819697,38819779..38819851,38820550..38820653, 38820822..38820883,38820975..38821042,38821557..38822403, 38822497..38822703,38822983..38823230)) /locus_tag="TCM_026519" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:28128.m000161" /inference="similar to AA sequence:ricco:28128.m000161" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11348t3; alternateUTRof:Thecc1EG026519t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc377t9" CDS complement(join(38819292..38819377,38819517..38819697, 38819779..38819851,38820550..38820653,38820822..38820883, 38820975..38821042,38821557..38822403,38822497..38822695)) /locus_tag="TCM_026519" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:28128.m000161" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY11285.1" /db_xref="TAIR:AT1G31870.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C6S8" /translation="MATSSSLKEYLKRYESKNEEEEQKKKRKKKKAKAKPESSGVFVV DEDPVWQKPVNLEEDNDGNDSPDEKPLVDEDIEVKRMKKLEQIRLTRGLNSIAEDGSG WVSLSPKRTNTLDPNSDVSPPRRQRARNDTPSPEPGLRHSNSEREIEDLSPLRQPRSP GLKSDLSPPRRSRVQNDTPSAREDADLSPPRRRPSRTDLPEPLVKAAKEGSDLSPPRK RRVRNDTPSPEPVLNQSDSDLSPPRKRRARNDSPSPERRMKPTRKDTDLLPLRKRSRR HHTPSPEPDMSPPRRSRPQTSEVVNDSDLSPPRKHRKESTGPASLKEQPKTGLISGSE IREEISKTKKDDWLRFKEMDPSISGRGAEPVYRDKTKGERISKEEFLKSKRKGEDKPK EKELEWGKGLAQKRETEARLQELEREKDKPFARNRDDPELDNMLKDRIRWGDPMAHLV KKKHSVPVLRDLGDAEKMKESGFIIPQDIPAHSWIVRKLDAAPNRYGIRPGRHWDGVD RSNGFEKKMFTKLNEKRATEREAYLWSVSDM" CDS complement(join(38819292..38819377,38819517..38819697, 38819779..38819851,38820550..38820653,38820822..38820883, 38820975..38821042,38821557..38822403,38822497..38822695)) /locus_tag="TCM_026519" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:28128.m000161" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY11286.1" /db_xref="TAIR:AT1G31870.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C6S8" /translation="MATSSSLKEYLKRYESKNEEEEQKKKRKKKKAKAKPESSGVFVV DEDPVWQKPVNLEEDNDGNDSPDEKPLVDEDIEVKRMKKLEQIRLTRGLNSIAEDGSG WVSLSPKRTNTLDPNSDVSPPRRQRARNDTPSPEPGLRHSNSEREIEDLSPLRQPRSP GLKSDLSPPRRSRVQNDTPSAREDADLSPPRRRPSRTDLPEPLVKAAKEGSDLSPPRK RRVRNDTPSPEPVLNQSDSDLSPPRKRRARNDSPSPERRMKPTRKDTDLLPLRKRSRR HHTPSPEPDMSPPRRSRPQTSEVVNDSDLSPPRKHRKESTGPASLKEQPKTGLISGSE IREEISKTKKDDWLRFKEMDPSISGRGAEPVYRDKTKGERISKEEFLKSKRKGEDKPK EKELEWGKGLAQKRETEARLQELEREKDKPFARNRDDPELDNMLKDRIRWGDPMAHLV KKKHSVPVLRDLGDAEKMKESGFIIPQDIPAHSWIVRKLDAAPNRYGIRPGRHWDGVD RSNGFEKKMFTKLNEKRATEREAYLWSVSDM" gene complement(38823413..38838652) /locus_tag="TCM_026520" /note="dbxref CacaoGD:Thecc1EG026520" mRNA complement(join(38823413..38824241,38824377..38824521, 38824613..38824754,38824857..38825360,38825488..38825646, 38825794..38826189,38826673..38829155,38829542..38831065, 38831253..38831486,38831660..38831833,38831925..38832053, 38832465..38832642,38832729..38832944,38833302..38833386, 38833679..38833794,38833931..38834117,38834212..38834368, 38834976..38835133,38835212..38835371,38835912..38836008, 38836177..38836308,38838271..38838652)) /locus_tag="TCM_026520" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s03990.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004478t1" /inference="similar to AA sequence:Phytozome:GSVIVT01022038001" /note="quality class is medium, express is weak, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.23 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc2210t3" mobile_element 38823494..38823625 /note="source:scaffold_4_CACTA_0506 2500 2634" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(38824106..38824241,38824377..38824521, 38824613..38824754,38824857..38825360,38825488..38825646, 38825794..38826189,38826673..38829155,38829542..38831065, 38831253..38831486,38831660..38831833,38831925..38832053, 38832465..38832642,38832729..38832944,38833302..38833386, 38833679..38833794,38833931..38834117,38834212..38834368, 38834976..38835133,38835212..38835371,38835912..38836008, 38836177..38836188)) /locus_tag="TCM_026520" /note="paralog of Thecc1EG004478t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11287.1" /db_xref="Phytozome:GSVIVT01022038001" /db_xref="TAIR:AT2G48060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4IN58" /translation="MFPSYAAPKIGKQSSSLFLSSIVNHDNFVCKSLQHEGFRFQRQS PLSWYTLIFSLLTVLSHAIFHIVWVMKEDQWSISDAQWARLIGFLRDQSWTFPSVTYF LVVQVLAAFVALYEIYGSRYGMDPKRVSFWGHLYSFILHIGSHLRVLCCLLLPAVQLV VGISHPSWASLPFFICSSIGLVDWSLTSNFLGLFRSWRYLLLYAGLNIILLYVYQLPM EFSGIFQWLADFIGLYKISAKSEWSEVCSGLSLLLFYIILSWIRCDLIEMDFIMSTRA SSLTEQLLPSKHSFFIRESRSGVRHTNILLRRPILRTFGINFFTYGFPISLLALSFWS FHFASLCAFGLLAYVGYVLYVFPSMYHLHRLNGLLLVFILLWAVSTYIFNIAFTVLNK EEWQDMEIWETIGLWHYPIPGFYLLAQFSLGVLVALSNLVNNSVFLYLSDRDGPSSSD DSTLDEREETNVLIVATIVWGLRKTSRALALLLLFLIALKPGLFHALYMAFFLIFLLS HTVGRKIRQCLLLLCEAHFTLLYALQLNLLSTAMEKKDSIAVRILSQLGSFTHANSGD LLKIAVLACFSAIHNHGFEMLLSFSAIVQHTPWPPIGFSILRAGLLKSVILSVYTRAS GESQETNFSHERIIGSYLNAIGEKFLSLYRSCGTYIVLLTILLTVYLVTPNYSSFGYL FFLLLWMTGRQLAGKTVKHLWLPLKIYAVAVFLFIYGLCVFPWLRQWLSRMVDLSSAF GYNPEASMLKNIWESLAVLIVMQLYSYERRQSKYFKLRDDVPETGAFTFLKRLLIWHS EKILYLAIVYASLSPISAFGFSYLFGLVICSIAPKASHIPSQLFLVYSALLVMFEYPF QMWGYRAEMFPGQKHSSVSFFLGLQVYKPGFLGVESGLRGKVLVIVACIMQYNVSRWL EKMPRNFENGEWWKDPCALFMSSEIAPNKATIFTGERKGLDANPLLGKKYKARSHSWP SLKTSFSQGMDPIGGYKSKNQSNRCLQESSKDNHKWNRRQIHVLRKERLAMQKASLKI YLKFWIENMFSIFGLEINMIALLLASFAVLNAISLLYIASLAACVLLNRQFIRKVWPM FVFLFASVFTLEYLAIWLNLTSWKHLSPAKAEVLCNDCWRSSDLHFDYCKNCWLGIIV DDPRMLISYYAVFMFSCLKLRADRLSSLSEFQTYKQMMSHSKHASGLSDLSFETKVLW TFLDYLRLYSYCHLLDLVLALILITGTLEYDILHLGYLGFALVFFRIRLQILKKKNSI FKFLRIYNFALIVLSLAYQSPLVGDFCEGKCEMVDHISKVIGLYKYGFQIPSRFALVE IVIFMLVALQSYMFSSLEFDYVSNYLEAEQIGALVSEQEKRAAWKTAQLRHIRKSEEQ KRTRNSQVEKIKSEMLNLQIQLHSMSTTNCGNTFPKGKDNRQRNPSVNLNPAQTTPDK RDTGFKKKDRTLNLDLVFTHDTNESPRSERTGVLSAVDSRKQSTDLLFEITELKDTTN DNMFFNSDVRPQGISKSKRNPLISAVQLIGDGVSHVQSLGSIAVMNLVNFLNIEHGKP DLAEHSSDDEVYYEIENQDFGSEHIEQSHSIQSDSERNMSNVACLQIRIILHYIWDQM RSNNDVVCYCCFVLIFLWNFSLLSMVYLAALFLYALCVNTGPSNMFWVIILIYTEVCI LLQYLYQIIIQHCGMIFEARLLQELGFPALKIMSSFVISHWPLFLVYLFTLLQSAITA SDGEWAVATEFSFTKNNDYQEMAAYNFGFIERIKGLLLPIRNVMEVLIRNPYRYWKSL TQGAETPPYFVQLSMRVNLPPEECIQPETIESKMNKLLKIMHDRRCRENLNNYPASRV RVQSIERSPENVNVALAVFEVLYASPSRKSSFPQWQRSLTPAADVTSEILEAYHAGIF KEIGFPYMILSVIGGGKKDVDLYAYVFCADLVVFFLVAIFYQSVIKNNSEFLEVYQYE DQFPKEFVFILMVIFFLIVLDRIIYLCSFATGKVIFYLFTLVLFTYSITNYAWHMEPS DKHARKFALRAIYLMKLISLALQAIQIRFGIPHESNLYRQFLTSSISQTNFLGFRIYR ALPFLYELRCVLDWSCTTTSLTMYDWLKLEDIHGSLFLVKCDADLNRAKHQQGQRQTK MTKFCNGICLFFILICVIWAPILMYSSGNPTNIANPIREASVRIDIKTNSGRLTLFET TLCEKISWNEVKRHIDLDPQGYLDNYNEVDIQLICCQPDASNLWLVPPVVQARYIKSL GWSMNIVFSWQFTRDRPRGKEVVKHELLVADQDLPQSAEVMRVLNGTANSFRMFKIYP RYFRVTGSGDVRFLEQAVDLISGDLVLNRGNPEWWSFYDLGASDGTGCGEFAGPMAII VSEETPQGIIGDTLSKFSIWGLYITFVLAVGRFIRLQCSDLRMRIQFENLPSCDRLLA ICEDIYAARAEGELEVEEVLYWTLVSIYRSPHMLLEYTKPD" mobile_element 38837079..38837806 /note="source:INTACT687_F13_scaffold_3-int 1314 2053" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 38838753..38841723 /locus_tag="TCM_026521" /note="dbxref CacaoGD:Thecc1EG026521" mRNA join(38838753..38839554,38840618..38841723) /locus_tag="TCM_026521" /product="Phosphoglycerate mutase family protein isoform 1" /inference="alignment:exonerate- protein:2:frave:gene22313.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016313t1" /inference="similar to AA sequence:ricco:30128.m008723" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g10445t00001" mRNA join(38838797..38839518,38840618..38841378) /locus_tag="TCM_026521" /product="Phosphoglycerate mutase family protein isoform 2" /inference="alignment:exonerate- protein:2:frave:gene22313.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016313t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400049761" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc660t1; inference alignment:Newbler:10:TSA:cgbaP2_g10445t00001" CDS join(38839089..38839554,38840618..38841045) /locus_tag="TCM_026521" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30128.m008723; paralog of Thecc1EG016313t1" /codon_start=1 /product="Phosphoglycerate mutase family protein isoform 1" /protein_id="EOY11288.1" /db_xref="TAIR:AT3G05170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HU11" /translation="MQENNLNHHNCRLLPKRIILVRHGESDGNLDTSAYSTTPDHKIS LTEQGRAQARQAGSHLRDLISGHGSCSDWRVYFYVSPYERTLSTLREIGKSFSKKRVI GVREECRIREQDFGNFQVEGRMKVIKETREKFGRFFYRFPEGESAADVFDRVSSFLES LWRDIDLNRLHNDPSHDLNLIIISHGLAARVFLMKWFKWTVKQFELLNNLGNCEIRVM ELGHGGEYSLAIHHTDEELLEWGLSPEMIEDQKWRIHSDKASWNDHCSYYLNSFFDHQ LDSDEDVTKVDIDSDDDSRKN" CDS join(38839089..38839518,38840618..38841045) /locus_tag="TCM_026521" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG016313t1" /codon_start=1 /product="Phosphoglycerate mutase family protein isoform 2" /protein_id="EOY11289.1" /db_xref="Phytozome:PGSC0003DMP400049761" /db_xref="TAIR:AT3G05170.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HU11" /translation="MQENNLNHHNCRLLPKRIILVRHGESDGNLDTSAYSTTPDHKIS LTEQGRAQARQAGSHLRDLISGHGSCSDWRVYFYVSPYERTLSTLREIGKSFSKKRVI GVREECRIREQDFGNFQVEGRMKVIKETREKFGRFFYRFPEGFLESLWRDIDLNRLHN DPSHDLNLIIISHGLAARVFLMKWFKWTVKQFELLNNLGNCEIRVMELGHGGEYSLAI HHTDEELLEWGLSPEMIEDQKWRIHSDKASWNDHCSYYLNSFFDHQLDSDEDVTKVDI DSDDDSRKN" gene complement(38841725..38842595) /locus_tag="TCM_026522" /note="dbxref CacaoGD:Thecc1EG026522" mRNA complement(38841725..38842595) /locus_tag="TCM_026522" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30128.m008726" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Newbler:10:TSA:cgbaL_g05174t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc2425t1" CDS complement(38841914..38842525) /locus_tag="TCM_026522" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11290.1" /translation="MKYPTKMVQSFLGLCHRLYDFIIECLATYAMRSVTLGQSSHQAS AQETPFEVASLQDKVEPDPAHDHKKVAQEIPFEDASLLDKVEPDPAHDHKKVAQEIPF EDANLQDKVEPDPAHDHKMPAQEMGGHASVSSEPSKEKENEEEAATRAQAPKKMVSIN DKVEEMAASRKKSRKKKGTEKMGSFDQEIDEPKPLKSILKPGI" gene complement(38842940..38847402) /locus_tag="TCM_026523" /note="dbxref CacaoGD:Thecc1EG026523" mRNA complement(join(38842940..38843216,38843617..38843673, 38843958..38844026,38844501..38844602,38844724..38844792, 38845017..38845106,38845412..38845463,38846039..38846121, 38846350..38846430,38846543..38846646,38846777..38846817, 38847140..38847402)) /locus_tag="TCM_026523" /product="Mitochondrial inner membrane translocase complex, subunit Tim44-related protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s02770.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s02770.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g02127t00002" CDS complement(join(38843130..38843216,38843617..38843673, 38843958..38844026,38844501..38844602,38844724..38844792, 38845017..38845106,38845412..38845463,38846039..38846121, 38846350..38846430,38846543..38846646,38846777..38846817, 38847140..38847225)) /locus_tag="TCM_026523" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Mitochondrial inner membrane translocase complex, subunit Tim44-related protein isoform 1" /protein_id="EOY11291.1" /db_xref="Phytozome:POPTR_0013s02770.1" /db_xref="TAIR:AT5G27395.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GXP7" /translation="MKRMALLRRFNTIRSLYQTFELRESSSFLLRSSRSYITGSSNVP QFYSHGASSCLYKTDTNALPWTCRSAMTLRSTMAAEFLIFLNDKKSVSTQAKAPAQAR QMGALKVSMTSPGFVYEPYAPGKPISFWKRYFTRSGWRRTKDDIKSELKSAYAIAKLR RSGYSKNQFYKEAVELFKEINTLMANGDKTTLRKVVTENMFSALKNEIKKRESVWSQV YWEMVEPIVKIRTLRARLIGVDKNDINKAFIQLTLEFLSKQKFEAYDSKGAVVAGDRT KEVLVRDIWVFEKSLFHPGAYWRLCGRIKV" mRNA complement(join(38843193..38843216,38843617..38843673, 38843958..38844602,38844724..38844792,38845017..38845106, 38845412..38845463,38846039..38846121,38846350..38846430, 38846543..38846646,38846777..38846817,38847140..38847279)) /locus_tag="TCM_026523" /product="Mitochondrial inner membrane translocase complex isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s02770.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s02770.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1828t3; inference alignment:Newbler:10:TSA:cgbaP2_g02127t00002" CDS complement(join(38844285..38844602,38844724..38844792, 38845017..38845106,38845412..38845463,38846039..38846121, 38846350..38846430,38846543..38846646,38846777..38846817, 38847140..38847225)) /locus_tag="TCM_026523" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Mitochondrial inner membrane translocase complex isoform 2" /protein_id="EOY11292.1" /db_xref="Phytozome:POPTR_0013s02770.1" /db_xref="TAIR:AT5G27395.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RF13" /translation="MKRMALLRRFNTIRSLYQTFELRESSSFLLRSSRSYITGSSNVP QFYSHGASSCLYKTDTNALPWTCRSAMTLRSTMAAEFLIFLNDKKSVSTQAKAPAQAR QMGALKVSMTSPGFVYEPYAPGKPISFWKRYFTRSGWRRTKDDIKSELKSAYAIAKLR RSGYSKNQFYKEAVELFKEINTLMANGDKTTLRKVVTENMFSALKNEIKKRESVWSQV YWEMVEPIVKIRTLRARLVSIQLIICLGVDLPHVVFEVLLFYELNRKTQIRMIRQKLL NHACNVCLVGRNVIWRFGLIIFNCHEPLTLQ" gene complement(38847460..38853972) /locus_tag="TCM_026524" /note="dbxref CacaoGD:Thecc1EG026524" mRNA complement(join(38847460..38848119,38848213..38848296, 38848377..38848439,38848524..38848662,38848784..38848885, 38849427..38849527,38849733..38849799,38849898..38849944, 38850449..38850643,38850726..38850772,38850871..38850930, 38851065..38851162,38851437..38851555,38851638..38852112, 38853898..38853972)) /locus_tag="TCM_026524" /product="Sodium/hydrogen exchanger 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000002001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021126t1" /inference="similar to AA sequence:Phytozome:GSVIVT01000002001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11288t2" CDS complement(join(38847778..38848119,38848213..38848296, 38848377..38848439,38848524..38848662,38848784..38848885, 38849427..38849527,38849733..38849799,38849898..38849944, 38850449..38850643,38850726..38850772,38850871..38850930, 38851065..38851162,38851437..38851555,38851638..38851817)) /locus_tag="TCM_026524" /note="paralog of Thecc1EG021126t1" /codon_start=1 /product="Sodium/hydrogen exchanger 1" /protein_id="EOY11293.1" /db_xref="Phytozome:GSVIVT01000002001" /db_xref="TAIR:AT3G05030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MZL2" /translation="MSTFDPMPHLSAVQNSTDFLSTSTIIALTVFFSLLCACIIIGHL LEENRWANESITALLVGLCAGAVVLLVSKGTSSQILVFSEDLFFLYLLPPIIFNAGFQ VKKKQFFKNFTIILMFGIFGTVISFCLISLGAILLFKRIGVTSLSTQDYLAVGAILSA TDSVCTLQVLSQDETPFLYSVVFGEGVVNDATSIVLFNSVQSIDFSNIDATISLKLLG TFLYLFFTSTILGIVAGLLSAFIIKTLYFGRHSTDREVALMMIMAYLSYMLAELLSLS GILTIFFCGIVMSHYTWHNVTESSRVTTKHAFATISFIAEIFIFLYVGMDALDIDKWK ASSASAGTSVAVSSTMFALVLVGRAAFVYPLANFTNCIRKRDSTKIEFRQQFIMWWAG LMRGAVTIALSYNQFSNSEDLSTHDSALMITSTIIVVLFSTVVFGSITKPLIEAVLLR HAKPNISDATDIPSLEDLRILFIENGEPSDLAENQPPPAVPKRSSLRLLMTHPTWTVH YLWRKFDDRFMRPVFGGRGFVPFVPGSPTGAADEPSARH" mobile_element 38849637..38849689 /note="source:CACAO_Mutator_E592_scaffold_3 3980 4032" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(38854592..38854670) /note="source:INTACT570_F260_scaffold_5-int 5316 5388" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(38854615..38855327) /locus_tag="TCM_026525" /note="dbxref CacaoGD:Thecc1EG026525" mRNA complement(38854615..38855327) /locus_tag="TCM_026525" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s14690.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026637t1" /inference="similar to AA sequence:Phytozome:Sb01g004740.1" /note="quality class is strong, express is none, homology is paralog strong, intron is none, protein is complete" CDS complement(38854774..38855220) /locus_tag="TCM_026525" /note="paralog of Thecc1EG026637t1" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein" /protein_id="EOY11294.1" /db_xref="Phytozome:Sb01g004740.1" /db_xref="TAIR:AT3G28610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HV41" /translation="MILNFDDEHKSKSKVTLSRFLNFIDGIWSACDGERIIVFTTNHV NKLDPALIRMRRMDMHIELSYCTLGGFKVLAKNYLKLDSHPLFEKIGNLFKVVNMTPD VSEHLLHGRVGRDPKACLESLIEALETVKEEKIEEEDIKTLETAEE" gene complement(38855177..38857182) /locus_tag="TCM_026526" /note="dbxref CacaoGD:Thecc1EG026526" mRNA complement(join(38855177..38855494,38855924..38856062, 38856625..38857182)) /locus_tag="TCM_026526" /product="AAA-ATPase 1, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s14690.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018258t1" /inference="similar to AA sequence:Phytozome:Glyma13g05010.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.51 coverage" CDS complement(join(38855217..38855494,38855924..38856062, 38856625..38856681)) /locus_tag="TCM_026526" /note="paralog of Thecc1EG018258t1" /codon_start=1 /product="AAA-ATPase 1, putative" /protein_id="EOY11295.1" /db_xref="Phytozome:Glyma13g05010.1" /db_xref="TAIR:AT5G40010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HV41" /translation="MVVTYLQASFQLKHSNSVAQERLKNYFFPSIRITFDEFTSGLYH RSDAYIAIEYTLAPNLLHEQPGLETRLSVIWSSTKIGKAWKRGYLLYGPPGTGKSTLI LVMSNLLSYDIHDLELITIKDNAYLKTLLINSSRKGIFVVEDIDCSFDITQKQEK" gene 38856523..38860539 /locus_tag="TCM_026527" /note="dbxref CacaoGD:Thecc1EG026527" mRNA join(38856523..38856572,38857727..38858339, 38858477..38859290,38859796..38860539) /locus_tag="TCM_026527" /product="Kinase superfamily protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026615t1" /inference="similar to AA sequence:ricco:30128.m008786" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11271t1" CDS join(38858313..38858339,38858477..38859290, 38859796..38859896) /locus_tag="TCM_026527" /note="dbxref ricco:30128.m008786; paralog of Thecc1EG026615t1" /codon_start=1 /product="Kinase superfamily protein, putative" /protein_id="EOY11296.1" /db_xref="TAIR:AT3G57750.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I7Q8" /translation="MKMKMKMKMIFVQDTGYKLYKGSLTDRPIFVKKYDSSWSSLAVN PYKDIAIGSQMSVHKNVLKFIGCYLETETPTIVYEFAGTKRLSTFISATNVQPLPWKW KLKIAIGLANPVAYLHTAFSRPVIHRGIKCLKIILDENNVPKLIDFGLCISIPEGQSH AKRAIIGKTGWWVPPEYWARGYITEKVDVYQFGLFLFELLSGQGLAYLPMDDTLDIGE LSFEKFIDAVDWRIKYEGIGQEQLLNFATLINRCTFYDEQKRPTMIEVGKELKQIDQS FTSPSLNGKVNHQEQQPRVNNQVLGISKIAWGQGNFL" gene complement(38861646..38862676) /locus_tag="TCM_026528" /note="dbxref CacaoGD:Thecc1EG026528" mRNA complement(join(38861646..38861875,38862051..38862074, 38862280..38862676)) /locus_tag="TCM_026528" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.67 coverage" CDS complement(join(38861866..38861875,38862051..38862074, 38862280..38862587)) /locus_tag="TCM_026528" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11297.1" /translation="MTGSEGKKSFPSKSASSKGASSMQSKKKWKTEPTSMNERGDPKS KRTKDNDTVVKTCSRNFSDFTRREDSYPNRHTAELCKKDQATRKCKTAAKDMAKGKKK MGKKSFTSEIE" mobile_element complement(38863401..38863584) /note="source:CACAO_on_SS_E42_scaffold_2 25203 25410" /mobile_element_type="transposon:TIR/Mutator" gene 38865117..38866691 /locus_tag="TCM_026529" /note="dbxref CacaoGD:Thecc1EG026529" mRNA join(38865117..38865555,38866221..38866691) /locus_tag="TCM_026529" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026637t1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.29 coverage" CDS join(38865206..38865555,38866221..38866542) /locus_tag="TCM_026529" /note="paralog of Thecc1EG026637t1" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein" /protein_id="EOY11298.1" /db_xref="TAIR:AT3G28610.1" /translation="MIMGRGIVGDIITSLILFYGLISQLVPDCFTECIELWQERLKNY FFPSIRIIFNEFNSSLCHRSIAYIAIEYYLSSKSVARVTKLKAESLKRKGPLLFSSDD YEDVEDEFEGVKVTCGERIIVFTTNHVDKLDPALIRRGRMDMHIELSYCTLGGFKVLA KNYLNLDSHPLFEKIGNLLEEVNMTPAEVSEHLICGRVGRDPKACLESLIEALETAKE KKINE" gene complement(38866693..38871288) /locus_tag="TCM_026530" /note="dbxref CacaoGD:Thecc1EG026530" mRNA complement(join(38866693..38867814,38867898..38868054, 38868563..38868651,38868936..38869972,38871178..38871288)) /locus_tag="TCM_026530" /product="Kinase superfamily protein" /inference="alignment:exonerate- protein:2:frave:gene25418.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026615t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400033301" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.11 coverage" mobile_element complement(38866832..38866975) /note="source:scaffold_4_CACTA_0482 6137 6245" /mobile_element_type="transposon:TIR/CACTA" CDS complement(join(38867348..38867814,38867898..38868054, 38868563..38868651,38868936..38869911)) /locus_tag="TCM_026530" /note="paralog of Thecc1EG026615t1" /codon_start=1 /product="Kinase superfamily protein" /protein_id="EOY11299.1" /db_xref="Phytozome:PGSC0003DMP400033301" /db_xref="TAIR:AT3G57750.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I7Q8" /translation="MFACFNVKRYEDNQTFFIKNGGRLLEELITFCNGKSNPIRHFSA KELLIATNNYDPRQIFVENFGYQLYKGSLNDRLIFVKKYGYLWGSEDNAYKDIAIGSQ MSVHKNVLKVTGCCLETEIPTTVYEFAGTKILSTCISTTNVEPLRWKCRLKIAIGIAN AIAYLHNAFSRPVIHRDINCSNIILDQNNVPKLIDFGLSVSIPEGKSDIEDPLTRRTL DVAPEYCVRGYITEKVDVFQFGLLLIELLSGYQTVLCTATRCSDQKHVEMLVNGVDSR IKNEGIDMKQLQDFATLILRCTSYDEEQRPTMIEVAKELRRIDQSFPSPSEAAREDCY GNKILHSLVGTLIWLKEGYGKILFMNLVEKCICEVHEGQPEPLTWKSRIRIAMDVATA VAYLHTALSRPIIHREGKSHVEDAISGITGYMAAEVWEGSKINEKADVYSFGRLLFEL LTGTNNASQYYAAEDAIVEEFVQSYVESNRLIEIVDQNISSEGINRDELVAFANIVPS CTKENPEDHPTITDVAKQLRQLHKASPCISAIYFTSISLIYTSYISLDSCSYIH" gene complement(38871461..38873340) /locus_tag="TCM_026531" /note="dbxref CacaoGD:Thecc1EG026531" mRNA complement(join(38871461..38872768,38873218..38873340)) /locus_tag="TCM_026531" /product="Kinase superfamily protein, putative" /inference="alignment:exonerate- protein:2:frave:gene25418.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026615t1" /inference="similar to AA sequence:ricco:30128.m008790" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00388t00002" CDS complement(38871772..38872458) /locus_tag="TCM_026531" /note="dbxref ricco:30128.m008790; paralog of Thecc1EG026615t1" /codon_start=1 /product="Kinase superfamily protein, putative" /protein_id="EOY11300.1" /db_xref="TAIR:AT1G16260.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TL84" /translation="MSVHKNVLKVIGCCLETELPITVYEFAGTKILSTCIFATNDEPL PWKCRLKIAIGIASAVAYLHTAFSRPVIHRDIKCSSIILDQNNVPKLIDFGLCISIPE GESHVEADVIVGRMGYLAPEYGGRGYLTEKADVYQFGILLFELLSGQRAAYFMMEHDI TDIGKLCFGKLSNFIDSRIKNERIDQVQLLDFATLSRRCISYEEEERPTMIEVAKELR RIDQRFPSPS" mobile_element complement(38873398..38876139) /note="source:CACAO_on_SS_E42_scaffold_2 19410 22121" /mobile_element_type="transposon:TIR/Mutator" gene 38873497..38876141 /locus_tag="TCM_026532" /note="dbxref CacaoGD:Thecc1EG026532" mRNA join(38873497..38873557,38873719..38873799, 38874917..38874970,38875786..38876141) /locus_tag="TCM_026532" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc7Loc2235t1_G2" CDS join(38873516..38873557,38873719..38873799, 38874917..38874949) /locus_tag="TCM_026532" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11301.1" /translation="MTLGVLIIKKIEKGIQSTDSQKGLISGKKKDRGEGKRLLIKATK RIFGFAT" gene complement(38877113..38878635) /locus_tag="TCM_026533" /note="dbxref CacaoGD:Thecc1EG026533" mRNA complement(join(38877113..38878053,38878145..38878635)) /locus_tag="TCM_026533" /product="Kinase superfamily protein, putative" /inference="alignment:exonerate-protein:2:frave:gene21869" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026615t1" /inference="similar to AA sequence:ricco:30128.m008787" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.38 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11292t1" CDS complement(38877491..38878048) /locus_tag="TCM_026533" /note="dbxref ricco:30128.m008787; paralog of Thecc1EG026615t1" /codon_start=1 /product="Kinase superfamily protein, putative" /protein_id="EOY11302.1" /db_xref="TAIR:AT3G57700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RF73" /translation="MIACLKVKRREDNQTFFTKNGGRLLEELITFCNGKSNPIRHFSA KELLRATNCYNTSQIFVEGRGYKLYKGSLKDRPIFVKKYDNHSLLGDFATKDIAIGSQ MSVHKNVLKVLGCCLETQIATIVYEFDDTKSLSTFISATNVEPLPWKCRLKIATGVAN AVAYLHNAFSRPVIHREIKCSNIIL" gene complement(38880647..38884571) /locus_tag="TCM_026534" /note="dbxref CacaoGD:Thecc1EG026534" mRNA complement(join(38880647..38881090,38881539..38881628, 38881980..38882057,38882150..38882353,38882434..38882481, 38882583..38882771,38883242..38883341,38883459..38883624, 38884486..38884571)) /locus_tag="TCM_026534" /product="Cullin 1, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene22512" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021183t2" /inference="similar to AA sequence:frave:gene22512" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11350t1" mRNA complement(join(38880868..38881092,38882146..38882353, 38882434..38882481,38882583..38882771,38883242..38883341, 38883459..38883775)) /locus_tag="TCM_026534" /product="Plastid CUL1, putative isoform 4" /inference="alignment:exonerate-protein:2:frave:gene22512" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004565t1" /inference="similar to AA sequence:frave:gene22512" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc567t4_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11350t1" CDS complement(join(38880983..38881090,38881539..38881628, 38881980..38882057,38882150..38882353,38882434..38882481, 38882583..38882771,38883242..38883341,38883459..38883589)) /locus_tag="TCM_026534" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene22512; paralog of Thecc1EG021183t2" /codon_start=1 /product="Cullin 1, putative isoform 1" /protein_id="EOY11303.1" /db_xref="TAIR:AT4G02570.4" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RF83" /translation="MILKYIPLDEGMMIMDEAIVKAKKIIEGYPETKFSGEEYQRFYE CVYFMCTYHSSNEKTMQLYEKFRNSLEESIFSTILPTLINKQGANLLRELVVMWSNYK LMARWLCRFFEYLDRFFIPQHIELESLNGISFSCFRDLVFKKLYCRFIDATLTLINQE RDGLQIDCILLKNVLDIFVEISDYSGVNYYKDFEQIMLTEISGYYSRLASEWLLFDSS AEYVHKVFWCLNREKQRASQYLHPDSEAKLMQVVRYQLLDQIANKLMEKKQAENSGLV TDYQEILSKCAGMTLQEGSSSTSPEEWLSKLMASSAHIC" CDS complement(join(38881091..38881092,38882146..38882353, 38882434..38882481,38882583..38882771,38883242..38883341, 38883459..38883589)) /locus_tag="TCM_026534" /note="encoded by transcript variant 4; alternatively spliced; dbxref frave:gene22512; paralog of Thecc1EG004565t1" /codon_start=1 /product="Plastid CUL1, putative isoform 4" /protein_id="EOY11306.1" /db_xref="TAIR:AT4G02570.4" /db_xref="UniProtKB/TrEMBL:UniRef50_D8V3L8" /translation="MILKYIPLDEGMMIMDEAIVKAKKIIEGYPETKFSGEEYQRFYE CVYFMCTYHSSNEKTMQLYEKFRNSLEESIFSTILPTLINKQGANLLRELVVMWSNYK LMARWLCRFFEYLDRFFIPQHIELESLNGISFSCFRDLVFKKLYCRFIDATLTLINQE RDGLQIDCILLKNVLDIFVEISDYSGVNYYKDFEQIMLTEISGYYSRLASEWLLFDSS AEYVHKV" mRNA complement(join(<38881604..38881628,38881980..38882057, 38882150..38882353,38882434..38882481,38882583..38882771, 38883242..38883341,38883459..38883801)) /locus_tag="TCM_026534" /product="Plastid CUL1, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene22512" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021183t1" /inference="similar to AA sequence:frave:gene22512" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc634t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11350t1" mRNA complement(join(<38881604..38881628,38881980..38882057, 38882150..38882353,38882434..38882481,38882583..38882771, 38883242..38883801)) /locus_tag="TCM_026534" /product="Cullin 1, putative isoform 3" /inference="alignment:exonerate-protein:2:frave:gene22512" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021183t3" /inference="similar to AA sequence:Phytozome:GSVIVT01017738001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc634t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11350t1" CDS complement(join(<38881605..38881628,38881980..38882057, 38882150..38882353,38882434..38882481,38882583..38882771, 38883242..38883341,38883459..38883589)) /locus_tag="TCM_026534" /note="encoded by transcript variant 2; alternatively spliced; dbxref frave:gene22512; paralog of Thecc1EG021183t1" /codon_start=1 /product="Plastid CUL1, putative isoform 2" /protein_id="EOY11304.1" /db_xref="TAIR:AT4G02570.4" /db_xref="UniProtKB/TrEMBL:UniRef50_D8V3L8" /translation="MILKYIPLDEGMMIMDEAIVKAKKIIEGYPETKFSGEEYQRFYE CVYFMCTYHSSNEKTMQLYEKFRNSLEESIFSTILPTLINKQGANLLRELVVMWSNYK LMARWLCRFFEYLDRFFIPQHIELESLNGISFSCFRDLVFKKLYCRFIDATLTLINQE RDGLQIDCILLKNVLDIFVEISDYSGVNYYKDFEQIMLTEISGYYSRLASEWLLFDSS AEYVHKVFWCLNREKQRASQYLHPDSEAKLMQVVRYQLLD" CDS complement(join(<38881605..38881628,38881980..38882057, 38882150..38882353,38882434..38882481,38882583..38882771, 38883242..38883328)) /locus_tag="TCM_026534" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG021183t3" /codon_start=1 /product="Cullin 1, putative isoform 3" /protein_id="EOY11305.1" /db_xref="Phytozome:GSVIVT01017738001" /db_xref="TAIR:AT4G02570.4" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I7Q7" /translation="MCTYHSSNEKTMQLYEKFRNSLEESIFSTILPTLINKQGANLLR ELVVMWSNYKLMARWLCRFFEYLDRFFIPQHIELESLNGISFSCFRDLVFKKLYCRFI DATLTLINQERDGLQIDCILLKNVLDIFVEISDYSGVNYYKDFEQIMLTEISGYYSRL ASEWLLFDSSAEYVHKVFWCLNREKQRASQYLHPDSEAKLMQVVRYQLLD" mobile_element complement(38883743..38884173) /note="source:scaffold_1_CACTA_0009 13829 14260" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(38884165..38884216) /note="source:scaffold_1_CACTA_0009 1578 1629" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(38884857..38884908) /note="source:CACAO_MITE_S250_scaffold_10 882 933" /mobile_element_type="transposon:TIR/MITE" gene 38886167..38887116 /locus_tag="TCM_026535" /note="dbxref CacaoGD:Thecc1EG026535" mRNA join(38886167..38886547,38886656..38887116) /locus_tag="TCM_026535" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.96 coverage" CDS 38886697..38886960 /locus_tag="TCM_026535" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11307.1" /translation="MELSCLRAPTSVQVPTYCWFRLPEYLVVRCFYRNTNFENIDNLE IGCEILTISNYGTNNSIAARVLRGGSWKNSALISSHGWDSSIG" gene complement(38887118..38892202) /locus_tag="TCM_026536" /note="dbxref CacaoGD:Thecc1EG026536" mRNA complement(join(38887118..38888794,38889320..38889418, 38889644..38889996,38890183..38890300,38891180..38892202)) /locus_tag="TCM_026536" /product="Zinc finger family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000088001" /inference="similar to AA sequence:ricco:30128.m008782" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11354t1" CDS complement(join(38887543..38888794,38889320..38889418, 38889644..38889996,38890183..38890300,38891180..38892009)) /locus_tag="TCM_026536" /note="dbxref ricco:30128.m008782" /codon_start=1 /product="Zinc finger family protein, putative" /protein_id="EOY11308.1" /db_xref="TAIR:AT1G55040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MZV5" /translation="MAQSPFTLLLLKRLSLSSKIPLKLNNFSPSPIFTTTTSKPFSSA SPQPAVSTTQDPPKPTSLSARMSFVFDQIDQIERQRQQQSVQYDDTLQRIRAWRQSKK EAQATQQQFQPKEQSPESGIAKNDASTNDFTLSDSPELTESRNGDALRRIRAWRESKH GENKEISEGETAKNEANSSVFSTDPVAELGELERQKGNEVELVHPWPEWIELMERLVQ QNYFDHKRRDEGKMVEELGFDLSNVVEEVKDNAGIDFKDFRTVQTACLNFGKDRFDIL RSLSRQDVQNLVGFGCPSADKKVVFSAKLLRKHVHLDEGDVCSSCSLRNSCERAYLLT NKEDEARTIDVMRVLLTYGFHSMNGSVFNESVIKQKSVKNVVRKLLHEVVKLSAVPID PNLPPPVIKKPPPKVKQPPPPPKKRVGRDDIEMKKGDWLCPKCDFMNFAKNTVCLQCD AKRPKRQLLPGEWECPECNFLNYRRNMACFHCDCKRPPDAFMESKVQEMQPGPRTRLE KVAHRPEVSNAWNFDFDDDESDGADVAAFEYADSPVMSEASPLDNQTHGGKFRGLEDD FDTAGRASRVHERKYSDIDSSKHGMGFDDFDDEDDIDSYEIDTQRNNPRRKASYSDKE VFSEPEDIKGSNNSSPARRGTRFPSHSNSSKHMHKNVALSGSEDDELDFDSDEELSVH PKWKSSHVADSKHRGRGASKDLSFGSDEDLDLDSDGDDGFGNFRSKGRRQEKRSYGRG NFQRGGSSDFEGGSVSDLEGPHSRRNGSRGSKTGSGRRGNNVRDPGDYNFRKDSRSWS NTKMDDGRNYPGDHFDKSYRGSRGDKGRLRGDDYSRQRKNNNMQKFKGPRQYGVFENR RRGRSHEYSIGSDDPSEFRNSRRVIER" gene complement(38892249..38904862) /locus_tag="TCM_026537" /note="dbxref CacaoGD:Thecc1EG026537" mRNA complement(join(38892249..38892812,38892931..38893545, 38893903..38894206,38894390..38894595,38895009..38895116, 38895238..38895513,38895733..38895879,38896316..38896907, 38897134..38897276,38897772..38898121,38898194..38898244, 38898332..38898559,38898836..38900390,38901195..38901596, 38901685..38901776,38901859..38902030,38902162..38902317, 38902886..38902954,38903506..38903548,38903671..38903783, 38903895..38903944,38904043..38904109,38904366..38904448, 38904610..38904862)) /locus_tag="TCM_026537" /product="Recovery protein 3 isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT1G67500.2" /inference="similar to AA sequence:Phytozome:POPTR_0013s02320.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1552t8" mRNA complement(join(38892456..38892812,38892931..38893545, 38893903..38894206,38894390..38894595,38895009..38895116, 38895238..38895513,38895733..38895879,38896316..38896907, 38897134..38897276,38897772..38898121,38898194..38898244, 38898332..38898559,38898836..38900358,38901213..38901596, 38901685..38901776,38901859..38902026,38902162..38902257)) /locus_tag="TCM_026537" /product="Recovery protein 3 isoform 3" /inference="alignment:exonerate- protein:2:TAIR:AT1G67500.2" /inference="similar to AA sequence:Phytozome:POPTR_0013s02320.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1649t2; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1649t8; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1552t8" mRNA complement(join(38892456..38892812,38892931..38893545, 38893903..38894206,38894390..38894595,38895009..38895116, 38895238..38895513,38895733..38895879,38896316..38896907, 38897134..38897276,38897772..38898121,38898194..38898244, 38898332..38898559,38898836..38900358,38901213..38901596, 38901685..38901776,38901859..38902030,38902162..38902257)) /locus_tag="TCM_026537" /product="Recovery protein 3 isoform 3" /inference="alignment:exonerate- protein:2:TAIR:AT1G67500.2" /inference="similar to AA sequence:Phytozome:POPTR_0013s02320.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1649t8; alternateUTRof:Thecc1EG026537t3; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1649t8; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1552t8" CDS complement(join(38892639..38892812,38892931..38893545, 38893903..38894206,38894390..38894595,38895009..38895116, 38895238..38895513,38895733..38895879,38896316..38896907, 38897134..38897276,38897772..38898121,38898194..38898244, 38898332..38898559,38898836..38900390,38901195..38901596, 38901685..38901776,38901859..38902030,38902162..38902317, 38902886..38902954,38903506..38903548,38903671..38903783, 38903895..38903944,38904043..38904109,38904366..38904448, 38904610..38904721)) /locus_tag="TCM_026537" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Recovery protein 3 isoform 1" /protein_id="EOY11309.1" /db_xref="Phytozome:POPTR_0013s02320.1" /db_xref="TAIR:AT1G67500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O64795" /translation="MSNSQPDSNVFSVRIVSIDHYMARPISGYDTCYSSFQGERVNEV PVIRIYGSTPAGQKTCLHIHRALPYLYVPLVDILPQGSHTHQEDHACADALALALEKA LKLKVGAGSKRQHVHGCSLVRAKKFYGYRSSEELFVKIYLYYPHDVSRAANLLLAGAV LDKSSQPHESHIPFILQFLVDYNLYGMGHLHLSRMKFRNPIPDLSHPRKINNCGQHGQ KMDDLTLKAAGFQADSSRDVCINSPVWISSTIPGEWMWHVSAELDVSSDQDICHVKRQ SLCELEGDATLDDILNQQFKIYTSLSQTCSDVKMVQSLIPIWEEECERTGMHEMALPS YPDRPLSEDVLKALSLGVGFEDELMKLCSKVEETLSHNELGFEQSVIPSANEENLVGP THINLNHTVPQALSCSKEQSLLGSLSQHCKPCEKEMNAASSEKKDVCPELLSVGEILS SQTATDTEALGLLAWLANSHAADDINSDDELVRETILTPLLPATTIDKVLEKASIDYE SESQKECQDILDSVGDLIEFDGLKERNSHSYDHIQISSGKHIPQTDGSSDDLGLSPSA GSVANSSKADMKTELKRSSQDTSKTFSTKRKRKKLLWGSLPLSVTGKGKDNSDSVSFN ITEACADEIKECLGTSFSAENDLGKASDPLNKNAHASDDKQEAGILVECTVRDLMRRK RSRRIEPADCGSVRSENVHLKMEKGKDSFFCPKQLNFHGSHNELDKKGPGSLNHSPSL ANEQKEFPEAVGFKPTHSDSVYCTLPQLSGISNPAQANTGHPEQMGKKLVLNFYPKKH DSAISIGHCETYKGKEFDFRVTSAESRNSDAHTSKAHKEIDSPDERLQQTDTNGSWCL SASPRTHKMLGMDGYIHETYYEGEISLSADKPVGIDATTDKSYPQNEDCGGGKQGCIT GLVVDVEAKPVELIGMTFCKKPPTADWNDGATENVTHLPTTQHSPSLFNEENCQGTSG RALDEVLPFFSRGCEEEKEVQNKCLGNNNSNFHQEAALGVPIHYQNDGSFLYLLTPVS SPPSPDSVYRWLSCDEEGSHRQSNAVSAESPSLTGSTECLIASENSSPVNCNEALTKS SSKYHMTSMLEQGHPEKNMVLGSEVKSCSNESRTPCQSEENIRTVNACADGSQDMSQI SGPDGKSRPTPLSQIGFRDPASVGAGQQLTLLSLEVHTESRGDLRPDPRFDAVNVVAL AIQNDNDSETEVHVLLYSKTGFYQRNLDGIFGLKVFVFSEEKHLFGQFMKILCSLDPD ILMGWDVQGGSLGFLAERAAYLGIGLLNKISRTPSETKIKAEETNISQKGSQEELLSK PLIADSIVMEDAIIEDEWGRTHASGVHVGGRIVLNVWRLMRGEVKLNMYTVEAVAESV LRQKIPSIPYKVLTKWFSSGPAQARYRCVEYVVERAKLNLQIMNKLDMINRTSELARV FGIDFFSVLSRGSQFRVESMFLRLAHTQNYLAISPGNQQVASQPAMECLPLVMEPESG FYADPVVVLDFQSLYPSMIIAYNLCFCTCLGKIANSKVNTLGVSSYAPDPNVLRNLKD QVLLTPNGVMYVPSKVRKGVLPRLLEEILSTRIMVKQAMKKLTPSQQVLQRIFNARQL ALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISYVNAHEKWRANVIYG DTDSMFVLLKGRTVKESFKIGHEIASAITAMNPNPVTLKMEKVYHPCFLLTKKRYVGY SYESPDQVKPVFDAKGIETVRRDTCGAVAKTMEQSLRLFFEHQDIPKVKAYLHRQWTR ILSGRVSLQDFVFAKEVRLGTYSTKVGSLPPAAIVATKAMRADPRAEPRYAERVPYVV IHGEPGARLVDMVVDPLELLAINSPYRLNDLYYINKQIIPALQRVFGLVGADLNRWFS EMPRLAREAFGKCGVHALNPQRTRIDYYYLSKHCILCGDLVQASAHLCGKCSENKTAA ATAIVGRTSKSEREMQHLVAICRHCGGGDWLVESGVKCNSLACSVFYERRKVQKELQG LSAVATDKGLYPKCMVEWF" CDS complement(join(38892639..38892812,38892931..38893545, 38893903..38894206,38894390..38894595,38895009..38895116, 38895238..38895513,38895733..38895879,38896316..38896907, 38897134..38897276,38897772..38898121,38898194..38898244, 38898332..38898559,38898836..38900358,38901213..38901268)) /locus_tag="TCM_026537" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Recovery protein 3 isoform 3" /protein_id="EOY11311.1" /db_xref="Phytozome:POPTR_0013s02320.1" /db_xref="TAIR:AT1G67500.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HTM5" /translation="MLPHLKKKMFVLNFCLLVKWLANSHAADDINSDDELVRETILTP LLPATTIDKVLEKASIDYESESQKECQDILDSVGDLIEFDGLKERNSHSYDHIQISSG KHIPQTDGSSDDLGLSPSAGSVANSSKADMKTELKRSSQDTSKTFSTKRKRKKLLWGS LPLSVTGKGKDNSDSVSFNITEACADEIKECLGTSFSAENDLGKASDPLNKNAHASDD KQEAGILVECTVRDLMRRKRSRRIEPADCGSVRSENVHLKMEKGKDSFFCPKQLNFHG SHNELDKKGPGSLNHSPSLANEQKEFPEAVGFKPTHSDSVYCTLPQLSGISNPAQANT GHPEQMGKKLVLNFYPKKHDSAISIGHCETYKGKEFDFRVTSAESRNSDAHTSKAHKE IDSPDERLQQTDTNGSWCLSASPRTHKMLGMDGYIHETYYEGEISLSADKPVGIDATT DKSYPQNEDCGGGKQGCITGLVVDVEAKPVELIGMTFCKKPPTADWNDGATENVTHLP TTQHSPSLFNEENCQGTSGRALDEVLPFFSRGCEEEKEVQNKCLGNNNSNFHQEAALG VPIHYQNDGSFLYLLTPVSSPPSPDSVYRWLSCDEEGSHRQSNAVSAESPSLTGSTEC LIASENSSPVNCNEALTKSSSKYHMTSMLEQGHPEKNMVLGSEVKSCSNESRTPCQSE ENIRTVNACADGSQDMSQISGPDGKSRPTPLSQIGFRDPASVGAGQQLTLLSLEVHTE SRGDLRPDPRFDAVNVVALAIQNDNDSETEVHVLLYSKTGFYQRNLDGIFGLKVFVFS EEKHLFGQFMKILCSLDPDILMGWDVQGGSLGFLAERAAYLGIGLLNKISRTPSETKI KAEETNISQKGSQEELLSKPLIADSIVMEDAIIEDEWGRTHASGVHVGGRIVLNVWRL MRGEVKLNMYTVEAVAESVLRQKIPSIPYKVLTKWFSSGPAQARYRCVEYVVERAKLN LQIMNKLDMINRTSELARVFGIDFFSVLSRGSQFRVESMFLRLAHTQNYLAISPGNQQ VASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMIIAYNLCFCTCLGKIANSKVN TLGVSSYAPDPNVLRNLKDQVLLTPNGVMYVPSKVRKGVLPRLLEEILSTRIMVKQAM KKLTPSQQVLQRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLE KAISYVNAHEKWRANVIYGDTDSMFVLLKGRTVKESFKIGHEIASAITAMNPNPVTLK MEKVYHPCFLLTKKRYVGYSYESPDQVKPVFDAKGIETVRRDTCGAVAKTMEQSLRLF FEHQDIPKVKAYLHRQWTRILSGRVSLQDFVFAKEVRLGTYSTKVGSLPPAAIVATKA MRADPRAEPRYAERVPYVVIHGEPGARLVDMVVDPLELLAINSPYRLNDLYYINKQII PALQRVFGLVGADLNRWFSEMPRLAREAFGKCGVHALNPQRTRIDYYYLSKHCILCGD LVQASAHLCGKCSENKTAAATAIVGRTSKSEREMQHLVAICRHCGGGDWLVESGVKCN SLACSVFYERRKVQKELQGLSAVATDKGLYPKCMVEWF" CDS complement(join(38892639..38892812,38892931..38893545, 38893903..38894206,38894390..38894595,38895009..38895116, 38895238..38895513,38895733..38895879,38896316..38896907, 38897134..38897276,38897772..38898121,38898194..38898244, 38898332..38898559,38898836..38900358,38901213..38901268)) /locus_tag="TCM_026537" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Recovery protein 3 isoform 3" /protein_id="EOY11312.1" /db_xref="Phytozome:POPTR_0013s02320.1" /db_xref="TAIR:AT1G67500.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HTM5" /translation="MLPHLKKKMFVLNFCLLVKWLANSHAADDINSDDELVRETILTP LLPATTIDKVLEKASIDYESESQKECQDILDSVGDLIEFDGLKERNSHSYDHIQISSG KHIPQTDGSSDDLGLSPSAGSVANSSKADMKTELKRSSQDTSKTFSTKRKRKKLLWGS LPLSVTGKGKDNSDSVSFNITEACADEIKECLGTSFSAENDLGKASDPLNKNAHASDD KQEAGILVECTVRDLMRRKRSRRIEPADCGSVRSENVHLKMEKGKDSFFCPKQLNFHG SHNELDKKGPGSLNHSPSLANEQKEFPEAVGFKPTHSDSVYCTLPQLSGISNPAQANT GHPEQMGKKLVLNFYPKKHDSAISIGHCETYKGKEFDFRVTSAESRNSDAHTSKAHKE IDSPDERLQQTDTNGSWCLSASPRTHKMLGMDGYIHETYYEGEISLSADKPVGIDATT DKSYPQNEDCGGGKQGCITGLVVDVEAKPVELIGMTFCKKPPTADWNDGATENVTHLP TTQHSPSLFNEENCQGTSGRALDEVLPFFSRGCEEEKEVQNKCLGNNNSNFHQEAALG VPIHYQNDGSFLYLLTPVSSPPSPDSVYRWLSCDEEGSHRQSNAVSAESPSLTGSTEC LIASENSSPVNCNEALTKSSSKYHMTSMLEQGHPEKNMVLGSEVKSCSNESRTPCQSE ENIRTVNACADGSQDMSQISGPDGKSRPTPLSQIGFRDPASVGAGQQLTLLSLEVHTE SRGDLRPDPRFDAVNVVALAIQNDNDSETEVHVLLYSKTGFYQRNLDGIFGLKVFVFS EEKHLFGQFMKILCSLDPDILMGWDVQGGSLGFLAERAAYLGIGLLNKISRTPSETKI KAEETNISQKGSQEELLSKPLIADSIVMEDAIIEDEWGRTHASGVHVGGRIVLNVWRL MRGEVKLNMYTVEAVAESVLRQKIPSIPYKVLTKWFSSGPAQARYRCVEYVVERAKLN LQIMNKLDMINRTSELARVFGIDFFSVLSRGSQFRVESMFLRLAHTQNYLAISPGNQQ VASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMIIAYNLCFCTCLGKIANSKVN TLGVSSYAPDPNVLRNLKDQVLLTPNGVMYVPSKVRKGVLPRLLEEILSTRIMVKQAM KKLTPSQQVLQRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLE KAISYVNAHEKWRANVIYGDTDSMFVLLKGRTVKESFKIGHEIASAITAMNPNPVTLK MEKVYHPCFLLTKKRYVGYSYESPDQVKPVFDAKGIETVRRDTCGAVAKTMEQSLRLF FEHQDIPKVKAYLHRQWTRILSGRVSLQDFVFAKEVRLGTYSTKVGSLPPAAIVATKA MRADPRAEPRYAERVPYVVIHGEPGARLVDMVVDPLELLAINSPYRLNDLYYINKQII PALQRVFGLVGADLNRWFSEMPRLAREAFGKCGVHALNPQRTRIDYYYLSKHCILCGD LVQASAHLCGKCSENKTAAATAIVGRTSKSEREMQHLVAICRHCGGGDWLVESGVKCN SLACSVFYERRKVQKELQGLSAVATDKGLYPKCMVEWF" mRNA complement(join(<38894183..38894206,38894390..38894595, 38895009..38895116,38895238..38895513,38895733..38895879, 38896316..38896907,38897134..38897276,38897772..38898121, 38898194..38898244,38898332..38898559,38898836..38900390, 38901195..38901596,38901685..38901776,38901859..38902026, 38902162..38902317,38902886..38902954,38903506..38903548, 38903671..38903783,38903895..38903944,38904043..38904109, 38904366..38904448,38904610..38904840)) /locus_tag="TCM_026537" /product="Recovery protein 3 isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT1G67500.2" /inference="similar to AA sequence:Phytozome:POPTR_0013s02320.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1552t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1552t8; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1649t8" CDS complement(join(<38894185..38894206,38894390..38894595, 38895009..38895116,38895238..38895513,38895733..38895879, 38896316..38896907,38897134..38897276,38897772..38898121, 38898194..38898244,38898332..38898559,38898836..38900390, 38901195..38901596,38901685..38901776,38901859..38901961)) /locus_tag="TCM_026537" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Recovery protein 3 isoform 2" /protein_id="EOY11310.1" /db_xref="Phytozome:POPTR_0013s02320.1" /db_xref="TAIR:AT1G67500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O64795" /translation="MWHVSAELDVSSDQDICHVKRQSLCELEGDATLDDILNQQFKIY TSLSQTCSDVKMVQSLIPIWEEECERTGMHEMALPSYPDRPLSEDVLKALSLGVGFED ELMKLCSKVEETLSHNELGFEQSVIPSANEENLVGPTHINLNHTVPQALSCSKEQSLL GSLSQHCKPCEKEMNAASSEKKDVCPELLSVGEILSSQTATDTEALGLLAWLANSHAA DDINSDDELVRETILTPLLPATTIDKVLEKASIDYESESQKECQDILDSVGDLIEFDG LKERNSHSYDHIQISSGKHIPQTDGSSDDLGLSPSAGSVANSSKADMKTELKRSSQDT SKTFSTKRKRKKLLWGSLPLSVTGKGKDNSDSVSFNITEACADEIKECLGTSFSAEND LGKASDPLNKNAHASDDKQEAGILVECTVRDLMRRKRSRRIEPADCGSVRSENVHLKM EKGKDSFFCPKQLNFHGSHNELDKKGPGSLNHSPSLANEQKEFPEAVGFKPTHSDSVY CTLPQLSGISNPAQANTGHPEQMGKKLVLNFYPKKHDSAISIGHCETYKGKEFDFRVT SAESRNSDAHTSKAHKEIDSPDERLQQTDTNGSWCLSASPRTHKMLGMDGYIHETYYE GEISLSADKPVGIDATTDKSYPQNEDCGGGKQGCITGLVVDVEAKPVELIGMTFCKKP PTADWNDGATENVTHLPTTQHSPSLFNEENCQGTSGRALDEVLPFFSRGCEEEKEVQN KCLGNNNSNFHQEAALGVPIHYQNDGSFLYLLTPVSSPPSPDSVYRWLSCDEEGSHRQ SNAVSAESPSLTGSTECLIASENSSPVNCNEALTKSSSKYHMTSMLEQGHPEKNMVLG SEVKSCSNESRTPCQSEENIRTVNACADGSQDMSQISGPDGKSRPTPLSQIGFRDPAS VGAGQQLTLLSLEVHTESRGDLRPDPRFDAVNVVALAIQNDNDSETEVHVLLYSKTGF YQRNLDGIFGLKVFVFSEEKHLFGQFMKILCSLDPDILMGWDVQGGSLGFLAERAAYL GIGLLNKISRTPSETKIKAEETNISQKGSQEELLSKPLIADSIVMEDAIIEDEWGRTH ASGVHVGGRIVLNVWRLMRGEVKLNMYTVEAVAESVLRQKIPSIPYKVLTKWFSSGPA QARYRCVEYVVERAKLNLQIMNKLDMINRTSELARVFGIDFFSVLSRGSQFRVESMFL RLAHTQNYLAISPGNQQVASQPAMECLPLVMEPESGFYADPVVVLDFQSLYPSMIIAY NLCFCTCLGKIANSKVNTLGVSSYAPDPNVLRNLKDQVLLTPNGVMYVPSKVRKGVLP RLLEEILSTRIMVKQAMKKLTPSQQVLQRIFNARQLALKLIANVTYGYTAAGFSGRMP CAELADSIVQCGRSTLEKAISYVNAHEKWRANVIYGDTDSMFVLLKG" mobile_element complement(38905020..38905180) /note="source:CACAO_Mutator_E39_scaffold_1 9146 9303" /mobile_element_type="transposon:TIR/Mutator" gene complement(38905342..38914552) /locus_tag="TCM_026538" /note="dbxref CacaoGD:Thecc1EG026538" mRNA complement(join(38905342..38906498,38906590..38906853, 38906931..38907235,38907307..38907414,38907517..38907602, 38907775..38908062,38908146..38908386,38908479..38908759, 38909562..38910185,38911883..38912469,38914412..38914552)) /locus_tag="TCM_026538" /product="Lipoxygenase 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400036451" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026540t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s03560.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc504t37" mobile_element complement(38905648..38905702) /note="source:CACAO_Again_on_E160_scaffold_6 4479 4529" /mobile_element_type="transposon:TIR/hAT" CDS complement(join(38905742..38906498,38906590..38906853, 38906931..38907235,38907307..38907414,38907517..38907602, 38907775..38908062,38908146..38908386,38908479..38908759, 38909562..38909763)) /locus_tag="TCM_026538" /note="paralog of Thecc1EG026540t1" /codon_start=1 /product="Lipoxygenase 1" /protein_id="EOY11313.1" /db_xref="Phytozome:POPTR_0005s03560.1" /db_xref="TAIR:AT1G55020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LUW0" /translation="MNFGIGPMALNNAGKQKKIQGSVVVVKKNLLDYNDLNDFQSGPS DTILEMLGQRVSLRLVSADKTDPTNMLGGKMGAPAYLQNWNFTPVLGDCKFTVSFAWD EDLGTPGAILVRNAHHGEFYLKTVTLDDVPGRGPIHFVCNSWVYPDEKYQSDRVFFAN KTYLPNEMPGPLRKYREEELKVLRGNGEGELKEWDRVYDYALYNDLGDPDKGQDYQRQ TLGGSLEYPYPRRGRTGRPPTKTDKSCESRLPLPKSLFIYVPRDEKFGHVKLLDFVGN GLSALPQNIFPIFEALCGNPPKEFDSFNEVLRVLYGGNIRSLIPNEKLKELLDYPVPQ VIQDSTSAWRTDAEFAREMLAGVNPVVIRRLEEFPPKSKLDPKIYGNQNSLIRKEHIE CNLGGYTIEQALMGNKLFILDHHDSLMPYLRRINTTTTKTYASRTLLFLTADGTLKPL AIELSYPHPEADIYGCVSKVYKPAEEGVEGSIWQLAKAYVAVNDSGYHQLISHWLNTH AVIEPFVIATNRQLSVVHPIYKLLQPHFRDTMNINALARQTLINANGILELTVFPGKY AMEMSSAIYKSWNFLEQALPVDLKKRGIAVDDKNSPRGLRLLIKDYPYAVDGLEIWFA IEKWVRDYCSFYYKSDAMVQQDPELQAWWKELRERGHGDKKDEPWWPSMQTLEELIHS CTIIIWVASALHAAVNFGQYPYAGYLPNRPTISRMFMPEKGSPEYAELETNFERVFLK IVTSQLMTLLGVSLIEILSKHSPDEVYLGQRSDPDKWTTDAAPLKAFNDFGNKLSQIE QRIIQMNHDKTLKNRSGPVNVLYTLLFPTSESGLTGKGIPNSVSI" mobile_element 38912557..38913378 /note="source:CACAO_Again_on_S_E199_scaffold_6 1 830" /mobile_element_type="transposon:TIR/hAT" gene complement(38914599..38917942) /locus_tag="TCM_026539" /note="dbxref CacaoGD:Thecc1EG026539" mRNA complement(join(38914599..38915402,38916139..38916481, 38916572..38916740,38916846..38917109,38917214..38917343, 38917610..38917942)) /locus_tag="TCM_026539" /product="PLAT/LH2 domain-containing lipoxygenase family protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026543t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s03560.1" /note="quality class is medium, express is medium, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.53 coverage" CDS complement(join(38914987..38915402,38916139..38916481, 38916572..38916740,38916846..38917109,38917214..38917343, 38917610..38917721)) /locus_tag="TCM_026539" /note="paralog of Thecc1EG026543t1" /codon_start=1 /product="PLAT/LH2 domain-containing lipoxygenase family protein, putative" /protein_id="EOY11314.1" /db_xref="Phytozome:POPTR_0005s03560.1" /db_xref="TAIR:AT3G22400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LUW0" /translation="MSNSQPDSNVFSVRIVSIDHYMALPISGYDTCYSSFQGDKFGVV SKVYTPMEHGVEGSIWQFAKAFVAINDCAHHQLISHWLNTHAVLEPFVIATNKQLSVV HLICKLLHPHFRDTMTINALARELLVNAGGVIKITFCSGKYSMEMSSEIYKSWNFFDQ ALPSDLKKRGIAVDDTNSLHGLRLLIKDYPYAVDGLKIWFAIEKWVRDYCSFYYKTDG MVQQDPELIESCTIIIWIASAPHAAVNFGQFAYAGYSLNRPTLSRRLMPEKGTPEYAE LEKNPDKVFFRTITSQLQTFIGMSVVEVLSKHASRRINKQSFVWKSIIKPMTEADVCS FVLRGGKNWGDDQCWDLVRVKVAWWAKAKWLVDFQQLEQTIRCLEVNRLHTRIRGGRQ TVEWEPLNRGFLKFNVDGAAKGNPCQAAIRGVLREEEGVVKILFSIPIGISKANTAEV MAIKEAFKLFGVSKWVGSHCLIVESDS" gene complement(38918033..38935896) /locus_tag="TCM_026540" /note="dbxref CacaoGD:Thecc1EG026540" mRNA complement(join(38918033..38919627,38919719..38919982, 38920060..38920364,38920436..38920543,38920646..38920731, 38920904..38921191,38921275..38921515,38921608..38921888, 38922601..38922817,38929620..38929753,38935712..38935896)) /locus_tag="TCM_026540" /product="Lipoxygenase 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g39730.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026538t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s03560.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.51 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11539t1" CDS complement(join(38918871..38919627,38919719..38919982, 38920060..38920364,38920436..38920543,38920646..38920731, 38920904..38921191,38921275..38921515,38921608..38921888, 38922601..38922802)) /locus_tag="TCM_026540" /note="paralog of Thecc1EG026538t1" /codon_start=1 /product="Lipoxygenase 1" /protein_id="EOY11315.1" /db_xref="Phytozome:POPTR_0005s03560.1" /db_xref="TAIR:AT1G55020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LUW0" /translation="MNFGIGPMALNNPVKQKKIQGSVVVVKKNLLDYNDLNDFQSGPA DTILEMLGQRVSLRLVSAEKTDPTNMLGGKMGAPAYLQNWNFTPVLGDCKFTVSFAWD EDLGTPGAILVRNAHHGEFYLKTVTLDDVPGRGPIHFVCNSWVYPDEKYQSDRVFFAN KTYLPNEMPGPLRKYREEELKVLRGNGEGELKEWDRVYDYALYNDLGDPDKGQDYQRQ TLGGSLEYPYPRRGRTGRPPTKTDKSCESRLPLPKSLFIYVPRDEKFGHVKLLDFVGN GLSALPQNIFPIFEALCGNPPKEFDSFNEVLRVLYGGNIRSLIPNEKLKELLDYPVPQ VIQDSTSAWRTDAEFAREMLAGVNPVVIRRLEEFPPKSKLDPKIYGNQNSLIRKEHIE CNLGGYTIEQALMGNKLFILDHHDSLMPYLRRINTTTTKTYASRTLLFLTADGTLKPL AIELSYPHPEADIYGCVSKVYKPAEEGVEGSIWQLAKAYVAVNDSGYHQLISHWLNTH AVIEPFVIATNRQLSVVHPIYKLLQPHFRDTMNINALARQTLINANGILELTVFPGKY AMEMSSAIYKSWNFLEQALPVDLKKRGIAVDDKNSPRGLRLLIKDYPYAVDGLEIWFA IEKWVRDYCSFYYKSDAMVQQDPELQAWWKELRERGHGDKKDEPWWPSMQTLEELIHS CTIIIWVASALHAAVNFGQYPYAGYLPNRPTISRMFMPEKGSPEYAELETNFERVFLK IVTSQLMTLLGVSLIEILSKHSPDEVYLGQRSDPDKWTTDAAPLKAFNDFGNKLSQIE QRIIQMNHDKTLKNRSGPVNVPYTLLFPTSESGLTGKGIPNSVSI" mobile_element 38923017..38923097 /note="source:CACAO_on_E172_scaffold_5 363 463" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 38923036..38923166 /note="source:scaffold_4_CACTA_0510 5750 5883" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(38929092..38929543) /note="source:CACAO_M_S_E32591_F276_scaffold_4 7346 7828" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(38929541..38929757) /note="source:CACAO_M_S_E32591_F276_scaffold_4 473 690" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(38929758..38930320) /note="source:CACAO_M_S_E32591_F276_scaffold_4 2 642" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(38933404..38933455) /note="source:CACAO_M_E42600_F369_scaffold_5 1359 1407" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(38933409..38933457) /note="source:scaffold_2_CACTA_0256 2655 2696" /mobile_element_type="transposon:TIR/CACTA" mobile_element 38933420..38933469 /note="source:CACAO_M_S_E144962_F231_scaffold_10 1445 1494" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(38934151..38934630) /note="source:CACAO_M_S_E32591_F276_scaffold_4 7346 7828" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(38934628..38934844) /note="source:CACAO_M_S_E32591_F276_scaffold_4 473 690" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 38934845..38934887 /note="source:CACAO_M_S_E38315_F276_scaffold_4 23637 23693" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(38934888..38935460) /note="source:CACAO_M_S_E51983_F276_scaffold_4 1 570" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(38935943..38943796) /locus_tag="TCM_026543" /note="dbxref CacaoGD:Thecc1EG026543" mRNA complement(join(38935943..38937328,38937407..38937515, 38937619..38937882,38937988..38938292,38938389..38938496, 38938689..38938780,38938892..38939230,38939313..38939553, 38939653..38939942,38940208..38940411,38943504..38943796)) /locus_tag="TCM_026543" /product="Lipoxygenase 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g39730.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026544t1" /inference="similar to AA sequence:Phytozome:GSVIVT01000084001" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00964t00001" CDS complement(join(38936762..38937328,38937407..38937515, 38937619..38937882,38937988..38938292,38938389..38938496, 38938689..38938780,38938892..38939230,38939313..38939553, 38939653..38939942,38940208..38940400)) /locus_tag="TCM_026543" /note="paralog of Thecc1EG026544t1" /codon_start=1 /product="Lipoxygenase 1" /protein_id="EOY11316.1" /db_xref="Phytozome:GSVIVT01000084001" /db_xref="TAIR:AT1G55020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LUW0" /translation="MILGGVLNELTGKKKSQTIKGTVVLMKKNVLDFNAIGSSAVDNV LELVGQQVTLQLVSAQNADPANENAGKLGKLAALESWNLTFTPPIAGETQYKVSFEWD EQFGAPGAIIIRNNHAAEFYLKTITLEDVPGQGRTHFVCNSWIYPDRQYKKPRVFFAN KTYLPHETPAPLRKYREEELKVLRGDGKGQLKSGDRVYDYAVYNDLGNPDLSSKLVRP ILGGSAEYPYPRRGRTGRPPSRSDPNTESRVYIPGLFSTYVPRDEQFGHLKLTDFIAY NLKALVTNVIPAFEAFVNFTPNEFDSFKEVDNLYFNGIQLPTEALNKLTSNIPLPMIK EMFRMDGQQLLKFPVPQAIEDRNKPTAWRTDEEFAREMLAGVNPLLIQLLKEFPPTSK LDPQLYGNQNSSITKKDIEYNLDGLSVEEALRSNKLFILDHHDTVIPYLRGINNTSAK TYASRTLLLLRGDNTLKPVAIELSLPHPTGDKFGVVSKVYTPVAHGVEGSIWQFAKAF VAINDCTHHQLISHWLNTHAVLEPFVIATNRQLSVVHPIYKLLHPHFRDTMTINALAR ELLVNAGGVIETTFCPGKYSMEMSSEIYKSWNFLEQALPNDLKKRGIAVDDANSLHGL RLLIEDYPYAVDGLKIWFAIEKWELREVGHGDKKDEPWWPKMQTREELIESCTIIIWI ASALHAAVNFGQFAYAGFSPNRPTLSRRLMPEKGTPEYAELEKNPEKVFFRTITSQLQ TFIGMSVVEVLSKHASDEVYLGQRASPNWTADAIPLAAFEAFHKRLAEIEEEIIRMNK DKKLKNRVGPVNVPYTLLYPTGEVGICGKGIPNSISI" mobile_element complement(38942800..38942894) /note="source:INTACT120_F22_scaffold_3-int 8098 8159" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(38943990..38961923) /locus_tag="TCM_026544" /note="dbxref CacaoGD:Thecc1EG026544" mRNA complement(join(38943990..38945204,38945312..38945575, 38945678..38945982,38946079..38946186,38946431..38946522, 38946647..38946979,38947099..38947339,38947447..38947736, 38947975..38948470,38961778..38961923)) /locus_tag="TCM_026544" /product="Lipoxygenase 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g39730.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026543t1" /inference="similar to AA sequence:Phytozome:GSVIVT01000084001" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.55 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11575t1" CDS complement(join(38944454..38945204,38945312..38945575, 38945678..38945982,38946079..38946186,38946431..38946522, 38946647..38946979,38947099..38947339,38947447..38947736, 38947975..38948182)) /locus_tag="TCM_026544" /note="paralog of Thecc1EG026543t1" /codon_start=1 /product="Lipoxygenase 1" /protein_id="EOY11317.1" /db_xref="Phytozome:GSVIVT01000084001" /db_xref="TAIR:AT1G55020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LUW0" /translation="MILGSVLNAAGNAVKEITRKKKTIKGTVILMKNNAFGFNNLVSG TADRVLEIVGQKVTLQLVSAEHADPVNGNGGKLGKQAALENWNLKITSPMAGDSRYKV YFEWDEEFGTPGAIIVRNNHSAEFYLKTITLEDVPGKGRIHFLCNSWVYPDRQYKKPR VFFANKTYLPHETPAPLRKYREEELKVLRGDGKGERKKGDRVYDYAVYNDLGNPDSSS ELARPVLGGSAEYPYPRRGRTGRPPSRSDAETESRVFIPGTFTTYVPRDEQYGHLKMS DFIAFNLKALVRNNIPAFEIKFFSNEFNSFKEVDNLYFNGIPLPTEALNKLTSNIPLP MIKEMFRTDGERLLKFPVPQVIKDRSRPTAWRTDEEFAREMLAGVNPLLICLLREFPP ASKLDPEQYGNQNSSITKEHIEHNLDGLSVEEALRKNKLFILDHHDTVIPYLRKINTT STKTHASRTLLFLRHDETLKPVAIELSLPNPAGDKYGIISKVYTPAEHGVEGSIWQFA KTFVAVNDCGHHQIISHWLNTHAVLEPFIIATNRQLSVVHPIYKLLHPHFRDTMTINA LAREILINAGGIIEETFYPVKYSMLMSSEIYKSWNFLDQALPNDLKKRGIVEDDANSL HGLRLLIEDYPYAVDGLKIWFAIEKWVRDYCSFYYKTDEMVQQDAEVQAWWKELREVG HGDKKDEPWWPKMQTREELIESCTIIIWIASALHAAVNFGQYAYGGYSPNRPTLSRRF MPEKGTPEYAELEKNPEKAFFRTITSQLQTLSGMSVIEVLSKHPSDEVYLGNRTPEWT TDVMPLAAFEDFHNRLVQIEEEMKNMNTDEKLKNRVGPVNVPYTLLYPNGEVGLSGKG IPNSISI" mobile_element 38949227..38949316 /note="source:CACAO_Helitron_E137_scaffold_4 1 89" /mobile_element_type="transposon:Helitron" mobile_element complement(38949961..38950069) /note="source:scaffold_1_CACTA_0005 6844 6947" /mobile_element_type="transposon:TIR/CACTA" mobile_element 38949979..38950344 /note="source:CACAO_MITE135_scaffold_9 1 383" /mobile_element_type="transposon:TIR/MITE" mobile_element 38950336..38950861 /note="source:CACAO_on_E2_scaffold_1 601 1128" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(38951446..38951555) /note="source:scaffold_4_CACTA_0483 2538 2648" /mobile_element_type="transposon:TIR/CACTA" mobile_element 38951447..38951531 /note="source:scaffold_1_CACTA_0005 6268 6352" /mobile_element_type="transposon:TIR/CACTA" gene complement(38951560..38955585) /locus_tag="TCM_026545" /note="dbxref CacaoGD:Thecc1EG026545" mRNA complement(join(38951560..38951990,38952942..38953035, 38954522..38954731,38955311..38955585)) /locus_tag="TCM_026545" /product="Lipoxygenase 1-like protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026543t1" /inference="similar to AA sequence:frave:gene22519" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.30 coverage" CDS complement(join(38951789..38951990,38952942..38953035, 38954522..38954731,38955311..38955428)) /locus_tag="TCM_026545" /note="dbxref frave:gene22519; paralog of Thecc1EG026543t1" /codon_start=1 /product="Lipoxygenase 1-like protein" /protein_id="EOY11318.1" /db_xref="TAIR:AT1G55020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7L1P1" /translation="MKKNVSDFNVLGSSAVDSVHELVGQQVTLQLISAENADPVIGNG GKLGKQEALENWNLTVTPPVAGDSSYSVTFEWDEEFGTPGAIIVRKNHSAEFYLKTIT LKDVPGEERHHRQGCFVLLQTVQRLEKLKLVPEYLTFNCFHGAKDESSPHLTAFAKSF SKITLRDAHLDATNNCKAFHGALISAVLESIIPTDKEKSNRMRPFSS" mobile_element 38954341..38954406 /note="source:CACAO_M_S_E99756_F51_scaffold_9 1228 1301" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 38954361..38954449 /note="source:scaffold_5_CACTA_0580 7222 7286" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(38956597..38956941) /note="source:CACAO_PIF_E54_scaffold_3 8204 8556" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 38959691..38959763 /note="source:scaffold_4_CACTA_0506 6526 6600" /mobile_element_type="transposon:TIR/CACTA" mobile_element 38960574..38961407 /note="source:CACAO_MITE_S26_scaffold_1 3 869" /mobile_element_type="transposon:TIR/MITE" gene complement(38962165..38967612) /locus_tag="TCM_026546" /note="dbxref CacaoGD:Thecc1EG026546" mRNA complement(join(38962165..38963119,38963403..38963666, 38963773..38964077,38964202..38964309,38964460..38964545, 38964652..38964993,38965080..38965320,38965408..38965697, 38966927..38967612)) /locus_tag="TCM_026546" /product="Lipoxygenase 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s03560.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026540t1" /inference="similar to AA sequence:Phytozome:GSVIVT01000084001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g15151t2" CDS complement(join(38962366..38963119,38963403..38963666, 38963773..38964077,38964202..38964309,38964460..38964545, 38964652..38964993,38965080..38965320,38965408..38965697, 38966927..38967137)) /locus_tag="TCM_026546" /note="paralog of Thecc1EG026540t1" /codon_start=1 /product="Lipoxygenase 1" /protein_id="EOY11319.1" /db_xref="Phytozome:GSVIVT01000084001" /db_xref="TAIR:AT1G55020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LUW0" /translation="MLSHLLNAVTGDDGSKEMESSSGKIKGTVVLMKKNVLDFNDFQA SVLDGVHELLGKRVSLQLISAEKGDAANGLQGKLGKPAYLDNWTLTDASPVAGESKFS VNFDWDEEIGTPGGLLIKNNHHSEFYLKTVSLEHVPDHGPVHFVCNSWVYPGKKYEKD RIFFSNKTYLPHEMPEPLRKYREEELRALRGNGEGELQEWDRVYDYAYYNDLGNPDKG PEYARPVLGGSAQYPYPRRGRTGRPPAKTDPNTESRIPLLMSLNIYVPRDERFGHLKL SDFLAYALKSVVQFIVPELEDLTDRTRNEFDSFKDVDDLYYGGVKLPSGPLLDNIIKN IPLEMLKEIFRTDGEQLLKFPVPQVIQNSRTAWRTDEEFAREMLAGVDPVIIRLLEEF PPTSKLDPKVYGNQNSAITKEHIEHNLEGLTIEEALRTNRLFILDHHDTLMPYLRRVN STTTKTYASRTVLLLRNDGTLKPLAIELSLPHPNGDPLGAVSKVYTPAEHGVEGSIWQ LAKAYVAVNDSGVHQLISHWLNTHAVIEPFVIATNRQLSVVHPIYKLLQPHYRDTMNI NAFARQILINGGGILELTVFPGKYAMEMSSVIYKNWNLLDQALPRDLKIRGVAVDDKN SPNGLRLLIKDYPYAVDGLEIWFAIEKWVRDYCSFYYKTDEMVQQDIELQAWWKELRE EGHGDKKNEPWWPKMQTREELIDTCTIIIWVASALHAAVNFGQYPYAGYLPNRPTISR RFMPEKGTPEYAELESNPDKAYLKTITAQLQTLLGISLIEILSRHSSDEVYLGQRDTP EWTSDATPLAAFEEFGKRLSGIEERIVEMNKDEQLKNRVGPVNMPYTLLYPTSEGGLT GKGIPNSVSI" mobile_element complement(38966298..38966376) /note="source:CACAO_M_S_E16543_F3_scaffold_2 4765 4831" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 38966306..38966360 /note="source:CACAO_M_S_E7994_F98_scaffold_2 2032 2086" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(38966313..38966398) /note="source:CACAO_M_E52694_F25_scaffold_8 3985 4077" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 38968188..38968535 /note="source:INTACT639F_F363_scaffold_5-int 7435 7782" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 38968542..38968641 /note="source:INTACT639F_F363_scaffold_5-int 8479 8577" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(38968843..38968878) /note="source:CACAO_M_E58268_F98_scaffold_9 621 656" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(38971164..38971773) /note="source:CACAO_M_S_E5285_F300_scaffold_1 17251 17849" /mobile_element_type="retrotransposon:LTR/Copia" gene 38974417..38978560 /locus_tag="TCM_026547" /note="dbxref CacaoGD:Thecc1EG026547" mRNA join(38974417..38974981,38975527..38975729, 38976028..38976103,38976458..38976757,38976868..38977025, 38977416..38977532,38977764..38977943,38978065..38978445) /locus_tag="TCM_026547" /product="SNARE associated Golgi protein family isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017942001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020587t1" /inference="similar to AA sequence:Phytozome:GSVIVT01017942001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11373t1" mRNA join(38974714..38974981,38975527..38975729, 38976028..38976103,38976458..38976757,38976868..38977024, 38978063..38978560) /locus_tag="TCM_026547" /product="SNARE associated Golgi protein family isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01017942001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020587t2" /inference="similar to AA sequence:ricco:29726.m003890" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc945t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11373t1" CDS join(38974945..38974981,38975527..38975729, 38976028..38976103,38976458..38976757,38976868..38977025, 38977416..38977532,38977764..38977943,38978065..38978253) /locus_tag="TCM_026547" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG020587t1" /codon_start=1 /product="SNARE associated Golgi protein family isoform 1" /protein_id="EOY11320.1" /db_xref="Phytozome:GSVIVT01017942001" /db_xref="TAIR:AT4G14950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5XF36" /translation="MPTTQEQNLFLSGLREKHREELENLTLTTQPLRTLKLFVFAVIQ WIHQTIRLRAGWFIFSSTLAGSIGILVMTIGRHHEMIQELIHYVVFGAWWLALGVASS IGLGSGLHTFVLYLGPHIAFFTIKAVQCGRVDLKSALYDTIQLNSGPSWLNKNCSEYG PPLFPLEHGSRVPLGSILPQVQLEAILWGIGTALGELPPYFISKAACISGSNLDVMND FDSSSMENGGNTANHLKQIEYWLLSHSQYLNFFTILVLASVPNPLFDLAGIMSGQFGI PFWKFFLATLLGKAIIKTHIQTVFIISVCNYQLLDFIENELIRVLSFIPGLATILPNL IMNLQTIRDKYLSPSPPVSSNIKVKRWDLSLASMWNTVVWLMLLNFFIKIVTATARNF LKEQQEKELITLSNHYPELNPSASKSI" CDS join(38974945..38974981,38975527..38975729, 38976028..38976103,38976458..38976757,38976868..38977024, 38978063..38978141) /locus_tag="TCM_026547" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29726.m003890; paralog of Thecc1EG020587t2" /codon_start=1 /product="SNARE associated Golgi protein family isoform 2" /protein_id="EOY11321.1" /db_xref="TAIR:AT4G14950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5XF36" /translation="MPTTQEQNLFLSGLREKHREELENLTLTTQPLRTLKLFVFAVIQ WIHQTIRLRAGWFIFSSTLAGSIGILVMTIGRHHEMIQELIHYVVFGAWWLALGVASS IGLGSGLHTFVLYLGPHIAFFTIKAVQCGRVDLKSALYDTIQLNSGPSWLNKNCSEYG PPLFPLEHGSRVPLGSILPQVQLEAILWGIGTALGELPPYFISKAACISGSNLDVMND FDSSSMENGGNTANHLKQIEYWLLSHSQYLNFFTILVLASGEEVGFITCFNVEHCCMA HASKLLH" mobile_element complement(38978554..38978608) /note="source:CACAO_M_S_E15643_F163_scaffold_2 7766 7820" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(38978862..38980558) /locus_tag="TCM_026548" /note="dbxref CacaoGD:Thecc1EG026548" mRNA complement(join(38978862..38979489,38980054..38980558)) /locus_tag="TCM_026548" /product="Peptidoglycan-binding LysM domain-containing protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30128.m008780" /inference="similar to AA sequence:ricco:30128.m008780" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.58 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g15105t2" CDS complement(join(38979115..38979489,38980054..38980455)) /locus_tag="TCM_026548" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30128.m008780" /codon_start=1 /product="Peptidoglycan-binding LysM domain-containing protein isoform 1" /protein_id="EOY11322.1" /db_xref="TAIR:AT1G55000.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HZ09" /translation="MSCCCDQNDDESALTTPLSSSSSPTVTDSTATISPMNSHFSALT CRDTLRLIFEKLSLTDLARASCVCKAWNAVASDDEMVVEAFKAPWKLLEVVGKPSSGS FWRDNGIGKFAISHRILRGESVASLAVKYSVQVMDIKRLNNMMSDHGIYSRERLLIPI SNPDLLINGTCYIELDTYAKREVAVLYLDGKPDRKPGTLLKRVTSDRGKRRVIDSLKR SMQVDDGTAQYYLSISNGDPRAALSQFSSDLSWERQIGLA" mRNA complement(join(<38979199..38979489,38980072..>38980376)) /locus_tag="TCM_026548" /product="Peptidoglycan-binding LysM domain-containing protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s03320.1" /inference="alignment:exonerate- protein:2:ricco:30128.m008780" /inference="similar to AA sequence:Phytozome:GSVIVT01000081001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is medium, protein is partial; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc545t3; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g15105t2" CDS complement(join(<38979199..38979489,38980072..>38980374)) /locus_tag="TCM_026548" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Peptidoglycan-binding LysM domain-containing protein isoform 2" /protein_id="EOY11323.1" /db_xref="Phytozome:GSVIVT01000081001" /db_xref="TAIR:AT1G55000.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HZ09" /translation="DSTATISPMNSHFSALTCRDTLRLIFEKLSLTDLARASCVCKAW NAVASDDEMVVEAFKAPWKLLEVVGKPSSGSFWRDNGIGKFAISHRILRGESVASLAV MDIKRLNNMMSDHGIYSRERLLIPISNPDLLINGTCYIELDTYAKREVAVLYLDGKPD RKPGTLLKRVTSDRGKRRVIDSLKRSMQVDDGTAQYYL" gene complement(38980849..38983696) /locus_tag="TCM_026549" /note="dbxref CacaoGD:Thecc1EG026549" mRNA complement(join(38980849..38981596,38982341..38983696)) /locus_tag="TCM_026549" /product="Alpha/beta-Hydrolases superfamily protein, putative" /inference="alignment:exonerate-protein:2:frave:gene22530" /inference="similar to AA sequence:ricco:30128.m008779" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03676t00001_C1" CDS complement(join(38981336..38981596,38982341..38983552)) /locus_tag="TCM_026549" /note="dbxref ricco:30128.m008779" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein, putative" /protein_id="EOY11324.1" /db_xref="TAIR:AT1G54990.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FZ33" /translation="MAIITEEQEPESPKTRENKKPPKKPTSNPNSKPSKPASNPNPNS QTQSPFAFWFYFTLTISLITFLFVSFSSLSPPDPKSWFLSLPSSLRQHYSNGRIIKVQ TNPNQSPIEVFVTENGQFSSSENVVVVHGLGLSSFSYSEIIRLLGSKGVHVIALDLPG NGFSDKSRVEIEEGTNGVLGRFKEVYSLIQEKGIFWAFDQMVETGELPYEEIKSRVLV KKSVKVIALGSEEMGRVLGQVIETMGVAPVHLVLHDSAFVMAANWISENPRFIRSVTL IDTGLKPALPLWGLNIPVVGEVVLRFSFVFARLINLCCSKGIGWSELEAHRVLLKGWD ARRAVVGIGKKLNYSFDVEEWGGLDGIKGMPMQVLWSSGWSDEWRKEGRRIAEALPKA KFVAHSGGRWPQGDAAGELAENVAQFVSSLPKTVRQVEEEPIPEHIQKMFDEAKDTDH HHHHHHHGQGHGHGHSAHGHDHAHAAGFMDAYGLGHTWGT" gene 38983801..38990144 /locus_tag="TCM_026550" /note="dbxref CacaoGD:Thecc1EG026550" mRNA join(38983801..38984362,38985175..38985300, 38985418..38985537,38985653..38985928,38986194..38986366, 38986705..38986959,38987289..38987440,38987661..38987851, 38988231..38988339,38988434..38988588,38988908..38989000, 38989610..38989690,38989812..38990144) /locus_tag="TCM_026550" /product="Metallopeptidase M24 family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30128.m008778" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000440t1" /inference="similar to AA sequence:ricco:30128.m008778" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11408t2" CDS join(38984033..38984362,38985175..38985300, 38985418..38985537,38985653..38985928,38986194..38986366, 38986705..38986959,38987289..38987440,38987661..38987851, 38988231..38988339,38988434..38988588,38988908..38989000, 38989610..38989690,38989812..38989883) /locus_tag="TCM_026550" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30128.m008778; paralog of Thecc1EG000440t1" /codon_start=1 /product="Metallopeptidase M24 family protein isoform 1" /protein_id="EOY11325.1" /db_xref="TAIR:AT3G05350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RY11" /translation="MHSLPSQAVRPLSLSPSLSASRFPFFSFSLPIFHKFKINPTIYK KSQKGPPFLTLWCCSSGSVTAKPSSELSRNRAVQEPDEKVLALRQLFSKPGIGIDAYI IPSQDAHQSEFIAECYMRRAYISGFTGSAGTAVVTKDKAALWTDGRYFLQAEKQLSSS WTLMRAGNLGVPTTSQWLNDILAPGGTVGIDPFLFSYDAAEELKEAISKKNLELVYLY DLNLVDEIWKESRPKPPNKPIRVHDLKYAGLDVVSKLSSLKAELVGTGSSAIVISMLD EAAWLLNLRGSDVPHSSVMYAYLIVEVDAAKLFVDNSKVTPEVMDHLKNAGVELRPYD SILSEIRRLAAQGANLWLDTSSVNAAIVETYKSACDKYLMNHGSRGKIKNKRYGESNG LSIGPSGVYMPSPISLAKALKNPTELEGMQNSHLRDAAALAQFWSWLEEEIHKNVKLT EVDVADKLLEFRSKQDGFLDTSFDTISGSGANGAIIHYKPEPESCSVVDPNKLFLLDS GAQYVDGTTDITRTVHFGEPTAREKECFTRVLKGHIALDQAVFPENTPGFVLDAFARS ALWKIGLDYRHGTGHGVGAALNVHEGPQSISYRYGNMTPLQKGMIVSNEPGYYEDHAF GIRIENLLCVQEINTPNRYGGVEYLGFEKLTFCPIQTKLVDLSLLSVEEIGWLNNYHS QVWEKVSPLLEGSARQWLWDNTRPVAEQ" mRNA join(<38985427..38985537,38985653..38985928, 38986194..38986366,38986705..38986959,38987289..38987440, 38987661..38987851,38988231..38988339,38988434..38988588, 38989610..>38989637) /locus_tag="TCM_026550" /product="Metallopeptidase M24 family protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:30128.m008778" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000440t2" /inference="similar to AA sequence:ricco:30128.m008778" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1557t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11408t2" CDS join(<38985427..38985537,38985653..38985928, 38986194..38986366,38986705..38986959,38987289..38987440, 38987661..38987851,38988231..38988339,38988434..38988588, 38989610..>38989636) /locus_tag="TCM_026550" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30128.m008778; paralog of Thecc1EG000440t2" /codon_start=1 /product="Metallopeptidase M24 family protein isoform 3" /protein_id="EOY11327.1" /db_xref="TAIR:AT3G05350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RY11" /translation="QLSSSWTLMRAGNLGVPTTSQWLNDILAPGGTVGIDPFLFSYDA AEELKEAISKKNLELVYLYDLNLVDEIWKESRPKPPNKPIRVHDLKYAGLDVVSKLSS LKAELVGTGSSAIVISMLDEAAWLLNLRGSDVPHSSVMYAYLIVEVDAAKLFVDNSKV TPEVMDHLKNAGVELRPYDSILSEIRRLAAQGANLWLDTSSVNAAIVETYKSACDKYL MNHGSRGKIKNKRYGESNGLSIGPSGVYMPSPISLAKALKNPTELEGMQNSHLRDAAA LAQFWSWLEEEIHKNVKLTEVDVADKLLEFRSKQDGFLDTSFDTISGSGANGAIIHYK PEPESCSVVDPNKLFLLDSGAQYVDGTTDITRTVHFGEPTAREKECFTRVLKGHIALD QAVFPENTPGFVLDAFARSALWKIGLDYRHGTGHGVGAALNVHEGPQSISYRYGNMTP LQKGMIVSNEPGYYEDHAFGIRIETKLVDLSLL" mRNA join(<38985508..38985537,38985653..38985928, 38986194..38986366,38986705..38986959,38987289..38987440, 38987661..38987851,38988231..38988339,38988434..38988588, 38989610..38989690,38989812..38990066) /locus_tag="TCM_026550" /product="Metallopeptidase M24 family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30128.m008778" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG000440t1" /inference="similar to AA sequence:ricco:30128.m008778" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1465t4_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11408t2" CDS join(<38985508..38985537,38985653..38985928, 38986194..38986366,38986705..38986959,38987289..38987440, 38987661..38987851,38988231..38988339,38988434..38988588, 38989610..38989690,38989812..38989883) /locus_tag="TCM_026550" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30128.m008778; paralog of Thecc1EG000440t1" /codon_start=1 /product="Metallopeptidase M24 family protein isoform 2" /protein_id="EOY11326.1" /db_xref="TAIR:AT3G05350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RY11" /translation="APGGTVGIDPFLFSYDAAEELKEAISKKNLELVYLYDLNLVDEI WKESRPKPPNKPIRVHDLKYAGLDVVSKLSSLKAELVGTGSSAIVISMLDEAAWLLNL RGSDVPHSSVMYAYLIVEVDAAKLFVDNSKVTPEVMDHLKNAGVELRPYDSILSEIRR LAAQGANLWLDTSSVNAAIVETYKSACDKYLMNHGSRGKIKNKRYGESNGLSIGPSGV YMPSPISLAKALKNPTELEGMQNSHLRDAAALAQFWSWLEEEIHKNVKLTEVDVADKL LEFRSKQDGFLDTSFDTISGSGANGAIIHYKPEPESCSVVDPNKLFLLDSGAQYVDGT TDITRTVHFGEPTAREKECFTRVLKGHIALDQAVFPENTPGFVLDAFARSALWKIGLD YRHGTGHGVGAALNVHEGPQSISYRYGNMTPLQKGMIVSNEPGYYEDHAFGIRIETKL VDLSLLSVEEIGWLNNYHSQVWEKVSPLLEGSARQWLWDNTRPVAEQ" mobile_element complement(38986063..38986128) /note="source:CACAO_M_E427_F230_scaffold_1 1093 1159" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 38990360..38991583 /locus_tag="TCM_026551" /note="dbxref CacaoGD:Thecc1EG026551" mRNA 38990360..38991583 /locus_tag="TCM_026551" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is medium, homology is paralog strong, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.34 coverage" CDS 38990436..38990645 /locus_tag="TCM_026551" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11328.1" /translation="MIMGREIVSDVLTGLILLCGTISELVLDSLIECIELWQERLKNY FFPSIRITFDELTSNLYHHNVTMHI" mobile_element 38991525..38991625 /note="source:scaffold_4_CACTA_0511 9631 9732" /mobile_element_type="transposon:TIR/CACTA" gene complement(38991794..39005195) /locus_tag="TCM_026552" /note="dbxref CacaoGD:Thecc1EG026552" mRNA complement(join(38991794..38992794,38992888..38992974, 38993056..38993142,38993632..38993717,38993946..38994049, 38994382..38994468,38994556..38994679,38994971..38995089, 38995262..38995391,38995583..38995671,38995759..38995847, 38996399..38996492,38996604..38996683,38996809..38996898, 38997263..38997349,38997444..38997488,38997593..38997669, 38997745..38997850,38998020..38998101,38998214..38998285, 38998373..38998450,38998536..38998596,38998832..38999079, 39004997..39005195)) /locus_tag="TCM_026552" /product="Long-chain acyl-CoA synthetase 7 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s02220.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020579t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s02220.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04535t00001" CDS complement(join(38992696..38992794,38992888..38992974, 38993056..38993142,38993632..38993717,38993946..38994049, 38994382..38994468,38994556..38994679,38994971..38995089, 38995262..38995391,38995583..38995671,38995759..38995847, 38996399..38996492,38996604..38996683,38996809..38996898, 38997263..38997349,38997444..38997488,38997593..38997669, 38997745..38997850,38998020..38998101,38998214..38998285, 38998373..38998450,38998536..38998596,38998832..38998958)) /locus_tag="TCM_026552" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG020579t1" /codon_start=1 /product="Long-chain acyl-CoA synthetase 7 isoform 1" /protein_id="EOY11329.1" /db_xref="Phytozome:POPTR_0013s02220.2" /db_xref="TAIR:AT5G27600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RF63" /translation="MEMESPAERRLYAIHSHLLPSSNAEDDSFLRRNHTSSSHFFHGQ KYGVVLPEKLQSGKWNVYRSVRSPMKLVSRFADHPEIGTLHDNFVHAVETYKDFKYLG TRIRVDGTVGEYKWMTFGEAATAREAIGSGLRYYGIEQGACVGLYFINRPEWLVVDHA CAAYSYTSVPLYDTLGPDAVNYVVNHSGIQAIFCVPQTLNTLLSFISQIPSVRLIVVV GGADEHLPSLPLTSGVKLISYLKLLGQGRSNLQPFCPPKPEDVATICYTSGTTGTPKG VVLTHGNLIANVAGFCRAIKFYPSDIYISYLPLAHIYERTNQIISVYYGVGIGFYQGD NLKLMDDLAALRPTIFCSVPRLYNRIYAGITNAVKTSGVLKERLFRAAYNSKKQAIMN GRNASPIWDRLVFNKIREKLGGRVRFMGSGASPLSPDVMDFLRVCFGCLVVEGYGMTE TSCIITLMDEGDNLSGHVGSPNSACEIKLVDVPEMNYTSEDEPYPRGEICVRGPIVFQ GYYKDEIQTREVVDDDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKVEN VYVKCKFVLQCFIYGDSLNSSLVAVVAVEPDVLRNWAASEGIQYADLAQLCNDPRARN AVLAEMDDVGREAQLKGFEFAKALTLVPEPFTVENGLLTPTFKIKRPQAKAYFAKAIS NMYAELSVSDPTPQKMS" mRNA complement(join(38993693..38994049,38994382..38994468, 38994556..38994679,38994971..38995089,38995262..38995391, 38995583..38995671,38995759..38995847,38996399..38996492, 38996604..38996683,38996809..38996898,38997263..38997349, 38997444..38997488,38997593..38997669,38997745..38997850, 38998020..38998101,38998214..38998285,38998373..38998450, 38998536..38998596,38998832..38999051)) /locus_tag="TCM_026552" /product="Long-chain acyl-CoA synthetase 7 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s02220.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020579t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s02220.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc752t6; inference alignment:Newbler:10:TSA:cgbaB_g04535t00001" CDS complement(join(38993875..38994049,38994382..38994468, 38994556..38994679,38994971..38995089,38995262..38995391, 38995583..38995671,38995759..38995847,38996399..38996492, 38996604..38996683,38996809..38996898,38997263..38997349, 38997444..38997488,38997593..38997669,38997745..38997850, 38998020..38998101,38998214..38998285,38998373..38998450, 38998536..38998596,38998832..38998958)) /locus_tag="TCM_026552" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG020579t1" /codon_start=1 /product="Long-chain acyl-CoA synthetase 7 isoform 2" /protein_id="EOY11330.1" /db_xref="Phytozome:POPTR_0013s02220.2" /db_xref="TAIR:AT5G27600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RF63" /translation="MEMESPAERRLYAIHSHLLPSSNAEDDSFLRRNHTSSSHFFHGQ KYGVVLPEKLQSGKWNVYRSVRSPMKLVSRFADHPEIGTLHDNFVHAVETYKDFKYLG TRIRVDGTVGEYKWMTFGEAATAREAIGSGLRYYGIEQGACVGLYFINRPEWLVVDHA CAAYSYTSVPLYDTLGPDAVNYVVNHSGIQAIFCVPQTLNTLLSFISQIPSVRLIVVV GGADEHLPSLPLTSGVKLISYLKLLGQGRSNLQPFCPPKPEDVATICYTSGTTGTPKG VVLTHGNLIANVAGFCRAIKFYPSDIYISYLPLAHIYERTNQIISVYYGVGIGFYQGD NLKLMDDLAALRPTIFCSVPRLYNRIYAGITNAVKTSGVLKERLFRAAYNSKKQAIMN GRNASPIWDRLVFNKIREKLGGRVRFMGSGASPLSPDVMDFLRVCFGCLVVEGYGMTE TSCIITLMDEGDNLSGHVGSPNSACEIKLVDVPEMNYTSEDEPYPRGEICVRGPIVFQ GYYKDEIQTREVVDDDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKVEN VYVKCKFVLQCFIYGKEIVCKCNNSGPSITCLANFRV" mobile_element complement(39000044..39000160) /note="source:CACAO_on_E454_scaffold_2 286 400" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(39000148..39000625) /note="source:scaffold_8_CACTA_0858 14216 14730" /mobile_element_type="transposon:TIR/CACTA" mobile_element 39001392..39002791 /note="source:CACAO_Again_on_E108_scaffold_4 1 1754" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(39002503..39002827) /note="source:CACAO_Again_on_E207_scaffold_9 1 314" /mobile_element_type="transposon:TIR/hAT" mobile_element 39003257..39003438 /note="source:scaffold_7_CACTA_0795 2836 3025" /mobile_element_type="transposon:TIR/CACTA" gene 39005548..39015231 /locus_tag="TCM_026553" /note="dbxref CacaoGD:Thecc1EG026553" mRNA join(39005548..39005892,39006562..39006587, 39006924..39007151,39008055..39008147,39008497..39008727, 39009132..39009301,39009390..39009594,39010049..39010717, 39010805..39011032,39011321..39012179) /locus_tag="TCM_026553" /product="Mannosylglycoprotein endo-beta-mannosidase isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s02210.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s02210.1" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc162t7; alternateUTRof:Thecc1EG026553t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11396t2" mRNA join(39005597..39005892,39006562..39006700, 39006910..39007137,39007251..39007309,39008099..39008147, 39008497..39008727,39009132..39009301,39009390..39009594, 39010049..39010717,39010805..39011032,39011321..39012406, 39012594..39012653,39013953..39014271,39014440..39015231) /locus_tag="TCM_026553" /product="Mannosylglycoprotein endo-beta-mannosidase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s02210.1" /inference="similar to AA sequence:ricco:30128.m008776" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11396t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11396t2" mRNA join(39005597..39005892,39006562..39006700, 39006910..39007137,39007251..39007309,39008099..39008147, 39008497..39008727,39009132..39009301,39009390..39009594, 39010049..39010717,39010805..39011032,39011321..39012406, 39012594..39012791) /locus_tag="TCM_026553" /product="Mannosylglycoprotein endo-beta-mannosidase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s02210.1" /inference="similar to AA sequence:ricco:30128.m008776" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11396t3; alternateUTRof:Thecc1EG026553t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11396t2" CDS join(39005747..39005892,39006562..39006700, 39006910..39007137,39007251..39007309,39008099..39008147, 39008497..39008727,39009132..39009301,39009390..39009594, 39010049..39010717,39010805..39011032,39011321..39012121) /locus_tag="TCM_026553" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30128.m008776" /codon_start=1 /product="Mannosylglycoprotein endo-beta-mannosidase isoform 1" /protein_id="EOY11331.1" /db_xref="TAIR:AT1G09010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5H7P5" /translation="MAEIGKMVLDSGWLAARSTEVKLTGTQLTTTHPPTGPTSPWMEA VVPGTVLATLVTNKTVGDPFYGLVNETIVDIADSGREYYTFWFFTKFQCKLSGTQHLD LNFRAINYSAEVYLNGHKKDLPKGMFQRHSLEVTDILNPEGTNLLAVLVYPPDHPGSI PPEGGQGGDHEIGKDVATQYVEGWDWIAPVRDRNTGIWDEVSIYVSGPVKIIDPHLVS SFFDHNTRVYLHATTELENKSAWVAECSLNIQVTTELEGSICLVEHLQTQHVSVPPGA RIQYTFPQLFFYKPNLWWPNGMGKQSLYNVSITIDVKGYGKSDSWGQLFGFRKIESHI DSATGGRLFKVNGQPIFIRGGNWILSDCLLRLSEERYKTDVKFHADMNLNMIRCWGGG LAERPEFYHYCDVYGLLVWQEFWITGDVDGRGIPVSNPNGPLDHDLFMLCARDTVKLL RNHPSLALWVGGNEQVPPPDLNTALKNDLKLHPFFENQSENAMSVEDMSTVFKDPSQY LDGTRIYIQGSLWDGFANGKGDFTDGPYEIQNPEDFFRDDYYNYGFNPEVGSVGMPVA ATIRATMPPEGWQIPLFKKLPNGYTEEVPNPIWEYHKYIPYSKPGKVHDQIELYGIPK DLDDFCLKAQLVNYIQYRALLEGWTSHMWSKYTGVLIWKTQNPWTGLRGQFYDHLLDQ TAGFYGCRCAAEPIHVQLNLATLFIEVVNTMSEELSNVAVEASVWDLEGACPYYKVFD THSFPPKKVVSIGEMNYPKSKNPKPVYFLLLKLYDVSNYHIISRNFYWLHLSGGDYKL LEPYRKKRIPLKITSKTFIKGSSYEIEMNVQNKSKKPDPKILTCKNNFVSRHGDGDFD MASLETTFEETEEKQNAGLFQRLCRQFSRETDGLKVAEVNGSDVGVAFFLNFSVHAMK TDHKEGEDTRILPVHYSDNYFSLVPGEEMSIKISFQVPQGVTPRLTLRGWNYHNGLHT VL" CDS join(39005747..39005892,39006562..39006700, 39006910..39007137,39007251..39007309,39008099..39008147, 39008497..39008727,39009132..39009301,39009390..39009594, 39010049..39010717,39010805..39011032,39011321..39012121) /locus_tag="TCM_026553" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30128.m008776" /codon_start=1 /product="Mannosylglycoprotein endo-beta-mannosidase isoform 1" /protein_id="EOY11332.1" /db_xref="TAIR:AT1G09010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5H7P5" /translation="MAEIGKMVLDSGWLAARSTEVKLTGTQLTTTHPPTGPTSPWMEA VVPGTVLATLVTNKTVGDPFYGLVNETIVDIADSGREYYTFWFFTKFQCKLSGTQHLD LNFRAINYSAEVYLNGHKKDLPKGMFQRHSLEVTDILNPEGTNLLAVLVYPPDHPGSI PPEGGQGGDHEIGKDVATQYVEGWDWIAPVRDRNTGIWDEVSIYVSGPVKIIDPHLVS SFFDHNTRVYLHATTELENKSAWVAECSLNIQVTTELEGSICLVEHLQTQHVSVPPGA RIQYTFPQLFFYKPNLWWPNGMGKQSLYNVSITIDVKGYGKSDSWGQLFGFRKIESHI DSATGGRLFKVNGQPIFIRGGNWILSDCLLRLSEERYKTDVKFHADMNLNMIRCWGGG LAERPEFYHYCDVYGLLVWQEFWITGDVDGRGIPVSNPNGPLDHDLFMLCARDTVKLL RNHPSLALWVGGNEQVPPPDLNTALKNDLKLHPFFENQSENAMSVEDMSTVFKDPSQY LDGTRIYIQGSLWDGFANGKGDFTDGPYEIQNPEDFFRDDYYNYGFNPEVGSVGMPVA ATIRATMPPEGWQIPLFKKLPNGYTEEVPNPIWEYHKYIPYSKPGKVHDQIELYGIPK DLDDFCLKAQLVNYIQYRALLEGWTSHMWSKYTGVLIWKTQNPWTGLRGQFYDHLLDQ TAGFYGCRCAAEPIHVQLNLATLFIEVVNTMSEELSNVAVEASVWDLEGACPYYKVFD THSFPPKKVVSIGEMNYPKSKNPKPVYFLLLKLYDVSNYHIISRNFYWLHLSGGDYKL LEPYRKKRIPLKITSKTFIKGSSYEIEMNVQNKSKKPDPKILTCKNNFVSRHGDGDFD MASLETTFEETEEKQNAGLFQRLCRQFSRETDGLKVAEVNGSDVGVAFFLNFSVHAMK TDHKEGEDTRILPVHYSDNYFSLVPGEEMSIKISFQVPQGVTPRLTLRGWNYHNGLHT VL" mRNA join(39005778..39005892,39006562..39006700, 39006910..39007137,39007251..39007309,39008099..39008147, 39008497..39008727,39009132..39009301,39009390..39009594, 39010049..39010717,39010805..39011032,39011321..39012834) /locus_tag="TCM_026553" /product="Mannosylglycoprotein endo-beta-mannosidase isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s02210.1" /inference="similar to AA sequence:ricco:30128.m008776" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc962t7; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11396t2" mRNA join(39005778..39005892,39006562..39006692, 39006910..39007137,39007251..39007309,39008099..39008147, 39008497..39008727,39009132..39009301,39009390..39009594, 39010049..39010717,39010805..39011032,39011321..39012406, 39012594..39012834) /locus_tag="TCM_026553" /product="Mannosylglycoprotein endo-beta-mannosidase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s02210.1" /inference="similar to AA sequence:ricco:30128.m008776" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc962t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11396t2" CDS join(39005870..39005892,39006562..39006700, 39006910..39007137,39007251..39007309,39008099..39008147, 39008497..39008727,39009132..39009301,39009390..39009594, 39010049..39010717,39010805..39011032,39011321..39012121) /locus_tag="TCM_026553" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30128.m008776" /codon_start=1 /product="Mannosylglycoprotein endo-beta-mannosidase isoform 4" /protein_id="EOY11334.1" /db_xref="TAIR:AT1G09010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5H7P5" /translation="MEAVVPGTVLATLVTNKTVGDPFYGLVNETIVDIADSGREYYTF WFFTKFQCKLSGTQHLDLNFRAINYSAEVYLNGHKKDLPKGMFQRHSLEVTDILNPEG TNLLAVLVYPPDHPGSIPPEGGQGGDHEIGKDVATQYVEGWDWIAPVRDRNTGIWDEV SIYVSGPVKIIDPHLVSSFFDHNTRVYLHATTELENKSAWVAECSLNIQVTTELEGSI CLVEHLQTQHVSVPPGARIQYTFPQLFFYKPNLWWPNGMGKQSLYNVSITIDVKGYGK SDSWGQLFGFRKIESHIDSATGGRLFKVNGQPIFIRGGNWILSDCLLRLSEERYKTDV KFHADMNLNMIRCWGGGLAERPEFYHYCDVYGLLVWQEFWITGDVDGRGIPVSNPNGP LDHDLFMLCARDTVKLLRNHPSLALWVGGNEQVPPPDLNTALKNDLKLHPFFENQSEN AMSVEDMSTVFKDPSQYLDGTRIYIQGSLWDGFANGKGDFTDGPYEIQNPEDFFRDDY YNYGFNPEVGSVGMPVAATIRATMPPEGWQIPLFKKLPNGYTEEVPNPIWEYHKYIPY SKPGKVHDQIELYGIPKDLDDFCLKAQLVNYIQYRALLEGWTSHMWSKYTGVLIWKTQ NPWTGLRGQFYDHLLDQTAGFYGCRCAAEPIHVQLNLATLFIEVVNTMSEELSNVAVE ASVWDLEGACPYYKVFDTHSFPPKKVVSIGEMNYPKSKNPKPVYFLLLKLYDVSNYHI ISRNFYWLHLSGGDYKLLEPYRKKRIPLKITSKTFIKGSSYEIEMNVQNKSKKPDPKI LTCKNNFVSRHGDGDFDMASLETTFEETEEKQNAGLFQRLCRQFSRETDGLKVAEVNG SDVGVAFFLNFSVHAMKTDHKEGEDTRILPVHYSDNYFSLVPGEEMSIKISFQVPQGV TPRLTLRGWNYHNGLHTVL" mRNA join(39006667..39006700,39006910..39007190, 39008099..39008727,39009132..39009301,39009390..39009594, 39010049..39010717,39010805..39011032,39011321..39012179) /locus_tag="TCM_026553" /product="Glycoside hydrolase family 2 protein isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s02210.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s02210.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc162t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11396t2" mRNA join(39006667..39006700,39006910..39007151, 39008055..39008147,39008497..39008727,39009132..39009301, 39009390..39009594,39010049..39010717,39010805..39011032, 39011321..39012179) /locus_tag="TCM_026553" /product="Mannosylglycoprotein endo-beta-mannosidase isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s02210.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s02210.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc162t15; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11396t2" CDS join(39007003..39007137,39007251..39007309, 39008099..39008147,39008497..39008727,39009132..39009301, 39009390..39009594,39010049..39010717,39010805..39011032, 39011321..39012121) /locus_tag="TCM_026553" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30128.m008776" /codon_start=1 /product="Mannosylglycoprotein endo-beta-mannosidase isoform 3" /protein_id="EOY11333.1" /db_xref="TAIR:AT1G09010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5H7P5" /translation="MFQRHSLEVTDILNPEGTNLLAVLVYPPDHPGSIPPEGGQGGDH EIGKDVATQYVEGWDWIAPVRDRNTGIWDEVSIYVSGPVKIIDPHLVSSFFDHNTRVY LHATTELENKSAWVAECSLNIQVTTELEGSICLVEHLQTQHVSVPPGARIQYTFPQLF FYKPNLWWPNGMGKQSLYNVSITIDVKGYGKSDSWGQLFGFRKIESHIDSATGGRLFK VNGQPIFIRGGNWILSDCLLRLSEERYKTDVKFHADMNLNMIRCWGGGLAERPEFYHY CDVYGLLVWQEFWITGDVDGRGIPVSNPNGPLDHDLFMLCARDTVKLLRNHPSLALWV GGNEQVPPPDLNTALKNDLKLHPFFENQSENAMSVEDMSTVFKDPSQYLDGTRIYIQG SLWDGFANGKGDFTDGPYEIQNPEDFFRDDYYNYGFNPEVGSVGMPVAATIRATMPPE GWQIPLFKKLPNGYTEEVPNPIWEYHKYIPYSKPGKVHDQIELYGIPKDLDDFCLKAQ LVNYIQYRALLEGWTSHMWSKYTGVLIWKTQNPWTGLRGQFYDHLLDQTAGFYGCRCA AEPIHVQLNLATLFIEVVNTMSEELSNVAVEASVWDLEGACPYYKVFDTHSFPPKKVV SIGEMNYPKSKNPKPVYFLLLKLYDVSNYHIISRNFYWLHLSGGDYKLLEPYRKKRIP LKITSKTFIKGSSYEIEMNVQNKSKKPDPKILTCKNNFVSRHGDGDFDMASLETTFEE TEEKQNAGLFQRLCRQFSRETDGLKVAEVNGSDVGVAFFLNFSVHAMKTDHKEGEDTR ILPVHYSDNYFSLVPGEEMSIKISFQVPQGVTPRLTLRGWNYHNGLHTVL" CDS join(39008476..39008727,39009132..39009301, 39009390..39009594,39010049..39010717,39010805..39011032, 39011321..39012121) /locus_tag="TCM_026553" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Glycoside hydrolase family 2 protein isoform 6" /protein_id="EOY11336.1" /db_xref="Phytozome:POPTR_0013s02210.1" /db_xref="TAIR:AT1G09010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5H7P5" /translation="MHLLWMQPVKIIDPHLVSSFFDHNTRVYLHATTELENKSAWVAE CSLNIQVTTELEGSICLVEHLQTQHVSVPPGARIQYTFPQLFFYKPNLWWPNGMGKQS LYNVSITIDVKGYGKSDSWGQLFGFRKIESHIDSATGGRLFKVNGQPIFIRGGNWILS DCLLRLSEERYKTDVKFHADMNLNMIRCWGGGLAERPEFYHYCDVYGLLVWQEFWITG DVDGRGIPVSNPNGPLDHDLFMLCARDTVKLLRNHPSLALWVGGNEQVPPPDLNTALK NDLKLHPFFENQSENAMSVEDMSTVFKDPSQYLDGTRIYIQGSLWDGFANGKGDFTDG PYEIQNPEDFFRDDYYNYGFNPEVGSVGMPVAATIRATMPPEGWQIPLFKKLPNGYTE EVPNPIWEYHKYIPYSKPGKVHDQIELYGIPKDLDDFCLKAQLVNYIQYRALLEGWTS HMWSKYTGVLIWKTQNPWTGLRGQFYDHLLDQTAGFYGCRCAAEPIHVQLNLATLFIE VVNTMSEELSNVAVEASVWDLEGACPYYKVFDTHSFPPKKVVSIGEMNYPKSKNPKPV YFLLLKLYDVSNYHIISRNFYWLHLSGGDYKLLEPYRKKRIPLKITSKTFIKGSSYEI EMNVQNKSKKPDPKILTCKNNFVSRHGDGDFDMASLETTFEETEEKQNAGLFQRLCRQ FSRETDGLKVAEVNGSDVGVAFFLNFSVHAMKTDHKEGEDTRILPVHYSDNYFSLVPG EEMSIKISFQVPQGVTPRLTLRGWNYHNGLHTVL" CDS join(39009171..39009301,39009390..39009594, 39010049..39010717,39010805..39011032,39011321..39012121) /locus_tag="TCM_026553" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Mannosylglycoprotein endo-beta-mannosidase isoform 5" /protein_id="EOY11335.1" /db_xref="Phytozome:POPTR_0013s02210.1" /db_xref="TAIR:AT1G09010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5H7P5" /translation="MGKQSLYNVSITIDVKGYGKSDSWGQLFGFRKIESHIDSATGGR LFKVNGQPIFIRGGNWILSDCLLRLSEERYKTDVKFHADMNLNMIRCWGGGLAERPEF YHYCDVYGLLVWQEFWITGDVDGRGIPVSNPNGPLDHDLFMLCARDTVKLLRNHPSLA LWVGGNEQVPPPDLNTALKNDLKLHPFFENQSENAMSVEDMSTVFKDPSQYLDGTRIY IQGSLWDGFANGKGDFTDGPYEIQNPEDFFRDDYYNYGFNPEVGSVGMPVAATIRATM PPEGWQIPLFKKLPNGYTEEVPNPIWEYHKYIPYSKPGKVHDQIELYGIPKDLDDFCL KAQLVNYIQYRALLEGWTSHMWSKYTGVLIWKTQNPWTGLRGQFYDHLLDQTAGFYGC RCAAEPIHVQLNLATLFIEVVNTMSEELSNVAVEASVWDLEGACPYYKVFDTHSFPPK KVVSIGEMNYPKSKNPKPVYFLLLKLYDVSNYHIISRNFYWLHLSGGDYKLLEPYRKK RIPLKITSKTFIKGSSYEIEMNVQNKSKKPDPKILTCKNNFVSRHGDGDFDMASLETT FEETEEKQNAGLFQRLCRQFSRETDGLKVAEVNGSDVGVAFFLNFSVHAMKTDHKEGE DTRILPVHYSDNYFSLVPGEEMSIKISFQVPQGVTPRLTLRGWNYHNGLHTVL" CDS join(39009171..39009301,39009390..39009594, 39010049..39010717,39010805..39011032,39011321..39012121) /locus_tag="TCM_026553" /note="encoded by transcript variant 7; alternatively spliced" /codon_start=1 /product="Mannosylglycoprotein endo-beta-mannosidase isoform 5" /protein_id="EOY11337.1" /db_xref="Phytozome:POPTR_0013s02210.1" /db_xref="TAIR:AT1G09010.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5H7P5" /translation="MGKQSLYNVSITIDVKGYGKSDSWGQLFGFRKIESHIDSATGGR LFKVNGQPIFIRGGNWILSDCLLRLSEERYKTDVKFHADMNLNMIRCWGGGLAERPEF YHYCDVYGLLVWQEFWITGDVDGRGIPVSNPNGPLDHDLFMLCARDTVKLLRNHPSLA LWVGGNEQVPPPDLNTALKNDLKLHPFFENQSENAMSVEDMSTVFKDPSQYLDGTRIY IQGSLWDGFANGKGDFTDGPYEIQNPEDFFRDDYYNYGFNPEVGSVGMPVAATIRATM PPEGWQIPLFKKLPNGYTEEVPNPIWEYHKYIPYSKPGKVHDQIELYGIPKDLDDFCL KAQLVNYIQYRALLEGWTSHMWSKYTGVLIWKTQNPWTGLRGQFYDHLLDQTAGFYGC RCAAEPIHVQLNLATLFIEVVNTMSEELSNVAVEASVWDLEGACPYYKVFDTHSFPPK KVVSIGEMNYPKSKNPKPVYFLLLKLYDVSNYHIISRNFYWLHLSGGDYKLLEPYRKK RIPLKITSKTFIKGSSYEIEMNVQNKSKKPDPKILTCKNNFVSRHGDGDFDMASLETT FEETEEKQNAGLFQRLCRQFSRETDGLKVAEVNGSDVGVAFFLNFSVHAMKTDHKEGE DTRILPVHYSDNYFSLVPGEEMSIKISFQVPQGVTPRLTLRGWNYHNGLHTVL" gene 39012883..39016794 /locus_tag="TCM_026554" /note="dbxref CacaoGD:Thecc1EG026554" mRNA join(39012883..39015125,39016139..39016794) /locus_tag="TCM_026554" /product="Tetratricopeptide repeat-like superfamily protein" /inference="similar to AA sequence:Phytozome:POPTR_0013s02200.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc221t1" CDS join(39013137..39015125,39016139..39016438) /locus_tag="TCM_026554" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein" /protein_id="EOY11338.1" /db_xref="Phytozome:POPTR_0013s02200.1" /db_xref="TAIR:AT3G05340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9MA85" /translation="MKSEWIFQKLTPHLPSCFSSILSPFRTQKLYQFPSSDAPKLALN HIGISLLLSISGKQGFVLLGSSIHASLIKNPEICKPAGGFRNSDNALLVWNSLLGMCS KCGTLTDLTKLFDEMPMKDTVSWNTMISGFLRNGEFDNGFRYFKQMRKSGFCSFDQAT LTTILSACDGVEFCCVNKMMHGLLFLNGYEREISVGNALITSYSKCGCLSSGRQVFDE MFERNVITWTAMISGLVQNELYEESLELFNEMRLGSVCPNSLTYLSSLMACSGLQALN EGRQIHGLLWKLGIQSELCIESSLMDMYSKCGSVNDAWQIFESAQDLDEVSMTVILVG LAQNGFEEQAKRFFVRMFESGIEIDPNMLSAVFGIFGEDTSLGLGKQIHSLIIKRNFG CNSYVSNGLINMYSKCGDLEESVKVFSRMSQRNSISWNSIIAAFARHGDGYRALQLYE EMRSEGIEPTDVTFLSLLHACSHVGLVEKGMELLKSMTEVHGILPRAEHYASVVDMLG RAGLLNEAKTLIEGLPFKPDVLVWQALLGACGIHGDFEMGKYAADQLLIATPESPVPY VSMANICSLRGKWKERARTIKRMKEVGVVKETGISWIETEKKVHSFVVQDRIHPQAEA VYGVLKELFRLMLDEGYVPNESFTFSYIDQDARGGCTNLDRNCSGISKADFKFQGLKL NLKQNHEISLKLPFQASNAESVTTLYSSKFKVCTVTDVLITPALANPSTRAFASRLIC LKAMPVLVLIKVSMAFGANFFF" gene 39017839..39020427 /locus_tag="TCM_026555" /note="dbxref CacaoGD:Thecc1EG026555" mRNA join(39017839..39018128,39018206..39018286, 39018520..39018557,39018834..39019000,39019137..39019220, 39019496..39019604,39019978..39020427) /locus_tag="TCM_026555" /product="Chaperone DnaJ-domain superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30128.m008775" /inference="similar to AA sequence:Phytozome:GSVIVT01000053001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc287t9" CDS join(39017868..39018128,39018206..39018286, 39018520..39018557,39018834..39019000,39019137..39019220, 39019496..39019604,39019978..39020119) /locus_tag="TCM_026555" /codon_start=1 /product="Chaperone DnaJ-domain superfamily protein" /protein_id="EOY11339.1" /db_xref="Phytozome:GSVIVT01000053001" /db_xref="TAIR:AT3G05345.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I7R6" /translation="MKSLCLCSSIPLILPLSATALDLNGRNFTNFTIRSPRRRFSPRL TVNCRSRAGEDPSPVLSSSTAFAVLGIHPNCSTAELKAAFRAKVKEYHPDVNRGGGDS DTMIRRVIQAYEILSNYSRSEIIESLFLPFHFSVVILWNIFGGSMFTVGCALCRECLD PFDSPECEAFDVFVNEVLCVGKGCPYSCVKRAPRAFTYDPSTGTARATSQGHAEDYQV QLAVGQCPRSCIHFVTPSQRIILEELLDSILDKPFDTSAEADLLYSLIVKAKFENNRY QKPKKQPKTSTKNVDWF" gene complement(39019327..39025656) /locus_tag="TCM_026556" /note="dbxref CacaoGD:Thecc1EG026556" mRNA complement(join(39019327..39019604,39019978..39020773, 39021007..39021100,39021428..39021493,39021867..39021958, 39022354..39022468,39022708..39022790,39023122..39023235, 39023325..39023412,39023522..>39023787)) /locus_tag="TCM_026556" /product="Domain of Uncharacterized protein function (DUF1995) isoform 2" /inference="alignment:exonerate- protein:2:ricco:30128.m008774" /inference="similar to AA sequence:ricco:30128.m008774" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc360t3; inference alignment:Newbler:10:TSA:cgbaP2_g08981t00001" mRNA complement(join(39020472..39020773,39021007..39021100, 39021428..39021493,39021867..39021958,39022354..39022468, 39022708..39022790,39023122..39023235,39023325..39023412, 39023522..39023839,39025154..39025656)) /locus_tag="TCM_026556" /product="Domain of Uncharacterized protein function (DUF1995) isoform 1" /inference="alignment:exonerate- protein:2:ricco:30128.m008774" /inference="similar to AA sequence:ricco:30128.m008774" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g08981t00001" CDS complement(join(39020663..39020773,39021007..39021100, 39021428..39021493,39021867..39021958,39022354..39022468, 39022708..39022790,39023122..39023235,39023325..39023412, 39023522..39023802)) /locus_tag="TCM_026556" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30128.m008774" /codon_start=1 /product="Domain of Uncharacterized protein function (DUF1995) isoform 1" /protein_id="EOY11340.1" /db_xref="TAIR:AT5G27560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PGQ2" /translation="MAAPAPSCFNCRCFASKPNSSISSTNFPLSFSCPIFSGCNGISL TRTGSSSRTHAKFEKFQGDPSEANLEDTILSSVQTQQQTVPAEDEEEDDSCLPSDLEG AVRQSGQASALFVSSGGLRAIVELLIPQLQFLDDEGAQAELWELSRIFLDTLIEETGC QKVRAIFPDAGAAALLKYLWKDAAFGFASLSDRKPVEHQDEIIVMVVPDYQMLDRVER IASELSDDPPKPLIMWNPRLISEDVGVGFNVRKLRRYFLSSFSTVYSMRPFAAGAVFR CYPGLWKVFYDDKDRPGRYLLAKELVSRPDAEELEIIYGNVDEKSKQGPSLFSQAAGI FSSLNRFMKAIAK" CDS complement(join(39020663..39020773,39021007..39021100, 39021428..39021493,39021867..39021958,39022354..39022468, 39022708..39022790,39023122..39023235,39023325..39023412, 39023522..>39023787)) /locus_tag="TCM_026556" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30128.m008774" /codon_start=1 /product="Domain of Uncharacterized protein function (DUF1995) isoform 2" /protein_id="EOY11341.1" /db_xref="TAIR:AT5G27560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PGQ2" /translation="PSCFNCRCFASKPNSSISSTNFPLSFSCPIFSGCNGISLTRTGS SSRTHAKFEKFQGDPSEANLEDTILSSVQTQQQTVPAEDEEEDDSCLPSDLEGAVRQS GQASALFVSSGGLRAIVELLIPQLQFLDDEGAQAELWELSRIFLDTLIEETGCQKVRA IFPDAGAAALLKYLWKDAAFGFASLSDRKPVEHQDEIIVMVVPDYQMLDRVERIASEL SDDPPKPLIMWNPRLISEDVGVGFNVRKLRRYFLSSFSTVYSMRPFAAGAVFRCYPGL WKVFYDDKDRPGRYLLAKELVSRPDAEELEIIYGNVDEKSKQGPSLFSQAAGIFSSLN RFMKAIAK" gene 39027262..39030517 /locus_tag="TCM_026557" /note="dbxref CacaoGD:Thecc1EG026557" mRNA join(39027262..39027467,39030139..39030517) /locus_tag="TCM_026557" /product="Uncharacterized protein" /note="quality class is weak, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS join(39027452..39027467,39030139..39030323) /locus_tag="TCM_026557" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11342.1" /translation="MCRTIGPVLLSEIPLQPLKNGQEKDKGTLVKEIELLGTEAKQRQ LKQLGAGADMNCSVNKEEGKTC" gene complement(39027625..39031857) /locus_tag="TCM_026558" /note="dbxref CacaoGD:Thecc1EG026558" mRNA complement(join(39027625..39027732,39030572..39031089, 39031754..39031857)) /locus_tag="TCM_026558" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein" /inference="alignment:exonerate- protein:2:TAIR:AT4G19003.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026637t1" /inference="similar to AA sequence:Phytozome:Sb01g004740.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.12 coverage" CDS complement(join(39027662..39027732,39030572..39031089, 39031754..39031812)) /locus_tag="TCM_026558" /note="paralog of Thecc1EG026637t1" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein" /protein_id="EOY11343.1" /db_xref="Phytozome:Sb01g004740.1" /db_xref="TAIR:AT3G28610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HV41" /translation="MNVSRLMEVAVLTAISSLLSNQLLIFKKYKLLIFKLSIFIIEDI DYSLDITKKHNNCEKDEKDEKKNRVTLLRFLNFVDGIWSKRKIIVFTTNHINKLDPTL IRKRRMNMHIELSYCTRGGFKVSAKNYLNLDPHPLFEKIGDLLKDVNMTPADISEHLI HGRVERDVNACLESLIQTLETAKEEEEEDAKKKQKQKLAIFKGISIDDEGGKFSV" mobile_element complement(39027833..39028361) /note="source:CACAO_on_E175_scaffold_1 438 968" /mobile_element_type="transposon:TIR/hAT" gene complement(39028307..39028827) /locus_tag="TCM_026559" /note="dbxref CacaoGD:Thecc1EG026559" mRNA complement(39028307..39028827) /locus_tag="TCM_026559" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:TAIR:AT4G19003.2" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS complement(39028492..39028734) /locus_tag="TCM_026559" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11344.1" /translation="MKPISLREMQKLGDFELPHFLVYLPYFTLQPVRRLVRNSYNFGR IWITAIIRLEEEFLLFSNLVIKSTLSHEARRQSSQP" mobile_element 39031041..39031090 /note="source:scaffold_2_CACTA_0244 12553 12709" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(39031091..39031366) /note="source:CACAO_M_E4753_F17_scaffold_2 7284 7571" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 39031367..39031577 /note="source:scaffold_2_CACTA_0244 12710 13387" /mobile_element_type="transposon:TIR/CACTA" gene 39031512..39036806 /locus_tag="TCM_026560" /note="dbxref CacaoGD:Thecc1EG026560" mRNA join(39031512..39032109,39032580..39032704, 39032918..39033017,39033110..39033373,39033472..39033751, 39034072..39034233,39034397..39034612,39034712..39034749, 39034928..39035091,39035181..39035294,39035459..39036806) /locus_tag="TCM_026560" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400033047" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032503t1" /inference="similar to AA sequence:ricco:30128.m008773" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc745t4" mRNA join(39031980..39032109,39032583..39032704, 39032918..39033017,39033110..39033373,39033472..39033751, 39034072..39034233,39034397..39034612,39034712..39034749, 39034928..39035091,39035181..39035294,39035459..39036433) /locus_tag="TCM_026560" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400033047" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG032503t1" /inference="similar to AA sequence:ricco:30128.m008773" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11389t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc745t4" CDS join(39032070..39032109,39032580..39032704, 39032918..39033017,39033110..39033373,39033472..39033751, 39034072..39034233,39034397..39034612,39034712..39034749, 39034928..39035091,39035181..39035294,39035459..39036226) /locus_tag="TCM_026560" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30128.m008773; paralog of Thecc1EG032503t1" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1" /protein_id="EOY11345.1" /db_xref="TAIR:AT5G27550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K4C5" /translation="MCSESCDRSVLDEVEENTNSMDEDTISNTNQEISPAQGPTLPIL QKVINLSNSIQNLKMEHEILSNQVKGITTDSFPGHDVVGTIQLLNNEYELLKKKYLDE SSERKRLYNEVIELKGNIRVFCRCRPLNQCEVVNGSSSVVEFDSSQDTELQIISSDSS KKQFKFDHVFRPEDGQEVVFAQTKPIVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPEN RGVNYRTLEELFRVSGQRGGVMRYELFVGMMEVYNEKIRDLLGENSNRPTKKLEIKQA AEGTQEVPGLVEAPVYSTEEVWELLKSGSRVRSVGATNANELSSRSHCLLRVTVRGTN LINGQKTRSHLWLVDLAGSERVGKIEVEGERLKESQFINKSLSALGDVISALASKTGH VPYRNSKLTHMLQSSLGGDCKTLMFVQISPSDADLGETICSLNFASRVRGIEGGPARK QVDLSELYKYKQMAEKLKHDEKETKKLQDNVQSLQLRLAAREHICKSLQEKVRDLENQ LAEERKTRLKQETRAFAAAASSRPSLTQAAERTKMEKKPPLGPSKLRLPLRRLTNFMP PASPMPTNRKTARIAMAASDDKENYPKTVMAPPTNTKALLKPRRVSIAVRPSTTTTQV IQPKRRVSIATLQPHSYMTTPLRSSASGFNNGGTMDRPSLVRDPRKARYSRLFSPLPE FRNPSETTPAATRSSSKFMGSPPPPAQAGSWKPRHPTVVALQRKSVVWSPLKLRGMQS QRKSSLLPLRPSALRE" CDS join(39032070..39032109,39032583..39032704, 39032918..39033017,39033110..39033373,39033472..39033751, 39034072..39034233,39034397..39034612,39034712..39034749, 39034928..39035091,39035181..39035294,39035459..39036226) /locus_tag="TCM_026560" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30128.m008773; paralog of Thecc1EG032503t1" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2" /protein_id="EOY11346.1" /db_xref="TAIR:AT5G27550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K4C5" /translation="MCSESCDRSVLDEEENTNSMDEDTISNTNQEISPAQGPTLPILQ KVINLSNSIQNLKMEHEILSNQVKGITTDSFPGHDVVGTIQLLNNEYELLKKKYLDES SERKRLYNEVIELKGNIRVFCRCRPLNQCEVVNGSSSVVEFDSSQDTELQIISSDSSK KQFKFDHVFRPEDGQEVVFAQTKPIVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENR GVNYRTLEELFRVSGQRGGVMRYELFVGMMEVYNEKIRDLLGENSNRPTKKLEIKQAA EGTQEVPGLVEAPVYSTEEVWELLKSGSRVRSVGATNANELSSRSHCLLRVTVRGTNL INGQKTRSHLWLVDLAGSERVGKIEVEGERLKESQFINKSLSALGDVISALASKTGHV PYRNSKLTHMLQSSLGGDCKTLMFVQISPSDADLGETICSLNFASRVRGIEGGPARKQ VDLSELYKYKQMAEKLKHDEKETKKLQDNVQSLQLRLAAREHICKSLQEKVRDLENQL AEERKTRLKQETRAFAAAASSRPSLTQAAERTKMEKKPPLGPSKLRLPLRRLTNFMPP ASPMPTNRKTARIAMAASDDKENYPKTVMAPPTNTKALLKPRRVSIAVRPSTTTTQVI QPKRRVSIATLQPHSYMTTPLRSSASGFNNGGTMDRPSLVRDPRKARYSRLFSPLPEF RNPSETTPAATRSSSKFMGSPPPPAQAGSWKPRHPTVVALQRKSVVWSPLKLRGMQSQ RKSSLLPLRPSALRE" gene complement(39036621..39042110) /locus_tag="TCM_026561" /note="dbxref CacaoGD:Thecc1EG026561" mRNA complement(join(39036621..39037338,39037538..39037675, 39038245..39038387,39038552..39038771,39039412..39039533, 39039633..39039860,39040300..39040768,39042014..39042110)) /locus_tag="TCM_026561" /product="Eukaryotic translation initiation factor 3E" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0006s04620.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s04620.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02646t00001" CDS complement(join(39037239..39037338,39037538..39037675, 39038245..39038387,39038552..39038771,39039412..39039533, 39039633..39039860,39040300..39040662)) /locus_tag="TCM_026561" /codon_start=1 /product="Eukaryotic translation initiation factor 3E" /protein_id="EOY11347.1" /db_xref="Phytozome:POPTR_0006s04620.1" /db_xref="TAIR:AT3G57290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M2L8" /translation="MASYDLTPRIAPNLDRHLVFPLLEFLQERQLHPDEQILKAKIEL LNKTNMVDYAMDIHKSLYHTDDVPQDMIERRVEVVARLKALEDAAAPLVTFLQNPNAV QELRADKHYNLQMLNDRYLIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNS ERSLSALWGKLAAEILMQNWDIALEELNRLKEIIDSKSFSSPLNQVQSRIWLMHWSLF IFFNHDNGRTQIIDLFNQDKYLNAIQTSAPHLLRYLATAFIVNKRRRPQFKDFIKVIQ LEQYSYKDPITEFLACVYVNYDFDGAQRKMRECEEVILNDPFLGKRVEEGNFSTVPLR EEFLENARLFIFETYCRSHQRIDMGVLAEKLNLNYEEAERWIVNLIRNSKLDAKIDSE TGAVTMEPNRPNVYEQLIDHTKALQGRTYKLVSQILEHVQAQPAR" mobile_element 39041420..39041464 /note="source:scaffold_9_CACTA_0946 17599 17643" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(39041441..39041487) /note="source:CACAO_on_E69_scaffold_9 964 1010" /mobile_element_type="transposon:TIR/hAT" mobile_element 39041492..39042403 /note="source:scaffold_4_CACTA_0511 12924 13834" /mobile_element_type="transposon:TIR/CACTA" gene 39042205..39046477 /locus_tag="TCM_026562" /note="dbxref CacaoGD:Thecc1EG026562" mRNA join(39042205..39042392,39044757..39044959, 39045072..39045130,39045328..39046477) /locus_tag="TCM_026562" /product="Cyclin family isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s02350.1" /inference="similar to AA sequence:Phytozome:POPTR_0005s03620.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.40 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00532t00002" CDS join(39042360..39042392,39044757..39044959, 39045072..39045130,39045328..39046127) /locus_tag="TCM_026562" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Cyclin family isoform 1" /protein_id="EOY11348.1" /db_xref="Phytozome:POPTR_0005s03620.1" /db_xref="TAIR:AT3G05330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I7T2" /translation="MSGVMWHHTFKGFLFFFLGLWGFCSLFGIVKVEQCMARLQELQY TVAGGTKVISGVSLSPRSTRGYLRTSLRCKQESLRIKNATPRKSLVGKFPASAGGEWR RMSLPAMLVGETVGEILQASQFAREILAAVDDKTKKKTGVAEDPKTPLTEHTKRRAQP ENTELRARRKKEKQNKLQLIRTESDSPSLQRARSRINFKVSSPPKFREFDKENNRHMA NRVSPRNRPWAKKAVLFPNPLFSSTPASQQQKFCKTRSPVIARNRQAQTPHKFLIKSP PSASKFQVKIKSPPVVSLSPTRSTNISKRSPKLSAASKLRRSFSPSRLANRLVSPLKS RKSFQKSDGPMSGLKQRPVLLPIRFSTGRI" mobile_element complement(39042407..39042448) /note="source:scaffold_5_CACTA_0584 1511 1551" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(39042957..39043080) /note="source:CACAO_Again_on_E207_scaffold_9 315 438" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(39042987..39043104) /note="source:scaffold_4_CACTA_0482 7601 7729" /mobile_element_type="transposon:TIR/CACTA" mobile_element 39042990..39043089 /note="source:scaffold_3_CACTA_0396 892 993" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(39043082..39043108) /note="source:scaffold_1_CACTA_0032 2366 2490" /mobile_element_type="transposon:TIR/CACTA" mobile_element 39043097..39043108 /note="source:scaffold_9_CACTA_0942 5244 5353" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(39043109..39043207) /note="source:CACAO_Mariner_E220_scaffold_9 9014 9111" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element 39044370..39044424 /note="source:scaffold_9_CACTA_0943 9078 9134" /mobile_element_type="transposon:TIR/CACTA" mRNA join(39044410..39044712,39044817..39044959, 39045072..39045130,39045328..39046362) /locus_tag="TCM_026562" /product="Cyclin family isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s02350.1" /inference="similar to AA sequence:Phytozome:POPTR_0005s03620.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc98t1; inference alignment:Newbler:10:TSA:cgbaP1_g00532t00002" CDS join(39044629..39044712,39044817..39044959, 39045072..39045130,39045328..39046127) /locus_tag="TCM_026562" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Cyclin family isoform 2" /protein_id="EOY11349.1" /db_xref="Phytozome:POPTR_0005s03620.1" /db_xref="TAIR:AT3G05330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I7T2" /translation="MVARTPPKQRKIMVAPLNPVLLRETVKKVEQCMARLQELQYTVA GGTKVISGVSLSPRSTRGYLRTSLRCKQESLRIKNATPRKSLVGKFPASAGGEWRRMS LPAMLVGETVGEILQASQFAREILAAVDDKTKKKTGVAEDPKTPLTEHTKRRAQPENT ELRARRKKEKQNKLQLIRTESDSPSLQRARSRINFKVSSPPKFREFDKENNRHMANRV SPRNRPWAKKAVLFPNPLFSSTPASQQQKFCKTRSPVIARNRQAQTPHKFLIKSPPSA SKFQVKIKSPPVVSLSPTRSTNISKRSPKLSAASKLRRSFSPSRLANRLVSPLKSRKS FQKSDGPMSGLKQRPVLLPIRFSTGRI" gene complement(39045320..39051342) /locus_tag="TCM_026563" /note="dbxref CacaoGD:Thecc1EG026563" mRNA complement(join(39045320..39046947,39047347..39047414, 39047505..39047845,39047936..39048130,39048222..39048414, 39048507..39048556,39048643..39048702,39048799..39048838, 39048949..39049049,39049125..39049206,39049522..39049604, 39049729..39049806,39049919..39049999,39050074..39050184, 39050273..39050338,39050670..39050711,39050948..39051342)) /locus_tag="TCM_026563" /product="NPK1-related protein kinase 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s02360.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020556t1" /inference="similar to AA sequence:ricco:30128.m008771" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11425t3" CDS complement(join(39046844..39046947,39047347..39047414, 39047505..39047845,39047936..39048130,39048222..39048414, 39048507..39048556,39048643..39048702,39048799..39048838, 39048949..39049049,39049125..39049206,39049522..39049604, 39049729..39049806,39049919..39049999,39050074..39050184, 39050273..39050338,39050670..39050711,39050948..39051241)) /locus_tag="TCM_026563" /note="dbxref ricco:30128.m008771; paralog of Thecc1EG020556t1" /codon_start=1 /product="NPK1-related protein kinase 1" /protein_id="EOY11350.1" /db_xref="TAIR:AT1G09000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22040" /translation="MQDLFGSVRRSLVFRTTPDNINNTQENSPPIPTTANAFVEKINS CIRKSRVFSKPSSPSPSPPPAIRWRKGELIGSGAFGRVYMGMNLDSGELLAVKEVLIA ENSASKEKAQAHVRELEEEVKLLKNLSHPNIVRYLGTVREEETLNILLEFVPGGSISS LLGKFGPFPEAVIRTYTTQLLLGLEYLHNNGIMHRDIKGANILVDNKGSIKLADFGAS KQVVELATVSGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQ YQEVAALFYVGTTKSHPPIPENLSIEAKDFLLKCLQKEPELRPAASELLKHPFVTGES QESNPILHASVMENSEITSSLHATNHEGSQVSTCPDSVDICNLGSLNCSNTFVEKFSE SKDSWRINCSEDDMCQIDKDHLGLCSSSMLDNVNKSSDPLCEPSHDWKSKFGEDPETV PVGGPTTCGKGGNDYSFTCGPSLSEDDDELTESKIRAFLDEKALELKKLQTPLYEEFY NSLNVASSPSFIENKRDETPPNYLKLPPKSRSPSRGPIGTPSSAADAIGTGSPGSNNS RRVSNIGHASDQTSQDNSSPQLSDWKGLLVDGQPEPSSPSVISSERHRKWKEELDQEL DRKREMLRQAGVGGKTSSPKDRALNRQRDRTRFASPGK" gene complement(39052370..39055831) /locus_tag="TCM_026564" /note="dbxref CacaoGD:Thecc1EG026564" mRNA complement(join(39052370..39053444,39053775..39054893, 39055782..39055831)) /locus_tag="TCM_026564" /product="Plant glycogenin-like starch initiation protein 4, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g29570.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026565t1" /inference="similar to AA sequence:Phytozome:GSVIVT01000046001" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1984t1" CDS complement(join(39052510..39053444,39053775..39054507)) /locus_tag="TCM_026564" /note="paralog of Thecc1EG026565t1" /codon_start=1 /product="Plant glycogenin-like starch initiation protein 4, putative" /protein_id="EOY11351.1" /db_xref="Phytozome:GSVIVT01000046001" /db_xref="TAIR:AT1G54940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A6YTD3" /translation="MAAKFLNSNQKLFILSLIVLSLSVIILVAFFGSKYNIFDTVKPQ IERQVFTYPRWLDLIKEEIDGKKIKVGLVNFGDEEAAYRVHGSGVNTVHVRFDRVSEA SKWVDFFPEWIDEDQKSGPPTCPEIPMPPLEDYWDLDVVVAKVPCDGWTGKSGLKDVF RLQVNLVVANLLVRSGWVMEPDVKRAVYAVFIGNCGPMPEIFRCDDLSRKAGDHWVYK PELRRLKQKVVMPLGSCQIAQPYGITGKEAWRYYSLPKEKRKKLKYSTFNQREAYVTI LHSSEAYVCGAIALAQSIILSNSTRDLLLLHDENISPKSLTGLRAAGWKTRQIDRIRS PFAQKGSYNEWNYSKLRIWLLTWYDKVVFIDADILVLKNMDSLFIYPPLSAAGNDQTL FNSGIMVVEPSLCMFEDLMVKSFKVDSYNGGDQGFLNEVFTWWHRLPSKVNFLKIFQR NGSREDIPDDLSAIHYLGLKPWMCYRDYDCNWDMKERQIFASDQAHEKWWRVYDAMPE NLQHYCGLTENMDWRIKKWRKIAKNLRLPDEHWRISVTDPRQYNLVQ" gene complement(39056474..39059041) /locus_tag="TCM_026565" /note="dbxref CacaoGD:Thecc1EG026565" mRNA complement(join(39056474..39057655,39057897..39059041)) /locus_tag="TCM_026565" /product="Plant glycogenin-like starch initiation protein 5, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000046001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026564t1" /inference="similar to AA sequence:Phytozome:GSVIVT01000046001" /note="quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.48 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11391t3" CDS complement(join(39056685..39057655,39057897..39058632)) /locus_tag="TCM_026565" /note="paralog of Thecc1EG026564t1" /codon_start=1 /product="Plant glycogenin-like starch initiation protein 5, putative" /protein_id="EOY11352.1" /db_xref="Phytozome:GSVIVT01000046001" /db_xref="TAIR:AT1G54940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A6YTD3" /translation="MAVQSRSDYPKLFTLSLILLPSSLMILVVFFGSKNDISDTVKQA QTDSQVFTYPRWFDLVREEIDGKKIKVGLVNFDDEEPAYKMPGSVVSTVHVRFDHVSK AIKWGDFFPEWIDEDQKFSLPLCPAIPMPRLEDYRDLDVVVARVPCDGWTGKSGLRDV FRLQVNLVVANLLVESGWVMEPDVKRVVYAVFVGSCGPMSEIFRCDDLLRKAGDHWVY KPELRRLKQKVLMTLGSCQIAQPYAKTGKEVWRYYLAEDKVKKQEYSVFHQKEAYVTI LHSSEAYVCGAIALAQSIILSNSTRDPFFNLLSNSTRDLLLLHDENISPKSLTGLRAA GWKTRQIERIRSPFAKKGSYNEWNYSKLRIWLLTWYDKVIFIDADILVLKNMDDLFVY PPLSAAGNYDKTLFNSGIMVVEPSLCMFEDLMMKSFEVGSHNGGDQGFLNEVFTWWHR LPSKVNFLKIFQRNGSRQNIRDDLSAIHYLGLKPWMCYRDYDCNWDVKEKQIFASDKA HEKWWQVYDAMPENLQQYCGLTENMDCTIKKWRKIASYLRLPDEHWRIDVKDPRQYNL VQ" gene complement(39058943..39062312) /locus_tag="TCM_026566" /note="dbxref CacaoGD:Thecc1EG026566" mRNA complement(join(39058943..39059350,39059450..39059528, 39060180..39060344,39060688..39060736,39060797..39060968, 39061364..39061446,39061513..39061555,39061942..39061985, 39062257..39062312)) /locus_tag="TCM_026566" /product="ARM repeat superfamily protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041735t1" /inference="similar to AA sequence:Phytozome:POPTR_0001s23250.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.27 coverage" CDS complement(join(39059237..39059350,39059450..39059528, 39060180..39060344,39060688..39060736,39060797..39060968, 39061364..39061446,39061513..39061555,39061942..39061974)) /locus_tag="TCM_026566" /note="paralog of Thecc1EG041735t1" /codon_start=1 /product="ARM repeat superfamily protein" /protein_id="EOY11353.1" /db_xref="Phytozome:POPTR_0001s23250.1" /db_xref="TAIR:AT5G37290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HFW7" /translation="MKIPYLEPSTKLVEFGIGNISNSCVDPANGAIITQCDGIPLAIQ CLSSPVINTVNYALGAFYYLCNKANREEILKPEVVDVIERYAASQNVSFSNLAKAFLD KHVSKDKYESIDNLILTCTATRAFWSKLQNLQKTDIGALIHQERSIQHSVLPECIQVF ARPGNVGIPLYRLAMVGGCLTIPLAFLPFAHFFHLLLKPVGQPGPVAQAGVVLGPLVL CRIHDIRESFIQPTYFLGLLSVFLILV" gene 39062626..39064569 /locus_tag="TCM_026567" /note="dbxref CacaoGD:Thecc1EG026567" mRNA join(39062626..39062749,39063166..39063578, 39064050..39064569) /locus_tag="TCM_026567" /product="Cyclin family protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g42390.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004384t1" /inference="similar to AA sequence:ricco:30128.m008769" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.46 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02179t00002" CDS join(39062696..39062749,39063166..39063578, 39064050..39064338) /locus_tag="TCM_026567" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30128.m008769; paralog of Thecc1EG004384t1" /codon_start=1 /product="Cyclin family protein, putative isoform 1" /protein_id="EOY11354.1" /db_xref="TAIR:AT3G05327.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HQ58" /translation="MNLSNLEAFYPASSTVPQLWLSMGAMMIKGKAMGSDLYACLGID KSGNWVPGAPRVLSLLSSILERSIQRNEKLVGGSRRMDVVTIFHGTKAPALGIRQYVE RIFKYSKCSNSCFVVALVYVDRFLERMGAHLTSLNVHRLLITSFMVAAKFIDDQRICR CYNNAYYAKVGGVSTEEMNELEMKLLFSLDFRLHVTTEVFNKYCLKIEREGGVAYPPS QQIQGHLLGGRPKKDENKRGPKLPGHRGRACST" mRNA join(<39063235..39063578,39064062..39064383) /locus_tag="TCM_026567" /product="Cyclin family protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g42390.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004384t1" /inference="similar to AA sequence:ricco:30128.m008769" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is medium, protein is partial5; similar to RNA sequence, EST 0.71 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02179t00002; inference alignment:Newbler:10:TSA:cgbaL_g02179t00002" CDS join(<39063235..39063578,39064062..39064338) /locus_tag="TCM_026567" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30128.m008769; paralog of Thecc1EG004384t1" /codon_start=1 /product="Cyclin family protein, putative isoform 2" /protein_id="EOY11355.1" /db_xref="TAIR:AT3G05327.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HQ58" /translation="GIDKSGNWVPGAPRVLSLLSSILERSIQRNEKLVGGSRRMDVVT IFHGTKAPALGIRQYVERIFKYSKCSNSCFVVALVYVDRFLERMGAHLTSLNVHRLLI TSFMVAAKFIDDQCYNNAYYAKVGGVSTEEMNELEMKLLFSLDFRLHVTTEVFNKYCL KIEREGGVAYPPSQQIQGHLLGGRPKKDENKRGPKLPGHRGRACST" gene complement(39063950..39070935) /locus_tag="TCM_026568" /note="dbxref CacaoGD:Thecc1EG026568" mRNA complement(join(39063950..39064912,39065320..39065506, 39065908..39066058,39066326..39066438,39066592..39066661, 39066739..39066950,39067346..39067427,39067777..39067832, 39067946..39068014,39068422..39068676,39068908..39069084, 39069315..39069464,39069893..39070025, 39070321..>39070522)) /locus_tag="TCM_026568" /product="Mitochondrial Rho GTPase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s03670.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004396t1" /inference="similar to AA sequence:Phytozome:GSVIVT01000044001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04224t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11518t6" mRNA complement(join(39064052..39064912,39065320..39065506, 39065908..39066058,39066326..39066438,39066592..39066661, 39066739..39066950,39067346..39067427,39067777..39067832, 39067946..39068014,39068422..39068676,39068908..39069084, 39069315..39069464,39069893..39070025,39070321..39070545, 39070742..39070931)) /locus_tag="TCM_026568" /product="Mitochondrial Rho GTPase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s03670.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004396t1" /inference="similar to AA sequence:Phytozome:GSVIVT01000044001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11518t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11518t6" CDS complement(join(39064839..39064912,39065320..39065506, 39065908..39066058,39066326..39066438,39066592..39066661, 39066739..39066950,39067346..39067427,39067777..39067832, 39067946..39068014,39068422..39068676,39068908..39069084, 39069315..39069464,39069893..39070025,39070321..39070526)) /locus_tag="TCM_026568" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG004396t1" /codon_start=1 /product="Mitochondrial Rho GTPase isoform 1" /protein_id="EOY11356.1" /db_xref="Phytozome:GSVIVT01000044001" /db_xref="TAIR:AT5G27540.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7U1Z9" /translation="MAKSLNPEGKTGVRIVVAGDRGTGKSSLIVTAAADTFAANVPRL LPPTRLPEDFYPDRVPITIIDTSSNPEDRGKLAAELKRADAVVLTYACDQPETLNRLS TFWLPELRQLEVKVPVIVVGCRLDLRDELQQVSLEQVMSPIMQQFREIETCIECSAYK HIQIPEVFYYAQKAVLHPTGPLFDQESQTLKPRCVRALKRIFILCDHDRDGALSDAEL NDFQVKCFNAPLQPSEIVGVKRVVQDKLVEGVNERGLTLTGFLFLHALFIEKGRLETT WTVLRKFGYNNDIKLSDDLIPHSSFKRAPDQSVELTNEAIEFLKGVYELFDSDLDNNL RPIEVEDVFSTAPESPWNDAPYKDAAEKTALGGLSLDAFLSEWALMTLLDPARSVENL IYIGYPGDPSSAIRVTRRRRLDRKKQQSERNVFQCFLLGPTNAGKSALMNSFLGRPYS DSYSPTTDERYAVNVVELPGGIKKTLVLREIPEDGVRKLLSTKDSLAACDIAVFVHDS SDESSWKRATELLVDVAGHGEDTGYEVPCLIVAAKDDLDSFPMAIQDSTRVSQDMGID APIPISSKLGDFNNIFRKIVNAAEYPHLSIPETEAGRSRKQYHRLINRSLMFVSVGAA VAIVGLAAYRVYAARKNASS" CDS complement(join(39064839..39064912,39065320..39065506, 39065908..39066058,39066326..39066438,39066592..39066661, 39066739..39066950,39067346..39067427,39067777..39067832, 39067946..39068014,39068422..39068676,39068908..39069084, 39069315..39069464,39069893..39070025, 39070321..>39070520)) /locus_tag="TCM_026568" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG004396t1" /codon_start=1 /product="Mitochondrial Rho GTPase isoform 2" /protein_id="EOY11357.1" /db_xref="Phytozome:GSVIVT01000044001" /db_xref="TAIR:AT5G27540.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7U1Z9" /translation="KSLNPEGKTGVRIVVAGDRGTGKSSLIVTAAADTFAANVPRLLP PTRLPEDFYPDRVPITIIDTSSNPEDRGKLAAELKRADAVVLTYACDQPETLNRLSTF WLPELRQLEVKVPVIVVGCRLDLRDELQQVSLEQVMSPIMQQFREIETCIECSAYKHI QIPEVFYYAQKAVLHPTGPLFDQESQTLKPRCVRALKRIFILCDHDRDGALSDAELND FQVKCFNAPLQPSEIVGVKRVVQDKLVEGVNERGLTLTGFLFLHALFIEKGRLETTWT VLRKFGYNNDIKLSDDLIPHSSFKRAPDQSVELTNEAIEFLKGVYELFDSDLDNNLRP IEVEDVFSTAPESPWNDAPYKDAAEKTALGGLSLDAFLSEWALMTLLDPARSVENLIY IGYPGDPSSAIRVTRRRRLDRKKQQSERNVFQCFLLGPTNAGKSALMNSFLGRPYSDS YSPTTDERYAVNVVELPGGIKKTLVLREIPEDGVRKLLSTKDSLAACDIAVFVHDSSD ESSWKRATELLVDVAGHGEDTGYEVPCLIVAAKDDLDSFPMAIQDSTRVSQDMGIDAP IPISSKLGDFNNIFRKIVNAAEYPHLSIPETEAGRSRKQYHRLINRSLMFVSVGAAVA IVGLAAYRVYAARKNASS" mRNA complement(join(39065327..39065506,39065908..39066058, 39066326..39066349,39066738..39066950,39067346..39067427, 39067777..39067832,39067946..39068014,39068422..39068676, 39068908..39069084,39069315..39069464,39069893..39070025, 39070321..39070545,39070742..39070935)) /locus_tag="TCM_026568" /product="Mitochondrial Rho GTPase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s03670.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004396t1" /inference="similar to AA sequence:Phytozome:GSVIVT01000044001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc291t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11518t6" mobile_element complement(39065704..39065809) /note="source:INTACT554_F250_scaffold_7-int 602 696" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(39066329..39066349,39066738..39066950, 39067346..39067427,39067777..39067832,39067946..39068014, 39068422..39068676,39068908..39069084,39069315..39069464, 39069893..39070025,39070321..39070526)) /locus_tag="TCM_026568" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG004396t1" /codon_start=1 /product="Mitochondrial Rho GTPase isoform 3" /protein_id="EOY11358.1" /db_xref="Phytozome:GSVIVT01000044001" /db_xref="TAIR:AT5G27540.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7U1Z9" /translation="MAKSLNPEGKTGVRIVVAGDRGTGKSSLIVTAAADTFAANVPRL LPPTRLPEDFYPDRVPITIIDTSSNPEDRGKLAAELKRADAVVLTYACDQPETLNRLS TFWLPELRQLEVKVPVIVVGCRLDLRDELQQVSLEQVMSPIMQQFREIETCIECSAYK HIQIPEVFYYAQKAVLHPTGPLFDQESQTLKPRCVRALKRIFILCDHDRDGALSDAEL NDFQVKCFNAPLQPSEIVGVKRVVQDKLVEGVNERGLTLTGFLFLHALFIEKGRLETT WTVLRKFGYNNDIKLSDDLIPHSSFKRAPDQSVELTNEAIEFLKGVYELFDSDLDNNL RPIEVEDVFSTAPESPWNDAPYKDAAEKTALGGLSLDAFLSEWALMTLLDPARSVENL IYIGYPGDPSSAIRVTRRRRLDRKKQQSERNVFQCFLLGPTNAGKSALMNSFLGRHSS ICP" mobile_element 39072754..39072884 /note="source:CACAO_on_SS_E42_scaffold_2 17256 17392" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(39075369..39075474) /note="source:scaffold_1_CACTA_0008 1354 1457" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(39075382..39075901) /note="source:CACAO_M_S_E5285_F300_scaffold_1 17310 17797" /mobile_element_type="retrotransposon:LTR/Copia" gene 39076226..39080094 /locus_tag="TCM_026569" /note="dbxref CacaoGD:Thecc1EG026569" mRNA join(39076226..39076438,39077970..39078201, 39078895..39079041,39079168..39079325,39079414..39079676, 39079781..39080094) /locus_tag="TCM_026569" /product="Peroxisomal adenine nucleotide carrier 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400049845" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020555t1" /inference="similar to AA sequence:TAIR:AT3G05290.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g08342t00001" CDS join(39076296..39076438,39077970..39078201, 39078895..39079041,39079168..39079325,39079414..39079676, 39079781..39079875) /locus_tag="TCM_026569" /note="paralog of Thecc1EG020555t1" /codon_start=1 /product="Peroxisomal adenine nucleotide carrier 1" /protein_id="EOY11359.1" /db_xref="TAIR:AT3G05290.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9MA90" /translation="MGVDLESLSEATSGAIGSLLSTTILYPLDTCKTKYQAEVQAHGQ QKYRNLSDVLWEAISTRQILSLYQGLGTKNLQSFIAQFVYFYGYSYFKRLYLEKSGSK SIGTKANLILAAAAGACTAIVTQPLDTASSRMQTSAFGKSKGLWKTLTEGTLSDAFDG LGISLLLTSNPAIQYTVFDQLKQRLLKQKVKEAGKGSSPVVLSAFTAFLLGAASKSVA TFLTYPAIRCKVMIQAADPDDDDRTKKDQPRSRKTLSGVIYAIWRREGTLGFFKGLQA QITKTVLSSALLLMIKEKITATTWVLILAIRRYLLLTRGSNSLKHSCSNIGALLGKHQ SELDLAASSSK" mobile_element complement(39080832..39080876) /note="source:scaffold_1_CACTA_0031 13 57" /mobile_element_type="transposon:TIR/CACTA" gene 39080844..39086009 /locus_tag="TCM_026570" /note="dbxref CacaoGD:Thecc1EG026570" mRNA join(39080844..39080977,39081090..39081129, 39081372..39081452,39081866..39082052,39082430..39082697, 39083065..39083232,39083532..39083601,39083756..39083851, 39085556..39086009) /locus_tag="TCM_026570" /product="Integral membrane Yip1 family protein" /inference="alignment:exonerate- protein:2:TAIR:AT5G27490.1" /inference="similar to AA sequence:TAIR:AT5G27490.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc243t7" CDS join(39080921..39080977,39081090..39081129, 39081372..39081452,39081866..39082052,39082430..39082697, 39083065..39083232,39083532..39083540) /locus_tag="TCM_026570" /codon_start=1 /product="Integral membrane Yip1 family protein" /protein_id="EOY11360.1" /db_xref="TAIR:AT5G27490.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NPD4" /translation="MMSGGYTSIDNQKVSGSVPAVSDPGHVTVKFADSSLQTFPPTGA QGKISSGAQPPRDADDTFSRPAGGSDEPQGSGWFRTFTVGAYKPYFDVDTSDVLDRLK ESLFPFRGTFTEKTATNPDLYGPFWICTTLIFVAASIGTFVTYIAHKLKKKEWDYDIN LVTWSAGVFYGYVTVVPLALYVVLKYFSAPSGLVQLFCLYGYSLFVFIPALCLSVVPL EIFRWVIAGVAGFMSATFVALNLRAHIKSAGERWFLIVASIFLLQLALAVK" gene complement(39087148..39093811) /locus_tag="TCM_026571" /note="dbxref CacaoGD:Thecc1EG026571" mRNA complement(join(39087148..39088214,39088769..39089107, 39089198..39089414,39089898..39090062,39090617..39090685, 39090782..39091276,39091567..39091635,39091735..39092019, 39092370..39092594,39092788..39093811)) /locus_tag="TCM_026571" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000040001" /inference="similar to AA sequence:Phytozome:POPTR_0013s02450.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11493t4" mRNA complement(join(39087565..39088214,39090617..39090685, 39090782..39091276,39091567..39091635,39091735..39092019, 39092370..39092594,39092788..39093684)) /locus_tag="TCM_026571" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000040001" /inference="similar to AA sequence:Phytozome:POPTR_0013s02450.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc735t3_C1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11493t4" CDS complement(join(39088099..39088214,39088769..39089107, 39089198..39089414,39089898..39090062,39090617..39090685, 39090782..39091276,39091567..39091635,39091735..39092019, 39092370..39092594,39092788..39093633)) /locus_tag="TCM_026571" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY11361.1" /db_xref="Phytozome:POPTR_0013s02450.1" /db_xref="TAIR:AT1G54920.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I7W6" /translation="MAENDDEEGFADFKFVSSSSPPTTATITANDDDDWGDFMNSSNA ISRTESLPVNQFHFDPFPNSSPPTQPGSAPSRVESVKNHWAKLNGALPLSIFGEEEKD EEGSGAVDSGFNGATATFSCPKKDGSLKGKGSDLNDLLADLYKQSERGKEGNAFGSGL DVKKEVDMNPKVETWNWNGLNLELNGSVLKVDGLDLSVNASALDKKEENLESNGAGME RKEGNLGLNGLDPGSNGPVLHQNGSMLDSNGGSSDLVYEEEEDDDGWEFRGAESKAEA GVENVKSDQSEPISHFSVTALIWDPLSTNVSGLNSNDNGVNSNVSRLNSSLVDENEEF GDDDGWDFKTAESEARSGTGSTKVDGREQENPKGVEFGAGFGNGVNGPSDLIGTPGGI SNKPGEWDVGFSFAPSFGTQSLQNDTKNGVISSSIDNNIDSDEMSWAFKDTIPGNGSK TKEEPNVADASSSGVEDLLFDSHIQGNEERVEKHKGALPLSIFGDAEPEPNDSLRYED VSIHKPTSPITVMEDTHSNISINDLISSLYSQAEKNASLNHISNPSEDGLLSSQTVVG SNLVNDDSDFNDDSWEFKGADSGTQGENQNSLHGYGDSYEKYSTKTWLDEYVDFYSKM ATELCFVALIHLDNMKKDQSIATPSREDAEVQAIEEEIQGLYNELYKEGILSKEVASE NLQSISIDLGEFAKILQGKKLQVLESEYHLSEKLLLAEKDLRTATGLLKHAASTLKIL KLGSFEDQSNYISTWLTILSVCALELKHGALIWKQSLQKNIHSQLLSKSQGRQYILAL GEIYRVVKIVESSTKLYKPWIMFSSEHPTNILSLVRECSTLWSSSGLEEALQSLSDPT DLKYDIEALLGSIQSIHDLDAHELYKQVFSGQESTCCLSGLGAGSVPGMKMVVWDGRH YFVTIVNMWANLISRDPPKLPHIHASK" CDS complement(join(39088209..39088214,39090617..39090685, 39090782..39091276,39091567..39091635,39091735..39092019, 39092370..39092594,39092788..39093633)) /locus_tag="TCM_026571" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY11362.1" /db_xref="Phytozome:POPTR_0013s02450.1" /db_xref="TAIR:AT1G54920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I7W6" /translation="MAENDDEEGFADFKFVSSSSPPTTATITANDDDDWGDFMNSSNA ISRTESLPVNQFHFDPFPNSSPPTQPGSAPSRVESVKNHWAKLNGALPLSIFGEEEKD EEGSGAVDSGFNGATATFSCPKKDGSLKGKGSDLNDLLADLYKQSERGKEGNAFGSGL DVKKEVDMNPKVETWNWNGLNLELNGSVLKVDGLDLSVNASALDKKEENLESNGAGME RKEGNLGLNGLDPGSNGPVLHQNGSMLDSNGGSSDLVYEEEEDDDGWEFRGAESKAEA GVENVKSDQSEPISHFSVTALIWDPLSTNVSGLNSNDNGVNSNVSRLNSSLVDENEEF GDDDGWDFKTAESEARSGTGSTKVDGREQENPKGVEFGAGFGNGVNGPSDLIGTPGGI SNKPGEWDVGFSFAPSFGTQSLQNDTKNGVISSSIDNNIDSDEMSWAFKDTIPGNGSK TKEEPNVADASSSGVEDLLFDSHIQGNEERVEKHKGALPLSIFGDAEPEPNDSLRYED VSIHKPTSPITVMEDTHSNISINDLISSLYSQAEKNASLNHISNPSEDGLLSSQTVVG SNLVNDDSDFNDDSWEFKGADSGTQGENQNSLHGYGDSYEKYSTKTWLDEYVDFYSKM ATELCFVALIHLDNMKKDQSIATPSREDAEVQAIEEEIQA" gene complement(39094470..39096491) /locus_tag="TCM_026572" /note="dbxref CacaoGD:Thecc1EG026572" mRNA complement(join(39094470..39095300,39096132..39096491)) /locus_tag="TCM_026572" /product="Glycoprotein membrane precursor GPI-anchored, putative" /inference="alignment:exonerate- protein:2:ricco:30128.m008763" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020552t1" /inference="similar to AA sequence:ricco:30128.m008763" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g14971t00001" CDS complement(join(39094816..39095300,39096132..39096216)) /locus_tag="TCM_026572" /note="dbxref ricco:30128.m008763; paralog of Thecc1EG020552t1" /codon_start=1 /product="Glycoprotein membrane precursor GPI-anchored, putative" /protein_id="EOY11363.1" /db_xref="TAIR:AT1G54860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZVL0" /translation="MASIKPSHHFFFVVVLAIFLLSPPVLSDDVEDQLLQGLNSFRTS MNIPSFSKNKNAHCAAEQIADDLEDQPCSNSNNETRLSDHPNAISKCHIDPNTTSDAI VLPVCVPDLVPTLVLTNFTRTHFSKYMNDSSLTGIGVSSQDDWMVVVLATNTPSGSLA SGACSWHAKVGLGHYLVLSLLGLVLCLVQ" gene 39097456..39099202 /locus_tag="TCM_026573" /note="dbxref CacaoGD:Thecc1EG026573" mRNA join(39097456..39097697,39098039..39098394, 39098529..39099202) /locus_tag="TCM_026573" /product="NAD(P)-binding Rossmann-fold superfamily protein" /inference="alignment:exonerate- protein:2:TAIR:AT3G05260.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020548t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s02480.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2624t1" CDS join(39097572..39097697,39098039..39098394, 39098529..39098910) /locus_tag="TCM_026573" /note="paralog of Thecc1EG020548t1" /codon_start=1 /product="NAD(P)-binding Rossmann-fold superfamily protein" /protein_id="EOY11364.1" /db_xref="Phytozome:POPTR_0013s02480.1" /db_xref="TAIR:AT1G54870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FZ42" /translation="MASGGQQQFPPQKQSTQPGKEHVMNPIPQFTSPDYKPSNKFQLL EVILGLAICHCFIREGATVAFTYVKSQEDKDAQDTLQMLKKEKTPDSKDPMAIAADLG FDENCKKVVDEVVNAYGRINILVNNAAEQYKASSVEDIDEERLERVFRTNIFSYFFLT RHALKHMKEGSSIINTTSINAYKGNDKLLDYTATKGAIVAFTRGLSLQLVKRGIRVNG VAPGPIWTPLIPASFDEEETSKFGSEVPMQRAGQPIEVAPSYVFLACNHCSSYISGQV LHPNGGAIVNA" gene complement(39099283..39107286) /locus_tag="TCM_026574" /note="dbxref CacaoGD:Thecc1EG026574" mRNA complement(join(39099283..39100253,39100644..39101057, 39101636..39101889,39101970..39102213,39103268..39103415, 39105796..39105801)) /locus_tag="TCM_026574" /product="Mevalonate kinase isoform 1" /inference="alignment:exonerate- protein:2:ricco:30128.m008760" /inference="similar to AA sequence:Phytozome:POPTR_0013s02490.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc479t13_C2" mRNA complement(join(39099746..39100253,39100644..39101057, 39101636..39101889,39101970..39102213,39103268..39103415, 39105796..39105882,39107142..39107286)) /locus_tag="TCM_026574" /product="Mevalonate kinase isoform 1" /inference="alignment:exonerate- protein:2:ricco:30128.m008760" /inference="similar to AA sequence:Phytozome:POPTR_0013s02490.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc479t7_C2; alternateUTRof:Thecc1EG026574t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc479t13_C2" CDS complement(join(39100135..39100253,39100644..39101057, 39101636..39101889,39101970..39102213,39103268..39103394)) /locus_tag="TCM_026574" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Mevalonate kinase isoform 1" /protein_id="EOY11365.1" /db_xref="Phytozome:POPTR_0013s02490.1" /db_xref="TAIR:AT5G27450.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2HTL9" /translation="MEVTARAPGKIILAGEHAVVHGYTAVASSIDLYTVATLRLRPDG EDTINLQLKDVGLDFSWPIQKIKEVVAHLGSPFSSTPTSCSLEIIKSLTALVDEQSFP EARIGLASGVCAFLWLYTSILGFKPATVIVTSQLPVGAGLGSSAAYCVTLSAALLAFS DSVKVDMSQKGWFIFKEAEVELLNKWAFEGEKIIHGKPSGVDNSVSTFGNMIKFKSGS MTRIDSNMPLRMLITNTKVGRDTKALVANVSSRKSKHPEVMGSVLNAIEFISEEWSNI IQLHALDDLSLAANEERLIELMEMNQGLLLSIGVSHAAIETVLQTTMKYKLASKLTGA GGGGCVLTFLPIQLSETIVDKVVGELESFGFQCFAAGIGGKGVQISFDSSP" CDS complement(join(39100135..39100253,39100644..39101057, 39101636..39101889,39101970..39102213,39103268..39103394)) /locus_tag="TCM_026574" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Mevalonate kinase isoform 1" /protein_id="EOY11366.1" /db_xref="Phytozome:POPTR_0013s02490.1" /db_xref="TAIR:AT5G27450.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q2HTL9" /translation="MEVTARAPGKIILAGEHAVVHGYTAVASSIDLYTVATLRLRPDG EDTINLQLKDVGLDFSWPIQKIKEVVAHLGSPFSSTPTSCSLEIIKSLTALVDEQSFP EARIGLASGVCAFLWLYTSILGFKPATVIVTSQLPVGAGLGSSAAYCVTLSAALLAFS DSVKVDMSQKGWFIFKEAEVELLNKWAFEGEKIIHGKPSGVDNSVSTFGNMIKFKSGS MTRIDSNMPLRMLITNTKVGRDTKALVANVSSRKSKHPEVMGSVLNAIEFISEEWSNI IQLHALDDLSLAANEERLIELMEMNQGLLLSIGVSHAAIETVLQTTMKYKLASKLTGA GGGGCVLTFLPIQLSETIVDKVVGELESFGFQCFAAGIGGKGVQISFDSSP" gene complement(39106241..39109484) /locus_tag="TCM_046817" /note="dbxref CacaoGD:Thecc1EG046817" mRNA complement(join(39106241..39106556,39106697..39106831, 39107142..39107310,39107442..39107589,39107887..39108069, 39108373..39108498,39108582..39108706,39108812..39108964, 39109267..39109484)) /locus_tag="TCM_046817" /product="Amidase 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000036001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046818t1" /inference="similar to AA sequence:Phytozome:GSVIVT01000036001" /note="quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00261t00002" CDS complement(join(39106404..39106556,39106697..39106831, 39107142..39107310,39107442..39107589,39107887..39108069, 39108373..39108498,39108582..39108706,39108812..39108964, 39109267..39109373)) /locus_tag="TCM_046817" /note="paralog of Thecc1EG046818t1" /codon_start=1 /product="Amidase 1" /protein_id="EOY11367.1" /db_xref="Phytozome:GSVIVT01000036001" /db_xref="TAIR:AT1G08980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FR37" /translation="MAKSFEYGAFMEKFILQPSPSQQLPLNGLSFAVKDIFDVDGYVT GFGNPDWKRTHSAAISTAPAVLDVLRAGATCVGKTVMDEMAYCINGENIHYGTPTNPC APDRVPGGSSSGSAVAVGARLVDFSLGTDTGGSVRVPASYCGILGFRPSHDAVSTSGV IPMAQSFDTVGWFARDPVVLNKVGRVLLHLPNVDPVRPSQIIIPEDCFSLSSIPNDRT TQVLVKSVEKLFGGQILKHVILGDYVKEKVPSLQHFMSGGNEEHFYNIPSLAALSSAM RLLQRYEFKNNHAEWVTTVNPNLGPGLSERIWAAIRTPEENIDVCHTVQNEFRAALTA LLEDKGILALPTIPGDPPKLQSNPAALEVFRARAFSLLSIAGVSGFCQVSIPLGMHND LPVSISLVAKHGSDAFLLNLVETLYDTIKEEVGIAERTSN" mobile_element complement(39110337..39110550) /note="source:CACAO_M_E11357_F268_scaffold_2 712 923" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 39110538..39110727 /note="source:CACAO_M_E1542_F20_scaffold_1 11884 12035" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(39110557..39110775) /note="source:INTACT1798F_F56_scaffold_10-int 15687 15900" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(39110776..39111741) /note="source:INTACT227_F56_scaffold_4-int 13216 14013" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(39111768..39115330) /locus_tag="TCM_046818" /note="dbxref CacaoGD:Thecc1EG046818" mRNA complement(join(39111768..39112284,39112380..39112514, 39112722..39112890,39112975..39113122,39113449..39113631, 39114008..39114133,39114220..39114344,39114436..39114588, 39115164..39115330)) /locus_tag="TCM_046818" /product="Amidase 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000036001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046817t1" /inference="similar to AA sequence:Phytozome:GSVIVT01000036001" /note="quality class is strong-expertchoice, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11514t5" CDS complement(join(39112141..39112284,39112380..39112514, 39112722..39112890,39112975..39113122,39113449..39113631, 39114008..39114133,39114220..39114344,39114436..39114588, 39115164..39115273)) /locus_tag="TCM_046818" /note="paralog of Thecc1EG046817t1" /codon_start=1 /product="Amidase 1" /protein_id="EOY11368.1" /db_xref="Phytozome:GSVIVT01000036001" /db_xref="TAIR:AT1G08980.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FR37" /translation="MAKSLEFGAFMEKFTLQPSPSLQQLPLSGLTFAVKDIFDIEGYV TGFGNPDWARTHSAATTTAPAVMDLLKGGATCLGKTVMDEMAYCMYGVNKHYGTPTNP CAPDRVPGGSSSGSAVAVGAMLVDFSLGTDTGASVRVPASYCGILGFRPSLGAISTVG VVPMSQSFDTVGWFARDPVILNRVGRVLLHLPDVDPIKPNHIIIAEDCFHLSSVPSDR TAQILVKSIRKLFGGQCVKHVILGDYVKDKVPSLQHFMDKENEDQEDNIPSLAALSSA MRLLQRYEFKNNHAEWVAKVNPDFGPGISERIWDAIKVTGENVDVCHSVRTELCAALT DLLGDHGILALPTTPGEPPKVQANPSTLDLFFSKPFSLLSIAGVSGFCQVSIPLGMYH NVPVAISLAAKHGSDAFLLNLVETLYDSLKEQIELLTE" mobile_element complement(39115730..39116220) /note="source:scaffold_2_CACTA_0244 14249 14702" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(39116221..39116317) /note="source:INTACT135F_F90_scaffold_2-int 13386 14001" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(39116701..39119401) /locus_tag="TCM_026576" /note="dbxref CacaoGD:Thecc1EG026576" mRNA complement(join(39116701..39117526,39117633..39117694, 39117929..39118041,39118171..39118226,39118314..39118393, 39118566..39118660,39119176..39119401)) /locus_tag="TCM_026576" /product="RING/U-box superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30128.m008758" /inference="similar to AA sequence:Phytozome:GSVIVT01000035001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.64 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01890t00002" mRNA complement(join(39117172..39117526,39117633..39117694, 39117929..39118041,39118171..39118226,39118314..39118660, 39119176..39119315)) /locus_tag="TCM_026576" /product="RING/U-box superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30128.m008758" /inference="similar to AA sequence:Phytozome:GSVIVT01000035001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc892t4_C2; inference alignment:Newbler:10:TSA:cgbaL_g01890t00002" CDS complement(join(39117223..39117526,39117633..39117694, 39117929..39118041,39118171..39118226,39118314..39118393, 39118566..39118660,39119176..39119380)) /locus_tag="TCM_026576" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="RING/U-box superfamily protein, putative isoform 1" /protein_id="EOY11369.1" /db_xref="Phytozome:GSVIVT01000035001" /db_xref="TAIR:AT3G05250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MZU0" /translation="MARQYLRKPPVKHKTRGLRRSIGNRSEIPMNREEDAKQTGSCPS QQDFNSCPICLGPLVQESYLDTCFHKFCYNCIVHWSRVVASKRTRPSSSVKCPLCKTE NFSVISGFDGTCFQRHYINQDFENRFTFSKAHKYRLQCYYSEPGIVNDIFDVLRFWKS RKYLQSNVWLHGWLKRELQTLMQEEDVDVVVHHIHGVINSFLRRIEQTHLLKKPAEAK QDNFRTAVFDAAKPFLLARTDRFVNEVELFLASGLNIDAYDAVYMQRLGWNTPGGTTS TKPAEEPSQHVGVVPYLYIFDIDSDGAE" CDS complement(join(39117223..39117526,39117633..39117694, 39117929..39118041,39118171..39118226,39118314..39118414)) /locus_tag="TCM_026576" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="RING/U-box superfamily protein, putative isoform 2" /protein_id="EOY11370.1" /db_xref="Phytozome:GSVIVT01000035001" /db_xref="TAIR:AT3G05250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MZU0" /translation="MVWEILQTENFSVISGFDGTCFQRHYINQDFENRFTFSKAHKYR LQCYYSEPGIVNDIFDVLRFWKSRKYLQSNVWLHGWLKRELQTLMQEEDVDVVVHHIH GVINSFLRRIEQTHLLKKPAEAKQDNFRTAVFDAAKPFLLARTDRFVNEVELFLASGL NIDAYDAVYMQRLGWNTPGGTTSTKPAEEPSQHVGVVPYLYIFDIDSDGAE" gene 39120537..39121551 /locus_tag="TCM_026578" /note="dbxref CacaoGD:Thecc1EG026578" mRNA 39120537..39121551 /locus_tag="TCM_026578" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene22578" /inference="similar to AA sequence:ricco:30128.m008755" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g13115t00001" CDS 39120608..39121315 /locus_tag="TCM_026578" /note="dbxref ricco:30128.m008755" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11371.1" /translation="MQKTLQFKPQFLHLENNLIFNPFLETTLSLQSFNCSSKSPIFTP SGLFSHKTQIQKPIICARKSRRRYGSERSTKFVLELISILASNLKILPQPLDLVVESL VGADGGGLEFLNGFKGGSFNGWRRRTRRTNWKKILGFLGFLGFCVLCLLFGKELRSEL LFGGLGFGFFLIALIKEWRRGLKDWIFGFCCVAVLVGLGLRGNEAMKWIKQTKVSSSS PMVENVRRGKRGGRWAL" gene complement(39121635..39125371) /locus_tag="TCM_026579" /note="dbxref CacaoGD:Thecc1EG026579" mRNA complement(join(39121635..39122317,39125267..39125371)) /locus_tag="TCM_026579" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g03024t00001" CDS complement(39121867..39122085) /locus_tag="TCM_026579" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11372.1" /translation="MLLISMRNIIVKPNEKYAKDCLDFFFSIQTKDTRRKLHLLRSIR MKTQMPDKRRYSRTCILILEPKPKKASS" gene complement(39125761..39136128) /locus_tag="TCM_026580" /note="dbxref CacaoGD:Thecc1EG026580" mRNA complement(join(39125761..39126287,39126730..39127097, 39130142..39130278)) /locus_tag="TCM_026580" /product="HSP20-like chaperones superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s02550.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026582t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s02550.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11489t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11489t1" mRNA complement(join(39125868..39126287,39126730..39127097, 39130171..39130248,39136012..39136090)) /locus_tag="TCM_026580" /product="HSP20-like chaperones superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s02550.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026582t2" /inference="similar to AA sequence:Phytozome:POPTR_0013s02550.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00053t00005; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11489t1" mRNA complement(join(39125970..39126287,39126730..39127067, 39129950..39130105,39135868..39136128)) /locus_tag="TCM_026580" /product="HSP20-like chaperones superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s02550.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046320t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s02550.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3vel4scxLoc19t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11489t1" CDS complement(join(39126055..39126287,39126730..39127097, 39130171..39130244)) /locus_tag="TCM_026580" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG026582t2" /codon_start=1 /product="HSP20-like chaperones superfamily protein isoform 2" /protein_id="EOY11374.1" /db_xref="Phytozome:POPTR_0013s02550.1" /db_xref="TAIR:AT1G54850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I7X4" /translation="MTIDSFTMEIMFKTYWKTISLAHIRSDRTEGENNEPNRVNPQQP VLDVPPLSCVHYIGPPSPGDTFSSPTREQTEASERIGPAMIFLPSQSTREELDNMMAH AKYGVALTGAAATGSIGPLRGLRNISESEDSYHFRVNVPGASMEKGDFSCDIEPDGTV VIKGISTTGEKVVYWGSLVFDMLTQNLGPLGPFTISFQLPGPVNPQEVVSRLADGIFE AIVKKK" CDS complement(join(39126055..39126287,39126730..39127097, 39130142..39130158)) /locus_tag="TCM_026580" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG026582t1" /codon_start=1 /product="HSP20-like chaperones superfamily protein isoform 1" /protein_id="EOY11373.1" /db_xref="Phytozome:POPTR_0013s02550.1" /db_xref="TAIR:AT1G54850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I7X4" /translation="MASPMRSDRTEGENNEPNRVNPQQPVLDVPPLSCVHYIGPPSPG DTFSSPTREQTEASERIGPAMIFLPSQSTREELDNMMAHAKYGVALTGAAATGSIGPL RGLRNISESEDSYHFRVNVPGASMEKGDFSCDIEPDGTVVIKGISTTGEKVVYWGSLV FDMLTQNLGPLGPFTISFQLPGPVNPQEVVSRLADGIFEAIVKKK" CDS complement(join(39126055..39126287,39126730..39127067, 39129950..39129981)) /locus_tag="TCM_026580" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG046320t1" /codon_start=1 /product="HSP20-like chaperones superfamily protein isoform 3" /protein_id="EOY11375.1" /db_xref="Phytozome:POPTR_0013s02550.1" /db_xref="TAIR:AT1G54850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I7X4" /translation="MFFLVWDVILTPNRVNPQQPVLDVPPLSCVHYIGPPSPGDTFSS PTREQTEASERIGPAMIFLPSQSTREELDNMMAHAKYGVALTGAAATGSIGPLRGLRN ISESEDSYHFRVNVPGASMEKGDFSCDIEPDGTVVIKGISTTGEKVVYWGSLVFDMLT QNLGPLGPFTISFQLPGPVNPQEVVSRLADGIFEAIVKKK" gene complement(39131634..39141901) /locus_tag="TCM_026582" /note="dbxref CacaoGD:Thecc1EG026582" mRNA complement(join(39131634..39132053,39132497..39132864, 39135933..39136090)) /locus_tag="TCM_026582" /product="HSP20-like chaperones superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s02550.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026580t2" /inference="similar to AA sequence:Phytozome:POPTR_0013s02550.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00053t00008; inference alignment:Newbler:10:TSA:cgbaB_g00053t00004; inference alignment:Newbler:10:TSA:cgbaP1_g00399t00002" mRNA complement(join(39131634..39132053,39132497..39132864, 39133357..39133502)) /locus_tag="TCM_026582" /product="HSP20-like chaperones superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s02550.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046320t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s02550.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00053t00009; inference alignment:Newbler:10:TSA:cgbaB_g00053t00004; inference alignment:Newbler:10:TSA:cgbaP1_g00399t00002" mRNA complement(join(39131777..39132053,39132497..39132864, 39135904..39136067,39141879..39141901)) /locus_tag="TCM_026582" /product="HSP20-like chaperones superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s02550.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026580t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s02550.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00053t00004" CDS complement(join(39131821..39132053,39132497..39132864, 39135933..39136006)) /locus_tag="TCM_026582" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG026580t2" /codon_start=1 /product="HSP20-like chaperones superfamily protein isoform 2" /protein_id="EOY11377.1" /db_xref="Phytozome:POPTR_0013s02550.1" /db_xref="TAIR:AT1G54850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I7X4" /translation="MTIDSFTMEIMLKTHWKTISLAHIRSDRTEGENNEPNSMNPQQP VLDVPPLSCVHYIGPPSPGDTFSSPTREQTEASERIGPAMIFLPSQSTREELDNMMAH TKYGVALTGAAATGSIGPLRGLRNISESEDSYHFRVNVPGASMEKGDFSCDIEPDGTV VIKGISTTGEKVVHWGSLVFEMLTQNLGPLGPFTISFQLPGPVNPQEVVSRLADGIFE AIVKKK" CDS complement(join(39131821..39132053,39132497..39132864, 39135904..39135920)) /locus_tag="TCM_026582" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG026580t1" /codon_start=1 /product="HSP20-like chaperones superfamily protein isoform 1" /protein_id="EOY11376.1" /db_xref="Phytozome:POPTR_0013s02550.1" /db_xref="TAIR:AT1G54850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I7X4" /translation="MASPMRSDRTEGENNEPNSMNPQQPVLDVPPLSCVHYIGPPSPG DTFSSPTREQTEASERIGPAMIFLPSQSTREELDNMMAHTKYGVALTGAAATGSIGPL RGLRNISESEDSYHFRVNVPGASMEKGDFSCDIEPDGTVVIKGISTTGEKVVHWGSLV FEMLTQNLGPLGPFTISFQLPGPVNPQEVVSRLADGIFEAIVKKK" CDS complement(join(39131821..39132053,39132497..39132864, 39133357..39133445)) /locus_tag="TCM_026582" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG046320t1" /codon_start=1 /product="HSP20-like chaperones superfamily protein isoform 3" /protein_id="EOY11378.1" /db_xref="Phytozome:POPTR_0013s02550.1" /db_xref="TAIR:AT1G54850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I7X4" /translation="MNSQTVSSGEDGNDLSERLRALNLNDGVLRSDRTEGENNEPNSM NPQQPVLDVPPLSCVHYIGPPSPGDTFSSPTREQTEASERIGPAMIFLPSQSTREELD NMMAHTKYGVALTGAAATGSIGPLRGLRNISESEDSYHFRVNVPGASMEKGDFSCDIE PDGTVVIKGISTTGEKVVHWGSLVFEMLTQNLGPLGPFTISFQLPGPVNPQEVVSRLA DGIFEAIVKKK" gene complement(39137399..>39141900) /locus_tag="TCM_026583" /note="dbxref CacaoGD:Thecc1EG026583" mRNA complement(join(39137399..39137813,39138257..39138624, 39141713..>39141900)) /locus_tag="TCM_026583" /product="HSP20-like chaperones superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000033001.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026580t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s02550.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaB_g12040t00001; inference alignment:Newbler:10:TSA:cgbaL_g02412t00001; inference alignment:Newbler:10:TSA:cgbaP1_g00399t00002" mRNA complement(join(39137412..39137813,39138257..39138624, 39141713..39141875)) /locus_tag="TCM_026583" /product="HSP20-like chaperones superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000033001.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026580t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s02550.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02412t00001; inference alignment:Newbler:10:TSA:cgbaL_g02412t00001" CDS complement(join(39137581..39137813,39138257..39138624, 39141713..>39141900)) /locus_tag="TCM_026583" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG026580t1" /codon_start=1 /product="HSP20-like chaperones superfamily protein, putative isoform 2" /protein_id="EOY11380.1" /db_xref="Phytozome:POPTR_0013s02550.1" /db_xref="TAIR:AT1G54850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I7X4" /translation="APNHFQRSPTLSDPRYFGKSHWPRDGKLNDYRFFHNGNHDENSL KYYQPCSHQVTLSMASPMRFERTKSENNEPNRMNPQQPVLDVAPLNCVPYIGPLNPGD MFSSPTKEQTKASETIGPAMIFLPSQSTREELDNMMANTKYGVALTGAAATGAIGPVR GLRDISDLEDSYFFRVNVPGASMEKGDFSCDIEPDGTVVIKGISTTGEKVVYWGSLVF DMLTQNLGPLGPFTISFQLPGPVNPQEVVSRLADGIFEAIVKKK" CDS complement(join(39137581..39137813,39138257..39138624, 39141713..39141729)) /locus_tag="TCM_026583" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG026580t1" /codon_start=1 /product="HSP20-like chaperones superfamily protein, putative isoform 1" /protein_id="EOY11379.1" /db_xref="Phytozome:POPTR_0013s02550.1" /db_xref="TAIR:AT1G54850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I7X4" /translation="MASPMRFERTKSENNEPNRMNPQQPVLDVAPLNCVPYIGPLNPG DMFSSPTKEQTKASETIGPAMIFLPSQSTREELDNMMANTKYGVALTGAAATGAIGPV RGLRDISDLEDSYFFRVNVPGASMEKGDFSCDIEPDGTVVIKGISTTGEKVVYWGSLV FDMLTQNLGPLGPFTISFQLPGPVNPQEVVSRLADGIFEAIVKKK" gene 39143155..39145202 /locus_tag="TCM_026584" /note="dbxref CacaoGD:Thecc1EG026584" mRNA join(39143155..39143300,39143358..39143546, 39143874..39144404,39144504..39145202) /locus_tag="TCM_026584" /product="HSP20-like chaperones superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30128.m008751" /inference="similar to AA sequence:ricco:30128.m008751" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.34 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1804t1" CDS join(39143278..39143300,39143358..39143546, 39143874..39144404,39144504..39144825) /locus_tag="TCM_026584" /note="dbxref ricco:30128.m008751" /codon_start=1 /product="HSP20-like chaperones superfamily protein, putative" /protein_id="EOY11381.1" /db_xref="TAIR:AT1G54850.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I7X6" /translation="MIYDCYIRILFTVSTAAMASPSQTNDSLAVTELRSKKIPNALMP NKDQHFLLYFIIGSYFGPDLKGEKCHKIEDIARFARLTGIGDFSLDRDAARLHGSLDS ENLYVVPVQVAEPTGDLSHLGSFLGSQKARRLQDIFRFRDQHFRIPPPIKSTSSTDAA MTSKAPVLTKHETCSTKNDGAAMLFFPSPPTGEELANMAAATKSGAALTGSAAMGQVG PIIGLMDIAECEDSYMFRVSLPGVKRDERNSLPIISLFLLLYCLCYIKVATLCAAGEF SCEVENDGKVVIRGVTTTGEKTVYRFSQMFEMLSQNLCPPGHFSISFQLPGRVDPQQF SGNFGTDGILEGIVMKKRHI" gene complement(39145801..39148098) /locus_tag="TCM_026585" /note="dbxref CacaoGD:Thecc1EG026585" mRNA complement(join(39145801..39146152,39146315..39147117, 39147743..39147772)) /locus_tag="TCM_026585" /product="Nuclear transcription factor Y subunit C-9 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g42460.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020537t2" /inference="similar to AA sequence:Phytozome:Glyma19g42460.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc977t3; alternateUTRof:Thecc1EG026585t1; inference alignment:Newbler:10:TSA:cgbaP2_g09053t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g15140t1" mRNA complement(join(39145832..39146152,39146315..39147133, 39147743..39147969)) /locus_tag="TCM_026585" /product="Nuclear transcription factor Y subunit C-9 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g42460.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020537t2" /inference="similar to AA sequence:Phytozome:Glyma19g42460.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00449t00001; alternateUTRof:Thecc1EG026585t1; inference alignment:Newbler:10:TSA:cgbaP2_g09053t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g15140t1" mRNA complement(join(39145841..39146152,39146315..39147103, 39147764..39147789,39148027..39148098)) /locus_tag="TCM_026585" /product="Nuclear transcription factor Y subunit C-9 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g42460.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020537t2" /inference="similar to AA sequence:Phytozome:Glyma19g42460.1" /note="transcript variant 8; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:PASA:2:TSA:puevd3b025717t1a3; alternateUTRof:Thecc1EG026585t1; inference alignment:Newbler:10:TSA:cgbaP2_g09053t00001" mRNA complement(join(39145841..39146152,39146315..39147108, 39147764..39147789,39148027..39148094)) /locus_tag="TCM_026585" /product="Nuclear transcription factor Y subunit C-9 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g42460.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020537t2" /inference="similar to AA sequence:Phytozome:Glyma19g42460.1" /note="transcript variant 10; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:PASA:2:TSA:puevd3b025717t1a4; alternateUTRof:Thecc1EG026585t1; inference alignment:Newbler:10:TSA:cgbaP2_g09053t00001" mRNA complement(join(39145841..39146152,39146307..39147108, 39147764..39147789,39148027..39148094)) /locus_tag="TCM_026585" /product="Nuclear transcription factor Y subunit C-9 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g42460.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020537t2" /inference="similar to AA sequence:Phytozome:Glyma19g42460.1" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:PASA:2:TSA:puevd3b025717t1a2; alternateUTRof:Thecc1EG026585t1; inference alignment:Newbler:10:TSA:cgbaP2_g09053t00001" mRNA complement(join(39145841..39146152,39146315..39147108, 39147743..39147969)) /locus_tag="TCM_026585" /product="Nuclear transcription factor Y subunit C-9 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g42460.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020537t2" /inference="similar to AA sequence:Phytozome:Glyma19g42460.1" /note="transcript variant 9; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:PASA:2:TSA:puevd3b025717t1a5; alternateUTRof:Thecc1EG026585t1; inference alignment:Newbler:10:TSA:cgbaP2_g09053t00001" mRNA complement(join(39145841..39146154,39146315..39147108)) /locus_tag="TCM_026585" /product="Nuclear transcription factor Y subunit C-9 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g42460.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020537t2" /inference="similar to AA sequence:Phytozome:Glyma19g42460.1" /note="transcript variant 11; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11458t1; alternateUTRof:Thecc1EG026585t1; inference alignment:Newbler:10:TSA:cgbaP2_g09053t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g15140t1" mRNA complement(join(39145867..39146152,39146315..39147133, 39147764..39147789,39148027..39148094)) /locus_tag="TCM_026585" /product="Nuclear transcription factor Y subunit C-9 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g42460.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020537t2" /inference="similar to AA sequence:Phytozome:Glyma19g42460.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g09053t00001; inference alignment:Newbler:10:TSA:cgbaP2_g09053t00001" mRNA complement(join(39145975..39146152,39146315..39147117, 39147764..39147787)) /locus_tag="TCM_026585" /product="Nuclear transcription factor Y subunit C-9 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g42460.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020537t2" /inference="similar to AA sequence:Phytozome:Glyma19g42460.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1356t10; alternateUTRof:Thecc1EG026585t1; inference alignment:Newbler:10:TSA:cgbaP2_g09053t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g15140t1" mRNA complement(join(39145975..39146152,39146307..39147117, 39147764..39147787)) /locus_tag="TCM_026585" /product="Nuclear transcription factor Y subunit C-9 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g42460.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020537t2" /inference="similar to AA sequence:Phytozome:Glyma19g42460.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1356t3; alternateUTRof:Thecc1EG026585t1; inference alignment:Newbler:10:TSA:cgbaP2_g09053t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g15140t1" mRNA complement(join(39145975..39147117,39147764..39147787)) /locus_tag="TCM_026585" /product="Nuclear transcription factor Y subunit C-9 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g42460.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020537t2" /inference="similar to AA sequence:Phytozome:Glyma19g42460.1" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1356t6; alternateUTRof:Thecc1EG026585t1; inference alignment:Newbler:10:TSA:cgbaP2_g09053t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g15140t1" CDS complement(39146332..39147102) /locus_tag="TCM_026585" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG020537t2" /codon_start=1 /product="Nuclear transcription factor Y subunit C-9 isoform 1" /protein_id="EOY11382.1" /db_xref="Phytozome:Glyma19g42460.1" /db_xref="TAIR:AT1G08970.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RF36" /translation="MDQQGHGQPPAMGMIGSGAQVPYGSNPYQNQVAGGPNPGSVVTS VGASQPTGAQLAQHQLAYQQIHHQQQQQLQQQLQAFWANQYQEIEKVTDFKNHSLPLA RIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAA ITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVGGPADALSYYMPAQHASQVGTPGM IMGKPVMDPAMYAQQSHPYMAQQMWPSGPEQQQSSSDH" CDS complement(39146332..39147102) /locus_tag="TCM_026585" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG020537t2" /codon_start=1 /product="Nuclear transcription factor Y subunit C-9 isoform 1" /protein_id="EOY11383.1" /db_xref="Phytozome:Glyma19g42460.1" /db_xref="TAIR:AT1G08970.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RF36" /translation="MDQQGHGQPPAMGMIGSGAQVPYGSNPYQNQVAGGPNPGSVVTS VGASQPTGAQLAQHQLAYQQIHHQQQQQLQQQLQAFWANQYQEIEKVTDFKNHSLPLA RIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAA ITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVGGPADALSYYMPAQHASQVGTPGM IMGKPVMDPAMYAQQSHPYMAQQMWPSGPEQQQSSSDH" CDS complement(39146332..39147102) /locus_tag="TCM_026585" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG020537t2" /codon_start=1 /product="Nuclear transcription factor Y subunit C-9 isoform 1" /protein_id="EOY11384.1" /db_xref="Phytozome:Glyma19g42460.1" /db_xref="TAIR:AT1G08970.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RF36" /translation="MDQQGHGQPPAMGMIGSGAQVPYGSNPYQNQVAGGPNPGSVVTS VGASQPTGAQLAQHQLAYQQIHHQQQQQLQQQLQAFWANQYQEIEKVTDFKNHSLPLA RIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAA ITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVGGPADALSYYMPAQHASQVGTPGM IMGKPVMDPAMYAQQSHPYMAQQMWPSGPEQQQSSSDH" CDS complement(39146332..39147102) /locus_tag="TCM_026585" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG020537t2" /codon_start=1 /product="Nuclear transcription factor Y subunit C-9 isoform 1" /protein_id="EOY11385.1" /db_xref="Phytozome:Glyma19g42460.1" /db_xref="TAIR:AT1G08970.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RF36" /translation="MDQQGHGQPPAMGMIGSGAQVPYGSNPYQNQVAGGPNPGSVVTS VGASQPTGAQLAQHQLAYQQIHHQQQQQLQQQLQAFWANQYQEIEKVTDFKNHSLPLA RIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAA ITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVGGPADALSYYMPAQHASQVGTPGM IMGKPVMDPAMYAQQSHPYMAQQMWPSGPEQQQSSSDH" CDS complement(39146332..39147102) /locus_tag="TCM_026585" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG020537t2" /codon_start=1 /product="Nuclear transcription factor Y subunit C-9 isoform 1" /protein_id="EOY11386.1" /db_xref="Phytozome:Glyma19g42460.1" /db_xref="TAIR:AT1G08970.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RF36" /translation="MDQQGHGQPPAMGMIGSGAQVPYGSNPYQNQVAGGPNPGSVVTS VGASQPTGAQLAQHQLAYQQIHHQQQQQLQQQLQAFWANQYQEIEKVTDFKNHSLPLA RIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAA ITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVGGPADALSYYMPAQHASQVGTPGM IMGKPVMDPAMYAQQSHPYMAQQMWPSGPEQQQSSSDH" CDS complement(39146332..39147102) /locus_tag="TCM_026585" /note="encoded by transcript variant 6; alternatively spliced; paralog of Thecc1EG020537t2" /codon_start=1 /product="Nuclear transcription factor Y subunit C-9 isoform 1" /protein_id="EOY11387.1" /db_xref="Phytozome:Glyma19g42460.1" /db_xref="TAIR:AT1G08970.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RF36" /translation="MDQQGHGQPPAMGMIGSGAQVPYGSNPYQNQVAGGPNPGSVVTS VGASQPTGAQLAQHQLAYQQIHHQQQQQLQQQLQAFWANQYQEIEKVTDFKNHSLPLA RIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAA ITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVGGPADALSYYMPAQHASQVGTPGM IMGKPVMDPAMYAQQSHPYMAQQMWPSGPEQQQSSSDH" CDS complement(39146332..39147102) /locus_tag="TCM_026585" /note="encoded by transcript variant 7; alternatively spliced; paralog of Thecc1EG020537t2" /codon_start=1 /product="Nuclear transcription factor Y subunit C-9 isoform 1" /protein_id="EOY11388.1" /db_xref="Phytozome:Glyma19g42460.1" /db_xref="TAIR:AT1G08970.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RF36" /translation="MDQQGHGQPPAMGMIGSGAQVPYGSNPYQNQVAGGPNPGSVVTS VGASQPTGAQLAQHQLAYQQIHHQQQQQLQQQLQAFWANQYQEIEKVTDFKNHSLPLA RIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAA ITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVGGPADALSYYMPAQHASQVGTPGM IMGKPVMDPAMYAQQSHPYMAQQMWPSGPEQQQSSSDH" CDS complement(39146332..39147102) /locus_tag="TCM_026585" /note="encoded by transcript variant 8; alternatively spliced; paralog of Thecc1EG020537t2" /codon_start=1 /product="Nuclear transcription factor Y subunit C-9 isoform 1" /protein_id="EOY11389.1" /db_xref="Phytozome:Glyma19g42460.1" /db_xref="TAIR:AT1G08970.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RF36" /translation="MDQQGHGQPPAMGMIGSGAQVPYGSNPYQNQVAGGPNPGSVVTS VGASQPTGAQLAQHQLAYQQIHHQQQQQLQQQLQAFWANQYQEIEKVTDFKNHSLPLA RIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAA ITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVGGPADALSYYMPAQHASQVGTPGM IMGKPVMDPAMYAQQSHPYMAQQMWPSGPEQQQSSSDH" CDS complement(39146332..39147102) /locus_tag="TCM_026585" /note="encoded by transcript variant 9; alternatively spliced; paralog of Thecc1EG020537t2" /codon_start=1 /product="Nuclear transcription factor Y subunit C-9 isoform 1" /protein_id="EOY11390.1" /db_xref="Phytozome:Glyma19g42460.1" /db_xref="TAIR:AT1G08970.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RF36" /translation="MDQQGHGQPPAMGMIGSGAQVPYGSNPYQNQVAGGPNPGSVVTS VGASQPTGAQLAQHQLAYQQIHHQQQQQLQQQLQAFWANQYQEIEKVTDFKNHSLPLA RIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAA ITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVGGPADALSYYMPAQHASQVGTPGM IMGKPVMDPAMYAQQSHPYMAQQMWPSGPEQQQSSSDH" CDS complement(39146332..39147102) /locus_tag="TCM_026585" /note="encoded by transcript variant 10; alternatively spliced; paralog of Thecc1EG020537t2" /codon_start=1 /product="Nuclear transcription factor Y subunit C-9 isoform 1" /protein_id="EOY11391.1" /db_xref="Phytozome:Glyma19g42460.1" /db_xref="TAIR:AT1G08970.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RF36" /translation="MDQQGHGQPPAMGMIGSGAQVPYGSNPYQNQVAGGPNPGSVVTS VGASQPTGAQLAQHQLAYQQIHHQQQQQLQQQLQAFWANQYQEIEKVTDFKNHSLPLA RIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAA ITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVGGPADALSYYMPAQHASQVGTPGM IMGKPVMDPAMYAQQSHPYMAQQMWPSGPEQQQSSSDH" CDS complement(39146332..39147102) /locus_tag="TCM_026585" /note="encoded by transcript variant 11; alternatively spliced; paralog of Thecc1EG020537t2" /codon_start=1 /product="Nuclear transcription factor Y subunit C-9 isoform 1" /protein_id="EOY11392.1" /db_xref="Phytozome:Glyma19g42460.1" /db_xref="TAIR:AT1G08970.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RF36" /translation="MDQQGHGQPPAMGMIGSGAQVPYGSNPYQNQVAGGPNPGSVVTS VGASQPTGAQLAQHQLAYQQIHHQQQQQLQQQLQAFWANQYQEIEKVTDFKNHSLPLA RIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAA ITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVGGPADALSYYMPAQHASQVGTPGM IMGKPVMDPAMYAQQSHPYMAQQMWPSGPEQQQSSSDH" gene complement(39149080..39151777) /locus_tag="TCM_026586" /note="dbxref CacaoGD:Thecc1EG026586" mRNA complement(join(39149080..39150235,39150557..39151777)) /locus_tag="TCM_026586" /product="Cation exchanger 11" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s02590.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s02590.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11506t1" CDS complement(join(39149471..39150235,39150557..39151387)) /locus_tag="TCM_026586" /codon_start=1 /product="Cation exchanger 11" /protein_id="EOY11393.1" /db_xref="Phytozome:POPTR_0013s02590.1" /db_xref="TAIR:AT1G08960.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04034" /translation="MALSFPSLLISTLVSLTLLSSLLFFFFLQAPPKPPLIHQRSLLS TSCNSQHSSDNALVNYLSLHYCLFNENFFLSIPFLCLFLLLHFYILIKTAQSHFSIVT TKLSSLLNLSPSMAAVTLLALGNGAPDVFASLHALRTGHYRTGFGAILSAGTFVSAFV VGFVAIYAAPFGVNPAPFIRDVMFYLVGALFLFYVYLSGEIFVWQAVGFVGFYIFFVG FVFWMDFGIEREEEEKPVLEKVMLTEDCQLLDKDCEIGELERSLKGEKATFVIAGVLE MISKAWEVPISFLLKLTIPQTSPSEWNRFYLSANIALCPLALLYACNSFMPLDHPIVF LLPNTHFPLWFVVLFASFSLALLHFILEKEPPKSEQIPVVVVAFVMSVFWISTVAGEL LNCLAALGSLLKLPPALLGLTVLAWGNSVGDLVADVAVAKAGHPAMAMAGCFAGPMFN MLVGLGTALLMQTANVYPKAYQLHFHIGIIIAFVFLLLSLMGSLLVITWSRFRVPRFW GFCLVGLYIIFTLVSLIIAKFSG" gene complement(39151417..39157171) /locus_tag="TCM_026587" /note="dbxref CacaoGD:Thecc1EG026587" mRNA complement(join(39151417..39152711,39153024..39153349, 39153548..39153677,39153753..39154087,39154179..39154326, 39154404..39154744,39155204..39155354,39155428..39155765, 39156004..39156154,39156237..39156577,39157043..39157171)) /locus_tag="TCM_026587" /product="Uncharacterized protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000025001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036890t1" /inference="similar to AA sequence:ricco:30128.m008748" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:PASA:2:TSA:puevd3b025719t1a2; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc510t9_C2" mRNA complement(join(39151417..39152564,39152655..39152711, 39152834..39152951,39153024..39153349,39153548..39153677, 39153753..39154087,39154179..39154326,39154404..39154744, 39155204..39155354,39155428..39155765,39156004..39156154, 39156237..39156577,39157043..39157171)) /locus_tag="TCM_026587" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000025001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036890t1" /inference="similar to AA sequence:Phytozome:GSVIVT01000025001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc510t9_C2" mRNA complement(join(39152014..39152564,39152655..39152711, 39153548..39153677,39153753..39154087,39154179..39154326, 39154404..39154744,39155204..39155354,39155428..39155765, 39156004..39156154,39157043..39157164)) /locus_tag="TCM_026587" /product="Uncharacterized protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000025001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036890t1" /inference="similar to AA sequence:Phytozome:GSVIVT01035986001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc510t4_C2; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc510t9_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11510t3" mRNA complement(join(39152014..39152564,39152655..39152711, 39152834..39152951,39153024..39153349,39153548..39153677, 39153753..39154087,39154179..39154326,39154404..39154744, 39155204..39155354,39155428..39155765,39156004..39156154, 39157043..39157164)) /locus_tag="TCM_026587" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000025001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036890t1" /inference="similar to AA sequence:Phytozome:GSVIVT01000025001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc510t9_C2; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc510t9_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11510t3" mRNA complement(join(39152014..39152564,39152655..39152711, 39152834..39152951,39153024..39153349,39153548..39153677, 39153753..39154087,39154179..39154326,39154404..39154744, 39155204..39155765,39156004..39156154,39157043..39157164)) /locus_tag="TCM_026587" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000025001" /inference="similar to AA sequence:Phytozome:GSVIVT01000025001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc510t3_C2; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc510t9_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11510t3" CDS complement(join(39152239..39152564,39152655..39152711, 39152834..39152951,39153024..39153349,39153548..39153677, 39153753..39154087,39154179..39154326,39154404..39154744, 39155204..39155354,39155428..39155765,39156004..39156154, 39156237..39156569)) /locus_tag="TCM_026587" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG036890t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY11394.1" /db_xref="Phytozome:GSVIVT01000025001" /db_xref="TAIR:AT2G24960.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RF34" /translation="MGSNAPTSNDRTRTNWTPTMERYFIDLMLDQMHRGNRLGHTFNK QAWTDMLTIFNAKFGCKYDRDTLKSHYTNLWKQYNDVKNLLEQNGFSWDDIRKLIVAP PHVWDAYVKGQPDAQVYRNRTLMNFNDLCLIYAYTQADGRYSRSSHDIDFDDDAQGMN FGVGTTIPPASDERPKIDWTQAMDQHFIELMLGHLRNGNKSKNTFNKQAWNDMLGSFN AKFGFPYGKSFLRRRYRKLLKHYSDVQSLLLQKGFSWDEKQQMVVADDLVWDNYVKAH PDARIYRNKKMLNYQDLRLIYGNASNIGVSSHMCQGRNTGPKILPAWTGEQNEDHLCD RREMLSIHWTPAMNRYFIDLLLNQALGGNKIHHMFIPEAWTQMVAMFNVKFGCQYDED ALKSQARDLRRQYNNIKILLEQNGFSWDDTREMVIAEDYIWDTYIKAHPYIQSYRNKS VPDYHKLCVIFGQESSNGWCSMAKSMYLENEDPDLMIGEDTQYHASNGCSRIDWNPSM DRHLIDLLLEQVHRGNRINGACNSELWMEMAVSFMETFGLQPDEEFLKNHHDTLGKQY YIMRTLLDRRVFSWDEARQMVTASDDVWDTYIKEYPDIESYRNISKPNYNDLCLIYGN STDGKDWRSGRDACSNGYGTKLKNGYCGRTDWIPSMDRYFIDLMLEHVRQGSMVDKKF NNLAWGDMVAKFSAEYGHQCDKDVLKSRFMNLRKRFNDMKNLLDHDGFAWDDMRQMII ADDNLWATYLKEHPDARSYRNRTLPSYNDLFLIYGNASINGWHLETENYAGEEEGESP TSSSPTRIHGTEFELPDQRKRQKTDASSISASRKAQRPNQELLHAFDERPIMVKSSFK NEDQFYGSIESIVDALQAIPGMDDVLFLDASKLLEDEKNAQKFVAMDVNQRRRWLLRK LRR" CDS complement(join(39152239..39152564,39152655..39152711, 39153548..39153677,39153753..39154087,39154179..39154326, 39154404..39154744,39155204..39155354,39155428..39155765, 39156004..39156115)) /locus_tag="TCM_026587" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG036890t1" /codon_start=1 /product="Uncharacterized protein isoform 5" /protein_id="EOY11398.1" /db_xref="Phytozome:GSVIVT01035986001" /db_xref="TAIR:AT2G24960.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9HB74" /translation="MNFNDLCLIYAYTQADGRYSRSSHDIDFDDDAQGMNFGVGTTIP PASDERPKIDWTQAMDQHFIELMLGHLRNGNKSKNTFNKQAWNDMLGSFNAKFGFPYG KSFLRRRYRKLLKHYSDVQSLLLQKGFSWDEKQQMVVADDLVWDNYVKAHPDARIYRN KKMLNYQDLRLIYGNASNIGVSSHMCQGRNTGPKILPAWTGEQNEDHLCDRREMLSIH WTPAMNRYFIDLLLNQALGGNKIHHMFIPEAWTQMVAMFNVKFGCQYDEDALKSQARD LRRQYNNIKILLEQNGFSWDDTREMVIAEDYIWDTYIKAHPYIQSYRNKSVPDYHKLC VIFGQESSNGWCSMAKSMYLENEDPDLMIGEDTQYHASNGCSRIDWNPSMDRHLIDLL LEQVHRGNRINGACNSELWMEMAVSFMETFGLQPDEEFLKNHHDTLGKQYYIMRTLLD RRVFSWDEARQMVTASDDVWDTYIKEYPDIESYRNISKPNYNDLCLIYGNSTDGKDWR SGRDACSNGYGEEEGESPTSSSPTRIHGTEFELPDQRKRQKTDASSISASRKAQRPNQ ELLHAFDERPIMVKSSFKNEDQFYGSIESIVDALQAIPGMDDVLFLDASKLLEDEKNA QKFVAMDVNQRRRWLLRKLRR" CDS complement(join(39152239..39152564,39152655..39152711, 39152834..39152951,39153024..39153349,39153548..39153677, 39153753..39154087,39154179..39154326,39154404..39154744, 39155204..39155354,39155428..39155765,39156004..39156115)) /locus_tag="TCM_026587" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG036890t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY11395.1" /db_xref="Phytozome:GSVIVT01000025001" /db_xref="TAIR:AT2G24960.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RF34" /translation="MNFNDLCLIYAYTQADGRYSRSSHDIDFDDDAQGMNFGVGTTIP PASDERPKIDWTQAMDQHFIELMLGHLRNGNKSKNTFNKQAWNDMLGSFNAKFGFPYG KSFLRRRYRKLLKHYSDVQSLLLQKGFSWDEKQQMVVADDLVWDNYVKAHPDARIYRN KKMLNYQDLRLIYGNASNIGVSSHMCQGRNTGPKILPAWTGEQNEDHLCDRREMLSIH WTPAMNRYFIDLLLNQALGGNKIHHMFIPEAWTQMVAMFNVKFGCQYDEDALKSQARD LRRQYNNIKILLEQNGFSWDDTREMVIAEDYIWDTYIKAHPYIQSYRNKSVPDYHKLC VIFGQESSNGWCSMAKSMYLENEDPDLMIGEDTQYHASNGCSRIDWNPSMDRHLIDLL LEQVHRGNRINGACNSELWMEMAVSFMETFGLQPDEEFLKNHHDTLGKQYYIMRTLLD RRVFSWDEARQMVTASDDVWDTYIKEYPDIESYRNISKPNYNDLCLIYGNSTDGKDWR SGRDACSNGYGTKLKNGYCGRTDWIPSMDRYFIDLMLEHVRQGSMVDKKFNNLAWGDM VAKFSAEYGHQCDKDVLKSRFMNLRKRFNDMKNLLDHDGFAWDDMRQMIIADDNLWAT YLKEHPDARSYRNRTLPSYNDLFLIYGNASINGWHLETENYAGEEEGESPTSSSPTRI HGTEFELPDQRKRQKTDASSISASRKAQRPNQELLHAFDERPIMVKSSFKNEDQFYGS IESIVDALQAIPGMDDVLFLDASKLLEDEKNAQKFVAMDVNQRRRWLLRKLRR" CDS complement(join(39152239..39152564,39152655..39152711, 39152834..39152951,39153024..39153349,39153548..39153677, 39153753..39154087,39154179..39154326,39154404..39154744, 39155204..39155318)) /locus_tag="TCM_026587" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY11396.1" /db_xref="Phytozome:GSVIVT01000025001" /db_xref="TAIR:AT2G24960.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RF34" /translation="MLNYQDLRLIYGNASNIGVSSHMCQGRNTGPKILPAWTGEQNED HLCDRREMLSIHWTPAMNRYFIDLLLNQALGGNKIHHMFIPEAWTQMVAMFNVKFGCQ YDEDALKSQARDLRRQYNNIKILLEQNGFSWDDTREMVIAEDYIWDTYIKAHPYIQSY RNKSVPDYHKLCVIFGQESSNGWCSMAKSMYLENEDPDLMIGEDTQYHASNGCSRIDW NPSMDRHLIDLLLEQVHRGNRINGACNSELWMEMAVSFMETFGLQPDEEFLKNHHDTL GKQYYIMRTLLDRRVFSWDEARQMVTASDDVWDTYIKEYPDIESYRNISKPNYNDLCL IYGNSTDGKDWRSGRDACSNGYGTKLKNGYCGRTDWIPSMDRYFIDLMLEHVRQGSMV DKKFNNLAWGDMVAKFSAEYGHQCDKDVLKSRFMNLRKRFNDMKNLLDHDGFAWDDMR QMIIADDNLWATYLKEHPDARSYRNRTLPSYNDLFLIYGNASINGWHLETENYAGEEE GESPTSSSPTRIHGTEFELPDQRKRQKTDASSISASRKAQRPNQELLHAFDERPIMVK SSFKNEDQFYGSIESIVDALQAIPGMDDVLFLDASKLLEDEKNAQKFVAMDVNQRRRW LLRKLRR" CDS complement(join(39152640..39152711,39153024..39153349, 39153548..39153677,39153753..39154087,39154179..39154326, 39154404..39154744,39155204..39155354,39155428..39155765, 39156004..39156154,39156237..39156569)) /locus_tag="TCM_026587" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30128.m008748; paralog of Thecc1EG036890t1" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY11397.1" /db_xref="TAIR:AT2G24960.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RF34" /translation="MGSNAPTSNDRTRTNWTPTMERYFIDLMLDQMHRGNRLGHTFNK QAWTDMLTIFNAKFGCKYDRDTLKSHYTNLWKQYNDVKNLLEQNGFSWDDIRKLIVAP PHVWDAYVKGQPDAQVYRNRTLMNFNDLCLIYAYTQADGRYSRSSHDIDFDDDAQGMN FGVGTTIPPASDERPKIDWTQAMDQHFIELMLGHLRNGNKSKNTFNKQAWNDMLGSFN AKFGFPYGKSFLRRRYRKLLKHYSDVQSLLLQKGFSWDEKQQMVVADDLVWDNYVKAH PDARIYRNKKMLNYQDLRLIYGNASNIGVSSHMCQGRNTGPKILPAWTGEQNEDHLCD RREMLSIHWTPAMNRYFIDLLLNQALGGNKIHHMFIPEAWTQMVAMFNVKFGCQYDED ALKSQARDLRRQYNNIKILLEQNGFSWDDTREMVIAEDYIWDTYIKAHPYIQSYRNKS VPDYHKLCVIFGQESSNGWCSMAKSMYLENEDPDLMIGEDTQYHASNGCSRIDWNPSM DRHLIDLLLEQVHRGNRINGACNSELWMEMAVSFMETFGLQPDEEFLKNHHDTLGKQY YIMRTLLDRRVFSWDEARQMVTASDDVWDTYIKEYPDIESYRNISKPNYNDLCLIYGN STDGKDWRSGRDACSNGYGTKLKNGYCGRTDWIPSMDRYFIDLMLEHVRQGSMVDKKF NNLAWGDMVAKFSAEYGHQCDKDVLKSRFMNLRKRFNDMKNLLDHDGFAWDDMRQMII ADDNLWATYLKVKRRVNPLLVAVQQGYMEQVAWV" mRNA complement(join(39152924..39153349,39153548..39153677, 39153753..39154087,39154179..39154326,39154404..39154744, 39155204..39155354,39155428..39155765,39156004..39156154, 39156237..39157091)) /locus_tag="TCM_026587" /product="Uncharacterized protein isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000025001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036890t1" /inference="similar to AA sequence:ricco:30128.m008748" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc505t6; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc510t9_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11510t3" mRNA complement(join(39152924..39153677,39153753..39154087, 39154179..39154326,39154404..39154744,39155204..39155354, 39155428..39155765,39156004..39156154,39156237..39157091)) /locus_tag="TCM_026587" /product="Uncharacterized protein isoform 7" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000025001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG036890t1" /inference="similar to AA sequence:ricco:30128.m008748" /note="transcript variant 7; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc505t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11510t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc510t9_C2" CDS complement(join(39152967..39153349,39153548..39153677, 39153753..39154087,39154179..39154326,39154404..39154744, 39155204..39155354,39155428..39155765,39156004..39156154, 39156237..39156599)) /locus_tag="TCM_026587" /note="encoded by transcript variant 6; alternatively spliced; dbxref ricco:30128.m008748; paralog of Thecc1EG036890t1" /codon_start=1 /product="Uncharacterized protein isoform 6" /protein_id="EOY11399.1" /db_xref="TAIR:AT2G24960.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RF34" /translation="MKFYVLLGEGMGSNAPTSNDRTRTNWTPTMERYFIDLMLDQMHR GNRLGHTFNKQAWTDMLTIFNAKFGCKYDRDTLKSHYTNLWKQYNDVKNLLEQNGFSW DDIRKLIVAPPHVWDAYVKGQPDAQVYRNRTLMNFNDLCLIYAYTQADGRYSRSSHDI DFDDDAQGMNFGVGTTIPPASDERPKIDWTQAMDQHFIELMLGHLRNGNKSKNTFNKQ AWNDMLGSFNAKFGFPYGKSFLRRRYRKLLKHYSDVQSLLLQKGFSWDEKQQMVVADD LVWDNYVKAHPDARIYRNKKMLNYQDLRLIYGNASNIGVSSHMCQGRNTGPKILPAWT GEQNEDHLCDRREMLSIHWTPAMNRYFIDLLLNQALGGNKIHHMFIPEAWTQMVAMFN VKFGCQYDEDALKSQARDLRRQYNNIKILLEQNGFSWDDTREMVIAEDYIWDTYIKAH PYIQSYRNKSVPDYHKLCVIFGQESSNGWCSMAKSMYLENEDPDLMIGEDTQYHASNG CSRIDWNPSMDRHLIDLLLEQVHRGNRINGACNSELWMEMAVSFMETFGLQPDEEFLK NHHDTLGKQYYIMRTLLDRRVFSWDEARQMVTASDDVWDTYIKEYPDIESYRNISKPN YNDLCLIYGNSTDGKDWRSGRDACSNGYGTKLKNGYCGRTDWIPSMDRYFIDLMLEHV RQGSMVDKKFNNLAWGDMVAKFSAEYGHQCDKDVLKSRFMNLRKRFNDMKNLLDHDGF AWDDMRQMIIADDNLWATYLKVLYDQIFFCTKFLMFLLA" CDS complement(join(39153528..39153677,39153753..39154087, 39154179..39154326,39154404..39154744,39155204..39155354, 39155428..39155765,39156004..39156154,39156237..39156599)) /locus_tag="TCM_026587" /note="encoded by transcript variant 7; alternatively spliced; dbxref ricco:30128.m008748; paralog of Thecc1EG036890t1" /codon_start=1 /product="Uncharacterized protein isoform 7" /protein_id="EOY11400.1" /db_xref="TAIR:AT2G24960.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RF34" /translation="MKFYVLLGEGMGSNAPTSNDRTRTNWTPTMERYFIDLMLDQMHR GNRLGHTFNKQAWTDMLTIFNAKFGCKYDRDTLKSHYTNLWKQYNDVKNLLEQNGFSW DDIRKLIVAPPHVWDAYVKGQPDAQVYRNRTLMNFNDLCLIYAYTQADGRYSRSSHDI DFDDDAQGMNFGVGTTIPPASDERPKIDWTQAMDQHFIELMLGHLRNGNKSKNTFNKQ AWNDMLGSFNAKFGFPYGKSFLRRRYRKLLKHYSDVQSLLLQKGFSWDEKQQMVVADD LVWDNYVKAHPDARIYRNKKMLNYQDLRLIYGNASNIGVSSHMCQGRNTGPKILPAWT GEQNEDHLCDRREMLSIHWTPAMNRYFIDLLLNQALGGNKIHHMFIPEAWTQMVAMFN VKFGCQYDEDALKSQARDLRRQYNNIKILLEQNGFSWDDTREMVIAEDYIWDTYIKAH PYIQSYRNKSVPDYHKLCVIFGQESSNGWCSMAKSMYLENEDPDLMIGEDTQYHASNG CSRIDWNPSMDRHLIDLLLEQVHRGNRINGACNSELWMEMAVSFMETFGLQPDEEFLK NHHDTLGKQYYIMRTLLDRRVFSWDEARQMVTASDDVWDTYIKEYPDIESYRNISKPN YNDLCLIYGNSTDGKDWRSGRDACSNGYGEIFCY" gene 39158374..39159092 /locus_tag="TCM_026588" /note="dbxref CacaoGD:Thecc1EG026588" mRNA 39158374..39159092 /locus_tag="TCM_026588" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.58 coverage" CDS 39158431..39158850 /locus_tag="TCM_026588" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11401.1" /translation="MVKRALVALLLALACSATLFTQGLAAAAANDEQLSSAHLANFWR PWGRKTWPAFPPVPSHGKSPPGGPAQDPKIAKCFDSFKSVGSCLKPPIAADCCAALGA IQSECAGLSIGPINSAMLDPLLKQFCSGNGGAPAPPA" gene complement(39159714..39161271) /locus_tag="TCM_026589" /note="dbxref CacaoGD:Thecc1EG026589" mRNA complement(39159714..39161271) /locus_tag="TCM_026589" /product="Eukaryotic aspartyl protease family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400049836" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020529t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400049836" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2531t1" CDS complement(39159971..39161245) /locus_tag="TCM_026589" /note="paralog of Thecc1EG020529t1" /codon_start=1 /product="Eukaryotic aspartyl protease family protein, putative" /protein_id="EOY11402.1" /db_xref="Phytozome:PGSC0003DMP400049836" /db_xref="TAIR:AT1G03220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5C7L5" /translation="MASSSLYVILIFLSFSPFILISESQKPSKSNRFVLPVHQDKKTN LYVADIYKRTPPLQVPFVVDLNGRVLWVTCNQNYLSSTYRAPRCHSTQCARARTQYCH TCSSKARPGCHNNTCALKSVNPVTRLTAISELAQDVLSIQSTQGSNTGPLIRIPQFLF ACESSSLLQRGLPGNVQGVAGLGNSPISLPIQLASHFGFAGFAPTFALCLAPKGVVFF GDSPYHMLPDVDISRPLRYTPLIISPQGEYYIEVRSIKINNKDVPINKTVLSINKRGF GGTKLSTINPYTVLEHSIFKAVTHFFTNELSGIPQVKPVKPFGVCFGSKSFKSTRFGP GVPNIDLVLHNQHVTWRIFGANSMVQAAPGVSCLAFVDGGVNTRASIVIGAYQMENNL VQFDLARSRLGFSSSLLHFKTSCNNFNFTAIP" gene complement(39161943..39164349) /locus_tag="TCM_026590" /note="dbxref CacaoGD:Thecc1EG026590" mRNA complement(join(39161943..39163742,39163861..39163942, 39164058..39164349)) /locus_tag="TCM_026590" /product="Chloroplast-targeted copper chaperone-like protein" /inference="alignment:exonerate-protein:2:frave:gene22591" /inference="similar to AA sequence:Phytozome:Glyma03g39950.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04498t00001" CDS complement(join(39162346..39163742,39163861..39163942, 39164058..39164087)) /locus_tag="TCM_026590" /codon_start=1 /product="Chloroplast-targeted copper chaperone-like protein" /protein_id="EOY11403.1" /db_xref="Phytozome:Glyma03g39950.1" /db_xref="TAIR:AT3G06130.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RF30" /translation="MHKQEVMNMQTWVLKVNIQCSCDGCKQKIKKLLQKIDGVYSTSI NAEQGKVTVSGNVDPAILIRKLEKSGKHAQLWGAQKGSNNFPNQLTNQFKNLLMDGGK GGKDNKSQKGGGNNQPKGGQQHMQQMKGSKGQKSVKFHLPEDDLDDSDDDYDEFDDEF GDEFDDEFDDDEEELGHGHGHHMQNKMVPMMGKGHGPYGPNGMINGPGKKGGGGGDNG KKGGVIDLPIGIKGMGENKDGKHGNGGKKGGGNNKGGKQGKGGGDKNGGKKGGGGLLG FFKKDKSGKDCSHKKGKNEWDGKNKGAHNGNGGHGGGNNNGNGAKKGGGKNGGGGHEM NKIKNGGFHDIDVINHGKGGGGGGGGGGGGGKNMGQMGQMGGQMGQMGYNNMGQMGYN MSQMGHMGQIGNYPMSQMGNFPAVQGLPAAAAMNAGGYYQGMGPGNPYNQQYVAMMMN QQRANGNGMYAPMMYAQQYPYANYGPPPMHAANSESYAHFFSDENTNSCSIM" gene 39167726..39169354 /locus_tag="TCM_026591" /note="dbxref CacaoGD:Thecc1EG026591" mRNA join(39167726..39168052,39168667..39169354) /locus_tag="TCM_026591" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.17 coverage" CDS join(39167927..39168052,39168667..39168759) /locus_tag="TCM_026591" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11404.1" /translation="MTMIFAQTEYYREYCSLVFYGLTIVYLMAWCSQPKPDQTFRWAD DVTLKSNSFNDKETFAIALKLIQAYHVL" gene complement(39170088..39174721) /locus_tag="TCM_026592" /note="dbxref CacaoGD:Thecc1EG026592" mRNA complement(join(39170088..39170857,39170959..39171057, 39171508..39172018,39173956..39174721)) /locus_tag="TCM_026592" /product="RING/U-box superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000020001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG020513t4" /inference="similar to AA sequence:Phytozome:POPTR_0013s02630.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1929t3" CDS complement(join(39170831..39170857,39170959..39171057, 39171508..39172018,39173956..39174488)) /locus_tag="TCM_026592" /note="paralog of Thecc1EG020513t4" /codon_start=1 /product="RING/U-box superfamily protein" /protein_id="EOY11405.1" /db_xref="Phytozome:POPTR_0013s02630.1" /db_xref="TAIR:AT3G06140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HYX9" /translation="MGHDLSKLRRSSHRRQTQTRIPSLVPSSSSSSSSSPSTAAAAAI DTNNNSTTNNTNFNAGSTQTIPTPSSPSSAAAALSSQPHASSYVFAANAPHPSPSSSS PNHYHPPPPPPPSSSSSLMAPPFFSLAPPPYVDHESAKKIKNDVNIHKDSIRLFLDDN SLDSYLVSFTFDALVDGSITIFYFAKEGPNCIFMPLYPEIYMPKTIPFQKGLAQKFCQ PSGTGIDLGFFELGLLSKPSRKEDIFPLVISAQASLPSFSAGAGLDQPPPIVSPHAQI TQAVLKKNNEAHFQVKVIRQILWIEGIRYELREIYGIENSSEQGFDDSESGKACVICM TEPKDTAVLPCRHMCMCSGCAKQLRLRSKRCPVCRQPIQELIEIKIRNQPKPAAV" mobile_element complement(39174891..39175011) /note="source:scaffold_1_CACTA_0008 7221 7349" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(39175406..39175477) /note="source:scaffold_5_CACTA_0612 13266 13337" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(39175559..39175633) /note="source:scaffold_5_CACTA_0612 13265 13338" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(39175657..39175702) /note="source:scaffold_5_CACTA_0612 13271 13316" /mobile_element_type="transposon:TIR/CACTA" gene <39176621..39179068 /locus_tag="TCM_026593" /note="dbxref CacaoGD:Thecc1EG026593" mRNA join(39176621..39176708,39177458..39177647, 39178048..39178147,39178679..39179068) /locus_tag="TCM_026593" /product="Glycosyltransferase family protein 28 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma06g36690.1" /inference="similar to AA sequence:Phytozome:GSVIVT01006266001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g01160t00001; inference alignment:Newbler:10:TSA:cgbaP1_g01160t00001" mRNA join(<39176621..39176708,39178048..39178147, 39178679..39179068) /locus_tag="TCM_026593" /product="Glycosyltransferase family protein 28 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma06g36690.1" /inference="similar to AA sequence:Phytozome:Glyma05g13540.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g01160t00002; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc794t1_C2; inference alignment:Newbler:10:TSA:cgbaP1_g01160t00001" CDS join(<39176622..39176708,39178048..39178147, 39178679..39178935) /locus_tag="TCM_026593" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Glycosyltransferase family protein 28 isoform 2" /protein_id="EOY11407.1" /db_xref="Phytozome:Glyma05g13540.1" /db_xref="TAIR:AT4G16710.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SSJ1" /translation="IDEESGPSEPWLRGESRGGQAAATLTIFRSIGDDGSLAVDYFTF SSSIAEHLRSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELAERKH LYCARPQTLHQTIASMDLESLLPYSPGDATPVAKLINRFLGFPED" CDS join(39177468..39177647,39178048..39178147, 39178679..39178935) /locus_tag="TCM_026593" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Glycosyltransferase family protein 28 isoform 1" /protein_id="EOY11406.1" /db_xref="Phytozome:GSVIVT01006266001" /db_xref="TAIR:AT4G16710.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7SSJ1" /translation="MGEAEDGVKPKRVVFVTVGTTCFDALVKVVDSQKVKDELLRRGY THLLIQMGRGSYLPEKSIGDDGSLAVDYFTFSSSIAEHLRSASLVISHAGSGSIFETL RLGKPLIVVVNEDLMDNHQSELAEELAERKHLYCARPQTLHQTIASMDLESLLPYSPG DATPVAKLINRFLGFPED" gene 39181434..39184663 /locus_tag="TCM_026594" /note="dbxref CacaoGD:Thecc1EG026594" mRNA join(39181434..39181956,39182328..39182572, 39182899..39183284,39183636..39183768,39184013..39184102, 39184216..39184663) /locus_tag="TCM_026594" /product="Kinase superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000017001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001736t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s02660.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11498t1" CDS join(39181629..39181956,39182328..39182572, 39182899..39183284,39183636..39183768,39184013..39184102, 39184216..39184377) /locus_tag="TCM_026594" /note="paralog of Thecc1EG001736t1" /codon_start=1 /product="Kinase superfamily protein" /protein_id="EOY11408.1" /db_xref="Phytozome:POPTR_0013s02660.1" /db_xref="TAIR:AT1G54820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RF26" /translation="MEDSNIAAAPPAMPPGLSTAKNHTYHNPHRFYSKSQNHQHGTNL SLNFIIIIIISIILIIAVFAIFLIIALLRRLKSVRKHGSCKESGILNNTSSRFIAHNS INLNSSPDVEARCLNGGSIERTPPSRYRGVQVFTYKELELATDNFSEANVMGSGGFGV VYKGTLADGTVAAIKRLQRDGKREEHAFRMEVDLLSRLNSPYLVELLGYCADQHHRLL IFEFMPNGTLHQHLHHPSSQYRPLDWGTRLRIALDCARALEFLHEHAVPTVIHRDFKC TNVLLDQNLRAKVSDFGLAKMVSDKTNGQISTRVLGTTGYLAPEYASTGKLTTKSDVY SYGVVLLQLLTGRVPVDIKRPPGEHVLVSWALPRLTNRDKVAQMVDPAIQGQYSKKDL IQVAAIAAMCVQPEADYRPLMVDVVQSMIPLVKNCNSINSPGSSRVYRQTSTPKY" gene complement(39186303..39194399) /locus_tag="TCM_026595" /note="dbxref CacaoGD:Thecc1EG026595" mRNA complement(join(39186303..39187018,39187159..39187227, 39187303..39187374,39187514..39187613,39187912..39187988, 39188204..39188303,39188748..39188822,39189334..39189465, 39189887..39190221,39194201..39194399)) /locus_tag="TCM_026595" /product="DNA excision repair protein ERCC-1 isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT3G05210.1" /inference="similar to AA sequence:Phytozome:Glyma10g29730.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:PASA:2:TSA:puevd3b025727t1a2; inference alignment:Newbler:10:TSA:cgbaB_g06824t00001" mRNA complement(join(39186303..39187018,39187159..39187227, 39187303..39187374,39187514..39187613,39187912..39187988, 39188204..39188303,39188748..39188822,39189330..39189465, 39189887..39190221,39194201..39194399)) /locus_tag="TCM_026595" /product="DNA excision repair protein ERCC-1 isoform 3" /inference="alignment:exonerate- protein:2:TAIR:AT3G05210.1" /inference="similar to AA sequence:ricco:30128.m008739" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:PASA:2:TSA:puevd3b025727t1a3; inference alignment:Newbler:10:TSA:cgbaB_g06824t00001" mRNA complement(join(39186332..39187018,39187159..39187227, 39187514..39187613,39187912..39187988,39188204..39188303, 39188748..39188851,39189330..>39189443)) /locus_tag="TCM_026595" /product="Nucleotide repair protein, putative isoform 4" /inference="alignment:exonerate- protein:2:TAIR:AT3G05210.1" /inference="similar to AA sequence:ricco:30128.m008739" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1169t2; inference alignment:Newbler:10:TSA:cgbaB_g06824t00001" mRNA complement(join(39186407..39187018,39187159..39187227, 39187303..39187374,39187514..39187613,39187912..39187988, 39188204..39188303,39188748..39188851,39189330..39189465, 39189887..39190221,39194201..39194399)) /locus_tag="TCM_026595" /product="DNA excision repair protein ERCC-1 isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT3G05210.1" /inference="similar to AA sequence:Phytozome:Glyma10g29730.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06824t00001" CDS complement(join(39186686..39187018,39187159..39187227, 39187303..39187374,39187514..39187613,39187912..39187988, 39188204..39188303,39188748..39188822,39189334..39189465, 39189887..39190125)) /locus_tag="TCM_026595" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="DNA excision repair protein ERCC-1 isoform 2" /protein_id="EOY11410.1" /db_xref="Phytozome:Glyma10g29730.1" /db_xref="TAIR:AT3G05210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9MA98" /translation="MEEGENQREEHQNKRKTPIVIGIPSYKEVIESSQIKSTPPSLFT PSQSFSQAFNFIKSSEFYSPPPAPPAPSSAAISTPRPVGEANVPSSSAAAAAASASAS PVAASSSSNSSQSRNAILVSHRNVRWAFADIVCDYLLGQNSCALYLSLRYHLLHPDYL YYRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLCGWSLEECGRYLET IKVYENKPADLIQGQMDTDYLSRLNHALTTIRHVNKTDVVTLGSTFGTLASIMDASME DLARCPGIGERKVKRLYDTFHEPFKRVISSNPPVPETPILKEAEPCSASEATEAEKDT EDTSKRRKKEPEMNVKSALTAAFARYAGKISKKSTKSKGKERGGTSAAAEPVAATKNS KEGVET" CDS complement(join(39186686..39187018,39187159..39187227, 39187303..39187374,39187514..39187613,39187912..39187988, 39188204..39188303,39188748..39188851,39189330..39189465, 39189887..39190125)) /locus_tag="TCM_026595" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="DNA excision repair protein ERCC-1 isoform 1" /protein_id="EOY11409.1" /db_xref="Phytozome:Glyma10g29730.1" /db_xref="TAIR:AT3G05210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9MA98" /translation="MEEGENQREEHQNKRKTPIVIGIPSYKEVIESSQIKSTPPSLFT PSQSFSQAFNFIKSSEFYSPPPAPPAPSSAAISTPRPVGEANVPSSSAAAAAASASAS PVAASSSSNSSQSRNAILVSHRQKGNPLLKHIRNVRWAFADIVCDYLLGQNSCALYLS LRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLCGW SLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLNHALTTIRHVNKTDVVTLGSTFG TLASIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVISSNPPVPETPILKEAEPCS ASEATEAEKDTEDTSKRRKKEPEMNVKSALTAAFARYAGKISKKSTKSKGKERGGTSA AAEPVAATKNSKEGVET" CDS complement(join(39186686..39187018,39187159..39187227, 39187303..39187374,39187514..39187613,39187912..39187988, 39188204..39188303,39188748..39188822,39189330..39189448)) /locus_tag="TCM_026595" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30128.m008739" /codon_start=1 /product="DNA excision repair protein ERCC-1 isoform 3" /protein_id="EOY11411.1" /db_xref="TAIR:AT3G05210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9MA98" /translation="MCLLLLLLLLLPLPQLPRLLLHHHPILLRVAMLYSLAIGRNVRW AFADIVCDYLLGQNSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVV KPLLEVTKTALLHDCTLLCGWSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLNH ALTTIRHVNKTDVVTLGSTFGTLASIMDASMEDLARCPGIGERKVKRLYDTFHEPFKR VISSNPPVPETPILKEAEPCSASEATEAEKDTEDTSKRRKKEPEMNVKSALTAAFARY AGKISKKSTKSKGKERGGTSAAAEPVAATKNSKEGVET" CDS complement(join(39186686..39187018,39187159..39187227, 39187514..39187613,39187912..39187988,39188204..39188303, 39188748..39188851,39189330..>39189443)) /locus_tag="TCM_026595" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30128.m008739" /codon_start=1 /product="Nucleotide repair protein, putative isoform 4" /protein_id="EOY11412.1" /db_xref="TAIR:AT3G05210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9MA98" /translation="PSSSAAAAAASASASPVAASSSSNSSQSRNAILVSHRQKGNPLL KHIRNVRWAFADIVCDYLLGQNSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLC HVDVEDVVKPLLEVTKTALLHDCTLLCGWSLEECGRYLETIKVYENKPADLIQGQMDT DYLSRTLASIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVISSNPPVPETPILKE AEPCSASEATEAEKDTEDTSKRRKKEPEMNVKSALTAAFARYAGKISKKSTKSKGKER GGTSAAAEPVAATKNSKEGVET" mobile_element 39190471..39191053 /note="source:CACAO_M_S_E5210_F12_scaffold_1 7963 8467" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(39190472..39190780) /note="source:INTACT726_F314_scaffold_5-int 13570 13899" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(39191161..39191194) /note="source:INTACT60_F127_scaffold_9-int 13952 13985" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(39191165..39191204) /note="source:CACAO_M_E49205_F4_scaffold_6 2132 2175" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(39193017..39195862) /locus_tag="TCM_026596" /note="dbxref CacaoGD:Thecc1EG026596" mRNA complement(join(39193017..39193310,39194527..39195862)) /locus_tag="TCM_026596" /product="RING/U-box superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30128.m008738" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034441t1" /inference="similar to AA sequence:ricco:30128.m008738" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.33 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11585t1" mobile_element complement(39194030..39194083) /note="source:scaffold_1_CACTA_0005 6313 6366" /mobile_element_type="transposon:TIR/CACTA" mRNA complement(join(39194150..39194163,39194487..39195862)) /locus_tag="TCM_026596" /product="RING/U-box superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30128.m008738" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034441t1" /inference="similar to AA sequence:ricco:30128.m008738" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.39 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11585t1; alternateUTRof:Thecc1EG026596t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11585t1" CDS complement(39194608..39195756) /locus_tag="TCM_026596" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30128.m008738; paralog of Thecc1EG034441t1" /codon_start=1 /product="RING/U-box superfamily protein, putative isoform 1" /protein_id="EOY11413.1" /db_xref="TAIR:AT3G05200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MZS7" /translation="MSCTAKHGIVSLLLFFLFVLLSPPPSAAQPINQSDERYSYARFS PSMAIIVVVLIAALFFMGLFSIYIRNCSDSNANSVRPVAAGAGRSRRGTRGLEASVIE TFPTMVYSEVKVHKIGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLASHN TCPVCRANLAPQPGDPVSQPTELNNTAAEVDLEAQNDDGESETDEERRRNNNVNCDVE AQVAPEVEVISLNRTLNRNRTRGSRSSRARKLFFPRSHSTGHSLVQPGENTDRFTLRL PAEVRKQFMKRELNRALSMVVLPRERSSRRGYRTGEDGGSGRGKSFRRLERLDQGVKS DRWVFSMTPPFFSRASSMKSPKVAANDGEGSSSSSPVGPVGDSSRPPV" CDS complement(39194608..39195756) /locus_tag="TCM_026596" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30128.m008738; paralog of Thecc1EG034441t1" /codon_start=1 /product="RING/U-box superfamily protein, putative isoform 1" /protein_id="EOY11414.1" /db_xref="TAIR:AT3G05200.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9MZS7" /translation="MSCTAKHGIVSLLLFFLFVLLSPPPSAAQPINQSDERYSYARFS PSMAIIVVVLIAALFFMGLFSIYIRNCSDSNANSVRPVAAGAGRSRRGTRGLEASVIE TFPTMVYSEVKVHKIGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLASHN TCPVCRANLAPQPGDPVSQPTELNNTAAEVDLEAQNDDGESETDEERRRNNNVNCDVE AQVAPEVEVISLNRTLNRNRTRGSRSSRARKLFFPRSHSTGHSLVQPGENTDRFTLRL PAEVRKQFMKRELNRALSMVVLPRERSSRRGYRTGEDGGSGRGKSFRRLERLDQGVKS DRWVFSMTPPFFSRASSMKSPKVAANDGEGSSSSSPVGPVGDSSRPPV" mobile_element 39196028..39196082 /note="source:INTACT383F_F354_scaffold_3-int 4380 4434" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element complement(39200422..39200561) /note="source:scaffold_8_CACTA_0850 11567 11703" /mobile_element_type="transposon:TIR/CACTA" gene 39205466..39205881 /locus_tag="TCM_026597" /note="dbxref CacaoGD:Thecc1EG026597" mRNA 39205466..39205881 /locus_tag="TCM_026597" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.78 coverage" CDS 39205490..39205696 /locus_tag="TCM_026597" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11415.1" /translation="MSRKLQLFKCRTCLLFPPLSSMPPIISFCSINLLIFISGSNYVE LMTMKSALHIFYHSVWRVKKISSC" gene 39208412..39209677 /locus_tag="TCM_026598" /note="dbxref CacaoGD:Thecc1EG026598" mRNA join(39208412..39208779,39209389..39209677) /locus_tag="TCM_026598" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.22 coverage" CDS 39208560..39208772 /locus_tag="TCM_026598" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11416.1" /translation="MLTKLAGIKKWSSKPNPHGAHFLQTLAMTNHGSLGKWPPLFLMS LTDSLRNAAYMHAFDHQLSLSLTPKP" mobile_element complement(39210203..39210286) /note="source:scaffold_6_CACTA_0706 1423 1507" /mobile_element_type="transposon:TIR/CACTA" mobile_element 39210227..39210296 /note="source:CACAO_M_E12463_F12_scaffold_3 4652 4721" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(39210228..39210332) /note="source:CACAO_M_E427_F230_scaffold_1 1084 1159" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 39213912..39215825 /locus_tag="TCM_026599" /note="dbxref CacaoGD:Thecc1EG026599" mRNA join(39213912..39214011,39214320..39214849, 39214944..39215351,39215470..39215825) /locus_tag="TCM_026599" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000012001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001031t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s02680.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc45t6" CDS join(39214346..39214849,39214944..39215351, 39215470..39215565) /locus_tag="TCM_026599" /note="paralog of Thecc1EG001031t1" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative" /protein_id="EOY11417.1" /db_xref="Phytozome:POPTR_0013s02680.1" /db_xref="TAIR:AT1G72210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RJR6" /translation="MALDAVVFPQDLFGYNSKDLYSLLGGNWSYDFGLEKQEERVCFD HHFPDNQTPETNSFLHGDWSNSSSPPSMVPPHFGDHHRLHHPNSSSDATNNANGSTNG GEPSALDTSTTTSTRAKRRRSKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSL MPESYVQRGDQASIIGGAINFVKELEHRLQFLSAQNEVKERSDGGSSSSCSAFAEFFT FPQYSTSSTRSDSSISMNETMVETQSAIADIEVTMVESHANLKIRAKRRPAQLLKVVS GLNSMRLSILHLNVTTVDQTVLYSLSVKVEDDCKLTSVDDIATAVNQLLGRIQEDAML N" gene 39222931..39228244 /locus_tag="TCM_026600" /note="dbxref CacaoGD:Thecc1EG026600" mRNA join(39222931..39223006,39224339..39224993, 39225077..39225132,39226909..39228201) /locus_tag="TCM_026600" /product="AP2/B3 transcription factor family protein, putative isoform 1" /inference="alignment:exonerate-protein:2:frave:gene07828" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040397t1" /inference="similar to AA sequence:Phytozome:POPTR_0018s11780.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc3539t1" mobile_element complement(39223368..39223435) /note="source:CACAO_hAT_E731_scaffold_2 16 87" /mobile_element_type="transposon:TIR/hAT" CDS join(39224849..39224993,39225077..39225132, 39226909..39228015) /locus_tag="TCM_026600" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG040397t1" /codon_start=1 /product="AP2/B3 transcription factor family protein, putative isoform 1" /protein_id="EOY11418.1" /db_xref="Phytozome:POPTR_0018s11780.1" /db_xref="TAIR:AT1G50680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IMF3" /translation="MIHPGWTVSFGCSELSFIGRLVKPMFQPFDCKLMLVNVELKAAV LMVLGRDVTGQTFGVPMEGYELQQQLYIVYFSTSVLAFVLSFNIDMFNFLETMDEEML SVISSGEGNATSEVSDSISTSHPARKRQRSGSNGTSSRFKGVIRQKNGQWGAQLYANH TRIWLGTFKSETDAAMAYDSAAIKFRTGDTHRNFPLTDITVEEPKFQSNYSAEAVLSM IRDGSYQYKFMDFLKNSFRNGKVEIDLNSVRKYSGKGLSCKQLFQKELTPSDVGKLNR LVIPKKYAVKFFPPIEGSGSKGSDAELIFYDKFMRLWKFRYCYWNSSQSFVFTRGWNR FLKEKELKANDVISFYVCESRKEQEVQRFCMIDVNNYGNDDALAEAANLQVEREVDLQ LRLGHCYAFDGGKQVKQEQELMAVDATEDVNTTGFKLFGMQIN" mRNA join(39226381..39226462,39226991..39228244) /locus_tag="TCM_026600" /product="AP2 domain-containing transcription factor, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene07828" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040397t1" /inference="similar to AA sequence:Phytozome:POPTR_0018s11780.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc3539t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc3539t1" CDS 39226996..39228015 /locus_tag="TCM_026600" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG040397t1" /codon_start=1 /product="AP2 domain-containing transcription factor, putative isoform 2" /protein_id="EOY11419.1" /db_xref="Phytozome:POPTR_0018s11780.1" /db_xref="TAIR:AT1G50680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9IMF3" /translation="MDEEMLSVISSGEGNATSEVSDSISTSHPARKRQRSGSNGTSSR FKGVIRQKNGQWGAQLYANHTRIWLGTFKSETDAAMAYDSAAIKFRTGDTHRNFPLTD ITVEEPKFQSNYSAEAVLSMIRDGSYQYKFMDFLKNSFRNGKVEIDLNSVRKYSGKGL SCKQLFQKELTPSDVGKLNRLVIPKKYAVKFFPPIEGSGSKGSDAELIFYDKFMRLWK FRYCYWNSSQSFVFTRGWNRFLKEKELKANDVISFYVCESRKEQEVQRFCMIDVNNYG NDDALAEAANLQVEREVDLQLRLGHCYAFDGGKQVKQEQELMAVDATEDVNTTGFKLF GMQIN" gene complement(39228511..39238645) /locus_tag="TCM_026601" /note="dbxref CacaoGD:Thecc1EG026601" mRNA complement(join(39228511..39228900,39229021..39229169, 39229314..39229349,39229888..39229968,39230560..39230631, 39230843..39230926,39231378..39231431,39231631..39231716, 39231940..39231991,39232167..39232253,39232415..39232469, 39233128..39233228,39233340..39233528,39233926..39234028, 39234434..39234492,39234708..39234845,39235115..39235207, 39235714..39235785,39236528..39236626,39237734..39237966, 39238447..39238645)) /locus_tag="TCM_026601" /product="D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT5G27410.2" /inference="similar to AA sequence:Phytozome:GSVIVT01000009001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaB_g05091t00001" CDS complement(join(39229041..39229169,39229314..39229349, 39229888..39229968,39230560..39230631,39230843..39230926, 39231378..39231431,39231631..39231716,39231940..39231991, 39232167..39232253,39232415..39232469,39233128..39233228, 39233340..39233528,39233926..39234028,39234434..39234492, 39234708..39234845,39235115..39235207,39235714..39235785, 39236528..39236626,39237734..39237826)) /locus_tag="TCM_026601" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein isoform 1" /protein_id="EOY11420.1" /db_xref="Phytozome:GSVIVT01000009001" /db_xref="TAIR:AT5G27410.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HYX7" /translation="MGDQKQEEIEVIHSWSAPRSLSTSLMYSFAQRDDIEVLDEPLYG TFLNVTGVERPYREELLSKMECDGNKVVKEIIYGPGGKKYRFCKHIAKQRVPGLPIDL LQKGKHFILIRNPVAVLPSFDKVVPPSILELGLGELVSIYSELCALGKPPPVIDAADL QQNPEATLRGLCEDLNIPFQNAMLRWEAGPKLIDGLWAPWWYKSVHNSTCFTPTRKYP RAFPFSFYDLLEQSLPFYNMLRRHVRHTSSLLKSPLPVPDLPVPENEKLLAWVGDEIV PRESAKVSVFDSVVQGGDAVWEGLRVYSGKIFKLEEHLDRMFDSAKALAFDNVPTRDE IKEAIFRTLNANGMFDNTHIRLTLTRGKKVTSGMSPAFNLYSCTLIVLPEWKPPVYDN VSGITLVTATTRRNSPNNLDSKIHHNNLLNNILAKVEGNNASADDAIMLDKDGYVSET NATNIFLVKKGRVLTPHADCCLPGITRATVMELVVKEKFVLEERRISLSEFHTADEVW TTGTMGELSPVVKIDGRIIGDGKVGPVTRRLQDAYKKLTEDSGVPIPTNNES" mRNA complement(join(39230903..39230926,39231378..39231431, 39231631..39231716,39232167..39232253,39232415..39232469, 39233128..39233228,39233340..39233528,39233926..39234028, 39234434..39234492,39234708..39234845,39235115..39235207, 39235714..39235785,39236528..39236626,39237734..39238056)) /locus_tag="TCM_026601" /product="D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT5G27410.2" /inference="similar to AA sequence:Phytozome:GSVIVT01000009001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1130t1; inference alignment:Newbler:10:TSA:cgbaB_g05091t00001" CDS complement(join(39231678..39231716,39232167..39232253, 39232415..39232469,39233128..39233228,39233340..39233528, 39233926..39234028,39234434..39234492,39234708..39234845, 39235115..39235207,39235714..39235785,39236528..39236626, 39237734..39237826)) /locus_tag="TCM_026601" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein isoform 2" /protein_id="EOY11421.1" /db_xref="Phytozome:GSVIVT01000009001" /db_xref="TAIR:AT5G27410.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HYX7" /translation="MGDQKQEEIEVIHSWSAPRSLSTSLMYSFAQRDDIEVLDEPLYG TFLNVTGVERPYREELLSKMECDGNKVVKEIIYGPGGKKYRFCKHIAKQRVPGLPIDL LQKGKHFILIRNPVAVLPSFDKVVPPSILELGLGELVSIYSELCALGKPPPVIDAADL QQNPEATLRGLCEDLNIPFQNAMLRWEAGPKLIDGLWAPWWYKSVHNSTCFTPTRKYP RAFPFSFYDLLEQSLPFYNMLRRHVRHTSSLLKSPLPVPDLPVPENEKLLAWVGDEIV PRESAKVSVFDSVVQGGDAVWEGLRVYSGKIFKLEEHLDRMFDSAKALAFDNVPTRDE IKEAIFRTLNANGMFDNTHIRLTLTRGKKCFLNGNPLFMTM" gene complement(39238441..39242942) /locus_tag="TCM_026602" /note="dbxref CacaoGD:Thecc1EG026602" mRNA complement(join(39238441..39239434,39239687..39239757, 39240423..39240539,39240948..39241004,39241093..39241177, 39241878..39241965,39242059..39242122,39242218..39242343, 39242431..39242500,39242617..39242942)) /locus_tag="TCM_026602" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:TAIR:AT5G27410.2" /inference="similar to AA sequence:frave:gene22299" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11564t6" mRNA complement(join(39238743..39239434,39239687..39239716, 39241878..39241965,39242059..39242122,39242218..39242343, 39242617..>39242728)) /locus_tag="TCM_026602" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein, putative isoform 3" /inference="alignment:exonerate- protein:2:TAIR:AT5G27410.2" /inference="similar to AA sequence:frave:gene22299" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc252t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11564t6; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc190t6" mRNA complement(join(39238899..39239429,39239687..39239757, 39240423..39241004,39241093..39241177,39241878..39241965, 39242059..39242122,39242218..39242343,39242431..39242500, 39242617..39242728)) /locus_tag="TCM_026602" /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:TAIR:AT5G27410.2" /inference="similar to AA sequence:Phytozome:GSVIVT01000009001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc253t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11564t6; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc190t6" CDS complement(join(39238975..39239434,39239687..39239716, 39241878..39241965,39242059..39242122,39242218..39242343, 39242617..>39242727)) /locus_tag="TCM_026602" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene22299" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein, putative isoform 3" /protein_id="EOY11424.1" /db_xref="TAIR:AT5G27400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HYX7" /translation="RVNDGGTRAGSEGSSGSPPAFRFPRHGNHRYSAQFSEIGKGNEY MKKFLKKIITEVESRNGYVSDDLYEEYVPYMTSSKDFNLFKETGRILKCISFLFHADC VELSSCPSSRNLVVELQCSLNMLEGDTGELQEFMPEIILGADVIYDPSCLPHLIRVLA ILLSKKKSCDKNQKGSLRNSSTEVTCADGKANSSSQGQVLNAHGSDSSSSHAYDISIT GVNNAASLGSRADPVAYIASVIRNIDTFNHFLALADQANLTISDLTSTLRPLDLLPYM RSYDRSSIRLFTVTSK" CDS complement(join(39238975..39239434,39239687..39239757, 39240423..39240539,39240948..39241004,39241093..39241177, 39241878..39241965,39242059..39242122,39242218..39242343, 39242431..39242500,39242617..39242720)) /locus_tag="TCM_026602" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene22299" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein, putative isoform 1" /protein_id="EOY11422.1" /db_xref="TAIR:AT5G27400.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HYX7" /translation="MMAERELDPKAPPGLHLLSAFLAMETTDTLLSLARECGGGKITD EVQTFICNECLDFSIGKGNEYMKKFLKKIITEVESRNGYVSDDLYEEYVPYMTSSKDF NLFKETGRILKCISFLFHADCVELSSCPSSRNLVVELQCSLNMLEGDTGCSIWPSCLF LSELILSFPHIFLGKSCFEVGSGVGLVGICLAYVKASKVILSDGDLSTLANMKFNLEM NHINTETDLPETSTENPKLVKCIHLPWESASEKELQEFMPEIILGADVIYDPSCLPHL IRVLAILLSKKKSCDKNQKGSLRNSSTEVTCADGKANSSSQGQVLNAHGSDSSSSHAY DISITGVNNAASLGSRADPVAYIASVIRNIDTFNHFLALADQANLTISDLTSTLRPLD LLPYMRSYDRSSIRLFTVTSK" CDS complement(join(39240927..39241004,39241093..39241177, 39241878..39241965,39242059..39242122,39242218..39242343, 39242431..39242500,39242617..39242720)) /locus_tag="TCM_026602" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="S-adenosyl-L-methionine-dependent methyltransferases superfamily protein, putative isoform 2" /protein_id="EOY11423.1" /db_xref="Phytozome:GSVIVT01000009001" /db_xref="TAIR:AT5G27410.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RF21" /translation="MMAERELDPKAPPGLHLLSAFLAMETTDTLLSLARECGGGKITD EVQTFICNECLDFSIGKGNEYMKKFLKKIITEVESRNGYVSDDLYEEYVPYMTSSKDF NLFKETGRILKCISFLFHADCVELSSCPSSRNLVVELQCSLNMLEGDTGCSIWPSCLF LSELILSFPHIFLGKSCFEVGSGVGLVGICLAYVKASKVCYVIE" gene 39243782..39245871 /locus_tag="TCM_026603" /note="dbxref CacaoGD:Thecc1EG026603" mRNA join(39243782..39244726,39244811..39244891, 39244996..39245055,39245178..39245871) /locus_tag="TCM_026603" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.87 coverage" CDS join(39244091..39244726,39244811..39244891, 39244996..39245055,39245178..39245312) /locus_tag="TCM_026603" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11425.1" /translation="MSSTPVCYLTSCQAWDAYLQYPEDSFWPSRMLEINVKATFVACE KTQGGGGGKKLLDDVQLGGRRVVVQEESHGLILDQLLNNVVGKDWHGTNIWDVFDSMQ IPIQRPVLDEIVGCALAMAANECYENCKVLRMRVEIETLVDDDDQLMNFEEDQDVYSI DVEEDDFWETVEAFRTLRKVVVAEDNPPENLCSICLGEFLVGSDISATPCSHVCSSGN WKINHIPSKDKDMADALAKAGEISHVQMKVLTALAGPGELGLKVLGKAEREVAAMMIA MCFGCKLAMGMQLVTGLCQADEKSVRL" mobile_element complement(39245727..39245810) /note="source:CACAO_Mutator_E592_scaffold_3 3625 3710" /mobile_element_type="transposon:TIR/Mutator" gene 39246807..39252080 /locus_tag="TCM_026604" /note="dbxref CacaoGD:Thecc1EG026604" mRNA join(39246807..39246835,39247342..39247479, 39247627..39247729,39247815..39247858,39248283..39248312, 39248403..39248525,39248624..39248649,39248828..39248909, 39249122..39249163,39249246..39249279,39249428..39249503, 39249572..39249791,39249884..39249975,39250326..39250440, 39250514..39250693,39251509..39252080) /locus_tag="TCM_026604" /product="ATP binding microtubule motor family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g40800.1" /inference="similar to AA sequence:Phytozome:GSVIVT01000008001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1640t1_C2" CDS join(39247366..39247479,39247627..39247729, 39247815..39247858,39248283..39248312,39248403..39248525, 39248624..39248649,39248828..39248909,39249122..39249163, 39249246..39249279,39249428..39249503,39249572..39249791, 39249884..39249975,39250326..39250440,39250514..39250693, 39251509..39251571) /locus_tag="TCM_026604" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="ATP binding microtubule motor family protein isoform 1" /protein_id="EOY11426.1" /db_xref="Phytozome:GSVIVT01000008001" /db_xref="TAIR:AT3G63480.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LEG9" /translation="MSNVTVCVRFRPLSSKEKRDHGDDICIESLDSETFTIKDEKEEG FTFSFDKVFYEKSKQADVYEFLVLPIVRGAVDATNGTIIVYGQTGAGKTYSMEGPNIL ESDEQKKGILPRVVDGLFACIRSSDESVKYTIKLSVVEIYMEKVRDLFDLSKDNIQIK ESRTQGILLSGATEISLLDPAEALQSLSSGIANRAIGETQMNMASSRSHCVYLFTLNQ ESTTEKRVKSGKLILVDLAGSEKVEKTGAEGRVLEEAKTINKSLSALGNVINALTCGS PAKANHIPYRDSKLTRILQDALGGSSRTALLCCCSPSTFNASESLSTLRFGARAKHIK ASAFVKGNEEKYLKKNGACSATRDESFDIILKKMSERLDAEDVELLEELFIQAGLFID FGSTEYLESAYQDVAQQTISSLIQAVQELKFTVEMNNTFLHSSLWLRWNSWQELR" mRNA join(<39247406..39247479,39247627..39247729, 39247815..39247858,39248283..39248312,39248403..39248525, 39248624..39248649,39248828..39248909,39249122..39249163, 39249246..39249279,39249428..39249503,39249572..39249791, 39249884..39249975,39250326..39250440,39250514..39250693, 39251026..39251422) /locus_tag="TCM_026604" /product="ATP binding microtubule motor family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g40800.1" /inference="similar to AA sequence:Phytozome:GSVIVT01000008001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11524t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1640t1_C2" CDS join(<39247408..39247479,39247627..39247729, 39247815..39247858,39248283..39248312,39248403..39248525, 39248624..39248649,39248828..39248909,39249122..39249163, 39249246..39249279,39249428..39249503,39249572..39249791, 39249884..39249975,39250326..39250440,39250514..39250693, 39251026..39251073) /locus_tag="TCM_026604" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="ATP binding microtubule motor family protein isoform 2" /protein_id="EOY11427.1" /db_xref="Phytozome:GSVIVT01000008001" /db_xref="TAIR:AT3G63480.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LEG9" /translation="SKEKRDHGDDICIESLDSETFTIKDEKEEGFTFSFDKVFYEKSK QADVYEFLVLPIVRGAVDATNGTIIVYGQTGAGKTYSMEGPNILESDEQKKGILPRVV DGLFACIRSSDESVKYTIKLSVVEIYMEKVRDLFDLSKDNIQIKESRTQGILLSGATE ISLLDPAEALQSLSSGIANRAIGETQMNMASSRSHCVYLFTLNQESTTEKRVKSGKLI LVDLAGSEKVEKTGAEGRVLEEAKTINKSLSALGNVINALTCGSPAKANHIPYRDSKL TRILQDALGGSSRTALLCCCSPSTFNASESLSTLRFGARAKHIKASAFVKGNEEKYLK KNGACSATRDESFDIILKKMSERLDAEDVELLEELFIQAGLFIDFGSTEYLESAYQDV AQQTISSLIQAVQELKFTVEMASEREQGSQGKTCSC" gene 39252368..39256167 /locus_tag="TCM_026606" /note="dbxref CacaoGD:Thecc1EG026606" mRNA join(39252368..39252666,39254686..39254886, 39255039..39255205,39255365..39255635,39255736..39256167) /locus_tag="TCM_026606" /product="GDSL-like Lipase/Acylhydrolase superfamily protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene22301" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004459t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s02730.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g07354t00001; inference alignment:Newbler:10:TSA:cgbaP2_g07354t00001; inference alignment:Newbler:10:TSA:cgbaL_g03571t00001" CDS join(39252432..39252666,39254686..39254886, 39255039..39255205,39255365..39255635,39255736..39256004) /locus_tag="TCM_026606" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG004459t1" /codon_start=1 /product="GDSL-like Lipase/Acylhydrolase superfamily protein isoform 2" /protein_id="EOY11429.1" /db_xref="Phytozome:POPTR_0013s02730.2" /db_xref="TAIR:AT1G54790.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q3ECP6" /translation="MANITSVIQIVTLFAIVFSTASSVDFNFPVVFNFGDSNSDTGEL VAALGDFLELPNGQAYFKAPTGRFCDGRLIIDFLMDAMDLPFLNAYLDSIGTPSFRKG CNFAAAGSTILPPTANAVSPFSLGVQVAQFFRFKARVLELLAKGKKLGKYLPTEDSFQ KGLYMIDIGQNDLAGAFYSKTYDQILALIPSVMIEFETGVKKLYDQGARNFWIHNTGP LGCLAQNVAKFGTDASSLDELGCVSKHNQAAKVFNLQLHALCKKLQGQYTDSNFTYVD IYTIKSNLIANYSKLGFEQPIMACCGYGGGPLNYDSRIACGKTKVINGTSMTAKACND SSEYVNWDGIHYTEAANQYVSTQILTGKYSDPPFSNKMPFLLSLKF" mRNA join(39253842..39254447,39254686..39254886, 39255039..39255205,39255365..39255635,39255736..39256119) /locus_tag="TCM_026606" /product="GDSL-like Lipase/Acylhydrolase superfamily protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene22301" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004459t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s02730.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaL_g03571t00001" CDS join(39254210..39254447,39254686..39254886, 39255039..39255205,39255365..39255635,39255736..39256004) /locus_tag="TCM_026606" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG004459t1" /codon_start=1 /product="GDSL-like Lipase/Acylhydrolase superfamily protein isoform 1" /protein_id="EOY11428.1" /db_xref="Phytozome:POPTR_0013s02730.1" /db_xref="TAIR:AT1G54790.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q3ECP6" /translation="MAPKAYILQIFFALLFIFLPLTNSITFKYPAIFNFGDSNSDTGE LVAAGIESLEPPHGQSYFQTPSGRYCDGRLIIDFLMDAMDLPFLNAYLDSIGTPSFRK GCNFAAAGSTILPPTANAVSPFSLGVQVAQFFRFKARVLELLAKGKKLGKYLPTEDSF QKGLYMIDIGQNDLAGAFYSKTYDQILALIPSVMIEFETGVKKLYDQGARNFWIHNTG PLGCLAQNVAKFGTDASSLDELGCVSKHNQAAKVFNLQLHALCKKLQGQYTDSNFTYV DIYTIKSNLIANYSKLGFEQPIMACCGYGGGPLNYDSRIACGKTKVINGTSMTAKACN DSSEYVNWDGIHYTEAANQYVSTQILTGKYSDPPFSNKMPFLLSLKF" gene complement(39256303..39258367) /locus_tag="TCM_026607" /note="dbxref CacaoGD:Thecc1EG026607" mRNA complement(join(39256303..39256803,39257211..39257403, 39257684..39258367)) /locus_tag="TCM_026607" /product="Thylakoid lumen 18.3 kDa protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s02740.1" /inference="similar to AA sequence:Phytozome:Glyma10g29810.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g02453t00001" CDS complement(join(39256556..39256803,39257211..39257403, 39257684..39258130)) /locus_tag="TCM_026607" /codon_start=1 /product="Thylakoid lumen 18.3 kDa protein" /protein_id="EOY11430.1" /db_xref="Phytozome:Glyma10g29810.1" /db_xref="TAIR:AT1G54780.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZVL6" /translation="METILSSHSLSPILNPKASTSKSLLSPSIQPRSASLPLSKPFTC ALKKQTSQSLKPSLAEPKTWFVHAQRGLAALAISLALNFSPVLHTGNAWASEFDVINE GPPKDSYVFDDANVLSRVTKSDLRQLLSDLESRKTFHINFVTVRKLTSKADAFEYADQ VLERWYPTLEEGNNKGIVVLVTSQKEGAVTGGPAFIEAVGEKILDATVSENLPVLATD EKYNEAIYSSAKRLVAAIDGLPDPGGPKFKENKKESNFKSREETEEKRGQFSLVVGGL LVIAFVVPMAQYYAYVSKK" mobile_element complement(39261474..39261536) /note="source:INTACT349_F203_scaffold_6-int 240 303" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(39262754..39264175) /locus_tag="TCM_026608" /note="dbxref CacaoGD:Thecc1EG026608" mRNA complement(join(39262754..39263366,39263604..39264175)) /locus_tag="TCM_026608" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006880t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(39263012..39263366,39263604..39263887)) /locus_tag="TCM_026608" /note="paralog of Thecc1EG006880t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11431.1" /translation="MPHWALPSSGQFTVASAYEYLRKQETLHLNSISGTWQWAWRWNG PERIRMFLLQCLHNRLLANQERLRRHLSNDLICRQCNLEEESMLHALRDCRMVSTIDN GGSVCIKNGSFQQNCLTEVLKWWAPPTTDWIVLSTDGPYQKSTKQAAAGGVLRDSLGQ WRGGYTMRLRRCTAYWAELWGECRGLKHAWDLGFRRIVLQVDSKIVVQARLN" mobile_element 39264412..39264694 /note="source:scaffold_6_CACTA_0705 232 512" /mobile_element_type="transposon:TIR/CACTA" gene complement(39264673..39269172) /locus_tag="TCM_026609" /note="dbxref CacaoGD:Thecc1EG026609" mRNA complement(join(39264673..39265168,39266601..39266754, 39268533..39269172)) /locus_tag="TCM_026609" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG018326t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.19 coverage" CDS complement(join(39264890..39265168,39266601..39266754, 39268533..39268636)) /locus_tag="TCM_026609" /note="paralog of Thecc1EG018326t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11432.1" /translation="MFACLKAKRHEDGVVQTFFTKKKWRAFIRGDYGLICHFTFPGAL SLLAQLCGVSILIAVLYSREIREAMPTSLDNGIVVLRSLALKIAYAVGSVPPTLDHTL ITLIPKVESLEKITQFRPINLCSVSLKLFIKILVDQLRPMLEGLVGRSQSSFIPKRQA INNVIVVQEAIHTDNSIL" mobile_element 39265924..39266366 /note="source:scaffold_10_CACTA_0130 7395 7852" /mobile_element_type="transposon:TIR/CACTA" mobile_element 39267154..39267321 /note="source:CACAO_Mutator_E1376_scaffold_6 1852 2022" /mobile_element_type="transposon:TIR/Mutator" mobile_element 39267579..39267658 /note="source:CACAO_Mutator_E1376_scaffold_6 1942 2022" /mobile_element_type="transposon:TIR/Mutator" mobile_element 39267671..39267713 /note="source:CACAO_Mutator_E1376_scaffold_6 1980 2022" /mobile_element_type="transposon:TIR/Mutator" gene complement(39268127..39275593) /locus_tag="TCM_026610" /note="dbxref CacaoGD:Thecc1EG026610" mRNA complement(join(39268127..39268221,39271093..39271659, 39273450..39274715,39275244..39275593)) /locus_tag="TCM_026610" /product="Kinase superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:frave:gene21869.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026530t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s02080.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1312t8" gene 39269085..39272618 /locus_tag="TCM_026611" /note="dbxref CacaoGD:Thecc1EG026611" mRNA join(39269085..39269266,39271308..39271546, 39272292..39272618) /locus_tag="TCM_026611" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.48 coverage" CDS join(39269229..39269266,39271308..39271546, 39272292..39272596) /locus_tag="TCM_026611" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11437.1" /translation="MHSSLLSVDKRIRLKAESYKRKAPLLFSSDHYEDIEYEFEGIKV TWYKGKHSPEKEIIYSRALDDKNYYTLVFHPKDRDIIMERYLNHVLQEAFATQQSGKD PTACLESLIEALAAAKEKKIEEEDAKTLEIAEEEEIEEEIAKKEEIEEKDAKTLETVE EKEIEEKTVEEEETEEEDAKILETAEEKNKKEE" mRNA complement(join(39271155..39271659,39273450..39274715, 39275135..39275440)) /locus_tag="TCM_026610" /product="Kinase superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:frave:gene21869.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026530t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s02080.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00907t00002; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1312t8" mRNA complement(join(39271325..39271659,39273450..39274790)) /locus_tag="TCM_026610" /product="Kinase superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:frave:gene21869.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026530t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s02080.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g05455t00001; alternateUTRof:Thecc1EG026610t2; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1312t8" mRNA complement(join(39273449..39274394,39275244..39275448)) /locus_tag="TCM_026610" /product="Kinase superfamily protein, putative isoform 3" /inference="alignment:exonerate- protein:2:frave:gene21869.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026530t1" /inference="similar to AA sequence:ricco:30128.m008786" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1312t9; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1312t8" CDS complement(join(39273687..39274394,39275244..39275342)) /locus_tag="TCM_026610" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30128.m008786; paralog of Thecc1EG026530t1" /codon_start=1 /product="Kinase superfamily protein, putative isoform 3" /protein_id="EOY11435.1" /db_xref="TAIR:AT1G16150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I7Q8" /translation="MTLTISIKALPFFSHMDADAWHDLFIYLHRLQPMSVHKNVLKLI GCCLETQNPLLVYEFGGEKTLKKYILDVHEGQPEPLTWKSRIRIAMDIANAVAYLHTA LARPIIHRGLSLISIVLDSKHVAKLSEFSLSIAIPEGKSHVEDAISGITGYMAPEVWK GSKINEKADVYSFGRLLFELLTGRNNVPEYYAAEDAIVEEFVQSYVESNRLIEIVDQN ISSEGINRDELVAFAKIALSCTEENPEDRPTITDVAKQLRQLHKASPCIT" CDS complement(join(39273687..39274715,39275244..39275342)) /locus_tag="TCM_026610" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG026530t1" /codon_start=1 /product="Kinase superfamily protein, putative isoform 1" /protein_id="EOY11433.1" /db_xref="Phytozome:POPTR_0013s02080.1" /db_xref="TAIR:AT3G57750.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I7Q8" /translation="MTLTISIKALPFFSHMDADAWHDLFIYLHRLQPKEGKMFSIFTR RTQTKDEGPLLKNGSMLLEKLIASCNGKCNPIRTFSAEELSKATNGFNVEQEISRYVH FVLYKGFLDGREISVKRYEIRESKYLETAITDIVIGSQMSVHKNVLKLIGCCLETQNP LLVYEFGGEKTLKKYILDVHEGQPEPLTWKSRIRIAMDIANAVAYLHTALARPIIHRG LSLISIVLDSKHVAKLSEFSLSIAIPEGKSHVEDAISGITGYMAPEVWKGSKINEKAD VYSFGRLLFELLTGRNNVPEYYAAEDAIVEEFVQSYVESNRLIEIVDQNISSEGINRD ELVAFAKIALSCTEENPEDRPTITDVAKQLRQLHKASPCIT" CDS complement(39273687..39274703) /locus_tag="TCM_026610" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG026530t1" /codon_start=1 /product="Kinase superfamily protein, putative isoform 2" /protein_id="EOY11434.1" /db_xref="Phytozome:POPTR_0013s02080.1" /db_xref="TAIR:AT3G57750.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I7Q8" /translation="MFSIFTRRTQTKDEGPLLKNGSMLLEKLIASCNGKCNPIRTFSA EELSKATNGFNVEQEISRYVHFVLYKGFLDGREISVKRYEIRESKYLETAITDIVIGS QMSVHKNVLKLIGCCLETQNPLLVYEFGGEKTLKKYILDVHEGQPEPLTWKSRIRIAM DIANAVAYLHTALARPIIHRGLSLISIVLDSKHVAKLSEFSLSIAIPEGKSHVEDAIS GITGYMAPEVWKGSKINEKADVYSFGRLLFELLTGRNNVPEYYAAEDAIVEEFVQSYV ESNRLIEIVDQNISSEGINRDELVAFAKIALSCTEENPEDRPTITDVAKQLRQLHKAS PCIT" CDS complement(39273687..39274703) /locus_tag="TCM_026610" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG026530t1" /codon_start=1 /product="Kinase superfamily protein, putative isoform 2" /protein_id="EOY11436.1" /db_xref="Phytozome:POPTR_0013s02080.1" /db_xref="TAIR:AT3G57750.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I7Q8" /translation="MFSIFTRRTQTKDEGPLLKNGSMLLEKLIASCNGKCNPIRTFSA EELSKATNGFNVEQEISRYVHFVLYKGFLDGREISVKRYEIRESKYLETAITDIVIGS QMSVHKNVLKLIGCCLETQNPLLVYEFGGEKTLKKYILDVHEGQPEPLTWKSRIRIAM DIANAVAYLHTALARPIIHRGLSLISIVLDSKHVAKLSEFSLSIAIPEGKSHVEDAIS GITGYMAPEVWKGSKINEKADVYSFGRLLFELLTGRNNVPEYYAAEDAIVEEFVQSYV ESNRLIEIVDQNISSEGINRDELVAFAKIALSCTEENPEDRPTITDVAKQLRQLHKAS PCIT" gene 39275665..39278931 /locus_tag="TCM_026613" /note="dbxref CacaoGD:Thecc1EG026613" mRNA join(39275665..39276148,39276735..39276814, 39276996..39277056,39277296..39277353,39277501..>39277514) /locus_tag="TCM_026613" /product="Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000003001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026637t1" /inference="similar to AA sequence:ricco:30128.m008731" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1839t1; inference alignment:Newbler:10:TSA:cgbaP1_g06874t00001" mRNA join(39275688..39276148,39276735..39276814, 39276996..39277056,39277296..39277353,39277518..39277575, 39277982..39278054,39278361..39278481,39278597..39278931) /locus_tag="TCM_026613" /product="Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000003001" /inference="similar to AA sequence:ricco:30128.m008731" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g06874t00001" CDS join(39275810..39276148,39276735..39276814, 39276996..39277056,39277296..39277353,39277518..39277575, 39277982..39278054,39278361..39278453) /locus_tag="TCM_026613" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30128.m008731" /codon_start=1 /product="Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein isoform 1" /protein_id="EOY11438.1" /db_xref="TAIR:AT5G27390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K4A6" /translation="MNFYLPSLMALLLSLSLHPPKPPQNPKLTSLNPPVPTSVLKTLN IRRQFIINSTSLCIILWAPQNPVPQSLAEPSTTSKPALNIANTKSWFQFYGDGFAIRV PPEFEDIMEPEDFNAGASLYGDKAKPRTFAARFASTDGSEVLSVVIRRTNQLKITFLE AQDITDLGSIKEAARIFVPGGATLYNARTIKIKEDEGFKTYYFYEFGRDEQHIALVAT VNSGKAVIAGATAPQSKWDDDGVKLRSAALSLTVL" CDS join(39275810..39276148,39276735..39276814, 39276996..39277056,39277296..39277353,39277501..>39277514) /locus_tag="TCM_026613" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30128.m008731; paralog of Thecc1EG026637t1" /codon_start=1 /product="Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein isoform 2" /protein_id="EOY11439.1" /db_xref="TAIR:AT5G27390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K4A6" /translation="MNFYLPSLMALLLSLSLHPPKPPQNPKLTSLNPPVPTSVLKTLN IRRQFIINSTSLCIILWAPQNPVPQSLAEPSTTSKPALNIANTKSWFQFYGDGFAIRV PPEFEDIMEPEDFNAGASLYGDKAKPRTFAARFASTDGSEVLSVVIRRTNQLKITFLE AQDITDLGSIKEAARIFVPAMVQW" gene 39279520..39282233 /locus_tag="TCM_026614" /note="dbxref CacaoGD:Thecc1EG026614" mRNA join(39279520..39279813,39280253..39280350, 39280443..39282233) /locus_tag="TCM_026614" /product="Kinase superfamily protein, putative isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026618t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s02080.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00388t00003" mRNA join(39279604..39279813,39280253..39281414) /locus_tag="TCM_026614" /product="Kinase superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30128.m008797" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026618t1" /inference="similar to AA sequence:ricco:30128.m008790" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaL_g09605t00001; inference alignment:Newbler:10:TSA:cgbaP2_g00388t00003; inference alignment:Newbler:10:TSA:cgbaP1_g00147t00001" CDS join(39280258..39280350,39280443..39281240) /locus_tag="TCM_026614" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG026618t1" /codon_start=1 /product="Kinase superfamily protein, putative isoform 1" /protein_id="EOY11440.1" /db_xref="Phytozome:POPTR_0013s02080.1" /db_xref="TAIR:AT3G57710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I7Q8" /translation="MFTCLKVKRHEDEEEEKEKFFIKNGGVLLEEIFVEDVGYKLYKG FLKDRPSLVKKYNSEWSFLRRNPYTDIAIGSQMSVHKNVLKVLGCCLETRKPIIVYEF AGSKILSTCISATNDEPLPWKCRLKIATGIASAVAYLHTAFSRPVIHRDIKCSNILLD QNNVPKLIDFGLCISIPKGQTHVIDDLVLWRILNLTPEYKDRGYLTEKYDVYMFGMFP IQLLSGQNAGYILARHGIENLKNAINSRIRNEGFALKQLQDCTTLFFRCISSDEEERP TMVEVAKELKRIDQSFPSPC" CDS 39280578..39281240 /locus_tag="TCM_026614" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30128.m008790; paralog of Thecc1EG026618t1" /codon_start=1 /product="Kinase superfamily protein, putative isoform 2" /protein_id="EOY11441.1" /db_xref="TAIR:AT1G21270.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I7Q8" /translation="MSVHKNVLKVLGCCLETRKPIIVYEFAGSKILSTCISATNDEPL PWKCRLKIATGIASAVAYLHTAFSRPVIHRDIKCSNILLDQNNVPKLIDFGLCISIPK GQTHVIDDLVLWRILNLTPEYKDRGYLTEKYDVYMFGMFPIQLLSGQNAGYILARHGI ENLKNAINSRIRNEGFALKQLQDCTTLFFRCISSDEEERPTMVEVAKELKRIDQSFPS PC" gene 39283249..39284514 /locus_tag="TCM_026615" /note="dbxref CacaoGD:Thecc1EG026615" mRNA 39283249..39284514 /locus_tag="TCM_026615" /product="Kinase superfamily protein, putative" /inference="alignment:exonerate-protein:2:frave:gene25418" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026530t1" /inference="similar to AA sequence:ricco:30128.m008790" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00147t00001; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2382t1" CDS 39283311..39284348 /locus_tag="TCM_026615" /note="dbxref ricco:30128.m008790; paralog of Thecc1EG026530t1" /codon_start=1 /product="Kinase superfamily protein, putative" /protein_id="EOY11442.1" /db_xref="TAIR:AT3G57750.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I7Q8" /translation="MPHSYFFTISAALLGKMFACLKVKRHEDNQTFFTKNGAALLEEL IAFCNGRSNPIRHFSTNELLTATNYYDANQMFLQSGFYKLYKGSLNYRPIFVKKYHNY RIWRGVAAKDIAVGSQMSVHKNVLKVLGCCLETETPIIVYEFAGTESLSTCISATNVE PLPWKCRLKIAVGIANAVAYLHTAFSRPVIHRSIHCSSLVLDQNNVPKLIDFGLCISI PEGQSHVKDAIRGRAEWVSPEYWDRGHLTEKADVYLFGKLLIELLTGQQAVHFMMEHD ITDIGKVSAEKLSNSVDSRIKNEGIDQEQLLDFATLSLRCISFEEEKRPTMIEVGKEL RQIDQACPLPC" gene 39285361..39295853 /locus_tag="TCM_026616" /note="dbxref CacaoGD:Thecc1EG026616" mRNA join(39285361..39285497,39285979..39286147, 39295760..39295853) /locus_tag="TCM_026616" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026610t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g14342t00001" CDS join(39285991..39286147,39295760..39295797) /locus_tag="TCM_026616" /note="paralog of Thecc1EG026610t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11443.1" /translation="MCSSFTRRTQTKDEGPLLKNGSMLLEKLIASCNGKCNPIRTFSA EELSKATNVFYNCCLNAPQN" gene 39287999..39289116 /locus_tag="TCM_026617" /note="dbxref CacaoGD:Thecc1EG026617" mRNA join(39287999..39288281,39288396..39289116) /locus_tag="TCM_026617" /product="Kinase superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30128.m008786" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026527t1" /inference="similar to AA sequence:ricco:30128.m008786" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.22 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc3026t1" CDS join(39288059..39288281,39288396..39288742) /locus_tag="TCM_026617" /note="dbxref ricco:30128.m008786; paralog of Thecc1EG026527t1" /codon_start=1 /product="Kinase superfamily protein, putative" /protein_id="EOY11444.1" /db_xref="TAIR:AT1G16260.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I7Q8" /translation="MRVHKNVLKVIGCCLETEIPTIVYEFAGTKRLSTCISATNVQPL SWKFRLKIAIGLANAVAYLHTAFSRPVIHRGSTGWWVPPEYWARGYITKKVDVYQFGL FLFELLSGKGLVYLPRDDTLDTGELSVERFIDAVDSRIKNEGIDLEQLSDFATLIVRC TSYDEENRPTMIEVGKELKQIDQSFTSLC" gene 39290939..39292042 /locus_tag="TCM_026618" /note="dbxref CacaoGD:Thecc1EG026618" mRNA 39290939..39292042 /locus_tag="TCM_026618" /product="Kinase superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30128.m008797.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026614t1" /inference="similar to AA sequence:ricco:30128.m008786" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.17 coverage" CDS 39291000..39291836 /locus_tag="TCM_026618" /note="dbxref ricco:30128.m008786; paralog of Thecc1EG026614t1" /codon_start=1 /product="Kinase superfamily protein, putative" /protein_id="EOY11445.1" /db_xref="TAIR:AT3G57700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I7Q8" /translation="MRATNDYDARQIFVEDVGYKLYKGFLKDRPSLVKKYNSEWSFLR RNPYTDIAIGSQMSVHKNVLKVIGCCLETELPIIVYEFAGSKILCTCISATNDEPLPR KCRLKIAIGIASAVAYLHTAFSRPVIHRDIICSNILLDQNNVPKLIDFGLCISIPEGQ THVIDDLTVGRTLNLAPEYKDRGYLTEKVDVYQFGLLLIELSSGQDIVSLCCEHNISL GIEIHIDAVHNRIRNEGIDQFQDFKTLIRKCTSFEEEDRPTMIEVAKELRRIDQSFTS PS" mobile_element 39293339..39294317 /note="source:scaffold_5_CACTA_0615 243 1209" /mobile_element_type="transposon:TIR/CACTA" gene 39293905..39298215 /locus_tag="TCM_026619" /note="dbxref CacaoGD:Thecc1EG026619" mRNA join(39293905..39294111,39294475..39294789, 39296321..39296364,39296480..39296521,39297093..39298215) /locus_tag="TCM_026619" /product="Kinase superfamily protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026615t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.27 coverage" CDS join(39294092..39294111,39294475..39294789, 39296321..39296364,39296480..39296521,39297093..39297595) /locus_tag="TCM_026619" /note="paralog of Thecc1EG026615t1" /codon_start=1 /product="Kinase superfamily protein" /protein_id="EOY11446.1" /translation="MKNGDMKTLNRAPEHVDRGYLTEKVDVYEFGLLLFELLSGQELM SFCWEREIHYHRYLRIEMLINALHNGIRNEGIDQFQDFETLILKCTSFQEEERPTMIE VAKELRRIDKFALLLIYGGILLMPGTLSCPIVMFSISAEEIIAFCNDRSNPIRHFSAK ELLRAINNFDARQIFVRKGRYTLYKGSLKDRPIFVKKYCYGDDPRFDFAFKDIAIGSQ MSVHKNVLKVLGLETKIPPIVYEFAGTEILSPCISAADVQPLSWKCRLKIAIGIVDAV AYLHNAFSRPVIHREIDCSNIILDQNNVPKL" gene 39298436..39299894 /locus_tag="TCM_026620" /note="dbxref CacaoGD:Thecc1EG026620" mRNA join(39298436..39298609,39299141..39299223, 39299318..39299894) /locus_tag="TCM_026620" /product="Kinase superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30128.m008796" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026615t1" /inference="similar to AA sequence:ricco:30128.m008790" /note="quality class is medium, express is medium, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.58 coverage" CDS join(39298485..39298609,39299141..39299223, 39299318..39299775) /locus_tag="TCM_026620" /note="dbxref ricco:30128.m008790; paralog of Thecc1EG026615t1" /codon_start=1 /product="Kinase superfamily protein, putative" /protein_id="EOY11447.1" /db_xref="TAIR:AT3G57750.2" /db_xref="UniProtKB/TrEMBL:UniRef50_D7TL84" /translation="MTEERSQNDAASSWKFFRYDVDHFNQKLCTSSHIWRNLTDAWSN PVRHFSAKELLRATTNYDTSQIFVEDTAIGSQMSVHKNVFKVIGCCLETEVPTIVYEF AGTNIFSTCISGTDVQLLPWKSRLKIAIGLANVLAYLHTAFSRPVIHRDIKSSNIILD QNNAPKLIDFRLCISIPEGQSPLEGDVIRRTEWLTPPENWSTSYLTEKADVYQFGMLL IEF" gene 39300482..39301341 /locus_tag="TCM_026621" /note="dbxref CacaoGD:Thecc1EG026621" mRNA 39300482..39301341 /locus_tag="TCM_026621" /product="Plant invertase/pectin methylesterase inhibitor superfamily protein, putative" /inference="alignment:exonerate-protein:2:frave:gene02877" /inference="similar to AA sequence:Phytozome:POPTR_0005s00890.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc7298t1" CDS 39300577..39301128 /locus_tag="TCM_026621" /codon_start=1 /product="Plant invertase/pectin methylesterase inhibitor superfamily protein, putative" /protein_id="EOY11448.1" /db_xref="Phytozome:POPTR_0005s00890.1" /translation="MASPQCYRLVLALLATSLFINPAWTDEATQNLIDHICRRMEEYA FCDNTFNQNLKGRHADMAAVTLITIEQAVSHATNTHSFIARLLKKATDPADKKALTTC QDAYHLVMGGFQEAAAAFFLKDYDSMLLSERPTPRAQAGCTAIFNTPPNPASPVGDRN RQMRILIAMAIAAGTELTRPLDS" gene 39304167..39310914 /locus_tag="TCM_026622" /note="dbxref CacaoGD:Thecc1EG026622" mRNA join(39304167..39304650,39304849..39305172, 39305303..39305390,39306220..39306399,39306570..39306677, 39306772..39306831,39307199..39307288,39307967..39308101, 39308747..39308891,39308984..39309157,39309654..39309717, 39309837..39309906,39310027..39310132,39310229..39310914) /locus_tag="TCM_026622" /product="Sucrose nonfermenting 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000091001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG046785t1" /inference="similar to AA sequence:Phytozome:GSVIVT01000091001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04278t00001" CDS join(39305048..39305172,39305303..39305390, 39306220..39306399,39306570..39306677,39306772..39306831, 39307199..39307288,39307967..39308101,39308747..39308891, 39308984..39309157,39309654..39309717,39309837..39309906, 39310027..39310132,39310229..39310323) /locus_tag="TCM_026622" /note="paralog of Thecc1EG046785t1" /codon_start=1 /product="Sucrose nonfermenting 4" /protein_id="EOY11449.1" /db_xref="Phytozome:GSVIVT01000091001" /db_xref="TAIR:AT1G09020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q944A6" /translation="MFASGPETGQENSGVSGPLLIPMRFVWPYGGRRVFLSGSFTRWS EHIPMSPMEGCPTVFQVICSLSPGYHQFKFYVDGEWRHDEHQPFVNGNYGVVNTVFIA REPDMVPPTSSPETPGRSNMDVDDVFIRSEPVPTISDADLEVSRHRISAFLSRHTAYE LLPESGKVIALDVNIAVKQAFHILHEQGIPVAPLWDSCKGQFVGVLSALDFILILREL GNHGSNLTEEELETHTISAWKEGKVQLSRQIDGSARSYPRCLVHAGPYDSLKDVALKI LKGKVATVPITHSSAQDGSFPQLLHLATLSEILKCICRHFKHSSSSLPILQQPICSIP LGTWVPKIGESNGRPLAMLRPNASLGAALSLLVQAEVSSIPIVDENDSLLDIYSRSDI TALANNKAYAQIHLDEMSIHQALQLGQDANSFNGQRCQMCLRSDTLHKVMERLANPGA RRLVIVEAGSKRVEGIISLSDVFRFLLGV" gene 39311694..39312532 /locus_tag="TCM_026623" /note="dbxref CacaoGD:Thecc1EG026623" mRNA join(39311694..39311774,39311882..39311983, 39312071..39312099,39312216..39312532) /locus_tag="TCM_026623" /product="Ribosomal protein S27" /inference="alignment:exonerate- protein:2:ricco:30128.m008573" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG017373t1" /inference="similar to AA sequence:frave:gene22874" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02039t00001" CDS join(39311772..39311774,39311882..39311983, 39312071..39312099,39312216..39312342) /locus_tag="TCM_026623" /note="dbxref frave:gene22874; paralog of Thecc1EG017373t1" /codon_start=1 /product="Ribosomal protein S27" /protein_id="EOY11450.1" /db_xref="TAIR:AT3G61110.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M2F1" /translation="MVLQNDVDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFN ITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD" gene complement(39312890..39322573) /locus_tag="TCM_026624" /note="dbxref CacaoGD:Thecc1EG026624" mRNA complement(join(39312890..39313804,39313950..39314024, 39315191..39315337,39315756..39315962,39316046..39316328, 39316406..39316584,39316674..39316991,39317255..39317311, 39317396..39317679,39317865..39317945,39318160..39318535, 39318641..39318900,39319777..39319951,39320272..39320349, 39320775..39320837,39321020..39321115,39321308..39321424, 39322133..39322292)) /locus_tag="TCM_026624" /product="DIRP,Myb-like DNA-binding domain, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g37820.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021168t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s02120.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:PASA:2:TSA:puevd3b025757t1a3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11626t4" mRNA complement(join(39312890..39313804,39313950..39314240, 39314331..39314546,39314676..39314783,39315176..39315337, 39315756..39315962,39316046..39316328,39316406..39316584, 39316674..39316991,39317255..39317317,39317396..39317679, 39317865..39317945,39318160..39318535,39318641..39318900, 39319777..39319951,39320272..39320349,39320775..39320837, 39321020..39321115,39321308..39321424,39322133..39322292)) /locus_tag="TCM_026624" /product="DIRP,Myb-like DNA-binding domain, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g37820.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021168t1" /inference="similar to AA sequence:Phytozome:Glyma20g37820.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:PASA:2:TSA:puevd3b025757t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11626t4" mRNA complement(join(39313365..39313804,39313950..39314240, 39314331..39314546,39314676..39314783,39315176..39315337, 39315756..39315962,39316046..39316328,39316406..39316584, 39316674..39316991,39317255..39317311,39317396..39317679, 39317865..39318001,39318135..39318535,39318641..39318900, 39319777..39319951,39320272..39320349,39320775..39320837, 39321020..39321536,39322133..39322573)) /locus_tag="TCM_026624" /product="DIRP,Myb-like DNA-binding domain, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g37820.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021168t1" /inference="similar to AA sequence:Phytozome:Glyma20g37820.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11626t4" mRNA complement(join(39313448..39313804,39313950..39314240, 39314331..39314546,39314676..39314783,39315176..39315337, 39315756..39315962,39316046..39316328,39316406..39316584, 39316674..39316991,39317255..39317311,39317396..39317679, 39317865..39317945,39318160..39318535,39318641..39318900, 39319777..39319951,39320272..39320349,39320775..39320837, 39321020..39321115,39321308..39321424,39322133..39322274)) /locus_tag="TCM_026624" /product="DIRP,Myb-like DNA-binding domain, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g37820.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021168t1" /inference="similar to AA sequence:Phytozome:Glyma20g37820.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11626t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11626t4; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1209t8" CDS complement(join(39313640..39313804,39313950..39314024, 39315191..39315337,39315756..39315962,39316046..39316328, 39316406..39316584,39316674..39316991,39317255..39317311, 39317396..39317679,39317865..39317945,39318160..39318535, 39318641..39318900,39319777..39319951,39320272..39320349, 39320775..39320837,39321020..39321115,39321308..39321412)) /locus_tag="TCM_026624" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG021168t1" /codon_start=1 /product="DIRP,Myb-like DNA-binding domain, putative isoform 4" /protein_id="EOY11454.1" /db_xref="Phytozome:POPTR_0013s02120.1" /db_xref="TAIR:AT3G05380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RF70" /translation="MAPTRKSKSVNKRYSSVYEVSPDKDAGNSSKNKPKKKLADKLGS QWSKEEIERFYKAYREYGKDWKKVAAAVHNRSTEMVEALYLMNRAYLSLPDGTASVIG LIAMMTDHYSVLRGSDCERESNEPSEIPQKAQKRKRAKVHLGTSKEGVVQPQSIASSQ GCLSLLKRAGLNGIHPHAVRKRTPRVPVSYSYRRNDTESYIPPNKRVKKSDADDNDAE HVAALTLTGALQRGGSPQVSQTPYKRAECRRSSPVQSYDRTSPQPETTKAKLDDSSYE CWMEGRPRGTEPVIGTHARDADPLMDMEVVGTIEGHRKGKKFYRKKMKVEETKNNLSD DGGEACSGTEERIRGSTLKGKVDMEITSAKSEQLSPWSQRKRSNKKLVFGDESSSIDA LLTLANLSTSMLPTSIMESESSVKLKENRITLESVDKSSAPEAASTSHHRDNIKHLRP NEKVLDSITGAEEATTRKLKVGRNSAMDDNVVSEAKQKPEPTNNSWKRKRKSFSSKIS NAEASMDSHLQQSFDNEDMGEEDNKYLTKGKCGAQSSVQSRQWKSFRVSEDSSTNDDP KMAGIDSVVLTSQVPAPNPVSVPPKHQSRRKMNLRRAFLSTDRSSSKCTLKNQPIKQS VTQDRLKEQLSSCLSSNLARRWCSFEWFYSAIDYAWFAKREFVEYLNHVGLGHVPRLT RVEWGVIRSSLGKPRRFSERFLHEEREKLKHYRESVRQHYSQLRVGAREGLPTDLAYP LSVGQQVIAIHPKTREAHDGKVLTVDHDRCRVQFDSPELGVEFVMDIDCMPLNPLENM PEALRRQNLAFDKFSVTPKPSQVNSHSDFGGSTVFTSSGHLENGTSPVNMSANQIKVD ANRNILHAEAAVPYVVSAHQAAYGQPLTMAHIKGRETDTRAMSELNGASDKNEEQGPS ELIASCVATLLMIQTCTERQYPPADVAQIIDSAVTSLHPCFPQNLPIYREIQMCMGRI KTQILALIPT" CDS complement(join(39313640..39313804,39313950..39314240, 39314331..39314546,39314676..39314783,39315176..39315337, 39315756..39315962,39316046..39316328,39316406..39316584, 39316674..39316991,39317255..39317311,39317396..39317679, 39317865..39317945,39318160..39318535,39318641..39318900, 39319777..39319951,39320272..39320349,39320775..39320837, 39321020..39321115,39321308..39321412)) /locus_tag="TCM_026624" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG021168t1" /codon_start=1 /product="DIRP,Myb-like DNA-binding domain, putative isoform 3" /protein_id="EOY11453.1" /db_xref="Phytozome:Glyma20g37820.1" /db_xref="TAIR:AT3G05380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RF70" /translation="MAPTRKSKSVNKRYSSVYEVSPDKDAGNSSKNKPKKKLADKLGS QWSKEEIERFYKAYREYGKDWKKVAAAVHNRSTEMVEALYLMNRAYLSLPDGTASVIG LIAMMTDHYSVLRGSDCERESNEPSEIPQKAQKRKRAKVHLGTSKEGVVQPQSIASSQ GCLSLLKRAGLNGIHPHAVRKRTPRVPVSYSYRRNDTESYIPPNKRVKKSDADDNDAE HVAALTLTGALQRGGSPQVSQTPYKRAECRRSSPVQSYDRTSPQPETTKAKLDDSSYE CWMEGRPRGTEPVIGTHARDADPLMDMEVVGTIEGHRKGKKFYRKKMKVEETKNNLSD DGGEACSGTEERIRGSTLKGKVDMEITSAKSEQLSPWSQRKRSNKKLVFGDESSSIDA LLTLANLSTSMLPTSIMESESSVKLKENRITLESVDKSSAPEAASTSHHRDNIKHLRP NEKVLDSITGAEEATTRKLKVGRNSAMDDNVVSEAKQKPEPTNNSWKRKRKSFSSKIS NAEASMDSHLQQSFDNEDMGEEDNKYLTKGKCGAQSSVQSRQWKSFRVSEDSSTNDDP KMAGIDSVVLTSQVPAPNPVSVPPKHQSRRKMNLRRAFLSTDRSSSKCTLKNQPIKQS VTQDRLKEQLSSCLSSNLARRWCSFEWFYSAIDYAWFAKREFVEYLNHVGLGHVPRLT RVEWGVIRSSLGKPRRFSERFLHEEREKLKHYRESVRQHYSQLRVGAREGLPTDLAYP LSVGQQVIAIHPKTREAHDGKVLTVDHDRCRVQFDSPELGVEFVMDIDCMPLNPLENM PEALRRQNLAFDKFSVTPKPSQVNSHSDFGGSTVFTSSGHLENGTSPVNMSANQIKVD ANRNILHAEAAVPYVVSAHQAAYGQPLTMAHIKGRETDTRAMSELNGALDKKEALLME LRNTNNDISENQNGESCLKDSEPFKKHIATASSALVNLRQRNAYPANPLSPWQKPPTN SNFFGGLKSYVDSSLVSPESGSGVGEIVQGSRLKAHAMVDAAMKAMSSMKEGEDAFMR IGEALDSLDKRQFTYDIRMPVIKSREQENGSMDYRNHLVSCTSKPVAAGWATNPKSQE ASDKNEEQGPSELIASCVATLLMIQTCTERQYPPADVAQIIDSAVTSLHPCFPQNLPI YREIQMCMGRIKTQILALIPT" CDS complement(join(39313640..39313804,39313950..39314240, 39314331..39314546,39314676..39314783,39315176..39315337, 39315756..39315962,39316046..39316328,39316406..39316584, 39316674..39316991,39317255..39317317,39317396..39317679, 39317865..39317945,39318160..39318535,39318641..39318900, 39319777..39319951,39320272..39320349,39320775..39320837, 39321020..39321115,39321308..39321412)) /locus_tag="TCM_026624" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG021168t1" /codon_start=1 /product="DIRP,Myb-like DNA-binding domain, putative isoform 2" /protein_id="EOY11452.1" /db_xref="Phytozome:Glyma20g37820.1" /db_xref="TAIR:AT3G05380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RF70" /translation="MAPTRKSKSVNKRYSSVYEVSPDKDAGNSSKNKPKKKLADKLGS QWSKEEIERFYKAYREYGKDWKKVAAAVHNRSTEMVEALYLMNRAYLSLPDGTASVIG LIAMMTDHYSVLRGSDCERESNEPSEIPQKAQKRKRAKVHLGTSKEGVVQPQSIASSQ GCLSLLKRAGLNGIHPHAVRKRTPRVPVSYSYRRNDTESYIPPNKRVKKSDADDNDAE HVAALTLTGALQRGGSPQVSQTPYKRAECRRSSPVQSYDRTSPQPETTKAKLDDSSYE CWMEGRPRGTEPVIGTHARDADPLMDMEVVGTIEGHRKGKKFYRKKMKVEETKNNLSD DGGEACSGTEERIRGSTLKGKVDMEITSAKSEQLSPWSQRKRSNKKLVFGDESSSIDA LLTLANLSTSMLPTSIMESESSVKLKENRITLESVDKSSAPEAASTSHHRDNIKHLRP NEKVLDSITGAEEATTRKLKVGRNSAMDDNVVSEAKQKPEPTNNSWKRKRKSFSSKLQ ISNAEASMDSHLQQSFDNEDMGEEDNKYLTKGKCGAQSSVQSRQWKSFRVSEDSSTND DPKMAGIDSVVLTSQVPAPNPVSVPPKHQSRRKMNLRRAFLSTDRSSSKCTLKNQPIK QSVTQDRLKEQLSSCLSSNLARRWCSFEWFYSAIDYAWFAKREFVEYLNHVGLGHVPR LTRVEWGVIRSSLGKPRRFSERFLHEEREKLKHYRESVRQHYSQLRVGAREGLPTDLA YPLSVGQQVIAIHPKTREAHDGKVLTVDHDRCRVQFDSPELGVEFVMDIDCMPLNPLE NMPEALRRQNLAFDKFSVTPKPSQVNSHSDFGGSTVFTSSGHLENGTSPVNMSANQIK VDANRNILHAEAAVPYVVSAHQAAYGQPLTMAHIKGRETDTRAMSELNGALDKKEALL MELRNTNNDISENQNGESCLKDSEPFKKHIATASSALVNLRQRNAYPANPLSPWQKPP TNSNFFGGLKSYVDSSLVSPESGSGVGEIVQGSRLKAHAMVDAAMKAMSSMKEGEDAF MRIGEALDSLDKRQFTYDIRMPVIKSREQENGSMDYRNHLVSCTSKPVAAGWATNPKS QEASDKNEEQGPSELIASCVATLLMIQTCTERQYPPADVAQIIDSAVTSLHPCFPQNL PIYREIQMCMGRIKTQILALIPT" CDS complement(join(39313640..39313804,39313950..39314240, 39314331..39314546,39314676..39314783,39315176..39315337, 39315756..39315962,39316046..39316328,39316406..39316584, 39316674..39316991,39317255..39317311,39317396..39317679, 39317865..39318001,39318135..39318535,39318641..39318900, 39319777..39319951,39320272..39320349,39320775..39320837, 39321020..39321142)) /locus_tag="TCM_026624" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG021168t1" /codon_start=1 /product="DIRP,Myb-like DNA-binding domain, putative isoform 1" /protein_id="EOY11451.1" /db_xref="Phytozome:Glyma20g37820.1" /db_xref="TAIR:AT3G21430.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RF70" /translation="MDCCIYAMKKKLADKLGSQWSKEEIERFYKAYREYGKDWKKVAA AVHNRSTEMVEALYLMNRAYLSLPDGTASVIGLIAMMTDHYSVLRGSDCERESNEPSE IPQKAQKRKRAKVHLGTSKEGVVQPQSIASSQGCLSLLKRAGLNGIHPHAVRKRTPRV PVSYSYRRNDTESYIPPNKRVKKSDADDNDAEHVAALTLTGALQRGGSPQVSQTPYKR AECRRSSPVQSYDRTSPQPETTKAKLDDSSYECWMEGRPRGTEPVIGTHARDADPLMD MEVVGTIEGHRKGKKFYRKKMKVEETKNNLSDDGGEACSGTEERIRGSTLKGKVDMEI TSAKSEQLSPWSQRKRSNKKLVFGGLNLRSSIEFDSAYKLNIVFLFFFRYVDESSSID ALLTLANLSTSMLPTSIMESESSVKLKENRITLESVDKSSAPEAASTSHHRDNIKHLR PNEKVLDSITGAEEATTRKLKVGRNSAMDDNVVSEAKQKPEPTNNSWKRKRKSFSSKI SNAEASMDSHLQQSFDNEDMGEEDNKYLTKGKCGAQSSVQSRQWKSFRVSEDSSTNDD PKMAGIDSVVLTSQVPAPNPVSVPPKHQSRRKMNLRRAFLSTDRSSSKCTLKNQPIKQ SVTQDRLKEQLSSCLSSNLARRWCSFEWFYSAIDYAWFAKREFVEYLNHVGLGHVPRL TRVEWGVIRSSLGKPRRFSERFLHEEREKLKHYRESVRQHYSQLRVGAREGLPTDLAY PLSVGQQVIAIHPKTREAHDGKVLTVDHDRCRVQFDSPELGVEFVMDIDCMPLNPLEN MPEALRRQNLAFDKFSVTPKPSQVNSHSDFGGSTVFTSSGHLENGTSPVNMSANQIKV DANRNILHAEAAVPYVVSAHQAAYGQPLTMAHIKGRETDTRAMSELNGALDKKEALLM ELRNTNNDISENQNGESCLKDSEPFKKHIATASSALVNLRQRNAYPANPLSPWQKPPT NSNFFGGLKSYVDSSLVSPESGSGVGEIVQGSRLKAHAMVDAAMKAMSSMKEGEDAFM RIGEALDSLDKRQFTYDIRMPVIKSREQENGSMDYRNHLVSCTSKPVAAGWATNPKSQ EASDKNEEQGPSELIASCVATLLMIQTCTERQYPPADVAQIIDSAVTSLHPCFPQNLP IYREIQMCMGRIKTQILALIPT" gene 39324046..39334506 /locus_tag="TCM_026625" /note="dbxref CacaoGD:Thecc1EG026625" mRNA join(39324046..39324219,39324492..39324542, 39324767..39324839,39324935..39325053,39325170..39325243, 39325611..39325731,39325815..39325883,39326223..39326264, 39326542..39326619,39327035..39327093,39327186..39327270, 39327402..39327490,39327571..39328126) /locus_tag="TCM_026625" /product="Cyclin H,1 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma06g17280.2" /inference="similar to AA sequence:Phytozome:Glyma06g17280.2" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11618t3; inference alignment:Newbler:10:TSA:cgbaB_g08577t00001" mRNA join(39324046..39324219,39324492..39324542, 39324767..39324839,39324935..39325053,39325170..39325243, 39325611..39325731,39325815..39325883,39326223..39326264, 39326542..39326619,39327035..39327093,39327186..39327270, 39327402..39327490,39327574..39328126) /locus_tag="TCM_026625" /product="Cyclin H,1 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma06g17280.2" /inference="similar to AA sequence:Phytozome:Glyma06g17280.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11618t6; inference alignment:Newbler:10:TSA:cgbaB_g08577t00001" mRNA join(39324048..39324219,39324492..39324542, 39324767..39324839,39324935..39325053,39325170..39325243, 39325611..39325731,39325815..39325883,39326223..39326264, 39326542..39326619,39327035..39327093,39327186..39327270, 39327402..39327850,39328345..39328441,39328622..39328682, 39329622..39329911,39334162..39334506) /locus_tag="TCM_026625" /product="Cyclin-H1-1 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma06g17280.2" /inference="similar to AA sequence:Phytozome:Glyma06g17280.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g08577t00001" CDS join(39324160..39324219,39324492..39324542, 39324767..39324839,39324935..39325053,39325170..39325243, 39325611..39325731,39325815..39325883,39326223..39326264, 39326542..39326619,39327035..39327093,39327186..39327270, 39327402..39327850,39328345) /locus_tag="TCM_026625" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Cyclin-H1-1 isoform 1" /protein_id="EOY11455.1" /db_xref="Phytozome:Glyma06g17280.2" /db_xref="TAIR:AT5G27620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8W5S1" /translation="MADFQTSTHRAKWIFTPQGLVEKYRAANQRAIQTLEKYGTTQME VDADGSLSYPEPIARDNADKHSRAKPLSIEEEQFMRVFYENKLREVCSAFYFPNKIQA TALIYFKRFYLQWSVMEHHPKHIMLTCVYAACKIEENHVSAEELGKGISQDHQMILNY EMIVYQSLEFDLIVYAPYRSVEGFVNDMEEFCGAKDEQNQILKDLQETARIEVDKIML TDAPHLFPPGQLALAALRSANEMHKVLDFERYLRSILTRQNSEHTISQLIESLNAIDT WVRKYKFPTEKDMKHINRKLKSCWGHSSQDEYGPYNCFAFLRPYFICIFILIIDFLTA VRSGIRKGTNPIKVQTKFRMDHPLVNCYILVCTSESPRSMDTVVWFSSSQDFSRVQAI TVPHSPENQGYRSISFSSILMAEPPVAGVRTCSV" CDS join(39324160..39324219,39324492..39324542, 39324767..39324839,39324935..39325053,39325170..39325243, 39325611..39325731,39325815..39325883,39326223..39326264, 39326542..39326619,39327035..39327093,39327186..39327270, 39327402..39327490,39327571..39327649) /locus_tag="TCM_026625" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Cyclin H,1 isoform 3" /protein_id="EOY11457.1" /db_xref="Phytozome:Glyma06g17280.2" /db_xref="TAIR:AT5G27620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8W5S1" /translation="MADFQTSTHRAKWIFTPQGLVEKYRAANQRAIQTLEKYGTTQME VDADGSLSYPEPIARDNADKHSRAKPLSIEEEQFMRVFYENKLREVCSAFYFPNKIQA TALIYFKRFYLQWSVMEHHPKHIMLTCVYAACKIEENHVSAEELGKGISQDHQMILNY EMIVYQSLEFDLIVYAPYRSVEGFVNDMEEFCGAKDEQNQILKDLQETARIEVDKIML TDAPHLFPPGQLALAALRSANEMHKVLDFERYLRSILTRQNSEHTISQLIESLNAIDT WVRKYKFPTEKDMKHINRKLKSCWGHSSQDDSKKRDKKRHKSHKSSNEIPNGPSIG" CDS join(39324160..39324219,39324492..39324542, 39324767..39324839,39324935..39325053,39325170..39325243, 39325611..39325731,39325815..39325883,39326223..39326264, 39326542..39326619,39327035..39327093,39327186..39327270, 39327402..39327490,39327574..39327649) /locus_tag="TCM_026625" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Cyclin H,1 isoform 2" /protein_id="EOY11456.1" /db_xref="Phytozome:Glyma06g17280.2" /db_xref="TAIR:AT5G27620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8W5S1" /translation="MADFQTSTHRAKWIFTPQGLVEKYRAANQRAIQTLEKYGTTQME VDADGSLSYPEPIARDNADKHSRAKPLSIEEEQFMRVFYENKLREVCSAFYFPNKIQA TALIYFKRFYLQWSVMEHHPKHIMLTCVYAACKIEENHVSAEELGKGISQDHQMILNY EMIVYQSLEFDLIVYAPYRSVEGFVNDMEEFCGAKDEQNQILKDLQETARIEVDKIML TDAPHLFPPGQLALAALRSANEMHKVLDFERYLRSILTRQNSEHTISQLIESLNAIDT WVRKYKFPTEKDMKHINRKLKSCWGHSSQDDKKRDKKRHKSHKSSNEIPNGPSIG" gene 39328364..39329850 /locus_tag="TCM_026626" /note="dbxref CacaoGD:Thecc1EG026626" mRNA join(39328364..39328441,39328622..39328682, 39329622..39329850) /locus_tag="TCM_026626" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031088001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g14819t00001" CDS join(39328379..39328441,39328622..39328682, 39329622..39329839) /locus_tag="TCM_026626" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11458.1" /translation="MACFVSFSISVPLCSLQIPLKDRYPRKSGLCRLPGLPTTKTASY FPPPWSSNKGIFSVSGQHHPTILSKHFDEIVSCSLYVSSCTHMVITGYWVGPDIDDGW GFVEASIDQSS" gene 39330172..39331266 /locus_tag="TCM_026627" /note="dbxref CacaoGD:Thecc1EG026627" mRNA 39330172..39331266 /locus_tag="TCM_026627" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.39 coverage" CDS 39330229..39330630 /locus_tag="TCM_026627" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11459.1" /translation="MLLLFFFPYCYLKSYQYFHIVQMFECKKNFWGRDQFMHSYQAIP VFGLSQMELRSLSPGYNKMRCMALGHIFVHLQTGFWDSKREVGSDFRAFSLAASTQLD PTVSKRWILGSFWFKQFVLGWTAFMCPINGF" gene 39331712..39333152 /locus_tag="TCM_026628" /note="dbxref CacaoGD:Thecc1EG026628" mRNA 39331712..39333152 /locus_tag="TCM_026628" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.20 coverage" CDS 39332046..39332333 /locus_tag="TCM_026628" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11460.1" /translation="MLELAYTELLKLTWTIHDPFAFCPGKWEHQLQLQRQIALINWHT PLPKFRVGARWQGMQAVQVIKLNTASPWSEPVAATFILISFYQEKHHIVLH" gene complement(39333947..39335295) /locus_tag="TCM_026629" /note="dbxref CacaoGD:Thecc1EG026629" mRNA complement(39333947..39335295) /locus_tag="TCM_026629" /product="Nuclear transcription factor Y subunit B-4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031089001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004576t1" /inference="similar to AA sequence:Phytozome:GSVIVT01031089001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.92 coverage" CDS complement(39334638..39335072) /locus_tag="TCM_026629" /note="paralog of Thecc1EG004576t1" /codon_start=1 /product="Nuclear transcription factor Y subunit B-4" /protein_id="EOY11461.1" /db_xref="Phytozome:GSVIVT01031089001" /db_xref="TAIR:AT1G09030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I7Q2" /translation="MVDEQDQLLPIANVGRIMKQILPPSAKLSKEAKQTMQECATEFV SFVTGEASDKCHKENRKTVNGDDICWALSVLGFDNYAEAIVRYLHKYREAEREKASQN KATSSQDKDEESSEDKNGQPAQQTEAPPTPVTMGDNSVTEPS" gene complement(39335343..39341885) /locus_tag="TCM_026630" /note="dbxref CacaoGD:Thecc1EG026630" mRNA complement(join(39335343..39335614,39339759..39341511, 39341746..39341885)) /locus_tag="TCM_026630" /product="Methyltransferase, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s02010.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005248t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s02010.1" /note="quality class is strong, express is weak, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.25 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11612t1" CDS complement(39340040..39341455) /locus_tag="TCM_026630" /note="paralog of Thecc1EG005248t1" /codon_start=1 /product="Methyltransferase, putative" /protein_id="EOY11462.1" /db_xref="Phytozome:POPTR_0013s02010.1" /db_xref="TAIR:AT3G05390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9MA52" /translation="MKMRRSCFPRCGFARIMGWLRIVLGILVIIVSISSLFRFYSAGF FVHNEDICRHFYGIKDVYERFDVRALNDRVAEVLRTMESLQEKLETTLQQMEKNKDVL DQTNMTRLEHKKYLEVEVLRPLYSAHIALRQIRLPKIEGNGNGTLKEEPLINTFITEE IRKYITPKENRIVKVNFYGTEKIYNTIGHACVLMKKELQEYMDYDIGSYCKDDWNLAQ KLMVGGCDPLPRRRCLTRASKVYQKPYPINESLWKLPDDRNVRWGGYKCRNFGCLSSK NPKRGYTKCTGCFEMEKEKLKWVANSSSLAVDFLIRDVLAIKPGQVRIGLDYGVGTGT FAARMRELNVTIISTALNLGAPFNEIIALRGLIPLYATLNQRLPFFDNTMDLIHTTGF LDGWIDLLLMDFILYDWDRVLRPGGLLWIDRFFCNKKDLDDYMYMFLQFRYKKHKWVL APKSKDEVYLSAVLEKPPRAI" gene 39342197..39349254 /locus_tag="TCM_026631" /note="dbxref CacaoGD:Thecc1EG026631" mRNA join(39342197..39342285,39343059..39343233, 39344730..39345575,39346256..39349254) /locus_tag="TCM_026631" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene22506" /inference="similar to AA sequence:ricco:30128.m008803" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1599t1" mobile_element 39342579..39342780 /note="source:scaffold_9_CACTA_0946 17858 18062" /mobile_element_type="transposon:TIR/CACTA" CDS join(39344730..39345575,39346256..39348451) /locus_tag="TCM_026631" /note="dbxref ricco:30128.m008803" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11463.1" /db_xref="TAIR:AT1G09040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RF88" /translation="METVQLDLNHNLAEEPSPMQLLPPGSLDVSDIFGDPQISPRVGD KYQVEIPPMITGSEHLRLLMDPVDSEGSPYLAHSFLLGLPVPLMWTYEQDIDFEVEGQ GGLSKPDDGTKVDESVKSKKCRKAQSSKRKKNSELSAEQSDARLVYEKESNAENLECG MACKTNLFRPCEGKSSHLIPGSSCDSWSNTEVDGFLLGLYVFGKDFGQIKRFIGNKEM GDILSFYYGAFYRSDRYRRWSDGQKRRSRKNIYGRKIFTGWRQQELLSRLLTCVPDES KNNLLEVSRSFVEGRTSLENYVCYLKTTVGICALVEAVGIGNGKADLTGLAMEPPKTT QASPEIPSGKACSSLTSGDIIRFLTGGFRLSKARCNDIFWEAVWPRLLARGWHSEQPK NQCSVSSKHYLVFLLPGVKKFSRRKLVKGNHYFDSVSDVLSKVASEPKLLEIDAEGSG IRSCNEENGWVPGESSDQDDPPDRKPCYLKPRVSILSSNHMKFTVVDSSLVHGGKASK MRELRYAPIDLRFSSKPMQKDTQDSWKVNANHMLSKGEKCVTNAHHCEGIIASSTARH IKFTIVDTSLLHGGKACSVRELRYLPVKFEISSEINNSSGGSEDNSSDDSSYDHKPKI ADRLSSHGSVATDTKPSSEPVKADNLLKGDSNHSEGKYDNESSSQNPKNSWTADQGLL IHQDEKTNISEDTRSKRIIKHHFSRRAKFSHSVNLVPPTKRRKLTAHTNTATSPLAEN FSALSINLASPMKRQRLNACAKTETSHLTENISSNPINLVSPMKRRRLNACADTEQSH LTEKISADISEQAGLCCALQSQDEGSNDVPHVSHFQEKVSPISFSADGNPESMDTPHG SSEKLQSQLAIDSNPPLVPLDSQNGEPETAEADGSEFIIVNTYADLLETATNVCGEEQ QPIMNPRRQSRRSRPLTTRVLEALESGFLNMKRTQKVKHVQAQAIQFASPSRKARSRV KTTSKHGNAGGKTVDKKEGKGMDGTLSHSEDIISKAPEVAH" mobile_element complement(39351270..39351344) /note="source:CACAO_Mutator_E206_scaffold_1 7994 8077" /mobile_element_type="transposon:TIR/Mutator" mobile_element 39352097..39352161 /note="source:CACAO_M_S_E144962_F231_scaffold_10 1437 1506" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 39352236..39352316 /note="source:INTACT595_F266_scaffold_7-int 1029 1106" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 39356544..39360804 /locus_tag="TCM_026632" /note="dbxref CacaoGD:Thecc1EG026632" mRNA join(39356544..39356661,39357083..39357373, 39358438..39358834,39359293..39360804) /locus_tag="TCM_026632" /product="C2H2 and C2HC zinc fingers superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Sb03g045120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004569t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s02730.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.56 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc107t9" CDS join(39357139..39357373,39358438..39358834, 39359293..39360286) /locus_tag="TCM_026632" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG004569t1" /codon_start=1 /product="C2H2 and C2HC zinc fingers superfamily protein, putative isoform 1" /protein_id="EOY11464.1" /db_xref="Phytozome:POPTR_0005s02730.1" /db_xref="TAIR:AT3G50700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HPZ8" /translation="MSNITAGDGGSLSSGNTAGEEVHQQQQQQQQQQQQQEQVNHFHG LNSLPPSTNSNGSTTTPQEQPPPAKKKRNLPGTPDPNAEVIALSPKTLLATNRFVCEI CKKGFQRDQNLQLHRRGHNLPWKLRQRTSTEIRKRVYVCPEPSCVHHNPARALGDLTG IKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTKEYKCDCGTIFSRRDSFITH RAFCDALSEENNKANQGLVPNVGSNLQAQVPELIPAIPINNNPNTSAMNISDPFSHDT KSPLQPLSMAGSMFSNNPGNLFSGAKSNVSNPSSSCLQLNANNSSTLFEGNGHLFSGS ASMSATALLQKAAQMGATATTGSLNSPLMGKSFTTSMAPPSFVSMQTPQSNQPQMLGA DAGFTNQFMQKSQEEIRSDQFFNANGGVDHQSSAVNNMAMFSGVFDQNNALLKSIEND QRRASSNSGLSTPRSGGANPSGLSGFSGDMMTVDFLGIGGSRPRNLLEKQHHHHHQPQ QDHLEFGGFAQARLQGLSHFQQHAAVEKPMWKV" mRNA join(39358118..39358318,39358438..39358834, 39359293..39360478) /locus_tag="TCM_026632" /product="C2H2 and C2HC zinc fingers superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Sb03g045120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004569t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s02730.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc101t17; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc107t9" CDS join(39358276..39358318,39358438..39358834, 39359293..39360286) /locus_tag="TCM_026632" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG004569t1" /codon_start=1 /product="C2H2 and C2HC zinc fingers superfamily protein, putative isoform 2" /protein_id="EOY11465.1" /db_xref="Phytozome:POPTR_0005s02730.1" /db_xref="TAIR:AT3G50700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6HPZ8" /translation="MNNIMFFNSQRLFPNPNAEVIALSPKTLLATNRFVCEICKKGFQ RDQNLQLHRRGHNLPWKLRQRTSTEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFC RKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTKEYKCDCGTIFSRRDSFITHRAFCDA LSEENNKANQGLVPNVGSNLQAQVPELIPAIPINNNPNTSAMNISDPFSHDTKSPLQP LSMAGSMFSNNPGNLFSGAKSNVSNPSSSCLQLNANNSSTLFEGNGHLFSGSASMSAT ALLQKAAQMGATATTGSLNSPLMGKSFTTSMAPPSFVSMQTPQSNQPQMLGADAGFTN QFMQKSQEEIRSDQFFNANGGVDHQSSAVNNMAMFSGVFDQNNALLKSIENDQRRASS NSGLSTPRSGGANPSGLSGFSGDMMTVDFLGIGGSRPRNLLEKQHHHHHQPQQDHLEF GGFAQARLQGLSHFQQHAAVEKPMWKV" gene 39360850..39362929 /locus_tag="TCM_026633" /note="dbxref CacaoGD:Thecc1EG026633" mRNA join(39360850..39361431,39361497..39361838, 39362021..39362240,39362470..39362929) /locus_tag="TCM_026633" /product="Photosystem II reaction center PsbP family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031113001" /inference="similar to AA sequence:Phytozome:GSVIVT01031113001" /note="quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc22t6_C2" CDS join(39361380..39361431,39361497..39361838, 39362021..39362240,39362470..39362776) /locus_tag="TCM_026633" /codon_start=1 /product="Photosystem II reaction center PsbP family protein" /protein_id="EOY11466.1" /db_xref="Phytozome:GSVIVT01031113001" /db_xref="TAIR:AT3G05410.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I4K9" /translation="MQNLRKHLRKPRASKLDHMALQQYLHACKYVSLNRIYMTQSSNN GHKESFQEVTTRQGKSRAEEFAPLATTFRRRLLVGVGSASLVAVGANFGGLTSFLLGL APEGGRNLKLDVLYPIEGYSRRIENNEGFEFIYPASWVGDQRLLYRAAERLERSLDPL PTSSLKSSNRPRKNVNEPIVAYGPPGSSGELNVSVIVSPVPLDFSIETFGGPKEVGEA VVRTITGQRPDVKGTLIESSVREDPSKNVKYYELEFRVESPSFQRHNVAVCCARGGRL FTLNAQVAESAWPEFKSVFYRIANSFSLTT" gene complement(39362020..39369952) /locus_tag="TCM_026634" /note="dbxref CacaoGD:Thecc1EG026634" mRNA complement(join(39362020..39362249,39362479..39363184, 39363486..39363556,39363653..39363760,39364261..39364350, 39364810..39364882,39364975..39365400,39365881..39366210, 39366325..39367003,39367180..39367234,39367330..39367462, 39367571..39367670,39367740..39367876,39368361..39368947, 39369444..39369601)) /locus_tag="TCM_026634" /product="Zinc finger isoform 3" /inference="alignment:exonerate-protein:2:frave:gene22503" /inference="similar to AA sequence:ricco:30128.m008807" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc22t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11739t2; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1000t16_C1" mRNA complement(join(39362058..39362118,39362770..39363184, 39363486..39363556,39363653..39363772,39364265..39364350, 39364810..39364882,39364975..39365400,39365881..39366210, 39366325..39367003,39367180..39367234,39367330..39367462, 39367571..39367670,39367740..39367876,39368361..39368947, 39369444..39369952)) /locus_tag="TCM_026634" /product="Zinc finger isoform 1" /inference="alignment:exonerate-protein:2:frave:gene22503" /inference="similar to AA sequence:ricco:30128.m008807" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11739t2" mRNA complement(join(39362468..39363556,39363653..39363772, 39364265..39364350,39364810..39364882,39364975..39365400, 39365881..39366210,39366325..39367003,39367180..39367234, 39367330..39367462,39367571..39367670,39367740..39367876, 39368361..39368947,39369444..39369724)) /locus_tag="TCM_026634" /product="Zinc finger isoform 2" /inference="alignment:exonerate-protein:2:frave:gene22503" /inference="similar to AA sequence:ricco:30128.m008807" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc23t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11739t2; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1000t16_C1" CDS complement(join(39363085..39363184,39363486..39363556, 39363653..39363772,39364265..39364350,39364810..39364882, 39364975..39365400,39365881..39366210,39366325..39367003, 39367180..39367234,39367330..39367462,39367571..39367670, 39367740..39367876,39368361..39368894)) /locus_tag="TCM_026634" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30128.m008807" /codon_start=1 /product="Zinc finger isoform 1" /protein_id="EOY11467.1" /db_xref="TAIR:AT1G09060.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N4G9" /translation="MDHPRSGSGNGEDNVGIPDDLRCKRSDGKQWRCTAMSMPDKTVC EKHYIQAKRRAANSALRASLKKKRKLGGETEVYADKSDDFDVPLISRKVEDYPPPVSG KKYKEKVSKNQIQYSPETPPMRNFPARNSVKMEDDYQRDGSPFEENWRSYKIRSFSAA DSSRNRSQRSYDDVAMPVGDSEESSEEVFVGKTCHQCRQNDRERVSWCLKCDKRGYCD SCISTWYSNIPLDEIEKACPACRGSCNCKACLRGDNMIKVRIREIPVLDKLQYHYSLL SSVLPVVKKIHQEQCSEVELEKKLHGTAIDLVRAKVNADEQMCCNFCRIPIIDYHRHC PNCSYDLCLCCCQDLRRASSGGVEDVGNETGERTLDKETAMGQVSELKLNFLDKFSGW KANSDGSIPCPPMEYGGCGHHSLNLNRIFKMNWVAKLVKNVEEMVSGCKVYDVESSEK TESNDPRLCQFSDREGSDDNLLYFPSSQDLKAEGIADFRKRWGNGEPVIVKEVCDVSS MSSWDPVSIWRGIQENVDEKIKDESRMVKAIDCLDWSEVDIELGQFIKGYMEGRYHEN GWLEMLKLKDWPSPGASEEFLMYQRPEFISKLPLLEYIHSRLGLLNVAAKLPHYSLQN DVGPKIYISYGTYEELGRGDSVTNLHFKMRDMVYLLVHTCDVNAKGQKTKMEDMQNSN GESEVNESLGDPETRSDEKGLPDLSLDGTDMNDEYESTSAVHEDEKMDDQGAETTMVG EKSVDFEQLNGNRRDVLGKTHAGACWDVFHRQDVPKLIEYLRMHWMDSGKPESAISDT VICPLYDEVVYLNEHHKRKLREEFGVVPWSFEQHLGQAVFVPAGCPFQVRNLQSTVQL GLDFLFPESVGEAVRLAEEIRCLPNDHDGKLQILEVGKISLYAASSAIKEVQKLVLDP KLGTELGFEDPNLTAAVSENLEKVAKRRQITCA" CDS complement(join(39363482..39363556,39363653..39363772, 39364265..39364350,39364810..39364882,39364975..39365400, 39365881..39366210,39366325..39367003,39367180..39367234, 39367330..39367462,39367571..39367670,39367740..39367876, 39368361..39368894)) /locus_tag="TCM_026634" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30128.m008807" /codon_start=1 /product="Zinc finger isoform 2" /protein_id="EOY11468.1" /db_xref="TAIR:AT1G09060.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N4G9" /translation="MDHPRSGSGNGEDNVGIPDDLRCKRSDGKQWRCTAMSMPDKTVC EKHYIQAKRRAANSALRASLKKKRKLGGETEVYADKSDDFDVPLISRKVEDYPPPVSG KKYKEKVSKNQIQYSPETPPMRNFPARNSVKMEDDYQRDGSPFEENWRSYKIRSFSAA DSSRNRSQRSYDDVAMPVGDSEESSEEVFVGKTCHQCRQNDRERVSWCLKCDKRGYCD SCISTWYSNIPLDEIEKACPACRGSCNCKACLRGDNMIKVRIREIPVLDKLQYHYSLL SSVLPVVKKIHQEQCSEVELEKKLHGTAIDLVRAKVNADEQMCCNFCRIPIIDYHRHC PNCSYDLCLCCCQDLRRASSGGVEDVGNETGERTLDKETAMGQVSELKLNFLDKFSGW KANSDGSIPCPPMEYGGCGHHSLNLNRIFKMNWVAKLVKNVEEMVSGCKVYDVESSEK TESNDPRLCQFSDREGSDDNLLYFPSSQDLKAEGIADFRKRWGNGEPVIVKEVCDVSS MSSWDPVSIWRGIQENVDEKIKDESRMVKAIDCLDWSEVDIELGQFIKGYMEGRYHEN GWLEMLKLKDWPSPGASEEFLMYQRPEFISKLPLLEYIHSRLGLLNVAAKLPHYSLQN DVGPKIYISYGTYEELGRGDSVTNLHFKMRDMVYLLVHTCDVNAKGQKTKMEDMQNSN GESEVNESLGDPETRSDEKGLPDLSLDGTDMNDEYESTSAVHEDEKMDDQGAETTMVG EKSVDFEQLNGNRRDVLGKTHAGACWDVFHRQDVPKLIEYLRMHWMDSGKPESAISDT VICPLYDEVVYLNEHHKRKLREEFGVVPWSFEQHLGQAVFVPAGCPFQVRNLQSTVQL GLDFLFPESVGEAVRLAEEIRCLPNDHDGKLQILEVGKISLYAASSAIKEVQKLVLDP K" CDS complement(join(39363750..39363760,39364261..39364350, 39364810..39364882,39364975..39365400,39365881..39366210, 39366325..39367003,39367180..39367234,39367330..39367462, 39367571..39367670,39367740..39367876,39368361..39368894)) /locus_tag="TCM_026634" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30128.m008807" /codon_start=1 /product="Zinc finger isoform 3" /protein_id="EOY11469.1" /db_xref="TAIR:AT1G09060.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N4G9" /translation="MDHPRSGSGNGEDNVGIPDDLRCKRSDGKQWRCTAMSMPDKTVC EKHYIQAKRRAANSALRASLKKKRKLGGETEVYADKSDDFDVPLISRKVEDYPPPVSG KKYKEKVSKNQIQYSPETPPMRNFPARNSVKMEDDYQRDGSPFEENWRSYKIRSFSAA DSSRNRSQRSYDDVAMPVGDSEESSEEVFVGKTCHQCRQNDRERVSWCLKCDKRGYCD SCISTWYSNIPLDEIEKACPACRGSCNCKACLRGDNMIKVRIREIPVLDKLQYHYSLL SSVLPVVKKIHQEQCSEVELEKKLHGTAIDLVRAKVNADEQMCCNFCRIPIIDYHRHC PNCSYDLCLCCCQDLRRASSGGVEDVGNETGERTLDKETAMGQVSELKLNFLDKFSGW KANSDGSIPCPPMEYGGCGHHSLNLNRIFKMNWVAKLVKNVEEMVSGCKVYDVESSEK TESNDPRLCQFSDREGSDDNLLYFPSSQDLKAEGIADFRKRWGNGEPVIVKEVCDVSS MSSWDPVSIWRGIQENVDEKIKDESRMVKAIDCLDWSEVDIELGQFIKGYMEGRYHEN GWLEMLKLKDWPSPGASEEFLMYQRPEFISKLPLLEYIHSRLGLLNVAAKLPHYSLQN DVGPKIYISYGTYEELGRGDSVTNLHFKMRDMVYLLVHTCDVNAKGQKTKMEDMQNSN GESEVNESLGDPETRSDEKGLPDLSLDGTDMNDEYESTSAVHEDEKMDDQGAETTMVG EKSVDFEQLNGNRRDVLGKTHAGACWDVFHRQDVPKLIEYLRMHWMDSGKPESAISDT VICPLYDEVVYLNEHHKRKLREEFGVVPWSFEQHLGQAVFVPAGCPFQVRNLQVVRT" mRNA complement(join(39364176..39364882,39364975..39365400, 39365881..39366210,39366325..39367003,39367180..39367234, 39367330..39367462,39367571..39367670,39367740..39367876, 39368361..39368947,39369444..39369601)) /locus_tag="TCM_026634" /product="Zinc finger isoform 4" /inference="alignment:exonerate-protein:2:frave:gene22503" /inference="similar to AA sequence:ricco:30128.m008807" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc22t12; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11739t2; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1000t16_C1" mRNA complement(join(39364471..39364882,39364975..39365400, 39365881..39366210,39366325..39367003,39367180..39367234, 39367330..39367462,39367571..39367670,39367740..39367876, 39368361..39368947,39369444..39369952)) /locus_tag="TCM_026634" /product="Zinc finger isoform 4" /inference="alignment:exonerate-protein:2:frave:gene22503" /inference="similar to AA sequence:ricco:30128.m008807" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:PASA:2:TSA:puevd3b025767t1a2; alternateUTRof:Thecc1EG026634t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11739t2" CDS complement(join(39364796..39364882,39364975..39365400, 39365881..39366210,39366325..39367003,39367180..39367234, 39367330..39367462,39367571..39367670,39367740..39367876, 39368361..39368894)) /locus_tag="TCM_026634" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30128.m008807" /codon_start=1 /product="Zinc finger isoform 4" /protein_id="EOY11470.1" /db_xref="TAIR:AT1G09060.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N4G9" /translation="MDHPRSGSGNGEDNVGIPDDLRCKRSDGKQWRCTAMSMPDKTVC EKHYIQAKRRAANSALRASLKKKRKLGGETEVYADKSDDFDVPLISRKVEDYPPPVSG KKYKEKVSKNQIQYSPETPPMRNFPARNSVKMEDDYQRDGSPFEENWRSYKIRSFSAA DSSRNRSQRSYDDVAMPVGDSEESSEEVFVGKTCHQCRQNDRERVSWCLKCDKRGYCD SCISTWYSNIPLDEIEKACPACRGSCNCKACLRGDNMIKVRIREIPVLDKLQYHYSLL SSVLPVVKKIHQEQCSEVELEKKLHGTAIDLVRAKVNADEQMCCNFCRIPIIDYHRHC PNCSYDLCLCCCQDLRRASSGGVEDVGNETGERTLDKETAMGQVSELKLNFLDKFSGW KANSDGSIPCPPMEYGGCGHHSLNLNRIFKMNWVAKLVKNVEEMVSGCKVYDVESSEK TESNDPRLCQFSDREGSDDNLLYFPSSQDLKAEGIADFRKRWGNGEPVIVKEVCDVSS MSSWDPVSIWRGIQENVDEKIKDESRMVKAIDCLDWSEVDIELGQFIKGYMEGRYHEN GWLEMLKLKDWPSPGASEEFLMYQRPEFISKLPLLEYIHSRLGLLNVAAKLPHYSLQN DVGPKIYISYGTYEELGRGDSVTNLHFKMRDMVYLLVHTCDVNAKGQKTKMEDMQNSN GESEVNESLGDPETRSDEKGLPDLSLDGTDMNDEYESTSAVHEDEKMDDQGAETTMVG EKSVDFEQLNGNRRDVLGKTHAGACWDVFHRQDVPKLIEYLRMHWMDSGKPESAISDT VICPLYDEVVYLNEHHKRKLREEFGKDN" CDS complement(join(39364796..39364882,39364975..39365400, 39365881..39366210,39366325..39367003,39367180..39367234, 39367330..39367462,39367571..39367670,39367740..39367876, 39368361..39368894)) /locus_tag="TCM_026634" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:30128.m008807" /codon_start=1 /product="Zinc finger isoform 4" /protein_id="EOY11471.1" /db_xref="TAIR:AT1G09060.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N4G9" /translation="MDHPRSGSGNGEDNVGIPDDLRCKRSDGKQWRCTAMSMPDKTVC EKHYIQAKRRAANSALRASLKKKRKLGGETEVYADKSDDFDVPLISRKVEDYPPPVSG KKYKEKVSKNQIQYSPETPPMRNFPARNSVKMEDDYQRDGSPFEENWRSYKIRSFSAA DSSRNRSQRSYDDVAMPVGDSEESSEEVFVGKTCHQCRQNDRERVSWCLKCDKRGYCD SCISTWYSNIPLDEIEKACPACRGSCNCKACLRGDNMIKVRIREIPVLDKLQYHYSLL SSVLPVVKKIHQEQCSEVELEKKLHGTAIDLVRAKVNADEQMCCNFCRIPIIDYHRHC PNCSYDLCLCCCQDLRRASSGGVEDVGNETGERTLDKETAMGQVSELKLNFLDKFSGW KANSDGSIPCPPMEYGGCGHHSLNLNRIFKMNWVAKLVKNVEEMVSGCKVYDVESSEK TESNDPRLCQFSDREGSDDNLLYFPSSQDLKAEGIADFRKRWGNGEPVIVKEVCDVSS MSSWDPVSIWRGIQENVDEKIKDESRMVKAIDCLDWSEVDIELGQFIKGYMEGRYHEN GWLEMLKLKDWPSPGASEEFLMYQRPEFISKLPLLEYIHSRLGLLNVAAKLPHYSLQN DVGPKIYISYGTYEELGRGDSVTNLHFKMRDMVYLLVHTCDVNAKGQKTKMEDMQNSN GESEVNESLGDPETRSDEKGLPDLSLDGTDMNDEYESTSAVHEDEKMDDQGAETTMVG EKSVDFEQLNGNRRDVLGKTHAGACWDVFHRQDVPKLIEYLRMHWMDSGKPESAISDT VICPLYDEVVYLNEHHKRKLREEFGKDN" mobile_element complement(39370084..39370227) /note="source:CACAO_PIF_E119_scaffold_3 4490 4636" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(39370232..39370336) /note="source:CACAO_hAT_E2982_scaffold_7 919 1032" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(39370311..39370321) /note="source:scaffold_3_CACTA_0398 4137 4165" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(39370322..39370943) /note="source:CACAO_hAT_E1967_scaffold_5 155 746" /mobile_element_type="transposon:TIR/hAT" mobile_element 39370900..39371251 /note="source:CACAO_on_SS_E42_scaffold_2 24149 24540" /mobile_element_type="transposon:TIR/Mutator" mobile_element complement(39370944..39371240) /note="source:scaffold_3_CACTA_0398 3294 4136" /mobile_element_type="transposon:TIR/CACTA" gene 39372722..39380045 /locus_tag="TCM_026635" /note="dbxref CacaoGD:Thecc1EG026635" mRNA join(39372722..39372991,39373356..39373426, 39373985..39374048,39374143..39374214,39374536..39374730, 39374825..39374902,39375170..39375280,39375465..39375531, 39375643..39375704,39376163..39376302,39376773..39376899, 39376990..39377104,39377317..39377405,39377954..39378037, 39378109..39378297,39378615..39378770,39378845..39378904, 39379254..39380045) /locus_tag="TCM_026635" /product="Acyl-CoA binding protein 4 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s01950.2" /inference="similar to AA sequence:ricco:30128.m008808" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g04369t00001" CDS join(39372827..39372991,39373356..39373426, 39373985..39374048,39374143..39374214,39374536..39374730, 39374825..39374902,39375170..39375280,39375465..39375531, 39375643..39375704,39376163..39376302,39376773..39376899, 39376990..39377104,39377317..39377405,39377954..39378037, 39378109..39378297,39378615..39378770,39378845..39378904, 39379254..39379439) /locus_tag="TCM_026635" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30128.m008808" /codon_start=1 /product="Acyl-CoA binding protein 4 isoform 1" /protein_id="EOY11472.1" /db_xref="TAIR:AT3G05420.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9MA55" /translation="MATMARASSGLAYPERFYAAASYAGFDGSPSSNNKDISSRFSND VALILYALYQQATVGPCNVPKPSSWSPVEQSKWKSWQQLGNMVSTEAMRLFVKILEEE EPGWYSRASNPVSEPVIDVQMNHNSKVEPIIENGNSFAETKTISAENGSLMETQVKDV VLERLGSVVVYDQWIAPPITGQPPKARYEHGAAVVQDKMYVYGGNHNGRYLCDLHVLD LRSWTWSKIDAKVGPESVELPSPVNMAPCAGHSLIPWENKLLSIAGHTKDPSETIHVK SFDLQTGTWSMLKTYGKAPVSRGGQSVTLVGTTLVIFGGQDAKRTLLNDLYILDLETM TWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHATCFNDLHVLDLQAMEWSRPTQ QGEIPTPRAGHAGVTVGENWFIAGGGDNKSGASETVVLNMFTLVWSVVTSVTGRVPLA SEGLSLVVGSLNGEDILISFGGYNGRYNSEVNVLKPSHKSTLQSKIMEAPVPDSVSAV HNATNPTRDLESEFEVGQEGKIREIVVDNVDSEPMKSKGEETSEHIIATLKVEKEELE SSLNKEKLQSLQLKQELAEAEARNTELYKELQSVRGQLAAEQSRCFKLEVDVAELRQK LQTMETLQKELELLQRQKAASEQAALNAKRQGSGGVWGWLSGSPPQNAADDA" mRNA join(<39372844..39372991,39373356..39373426, 39373985..39374048,39374143..39374214,39374536..39374730, 39374825..39374902,39375170..39375280,39375465..39375531, 39375643..39375704,39376163..39376302,39376773..39376899, 39376990..39377104,39377317..39377405,39377954..39378037, 39378109..39378297,39378604..>39378643) /locus_tag="TCM_026635" /product="Acyl-CoA binding protein 4 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s01950.2" /inference="similar to AA sequence:ricco:30128.m008808" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc300t4_C2; inference alignment:Newbler:10:TSA:cgbaP2_g04369t00001" CDS join(<39372845..39372991,39373356..39373426, 39373985..39374048,39374143..39374214,39374536..39374730, 39374825..39374902,39375170..39375280,39375465..39375531, 39375643..39375704,39376163..39376302,39376773..39376899, 39376990..39377104,39377317..39377405,39377954..39378037, 39378109..39378297,39378604..>39378642) /locus_tag="TCM_026635" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30128.m008808" /codon_start=1 /product="Acyl-CoA binding protein 4 isoform 2" /protein_id="EOY11473.1" /db_xref="TAIR:AT3G05420.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9MA55" /translation="ASSGLAYPERFYAAASYAGFDGSPSSNNKDISSRFSNDVALILY ALYQQATVGPCNVPKPSSWSPVEQSKWKSWQQLGNMVSTEAMRLFVKILEEEEPGWYS RASNPVSEPVIDVQMNHNSKVEPIIENGNSFAETKTISAENGSLMETQVKDVVLERLG SVVVYDQWIAPPITGQPPKARYEHGAAVVQDKMYVYGGNHNGRYLCDLHVLDLRSWTW SKIDAKVGPESVELPSPVNMAPCAGHSLIPWENKLLSIAGHTKDPSETIHVKSFDLQT GTWSMLKTYGKAPVSRGGQSVTLVGTTLVIFGGQDAKRTLLNDLYILDLETMTWDEID AVGVPPSPRSDHAAAVHAERYLLIFGGGSHATCFNDLHVLDLQAMEWSRPTQQGEIPT PRAGHAGVTVGENWFIAGGGDNKSGASETVVLNMFTLVWSVVTSVTGRVPLASEGLSL VVGSLNGEDILISFGGYNGRYNSEVNVLKPSHKSTLQSKIMEAPVPDSVSAVHNATNP TRDLESEFEVGQEGKIREIVVDNVDSEPMSICRNPKVRRPVS" mRNA join(39374185..39374214,39374593..39374730, 39374825..39374902,39375170..39375280,39375465..39375531, 39375643..39375704,39376163..39376302,39376773..39376899, 39376990..39377104,39377317..39377405,39377954..39378037, 39378109..39378297,39378615..39378770,39378845..39378904, 39379254..39379892) /locus_tag="TCM_026635" /product="Acyl-CoA binding protein 4 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s01950.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG043364t1" /inference="similar to AA sequence:ricco:30128.m008808" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc300t3; inference alignment:Newbler:10:TSA:cgbaP2_g04369t00001" CDS join(39374209..39374214,39374593..39374730, 39374825..39374902,39375170..39375280,39375465..39375531, 39375643..39375704,39376163..39376302,39376773..39376899, 39376990..39377104,39377317..39377405,39377954..39378037, 39378109..39378297,39378615..39378770,39378845..39378904, 39379254..39379439) /locus_tag="TCM_026635" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30128.m008808; paralog of Thecc1EG043364t1" /codon_start=1 /product="Acyl-CoA binding protein 4 isoform 3" /protein_id="EOY11474.1" /db_xref="TAIR:AT3G05420.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9MA55" /translation="MNTISAENGSLMETQVKDVVLERLGSVVVYDQWIAPPITGQPPK ARYEHGAAVVQDKMYVYGGNHNGRYLCDLHVLDLRSWTWSKIDAKVGPESVELPSPVN MAPCAGHSLIPWENKLLSIAGHTKDPSETIHVKSFDLQTGTWSMLKTYGKAPVSRGGQ SVTLVGTTLVIFGGQDAKRTLLNDLYILDLETMTWDEIDAVGVPPSPRSDHAAAVHAE RYLLIFGGGSHATCFNDLHVLDLQAMEWSRPTQQGEIPTPRAGHAGVTVGENWFIAGG GDNKSGASETVVLNMFTLVWSVVTSVTGRVPLASEGLSLVVGSLNGEDILISFGGYNG RYNSEVNVLKPSHKSTLQSKIMEAPVPDSVSAVHNATNPTRDLESEFEVGQEGKIREI VVDNVDSEPMKSKGEETSEHIIATLKVEKEELESSLNKEKLQSLQLKQELAEAEARNT ELYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQTMETLQKELELLQRQKAASEQAA LNAKRQGSGGVWGWLSGSPPQNAADDA" gene 39380958..39382165 /locus_tag="TCM_026636" /note="dbxref CacaoGD:Thecc1EG026636" mRNA 39380958..39382165 /locus_tag="TCM_026636" /product="Soybean gene regulated by cold-2, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s01930.1" /inference="similar to AA sequence:Phytozome:GSVIVT01031119001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc8t8" CDS 39381057..39381917 /locus_tag="TCM_026636" /codon_start=1 /product="Soybean gene regulated by cold-2, putative" /protein_id="EOY11475.1" /db_xref="Phytozome:GSVIVT01031119001" /db_xref="TAIR:AT1G09070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O81814" /translation="MEFRPLEINVISGKDLKDVNLFTKMDVYAVVSINGDHRTSQKTP VDKDCGSNPKWNYTMRFTVDEANARQNRLNLVFRLKSERQLGDKDIGVVQVPIKELLD HNNADEKVEQNVSYSVRLPNGKAKGVLDFSYKFGEKFSKPVPQPPVPGAEAMYVDKHG EKPAMAYPPPPVGYPGRSSGHPPPPPAGAYPPPPHGMAGYPYPPPGGAYQPYGYPAPG YGYPGYPPAAQVGYGYPPVQKPQKPKKSGMGAGLGLGLAGGLLGGMLIGDMVGDAYEA GIEDGLDFDF" gene complement(39382811..39387945) /locus_tag="TCM_026637" /note="dbxref CacaoGD:Thecc1EG026637" mRNA complement(join(39382811..39383291,39383473..39383552, 39384148..39384210,39385563..39386107,39386367..39386439, 39386661..39387028,39387696..39387945)) /locus_tag="TCM_026637" /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026529t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.20 coverage" CDS complement(join(39383087..39383291,39383473..39383552, 39384148..39384210,39385563..39386107,39386367..39386439, 39386661..39387002)) /locus_tag="TCM_026637" /note="paralog of Thecc1EG026529t1" /codon_start=1 /product="P-loop containing nucleoside triphosphate hydrolases superfamily protein" /protein_id="EOY11476.1" /translation="MIFGEGIVVDVLTSLMLFCGTISKLVPDYLTERIKLWQERLKNY FFPSIRITFDEFTSGLCHRSDAYIAIEYYLSSKSIARVTRLKAESYKRKTPLLFSSNH YEDIEDEFEGIKPASFDSFAMYPEKKKEIINDLIAFNDSDSDNKRKSKSKVTLSRFLN FVDGIWSACGGERIIVFTTNYVDKRDPALIRRGRMDMHIELSYCILGRFKVLAKNYLN LDSHPLFEKIGNLLEEVNMTPADVYEHLLHGRVGIDPKACLESLIEALETAKEEKIEE EDAKTLETVEEEEIEEEIVEEEEIEEEDAKTFETVEEEEIEEEYFYGDGFAVRVPSEF EGIMEPEDFNGGASLSGDKAKPRTFAARFASTDGSEVLSVVIRPTNQLKITFLEDCVL MFSITARLASRAYLNCCNVRNICSVQICRGKNKSLGYRSISTY" mobile_element complement(39388213..39388327) /note="source:scaffold_3_CACTA_0396 878 983" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(39388608..39388795) /note="source:CACAO_on_SS_E42_scaffold_2 25222 25410" /mobile_element_type="transposon:TIR/Mutator" gene complement(39389350..39392647) /locus_tag="TCM_026638" /note="dbxref CacaoGD:Thecc1EG026638" mRNA complement(join(39389350..39389818,39390181..39390307, 39390584..39390791,39391698..39392647)) /locus_tag="TCM_026638" /product="Transducin/WD40 repeat-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031120001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004587t1" /inference="similar to AA sequence:Phytozome:Glyma20g37960.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09440t00001" CDS complement(join(39389716..39389818,39390181..39390307, 39390584..39390791,39391698..39392417)) /locus_tag="TCM_026638" /note="paralog of Thecc1EG004587t1" /codon_start=1 /product="Transducin/WD40 repeat-like superfamily protein, putative" /protein_id="EOY11477.1" /db_xref="Phytozome:Glyma20g37960.1" /db_xref="TAIR:AT3G62770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q93VB2" /translation="MSSSGETLPQSDPDSSPGPTQALNQNPLTIHHVSFNQDNTCFSA ATDCGFLVFSTEPYGPQFRRDFNAGLSLVSMLFRFQLFALVGSSPSPAAANTNADTKA LLWDDNVSRCVGELSFRSPIRSLRLRRDTIVVALLHKIYVYNLSDFKLLHQLETTSNP KGLCEVSQVTGPMVLVCPGLQKGAVRVENYGSKRSTFINAHSSNITCLALSYDGRVLA TASTKGTLIRVFNALDGTLIQEVRRGADRAEIFSLAFSSTAQWLAVSSDKGTVHVFSL KVDSVVLGNDRSSSASESPLSNQSALSSLSILKGVLPKYFSSEWSVAQFRLPEGTHYI VAFGQQKNTVMIIGMDGSFLRCKFDPVNGGQMTQLEAHNFLKPEETFSKSD" mobile_element complement(39392772..39393026) /note="source:scaffold_7_CACTA_0795 2852 3128" /mobile_element_type="transposon:TIR/CACTA" gene complement(39393199..39400666) /locus_tag="TCM_026639" /note="dbxref CacaoGD:Thecc1EG026639" mRNA complement(join(39393199..39393542,39393653..39393745, 39393895..39394015,39394313..39394455,39394911..39394992, 39395279..39395490,39395712..39395839,39395941..39396120, 39396237..39396332,39396440..39396542,39396629..39397117)) /locus_tag="TCM_026639" /product="Protease Do-like 14, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30128.m008812" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026640t1" /inference="similar to AA sequence:ricco:30128.m008812" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11700t2" mRNA complement(join(39393224..39393542,39394312..39394455, 39394911..39394992,39395279..39395490,39395712..39395839, 39395941..39396120,39396237..39396332,39396440..39396511, 39400589..39400666)) /locus_tag="TCM_026639" /product="Trypsin family protein with PDZ domain isoform 5" /inference="alignment:exonerate- protein:2:ricco:30128.m008812" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026640t1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1246t14; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1246t12; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11700t2" mRNA complement(join(39393224..39393542,39394312..39394455, 39394911..39394992,39395279..39395490,39395712..39395839, 39395941..39396120,39396237..39396332,39396440..39396542, 39396629..39396748)) /locus_tag="TCM_026639" /product="Trypsin family protein with PDZ domain isoform 4" /inference="alignment:exonerate- protein:2:ricco:30128.m008812" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026640t1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1246t7; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11700t2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1246t12" CDS complement(join(39393426..39393542,39394312..39394455, 39394911..39394992,39395279..39395490,39395712..39395839, 39395941..39396120,39396237..39396332,39396440..39396511, 39400589..39400658)) /locus_tag="TCM_026639" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG026640t1" /codon_start=1 /product="Trypsin family protein with PDZ domain isoform 5" /protein_id="EOY11482.1" /db_xref="TAIR:AT5G27660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q3E6S8" /translation="MTQNFCFCIHFVREKASCSCSRTALIRIVAIGTAGSGLLYWNTN PDSETTVKLSIPVPLREHLSFQWRRPFLSSYHWEIGNLPLFSSRVSAAPAGDTTKEAP VAVWDDKKPCCGCLSRDSIANAAAKVGPAVVNLSVPQGIYGITTGRSIGSGTIIDADG TILTCAHVVVEFQGMRSTIKGKVDVTLQDGRTFEGTVVNADLHSDIAIVKIKSKTPLP TAKFGSSSNLRPGDWVIAMGCPLSLQNTITAGIVSCVDRKSSDLGLGGMRREYLQTDC AINAGNSGGPLVNIDGEIVGVNIMKVVAADGLSFAVPVDSVSKIIEHFKNSGIVEIMD DRIGKPLKVVVKRANDEEVMLTVIPEEANPDM" CDS complement(join(39393426..39393542,39393653..39393745, 39393895..39394015,39394313..39394455,39394911..39394992, 39395279..39395490,39395712..39395839,39395941..39396120, 39396237..39396332,39396440..39396542,39396629..39396643)) /locus_tag="TCM_026639" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30128.m008812; paralog of Thecc1EG026640t1" /codon_start=1 /product="Protease Do-like 14, putative isoform 1" /protein_id="EOY11478.1" /db_xref="TAIR:AT5G27660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q3E6S8" /translation="MIRLLRNASVSCSRSSLIRIVAIGTAGSGLLYWNTNPDSETTVK LSIPVPLREHLSFQWRRPFLSSYHWEIGNLPLFSSRVSAAPAGDTTKEAPVAVWDDKK PCCGCLSRDSIANAAAKVGPAVVNLSVPQGIYGITTGRSIGSGTIIDADGTILTCAHV VVEFQGMRSTIKGKVDVTLQDGRTFEGTVVNADLHSDIAIVKIKSKTPLPTAKFGSSS NLRPGDWVIAMGCPLSLQNTITAGIVSCVDRKSSDLGLGGMRREYLQTDCAINAGNSG GPLVNIDGEIVGVNIMKVVAADGLSFAVPVDSVSKIIEHFKNSGRVIRPWLGLKMLDL NEMIIAQLRERDAKFPKIEKGILVPMVTPGSPADLAGFRPSDVVVEFDGKPVESIKEI VEIMDDRIGKPLKVVVKRANDEEVMLTVIPEEANPDM" CDS complement(join(39393426..39393542,39394312..39394455, 39394911..39394992,39395279..39395490,39395712..39395839, 39395941..39396120,39396237..39396332,39396440..39396542, 39396629..39396643)) /locus_tag="TCM_026639" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG026640t1" /codon_start=1 /product="Trypsin family protein with PDZ domain isoform 4" /protein_id="EOY11481.1" /db_xref="TAIR:AT5G27660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q3E6S8" /translation="MIRLLRNASVSCSRSSLIRIVAIGTAGSGLLYWNTNPDSETTVK LSIPVPLREHLSFQWRRPFLSSYHWEIGNLPLFSSRVSAAPAGDTTKEAPVAVWDDKK PCCGCLSRDSIANAAAKVGPAVVNLSVPQGIYGITTGRSIGSGTIIDADGTILTCAHV VVEFQGMRSTIKGKVDVTLQDGRTFEGTVVNADLHSDIAIVKIKSKTPLPTAKFGSSS NLRPGDWVIAMGCPLSLQNTITAGIVSCVDRKSSDLGLGGMRREYLQTDCAINAGNSG GPLVNIDGEIVGVNIMKVVAADGLSFAVPVDSVSKIIEHFKNSGIVEIMDDRIGKPLK VVVKRANDEEVMLTVIPEEANPDM" mRNA complement(join(<39393490..39393542,39393653..39393745, 39393895..39394015,39394313..39394455,39394911..39394992, 39395279..39395490,39395712..39395839,39395941..39396120, 39396237..39396332,39396440..39396511, 39400589..>39400666)) /locus_tag="TCM_026639" /product="Trypsin family protein with PDZ domain isoform 2" /inference="alignment:exonerate- protein:2:ricco:30128.m008812" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026640t1" /inference="similar to AA sequence:ricco:30128.m008812" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1246t12; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1246t12; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11700t2" CDS complement(join(<39393492..39393542,39393653..39393745, 39393895..39394015,39394313..39394455,39394911..39394992, 39395279..39395490,39395712..39395839,39395941..39396120, 39396237..39396332,39396440..39396511, 39400589..>39400664)) /locus_tag="TCM_026639" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30128.m008812; paralog of Thecc1EG026640t1" /codon_start=1 /product="Trypsin family protein with PDZ domain isoform 2" /protein_id="EOY11479.1" /db_xref="TAIR:AT5G27660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q3E6S8" /translation="SQMTQNFCFCIHFVREKASCSCSRTALIRIVAIGTAGSGLLYWN TNPDSETTVKLSIPVPLREHLSFQWRRPFLSSYHWEIGNLPLFSSRVSAAPAGDTTKE APVAVWDDKKPCCGCLSRDSIANAAAKVGPAVVNLSVPQGIYGITTGRSIGSGTIIDA DGTILTCAHVVVEFQGMRSTIKGKVDVTLQDGRTFEGTVVNADLHSDIAIVKIKSKTP LPTAKFGSSSNLRPGDWVIAMGCPLSLQNTITAGIVSCVDRKSSDLGLGGMRREYLQT DCAINAGNSGGPLVNIDGEIVGVNIMKVVAADGLSFAVPVDSVSKIIEHFKNSGRVIR PWLGLKMLDLNEMIIAQLRERDAKFPKIEKGILVPMVTPGSPADLAGFRPSDVVVEFD GKPVESIKEIVEIMDDRIGKPLKVVV" mRNA complement(join(39393622..39393745,39393895..39394455, 39394911..39394992,39395279..39395490,39395712..39395839, 39395941..39396120,39396237..39396332,39396440..39396511, 39400589..39400666)) /locus_tag="TCM_026639" /product="Trypsin family protein with PDZ domain isoform 3" /inference="alignment:exonerate- protein:2:ricco:30128.m008812" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026640t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s01900.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1246t8; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1246t12; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11700t2" CDS complement(join(39394234..39394455,39394911..39394992, 39395279..39395490,39395712..39395839,39395941..39396120, 39396237..39396332,39396440..39396511,39400589..39400658)) /locus_tag="TCM_026639" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG026640t1" /codon_start=1 /product="Trypsin family protein with PDZ domain isoform 3" /protein_id="EOY11480.1" /db_xref="Phytozome:POPTR_0013s01900.1" /db_xref="TAIR:AT5G27660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q3E6S8" /translation="MTQNFCFCIHFVREKASCSCSRTALIRIVAIGTAGSGLLYWNTN PDSETTVKLSIPVPLREHLSFQWRRPFLSSYHWEIGNLPLFSSRVSAAPAGDTTKEAP VAVWDDKKPCCGCLSRDSIANAAAKVGPAVVNLSVPQGIYGITTGRSIGSGTIIDADG TILTCAHVVVEFQGMRSTIKGKVDVTLQDGRTFEGTVVNADLHSDIAIVKIKSKTPLP TAKFGSSSNLRPGDWVIAMGCPLSLQNTITAGIVSCVDRKSSDLGLGGMRREYLQTDC AINAGNSGGPLVNIDGEIVGVNIMKVVAADGLSFAVPVDSVSKIIEHFKNSGYDHLLM QLLGEILPVFVVMGLIDLS" gene complement(39397170..39400827) /locus_tag="TCM_026640" /note="dbxref CacaoGD:Thecc1EG026640" mRNA complement(join(39397170..39397540,39397656..39397748, 39397897..39398017,39398299..39398441,39398896..39398977, 39399242..39399453,39399643..39399770,39399871..39400050, 39400196..39400291,39400517..39400612,39400706..39400827)) /locus_tag="TCM_026640" /product="Protease Do-like 14, putative" /inference="alignment:exonerate-protein:2:frave:gene19085" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026639t1" /inference="similar to AA sequence:ricco:30128.m008812" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11666t1" CDS complement(join(39397388..39397540,39397656..39397748, 39397897..39398017,39398299..39398441,39398896..39398977, 39399242..39399453,39399643..39399770,39399871..39400039)) /locus_tag="TCM_026640" /note="dbxref ricco:30128.m008812; paralog of Thecc1EG026639t1" /codon_start=1 /product="Protease Do-like 14, putative" /protein_id="EOY11483.1" /db_xref="TAIR:AT5G27660.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q3E6S8" /translation="MFSSRVSPAAAGDTKKEAPVAVGDGKKPCCGCLGRDSIANAAAK VDRAVVNLSVSQGIYGISTRRNICSGTIIDADGTILTCAHVVADFQGMRSTINGKVDV TLQDGRKFEGRVVNVDLHSDIAIVKMKSKTPLPTAKLGSSSNLRPGDWVIAMGCPLSL QNTITVGIVSCVDRASSDLGLGGMHREYLQTDCAMNMGNSGGPLVNLDGEIVGVNIMK MAAADGLSFAVPVDSVFKIIEHFKNSWRVFRPWLGLTMVDLNEMNIAQLRERGDQFPQ VEKGILVPMVSLCSPADRAGLRPGDVVVKFDGKPVESMTEIVPIMENKIGKPLKVVVK RANDEEVTLTVIPAEANPYMLEAVTHLYVNFF" gene complement(39401245..39402179) /locus_tag="TCM_026642" /note="dbxref CacaoGD:Thecc1EG026642" mRNA complement(join(39401245..39401664,39401979..39402179)) /locus_tag="TCM_026642" /product="Histone H2A 7" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s01890.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041890t2" /inference="similar to AA sequence:TAIR:AT5G27670.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Newbler:10:TSA:cgbaB_g14731t00001" CDS complement(join(39401431..39401664,39401979..39402173)) /locus_tag="TCM_026642" /note="paralog of Thecc1EG041890t2" /codon_start=1 /product="Histone H2A 7" /protein_id="EOY11484.1" /db_xref="TAIR:AT5G27670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B8T6" /translation="MESTAKPAGGRRGERKKAVSKSVKAGLQFPVGRIARFLKKGRYA QRYGAGAPIYLAAVLEYLAAEVLELAGNAARDNKKNRINPRHLLLAVRNDEELGKLLQ GVTIASGGVLPNINPVLLPKKTSASSESDKVSKPKSPKKA" mobile_element complement(39403062..39403554) /note="source:scaffold_9_CACTA_0946 17766 18236" /mobile_element_type="transposon:TIR/CACTA" gene complement(39403603..39410909) /locus_tag="TCM_026643" /note="dbxref CacaoGD:Thecc1EG026643" mRNA complement(join(39403603..39404923,39405388..39405480, 39405576..39405677,39405839..39405926,39406071..39406154, 39406237..39406336,39406549..39406612,39406830..39406910, 39407287..39407343,39407673..39407899,39408022..39408319, 39408571..39408760,39409222..39409332,39409431..39409650, 39409745..39410909)) /locus_tag="TCM_026643" /product="Lysyl-tRNA synthetase 1, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s02650.1" /inference="similar to AA sequence:Phytozome:GSVIVT01031124001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11717t2" mRNA complement(join(39404020..39404923,39405388..39405480, 39405576..39405677,39405839..39405926,39406071..39406154, 39406237..39406336,39406549..39406612,39406830..39406910, 39407287..39407343,39407673..39407899,39408022..39408319, 39408571..39408676,39409222..39409332,39409431..39409650, 39409745..39410441)) /locus_tag="TCM_026643" /product="Lysyl-tRNA synthetase 1, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s02650.1" /inference="similar to AA sequence:Phytozome:GSVIVT01031124001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1298t6_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11717t2" CDS complement(join(39404582..39404923,39405388..39405480, 39405576..39405677,39405839..39405926,39406071..39406154, 39406237..39406336,39406549..39406612,39406830..39406910, 39407287..39407343,39407673..39407899,39408022..39408319, 39408571..39408676,39409222..39409332,39409431..39409650, 39409745..39410330)) /locus_tag="TCM_026643" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Lysyl-tRNA synthetase 1, putative isoform 2" /protein_id="EOY11486.1" /db_xref="Phytozome:GSVIVT01031124001" /db_xref="TAIR:AT5G27680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I4L4" /translation="MGGNDAPSDQVVQKLIEMGFENSDAIEAVKAVGPSVDDAVEYVL NGCRRNSHSTSTSSQCSSRNGKSKRSMSSLQSKGLMRQSSIWDHFQSTSKPKRSKGYD APDGIVSRSQVSHSPVQEQKGSFPFVNNQLETVPEPFPVCCSEEPDIGSNWEPKVNSL LQKHFGYSSLKSFQKEALAAWLTHQDCLVLAATGSGKSLCFQIPTLLTGKVVVVVSPL ISLMHDQCLRLSKHGVSACFLGSGQPDSSVEQKAMRGMYNIIYVCPETILRLIKPLQR LAESRGITLFAIDEVHCVSKWGHDFRPDYGTATVQVRQDILDSLRMSKETKIVLTSFF RPNLRFSVKHSRTSESSYETDFCQLIDLYARRKMIGEKKQALISQESDSDQSSASDLN DIEESDIDESDNENSSKQNSSISSREKQMSVEYLENEVDVFPCVEYLDVVNGEFSGFP HREEWGSQGSFETIDPPNNPEEWLRLLQESLEQGPTIVYVPTRKETLSIAKYLCKCGV KAAAYNAALPKSHLRQVHKEFHENSLEVVVATMAFGMGIDKLNVRRVMHYGWPQSLEA YYQEAGRAGRDGKLADCILYVNLSRVPTLLPSKRSKDQTKQAYKMLSDCFRYGMNTSC CRAKTLVEYFGEDFSNEKCLLCDVCVNGPPNKQDLKEEANILMQIIAARYAENSFMDC SYDNIEQQKFLEKPNFRTFVNKIREQSQKFIATDLLWWKGLARIMEAKGYIREGDDKI HVQIKFPEPTKRGLEFLHYESAEAFHVYPEADMLLSMRKPRVYSSFSDWGKGWADPEI RRQRLEKIRSSNRKPGKPGKPRMRKWRKHSSDLSTSRGRISAKLSKLKCSRLVD" CDS complement(join(39404582..39404923,39405388..39405480, 39405576..39405677,39405839..39405926,39406071..39406154, 39406237..39406336,39406549..39406612,39406830..39406910, 39407287..39407343,39407673..39407899,39408022..39408319, 39408571..39408760,39409222..39409332,39409431..39409650, 39409745..39410330)) /locus_tag="TCM_026643" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Lysyl-tRNA synthetase 1, putative isoform 1" /protein_id="EOY11485.1" /db_xref="Phytozome:GSVIVT01031124001" /db_xref="TAIR:AT5G27680.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I4L4" /translation="MGGNDAPSDQVVQKLIEMGFENSDAIEAVKAVGPSVDDAVEYVL NGCRRNSHSTSTSSQCSSRNGKSKRSMSSLQSKGLMRQSSIWDHFQSTSKPKRSKGYD APDGIVSRSQVSHSPVQEQKGSFPFVNNQLETVPEPFPVCCSEEPDIGSNWEPKVNSL LQKHFGYSSLKSFQKEALAAWLTHQDCLVLAATGSGKSLCFQIPTLLTGKVVVVVSPL ISLMHDQCLRLSKHGVSACFLGSGQPDSSVEQKAMRGMYNIIYVCPETILRLIKPLQR LAESRGITLFAIDEVHCVSKWGHDFRPDYGRLSILRESFSATNLKFLKFDIPIMALTA TATVQVRQDILDSLRMSKETKIVLTSFFRPNLRFSVKHSRTSESSYETDFCQLIDLYA RRKMIGEKKQALISQESDSDQSSASDLNDIEESDIDESDNENSSKQNSSISSREKQMS VEYLENEVDVFPCVEYLDVVNGEFSGFPHREEWGSQGSFETIDPPNNPEEWLRLLQES LEQGPTIVYVPTRKETLSIAKYLCKCGVKAAAYNAALPKSHLRQVHKEFHENSLEVVV ATMAFGMGIDKLNVRRVMHYGWPQSLEAYYQEAGRAGRDGKLADCILYVNLSRVPTLL PSKRSKDQTKQAYKMLSDCFRYGMNTSCCRAKTLVEYFGEDFSNEKCLLCDVCVNGPP NKQDLKEEANILMQIIAARYAENSFMDCSYDNIEQQKFLEKPNFRTFVNKIREQSQKF IATDLLWWKGLARIMEAKGYIREGDDKIHVQIKFPEPTKRGLEFLHYESAEAFHVYPE ADMLLSMRKPRVYSSFSDWGKGWADPEIRRQRLEKIRSSNRKPGKPGKPRMRKWRKHS SDLSTSRGRISAKLSKLKCSRLVD" mobile_element complement(39405046..39405280) /note="source:scaffold_9_CACTA_0946 4303 4507" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(39411162..39411357) /note="source:scaffold_7_CACTA_0779 12485 12698" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(39411358..39411392) /note="source:INTACT383F_F354_scaffold_3-int 2369 2579" /mobile_element_type="retrotransposon:LTR/Unclassified" gene complement(39412701..39415569) /locus_tag="TCM_026644" /note="dbxref CacaoGD:Thecc1EG026644" mRNA complement(join(39412701..39413426,39413504..39413586, 39413680..39413834,39413932..39414654,39414754..39414965, 39415069..39415333,39415433..39415569)) /locus_tag="TCM_026644" /product="Heat shock protein 70 (Hsp 70) family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s01870.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG016516t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s01870.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1302t2" CDS complement(join(39412934..39413426,39413504..39413586, 39413680..39413834,39413932..39414654,39414754..39414965, 39415069..39415333,39415433..39415481)) /locus_tag="TCM_026644" /note="paralog of Thecc1EG016516t1" /codon_start=1 /product="Heat shock protein 70 (Hsp 70) family protein" /protein_id="EOY11487.1" /db_xref="Phytozome:POPTR_0013s01870.1" /db_xref="TAIR:AT5G42020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P11021" /translation="MAIKNKAFWVLFLFISEFFLGIAVAADETKVGTVIGIDLGTTYS CVGVYKNGHVEIIANDQGNRITPSWVAFTDTERLIGEAAKNQAALNAERTIFDVKRLI GRKFDDPEVQRDIKFLPYKVVNKDGKPYIQIKVKGETKVFSPEEISAMVLTKMKETAE AYLGKKIKDAVITVPAYFNDAQRQATKDAGTIAGLNVARIINEPTAAAIAYGLDKKGG EKNILVYDLGGGTFDVSILTIDNGVFEVLATSGDTHLGGEDFDHRVMDYFIKLIKKKY NKDISKDNKALGKLRRECERAKRALSSQHQVRVEIESLFDGVDFSEPLTRARFEELNM DLFKKTLGPVKRALEDANLKKSDISEIVLVGGSTRIPKVQQLLKDLFDGKEPSKGINP DEAVAYGAAVQGGILSGEGGEETKDILLLDVAPLSLGIETVGGVMTKLIPRNTVIPTK KSQVFTTYQDQQTTVSIKVYEGERSLTKDCRELGRFDLTGIPPAPRGVPQIEVTFEVD ANGILHVTAEDKAAKKSQSITITNDKGRLSQEEIEKMVKEAEEFAEEDRKVREKIDSR NKLETYIYNMRSTIDDKDKLADKLGSDDKERIESTLKEALEWLDDNQNGGKEDFDEKL KEVEAVCNPIIKQVYEKSSGSSAGSEEEDEPTDEL" gene complement(39416015..39420307) /locus_tag="TCM_026645" /note="dbxref CacaoGD:Thecc1EG026645" mRNA complement(join(39416015..39417338,39417434..39417669, 39417778..39417968,39418050..39420307)) /locus_tag="TCM_026645" /product="Actin-binding FH2 family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s02640.1" /inference="similar to AA sequence:Phytozome:POPTR_0005s02640.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11729t2" CDS complement(join(39416607..39417338,39417434..39417669, 39417778..39417968,39418050..39419722)) /locus_tag="TCM_026645" /codon_start=1 /product="Actin-binding FH2 family protein" /protein_id="EOY11488.1" /db_xref="Phytozome:POPTR_0005s02640.1" /db_xref="TAIR:AT3G05470.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RFA2" /translation="MGYCSQILYMIFIIFLLISLDSSHILSADALLDAAEGFTVHGLQ QFYFMGESGGNQNKIEKVSGQDENEQKEALIVQKFRALLGLKSTKGRIPLNGAAECFS PSPSPSPNSIEAETSVPAPAPALPMHAHFHSPTPRSSTMPLPKRIHKENTDKGRVRRI LVPVLVSAGAAFLACLVGLICFCGKIRKHRKKSTKPILTYSRKGRIRGKSQYTSSQNS SSNVSLNPSLDLFCLHTLGVDLERQPACLKQSAETGKTSTIDKRKESNKEVALPESDN ASSSSTREITSVHEDVESARYDSDGGHCSPPDKVIPIECHSSDDESFHSFADSRSSNV RLSNVSAGSLSDTSENALNVTKVSPSPQHSFASPSMSPAMSGRHESPDCQKNFTAPPP PPPPPPPPPPPLPPVVLISPLNSSLSATKARLKASSSSTLLDVTPARNSNSSSGSNQN QANPSDIPLSPEKPSKPLPSSTGIPPPPCPPPFLKGNNNPVKGPPPFLKGNNNPVKGP PPPPTQLPQYTPLGKDGAPLPKLKPLHWDKVRAAPDRSMVWDKLRSSSFELDEEMMES LFGYNIHNSMKNDETKSKTPSPSQHVLEPKRLQNITILLKALNVTVEQACNALMKGNG LVLQQLEALVKMVPTKEEETKLSSYKGDINELGSAEKFVKVLLSIPFAFLRAEAMLYR ETFEDEVIHLKNSFSMLQEACKELRSSRLFLKLLEAVLKTGNRMNVGTIRGGAIAFKL DALLKLADVKGTDGKTTLLHFVVQEIIRSEGIRVSDSIMGKINQGNRSRTAEEKEEDY RRMGLDLVSGLSTELYHVKKTATLDLDVLASSVSNLSDGKAKLQHLVQEELSTDEESG NFVRSMNSFLNYAEKNLKELQEDEHRVLLQVREITEYFHGDVSKLDEANPLRIFVIVR DFLGMLDHVCKELRSLKVPSCPSPLAPFR" mobile_element complement(39423755..39423853) /note="source:scaffold_10_CACTA_0137 6927 7006" /mobile_element_type="transposon:TIR/CACTA" gene 39425001..39431033 /locus_tag="TCM_026646" /note="dbxref CacaoGD:Thecc1EG026646" mRNA join(39425001..39425216,39425592..39426164, 39426271..39426430,39427075..39427123,39427227..39427340, 39427476..39427904,39428030..39428416,39428516..39428611, 39428719..39428834,39428933..39429035,39429116..39429189, 39429282..39429793,39430162..39431033) /locus_tag="TCM_026646" /product="Respiratory burst oxidase B" /inference="alignment:exonerate- protein:2:ricco:30128.m008818.3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG034030t1" /inference="similar to AA sequence:ricco:30128.m008818" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc2206t1" CDS join(39425645..39426164,39426271..39426430, 39427075..39427123,39427227..39427340,39427476..39427904, 39428030..39428416,39428516..39428611,39428719..39428834, 39428933..39429035,39429116..39429189,39429282..39429793, 39430162..39430271) /locus_tag="TCM_026646" /note="dbxref ricco:30128.m008818; paralog of Thecc1EG034030t1" /codon_start=1 /product="Respiratory burst oxidase B" /protein_id="EOY11489.1" /db_xref="TAIR:AT1G09090.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FIJ0" /translation="MEIRHSKHESWSDTESTSSNRVGYSGPLSGPILMNNKKSSSKKS ARFKDGDDEYVEITLDIREDSVSVQNIKGGDPETAMLATRLEKRPSFGSQLSFRIRQV SQELKRMTSTKAAAPFNKVDRSKSGAARALQGLKFMTTKNVGSEGWSEVEKRFDELSV DGSLLKSLFGQCIGMNESKEFASELFEALARRRGITSSAISKAELREFWEQISDHGFD ARLQTFFDMVDKDADGRITEEEVKEIIALSASANKLSKIQESAEEYAALIMEELDKDN LGYIEIYNLETLLLQAPSQSTNLVTDSRILSRLLSEKLVPTKERNPIKRWGRGLAYFL EDNWKRIWVLALWISICAGLFTWKFIQYKHRAVFDVMGYCVTTAKGAAETTKFNMALI LLPVCRNTITWLRSRTKLGVVVPFDDNINFHKVVALGIAIGVGLHAGAHLTCDFPRLL HATDEEYEPMKPFFGEKRPNNYWWFVKGTEGWTGVAMVVLMAIAYILAQPWFRRNRLN LPKPIKKLTGFNAFWYSHHLFVIVYALFIVHGYFLYLSKKWYKKTTWMYLAVPMLLYA CERLIRAFRSGYKSVKILKVAVYPGNVLSLHMSKPQGFKYTSGQYIFVNCAAVSPFQW HPFSITSSPADDYLSIHIRTLGDWTSQLKALFVKVCQPPSVNQSGLLRADIGKGENKP RLPKLLIDGPYGAPAQDYKKYDVLLLVGLGIGATPLISIVKDVLNNIKQQKEMEEGIE NGVKNNKRKPFATKRAYFYWVTREQGSFEWFRGVMNEVAEYDRDRMIELHNYCTSVFE EGDARSALITMLQSLHHAKSGVDIVSGTRVKTHFARPNWHKVFKHVAVNHANQRVGVF YCGAPGLTGELRRLAQDFSRKTSTKFDFHKENF" gene 39431594..39433998 /locus_tag="TCM_026647" /note="dbxref CacaoGD:Thecc1EG026647" mRNA join(39431594..39431709,39431806..39431881, 39432337..39433998) /locus_tag="TCM_026647" /product="Heavy metal transport/detoxification superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30128.m008819" /inference="similar to AA sequence:ricco:30128.m008819" /note="quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11737t2" CDS join(39431611..39431709,39431806..39431881, 39432337..39433313) /locus_tag="TCM_026647" /note="dbxref ricco:30128.m008819" /codon_start=1 /product="Heavy metal transport/detoxification superfamily protein, putative" /protein_id="EOY11490.1" /translation="MATSEGKADTKQEAKATESKEAEENQEPPLKYKAWVLKVSIHCE ACKRKVEKTLRKIDGVYEAIADLKQQKATVKANLHVDVETLIKKLIKKGRHAELWPEK AGQKEKKQGKSKNKDKQSGQANGDQEGNSNRGGDKEKEAVKAESTVQQDTAKSCENGS TAKNAEGCNNVSKAHEGGSAPCKTGGQVKESKPDQVKQTVILAAGNQSPVAERKGGGG GGDSEGNAGEKSGGGGGGSSGSKKNKKKGQKGNANANANLDEGEHSGDAGPAFIGSRL PVYGPHGPVPMPSPASYSPPRHHQMYEYPTYSHAPPVYVTSYNTAYPSSSYSAAYYAS SPYSYAYMHPGPMSERPPSDQGIYPYYSSQPSDSFEMFSDENPNACSIM" gene complement(39436036..39439406) /locus_tag="TCM_026648" /note="dbxref CacaoGD:Thecc1EG026648" mRNA complement(join(39436036..39436427,39437256..39437558, 39438538..39438670,39438760..39438858,39439168..39439406)) /locus_tag="TCM_026648" /product="40S ribosomal protein S21-2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma15g15800.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033475t1" /inference="similar to AA sequence:Phytozome:GSVIVT01031151001" /note="quality class is medium, express is medium, homology is paralog strong, intron is weak, protein is utrpoor_complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01710t00001_C2" CDS complement(join(39437499..39437558,39438538..39438670, 39438760..39438809)) /locus_tag="TCM_026648" /note="paralog of Thecc1EG033475t1" /codon_start=1 /product="40S ribosomal protein S21-2" /protein_id="EOY11491.1" /db_xref="Phytozome:GSVIVT01031151001" /db_xref="TAIR:AT5G27700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q3E902" /translation="MQNEEGQNMDLYIPRKCSATNRLITSKDHASVQINIGHLDELGR YAGSYSSFALCGFVRAQGDADSALDRLWQKKKVEVR" gene 39440704..39444939 /locus_tag="TCM_026649" /note="dbxref CacaoGD:Thecc1EG026649" mRNA join(39440704..39441194,39441665..39441784, 39441872..39441980,39442397..39442648,39442719..39442831, 39442980..39443044,39443526..39443776,39443846..39444002, 39444400..39444443,39444536..39444751,39444839..39444939) /locus_tag="TCM_026649" /product="Cell cycle checkpoint control protein family isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031150001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033476t1" /inference="similar to AA sequence:ricco:30128.m008821" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11749t6" mRNA join(39440704..39441194,39441665..39441784, 39441872..39441980,39442397..39442648,39442719..39442831, 39443002..39443044,39443558..39443776,39443846..39444002, 39444400..39444443,39444536..39444939) /locus_tag="TCM_026649" /product="Cell cycle checkpoint control protein family isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031150001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033476t1" /inference="similar to AA sequence:Phytozome:GSVIVT01031150001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:PASA:2:TSA:puevd3b025781t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11749t6" mRNA join(39440704..39441194,39441665..39441784, 39441892..39441980,39442397..39442648,39442719..39442831, 39442980..39443044,39443526..39443776,39443846..39444002, 39444400..39444443,39444536..39444939) /locus_tag="TCM_026649" /product="Cell cycle checkpoint control protein family isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031150001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033476t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s01820.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:PASA:2:TSA:puevd3b025781t1a4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11749t6" mRNA join(39440966..39441194,39441665..39441784, 39441872..39441980,39442397..39442648,39442719..39442831, 39443002..39443044,39443558..39443776,39443846..39444002, 39444403..39444443,39444536..39444894) /locus_tag="TCM_026649" /product="Cell cycle checkpoint control protein family isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031150001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033476t1" /inference="similar to AA sequence:Phytozome:GSVIVT01031150001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11749t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11749t6; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc734t7" mRNA join(39440966..39441194,39441665..39441784, 39441872..39441980,39442397..39442648,39442719..39442831, 39442980..39443044,39443526..39443776,39443846..39444002, 39444046..39444443,39444536..39444610) /locus_tag="TCM_026649" /product="Cell cycle checkpoint control protein family isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031150001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG033476t1" /inference="similar to AA sequence:ricco:30128.m008821" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc734t7; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc734t7; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11749t6" CDS join(39441090..39441194,39441665..39441784, 39441872..39441980,39442397..39442648,39442719..39442831, 39442980..39443044,39443526..39443776,39443846..39444002, 39444400..39444443,39444536..39444687) /locus_tag="TCM_026649" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30128.m008821; paralog of Thecc1EG033476t1" /codon_start=1 /product="Cell cycle checkpoint control protein family isoform 1" /protein_id="EOY11492.1" /db_xref="TAIR:AT3G05480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A2Q329" /translation="MELSLSGNALRTFSRSITCLARVGNELVIQASPSQLALHTLNSS RSAYQSITFKPNFFDVYGISGTQVQCSVLLKAVCSVLRTPMSSIDHLTLKLADPDASK VQWALECYSGMKKAYWITCNVEPDIQHLSLDRRRFPSNLVVRPRDLNRLLANFQSSLQ EITIIATEPMSLPSDAASEIGGKAVELRSYIDPTKDNDSSLHTQLWIDPMEECVQYTH TGDPVDVTFSVKELKAFLTFCEGCEVDIHLFFDKAGEPILMAPKFGLDDGSGSNFDAA LVLATMLISQLHEGNPSEPVQAAVTVHDQAMHGTGSQAQQERSRANVSEHPSDHTRIW SDLSGSAAKSGSGVEERQVQKQQNLNASEQRDIQRISMMNITKDAPIRESVPAAPNLS HHQVERDHVAGVQDTNQINGHALSQRHPSNWVDADEDDDDDDDGDENENELCVQSTPP YYEEQ" CDS join(39441090..39441194,39441665..39441784, 39441872..39441980,39442397..39442648,39442719..39442831, 39443002..39443044,39443558..39443776,39443846..39444002, 39444400..39444443,39444536..39444687) /locus_tag="TCM_026649" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG033476t1" /codon_start=1 /product="Cell cycle checkpoint control protein family isoform 4" /protein_id="EOY11495.1" /db_xref="Phytozome:GSVIVT01031150001" /db_xref="TAIR:AT3G05480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A2Q329" /translation="MELSLSGNALRTFSRSITCLARVGNELVIQASPSQLALHTLNSS RSAYQSITFKPNFFDVYGISGTQVQCSVLLKAVCSVLRTPMSSIDHLTLKLADPDASK VQWALECYSGMKKAYWITCNVEPDIQHLSLDRRRFPSNLVVRPRDLNRLLANFQSSLQ EITIIATEPMSLPSDAASEIGGKAVELRSYIDPTKDNDSSLHTQLWIDPMEECVQYTH TGDPVDVTFSVKELKAARLTFTCFLTKRENDGSGSNFDAALVLATMLISQLHEGNPSE PVQAAVTVHDQAMHGTGSQAQQERSRANVSEHPSDHTRIWSDLSGSAAKSGSGVEERQ VQKQQNLNASEQRDIQRISMMNITKDAPIRESVPAAPNLSHHQVERDHVAGVQDTNQI NGHALSQRHPSNWVDADEDDDDDDDGDENENELCVQSTPPYYEEQ" CDS join(39441090..39441194,39441665..39441784, 39441872..39441980,39442397..39442648,39442719..39442831, 39443002..39443044,39443558..39443776,39443846..39444002, 39444403..39444443,39444536..39444687) /locus_tag="TCM_026649" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG033476t1" /codon_start=1 /product="Cell cycle checkpoint control protein family isoform 5" /protein_id="EOY11496.1" /db_xref="Phytozome:GSVIVT01031150001" /db_xref="TAIR:AT3G05480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A2Q329" /translation="MELSLSGNALRTFSRSITCLARVGNELVIQASPSQLALHTLNSS RSAYQSITFKPNFFDVYGISGTQVQCSVLLKAVCSVLRTPMSSIDHLTLKLADPDASK VQWALECYSGMKKAYWITCNVEPDIQHLSLDRRRFPSNLVVRPRDLNRLLANFQSSLQ EITIIATEPMSLPSDAASEIGGKAVELRSYIDPTKDNDSSLHTQLWIDPMEECVQYTH TGDPVDVTFSVKELKAARLTFTCFLTKRENDGSGSNFDAALVLATMLISQLHEGNPSE PVQAAVTVHDQAMHGTGSQAQQERSRANVSEHPSDHTRIWSDLSGSAAKSGSGVEERQ VQKQQNLNASEQRDIQRISMMNITKDAPIRESVPAAPNLHHQVERDHVAGVQDTNQIN GHALSQRHPSNWVDADEDDDDDDDGDENENELCVQSTPPYYEEQ" CDS join(39441090..39441194,39441665..39441784, 39441872..39441980,39442397..39442648,39442719..39442831, 39442980..39443044,39443526..39443776,39443846..39444002, 39444046..39444172) /locus_tag="TCM_026649" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30128.m008821; paralog of Thecc1EG033476t1" /codon_start=1 /product="Cell cycle checkpoint control protein family isoform 2" /protein_id="EOY11493.1" /db_xref="TAIR:AT3G05480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A2Q329" /translation="MELSLSGNALRTFSRSITCLARVGNELVIQASPSQLALHTLNSS RSAYQSITFKPNFFDVYGISGTQVQCSVLLKAVCSVLRTPMSSIDHLTLKLADPDASK VQWALECYSGMKKAYWITCNVEPDIQHLSLDRRRFPSNLVVRPRDLNRLLANFQSSLQ EITIIATEPMSLPSDAASEIGGKAVELRSYIDPTKDNDSSLHTQLWIDPMEECVQYTH TGDPVDVTFSVKELKAFLTFCEGCEVDIHLFFDKAGEPILMAPKFGLDDGSGSNFDAA LVLATMLISQLHEGNPSEPVQAAVTVHDQAMHGTGSQAQQERSRANVSEHPSDHTRIW SDLSGSAAKSGSGVEERQVQKQQNLNASEQRDIQRISMMNITKDAPIRESVPAAPNLH HVLSLLLVISCYSFLLPLHVCSCPCLQDSCIFTYASEQRV" CDS join(39441899..39441980,39442397..39442648, 39442719..39442831,39442980..39443044,39443526..39443776, 39443846..39444002,39444400..39444443,39444536..39444687) /locus_tag="TCM_026649" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG033476t1" /codon_start=1 /product="Cell cycle checkpoint control protein family isoform 3" /protein_id="EOY11494.1" /db_xref="Phytozome:POPTR_0013s01820.1" /db_xref="TAIR:AT3G05480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A2Q329" /translation="MSSIDHLTLKLADPDASKVQWALECYSGMKKAYWITCNVEPDIQ HLSLDRRRFPSNLVVRPRDLNRLLANFQSSLQEITIIATEPMSLPSDAASEIGGKAVE LRSYIDPTKDNDSSLHTQLWIDPMEECVQYTHTGDPVDVTFSVKELKAFLTFCEGCEV DIHLFFDKAGEPILMAPKFGLDDGSGSNFDAALVLATMLISQLHEGNPSEPVQAAVTV HDQAMHGTGSQAQQERSRANVSEHPSDHTRIWSDLSGSAAKSGSGVEERQVQKQQNLN ASEQRDIQRISMMNITKDAPIRESVPAAPNLSHHQVERDHVAGVQDTNQINGHALSQR HPSNWVDADEDDDDDDDGDENENELCVQSTPPYYEEQ" mobile_element 39446643..39446760 /note="source:CACAO_Helitron_E81_scaffold_3 1818 1931" /mobile_element_type="transposon:Helitron" mobile_element complement(39448341..39448409) /note="source:CACAO_PIF_E465_scaffold_115 267 338" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(39449420..39449527) /note="source:scaffold_4_CACTA_0483 2559 2667" /mobile_element_type="transposon:TIR/CACTA" gene 39449674..39450288 /locus_tag="TCM_026650" /note="dbxref CacaoGD:Thecc1EG026650" mRNA 39449674..39450288 /locus_tag="TCM_026650" /product="Rapid alkalinization factor 1, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g29260.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004618t1" /inference="similar to AA sequence:Phytozome:GSVIVT01017757001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc477t5" CDS 39449861..39450217 /locus_tag="TCM_026650" /note="paralog of Thecc1EG004618t1" /codon_start=1 /product="Rapid alkalinization factor 1, putative" /protein_id="EOY11497.1" /db_xref="Phytozome:GSVIVT01017757001" /db_xref="TAIR:AT4G15800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I9T7" /translation="MAVNCKLLVICAMIITAVVAATTRTVDASGEHERILGWIPTGSP CKGSIAECLAGEEFQLDSEISRRILATAQYISYGALQRNTVPCSRRGASYYNCQPGAQ ANPYSRGCNRITRCRS" gene 39453773..39455117 /locus_tag="TCM_026651" /note="dbxref CacaoGD:Thecc1EG026651" mRNA join(39453773..39453969,39454092..39454316, 39454411..39455105) /locus_tag="TCM_026651" /product="Rubber elongation factor isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s02580.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004625t1" /inference="similar to AA sequence:ricco:30128.m008823" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.65 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11965t3" CDS join(39453934..39453969,39454092..39454316, 39454411..39454878) /locus_tag="TCM_026651" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30128.m008823; paralog of Thecc1EG004625t1" /codon_start=1 /product="Rubber elongation factor isoform 1" /protein_id="EOY11498.1" /db_xref="TAIR:AT3G05500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C9E7B4" /translation="MAQGDSNFQQDMAKEEEQSLKYLEFVQVSAVYAVLCFTNLYVYA KERSGPLKPGVETVEGTVKSVVRPVYDKYHDVPVELLKFVDRKVGESVTSIDRRVRPV IKQVSSEAFSVAQKAPGVARGVASEVQRAGVVSTASGYAKSVYTKYEPAAKGLYAKYE PKAEQCAVSAWRKLNRLPLFPQVASVVVPTAAFCTDKYNQTVVSSAEKGYKVASYLPL VPTEKIAEVFNEEKPESEPLVSHS" mRNA join(39454052..39454316,39454411..39455117) /locus_tag="TCM_026651" /product="Rubber elongation factor isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s02580.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004625t1" /inference="similar to AA sequence:ricco:30128.m008823" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:PASA:2:TSA:puevd3b025783t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11965t3" CDS join(39454077..39454316,39454411..39454878) /locus_tag="TCM_026651" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30128.m008823; paralog of Thecc1EG004625t1" /codon_start=1 /product="Rubber elongation factor isoform 2" /protein_id="EOY11499.1" /db_xref="TAIR:AT3G05500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C9E7B4" /translation="MENLKAKEEEQSLKYLEFVQVSAVYAVLCFTNLYVYAKERSGPL KPGVETVEGTVKSVVRPVYDKYHDVPVELLKFVDRKVGESVTSIDRRVRPVIKQVSSE AFSVAQKAPGVARGVASEVQRAGVVSTASGYAKSVYTKYEPAAKGLYAKYEPKAEQCA VSAWRKLNRLPLFPQVASVVVPTAAFCTDKYNQTVVSSAEKGYKVASYLPLVPTEKIA EVFNEEKPESEPLVSHS" gene 39455822..39459024 /locus_tag="TCM_026652" /note="dbxref CacaoGD:Thecc1EG026652" mRNA join(39455822..39456155,39456327..39456428, 39456665..39456787,39457145..39457204,39457393..39457489, 39457593..39457666,39457874..39457927,39458019..39458102, 39458180..39458300,39458643..39459024) /locus_tag="TCM_026652" /product="ATP-dependent caseinolytic (Clp) protease/crotonase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031146001" /inference="similar to AA sequence:TAIR:AT1G09130.3" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07783t00001; inference alignment:Newbler:10:TSA:cgbaB_g07783t00001" mRNA join(39455829..39456155,39456327..39456428, 39456665..39456787,39457145..39457204,39457393..39457489, 39457593..39457666,39457874..39457927,39458019..39458102, 39458180..39458309,39458646..39458786) /locus_tag="TCM_026652" /product="ATP-dependent caseinolytic (Clp) protease/crotonase family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031146001" /inference="similar to AA sequence:TAIR:AT1G09130.3" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc713t10; alternateUTRof:Thecc1EG026652t1; inference alignment:Newbler:10:TSA:cgbaB_g07783t00001" CDS join(39455868..39456155,39456327..39456428, 39456665..39456787,39457145..39457204,39457393..39457489, 39457593..39457666,39457874..39457927,39458019..39458102, 39458180..39458275) /locus_tag="TCM_026652" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="ATP-dependent caseinolytic (Clp) protease/crotonase family protein isoform 1" /protein_id="EOY11500.1" /db_xref="TAIR:AT1G09130.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L770" /translation="MASCLHAPMAYRIPSSASSQSVRRPKALTLSCRAFGAKNAAKIP MPPVNPKDPFLSKLASVAASSPETLLNRPVNPDTPPYLDLFESPKLMATPAQVERSVS YNEHRPRRPPPDLPSLLLHGRIVYIGMPLVPAVTELIVAELMYLQWMDPKQPIYLYIN STGTTRDDGETVGMETEGFAMYDALMNLQNEIHTVAVGAAIGQACLLLSAGTKGKRFM MPHAKAMIQQPRIPSSGLMPASDVLIRAKEVIINRDILVELLAKHTGNSVEMVANVMK RPFYMDATRAKEFGVIDKILWRGQEKVMAEVAAPEEWDKNAGIKVMDGF" CDS join(39455868..39456155,39456327..39456428, 39456665..39456787,39457145..39457204,39457393..39457489, 39457593..39457666,39457874..39457927,39458019..39458102, 39458180..39458275) /locus_tag="TCM_026652" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="ATP-dependent caseinolytic (Clp) protease/crotonase family protein isoform 1" /protein_id="EOY11501.1" /db_xref="TAIR:AT1G09130.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8L770" /translation="MASCLHAPMAYRIPSSASSQSVRRPKALTLSCRAFGAKNAAKIP MPPVNPKDPFLSKLASVAASSPETLLNRPVNPDTPPYLDLFESPKLMATPAQVERSVS YNEHRPRRPPPDLPSLLLHGRIVYIGMPLVPAVTELIVAELMYLQWMDPKQPIYLYIN STGTTRDDGETVGMETEGFAMYDALMNLQNEIHTVAVGAAIGQACLLLSAGTKGKRFM MPHAKAMIQQPRIPSSGLMPASDVLIRAKEVIINRDILVELLAKHTGNSVEMVANVMK RPFYMDATRAKEFGVIDKILWRGQEKVMAEVAAPEEWDKNAGIKVMDGF" mobile_element 39459080..39459186 /note="source:scaffold_1_CACTA_0005 6506 6623" /mobile_element_type="transposon:TIR/CACTA" gene 39459244..39462782 /locus_tag="TCM_026654" /note="dbxref CacaoGD:Thecc1EG026654" mRNA join(39459244..39459803,39459912..39459989, 39460080..39460222,39460670..39460740,39460886..39460981, 39461174..39461266,39461389..39461482,39461580..39462108, 39462752..39462782) /locus_tag="TCM_026654" /product="T-box protein 41" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s01780.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s01780.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02516t00002" CDS join(39459375..39459803,39459912..39459989, 39460080..39460222,39460670..39460740,39460886..39460981, 39461174..39461266,39461389..39461471) /locus_tag="TCM_026654" /codon_start=1 /product="T-box protein 41" /protein_id="EOY11502.1" /db_xref="Phytozome:POPTR_0013s01780.1" /db_xref="TAIR:AT5G27710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NM16" /translation="MGNTSLSLRFTIFLSLSFAASSSSPFFFSKSPSLSPSIPKATPS DLLSLLGPPSQSSSVNPSVADELKSCFKFLVPFTPIDTRKTPDSKSLSYRRTLLKSPR DEENELVWWPPEPVLELARLAVDSGGDPGSIHRALDPTVLPVPDVEGSKENKCGLTRT PYGRRFISQELNSYLEYLFKLIVERGPSVGLKVSLTRYDLFHGHIFIATETGRLGILF HAKEYPAYDKDMFPINMGYCQKGSNVTYDDSMNLRNILWLAPLPSNSTKGWMAPGVLL VLDARPGGIIYRDLIPEYVNYVRTIYEDDLGSVVVDVNYLNIGDPQPDYQIFIC" gene 39463124..39466867 /locus_tag="TCM_026655" /note="dbxref CacaoGD:Thecc1EG026655" mRNA join(39463124..39463888,39463998..39464116, 39464201..39464266,39464412..39464609,39465167..39465285, 39465503..39465608,39466058..39466867) /locus_tag="TCM_026655" /product="Phospholipid/glycerol acyltransferase family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031143001" /inference="similar to AA sequence:Phytozome:GSVIVT01031143001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06988t00001" CDS join(39463660..39463888,39463998..39464116, 39464201..39464266,39464412..39464609,39465167..39465285, 39465503..39465608,39466058..39466630) /locus_tag="TCM_026655" /codon_start=1 /product="Phospholipid/glycerol acyltransferase family protein" /protein_id="EOY11503.1" /db_xref="Phytozome:GSVIVT01031143001" /db_xref="TAIR:AT3G05510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94F16" /translation="MAVQWIDRGDLWKNKARVLQLQLRQRFRVAVDRHRRHRHSMFAD RYVSSTVQRWLRRFRDFRRDSLPSSSAFYRKRVSKDFNVEEDSVILRTLQAVAVPLIG NVCHVFMNGLNRVQVYGLEKLHDALLNRPKNKPLVTVSNHVASVDDPFVIASLLPPRV LLDAQNLRWTLCASDRCFSNPVTSAFFRSVKVLPVSRGDGIYQKGMDMAISKLNSGGW VHIFPEGSRSRDGGKTVRSSKRGVGRLVLDADNTPIVLPFVHTGMQDVMPIGANFPRI GKTVTVLIGDPIHFDDLLNVEEPVDASRGKLYDAVASRIGHHLQNLKVQVDKLVLEQS IQLENHHINGAKRTADILHQVDWDPFGLGSNECMLDESSGQETEVQLKPNAVTSSEEC SPDDHRYFRMGFSFEGGIASRIRSYMDPTELMGFAARGLFMNPRAKENSASIRDIRPL RVWKQFLEANLLVQQWNSC" gene 39467163..39471548 /locus_tag="TCM_026656" /note="dbxref CacaoGD:Thecc1EG026656" mRNA join(39467163..39467663,39467864..39467979, 39468565..39468654,39468855..39468919,39469522..39469683, 39469846..39469924,39470022..39470099,39470471..39470660, 39471032..39471548) /locus_tag="TCM_026656" /product="Subunits of heterodimeric actin filament capping protein Capz superfamily isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031141001" /inference="similar to AA sequence:Phytozome:POPTR_0013s01770.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:PASA:2:TSA:puevd3b025787t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11983t3" mRNA join(39467214..39467663,39467864..39467979, 39468565..39468654,39468855..39468919,39469522..39469683, 39469846..39469924,39470022..39470099,39470471..39470545, 39470625..39470660,39471032..39471515) /locus_tag="TCM_026656" /product="Subunits of heterodimeric actin filament capping protein Capz superfamily isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031141001" /inference="similar to AA sequence:Phytozome:POPTR_0013s01770.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11983t3" CDS join(39467354..39467663,39467864..39467979, 39468565..39468654,39468855..39468919,39469522..39469683, 39469846..39469924,39470022..39470099,39470471..39470545, 39470625..39470660,39471032..39471139) /locus_tag="TCM_026656" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Subunits of heterodimeric actin filament capping protein Capz superfamily isoform 1" /protein_id="EOY11504.1" /db_xref="Phytozome:POPTR_0013s01770.1" /db_xref="TAIR:AT3G05520.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RFB3" /translation="MISIFVFSLFPSLSCFTNQKAFTDHYLLLHISLSLSFSSAFLLF LVPNKSKRFRFFPLKFALQRARKIGMAEEETELSEEQRKEIAKWFLLNAPAGEIQYVA KDLKSVLNDDDVYNEAVSEAFPVYNKSHMICLEMPGRFGDVLVTSYGELQDNEYLDPK TAQVAIVDHVKQVCTEVRPATDEELPSPYIEEYRCALDIEMSKYVGEAYPKGFCSVYC TNGKDVEGPGSDFELVVVISAARLSPQNFCNGSWRSIWNIEFKDDIQILELKGKLQVG AHYFEEGNVQLDARHECKDSTLFQSPDDSAVSIATIIRHHETEYLASLEASYLNLPDT TFKDLRRKLPVTRTLFPWHNTSQFSLTREISKELGIGK" CDS join(39467354..39467663,39467864..39467979, 39468565..39468654,39468855..39468919,39469522..39469683, 39469846..39469924,39470022..39470099,39470471..39470605) /locus_tag="TCM_026656" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Subunits of heterodimeric actin filament capping protein Capz superfamily isoform 3" /protein_id="EOY11506.1" /db_xref="Phytozome:POPTR_0013s01770.1" /db_xref="TAIR:AT3G05520.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RFB3" /translation="MISIFVFSLFPSLSCFTNQKAFTDHYLLLHISLSLSFSSAFLLF LVPNKSKRFRFFPLKFALQRARKIGMAEEETELSEEQRKEIAKWFLLNAPAGEIQYVA KDLKSVLNDDDVYNEAVSEAFPVYNKSHMICLEMPGRFGDVLVTSYGELQDNEYLDPK TAQVAIVDHVKQVCTEVRPATDEELPSPYIEEYRCALDIEMSKYVGEAYPKGFCSVYC TNGKDVEGPGSDFELVVVISAARLSPQNFCNGSWRSIWNIEFKDDIQILELKGKLQVG AHYFEEGNVQLDARHECKDSTLFQSPDDSAVSIATIIRHHETEYLASLEVAFNMSGLF QMLEFSRVLY" mRNA join(<39467393..39467663,39467864..39467979, 39468565..39468654,39468855..39468919,39469522..39469683, 39469846..39469924,39470019..39470099,39470471..39470545, 39470625..39470661,39471032..39471548) /locus_tag="TCM_026656" /product="Subunits of heterodimeric actin filament capping protein Capz superfamily isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031141001" /inference="similar to AA sequence:Phytozome:POPTR_0013s01770.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11983t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11983t3" CDS join(<39467393..39467663,39467864..39467979, 39468565..39468654,39468855..39468919,39469522..39469683, 39469846..39469924,39470019..39470099,39470471..39470545, 39470625..39470661,39471032..39471081) /locus_tag="TCM_026656" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Subunits of heterodimeric actin filament capping protein Capz superfamily isoform 2" /protein_id="EOY11505.1" /db_xref="Phytozome:POPTR_0013s01770.1" /db_xref="TAIR:AT3G05520.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RFB3" /translation="SCFTNQKAFTDHYLLLHISLSLSFSSAFLLFLVPNKSKRFRFFP LKFALQRARKIGMAEEETELSEEQRKEIAKWFLLNAPAGEIQYVAKDLKSVLNDDDVY NEAVSEAFPVYNKSHMICLEMPGRFGDVLVTSYGELQDNEYLDPKTAQVAIVDHVKQV CTEVRPATDEELPSPYIEEYRCALDIEMSKYVGEAYPKGFCSVYCTNGKDVEGPGSDF ELVVVISAARLSPQNFCNGSWRSIWNIEFKDDIQILELKGKLQQVGAHYFEEGNVQLD ARHECKDSTLFQSPDDSAVSIATIIRHHETEYLASLEASYLNLPDTTFKGSSQETSSY SNLIPMA" mRNA join(39467468..39467663,39467864..39467979, 39468565..39468592,39468895..39468919,39469522..39469683, 39469846..39469924,39470022..39470099,39470471..39470545, 39470625..39470660,39471032..39471399) /locus_tag="TCM_026656" /product="F-actin capping protein alpha, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031141001" /inference="similar to AA sequence:Phytozome:POPTR_0013s01770.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02385t00002; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11983t3" CDS join(39467561..39467663,39467864..39467979, 39468565..39468592,39468895..39468919,39469522..39469683, 39469846..39469924,39470022..39470099,39470471..39470545, 39470625..39470660,39471032..39471139) /locus_tag="TCM_026656" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="F-actin capping protein alpha, putative isoform 4" /protein_id="EOY11507.1" /db_xref="Phytozome:POPTR_0013s01770.1" /db_xref="TAIR:AT3G05520.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RFB3" /translation="MAEEETELSEEQRKEIAKWFLLNAPAGEIQYVAKDLKSVLNDDD VYNEAVSEAFPVYNKSHMICLEMPGRFGDVLVTSYGELPSPYIEEYRCALDIEMSKYV GEAYPKGFCSVYCTNGKDVEGPGSDFELVVVISAARLSPQNFCNGSWRSIWNIEFKDD IQILELKGKLQVGAHYFEEGNVQLDARHECKDSTLFQSPDDSAVSIATIIRHHETEYL ASLEASYLNLPDTTFKDLRRKLPVTRTLFPWHNTSQFSLTREISKELGIGK" gene 39474183..39477741 /locus_tag="TCM_026658" /note="dbxref CacaoGD:Thecc1EG026658" mRNA join(39474183..39474359,39474493..39474650, 39474747..39474884,39475019..39475100,39475438..39475514, 39475594..39475709,39475801..39475918,39476061..39476177, 39476289..39476380,39476469..39476535,39476617..39476787, 39476893..39477036,39477112..39477741) /locus_tag="TCM_026658" /product="Heparan-alpha-glucosaminide N-acetyltransferase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s02530.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG022283t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s01760.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01813t00001" CDS join(39474519..39474650,39474747..39474884, 39475019..39475100,39475438..39475514,39475594..39475709, 39475801..39475918,39476061..39476177,39476289..39476380, 39476469..39476535,39476617..39476787,39476893..39477036, 39477112..39477258) /locus_tag="TCM_026658" /note="paralog of Thecc1EG022283t1" /codon_start=1 /product="Heparan-alpha-glucosaminide N-acetyltransferase" /protein_id="EOY11508.1" /db_xref="Phytozome:POPTR_0013s01760.1" /db_xref="TAIR:AT5G27730.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q94CC1" /translation="MAEIKAEPAQRHTLAIPMADDSAQKPNKTQRVASLDIFRGLTVA LMILVDDAGGEWPVIGHAPWHGCNLADFVMPFFLFIVGMAIPLALKRIPGKGKAIQKV GFRTLKLLFWGLLLQGGYSHAPDKLTYGVDMKMIRFCGILQRIAFAYLVVALAEIFLK DAQPKDVSAGHFSVFRLYCWHWLVGACILIMYLALLYGTYVPDWQFTVQNKDSADYGK VFTVACNVRGKLDPPCNAVGYIDREVLGINHMYQRPAWRRSRACTVNSPYEGPFKDAA PSWCHAPFEPEGILSSISAVLSTIIGVHFGHVLVHLKGHSERLRQWIMMGIALLILGI VLHFTAIPLNKQLYTFSYVCVTSGAAALVFSAIYILVDIWDLKLVFLPLKWIGMNAML VYVMAAEGIFAGFINGWYYQDPHNTLVYWIQKHIFIGVWHSRRVGILLYVIFAEILFW AIIAGILHRSGIYWKL" gene 39478072..39482382 /locus_tag="TCM_026659" /note="dbxref CacaoGD:Thecc1EG026659" mRNA join(39478072..39478357,39478746..39478862, 39479093..39479200,39479363..39479554,39479648..39479839, 39480069..39480187,39480300..39480387,39480472..39480591, 39480670..39480810,39481037..39481287,39482040..39482382) /locus_tag="TCM_026659" /product="Regulatory particle triple-A ATPase 5A" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s01750.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG003122t1" /inference="similar to AA sequence:Phytozome:Glyma20g38030.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc161t19" CDS join(39478241..39478357,39478746..39478862, 39479093..39479200,39479363..39479554,39479648..39479839, 39480069..39480187,39480300..39480387,39480472..39480591, 39480670..39480810,39481037..39481114) /locus_tag="TCM_026659" /note="paralog of Thecc1EG003122t1" /codon_start=1 /product="Regulatory particle triple-A ATPase 5A" /protein_id="EOY11509.1" /db_xref="Phytozome:Glyma20g38030.1" /db_xref="TAIR:AT3G05530.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P17980" /translation="MATAMVEDSNVEEDQLMSMTTEDIVRASRLLDNEIRILKEEMQR TNLELDSYKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRK GKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAME VDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGIRPPKGVLLYGPPGTGKT LMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIG TKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDR KIEFPHPSEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLAL RRDATEVNHEDFNEGIIQVQAKKKASLNYYA" gene complement(39482387..39483899) /locus_tag="TCM_026661" /note="dbxref CacaoGD:Thecc1EG026661" mRNA complement(join(39482387..39482738,39482834..39482991, 39483080..39483208,39483332..39483405,39483867..39483899)) /locus_tag="TCM_026661" /product="Translationally-controlled tumor protein" /inference="alignment:exonerate- protein:2:ricco:30128.m008835" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021217t1" /inference="similar to AA sequence:ricco:30128.m008835" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g15259t1" CDS complement(join(39482621..39482738,39482834..39482991, 39483080..39483208,39483332..39483405,39483867..39483894)) /locus_tag="TCM_026661" /note="dbxref ricco:30128.m008835; paralog of Thecc1EG021217t1" /codon_start=1 /product="Translationally-controlled tumor protein" /protein_id="EOY11510.1" /db_xref="TAIR:AT3G16640.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ZSW9" /translation="MLVYQDLLTADELLSDSFSHKEIENGMLWEVEGKWVIQGAVSVD TGANPSAEDGGEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFVTFMKRYIKNLTPKL EPEKQELFKKNIEGATKYLLSKIKDFQFFVGESMHDDGSLVFAYYKEGATDPTFLYFA YGLKEVKC" gene 39486333..39489771 /locus_tag="TCM_026662" /note="dbxref CacaoGD:Thecc1EG026662" mRNA join(39486333..39486948,39487063..39487210, 39487429..39487509,39487601..39488065,39488185..39488505, 39488799..39489771) /locus_tag="TCM_026662" /product="Protease m50 membrane-bound transcription factor site 2 protease, putative" /inference="alignment:exonerate- protein:2:ricco:27837.m000155" /inference="similar to AA sequence:ricco:27837.m000155" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06553t00001" CDS join(39486527..39486948,39487063..39487210, 39487429..39487509,39487601..39488065,39488185..39488505, 39488799..39488960) /locus_tag="TCM_026662" /note="dbxref ricco:27837.m000155" /codon_start=1 /product="Protease m50 membrane-bound transcription factor site 2 protease, putative" /protein_id="EOY11511.1" /db_xref="TAIR:AT4G20310.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4JUU5" /translation="MRVNRARRFGAARLPLRASLPSPSHRVAAASNAVSCWYCDLKIS AFNEPLFRFGRNHAAILKLWFSIGTGFGLTALVGVTLILIWQLFLRSNAQLSNLFSSL LFGFSPSLRISLSDAGYLFVSTLFSVSVHEFGHAVALASEGIQLEYIAVFLAVLFPGA LVAFDHDLLQALPRLTALRVYCAGIWHNAVFCAVCGLLLFLKPVILFPFYIHAESPLV LDVAPASPLSEFLSPGDAIVSLDGVRIHDVQEWVEMTSLLDKKIRQNSSDLHYFKGFG TVDNRKGYCVPNALLEDSKKVQLADSQSICPNDLVAFVRIHCFDPGKLEDVGDEDGHR GRRENELCLNAKDIVKLGKCGEGLGTVMINGSRCICSQDESCLSPVQLPGLMWVEITY SRPYSTECLHLRSSLLDSNTSDAVEQNCGGTFVFVGDVISMAHSVQLTVYQPRWGIFL GEYLPNKLEKSLICTFHVSLTLALLNSLPVYFLDGESILEVTLSHFTSLSPRKMRTVL QICLVGGTFISVLAFLRIFFINFL" gene 39490888..39496903 /locus_tag="TCM_026663" /note="dbxref CacaoGD:Thecc1EG026663" mRNA join(39490888..39491656,39492277..39492446, 39492942..39493000,39493777..39493802,39493907..39494297, 39496102..39496843) /locus_tag="TCM_026663" /product="RING/U-box superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s01710.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004644t1" /inference="similar to AA sequence:Phytozome:Glyma20g38050.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.59 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc82t2_C2" mRNA join(39491085..39491656,39492277..39492446, 39492942..39493000,39493777..39493802,39493907..39494297, 39496102..39496328,39496454..39496903) /locus_tag="TCM_026663" /product="RING/U-box superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s01710.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004644t1" /inference="similar to AA sequence:Phytozome:Glyma20g38050.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc82t10_C2; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc82t2_C2" CDS join(39491467..39491656,39492277..39492446, 39492942..39493000,39493777..39493802,39493907..39494297, 39496102..39496579) /locus_tag="TCM_026663" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG004644t1" /codon_start=1 /product="RING/U-box superfamily protein isoform 1" /protein_id="EOY11512.1" /db_xref="Phytozome:Glyma20g38050.1" /db_xref="TAIR:AT3G05545.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9SAQ0" /translation="MGLGSNGGDDVVVDDGDGGGDGGDCGNGEKSFCSVSCSICLETV ADNGDRSWAKLQCGHQFHLDCIGSAFNIKGAMQCPNCRKIEKGQWLYANGCRSYPEFS VDDWTHDEDLYDLSYSEMSFGVHWCPFGSVARLPSSFEEGEFSSTTYHELLGQHAIFA EHSAVSSASHPCPYVAYFGPTIHPSSSNSSGSVSDSSNFNSHWNGPSVPSEIPTSYAF PAVDLHYHGWEHHSPPFSTSSSRIGSSDQPSIPPVSQRSSRSSTDMPRSGSFMHPFVV GHSSGARAGSSVASSLIPPYPGSNARARDRVQALQAYYQQQQPSTSPAIRTPIIPGSR RSSSHRSLAQVGPVASSSDQVGGFYFVPSGTSGRNFQEAENPLSTRFHAWERDHLPSF SLNQVDRDSGWGAFHQAAGGSDPGIRSSSFRQRHGSERTSSQNRS" CDS join(39491467..39491656,39492277..39492446, 39492942..39493000,39493777..39493802,39493907..39494297, 39496102..39496328,39496454..39496458) /locus_tag="TCM_026663" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG004644t1" /codon_start=1 /product="RING/U-box superfamily protein isoform 2" /protein_id="EOY11513.1" /db_xref="Phytozome:Glyma20g38050.1" /db_xref="TAIR:AT3G05545.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9DHH4" /translation="MGLGSNGGDDVVVDDGDGGGDGGDCGNGEKSFCSVSCSICLETV ADNGDRSWAKLQCGHQFHLDCIGSAFNIKGAMQCPNCRKIEKGQWLYANGCRSYPEFS VDDWTHDEDLYDLSYSEMSFGVHWCPFGSVARLPSSFEEGEFSSTTYHELLGQHAIFA EHSAVSSASHPCPYVAYFGPTIHPSSSNSSGSVSDSSNFNSHWNGPSVPSEIPTSYAF PAVDLHYHGWEHHSPPFSTSSSRIGSSDQPSIPPVSQRSSRSSTDMPRSGSFMHPFVV GHSSGARAGSSVASSLIPPYPGSNARARDRVQALQAYYQQQQPSTSPAIRTPIIPGSR RSSSHRSLAQVGPVASSSDQG" mobile_element complement(39494540..39494904) /note="source:CACAO_hAT_E2876_scaffold_6 761 1136" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(39495005..39496029) /note="source:CACAO_hAT_E2876_scaffold_6 2 1025" /mobile_element_type="transposon:TIR/hAT" gene complement(39497425..39502923) /locus_tag="TCM_026665" /note="dbxref CacaoGD:Thecc1EG026665" mRNA complement(join(39497425..39497841,39497949..39498044, 39498147..39498180,39498807..39498839,39499947..39500045, 39500134..39500261,39500341..39500397,39500529..39500578, 39500938..39500995,39501414..39501460,39501544..39501646, 39501751..39501825,39501913..39501978,39502291..39502379, 39502676..39502759)) /locus_tag="TCM_026665" /product="RNA-binding family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30128.m008840" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004650t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s01700.3" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00844t00001" mRNA complement(join(39497610..39497841,39497949..39498044, 39498147..39498839,39499947..39500045,39500134..39500261, 39500341..39500397,39500529..39500578,39500938..39500995, 39501414..39501460,39501544..39501646,39501748..39501825, 39501913..39501978,39502291..39502379,39502676..39502923)) /locus_tag="TCM_026665" /product="RNA-binding family protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:30128.m008840" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004650t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s01700.3" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11830t2; inference alignment:Newbler:10:TSA:cgbaL_g00844t00001" mRNA complement(join(39497612..39497841,39497949..39498044, 39498147..39498180,39499947..39500045,39500134..39500261, 39500341..39500397,39500529..39500578,39500938..39500995, 39501414..39501460,39501544..39501646,39501751..39501825, 39501913..39501978,39502291..39502379,39502676..39502828)) /locus_tag="TCM_026665" /product="RNA-binding family protein isoform 4" /inference="alignment:exonerate- protein:2:ricco:30128.m008840" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004650t2" /inference="similar to AA sequence:Phytozome:POPTR_0013s01700.3" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00406t00002; inference alignment:Newbler:10:TSA:cgbaL_g00844t00001" mRNA complement(join(39497614..39497841,39497949..39498044, 39498147..39498839,39499947..39500045,39500134..39500261, 39500341..39500397,39500529..39500578,39500938..39500995, 39501414..39501460,39501544..39501646,39501751..39501825, 39501913..39501978,39502291..39502379,39502676..39502781)) /locus_tag="TCM_026665" /product="RNA-binding family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30128.m008840" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004650t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s01700.3" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00844t00001; inference alignment:Newbler:10:TSA:cgbaL_g00844t00001" CDS complement(join(39497827..39497841,39497949..39498044, 39498147..39498180,39499947..39500045,39500134..39500261, 39500341..39500397,39500529..39500578,39500938..39500995, 39501414..39501460,39501544..39501646,39501751..39501825, 39501913..39501978,39502291..39502374)) /locus_tag="TCM_026665" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG004650t2" /codon_start=1 /product="RNA-binding family protein isoform 4" /protein_id="EOY11517.1" /db_xref="Phytozome:POPTR_0013s01700.3" /db_xref="TAIR:AT1G09140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RFC0" /translation="MSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPP GYAFVEFEDPRDAEDAIRARDGYNFDGYRLRVELAHGGRRPSSSDRHSSYSGSSSRGP ARRSDYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFRDRGGMTGIVDYTNYDDMKY AIRKLDDSEFRNAFGRAYIRVKEYDSRYDSRHSYSRSPSHSPYSRSPSRSHSYSSRSR RRSRSKSPRAKHSRQSPSVSRSLSPRSRSVSPARSYSRSRSRSRSPTASPCGKHVSRS PLKDSPRRSQSRSRSISRSLSSSVQSD" CDS complement(join(39497827..39497841,39497949..39498044, 39498147..39498180,39498807..39498839,39499947..39500045, 39500134..39500261,39500341..39500397,39500529..39500578, 39500938..39500995,39501414..39501460,39501544..39501646, 39501751..39501825,39501913..39501978,39502291..39502374)) /locus_tag="TCM_026665" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG004650t1" /codon_start=1 /product="RNA-binding family protein isoform 1" /protein_id="EOY11514.1" /db_xref="Phytozome:POPTR_0013s01700.3" /db_xref="TAIR:AT1G09140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RFC0" /translation="MSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPP GYAFVEFEDPRDAEDAIRARDGYNFDGYRLRVELAHGGRRPSSSDRHSSYSGSSSRGP ARRSDYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFRDRGGMTGIVDYTNYDDMKY AIRKLDDSEFRNAFGRAYIRVKEYDSRYDSRHSYSRSPSHSPYSRSPSRSHSYSSRSR RRSRSKSPRAKHSRQSPSVSRSLSPRSRSVSPARSYSRSGSLRQSGDWISRSRSRSPT ASPCGKHVSRSPLKDSPRRSQSRSRSISRSLSSSVQSD" CDS complement(join(39498794..39498839,39499947..39500045, 39500134..39500261,39500341..39500397,39500529..39500578, 39500938..39500995,39501414..39501460,39501544..39501646, 39501751..39501825,39501913..39501978,39502291..39502374)) /locus_tag="TCM_026665" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG004650t1" /codon_start=1 /product="RNA-binding family protein isoform 2" /protein_id="EOY11515.1" /db_xref="Phytozome:POPTR_0013s01700.3" /db_xref="TAIR:AT1G09140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RFC0" /translation="MSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPP GYAFVEFEDPRDAEDAIRARDGYNFDGYRLRVELAHGGRRPSSSDRHSSYSGSSSRGP ARRSDYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFRDRGGMTGIVDYTNYDDMKY AIRKLDDSEFRNAFGRAYIRVKEYDSRYDSRHSYSRSPSHSPYSRSPSRSHSYSSRSR RRSRSKSPRAKHSRQSPSVSRSLSPRSRSVSPARSYSRSGSLRQSGDWMLGT" CDS complement(join(39498794..39498839,39499947..39500045, 39500134..39500261,39500341..39500397,39500529..39500578, 39500938..39500995,39501414..39501460,39501544..39501646, 39501748..39501825,39501913..39501978,39502291..39502374)) /locus_tag="TCM_026665" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG004650t1" /codon_start=1 /product="RNA-binding family protein isoform 3" /protein_id="EOY11516.1" /db_xref="Phytozome:POPTR_0013s01700.3" /db_xref="TAIR:AT1G09140.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RFC0" /translation="MSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPP GYAFVEFEDPRDAEDAIRARDGYNFDGYRLRVVELAHGGRRPSSSDRHSSYSGSSSRG PARRSDYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFRDRGGMTGIVDYTNYDDMK YAIRKLDDSEFRNAFGRAYIRVKEYDSRYDSRHSYSRSPSHSPYSRSPSRSHSYSSRS RRRSRSKSPRAKHSRQSPSVSRSLSPRSRSVSPARSYSRSGSLRQSGDWMLGT" gene 39503716..39508143 /locus_tag="TCM_026666" /note="dbxref CacaoGD:Thecc1EG026666" mRNA join(39503716..39503988,39504095..39504185, 39505300..39506380,39506816..39507057,39507750..39508143) /locus_tag="TCM_026666" /product="Hypoxia-responsive family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g38070.1" /inference="similar to AA sequence:Phytozome:Glyma20g38070.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc145t3" CDS join(39503919..39503988,39504095..39504185, 39505300..39505435) /locus_tag="TCM_026666" /codon_start=1 /product="Hypoxia-responsive family protein" /protein_id="EOY11518.1" /db_xref="Phytozome:Glyma20g38070.1" /db_xref="TAIR:AT3G05550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M9W0" /translation="MAESKSKFESIREWVVDHKLRTVGCLWLSGITGSIAYNWSQPSM KTSVKIIHARLHAQALTLAALAGAAVVEYYDHRNRPKADQYAKFIPVDSYSHKE" gene <39506356..>39506983 /locus_tag="TCM_026667" /note="dbxref CacaoGD:Thecc1EG026667" mRNA join(<39506356..39506380,39506816..>39506983) /locus_tag="TCM_026667" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:TAIR:AT5G27770.1.2" /note="quality class is strongpartial, express is strong, homology is ortholog strong, intron is medium, protein is partial; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc100t3" CDS join(<39506357..39506380,39506816..>39506983) /locus_tag="TCM_026667" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11519.1" /translation="SAFNAHSPDKLKMSRGSAAGPKGKKKGVTFTIDCSKPVEDKIME IASLEKFLQERIKVGGKAAA" mobile_element 39511626..39511685 /note="source:scaffold_2_CACTA_0262 17033 17089" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(39511632..39511690) /note="source:scaffold_9_CACTA_0936 4288 4341" /mobile_element_type="transposon:TIR/CACTA" mobile_element 39511646..39511707 /note="source:CACAO_M_S_E52236_F51_scaffold_5 1795 1849" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 39511657..39511715 /note="source:scaffold_10_CACTA_0130 1153 1211" /mobile_element_type="transposon:TIR/CACTA" gene 39512516..39514586 /locus_tag="TCM_026668" /note="dbxref CacaoGD:Thecc1EG026668" mRNA join(39512516..39512678,39513460..39513684, 39513871..39514586) /locus_tag="TCM_026668" /product="Ribosomal L18p/L5e family protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma02g47730.1" /inference="similar to AA sequence:ricco:30128.m008847" /note="quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.49 coverage; inference alignment:Newbler:10:TSA:cgbaB_g03229t00002" CDS join(39512540..39512678,39513460..39513684, 39513871..39514217) /locus_tag="TCM_026668" /note="dbxref ricco:30128.m008847" /codon_start=1 /product="Ribosomal L18p/L5e family protein" /protein_id="EOY11520.1" /db_xref="TAIR:AT5G27820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q1EHT9" /translation="MCLSVGLTFAHDEFKTACVLTRKGRPTTIVPQLPNRTPETAPPP NPGKLYDFKKALPDVLAEITEPNFLDWHRNLRIVLQSKKKSYYFKKTLSEVPAEDAEG FAIHFSKLKGFAFQFSKIFEMVIPPPVRPPRITKFLKPYVLKMHFTNKYVSAQVIHSP TATVASSASSQEKALRASMESTRDVAAAAKIGKLLGERLLLKEIPAVSVFLKREQKYH GKVKAVIDSLKEAGVKLL" gene 39516200..39517982 /locus_tag="TCM_026669" /note="dbxref CacaoGD:Thecc1EG026669" mRNA join(39516200..39516475,39516766..39516921, 39517853..39517982) /locus_tag="TCM_026669" /product="Dormancy/auxin associated family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031183001" /inference="similar to AA sequence:Phytozome:GSVIVT01031183001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2306t5; inference alignment:Newbler:10:TSA:cgbaP1_g12798t00001; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc388t5" mRNA join(39516262..39516475,39516763..39516921, 39517853..39517973) /locus_tag="TCM_026669" /product="Drm3-like protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031183001" /inference="similar to AA sequence:Phytozome:GSVIVT01031183001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g12798t00001; inference alignment:Newbler:10:TSA:cgbaP1_g12798t00001" mRNA join(39516277..39516475,39516763..39517068) /locus_tag="TCM_026669" /product="Dormancy/auxin associated family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031183001" /inference="similar to AA sequence:Phytozome:Glyma19g42060.4" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc388t9; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc388t5; inference alignment:Newbler:10:TSA:cgbaP1_g12798t00001" mRNA join(39516277..39516475,39516763..39516921, 39517003..39517068) /locus_tag="TCM_026669" /product="Dormancy/auxin associated family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031183001" /inference="similar to AA sequence:Phytozome:Glyma19g42060.4" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc388t5; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc388t5; inference alignment:Newbler:10:TSA:cgbaP1_g12798t00001" CDS join(39516361..39516475,39516763..39516921, 39517853..39517956) /locus_tag="TCM_026669" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Drm3-like protein isoform 1" /protein_id="EOY11521.1" /db_xref="Phytozome:GSVIVT01031183001" /db_xref="TAIR:AT1G56220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q3HVK6" /translation="MGLLDQLWDDTVAGPRPDNGLGKLRKHSTFTFRPSSAKESDGGS VRSYGDETSEEPTRVTRSIMIVKPPGYQNGSPPISPAGSTPPVSPFSGGRESFRFRRK STSDAYEKASEVGPRSPHPPYDV" CDS join(39516361..39516475,39516766..39516921, 39517853..39517956) /locus_tag="TCM_026669" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Dormancy/auxin associated family protein isoform 2" /protein_id="EOY11522.1" /db_xref="Phytozome:GSVIVT01031183001" /db_xref="TAIR:AT1G56220.3" /db_xref="UniProtKB/TrEMBL:UniRef50_Q3HVK6" /translation="MGLLDQLWDDTVAGPRPDNGLGKLRKHSTFTFRPSSAKADGGSV RSYGDETSEEPTRVTRSIMIVKPPGYQNGSPPISPAGSTPPVSPFSGGRESFRFRRKS TSDAYEKASEVGPRSPHPPYDV" CDS join(39516361..39516475,39516763..39517052) /locus_tag="TCM_026669" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Dormancy/auxin associated family protein isoform 4" /protein_id="EOY11524.1" /db_xref="Phytozome:Glyma19g42060.4" /db_xref="TAIR:AT1G56220.4" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H0W7" /translation="MGLLDQLWDDTVAGPRPDNGLGKLRKHSTFTFRPSSAKESDGGS VRSYGDETSEEPTRVTRSIMIVKPPGYQNGSPPISPAGSTPPVSPFSGNNISHFLNYF LLLMPNLSLIYFLKSQDILSRKGGLLCLETSP" CDS join(39516361..39516475,39516763..39516921, 39517003..39517052) /locus_tag="TCM_026669" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Dormancy/auxin associated family protein isoform 3" /protein_id="EOY11523.1" /db_xref="Phytozome:Glyma19g42060.4" /db_xref="TAIR:AT1G56220.4" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8H0W7" /translation="MGLLDQLWDDTVAGPRPDNGLGKLRKHSTFTFRPSSAKESDGGS VRSYGDETSEEPTRVTRSIMIVKPPGYQNGSPPISPAGSTPPVSPFSDILSRKGGLLC LETSP" gene complement(39518139..39518939) /locus_tag="TCM_026670" /note="dbxref CacaoGD:Thecc1EG026670" mRNA complement(39518139..39518939) /locus_tag="TCM_026670" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.51 coverage" CDS complement(39518151..39518396) /locus_tag="TCM_026670" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11525.1" /translation="MTSTTSLPCSTFSKQPHPHPIQHQKPIIILAPQKQEKRQYTQHG RSITGENNTEILFQQVFSGETNKLRRGKRDKLNLYKR" gene 39519297..39522024 /locus_tag="TCM_026671" /note="dbxref CacaoGD:Thecc1EG026671" mRNA join(39519297..39519458,39519986..39520344, 39520746..39521080,39521436..39521599,39521690..39522024) /locus_tag="TCM_026671" /product="Hedgehog-interacting protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031181001" /inference="similar to AA sequence:ricco:30128.m008849" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03045t00001" CDS join(39519350..39519458,39519986..39520344, 39520746..39521080,39521436..39521562) /locus_tag="TCM_026671" /note="dbxref ricco:30128.m008849" /codon_start=1 /product="Hedgehog-interacting protein" /protein_id="EOY11526.1" /db_xref="TAIR:AT5G27830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q69L70" /translation="MIQSSKIREEGKAMKDMELGFLIFLLLFNLLLPFSSGHTDGVCV SQGGRFPPFSSEGKPPKRVGKGHKDLTLCRVFRKMTCCDAAQTHPALLSIRKLALTGE ASPECLQLWELLECSICDPRVGVRPGPPLICTSFCDRVFQACSNAYFSMDAKTQVLAP CGVNDFVCGRASEWTSNGTELCRAAGFAVKQSDVVHGGVEETSCYGGKASLDSIADSW GASQSEKAHKTGNFGLLEEFQQWLHDMPSGERVSWAVGGMVLTAGLLFISKRKSHSQR QKLAAIQRTARRLDGKMNQTSPSTQGNRKGSRR" gene complement(39522093..39522637) /locus_tag="TCM_026672" /note="dbxref CacaoGD:Thecc1EG026672" mRNA complement(39522093..39522637) /locus_tag="TCM_026672" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS complement(39522301..39522558) /locus_tag="TCM_026672" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11527.1" /translation="MALNERIFPFRRGNRRKIYGNQPAQKSSMMEIYIPIANDNMRST CKGVAPPSSLLPYQKCDPWKQMFSSLIYFINRTAGQDRWRS" gene complement(39522708..39525272) /locus_tag="TCM_026673" /note="dbxref CacaoGD:Thecc1EG026673" mRNA complement(join(39522708..39523303,39523409..39523606, 39524078..39524637,39524922..39525129)) /locus_tag="TCM_026673" /product="Calcineurin-like metallo-phosphoesterase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s01620.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042670t1" /inference="similar to AA sequence:Phytozome:Glyma19g42050.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaL_g09573t00001" mRNA complement(join(39522816..39523303,39523409..39523606, 39524078..39524637,39524922..39525272)) /locus_tag="TCM_026673" /product="Calcineurin-like metallo-phosphoesterase superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s01620.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042670t1" /inference="similar to AA sequence:Phytozome:Glyma19g42050.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11820t5; alternateUTRof:Thecc1EG026673t1; inference alignment:Newbler:10:TSA:cgbaL_g09573t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc762t6" CDS complement(join(39523280..39523303,39523409..39523606, 39524078..39524637,39524922..39525117)) /locus_tag="TCM_026673" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG042670t1" /codon_start=1 /product="Calcineurin-like metallo-phosphoesterase superfamily protein isoform 1" /protein_id="EOY11528.1" /db_xref="Phytozome:Glyma19g42050.1" /db_xref="TAIR:AT3G05580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P62136" /translation="MMMMTMEGMMDKGVLDDIIRRLLEGRGGKQVQLSEGEIRQLCVN ARQVFLSQPNLLQIRAPIRICGDIHGQYQDLLRLFEYGGYPPSANYLFLGDYVDRGKQ SLETICLLLAYKIRYPDRIYLLRGNHEDAKINRIYGFYDECKRRFNVRLWKIFTDCFN SLPVAALIDDKILCMHGGLSPELENLDQIKEIQRPTEVPDNGLLCDLLWSDPDPKVEG WADSDRGVSCTFGADIVTEFLDKNDLDLICRGHQVVEDGYEFFAKRRLVTIFSAPNYG GEFDNAGALLSVDEALVCSFEILKPADNKASPSSSNKLPLKKPPKIGKI" CDS complement(join(39523280..39523303,39523409..39523606, 39524078..39524637,39524922..39525117)) /locus_tag="TCM_026673" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG042670t1" /codon_start=1 /product="Calcineurin-like metallo-phosphoesterase superfamily protein isoform 1" /protein_id="EOY11529.1" /db_xref="Phytozome:Glyma19g42050.1" /db_xref="TAIR:AT3G05580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P62136" /translation="MMMMTMEGMMDKGVLDDIIRRLLEGRGGKQVQLSEGEIRQLCVN ARQVFLSQPNLLQIRAPIRICGDIHGQYQDLLRLFEYGGYPPSANYLFLGDYVDRGKQ SLETICLLLAYKIRYPDRIYLLRGNHEDAKINRIYGFYDECKRRFNVRLWKIFTDCFN SLPVAALIDDKILCMHGGLSPELENLDQIKEIQRPTEVPDNGLLCDLLWSDPDPKVEG WADSDRGVSCTFGADIVTEFLDKNDLDLICRGHQVVEDGYEFFAKRRLVTIFSAPNYG GEFDNAGALLSVDEALVCSFEILKPADNKASPSSSNKLPLKKPPKIGKI" mobile_element 39525980..39526027 /note="source:CACAO_M_E84179_F14_scaffold_10 3848 3894" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(39528106..39529239) /locus_tag="TCM_026674" /note="dbxref CacaoGD:Thecc1EG026674" mRNA complement(join(39528106..39528979,39529061..39529239)) /locus_tag="TCM_026674" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30128.m008851" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004683t1" /inference="similar to AA sequence:ricco:30318.m000017" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11787t1" CDS complement(join(39528537..39528979,39529061..39529064)) /locus_tag="TCM_026674" /note="dbxref ricco:30318.m000017; paralog of Thecc1EG004683t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11530.1" /db_xref="TAIR:AT1G02816.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N4K1" /translation="METISLGNKMPTAYEVLEDFNFPIGLLPKGVVGYDLDSSSGKFS AFLNGSCSFSLEGSYQLKYKNTIKGYISKGKLSSLEGVSVKLWFMWVNIVEVSRRGDD LEFSVGIAGANFPIDNFEECPRCGCGLNCNDQQVRKMRKNPFVSSY" gene complement(39529579..39532839) /locus_tag="TCM_026675" /note="dbxref CacaoGD:Thecc1EG026675" mRNA complement(join(39529579..39530287,39531475..39531594, 39531967..39532128,39532246..39532456,39532646..39532682, 39532780..39532839)) /locus_tag="TCM_026675" /product="Nodulin MtN3 family protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s01600.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021237t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s01600.1" /note="quality class is strong, express is medium, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.43 coverage" CDS complement(join(39530114..39530287,39531475..39531594, 39531967..39532128,39532246..39532456,39532646..39532682, 39532780..39532813)) /locus_tag="TCM_026675" /note="paralog of Thecc1EG021237t1" /codon_start=1 /product="Nodulin MtN3 family protein" /protein_id="EOY11531.1" /db_xref="Phytozome:POPTR_0013s01600.1" /db_xref="TAIR:AT4G15920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T116" /translation="MTRLSFIVGVVGNIISVLLFLSPVGTFRRVLRNRSTEEFESLPY ICTLLNSALWTYYGVTKPGSFLVATVNGFGVVVEMIYVTLFLIFAPPTMRAKTGMLFG LLDVGFPAATVLATQLILKGDLRIDVIGFLCAGLNIVMYGSPLAAMKTVVTTKSVEYM PFLLSFFVFLNGVVWTFYAVLVEDYFLGVPNGIGFLLGTAQLLLYAIYSRRQRPSKAS SHDLEDEWQRERLMSSSSTNLEEKNEV" gene complement(39534332..39536788) /locus_tag="TCM_026676" /note="dbxref CacaoGD:Thecc1EG026676" mRNA complement(join(39534332..39535030,39535614..39535775, 39535995..39536205,39536317..39536353,39536437..39536788)) /locus_tag="TCM_026676" /product="Nodulin MtN3 family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:29579.m000197.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026677t1" /inference="similar to AA sequence:ricco:29579.m000197" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:PASA:2:TSA:puevd3b025805t1a2; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1195t5_C2" mRNA complement(join(39534620..39535030,39535204..39535323, 39535614..39535775,39535995..39536205,39536317..39536353, 39536437..39536785)) /locus_tag="TCM_026676" /product="Nodulin MtN3 family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:29579.m000197.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026677t1" /inference="similar to AA sequence:ricco:29579.m000197" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1195t5_C2" CDS complement(join(39534851..39535030,39535614..39535775, 39535995..39536205,39536317..39536353,39536437..39536635)) /locus_tag="TCM_026676" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:29579.m000197; paralog of Thecc1EG026677t1" /codon_start=1 /product="Nodulin MtN3 family protein isoform 2" /protein_id="EOY11533.1" /db_xref="TAIR:AT4G15920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T116" /translation="MSSSLTSLVPSDVKTLSEFGNFREHSNPNIAVDLQSKNLHTSSE FFFLQPVYSLSMVTLVTIFGLLGNITTGLVYLSPAKTFWHIVQRGSTEEFDSLPYVVK LLNGYMWVYYGLVKPNSILVATINGFGAVLELIYVIIFLILAPPRMRVITAILFGILD VVFPVAVVLISQLSFNREMQINISGFLSLLFSVATYGSPLSIMIPNGSGFVLGTAQLV LYAMYWKPKQPKRTSDNVEDDWQHEHLIADSGPSLKNNESRADA" CDS complement(join(39534851..39535030,39535204..39535323, 39535614..39535775,39535995..39536205,39536317..39536353, 39536437..39536635)) /locus_tag="TCM_026676" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:29579.m000197; paralog of Thecc1EG026677t1" /codon_start=1 /product="Nodulin MtN3 family protein isoform 1" /protein_id="EOY11532.1" /db_xref="TAIR:AT4G15920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9T116" /translation="MSSSLTSLVPSDVKTLSEFGNFREHSNPNIAVDLQSKNLHTSSE FFFLQPVYSLSMVTLVTIFGLLGNITTGLVYLSPAKTFWHIVQRGSTEEFDSLPYVVK LLNGYMWVYYGLVKPNSILVATINGFGAVLELIYVIIFLILAPPRMRVITAILFGILD VVFPVAVVLISQLSFNREMQINISGFLSLLFSVATYGSPLSIMKTVVTTKSVEYMPFL LSFILFINGLTWTVYAVLTRDWFIGIPNGSGFVLGTAQLVLYAMYWKPKQPKRTSDNV EDDWQHEHLIADSGPSLKNNESRADA" gene complement(39537897..39540128) /locus_tag="TCM_026677" /note="dbxref CacaoGD:Thecc1EG026677" mRNA complement(join(39537897..39538407,39538596..39538712, 39538870..39539031,39539100..39539310,39539404..39539440, 39539852..39540128)) /locus_tag="TCM_026677" /product="Nodulin MtN3 family protein" /inference="alignment:exonerate- protein:2:frave:gene03053.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026676t1" /inference="similar to AA sequence:frave:gene03053" /note="quality class is medium, express is medium, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.34 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11806t1" CDS complement(join(39538228..39538407,39538596..39538712, 39538870..39539031,39539100..39539310,39539404..39539440, 39539852..39539942)) /locus_tag="TCM_026677" /note="dbxref frave:gene03053; paralog of Thecc1EG026676t1" /codon_start=1 /product="Nodulin MtN3 family protein" /protein_id="EOY11534.1" /db_xref="TAIR:AT4G15920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I7C6" /translation="MSRLTKILVHEGKSQSVFGFVSKQTTGQCGCNIMSGLVYLSPTK TFWRIVKHRSTEDFESIPYVCTLLNAYFWIYYGLIKPNSLLVATINCFGIVAETVYLT LFLIFAPPGLRARTATLVAILDVGFPVAAILLTHSMLHGYLRINVAGLLCVVFSMISY GSPLAAMKTVVRTKSVEYMPFLLSLILFINGGIWTFYALLAKDYVGVPNGIGFFLGTI QLLLYAMYWKPQKLKKMSDNLEEGWQHDQPPNNSSLISSLLPERSAD" mobile_element complement(39540018..39540079) /note="source:scaffold_3_CACTA_0392 1322 1383" /mobile_element_type="transposon:TIR/CACTA" gene complement(39540195..39542768) /locus_tag="TCM_026678" /note="dbxref CacaoGD:Thecc1EG026678" mRNA complement(join(39540195..39540674,39542013..39542768)) /locus_tag="TCM_026678" /product="Alpha/beta-Hydrolases superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:29333.m001098.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG041202t1" /inference="similar to AA sequence:Phytozome:POPTR_0006s21320.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1385t1" CDS complement(join(39540368..39540674,39542013..39542680)) /locus_tag="TCM_026678" /note="paralog of Thecc1EG041202t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein, putative" /protein_id="EOY11535.1" /db_xref="Phytozome:POPTR_0006s21320.1" /db_xref="TAIR:AT5G06570.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FG13" /translation="MGSLPHVVEDCFGLLKLYSDGSISRNPEIPSATPLLNDASVLYK DFLFDSKENLHLRLYKPTSSTAHAKLPILFYFHGGGFCFGSRSFPHFHNLSIRLAAAF NMLVIAPDHRLAPENRLPAAVDDACQALKWLQGQAMHGNDEDMDTLLTGVDFDRVFVL GDSSGGNLAHHLAVRFKAGSIELAPVRVRGYVLLAPFFGGIVRTRSEEERPCEAFWNL EMYERFWRLSIPAGSTLDHPLVNPFGPSGQNLAEVPLDPILVVVGGGEILRDRVEDYA ARLKHLGKKTEFVEFEGQQHGFLTDHPFSEVAEKVIQRIRDFILENSN" mobile_element complement(39543240..39543256) /note="source:scaffold_1_CACTA_0033 171 262" /mobile_element_type="transposon:TIR/CACTA" mobile_element 39543257..39543340 /note="source:CACAO_MITE_S193_scaffold_8 59 141" /mobile_element_type="transposon:TIR/MITE" gene complement(39546441..39551082) /locus_tag="TCM_026679" /note="dbxref CacaoGD:Thecc1EG026679" mRNA complement(join(39546441..39547055,39547144..39547263, 39547519..39547680,39547840..39548050,39548278..39548314, 39548413..39548567)) /locus_tag="TCM_026679" /product="Nodulin MtN3 family protein isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026680t1" /inference="similar to AA sequence:Phytozome:GSVIVT01031170001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1339t3" CDS complement(join(39546720..39547055,39547144..39547263, 39547519..39547680,39547840..39548050,39548278..39548314, 39548413..39548446)) /locus_tag="TCM_026679" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG026680t1" /codon_start=1 /product="Nodulin MtN3 family protein isoform 1" /protein_id="EOY11536.1" /db_xref="Phytozome:GSVIVT01031170001" /db_xref="TAIR:AT4G15920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I7C0" /translation="MASLSFIIGIIGNVISILVFASPIKTFWWVVKKKSTENYNGVPY ITTLLSTSLWTFYGTMNPDGLLVVTLNVTGAIFQLIYVTLFLIYAPKDKKIKTAKLVA VLDVGFPGVLIAVTLLAIHGNTRLAFVGILCAVLTIGMYASHLSVMRTVIRTKSVEYM PFLLSFFLFLNAGVWSAYSLLVKDIYIGVPNAIGFVLGSAQLILYVIYKNKSASAKSP EAMEEEGSAHLVKGGIEMHSLEDDLKNRSLNKCRSLPKPQVGRQYSLQKIMKTLSLTP YELQSSYPLHSDVEDGNTDTDHP" mRNA complement(join(<39546770..39547070,39547144..39547263, 39547519..39547680,39547840..39548050,39548278..39548314, 39548413..39548592,39550983..39551082)) /locus_tag="TCM_026679" /product="Nodulin MtN3 family protein isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026680t2" /inference="similar to AA sequence:Phytozome:GSVIVT01031170001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is weak, protein is partial3; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1338t3; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1339t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11840t1" CDS complement(join(<39546771..39547070,39547144..39547263, 39547519..39547680,39547840..39548050,39548278..39548314, 39548413..39548446)) /locus_tag="TCM_026679" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG026680t2" /codon_start=1 /product="Nodulin MtN3 family protein isoform 2" /protein_id="EOY11537.1" /db_xref="Phytozome:GSVIVT01031170001" /db_xref="TAIR:AT4G15920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I7C0" /translation="MASLSFIIGIIGNVISILVFASPIKTFWWVVKKKSTENYNGVPY ITTLLSTSLWTFYGTMNPDGLLVVTLNVTGAIFQLIYVTLFLIYAPKDKKIKTAKLVA VLDVGFPGVLIAVTLLAIHGNTRLAFVGILCAVLTIGMYASHLSVMRTVIRTKSVEYM PFLLSFFLFLNAGVWSAYSLLVKDIYIGIHSFQVPNAIGFVLGSAQLILYVIYKNKSA SAKSPEAMEEEGSAHLVKGGIEMHSLEDDLKNRSLNKCRSLPKPQVGRQYSLQKIMKT LSLTPYELQSSY" mobile_element complement(39549117..39549191) /note="source:scaffold_7_CACTA_0779 10183 10265" /mobile_element_type="transposon:TIR/CACTA" gene complement(39549494..39551407) /locus_tag="TCM_026680" /note="dbxref CacaoGD:Thecc1EG026680" mRNA complement(join(39549494..39549914,39550003..39550122, 39550387..39550548,39550696..39550906,39551053..39551089, 39551191..39551387)) /locus_tag="TCM_026680" /product="Nodulin MtN3 family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30128.m008852" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026679t1" /inference="similar to AA sequence:Phytozome:GSVIVT01031170001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g04094t00001" CDS complement(join(39549597..39549914,39550003..39550122, 39550387..39550548,39550696..39550906,39551053..39551089, 39551191..39551224)) /locus_tag="TCM_026680" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG026679t1" /codon_start=1 /product="Nodulin MtN3 family protein isoform 1" /protein_id="EOY11538.1" /db_xref="Phytozome:GSVIVT01031170001" /db_xref="TAIR:AT4G15920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I7C0" /translation="MASLSFIVGIIGNVISILVFASPIKTFWWVVKKKSTENYKGVPY ITTLLSTSLWTFYGIINPDGLLVTTVNGAGAIFQLIYVTLFLIYAPKDKKIKTAKLVA VLDVGFLGAVIAVTLLAIHGSMRLTFVGILCAGLTIGMYASPLSAMRTVIRTKSVEYM PFLFSFFLFLNAGVWSAYSLLVKDIYIGVPNAIGFVLGSAQLILYFIFKNKSASAKSP EAMEEEGSAHLVKGGIEMHSLEDDLKNRSLNKGKSLPKPHVSRQNSLQNIMKTVSLTP YELQSSYLLHSDVVDHP" mRNA complement(join(<39549629..39549929,39550003..39550122, 39550387..39550548,39550696..39550906,39551053..39551089, 39551191..39551407)) /locus_tag="TCM_026680" /product="Nodulin MtN3 family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30128.m008852" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026679t2" /inference="similar to AA sequence:Phytozome:GSVIVT01031170001" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1344t6; inference alignment:Newbler:10:TSA:cgbaP1_g04094t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1339t3" mRNA complement(join(<39549629..39549914,39550003..39550122, 39550387..39550548,39550696..39551089,39551191..39551407)) /locus_tag="TCM_026680" /product="Nodulin MtN3 family protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:30128.m008852" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026679t1" /inference="similar to AA sequence:Phytozome:GSVIVT01031170001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is paralog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1344t4; inference alignment:Newbler:10:TSA:cgbaP1_g04094t00001; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1339t3" CDS complement(join(<39549630..39549929,39550003..39550122, 39550387..39550548,39550696..39550906,39551053..39551089, 39551191..39551224)) /locus_tag="TCM_026680" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG026679t2" /codon_start=1 /product="Nodulin MtN3 family protein isoform 2" /protein_id="EOY11539.1" /db_xref="Phytozome:GSVIVT01031170001" /db_xref="TAIR:AT4G15920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I7C0" /translation="MASLSFIVGIIGNVISILVFASPIKTFWWVVKKKSTENYKGVPY ITTLLSTSLWTFYGIINPDGLLVTTVNGAGAIFQLIYVTLFLIYAPKDKKIKTAKLVA VLDVGFLGAVIAVTLLAIHGSMRLTFVGILCAGLTIGMYASPLSAMRTVIRTKSVEYM PFLFSFFLFLNAGVWSAYSLLVKDIYIGIHTFQVPNAIGFVLGSAQLILYFIFKNKSA SAKSPEAMEEEGSAHLVKGGIEMHSLEDDLKNRSLNKGKSLPKPHVSRQNSLQNIMKT VSLTPYELQSSY" CDS complement(join(<39549630..39549914,39550003..39550122, 39550387..39550548,39550696..39550950)) /locus_tag="TCM_026680" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG026679t1" /codon_start=1 /product="Nodulin MtN3 family protein isoform 3" /protein_id="EOY11540.1" /db_xref="Phytozome:GSVIVT01031170001" /db_xref="TAIR:AT4G15920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I7C0" /translation="MKMLVPNLVYISYSRKTFWWVVKKKSTENYKGVPYITTLLSTSL WTFYGIINPDGLLVTTVNGAGAIFQLIYVTLFLIYAPKDKKIKTAKLVAVLDVGFLGA VIAVTLLAIHGSMRLTFVGILCAGLTIGMYASPLSAMRTVIRTKSVEYMPFLFSFFLF LNAGVWSAYSLLVKDIYIGVPNAIGFVLGSAQLILYFIFKNKSASAKSPEAMEEEGSA HLVKGGIEMHSLEDDLKNRSLNKGKSLPKPHVSRQNSLQNIMKTVSLTPYELQSSY" mobile_element complement(39552329..39552862) /note="source:scaffold_8_CACTA_0858 14198 14733" /mobile_element_type="transposon:TIR/CACTA" gene 39552933..39556403 /locus_tag="TCM_026681" /note="dbxref CacaoGD:Thecc1EG026681" mRNA join(39552933..39553188,39554179..39554260, 39554370..39554437,39554545..39554642,39554989..39555125, 39555210..39555277,39555610..39555704,39556082..39556403) /locus_tag="TCM_026681" /product="Pseudouridine synthase and archaeosine transglycosylase domain-containing protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031169001" /inference="similar to AA sequence:Phytozome:POPTR_0013s01530.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc16t4" CDS join(39553178..39553188,39554179..39554260, 39554370..39554437,39554545..39554642,39554989..39555125, 39555210..39555277,39555610..39555704,39556082..39556134) /locus_tag="TCM_026681" /codon_start=1 /product="Pseudouridine synthase and archaeosine transglycosylase domain-containing protein" /protein_id="EOY11541.1" /db_xref="Phytozome:POPTR_0013s01530.1" /db_xref="TAIR:AT1G09150.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PCQ5" /translation="MFKKFSSEDVSSQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLP KKAPLIVAKCQNHLNLVLVNSVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIR FVLAGANIMCPGLTSPGGALDDEVDAETPVAIMAEGKQHALAIGFTKMSAKDIRAINK GIGVDNMHYLNDGLWKVFILNYVVFGNGAARMSIFWEQLLCQL" gene 39557038..39558952 /locus_tag="TCM_026682" /note="dbxref CacaoGD:Thecc1EG026682" mRNA join(39557038..39557212,39557307..39557396, 39557481..39557609,39557721..39557903,39558587..39558952) /locus_tag="TCM_026682" /product="Ribosomal protein L18" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0002s20400.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004688t1" /inference="similar to AA sequence:Phytozome:POPTR_0002s20400.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Newbler:10:TSA:cgbaL_g02917t00002" CDS join(39557210..39557212,39557307..39557396, 39557481..39557609,39557721..39557903,39558587..39558745) /locus_tag="TCM_026682" /note="paralog of Thecc1EG004688t1" /codon_start=1 /product="Ribosomal protein L18" /protein_id="EOY11542.1" /db_xref="Phytozome:POPTR_0002s20400.1" /db_xref="TAIR:AT3G05590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C1EHB6" /translation="MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTGSKF NAVILKRLFMSKVNKPPLSLSRLIEFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTAL RFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHS HTKPYVRSKGRKFERARGRRNSKGFRV" gene complement(39559326..39562936) /locus_tag="TCM_026683" /note="dbxref CacaoGD:Thecc1EG026683" mRNA complement(join(39559326..39559761,39559868..39560109, 39560195..39560713,39562691..39562936)) /locus_tag="TCM_026683" /product="Alpha/beta-Hydrolases superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s01510.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004689t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s01510.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Newbler:10:TSA:cgbaB_g11379t00001" CDS complement(join(39559515..39559761,39559868..39560109, 39560195..39560659)) /locus_tag="TCM_026683" /note="paralog of Thecc1EG004689t1" /codon_start=1 /product="Alpha/beta-Hydrolases superfamily protein" /protein_id="EOY11543.1" /db_xref="Phytozome:POPTR_0013s01510.1" /db_xref="TAIR:AT3G05600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M9W5" /translation="MDGIQHRMVNVNGITMHVAEKGQGPVILFLHGFPELWYTWRHQI LALSSLGYHTVAPDLRGYGDTEASTCVTSYTCLHIVGDLIALIDSLGVEQVFLVAHDW GAIIGWYLCMFRPDRVKAFVCLSVPFMPRKPKMKPVESMRLLFGEDYYICRFQEPGKI EAEIAHVGTSEVLKKVLSTREPGPPRLPKDDAFGIKPDTPVTLPSWFSEEDLSYYANK FNQKGFTGGLNYYRALDLNWELTAPWTNVQVKLPVKFIVGDLDTVYTTPGIKEYVQSG GFKRDVPLLDEVVVMEGVGHFINQERAEEINSLIYDFIKKF" gene complement(39563483..39565914) /locus_tag="TCM_026684" /note="dbxref CacaoGD:Thecc1EG026684" mRNA complement(join(39563483..39563694,39564060..39564118, 39564228..39564272,39564639..39564701,39564775..39564850, 39565600..39565914)) /locus_tag="TCM_026684" /product="Uncharacterized protein isoform 2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog weak, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11955t1; inference alignment:Newbler:10:TSA:cgbaB_g01371t00002; inference alignment:Newbler:10:TSA:cgbaL_g01253t00002" mRNA complement(join(39563520..39563919,39564060..39564116, 39564228..39564272,39564639..39564701,39564775..39564850, 39565600..39565871)) /locus_tag="TCM_026684" /product="Uncharacterized protein isoform 1" /inference="similar to AA sequence:Phytozome:Glyma19g41980.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01253t00002; inference alignment:Newbler:10:TSA:cgbaL_g01253t00002" CDS complement(join(39563622..39563694,39564060..39564118, 39564228..39564272,39564639..39564701,39564775..39564850, 39565600..39565829)) /locus_tag="TCM_026684" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY11545.1" /db_xref="TAIR:AT5G27860.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K5Q4" /translation="MAASSSSATSHSSSDSSSDSSSSHAKRRRHHSNRRDRDRDSLKI RKKSRSLGKRRRRKHRCHSSDDSYSSSGSDYSRSNGSSDSEHESNHSKRHKKSDRPKK LKQKERNKSHRHKRHKHKVKEKPQDEGSSSPVQLSKSFLGVTRMIVYAVVLSLAKRSC FPSVPRECKILVTSALRSCIL" CDS complement(join(39563827..39563919,39564060..39564116, 39564228..39564272,39564639..39564701,39564775..39564850, 39565600..39565829)) /locus_tag="TCM_026684" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY11544.1" /db_xref="Phytozome:Glyma19g41980.1" /db_xref="TAIR:AT5G27860.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4K5Q4" /translation="MAASSSSATSHSSSDSSSDSSSSHAKRRRHHSNRRDRDRDSLKI RKKSRSLGKRRRRKHRCHSSDDSYSSSGSDYSRSNGSSDSEHESNHSKRHKKSDRPKK LKQKERNKSHRHKRHKHKVKEKPQDEGSSSPVQLSKFLGRDKDDSVRRSAVSGKKILL KLDKSKEDKAAESKRNELLKFLNASFD" mobile_element complement(39564123..39564193) /note="source:CACAO_M_S_E51240_F74_scaffold_4 2233 2307" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(39566959..39569948) /locus_tag="TCM_026685" /note="dbxref CacaoGD:Thecc1EG026685" mRNA complement(join(39566959..39567939,39568026..39569690, 39569878..39569948)) /locus_tag="TCM_026685" /product="Pectinesterase, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma0248s00220.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021251t1" /inference="similar to AA sequence:ricco:30128.m008858" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc2051t1" CDS complement(join(39567179..39567939,39568026..39569136)) /locus_tag="TCM_026685" /note="dbxref ricco:30128.m008858; paralog of Thecc1EG021251t1" /codon_start=1 /product="Pectinesterase, putative" /protein_id="EOY11546.1" /db_xref="TAIR:AT5G27870.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N4L3" /translation="MASTDDGQRKKRIAIIAVCSFLLVAMVVAVTVGVSINDTSSDDG TSNSSKSSQVSASVKAIKSVCQPTDFRKTCEEQLRAEAGDTTDIKELVQAAFKAAMKS ASQAVQNSTTLRDLEKDPRTKKALDVCKQLMTYSIKELKKSLDQIDKLDINKFDRMLA DLKIWLSATITNQQTCLDGFKNTTSKAGEKMKKALNVSMELSRNGLAIATEMSAVLKQ LEIQGVSRRLLQENLPVLGHGDWSTYLDIPMTRRRRLLQDNEPPVLGHGQFEIQPGVR RLMAAPPSRIKADIVVAKDGSGNFTTINAAMSSIPLNATKPFVIYIKEGVYEENLEFG YKMTNVALIGDGKEKTRITGHLNNADGVPTFRTATVAVNGDYFFAKNIGFENSAGAAK FQAVALLVISDFSVFYNCSMDGYQDTLYVHSKRQFYRDCTITGTIDFVFGDAAAVFQN CTFLVRVPLNGQQCIVTAQGRTDARQPTAIVIQNSTFTAAPELVPVKDKYPTYLGRPW GNFSRTIIMESYLDDLIKPEGWAIWDGPWGLNTSFYSEFNNYGPGSNKTGRVTWRGIK RISQATAFGFTPGKFINGAAWIKPRRVPYTPGFFSINSTNVQGQYQYEMRSNSRVAH" mobile_element 39569218..39569254 /note="source:CACAO_Mariner_E36_scaffold_2 1081 1117" /mobile_element_type="transposon:TIR/Tc1-Mariner" gene 39570107..39571598 /locus_tag="TCM_026686" /note="dbxref CacaoGD:Thecc1EG026686" mRNA 39570107..39571598 /locus_tag="TCM_026686" /product="C2H2 and C2HC zinc fingers superfamily protein" /inference="alignment:exonerate- protein:2:TAIR:AT5G01860.1" /inference="similar to AA sequence:Phytozome:POPTR_0006s06260.1" /note="quality class is weak, express is weak, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.32 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11856t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc4176t1" CDS 39570427..39571371 /locus_tag="TCM_026686" /codon_start=1 /product="C2H2 and C2HC zinc fingers superfamily protein" /protein_id="EOY11547.1" /db_xref="Phytozome:POPTR_0006s06260.1" /db_xref="TAIR:AT5G01860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5B9E5" /translation="MLSATMRYSTIISKIHLQINPSINRTSSVSNLLQQTKPVFFLQR AKHQSKAAMETLCGKPCSSDTSSISAASGETQNKGGGIDGNMMAKLKEKVVVVQESHD HQSNQARSGLHLSLGAKFSGDEMIHGSEVELKLSSMGSSQASKQQQQQQQTKSKARAF TCGFCKKEFSTSQALGGHQNAHKQERAIAKRRKEMDSGALGHRQYPYYSYSSLSQASL YGSFNRALGTRMESMIHKPAPAYPWTTLGCRFGHGGIMMESFQAPKSSTLPTMAAAAS SIAAKKPTSSRDFLSKMDLSESDNRQDDDPGLDLSLRL" mobile_element complement(39571722..39571787) /note="source:scaffold_6_CACTA_0703 3460 3526" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(39571729..39571794) /note="source:CACAO_M_E42369_F96_scaffold_5 716 754" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(39573336..39575808) /locus_tag="TCM_026687" /note="dbxref CacaoGD:Thecc1EG026687" mRNA complement(join(39573336..39574321,39574404..39575808)) /locus_tag="TCM_026687" /product="Pectinesterase-2 precursor" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g41960.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004695t1" /inference="similar to AA sequence:ricco:30128.m008860" /note="quality class is medium, express is weak, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.12 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11858t1" CDS complement(join(39573624..39574321,39574404..39575388)) /locus_tag="TCM_026687" /note="dbxref ricco:30128.m008860; paralog of Thecc1EG004695t1" /codon_start=1 /product="Pectinesterase-2 precursor" /protein_id="EOY11548.1" /db_xref="TAIR:AT4G02330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SRX4" /translation="MAPKASALCSIALLLMLFSPSLASFPTSVFNSESICNYTPHADF CKCILPPNKFTTMFDYGRIAVHRSLFTAHSFLGSVKYFLGLPSTSFLSTIRALQDCQF LAEMNVDFLSYTLETINSKDSLDSFLADDLHTLLSAVLTNVQTCLEGLEATPSASSIK NGLLPSISNGSKFYSVSLALFRHGWIHDITKSLTGRNYVFSNLGNGRNAPLPLRMSSH DQAIYESACGQKHVQTDGEEVSVSQVVVVNSDGSGNFTTINDAVAAAPNNSGDSNQYF VIYVVAGVYEEYVSIPKTKQNLMMIGDGINRTVITGNRNFVDGSTTFNSATFAVVGKG FVAVNITFRNTAGPIKHQAVAVRNGADMSTFYSCSFEGYQDTLYAHSLRQFYRDCDIY GTIDFIFGNAAVVFQNCNIYPRLPLENQFNTITAQGRIDPNQNTGISIHNSVIKAADD LASSNGATKTYLGRPWKQYSRTVYMQSFMDKLIEPSGWSEWSGNFALDTLYYAEYKNK GPGSNTDSRVRWPGYHGNINDIDAANLTVSKFIQGESWLPATGVPFEGGLHY" gene complement(39576531..39579184) /locus_tag="TCM_026688" /note="dbxref CacaoGD:Thecc1EG026688" mRNA complement(join(39576531..39577804,39578145..39579184)) /locus_tag="TCM_026688" /product="Plant invertase/pectin methylesterase inhibitor superfamily" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s01470.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG037443t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s01470.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11864t1" CDS complement(join(39577134..39577804,39578145..39579084)) /locus_tag="TCM_026688" /note="paralog of Thecc1EG037443t1" /codon_start=1 /product="Plant invertase/pectin methylesterase inhibitor superfamily" /protein_id="EOY11549.1" /db_xref="Phytozome:POPTR_0013s01470.1" /db_xref="TAIR:AT3G05620.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M9W7" /translation="MAFANFLLILLMLPSFEAIPDVTPSTKQNLTTQPLIIQACTDVD NHDLCLSNIQAELQSLGPQTPSSVLHAALRASLNEARQAIETMTKFTGLSVSYREQIA IEDCKELLDFSVSELAWSLAEMKKIRDGDRNAEYEGNLKAWLSAALSNQDTCLEGFEG TDHHLESFIRGSLKQVTQLIGNVLAMYTQLHSLPFRPPRNSTSTNTSSEFPEWITDGD QELLRTNPSGMHVDAVVSLDRNGHYRTITDAINAAPSYSNRRYIIYVKKGVYKENIDM KKKKTNIMLVGDGIGQTVVTGNRNFMQGWTTFRTATVAVSGKGFIARDMTFRNTAEPQ NHQAVALRVDSDQSAFYRCSMEGHQDTLYIHSLRQFYRECHIYGTIDFIFGNGAAVLQ NCKIFTRVPLPLQKVTITAQGRKNPNQSTGFSIQNSYILATQPTYLGRPWKQYSRTVF MNTYMGALVQPRGWLEWYGDFALNTLWYGEYRNYGPGASLSGRVKWPGYHIIRDASTA NFFTVGRFIDGRSWLPATGVKFTDGLSK" gene complement(39579244..39583774) /locus_tag="TCM_026689" /note="dbxref CacaoGD:Thecc1EG026689" mRNA complement(join(39579244..39580309,39581037..39581331, 39581416..39581545,39581752..39582151,39582290..39582394, 39582494..39582619,39583093..39583774)) /locus_tag="TCM_026689" /product="F-box family protein" /inference="alignment:exonerate- protein:2:ricco:30128.m008863" /inference="similar to AA sequence:Phytozome:POPTR_0013s01460.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11897t2" CDS complement(join(39580064..39580309,39581037..39581331, 39581416..39581545,39581752..39582151,39582290..39582394, 39582494..39582619,39583093..39583755)) /locus_tag="TCM_026689" /codon_start=1 /product="F-box family protein" /protein_id="EOY11550.1" /db_xref="Phytozome:POPTR_0013s01460.1" /db_xref="TAIR:AT5G27920.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GZ31" /translation="MALFRSNKNIFSLTEDLLVRVREKLATESDRKSFRLVCREFHRI DLLTRKHLRVLRIEFLPSLLQKHPQLQSLDLSACPRIDDRVVSFLLTRVGPGSNSPGW ANWTRGLKCLVLSRTTGLRFTGLEMLARACPCLKSVDVSYCCGFGDREAAALSCAVGL RELKMDKCLHLSDVGLAKIAVGCLKLEKLSLKWCMDITDLGVDLLCKKCLDLKYLDVS YLKVTNESLHSIASLLKLEVLGLVACPLIDDAGLQFIGHGGPLLRVIDVSRCEGVSSS GLISVVRGHSNLLELNAGYCLSELSTTLLHWIKNLKHLEMIRIDGARIFESSFPVIST NCKSLIEIGLSKCVGVTNMGIMRLVSGCINLRVLNLTCCHSITDAAISAIADSCRNLV CLKLESCHMITEKGLCQLGSSCLLLEEIDLTDCCGVNDKGLEYLSRCSQLLCLKLGLC TNISGKGLSYIGSNCTKIHELDLYRCSGIGDDGLEALSRGCKKLAKLNLSYCKEVSDR GLGYIGHLEELSDLEMRGLFKITGVGLEAVAAGCKRLADLDLKHCDKVDDSGYWALAY YSRNLRQINLSYCGISDIALCMVMGNLTRLQEAKLVHLGNVTVEGFELALRACCIRIK KVKLLAPLRLLLSSEILETLHARGCIIRWD" gene complement(39584932..39590090) /locus_tag="TCM_026691" /note="dbxref CacaoGD:Thecc1EG026691" mRNA complement(join(39584932..39586394,39586494..39586654, 39586939..39587063,39587145..39587662,39588227..39588496, 39588803..39589183,39589492..39589609,39589699..39590033)) /locus_tag="TCM_026691" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s01450.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s01450.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11915t4" mRNA complement(join(39584932..39586394,39586494..39586659, 39586939..39587063,39587145..39587662,39588227..39588496, 39588803..39589183,39589492..39589609,39589699..39590033)) /locus_tag="TCM_026691" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s01450.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s01450.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:PASA:2:TSA:puevd3b025820t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11915t4" CDS complement(join(39585867..39586394,39586494..39586654, 39586939..39587063,39587145..39587662,39588227..39588496, 39588803..39589183,39589492..39589609,39589699..39589904)) /locus_tag="TCM_026691" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY11551.1" /db_xref="Phytozome:POPTR_0013s01450.1" /db_xref="TAIR:AT1G56230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NKW1" /translation="MSNQTLNDMSSSSSSSSGVRSLSEISEKDTVHLSVDLVSAARRN IGFLRSVNECHWLHQRATIVEAIRRYEEVWMPLISDLTVVGSTPPMVLPPFDVEWVWF CHTLNPVAYRKYCESRFSKLIGKPAIFNEENEEYALMRCREIWVQRHEFEPFENEVES DSQDPPGINQDLFNQVKEHKFLYSKFSEPYFCELVYLIAARQRYRGFLYMMQRFGDGC LRFVPALDIVLMLLTHQSYPTVYVEDLKDKWDDMGKVVGLWETVKEKEVEESKNLWER TFDQPYEKAGGGLAVELDNLKAKRPIYWEVSDVDVNTKYKSMIPRFLLEVCVFVRLND RTKVSNGDTKHKFLRLRAVRCHRELKLDELISNFSYDSWRKAWHLYCEFGTRGLMVEL RGRGGRCFKGSKSLDSMPFYWNDLLRAPSITLSRKVDQVRIVASITPPVQAPYLLKCV PDRVTDDSGAMISDVILKLNNYRPQKGRWLSRTVLDHAGRECFVVRIRVGGGFWRRGA ETPSAVNWEDRIIEIREGSWSYVAGSIGRAPEKVVGTATPKESPEQWQAAWEFSTGDE LLINWGSSTSSSGLSFCLKTQESFDSSVMLLRGRKMQYQDKVAGCAAKETKTRQEEYA KEADDEYVTLVRFTEENPTGRATALLNWKLLVVELLPEEDAVLVLLLCVSILRTVSEM RKEDVGSLLIRRRLKEAKLGARDWGSVVLHTSSLPSSIASPCLQPWYWNANKVMAQHE GNSITRQPASNYSPVEGGDMLYKRGIIT" mRNA complement(join(<39586365..39586394,39586494..39586654, 39586939..39587000,39587145..39587662,39588227..39588496, 39588803..39589183,39589492..39589609,39589699..39590090)) /locus_tag="TCM_026691" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s01450.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s01450.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc676t1_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11915t4" CDS complement(join(<39586365..39586394,39586494..39586654, 39586939..39587000,39587145..39587662,39588227..39588496, 39588803..39589183,39589492..39589609,39589699..39589904)) /locus_tag="TCM_026691" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY11553.1" /db_xref="Phytozome:POPTR_0013s01450.1" /db_xref="TAIR:AT1G56230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NKW1" /translation="MSNQTLNDMSSSSSSSSGVRSLSEISEKDTVHLSVDLVSAARRN IGFLRSVNECHWLHQRATIVEAIRRYEEVWMPLISDLTVVGSTPPMVLPPFDVEWVWF CHTLNPVAYRKYCESRFSKLIGKPAIFNEENEEYALMRCREIWVQRHEFEPFENEVES DSQDPPGINQDLFNQVKEHKFLYSKFSEPYFCELVYLIAARQRYRGFLYMMQRFGDGC LRFVPALDIVLMLLTHQSYPTVYVEDLKDKWDDMGKVVGLWETVKEKEVEESKNLWER TFDQPYEKAGGGLAVELDNLKAKRPIYWEVSDVDVNTKYKSMIPRFLLEVCVFVRLND RTKVSNGDTKHKFLRLRAVRCHRELKLDELISNFSYDSWRKAWHLYCEFGTRGLMVEL RGRGGRCFKGSKSLDSMPFYWNDLLRAPSITLSRKVDQVRIVASITPPVQAPYLLKCV PDRVTDDSGAMISDVILKLNNYRPQKGRWLSRTVLDHAGRECFVVRIRIIEIREGSWS YVAGSIGRAPEKVVGTATPKESPEQWQAAWEFSTGDELLINWGSSTSSSGLSFCLKTQ ESFDSSVMLLRGRKMQ" CDS complement(join(39586643..39586659,39586939..39587063, 39587145..39587662,39588227..39588496,39588803..39589183, 39589492..39589609,39589699..39589904)) /locus_tag="TCM_026691" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY11552.1" /db_xref="Phytozome:POPTR_0013s01450.1" /db_xref="TAIR:AT1G56230.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q6NKW1" /translation="MSNQTLNDMSSSSSSSSGVRSLSEISEKDTVHLSVDLVSAARRN IGFLRSVNECHWLHQRATIVEAIRRYEEVWMPLISDLTVVGSTPPMVLPPFDVEWVWF CHTLNPVAYRKYCESRFSKLIGKPAIFNEENEEYALMRCREIWVQRHEFEPFENEVES DSQDPPGINQDLFNQVKEHKFLYSKFSEPYFCELVYLIAARQRYRGFLYMMQRFGDGC LRFVPALDIVLMLLTHQSYPTVYVEDLKDKWDDMGKVVGLWETVKEKEVEESKNLWER TFDQPYEKAGGGLAVELDNLKAKRPIYWEVSDVDVNTKYKSMIPRFLLEVCVFVRLND RTKVSNGDTKHKFLRLRAVRCHRELKLDELISNFSYDSWRKAWHLYCEFGTRGLMVEL RGRGGRCFKGSKSLDSMPFYWNDLLRAPSITLSRKVDQVRIVASITPPVQAPYLLKCV PDRVTDDSGAMISDVILKLNNYRPQKGRWLSRTVLDHAGRECFVVRIRVGGGFWRRGA ETPSAVNWEDRIIEIREGSWSYVAGSIGRAPVQRKW" gene complement(39593653..39594724) /locus_tag="TCM_026692" /note="dbxref CacaoGD:Thecc1EG026692" mRNA complement(join(39593653..39594078,39594161..39594724)) /locus_tag="TCM_026692" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.43 coverage" CDS complement(join(39593778..39594078,39594161..39594438)) /locus_tag="TCM_026692" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11554.1" /translation="MQAKTQEMGWHHSQPMLFGAQGGVYSSKGPNLVQVLSPEPISIQ AIHLSSSYPFSIFLESFVILLVATISRGSHVRMKIRECSAKCRTHPNLYLFKGKRESK KGGTRRDQKGGTCRDQDHYTPKKVHASDEDNTQKVYASDEDNTDEVVADPAIDTKAST FIAKFHTASLVSEAIHPSTQAEYTYHPSYEGH" mobile_element complement(39595289..39595447) /note="source:CACAO_MITE_S193_scaffold_8 1 150" /mobile_element_type="transposon:TIR/MITE" mobile_element 39598837..39598931 /note="source:scaffold_9_CACTA_0946 4903 5000" /mobile_element_type="transposon:TIR/CACTA" gene complement(39599231..39605384) /locus_tag="TCM_026693" /note="dbxref CacaoGD:Thecc1EG026693" mRNA complement(join(39599231..39599456,39602376..39602634, 39602865..39602892,39603323..39603739,39603891..39603981, 39604230..39604326,39605010..39605384)) /locus_tag="TCM_026693" /product="Phloem 2-B15-like protein" /inference="alignment:exonerate- protein:2:ricco:30128.m008866" /inference="similar to AA sequence:ricco:30128.m008866" /note="quality class is medium, express is weak, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.30 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc4775t1" CDS complement(join(39602425..39602634,39602865..39602892, 39603323..39603739,39603891..39603981,39604230..39604326, 39605010..39605264)) /locus_tag="TCM_026693" /note="dbxref ricco:30128.m008866" /codon_start=1 /product="Phloem 2-B15-like protein" /protein_id="EOY11555.1" /db_xref="TAIR:AT1G09155.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BIA6" /translation="MNLDQLPQDCFAQILSLASPIDACRISVLSSTIRVAADSDNVWE KFLPSDYQDILSRLLHPLVYSSKKKLFLRLCNPHLIDGGHKSMALENRSMPIHHVKGD MTDCECHGYKTWMAIGKKRYVLSAKELKTWAENPLFWTWKSFPASRIQSRMLSPDIVH EAHLIVKFVDRAYGLDILPSKVSVEVGDVKSEGTVRLRQHETKKQCLETTWFSNQVEA STSMGFRGTEERVPCKRADGWTEIELGNFYNHGSGDAEVKMCLQEVAGTHLKAGLVVE GIELRPKQFSIIPEVAELKTETNAEKSRVIEGDDRVFSKREDGWREIEVKEFFNGEGD EEVKMSSMEVNKGHQLKGVLIVDGIEVRPKS" gene complement(39606075..39607514) /locus_tag="TCM_026694" /note="dbxref CacaoGD:Thecc1EG026694" mRNA complement(join(39606075..39606694,39606779..39606897, 39606970..39607514)) /locus_tag="TCM_026694" /product="Phloem protein 2-B15, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s02190.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026697t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s02190.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11887t2" CDS complement(join(39606232..39606694,39606779..39606897, 39606970..39607440)) /locus_tag="TCM_026694" /note="paralog of Thecc1EG026697t1" /codon_start=1 /product="Phloem protein 2-B15, putative" /protein_id="EOY11556.1" /db_xref="Phytozome:POPTR_0005s02190.1" /db_xref="TAIR:AT1G09155.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BIA6" /translation="MKRTGLRKDICNFIAPSFVFCEPSFYSFSWKFRYNQQIPIGKVQ QSNSFAFGFDSFIGLLQKNRKKKKKMECLDMNVLPESCVAVILSLTSPADACKSSLVS STFQSASESDSVWERFLPSDYGEIVSKASDNLEFSSKKELYLLLCNPVLVADGKMSFK LERSTGRISYILSARELSITWSNDPMYWVWKSIPESRFAEVAELKTVSWLEIHGKIRS KTLTPNTRYGAYLLLKITDRAFGLDLIPSEISLEVGNGAKFTNTAYLRSQDSKKQRME DLFYGNRKQMLKSRVIEGEDRVLSEREDGWMEIELGEFFNGEGDKAVKMSLMEVKGHQ LKGGLIVEGIELRPKS" gene complement(39608887..39611794) /locus_tag="TCM_026695" /note="dbxref CacaoGD:Thecc1EG026695" mRNA complement(join(39608887..39609268,39609895..39610062, 39610160..39610315,39610409..39610537,39610850..39610963, 39611043..39611307,39611588..39611794)) /locus_tag="TCM_026695" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is ortholog weak, intron is none, protein is complete" CDS complement(join(39609048..39609268,39609895..39610062, 39610160..39610315,39610409..39610537,39610850..39610963, 39611043..39611307,39611588..39611602)) /locus_tag="TCM_026695" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11557.1" /translation="MHVKKYLLLLVMANPDTLYIPFFLLSTLISLLLLNQNISTAKDD DLIRETCTQYIEFLDTCISTLEADPYSRIAITLLTSPTNPLCLPIELKSNVNVTVALD GSGHFKTIGAALDSVPSNTQFPYIILVKEDISASQFVAKDMTIINSAGPEGRQAVALR AYEFKITFYRCSIEAVSLQNSFICLRRLLQGQAYCTGERIQGQQHRNRHSQLHPHFST GIHSIQSNKFNGTFALSTLYYAEYGNFGPGAHTEGRVNWPGYLLLTDCKDVENSTVKN FICGLLVTSIAALHRLVKLVAALLRGYASKVDTHMSGNSVYWVHVSLIKSSSFAVEIF WFKSKREIKVERRKKGMYCKK" gene 39609199..39609692 /locus_tag="TCM_026696" /note="dbxref CacaoGD:Thecc1EG026696" mRNA 39609199..39609692 /locus_tag="TCM_026696" /product="Uncharacterized protein" /note="quality class is medium, express is medium, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.47 coverage" CDS 39609259..39609582 /locus_tag="TCM_026696" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11558.1" /translation="MEVTETQANKTLSFVSQFYNNETDFRTKSGIRSCMHNYGDSVTI INITGLPSFDRKNYRDAYDSIGYTREGAAECNDTGVAMFFDRNNEVIMFTTIVLDLLN NLITN" mobile_element complement(39611649..39611708) /note="source:scaffold_9_CACTA_0946 4925 4984" /mobile_element_type="transposon:TIR/CACTA" mobile_element 39611709..39611723 /note="source:CACAO_MITE126_scaffold_8 1 79" /mobile_element_type="transposon:TIR/MITE" mobile_element 39612044..39612076 /note="source:CACAO_M_E65313_F266_scaffold_9 181 213" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(39613606..39615195) /locus_tag="TCM_026697" /note="dbxref CacaoGD:Thecc1EG026697" mRNA complement(join(39613606..39614318,39614404..39614522, 39614603..39614695,39614794..39615195)) /locus_tag="TCM_026697" /product="Phloem protein 2-B15, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s02190.1.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026694t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s02190.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1526t1" CDS complement(join(39613886..39614318,39614404..39614522, 39614603..39614695,39614794..39615057)) /locus_tag="TCM_026697" /note="paralog of Thecc1EG026694t1" /codon_start=1 /product="Phloem protein 2-B15, putative" /protein_id="EOY11559.1" /db_xref="Phytozome:POPTR_0005s02190.1" /db_xref="TAIR:AT1G09155.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BIA6" /translation="MLPEDCLSAILSFTTPEDAFRSSLVSSTFRSAVDSDVVWESFLP PDYPEIVLSSVSPLKFSSKKELFQCLCDPVLIDGGNKVNFLVFACIESASEIVVSIST CTSKNMGNPTMSDISRAIFKLEKSSGKKSYMLSAKELSITWSSNPLYWGWISMSESRF SRVAVLRTTDWLEIRGNIRTQILTPNTTYGAYLILKISDRAYGLDSMPSEITVEVGNQ VSFGSVFLQHQERKKQREMWKLVEGNHQGVLSERGDGWMEIELGQFFSGENDEEVKMS LLEVKGCHLKGGLVIEGIEVRPKEHQ" gene 39618915..39621180 /locus_tag="TCM_047053" /note="dbxref CacaoGD:Thecc1EG047053" mRNA join(39618915..39619211,39619299..39619365, 39619458..39619497,39619746..39619878,39620203..39620274, 39620440..39620520,39620693..39620754,39620841..39621180) /locus_tag="TCM_047053" /product="Tetratricopeptide repeat-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031157001" /inference="similar to AA sequence:Phytozome:POPTR_0013s01390.1" /note="quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc3344t7_C2" CDS join(39618930..39619211,39619299..39619365, 39619458..39619497,39619746..39619878,39620203..39620274, 39620440..39620520,39620693..39620754,39620841..39620907) /locus_tag="TCM_047053" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein" /protein_id="EOY11560.1" /db_xref="Phytozome:POPTR_0013s01390.1" /db_xref="TAIR:AT3G05625.1" /translation="MALTQNLKPTISLSLSSFHRHSSFSPFFPLNSQTKPFFYSSRIH TLRPPSLTLTFSRRLFLLPSVSRIWDALTGNKNAREAVIAIRRGMLLFRQGDVSGSLA EFDKAIELDSRQKAYLWQRGLSLYYLDRYEEGAEQFRLDVAQNPNDTEESIWCFLCEA QLYGVDGARQSFLEVGRDPRPVMLEAYNMFKDGGDPEKLVAAFSNGQENEYFYASLYT GLYYESQKKPDAAKVHMLSACQSPYGQRSDDYMASLAKVHCLCRNWSPE" mobile_element complement(39619317..39619378) /note="source:CACAO_M_E23103_F207_scaffold_4 536 598" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 39621801..39623449 /note="source:CACAO_PIF_E144_scaffold_10 1203 2398" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 39624488..39632111 /locus_tag="TCM_047054" /note="dbxref CacaoGD:Thecc1EG047054" mRNA join(39624488..39624872,39625604..39625705, 39625918..39626033,39626128..39626269,39626453..39626620, 39626803..39626976,39627405..39627647,39627724..39627840, 39627986..39628125,39628223..39628372,39628622..39628778, 39628865..39629389,39629627..39629737,39629860..39630006, 39630085..39630282,39630364..39630465,39631113..39631244, 39631419..39631484,39631579..39631602,39631751..39632111) /locus_tag="TCM_047054" /product="Phospholipase D P2" /inference="alignment:exonerate- protein:2:ricco:30128.m008869" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021267t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s01380.1" /note="quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc602t2" CDS join(39624648..39624872,39625604..39625705, 39625918..39626033,39626128..39626269,39626453..39626620, 39626803..39626976,39627405..39627647,39627724..39627840, 39627986..39628125,39628223..39628372,39628622..39628778, 39628865..39629389,39629627..39629737,39629860..39630006, 39630085..39630282,39630364..39630465,39631113..39631244, 39631419..39631484,39631579..39631602,39631751..39631966) /locus_tag="TCM_047054" /note="paralog of Thecc1EG021267t1" /codon_start=1 /product="Phospholipase D P2" /protein_id="EOY11561.1" /db_xref="Phytozome:POPTR_0013s01380.1" /db_xref="TAIR:AT3G05630.1" /translation="MSSERLIAGDAMRSDETMHNPTAALPWSGSFRQCGENDSIFEEL PKAMIVSVSRPDTGDMSPMLLSYTIEVQYKQFKWRLLKKASQVLYLHFALKKRVIIEE FHEKQEQVKEWLQSLGIVDQVAVVQDDDEPDDGAIPLHHEGSSRNRNVPSLAALPILR PTLGGQQIVSDKAKVAMQGYLNHFLGNMDIVNSREVCKFLEVSKLSFSWEYGPKLKEG YVMVKHLSQVSGDDDIGCFPCQWFSCWNNSWKKVWAVLKPGFLALLEDPFDTKLLDIV VFDVLPMSNEDVKSPVYLADQIKERNPLFYAFKVSCGSRSINLRVTSNGKAKEWVAAI NYAGIRAPDGWCYPHRFGSFAPPRGSNEDGSQAQWFIDGKAAFEAIAASIEKAKSEIF ITGWWLCPELYLRRPFQSNSSSRLDELLEAKAKQGVQIYILLYKEVSIALKIKSLCSK KLLRNIHENVRVLRYPDHLSTGIYLWSHHEKLVIVDYQICFIGGLDLCFGRYDTVEHR VGDCPPFTWPGKDYYNPRESEPNSWEESMKDELERGKYPRMPWHDVHCALWGPPCRDV ARHFVQRWNHAKRNKAPHEQTIPLLMPQHHMVLPHYMGNREIDIESKGEDHQKDLSRQ DSFSSRSPFEDIPLLLPQESDGLLVSNGDQKLNGLLSKHDPLSKEHGDHGSSLSSHDS EVDSLGSDTQIKVTADDHHSMDPRSNLESNEMPQSDMEVSDEWWETTVNDNNDASADE YGETGPRTACHCQVIRSVSQWSAGTSQTEDSIHSAYCSLIEKAEHLIYIENQFFISGL AEDEIIQNRVLEALYRRILRAYKEQKCFRVVVVIPLLPGFQGGLDDTGAATVRALVHW QYRTISREKTSILHNLNAKLGHKTWDYISFYGLRSYGRLSDGGPAATSQVYVHSKLMI IDDRIALIGSSNINDRSLLGSRDSEIGVVIEDKEFLESTMNGEPWKAGKFAHSLRCAL WSEHLGLHQGEISKISDPVLEQTYRKLWLATAEANSMIFQDEKLGHTTIDLGVAPEKL ETKENGEVETEDPMERLKLIQGHLVLFPLKFMCQEDLRPVFNESEFYASPQVFH" gene complement(39632299..39635715) /locus_tag="TCM_026699" /note="dbxref CacaoGD:Thecc1EG026699" mRNA complement(join(39632299..39633225,39634130..39634305, 39635494..39635715)) /locus_tag="TCM_026699" /product="Ribosomal L18p/L5e family protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma09g27910.1" /inference="similar to AA sequence:frave:gene13505" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g15238t2" CDS complement(join(39632555..39633225,39634130..39634247)) /locus_tag="TCM_026699" /note="dbxref frave:gene13505" /codon_start=1 /product="Ribosomal L18p/L5e family protein, putative" /protein_id="EOY11562.1" /db_xref="TAIR:AT1G31817.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C6TCH3" /translation="MYPLSSIRQAQLFSTSALLQRFSSFNWVSQASSNGSGFLGCLKS FSAGAKFYENVGNPRTNLDQQSVNNNVSAIYASSFRSFRHLSYQRHFETGWDPKRQRG FEIARGSETMNLVRKVLEEDGKSIFGGSQFLRYKNFEQDADFVHIKLMRNNTFVTVTD SNGNKKCGASSGQLSELKGGAKVSRYAAEATAEHVGRLARNMGIKSVVVRVKGFTHFK KKRQAILSFREGFSDSRSDNPVVHIEDTTRRPHNGCRLPKKRRV" gene complement(39635621..39639514) /locus_tag="TCM_026700" /note="dbxref CacaoGD:Thecc1EG026700" mRNA complement(join(39635621..39635883,39636172..39636407, 39636556..39636779,39636861..39636978,39637168..39637476, 39637579..39637888,39639044..39639514)) /locus_tag="TCM_026700" /product="Phosphatase 2C family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s02180.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021268t2" /inference="similar to AA sequence:Phytozome:POPTR_0013s01370.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g15252t2" mRNA complement(join(39636086..39636270,39636574..39636779, 39636861..39636978,39637168..39637457,39637596..39637888, 39639044..39639221)) /locus_tag="TCM_026700" /product="Phosphatase 2C family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s02180.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021268t2" /inference="similar to AA sequence:ricco:30128.m008870" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g01849t00002; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g15252t2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc557t4_C2" CDS complement(join(39636192..39636407,39636556..39636779, 39636861..39636978,39637168..39637476,39637579..39637821)) /locus_tag="TCM_026700" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG021268t2" /codon_start=1 /product="Phosphatase 2C family protein isoform 1" /protein_id="EOY11563.1" /db_xref="Phytozome:POPTR_0013s01370.1" /db_xref="TAIR:AT5G27930.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WRB2" /translation="MRHFSSMFNGLARSFSIRRGKNSENDDGREAAEAMAKDAKKNDL ILRSSGFVNVDGSNNLASVFSKRGRKGVNQDCAIVWEEFGCQADMLFCGIFDGHGPWG HFVAKKVRESLPSSLLCHWQETLAQTSLDPDIDLESDKKHQRFDIWKHSYLKTCAAVD QELQQYRKIDSFYSGTTALTIVRQGDLMYVANIGDSRAVLATTSDDGDLVPVQLTVDF KPNLPQEAERIIQCKGRVFCLHDEPGVHRVWLPDEESPGLAMSRAFGDYCIKEYGLIS VPEVTQRQITSRDQFVVLATDGVWDVISNQEAIQIVSSTPDKAKAAKCLVECAAHAWK KKRKGIAMDDISVICLLFHSSAVSQHEVNLVTTSK" CDS complement(join(39636220..39636270,39636574..39636779, 39636861..39636978,39637168..39637457,39637596..39637821)) /locus_tag="TCM_026700" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30128.m008870; paralog of Thecc1EG021268t2" /codon_start=1 /product="Phosphatase 2C family protein isoform 2" /protein_id="EOY11564.1" /db_xref="TAIR:AT5G27930.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q0WRB2" /translation="MRHFSSMFNGLARSFSIRRGKNSENDDGREAAEAMAKDAKKNDL ILRSSGFVNVDGSNNLASVFSKRGRKGVNQDYMLFCGIFDGHGPWGHFVAKKVRESLP SSLLCHWQETLAQTSLDPDIDLESDKKHQRFDIWKHSYLKTCAAVDQELQQYRKIDSF YSGTTALTIVRQGDLMYVANIGDSRAVLATTSDDGDLVPVQLTVDFKPNLPQEAERII QCKGRVFCLHDEPGVHRVWLPDEESPGLAMSRAFGDYCIKEYGLISVPEVTQRQITSR DQFVYFSHLPLVPLICCISA" gene complement(39640096..39650781) /locus_tag="TCM_026701" /note="dbxref CacaoGD:Thecc1EG026701" mRNA complement(join(39640096..39640245,39647769..39647929, 39648025..39648178,39650391..39650781)) /locus_tag="TCM_026701" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031156001" /inference="similar to AA sequence:Phytozome:GSVIVT01031156001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1159t3" mobile_element complement(39641730..39642978) /note="source:scaffold_5_CACTA_0614 1445 2645" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(39644820..39644878) /note="source:INTACT224_F176_scaffold_8-int 15951 16009" /mobile_element_type="retrotransposon:LTR/Gypsy" CDS complement(join(39647810..39647929,39648025..39648178, 39650391..39650494)) /locus_tag="TCM_026701" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11565.1" /db_xref="Phytozome:GSVIVT01031156001" /db_xref="TAIR:AT1G56260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I4N1" /translation="MASPAIKPGALVTLPELRPSSEFFKEGASLRVTGKLQEYSVETA IAVIADDSATLKVDTQHLRELSFRVGSIFQFIGELHIQPNSEAILQARAGRNVDGIDL NLYHQALQLVRQFQAERVNSATT" mobile_element complement(39652482..39652562) /note="source:CACAO_hAT_E2824_scaffold_6 1295 1358" /mobile_element_type="transposon:TIR/hAT" mobile_element 39652576..39652849 /note="source:CACAO_hAT_E71_scaffold_1 573 861" /mobile_element_type="transposon:TIR/hAT" gene 39656373..39665431 /locus_tag="TCM_026702" /note="dbxref CacaoGD:Thecc1EG026702" mRNA join(39656373..39657036,39657692..39657871, 39657990..39658103,39658411..39658569,39658673..39658847, 39658965..39659094,39659511..39659626,39659743..39659878, 39659957..39660066,39660210..39660279,39660352..39660425, 39660510..39660605,39660683..39660778,39661271..39661398, 39661584..39661818,39661908..39662075,39662159..39662245, 39662581..39662733,39662813..39662923,39663027..39663206, 39663276..39663404,39663511..39663606,39663884..39664066, 39664155..39664330,39664409..39665431) /locus_tag="TCM_026702" /product="TOPLESS-related 3 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g41840.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021273t1" /inference="similar to AA sequence:ricco:30128.m008872" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12032t3" mRNA join(39656736..39657036,39657692..39657871, 39657990..39658103,39658411..39658569,39658673..39658847, 39658965..39659094,39659511..39659626,39659743..39659878, 39659957..39660066,39660210..39660279,39660352..39660425, 39660510..39660605,39660683..39660778,39661271..39661398, 39661584..39661818,39661908..39662075,39662159..39662245, 39662581..39662733,39662813..39662923,39663027..39663209, 39663276..39663404,39663511..39663606,39663884..39664066, 39664152..39664330,39664408..39664924) /locus_tag="TCM_026702" /product="TOPLESS-related 3 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g41840.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021273t1" /inference="similar to AA sequence:ricco:30128.m008872" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12032t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12032t3; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc428t34" mRNA join(39656736..39657036,39657692..39657871, 39657990..39658103,39658411..39658569,39658673..39658847, 39658965..39659094,39659511..39659626,39659743..39659878, 39659957..39660066,39660210..39660279,39660352..39660425, 39660510..39660605,39660683..39660778,39661271..39661398, 39661584..39661818,39661908..39662075,39662159..39662245, 39662581..39662733,39662813..39662923,39663097..39663206, 39663276..39663404,39663511..39663606,39663884..39664066, 39664155..39664330,39664409..39664924) /locus_tag="TCM_026702" /product="TOPLESS-related 3 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g41840.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021273t1" /inference="similar to AA sequence:ricco:30128.m008872" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12032t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12032t3; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc428t34" CDS join(39656957..39657036,39657692..39657871, 39657990..39658103,39658411..39658569,39658673..39658847, 39658965..39659094,39659511..39659626,39659743..39659878, 39659957..39660066,39660210..39660279,39660352..39660425, 39660510..39660605,39660683..39660778,39661271..39661398, 39661584..39661818,39661908..39662075,39662159..39662245, 39662581..39662733,39662813..39662923,39663027..39663206, 39663276..39663404,39663511..39663606,39663884..39664066, 39664155..39664330,39664409..39664625) /locus_tag="TCM_026702" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30128.m008872; paralog of Thecc1EG021273t1" /codon_start=1 /product="TOPLESS-related 3 isoform 1" /protein_id="EOY11566.1" /db_xref="TAIR:AT5G27030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q84JM4" /translation="MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEK VQAGEWEEVEKYLAGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILVSDLK VFSTFNEELYKEITQLLTLNNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDK LAFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHTCAPPNGPLAPTPVNL PVAAVAKPAAYTSLGAHSPFPPTAAAANAGALAGWMANASASSSVQAAVVTASSIPVP QNQVSVLKRPRTPPAAPGVVEYQNPDHEHLMKRLRPAQSVEEVTYPTPLRPQAWSLDD LPRTVALTMHQGSTVTSMDFCPSQQTLLLVGSTNGEITLWELGMRERLATKPFKIWEM STCSMTFQALMVNDATISVSRVTWSPDGSFVGVAFSKHLIHLYAYPGPNDLIPRLEID AHVGGVNDLAFAHPNKQLCIVTCGDDKLIKVWDSMTGQKVFNFEGHDAPVYSICPHHK ENIQFIFSTAVDGKIKAWLYDNMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGE SFLVEWNESEGAIKRTYVGFRKKSAGVVSFDTTQNHFLAAGEDSQIKFWDMDNINLLT FTDAEGGLPSLPRVRFNKEGNLLAVTTADNGFKILANAVGLRSLRATETSSFDPLRTP IVSAAIKASGSSAVTNAGPVSCKVERSSPVRPSPILNGVDPLGRSVEKARVVDDVIEK TKPWQLAEIVDPIQCRLVTLPDSTDTSSKVVRLLYTNSGVGILALGSNGVQKLWKWPR NEQNPSGKATANVVPQHWQPNSGLLMTNDVSGVNLEEAVPCIALSKNDSYVMSATGGK VSLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKL RGHQKRITGLAFSTSLNILVSSGADAHLCVWSIDTWEKRKSVLIQIPAGKAPTGDTRV QFHSDQIRMLVVHETQLAIYDASKMERVRQWVPQDVLPAPISYAAYSCNSQSVYATFC DGNVGVFDADSLRLRCRISSSVYLSQAILKGNQAVYPLVVAAHPMEANQFAIGLSDGS VKVMESTESEGKWGVSPPVDNGVLNGRTTSSSTTSNHTPDQLQR" CDS join(39656957..39657036,39657692..39657871, 39657990..39658103,39658411..39658569,39658673..39658847, 39658965..39659094,39659511..39659626,39659743..39659878, 39659957..39660066,39660210..39660279,39660352..39660425, 39660510..39660605,39660683..39660778,39661271..39661398, 39661584..39661818,39661908..39662075,39662159..39662245, 39662581..39662733,39662813..39662923,39663027..39663209, 39663276..39663404,39663511..39663606,39663884..39664066, 39664152..39664330,39664408..39664495) /locus_tag="TCM_026702" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30128.m008872; paralog of Thecc1EG021273t1" /codon_start=1 /product="TOPLESS-related 3 isoform 3" /protein_id="EOY11568.1" /db_xref="TAIR:AT5G27030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q84JM4" /translation="MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEK VQAGEWEEVEKYLAGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILVSDLK VFSTFNEELYKEITQLLTLNNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDK LAFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHTCAPPNGPLAPTPVNL PVAAVAKPAAYTSLGAHSPFPPTAAAANAGALAGWMANASASSSVQAAVVTASSIPVP QNQVSVLKRPRTPPAAPGVVEYQNPDHEHLMKRLRPAQSVEEVTYPTPLRPQAWSLDD LPRTVALTMHQGSTVTSMDFCPSQQTLLLVGSTNGEITLWELGMRERLATKPFKIWEM STCSMTFQALMVNDATISVSRVTWSPDGSFVGVAFSKHLIHLYAYPGPNDLIPRLEID AHVGGVNDLAFAHPNKQLCIVTCGDDKLIKVWDSMTGQKVFNFEGHDAPVYSICPHHK ENIQFIFSTAVDGKIKAWLYDNMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGE SFLVEWNESEGAIKRTYVGFRKKSAGVVSFDTTQNHFLAAGEDSQIKFWDMDNINLLT FTDAEGGLPSLPRVRFNKEGNLLAVTTADNGFKILANAVGLRSLRATETSSFDPLRTP IVSAAIKASGSSAVTNAGPVSCKVERSSPVRPSPILNGVDPLGRSVEKARVVDDVIEK TKPWQLAEIVDPIQCRLVTLPDSTDTSSKVVRLLYTNSGVGILALGSNGVQKLWKWPR NEQNPSGKATANVVPQHWQPNSGLLMTNDVSGVNLEEAVPCIALSKNDSYVMSATGGK VSLFNMMTFKVVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSK LRGHQKRITGLAFSTSLNILVSSGADAHLCVWSIDTWEKRKSVLIQIPAGKAPTGDTR VQFHSDQIRMLVVHETQLAIYDASKMERVRQQWVPQDVLPAPISYAAYSCNSQSVYAT FCDGNVGVFDADSLRLRCRISSSVYLSQAILKGKPSCIPTCGGCTSDGGKPICNRVER WIC" CDS join(39656957..39657036,39657692..39657871, 39657990..39658103,39658411..39658569,39658673..39658847, 39658965..39659094,39659511..39659626,39659743..39659878, 39659957..39660066,39660210..39660279,39660352..39660425, 39660510..39660605,39660683..39660778,39661271..39661398, 39661584..39661818,39661908..39662075,39662159..39662245, 39662581..39662733,39662813..39662923,39663097..39663129) /locus_tag="TCM_026702" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30128.m008872; paralog of Thecc1EG021273t1" /codon_start=1 /product="TOPLESS-related 3 isoform 2" /protein_id="EOY11567.1" /db_xref="TAIR:AT5G27030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q84JM4" /translation="MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEK VQAGEWEEVEKYLAGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILVSDLK VFSTFNEELYKEITQLLTLNNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDK LAFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHTCAPPNGPLAPTPVNL PVAAVAKPAAYTSLGAHSPFPPTAAAANAGALAGWMANASASSSVQAAVVTASSIPVP QNQVSVLKRPRTPPAAPGVVEYQNPDHEHLMKRLRPAQSVEEVTYPTPLRPQAWSLDD LPRTVALTMHQGSTVTSMDFCPSQQTLLLVGSTNGEITLWELGMRERLATKPFKIWEM STCSMTFQALMVNDATISVSRVTWSPDGSFVGVAFSKHLIHLYAYPGPNDLIPRLEID AHVGGVNDLAFAHPNKQLCIVTCGDDKLIKVWDSMTGQKVFNFEGHDAPVYSICPHHK ENIQFIFSTAVDGKIKAWLYDNMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGE SFLVEWNESEGAIKRTYVGFRKKSAGVVSFDTTQNHFLAAGEDSQIKFWDMDNINLLT FTDAEGGLPSLPRVRFNKEGNLLAVTTADNGFKILANAVGLRSLRATETSSFDPLRTP IVSAAIKASGSSAVTNAGPVSCKVERSSPVRPSPILNGVDPLGRSVEKARVVDDVIEK TKPWQLAEIVDPIQCRLVTLPDSTDTSSKVVRLLYTNSGVGILALGSNGVQKLWKWPR NEQNPSGKVSTWKRLYHA" gene 39665800..39675934 /locus_tag="TCM_026703" /note="dbxref CacaoGD:Thecc1EG026703" mRNA join(39665800..39668362,39669472..39669648, 39670165..39670273,39670344..39670453,39670603..39670672, 39670748..39670821,39670906..39671001,39671084..39671179, 39671638..39671765,39671951..39672185,39672275..39672442, 39672531..39672617,39672875..39673111,39673191..39673301, 39673410..39673589,39673658..39673786,39673893..39673988, 39674388..39674570,39674660..39674835,39675114..39675311, 39675765..39675934) /locus_tag="TCM_026703" /product="Transducin family protein / WD-40 repeat family protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026702t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.22 coverage" CDS join(39665861..39668362,39669472..39669648, 39670165..39670273,39670344..39670453,39670603..39670672, 39670748..39670821,39670906..39671001,39671084..39671179, 39671638..39671765,39671951..39672185,39672275..39672442, 39672531..39672617,39672875..39673111,39673191..39673301, 39673410..39673589,39673658..39673786,39673893..39673988, 39674388..39674570,39674660..39674835,39675114..39675311, 39675765..39675888) /locus_tag="TCM_026703" /note="paralog of Thecc1EG026702t1" /codon_start=1 /product="Transducin family protein / WD-40 repeat family protein" /protein_id="EOY11569.1" /db_xref="TAIR:AT5G27030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q84JM4" /translation="MDPVITGAAANVASEAAKGIFHEVKRHMRYVFICKKNVDKFEEK LKSLIAKRTSVQQEVDAANRNGEKIKADVEHWRKTVDKVINEEDKRVKDLEEKAKNNC FIGLCPNLKSRYQLSRTAEDGAATVDDLIGQCQFNGVGYLDVPQAIVDASPNGFETFK SREKVFNDIMEAMKDASISMIGVYGMPGVGKTSLVNEVATQVQEVKLFDSVVTVTVAQ TPDIQKIQENIAELLGLRLDDKSTDVRARRLHERLKKEKTVLVVLDDIWKRLDLREVG IPFGSQHKGCKILLTSRDQNVLSNEMDADKTFAIDNLDDEEAWDLFKKMAGDSVESSE LRSTAIEVAKKCARLPLAIATVARALRNKDFFAWKDALQQLQKPSSRNFTGKFAAVYL AIELSYSHLENEELKWVFLLCSLVRRNASVDDLLKYAIGLGFIEGVDTVEEARNRLLT MVSDLKASCLLLDSNTNDLSFDVHDLVYDVAISIASKDKHAYALNEKGVLKDRFDEEK MKKCKMIHLGFLGSRELPDELNCPHLVYFRVSQNLPPNFFRKTTSLKVLHVTDTYFSL PRSICLLKSLLTLCLDGCPLRDITIIGELSNLEILSFRRSDIKILPKEIGQLVKLKLL DLNFCFKLAIISPGVLSSLLILEELYMVNSSIEWEVEGHANHRSNASLAELKNLSRLT ALEVKILDVTAMSGGLFFEELQKLERYKILVGVEDSMLFEAYECGYECEYESEHEYSR VLVLALSRTTYHLDNGIKMLLKKTEALYLVGDPCKDNLMIKYIFNDNGAADKIEFAEL RCLSFRKLPHLISFCSEDKSASTSMPQHELPLFSERVLHVRCCLNLKCFPASLARSDL PQLRDLQIVGCGGKEIVSEKQGLETAVTLAFTFEFDQQASSSDDLPTTEALTMHQGST VTTMDFHPLHHTLLLVGSVIGEITLWELGMRDKLVTKPFKIWEMSTCTTTFKALMVND TPISVSRVTWSPDGSLVGVAFSKHLIHLYTYHGSNDLIQHLEIDAHVGGVNDLAFAHI NKRLCIVTCGDDKLIKAWDSMTGLQWYNFEGHDAPVYSICPHQIENIPSIFSTAVDGN MKAWLYDNMGSRIDYDTEGPRCTTMLYSADGSRLFFCETSKAGQSVLVEWNESKGAIH KIYEGFRKKSTGVVSFDTTQNHFLVAGEDSLIKFWKIEHDYPLSVIDAEGGLPSLPRV RFSKEGNLLAVTTADNGFKILANAVGLRCLRAIETSSFDPLRTPIVSAAIKASGSSTV TNDGPVSCKVERSSPVRPSPILTIVFSSVFHAYDVFLAIDFIVIAWFFPKNGVDPLGR SVEKPRVADDAIEKTKPWKLAEIVYPIQCRLVTLPDNTDTSSKVVRLLYTNSGVGILA LGSDGVRKLWKWLRDEENPSGKATANVVPQHWQPNSGLLMTNDVSGVKLEIAVPCIAL SKDDSYVMSATGGKVSLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTI LVYNVLVDEVKSELRGHQKRITGLAFSTSLNILVSSGADAHLFVWSIDTWEKRKSVAI QIPAGKVPTGDTRVQFHSDQIRLLVVRETQLVIYDASKMERIRQWVPQDALPAPISYA AYSCNSQSVYATFRDGNVGVFDADSLILRCRISSSVYLSQAILKGNQVVYPLVVAAHP MEANQFAIGLSDGSVKVMEPTESEGKWGVSAPVDGSTTSLSTTSNHTTVQLLWEHEKL SKYPDTITARSQVLIELKKLIEANPVFRSELAKLL" mobile_element 39666605..39666662 /note="source:scaffold_4_CACTA_0505 12670 12724" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(39676571..39676627) /note="source:CACAO_Helitron_E81_scaffold_3 2494 2556" /mobile_element_type="transposon:Helitron" mobile_element 39678122..39678179 /note="source:scaffold_4_CACTA_0505 12670 12724" /mobile_element_type="transposon:TIR/CACTA" gene 39683629..39688424 /locus_tag="TCM_026706" /note="dbxref CacaoGD:Thecc1EG026706" mRNA join(39683629..39683955,39684038..39684147, 39684297..39684366,39684441..39684514,39684602..39684697, 39685326..39685453,39685638..39685872,39685962..39686180, 39686260..39686370,39686482..39686661,39686729..39686857, 39686965..39687060,39687266..39687508,39687598..39687773, 39687925..39688424) /locus_tag="TCM_026706" /product="TOPLESS-related 3" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026702t1" /inference="similar to AA sequence:Phytozome:Glyma19g41840.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.40 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12068t1" CDS join(39683892..39683955,39684038..39684147, 39684297..39684366,39684441..39684514,39684602..39684697, 39685326..39685453,39685638..39685872,39685962..39686180, 39686260..39686370,39686482..39686661,39686729..39686857, 39686965..39687060,39687266..39687508,39687598..39687773, 39687925..39688141) /locus_tag="TCM_026706" /note="paralog of Thecc1EG026702t1" /codon_start=1 /product="TOPLESS-related 3" /protein_id="EOY11570.1" /db_xref="Phytozome:Glyma19g41840.1" /db_xref="TAIR:AT5G27030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q84JM4" /translation="MHQGSTVTSMDFHPSQHTLLLVGSANAEITLWELGMRKRFITKS FKIWDMAACSMTFQGLMVNDTPISVKRVTWSPDGSFVGVSFSKHLIHLYAYPGSNDLI QHLEIDAHVGGVNDLAFAHPNKQLYIVTCGDDKLIKLIYSTAVDGTIILWLYNDLQFR ADFVALGHGSTTMLYSADGSRLFTCGTSKDGQSYLAEWYKSQRVVKRIYTGFGKKSAG VVSFDTTQNQFLAAGEDSQIKFWHMDNSKLLTFTDAEGGLPSLPRVRFNKEGNLLAVT IADNGFKILANDVGLRSLKVVDDAIEKTKPWQLAEIVDPLQCRLVNLPDSTDTSSKVV RLLYTNSGFGILALGSNGVQKLWKWPRNEQNPSGEATANVVPQHWQPNSGLLMTNDVS GVNLEEAVPCITLSKNDLYVMSATGGKVSLFNMMTFKVMATFLPPPPASTFLAFHPQN KNIIAIGMDDSSIYIYNVQVDKMKSKLRGHQKRITGLAFSTSLNILVSSGADAHSLAP TTGHAYYLLTSCCSLQLCVWSIFTWVKTKSVAMQMPAGKAPTGDTRVQFHSDGIRLLV VHETQLAIYNASKMERVRQWVSQDVLPAPISYATYSCNSQSVYATFCDGNVGVFDADS LRLICRIASSVHLSQAILKGKQVVYPFVVAAHPKEANQFAIGLSDGSVKVMEPTESEG KWQVSQPVDSGVVNGRMTSSSATSNHTPDQLER" mobile_element 39688472..39688528 /note="source:CACAO_M_S_E101631_F270_scaffold_9 11885 11939" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 39688490..39688536 /note="source:CACAO_M_E43428_F369_scaffold_5 1287 1334" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(39688494..39688540) /note="source:scaffold_6_CACTA_0703 4420 4466" /mobile_element_type="transposon:TIR/CACTA" mobile_element 39689663..39693228 /note="source:CACAO_M_E44260_F10_scaffold_5 1 3566" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(39693863..39693939) /note="source:CACAO_Helitron_E81_scaffold_3 2478 2560" /mobile_element_type="transposon:Helitron" gene 39694538..>39695508 /locus_tag="TCM_026708" /note="dbxref CacaoGD:Thecc1EG026708" mRNA 39694538..>39695508 /locus_tag="TCM_026708" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026718t1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12070t1; inference alignment:Newbler:10:TSA:cgbaL_g00888t00001" CDS 39694996..>39695508 /locus_tag="TCM_026708" /note="paralog of Thecc1EG026718t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11571.1" /translation="MESVGDVAANLSTEAAKGICEKGQQIMRYVKTYEQNIDNFKENL NSLTVKRKSVQQDVDVAERNGKKIKADVEHWCKTVDKVINEGMNEVRDLEDKAKKKCF FGLCPDFNSRYQCSMKAEEGAATVNDLIKQCQFNRVGYLDVPKAVVNASPNGFETFKS RKKVFNDIMEA" gene 39695735..39702846 /locus_tag="TCM_026710" /note="dbxref CacaoGD:Thecc1EG026710" mRNA join(39695735..39697482,39699121..39699459, 39700406..39700514,39700596..39700705,39700855..39700924, 39700998..39701071,39701158..39701253,39701336..39701428, 39701911..39702038,39702226..39702460,39702551..39702846) /locus_tag="TCM_026710" /product="NB-ARC domain-containing disease resistance protein" /inference="alignment:exonerate- protein:2:ricco:30074.m001382" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026703t1" /inference="similar to AA sequence:ricco:30128.m008872" /note="quality class is strong, express is medium, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.57 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12064t3" mobile_element 39695737..39695794 /note="source:scaffold_4_CACTA_0505 12670 12724" /mobile_element_type="transposon:TIR/CACTA" CDS join(39695896..39697482,39699121..39699459, 39700406..39700514,39700596..39700705,39700855..39700924, 39700998..39701071,39701158..39701253,39701336..39701428, 39701911..39702038,39702226..39702460,39702551..39702688) /locus_tag="TCM_026710" /note="dbxref ricco:30128.m008872; paralog of Thecc1EG026703t1" /codon_start=1 /product="NB-ARC domain-containing disease resistance protein" /protein_id="EOY11572.1" /db_xref="TAIR:AT3G16830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LRZ0" /translation="MKAEKTFAIDVLDNEEAWNLFRKMAGNSVERAELRSIAIEVAKK CARLPLAIATVANALSNKPSYVWKDALLQLQKPSSRNLSRKFADAYLAIELSYKHLES EEHKQTFLLCSLLRRDGSIDDLLKYAIGLGLINGVDTVEEVRSRLLTMVRDLKASCLL LDGNTNKLPFDMHDLVYDVAMSIASKDNHVFALNKKDVLKDWPDEETMKKCNMINLGF PGIKELPDELNCPQLIFFYMISKDGSLKMPPNFFRQTTNLKVLDLTEMHFSSLPPSIC LLTSLRTLCLDHCELGDITIIGELKNLEILSLFRSNFRILPKEIGRLVKLKLLDLSYC TELKIIPPGVLPSLSILEELYMLGTFIQWEVREHANQRSNASLVELKNLSCLTALEVH ILDAGAMPGGLFFEELQKLERYKIVIGNHDEDEFYQDVHEYSRILILNTISIDHLDHR LDMFWKKIEALRVYKDFDIENDSVTKYIINDNDAVDKIEFPQLRSLVFQDLPHLISFC SKDKSASTSMPRHELSLFSEKNVFPASVARVLPQLRDLCIHDCGVEEIVSIGEGLETT VTFEFNQVSFLSLWKLPELKCFYPGVHTIKWPMLKEFYTFGCGKTTILGTKHFSIVDT PNVNWQQLQSQLISLDEKQAWSLDDIPTTVVLTMHQGSTVKSIDFHPSHHTLLLVGSA NGEITLWELGMRERLVTKPFKIWEMSTCSLTFQALMVNDTSISVSRVTWSPDGSLAGV AFSKHLTHLYAYPGSNDLIQSLEIDAHVGGVNDLAFTHINKRLCIVTCGDDKLLKVWD SMTGRKLFNFEGHDAPVYSICPVDRYERLIYSITVDGTITSWMYDGRRCQADLVAPGQ GCSTMLVSANRMRLFTCGTSKDGQSFLAEWCQYQQVVERIYEGFTMKSAAVVSFDIGQ NQFLAAGEDSQIKFWHVDNSNLLTFIDAEGGLPSLPRVRFNKPGNLLAVTTADNGFKI LANDVGLRSLRANEVSSSAA" gene 39704813..39708560 /locus_tag="TCM_026711" /note="dbxref CacaoGD:Thecc1EG026711" mRNA join(39704813..39705227,39705302..39705400, 39705548..39705799,39706070..39706311,39706448..39706538, 39706606..39706663,39706749..39707000,39707106..39707207, 39707331..39707438,39707738..39707846,39707929..39708038, 39708188..39708253,39708331..39708560) /locus_tag="TCM_026711" /product="Uncharacterized protein" /inference="similar to AA sequence:Phytozome:POPTR_0005s04430.1" /note="quality class is weak, express is none, homology is paralog weak, intron is weak, protein is complete; weak similarity to TOPLESS-related 3" CDS join(39704836..39705227,39705302..39705400, 39705548..39705799,39706070..39706311,39706448..39706538, 39706606..39706663,39706749..39707000,39707106..39707207, 39707331..39707438,39707738..39707846,39707929..39708038, 39708188..39708253,39708331..39708354) /locus_tag="TCM_026711" /note="weak similarity to TOPLESS-related 3" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11573.1" /db_xref="Phytozome:POPTR_0005s04430.1" /db_xref="TAIR:AT5G27030.1" /translation="MVLVVLDDIWKRLDLKEVGIPFGNQHKECKILLPSRDQNVLSNG MDADKTFAIDNLDDEEAWDLFRKMARDSVESAELQSTAIEVAKECARLPLAIATIARS LRKVYLLGRMFYDHYRSLPQETSLGYPQILVRRDANIVDLMKYAIGLGLIKGVDSLEK ARNRADVLKNWPEEEIVKKCKKIHLGFPGITELPDELNCPQLVYFRVFSKFGKNDNND SLKMPPNFFKETTNLKVLHLRNMQFSSLPSEVEGHASHRTNASLAELKNLSRLTALEV HILDVEATSGGLFFEALQKLERYKIFLENDNRELFDEYECTREHSRTLLLDSSLYWIT LTFALKTRAALPQCLNMSCLFSVKRFSSYDQPLFSNVKLYGTIMVLLPSLENLQFYSI NVERIWHCYQISICNHENLRTLIISCCDDLKHLLTFFMDRRLVHLKYLEIRICNSLRD RISAEDIEEENKSLKIDNCPELKGFIYKSTLEGSQCFSSQTLFDEKVAFPSLEEIFIS SLSSMKMIWQNQLPTNSFPKLQRMKAWSWDDLPRRVALTMHQGSMVTSMDFHPSLHTL LLVGSVNGEITLWELGMLDKLVTKPFKIWDMTACSMTFQALMLNGTPISANRVTWNPD GSLGLHFPNT" mobile_element 39710043..39710166 /note="source:scaffold_5_CACTA_0580 5412 5532" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(39710174..39710847) /note="source:scaffold_7_CACTA_0789 1858 2540" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(39710847..39710922) /note="source:scaffold_1_CACTA_0029 7156 7230" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(39710848..39710933) /note="source:CACAO_M_E69780_F2_scaffold_9 1569 1652" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(39712660..39713926) /note="source:scaffold_5_CACTA_0614 1494 2651" /mobile_element_type="transposon:TIR/CACTA" mobile_element 39714523..39714852 /note="source:CACAO_M_S_E66710_F64_scaffold_5 1 330" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(39714894..39715783) /note="source:scaffold_5_CACTA_0607 5736 6665" /mobile_element_type="transposon:TIR/CACTA" mobile_element 39715784..39716297 /note="source:scaffold_5_CACTA_0615 1715 2253" /mobile_element_type="transposon:TIR/CACTA" mobile_element 39716327..39716366 /note="source:CACAO_Helitron_SS_E7_scaffold_1 579 617" /mobile_element_type="transposon:Helitron" gene 39717607..39726388 /locus_tag="TCM_026712" /note="dbxref CacaoGD:Thecc1EG026712" mRNA join(39717607..39720431,39721679..39721921, 39722003..39722128,39722249..39722989,39723865..39723973, 39724056..39724165,39724319..39724388,39724462..39724535, 39724624..39724719,39724802..39724914,39724992..39725076, 39725393..39725471,39725773..39725930,39726021..39726388) /locus_tag="TCM_026712" /product="NB-ARC domain-containing disease resistance protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Glyma07g08500.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026718t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s04290.1" /note="quality class is medium, express is weak, homology is paralog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.25 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00888t00001" CDS join(39717948..39720431,39721679..39721921, 39722003..39722128,39722249..39722989,39723865..39723973, 39724056..39724165,39724319..39724388,39724462..39724535, 39724624..39724719,39724802..39724914,39724992..39725076, 39725393..39725471,39725773..39725930,39726021..39726158) /locus_tag="TCM_026712" /note="paralog of Thecc1EG026718t1" /codon_start=1 /product="NB-ARC domain-containing disease resistance protein, putative" /protein_id="EOY11574.1" /db_xref="Phytozome:POPTR_0005s04290.1" /db_xref="TAIR:AT5G27030.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AWL3" /translation="MDPVITGAAANVSSEVAKGIFQEIKRHMRYVIISKQNVDKFEEK LKSLIAKRTSVQQEVDVADRNGEKIKADVEHWCNTVDKVINEEEKKVKDLEDKAKNKC FFGLCPNIKSRYQLSKKAEKGAVVVDNLIQECQFNGVGCLDVPKAIVDTSPNGFETFK SREKVFNDIMEAMKDATISMIGVYGMPGVGKTSLVKEVARQVQEARLFDSVVTVTVAQ TPDIQKIQENISELLGLRLEDKSTDVRARRLHERLKKEKTVLIVLDDIWKRLDFKEVG IAFGNQHKGCKILLTSRDQNVLSNEMDVEKRFAIDDLDDEEAWDLFRKMVGTDSVENA ELRPTAIEVAKKCARLPLAIVTVARALRNKSLFAWKDALRQLQKPSSSNFTGKFAAIY LAIELSYNHLENELKQAFLLCSLVRRDASTDDFLRYAIGLGLIKGDDTVEEARNKLLT MVSDLKASCLLVDSNTYDLYFDMHDLVYDVAMSIAFKDNHAFALKEVYKDWPHEETTK KCNKIYLRFPNIRELPEELNCPQLVFFHMFIYGYKKVPPNFFKETTNLKVLHLNGMQF SSSPSSIRLLTSLCALCLHQCKLGDIAIIGELNNLKILSFSRSDIKILPKEIGRLVKL SLLDLSYCTELKIISPDVLSNLSKLEELYMDGTLIQWEDGRDANHRSNASLAELKNLS HLTTLEVHITDVEATSGGLFFEGLQKLERYKIFIGNEWNWLLTYEDEYKYSRNVRLQS STFIDHLDHGIKMLLKKSVSYSFYQTEDDSVAKYPINDNDATNRADFSQLQLGSPQDD DSPKDISFCFEDKNVSTSMPQPELPLSSEKMGFPCLENLQLSSTNVEKIWHNASCNLE NLTTLTVWGCGYLKQFLSFSMARRLVHLIHLEIIECQCLREIISTEDVEEESKTIEFP SLESLRIRDCPELKGFIYKSTTEGSQHFSSQALFNDKVAFPSLEEIFISNLRSIKMIC QNQLSANSFHKLQRVEVKECPGLLTIFPSNTLRAFQGLQTLVVERCDLLEEVFEIERS NMEETRAATTQLKELLLEDLPNLKYIWKNDPQGIFTFENLQVLSVGWCLNLKNVFPAA AARVLQQLSYVDIHDCGLEEIVSKEDGLETAATFEFDQLSFFRLFNLPELKCFYPEVH TTKWPMLKVFQAFRCGNMKIVGTERFNIIETPNFNGQLESLLIHPQFFSTKKQPWSLD DLPTTVALTMHQGSTVTSMDFHPSNHTLLLVGSANGEITLWELGMRAKLVTKPFKIWE MSTCSMTFQALMVNDAPISVRRVTWSPDGSLVGVAFSKHLIHLYAYLGSNDLIQRLEI DAHIGGVNDLAFAHPFEALRIITCGDDKRIKVWDVMTGQKLFKFRVHDAPVYSICPMD SKQVEHKELMSISCLYFRLDCNNNQSLLLKDAITTNLLNFISTTVDGEIILQQYDMRF TCTNFTPGNFVGFTKKSAGVVSFDMAQNQFLAAGEDSQIKFWHTDHRYPLSFTDANGG LPSLPCVRFSKEGNLLAVTTADNGFKILANAVGLKSLGPNEASSSSA" mobile_element 39718692..39718749 /note="source:scaffold_4_CACTA_0505 12670 12724" /mobile_element_type="transposon:TIR/CACTA" mobile_element 39720825..39720883 /note="source:CACAO_Helitron_E116_scaffold_4 1 58" /mobile_element_type="transposon:Helitron" mobile_element 39721371..39721449 /note="source:CACAO_Helitron_E137_scaffold_4 143 223" /mobile_element_type="transposon:Helitron" mobile_element complement(39721378..39721477) /note="source:CACAO_Helitron_S_E53_scaffold_8 460 549" /mobile_element_type="transposon:Helitron" gene 39728626..39731001 /locus_tag="TCM_026715" /note="dbxref CacaoGD:Thecc1EG026715" mRNA join(39728626..39728748,39728831..39728940, 39729094..39729163,39729237..39729310,39729397..39729492, 39729575..39729687,39729765..39729849,39730166..39730287, 39730475..39730703,39730794..39731001) /locus_tag="TCM_026715" /product="TOPLESS-related 2, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026712t1" /inference="similar to AA sequence:Phytozome:Glyma19g41840.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.12 coverage" CDS join(39728685..39728748,39728831..39728940, 39729094..39729163,39729237..39729310,39729397..39729492, 39729575..39729687,39729765..39729849,39730166..39730287, 39730475..39730703,39730794..39730931) /locus_tag="TCM_026715" /note="paralog of Thecc1EG026712t1" /codon_start=1 /product="TOPLESS-related 2, putative" /protein_id="EOY11575.1" /db_xref="Phytozome:Glyma19g41840.1" /db_xref="TAIR:AT3G16830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LRZ0" /translation="MHQGSTVTSMDFHPSNHTLLLVGSANGEITLWELGMRAKLVTRP FKIWEMSTCSMTFQALMVNDAPISVSRVTWSPDGSLVGVAFSKHLIHLYAYLGSHDLI QRLEIDAHIGGVNDLAFAHPFEELRSITCGDDKRIKVWDVMTGQKLFKFRDHDAPVYS ICPMDSEQVEHKELMSISCLYFRLDCNNNQSLLLKDAITTNLLNFISTYVDGEVILWR YDMRFTSANFTPGHGCSTTIYNADGNRLFSCGTSKDGQSFLVEYSGILLKGNFVGFTK KSAGVVSFDMAQNQFFAAGEDSQIKFWHMDHRYPLSFTDAEGGLPSRPRVRFNKEGNL LAVTTADNGFKILANAVGLKSLGPNEASSSSA" mobile_element complement(39731850..39732294) /note="source:scaffold_5_CACTA_0614 1 456" /mobile_element_type="transposon:TIR/CACTA" gene 39734674..39736436 /locus_tag="TCM_026716" /note="dbxref CacaoGD:Thecc1EG026716" mRNA join(39734674..39734797,39734910..39735098, 39735492..39735730,39736004..39736436) /locus_tag="TCM_026716" /product="Uncharacterized protein" /note="quality class is strong, express is weak, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.19 coverage" CDS join(39735523..39735730,39736004..39736116) /locus_tag="TCM_026716" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11576.1" /translation="MNYFEEKVKAGEWEEAEKYLSGFTKLDDNLPPTAANASALAGWM ANASASSSVQAGVVTASSIPVPQNQVSVLNRPRTCPAAPGMVDYQDPDHEELMKRLRP APSV" mobile_element complement(39736651..39737047) /note="source:scaffold_2_CACTA_0244 14284 14704" /mobile_element_type="transposon:TIR/CACTA" gene 39737191..39739513 /locus_tag="TCM_026717" /note="dbxref CacaoGD:Thecc1EG026717" mRNA join(39737191..39737536,39738700..39738850, 39739018..39739513) /locus_tag="TCM_026717" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is paralog weak, intron is none, protein is complete" CDS join(39737252..39737536,39738700..39738850, 39739018..39739211) /locus_tag="TCM_026717" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11577.1" /translation="MGRSPGKATDVTKRRSGAPSGRIWPLRRQIDASPQLDLTVECQI QPWDLVGKHQIRCFRRQDLAFECQIWPLWRQIDASPRLDLAVECQIQPWDLVYAMIFS AYPFEQFRQRPRAPPTAPGMVDYQDPDHEQLRKRLGPAPSVCGGQQAWSLDELPRTVA LTMHEGSMVTSRAIEFPYHFCDYPYYDDKPFDGQPTKMLAVWRHEKPYF" mobile_element complement(39737292..39737462) /note="source:scaffold_2_CACTA_0244 13949 14120" /mobile_element_type="transposon:TIR/CACTA" gene 39739561..39748011 /locus_tag="TCM_026718" /note="dbxref CacaoGD:Thecc1EG026718" mRNA join(39739561..39742638,39743179..39743628, 39743749..39744480,39745517..39745625,39745707..39745831, 39745981..39746053,39746127..39746200,39746287..39746382, 39746465..39746560,39747044..39747171,39747356..39747590, 39747681..39748011) /locus_tag="TCM_026718" /product="NB-ARC domain-containing disease resistance protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400020244.5" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026712t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s04290.1" /note="quality class is strong, express is medium, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.35 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12092t1" CDS join(39740158..39742638,39743179..39743628, 39743749..39744480,39745517..39745625,39745707..39745831, 39745981..39746053,39746127..39746200,39746287..39746382, 39746465..39746560,39747044..39747171,39747356..39747590, 39747681..39747818) /locus_tag="TCM_026718" /note="paralog of Thecc1EG026712t1" /codon_start=1 /product="NB-ARC domain-containing disease resistance protein, putative" /protein_id="EOY11578.1" /db_xref="Phytozome:POPTR_0005s04290.1" /db_xref="TAIR:AT3G16830.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AWL3" /translation="MESVADVAANLSSEAAKGAFEEGQQFVRYVSTYEQNIDKFNEKL KSLTAKRKSVQQEVDDAERSGKKIKADVEHWCKRVDEEINEREKKVKDLEGKAKKKCF FGLCPNFNSRYQCSLTAEEGARTFDDLIKQSQFNKVGYLDVPEAIVDESPNGFETFKS REKVFNDIMEAMKDVTVSMIGVYGLPGVGKTLLVNEVARQVQEVKLFDSVVTVTVAQT PVIQKIQENIAELLSLRLKDNSINVRARRLHERLKKEKTVLIVLDDIWKRLDLKEVGI PFGNQHKGCKILLTSRDRDVLLDGMKAEKTFAIDVLDNEETWNLFKKMAGDSVERAEL RSIAIEVAKKCARLPLAIATVANALSNKPLYVWKDALLQLQKPCSRNLSRKFADAYLA IQLSYNHLENEELKQAFLLCSLLRRVGNIDDLLKYAIGLGLINGVDTMEEARSRLLTM VRDLKASCLLIDNNTGKLSFDMHDLVYDFAMSIASKDHHLFASHEEDVPKDWPNEETM KKCNMINLEFPSIRELPDELNCPQLVFCCMFGKDDSLEMPPNFFRQTTDLKVLGLTEK QVSSLPSSICLLTSLRTLCLDYCKLGDIAIIGELKNLEILSLLGSHFRILPKEIGRLV KLKLLDLRYCAALKIIPTGFFSTLSRLEELYMLGTFIQWEVREHANQRSSASLAELKN LSCLIALELNILDVEAMSRGLFFEEFQKLERYKILIGSYHADKCFLDAGEYSRTLILN ASSLDHLGHGLKMFLKKTEALRIYGDFNIKNDSMIRFIIRDNGAVEFPQLRSLIFQGL PDLIGFCCKDLIAFSFGPSRQLMPLISAQMLLPCLETLQLSSTNIERIWHNSCYNLEK LTTLIIKDCDNLTHLLSFSLARRLVHLKCFEVSRCKSLKEIISKEEFEKKSEVKTLFP KLASLSLENLQHLIRFCPKHQNIEFPSLKSLKIENCPKLKGFIYKSTSEGRRCFSCKA LFDEKVAFPSLEEIFISNLRSIEMIWQNQLSANSFLKLQRMQVIQCNNLLTIFSSNTL RAFQGLQTLQVYRCDLVEEVFEIERSNMEETRAATTHLKELVLGHLPSLKYIWKNDPQ GIFTFENLQVIDVRWCLNLKNVFPASVAKVLPQLRCLSIHDCGVEEIVSMEEGLETTV TFEFNQVSFLSLWKLLELKCFYAGVHTTKWPMLKEFNVYGCGKTKILGTKHFSIVDTP NVNRQQLESQLISLDGKQAWSLDDLPTTVVLTMHQGSMVTSMDFHPLRHTLLLVGSAN GEITLWELGMRQRLVTKPFKIWKVSTWGVTVGSIKFQVMTMFGDILLSVNRVTWSPDG SFVGVAFSEHLIHLYAYPGSNDLIQIIQIDAHVGGVNDLAFAHINKRLCVVTCGDDDL IKVWDPMTGQKLFNFEGHDAPVYSICPYQKQNIPLIYSTTVDGTITSSMYDGMQYKAD FFAPGQGCSTILLSANSTRLFSCGTSKDGRSFLVEWYRNERIVKRIYEGFTKKSAGVV SFDIVQNQFLAAGEDSQIKFWNMDDSNLLTFIDAEGGLPSLPRVRFNKEGNLLAVTTA DDGFKILANAVGLRSLRANEASSSSA" mobile_element 39744548..39744673 /note="source:scaffold_1_CACTA_0023 6331 6458" /mobile_element_type="transposon:TIR/CACTA" mobile_element 39747956..39748004 /note="source:CACAO_M_S_E4413_F3_scaffold_1 3007 3056" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(39748005..39748018) /note="source:INTACT495_F229_scaffold_2-int 2817 2883" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(39748022..39757438) /locus_tag="TCM_026719" /note="dbxref CacaoGD:Thecc1EG026719" mRNA complement(join(39748022..39748209,39749230..39750249, 39756995..39757438)) /locus_tag="TCM_026719" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026721t1" /note="quality class is medium, express is weak, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.10 coverage" CDS complement(join(39749230..39750249,39756995..39757015)) /locus_tag="TCM_026719" /note="paralog of Thecc1EG026721t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11579.1" /translation="MLVHIERMTGTNHENTKLLVPPKHSSSYNLHITIYIPKVPIPKL LPKGLLKFVKFVNFVPRRNHVRSGDDENGSKSQKKHGAKSRKSFRKKVGGMFSNVFGN KKSSPETDSRSSSGENGEVYWNGDWDQMENSKKIVERSVGMGSAKITRKKSSANDLNG GVQQMVVATGLGISKSRMFKEMLEDEDKEEEKVKQEMLEDEHKEEERVEQQDKEEERV EQQVTVTKFLSKRTNYGLQLTKAEINKAGVGDNAGLSIIVRDANTVETRRTVMGKQEK KSNELPMGISRTTPTTRRKLKIAWSMKKMMGGETKKQELCKKRILMGMRCRPIATIQY DENGVLLPEIIP" mobile_element complement(39754520..39754602) /note="source:scaffold_4_CACTA_0483 15119 15191" /mobile_element_type="transposon:TIR/CACTA" mobile_element complement(39756833..39756946) /note="source:INTACT289_F14_scaffold_4-int 1335 1426" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 39756850..39756927 /note="source:CACAO_M_S_E52027_F3_scaffold_5 3868 3922" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 39756868..39756956 /note="source:CACAO_M_E14113_F106_scaffold_3 13809 13904" /mobile_element_type="retrotransposon:LTR/Copia" gene 39757533..39761454 /locus_tag="TCM_026720" /note="dbxref CacaoGD:Thecc1EG026720" mRNA join(39757533..39757593,39759823..39759906, 39760004..39760110,39760251..39760375,39760495..39760558, 39761078..39761454) /locus_tag="TCM_026720" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.21 coverage" mobile_element complement(39757609..39758301) /note="source:scaffold_4_CACTA_0482 16796 17490" /mobile_element_type="transposon:TIR/CACTA" CDS join(39759840..39759906,39760004..39760110, 39760251..39760375,39760495..39760558,39761078..39761140) /locus_tag="TCM_026720" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11580.1" /translation="MHFVLICHGSDMMISLLFWNLLGDDACVFRLRLSGGSACLPGIE VKRKLMFNGLRGAEGDTNSKQVRCFPCIFMEHVMAGSSNPALVIQTATRVGSILLNDA MPYANQNLSVLSSARTPDIWVPQDVLPAPLSYAAYFCNN" gene complement(39760870..39762679) /locus_tag="TCM_026721" /note="dbxref CacaoGD:Thecc1EG026721" mRNA complement(join(39760870..39761308,39761668..39762679)) /locus_tag="TCM_026721" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026719t1" /note="quality class is medium, express is none, homology is paralog medium, intron is none, protein is complete" CDS complement(join(39761146..39761308,39761668..39762449)) /locus_tag="TCM_026721" /note="paralog of Thecc1EG026719t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11581.1" /translation="MTVTNHDNTRPFVPPNSQSFYHISITFNFWIPKIKRRNNVRGVD DENGSKSKKKHVPKSRESFRKTVGVMFSNVFGNKKLSPETGSGSSNGNGKVHWDGDWD QMENWKKFVERSVGMESAKTREKGSENHLYGGVRPTVVATGLGISNSRMFKELLEDED KAERRGKQQDRVSKFFSKLINDLEMKKGETTKADDGVGDRGAKTVARKKGKVMGKQEK KSRPKLKIAWSMKKMMGGKSEKQELCKKRILMGGRCRPLGTIQFEWYKKTESRQINGL IVDPFKIAWDKYIDEEIRHLSLRLAASNTPTLPSQKVA" mobile_element 39763051..39763474 /note="source:CACAO_MITE_S71_scaffold_3 1 418" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(39763926..39763971) /note="source:CACAO_PIF_E119_scaffold_3 2231 2276" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(39763966..39764444) /note="source:scaffold_8_CACTA_0855 2061 2541" /mobile_element_type="transposon:TIR/CACTA" gene 39764885..39771998 /locus_tag="TCM_026722" /note="dbxref CacaoGD:Thecc1EG026722" mRNA join(39764885..39765105,39765557..39765638, 39765849..39766330,39766906..39767121,39767231..39767599, 39767680..39767709,39768205..39768432,39768541..39768702, 39768823..39769044,39769160..39769366,39769442..39769648, 39769960..39770040,39770179..39770380,39770792..39771998) /locus_tag="TCM_026722" /product="Eukaryotic translation initiation factor 3 subunit A" /inference="alignment:exonerate- protein:2:ricco:30128.m008874.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001471t1" /inference="similar to AA sequence:ricco:30128.m008874" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04136t00001" CDS join(39765593..39765638,39765849..39766330, 39766906..39767121,39767231..39767599,39767680..39767709, 39768205..39768432,39768541..39768702,39768823..39769044, 39769160..39769366,39769442..39769648,39769960..39770040, 39770179..39770380,39770792..39771282) /locus_tag="TCM_026722" /note="dbxref ricco:30128.m008874; paralog of Thecc1EG001471t1" /codon_start=1 /product="Eukaryotic translation initiation factor 3 subunit A" /protein_id="EOY11582.1" /db_xref="TAIR:AT4G11420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LD55" /translation="MANFAKPENALKRAEELINVGQKQDALQALHNLITSKRYRAWQK PLERIMFKYVELCVDMRKGRFAKDGLIQYRIVCQQVNVSSLEEVIKHFMHLSTEKAEK ARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRT VLEILRNNSKLEALYAMTAHRAFQFCKQYKRSTEFRRLCEIIRNHLANLNKYKDQRDR PDLSAPESLQLYLDTRVEQLKIATELGLWQEAFRSVEDIHGLMSIVKKTPKASLMVVY YAKLTEIFWISASHLYHAYAWLKLFTLQKSFNKNLSQKDLQLIASAVVLAALSVSPYD QTSAASHLELENEKERNLRMANLIGFNLEPKLENREVLSRSSLLTELVSKGVLSCATQ EVKDLYHILEHEFLPLDVASKIQPLLIKISKLGGKLASASSVPEVQLSQYVPALEKLA TLRLLQQVSQVYQTMKIESLSQMIPFFDFSLVEKVSVDAIKHNFIAMKVDYMKGVVQF GTMGLESDKLRDHLTILAESLNKARAMIYPSAKKASKLGEVLPGLGEIVDKEHKRLLA RKSIIEKRKEEQERQLLEMEREEESKRQMLQKKTEEAEKKRLAAMFEQQRAERIRKEI EERELEEAQALLHETEKHLKRGKKKPILDGEKLTKQTLLERAMNEQLKERQEQEKRLQ KVAKTMDHLERAKREEAAPLIEAAFQQRLVEEKVLHEHEQQLEVELSRQHHDGDLREK NRLARMLGNKMIFQERVMSRRQAEFDQRREEREERIQQIIQARKQERDIKRKKIFYVR SEEERIRKLHEEEEARKLEEAERRRKEEAEHKAKMDEIAEKQRQRERELEEKERQRRE ALLGRSTDGLSRPSELPAGSRATEPGVAAPAAAPTAGKYVPRFLRERTESSGPAPPSE PDRWVKPTPSESDRWTGGSRAPQPLSDRWTSGSRAPPQDSDRLGGPGGSSRPEPWRPS RARNPQRG" gene 39772048..39774384 /locus_tag="TCM_026723" /note="dbxref CacaoGD:Thecc1EG026723" mRNA join(39772048..39772196,39772525..39772709, 39773003..39773211,39773311..39773411,39773699..39773758, 39774036..39774280) /locus_tag="TCM_026723" /product="Mitochondrially targeted single-stranded DNA binding protein isoform 1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010821t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s01320.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g15247t1" mRNA join(39772057..39772196,39772519..39772709, 39773003..39773211,39773311..39773411,39773699..39773758, 39774036..39774384) /locus_tag="TCM_026723" /product="Mitochondrially targeted single-stranded DNA binding protein isoform 2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010821t1" /inference="similar to AA sequence:ricco:30071.m000434" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00811t00001; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g15247t1" CDS join(39772124..39772196,39772519..39772709, 39773003..39773211,39773311..39773411,39773699..39773758, 39774036..39774052) /locus_tag="TCM_026723" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30071.m000434; paralog of Thecc1EG010821t1" /codon_start=1 /product="Mitochondrially targeted single-stranded DNA binding protein isoform 2" /protein_id="EOY11584.1" /db_xref="TAIR:AT4G11060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q84J78" /translation="MSSLASRCAKLLRISVPTAPNSSLVAGVQRTSKLWCSTGSVGSE NDEGKGNEMEEEIDDFLGDKSDKREPMLQGVNPASGWNYRGVHRAIICGKVGQAPIQK ILRNGRTVTIFTVGTGGMYDQRIIRDQNTPQPAQWHRIAVHNDALGAYAVQQITKNSS VYVEGDIETRVYNDSINGEVKYIPEICIRRDGRIRLIKTGEGVSNISFDDLREGLL" CDS join(39772124..39772196,39772525..39772709, 39773003..39773211,39773311..39773411,39773699..39773758, 39774036..39774052) /locus_tag="TCM_026723" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG010821t1" /codon_start=1 /product="Mitochondrially targeted single-stranded DNA binding protein isoform 1" /protein_id="EOY11583.1" /db_xref="Phytozome:POPTR_0013s01320.1" /db_xref="TAIR:AT4G11060.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q84J78" /translation="MSSLASRCAKLLRISVPTAPNSSLGVQRTSKLWCSTGSVGSEND EGKGNEMEEEIDDFLGDKSDKREPMLQGVNPASGWNYRGVHRAIICGKVGQAPIQKIL RNGRTVTIFTVGTGGMYDQRIIRDQNTPQPAQWHRIAVHNDALGAYAVQQITKNSSVY VEGDIETRVYNDSINGEVKYIPEICIRRDGRIRLIKTGEGVSNISFDDLREGLL" gene 39776342..39777210 /locus_tag="TCM_026724" /note="dbxref CacaoGD:Thecc1EG026724" mRNA 39776342..39777210 /locus_tag="TCM_026724" /product="Wall-associated receptor kinase-like 20" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s02120.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021867t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s02120.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2236t1" CDS 39776385..39777002 /locus_tag="TCM_026724" /note="paralog of Thecc1EG021867t1" /codon_start=1 /product="Wall-associated receptor kinase-like 20" /protein_id="EOY11585.1" /db_xref="Phytozome:POPTR_0005s02120.1" /db_xref="TAIR:AT5G02070.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I7A0" /translation="MVPAVIVFLFVLVTQVSAFRFCPKCGKMEVPYPLSTDENCGDPR YRIYCNNGVLEFMSAQGFYYNILSINPWSSKLVISPPLIQENTCYSSDLGVGGLVLDE NLPFNISTRNTVMLFNCSDSILLSPLNCSSSSFCRQFEDAGKGGSGCRGTLCCHFLKD ASMTSHRIRVRLGGCTAYTSVVGKKPNDPIDTWNYGIELQWLPPF" gene complement(39777100..39781802) /locus_tag="TCM_026725" /note="dbxref CacaoGD:Thecc1EG026725" mRNA complement(join(39777100..39778272,39778728..39778960, 39779047..39779172,39779264..39779371,39779516..39779733, 39779823..39779994,39780500..39780753,39781474..39781545, 39781650..39781802)) /locus_tag="TCM_026725" /product="Phosphatase 2C family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031195001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG009561t1" /inference="similar to AA sequence:Phytozome:GSVIVT01031195001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g15253t3" CDS complement(join(39778053..39778272,39778728..39778960, 39779047..39779172,39779264..39779371,39779516..39779733, 39779823..39779994,39780500..39780709)) /locus_tag="TCM_026725" /note="paralog of Thecc1EG009561t1" /codon_start=1 /product="Phosphatase 2C family protein" /protein_id="EOY11586.1" /db_xref="Phytozome:GSVIVT01031195001" /db_xref="TAIR:AT1G09160.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80492" /translation="MSQAEVSRMKPPLVPLATLIGRELRNEKVEKPFVKFGQAALAKK GEDYFLVKPDCQRVPGNPATTFSVFAIFDGHNGISAAIFAKENLLSNVLSAIPQGISR EEWLQALPRALVAGFVKTDIEFQQRGETSGTTVTFVVIDGWTVTVASVGDSRCILDTQ GGVVSLLTVDHRLEENAEERERVTASGGEVGRLNVFGGNEVGPLRCWPGGLCLSRSIG DTDVGEFIVPIPHVKQVKLSNAGGRLIIASDGIWDALSSAVAAKSCRGLPADLAAKLV VKEALRSRGLKDDTTCLVVDIIPCDHPVLPPTPRKKQNVFSSLLFGKRSQNSTNKTTN KLSVVGVVEELFEEGSAMLAERLGKDFPMNTNSGIFKCAVCQVDQPPSEGLTVNSGPF FSPASKPWEGPFLCTNCRKKKDAMEGKRPSRPTVTT" mobile_element 39783584..39783642 /note="source:CACAO_M_S_E66514_F257_scaffold_5 2379 2436" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(39783625..39790449) /locus_tag="TCM_026726" /note="dbxref CacaoGD:Thecc1EG026726" mRNA complement(join(39783625..39784117,39784233..39784747, 39785045..39785209,39785298..39785461,39785550..39785803, 39785904..39786060,39786175..39786340,39786451..39786557, 39786659..39786835,39786924..39787019,39787107..39787188, 39787276..39787437,39787525..39787602,39788145..39788213, 39788387..39788557,39788658..39788903,39788969..39789112, 39789203..39789369,39789907..39790449)) /locus_tag="TCM_026726" /product="Kinesin heavy chain, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031197001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004734t2" /inference="similar to AA sequence:Phytozome:POPTR_0013s01280.1" /note="quality class is medium, express is medium, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.39 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc2098t1" CDS complement(join(39784012..39784117,39784233..39784747, 39785045..39785209,39785298..39785461,39785550..39785803, 39785904..39786060,39786175..39786340,39786451..39786557, 39786659..39786835,39786924..39787019,39787107..39787188, 39787276..39787437,39787525..39787602,39788145..39788213, 39788387..39788557,39788658..39788903,39788969..39789112, 39789203..39789369,39789907..39790024)) /locus_tag="TCM_026726" /note="paralog of Thecc1EG004734t2" /codon_start=1 /product="Kinesin heavy chain, putative" /protein_id="EOY11587.1" /db_xref="Phytozome:POPTR_0013s01280.1" /db_xref="TAIR:AT5G27000.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RFF9" /translation="MATESNLQFSVISVLEEVLQQQGTPISDINLASRKIEESSLRRY EAAGWLRKKVGVVGGKDLPAEPSEEEFRLGLRSGIILCNVLNKVQPGAVPKVVEGACD SVIIPDGAALSAFQYFENVRNFLVAIEEMGIPTFEASDLEQGGKSSRIVNCVLALKSY SEWKQSGGIGSWKYSANGKPSNFGTGKPFVRKSSEPFTNSMSRTMSLGEKSVESLCSD QSDLSEAGSVRSLHMLVRAALSDKKQEEIPTVRSFCSYKNISNSDFSQDGIRNLFAAK YANLLPIVESMFNKVLEEFERRLASQNELTKTTTKDMEESVPDNLLSRTASSDDKVEV EAPAEEMIEDESSAESEKNELYDGKCNADEESIRHLLKQQTLFEQQQEDILELKHRLH ATKASMQFLQRMCQEEFVNLGKHLHTLAYAASGYQRVLEENRKLYNQVQDLKGNIRVY CRVRPFLNGQSNSLSSVDNIDDSTIAIITPSKYGKEGRKSFTFNKIFSPSVTQAEVFS DTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPKELTEEELGVNYRALSDLFLLSNQ RKETISYDISVQMLEIYNEQVRDLLSADEIRNSSQNGINVPDASLVPVSSTFDVINLM NLGQKNRAVSATAMNDRSSRSHSCLTVHVQGKDLTSGNILRGSMHLVDLAGSERVDKS EVTGDRLKEAQHINKSLSALGDVIASLASKSSHVPYRNSKLTQLLQDSLGGQAKTLMF VHIAPEYEALGETISTLKFAERVATVELGAAKVNKDSGEVRELKEQIASLKAALARKE GMPEYLQHTQSSSPESRPKLESSASLPKLQSFSDLSNGLANTENDSSSTSRRDSLEIQ EMLANPSLWPPLSSPAVTVKDDDRDSVPGDWVDKVMVKRHSNMSKDRNPSASREAGNR QLPDKFNQSYIRGPTKIYPEQNLNKFTTNRKGNQDYDLQRTRSEVGSTDDSDLEAATS DCSENDSVWQSNIPKITSGPNGLASKPKKQQLRTVKSTEFRSSIPSLIPSPSMRKSSN GVNPNLHKGKRKTGSTK" mobile_element 39793011..39793258 /note="source:scaffold_4_CACTA_0482 6072 6320" /mobile_element_type="transposon:TIR/CACTA" gene 39801670..39805988 /locus_tag="TCM_026728" /note="dbxref CacaoGD:Thecc1EG026728" mRNA join(39801670..39801732,39802351..39803514, 39803601..39804567,39804800..39805745) /locus_tag="TCM_026728" /product="RING/U-box protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s01270.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s01270.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11934t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11934t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1153t1" mRNA join(39801673..39801732,39802348..39803514, 39803601..39804567,39804800..39805745) /locus_tag="TCM_026728" /product="RING/U-box protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s01270.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s01270.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11934t2; alternateUTRof:Thecc1EG026728t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11934t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1153t1" mRNA join(39802135..39802281,39802348..39803514, 39803601..39804567,39804800..39805988) /locus_tag="TCM_026728" /product="RING/U-box protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s01270.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s01270.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1153t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1153t1" CDS join(39802255..39802281,39802348..39803514, 39803601..39804567,39804800..39805050) /locus_tag="TCM_026728" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="RING/U-box protein, putative isoform 1" /protein_id="EOY11588.1" /db_xref="Phytozome:POPTR_0013s01270.1" /db_xref="TAIR:AT3G05670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I722" /translation="MVFFLHQRGQMVRGGKVGCRTDYKKKVRSRYEGSDDSDEDYVVS EEGNEESEDAAEDYCSSLDERASEESFGSFVNEEDEEEEEKEVRKAVRSKAKPMSSAK ERKVVDRKSRKRKSVSDEEEEDEDYEEEEEDEDDDEEFTLDDEDCLDEEEELTMKKKK NNIKVSKQGLWKRGPSKHRKKRKKSGVSKKPLRKAGRKKRVLKRKTRVEEDEDDDDYC DFTDNAPIMRKKSRTNAGRRKKSYVVPSDSDFVSSGSSDYEYTISEEEREQVREASEL CGSLKTSLRSSSCSKRILEFEDLGQCKKPPGRKGKEKIEETKAEVLKQVCGICLSEED KRRLRGTLNCCSHYFCFTCIMEWSKVESRCPLCKQRFETISKPARSTAGVDLRDVVIE VPKRDQVYQPSEEELRSYLDPYENVICSECHQGGDDGLMLLCDLCDSSAHTYCVGLGR EVPEGNWYCDGCRPVALGSSSSQVQDSLPDQRTINNLYNRLSPIVNVGESLDPIVVPS PRTPLPPGFVGLPSPRFPVADISAVSPVSGAGAPTLTGRRWLHRQIQNLRSINRMNLM AGRTDGISTTNMGIDFVNSQIDQGRETTVQQARTQEMETLHQRVIEERLQDDPSSSLQ SRDFFSSRLSHLRRQAVQDSTTTTFNTSVNLTLWPELAGISSNEQLRQCSNGSNIVPD GCGLPFSVRDEDNFSMAKEQLQAMVRSHLKALSKDIDLDNGTFKDIATSSMHTLLAAC GLEHRRSEAHIVPPLNCTHIERVAAGQMSLMKGCCLTCFDSFVKDVVKRIMDTRSRQW LSLGL" CDS join(39802351..39803514,39803601..39804567, 39804800..39805050) /locus_tag="TCM_026728" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="RING/U-box protein, putative isoform 2" /protein_id="EOY11589.1" /db_xref="Phytozome:POPTR_0013s01270.1" /db_xref="TAIR:AT3G05670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I722" /translation="MVRGGKVGCRTDYKKKVRSRYEGSDDSDEDYVVSEEGNEESEDA AEDYCSSLDERASEESFGSFVNEEDEEEEEKEVRKAVRSKAKPMSSAKERKVVDRKSR KRKSVSDEEEEDEDYEEEEEDEDDDEEFTLDDEDCLDEEEELTMKKKKNNIKVSKQGL WKRGPSKHRKKRKKSGVSKKPLRKAGRKKRVLKRKTRVEEDEDDDDYCDFTDNAPIMR KKSRTNAGRRKKSYVVPSDSDFVSSGSSDYEYTISEEEREQVREASELCGSLKTSLRS SSCSKRILEFEDLGQCKKPPGRKGKEKIEETKAEVLKQVCGICLSEEDKRRLRGTLNC CSHYFCFTCIMEWSKVESRCPLCKQRFETISKPARSTAGVDLRDVVIEVPKRDQVYQP SEEELRSYLDPYENVICSECHQGGDDGLMLLCDLCDSSAHTYCVGLGREVPEGNWYCD GCRPVALGSSSSQVQDSLPDQRTINNLYNRLSPIVNVGESLDPIVVPSPRTPLPPGFV GLPSPRFPVADISAVSPVSGAGAPTLTGRRWLHRQIQNLRSINRMNLMAGRTDGISTT NMGIDFVNSQIDQGRETTVQQARTQEMETLHQRVIEERLQDDPSSSLQSRDFFSSRLS HLRRQAVQDSTTTTFNTSVNLTLWPELAGISSNEQLRQCSNGSNIVPDGCGLPFSVRD EDNFSMAKEQLQAMVRSHLKALSKDIDLDNGTFKDIATSSMHTLLAACGLEHRRSEAH IVPPLNCTHIERVAAGQMSLMKGCCLTCFDSFVKDVVKRIMDTRSRQWLSLGL" CDS join(39802351..39803514,39803601..39804567, 39804800..39805050) /locus_tag="TCM_026728" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="RING/U-box protein, putative isoform 2" /protein_id="EOY11590.1" /db_xref="Phytozome:POPTR_0013s01270.1" /db_xref="TAIR:AT3G05670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I722" /translation="MVRGGKVGCRTDYKKKVRSRYEGSDDSDEDYVVSEEGNEESEDA AEDYCSSLDERASEESFGSFVNEEDEEEEEKEVRKAVRSKAKPMSSAKERKVVDRKSR KRKSVSDEEEEDEDYEEEEEDEDDDEEFTLDDEDCLDEEEELTMKKKKNNIKVSKQGL WKRGPSKHRKKRKKSGVSKKPLRKAGRKKRVLKRKTRVEEDEDDDDYCDFTDNAPIMR KKSRTNAGRRKKSYVVPSDSDFVSSGSSDYEYTISEEEREQVREASELCGSLKTSLRS SSCSKRILEFEDLGQCKKPPGRKGKEKIEETKAEVLKQVCGICLSEEDKRRLRGTLNC CSHYFCFTCIMEWSKVESRCPLCKQRFETISKPARSTAGVDLRDVVIEVPKRDQVYQP SEEELRSYLDPYENVICSECHQGGDDGLMLLCDLCDSSAHTYCVGLGREVPEGNWYCD GCRPVALGSSSSQVQDSLPDQRTINNLYNRLSPIVNVGESLDPIVVPSPRTPLPPGFV GLPSPRFPVADISAVSPVSGAGAPTLTGRRWLHRQIQNLRSINRMNLMAGRTDGISTT NMGIDFVNSQIDQGRETTVQQARTQEMETLHQRVIEERLQDDPSSSLQSRDFFSSRLS HLRRQAVQDSTTTTFNTSVNLTLWPELAGISSNEQLRQCSNGSNIVPDGCGLPFSVRD EDNFSMAKEQLQAMVRSHLKALSKDIDLDNGTFKDIATSSMHTLLAACGLEHRRSEAH IVPPLNCTHIERVAAGQMSLMKGCCLTCFDSFVKDVVKRIMDTRSRQWLSLGL" gene complement(39806475..39809378) /locus_tag="TCM_026729" /note="dbxref CacaoGD:Thecc1EG026729" mRNA complement(join(39806475..39806857,39807464..39807714, 39808732..39808874,39809052..39809378)) /locus_tag="TCM_026729" /product="Drought-responsive family protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene31551" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021298t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s01250.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00918t00003; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g15251t3; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc161t7" mRNA complement(join(39806549..39806857,39807464..39807720, 39808091..39808168,39808732..39808874,39809052..39809365)) /locus_tag="TCM_026729" /product="Drought-responsive family protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene31551" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021298t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s01250.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g15251t3; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g15251t3" CDS complement(join(39806749..39806857,39807464..39807714, 39808732..39808874,39809052..39809127)) /locus_tag="TCM_026729" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG021298t1" /codon_start=1 /product="Drought-responsive family protein isoform 2" /protein_id="EOY11592.1" /db_xref="Phytozome:POPTR_0013s01250.1" /db_xref="TAIR:AT3G05700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I720" /translation="MDADSWSARLSSASKRYQSALQSRSDMFMGFEEIDGEGDIREEF PCPFCSEYFDIVGLCCHIDDEHPVEAKNGHRRKSRKGGSHSTLSLLRKELREGNLQSL FGGSSCIVSSSNSAPDPLLSSFILPMVDDFVSVQPHLSSETSTTKKSLDANKSERHVQ SSPLSVKDQEEKAKRCDFVQGLLLSTILDDVL" CDS complement(join(39806749..39806857,39807464..39807720, 39808091..39808168,39808732..39808874,39809052..39809127)) /locus_tag="TCM_026729" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG021298t1" /codon_start=1 /product="Drought-responsive family protein isoform 1" /protein_id="EOY11591.1" /db_xref="Phytozome:POPTR_0013s01250.1" /db_xref="TAIR:AT3G05700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I720" /translation="MDADSWSARLSSASKRYQSALQSRSDMFMGFEEIDGEGDIREEF PCPFCSEYFDIVGLCCHIDDEHPVEAKNGVCPVCAMRVGVDMVAHITLQHGNIFKMQH RRKSRKGGSHSTLSLLRKELREGNLQSLFGGSSCIVSSSNSAPDPLLSSFILPMVDDF VSVQPHLSSETSTTKKSLDANKSERHVQSSPLSVKDQEEKAKRCDFVQGLLLSTILDD VL" gene 39810649..39814146 /locus_tag="TCM_026730" /note="dbxref CacaoGD:Thecc1EG026730" mRNA join(39810649..39811035,39811610..39811886, 39812377..39812469,39812660..39812740,39813020..39813097, 39813192..39813257,39813331..39813414,39813498..39814146) /locus_tag="TCM_026730" /product="Syntaxin of plants 43 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s01240.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004740t1" /inference="similar to AA sequence:ricco:30128.m008880" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11949t2; inference alignment:Newbler:10:TSA:cgbaL_g01590t00001" mRNA join(39810815..39811035,39811610..39811886, 39812380..39812469,39812660..39812740,39813020..39813097, 39813192..39813257,39813334..39813414,39813498..39814067) /locus_tag="TCM_026730" /product="Syntaxin of plants 43 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s01240.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004740t1" /inference="similar to AA sequence:ricco:30128.m008880" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaL_g01590t00001" CDS join(39810821..39811035,39811610..39811886, 39812377..39812469,39812660..39812740,39813020..39813097, 39813192..39813257,39813331..39813414,39813498..39813605) /locus_tag="TCM_026730" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30128.m008880; paralog of Thecc1EG004740t1" /codon_start=1 /product="Syntaxin of plants 43 isoform 2" /protein_id="EOY11594.1" /db_xref="TAIR:AT3G05710.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SUJ1" /translation="MATRNRTLIFRKYRDALKSVRVPASSSSASASSAVAGTSSGGGP VIEMVSASLLHPNRSYAPLSTEDPGNSSKGAVTVGLPPAWVDVSEQIAANVQRARTKM AELAKAHAKALMPSFGDGKEDQRNIEALTHEITNLLKKSEKRLQQLSAAGRSEDSNVR KNVQQRSLATDLQNLSMELRKKQSTYLKRLRQQKEEGQDGVDIEMNLNGNRSKAEDDD LDDMVFNEHQMAKLKRSEAFTVEREREIQQVVESVNELAQIMKDLSVLVIDQQGTIVD RIDYNIQNVATTVEEGLKQLQKAERTQKQGGMVMCATVLVIMCFVMLALLILKEILF" CDS join(39810821..39811035,39811610..39811886, 39812380..39812469,39812660..39812740,39813020..39813097, 39813192..39813257,39813334..39813414,39813498..39813605) /locus_tag="TCM_026730" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30128.m008880; paralog of Thecc1EG004740t1" /codon_start=1 /product="Syntaxin of plants 43 isoform 1" /protein_id="EOY11593.1" /db_xref="TAIR:AT3G05710.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9SUJ1" /translation="MATRNRTLIFRKYRDALKSVRVPASSSSASASSAVAGTSSGGGP VIEMVSASLLHPNRSYAPLSTEDPGNSSKGAVTVGLPPAWVDVSEQIAANVQRARTKM AELAKAHAKALMPSFGDGKEDQRNIEALTHEITNLLKKSEKRLQQLSAAGRSEDSNVR KNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEEGQDGVDIEMNLNGNRSKAEDDDL DDMVFNEHQMAKLKRSEAFTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRI DYNIQNVATTVEEGLKQLQKAERTQKQGGMVMCATVLVIMCFVMLALLILKEILF" gene complement(39814724..39817526) /locus_tag="TCM_026731" /note="dbxref CacaoGD:Thecc1EG026731" mRNA complement(join(39814724..39815099,39815180..39815385, 39815643..39816306,39817210..39817407)) /locus_tag="TCM_026731" /product="DNA polymerase III polC-type, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031202001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021299t3" /inference="similar to AA sequence:Phytozome:GSVIVT01031202001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc2015t3" mRNA complement(join(39814792..39815101,39815721..39816306, 39817354..39817526)) /locus_tag="TCM_026731" /product="DNA polymerase III polC-type, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031202001" /inference="similar to AA sequence:Phytozome:GSVIVT01031202001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2184t5_C1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc2015t3" CDS complement(join(39814879..39815101,39815721..39816232)) /locus_tag="TCM_026731" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="DNA polymerase III polC-type, putative isoform 2" /protein_id="EOY11596.1" /db_xref="Phytozome:GSVIVT01031202001" /translation="MRSVAICLSMLQAPRGGIHGLANFCWESFHSLSGRRVNSSSFKL LASKTYGLEGGYSRRWIRRPVTTKIDGRNKTNRNTKPSNLVHEILDEKVSTSSSTLNL NKTEVSESQQLQYSGIQQMIAENKDLASLVTFIIYDTETSGLSRKEDRIIEIALQDLS GGENSTFQTLVGSNLPSGTSLQALREHYKIPLVGSAHRAMSDVRTLSLVLQMLTFDLK LSPSNLVTRSSTVLEYINNKRKKNSG" CDS complement(join(39814879..39815099,39815180..39815385, 39815643..39816232)) /locus_tag="TCM_026731" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG021299t3" /codon_start=1 /product="DNA polymerase III polC-type, putative isoform 1" /protein_id="EOY11595.1" /db_xref="Phytozome:GSVIVT01031202001" /db_xref="TAIR:AT5G26940.4" /db_xref="UniProtKB/TrEMBL:UniRef50_D7UA01" /translation="MRSVAICLSMLQAPRGGIHGLANFCWESFHSLSGRRVNSSSFKL LASKTYGLEGGYSRRWIRRPVTTKIDGRNKTNRNTKPSNLVHEILDEKVSTSSSTLNL NKTEVSESQQLQYSGIQQMIAENKDLASLVTFIIYDTETSGLSRKEDRIIEIALQDLS GGENSTFQTLVNPGRYVPNSHVHGITTNMVCRPDVPRMEELIPILLQFVKSRQKPGGY VLWAAHNSFAFDLPFLINEFSRCSYEIPSNWLFMDTLSLARELMKSGGSNLPSGTSLQ ALREHYKIPLVGSAHRAMSDVRTLSLVLQMLTFDLKLSPSNLVTRSSTVLEYINNKRK KNSG" mobile_element complement(39818959..39820000) /note="source:CACAO_on_E683_scaffold_9 1208 2299" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(39820135..39821493) /locus_tag="TCM_026732" /note="dbxref CacaoGD:Thecc1EG026732" mRNA complement(join(39820135..39820295,39820422..39820796, 39821059..39821166,39821246..39821493)) /locus_tag="TCM_026732" /product="GATA transcription factor 15, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s02040.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021303t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s02040.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g08711t00001" CDS complement(join(39820227..39820295,39820422..39820796, 39821059..39821166,39821246..39821272)) /locus_tag="TCM_026732" /note="paralog of Thecc1EG021303t1" /codon_start=1 /product="GATA transcription factor 15, putative" /protein_id="EOY11597.1" /db_xref="Phytozome:POPTR_0005s02040.1" /db_xref="TAIR:AT3G06740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N4N6" /translation="MGVMDLREKKSLSEVVMMSENNKKFCTDCKTTKTPLWRGGPAGP KSLCNACGIRYRKKRRAMLGLNKGPEKKKERSQSSHSSSTTTTTSSASVATTNVGDKK PSGQLNGLSESVKMRLYALGSEVFLQRSSSSSLLSGVVKKQRCQRRRKLGEEEQAAFS LMALSCGSVFFSPLFLSEMQMPFDLDYCSLEN" mobile_element complement(39822704..39823810) /note="source:INTACT639F_F363_scaffold_5-int 7469 8575" /mobile_element_type="retrotransposon:LTR/Copia" gene 39823918..39826494 /locus_tag="TCM_026733" /note="dbxref CacaoGD:Thecc1EG026733" mRNA join(39823918..39825153,39825245..39826494) /locus_tag="TCM_026733" /product="ATP binding,nucleic acid binding,helicases, putative" /inference="alignment:exonerate- protein:2:Phytozome:Sb03g030790.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026734t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s04770.1" /note="quality class is strong, express is weak, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.28 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00104t00004" CDS join(39824121..39825153,39825245..39825891) /locus_tag="TCM_026733" /note="paralog of Thecc1EG026734t1" /codon_start=1 /product="ATP binding,nucleic acid binding,helicases, putative" /protein_id="EOY11598.1" /db_xref="Phytozome:POPTR_0005s04770.1" /db_xref="TAIR:AT1G12700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I898" /translation="MHFLFCFAIASPSTWELLFSFSYPFLFFFLFPRFNKSRYAFHKI DDALVSFDHMLRTHPRPCIVEFTQVLGAIVRMKHYETAVSLSRQMDFLGIRHDVYTLN ILVNCFCSLHRTDFGFSLLGKMLKLGIQPDTTTFNTLVNGLCVEGKIAEAVILFDGIV RNGCQPDLITYGTVMNGLCKIGYTTGAIRLLRNMKQSGIVPNTVTYNTTIDCLCKDKL VPEALNLLSEMRGKGIPPDVVTYNSFIHAMCSLGQWNEVMRLLTEMVANNCKPNIVSY SILVDAFCTEGRVSEACDIVEGMIRRGVDSDTITYNALMDGYCLQGKMDEARKILNLM ITKGCVPNVYVPNTVTYTALINGMCQVGRLGAARELHKEMSARGLVPNTVTYSTLLHG LCKHGHVHEAAELFHVMQSNGIEANIVHYSILIDGLCQVGQLNVARKLFHSLPGKGLH PNVYTCDIMIKVLCKEGLPNEAYDLFRKMEVNGCLQDSCSYNTMIKGFFQNNDVSRAV QILHEMVDKGFSAGSSTATMVVDLLCKNGGDQSILELFLRNSEDDQNVNMK" mobile_element complement(39826549..39826633) /note="source:scaffold_1_CACTA_0005 6269 6352" /mobile_element_type="transposon:TIR/CACTA" gene 39826657..39828924 /locus_tag="TCM_026734" /note="dbxref CacaoGD:Thecc1EG026734" mRNA 39826657..39828924 /locus_tag="TCM_026734" /product="ATP binding,nucleic acid binding,helicases, putative" /inference="alignment:exonerate- protein:2:Phytozome:Sb03g030790.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026736t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s02630.1" /note="quality class is strong, express is strong, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.22 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01843t00001" CDS 39826816..39828714 /locus_tag="TCM_026734" /note="paralog of Thecc1EG026736t1" /codon_start=1 /product="ATP binding,nucleic acid binding,helicases, putative" /protein_id="EOY11599.1" /db_xref="Phytozome:POPTR_0016s02630.1" /db_xref="TAIR:AT1G12700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9P5D9" /translation="MVPLVSTPFVIWFLLLAILLEIDSKEKKTKMRAWRCTSSSSALQ LRLLLLGNSFSLSPPIFVSSLKYPFFSTSSTRFKKSKYVFHKIEDALDLFNHMLHTYP RPSIVEFTQVLGAIVRMKHYETAISLLRQMDLVGIRHDVYTLSILVNCFCRLRCSDFG FSLLGKMLKLGIQPDTTTFNTLVNGFCFEGKIAEAVILFDEIVRNGYQPDLITYNTMI NGLCKVGYTSGATKLLRNMEQSGCVPDIVTYNTIIDCLCKDKLVPEALNLLSEMRGKG IPQDVVTYNSFIHAMCSSGRWNEVMRLLTEMVANNCKPNIVSYSILVDAFCKEGRVSE ACDTIKVMIQQDVDPNTITYTALMGGYCLQGKMEEARRVLNLMITKGCVPNIYSYSIM INGYCKFQKIDEAMELFHEMSRNGLVPNTVTYNTLINGMCHLGRLSAARELFKEMSTR GLVPDMMTYSILLHGLCTHGHVDEAMELFHVMQSNGIEADIVHYSIIIDGLCQVGQLN VARKLFCALPVKGLHPNVYTCNIMIKGLCKEGLLNEAYDLFRKMEVNGCLQDSCSYNT MIKGFFQNNDVSRAVQILHEMVDRGFSADSSTATMVVDLLCKNGGDQSILELLFRNSE DDQNVNMK" gene complement(39828697..39836682) /locus_tag="TCM_026737" /note="dbxref CacaoGD:Thecc1EG026737" mRNA complement(join(39828697..39829115,39831656..39831722, 39832014..39832414,39833041..39833316,39833412..39833539, 39833672..39833800,39834043..39834121,39834224..39834387, 39834744..39834929,39835066..39835197,39835277..39835368, 39835450..39835546,39836305..39836678)) /locus_tag="TCM_026737" /product="Importin alpha, alpha,aimp alpha,impa-1,impa1 isoform 4" /inference="alignment:exonerate- protein:2:ricco:30128.m008884" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004757t2" /inference="similar to AA sequence:ricco:30128.m008884" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc285t30; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc294t11" mRNA complement(join(39828697..39829118,39832630..39832778, 39832942..39833316,39833412..39833539,39833672..39833800, 39834043..39834121,39834224..39834387,39834744..39834929, 39835066..39835197,39835277..39835368,39835450..39835546, 39836305..39836678)) /locus_tag="TCM_026737" /product="Importin alpha, ALPHA,AIMP ALPHA isoform 2" /inference="alignment:exonerate- protein:2:ricco:30128.m008884" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004757t2" /inference="similar to AA sequence:ricco:30128.m008884" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc285t31; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc294t11" gene complement(39828999..39829946) /locus_tag="TCM_026735" /note="dbxref CacaoGD:Thecc1EG026735" mRNA complement(join(39828999..39829267,39829608..39829946)) /locus_tag="TCM_026735" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026737t1" /note="quality class is medium, express is medium, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.47 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc286t17" CDS complement(join(39829019..39829267,39829608..39829670)) /locus_tag="TCM_026735" /note="paralog of Thecc1EG026737t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11604.1" /translation="MANRRNQMSRASNRGDHWVQQELYLVLHKALWIWWNNSWVPGQA SCCHVWVLSRVGCGVEDAGLAWVTNTPRVISCKGGYGWKMSLVICYNKLRNQRFNFGC S" mobile_element 39829443..39829563 /note="source:CACAO_LINE_E_241_scaffold_9 823 943" /mobile_element_type="retrotransposon:LINE/L1" mobile_element complement(39829445..39829603) /note="source:CACAO_LINE_E_177_scaffold_6 35 183" /mobile_element_type="retrotransposon:LINE/L1" gene 39829628..39832168 /locus_tag="TCM_026736" /note="dbxref CacaoGD:Thecc1EG026736" mRNA 39829628..39832168 /locus_tag="TCM_026736" /product="Tetratricopeptide repeat-like superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:Sb03g030790.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026734t1" /inference="similar to AA sequence:Phytozome:POPTR_0016s02630.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00104t00004" CDS 39829697..39831574 /locus_tag="TCM_026736" /note="paralog of Thecc1EG026734t1" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative" /protein_id="EOY11605.1" /db_xref="Phytozome:POPTR_0016s02630.1" /db_xref="TAIR:AT1G12700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9P5D9" /translation="MMRAWKCTSSSSALQLRLLLLGNSFSLSPPIFVSSFQYPFFSTS SPRFNKCKYVFHKIDDALDLFNHMLRTHPRPCIVEFTQVLGAIVRMKHYETAVSLSRQ MDLFGIRHDVYTFNILLNCFSRLHRTDFGFSLLGKMLKLGIQPNIITFTTLVNGLCFE GKIAQAVMLFDEIVRNGYQPNLITHNTIINGLCKVGYTTGAIRLLRNMERSGCLPDIV TYNTIIDSLCKDKLVAEALNLLSEMTGKGILSDVVTYSCLIHAMCNLGQWKEVMRLLT EMVANNCKLDVVSYGILVDAFCKEGRVSEARDIVEVMIQQGVDLDTITYTTLMDGYSL QGKMDEARKVLNLMITKGCVPNVCSYNIMVNGFCKLQKIDEAKELFDEMSRNGIVPST VTYTALINGMCQVGRLGAARELYKEMSARGLVPNTVTYSTLLHGLCKHGHVHEAVELF HVMQSNGIEANIVHYSILIDGLCQVGQLNVARKLFCALPVKGLHPNVYTFNIMIKGLC KEGLPNEAYDLFRKMEMNGCSLDSCSYNTMIKGFFQNNEVSRAVQILHEMVGKGFSAD SSTATMVVDLLCRNGGDQSILELLPRNSEDRSKRQHDMTCYPSNKNSTLKVFLCCKEF L" mRNA complement(join(39831922..39832778,39832980..39833316, 39833412..39833539,39833672..39833800,39834043..39834121, 39834224..39834387,39834744..39834929,39835066..39835197, 39835277..39835368,39835450..39835546,39836305..39836682)) /locus_tag="TCM_026737" /product="Importin alpha, alpha,aimp alpha,impa-1,impa1 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30128.m008884" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004757t2" /inference="similar to AA sequence:ricco:30128.m008884" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc294t11" mRNA complement(join(39832130..39832778,39832941..39833316, 39833412..39833539,39833672..39833800,39834043..39834121, 39834224..39834387,39834744..39834929,39835066..39835197, 39835277..39835368,39835450..39835546,39836305..39836682)) /locus_tag="TCM_026737" /product="Importin alpha, ALPHA,AIMP ALPHA isoform 2" /inference="alignment:exonerate- protein:2:ricco:30128.m008884" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004757t2" /inference="similar to AA sequence:ricco:30128.m008884" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12026t1; alternateUTRof:Thecc1EG026737t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc294t11" CDS complement(join(39832315..39832414,39833041..39833316, 39833412..39833539,39833672..39833800,39834043..39834121, 39834224..39834387,39834744..39834929,39835066..39835197, 39835277..39835368,39835450..39835546,39836305..39836514)) /locus_tag="TCM_026737" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30128.m008884; paralog of Thecc1EG004757t2" /codon_start=1 /product="Importin alpha, alpha,aimp alpha,impa-1,impa1 isoform 4" /protein_id="EOY11603.1" /db_xref="TAIR:AT3G06720.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q71VM4" /translation="MSLRPNARTEVRRNRYKVAVDAEEGRRRREDNMVEIRKNRREES LQKKRREGLQAQPMPASLHSSAVEKKLENLPAMVAGVWSEDSNLQLESTTQFRKLLSI ERSPPIEEVIQAGVVPRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAV PIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLGHGALLPLLAQLNEHAKLSML RNATWTLSNFCRGKPQPPFDQVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDK IQAVIEAGVCARLVELLLHPSPSVLIPALRTVGNIVTGDDLQTQCIINHQALPCLLNL LTNNFKKSIKKEACWTISNITAGNKEQIQAVIEANIIAPLVHLLQNAEFDIKKEAAWA ISNATSGGTHDQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKVGEADKNQG NTGGVNLYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKVLETYWLEEDMGIFFCFYVI GVLCCHIMHQNMPLLDSLIFFV" CDS complement(join(39832533..39832778,39832980..39833316, 39833412..39833539,39833672..39833800,39834043..39834121, 39834224..39834387,39834744..39834929,39835066..39835197, 39835277..39835368,39835450..39835546,39836305..39836514)) /locus_tag="TCM_026737" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30128.m008884; paralog of Thecc1EG004757t2" /codon_start=1 /product="Importin alpha, alpha,aimp alpha,impa-1,impa1 isoform 1" /protein_id="EOY11600.1" /db_xref="TAIR:AT4G16143.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ASV4" /translation="MSLRPNARTEVRRNRYKVAVDAEEGRRRREDNMVEIRKNRREES LQKKRREGLQAQPMPASLHSSAVEKKLENLPAMVAGVWSEDSNLQLESTTQFRKLLSI ERSPPIEEVIQAGVVPRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAV PIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLGHGALLPLLAQLNEHAKLSML RNATWTLSNFCRGKPQPPFDQVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDK IQAVIEAGVCARLVELLLHPSPSVLIPALRTVGNIVTGDDLQTQCIINHQALPCLLNL LTNNFKKSIKKEACWTISNITAGNKEQIQAVIEANIIAPLVHLLQNAEFDIKKEAAWA ISNATSGGTHDQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKVGEADKNQG NTGGVNLYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKVLETYWLEEEDETMPPGDAS QTGFQFGPGEELYLVLCKSLWIWWNNSWVPGQASCCHVWVLSRVGCGVEGAGLAWKNT ARFILCKKGNGGKMRLVICYNKLRNQSVYFGCS" CDS complement(join(39832944..39833316,39833412..39833539, 39833672..39833800,39834043..39834121,39834224..39834387, 39834744..39834929,39835066..39835197,39835277..39835368, 39835450..39835546,39836305..39836514)) /locus_tag="TCM_026737" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30128.m008884; paralog of Thecc1EG004757t2" /codon_start=1 /product="Importin alpha, ALPHA,AIMP ALPHA isoform 2" /protein_id="EOY11601.1" /db_xref="TAIR:AT3G06720.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ASV4" /translation="MSLRPNARTEVRRNRYKVAVDAEEGRRRREDNMVEIRKNRREES LQKKRREGLQAQPMPASLHSSAVEKKLENLPAMVAGVWSEDSNLQLESTTQFRKLLSI ERSPPIEEVIQAGVVPRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAV PIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLGHGALLPLLAQLNEHAKLSML RNATWTLSNFCRGKPQPPFDQVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDK IQAVIEAGVCARLVELLLHPSPSVLIPALRTVGNIVTGDDLQTQCIINHQALPCLLNL LTNNFKKSIKKEACWTISNITAGNKEQIQAVIEANIIAPLVHLLQNAEFDIKKEAAWA ISNATSGGTHDQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKVGEADKNQG NTGGVNLYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKVLETYWLEEEDETMPPGDAS QTGFQFGPGEVHVPSGGFNFS" CDS complement(join(39832944..39833316,39833412..39833539, 39833672..39833800,39834043..39834121,39834224..39834387, 39834744..39834929,39835066..39835197,39835277..39835368, 39835450..39835546,39836305..39836514)) /locus_tag="TCM_026737" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30128.m008884; paralog of Thecc1EG004757t2" /codon_start=1 /product="Importin alpha, ALPHA,AIMP ALPHA isoform 2" /protein_id="EOY11602.1" /db_xref="TAIR:AT3G06720.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9ASV4" /translation="MSLRPNARTEVRRNRYKVAVDAEEGRRRREDNMVEIRKNRREES LQKKRREGLQAQPMPASLHSSAVEKKLENLPAMVAGVWSEDSNLQLESTTQFRKLLSI ERSPPIEEVIQAGVVPRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAV PIFVKLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLGHGALLPLLAQLNEHAKLSML RNATWTLSNFCRGKPQPPFDQVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDK IQAVIEAGVCARLVELLLHPSPSVLIPALRTVGNIVTGDDLQTQCIINHQALPCLLNL LTNNFKKSIKKEACWTISNITAGNKEQIQAVIEANIIAPLVHLLQNAEFDIKKEAAWA ISNATSGGTHDQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKVGEADKNQG NTGGVNLYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKVLETYWLEEEDETMPPGDAS QTGFQFGPGEVHVPSGGFNFS" mobile_element 39837621..39837683 /note="source:CACAO_M_S_E16543_F3_scaffold_2 4788 4851" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(39839766..39841460) /locus_tag="TCM_026738" /note="dbxref CacaoGD:Thecc1EG026738" mRNA complement(join(39839766..39839847,39840263..39840398, 39840506..39840562,39840765..39840835,39840931..39841018, 39841150..39841460)) /locus_tag="TCM_026738" /product="Heat shock protein binding protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s02020.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004732t1" /inference="similar to AA sequence:Phytozome:Glyma19g41760.3" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12312t2" CDS complement(join(39839795..39839847,39840263..39840398, 39840506..39840562,39840765..39840835,39840931..39841018, 39841150..39841260)) /locus_tag="TCM_026738" /note="paralog of Thecc1EG004732t1" /codon_start=1 /product="Heat shock protein binding protein, putative" /protein_id="EOY11606.1" /db_xref="Phytozome:Glyma19g41760.3" /db_xref="TAIR:AT1G56300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RFG7" /translation="MDREGGSHGGSCYYSVLGIRKDASFSDIRTAYRKLALKWHPDRY ARNPGVAGEAKRRFQQIQEAYSVLSDETKRSMYDAGFYDPLEEEDDDFCGFMQEMISM MNNVKDEGDSFEDLQRMFAEMVGGDGLSFDVNTDTSETKRARVSKGNAAKRNAKRKLF NLLVFNNDPPL" gene complement(39843028..39850915) /locus_tag="TCM_026739" /note="dbxref CacaoGD:Thecc1EG026739" mRNA complement(join(39843028..39843919,39844069..39844240, 39844339..39844551,39844674..39844834,39844941..39845434, 39845648..39845700,39846104..39846185,39846282..39846553, 39850763..39850915)) /locus_tag="TCM_026739" /product="Calmodulin-binding protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s02010.1" /inference="similar to AA sequence:Phytozome:POPTR_0005s02010.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12014t1" CDS complement(join(39843429..39843919,39844069..39844240, 39844339..39844551,39844674..39844834,39844941..39845434, 39845648..39845700,39846104..39846185,39846282..39846385)) /locus_tag="TCM_026739" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Calmodulin-binding protein, putative isoform 1" /protein_id="EOY11607.1" /db_xref="Phytozome:POPTR_0005s02010.1" /db_xref="TAIR:AT5G57580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N4N9" /translation="MMLPIKRSATDGGDERLGVMVPDPKRRATLKSSWSGARNIAGLG GLSLKRIVLNLEPMLRSWVREEVERGILSSFHPSSRSLLNQIEASRGRSLQLRFVDKL PPTIFTGGKVEAEEGNPVRIVLFDTSSNKIATSGPLSSLKVEIVVLNGDFGADEREDW TENEFNASVLREREGKRPLLTGDLNVTMADGVGTIDNVIFTDNSSWIRSRKFRLGARI VQRISGEVTIREAISEAFVVKDHRGELYKKHHPPSQRDEVWRLERIAKDGAFHRRLAS NNISTVKDFLRLHVTDPSALRDMLGGGISNRVWDTIIEHALTCVLDDDEWYTYTYYGA QQRVGLLLNSIFKGVAATFGGQNYQPLEKLTFSQKLLVEDAKRQAYRNVGDLVLTNRQ AIFGPSMTLTNLLPEPDTIPNLLLQQPDFSVANQDQPDIALGFNQSSTSYAYEVEENN QPQVSLAQDGHGIQAFNPMLRNSFRMEGIFPYHGDNSLSLLPDFHFATEDNPQAQMQS WASVTPAWRQASGFILTPDCESSVGILPSSPDFNVHSQSMGKGRDVCPKAGWLKLRAV IQWKSITRGAKALAARRRMYINY" mRNA complement(join(<39843892..39843919,39844069..39844240, 39844339..39844551,39844674..39844834,39844941..39845434, 39845648..39845700,39846104..39846185,39846282..39846823, 39847670..39847772,39847930..39848041)) /locus_tag="TCM_026739" /product="Calmodulin-binding protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s02010.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038909t4" /inference="similar to AA sequence:Phytozome:POPTR_0005s02010.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc364t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12014t1" CDS complement(join(<39843894..39843919,39844069..39844240, 39844339..39844551,39844674..39844834,39844941..39845434, 39845648..39845700,39846104..39846185,39846282..39846385)) /locus_tag="TCM_026739" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG038909t4" /codon_start=1 /product="Calmodulin-binding protein, putative isoform 2" /protein_id="EOY11608.1" /db_xref="Phytozome:POPTR_0005s02010.1" /db_xref="TAIR:AT5G57580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N4N9" /translation="MMLPIKRSATDGGDERLGVMVPDPKRRATLKSSWSGARNIAGLG GLSLKRIVLNLEPMLRSWVREEVERGILSSFHPSSRSLLNQIEASRGRSLQLRFVDKL PPTIFTGGKVEAEEGNPVRIVLFDTSSNKIATSGPLSSLKVEIVVLNGDFGADEREDW TENEFNASVLREREGKRPLLTGDLNVTMADGVGTIDNVIFTDNSSWIRSRKFRLGARI VQRISGEVTIREAISEAFVVKDHRGELYKKHHPPSQRDEVWRLERIAKDGAFHRRLAS NNISTVKDFLRLHVTDPSALRDMLGGGISNRVWDTIIEHALTCVLDDDEWYTYTYYGA QQRVGLLLNSIFKGVAATFGGQNYQPLEKLTFSQKLLVEDAKRQAYRNVGDLVLTNRQ AIFGPSMTLTNLLPEPDTIPNLLLQQPDFSVANQDQPDIALGF" mobile_element 39847586..39847619 /note="source:CACAO_M_S_E4863_F51_scaffold_1 5698 5731" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(39849942..39850178) /note="source:scaffold_4_CACTA_0506 6759 7015" /mobile_element_type="transposon:TIR/CACTA" mobile_element 39850115..39850322 /note="source:INTACT383F_F354_scaffold_3-int 906 1090" /mobile_element_type="retrotransposon:LTR/Unclassified" mobile_element 39850924..39851082 /note="source:scaffold_1_CACTA_0030 429 572" /mobile_element_type="transposon:TIR/CACTA" gene <39851277..39857924 /locus_tag="TCM_026741" /note="dbxref CacaoGD:Thecc1EG026741" mRNA join(39851277..39852519,39853011..39853184, 39853418..39853459,39853551..39853631,39853723..39853842, 39854804..39854922,39855023..39855108,39855275..39855437, 39857030..39857543,39857651..39857924) /locus_tag="TCM_026741" /product="HD subdomain, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400042843" /inference="similar to AA sequence:Phytozome:POPTR_0005s02000.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11985t1" mRNA join(<39851277..39852519,39853011..39853184, 39853418..39853459,39853551..39853631,39853783..39853842, 39854804..39854908,39855023..39855653) /locus_tag="TCM_026741" /product="HD subdomain, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400042843" /inference="similar to AA sequence:Phytozome:POPTR_0005s02000.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.91 coverage; inference alignment:PASA:2:TSA:puevd3b025873t1a3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11985t1" CDS join(<39851278..39852519,39853011..39853184, 39853418..39853459,39853551..39853631,39853783..39853842, 39854804..39854908,39855023..39855094) /locus_tag="TCM_026741" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="HD subdomain, putative isoform 3" /protein_id="EOY11611.1" /db_xref="Phytozome:POPTR_0005s02000.1" /db_xref="TAIR:AT1G09195.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N4P0" /translation="KPFCLGHKARFFSSIISTVASPSKFRILKQEGNNQLTITRRLDE EMSKGQRESFAMANNLFAAIDMGTNAFKLLIVQAYSPGKFLPILNVKEPVVLGRDSAS SAISASSQHHSVKALVEFNEILETYRIPSLHTRCVATSAVREARNKAQFIDSVAEATG LEVEVLSGEQEARYSYLGALQFLPVFDKCVLNVDIGGGSSELAIGSRGKVDYCLSLKL GHVTMAQQDFGDEEAERVFNMREYVRKVVKESGLVEKVKNFGFEVAVGSSGTIRAIER AVHKGYGLGFDGNEAVLRECKRDWRITRKELKSVVKRLCNGGEGEKVSREKFFKKRSE SIVAGGILIEEMFDLLGIEYMLVSGYGLREGVIADTLAKVFDDGYDLNASARFRSILQ LTTGIYSKKMITSAAECASIARVIFEGLEKCKELDNDGVKLAVPLDDKDLEYIEAACL LHNIGLIDGKKGYHKQSYHIIMNGNHLQGYSAEEVKLIALLTRHHRKKLPKFGHASFN EFGDENGYISYKDMSFSHSHDGFKLVLGEARGQTLLPGVEQCTADKFEKELRHELEYF KKVFKQELFVQIPSFSSTNHENESC" mRNA join(39851335..39852519,39853011..39853184, 39853418..39853459,39853551..39853631,39853723..39853842, 39854804..39854883,39855023..39855677) /locus_tag="TCM_026741" /product="HD subdomain, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400042843" /inference="similar to AA sequence:Phytozome:POPTR_0005s02000.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc24t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11985t1" CDS join(39851413..39852519,39853011..39853184, 39853418..39853459,39853551..39853631,39853723..39853842, 39854804..39854922,39855023..39855108,39855275..39855345) /locus_tag="TCM_026741" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="HD subdomain, putative isoform 1" /protein_id="EOY11609.1" /db_xref="Phytozome:POPTR_0005s02000.1" /db_xref="TAIR:AT1G09195.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N4P0" /translation="MSKGQRESFAMANNLFAAIDMGTNAFKLLIVQAYSPGKFLPILN VKEPVVLGRDSASSAISASSQHHSVKALVEFNEILETYRIPSLHTRCVATSAVREARN KAQFIDSVAEATGLEVEVLSGEQEARYSYLGALQFLPVFDKCVLNVDIGGGSSELAIG SRGKVDYCLSLKLGHVTMAQQDFGDEEAERVFNMREYVRKVVKESGLVEKVKNFGFEV AVGSSGTIRAIERAVHKGYGLGFDGNEAVLRECKRDWRITRKELKSVVKRLCNGGEGE KVSREKFFKKRSESIVAGGILIEEMFDLLGIEYMLVSGYGLREGVIADTLAKVFDDGY DLNASARFRSILQLTTGIYSKKMITSAAECASIARVIFEGLEKCKELDNDGVKLAVPL DDKDLEYIEAACLLHNIGLIDGKKGYHKQSYHIIMNGNHLQGYSAEEVKLIALLTRHH RKKLPKFGHASFNEFGDEAKQKFGVLCAIIRLSVVLHQNGYISYKDMSFSHSHDGFKL VLGEARGQTLLPGVEQCTADKFEKELRHELEYFKKAKSFKFSSKNCLFKYHHSLQLTM KMKVADKKAAIPVNVRPSRVLNNTKLLCTAPHH" CDS join(39851413..39852519,39853011..39853184, 39853418..39853459,39853551..39853631,39853723..39853842, 39854804..39854883,39855023..39855113) /locus_tag="TCM_026741" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="HD subdomain, putative isoform 2" /protein_id="EOY11610.1" /db_xref="Phytozome:POPTR_0005s02000.1" /db_xref="TAIR:AT1G09195.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N4P0" /translation="MSKGQRESFAMANNLFAAIDMGTNAFKLLIVQAYSPGKFLPILN VKEPVVLGRDSASSAISASSQHHSVKALVEFNEILETYRIPSLHTRCVATSAVREARN KAQFIDSVAEATGLEVEVLSGEQEARYSYLGALQFLPVFDKCVLNVDIGGGSSELAIG SRGKVDYCLSLKLGHVTMAQQDFGDEEAERVFNMREYVRKVVKESGLVEKVKNFGFEV AVGSSGTIRAIERAVHKGYGLGFDGNEAVLRECKRDWRITRKELKSVVKRLCNGGEGE KVSREKFFKKRSESIVAGGILIEEMFDLLGIEYMLVSGYGLREGVIADTLAKVFDDGY DLNASARFRSILQLTTGIYSKKMITSAAECASIARVIFEGLEKCKELDNDGVKLAVPL DDKDLEYIEAACLLHNIGLIDGKKGYHKQSYHIIMNGNHLQGYSAEEVKLIALLTRHH RKKLPKFGHASFNEFGDEAKQKFGVLCAIIRLSVVLHQNGYISYKDMSFSHSHDGFKL VLGEARGQTLLPGVEQCTADKFEKELRFSSKNCLFKYHHSLQLTMKMKVADKKAAS" mRNA join(<39851617..39852519,39853011..39853184, 39853418..39853459,39853551..39853631,39853723..39853806, 39855021..39855677) /locus_tag="TCM_026741" /product="HD subdomain, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400042843" /inference="similar to AA sequence:Phytozome:POPTR_0005s02000.1" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial5; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc13t10; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11985t1" CDS join(<39851617..39852519,39853011..39853184, 39853418..39853459,39853551..39853631,39853723..39853806, 39855021..39855113) /locus_tag="TCM_026741" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="HD subdomain, putative isoform 4" /protein_id="EOY11612.1" /db_xref="Phytozome:POPTR_0005s02000.1" /db_xref="TAIR:AT1G09195.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N4P0" /translation="VKALVEFNEILETYRIPSLHTRCVATSAVREARNKAQFIDSVAE ATGLEVEVLSGEQEARYSYLGALQFLPVFDKCVLNVDIGGGSSELAIGSRGKVDYCLS LKLGHVTMAQQDFGDEEAERVFNMREYVRKVVKESGLVEKVKNFGFEVAVGSSGTIRA IERAVHKGYGLGFDGNEAVLRECKRDWRITRKELKSVVKRLCNGGEGEKVSREKFFKK RSESIVAGGILIEEMFDLLGIEYMLVSGYGLREGVIADTLAKVFDDGYDLNASARFRS ILQLTTGIYSKKMITSAAECASIARVIFEGLEKCKELDNDGVKLAVPLDDKDLEYIEA ACLLHNIGLIDGKKGYHKQSYHIIMNGNHLQGYSAEEVKLIALLTRHHRKKLPKFGHA SFNEFGDEAKQKFGVLCAIIRLSVVLHQNGYISYKDRFSSKNCLFKYHHSLQLTMKMK VADKKAAS" gene 39856786..39862109 /locus_tag="TCM_026742" /note="dbxref CacaoGD:Thecc1EG026742" mRNA join(39856786..39856858,39857930..39858078, 39858233..39858914,39859037..39859121,39859325..39859412, 39859774..39859958,39860238..39860370,39860655..39860791, 39860899..39860973,39861100..39861219,39861298..39862109) /locus_tag="TCM_026742" /product="Polynucleotidyl transferase isoform 1" /inference="alignment:exonerate- protein:2:ricco:30128.m008888" /inference="similar to AA sequence:ricco:30128.m008888" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11994t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11994t2" mRNA join(39856786..39856858,39857930..39858079, 39858233..39858914,39859037..39859121,39859325..39859412, 39859831..39859958,39860238..39860370,39860655..39860791, 39860897..39860973,39861100..39861263) /locus_tag="TCM_026742" /product="Polynucleotidyl transferase isoform 3" /inference="alignment:exonerate- protein:2:ricco:30128.m008888" /inference="similar to AA sequence:Phytozome:POPTR_0005s01990.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11994t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11994t2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1082t5" mRNA join(39857577..39858078,39858220..39858914, 39859037..39859121,39859325..39859412,39859774..39859958, 39860238..39860370,39860655..>39860683) /locus_tag="TCM_026742" /product="Polynucleotidyl transferase isoform 4" /inference="alignment:exonerate- protein:2:ricco:30128.m008888" /inference="similar to AA sequence:Phytozome:POPTR_0005s01990.1" /note="transcript variant 4; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1083t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11994t2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1082t5" mRNA join(39857577..39858078,39858233..39858914, 39859037..39859121,39859325..39859394,39859774..39859958, 39860238..39860370,39860655..>39860683) /locus_tag="TCM_026742" /product="Polynucleotidyl transferase isoform 5" /inference="alignment:exonerate- protein:2:ricco:30128.m008888" /inference="similar to AA sequence:ricco:30128.m008888" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1083t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11994t2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1082t5" mRNA join(39857603..39858078,39858233..39858914, 39859037..39859121,39859325..39859412,39859774..39859958, 39860238..39860370,39860655..39860791,39860899..39860973, 39861100..39861219,39861298..39862109) /locus_tag="TCM_026742" /product="Polynucleotidyl transferase isoform 1" /inference="alignment:exonerate- protein:2:ricco:30128.m008888" /inference="similar to AA sequence:ricco:30128.m008888" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11994t3; alternateUTRof:Thecc1EG026742t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11994t2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1082t5" CDS join(39857931..39858078,39858233..39858914, 39859037..39859121,39859325..39859412,39859774..39859958, 39860238..39860370,39860655..39860791,39860899..39860973, 39861100..39861219,39861298..39861381) /locus_tag="TCM_026742" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30128.m008888" /codon_start=1 /product="Polynucleotidyl transferase isoform 1" /protein_id="EOY11613.1" /db_xref="TAIR:AT1G56310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N4P1" /translation="MGFEEKAIKLQVKKDKTCQTETICVHAFNDLTYVPPVMFLYLLK ECYFHGNLKATKKFRALQQQVCHVLHNSPQPGPATFVAYCLYILPIFGPYCEGFSHLI VSALHRFLKTAATTGDSLEAKSLAARLFLYIIDGFIDHDERIAVKILEVFDVKLTDVE KVLSQLKVQNDCRSDCAKIFVEQYIFGLIESQSYMTAVNLLEHFSIRQSGESFLLKMM EKKQFRAAEKWAMFMGKPMLSILVQEYADRNMLKNAYVIIKKNNLLQEFPDVHHKYKE SALKKLAEKACWDVAESKTNGNRQLVEYLVYLAMEAGYSEKVDELCNRYSLEGFFKAK ELEASFLHRRFLNLNELVVEDIIWVDEVDGLCKATCNIEGSKVAGLDCEWKPNYVKGS KPNKVSIMQIASDKMVFIFDLIKLYKDVPDVLDKCLSRILKSPRILKLGYNFQCDVKQ LAQSYGDLECFKSYNMLLDIQNVFKDPRGGLSGLAEKILGAGLNKTRRNSDWEQRPLT RNQLEYAALDAAVLIQIFFHVRDHSHPADVSERHDKIEWKSHIVSYIDNPKKSKKESN VRKELEVEDNEP" CDS join(39857931..39858078,39858233..39858914, 39859037..39859121,39859325..39859412,39859774..39859958, 39860238..39860370,39860655..39860791,39860899..39860973, 39861100..39861219,39861298..39861381) /locus_tag="TCM_026742" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30128.m008888" /codon_start=1 /product="Polynucleotidyl transferase isoform 1" /protein_id="EOY11614.1" /db_xref="TAIR:AT1G56310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N4P1" /translation="MGFEEKAIKLQVKKDKTCQTETICVHAFNDLTYVPPVMFLYLLK ECYFHGNLKATKKFRALQQQVCHVLHNSPQPGPATFVAYCLYILPIFGPYCEGFSHLI VSALHRFLKTAATTGDSLEAKSLAARLFLYIIDGFIDHDERIAVKILEVFDVKLTDVE KVLSQLKVQNDCRSDCAKIFVEQYIFGLIESQSYMTAVNLLEHFSIRQSGESFLLKMM EKKQFRAAEKWAMFMGKPMLSILVQEYADRNMLKNAYVIIKKNNLLQEFPDVHHKYKE SALKKLAEKACWDVAESKTNGNRQLVEYLVYLAMEAGYSEKVDELCNRYSLEGFFKAK ELEASFLHRRFLNLNELVVEDIIWVDEVDGLCKATCNIEGSKVAGLDCEWKPNYVKGS KPNKVSIMQIASDKMVFIFDLIKLYKDVPDVLDKCLSRILKSPRILKLGYNFQCDVKQ LAQSYGDLECFKSYNMLLDIQNVFKDPRGGLSGLAEKILGAGLNKTRRNSDWEQRPLT RNQLEYAALDAAVLIQIFFHVRDHSHPADVSERHDKIEWKSHIVSYIDNPKKSKKESN VRKELEVEDNEP" CDS join(39857931..39858078,39858233..39858914, 39859037..39859121,39859325..39859394,39859774..39859958, 39860238..39860370,39860655..>39860683) /locus_tag="TCM_026742" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:30128.m008888" /codon_start=1 /product="Polynucleotidyl transferase isoform 5" /protein_id="EOY11617.1" /db_xref="TAIR:AT1G56310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N4P1" /translation="MGFEEKAIKLQVKKDKTCQTETICVHAFNDLTYVPPVMFLYLLK ECYFHGNLKATKKFRALQQQVCHVLHNSPQPGPATFVAYCLYILPIFGPYCEGFSHLI VSALHRFLKTAATTGDSLEAKSLAARLFLYIIDGFIDHDERIAVKILEVFDVKLTDVE KVLSQLKVQNDCRSDCAKIFVEQYIFGLIESQSYMTAVNLLEHFSIRQSGESFLLKMM EKKQFRAAEKWAMFMGKPMLSILVQEYADRNMLKNAYVIIKKNNLLQEFPDVHHKYKE SALKKLAEKACWDVAESKTNGNRQLVEYLVYLAMEAGYSEKVDELCNRYSLEELEASF LHRRFLNLNELVVEDIIWVDEVDGLCKATCNIEGSKVAGLDCEWKPNYVKGSKPNKVS IMQIASDKMVFIFDLIKLYKDVPDVLDKCLSRILKSPRILKLGYNFQCDVKQ" CDS join(39858028..39858079,39858233..39858914, 39859037..39859121,39859325..39859412,39859831..39859958, 39860238..39860370,39860655..39860791,39860897..39860920) /locus_tag="TCM_026742" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Polynucleotidyl transferase isoform 3" /protein_id="EOY11615.1" /db_xref="Phytozome:POPTR_0005s01990.1" /db_xref="TAIR:AT1G56310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N4P1" /translation="MFLRSCSYTFLKNVIFMGNLKATKKFRALQQQVCHVLHNSPQPG PATFVAYCLYILPIFGPYCEGFSHLIVSALHRFLKTAATTGDSLEAKSLAARLFLYII DGFIDHDERIAVKILEVFDVKLTDVEKVLSQLKVQNDCRSDCAKIFVEQYIFGLIESQ SYMTAVNLLEHFSIRQSGESFLLKMMEKKQFRAAEKWAMFMGKPMLSILVQEYADRNM LKNAYVIIKKNNLLQEFPDVHHKYKESALKKLAEKACWDVAESKTNGNRQLVEYLVYL AMEAGYSEKVDELCNRYSLEGFFKAKEDIIWVDEVDGLCKATCNIEGSKVAGLDCEWK PNYVKGSKPNKVSIMQIASDKMVFIFDLIKLYKDVPDVLDKCLSRILKSPRILKLGYN FQCDVKQLAQSYGDLECFKSYNMLLDIQNVFKDPRGGLSGLAERKYWEQA" CDS join(39858028..39858078,39858220..39858914, 39859037..39859121,39859325..39859412,39859774..39859958, 39860238..39860370,39860655..>39860683) /locus_tag="TCM_026742" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Polynucleotidyl transferase isoform 4" /protein_id="EOY11616.1" /db_xref="Phytozome:POPTR_0005s01990.1" /db_xref="TAIR:AT1G56310.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N4P1" /translation="MFLRSCSYTFLKNVIFMMILTGNLKATKKFRALQQQVCHVLHNS PQPGPATFVAYCLYILPIFGPYCEGFSHLIVSALHRFLKTAATTGDSLEAKSLAARLF LYIIDGFIDHDERIAVKILEVFDVKLTDVEKVLSQLKVQNDCRSDCAKIFVEQYIFGL IESQSYMTAVNLLEHFSIRQSGESFLLKMMEKKQFRAAEKWAMFMGKPMLSILVQEYA DRNMLKNAYVIIKKNNLLQEFPDVHHKYKESALKKLAEKACWDVAESKTNGNRQLVEY LVYLAMEAGYSEKVDELCNRYSLEGFFKAKELEASFLHRRFLNLNELVVEDIIWVDEV DGLCKATCNIEGSKVAGLDCEWKPNYVKGSKPNKVSIMQIASDKMVFIFDLIKLYKDV PDVLDKCLSRILKSPRILKLGYNFQCDVKQ" gene complement(39862378..39863241) /locus_tag="TCM_026743" /note="dbxref CacaoGD:Thecc1EG026743" mRNA complement(39862378..39863241) /locus_tag="TCM_026743" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:TAIR:AT3G05725.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.87 coverage" CDS complement(39862769..39863128) /locus_tag="TCM_026743" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11618.1" /translation="MEEYFRRPSYRPAAAGVGGRNPEISDSNMLKYVNKVYFGRSSQP PALDPSPFDRKQNAKKKRKEESRTTSKSWWNEPKMKRKRRLAKYKMFALEGKLKESLK KGSRWIKKKYCKIVHGY" gene 39863621..39868231 /locus_tag="TCM_026744" /note="dbxref CacaoGD:Thecc1EG026744" mRNA join(39863621..39864106,39864306..39864667, 39864802..39865062,39865386..39865549,39865667..39865763, 39865852..39865895,39866387..39866501,39866588..39866941, 39867313..39867537,39867631..39868231) /locus_tag="TCM_026744" /product="RECQ helicase l1" /inference="alignment:exonerate- protein:2:TAIR:AT3G05740.1" /inference="similar to AA sequence:Phytozome:POPTR_0005s01970.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11975t3" CDS join(39863992..39864106,39864306..39864667, 39864802..39865062,39865386..39865549,39865667..39865763, 39865852..39865895,39866387..39866501,39866588..39866941, 39867313..39867537,39867631..39867738) /locus_tag="TCM_026744" /codon_start=1 /product="RECQ helicase l1" /protein_id="EOY11619.1" /db_xref="Phytozome:POPTR_0005s01970.1" /db_xref="TAIR:AT3G05740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FT74" /translation="MNGHDFELEKARLLSLALEFGFDEQSAKKSLDRLISLYGDDGRD FITVEHCGDDFLAALAETMQDSEDWDDDLQAVESEACGALNNMFDKNALCNGKIDSNR NERIYINIIDDSPERKKQTNFMELDSSSDDEVLDLRISKKKGDSSTLSSRLDQSSCVG SKTSVTQGSVSSISGKKHFSTTSMGGHGTLSYEELQALDDFELANVVIFGNRSFRPLQ HQACKSSLVKQDCFILMPTGGGKSLCYQLPATLKPGVTVVISPLLSLIQDQIITLNLK FGIPATFLNSQQSASQAAAVLQELRKDNPSCKLLYVTPERVVGNQSFLEVLKCLHRKG QLAGFVVDEAHCVSQWGHDFRPDYRGLGCLKQHFPNVPVMALTATATHSVREDILNAL RIPHALVLKTSFDRPNLKYEVIGKAKDSLKQLGQLLQDRFKNQCGIVYCLSKNECAEV SNFLNEKCKIRTVYYHAGLAARQRVTVQKKWYEGEVQIVCATIAFGMGIDKPDVRFVI HNTMSKSIESYYQESGRAGRDNCPAVCIALYQKKDFSRVVCMLRNGQGSKSKSFKTAM AQAQKMQQYCELKDECRRQMLLEHFGESFDRKDCKHGSNPCDNCLRTS" mobile_element complement(39868930..39868985) /note="source:CACAO_M_E59600_F12_scaffold_9 13038 13094" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 39869521..39874733 /locus_tag="TCM_026745" /note="dbxref CacaoGD:Thecc1EG026745" mRNA join(39869521..39870106,39870217..39870349, 39870516..39870642,39870761..39870816,39870922..39872676, 39873318..39873471,39873800..>39874251) /locus_tag="TCM_026745" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031214001" /inference="similar to AA sequence:Phytozome:POPTR_0005s01960.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1030t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12018t3" mRNA join(39869521..39870106,39870217..39870349, 39870532..39870642,39870761..39870816,39870922..39872676, 39873318..39873471,39873826..>39873849) /locus_tag="TCM_026745" /product="Uncharacterized protein isoform 6" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031214001" /inference="similar to AA sequence:Phytozome:POPTR_0005s01960.1" /note="transcript variant 6; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1030t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12018t3" mRNA join(39869541..39870106,39870217..39870349, 39870516..39870642,39870764..39870816,39870922..39872676, 39873318..39873471,39873800..>39874097) /locus_tag="TCM_026745" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031214001" /inference="similar to AA sequence:Phytozome:POPTR_0005s01960.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc970t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12018t3" mRNA join(39869541..39870106,39870217..39870349, 39870532..39870642,39870764..39870816,39870922..39872676, 39873318..39873471,39873826..39874097) /locus_tag="TCM_026745" /product="Uncharacterized protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031214001" /inference="similar to AA sequence:Phytozome:POPTR_0005s01960.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc970t4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12018t3" mRNA join(39869541..39870106,39870217..39870335, 39870532..39870642,39870764..39870816,39870922..39872676, 39873318..39873471,39873800..>39874097) /locus_tag="TCM_026745" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031214001" /inference="similar to AA sequence:Phytozome:POPTR_0005s01960.1" /note="transcript variant 7; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc970t3; alternateUTRof:Thecc1EG026745t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12018t3" mRNA join(39869567..39870106,39870217..39870349, 39870532..39870642,39870764..39870816,39870922..39872676, 39873318..39873471,39873800..39874733) /locus_tag="TCM_026745" /product="Uncharacterized protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031214001" /inference="similar to AA sequence:Phytozome:POPTR_0005s01960.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:PASA:2:TSA:puevd3b025877t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12018t3" mRNA join(39869567..39870106,39870217..39870349, 39870532..39870642,39870761..39870816,39870922..39872676, 39873318..39873471,39873800..39874658) /locus_tag="TCM_026745" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031214001" /inference="similar to AA sequence:Phytozome:POPTR_0005s01960.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12018t3" CDS join(39870540..39870642,39870761..39870816, 39870922..39872676,39873318..39873471,39873800..39874464) /locus_tag="TCM_026745" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY11620.1" /db_xref="Phytozome:POPTR_0005s01960.1" /db_xref="TAIR:AT5G26910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AF59" /translation="MEVERKRTKGGFFQLFDWNGKSRKKLFSNNSELSEESRRGTPVE NLAKSLPHTTEGDEYNATSSSRRSCDFSSASSVTSDEGYGSRAPGVVARLMGLDSLPT LNVPEPSSTQYSGSCSLRASHYERSTPNLWNECQPTDYTNISNKLDRLSSNPIEPRFH KVQNRPIERFQTEILPPKSAKPIPITHHKLLSPIRSPGFIPTKNAAYIMEAAAKIIEA SPQTTSKGKGPSLGSSSVPLRIRDLKGKIEAAHKASRPQRPDEPSVSAMKPLKGQHKN KSHNKSDYTPTLRISRDSEKVSSNSLRNKGKSVSLAEQARVNVQRRDGSFSSSNGSSA SQKERNDAKRKQFSRSQADMQRTVEKGTSANRTNNVLRPNNQKQNCISTRDYSTSKTS TLDQHARKARSMNGTIGRNRTLNKVTINSEPQSRKTGSVANDAAKELPMSRRKNLPKK KRPVNEDLASGETSSDTSSINYSEKSIKCNVATNGHLNRDAEKMKKSMDVVSFTFTSP ISRVAEKSSSFDSDPSGDNYLLYLKSSAFSSPGFNIIGGDSLSVLLEKKLQELTCGVE SSNCNIIVDGTSASPASSLQNSVSSSGMVPTTLGGHHKRLQVDLDKDISYSSGDFDHS SMDTMGLDWRKKWQLSEETEEQNACSSSSSSEIGVGLDYRHPIPLSIFEPDVMSRSCS DSRNGTEGMKQFMLAQDQGASSWTPGSESLTEFGTELSDSASSTSVGEMGKKLLTSTS SSRDLKESTNWELDYLKMVLKDSELMFTEYALGRTEKVMTLNAFNQLEHRNETERIGE DHDKLYQKLLLDCVSDCLESRCKQLFVGTCKGWVKWEKLIQKREWLAQELYKEIWGWE SMGDTMVDDLVDKDMSTQHGRWLGFDLEAFEEGVEIEKSIFSSLVDDLVSDFLL" CDS join(39870540..39870642,39870764..39870816, 39870922..39872676,39873318..39873471,39873800..39874464) /locus_tag="TCM_026745" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 4" /protein_id="EOY11623.1" /db_xref="Phytozome:POPTR_0005s01960.1" /db_xref="TAIR:AT5G26910.3" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AF59" /translation="MEVERKRTKGGFFQLFDWNGKSRKKLFSNNSELSESRRGTPVEN LAKSLPHTTEGDEYNATSSSRRSCDFSSASSVTSDEGYGSRAPGVVARLMGLDSLPTL NVPEPSSTQYSGSCSLRASHYERSTPNLWNECQPTDYTNISNKLDRLSSNPIEPRFHK VQNRPIERFQTEILPPKSAKPIPITHHKLLSPIRSPGFIPTKNAAYIMEAAAKIIEAS PQTTSKGKGPSLGSSSVPLRIRDLKGKIEAAHKASRPQRPDEPSVSAMKPLKGQHKNK SHNKSDYTPTLRISRDSEKVSSNSLRNKGKSVSLAEQARVNVQRRDGSFSSSNGSSAS QKERNDAKRKQFSRSQADMQRTVEKGTSANRTNNVLRPNNQKQNCISTRDYSTSKTST LDQHARKARSMNGTIGRNRTLNKVTINSEPQSRKTGSVANDAAKELPMSRRKNLPKKK RPVNEDLASGETSSDTSSINYSEKSIKCNVATNGHLNRDAEKMKKSMDVVSFTFTSPI SRVAEKSSSFDSDPSGDNYLLYLKSSAFSSPGFNIIGGDSLSVLLEKKLQELTCGVES SNCNIIVDGTSASPASSLQNSVSSSGMVPTTLGGHHKRLQVDLDKDISYSSGDFDHSS MDTMGLDWRKKWQLSEETEEQNACSSSSSSEIGVGLDYRHPIPLSIFEPDVMSRSCSD SRNGTEGMKQFMLAQDQGASSWTPGSESLTEFGTELSDSASSTSVGEMGKKLLTSTSS SRDLKESTNWELDYLKMVLKDSELMFTEYALGRTEKVMTLNAFNQLEHRNETERIGED HDKLYQKLLLDCVSDCLESRCKQLFVGTCKGWVKWEKLIQKREWLAQELYKEIWGWES MGDTMVDDLVDKDMSTQHGRWLGFDLEAFEEGVEIEKSIFSSLVDDLVSDFLL" CDS join(39870540..39870642,39870761..39870816, 39870922..39872676,39873318..39873471,39873800..>39874251) /locus_tag="TCM_026745" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY11621.1" /db_xref="Phytozome:POPTR_0005s01960.1" /db_xref="TAIR:AT5G26910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AF59" /translation="MEVERKRTKGGFFQLFDWNGKSRKKLFSNNSELSEESRRGTPVE NLAKSLPHTTEGDEYNATSSSRRSCDFSSASSVTSDEGYGSRAPGVVARLMGLDSLPT LNVPEPSSTQYSGSCSLRASHYERSTPNLWNECQPTDYTNISNKLDRLSSNPIEPRFH KVQNRPIERFQTEILPPKSAKPIPITHHKLLSPIRSPGFIPTKNAAYIMEAAAKIIEA SPQTTSKGKGPSLGSSSVPLRIRDLKGKIEAAHKASRPQRPDEPSVSAMKPLKGQHKN KSHNKSDYTPTLRISRDSEKVSSNSLRNKGKSVSLAEQARVNVQRRDGSFSSSNGSSA SQKERNDAKRKQFSRSQADMQRTVEKGTSANRTNNVLRPNNQKQNCISTRDYSTSKTS TLDQHARKARSMNGTIGRNRTLNKVTINSEPQSRKTGSVANDAAKELPMSRRKNLPKK KRPVNEDLASGETSSDTSSINYSEKSIKCNVATNGHLNRDAEKMKKSMDVVSFTFTSP ISRVAEKSSSFDSDPSGDNYLLYLKSSAFSSPGFNIIGGDSLSVLLEKKLQELTCGVE SSNCNIIVDGTSASPASSLQNSVSSSGMVPTTLGGHHKRLQVDLDKDISYSSGDFDHS SMDTMGLDWRKKWQLSEETEEQNACSSSSSSEIGVGLDYRHPIPLSIFEPDVMSRSCS DSRNGTEGMKQFMLAQDQGASSWTPGSESLTEFGTELSDSASSTSVGEMGKKLLTSTS SSRDLKESTNWELDYLKMVLKDSELMFTEYALGRTEKVMTLNAFNQLEHRNETERIGE DHDKLYQKLLLDCVSDCLESRCKQLFVGTCKGWVKWEKLIQK" CDS join(39870540..39870642,39870764..39870816, 39870922..39872676,39873318..39873471,39873800..>39874095) /locus_tag="TCM_026745" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY11622.1" /db_xref="Phytozome:POPTR_0005s01960.1" /db_xref="TAIR:AT5G26910.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N4P5" /translation="MEVERKRTKGGFFQLFDWNGKSRKKLFSNNSELSESRRGTPVEN LAKSLPHTTEGDEYNATSSSRRSCDFSSASSVTSDEGYGSRAPGVVARLMGLDSLPTL NVPEPSSTQYSGSCSLRASHYERSTPNLWNECQPTDYTNISNKLDRLSSNPIEPRFHK VQNRPIERFQTEILPPKSAKPIPITHHKLLSPIRSPGFIPTKNAAYIMEAAAKIIEAS PQTTSKGKGPSLGSSSVPLRIRDLKGKIEAAHKASRPQRPDEPSVSAMKPLKGQHKNK SHNKSDYTPTLRISRDSEKVSSNSLRNKGKSVSLAEQARVNVQRRDGSFSSSNGSSAS QKERNDAKRKQFSRSQADMQRTVEKGTSANRTNNVLRPNNQKQNCISTRDYSTSKTST LDQHARKARSMNGTIGRNRTLNKVTINSEPQSRKTGSVANDAAKELPMSRRKNLPKKK RPVNEDLASGETSSDTSSINYSEKSIKCNVATNGHLNRDAEKMKKSMDVVSFTFTSPI SRVAEKSSSFDSDPSGDNYLLYLKSSAFSSPGFNIIGGDSLSVLLEKKLQELTCGVES SNCNIIVDGTSASPASSLQNSVSSSGMVPTTLGGHHKRLQVDLDKDISYSSGDFDHSS MDTMGLDWRKKWQLSEETEEQNACSSSSSSEIGVGLDYRHPIPLSIFEPDVMSRSCSD SRNGTEGMKQFMLAQDQGASSWTPGSESLTEFGTELSDSASSTSVGEMGKKLLTSTSS SRDLKESTNWELDYLKMVLKDSELMFTEYALGRTEKVMTLNAFNQLE" CDS join(39870540..39870642,39870764..39870816, 39870922..39872676,39873318..39873471,39873800..>39874095) /locus_tag="TCM_026745" /note="encoded by transcript variant 7; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY11626.1" /db_xref="Phytozome:POPTR_0005s01960.1" /db_xref="TAIR:AT5G26910.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N4P5" /translation="MEVERKRTKGGFFQLFDWNGKSRKKLFSNNSELSESRRGTPVEN LAKSLPHTTEGDEYNATSSSRRSCDFSSASSVTSDEGYGSRAPGVVARLMGLDSLPTL NVPEPSSTQYSGSCSLRASHYERSTPNLWNECQPTDYTNISNKLDRLSSNPIEPRFHK VQNRPIERFQTEILPPKSAKPIPITHHKLLSPIRSPGFIPTKNAAYIMEAAAKIIEAS PQTTSKGKGPSLGSSSVPLRIRDLKGKIEAAHKASRPQRPDEPSVSAMKPLKGQHKNK SHNKSDYTPTLRISRDSEKVSSNSLRNKGKSVSLAEQARVNVQRRDGSFSSSNGSSAS QKERNDAKRKQFSRSQADMQRTVEKGTSANRTNNVLRPNNQKQNCISTRDYSTSKTST LDQHARKARSMNGTIGRNRTLNKVTINSEPQSRKTGSVANDAAKELPMSRRKNLPKKK RPVNEDLASGETSSDTSSINYSEKSIKCNVATNGHLNRDAEKMKKSMDVVSFTFTSPI SRVAEKSSSFDSDPSGDNYLLYLKSSAFSSPGFNIIGGDSLSVLLEKKLQELTCGVES SNCNIIVDGTSASPASSLQNSVSSSGMVPTTLGGHHKRLQVDLDKDISYSSGDFDHSS MDTMGLDWRKKWQLSEETEEQNACSSSSSSEIGVGLDYRHPIPLSIFEPDVMSRSCSD SRNGTEGMKQFMLAQDQGASSWTPGSESLTEFGTELSDSASSTSVGEMGKKLLTSTSS SRDLKESTNWELDYLKMVLKDSELMFTEYALGRTEKVMTLNAFNQLE" CDS join(39870540..39870642,39870764..39870816, 39870922..39872676,39873318..39873471,39873826..39873860) /locus_tag="TCM_026745" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 5" /protein_id="EOY11624.1" /db_xref="Phytozome:POPTR_0005s01960.1" /db_xref="TAIR:AT5G26910.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N4P5" /translation="MEVERKRTKGGFFQLFDWNGKSRKKLFSNNSELSESRRGTPVEN LAKSLPHTTEGDEYNATSSSRRSCDFSSASSVTSDEGYGSRAPGVVARLMGLDSLPTL NVPEPSSTQYSGSCSLRASHYERSTPNLWNECQPTDYTNISNKLDRLSSNPIEPRFHK VQNRPIERFQTEILPPKSAKPIPITHHKLLSPIRSPGFIPTKNAAYIMEAAAKIIEAS PQTTSKGKGPSLGSSSVPLRIRDLKGKIEAAHKASRPQRPDEPSVSAMKPLKGQHKNK SHNKSDYTPTLRISRDSEKVSSNSLRNKGKSVSLAEQARVNVQRRDGSFSSSNGSSAS QKERNDAKRKQFSRSQADMQRTVEKGTSANRTNNVLRPNNQKQNCISTRDYSTSKTST LDQHARKARSMNGTIGRNRTLNKVTINSEPQSRKTGSVANDAAKELPMSRRKNLPKKK RPVNEDLASGETSSDTSSINYSEKSIKCNVATNGHLNRDAEKMKKSMDVVSFTFTSPI SRVAEKSSSFDSDPSGDNYLLYLKSSAFSSPGFNIIGGDSLSVLLEKKLQELTCGVES SNCNIIVDGTSASPASSLQNSVSSSGMVPTTLGGHHKRLQVDLDKDISYSSGDFDHSS MDTMGLDWRKKWQLSEETEEQNACSSSSSSEIGVGLDYRHPIPLSIFEPDVMSRSCSD SRNGTEGSRSIKLDPWK" CDS join(39870540..39870642,39870761..39870816, 39870922..39872676,39873318..39873471,39873826..>39873848) /locus_tag="TCM_026745" /note="encoded by transcript variant 6; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 6" /protein_id="EOY11625.1" /db_xref="Phytozome:POPTR_0005s01960.1" /db_xref="TAIR:AT5G26910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N4P5" /translation="MEVERKRTKGGFFQLFDWNGKSRKKLFSNNSELSEESRRGTPVE NLAKSLPHTTEGDEYNATSSSRRSCDFSSASSVTSDEGYGSRAPGVVARLMGLDSLPT LNVPEPSSTQYSGSCSLRASHYERSTPNLWNECQPTDYTNISNKLDRLSSNPIEPRFH KVQNRPIERFQTEILPPKSAKPIPITHHKLLSPIRSPGFIPTKNAAYIMEAAAKIIEA SPQTTSKGKGPSLGSSSVPLRIRDLKGKIEAAHKASRPQRPDEPSVSAMKPLKGQHKN KSHNKSDYTPTLRISRDSEKVSSNSLRNKGKSVSLAEQARVNVQRRDGSFSSSNGSSA SQKERNDAKRKQFSRSQADMQRTVEKGTSANRTNNVLRPNNQKQNCISTRDYSTSKTS TLDQHARKARSMNGTIGRNRTLNKVTINSEPQSRKTGSVANDAAKELPMSRRKNLPKK KRPVNEDLASGETSSDTSSINYSEKSIKCNVATNGHLNRDAEKMKKSMDVVSFTFTSP ISRVAEKSSSFDSDPSGDNYLLYLKSSAFSSPGFNIIGGDSLSVLLEKKLQELTCGVE SSNCNIIVDGTSASPASSLQNSVSSSGMVPTTLGGHHKRLQVDLDKDISYSSGDFDHS SMDTMGLDWRKKWQLSEETEEQNACSSSSSSEIGVGLDYRHPIPLSIFEPDVMSRSCS DSRNGTEGSRSIKLD" gene 39876328..39877827 /locus_tag="TCM_026746" /note="dbxref CacaoGD:Thecc1EG026746" mRNA 39876328..39877827 /locus_tag="TCM_026746" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s01170.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004772t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s01170.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g11990t1" CDS 39876418..39877587 /locus_tag="TCM_026746" /note="paralog of Thecc1EG004772t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11627.1" /db_xref="Phytozome:POPTR_0013s01170.1" /db_xref="TAIR:AT3G62630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N4P7" /translation="MEFQISDNNELNQNPISDLETELEMSSNGQIQDPHEPQVFPEDY DSTCSTPYVSAPSSPGRAPGPGPGSINGGFFYSAPASPMHFAMTSVSSMVSSTQPSSP DNSVPLGFEFEFSARFGSSGSGQTGSMSSADELFLNGQIRPMKLSTHLERPQFLAPLL DLEHEDEENEDNVDGKVRGRDLRLRDKSLRRRTRSMSPLRNASFALNIDDQSMCLDKD LGKKADSKNDEEMYNETSASMSASSSRSSSAGRSSKRWVFLKDFLRSKSEGRSNNKFW STISFSPAKEKKPGSTSSSVVQESKEKLSNVSIGGSENQRSHKNKPVNGIGKRRVPPS PHELHYTANRAQAEEMRKKTFLPYRQGLLGCLGFSSKGYGAMNGLARALNPVSSR" gene 39880648..39883287 /locus_tag="TCM_026747" /note="dbxref CacaoGD:Thecc1EG026747" mRNA join(39880648..39880829,39880931..39881011, 39881084..39881111,39881198..39881280,39881364..39881396, 39881942..39882020,39882133..39882185,39882581..39882641, 39882733..39882815,39883011..39883210) /locus_tag="TCM_026747" /product="C2H2 and C2HC zinc fingers superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031220001" /inference="similar to AA sequence:Phytozome:POPTR_0013s01160.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g12772t00001; inference alignment:Newbler:10:TSA:cgbaP2_g12772t00001" mRNA join(39880680..39880829,39880931..39881011, 39881084..39881111,39881198..39881280,39881361..39881396, 39881942..39882020,39882133..39882185,39882581..39882641, 39882731..39882815,39883011..39883287) /locus_tag="TCM_026747" /product="C2H2 and C2HC zinc fingers superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031220001" /inference="similar to AA sequence:Phytozome:POPTR_0013s01160.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12030t1; inference alignment:Newbler:10:TSA:cgbaP2_g12772t00001; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc192t2" CDS join(39880812..39880829,39880931..39881011, 39881084..39881111,39881198..39881280,39881364..39881396, 39881942..39882020,39882133..39882185,39882581..39882641, 39882733..39882815,39883011..39883100) /locus_tag="TCM_026747" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="C2H2 and C2HC zinc fingers superfamily protein isoform 1" /protein_id="EOY11628.1" /db_xref="Phytozome:POPTR_0013s01160.1" /db_xref="TAIR:AT3G05760.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q851A3" /translation="MASSNNALGVDNTFRKKFDREEYLQRAREREKQESEGRSKSKAK GPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDH INGKKHQRALGMSMRVERATLQQVQERFDQLKKRKAPGSFSEQDLDERIIKQQEEEEE RKRQRRERKKEKKKEKAAEEEPEIDPDVAAMMGFGGFRSSKK" CDS join(39880812..39880829,39880931..39881011, 39881084..39881111,39881198..39881280,39881361..39881396, 39881942..39882020,39882133..39882185,39882581..39882641, 39882731..39882815,39883011..39883065) /locus_tag="TCM_026747" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="C2H2 and C2HC zinc fingers superfamily protein isoform 2" /protein_id="EOY11629.1" /db_xref="Phytozome:POPTR_0013s01160.2" /db_xref="TAIR:AT3G05760.2" /db_xref="UniProtKB/TrEMBL:UniRef50_F4J8I3" /translation="MASSNNALGVDNTFRKKFDREEYLQRAREREKQESEGRSKSKAK GPPVQRKPLKHRDYEVDLESRLGKTQQVVTPVAPLSQQAGYYCSVCECVVKDSANYLD HINGKKHQRALGMSMRVERATLQQVQERFDQLKKRKAPGSFSEQEILMNGSSNSRKKR KSESDNDEKERKRKRKRKQQKRSLKLILMWQL" gene 39883695..39886000 /locus_tag="TCM_026748" /note="dbxref CacaoGD:Thecc1EG026748" mRNA 39883695..39886000 /locus_tag="TCM_026748" /product="Tetratricopeptide repeat (TPR)-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s01930.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004100t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s01930.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1676t1" CDS 39883770..39885224 /locus_tag="TCM_026748" /note="paralog of Thecc1EG004100t1" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein" /protein_id="EOY11630.1" /db_xref="Phytozome:POPTR_0005s01930.1" /db_xref="TAIR:AT1G09190.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80488" /translation="MSRASLELERKILRLLHGQKTRKTLREIHAHFLRQCLHQSNQIL SHFVSVCGHLNKMDYANLVFAQTHNPNILLFNSMIKGYSLNGPFEEAIALFSLLKTRG IWPDEYTFPPLLKACSGLGDVRVGQCTHGEVIKSGFERFGSVQIGVVELYSSSGRMEE AKKVFDRMCQRDVIVWNLMIRGFCKIGDVGIGLNLFRQMSERSVVSWNLMISCLAQSA RQDEALALFQEMRELGFQPDEATVVIVLPICAHLGAADVGQWIHSYAESSRLYQKVVS VGNALVDFYSKCGNLETALQIFKDMPCKYVVSWNVMISGLAFNGKGELGVKLFEEMMN KGEMPNDATFIGVLTCCAHAGLVEKGQELFASMSKIYYIDPKLEHYGCMVDLLARSGC VRMAYDLITSMHIAPNATLWGALLSACRTHGELQLAELAVKELMNLEPWNSGNYVLLS NIYAEEGRWDEVDKIRVLMREKSVKKAMGQSATG" gene 39886436..39887132 /locus_tag="TCM_026749" /note="dbxref CacaoGD:Thecc1EG026749" mRNA join(39886436..39886468,39886552..39886627, 39886706..39887132) /locus_tag="TCM_026749" /product="Heavy metal transport/detoxification superfamily protein" /inference="alignment:exonerate- protein:2:ricco:29777.m000272" /inference="similar to AA sequence:Phytozome:POPTR_0018s14710.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc2407t1" CDS join(39886463..39886468,39886552..39886627, 39886706..39886926) /locus_tag="TCM_026749" /codon_start=1 /product="Heavy metal transport/detoxification superfamily protein" /protein_id="EOY11631.1" /db_xref="Phytozome:POPTR_0018s14710.1" /translation="MEVVEFKVRLHCKSCEKAVRKSLLKINGVKCVEIDMMSSKITVL GYVDCKAVVKAIHKTGRRAEAWPSAAPSCRRPEDYFSPRLPKGFRCIIPRWGLPKV" gene complement(39887215..39888376) /locus_tag="TCM_026750" /note="dbxref CacaoGD:Thecc1EG026750" mRNA complement(join(39887215..39887536,39887760..39887985, 39888077..39888144,39888240..39888376)) /locus_tag="TCM_026750" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s01910.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021321t2" /inference="similar to AA sequence:Phytozome:POPTR_0005s01910.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2286t1_C1" CDS complement(join(39887415..39887536,39887760..39887985, 39888077..39888144,39888240..39888330)) /locus_tag="TCM_026750" /note="paralog of Thecc1EG021321t2" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11632.1" /db_xref="Phytozome:POPTR_0005s01910.1" /db_xref="TAIR:AT1G56320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9NGE8" /translation="MAAATSSKLKCFTCFFNLIFVAIFFSNMNSGKAQNLLPARSFAK AFFCFNNRYIYTGCDEAFRLSESGNLNVPREATNIFCTGPCLAETQLVLQCVDNVLSD FTFYNKATVRDIRDVLRAGCSYTSRRGNFDVENYFQGEISKSPGLREFMTSLSSLTLI IGFHILMI" gene complement(39889818..39891842) /locus_tag="TCM_026751" /note="dbxref CacaoGD:Thecc1EG026751" mRNA complement(join(39889818..39890248,39891049..39891180, 39891565..39891842)) /locus_tag="TCM_026751" /product="Secretion-associated RAS super family 2" /inference="alignment:exonerate- protein:2:ricco:29889.m003270" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021329t1" /inference="similar to AA sequence:Phytozome:GSVIVT01028107001" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g00241t00001" CDS complement(join(39889928..39890248,39891049..39891180, 39891565..39891693)) /locus_tag="TCM_026751" /note="paralog of Thecc1EG021329t1" /codon_start=1 /product="Secretion-associated RAS super family 2" /protein_id="EOY11633.1" /db_xref="Phytozome:GSVIVT01028107001" /db_xref="TAIR:AT4G02080.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O04267" /translation="MFFLDWFYGVLASLGLWQKDAKILFLGLDNAGKTTLLHMLKDER LVQHQPTQHPTSEELSIGQIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKER FAESKRELDALLSDEALANVPFLILGNKIDIPYAASEDELRHHLGLINFTTGKGKVNL GDSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK" gene 39892871..39894281 /locus_tag="TCM_026752" /note="dbxref CacaoGD:Thecc1EG026752" mRNA join(39892871..39893266,39893356..39893465, 39893583..39893695,39893825..39893948,39894066..39894281) /locus_tag="TCM_026752" /product="Adenine nucleotide alpha hydrolases-like superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30128.m008898" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004792t1" /inference="similar to AA sequence:ricco:30128.m008898" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00124t00002; inference alignment:Newbler:10:TSA:cgbaP2_g00124t00004" mRNA join(39892871..39893245,39893356..39893465, 39893583..39893695,39893825..39893948,39894066..39894281) /locus_tag="TCM_026752" /product="USP-like protein isoform 3" /inference="alignment:exonerate- protein:2:ricco:30128.m008898" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004792t1" /inference="similar to AA sequence:ricco:30128.m008898" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00124t00001; inference alignment:Newbler:10:TSA:cgbaP2_g00124t00004" mRNA join(39892995..39893245,39893356..39893465, 39893577..39893695,39893825..39893948,39894066..39894279) /locus_tag="TCM_026752" /product="USP-like protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30128.m008898" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004792t1" /inference="similar to AA sequence:ricco:30128.m008898" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g00124t00004" CDS join(39893068..39893266,39893356..39893465, 39893583..39893695,39893825..39893924) /locus_tag="TCM_026752" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30128.m008898; paralog of Thecc1EG004792t1" /codon_start=1 /product="Adenine nucleotide alpha hydrolases-like superfamily protein isoform 2" /protein_id="EOY11635.1" /db_xref="TAIR:AT3G62550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q07A28" /translation="MADVVPKERKILVAVDEGEESMYALSWCLKNVISQNSKDTLILL YAKPPRAVYSALDGTGSRSHLQGYLFSADILATMEKYSNDVAACVIEKAKRMCREQAD EVEVRVESGDPRDVICQVAEKINADVLVMGSHGYGLIKRAFLGSVSNHCAQNVKCPVL IVKKPKCSSSGTK" CDS join(39893068..39893245,39893356..39893465, 39893577..39893695,39893825..39893924) /locus_tag="TCM_026752" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30128.m008898; paralog of Thecc1EG004792t1" /codon_start=1 /product="USP-like protein isoform 1" /protein_id="EOY11634.1" /db_xref="TAIR:AT3G62550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q07A28" /translation="MADVVPKERKILVAVDEGEESMYALSWCLKNVISQNSKDTLILL YAKPPRAVYSALDGTGYLFSADILATMEKYSNDVAACVIEKAKRMCREQADEVKVEVR VESGDPRDVICQVAEKINADVLVMGSHGYGLIKRAFLGSVSNHCAQNVKCPVLIVKKP KCSSSGTK" CDS join(39893068..39893245,39893356..39893465, 39893583..39893695,39893825..39893924) /locus_tag="TCM_026752" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30128.m008898; paralog of Thecc1EG004792t1" /codon_start=1 /product="USP-like protein isoform 3" /protein_id="EOY11636.1" /db_xref="TAIR:AT3G62550.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q07A28" /translation="MADVVPKERKILVAVDEGEESMYALSWCLKNVISQNSKDTLILL YAKPPRAVYSALDGTGYLFSADILATMEKYSNDVAACVIEKAKRMCREQADEVEVRVE SGDPRDVICQVAEKINADVLVMGSHGYGLIKRAFLGSVSNHCAQNVKCPVLIVKKPKC SSSGTK" gene 39894473..39899700 /locus_tag="TCM_026753" /note="dbxref CacaoGD:Thecc1EG026753" mRNA join(39894473..39894907,39895616..39895837, 39895915..39896574,39896681..39897056,39897318..39897907, 39898085..39899206,39899288..39899700) /locus_tag="TCM_026753" /product="Histidine kinase cytokinin receptor, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s01100.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004796t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s01100.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2147t10" CDS join(39894896..39894907,39895616..39895837, 39895915..39896574,39896681..39897056,39897318..39897907, 39898085..39899206,39899288..39899497) /locus_tag="TCM_026753" /note="paralog of Thecc1EG004796t1" /codon_start=1 /product="Histidine kinase cytokinin receptor, putative" /protein_id="EOY11637.1" /db_xref="Phytozome:POPTR_0013s01100.1" /db_xref="TAIR:AT2G47430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I703" /translation="MDDMGICGYLTLKLCMLTKQTRNSVMSDSYVQDRKSFSGIEATS RLLLPLNTSALNLARSLSSILNGTELPFVAIQTKIAPILFVALSTIPHLAQISYIGLN GLIFSYYNDKDQKVAVFSNTSFSSNWYSMPVNRDTGMLYGEAVALKAVVSMNESWFQE SLNRTNGYCSLGRGWNNAQDSLFFTTVAMDGRGVISVGFPAEVVIDHFAALDFNGGDF HLATAEGDVIVQTRLPNTEIVVRNSTVSVQSLRPHGHQIRSVGNVSCVSVDGKLGSFN GRIMGEKYTFYCSTIEIAGVPSVYVLAYPSNKLVGLIQENSKLSLMLLKLMFISIAVA VGIFIFFTIRAAKREMFLCAAFIKQMNATQQAERKSMFKTQTYLRANHDIRSSLAAIT TLLDLCHDEVNPASELAENLAQTKTCAKDLLGILNSVLKMSKIEAGKMDLEEEEFNLA QLLEDVVDMFYPLGIKKGIDVVLDPCDGSIGKLSLVRGDRVKLKQILCNLLSNAIKYT SEGHVSVRAVVKKRSFEKKIIASNGNAVLKCLSQLFCKKEDYEDIDALHRAEQNLNKM EFEFEVDDTGKGIPKDKQASIYEEFFQVKETALAGGRGLEEEGCGLGLGIVQSIVRLM DGEIGIVEKEPGERGTCFRFTVLLTACQPELAEPLEDSPNGFHPHFSFIRNPATRSEG SHSHVILCIAGEERKRVLKRYIESLNIKVTLVKQGKSLHQELEKIKRKLYFSHCNHSG KPDLRLVDYLTKSASNSSDSGASDPHFGIKEGSDSVLPQYIKSNSRSVAAFTVVVIDS SAGNFSELCSAVASFRTDIPDSLCKVVWLDNPVTRTLLRDKQDARLIPPCDHLIYKPF HGSRLTQVLHLLPERKGTSHCNFPKLTNQTATLEAMHSANTNPSKETESGPSLQQMVT QKTDGKRMGKPLKGKKILVVEDDKLLRRLTVTSLEKLGAEVEVCINGKEALDEICKNL REKKEGNSSRSVRHDYVIMDCEMPVMDGYEATRLIRMEEARYGVHVPIIAVTAHAMPE EANKTMGAGMDFHLTKPLQVDKLLEVIQRIDSK" gene complement(39899614..39903391) /locus_tag="TCM_026754" /note="dbxref CacaoGD:Thecc1EG026754" mRNA complement(join(39899614..39900206,39900295..39900414, 39900500..39900529,39900627..39900674,39900756..39900851, 39900943..39901010,39901111..39901168,39901251..39901337, 39901429..39901476,39901585..39901641,39901724..39901982, 39902077..39902269,39902371..39902478,39903254..39903391)) /locus_tag="TCM_026754" /product="Calreticulin 1b isoform 1" /inference="alignment:exonerate- protein:2:ricco:30128.m008900" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025085t2" /inference="similar to AA sequence:Phytozome:POPTR_0013s01090.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.78 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07066t00001" CDS complement(join(39900195..39900206,39900295..39900414, 39900500..39900529,39900627..39900674,39900756..39900851, 39900943..39901010,39901111..39901168,39901251..39901337, 39901429..39901476,39901585..39901641,39901724..39901982, 39902077..39902269,39902371..39902478,39903254..39903353)) /locus_tag="TCM_026754" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG025085t2" /codon_start=1 /product="Calreticulin 1b isoform 1" /protein_id="EOY11638.1" /db_xref="Phytozome:POPTR_0013s01090.1" /db_xref="TAIR:AT1G09210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I529" /translation="MAIRERNPSVLCLIIVSLIAVTSAKVFFEERFEDGWENRWVKSD WKKDEKTAGEWNFTSGKWNGDPNDKGIQTSEDYRFYAISAEFPELNNKDKTLVFQFSV KHEQKLDCGGGYMKLLSGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILNYNETNH LIKKEVPCETDQLTHIYTFILRPDATYSILVDNVEKQTGSLYTDWDLLPPKKIKDPEA KKPEDWDDKEYIPDPEDKKPEGYDDIPKEIPDPDAKKPEDWDDDEDGEWTAPTIANPE YNGPWKPKKIKNPNYKGKWKAPLIDNPDFKDDPDIYVFPKLKYVGIELWQVKSGTLFD NVLVADDPEYAKTLAEETWGKQKDAEKAAFEEAEKKREEEESKDDPADSDVEDEDDDT DDAEGNESDSDTKSDASKESEEIKEETEEDVHDEL" mRNA complement(join(39900652..39900674,39900756..39900868, 39900943..39901010,39901111..39901168,39901251..39901337, 39901429..39901476,39901585..39901641,39901724..39901982, 39902077..39902269,39902371..39902478, 39903254..>39903351)) /locus_tag="TCM_026754" /product="Calreticulin 1b isoform 2" /inference="alignment:exonerate- protein:2:ricco:30128.m008900" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG025085t1" /inference="similar to AA sequence:ricco:30128.m008900" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial5; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc206t6; inference alignment:Newbler:10:TSA:cgbaB_g07066t00001" CDS complement(join(39900848..39900868,39900943..39901010, 39901111..39901168,39901251..39901337,39901429..39901476, 39901585..39901641,39901724..39901982,39902077..39902269, 39902371..39902478,39903254..>39903350)) /locus_tag="TCM_026754" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30128.m008900; paralog of Thecc1EG025085t1" /codon_start=1 /product="Calreticulin 1b isoform 2" /protein_id="EOY11639.1" /db_xref="TAIR:AT1G09210.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I529" /translation="AIRERNPSVLCLIIVSLIAVTSAKVFFEERFEDGWENRWVKSDW KKDEKTAGEWNFTSGKWNGDPNDKGIQTSEDYRFYAISAEFPELNNKDKTLVFQFSVK HEQKLDCGGGYMKLLSGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILNYNETNHL IKKEVPCETDQLTHIYTFILRPDATYSILVDNVEKQTGSLYTDWDLLPPKKIKDPEAK KPEDWDDKEYIPDPEDKKPEGYDDIPKEIPDPDAKKPEDWDDDEDGEWTAPTIANPEY NGPWKPKKIKNPNYKGKWKAPLIDNPDFKDDPDIYVFPKLKYVGIELWQMFVFVR" gene complement(39903766..39911718) /locus_tag="TCM_026755" /note="dbxref CacaoGD:Thecc1EG026755" mRNA complement(join(39903766..39903865,39904636..39905104, 39905179..39905238,39905409..39905819,39905906..39906236, 39906343..39906429,39906517..39906896,39907237..39907811, 39908654..39908932,39911119..39911718)) /locus_tag="TCM_026755" /product="Inorganic H pyrophosphatase family protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene31580" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027289t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s01080.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12200t2" CDS complement(join(39904898..39905104,39905179..39905238, 39905409..39905819,39905906..39906236,39906343..39906429, 39906517..39906896,39907237..39907811,39908654..39908932, 39911119..39911134)) /locus_tag="TCM_026755" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG027289t1" /codon_start=1 /product="Inorganic H pyrophosphatase family protein isoform 1" /protein_id="EOY11640.1" /db_xref="Phytozome:POPTR_0013s01080.1" /db_xref="TAIR:AT1G15690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P31414" /translation="MINGSEAKKSKVLKLLREFVEMSAMGEGLTQILIPVAALVGIGF ALFQWFLVSRVKVSSNDSSNEYKEKLIEADEEEEGIDNLEVSIKCAEIQHAISVGATS FLFTEYKYLGIFMGVFGAIIFLFLGSVRGFSTKSEPCTYNQGNTCKPALANALFSTIA FLLGALTSVLSGFLGMKIATYANARTTLEARKGVGKAFITAFRSGAVMGFLLAANGLF VLYVSINLFKLYYGDDWEGLYESITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGK VERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALFVASISSFGIGH DFTAMSYPLIISSMGIVVCLITTLFATDLFEIKNVSEIEPSLKRQLLISTVLMTAGIA VVSFFALPSEFTLYNFGTEKEVKNWHLFFCVAIGLWAGLVIGYTTEYYTSNAYSPVQD VADSCRTGAATNVIFGLALGYKSVIIPIFAIAIAIYVSFSLAAMYGIAVAALGMLSTI ATGLAIDAYGPISDNAGGIAEMAGMSHKIRERTDALDAAGNTTAAIGKGFAIGSAALV SLALFGAYVSRAGIKSVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVR RQFNTIPGLMEGRTKPDYANCVKISTDASLKEMIPPGALVMLTPLIAGTFFGVETLAG VLAGSLVSGVQVAISASNTGGAWDNAKKYIEAGASEHAKSLGPKGSDCHKAAVIGDTI GDPLKDTSGPSLNILIKLMAVESLVFAPFFAAHGGLLFKLL" mRNA complement(join(<39905773..39905797,39905906..39906236, 39906343..39906429,39906517..39906896,39907237..39907811, 39908654..39909147)) /locus_tag="TCM_026755" /product="Inorganic H pyrophosphatase family protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene31580" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027289t2" /inference="similar to AA sequence:Phytozome:POPTR_0013s01080.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc73t9; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12200t2" CDS complement(join(<39905774..39905797,39905906..39906236, 39906343..39906429,39906517..39906896,39907237..39907811, 39908654..39908885)) /locus_tag="TCM_026755" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG027289t2" /codon_start=1 /product="Inorganic H pyrophosphatase family protein isoform 2" /protein_id="EOY11641.1" /db_xref="Phytozome:POPTR_0013s01080.1" /db_xref="TAIR:AT1G15690.2" /db_xref="UniProtKB/TrEMBL:UniRef50_P31414" /translation="MSAMGEGLTQILIPVAALVGIGFALFQWFLVSRVKVSSNDSSNE YKEKLIEADEEEEGIDNLEVSIKCAEIQHAISVGATSFLFTEYKYLGIFMGVFGAIIF LFLGSVRGFSTKSEPCTYNQGNTCKPALANALFSTIAFLLGALTSVLSGFLGMKIATY ANARTTLEARKGVGKAFITAFRSGAVMGFLLAANGLFVLYVSINLFKLYYGDDWEGLY ESITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVG DNVGDIAGMGSDLFGSYAESSCAALFVASISSFGIGHDFTAMSYPLIISSMGIVVCLI TTLFATDLFEIKNVSEIEPSLKRQLLISTVLMTAGIAVVSFFALPSEFTLYNFGTEKE VKNWHLFFCVAIGLWAGLVIGYTTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGY KSVIIPIFAIAIAIYVSFSLAAMYGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAE MAGMSHKIRERTDALDAAGNTTAAIGKHSFLLLYS" gene complement(39910735..39914128) /locus_tag="TCM_026756" /note="dbxref CacaoGD:Thecc1EG026756" mRNA complement(join(39910735..39911263,39911450..39912151, 39912240..39913017,39913702..39913988)) /locus_tag="TCM_026756" /product="Pseudouridine synthase family protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene31580" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400004979" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:PASA:2:TSA:puevd3b025890t1a2; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1409t4_C1" mRNA complement(join(39910891..39911268,39912063..39912151, 39912240..39913017,39913702..39914128)) /locus_tag="TCM_026756" /product="Pseudouridine synthase family protein isoform 1" /inference="alignment:exonerate-protein:2:frave:gene31580" /inference="similar to AA sequence:frave:gene31580" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.74 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1409t4_C1" CDS complement(join(39912341..39913017,39913702..39914062)) /locus_tag="TCM_026756" /note="encoded by transcript variant 1; alternatively spliced; dbxref frave:gene31580" /codon_start=1 /product="Pseudouridine synthase family protein isoform 1" /protein_id="EOY11642.1" /db_xref="TAIR:AT1G56345.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I4S2" /translation="MPFFSLPQQSFFLCCPKLLSKFPKTLLFLCPKMSTNPNSHQNYP TPLSPPLPSISKDIELARAMTASSKSSLFELSRSDILYEDEWLIAVNKPQGIYCDSVL ASIPRFLSDSTVSDRLSDGNQASPFELHLANRLDRDTSGIMVITKSHKVAAALVKAFT NHMVHKTYVAFCIGSAPKSERITIKSGHGRSKFGAWRVYAAGDVGRKLPGGSIVRDMG TTFEVLSINGQQSYKEPSESVKDEETSVIVEEKAVIDVDAQKDEILVRAFPRSGRTHQ IRLHCQYLGIPIRGDVKYEGVYEWKGRRYDAHELHAESLSFQHPVTGFPVMIQAPLPL WASQALQPLTD" CDS complement(join(39912341..39913017,39913702..39913966)) /locus_tag="TCM_026756" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Pseudouridine synthase family protein isoform 2" /protein_id="EOY11643.1" /db_xref="Phytozome:PGSC0003DMP400004979" /db_xref="TAIR:AT1G56345.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I4S2" /translation="MSTNPNSHQNYPTPLSPPLPSISKDIELARAMTASSKSSLFELS RSDILYEDEWLIAVNKPQGIYCDSVLASIPRFLSDSTVSDRLSDGNQASPFELHLANR LDRDTSGIMVITKSHKVAAALVKAFTNHMVHKTYVAFCIGSAPKSERITIKSGHGRSK FGAWRVYAAGDVGRKLPGGSIVRDMGTTFEVLSINGQQSYKEPSESVKDEETSVIVEE KAVIDVDAQKDEILVRAFPRSGRTHQIRLHCQYLGIPIRGDVKYEGVYEWKGRRYDAH ELHAESLSFQHPVTGFPVMIQAPLPLWASQALQPLTD" gene 39914155..39918049 /locus_tag="TCM_026757" /note="dbxref CacaoGD:Thecc1EG026757" mRNA join(39914155..39914712,39915072..39915284, 39915720..39915821,39916029..39916166,39916482..39916786, 39916910..39917063,39917157..39918049) /locus_tag="TCM_026757" /product="Peptide chain release factor 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031232001" /inference="similar to AA sequence:Phytozome:POPTR_0013s01060.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12145t1" CDS join(39914269..39914712,39915072..39915284, 39915720..39915821,39916029..39916166,39916482..39916786, 39916910..39917063,39917157..39917291) /locus_tag="TCM_026757" /codon_start=1 /product="Peptide chain release factor 2" /protein_id="EOY11644.1" /db_xref="Phytozome:POPTR_0013s01060.1" /db_xref="TAIR:AT1G56350.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I6Z9" /translation="MPPFILKRSNKGSLLIFQYHRTKTRNLCSSQLVPNFLDSNQNHK VLDSGLSSILLKSTKNRSGSFCTLANSSLLSSQNLHFLYLNPKGWIFAREFGTQAAVE LCTSDGLTVDGIVGSKWMIVEESESDWKSHAAAIAQSIQVIKKRLQWKKLMVRLDLLS AELNKPDLWNDPVHAGKISREHGSLMGKMKVVKAFEQELLEHIDMIKLAREENDAELE SELMKALLRMRRDSKDKELEALLAGEHDSCSCYIEVQAGAGGTESMDWAAMVMQMYKT WAQRRGYGVTVMDEMPGEIAGIKRATIKVDGEYAFGYAKAEVGVHRLVRISPFDSGKR RHTSFAAVAVIPILGDGSTHVQINESDLRIERFRAGGAGGQHVNTTESAVRIVHIPTG VTATCQNERSQHQNKASAMAVLQSRLDQLEMARQAQMNAQHTQSLTEISWGNQIRTYV LHPYRMVKDLRTNYEVSDPDSVLEGDLDGFILSYLSSSLDKDEGEQ" gene 39918351..39920429 /locus_tag="TCM_026758" /note="dbxref CacaoGD:Thecc1EG026758" mRNA join(39918351..39918361,39918515..39918679, 39919333..39919448,39919679..39920429) /locus_tag="TCM_026758" /product="Antigenic heat-stable 120 kDa protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g28860.1" /inference="similar to AA sequence:Phytozome:Glyma10g28860.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Newbler:10:TSA:cgbaL_g14723t00001" CDS join(39918572..39918679,39919333..39919448, 39919679..39920018) /locus_tag="TCM_026758" /codon_start=1 /product="Antigenic heat-stable 120 kDa protein" /protein_id="EOY11645.1" /db_xref="Phytozome:Glyma10g28860.1" /db_xref="TAIR:AT1G56420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7UA25" /translation="MGSSSVITPEDVLESLMNDGTIDALRLKIINQLKANEELKNTTI RMAEQSKVLNTPGAEKQTKRELFDALRQELETPVLERASKSVWDLILDSNGLGKEISE TVERVFCKLSGREPPLFPHPNDESQPEKEADDEKGKGKEKENENEKENSNSKSKKRNF SEMNAEGSATEVAGKSSDTPAAPDDAT" gene complement(39921282..39921758) /locus_tag="TCM_026759" /note="dbxref CacaoGD:Thecc1EG026759" mRNA complement(39921282..39921758) /locus_tag="TCM_026759" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30128.m008905" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12113t1" CDS complement(39921356..39921706) /locus_tag="TCM_026759" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11646.1" /translation="MLLSNSPTGFSNGVAEGNLSREGNPANYTSNVTAFYGQDMVDNP AVIMSNNLSNSNGTLISPHAACWPQPLVPNSNVDLQPGNNSFNSSVVPDLAMQYFSNP HPFNEFNDWAWKSG" gene complement(39922308..39923181) /locus_tag="TCM_026760" /note="dbxref CacaoGD:Thecc1EG026760" mRNA complement(join(39922308..39922426,39922617..39922723, 39922826..39922999,39923103..39923181)) /locus_tag="TCM_026760" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30128.m008905" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG027550t1" /inference="similar to AA sequence:ricco:30128.m008905" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12117t1" CDS complement(join(39922420..39922426,39922617..39922723, 39922826..39922999,39923103..39923153)) /locus_tag="TCM_026760" /note="dbxref ricco:30128.m008905; paralog of Thecc1EG027550t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11647.1" /db_xref="TAIR:AT2G24100.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RFI7" /translation="MKAENFPIALLRVGSWQRVSRNEGDLVAKCYFAKRKLVWEFLEH GLKSKIEIQWSDILSLKTVIQEDKPGILEIELNQPPSFHHEIDPQPRKHTQWRMVSDF TGGQAPTFSP" mobile_element complement(39923838..39923900) /note="source:scaffold_5_CACTA_0612 10614 10674" /mobile_element_type="transposon:TIR/CACTA" mobile_element 39926722..39926834 /note="source:CACAO_M_E58230_F143_scaffold_9 1652 1719" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(39926762..39926811) /note="source:CACAO_M_S_E144734_F98_scaffold_10 519 568" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(39932323..39939868) /locus_tag="TCM_026761" /note="dbxref CacaoGD:Thecc1EG026761" mRNA complement(join(39932323..39932679,39934097..39934186, 39934275..39934492,39934579..39934688,39934772..39934939, 39935010..39935109,39939425..39939868)) /locus_tag="TCM_026761" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.20 coverage" CDS complement(join(39932513..39932679,39934097..39934186, 39934275..39934492,39934579..39934688,39934772..39934939, 39935010..39935090)) /locus_tag="TCM_026761" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11648.1" /translation="MSHRYQPKNTQQPGTFPISSLEIGSWKKQAGGSVILTAGIQFGW QNIVWEIIELGQKRISFKWTDIEKLKVFNEGGLSGLAIKLNCRPKFSCCHGNFPNTRK SMWITTEDFTDGEAERQWHIVKCSPMAIEKYVQRLLQADSRLLGLSIEGSAATGFNQN ENQNLEERVCYNVDASPSHTTTNSLGQQIQSSGLTSPSEVNESENKSFDPADIYKVDF DYDLASSIRVYKETLIQLYILYCMPKAKPMLGQYGGSFHCFERQKGDSNNEEMFWQLH E" gene complement(39939878..39949611) /locus_tag="TCM_026762" /note="dbxref CacaoGD:Thecc1EG026762" mRNA complement(join(39939878..39940937,39941148..39941253, 39941481..39941999,39942335..39942568,39942743..39942844, 39943388..39943555,39943681..39943794,39943978..39944082, 39944176..39944306,39945218..39945342,39945557..39945728, 39945981..39946020,39946210..39946296,39946396..39946461, 39946650..39946748,39947056..39947178,39947304..39947345, 39947486..39947551,39947687..39947872,39948311..39948376, 39948798..39949611)) /locus_tag="TCM_026762" /product="Lon protease 1" /inference="alignment:exonerate- protein:2:Phytozome:Sb02g043690.1" /inference="similar to AA sequence:frave:gene31585" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12158t2" CDS complement(join(39940798..39940937,39941148..39941253, 39941481..39941999,39942335..39942568,39942743..39942844, 39943388..39943555,39943681..39943794,39943978..39944082, 39944176..39944306,39945218..39945342,39945557..39945728, 39945981..39946020,39946210..39946296,39946396..39946461, 39946650..39946748,39947056..39947178,39947304..39947345, 39947486..39947551,39947687..39947872,39948311..39948376, 39948798..39949118)) /locus_tag="TCM_026762" /note="dbxref frave:gene31585" /codon_start=1 /product="Lon protease 1" /protein_id="EOY11649.1" /db_xref="TAIR:AT5G26860.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M9L7" /translation="MLKLLSSSSSRVHCLPTATPSLLVKPDSNSVFHAVGRLTGLTRR SPTNSLFRAFFCSESSDGSGSNSGSEPVVEVEVKGVESESNGSDSKASSAIVPTYPRP EDYLTVLALPLPHRPLFPGFYMPIYVKDPKVLAALQESRKRQAPYAGAFLLKDEPGTE SSPSSETEKSVYDIKGKELFNRLHEVGTLAQISSIQGDQVILIGHRRLRITEMVSEDP LTVKVDHLKEKPYDKDDDVIKATSFEVISTLRDVLKTSSLWRDHVQTYSQHIGDFNFP RLADFGAAISGANKLQCQQVLEELDVHKRLQLTLELVKKEMEISKIQESIAKAIEEKI SGEQRRYLLNEQLKAIKKELGLETDDKTALSAKFRERLEPNREKCPPHVLQVIEEELT KLQLLEASSSEFNVTRNYLDWLTVLPWGNYSDENFDVLRAQTILDEDHYGLTDVKERI LEFIAVGKLRGTSQGKIICLSGPPGVGKTSIGHSIARALNRKFFRFSVGGLSDVAEIK GHRRTYIGAMPGKMVQCLKNVGTANPLVLIDEIDKLGRGHAGDPASALLELLDPEQNA NFLDHYLDVPIDLSKVLFVCTANVVDNIPNPLLDRMEVIAIAGYITDEKMHIARDYLE KTARETCGIKPEQVEITDAALLALIENYCREAGVRNLQKHIEKIYRKIALRLVREGSS NESAISGEVVQPAEATAEVVDESDQHAGAKKTGVEVESVGDNSHEHTSETFVQVDTVQ TSDQPKDSKDATDAEKLQEAEVTKAVEKVLVDNSNLADFVGKPVFHAERIYDQTPVGV VMGLAWTAMGGSTLYIETTQVEQREGKGALHCTGQLGDVMKESAQIAHTLARAILQEK EPDNPFFSNSELHLHVPAGATPKDGPSAGCTMITSMLSLAMKKPVRKDLAMTGEVTLT GRILPIGGVKEKTIAARRSEVKTIIFPSANRRDYDELAPNVKEGKYQSRAQICDHCSS TKSGFPTDTGNNKRQKFVVNQNICDRSIFLL" gene 39949776..39953106 /locus_tag="TCM_026763" /note="dbxref CacaoGD:Thecc1EG026763" mRNA join(39949776..39950480,39950576..39950665, 39950765..39952400,39952513..39952726) /locus_tag="TCM_026763" /product="Pentatricopeptide repeat (PPR-like) superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031237001" /inference="similar to AA sequence:Phytozome:Glyma11g11000.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc423t6" CDS join(39950182..39950480,39950576..39950665, 39950765..39952139) /locus_tag="TCM_026763" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat (PPR-like) superfamily protein, putative isoform 1" /protein_id="EOY11650.1" /db_xref="Phytozome:Glyma11g11000.1" /db_xref="TAIR:AT1G09820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I4S5" /translation="MYIHSSFRFFSEEPCFQPRLSLMHPRSILFDGKFRLGNIFPGNK HALRLFSSDNIPSPSITELLSKQRWNKLKSHLQNVSPSTLLQQLLDSKTDPDLTLRYF RWSEKEFNLSHSLELSCKLLHSLANAKSFCANSIIADMLVLAYVENMKTRLGFEAFKR AGDYAFKLSVTSCNPLLSALVKENEIGDVDYVYKEMIRRRVEVNVISFNIIINGMCKV GKLNKARDAIQDMKAWGFLPDVFTYNALINGYCKKGGIGKMYKADAILKEMIESEVRP NEITFNILIDGFCKDENISAAMRVFEEMRTQGLKPTVVTYNNLINGLCLEGRLDEAIG LLDEMVGLGLKPNVVTYNVLINGFGKKGKMKEATDLFDNIVKKGIAPTVITYNTLIDA YCKDGRMEDAFALHKSMVDRGIFRDVSTYNCLITGLCREGNIPVVRKLINEMINNGLK ADVVTYNILIDAFCKEGESRKAARVLDEMVKIGLRPNHVTYNTLMLGHCREGNLRAAL NVRTQMEKDGRRANVVTYNVLIKGFCKKGKLEDANGLLNEMLEKGLIPNRTTYEIVKE EMVEKGFVPDIEGHLYSISAS" mRNA join(39950636..39952400,39952569..39953106) /locus_tag="TCM_026763" /product="Pentatricopeptide repeat (PPR-like) superfamily protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene14873" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031237001" /inference="similar to AA sequence:Phytozome:POPTR_0005s01750.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1556t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc423t6; inference alignment:Newbler:10:TSA:cgbaP2_g08186t00001" mRNA join(39950636..39952390,39952511..39953106) /locus_tag="TCM_026763" /product="Pentatricopeptide repeat (PPR-like) superfamily protein isoform 2" /inference="alignment:exonerate-protein:2:frave:gene14873" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031237001" /inference="similar to AA sequence:Phytozome:POPTR_0005s01750.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1556t7; alternateUTRof:Thecc1EG026763t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc423t6; inference alignment:Newbler:10:TSA:cgbaP2_g08186t00001" CDS 39950793..39952139 /locus_tag="TCM_026763" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat (PPR-like) superfamily protein isoform 2" /protein_id="EOY11651.1" /db_xref="Phytozome:POPTR_0005s01750.1" /db_xref="TAIR:AT1G09820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I4S5" /translation="MLVLAYVENMKTRLGFEAFKRAGDYAFKLSVTSCNPLLSALVKE NEIGDVDYVYKEMIRRRVEVNVISFNIIINGMCKVGKLNKARDAIQDMKAWGFLPDVF TYNALINGYCKKGGIGKMYKADAILKEMIESEVRPNEITFNILIDGFCKDENISAAMR VFEEMRTQGLKPTVVTYNNLINGLCLEGRLDEAIGLLDEMVGLGLKPNVVTYNVLING FGKKGKMKEATDLFDNIVKKGIAPTVITYNTLIDAYCKDGRMEDAFALHKSMVDRGIF RDVSTYNCLITGLCREGNIPVVRKLINEMINNGLKADVVTYNILIDAFCKEGESRKAA RVLDEMVKIGLRPNHVTYNTLMLGHCREGNLRAALNVRTQMEKDGRRANVVTYNVLIK GFCKKGKLEDANGLLNEMLEKGLIPNRTTYEIVKEEMVEKGFVPDIEGHLYSISAS" CDS 39950793..39952139 /locus_tag="TCM_026763" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat (PPR-like) superfamily protein isoform 2" /protein_id="EOY11652.1" /db_xref="Phytozome:POPTR_0005s01750.1" /db_xref="TAIR:AT1G09820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I4S5" /translation="MLVLAYVENMKTRLGFEAFKRAGDYAFKLSVTSCNPLLSALVKE NEIGDVDYVYKEMIRRRVEVNVISFNIIINGMCKVGKLNKARDAIQDMKAWGFLPDVF TYNALINGYCKKGGIGKMYKADAILKEMIESEVRPNEITFNILIDGFCKDENISAAMR VFEEMRTQGLKPTVVTYNNLINGLCLEGRLDEAIGLLDEMVGLGLKPNVVTYNVLING FGKKGKMKEATDLFDNIVKKGIAPTVITYNTLIDAYCKDGRMEDAFALHKSMVDRGIF RDVSTYNCLITGLCREGNIPVVRKLINEMINNGLKADVVTYNILIDAFCKEGESRKAA RVLDEMVKIGLRPNHVTYNTLMLGHCREGNLRAALNVRTQMEKDGRRANVVTYNVLIK GFCKKGKLEDANGLLNEMLEKGLIPNRTTYEIVKEEMVEKGFVPDIEGHLYSISAS" gene 39953095..39954633 /locus_tag="TCM_026764" /note="dbxref CacaoGD:Thecc1EG026764" mRNA join(39953095..39953449,39953889..39954633) /locus_tag="TCM_026764" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s01740.1" /inference="similar to AA sequence:Phytozome:POPTR_0005s01740.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12150t1" CDS join(39953380..39953449,39953889..39954580) /locus_tag="TCM_026764" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11653.1" /db_xref="Phytozome:POPTR_0005s01740.1" /db_xref="TAIR:AT1G56423.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I543" /translation="MDFQKKRVQLLLCIAGVIILSITAEKCRQLVGEEASSQSGKFTI LNCFDMGSGSVACAVKEGVKLYFYNIRSAHVERARNVAIEKAIEDAVSQGMSAKDAAK LAQIEGKKAAKLATRQAKRIIGPIISSGWDFFEAIYYGGTIVEGFLRGTGTLFGAYGG GFLGEQRLGRVGYLVGSHLGSWVGGRIGLMVYDVVNGVHYLLQFVQMEENENHEAPVY EKSEVSEDSYAYENSDIYESPPDESSESEESSSFW" mobile_element 39958598..39958858 /note="source:CACAO_Again_on_E92_scaffold_3 115 367" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(39958631..39959687) /note="source:CACAO_Again_on_E81_scaffold_3 299 1554" /mobile_element_type="transposon:TIR/hAT" mobile_element 39959128..39960200 /note="source:CACAO_hAT_E1198_scaffold_3 4494 5599" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(39960208..39960250) /note="source:CACAO_hAT_E2557_scaffold_6 1 43" /mobile_element_type="transposon:TIR/hAT" mobile_element 39960225..39960269 /note="source:scaffold_9_CACTA_0943 4682 4726" /mobile_element_type="transposon:TIR/CACTA" gene 39961031..39962592 /locus_tag="TCM_026765" /note="dbxref CacaoGD:Thecc1EG026765" mRNA 39961031..39962592 /locus_tag="TCM_026765" /product="Nicotianamine synthase 3" /inference="alignment:exonerate- protein:2:ricco:30128.m008909" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021349t1" /inference="similar to AA sequence:ricco:30128.m008909" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12143t1" CDS 39961273..39962223 /locus_tag="TCM_026765" /note="dbxref ricco:30128.m008909; paralog of Thecc1EG021349t1" /codon_start=1 /product="Nicotianamine synthase 3" /protein_id="EOY11654.1" /db_xref="TAIR:AT1G09240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9C7X5" /translation="MVCEKDPLVQKVCELYEQISGLESLKPSRDVNMLFTQLVVTCMP PSPIDVTKLCKRIQEIRSKLIRLCGEAEGLLESHFSTILGSYENPPHHLNIFPYYSNY LKLSLLEFNILTKHCSNLPSKVAFVGSGPLPLTSIVLASFHLTTTSFHNYDIDPSANS KALQLVSSNPDLSERMFFHTTDIMDVTNALKDYDVVFLAALVGMDKDEKVRVIDHLAK YMAPGAVLMLRSAHGARAFLYPVVDPCDLRGFEVLSIFHPTDEVINSVVIARKFPMTK HSADQQQPMKLPNKFFDIEMFNPLNHVNLMEELDIQEQLS" mobile_element complement(39963490..39963592) /note="source:CACAO_M_E427_F230_scaffold_1 1079 1160" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(39964767..39969817) /locus_tag="TCM_026767" /note="dbxref CacaoGD:Thecc1EG026767" mRNA complement(join(39964767..39965636,39966496..39966743, 39966823..39966868,39966935..39966994,39968119..39968174, 39968311..39968455,39968648..39968758,39968904..39969280, 39969670..39969817)) /locus_tag="TCM_026767" /product="KNOTTED1-like homeobox gene 6 isoform 1" /inference="alignment:exonerate- protein:2:ricco:30128.m008910" /inference="similar to AA sequence:Phytozome:POPTR_0005s01720.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g04035t00001" mRNA complement(join(39964869..39965636,39966496..39966743, 39968311..39968455,39968648..39968758,39968904..39969580)) /locus_tag="TCM_026767" /product="KNOTTED1-like homeobox gene 6 isoform 2" /inference="alignment:exonerate- protein:2:ricco:30128.m008910" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010433t1" /inference="similar to AA sequence:ricco:30128.m008910" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1043t1; inference alignment:Newbler:10:TSA:cgbaP1_g04035t00001" CDS complement(join(39965439..39965636,39966496..39966743, 39968311..39968455,39968648..39968758,39968904..39969164)) /locus_tag="TCM_026767" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30128.m008910; paralog of Thecc1EG010433t1" /codon_start=1 /product="KNOTTED1-like homeobox gene 6 isoform 2" /protein_id="EOY11656.1" /db_xref="TAIR:AT1G23380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C9E736" /translation="MEDMYRLDNPAISRSNDIVRVDNFAAANFSAAVTTDFLSPVDTI LQFDHQAADTDVTGSDMSDLIKTQIASHPRYPNLVSAYIECQKIGAPPELVSLLEEIG RENHPIRGCSEIGADPELDEFMESYCEVLHRYKEELSKPFDEATTFLSNIESQLSNLC KGALTKTLDYRSDEAAGTSEEELSGGEVEASESQESAVARPSQDIKGMLMRKYSGYLS SLRKEFLKKRKKGKLPKDARMTLLEWWNNHYRWPYPTEEEKLQLSEITGLDQKQINNW FINQRKRHWKPSEDMKFALFEGVAGNVGGPVYLDAGVGTGSDNI" CDS complement(join(39965439..39965636,39966496..39966743, 39966823..39966868,39966935..39966994,39968119..39968174, 39968311..39968455,39968648..39968758,39968904..39969164)) /locus_tag="TCM_026767" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="KNOTTED1-like homeobox gene 6 isoform 1" /protein_id="EOY11655.1" /db_xref="Phytozome:POPTR_0005s01720.1" /db_xref="TAIR:AT1G23380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C9E736" /translation="MEDMYRLDNPAISRSNDIVRVDNFAAANFSAAVTTDFLSPVDTI LQFDHQAADTDVTGSDMSDLIKTQIASHPRYPNLVSAYIECQKIGAPPELVSLLEEIG RENHPIRGCSEIGADPELDEFMESYCEVLHRYKEELSKPFDEATTFLSNIESQLSNLC KGALTKTLDYRSVNVVVEDSNEFQSPATTVHSGRQLSRQTNFGLGFAYRLPFVHGEFC LTIKPKCSNEAAGTSEEELSGGEVEASESQESAVARPSQDIKGMLMRKYSGYLSSLRK EFLKKRKKGKLPKDARMTLLEWWNNHYRWPYPTEEEKLQLSEITGLDQKQINNWFINQ RKRHWKPSEDMKFALFEGVAGNVGGPVYLDAGVGTGSDNI" mobile_element complement(39965521..39965614) /note="source:CACAO_on_E446_scaffold_2 12 105" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 39971357..39971372 /note="source:INTACT242_F12_scaffold_1-int 2693 2785" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(39971373..39971440) /note="source:CACAO_Again_on_E207_scaffold_9 1023 1090" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(39971378..39971390) /note="source:CACAO_M_E3248_F5_scaffold_1 3665 3736" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 39971391..39971457 /note="source:scaffold_1_CACTA_0006 8449 8515" /mobile_element_type="transposon:TIR/CACTA" gene complement(39973589..39982015) /locus_tag="TCM_026768" /note="dbxref CacaoGD:Thecc1EG026768" mRNA complement(join(39973589..39974527,39974852..39974957, 39975205..39975414,39975542..39975679,39975892..39976032, 39976117..39976308,39976457..39976581,39976676..39976754, 39977040..39977189,39977291..39977698,39977923..39978072, 39978159..39978442,39978540..39978733,39978876..39979075, 39979249..39979296,39979504..39979632,39980179..39980293, 39980416..39980531,39980645..39980719,39980994..39981130, 39981594..39981998)) /locus_tag="TCM_026768" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s00990.1" /inference="similar to AA sequence:Phytozome:GSVIVT01031243001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12533t3" CDS complement(join(39974463..39974527,39974852..39974957, 39975205..39975414,39975542..39975679,39975892..39976032, 39976117..39976308,39976457..39976581,39976676..39976754, 39977040..39977189,39977291..39977698,39977923..39978072, 39978159..39978442,39978540..39978733,39978876..39979075, 39979249..39979296,39979504..39979632,39980179..39980293, 39980416..39980531,39980645..39980719,39980994..39981128)) /locus_tag="TCM_026768" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY11657.1" /db_xref="Phytozome:GSVIVT01031243001" /db_xref="TAIR:AT5G26850.4" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I6Z2" /translation="MGFISRKIFPACGSMCVCCPALRSRSRQPVKRYKKLLSEIFPKS PDAPPNERKIAKLCEYAAKNPFRIPKIAKYLEERCYKELRHEHIKFINIVTEAYHKLL CMCKEQMAYFAVNLLNVVGELLDNSKQDAMRILGCQTLTKFIYSQADGTYTHNIEKFV PKVCKLSREDGEEHQRRCLRASSLQCLSAMVWFMAQYSYIFATLDEMVHATLDNYELD THAGDDNERGEPHHNWVDEVVRCEGRGAIVARDASPSNMIIRPQPEKKDPSLLTREET ETPKVWAQICIQRMVELAKESTTLRQILDPMFVYFDSRQHWVSQQGLAMVVLSDMSYW EASGDQQLILAAVIRHLDHKNVAHDPQLKSYIVQVAAALARQIRSRGVLAEIGFVSDL CRHLRKSFQANLESVGEQELDLNILLQNSIEDCLLEIAKGIDDAQTLFNMMAISLEKL PSSGVVARATIGSLMILAHMISLALVSSRLQQVFPEALLVQLMKAMLHPNVEARVGAH QIFSALLIPSSNRPRHEVASMRSGYVYEPRRWRSNNASAFSSISALLEKLRREKDGIK MEKNSYCSHDDLKGKDNVEEDWKQGHVLKSSPNIYSITSIIDRTAAPNMVEAEPYIMK LTEDQIMQLLSAFWIQATLPDNLPSNIEAISHSFVLTLISLRLKNINDSLVVRFFQLP LSLKNISLDPSNGMLTPALQRSIFMLSMGMLMFVAKIHQIPDLNDLIKSIVPFDADPY LGISEDLQVFLRPQADVRGYGSVTDNQLASSLLMELRDKLDESNKVMMDILVQNLSTV TELEIDDLTKQLFEPFTPDDAFMFGPRSILDLDHDEMISQSKESLSFDEDVQTSSLLE DDARSEASVLDLSRFIPKVPASPSISHVISIGQLLESALEVAGQVAATSVSTSPLPFD TMASRCEAFGTGTRKKLSNWLAHENHQNGAADKFLPAVLADDRHMTLRKITSEGAFNG PVSRLDPCLAMRLPPASPFDNFLKAAGVAHIDIAELDEIILQIVFGG" mRNA complement(join(39974570..39974957,39975205..39975414, 39975542..39975679,39975892..39976032,39976117..39976308, 39976457..39976581,39976676..39976754,39977040..39977189, 39977291..39977698,39977923..39978072,39978159..39978442, 39978540..39978733,39978876..39979075,39979249..39979296, 39979504..39979632,39980179..39980293,39980416..39980531, 39980645..39980719,39980994..39981130,39981806..39981941)) /locus_tag="TCM_026768" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s00990.1" /inference="similar to AA sequence:Phytozome:GSVIVT01031243001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12533t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12533t3; inference alignment:Newbler:10:TSA:cgbaP1_g12448t00001" CDS complement(join(39974844..39974957,39975205..39975414, 39975542..39975679,39975892..39976032,39976117..39976308, 39976457..39976581,39976676..39976754,39977040..39977189, 39977291..39977698,39977923..39978072,39978159..39978442, 39978540..39978733,39978876..39979075,39979249..39979296, 39979504..39979632,39980179..39980293,39980416..39980531, 39980645..39980719,39980994..39981128)) /locus_tag="TCM_026768" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY11658.1" /db_xref="Phytozome:GSVIVT01031243001" /db_xref="TAIR:AT5G26850.4" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I6Z2" /translation="MGFISRKIFPACGSMCVCCPALRSRSRQPVKRYKKLLSEIFPKS PDAPPNERKIAKLCEYAAKNPFRIPKIAKYLEERCYKELRHEHIKFINIVTEAYHKLL CMCKEQMAYFAVNLLNVVGELLDNSKQDAMRILGCQTLTKFIYSQADGTYTHNIEKFV PKVCKLSREDGEEHQRRCLRASSLQCLSAMVWFMAQYSYIFATLDEMVHATLDNYELD THAGDDNERGEPHHNWVDEVVRCEGRGAIVARDASPSNMIIRPQPEKKDPSLLTREET ETPKVWAQICIQRMVELAKESTTLRQILDPMFVYFDSRQHWVSQQGLAMVVLSDMSYW EASGDQQLILAAVIRHLDHKNVAHDPQLKSYIVQVAAALARQIRSRGVLAEIGFVSDL CRHLRKSFQANLESVGEQELDLNILLQNSIEDCLLEIAKGIDDAQTLFNMMAISLEKL PSSGVVARATIGSLMILAHMISLALVSSRLQQVFPEALLVQLMKAMLHPNVEARVGAH QIFSALLIPSSNRPRHEVASMRSGYVYEPRRWRSNNASAFSSISALLEKLRREKDGIK MEKNSYCSHDDLKGKDNVEEDWKQGHVLKSSPNIYSITSIIDRTAAPNMVEAEPYIMK LTEDQIMQLLSAFWIQATLPDNLPSNIEAISHSFVLTLISLRLKNINDSLVVRFFQLP LSLKNISLDPSNGMLTPALQRSIFMLSMGMLMFVAKIHQIPDLNDLIKSIVPFDADPY LGISEDLQVFLRPQADVRGYGSVTDNQLASSLLMELRDKLDESNKVMMDILVQNLSTV TELEIDDLTKQLFEPFTPDDAFMFGPRSILDLDHDEMISQSKESLSFDEDVQTSSLLE DDARSEASVLDLSRFIPKVPASPSISHVISIGQLLESALEVAGQVAATSVSTSPLPFD TMASRCEAFGTGTRKKLSNWLAHENHQNGAADKFLPAVLADDRHMTLRKITSEGAFNG PVSRLDPCLAMRLPPASPFDNFLKAAGC" mRNA complement(join(<39975293..39975414,39975542..39975679, 39975892..39976032,39976117..39976308,39976457..39976581, 39976676..39976754,39977040..39977189,39977291..39977698, 39977923..39978072,39978159..39978442,39978540..39978733, 39978876..39979075,39979249..39979295,39980415..39980531, 39980645..39980719,39980994..39981130,39981806..39982015)) /locus_tag="TCM_026768" /product="Uncharacterized protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s00990.1" /inference="similar to AA sequence:Phytozome:GSVIVT01031243001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.89 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc157t16; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12533t3" CDS complement(join(<39975295..39975414,39975542..39975679, 39975892..39976032,39976117..39976308,39976457..39976581, 39976676..39976754,39977040..39977189,39977291..39977698, 39977923..39978072,39978159..39978442,39978540..39978733, 39978876..39979075,39979249..39979287)) /locus_tag="TCM_026768" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Uncharacterized protein isoform 3" /protein_id="EOY11659.1" /db_xref="Phytozome:GSVIVT01031243001" /db_xref="TAIR:AT5G26850.4" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I6Z2" /translation="MAQYSYIFATLDEMVHATLDNYELDTHAGDDNERGEPHHNWVDE VVRCEGRGAIVARDASPSNMIIRPQPEKKDPSLLTREETETPKVWAQICIQRMVELAK ESTTLRQILDPMFVYFDSRQHWVSQQGLAMVVLSDMSYWEASGDQQLILAAVIRHLDH KNVAHDPQLKSYIVQVAAALARQIRSRGVLAEIGFVSDLCRHLRKSFQANLESVGEQE LDLNILLQNSIEDCLLEIAKGIDDAQTLFNMMAISLEKLPSSGVVARATIGSLMILAH MISLALVSSRLQQVFPEALLVQLMKAMLHPNVEARVGAHQIFSALLIPSSNRPRHEVA SMRSGYVYEPRRWRSNNASAFSSISALLEKLRREKDGIKMEKNSYCSHDDLKGKDNVE EDWKQGHVLKSSPNIYSITSIIDRTAAPNMVEAEPYIMKLTEDQIMQLLSAFWIQATL PDNLPSNIEAISHSFVLTLISLRLKNINDSLVVRFFQLPLSLKNISLDPSNGMLTPAL QRSIFMLSMGMLMFVAKIHQIPDLNDLIKSIVPFDADPYLGISEDLQVFLRPQADVRG YGSVTDNQLASSLLMELRDKLDESNKVMMDILVQNLSTVTELEIDDLTKQLFEPFTPD DAFMFGPRSILDLDHDEMISQSKESLSFDEDVQTSSLLEDDARSEASVLDLSRFIPKV PASPSISHVISIGQLLESALEVAGQVAATSVSTSPLPFDTMASRCEAFGTGTRKKLSN " gene complement(39985984..39990544) /locus_tag="TCM_026769" /note="dbxref CacaoGD:Thecc1EG026769" mRNA complement(join(39985984..39986537,39986684..39986781, 39986886..39986980,39987139..39987321,39988402..39988560, 39988872..39988954,39989062..39989183,39989370..39989494, 39989591..39989758,39989906..39990004,39990396..39990544)) /locus_tag="TCM_026769" /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031244001" /inference="similar to AA sequence:Phytozome:GSVIVT01031244001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:PASA:2:TSA:puevd3b025904t1a3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12160t3" mRNA complement(join(39985984..39986537,39986684..39986781, 39986886..39986980,39987139..39987321,39988402..39988560, 39988872..39988954,39989062..39989183,39989370..39989494, 39989591..39989758,39989906..39990544)) /locus_tag="TCM_026769" /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031244001" /inference="similar to AA sequence:Phytozome:POPTR_0005s01710.1" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:PASA:2:TSA:puevd3b025904t1a4; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12160t3" mRNA complement(join(39985984..39986537,39986684..39986781, 39986886..39986980,39987139..39987321,39988402..39988560, 39988872..39988954,39989062..39989183,39989370..39989494, 39989591..39989755,39989906..39990004,39990396..39990526)) /locus_tag="TCM_026769" /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031244001" /inference="similar to AA sequence:Phytozome:GSVIVT01031244001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12160t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12160t3" mRNA complement(join(39985984..39986537,39986684..39986781, 39986886..39986980,39987139..39987321,39987740..39987880, 39988402..39988560,39988872..39988954,39989062..39989183, 39989370..39989494,39989591..39989755,39989906..39990004, 39990396..39990526)) /locus_tag="TCM_026769" /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031244001" /inference="similar to AA sequence:Phytozome:GSVIVT01031244001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12160t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12160t3" CDS complement(join(39986434..39986537,39986684..39986781, 39986886..39986980,39987139..39987321,39988402..39988560, 39988872..39988954,39989062..39989183,39989370..39989494, 39989591..39989755,39989906..39990004,39990396..39990428)) /locus_tag="TCM_026769" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 4" /protein_id="EOY11663.1" /db_xref="Phytozome:GSVIVT01031244001" /db_xref="TAIR:AT1G56440.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N4R4" /translation="MASKHSRDQALDFQGFLNNLQDWELSLKEKDKIMKSQASDKEQL TNEKGRPTGKSSLIDSSTTSSRQYDYLQNYDKFNSLSSSFVTEENMPDAASEKELGNE YFKQKKFKEAIDCYSRSIGLSPTAVAHANRAMAYLKIKKFQEAEDDCTEALNLDDRYI KAYSRRATARKELGKLKESIEDTEFALRLEPNNQEIKKQHAEFKSLYEKEILQKASGV LRKSMQEAQEVGKSETKENGLGMHSASNSTQRTGVATVQGYQTKKNNRTRKPELKASV QELASLAATRAMAEAAKNISPPNTAYQFEVSWRALSGDRALQAHLLKVTSPSALPQIF KNALSASMLVDIIKCVATFFREEVDLAIKYLENLTKVPRFDMLIMCLSSTEKADLLKV WDDVFCNEATPIEWAEILDNLRSVYCLKR" CDS complement(join(39986434..39986537,39986684..39986781, 39986886..39986980,39987139..39987321,39987740..39987880, 39988402..39988560,39988872..39988954,39989062..39989183, 39989370..39989494,39989591..39989755,39989906..39990004, 39990396..39990428)) /locus_tag="TCM_026769" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 1" /protein_id="EOY11660.1" /db_xref="Phytozome:GSVIVT01031244001" /db_xref="TAIR:AT1G56440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I4S9" /translation="MASKHSRDQALDFQGFLNNLQDWELSLKEKDKIMKSQASDKEQL TNEKGRPTGKSSLIDSSTTSSRQYDYLQNYDKFNSLSSSFVTEENMPDAASEKELGNE YFKQKKFKEAIDCYSRSIGLSPTAVAHANRAMAYLKIKKFQEAEDDCTEALNLDDRYI KAYSRRATARKELGKLKESIEDTEFALRLEPNNQEIKKQHAEFKSLYEKEILQKASGV LRKSMQEAQEVGKSETKENGLGMHSASNSTQRTGVATVQGYQTKVSEYDKQKKPEKGS VTSEGIGDRNTLAGSRKDGTQLDSGIVGLESIKKNNRTRKPELKASVQELASLAATRA MAEAAKNISPPNTAYQFEVSWRALSGDRALQAHLLKVTSPSALPQIFKNALSASMLVD IIKCVATFFREEVDLAIKYLENLTKVPRFDMLIMCLSSTEKADLLKVWDDVFCNEATP IEWAEILDNLRSVYCLKR" CDS complement(join(39986434..39986537,39986684..39986781, 39986886..39986980,39987139..39987321,39988402..39988560, 39988872..39988954,39989062..39989183,39989370..39989494, 39989591..39989758,39989906..39990004,39990396..39990428)) /locus_tag="TCM_026769" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 2" /protein_id="EOY11661.1" /db_xref="Phytozome:GSVIVT01031244001" /db_xref="TAIR:AT1G56440.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N4R4" /translation="MASKHSRDQALDFQGFLNNLQDWELSLKEKDKIMKSQASDKEQL KTNEKGRPTGKSSLIDSSTTSSRQYDYLQNYDKFNSLSSSFVTEENMPDAASEKELGN EYFKQKKFKEAIDCYSRSIGLSPTAVAHANRAMAYLKIKKFQEAEDDCTEALNLDDRY IKAYSRRATARKELGKLKESIEDTEFALRLEPNNQEIKKQHAEFKSLYEKEILQKASG VLRKSMQEAQEVGKSETKENGLGMHSASNSTQRTGVATVQGYQTKKNNRTRKPELKAS VQELASLAATRAMAEAAKNISPPNTAYQFEVSWRALSGDRALQAHLLKVTSPSALPQI FKNALSASMLVDIIKCVATFFREEVDLAIKYLENLTKVPRFDMLIMCLSSTEKADLLK VWDDVFCNEATPIEWAEILDNLRSVYCLKR" CDS complement(join(39986434..39986537,39986684..39986781, 39986886..39986980,39987139..39987321,39988402..39988560, 39988872..39988954,39989062..39989183,39989370..39989494, 39989591..39989758,39989906..39989938)) /locus_tag="TCM_026769" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 5" /protein_id="EOY11664.1" /db_xref="Phytozome:POPTR_0005s01710.1" /db_xref="TAIR:AT1G56440.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N4R4" /translation="MKSQASDKEQLKTNEKGRPTGKSSLIDSSTTSSRQYDYLQNYDK FNSLSSSFVTEENMPDAASEKELGNEYFKQKKFKEAIDCYSRSIGLSPTAVAHANRAM AYLKIKKFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDTEFALRLEPN NQEIKKQHAEFKSLYEKEILQKASGVLRKSMQEAQEVGKSETKENGLGMHSASNSTQR TGVATVQGYQTKKNNRTRKPELKASVQELASLAATRAMAEAAKNISPPNTAYQFEVSW RALSGDRALQAHLLKVTSPSALPQIFKNALSASMLVDIIKCVATFFREEVDLAIKYLE NLTKVPRFDMLIMCLSSTEKADLLKVWDDVFCNEATPIEWAEILDNLRSVYCLKR" mRNA complement(join(<39986509..39986537,39986684..39986781, 39986886..39986980,39987139..39987321,39987740..39987880, 39988402..39988560,39988872..39988954,39989062..39989183, 39989370..39989494,39989591..39989758,39989906..39990229)) /locus_tag="TCM_026769" /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031244001" /inference="similar to AA sequence:Phytozome:POPTR_0005s01710.1" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is strong, protein is partial3; similar to RNA sequence, EST 0.81 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc525t6_C2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12160t3" CDS complement(join(<39986509..39986537,39986684..39986781, 39986886..39986980,39987139..39987321,39987740..39987880, 39988402..39988560,39988872..39988954,39989062..39989183, 39989370..39989494,39989591..39989758,39989906..39989938)) /locus_tag="TCM_026769" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Tetratricopeptide repeat-like superfamily protein, putative isoform 3" /protein_id="EOY11662.1" /db_xref="Phytozome:POPTR_0005s01710.1" /db_xref="TAIR:AT1G56440.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N4R4" /translation="MKSQASDKEQLKTNEKGRPTGKSSLIDSSTTSSRQYDYLQNYDK FNSLSSSFVTEENMPDAASEKELGNEYFKQKKFKEAIDCYSRSIGLSPTAVAHANRAM AYLKIKKFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDTEFALRLEPN NQEIKKQHAEFKSLYEKEILQKASGVLRKSMQEAQEVGKSETKENGLGMHSASNSTQR TGVATVQGYQTKVSEYDKQKKPEKGSVTSEGIGDRNTLAGSRKDGTQLDSGIVGLESI KKNNRTRKPELKASVQELASLAATRAMAEAAKNISPPNTAYQFEVSWRALSGDRALQA HLLKVTSPSALPQIFKNALSASMLVDIIKCVATFFREEVDLAIKYLENLTKVPRFDML IMCLSSTEKADLLKVWDDVF" gene complement(39990909..39995081) /locus_tag="TCM_026770" /note="dbxref CacaoGD:Thecc1EG026770" mRNA complement(join(39990909..39991523,39991814..39991941, 39992031..39992120,39992302..39992402,39992515..39993184, 39993616..39993972,39994091..39994354,39994907..39995081)) /locus_tag="TCM_026770" /product="HIT zinc finger,PAPA-1-like conserved region, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031244001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004823t4" /inference="similar to AA sequence:Phytozome:POPTR_0013s00970.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04860t00001" CDS complement(join(39991379..39991523,39991814..39991941, 39992031..39992120,39992302..39992402,39992515..39993184, 39993616..39993972,39994091..39994243)) /locus_tag="TCM_026770" /note="paralog of Thecc1EG004823t4" /codon_start=1 /product="HIT zinc finger,PAPA-1-like conserved region, putative" /protein_id="EOY11665.1" /db_xref="Phytozome:POPTR_0013s00970.1" /db_xref="TAIR:AT1G56460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I6Z0" /translation="MEGFGGLGFSNVSNATRKRRSNTSRRPRSESQPQSELHDFSSLS STPPSDNNLANVEDGAYGESDEASNDDSFQGSNVQRHGGVDSKRSSEGVLAPTNWKST SMVGSFGIVSDGQGNEKKVKKVKLKVGGVIRTIDANTVSDGASGVGSSSTKSSHFSDA PRSMRKSIIKDNSDDHSLTSEKESSLRGVPWKDFPKGRLGVRQVDYSRGRIPAETTNE TDKHEPVRKSKRVPKKRSLEGVLDDAEVDDEIRYLEKVKTTRVTADYDVEHGEDGGRK QRKISKVVNRNVGGLYVLDVEDYGSSRMGKEAKKSRSGRTSEDTDYMEEDEESVSDVE PENRRKRAKMEIVDFLGDSKKEMTVTTRQRALQAGKHISSSFGVSPIEFPNGLPPAPP KKQKEKLSEVEQQLKKAEAAQRRRMQVEKAARESEAEAIRKILGQDSSRKKREDKIKK RQEEMAQEKVANSMILASDFVRWVMGPSGTVVTFPDEVGLPSIFDPKPCSYPPPREKC AVPSCTNPYKYRDSKSKLPLCSLRCYKAIHKKMSPLAAC" gene 39995288..39999118 /locus_tag="TCM_026771" /note="dbxref CacaoGD:Thecc1EG026771" mRNA join(39995288..39995441,39995579..39995643, 39995745..39995821,39996784..39996913,39997076..39997235, 39997333..39997518,39997856..39998254,39999093..39999118) /locus_tag="TCM_026771" /product="20S proteasome beta subunit G1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400014198" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400014198" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Newbler:10:TSA:cgbaB_g00270t00001_C1" CDS join(39995436..39995441,39995579..39995643, 39995745..39995821,39996784..39996913,39997076..39997235, 39997333..39997518,39997856..39997969) /locus_tag="TCM_026771" /codon_start=1 /product="20S proteasome beta subunit G1" /protein_id="EOY11666.1" /db_xref="Phytozome:PGSC0003DMP400014198" /db_xref="TAIR:AT1G56450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q7DLR9" /translation="MNFMDSKQPESGLLGPESDSQRTLYPYVTGTSVVALKYKDGILM AADMGGSYGSTLRYKSVERMKPIGKHSLLGASGEISDFQEILRFLDELILYDNMWDDG NSLGPKEVHNYLTRVMYNRRNKFNPLWNSLVLGGVKNGQKYLGTVSMIGVNFEDNHVA TGFGNHLARPILRQEWHENLSFEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGMT ISQPYSLKTHWELSAFQNPTQGAVGSW" mobile_element complement(39998295..39998353) /note="source:scaffold_3_CACTA_0390 1965 2023" /mobile_element_type="transposon:TIR/CACTA" gene complement(39999121..40005354) /locus_tag="TCM_026772" /note="dbxref CacaoGD:Thecc1EG026772" mRNA complement(join(39999121..39999852,39999939..40000043, 40000243..40000652,40000737..40000830,40000921..40001077, 40001179..40001345,40001495..40001560,40001622..40002179, 40003140..40003491,40004687..40005354)) /locus_tag="TCM_026772" /product="Galactose oxidase/kelch repeat superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s01600.1" /inference="similar to AA sequence:Phytozome:GSVIVT01031248001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12177t2" mRNA complement(join(39999377..39999852,39999939..40000043, 40000243..40000652,40000737..40000827,40000921..40001077, 40001179..40001345,40001495..40001560,40001652..40002179, 40003140..40003555)) /locus_tag="TCM_026772" /product="Galactose oxidase/kelch repeat superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g41600.1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s01600.1" /inference="similar to AA sequence:Phytozome:GSVIVT01031248001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12177t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12177t2" mRNA complement(join(39999377..39999852,39999939..40000652, 40000737..40000827,40000921..40001077,40001179..40001345, 40001495..40001560,40001652..40002179,40003140..40003555)) /locus_tag="TCM_026772" /product="Galactose oxidase/kelch repeat superfamily protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma19g41600.1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s01600.1" /inference="similar to AA sequence:Phytozome:GSVIVT01031248001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2226t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12177t2" CDS complement(join(39999556..39999852,39999939..40000043, 40000243..40000652,40000737..40000830,40000921..40001077, 40001179..40001345,40001495..40001560,40001622..40002179, 40003140..40003491,40004687..40004766)) /locus_tag="TCM_026772" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Galactose oxidase/kelch repeat superfamily protein, putative isoform 1" /protein_id="EOY11667.1" /db_xref="Phytozome:GSVIVT01031248001" /db_xref="TAIR:AT1G18610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I6Y9" /translation="MLCFCSPVRVFVVSHDIFTYLLGKRKGDIDLKAPIFSCLLTLIV DISLGLFMSSFDPLFLSSACFIIVKHCVEVELKLSQRRQRPLKERAKKRIHHTHKKMG SLGAETAKKKAMWLYPKVSGFNPSERWGHSACYSNGVVYVFGGCCGGLHFGDVLMLNL NTMVWNTLVTVGQGPGPRDSHSAVLVGTKMMVFGGTNGSKKVNDLHVLDLASKEWIRP QCNGAAPSPRESHTATLIGEDKVVIFGGSGEGEANYLNDLYVLDLRTMRWTSPQVRGH IPVPRDSHSAVAIGNKLVVYGGDCGDRYHGDVDVFDMDTSTWSRVLISLSWSHNLAVQ GSLPGVRAGHAAVNIGTKVLIIGGVGDKHYYNDVWVLDVNACSWAQLDICGQQPQGRF SHTAVFSESDIAIYGGCGEDERPINELLVLQLGAQHPNGRYNISMCKTFGSHWNQEKR RFLRVAPNNLQKTIYFGDNDIARQGAHEPAQEAKHSSQLNSDTSNPKRRRTANSKAWE VESEQEEHSLSLSQHSSPSQSDQEQAPAQKPTDSTGSEGLNLFKQFHHIPNNFQPNNV PNNHKETRYMVHKTQQDLQFIREHQNLQKPEQYLHVVHPGRQGTQYLAGEQKHLDAGP IHNLLGAEVRGKVDAAFDSGFLMTATVNGKIFRGVLFAPGLGVISRGPMHAQSPASTS QVAAAAQPYLSSSNSEPYKSSQPPTMRIVPESGHSSRTAQVNRPNSVTRATSSAAKDP KLRSDLRDVVLTLGGPGTSHV" CDS complement(join(39999556..39999852,39999939..40000043, 40000243..40000652,40000737..40000827,40000921..40001077, 40001179..40001345,40001495..40001560,40001652..40002179, 40003140..40003418)) /locus_tag="TCM_026772" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Galactose oxidase/kelch repeat superfamily protein, putative isoform 2" /protein_id="EOY11668.1" /db_xref="Phytozome:GSVIVT01031248001" /db_xref="TAIR:AT1G18610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I6Y9" /translation="MSSFDPLFLSSACFIIVKHCVEVELKLSQRRQRPLKERAKKRIH HTHKKMGSLGAETAKKKAMWLYPKVSGFNPSERWGHSACYSNGVVYVFGGCCGGLHFG DVLMLNLNTMVWNTLVTVGQGPGPRDSHSAVLVGTKMMVFGGTNGSKKVNDLHVLDLA SKEWIRPQCNGAAPSPRESHTATLIGEDKVVIFGGSGEGEANYLNDLYVLDLRTMRWT SPQVRGHIPVPRDSHSAVAIGNKLVVYGGDCGDRYHGDVDVFDMDTSTWSRLAVQGSL PGVRAGHAAVNIGTKVLIIGGVGDKHYYNDVWVLDVNACSWAQLDICGQQPQGRFSHT AVFSESDIAIYGGCGEDERPINELLVLQLGAQHPNGRYNISMCKTFGSHWNQEKRRFL RVAPNNLKTIYFGDNDIARQGAHEPAQEAKHSSQLNSDTSNPKRRRTANSKAWEVESE QEEHSLSLSQHSSPSQSDQEQAPAQKPTDSTGSEGLNLFKQFHHIPNNFQPNNVPNNH KETRYMVHKTQQDLQFIREHQNLQKPEQYLHVVHPGRQGTQYLAGEQKHLDAGPIHNL LGAEVRGKVDAAFDSGFLMTATVNGKIFRGVLFAPGLGVISRGPMHAQSPASTSQVAA AAQPYLSSSNSEPYKSSQPPTMRIVPESGHSSRTAQVNRPNSVTRATSSAAKDPKLRS DLRDVVLTLGGPGTSHV" CDS complement(join(40000168..40000652,40000737..40000827, 40000921..40001077,40001179..40001345,40001495..40001560, 40001652..40002179,40003140..40003418)) /locus_tag="TCM_026772" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Galactose oxidase/kelch repeat superfamily protein, putative isoform 3" /protein_id="EOY11669.1" /db_xref="Phytozome:GSVIVT01031248001" /db_xref="TAIR:AT1G18610.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I6Y9" /translation="MSSFDPLFLSSACFIIVKHCVEVELKLSQRRQRPLKERAKKRIH HTHKKMGSLGAETAKKKAMWLYPKVSGFNPSERWGHSACYSNGVVYVFGGCCGGLHFG DVLMLNLNTMVWNTLVTVGQGPGPRDSHSAVLVGTKMMVFGGTNGSKKVNDLHVLDLA SKEWIRPQCNGAAPSPRESHTATLIGEDKVVIFGGSGEGEANYLNDLYVLDLRTMRWT SPQVRGHIPVPRDSHSAVAIGNKLVVYGGDCGDRYHGDVDVFDMDTSTWSRLAVQGSL PGVRAGHAAVNIGTKVLIIGGVGDKHYYNDVWVLDVNACSWAQLDICGQQPQGRFSHT AVFSESDIAIYGGCGEDERPINELLVLQLGAQHPNGRYNISMCKTFGSHWNQEKRRFL RVAPNNLKTIYFGDNDIARQGAHEPAQEAKHSSQLNSDTSNPKRRRTANSKAWEVESE QEEHSLSLSQHSSPSQSDQEQAPAQKPTDSTGSEGLNLFKQFHHIPNNFQPNNVPNNH KETRYMVHKTQQDLQFIREHQNLQKPEQYLHVVHPGRQGTQYLAGEQKHLDAGPIHNL VKHQFFGSKAYNILHLMECLNFLV" gene complement(40002151..40011091) /locus_tag="TCM_026774" /note="dbxref CacaoGD:Thecc1EG026774" mRNA complement(join(40002151..40002179,40006204..40006300, 40006474..40006774,40007233..40007346,40007426..40007532, 40007891..40008037,40008151..40008268,40008356..40008457, 40008699..40008773,40008888..40009064,40009154..40009243, 40009326..40009450,40009770..40009833,40009946..40010171, 40010376..40010708,40010799..40011077)) /locus_tag="TCM_026774" /product="Ferroportin protein family isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s01590.1" /inference="similar to AA sequence:Phytozome:POPTR_0005s01590.3" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1407t10; alternateUTRof:Thecc1EG026774t1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1407t10" mRNA complement(join(40002151..40002179,40006204..40006300, 40006474..40006774,40007233..40007346,40007426..40007532, 40007962..40008037,40008151..40008268,40008356..40008457, 40008699..40008773,40008888..40009064,40009154..40009243, 40009326..40009450,40009770..40009833,40009946..40010171, 40010376..40010823)) /locus_tag="TCM_026774" /product="Iron-regulated protein 3 isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s01590.1" /inference="similar to AA sequence:Phytozome:POPTR_0005s01590.3" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1407t6; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1407t10" mRNA complement(join(40002151..40002179,40006204..40006300, 40006474..40006774,40007233..40007346,40007426..40008037, 40008151..40008268,40008356..40008457,40008699..40008773, 40008888..40009064,40009154..40009243,40009326..40009450, 40009770..40009833,40009946..40010171,40010376..40010823)) /locus_tag="TCM_026774" /product="Iron-regulated protein 3 isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s01590.1" /inference="similar to AA sequence:Phytozome:POPTR_0005s01590.3" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1407t9; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1407t10" gene 40004912..40005448 /locus_tag="TCM_026773" /note="dbxref CacaoGD:Thecc1EG026773" mRNA join(40004912..40004937,40005140..40005448) /locus_tag="TCM_026773" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc3276t1_C1" CDS 40005153..40005311 /locus_tag="TCM_026773" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11674.1" /translation="MENSKGIVLFGFMGKYVCFGLGVWGKKSFEVRVILLLSLMKSQQ PWMAKSLV" mRNA complement(join(40005941..40006300,40006474..40006774, 40007233..40007346,40007426..40007532,40007891..40008037, 40008151..40008268,40008356..40008457,40008699..40008773, 40008888..40009064,40009154..40009243,40009326..40009450, 40009770..40009833,40009946..40010171,40010376..40011091)) /locus_tag="TCM_026774" /product="Ferroportin protein family isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s01590.1" /inference="similar to AA sequence:Phytozome:POPTR_0005s01590.3" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1407t10" CDS complement(join(40006475..40006774,40007233..40007346, 40007426..40007532,40007891..40008037,40008151..40008268, 40008356..40008457,40008699..40008773,40008888..40009064, 40009154..40009243,40009326..40009450,40009770..40009833, 40009946..40010171,40010376..40010542)) /locus_tag="TCM_026774" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Ferroportin protein family isoform 1" /protein_id="EOY11670.1" /db_xref="Phytozome:POPTR_0005s01590.3" /db_xref="TAIR:AT5G26820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N487" /translation="MAIVAVTNSQLSFNLFNLSVTRREASISRQAASRIRHRFSSSRW LNLNSPSTTRHSYSFRSLKSRCSITNTDVQFNHVATEDEVPEDISATEIGCCCSISIV QLKPDVLETESLSILTGDTYVDSLLTTLPVLSEEEQKALAATPAHPEGLYAFYASCLA GNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFTKLVIIVGGPLVGKLMDHSPRVPSYI FLNVVQAAAQLLSASMIIHAHMVSPASASSVLRHPWFAVLVLAGAIERLSGVALGVAM ERDWVVLLAGINRPIALAQANAVLNRINLLCEIAGTLLFGILLSKYDPVTCLKFAAGL MMGSLPVMISLTWLTNKLSTGVLDRARCSQSCCRTSDEGQLPDADNFVNTGLEAIKLG WREYIQQPVLPASLAYVLLYLNVVLTPGSLMTAFLTQRGLNPSVIGSFSGLCAFMGVG ATFLSATLVRRFGILKAGAVGLIFQASLLTIAVAVYQSGSLSQKGPLLFFLCLIVLSR FGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLAESVMLGVAIIANDVSHFGFLA MLSLLSAVGAAWMFCRWLLNPTEEQRNLFSFDPQFQL" CDS complement(join(40006475..40006774,40007233..40007346, 40007426..40007532,40007891..40008037,40008151..40008268, 40008356..40008457,40008699..40008773,40008888..40009064, 40009154..40009243,40009326..40009450,40009770..40009833, 40009946..40010171,40010376..40010542)) /locus_tag="TCM_026774" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Ferroportin protein family isoform 1" /protein_id="EOY11671.1" /db_xref="Phytozome:POPTR_0005s01590.3" /db_xref="TAIR:AT5G26820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N487" /translation="MAIVAVTNSQLSFNLFNLSVTRREASISRQAASRIRHRFSSSRW LNLNSPSTTRHSYSFRSLKSRCSITNTDVQFNHVATEDEVPEDISATEIGCCCSISIV QLKPDVLETESLSILTGDTYVDSLLTTLPVLSEEEQKALAATPAHPEGLYAFYASCLA GNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFTKLVIIVGGPLVGKLMDHSPRVPSYI FLNVVQAAAQLLSASMIIHAHMVSPASASSVLRHPWFAVLVLAGAIERLSGVALGVAM ERDWVVLLAGINRPIALAQANAVLNRINLLCEIAGTLLFGILLSKYDPVTCLKFAAGL MMGSLPVMISLTWLTNKLSTGVLDRARCSQSCCRTSDEGQLPDADNFVNTGLEAIKLG WREYIQQPVLPASLAYVLLYLNVVLTPGSLMTAFLTQRGLNPSVIGSFSGLCAFMGVG ATFLSATLVRRFGILKAGAVGLIFQASLLTIAVAVYQSGSLSQKGPLLFFLCLIVLSR FGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLAESVMLGVAIIANDVSHFGFLA MLSLLSAVGAAWMFCRWLLNPTEEQRNLFSFDPQFQL" CDS complement(join(40007502..40007532,40007962..40008037, 40008151..40008268,40008356..40008457,40008699..40008773, 40008888..40009064,40009154..40009243,40009326..40009450, 40009770..40009833,40009946..40010171,40010376..40010542)) /locus_tag="TCM_026774" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Iron-regulated protein 3 isoform 3" /protein_id="EOY11672.1" /db_xref="Phytozome:POPTR_0005s01590.3" /db_xref="TAIR:AT5G26820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N487" /translation="MAIVAVTNSQLSFNLFNLSVTRREASISRQAASRIRHRFSSSRW LNLNSPSTTRHSYSFRSLKSRCSITNTDVQFNHVATEDEVPEDISATEIGCCCSISIV QLKPDVLETESLSILTGDTYVDSLLTTLPVLSEEEQKALAATPAHPEGLYAFYASCLA GNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFTKLVIIVGGPLVGKLMDHSPRVPSYI FLNVVQAAAQLLSASMIIHAHMVSPASASSVLRHPWFAVLVLAGAIERLSGVALGVAM ERDWVVLLAGINRPIALAQANAVLNRINLLCEIAGTLLFGILLSKYDPVTCLKFAAGL MMGSLPVMISLTWLTNKLSTGVLDRARCSQSCCRTSDEGQLPDADNFVNTGLEAIKLG WREYIQQPVLPASLAFKSICYWEF" CDS complement(join(40007694..40008037,40008151..40008268, 40008356..40008457,40008699..40008773,40008888..40009064, 40009154..40009243,40009326..40009450,40009770..40009833, 40009946..40010171,40010376..40010542)) /locus_tag="TCM_026774" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Iron-regulated protein 3 isoform 4" /protein_id="EOY11673.1" /db_xref="Phytozome:POPTR_0005s01590.3" /db_xref="TAIR:AT5G26820.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N487" /translation="MAIVAVTNSQLSFNLFNLSVTRREASISRQAASRIRHRFSSSRW LNLNSPSTTRHSYSFRSLKSRCSITNTDVQFNHVATEDEVPEDISATEIGCCCSISIV QLKPDVLETESLSILTGDTYVDSLLTTLPVLSEEEQKALAATPAHPEGLYAFYASCLA GNLVEQLWNFAWPSAIALLHPSLLPVAVMGFFTKLVIIVGGPLVGKLMDHSPRVPSYI FLNVVQAAAQLLSASMIIHAHMVSPASASSVLRHPWFAVLVLAGAIERLSGVALGVAM ERDWVVLLAGINRPIALAQANAVLNRINLLCEIAGTLLFGILLSKYDPVTCLKFAAGL MMGSLPVMISLTWLTNKLSTGVLDRARCSQSCCRTSDEGQLPDADNFVNTGLEAIKLG WREYIQQPVLPASLAYVLLYLNVVLTPGSLMTAFLTQRGIFLSITTYLDAIESYCTRK DNKSKKKKKGKKKGVQRRGAYYYHHLEDMLTVFWSKALHALICLK" mobile_element complement(40011317..40011396) /note="source:scaffold_3_CACTA_0377 2112 2192" /mobile_element_type="transposon:TIR/CACTA" gene complement(40011510..40013728) /locus_tag="TCM_026775" /note="dbxref CacaoGD:Thecc1EG026775" mRNA complement(join(40011510..40012199,40012296..40012546, 40012630..40012863,40013190..40013349,40013455..40013728)) /locus_tag="TCM_026775" /product="Pectinesterase, putative" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s01580.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004838t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s01580.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12171t1" mobile_element complement(40011561..40011590) /note="source:CACAO_on_E212_scaffold_3 27 56" /mobile_element_type="transposon:TIR/hAT" CDS complement(join(40012043..40012199,40012296..40012546, 40012630..40012863,40013190..40013349,40013455..40013678)) /locus_tag="TCM_026775" /note="paralog of Thecc1EG004838t1" /codon_start=1 /product="Pectinesterase, putative" /protein_id="EOY11675.1" /db_xref="Phytozome:POPTR_0005s01580.1" /db_xref="TAIR:AT2G47280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I6Y8" /translation="MQHTAPCMIMLLILSLRTSMADDCSAGNGGSQFASTIVVDKSGK GNFNSIQSAIDSIPSNNAQWIKVRINPGVYTEKVVIPIDKPCIVLEGQDRSVTTITFY AHDRTDRSCTFTSFADNIVAKGITFKNSYNHLLLLERLSSERPIPGVSQAVAARILGD KSAFFQCGFLGLQDTLWDAIGRHYFYQCHIEGAVDFIFGYGQSLYEDCSINVTAGAFS SQIPLGYITAQGRQSSNDPSGFVFKRGEIFGNTQPYLGRAYGPYSRVIFQETTMNAEV VSEGWDAWRYPGKEENFMYAEVNCQGAGSDTSRRVPWEKKLNPSQLNQFSRSSFIDND GWIGRLP" gene complement(40014160..40015923) /locus_tag="TCM_026776" /note="dbxref CacaoGD:Thecc1EG026776" mRNA complement(join(40014160..40014502,40014599..40014846, 40014927..40015130,40015284..40015443,40015532..40015923)) /locus_tag="TCM_026776" /product="Pectinesterase-2, putative" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01000525001.4" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004838t1" /inference="similar to AA sequence:ricco:30128.m008919" /note="quality class is medium, express is none, homology is ortholog medium, intron is none, protein is complete" CDS complement(join(40014322..40014502,40014599..40014846, 40014927..40015130,40015284..40015443,40015532..40015761)) /locus_tag="TCM_026776" /note="dbxref ricco:30128.m008919; paralog of Thecc1EG004838t1" /codon_start=1 /product="Pectinesterase-2, putative" /protein_id="EOY11676.1" /db_xref="TAIR:AT3G24130.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RFK1" /translation="MHHLQFFLHSMLVLFLFMSTRADARKIKYDVQDAIAKTITVDQS GHGDFITIQKAIDSIPSKNSVWIHIHVKAGIYNEKLKIPRDKPRILLGGESRRSTVVQ FGDGGTSIESSTFSLDAEEFLAMDITFKNTHNLQPGNPITWAPAALINADKAAFYRCG FIGVQDTLTDSQGRHYFENCYIEGAMDFIWGNGRSIYQRCILNATASLLGRGGTAYIT AQARDSTTDASGFVFKYCSVFGTGPAYLGRAFRQYARVLFYQTQMANIIVPEGWSAWN NVGKEDSIVYAEVDCEGPGADKSKRVPWEKNLSPQDLSYLINVDSFINEGGWIQRQPT IHPRTC" gene complement(40016406..40017588) /locus_tag="TCM_026777" /note="dbxref CacaoGD:Thecc1EG026777" mRNA complement(join(40016406..40016994,40017074..40017144, 40017526..40017588)) /locus_tag="TCM_026777" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is weak, protein is complete; similar to RNA sequence, EST 0.13 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc6730t1" CDS complement(join(40016658..40016994,40017074..40017144, 40017526..40017558)) /locus_tag="TCM_026777" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11677.1" /translation="MKTTFSIQKHRPIKFYPVKQYLLSSSNKNCRRKIRQDRLIMKRV LLVLFFLGLVLLHCQADARRFLLGVETQKTGNQVVSDDEPGKSGTDEKPATALGPTVG AKSDDGSSNEDESNNSYGTYGNPSGSSTENHHHYTSDHPPVTGN" gene 40017713..40028871 /locus_tag="TCM_026778" /note="dbxref CacaoGD:Thecc1EG026778" mRNA join(40017713..40018337,40018513..40018613, 40018717..40018773,40018856..40018950,40019066..40019165, 40019488..40019546,40019790..40019905,40020248..40020380, 40020757..40020844,40021040..40021118,40021281..40021341, 40021497..40021572,40021825..40021935,40022644..40022739, 40023044..40023166,40023501..40023698,40023911..40024015, 40024129..40024193,40024294..40024387,40024624..40024781, 40025005..40025054,40025164..40025285,40025435..40025542, 40026098..40026190,40026298..40026334,40026667..40026914, 40027028..40027177,40027760..40028871) /locus_tag="TCM_026778" /product="Haloacid dehalogenase-like hydrolase family protein" /inference="alignment:exonerate-protein:2:frave:gene00141" /inference="similar to AA sequence:frave:gene00141" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1782t21" CDS join(40017989..40018337,40018513..40018613, 40018717..40018773,40018856..40018950,40019066..40019165, 40019488..40019546,40019790..40019905,40020248..40020380, 40020757..40020844,40021040..40021118,40021281..40021341, 40021497..40021572,40021825..40021935,40022644..40022739, 40023044..40023166,40023501..40023698,40023911..40024015, 40024129..40024193,40024294..40024387,40024624..40024781, 40025005..40025054,40025164..40025285,40025435..40025542, 40026098..40026190,40026298..40026334,40026667..40026914, 40027028..40027177,40027760..40027921) /locus_tag="TCM_026778" /note="dbxref frave:gene00141" /codon_start=1 /product="Haloacid dehalogenase-like hydrolase family protein" /protein_id="EOY11678.1" /db_xref="TAIR:AT1G56500.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8VZ10" /translation="MAIKLLSTPTSLSHPTKLCFFSSSPKLISRTNFLFQWRSQSRVF TRKMVVKACVKVEEKNVEETGKKEWGKVSAVLFDMDGVLCNSENPSRKAGVDVFAEMG VQVTVEDFVPFTGMGEAYFLGGVASVKGVKEFDPEAAKKRFFEIYLDKYAKPNSGIGF PGALELITQCKNKGLKVAVASSADRVKVDANLAAAGLPLSMFDAIVSADAFENLKPAP DIFLAASKILDVPPDECIVIEDALAGVQAAKAAKMRCIAVTTTLKEDTLKDAGPSFIR NDIGSVSLDDILSGSSDEMVQDSQFLQVSEQNPSTVLNEKTYNGSIPGVDAPSDGVFS LEGLQGSRREILRYGSLGIALSCLYFGITNWKAMQYATPKAIQNLLFGAKSPSFEPNE GESRSARVQQFVNYISDLESRGTAPTVPEFPAKLDWLNTAPLQFGRDLKGKVVLLDFW TYCCINCMHVLPDLDFLEKKYKDKPFTVVGVHSAKFDNEKDLEAIRNAVLRYGITHPV VNDGDMNLWRELGISSWPTFAIVGPNGQLLAQISGEGRRKDLDYLVEAALLFYGKKKL LDNTPIPLKLEKDNDPRLLTSPLKFPGKLAIDVLNNRLFISDSNHNRIVVTNLDGNYI VQIGSTGEDGLHDGSFDDATFNRPQGLAYNAKKNILYVADTENHALREIDFVSETVRT LAGNGTKGSDYTGGGTGTSQLLNSPWDVCFDPVNEKVYIAMAGQHQIWEHNTQDGVTK ALSGNGYERNLNGSSSTSTSFAQPSGISLSPDLMEAYIADSESSSIRGLDLKTGGSRL LAGGDPVFSDNLFRFGDHDGVGSDVLLQHPLGVLCAKDGQIYIADSYNHKIKKLDPAS KRVSTLAGTGKAGFKDGKALAAQLSEPSGIIEAENGRLFIADTNNSVIRYLDLNKADA EILTLELKGVQPPTPKSKSLRRLRRRPSADTQTIVVNGGSSSEGNLYLKVSLPEEYHF SKEAKSKFTVDIEPDIAVSIDPLDGNLSPQGSATLHFRRSISSAFTGRINCKVYYCKE DEVCLYQSLLFEVPFQEEVPESKPAEIKLAYDVKPKASTSSLQLAAR" mobile_element 40028270..40028313 /note="source:CACAO_M_S_E146340_F96_scaffold_12 8552 8594" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 40032835..40033716 /locus_tag="TCM_026779" /note="dbxref CacaoGD:Thecc1EG026779" mRNA 40032835..40033716 /locus_tag="TCM_026779" /product="Basic helix-loop-helix DNA-binding superfamily protein, putative" /inference="alignment:exonerate- protein:2:ricco:30128.m008923" /inference="similar to AA sequence:frave:gene00142" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g07239t00001" CDS 40033009..40033626 /locus_tag="TCM_026779" /note="dbxref frave:gene00142" /codon_start=1 /product="Basic helix-loop-helix DNA-binding superfamily protein, putative" /protein_id="EOY11679.1" /db_xref="TAIR:AT1G09250.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I6Q6" /translation="MASLIPNLEHSPDMSPEFKRKKRRKTDETPGPFDRNQGSQRIKR WRTEREQQIYSSKLIEALRRSRRTSSSTPAKEVRETADRVLAVSAKGTMRWSRAILAS RLGVGAKTMRKHKKAKVTANRSLRKPEIKGEKRKLPAVERKLKVLGRLVPGGRKLSFS NLLEETSDYIAALEMQVRAMTAITELLAGAGTQPPTDRLGSRINS" mobile_element complement(40035819..40036897) /note="source:CACAO_on_E206_scaffold_2 1 1090" /mobile_element_type="transposon:TIR/hAT" gene 40036909..40042561 /locus_tag="TCM_026781" /note="dbxref CacaoGD:Thecc1EG026781" mRNA join(40036909..40037046,40037978..40038408, 40040221..40040954,40041621..40041703,40041814..40042561) /locus_tag="TCM_026781" /product="Uncharacterized protein" /inference="alignment:exonerate-protein:2:frave:gene00149" /inference="similar to AA sequence:Phytozome:GSVIVT01031256001" /note="quality class is medium, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.45 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12196t1" CDS join(40040456..40040954,40041621..40041703, 40041814..40041966) /locus_tag="TCM_026781" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11680.1" /db_xref="Phytozome:GSVIVT01031256001" /translation="MNDSRESDLVVDLENGDNTSSDEDEIKEHALDEEMDRDEVAGQD GSTWRGEGLNIPSKSSFISGGVKVIDQAGRGSKEKKISGEKKQKRGSKKPTKPPRPPG APSLVDEADIKLVREICELSRLRRARYERIKALRKMRADKASLSKSNVFAMIVTILFI CVIVFQGIDFLIFRHLGFSCMMLIGQSSPYCIPKVRANLINVPVIIHFVLTQSKSYRY NLEVRTGAACGITFLVHCHLLQTALI" gene complement(40043005..40045171) /locus_tag="TCM_026782" /note="dbxref CacaoGD:Thecc1EG026782" mRNA complement(join(40043005..40043220,40044223..40044371, 40045055..40045171)) /locus_tag="TCM_026782" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400004949" /inference="similar to AA sequence:ricco:30128.m008925" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g02697t00002_C1" CDS complement(join(40043143..40043220,40044223..40044371, 40045055..40045151)) /locus_tag="TCM_026782" /note="dbxref ricco:30128.m008925" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11681.1" /db_xref="TAIR:AT5G26800.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N481" /translation="MAWVQILRNTREIPVSNPYGFSRFFSRSTPFVVKVGIPEFLNGV GKGVETHVVKLESEIGDFQKLLVTRTLKLKKLGIPCKHRKLILKYAHKYRLGLWRPRA ESLKA" gene complement(40045980..40048368) /locus_tag="TCM_026783" /note="dbxref CacaoGD:Thecc1EG026783" mRNA complement(join(40045980..40047500,40047583..40048368)) /locus_tag="TCM_026783" /product="Glycerol-3-phosphate acyltransferase 2, putative" /inference="alignment:exonerate-protein:2:frave:gene31311" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004855t1" /inference="similar to AA sequence:frave:gene31311" /note="quality class is strong, express is strong, homology is paralog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1804t1" CDS complement(join(40046628..40047500,40047583..40048305)) /locus_tag="TCM_026783" /note="dbxref frave:gene31311; paralog of Thecc1EG004855t1" /codon_start=1 /product="Glycerol-3-phosphate acyltransferase 2, putative" /protein_id="EOY11682.1" /db_xref="TAIR:AT4G01950.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RJD8" /translation="MAGKPQNLNAFLFLQKILLTKTWSKIYLQRKASNSHGFQPQFNK YPFLANGLETHSDKALMFHTEGALLKSSSVFSYFFLVAFEAGGLLRAFILFLLHPIIC LVGKEWGLKIMVFVCFVGLKEESFRIGRTVLPKFFLEDVGNEGFDMVMKCGGKKIGVT DMPRVMVDCFLKDYLRVEAVVGRELKVVCGHFVGLMEEKKPSGTAFLELDELLGKENM DSSVIGISCFDNSLDQQLFSCCEVLYMVSEADKKNWQALPREKYPRPLIFHDGRLAFR PTPLASLRMFMWIPFGIFLLIVRATVGYLIPYKFSTPFLCFTGLTGTLIRPSSFPDRA DDEQKQGGVLYVCNHRTLLDPIYVSIVLDKPFNAVTYSLSRMTELLAPIKTVRLTRNR EEDSKMIGKLLKQGDLVICPEGTTCREPYLLRFSPLFAEITDEIVPVAIDFQVSMFYG TTASGFKFLDPFFLLMNPTSHCSASILEKLPKSLTCQGGGKSKFEVANRVQAIIAKAL NFECTSLTRRDKYMILAGNQGIV" mobile_element 40049801..40050523 /note="source:scaffold_8_CACTA_0855 1771 2539" /mobile_element_type="transposon:TIR/CACTA" gene 40050856..40056920 /locus_tag="TCM_026784" /note="dbxref CacaoGD:Thecc1EG026784" mRNA join(40050856..40050932,40051034..40051273, 40051424..40051570,40051667..40051716,40051813..40051920, 40052048..40052266,40052567..40052731,40053773..40053837, 40054033..40054211,40054649..40054914,40055669..40055873, 40056265..40056920) /locus_tag="TCM_026784" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:29702.m000166.4" /note="quality class is weak, express is none, homology is paralog weak, intron is none, protein is complete" CDS join(40050929..40050932,40051034..40051273, 40051424..40051570,40051667..40051716,40051813..40051920, 40052048..40052266,40052567..40052731,40053773..40053837, 40054033..40054211,40054649..40054914,40055669..40055873, 40056265..40056725) /locus_tag="TCM_026784" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11683.1" /translation="MDSVEGLKDDSDFEMECNIAESNEEDFEYGSIKGFPSITVFDKR QEMLARRWQNSVIMQMLNHTISYWSLCVRVAYLWRPKAMQDLTAEATWVRFPSIPLHM YHKSIPRRITSLIGRLLKIDYNTGAEKKGLPRVCFTCGVFGHTKEMLVSRRKIRGMDK KLASTANQKSQDQWGFEIKIFSATMIIGVANELTSSGATPITSLTDTTSALQAFKEVE LTLKFDSRINDSINADELVEHNDQVTMADEGGGREYNMKKAKAKNNGSQSFPSSLSLL KEKTVQPNINLTEGKASVGHGTIADDECQMSMVNKEEVFWLQKSKANWLTPGDKNTRT DYERLTASICDKEVREALFAMKPMKTLSINGIHALFFQNQWNVVGSSVVKYVQTVLIG ESFSPSRGVRQGDPHSPYLFVLCIERLSHAINIAMEQGLWKPIKLGRHCPPISHFFFV DDLILYAEASVDQMEIINGVLGDFCACLGEKEFLSDNGEWDQEKLSACLPSDLVNKIL MVLPPSLSFKPNTLYLASSASGVFTVASTYELLQNDDPNYIGKLVPMGRKLSMIKGLV AASYHVVTIPCTRSSPNGYKREMLVGWQNPSQGWVAMNSDGALRHSTSLAATSGVLCD YNDFWLGGFAAKLGRCSSYRAELRGVLHSLRIARDKGFRKIWLQVDNKIMVQAITTSV SHPCENSDLLNTIHSLLQLD" mobile_element 40057742..40058756 /note="source:MITE_hAT_10 1 1015" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(40058944..40059535) /note="source:CACAO_on_E241_scaffold_112 439 1104" /mobile_element_type="transposon:TIR/hAT" mobile_element complement(40059811..40059977) /note="source:CACAO_Mariner_E180_scaffold_6 4187 4361" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(40060122..40060167) /note="source:CACAO_M_S_E101721_F266_scaffold_9 1458 1503" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 40060720..40062449 /locus_tag="TCM_026785" /note="dbxref CacaoGD:Thecc1EG026785" mRNA join(40060720..40061369,40062364..40062449) /locus_tag="TCM_026785" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031259001" /note="quality class is strong, express is strong, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaB_g17192t00001" CDS 40060932..40061363 /locus_tag="TCM_026785" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11684.1" /translation="MRRTPSHVLTYLISPPRRIPTTSAGYCRKSCGFLLKFSFQTVQP QKRKKKQSMETKATDSNAVIRPQTTSSTTEKLKLLSSGHPKNHHLGTNIEEETNCGHR RIDDRNDTSSEATRRNADVAHLPAIFISVSVSFFSMYWTEL" gene 40063108..40068093 /locus_tag="TCM_026786" /note="dbxref CacaoGD:Thecc1EG026786" mRNA join(40063108..40063545,40064412..40064508, 40064603..40064694,40064779..40064910,40065187..40065372, 40065509..40065672,40065871..40065949,40066031..40066171, 40066449..40066576,40067152..40068093) /locus_tag="TCM_026786" /product="Importin alpha isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s00880.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026737t3" /inference="similar to AA sequence:Phytozome:POPTR_0013s00880.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b025918t1a2; inference alignment:Newbler:10:TSA:cgbaL_g10402t00001" mRNA join(40063108..40063545,40064412..40064508, 40064603..40064694,40064779..40064910,40065187..40065372, 40065509..40065672,40065871..40065949,40066043..40066171, 40066449..40066576,40067152..40068093) /locus_tag="TCM_026786" /product="Importin alpha isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s00880.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026737t3" /inference="similar to AA sequence:Phytozome:POPTR_0013s00880.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaL_g10402t00001" CDS join(40063324..40063545,40064412..40064508, 40064603..40064694,40064779..40064910,40065187..40065372, 40065509..40065672,40065871..40065949,40066031..40066171, 40066449..40066576,40067152..40067533) /locus_tag="TCM_026786" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG026737t3" /codon_start=1 /product="Importin alpha isoform 2" /protein_id="EOY11686.1" /db_xref="Phytozome:POPTR_0013s00880.1" /db_xref="TAIR:AT1G09270.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q71VM4" /translation="MSLRPSTRTEVRKKGYKTGVDAEEARRRREDNLVEIRKNKREDN LLKKRREGLLLQSQQPLLDAAQNAAAIEKRLESIPLMVQGVWSDDPASQLEATTQFRK LLSIERSPPIDEVIKAGVVPRFVEFLGRQDLPQLQFEAAWALTNVASGTSEHTRVVIE HGAVPMFVQLLSSASDDVREQAVWALGNVAGDSPSCRDLVLGNGALMPLLAQLNERSK LSMLRNATWTLSNFCRGKPPTPFEQVKPALSILRELIHLNDEEVLTDACWALSYLSDG PNDKIQAVIEAGVCSRLVELLGHPSPTVLIPALRTVGNIVTGDDNQTQYIFQFVIENK VLPHLYQLLVQNHKKSIKKEACWTISNITAGNRTQIQAVIEANIILPLVHLLQHAEFD IKKEAAWAISNATSGGAHEQIQFLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKV GEADKEMGMNGGINLYAQMIDECDGLDKIENLQTHDNHEIYEKAVKILERYWAEEEDD EQNLQDGGNENQQGFNFGANQPNVPPGGFKFG" CDS join(40063324..40063545,40064412..40064508, 40064603..40064694,40064779..40064910,40065187..40065372, 40065509..40065672,40065871..40065949,40066043..40066171, 40066449..40066576,40067152..40067533) /locus_tag="TCM_026786" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG026737t3" /codon_start=1 /product="Importin alpha isoform 1" /protein_id="EOY11685.1" /db_xref="Phytozome:POPTR_0013s00880.1" /db_xref="TAIR:AT1G09270.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q71VM4" /translation="MSLRPSTRTEVRKKGYKTGVDAEEARRRREDNLVEIRKNKREDN LLKKRREGLLLQSQQPLLDAAQNAAAIEKRLESIPLMVQGVWSDDPASQLEATTQFRK LLSIERSPPIDEVIKAGVVPRFVEFLGRQDLPQLQFEAAWALTNVASGTSEHTRVVIE HGAVPMFVQLLSSASDDVREQAVWALGNVAGDSPSCRDLVLGNGALMPLLAQLNERSK LSMLRNATWTLSNFCRGKPPTPFEQVKPALSILRELIHLNDEEVLTDACWALSYLSDG PNDKIQAVIEAGVCSRLVELLGHPSPTVLIPALRTVGNIVTGDDNQTQFVIENKVLPH LYQLLVQNHKKSIKKEACWTISNITAGNRTQIQAVIEANIILPLVHLLQHAEFDIKKE AAWAISNATSGGAHEQIQFLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEAD KEMGMNGGINLYAQMIDECDGLDKIENLQTHDNHEIYEKAVKILERYWAEEEDDEQNL QDGGNENQQGFNFGANQPNVPPGGFKFG" gene 40067969..40071948 /locus_tag="TCM_026787" /note="dbxref CacaoGD:Thecc1EG026787" mRNA join(40067969..40068580,40068684..40068845, 40069048..40069153,40069308..40069506,40069748..40069829, 40070002..40070084,40070288..40070420,40070524..40070689, 40070969..40071948) /locus_tag="TCM_026787" /product="Serine hydrolase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s01480.1" /inference="similar to AA sequence:Phytozome:GSVIVT01031261001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g15288t1" mRNA join(40068201..40068580,40068684..40068845, 40069308..40069506,40069748..40069829,40070002..40070084, 40070288..40070420,40070524..40070689,40070969..40071869) /locus_tag="TCM_026787" /product="Serine hydrolase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s01480.1" /inference="similar to AA sequence:Phytozome:POPTR_0005s01480.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc772t9_C1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g15288t1" CDS join(40068431..40068580,40068684..40068845, 40069048..40069153,40069308..40069506,40069748..40069829, 40070002..40070084,40070288..40070420,40070524..40070689, 40070969..40071711) /locus_tag="TCM_026787" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Serine hydrolase isoform 1" /protein_id="EOY11687.1" /db_xref="Phytozome:GSVIVT01031261001" /db_xref="TAIR:AT1G09280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AME5" /translation="MSEDEYGVLLYYKYASITDVDSLLSFYDSNCNSLGLLGRVRLSS NGVNVTVGGLLSALEKHIEAVKSNSLFQGTDFKLASCHHPLNDKVAFECGFTSLSIRV VKELVTFSSHPLFKAPEVSNAGRHLSAAEFHSVLQSAEQLMENGSPSDDKQLVLLDAR NLYETRIGKFHSPSVETLDPGIRQYSDLPAWIDNNSEQLRGKHVLMYCTGGIRCEMAS AYIRSKGPGFENVFQLFGGIQCYLEQFPDGGFFRGKNFVFDHRISVGSSDTNIMGACL ICGSSYDNYSSRCRCMHCRMLVLICDGCQLKSDAYVCELCQKHCKEIGSFPSVEDSEP EALLDQSDLKTVCSDPIISSQLPLRYGNGPPRKLRILCLHGFRQNASSFKGRSASLAK KLKSIAELVFVDAPHELPFIYQSCMEANNSCAPPLGQHAPLPENCKRKCAWLVAPDFS GISEADWKIADLPFDPLQYQGQTDGFDASLGYLRKVFSEQGPFDGILGFSQGAAMAAL VCAQRERIKGDIDFRFVILCSGFALPLPAFKQGSINCPSLHIFGRDPGKDRQITSHTS RYLASLFEDGCSVIIEHEFGHIIPTRPPYIDDIKDFLQRFL" mRNA join(40068816..40068845,40069048..40069153, 40069308..40069506,40069748..40069829,40070002..40070084, 40070296..40070420,40070524..40070689,40070969..40071869) /locus_tag="TCM_026787" /product="Serine hydrolase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s01480.1" /inference="similar to AA sequence:Phytozome:POPTR_0005s01480.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc758t1; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g15288t1" CDS join(40069316..40069506,40069748..40069829, 40070002..40070084,40070288..40070420,40070524..40070689, 40070969..40071711) /locus_tag="TCM_026787" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Serine hydrolase isoform 2" /protein_id="EOY11688.1" /db_xref="Phytozome:POPTR_0005s01480.1" /db_xref="TAIR:AT1G09280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AME5" /translation="MENGSPSDDKQLVLLDARNLYETRIGKFHSPSVETLDPGIRQYS DLPAWIDNNSEQLRGKHVLMYCTGGIRCEMASAYIRSKGPGFENVFQLFGGIQCYLEQ FPDGGFFRGKNFVFDHRISVGSSDTNIMGACLICGSSYDNYSSRCRCMHCRMLVLICD GCQLKSDAYVCELCQKHCKEIGSFPSVEDSEPEALLDQSDLKTVCSDPIISSQLPLRY GNGPPRKLRILCLHGFRQNASSFKGRSASLAKKLKSIAELVFVDAPHELPFIYQSCME ANNSCAPPLGQHAPLPENCKRKCAWLVAPDFSGISEADWKIADLPFDPLQYQGQTDGF DASLGYLRKVFSEQGPFDGILGFSQGAAMAALVCAQRERIKGDIDFRFVILCSGFALP LPAFKQGSINCPSLHIFGRDPGKDRQITSHTSRYLASLFEDGCSVIIEHEFGHIIPTR PPYIDDIKDFLQRFL" CDS join(40069497..40069506,40069748..40069829, 40070002..40070084,40070296..40070420,40070524..40070689, 40070969..40071711) /locus_tag="TCM_026787" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Serine hydrolase isoform 3" /protein_id="EOY11689.1" /db_xref="Phytozome:POPTR_0005s01480.1" /db_xref="TAIR:AT1G09280.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AME5" /translation="MSSCIALEESVVRWHQPILGQKVLALRMSFSYLVEYSAIWNNFL MVVFSEERTLFLITVGSSDTNIMGACLICGSSYDNYSSRCRCMHCRMLVLICDGCQLK SDAYVCELCQKHCKEIGSFPSVEDSEPEALLDQSDLKTVCSDPIISSQLPLRYGNGPP RKLRILCLHGFRQNASSFKGRSASLAKKLKSIAELVFVDAPHELPFIYQSCMEANNSC APPLGQHAPLPENCKRKCAWLVAPDFSGISEADWKIADLPFDPLQYQGQTDGFDASLG YLRKVFSEQGPFDGILGFSQGAAMAALVCAQRERIKGDIDFRFVILCSGFALPLPAFK QGSINCPSLHIFGRDPGKDRQITSHTSRYLASLFEDGCSVIIEHEFGHIIPTRPPYID DIKDFLQRFL" mobile_element 40072218..40072281 /note="source:scaffold_5_CACTA_0617 3220 3277" /mobile_element_type="transposon:TIR/CACTA" gene 40072246..40079056 /locus_tag="TCM_026788" /note="dbxref CacaoGD:Thecc1EG026788" mRNA join(40072246..40072501,40073164..40073238, 40073483..40073746,40073994..40074086,40074209..40074415, 40074684..40074787,40074974..40075040,40075158..40075265, 40075691..40075783,40076413..40076503,40076643..40076713, 40076959..40077014,40077604..40077664,40078008..40079056) /locus_tag="TCM_026788" /product="Metallopeptidase M24 family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s00860.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s00860.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:PASA:2:TSA:puevd3b025920t1a3; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc453t8" mRNA join(40072246..40072501,40073164..40073238, 40073483..40073746,40073994..40074086,40074209..40074415, 40074684..40074787,40074974..40075040,40075158..40075265, 40075691..40075783,40076413..40076503,40076643..40076713, 40076959..40077077,40077604..40077664,40078117..40078568) /locus_tag="TCM_026788" /product="Metallopeptidase M24 family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s00860.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s00860.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc453t7; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc453t8" mRNA join(40072246..40072501,40073164..40073238, 40073483..40073746,40073994..40074086,40074209..40074415, 40074684..40074787,40074974..40075040,40075158..40075265, 40075691..40075783,40076413..40076503,40076643..40076713, 40076959..40077014,40077604..40077664,40078008..40078034, 40078117..40078568) /locus_tag="TCM_026788" /product="Metallopeptidase M24 family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s00860.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s00860.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc453t8; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc453t8" mRNA join(40072246..40072501,40073164..40073238, 40073483..40073746,40073994..40074086,40074209..40074415, 40074684..40074787,40074974..40075040,40075158..40075265, 40075691..40075783,40076413..40076503,40076643..40076713, 40076959..40077014,40077604..40077664,40078117..40078568) /locus_tag="TCM_026788" /product="Metallopeptidase M24 family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s00860.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s00860.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc453t10; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc453t8" mRNA join(40072246..40072501,40073164..40073238, 40073483..40073746,40073994..40074086,40074209..40074415, 40074684..40074787,40074974..40075040,40075158..40075265, 40075691..40075783,40076413..40076503,40076643..40076713, 40076959..40077014,40077588..>40077615) /locus_tag="TCM_026788" /product="Metallopeptidase M24 family protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s00860.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s00860.1" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc453t1; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc453t8" CDS join(40072454..40072501,40073164..40073238, 40073483..40073746,40073994..40074086,40074209..40074415, 40074684..40074787,40074974..40075040,40075158..40075265, 40075691..40075783,40076413..40076503,40076643..40076713, 40076959..40077014,40077604..40077664,40078008..40078034, 40078117..40078230) /locus_tag="TCM_026788" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Metallopeptidase M24 family protein isoform 1" /protein_id="EOY11690.1" /db_xref="Phytozome:POPTR_0013s00860.1" /db_xref="TAIR:AT1G09300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HZG9" /translation="MKTLSTKLLQQLSSKQAIRRHAYSTKAIPDFGQPTPASHPQLMK EGEITPGITSEEYISRRKRLLELLPEKSLAIIAAAPVKMMTDVVPYTFRQDADYLYLT GCQQPGGVAVLSQECGLCMFMPEAKAHDIVWQGQTAGVDAALEMFKAEKAYPMSKLNE ILPDMIKRSCKLFHNTLTATPTYTDMETFQKAAHVGKVSDLSIFTHELRWVKSPAELK LMKESASIACQALLQTMLHSKTYPYEAMLSAKVEYECRLRGAQRMAFNPVVGGGPNGS VIHYSRNDQKIKDGELVLMDVGCELHGYCSDLTRTWPPCGSFSSVQEEVYDLILQTNK ECMRLCKPGASIRQIHNYSVELLFKGLKEIGILKRDQFRSYHQLNPTSIGHYLGMDVH DSSMISYDRPLKPGVVITIEPGIYLPSSLDGPERYQGIGIRIEDEVLITETGCEASWG TFYQTVLTGSMPKEIKHIESLLNNYSHGIEMEGHNNIKAATR" CDS join(40072454..40072501,40073164..40073238, 40073483..40073746,40073994..40074086,40074209..40074415, 40074684..40074787,40074974..40075040,40075158..40075265, 40075691..40075783,40076413..40076503,40076643..40076713, 40076959..40077014,40077604..40077664,40078117..40078230) /locus_tag="TCM_026788" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Metallopeptidase M24 family protein isoform 4" /protein_id="EOY11693.1" /db_xref="Phytozome:POPTR_0013s00860.1" /db_xref="TAIR:AT1G09300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HZG9" /translation="MKTLSTKLLQQLSSKQAIRRHAYSTKAIPDFGQPTPASHPQLMK EGEITPGITSEEYISRRKRLLELLPEKSLAIIAAAPVKMMTDVVPYTFRQDADYLYLT GCQQPGGVAVLSQECGLCMFMPEAKAHDIVWQGQTAGVDAALEMFKAEKAYPMSKLNE ILPDMIKRSCKLFHNTLTATPTYTDMETFQKAAHVGKVSDLSIFTHELRWVKSPAELK LMKESASIACQALLQTMLHSKTYPYEAMLSAKVEYECRLRGAQRMAFNPVVGGGPNGS VIHYSRNDQKIKDGELVLMDVGCELHGYCSDLTRTWPPCGSFSSVQEEVYDLILQTNK ECMRLCKPGASIRQIHNYSVELLFKGLKEIGILKRDQFRSYHQLNPTSIGHYLGMDVH DSSMISYDRPLKPGVVITIEPGIYLPSSLDGPERYQGIGIRIEDEVLITETGCEVLTG SMPKEIKHIESLLNNYSHGIEMEGHNNIKAATR" CDS join(40072454..40072501,40073164..40073238, 40073483..40073746,40073994..40074086,40074209..40074415, 40074684..40074787,40074974..40075040,40075158..40075265, 40075691..40075783,40076413..40076503,40076643..40076713, 40076959..40077014,40077604..40077664,40078008..40078070) /locus_tag="TCM_026788" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Metallopeptidase M24 family protein isoform 2" /protein_id="EOY11691.1" /db_xref="Phytozome:POPTR_0013s00860.1" /db_xref="TAIR:AT1G09300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HZG9" /translation="MKTLSTKLLQQLSSKQAIRRHAYSTKAIPDFGQPTPASHPQLMK EGEITPGITSEEYISRRKRLLELLPEKSLAIIAAAPVKMMTDVVPYTFRQDADYLYLT GCQQPGGVAVLSQECGLCMFMPEAKAHDIVWQGQTAGVDAALEMFKAEKAYPMSKLNE ILPDMIKRSCKLFHNTLTATPTYTDMETFQKAAHVGKVSDLSIFTHELRWVKSPAELK LMKESASIACQALLQTMLHSKTYPYEAMLSAKVEYECRLRGAQRMAFNPVVGGGPNGS VIHYSRNDQKIKDGELVLMDVGCELHGYCSDLTRTWPPCGSFSSVQEEVYDLILQTNK ECMRLCKPGASIRQIHNYSVELLFKGLKEIGILKRDQFRSYHQLNPTSIGHYLGMDVH DSSMISYDRPLKPGVVITIEPGIYLPSSLDGPERYQGIGIRIEDEVLITETGCEASWG TFYQTVIIIKLLVCGR" CDS join(40072454..40072501,40073164..40073238, 40073483..40073746,40073994..40074086,40074209..40074415, 40074684..40074787,40074974..40075040,40075158..40075265, 40075691..40075783,40076413..40076503,40076643..40076713, 40076959..40077014,40077588..>40077615) /locus_tag="TCM_026788" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Metallopeptidase M24 family protein isoform 5" /protein_id="EOY11694.1" /db_xref="Phytozome:POPTR_0013s00860.1" /db_xref="TAIR:AT1G09300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HZG9" /translation="MKTLSTKLLQQLSSKQAIRRHAYSTKAIPDFGQPTPASHPQLMK EGEITPGITSEEYISRRKRLLELLPEKSLAIIAAAPVKMMTDVVPYTFRQDADYLYLT GCQQPGGVAVLSQECGLCMFMPEAKAHDIVWQGQTAGVDAALEMFKAEKAYPMSKLNE ILPDMIKRSCKLFHNTLTATPTYTDMETFQKAAHVGKVSDLSIFTHELRWVKSPAELK LMKESASIACQALLQTMLHSKTYPYEAMLSAKVEYECRLRGAQRMAFNPVVGGGPNGS VIHYSRNDQKIKDGELVLMDVGCELHGYCSDLTRTWPPCGSFSSVQEEVYDLILQTNK ECMRLCKPGASIRQIHNYSVELLFKGLKEIGILKRDQFRSYHQLNPTSIGHYLGMDVH DSSMISYDRPLKPGVVITIEPGIYLPSSLDGPESDDVLQVPRH" CDS join(40072454..40072501,40073164..40073238, 40073483..40073746,40073994..40074086,40074209..40074415, 40074684..40074787,40074974..40075040,40075158..40075265, 40075691..40075783,40076413..40076503,40076643..40076713, 40076959..40077057) /locus_tag="TCM_026788" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Metallopeptidase M24 family protein isoform 3" /protein_id="EOY11692.1" /db_xref="Phytozome:POPTR_0013s00860.1" /db_xref="TAIR:AT1G09300.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4HZG9" /translation="MKTLSTKLLQQLSSKQAIRRHAYSTKAIPDFGQPTPASHPQLMK EGEITPGITSEEYISRRKRLLELLPEKSLAIIAAAPVKMMTDVVPYTFRQDADYLYLT GCQQPGGVAVLSQECGLCMFMPEAKAHDIVWQGQTAGVDAALEMFKAEKAYPMSKLNE ILPDMIKRSCKLFHNTLTATPTYTDMETFQKAAHVGKVSDLSIFTHELRWVKSPAELK LMKESASIACQALLQTMLHSKTYPYEAMLSAKVEYECRLRGAQRMAFNPVVGGGPNGS VIHYSRNDQKIKDGELVLMDVGCELHGYCSDLTRTWPPCGSFSSVQEEVYDLILQTNK ECMRLCKPGASIRQIHNYSVELLFKGLKEIGILKRDQFRSYHQLNPTSIGHYLGMDVH DSSMISYDRPLKPGVVITIEPGIYLPSSLDGPERYLWSPLGEIKVPL" gene 40079526..40080321 /locus_tag="TCM_026789" /note="dbxref CacaoGD:Thecc1EG026789" mRNA 40079526..40080321 /locus_tag="TCM_026789" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30128.m008931" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG029489t1" /inference="similar to AA sequence:ricco:30128.m008931" /note="quality class is strong, express is strong, homology is ortholog strong, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g08370t00001" CDS 40079620..40080120 /locus_tag="TCM_026789" /note="dbxref ricco:30128.m008931; paralog of Thecc1EG029489t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11695.1" /db_xref="TAIR:AT1G56580.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A9PCV4" /translation="MSLVTDEIKASASEIYHGDEICQEKSKFLLEEVGMPRGLLPLRD IEECGYVKDTGFVWLKQKKSITHKFEKIGKLVSYAPEVTAVVEQSKIKKLTGVKTKEL LLWITLSDIYVDDPPTGKITFKTPAGLSRSFPVSAFEIEGEVKDAKEKKKEEKDVNEA LEVKEV" gene complement(40080700..40083914) /locus_tag="TCM_026790" /note="dbxref CacaoGD:Thecc1EG026790" mRNA complement(join(40080700..40081234,40081902..40082546, 40083326..40083914)) /locus_tag="TCM_026790" /product="Agenet domain-containing protein, putative" /inference="alignment:exonerate- protein:2:ricco:30128.m008932" /inference="similar to AA sequence:ricco:30128.m008932" /note="quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12230t1" CDS complement(join(40081226..40081234,40081902..40082546, 40083326..40083817)) /locus_tag="TCM_026790" /note="dbxref ricco:30128.m008932" /codon_start=1 /product="Agenet domain-containing protein, putative" /protein_id="EOY11696.1" /db_xref="TAIR:AT1G09320.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RFL4" /translation="MPPKRKPTTAPATEDPAFPGLEPGSQVEISSNDPGFRGSWYIGT IIKRVSKRNPNKFLVEYTHLFQDEAGTKPLKETINAADLRPLAPRERARKFKFGEEVD AYHHDGWWEGMITKELENGKFHVYFKRSKEQLEFGEDQLRLHREWINGSWKPPLEEDE QVEEKVSEEKEVKPNNGKTEEMISNSTIIENNSDKEVIEGKLESDKAVTQEKLEWDNA ATEEKLESDKAGSGEKLECGEITTEEKFSEGAHVEVTSDEDGFEGAWFAATIVKAMGK DRYLIQYESLRTEDDTDFLKEEFDTLHIRPCPPEIVVADRFKKLDEVDAFYNDGWWVG LVSKVLSDSKYEVFFRTTNEKMKFKHSELRLHQDWIDGKWVAASQAL" gene complement(40084071..40088225) /locus_tag="TCM_026791" /note="dbxref CacaoGD:Thecc1EG026791" mRNA complement(join(40084071..40084600,40084755..40084904, 40084998..40085092,40085258..40085344,40085526..40085732, 40085818..40086147,40086334..40086636,40087003..40087548, 40087640..40087711,40087838..40088044)) /locus_tag="TCM_026791" /product="Peroxidase 31, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400031017" /inference="similar to AA sequence:Phytozome:GSVIVT01037396001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01583t00001" mRNA complement(join(40084157..40084600,40084755..40084921, 40084998..40085092,40085258..40085344,40085526..40085732, 40085818..40086147,40086334..40086636,40087003..40087548, 40087640..40087711,40087838..40088225)) /locus_tag="TCM_026791" /product="Peroxidase 31, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400031017" /inference="similar to AA sequence:Phytozome:GSVIVT01037396001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc935t5; inference alignment:Newbler:10:TSA:cgbaB_g01583t00001" mRNA complement(join(40084227..40084600,40084755..40084904, 40084998..40085092,40085258..40085344,40085526..40085732, 40085818..40086147,40086334..40086636,40087003..40087721)) /locus_tag="TCM_026791" /product="Peroxidase 31, putative isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400031017" /inference="similar to AA sequence:Phytozome:GSVIVT01037396001" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Newbler:10:TSA:cgbaB_g01583t00002; inference alignment:Newbler:10:TSA:cgbaB_g01583t00001" CDS complement(join(40084333..40084600,40084755..40084904, 40084998..40085092,40085258..40085344,40085526..40085732, 40085818..40086147,40086334..40086636,40087003..40087548, 40087640..40087711,40087838..40087930)) /locus_tag="TCM_026791" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Peroxidase 31, putative isoform 1" /protein_id="EOY11697.1" /db_xref="Phytozome:GSVIVT01037396001" /db_xref="TAIR:AT2G18220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RUF4" /translation="MGEKGKKSKTMSISQSAAKEHKEQLERLQKKDPEFYQYLQQHGK DLLTFDDEDVDDDVDVDMEDPETQLGDETHEHGIAEEGEKPSKNVITTAMVDSWCNSI REDGKLSAVRSLMRAFRTACHYGDDTGNDSSAKFSVMSSSVFNKIMLFTLSEMDRVLR KLLKLPASGGKKETINELMNTKQWKSYNHLVKSYLGNALHVLNQMTDTKMISFTLRRL QYSSIFLAAFPSLLRKYIKVALHFWGTGGGALPVVSFLFLRDLCVRLGSDCLDECIRG IYKAYVLNCHFMNAVKLQHIQFLANCVIELIRVDLPTAYQHAFVFIRQLAMLLRDALN MKTKEAFRKVYEWKFMNCLELWTGAICAYSSEADFKPLAYPLTQIISGVARLVPTARY FSLRLRCVRMLNRIAASTGNFIPVSMLLLDMLEMKELNRPPTGGVGKAVDLRTTLKVS KPILKTRAFQEACVISVVEELAEHLAQWSYSVAFFELSFIPAQRLRSFCKSTKVERFR KEMRHLIRQIEANTEFTNKRRASITFLPNDQAATSFLEDEKKVGTSPLSQYVVTLRQR AQQRNDSMMESSVLVGEKSAVFGSKLDRIPASDEEDDIRNKDEDEDGASVFSSSWLPG GDIKAKLPKEEVKKKKKKKRKMEQEVDEDIVEDLVLSSDEDASLSDSPSTEEDGSEEQ PGSRQQSKKQKPKNMSKKNVRSHSNKSKKRRRSG" CDS complement(join(40084333..40084600,40084755..40084904, 40084998..40085092,40085258..40085344,40085526..40085732, 40085818..40086147,40086334..40086636,40087003..40087530)) /locus_tag="TCM_026791" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="Peroxidase 31, putative isoform 5" /protein_id="EOY11701.1" /db_xref="Phytozome:GSVIVT01037396001" /db_xref="TAIR:AT2G18220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RUF4" /translation="MEDPETQLGDETHEHGIAEEGEKPSKNVITTAMVDSWCNSIRED GKLSAVRSLMRAFRTACHYGDDTGNDSSAKFSVMSSSVFNKIMLFTLSEMDRVLRKLL KLPASGGKKETINELMNTKQWKSYNHLVKSYLGNALHVLNQMTDTKMISFTLRRLQYS SIFLAAFPSLLRKYIKVALHFWGTGGGALPVVSFLFLRDLCVRLGSDCLDECIRGIYK AYVLNCHFMNAVKLQHIQFLANCVIELIRVDLPTAYQHAFVFIRQLAMLLRDALNMKT KEAFRKVYEWKFMNCLELWTGAICAYSSEADFKPLAYPLTQIISGVARLVPTARYFSL RLRCVRMLNRIAASTGNFIPVSMLLLDMLEMKELNRPPTGGVGKAVDLRTTLKVSKPI LKTRAFQEACVISVVEELAEHLAQWSYSVAFFELSFIPAQRLRSFCKSTKVERFRKEM RHLIRQIEANTEFTNKRRASITFLPNDQAATSFLEDEKKVGTSPLSQYVVTLRQRAQQ RNDSMMESSVLVGEKSAVFGSKLDRIPASDEEDDIRNKDEDEDGASVFSSSWLPGGDI KAKLPKEEVKKKKKKKRKMEQEVDEDIVEDLVLSSDEDASLSDSPSTEEDGSEEQPGS RQQSKKQKPKNMSKKNVRSHSNKSKKRRRSG" CDS complement(join(40084575..40084600,40084755..40084921, 40084998..40085092,40085258..40085344,40085526..40085732, 40085818..40086147,40086334..40086636,40087003..40087548, 40087640..40087711,40087838..40087930)) /locus_tag="TCM_026791" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Peroxidase 31, putative isoform 2" /protein_id="EOY11698.1" /db_xref="Phytozome:GSVIVT01037396001" /db_xref="TAIR:AT2G18220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RUF4" /translation="MGEKGKKSKTMSISQSAAKEHKEQLERLQKKDPEFYQYLQQHGK DLLTFDDEDVDDDVDVDMEDPETQLGDETHEHGIAEEGEKPSKNVITTAMVDSWCNSI REDGKLSAVRSLMRAFRTACHYGDDTGNDSSAKFSVMSSSVFNKIMLFTLSEMDRVLR KLLKLPASGGKKETINELMNTKQWKSYNHLVKSYLGNALHVLNQMTDTKMISFTLRRL QYSSIFLAAFPSLLRKYIKVALHFWGTGGGALPVVSFLFLRDLCVRLGSDCLDECIRG IYKAYVLNCHFMNAVKLQHIQFLANCVIELIRVDLPTAYQHAFVFIRQLAMLLRDALN MKTKEAFRKVYEWKFMNCLELWTGAICAYSSEADFKPLAYPLTQIISGVARLVPTARY FSLRLRCVRMLNRIAASTGNFIPVSMLLLDMLEMKELNRPPTGGVGKAVDLRTTLKVS KPILKTRAFQEACVISVVEELAEHLAQWSYSVAFFELSFIPAQRLRSFCKSTKVERFR KEMRHLIRQIEANTEFTNKRRASITFLPNDQAATSFLEDEKKVGTSPLSQYVVTLRQR AQQRNDSMMESSMHVFSVFSWVKSLLSLGVSLIGYQLVMKKMISGTRMRMRTVLLFLV PPGYLEVISRPSFLKRR" mRNA complement(join(<40084578..40084616,40084760..40084904, 40084998..40085092,40085258..40085344,40085526..40085732, 40085818..40086147,40086334..40086636,40087003..40087548, 40087640..40087711,40087838..40088225)) /locus_tag="TCM_026791" /product="Peroxidase 31, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400031017" /inference="similar to AA sequence:Phytozome:GSVIVT01037396001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc935t4; inference alignment:Newbler:10:TSA:cgbaB_g01583t00001" mRNA complement(join(40084578..40084904,40084998..40085092, 40085258..40085344,40085526..40085732,40085818..40086147, 40086334..40086636,40087003..40087548,40087640..40087711, 40087838..40088225)) /locus_tag="TCM_026791" /product="Peroxidase 31, putative isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400031017" /inference="similar to AA sequence:Phytozome:GSVIVT01037396001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc935t6; inference alignment:Newbler:10:TSA:cgbaB_g01583t00001" CDS complement(join(<40084578..40084616,40084760..40084904, 40084998..40085092,40085258..40085344,40085526..40085732, 40085818..40086147,40086334..40086636,40087003..40087548, 40087640..40087711,40087838..40087930)) /locus_tag="TCM_026791" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Peroxidase 31, putative isoform 3" /protein_id="EOY11699.1" /db_xref="Phytozome:GSVIVT01037396001" /db_xref="TAIR:AT2G18220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RUF4" /translation="MGEKGKKSKTMSISQSAAKEHKEQLERLQKKDPEFYQYLQQHGK DLLTFDDEDVDDDVDVDMEDPETQLGDETHEHGIAEEGEKPSKNVITTAMVDSWCNSI REDGKLSAVRSLMRAFRTACHYGDDTGNDSSAKFSVMSSSVFNKIMLFTLSEMDRVLR KLLKLPASGGKKETINELMNTKQWKSYNHLVKSYLGNALHVLNQMTDTKMISFTLRRL QYSSIFLAAFPSLLRKYIKVALHFWGTGGGALPVVSFLFLRDLCVRLGSDCLDECIRG IYKAYVLNCHFMNAVKLQHIQFLANCVIELIRVDLPTAYQHAFVFIRQLAMLLRDALN MKTKEAFRKVYEWKFMNCLELWTGAICAYSSEADFKPLAYPLTQIISGVARLVPTARY FSLRLRCVRMLNRIAASTGNFIPVSMLLLDMLEMKELNRPPTGGVGKAVDLRTTLKVS KPILKTRAFQEACVISVVEELAEHLAQWSYSVAFFELSFIPAQRLRSFCKSTKVERFR KEMRHLIRQIEANTEFTNKRRASITFLPNDQAATSFLEDEKKVGTSPLSQYVVTLRQR AQQRNDSMMESSVLVGEKSAVFGSKLDRIPASDEEDDIRNKDEDEDGASVFSSSWLPG GDQCRPTGPSFLKRR" CDS complement(join(40084646..40084904,40084998..40085092, 40085258..40085344,40085526..40085732,40085818..40086147, 40086334..40086636,40087003..40087548,40087640..40087711, 40087838..40087930)) /locus_tag="TCM_026791" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Peroxidase 31, putative isoform 4" /protein_id="EOY11700.1" /db_xref="Phytozome:GSVIVT01037396001" /db_xref="TAIR:AT2G18220.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RUF4" /translation="MGEKGKKSKTMSISQSAAKEHKEQLERLQKKDPEFYQYLQQHGK DLLTFDDEDVDDDVDVDMEDPETQLGDETHEHGIAEEGEKPSKNVITTAMVDSWCNSI REDGKLSAVRSLMRAFRTACHYGDDTGNDSSAKFSVMSSSVFNKIMLFTLSEMDRVLR KLLKLPASGGKKETINELMNTKQWKSYNHLVKSYLGNALHVLNQMTDTKMISFTLRRL QYSSIFLAAFPSLLRKYIKVALHFWGTGGGALPVVSFLFLRDLCVRLGSDCLDECIRG IYKAYVLNCHFMNAVKLQHIQFLANCVIELIRVDLPTAYQHAFVFIRQLAMLLRDALN MKTKEAFRKVYEWKFMNCLELWTGAICAYSSEADFKPLAYPLTQIISGVARLVPTARY FSLRLRCVRMLNRIAASTGNFIPVSMLLLDMLEMKELNRPPTGGVGKAVDLRTTLKVS KPILKTRAFQEACVISVVEELAEHLAQWSYSVAFFELSFIPAQRLRSFCKSTKVERFR KEMRHLIRQIEANTEFTNKRRASITFLPNDQAATSFLEDEKKVGTSPLSQYVVTLRQR AQQRNDSMMESSVLVGEKSAVFGSKLDRIPASDEEDDIRNKDEDEDGASVFSSSWLPG GDIKYGSSYLHLFLPLSLSHAHLCKKIYMHSCTQFLSYP" gene complement(40088070..40090893) /locus_tag="TCM_026792" /note="dbxref CacaoGD:Thecc1EG026792" mRNA complement(join(40088070..40089849,40090086..40090893)) /locus_tag="TCM_026792" /product="Tetratricopeptide repeat (TPR)-like superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s00810.1" /inference="similar to AA sequence:frave:gene00237" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc755t7" CDS complement(join(40088641..40089849,40090086..40090694)) /locus_tag="TCM_026792" /note="dbxref frave:gene00237" /codon_start=1 /product="Tetratricopeptide repeat (TPR)-like superfamily protein" /protein_id="EOY11702.1" /db_xref="TAIR:AT1G56570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FXA9" /translation="MYTARKIAPFTIKHNSLQWVQSHSTWTKIPYTNLSKGAKGPAIL ATNVIKSFFEKGLINDARVLFDEMPDRDVVMWTAMIAGYTSCDHQVHAWTVFCEMVNN GVKPNAFTLSSVLKACKSMQCLACGGLVHGVAVKHGLEGSLYVDNALMDMYATCCVSM EDACSVFRDMKEKNMVTWTTLITGYTHRGDGYGGLQVFREMLLEEAELNPHSFSIAVR ACATIGSHTFGRQIHAAIIKNGLGSNLPVMNSILDMYCRCGFLSEANEYFREMTEKNL ITWNTLIAGYERQDSKESLNVFSQMESEGFSPNSFTFTSITAACANLAVLNCGQQVHG GIVRRGLQGNLVLANALIDMYAKCGSIADSRKIFSEMSERNLVSWTSMMIGYGAHGYG KQAVELFDEMVRSGIRPDRIVFMAVLSACSHVGLVDEGLRCFESMSNYNITPDQEIYG CVVDLLGRAGRVEEAYQLIGSMPFKPDESVWGALLGACKAHKLPNLGKLAALKVLDLR PNKVGAYVMLSNIYAAEGKWGEFARMRKLMRRTGSRKEAGRSWIEVRNQVYSFVVGDK VGSRTEWVYEVLELLIVHMKEAGYMPDLDCLIHDPEDGT" gene complement(40090900..40094911) /locus_tag="TCM_026793" /note="dbxref CacaoGD:Thecc1EG026793" mRNA complement(join(40090900..40091676,40091858..40091906, 40092039..40092532,40092860..40093071,40093271..40093430, 40093902..40094905)) /locus_tag="TCM_026793" /product="Neutral invertase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s00800.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021432t1" /inference="similar to AA sequence:ricco:30128.m008935" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12234t2" mRNA complement(join(40090962..40091679,40091858..40091906, 40092039..40092532,40093902..40094911)) /locus_tag="TCM_026793" /product="Plant neutral invertase family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s00800.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021432t1" /inference="similar to AA sequence:ricco:30128.m008935" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.94 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12234t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12234t2" CDS complement(join(40091350..40091679,40091858..40091906, 40092039..40092532,40093902..40094669)) /locus_tag="TCM_026793" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30128.m008935; paralog of Thecc1EG021432t1" /codon_start=1 /product="Plant neutral invertase family protein isoform 2" /protein_id="EOY11704.1" /db_xref="TAIR:AT1G56560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A7LH71" /translation="MNAINILSKSTMKLPSRVLSLRNASFLGLRYSFNPPCCEEKLTC KSKAILLIFNQNSQFHAYPSRFLGFQRILNNTQRLYCLPSSGFAQPRAVSRPYRVSVE ARVASRVRDLSTSVETRVNDKNFERIFVQDGINVKPLVVERIDKDESIVGGDQVPLTE DENNVNNIRVGLEEGKAGISVEIDIEKEAWNLLRGAVVTYCGTPVGTVAANDPADKLP LNYDQVFIRDFVPSALAFLLKGEGEIVKNFLLHTLQLQALFYAALRCSREMLTVNDGS KNLVRAINNRLSALSFHIREYYWVDMKKINEIYRYKTEEYSLDAINKFNIYPEQIPSW LMDWIPGEGGYLLGNLQPAHMDFRFFTLGNLWSVVSSLGTPKQNEAILNLIEAKWDDI VGQMPLKICYPAVENEEWRIITGCDPKNTPWSYHNGGSWPTLLWQQFTLACIKMGRLE LAQKAVSLAEKRLAIDRWPEYYDTRAGKFIGKQSRLYQTWTIAGFLTSRLMLENPEMA SLLFWEEDYELLEICVCALSKSGRKKCSRGAAKSQILV" CDS complement(join(40091350..40091676,40091858..40091906, 40092039..40092532,40092860..40093071,40093271..40093430, 40093902..40094669)) /locus_tag="TCM_026793" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30128.m008935; paralog of Thecc1EG021432t1" /codon_start=1 /product="Neutral invertase isoform 1" /protein_id="EOY11703.1" /db_xref="TAIR:AT1G56560.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A7LH71" /translation="MNAINILSKSTMKLPSRVLSLRNASFLGLRYSFNPPCCEEKLTC KSKAILLIFNQNSQFHAYPSRFLGFQRILNNTQRLYCLPSSGFAQPRAVSRPYRVSVE ARVASRVRDLSTSVETRVNDKNFERIFVQDGINVKPLVVERIDKDESIVGGDQVPLTE DENNVNNIRVGLEEGKAGISVEIDIEKEAWNLLRGAVVTYCGTPVGTVAANDPADKLP LNYDQVFIRDFVPSALAFLLKGEGEIVKNFLLHTLQLQSWEKTVDCYSPGQGLMPASF KVRTVPLDDNKFEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQERVD VQTGIKLILNLCLADGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQALFYAALRCSRE MLTVNDGSKNLVRAINNRLSALSFHIREYYWVDMKKINEIYRYKTEEYSLDAINKFNI YPEQIPSWLMDWIPGEGGYLLGNLQPAHMDFRFFTLGNLWSVVSSLGTPKQNEAILNL IEAKWDDIVGQMPLKICYPAVENEEWRIITGCDPKNTPWSYHNGGSWPTLLWQFTLAC IKMGRLELAQKAVSLAEKRLAIDRWPEYYDTRAGKFIGKQSRLYQTWTIAGFLTSRLM LENPEMASLLFWEEDYELLEICVCALSKSGRKKCSRGAAKSQILV" mobile_element complement(40091926..40091986) /note="source:CACAO_M_E4063_F12_scaffold_2 6387 6450" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(40091956..40092011) /note="source:CACAO_PIF_E144_scaffold_10 5996 6051" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element complement(40091965..40092022) /note="source:scaffold_8_CACTA_0853 3727 3784" /mobile_element_type="transposon:TIR/CACTA" gene 40096499..40098945 /locus_tag="TCM_026794" /note="dbxref CacaoGD:Thecc1EG026794" mRNA join(40096499..40096847,40097494..40097905, 40098039..40098945) /locus_tag="TCM_026794" /product="Photosystem II reaction center PsbP family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031268001" /inference="similar to AA sequence:ricco:30128.m008936" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.63 coverage; inference alignment:PASA:2:TSA:puevd3b025926t1a2; inference alignment:Newbler:10:TSA:cgbaP2_g11871t00001" mRNA join(40096499..40096847,40097471..40097905, 40098039..40098535) /locus_tag="TCM_026794" /product="Photosystem II reaction center PsbP family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031268001" /inference="similar to AA sequence:ricco:30128.m008936" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.61 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g11871t00001" CDS join(40096647..40096847,40097471..40097905, 40098039..40098260) /locus_tag="TCM_026794" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30128.m008936" /codon_start=1 /product="Photosystem II reaction center PsbP family protein isoform 1" /protein_id="EOY11705.1" /db_xref="TAIR:AT4G15510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7UA58" /translation="MYHNVIDPHLIYAKLYPFVPAASHARYRKMATILDSLLPPSRPT LPTRLSTPFPSSSSCISTRKTQKTKAFALPRRNAMALILSSCIFSEVGLHDFAFAQPS VGLREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPYVLDENLSVEMSSPSSSRYKTV EDLGPPQEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRVADDGKLYYQVEVNIKSY ANTNELAVMPQDRVPRLEWNRRYLSVLGVENNRLYELRLQTPENVFVEEENDLRQVMD SFRVNKVTS" CDS join(40096717..40096847,40097494..40097905, 40098039..40098260) /locus_tag="TCM_026794" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30128.m008936" /codon_start=1 /product="Photosystem II reaction center PsbP family protein isoform 2" /protein_id="EOY11706.1" /db_xref="TAIR:AT4G15510.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7UA58" /translation="MRAIGKWLPYLTRSYPRVDPPFQLAFLRHSLLLLLVSALAKPKR RNAMALILSSCIFSEVGLHDFAFAQPSVGLREYIDTFDGYSFKYPQNWIQVRGAGADI FFRDPYVLDENLSVEMSSPSSSRYKTVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRRE SNILSTSSRVADDGKLYYQVEVNIKSYANTNELAVMPQDRVPRLEWNRRYLSVLGVEN NRLYELRLQTPENVFVEEENDLRQVMDSFRVNKVTS" gene complement(40098397..40101410) /locus_tag="TCM_026795" /note="dbxref CacaoGD:Thecc1EG026795" mRNA complement(join(40098397..40098943,40099082..40099289, 40099758..40100005,40100290..40100379,40100469..40100579, 40100893..40100992,40101142..40101410)) /locus_tag="TCM_026795" /product="Clathrin adaptor complexes medium subunit family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g38950.1" /inference="similar to AA sequence:Phytozome:Glyma03g38950.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1239t3; inference alignment:Newbler:10:TSA:cgbaP2_g06854t00001" mRNA complement(join(40098400..40098943,40099082..40099289, 40099384..40099593,40099758..40100005,40100290..40100379, 40100469..40100579,40100893..40100992,40101142..40101295)) /locus_tag="TCM_026795" /product="Clathrin adaptor complexes medium subunit family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g38950.1" /inference="similar to AA sequence:Phytozome:Glyma03g38950.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g06854t00001" CDS complement(join(40098698..40098943,40099082..40099289, 40099758..40100005,40100290..40100379,40100469..40100579, 40100893..40100992,40101142..40101176)) /locus_tag="TCM_026795" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Clathrin adaptor complexes medium subunit family protein isoform 2" /protein_id="EOY11708.1" /db_xref="Phytozome:Glyma03g38950.1" /db_xref="TAIR:AT1G56590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I562" /translation="MLQCIFLLSDSGEVMLEKQLTGHRVDRSICDWFWDHAISQGDAF KSQPVIASPTHYLFQVVREGITFLACTQVEMPPLMGIEFLCRVADVLSDYLGGLNEDV IKDNFVIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSKVLSVVTGNSSNVSDTLP GATGSCVPWRAADPKYANNEVYVDLVEEMDAVINRVKKLKSTPIYVKPQLTSDAGKCR VNVLVGIRNDPGKTVDSITVQFQLPPCILSADLTSNHGTVNILSNKICSWSINRIPKD KAPSLSGTLVLESELDRLHVFPTFRVGFRIMGVALSGLQIDKLDLRTVPNRLYKGFRA LTRAGEFEVRS" CDS complement(join(40098698..40098943,40099082..40099289, 40099384..40099593,40099758..40100005,40100290..40100379, 40100469..40100579,40100893..40100992,40101142..40101176)) /locus_tag="TCM_026795" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Clathrin adaptor complexes medium subunit family protein isoform 1" /protein_id="EOY11707.1" /db_xref="Phytozome:Glyma03g38950.1" /db_xref="TAIR:AT1G56590.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I562" /translation="MLQCIFLLSDSGEVMLEKQLTGHRVDRSICDWFWDHAISQGDAF KSQPVIASPTHYLFQVVREGITFLACTQVEMPPLMGIEFLCRVADVLSDYLGGLNEDV IKDNFVIVYELLDEMIDNGFPLTTEPNILREMIAPPNIVSKVLSVVTGNSSNVSDTLP GATGSCVPWRAADPKYANNEVYVDLVEEMDAVINRDGVLVKCEIYGEVQVNSHLSGLP DLTLSFANPSILDDVRFHPCVRFRPWESHQILSFVPPDGEFKLMSYRVKKLKSTPIYV KPQLTSDAGKCRVNVLVGIRNDPGKTVDSITVQFQLPPCILSADLTSNHGTVNILSNK ICSWSINRIPKDKAPSLSGTLVLESELDRLHVFPTFRVGFRIMGVALSGLQIDKLDLR TVPNRLYKGFRALTRAGEFEVRS" gene complement(40101864..40104074) /locus_tag="TCM_026796" /note="dbxref CacaoGD:Thecc1EG026796" mRNA complement(join(40101864..40102162,40102763..40102889, 40102974..40103033,40103120..40103323,40103417..40103473, 40103911..40104074)) /locus_tag="TCM_026796" /product="Uncharacterized protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s01380.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004880t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s01380.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc798t1; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc798t1" CDS complement(join(40102074..40102162,40102763..40102889, 40102974..40103033,40103120..40103323,40103417..40103473, 40103911..40103925)) /locus_tag="TCM_026796" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG004880t1" /codon_start=1 /product="Uncharacterized protein isoform 1" /protein_id="EOY11709.1" /db_xref="Phytozome:POPTR_0005s01380.1" /db_xref="TAIR:AT1G09330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LEK2" /translation="MDFSQPPGENYANPKTCFFHVLFKAGALAFYILSALFFDNFVVI FVVTVLLSALDFWVVKNVSGRILVGLRWWNEINDLGESVWRFECLDQESLSRMNKKDS WLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIVGFTKCRKDAKKQI QQFASQTIASRVSSTIQSAFSVV" mRNA complement(join(<40102092..40102162,40102763..40102889, 40102974..40103033,40103270..40103323,40103417..40103473, 40103911..40104074)) /locus_tag="TCM_026796" /product="Uncharacterized protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s01380.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004880t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s01380.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc798t3; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc798t1" CDS complement(join(<40102092..40102162,40102763..40102889, 40102974..40103033,40103270..40103323,40103417..40103473, 40103911..40103925)) /locus_tag="TCM_026796" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG004880t1" /codon_start=1 /product="Uncharacterized protein isoform 2" /protein_id="EOY11710.1" /db_xref="Phytozome:POPTR_0005s01380.1" /db_xref="TAIR:AT1G09330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8LEK2" /translation="MDFSQPPGENYANPKTCFFHVLFKAGALAFYILSALFFDNFVSL SRMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIVGFTKC RKDAKKQIQQFASQTIASRVSSTIQS" gene 40104619..40108413 /locus_tag="TCM_026797" /note="dbxref CacaoGD:Thecc1EG026797" mRNA join(40104619..40105043,40105435..40105569, 40105674..40105760,40105879..40105969,40106084..40106138, 40106439..40106499,40106667..40106888,40107127..40107243, 40107344..40107433,40108032..40108413) /locus_tag="TCM_026797" /product="Chloroplast RNA binding" /inference="alignment:exonerate- protein:2:ricco:30128.m008940" /inference="similar to AA sequence:Phytozome:Glyma03g38930.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.68 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00050t00001" CDS join(40104942..40105043,40105435..40105569, 40105674..40105760,40105879..40105969,40106084..40106138, 40106439..40106499,40106667..40106888,40107127..40107243, 40107344..40107433,40108032..40108211) /locus_tag="TCM_026797" /codon_start=1 /product="Chloroplast RNA binding" /protein_id="EOY11711.1" /db_xref="Phytozome:Glyma03g38930.1" /db_xref="TAIR:AT1G09340.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I6P3" /translation="MSKLVVFQPTKQPSISLLPSSLSDFSGTKLCQFQYKRKVWQPKG ALHVAAASTKKILVMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPITQQLPGEPDSEY SDFKSKILHLKGDRKDFEFVKSSLSAEGFDVVYDINGREADEVEPILDALPNLEQYIY CSSAGVYLKSDLLPHCETDAVDPKSRHKGKLNTENLLASRGVNWTSLRPVYIYGPLNY NPVEEWFFHRLKAGRPIPIPNSGVQITQLGHVKDLAKAFIQVLGNEKASKQVFNISGE KYVTFDGLARACAKAAGFPEPEIVHYNPKEFDFGKKKAFPFRDQHFFASIEKAKHVLG WEPEFDLVEGLADSYNLDFGRGTYRKEADFSTDDMILGKTLVLQS" gene 40110369..40112458 /locus_tag="TCM_026798" /note="dbxref CacaoGD:Thecc1EG026798" mRNA join(40110369..40110993,40111427..40111747, 40111850..40112458) /locus_tag="TCM_026798" /product="Galactinol synthase 2" /inference="alignment:exonerate- protein:2:ricco:30128.m008945" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004881t1" /inference="similar to AA sequence:ricco:30128.m008945" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g03772t00001" CDS join(40110643..40110993,40111427..40111747, 40111850..40112224) /locus_tag="TCM_026798" /note="dbxref ricco:30128.m008945; paralog of Thecc1EG004881t1" /codon_start=1 /product="Galactinol synthase 2" /protein_id="EOY11712.1" /db_xref="TAIR:AT1G56600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O22893" /translation="MAPNITGTKAAAVPAATKATALAKAASLPRRAYVTFLAGNGDYV KGVVGLAKGLRKVKSQYPLLVAILPDVPEDHRKILVDQGCIVKEIEPVYPPENQTQFA MAYYVINYSKLRIWEFVEYCKMIYLDGDIQVFENIDHLFDMEDGSFYAVMDCFCEKTW SHTPQYKIGYCQQCPDKVQWPSQLGPKPPLYFNAGMFVYEPSLRVYDELLRTLKVTPP TPFAEQDYLNMFFRDIYKPIPPVYNLVMAMLWRHPENIELEKVKVAHYCAAGSKPWRF TGKEENMDREDIKMLVSKWWDIYNDESLDYKNFVASGEAEVDRDERTGLQPFLAALSE AGVVDHYINAPSAA" gene 40113590..40114411 /locus_tag="TCM_026799" /note="dbxref CacaoGD:Thecc1EG026799" mRNA 40113590..40114411 /locus_tag="TCM_026799" /product="Uncharacterized protein" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026800t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.88 coverage" CDS 40113611..40114132 /locus_tag="TCM_026799" /note="paralog of Thecc1EG026800t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11713.1" /translation="MGSVGIAVISVALLALNLISCSSGVEQETLMTICFPTENQEFCE NLLMSDPRTSSADLPLLSVISIQLTEKQAKENHLSFMQLHDNATDPSMKDPLNKCVGI YEEMISKVEEAYQLSMAKRYKDISQLAETTKLAYQCENGIPLKNNASMEISETMILTS ETSDYVNIYIARQ" gene 40114953..40115534 /locus_tag="TCM_026800" /note="dbxref CacaoGD:Thecc1EG026800" mRNA 40114953..40115534 /locus_tag="TCM_026800" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400056724" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026799t1" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1960t1" CDS 40114963..40115490 /locus_tag="TCM_026800" /note="paralog of Thecc1EG026799t1" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11714.1" /translation="MASGNHLLSAALLLLVASLFICHSYGVTEDVLATICSDTQNQEI CVEILESDPRTKSADLPLLSAISIELAMKRASKTFDTFSKFRDNSTDPGLKSSYGKCV EIYQDMKDKLEADQELSRKKQFKKITDVGGLTTLAYNCENGLPSDSPTGAITVDMLLT IQTAIYVNQFVSRSA" mobile_element 40115780..40115882 /note="source:scaffold_4_CACTA_0511 5715 5805" /mobile_element_type="transposon:TIR/CACTA" gene 40116291..40117066 /locus_tag="TCM_026801" /note="dbxref CacaoGD:Thecc1EG026801" mRNA 40116291..40117066 /locus_tag="TCM_026801" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400019785" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12244t1" CDS 40116515..40117045 /locus_tag="TCM_026801" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11715.1" /translation="MASYTPRLLALTLLVAFSVIHPSSSVPNETLVAICSKTYNPILC ASILRGDPRTSSADLPELSLVSINLTIEQAANNSQVFVEFHDNTTDPALKKGFNSCVE LYQLMEDNLDKAYHRSEGGDYRNITELVQSSNQAVECASALAINLVTIDALTRAVVSK CETSVSVNQYIARSKA" mobile_element 40117862..40118064 /note="source:CACAO_Mariner_E38_scaffold_2 1260 1471" /mobile_element_type="transposon:TIR/Tc1-Mariner" mobile_element complement(40117914..40118306) /note="source:MITE_PIF_Tourist_6 1 415" /mobile_element_type="transposon:TIR/MITE" mobile_element complement(40118307..40118386) /note="source:CACAO_Again_on_E34_scaffold_1 635 1116" /mobile_element_type="transposon:TIR/hAT" gene complement(40119421..40123038) /locus_tag="TCM_026802" /note="dbxref CacaoGD:Thecc1EG026802" mRNA complement(join(40119421..40119635,40119724..40119805, 40119929..40120047,40120328..40120447,40122049..40122119, 40122223..40122384,40123029..40123038)) /locus_tag="TCM_026802" /product="ADP-ribosylation factor A1F" /inference="alignment:exonerate- protein:2:ricco:30076.m004599.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004887t1" /inference="similar to AA sequence:Phytozome:GSVIVT01031289001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.67 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g15691t1" CDS complement(join(40119630..40119635,40119724..40119805, 40119929..40120047,40120328..40120447,40122049..40122119, 40122223..40122370)) /locus_tag="TCM_026802" /note="paralog of Thecc1EG004887t1" /codon_start=1 /product="ADP-ribosylation factor A1F" /protein_id="EOY11716.1" /db_xref="Phytozome:GSVIVT01031289001" /db_xref="TAIR:AT1G10630.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9PX51" /translation="MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVE ARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA TSGEGLYEGLDWLSNNIANKA" gene complement(40123581..40127761) /locus_tag="TCM_026803" /note="dbxref CacaoGD:Thecc1EG026803" mRNA complement(join(40123581..40124094,40124183..40124334, 40124434..40124592,40124683..40124932,40125012..40125128, 40125323..40125385,40126058..40126453,40127675..40127761)) /locus_tag="TCM_026803" /product="Nodulin MtN21 /EamA-like transporter family protein isoform 1" /inference="alignment:exonerate- protein:2:ricco:30128.m008949" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG006434t2" /inference="similar to AA sequence:ricco:30128.m008949" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaB_g07370t00001" mRNA complement(join(40123651..40124094,40124183..40124334, 40124434..40124592,40124683..40124910,40126057..40126385)) /locus_tag="TCM_026803" /product="Nodulin MtN21 /EamA-like transporter family protein isoform 2" /inference="alignment:exonerate- protein:2:ricco:30128.m008949" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2261t4; inference alignment:Newbler:10:TSA:cgbaB_g07370t00001" CDS complement(join(40123902..40124094,40124183..40124334, 40124434..40124592,40124683..40124932,40125012..40125128, 40125323..40125385,40126058..40126233)) /locus_tag="TCM_026803" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30128.m008949; paralog of Thecc1EG006434t2" /codon_start=1 /product="Nodulin MtN21 /EamA-like transporter family protein isoform 1" /protein_id="EOY11717.1" /db_xref="TAIR:AT1G09380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80521" /translation="MLGDFVPFLANVLVQLGYAGMNITSKLAMESGMKPLILVAYRQI FATLAIAPFAYFLERKTRPKITKHILFQIFLCSLTGATANQVFYFVGLENSSATVACA LNNVLPAATFALAALCRQEAVGIKKASGQAKVLGTLVCVGGAMLLSFYHGHTIGIGDS SIHWAYADKMTSKSSSNGSNFFLGPFLVMASAVAWAVWLIIQGQTSKNFPAPYTCTAL MCFMASIECTIIGIFSDHKISAWSLSSSMRLIAALYAGIVCNAMTFCVLSWSIQKKGP LYVSVFSPLLLVIVAVLSWALLREKLYVGTVVGSVLIVGGLYAVLWGKDREIKQMKSN ELETAEEATKAREKDGKDDLELQLHPQTKGTPQAA" CDS complement(join(40123902..40124094,40124183..40124334, 40124434..40124592,40124683..40124910,40126057..40126233)) /locus_tag="TCM_026803" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Nodulin MtN21 /EamA-like transporter family protein isoform 2" /protein_id="EOY11718.1" /db_xref="TAIR:AT1G09380.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80521" /translation="MLGDFVPFLANVLVQLGYAGMNITSKLAMESGMKPLILVAYRQI FATLAIAPFAYFLERKASGQAKVLGTLVCVGGAMLLSFYHGHTIGIGDSSIHWAYADK MTSKSSSNGSNFFLGPFLVMASAVAWAVWLIIQGQTSKNFPAPYTCTALMCFMASIEC TIIGIFSDHKISAWSLSSSMRLIAALYAGIVCNAMTFCVLSWSIQKKGPLYVSVFSPL LLVIVAVLSWALLREKLYVGTVVGSVLIVGGLYAVLWGKDREIKQMKSNELETAEEAT KAREKDGKDDLELQLHPQTKGTPQAA" gene 40128819..40136353 /locus_tag="TCM_026805" /note="dbxref CacaoGD:Thecc1EG026805" mRNA join(40128819..40129388,40129850..40130038, 40130431..40130591,40131023..40131287,40131394..40131677, 40135267..40135501,40135589..40135689,40135821..40136180, 40136310..40136353) /locus_tag="TCM_026805" /product="GDSL-like Lipase/Acylhydrolase superfamily protein" /inference="alignment:exonerate- protein:2:ricco:30128.m008951" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004890t1" /inference="similar to AA sequence:ricco:30128.m008951" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12291t1" CDS join(40129109..40129388,40129850..40130038, 40130431..40130591,40131023..40131287,40131394..40131626) /locus_tag="TCM_026805" /note="dbxref ricco:30128.m008951; paralog of Thecc1EG004890t1" /codon_start=1 /product="GDSL-like Lipase/Acylhydrolase superfamily protein" /protein_id="EOY11719.1" /db_xref="TAIR:AT1G09390.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80522" /translation="MASPLSLSLLCHHPIFFFCFSLLFSTLLLPSFPHAVASQCKNRP IIFNFGDSNSDTGGLASGLGFPINLPNGRSFFRRPTGRLSDGRLLIDFLCQSLNASYL SPYLDSLGGSKFTNGANFAVVGSSTLPKYVPFSLNIQVMQFLHFKARSLELVNAGSRN LINEEGFRNALYIIDIGQNDIADSFDKNLSYVQVTKRIPSIITEIKNAVKTLYNQGGR KFWIHNTGPLGCLPQKLWLVQKKDLDPHGCLSSYNSAALLFNEVLRRLCQELRSELAD STIVYVDIYAIKYDLIANSSKYGFSSPLMACCGSGGPPYNYNIRVTCGQPGYQVCNEG SRFLNWDGIHYTEAANSIIASRVLSTAYSSPRTTFDFFCRS" gene 40132209..40136644 /locus_tag="TCM_026806" /note="dbxref CacaoGD:Thecc1EG026806" mRNA join(40132209..40134898,40135267..40135689, 40135821..40136180,40136310..40136353) /locus_tag="TCM_026806" /product="Pentatricopeptide repeat (PPR) superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s00680.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012708t3" /inference="similar to AA sequence:Phytozome:POPTR_0013s00680.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.99 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc33t23" mRNA join(40132269..40135689,40135821..40136180, 40136310..40136644) /locus_tag="TCM_026806" /product="Pentatricopeptide repeat (PPR) superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s00680.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG012708t3" /inference="similar to AA sequence:Phytozome:POPTR_0013s00680.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc53t12; alternateUTRof:Thecc1EG026806t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc33t23" CDS 40132312..40134507 /locus_tag="TCM_026806" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG012708t3" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein isoform 1" /protein_id="EOY11720.1" /db_xref="Phytozome:POPTR_0013s00680.1" /db_xref="TAIR:AT1G56690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FXB9" /translation="MITGTGSLPTSLNFISAFEKRSNLSYSSMRFLLNTCRAYSTSCT VVPRSRIAQFARVGQIQIARKVFDELPNKTIDTWNSIIAGYFQNNQPNEAQLLFNKMP EKNTVSWNNLIAGYVKNGMVSEARKVFDKMPERNVVSWTAMVRGYVQEGMMCEAESLF WLMPEKNVVSWTVMLGGLIQEGRIDEARRLYDMIPEKDVVARTNMIAGYCKDGHLSEA REIFDEMPRRNVISWTIMITGYAQNNRVDIARKLFEVMPEKNEVSWTAMLMGYTQCGR LEAAWELFKAMPVKSVVACNALILGFGHNGEVTKARRVFDEMKVKDDGTWSAMIKVYE RKGFELKALDLFILMQTEGIRPNFPSLISILSVCASFASLNHGRQVHAQLVRSQFDVD VYVASVLITMYIKCGDLVKAKLVFDRFSSKDIVMWNSMISGNAQHGLGEEALWIFQSM FSAGMMPDDITFVGVLTACSYTGKVKEGLEIFELMKSKYLVEPKTEHYACMVDLLGRA GKVNEAMNLIEKMPVEADAIVWGSLLGACRNHGKLDLAEVAARKLLQLEPENAGPYIL LSNIYASQGKWSDVSELRKNIRARCVKKSPGSSWIEVEKRVHMFTTGDSRSHPEHAMI MRMLEKLGVLLREAGYCPDGSFVLHDVDEEEKLYSLRYHSEKLAVAYGLLKLPKEMPI RVMKNLRVCGDCHTAIKLIAKVTKREIILRDANRFHHFKDGFCSCRDYW" CDS 40132312..40134507 /locus_tag="TCM_026806" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG012708t3" /codon_start=1 /product="Pentatricopeptide repeat (PPR) superfamily protein isoform 1" /protein_id="EOY11721.1" /db_xref="Phytozome:POPTR_0013s00680.1" /db_xref="TAIR:AT1G56690.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FXB9" /translation="MITGTGSLPTSLNFISAFEKRSNLSYSSMRFLLNTCRAYSTSCT VVPRSRIAQFARVGQIQIARKVFDELPNKTIDTWNSIIAGYFQNNQPNEAQLLFNKMP EKNTVSWNNLIAGYVKNGMVSEARKVFDKMPERNVVSWTAMVRGYVQEGMMCEAESLF WLMPEKNVVSWTVMLGGLIQEGRIDEARRLYDMIPEKDVVARTNMIAGYCKDGHLSEA REIFDEMPRRNVISWTIMITGYAQNNRVDIARKLFEVMPEKNEVSWTAMLMGYTQCGR LEAAWELFKAMPVKSVVACNALILGFGHNGEVTKARRVFDEMKVKDDGTWSAMIKVYE RKGFELKALDLFILMQTEGIRPNFPSLISILSVCASFASLNHGRQVHAQLVRSQFDVD VYVASVLITMYIKCGDLVKAKLVFDRFSSKDIVMWNSMISGNAQHGLGEEALWIFQSM FSAGMMPDDITFVGVLTACSYTGKVKEGLEIFELMKSKYLVEPKTEHYACMVDLLGRA GKVNEAMNLIEKMPVEADAIVWGSLLGACRNHGKLDLAEVAARKLLQLEPENAGPYIL LSNIYASQGKWSDVSELRKNIRARCVKKSPGSSWIEVEKRVHMFTTGDSRSHPEHAMI MRMLEKLGVLLREAGYCPDGSFVLHDVDEEEKLYSLRYHSEKLAVAYGLLKLPKEMPI RVMKNLRVCGDCHTAIKLIAKVTKREIILRDANRFHHFKDGFCSCRDYW" gene complement(40136389..40137114) /locus_tag="TCM_026807" /note="dbxref CacaoGD:Thecc1EG026807" mRNA complement(join(40136389..40137009,40137101..40137114)) /locus_tag="TCM_026807" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s00760.1" /note="quality class is strong, express is strong, homology is ortholog weak, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g15696t1" CDS complement(40136549..40136941) /locus_tag="TCM_026807" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11722.1" /translation="MESGRKKRKMGNQEEEEDDEEEEEEDDEEEEEEKVEKFFALIRS TREMRDRLRNVPNGSKEEEERKKQEEKQVAAVWNPKFQPEDFMEDSKPKNLLAVNEAG PSSNREQEQGQDTKEGGEDGGLDLKLSL" gene complement(40137180..40144114) /locus_tag="TCM_026808" /note="dbxref CacaoGD:Thecc1EG026808" mRNA complement(join(40137180..40137207,40138123..40138362, 40138664..40138906,40138999..40139199,40139562..40139764, 40139839..40139959,40140041..40140078,40140169..40140277, 40140389..40140594,40140715..40140829,40141492..40141586, 40141849..40142114,40142235..40142499,40143134..40143724, 40143924..40144114)) /locus_tag="TCM_026808" /product="Glucose-6-phosphate 1-dehydrogenase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s00660.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002394t1" /inference="similar to AA sequence:Phytozome:GSVIVT01031295001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc33t21" mRNA complement(join(40137875..40138906,40138999..40139199, 40139562..40139764,40139839..40139959,40140041..40140078, 40140169..40140277,40140389..40140594,40140715..40140829, 40141492..40141586,40141849..40142114,40142235..40142499, 40143134..40143407)) /locus_tag="TCM_026808" /product="Glucose-6-phosphate 1-dehydrogenase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s00660.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002394t1" /inference="similar to AA sequence:Phytozome:GSVIVT01031295001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12277t4; alternateUTRof:Thecc1EG026808t1; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc33t21; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc33t20_C2" CDS complement(join(40138669..40138906,40138999..40139199, 40139562..40139764,40139839..40139959,40140041..40140078, 40140169..40140277,40140389..40140594,40140715..40140829, 40141492..40141586,40141849..40142114,40142235..40142499, 40143134..40143208)) /locus_tag="TCM_026808" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG002394t1" /codon_start=1 /product="Glucose-6-phosphate 1-dehydrogenase isoform 1" /protein_id="EOY11723.1" /db_xref="Phytozome:GSVIVT01031295001" /db_xref="TAIR:AT1G09420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7UA79" /translation="MSVSFSHFLIPFSESAIARSISLFPDAANNFQSLRGSRLALYVG ADNFCRRYCGLKLQVLKRLNIQQRNRKHGPANEFKSIRNQDKDQSENPSRNLANDELF SEAASSISSPNDSAEEHTRSTSQPKESSLPSSQNVILKKPDASLELPSSFVQKHSLNL NVDDHHRGSSLCIAVIGATGELARNKIFPALFALYYSGFLPENVGIFGYSRKNLTDED LRSLIASTLTCRIDHQQNCEDKMDVFLSRTYYLNGGYDNKEGMSKLNARMEQIEGGYR ANRIFYLSVPQEALLDVASSLANNAQTKKGWNRIIIEKPFGFDALSSQWFTKSLLSNF EEKQIYRIDHLLGRNLIENLTVLRFSNLVFEPLWSRTYIHNVQVLLSEDLGMQTGRYF DGYGVIRDIVHSHMLQTIALLAMEPPVSLDGEDIRNEKVKVLRSIRKLEPSDVILGQY KATSGDKVDVSLSSLTPTFFAAALYIDNGRWDGVPFLIKAGVGLIKHRVEIRIQFNHV PGNLYRERFGHNTDLATNELILRDAPDEAILVKINNKIPGLGLQLDASELNLLYKDKY NVEVPDSYEHLLLDVIDGDSHLFLRSDELAAAWSILTPVLQEIDRNNIAPELYELGGR GPVGAYYLWAKHGVRWADD" CDS complement(join(40138669..40138906,40138999..40139199, 40139562..40139764,40139839..40139959,40140041..40140078, 40140169..40140277,40140389..40140594,40140715..40140829, 40141492..40141586,40141849..40142114,40142235..40142499, 40143134..40143208)) /locus_tag="TCM_026808" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG002394t1" /codon_start=1 /product="Glucose-6-phosphate 1-dehydrogenase isoform 1" /protein_id="EOY11724.1" /db_xref="Phytozome:GSVIVT01031295001" /db_xref="TAIR:AT1G09420.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7UA79" /translation="MSVSFSHFLIPFSESAIARSISLFPDAANNFQSLRGSRLALYVG ADNFCRRYCGLKLQVLKRLNIQQRNRKHGPANEFKSIRNQDKDQSENPSRNLANDELF SEAASSISSPNDSAEEHTRSTSQPKESSLPSSQNVILKKPDASLELPSSFVQKHSLNL NVDDHHRGSSLCIAVIGATGELARNKIFPALFALYYSGFLPENVGIFGYSRKNLTDED LRSLIASTLTCRIDHQQNCEDKMDVFLSRTYYLNGGYDNKEGMSKLNARMEQIEGGYR ANRIFYLSVPQEALLDVASSLANNAQTKKGWNRIIIEKPFGFDALSSQWFTKSLLSNF EEKQIYRIDHLLGRNLIENLTVLRFSNLVFEPLWSRTYIHNVQVLLSEDLGMQTGRYF DGYGVIRDIVHSHMLQTIALLAMEPPVSLDGEDIRNEKVKVLRSIRKLEPSDVILGQY KATSGDKVDVSLSSLTPTFFAAALYIDNGRWDGVPFLIKAGVGLIKHRVEIRIQFNHV PGNLYRERFGHNTDLATNELILRDAPDEAILVKINNKIPGLGLQLDASELNLLYKDKY NVEVPDSYEHLLLDVIDGDSHLFLRSDELAAAWSILTPVLQEIDRNNIAPELYELGGR GPVGAYYLWAKHGVRWADD" gene 40144838..40147606 /locus_tag="TCM_026811" /note="dbxref CacaoGD:Thecc1EG026811" mRNA join(40144838..40144923,40145668..40146001, 40146607..40146711,40146812..40146862,40146985..40147606) /locus_tag="TCM_026811" /product="Pyrrolidone-carboxylate peptidase isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s00650.1" /inference="similar to AA sequence:ricco:30128.m008959" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.84 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12320t1; inference alignment:Newbler:10:TSA:cgbaP2_g10970t00001" mRNA join(40144842..40144999,40145668..40146001, 40146607..40146711,40146815..40146862,40146985..40147538) /locus_tag="TCM_026811" /product="Peptidase C15, pyroglutamyl peptidase I-like isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s00650.1" /inference="similar to AA sequence:ricco:30128.m008959" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Newbler:10:TSA:cgbaB_g02410t00001; alternateUTRof:Thecc1EG026811t1; inference alignment:Newbler:10:TSA:cgbaP2_g10970t00001" mRNA join(40144872..40144923,40145668..40146001, 40146607..40146711,40146815..40146862,40146985..40147483) /locus_tag="TCM_026811" /product="Peptidase C15, pyroglutamyl peptidase I-like isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s00650.1" /inference="similar to AA sequence:ricco:30128.m008959" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g10970t00001; inference alignment:Newbler:10:TSA:cgbaP2_g10970t00001" mRNA join(40145078..40145478,40145668..40146001, 40146607..40146711,40146815..40146862,40146985..40147606) /locus_tag="TCM_026811" /product="Peptidase C15, pyroglutamyl peptidase I-like isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s00650.1" /inference="similar to AA sequence:ricco:30128.m008959" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:PASA:2:TSA:puevd3b025942t1a2; alternateUTRof:Thecc1EG026811t1; inference alignment:Newbler:10:TSA:cgbaP2_g10970t00001" CDS join(40145735..40146001,40146607..40146711, 40146812..40146862,40146985..40147227) /locus_tag="TCM_026811" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30128.m008959" /codon_start=1 /product="Pyrrolidone-carboxylate peptidase isoform 3" /protein_id="EOY11727.1" /db_xref="TAIR:AT1G56700.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GVF6" /translation="MGSEGPAAVTIHVTGFKKFHGVSENPTETIVSNLKEYTKKNGLP KGLILGSCSVLETAGQGALTPLYQTLQSALNGKDSESSSSGRIIWLHFGVNSGASRFA IEHQAVNEATFRCPDEMGWKPQQKEPIIRADGGISRVRQTSLPVEEITKALAKKGYEV MTSDDAGRFVCNYVYYHSLCFAEQNGTKSLFVHVPLFLTIDEETQMKFAASLLEVLTS LCQ" CDS join(40145735..40146001,40146607..40146711, 40146815..40146862,40146985..40147227) /locus_tag="TCM_026811" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30128.m008959" /codon_start=1 /product="Peptidase C15, pyroglutamyl peptidase I-like isoform 1" /protein_id="EOY11725.1" /db_xref="TAIR:AT1G56700.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GVF6" /translation="MGSEGPAAVTIHVTGFKKFHGVSENPTETIVSNLKEYTKKNGLP KGLILGSCSVLETAGQGALTPLYQTLQSALNGKDSESSSSGRIIWLHFGVNSGASRFA IEHQAVNEATFRCPDEMGWKPQKEPIIRADGGISRVRQTSLPVEEITKALAKKGYEVM TSDDAGRFVCNYVYYHSLCFAEQNGTKSLFVHVPLFLTIDEETQMKFAASLLEVLTSL CQ" CDS join(40145735..40146001,40146607..40146711, 40146815..40146862,40146985..40147227) /locus_tag="TCM_026811" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30128.m008959" /codon_start=1 /product="Peptidase C15, pyroglutamyl peptidase I-like isoform 1" /protein_id="EOY11726.1" /db_xref="TAIR:AT1G56700.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GVF6" /translation="MGSEGPAAVTIHVTGFKKFHGVSENPTETIVSNLKEYTKKNGLP KGLILGSCSVLETAGQGALTPLYQTLQSALNGKDSESSSSGRIIWLHFGVNSGASRFA IEHQAVNEATFRCPDEMGWKPQKEPIIRADGGISRVRQTSLPVEEITKALAKKGYEVM TSDDAGRFVCNYVYYHSLCFAEQNGTKSLFVHVPLFLTIDEETQMKFAASLLEVLTSL CQ" CDS join(40145735..40146001,40146607..40146711, 40146815..40146862,40146985..40147227) /locus_tag="TCM_026811" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30128.m008959" /codon_start=1 /product="Peptidase C15, pyroglutamyl peptidase I-like isoform 1" /protein_id="EOY11728.1" /db_xref="TAIR:AT1G56700.2" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8GVF6" /translation="MGSEGPAAVTIHVTGFKKFHGVSENPTETIVSNLKEYTKKNGLP KGLILGSCSVLETAGQGALTPLYQTLQSALNGKDSESSSSGRIIWLHFGVNSGASRFA IEHQAVNEATFRCPDEMGWKPQKEPIIRADGGISRVRQTSLPVEEITKALAKKGYEVM TSDDAGRFVCNYVYYHSLCFAEQNGTKSLFVHVPLFLTIDEETQMKFAASLLEVLTSL CQ" gene complement(40148246..40149190) /locus_tag="TCM_026813" /note="dbxref CacaoGD:Thecc1EG026813" mRNA complement(join(40148246..40148484,40148619..40149190)) /locus_tag="TCM_026813" /product="Pectin lyase-like superfamily protein, putative" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004895t1" /inference="similar to AA sequence:Phytozome:GSVIVT01031298001" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage" CDS complement(join(40148386..40148484,40148619..40149011)) /locus_tag="TCM_026813" /note="paralog of Thecc1EG004895t1" /codon_start=1 /product="Pectin lyase-like superfamily protein, putative" /protein_id="EOY11729.1" /db_xref="Phytozome:GSVIVT01031298001" /db_xref="TAIR:AT1G02460.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9FWX5" /translation="MPGHQVFLLLFSISSSFLLISIQSRYHRHTDKKQFRIVSHISIP PLPAPEAAAASPGYNAKSPNNPSSVFNVLDFGAVGDGITDDTQAFKLAWDMACQAESA VLLVPDGHSFMLQSTIFTGPCKTDDFVFQIDGTRMPPDGPDSWPRNISKPQLLAHNYV DRC" mobile_element complement(40149659..40150452) /note="source:CACAO_Again_on_S_E199_scaffold_6 1 830" /mobile_element_type="transposon:TIR/hAT" gene complement(40151824..40152838) /locus_tag="TCM_026814" /note="dbxref CacaoGD:Thecc1EG026814" mRNA complement(join(40151824..40152080,40152338..40152431, 40152516..40152577,40152678..40152838)) /locus_tag="TCM_026814" /product="C2H2 and C2HC zinc fingers superfamily protein, putative" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400004922" /inference="similar to AA sequence:Phytozome:GSVIVT01031300001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12509t2" CDS complement(join(40151971..40152080,40152338..40152431, 40152516..40152577,40152678..40152813)) /locus_tag="TCM_026814" /codon_start=1 /product="C2H2 and C2HC zinc fingers superfamily protein, putative" /protein_id="EOY11730.1" /db_xref="Phytozome:GSVIVT01031300001" /db_xref="TAIR:AT5G26749.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7UA82" /translation="MPLGKYNCDYCEKQFQDTPSARKRHLQGLQHLRAKAQWYHSQNA NDPNHSLTEPFAKGICNRFVKTGFCQFGDNCKYFHPKNDSRGANPQAAAAPAPGSVEG AGIGMSWGNLPPSLKPPPEGGYPPLPFVDWG" gene complement(40153274..40158046) /locus_tag="TCM_026815" /note="dbxref CacaoGD:Thecc1EG026815" mRNA complement(join(40153274..40153795,40153895..40153997, 40154408..40154491,40154573..40154668,40155049..40155099, 40155192..40155332,40155432..40155488,40155674..40155748, 40155832..40156104,40156194..40156253,40156393..40156485, 40156620..40156788,40157748..40157999)) /locus_tag="TCM_026815" /product="Shaggy-related kinase 11, 11 isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400004921.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004896t2" /inference="similar to AA sequence:Phytozome:Glyma10g28530.3" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01387t00001" mRNA complement(join(40153287..40153795,40153895..40153997, 40154408..40154491,40154573..40154668,40155049..40155102, 40155192..40155332,40155432..40155488,40155674..40155748, 40155832..40156104,40156194..40156256,40156393..40156485, 40156620..40156788,40157748..40158046)) /locus_tag="TCM_026815" /product="Shaggy-related kinase 11, 11 isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400004921.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004896t2" /inference="similar to AA sequence:Phytozome:Glyma10g28530.3" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.86 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12517t1; inference alignment:Newbler:10:TSA:cgbaP2_g01387t00001" CDS complement(join(40153713..40153795,40153895..40153997, 40154408..40154491,40154573..40154668,40155049..40155099, 40155192..40155332,40155432..40155488,40155674..40155748, 40155832..40156104,40156194..40156253,40156393..40156485, 40156620..40156727)) /locus_tag="TCM_026815" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG004896t2" /codon_start=1 /product="Shaggy-related kinase 11, 11 isoform 1" /protein_id="EOY11731.1" /db_xref="Phytozome:Glyma10g28530.3" /db_xref="TAIR:AT5G26751.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q96287" /translation="MASVGMAPTSVLRESNAAGVDKLPEEMNDMKIRDDKEMEATVVD GNGTETGHIIVTTIGGRNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKV LQDKRYKNRELQTMRLLDHPNVVALKHCFFSTTEKDELYLNLVLEYVPETVHRVIKHY NKLNQRMPLIYVKLYTYQIFRALSYIHRCIGVCHRDIKPQNLLVNPHTHQVKLCDFGS AKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLAELLLGQPLFPGES GVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHRRMPPEAVDLVSR LLQYSPNLRCTALDALIHPFFDELRDPNARLPNGRFLPPLFNFKSHELNGVPVEILAK LIPEHARKQCPFLGL" CDS complement(join(40153713..40153795,40153895..40153997, 40154408..40154491,40154573..40154668,40155049..40155102, 40155192..40155332,40155432..40155488,40155674..40155748, 40155832..40156104,40156194..40156256,40156393..40156485, 40156620..40156727)) /locus_tag="TCM_026815" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG004896t2" /codon_start=1 /product="Shaggy-related kinase 11, 11 isoform 2" /protein_id="EOY11732.1" /db_xref="Phytozome:Glyma10g28530.3" /db_xref="TAIR:AT5G26751.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q96287" /translation="MASVGMAPTSVLRESNAAGVDKLPEEMNDMKIRDDKEMEATVVD GNGTETGHIIVTTIGGRNGQPKQQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKK VLQDKRYKNRELQTMRLLDHPNVVALKHCFFSTTEKDELYLNLVLEYVPETVHRVIKH YNKLNQRMPLIYVKLYTYQIFRALSYIHRCIGVCHRDIKPQNLLVNPHTHQVKLCDFG SAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLAELLLGQQPLFPG ESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHRRMPPEAVDLV SRLLQYSPNLRCTALDALIHPFFDELRDPNARLPNGRFLPPLFNFKSHELNGVPVEIL AKLIPEHARKQCPFLGL" gene 40158889..40164018 /locus_tag="TCM_026816" /note="dbxref CacaoGD:Thecc1EG026816" mRNA join(40158889..40159357,40159509..40159572, 40159677..40159733,40159990..40164018) /locus_tag="TCM_026816" /product="Global transcription factor C isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s00600.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026818t2" /inference="similar to AA sequence:ricco:30128.m008965" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc174t3" mRNA join(40159328..40159357,40159450..40159572, 40159677..40159733,40159990..>40163126) /locus_tag="TCM_026816" /product="Global transcription factor C isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s00600.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026818t2" /inference="similar to AA sequence:Phytozome:POPTR_0013s00600.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc174t2; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc174t3" CDS 40160060..40163275 /locus_tag="TCM_026816" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30128.m008965; paralog of Thecc1EG026818t2" /codon_start=1 /product="Global transcription factor C isoform 1" /protein_id="EOY11733.1" /db_xref="TAIR:AT4G10710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AQP4" /translation="MAESRNRNVKPANGKPPPAANTYAINLDNFSKRLKILYSHWNKH NADLWGASSALVIATPPVSEDLRYLKSSALNIWLVGYEFPETIMVFLKKQIHFLCSQK KASLLDVVKKSAREAVGVEVVIHVKAKGDDGTGLMDSIFRAIYSQTNSSDHAVPVVGH ISRETPEGKFLETWDEKLKNAKFELSDVTNGFSDLFAVKDETELTNVKKAAFLTSSVM RQFVVPKLEKVIDEERKVSHSALMDDTEKTILEPARIKVKLKAENIDICYPPIFQSGG EFDLKPSASSNDENLYYDSTSVIICALGSRYNSYCSNIARTFLIDANSLQSKAYEVLL KAQEAAIDALKSGNKVSSVYQAAVSVVEKDAPELAANLTKTAGTGIGLEFRESGLSLN AKNDRILKPGMVFNVSLGFQNLQTETKNPKTQKYSVLLADTVIVGEKVPDILTSKSSK AVKDVAYSFNEDDEEEEKLKVKAEDNGNDTLFSKTTLRSDNHEMSKEELRRQHQAELA RQKNEETARRLAGGGAVAADNRGAVKTVGDLIAYKNVNDLPPPRDLMIQVDQKNEAIL LPIYGSMVPFHVATVKSVSSQQDSNRTSYIRIIFNVPGTPFSPHDANSLKFQGSIYLK EVSFRSKDSRHIIEVVQQIKTLRRQVNSRESERAERATLVSQERLQLASAKFKPMKLH DLWIRPPFGGRGRKLTGSLEAHTNGFRYSTSRPDERVDVMFGNIKHAFFQPAEREMIT LVHFHLHNHIMVGNKKTKDVQFYIEVMDIVQTLGGGKRSAYDPDEIEEEQRERDRKNK INMDFQNFVNRVNDLWGQPQFKALDLEFDQPMRELGFHGVPHKASAFIVPTSNCLVEL IETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSTSLDGIKEW LNTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFLNMEVSDSESENSEESDQG YEPSDVQSDSGSEDEDDDSESLVESEDDEEEDSDEDSEEDEGKTWEELEREASYADRE KGDDSDSEEERKRRKMKAFGKGRVPDKRNPGGSLPKRAKLR" CDS 40160060..>40163125 /locus_tag="TCM_026816" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG026818t2" /codon_start=1 /product="Global transcription factor C isoform 2" /protein_id="EOY11734.1" /db_xref="Phytozome:POPTR_0013s00600.1" /db_xref="TAIR:AT4G10710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AQP4" /translation="MAESRNRNVKPANGKPPPAANTYAINLDNFSKRLKILYSHWNKH NADLWGASSALVIATPPVSEDLRYLKSSALNIWLVGYEFPETIMVFLKKQIHFLCSQK KASLLDVVKKSAREAVGVEVVIHVKAKGDDGTGLMDSIFRAIYSQTNSSDHAVPVVGH ISRETPEGKFLETWDEKLKNAKFELSDVTNGFSDLFAVKDETELTNVKKAAFLTSSVM RQFVVPKLEKVIDEERKVSHSALMDDTEKTILEPARIKVKLKAENIDICYPPIFQSGG EFDLKPSASSNDENLYYDSTSVIICALGSRYNSYCSNIARTFLIDANSLQSKAYEVLL KAQEAAIDALKSGNKVSSVYQAAVSVVEKDAPELAANLTKTAGTGIGLEFRESGLSLN AKNDRILKPGMVFNVSLGFQNLQTETKNPKTQKYSVLLADTVIVGEKVPDILTSKSSK AVKDVAYSFNEDDEEEEKLKVKAEDNGNDTLFSKTTLRSDNHEMSKEELRRQHQAELA RQKNEETARRLAGGGAVAADNRGAVKTVGDLIAYKNVNDLPPPRDLMIQVDQKNEAIL LPIYGSMVPFHVATVKSVSSQQDSNRTSYIRIIFNVPGTPFSPHDANSLKFQGSIYLK EVSFRSKDSRHIIEVVQQIKTLRRQVNSRESERAERATLVSQERLQLASAKFKPMKLH DLWIRPPFGGRGRKLTGSLEAHTNGFRYSTSRPDERVDVMFGNIKHAFFQPAEREMIT LVHFHLHNHIMVGNKKTKDVQFYIEVMDIVQTLGGGKRSAYDPDEIEEEQRERDRKNK INMDFQNFVNRVNDLWGQPQFKALDLEFDQPMRELGFHGVPHKASAFIVPTSNCLVEL IETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSTSLDGIKEW LNTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFLNMEVSDSESENSEESDQG YEPSDVQSDSGSEDEDDDSESLVESEDDEEEDSDEDSEEDEGKTWEELER" gene complement(40164376..40169410) /locus_tag="TCM_026818" /note="dbxref CacaoGD:Thecc1EG026818" mRNA complement(join(40164376..40168557,40169032..40169410)) /locus_tag="TCM_026818" /product="Global transcription factor C isoform 1" /inference="alignment:exonerate-protein:2:frave:gene22933" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026816t1" /inference="similar to AA sequence:Phytozome:Glyma18g05080.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:PASA:2:TSA:puevd3b025947t1a2; alternateUTRof:Thecc1EG026818t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12333t1" mRNA complement(join(40164376..40168562,40169032..40169407)) /locus_tag="TCM_026818" /product="Global transcription factor C isoform 1" /inference="alignment:exonerate-protein:2:frave:gene22933" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026816t1" /inference="similar to AA sequence:Phytozome:Glyma18g05080.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12333t1" CDS complement(40165353..40168550) /locus_tag="TCM_026818" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG026816t1" /codon_start=1 /product="Global transcription factor C isoform 1" /protein_id="EOY11735.1" /db_xref="Phytozome:Glyma18g05080.1" /db_xref="TAIR:AT4G10710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AQP4" /translation="MADHRNANGQPPNGTATGLGSVYSINLENFSKRLKALYSHWNEQ KSELWGSSDVLAVATPPPSEDLRYLKSSALNIWLLGYEFPETIMVFTKKQVHFLCSQK KASLLEVVKKSAKEAVEVDVVMHVKAKSDDGTALMDAIFRSIRAQYKGDENDAPVLGY IAREAPEGKLLETWAEKLKSATFQLTDVTNGLSDLFAVKDKEELMNVKKAAYLSYNVM NNVVVPKLENVIDEEKKITHATLMDETEKAIVNPQLAKVKLKPENVDICYPPIFQSGG EFDLRPSTASNEENLYYDSASVILCAVGARYNSYCSNIARTFLIDASPLQSKAYEVLL KAHEAAIGMLKSGSKISAVYQAALSVVEKDSPELILNLTKSAGTGIGVEFRESGLNLN AKNDRVVKAGMVFNVSLGFQNLQCESNKSKNRNFSLLLADTVIVGEQNAEVVTGKSSK AVKDVAYSFNEDEEEEENSVKAETNGSDPFMSKTVLRSDNHEISKEELRRQHQAELAR QKNEETARRLAGGSGTGDNRSVAKTSADLIAYKNVNDLPTPRDFMIQIDQKNEAVLLP IYGSMVPFHVATIRTVSSQQDTNRNCFIRIIFNVPGTPFSPHDSNSLKNQGAIYLKEV SFRSKDPRHISEVVQQIKTLRRHVVARESEKAERATLVTQEKLQLAGNRFKPIRLSDL WIRPPFGGRGRKIPGTLEVHVNGFRYSTTRADERVDIMYGNIKHAFFQPAEKEMITLL HFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKIN MDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVE TPFLVVTLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSTSLDGIKEWLD TTDLKYYESRLNLNWRQILKTITDDPQSFIENGGWEFLNLEASDSDSENSEDSDQGYE PSDIEPESESEDDDSGSESLVESEDEEEEDSEEDSEEEKGKTWEELEREASNADREKG HESDSEEDRRRRKMKTFGKSRAPPSSAISKRSKLR" CDS complement(40165353..40168550) /locus_tag="TCM_026818" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG026816t1" /codon_start=1 /product="Global transcription factor C isoform 1" /protein_id="EOY11736.1" /db_xref="Phytozome:Glyma18g05080.1" /db_xref="TAIR:AT4G10710.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AQP4" /translation="MADHRNANGQPPNGTATGLGSVYSINLENFSKRLKALYSHWNEQ KSELWGSSDVLAVATPPPSEDLRYLKSSALNIWLLGYEFPETIMVFTKKQVHFLCSQK KASLLEVVKKSAKEAVEVDVVMHVKAKSDDGTALMDAIFRSIRAQYKGDENDAPVLGY IAREAPEGKLLETWAEKLKSATFQLTDVTNGLSDLFAVKDKEELMNVKKAAYLSYNVM NNVVVPKLENVIDEEKKITHATLMDETEKAIVNPQLAKVKLKPENVDICYPPIFQSGG EFDLRPSTASNEENLYYDSASVILCAVGARYNSYCSNIARTFLIDASPLQSKAYEVLL KAHEAAIGMLKSGSKISAVYQAALSVVEKDSPELILNLTKSAGTGIGVEFRESGLNLN AKNDRVVKAGMVFNVSLGFQNLQCESNKSKNRNFSLLLADTVIVGEQNAEVVTGKSSK AVKDVAYSFNEDEEEEENSVKAETNGSDPFMSKTVLRSDNHEISKEELRRQHQAELAR QKNEETARRLAGGSGTGDNRSVAKTSADLIAYKNVNDLPTPRDFMIQIDQKNEAVLLP IYGSMVPFHVATIRTVSSQQDTNRNCFIRIIFNVPGTPFSPHDSNSLKNQGAIYLKEV SFRSKDPRHISEVVQQIKTLRRHVVARESEKAERATLVTQEKLQLAGNRFKPIRLSDL WIRPPFGGRGRKIPGTLEVHVNGFRYSTTRADERVDIMYGNIKHAFFQPAEKEMITLL HFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKIN MDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVE TPFLVVTLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSTSLDGIKEWLD TTDLKYYESRLNLNWRQILKTITDDPQSFIENGGWEFLNLEASDSDSENSEDSDQGYE PSDIEPESESEDDDSGSESLVESEDEEEEDSEEDSEEEKGKTWEELEREASNADREKG HESDSEEDRRRRKMKTFGKSRAPPSSAISKRSKLR" gene 40171802..40175662 /locus_tag="TCM_026819" /note="dbxref CacaoGD:Thecc1EG026819" mRNA join(40171802..40171987,40172101..40172216, 40172497..40172673,40172765..40172926,40173036..40173116, 40173318..40173369,40173641..40173755,40173858..40173939, 40174040..40174135,40174290..40174391,40174492..40174608, 40174703..40174819,40174956..40175662) /locus_tag="TCM_026819" /product="ATP-citrate lyase A-3" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400031893" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG010417t1" /inference="similar to AA sequence:Phytozome:PGSC0003DMP400031893" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06273t00001" CDS join(40172118..40172216,40172497..40172673, 40172765..40172926,40173036..40173116,40173318..40173369, 40173641..40173755,40173858..40173939,40174040..40174135, 40174290..40174391,40174492..40174608,40174703..40174819, 40174956..40175027) /locus_tag="TCM_026819" /note="paralog of Thecc1EG010417t1" /codon_start=1 /product="ATP-citrate lyase A-3" /protein_id="EOY11737.1" /db_xref="Phytozome:PGSC0003DMP400031893" /db_xref="TAIR:AT1G09430.1" /db_xref="UniProtKB/TrEMBL:UniRef50_O80526" /translation="MARKKIREYDSKRLLKEHLKRLANIHLQICSAQVTESTDFTELT NKEPWLSSTRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKARLGVEVEMGGCKAPI TTFIVEPFVPHEQEYYLSIVSERLGSIISFSECGGIEIEENWDKVKTIFLPTEKPMTQ ETCAPLIATLPLEVRGKIGDFIMGVFSVFQDLDFSFLEMNPFTLVNGEPYPLDMRGEL DDTAAFKNFKKWGDIEFPLPFGRVMSPTEGFIHSLDEKTSASLKFTVLNPKGRIWTMV AGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVVDCATANPDGRKRA LLIGGGIANFTDVAATFNGIIRALREKEAKLKAARMHVYVRRGGPNYQTGLARMRTLG EELGVPLEVYGPEATMTGICKEAIDCIMSEA" gene 40176700..40178520 /locus_tag="TCM_026820" /note="dbxref CacaoGD:Thecc1EG026820" mRNA join(40176700..40176956,40177178..40178520) /locus_tag="TCM_026820" /product="Class III peroxidase 70" /inference="alignment:exonerate- protein:2:Phytozome:Glyma02g01190.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004905t1" /inference="similar to AA sequence:Phytozome:GSVIVT01031311001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g15309t1" CDS join(40176735..40176956,40177178..40177945) /locus_tag="TCM_026820" /note="paralog of Thecc1EG004905t1" /codon_start=1 /product="Class III peroxidase 70" /protein_id="EOY11738.1" /db_xref="Phytozome:GSVIVT01031311001" /db_xref="TAIR:AT3G03670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q5U1M3" /translation="MQTLNSSCFCFTTFFLAIFLTISFSSATLKVGFYQSSCPSAEAA VRKAVDKAVSRNPGMAAALIRMHFHDCFVRGCDASVLLDSTPGRPSEKEHPANNPSLR GFEVIDQAKAEIEAQCPRTVSCADILAFAARDSAYKVGGIKYAVPSGRRDGRVSLRDE GFGNLPPPFFNAKQLEDNFARKGLNLDEMVTLSGAHSIGVSHCSSFSNRLFSFNATHL QDPSLDPEFARQLRKRCPAPGSSRDPTVPLDVLSPHRLDNKYYEVLKNHHGLLTSDQT LLSSRATAKIVRENARHGKAWAKKFTAAMVKMGYIDVLTGSKGEIRKNCRVVN" gene 40180245..40180905 /locus_tag="TCM_026821" /note="dbxref CacaoGD:Thecc1EG026821" mRNA 40180245..40180905 /locus_tag="TCM_026821" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30128.m008968" /inference="similar to AA sequence:Phytozome:POPTR_0013s00570.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g02097c00001" CDS 40180340..40180645 /locus_tag="TCM_026821" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11739.1" /db_xref="Phytozome:POPTR_0013s00570.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9PB70" /translation="MERVAKMLLISILVLVVLASNAEGRRLKEEEVDHPQNFLGGFGT SGGFVPTPGGGVGFGLGPSVFCAFPGTGCVRVQPTIPGGTTGTGTGTGTGTGTGTPP" mobile_element complement(40181732..40182007) /note="source:scaffold_3_CACTA_0377 4992 5243" /mobile_element_type="transposon:TIR/CACTA" gene 40182278..40187931 /locus_tag="TCM_026822" /note="dbxref CacaoGD:Thecc1EG026822" mRNA join(40182278..40182442,40183341..40183549, 40183619..40183687,40183815..40184117,40184483..40184691, 40184786..40184834,40184916..40185005,40185100..40185165, 40185375..40187116,40187707..40187931) /locus_tag="TCM_026822" /product="RING/U-box superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:ricco:30128.m008969" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004908t3" /inference="similar to AA sequence:Phytozome:POPTR_0002s19040.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12350t1" mRNA join(40182300..40182442,40183341..40183549, 40183815..40184109,40184483..40184691,40184786..40184834, 40184916..40185005,40185100..40185165,40185375..40187349) /locus_tag="TCM_026822" /product="RING/U-box superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:ricco:30128.m008969" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004908t3" /inference="similar to AA sequence:Phytozome:POPTR_0013s00560.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1196t3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12350t1" CDS join(40183382..40183549,40183619..40183687, 40183815..40184117,40184483..40184691,40184786..40184834, 40184916..40185005,40185100..40185165,40185375..40187024) /locus_tag="TCM_026822" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG004908t3" /codon_start=1 /product="RING/U-box superfamily protein, putative isoform 1" /protein_id="EOY11740.1" /db_xref="Phytozome:POPTR_0002s19040.1" /db_xref="TAIR:AT3G62240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GSY9" /translation="MDDGCAVCADTLEWVAYGPCGHREVCSTCIIRLRFICDDCRCCL CKSELKTIFITKFDRLKDLFGGNTSSFLETIVNFLAMGDFTKVINDFSAFAADPIEGQ VGPYWYHEGTQAYIDDLDHYKMIKAMCRLSCTVCDKKDEQRNTGSKRRAEFKNIEQLK SHLLNRHRLLMCSLCLEGRKVFMCEQKLYTRAQLKQHIKTGDSEVDGSESERGGFMGH PMCEFCQNPFYGENELYLHMSTEHYTCHICQRRHPGRYEYYRNYDDMEIHFRQEHHLC EDEACLAKKFIVFATESELKRHNAVEHGGRRMSRSKRNAALQIPISFQYRQSYEQDHR VRRHGSQSDSSDSQLSLAMQASLATANAESFHYTSTSGEVVVNNQETIGIGSIVGPFG ALATLDSEPSSRYCQALGNSRNGPLEDSSFPPLTAASNSSQQKLRNGSEGSARSSMAA CLRRRNNGTLTVPNTAQAWPVTSLQPNMSATGSHQSRPAINFSHLSTNSSSSFKSKHS RIKESLPSSHVSSSQGTFFGLTANFSSLSRSLVGTSKVGHSAIASTPNIVDGGFFDNS LSNFPPVSSAHVPKNAPTSSQPSPKVEDAQSANKALVEKIRASFEFDKDKYSAFKGIT AEYRQGVINAEEYLACVHQFGLSHLVLDIARLCPNVQKQRELEEAYNFNMTSSRFHKN GPSNDGGQSKNIKRSKKGKEKCEEDGISGLKHALADGVYNGEKVLQLNQKPYVEEAEV LRKDGHHAAKGKSKVFADEEANPHFPRYSQTLLGSKNGSQPAAGGSNKNLASGGGGHK PRKKASKFLRNRLGDASAAQVPDVGDSDPGPGQIEEKADENREPPEGLPVCGVWRNGG GRRLMGMTQRK" CDS join(40183996..40184109,40184483..40184691, 40184786..40184834,40184916..40185005,40185100..40185165, 40185375..40187024) /locus_tag="TCM_026822" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG004908t3" /codon_start=1 /product="RING/U-box superfamily protein, putative isoform 2" /protein_id="EOY11741.1" /db_xref="Phytozome:POPTR_0013s00560.1" /db_xref="TAIR:AT3G62240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GSY9" /translation="MNSGILGLRGEQSSRTLSSLRVTCSTGIGCLCAVCVWKVFMCEQ KLYTRAQLKQHIKTGDSEVDGSESERGGFMGHPMCEFCQNPFYGENELYLHMSTEHYT CHICQRRHPGRYEYYRNYDDMEIHFRQEHHLCEDEACLAKKFIVFATESELKRHNAVE HGGRRMSRSKRNAALQIPISFQYRQSYEQDHRVRRHGSQSDSSDSQLSLAMQASLATA NAESFHYTSTSGEVVVNNQETIGIGSIVGPFGALATLDSEPSSRYCQALGNSRNGPLE DSSFPPLTAASNSSQQKLRNGSEGSARSSMAACLRRRNNGTLTVPNTAQAWPVTSLQP NMSATGSHQSRPAINFSHLSTNSSSSFKSKHSRIKESLPSSHVSSSQGTFFGLTANFS SLSRSLVGTSKVGHSAIASTPNIVDGGFFDNSLSNFPPVSSAHVPKNAPTSSQPSPKV EDAQSANKALVEKIRASFEFDKDKYSAFKGITAEYRQGVINAEEYLACVHQFGLSHLV LDIARLCPNVQKQRELEEAYNFNMTSSRFHKNGPSNDGGQSKNIKRSKKGKEKCEEDG ISGLKHALADGVYNGEKVLQLNQKPYVEEAEVLRKDGHHAAKGKSKVFADEEANPHFP RYSQTLLGSKNGSQPAAGGSNKNLASGGGGHKPRKKASKFLRNRLGDASAAQVPDVGD SDPGPGQIEEKADENREPPEGLPVCGVWRNGGGRRLMGMTQRK" mRNA join(40184086..40184117,40184483..40184691, 40184786..40185005,40185100..40185165,40185375..40187349) /locus_tag="TCM_026822" /product="RING/U-box superfamily protein, putative isoform 3" /inference="alignment:exonerate- protein:2:ricco:30128.m008969" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004908t3" /inference="similar to AA sequence:Phytozome:POPTR_0013s00560.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is paralog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1147t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12350t1" CDS join(40184088..40184117,40184483..40184691, 40184786..40185005,40185100..40185165,40185375..40187024) /locus_tag="TCM_026822" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG004908t3" /codon_start=1 /product="RING/U-box superfamily protein, putative isoform 3" /protein_id="EOY11742.1" /db_xref="Phytozome:POPTR_0013s00560.1" /db_xref="TAIR:AT3G62240.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9GSY9" /translation="MCSLCLEGRKVFMCEQKLYTRAQLKQHIKTGDSEVDGSESERGG FMGHPMCEFCQNPFYGENELYLHMSTEHYTCHICQRRHPGRYEYYRNYDDMEVSSHFL FTFLVVVFILRFSIASEILLQIHFRQEHHLCEDEACLAKKFIVFATESELKRHNAVEH GGRRMSRSKRNAALQIPISFQYRQSYEQDHRVRRHGSQSDSSDSQLSLAMQASLATAN AESFHYTSTSGEVVVNNQETIGIGSIVGPFGALATLDSEPSSRYCQALGNSRNGPLED SSFPPLTAASNSSQQKLRNGSEGSARSSMAACLRRRNNGTLTVPNTAQAWPVTSLQPN MSATGSHQSRPAINFSHLSTNSSSSFKSKHSRIKESLPSSHVSSSQGTFFGLTANFSS LSRSLVGTSKVGHSAIASTPNIVDGGFFDNSLSNFPPVSSAHVPKNAPTSSQPSPKVE DAQSANKALVEKIRASFEFDKDKYSAFKGITAEYRQGVINAEEYLACVHQFGLSHLVL DIARLCPNVQKQRELEEAYNFNMTSSRFHKNGPSNDGGQSKNIKRSKKGKEKCEEDGI SGLKHALADGVYNGEKVLQLNQKPYVEEAEVLRKDGHHAAKGKSKVFADEEANPHFPR YSQTLLGSKNGSQPAAGGSNKNLASGGGGHKPRKKASKFLRNRLGDASAAQVPDVGDS DPGPGQIEEKADENREPPEGLPVCGVWRNGGGRRLMGMTQRK" gene 40187240..40190275 /locus_tag="TCM_026823" /note="dbxref CacaoGD:Thecc1EG026823" mRNA join(40187240..40187353,40188277..40188333, 40188748..40190275) /locus_tag="TCM_026823" /product="S-adenosylmethionine synthetase 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01033651001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021477t1" /inference="similar to AA sequence:ricco:30128.m008970" /note="quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g15331t1" CDS 40188758..40189939 /locus_tag="TCM_026823" /note="dbxref ricco:30128.m008970; paralog of Thecc1EG021477t1" /codon_start=1 /product="S-adenosylmethionine synthetase 1" /protein_id="EOY11743.1" /db_xref="TAIR:AT1G02500.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9EW46" /translation="MDTFLFTSESVNEGHPDKLCDQVSDAVLDACLEQDPESKVACET CTKTNMVMVFGEITTKAKVDYEKIVRDTCRNIGFVSDDVGLDADKCKVLVNIEQQSPD IAQGVHGHLTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGI CPWLRPDGKTQVTVEYQNDNGAMVPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPV IPDKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPT KVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKISDKEIL KIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ D" gene complement(40190324..40198954) /locus_tag="TCM_026825" /note="dbxref CacaoGD:Thecc1EG026825" mRNA complement(join(40190324..40190707,40190815..40191069, 40191188..40191359,40191496..40191723,40192105..40192238, 40192322..40192405,40192521..40192811,40192904..40193236, 40193318..40193391,40193497..40193631,40193708..40193861, 40194320..40194423,40194514..40194674,40195098..40195411, 40195595..40195899,40195964..40196269,40196381..40196471, 40196591..40196644,40196720..40196796,40196883..40197042, 40197169..40197253,40197366..40197454,40197568..40197691, 40197933..40198173,40198294..40198954)) /locus_tag="TCM_026825" /product="Pleiotropic drug resistance 9" /inference="alignment:exonerate- protein:2:Phytozome:Sb08g002910.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG038454t1" /inference="similar to AA sequence:Phytozome:GSVIVT01031314001" /note="quality class is strong, express is strong, homology is paralog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.73 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc478t27" CDS complement(join(40190441..40190707,40190815..40191069, 40191188..40191359,40191496..40191723,40192105..40192238, 40192322..40192405,40192521..40192811,40192904..40193236, 40193318..40193391,40193497..40193631,40193708..40193861, 40194320..40194423,40194514..40194674,40195098..40195411, 40195595..40195899,40195964..40196269,40196381..40196471, 40196591..40196644,40196720..40196796,40196883..40197042, 40197169..40197253,40197366..40197454,40197568..40197691, 40197933..40198120)) /locus_tag="TCM_026825" /note="paralog of Thecc1EG038454t1" /codon_start=1 /product="Pleiotropic drug resistance 9" /protein_id="EOY11744.1" /db_xref="Phytozome:GSVIVT01031314001" /db_xref="TAIR:AT3G53480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LFH0" /translation="MASMVDSEREGIDVEPGDEGKRVAMDPTRLRPQERHVFIDKLIR NIQTDNLHLLHNIRKRLDRVGVELPRVEVRYKNLRVEAECDVVHGTPLPTLWNSLKSP VSHPAARLMGSKSHQAKLCLISDVSGVIKPGRMTLLLGPPGCGKTSLLKALSGNLNQS LKVTGEVSYNGYKLEEFVPQKTSAYISQNDLHISEMTVRETLDFSAHCQGVGSRADIM MEVSRRELEAGIAPDPDVDTYMKATSVKGRKGKLQTDYVLKILGLDSCAETFVGDALR RGISGGQKKRLTTGEIVVGPIKTLFMDEITNGLDSSTAFQIVTCLQQLVHMTDATLLV SLLQPAPETFDLFDDIILMAEGKILYHGPRDHILEFFENCGFRCPQRKAVVDFLQEET FRLRTMQVLSKKDQAQYWYSTELPYSYFSVDMFVRKFKASPLGKSIDEDLLNPYDMSQ GHKDALSFSEYSVSKWEIFKACMSRELLLMRRNSIFYVFKITQLVIIACITMTVFYKS RMDIDILHANYYLAELFFTLMILVVDEFPEVFMTISRLPVFYKQKMLCFYPAWAYSIP AAILKLPMSFLQSLIWTSITYYVTGYTPEVSRFFRQCIMFFAVQLSGISLFRFVASLF QTFDTSVAASSLIIFLHWLFCGFIIPRPSWPGWMKWLFWVSPMSYAEIGLSGNEFLAP RWQQMLTMNTTIGQATLESRGLYFDEYFFWISIAALFGFSLVYNIGFTLALSFLKPPG SSRIIISRDKLSKIQKGDFNGVASVVKGVSHSDSSNKEPASKGRMVLPFEPLTLTFQD VQYYVDTPLELRKKGHAQKKLQLLSNVTGALRPGVLTALMGASGAGKTTLLDVLSGRK TIGCIEGEIKVGGYPKVQETFARISGYCEQNDIHSPQITVQESLIFSAWLRLAPHIDL KTKADFVKEVLETIELDDVKDALVGIPGLSGLSTEQRKRLTIAVELVANPSIIFMDEP TSSLDARAAAIVMRAVKNVADTGRTIICTIHQPSIDIFEAFDELILLKNSGSLIYFGP LGQHSCRVIEYFESIPGVPKIKDNCNPATWMLEVTSPPVEAELGVDFAQIYKNSTLYE NNEDVVRQLSNPPPGSRDLHFPTQFSQSYWGQFKSCLWKLNLSYWRSPAYNLTRFLQT VIISLALGLIFWNQGKKINNQQNLFNIFGSMYSAVVFLGMNSSSSVQPSVATERVVMY RERFAGMYSSWAYALAQVTIEVPYLFIQALVFEMITYPMIGYYGSAYKVLWYFYAMFC TQLYFTFFGMLFVSLTPDVTIAGALSSFFYPMLNLFSGFLIPPLKIPKWWIWLYYLMP TSWTLNCLLTSQYGDVNDEIMVFGQAKTVASLLEDYFGFHHDRLAITAIFLIIFPLIF AFLFAFFITRLNFERR" mobile_element 40198609..40198877 /note="source:scaffold_9_CACTA_0946 17917 18226" /mobile_element_type="transposon:TIR/CACTA" mobile_element 40198829..40198949 /note="source:CACAO_PIF_E119_scaffold_3 2153 2269" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(40199085..40210034) /locus_tag="TCM_026826" /note="dbxref CacaoGD:Thecc1EG026826" mRNA complement(join(40199085..40200047,40200126..40200380, 40200575..40200746,40200891..40201118,40201412..40201545, 40201668..40201751,40201854..40202144,40202705..40203037, 40203153..40203226,40203359..40203496,40203586..40203736, 40204014..40204117,40204200..40204360,40204536..40204849, 40205013..40205294,40205385..40205686,40205817..40205907, 40205991..40206044,40206233..40206309,40206410..40206569, 40206887..40206971,40207078..40207163,40207599..40207722, 40208179..40208804,40209486..40210034)) /locus_tag="TCM_026826" /product="Pleiotropic drug resistance 9" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031314001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021480t1" /inference="similar to AA sequence:Phytozome:GSVIVT01031314001" /note="quality class is strong, express is medium, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc3051t3" CDS complement(join(40199781..40200047,40200126..40200380, 40200575..40200746,40200891..40201118,40201412..40201545, 40201668..40201751,40201854..40202144,40202705..40203037, 40203153..40203226,40203359..40203496,40203586..40203736, 40204014..40204117,40204200..40204360,40204536..40204849, 40205013..40205294,40205385..40205686,40205817..40205907, 40205991..40206044,40206233..40206309,40206410..40206569, 40206887..40206971,40207078..40207163,40207599..40207722, 40208179..40208573)) /locus_tag="TCM_026826" /note="paralog of Thecc1EG021480t1" /codon_start=1 /product="Pleiotropic drug resistance 9" /protein_id="EOY11745.1" /db_xref="Phytozome:GSVIVT01031314001" /db_xref="TAIR:AT3G53480.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9LFH0" /translation="MAQMVGTDEIESLRIELSEVGRSLRSSFQLHASSLRSSSALSSG KDDAGVEYALQWAAIERLPTFERLRSSLVDKDNDGDNNGGMANGEGKRVIDVTKLGAL ERHIFMEKLIKHIENDNLQLLRKIRNRIDVVGVKLPTIEVRYKDLHVEAECEVVQGKP LPTLWTSFQRFFSDVVRLSGAKSHEAKISIINHASGIIRPGRMTLLLGPPGCGKTTLL KALSGNLDQSLKVTGEVSYNGYRLEEFVPQKTSAYISQSDLHIAEMTVRETLDFSARC QSVGSRADIMMEVSRREMEAGILPDADADTYMKAISVKGLKRTLQTDYILKILGLDIC ADTFVGNAMIRGISGGQKKRLTTGEMIVGPTKSLFMDEITNGLDSSTAFQIVTCLQQL AHITDATLLVSLLQPAPETFDLFDDIILMAEGKIVYHGPRDNILEFFKDCGFRCPERK GVADFIQEVISKKDQAQYWHSTELPYSYFSVDMFAGKFKESSLGKKLDEDLSVPYDKS HSHKNALSFTQYSLSKWELFRACMSRELLLMKRNSFVYVFKTSQLIVVAIITMTVFLR SRMHIDVLHGNYYMGALFFALVILLVDGIPEMSMTVARLEVFYKQKELRFYPAWAYAI PASILKIPLSFLESLVWTCLTYYVIGYSPEAWRFFRHFLLLFAVHLASISMFRFLAAV FQTAVASMTAGSFAILYVFLFGGFIITRSSMPVWLKWGFWVSPLTYGEIGLSVNEFLA PRWQRISSNSTIGGELLESRGLNFGGYLFWISLGALLGFTLVFNIGFTLALSFLKSPG SSRAIISHEKLSRIQGREDSSNGALGKEKSTNSPANNIKEPSKGRMVLPFEPLTVAFQ DLQYYIDTPLEMRERGFSQKKLQLLSDITGVLRPGILTALIGVSGAGKTTLLDVLAGR KTTGYTEGEIKIGGYPKVQETFARISGYCEQSDIHSPQITVEESVMFSAWLRLAPQID SKTKAEFVNQVLETIELDEIKDALVGIPGVSGLSTEQRKRLTIAVELVANPSVIFMDE PTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYSG PLGKHSSRVIDYFEAISGVPKIQTNYNPATWMLEVTSASAEAEKGLDFAQIYKDSALY ESNRELVRQFSTPPPGSRDLHFPTRFSRNAWGQFKSCLWKQHLSYWRSPSYNLNRIIH TSVASLLFGILFWKQGQKIDNQQNLFNILGSMFTAAIFLGISNCSSVLPYVATERTVM YRERFAGMYSAWSYALAQVTVEIPYLFIQSVIFVIITYPMIGYYGSAYKVFWYLYAMF CTMLYFNYLGMSLVSLTPNFILASILSSIFYTLFNLFAGFLIPQPQIPGWWIWLYYLN PTSWTMNGMLTSQYGDIDKEIMIFGETKTVASFLKDYFGFHHDRLGISALVLIAFPLA LASIFAYCVGRLNFQRR" mobile_element complement(40202534..40202611) /note="source:scaffold_6_CACTA_0709 2596 2681" /mobile_element_type="transposon:TIR/CACTA" mobile_element 40209136..40209192 /note="source:CACAO_M_E45237_F207_scaffold_6 2272 2329" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(40210291..40215105) /locus_tag="TCM_026828" /note="dbxref CacaoGD:Thecc1EG026828" mRNA complement(join(40210291..40210762,40211382..40211594, 40212315..40212444,40212565..40212735,40212805..40212927, 40213141..40213245,40213328..40214029,40214369..40214776)) /locus_tag="TCM_026828" /product="Interleukin-1 receptor-associated kinase, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s00520.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021485t1" /inference="similar to AA sequence:Phytozome:GSVIVT01031315001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaL_g15235t00001; inference alignment:Newbler:10:TSA:cgbaL_g15235t00001" CDS complement(join(40210640..40210762,40211382..40211594, 40212315..40212444,40212565..40212735,40212805..40212927, 40213141..40213245,40213328..40213992)) /locus_tag="TCM_026828" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG021485t1" /codon_start=1 /product="Interleukin-1 receptor-associated kinase, putative isoform 1" /protein_id="EOY11746.1" /db_xref="Phytozome:GSVIVT01031315001" /db_xref="TAIR:AT1G56720.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RFQ2" /translation="MATDLNAELSQKTAIFGLKVWEVIGIVVALFIIVILSLLSFCLT SRKKSRARNKIPLTQIPSVSKEIKEVRVEQVSTNEFVPRDGILLTIHDKSSDKESDKV LVHLGMGKSKNGDNSSQSGSFHHLDKDGAGSQSGEEGISGTVTVCKPSSSHPITAPSP LVGLPEFSHLGWGHWFTLRDLELATNRFSKDNVLGEGGYGVVYQGHLINGTPVAVKKI LNNVGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTNRMLVYEYVNNGNLEQWLHGA MRQHGYLTWEARIKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNAKVSDFG LAKLLGAGKSHVTTRVMGTFGYVAPEYANTGLLNEKSDVYSFGVVLLEAITGRDPVDY GRPSHEVNLVDWLKMMVGSRRSEEVVDPNIEVRPSTRALKRALLTALRCVDPDSEKRP KMGQVVRMLESEEYPIPREDRRHRRNHGSSLEIDSQRDNSDTDRSDYPASRSESKRMQ S" mRNA complement(join(40210739..40210762,40211382..40211594, 40212141..40212186,40212315..40212444,40212565..40212735, 40212805..40212927,40213141..40213245,40213328..40214029, 40214369..40215105)) /locus_tag="TCM_026828" /product="Interleukin-1 receptor-associated kinase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s00520.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021485t1" /inference="similar to AA sequence:Phytozome:GSVIVT01031315001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1076t2; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1076t2; inference alignment:Newbler:10:TSA:cgbaL_g15235t00001" CDS complement(join(40211521..40211594,40212141..40212186, 40212315..40212444,40212565..40212735,40212805..40212927, 40213141..40213245,40213328..40213992)) /locus_tag="TCM_026828" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG021485t1" /codon_start=1 /product="Interleukin-1 receptor-associated kinase isoform 2" /protein_id="EOY11747.1" /db_xref="Phytozome:GSVIVT01031315001" /db_xref="TAIR:AT1G56720.3" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RFQ2" /translation="MATDLNAELSQKTAIFGLKVWEVIGIVVALFIIVILSLLSFCLT SRKKSRARNKIPLTQIPSVSKEIKEVRVEQVSTNEFVPRDGILLTIHDKSSDKESDKV LVHLGMGKSKNGDNSSQSGSFHHLDKDGAGSQSGEEGISGTVTVCKPSSSHPITAPSP LVGLPEFSHLGWGHWFTLRDLELATNRFSKDNVLGEGGYGVVYQGHLINGTPVAVKKI LNNVGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTNRMLVYEYVNNGNLEQWLHGA MRQHGYLTWEARIKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNAKVSDFG LAKLLGAGKSHVTTRVMGTFGYVAPEYANTGLLNEKSDVYSFGVVLLEAITGRDPVDY GRPSHEVYSLFPAHHGLLLELSKFGRLAENDGGKQEVRGSGRPKY" mobile_element complement(40212104..40212145) /note="source:INTACT1_F64_scaffold_3-int 6243 6284" /mobile_element_type="retrotransposon:LTR/Copia" gene 40214540..40219422 /locus_tag="TCM_026829" /note="dbxref CacaoGD:Thecc1EG026829" mRNA join(40214540..40215124,40219157..40219422) /locus_tag="TCM_026829" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.67 coverage" CDS 40214597..40214935 /locus_tag="TCM_026829" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11748.1" /translation="MICFLGKCGGESKLEWSYLVPEMRLRVKAKAKAKAKPEMTRKGP KLREVDGDGMVNGAKGGEDNKRREEGMELSVVGDEFRCLTPHYMFTNTYSKTQACILQ NNCLTPSSSL" gene complement(40215843..40218036) /locus_tag="TCM_026830" /note="dbxref CacaoGD:Thecc1EG026830" mRNA complement(join(40215843..40216068,40216168..40216214, 40216309..40216747,40217961..40218036)) /locus_tag="TCM_026830" /product="Uncharacterized protein" /note="quality class is weak, express is weak, homology is none, intron is none, protein is complete" CDS complement(join(40215911..40216068,40216168..40216214, 40216309..40216433)) /locus_tag="TCM_026830" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11749.1" /translation="MPCIPAHCVWTATLHPLPTFCNSVATPRFPLPKLDLSYMHFSTS CFLPTFQPERTILAMFCFEFCPGEPGWLLHCNIGYHPLNLMQGSIYQNQYNQRLNLSF LFILLGC" gene 40219600..40225775 /locus_tag="TCM_026831" /note="dbxref CacaoGD:Thecc1EG026831" mRNA join(40219600..40219739,40219834..40219972, 40220058..40220147,40220491..40220581,40220829..40221316, 40221777..40221900,40222035..40222144,40222478..40222589, 40222762..40222854,40223009..40223070,40223150..40223280, 40223376..40223446,40223545..40223597,40224211..40224277, 40224354..40224487,40224883..40225775) /locus_tag="TCM_026831" /product="Serine/threonine-protein kinase Haspin, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031316001" /inference="similar to AA sequence:Phytozome:GSVIVT01031316001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1000t8; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1000t8" mRNA join(40219616..40219739,40219834..40219972, 40220058..40220147,40220491..40220581,40220829..40221316, 40221777..40221900,40222035..40222144,40222478..40222589, 40222762..40222854,40223009..40223070,40223150..40223280, 40223376..40223446,40223545..40223597,40224211..40224277, 40224354..40224487,40224946..40225732) /locus_tag="TCM_026831" /product="Serine/threonine-protein kinase Haspin, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031316001" /inference="similar to AA sequence:Phytozome:GSVIVT01031316001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12361t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12361t2; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1000t8" CDS join(40219724..40219739,40219834..40219972, 40220058..40220147,40220491..40220581,40220829..40221316, 40221777..40221900,40222035..40222144,40222478..40222589, 40222762..40222854,40223009..40223070,40223150..40223280, 40223376..40223446,40223545..40223597,40224211..40224277, 40224354..40224487,40224883..40225030) /locus_tag="TCM_026831" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Serine/threonine-protein kinase Haspin, putative isoform 1" /protein_id="EOY11750.1" /db_xref="Phytozome:GSVIVT01031316001" /db_xref="TAIR:AT1G09450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RFQ3" /translation="MDRKAASGEVGIWSEIIASESEEHQSRKRVQVIYQRRRPSAHGH TTPQETLLVEEVAPNNRNRLSLAAANKRVSWNRSLSTRGRTSIAVAPCVKNQPQQKQA KRRGKPPVPKGKLAEPPSFEKEREYFQEVDAFELLEESPSPKNFGTWAMGNQSVTDLV PLVSSRLEKWLFSKKLNFSCGPSSTLSKILETPAAPLDSIYSDDLDSSRLRTPEKSIQ ISASSVDGGCEDINAAIKKLSLVTSSDLDGVDPFSALLEICQQLAPLRFFELFSKYCD PESITKVGEGTYGEAFRAGNTVCKIVPFDGDFPVNGEVQKKSEELLEEAVLSQTLNSL REFENGVFNACTTFIETIDLKVCQGSYDAALIRAWEKWDEKNDSQNDHPKEFPEKQCY VVFVLQHGGKDLESFVLKNFDEARSLLVQVTAALAVAEAAYEFEHRDLHWGNILLSRN DSVTSKFILEGKQMFIRTFGLSISIIDFTLSRINTGESILFLDLSMDPYLFKGPKGDK QSETYRKMKEVTEDYWEGSFPRTNVLWLLYLVDILLLKKTFARSSTNERELRSLKKRL DKCNSAREAIFDPLFGDLLVAQTTPCEYPRATSHPVVYDQQIAFYLLTRNSDDMFQKL PTYIHMTWVYLQSLNLHC" CDS join(40219724..40219739,40219834..40219972, 40220058..40220147,40220491..40220581,40220829..40221316, 40221777..40221900,40222035..40222144,40222478..40222589, 40222762..40222854,40223009..40223070,40223150..40223280, 40223376..40223446,40223545..40223597,40224211..40224277, 40224354..40224487,40224946) /locus_tag="TCM_026831" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Serine/threonine-protein kinase Haspin, putative isoform 2" /protein_id="EOY11751.1" /db_xref="Phytozome:GSVIVT01031316001" /db_xref="TAIR:AT1G09450.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RFQ3" /translation="MDRKAASGEVGIWSEIIASESEEHQSRKRVQVIYQRRRPSAHGH TTPQETLLVEEVAPNNRNRLSLAAANKRVSWNRSLSTRGRTSIAVAPCVKNQPQQKQA KRRGKPPVPKGKLAEPPSFEKEREYFQEVDAFELLEESPSPKNFGTWAMGNQSVTDLV PLVSSRLEKWLFSKKLNFSCGPSSTLSKILETPAAPLDSIYSDDLDSSRLRTPEKSIQ ISASSVDGGCEDINAAIKKLSLVTSSDLDGVDPFSALLEICQQLAPLRFFELFSKYCD PESITKVGEGTYGEAFRAGNTVCKIVPFDGDFPVNGEVQKKSEELLEEAVLSQTLNSL REFENGVFNACTTFIETIDLKVCQGSYDAALIRAWEKWDEKNDSQNDHPKEFPEKQCY VVFVLQHGGKDLESFVLKNFDEARSLLVQVTAALAVAEAAYEFEHRDLHWGNILLSRN DSVTSKFILEGKQMFIRTFGLSISIIDFTLSRINTGESILFLDLSMDPYLFKGPKGDK QSETYRKMKEVTEDYWEGSFPRTNVLWLLYLVDILLLKKTFARSSTNERELRSLKKRL DKCNSAREAIFDPLFGDLLVAQTTPCE" gene 40226190..40229580 /locus_tag="TCM_026832" /note="dbxref CacaoGD:Thecc1EG026832" mRNA join(40226190..40226559,40226699..40226770, 40227024..40228508,40228622..40228718,40228808..40229475) /locus_tag="TCM_026832" /product="O-Glycosyl hydrolases family 17 protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031317001" /inference="similar to AA sequence:Phytozome:POPTR_0013s00510.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc927t5" mRNA join(40226591..40226770,40227024..40228718, 40228808..40229580) /locus_tag="TCM_026832" /product="O-Glycosyl hydrolases family 17 protein, putative isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031317001" /inference="similar to AA sequence:Phytozome:POPTR_0013s00510.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.71 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc943t6; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc927t5" mRNA join(40226591..40226770,40227024..40228508, 40228626..40228718,40228808..40229580) /locus_tag="TCM_026832" /product="O-Glycosyl hydrolases family 17 protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031317001" /inference="similar to AA sequence:Phytozome:POPTR_0013s00510.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.69 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc943t3; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc927t5" CDS join(40226701..40226770,40227024..40228508, 40228622..40228718,40228808..40228994) /locus_tag="TCM_026832" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="O-Glycosyl hydrolases family 17 protein, putative isoform 1" /protein_id="EOY11752.1" /db_xref="Phytozome:POPTR_0013s00510.1" /translation="MMAKGASNCLFLSLLFLLIICSSGTLVGFSYHARGKTAAPSTRR TMSFLQMNKVSPSQIRVFVADHKVLSPLSNSGVSVDLYLNESLVENLRSSNLSAISWL KTHLLALLPHVDIKSIVVTRINDDFRGQTELIKLLSTLKSIHSLLSSFNLHREVKVSV AFSSSFLQNIKSKTFERDLRRIFGFIKKTGSSVIVEAVVDGEMSMGDQFVQSVIEGAT LATSALPYNSVPIVLTMKSTAVPSPTEAAEFTAKVERCLANNIEITTRVAALYAEVST MEDFVQNGHEGEEEQIFLSSRRELLSSVKETTHDVIIPPPTTALPTAPSSTSPVSIPP NNPTPTIVTVPSTNPITVTPTNPADTPAPIPTTTPVTVPSTNPNNPTVPITNPVTTPA PITVPGAQPVTNPVTTYPAPTGGVPVSTPVTNPVTPPATTNAPAIPGQSWCVARTGAS ETSLQAALDYACGMGGADCSQIQQGANCYNPNTPQNHASYAFNSYYQKNPAPTSCDFG GTATIVNTNPSSGSCIYPSSASQSTPTATPATSSSTAGAGVPGSVTPPSVLNSSTPGS ATTTVFGSDTPPSVNTSTSMSAGLQPFMSCFILLTSSVAGVIFLDV" CDS join(40226701..40226770,40227024..40228508, 40228626..40228718,40228808..40228833) /locus_tag="TCM_026832" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="O-Glycosyl hydrolases family 17 protein, putative isoform 2" /protein_id="EOY11753.1" /db_xref="Phytozome:POPTR_0013s00510.1" /translation="MMAKGASNCLFLSLLFLLIICSSGTLVGFSYHARGKTAAPSTRR TMSFLQMNKVSPSQIRVFVADHKVLSPLSNSGVSVDLYLNESLVENLRSSNLSAISWL KTHLLALLPHVDIKSIVVTRINDDFRGQTELIKLLSTLKSIHSLLSSFNLHREVKVSV AFSSSFLQNIKSKTFERDLRRIFGFIKKTGSSVIVEAVVDGEMSMGDQFVQSVIEGAT LATSALPYNSVPIVLTMKSTAVPSPTEAAEFTAKVERCLANNIEITTRVAALYAEVST MEDFVQNGHEGEEEQIFLSSRRELLSSVKETTHDVIIPPPTTALPTAPSSTSPVSIPP NNPTPTIVTVPSTNPITVTPTNPADTPAPIPTTTPVTVPSTNPNNPTVPITNPVTTPA PITVPGAQPVTNPVTTYPAPTGGVPVSTPVTNPVTPPATTNAPAIPGQSWCVARTGAS ETSLQAALDYACGMGGADCSQIQQGANCYNPNTPQNHASYAFNSYYQKNPAPTSCDFG GTATIVNTNPMDLAFTHLLHHNQLQLQHQQQVHPQQGQAYQAPSPHLLC" CDS join(40226701..40226770,40227024..40228549) /locus_tag="TCM_026832" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="O-Glycosyl hydrolases family 17 protein, putative isoform 3" /protein_id="EOY11754.1" /db_xref="Phytozome:POPTR_0013s00510.1" /translation="MMAKGASNCLFLSLLFLLIICSSGTLVGFSYHARGKTAAPSTRR TMSFLQMNKVSPSQIRVFVADHKVLSPLSNSGVSVDLYLNESLVENLRSSNLSAISWL KTHLLALLPHVDIKSIVVTRINDDFRGQTELIKLLSTLKSIHSLLSSFNLHREVKVSV AFSSSFLQNIKSKTFERDLRRIFGFIKKTGSSVIVEAVVDGEMSMGDQFVQSVIEGAT LATSALPYNSVPIVLTMKSTAVPSPTEAAEFTAKVERCLANNIEITTRVAALYAEVST MEDFVQNGHEGEEEQIFLSSRRELLSSVKETTHDVIIPPPTTALPTAPSSTSPVSIPP NNPTPTIVTVPSTNPITVTPTNPADTPAPIPTTTPVTVPSTNPNNPTVPITNPVTTPA PITVPGAQPVTNPVTTYPAPTGGVPVSTPVTNPVTPPATTNAPAIPGQSWCVARTGAS ETSLQAALDYACGMGGADCSQIQQGANCYNPNTPQNHASYAFNSYYQKNPAPTSCDFG GTATIVNTNPSNSSLLFACLLVC" gene complement(40229564..40234805) /locus_tag="TCM_026833" /note="dbxref CacaoGD:Thecc1EG026833" mRNA complement(join(40229564..40230498,40230996..40231097, 40231223..40231684,40233185..40233288,40233446..40233793, 40234517..40234805)) /locus_tag="TCM_026833" /product="Encodes alpha-helical IF-like protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s00560.1" /inference="similar to AA sequence:Phytozome:GSVIVT01031318001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.83 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc790t2_C1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12455t2" mRNA complement(join(40229564..40230498,40230996..40231097, 40231223..40231684,40233450..40233793)) /locus_tag="TCM_026833" /product="Encodes alpha-helical IF-like protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s00560.1" /inference="similar to AA sequence:frave:gene22923" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc790t4_C1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12455t2" mRNA complement(join(40229575..40230498,40230996..40231097, 40231223..40231684,40233185..40233292,40233450..40233793, 40234517..40234534)) /locus_tag="TCM_026833" /product="Encodes alpha-helical IF-like protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s00560.1" /inference="similar to AA sequence:Phytozome:POPTR_0005s00560.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12455t2" CDS complement(join(40230331..40230498,40230996..40231097, 40231223..40231684,40233450..40233653)) /locus_tag="TCM_026833" /note="encoded by transcript variant 3; alternatively spliced; dbxref frave:gene22923" /codon_start=1 /product="Encodes alpha-helical IF-like protein isoform 3" /protein_id="EOY11757.1" /db_xref="TAIR:AT5G26770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BJU0" /translation="MSVSDQSAVSSSSQPVLPRDFDPLLKDLNEKKQSFRRNVVSLAA ELKEVRSRLASQEQSFAEETLTRQYLSELDDLRSQLSVTQATADASAASAQSAQLQCL ALIKELDEKNSSLREHEDRVTRLGEQLDNLQKDLQARESSQKQLKDEVLRIEHDIMQA VAKAGANKDCELRKLLDEVSPKNYENINKLLTVKDEEIVKLKDEIRIMSAHWKLKTKE LESQLEKQRRADQELKKRVLKLEFCLQEARAQTRKLQRMGERRDKAIKELRDQLAAKQ QCGAVGAEKQNIWETSGFKIVVSMSMLILVVFSKR" CDS complement(join(40230331..40230498,40230996..40231097, 40231223..40231684,40233185..40233292,40233450..40233653)) /locus_tag="TCM_026833" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Encodes alpha-helical IF-like protein isoform 1" /protein_id="EOY11755.1" /db_xref="Phytozome:POPTR_0005s00560.1" /db_xref="TAIR:AT5G26770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BJU0" /translation="MSVSDQSAVSSSSQPVLPRDFDPLLKDLNEKKQSFRRNVVSLAA ELKEVRSRLASQEQSFAEETLTRQEAETKARNMEEEIFRLQTRLEERNGQLQASASAA EKYLSELDDLRSQLSVTQATADASAASAQSAQLQCLALIKELDEKNSSLREHEDRVTR LGEQLDNLQKDLQARESSQKQLKDEVLRIEHDIMQAVAKAGANKDCELRKLLDEVSPK NYENINKLLTVKDEEIVKLKDEIRIMSAHWKLKTKELESQLEKQRRADQELKKRVLKL EFCLQEARAQTRKLQRMGERRDKAIKELRDQLAAKQQCGAVGAEKQNIWETSGFKIVV SMSMLILVVFSKR" CDS complement(join(40230331..40230498,40230996..40231097, 40231223..40231684,40233185..40233288,40233446..40233653)) /locus_tag="TCM_026833" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Encodes alpha-helical IF-like protein isoform 2" /protein_id="EOY11756.1" /db_xref="Phytozome:GSVIVT01031318001" /db_xref="TAIR:AT5G26770.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BJU0" /translation="MSVSDQSAVSSSSQPVLPRDFDPLLKDLNEKKQSFRRNVVSLAA ELKEVRSRLASQEQSFAEETLTRQASETKARNMEEEIFRLQTRLEERNGQLQASASAA EKYLSELDDLRSQLSVTQATADASAASAQSAQLQCLALIKELDEKNSSLREHEDRVTR LGEQLDNLQKDLQARESSQKQLKDEVLRIEHDIMQAVAKAGANKDCELRKLLDEVSPK NYENINKLLTVKDEEIVKLKDEIRIMSAHWKLKTKELESQLEKQRRADQELKKRVLKL EFCLQEARAQTRKLQRMGERRDKAIKELRDQLAAKQQCGAVGAEKQNIWETSGFKIVV SMSMLILVVFSKR" gene 40235057..40238775 /locus_tag="TCM_026836" /note="dbxref CacaoGD:Thecc1EG026836" mRNA join(40235057..40237689,40237875..40237926, 40238289..40238775) /locus_tag="TCM_026836" /product="Pentatricopeptide repeat superfamily protein, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s00430.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s00430.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1403t2" mRNA join(<40235450..40235475,40235569..40238309) /locus_tag="TCM_026836" /product="Pentatricopeptide repeat superfamily protein, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s00430.1" /inference="similar to AA sequence:Phytozome:POPTR_0013s00430.1" /note="transcript variant 2; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog medium, intron is medium, protein is partial5; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1381t6; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc1403t2" CDS join(<40235452..40235475,40235569..40237725) /locus_tag="TCM_026836" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein, putative isoform 2" /protein_id="EOY11759.1" /db_xref="Phytozome:POPTR_0013s00430.1" /db_xref="TAIR:AT3G53700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N416" /translation="ALWCIGSQFSSKLPRWLNLRGRYFSISYANTVLLNSETDPNPPY VDDFEAKIKFLRNNLYPDSLIRVLDKTQDLNSALKIFKWAALQKRFNHTANTYYHIIL KLGLAGNITEMDHFCLNWARDKCAGTEEALTVLIDTFVRHSRLNEASRVLVHMTLGGY NPSVNVFNDLLGAFVKEKRDFQHVLFVYKEMVKAGVLPTVDTLNSLLDVLFETNRVES GLDQFRRMRKKGCSPSGRTFEIVIKGLIVNGRVDEAVLILDEMLELGCSPDMGFYTCI VPLFCQENRLEQGMQLFRLMRASNLVPDSLICRKLIRCLCMNLHLDDATNVLQEMIEI GEIPPADSFVDIVNGFCEGEKYIEAIHFLENNCGNLTSPHKALLEGCCRAGKFFLGKD LLEKMSEGGIADCDSWNILIRWICEKVGIKKANELLGRMIVQSLVPDCGTYAALVVGN CKLNKYEDALGLFYYIHSKCWVLDSICYSRLVEALCRLEKITEAVEVYYYMSKSGCLL EATAFNMLIKAACDVGKVDEAIKMRSLAYYSGTSCTSLTYTTIMLGLHKSERAKDVLV MVSQMLIGGCAINAEAYCILIRSMSTLNRFKECALFFKLMLNEGLMPDSEAMHDLLSC LANHSQLHLLSKDINKIISRMEILESAMYNLLINGLWKEGCKSEACLLLDLMLEKGWV PDATTHTLLIGSNVKEVTSRGTTMHENSMEQDNVSNILAEGLGK" CDS join(40235542..40237689,40237875..40237926, 40238289..40238308) /locus_tag="TCM_026836" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Pentatricopeptide repeat superfamily protein, putative isoform 1" /protein_id="EOY11758.1" /db_xref="Phytozome:POPTR_0013s00430.1" /db_xref="TAIR:AT3G53700.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N416" /translation="MVLKLSTLKFSSKLPRWLNLRGRYFSISYANTVLLNSETDPNPP YVDDFEAKIKFLRNNLYPDSLIRVLDKTQDLNSALKIFKWAALQKRFNHTANTYYHII LKLGLAGNITEMDHFCLNWARDKCAGTEEALTVLIDTFVRHSRLNEASRVLVHMTLGG YNPSVNVFNDLLGAFVKEKRDFQHVLFVYKEMVKAGVLPTVDTLNSLLDVLFETNRVE SGLDQFRRMRKKGCSPSGRTFEIVIKGLIVNGRVDEAVLILDEMLELGCSPDMGFYTC IVPLFCQENRLEQGMQLFRLMRASNLVPDSLICRKLIRCLCMNLHLDDATNVLQEMIE IGEIPPADSFVDIVNGFCEGEKYIEAIHFLENNCGNLTSPHKALLEGCCRAGKFFLGK DLLEKMSEGGIADCDSWNILIRWICEKVGIKKANELLGRMIVQSLVPDCGTYAALVVG NCKLNKYEDALGLFYYIHSKCWVLDSICYSRLVEALCRLEKITEAVEVYYYMSKSGCL LEATAFNMLIKAACDVGKVDEAIKMRSLAYYSGTSCTSLTYTTIMLGLHKSERAKDVL VMVSQMLIGGCAINAEAYCILIRSMSTLNRFKECALFFKLMLNEGLMPDSEAMHDLLS CLANHSQLHLLSKDINKIISRMEILESAMYNLLINGLWKEGCKSEACLLLDLMLEKGW VPDATTHTLLIGSNVKEVTSRGTTMHENSMEQDNALCDGSFFNGIVIVVMRGDWLLF" gene complement(40238933..40240170) /locus_tag="TCM_026837" /note="dbxref CacaoGD:Thecc1EG026837" mRNA complement(40238933..40240170) /locus_tag="TCM_026837" /product="DNA binding protein, putative" /inference="alignment:exonerate- protein:2:ricco:30128.m008977" /inference="similar to AA sequence:ricco:30128.m008977" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12459t2" CDS complement(40239324..40240076) /locus_tag="TCM_026837" /note="dbxref ricco:30128.m008977" /codon_start=1 /product="DNA binding protein, putative" /protein_id="EOY11760.1" /db_xref="TAIR:AT1G09520.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9RFQ8" /translation="MTMTLGRNNLRMNLPTTSTKLTCQTLGNPSKECSNCGAHVPHFL HQVRLLGIQRRLCTSCVLRLHPSSFCPACFAFYGGTLPHPSKRIACSNCSSFTHSHCA GDNLLSSYLCPPCKDSSFSFFPLKDNKIDKKLALALLCAAKIASSSMGKAVTVAWAEA DRKVREAALARKRAREALEHLLYITREERARKENDNVSVDLSDANLAKVEDLDLDMDN GDGDGDGDIDVDLVRQLEDSLVKDEDIDCKFN" gene complement(40240316..40245025) /locus_tag="TCM_026838" /note="dbxref CacaoGD:Thecc1EG026838" mRNA complement(join(40240316..40241001,40241543..40243452, 40243539..40243888,40244564..40245025)) /locus_tag="TCM_026838" /product="MuDR family transposase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s00410.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021500t3" /inference="similar to AA sequence:Phytozome:POPTR_0013s00410.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is weak, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1240t7" mRNA complement(join(40240411..40241001,40241494..40243452, 40243539..40243888,40244564..40244733)) /locus_tag="TCM_026838" /product="MuDR family transposase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s00410.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021500t3" /inference="similar to AA sequence:Phytozome:POPTR_0013s00410.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1291t4; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1240t7; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g15322t1" mRNA complement(join(40240667..40241001,40241490..40243452, 40243539..40243888,40244564..40244695)) /locus_tag="TCM_026838" /product="MuDR family transposase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s00410.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021500t3" /inference="similar to AA sequence:Phytozome:POPTR_0013s00410.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.77 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1240t1; alternateUTRof:Thecc1EG026838t2; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1240t7; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g15322t1" CDS complement(join(40240886..40241001,40241543..40243452, 40243539..40243885)) /locus_tag="TCM_026838" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG021500t3" /codon_start=1 /product="MuDR family transposase isoform 1" /protein_id="EOY11761.1" /db_xref="Phytozome:POPTR_0013s00410.1" /db_xref="TAIR:AT1G64260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BJU6" /translation="MASKKIIAICQSGGEFETDKDGSLSYRGGDAHAIDIDDQMKFND FRMEVAEMFNCNIETMSIKYFLPGNKKTLITVSNDKDLQRMIKFHGDSVTADVYIIME EIVAPDVSNMPASRSSRTTLSEAVPPLDPPLDVVDNIVDDTTQLHLPIGASLDVVDTN HIDAHIDLPPEISSILPLAVSVNEKHAKGAQQWQNTITGVGQRFSGVHEFRESLRKYA IAHQFAFRYKKNDSHRVTVKCKAEGCPWRIHASRLSTTQLICIKKMNPTHTCEGAVVT TGHQATRSWVASIIKEKLKVFPNYKPKDIVNDIKQEYGIQLNYFQAWRGKEIAKEQLQ GSYKEAYSQLPYFCERIMETNPGSFATFTTKEDSSFHRLFISFHASLCGFVQGCRPLL FLDSIPLKSKYQGTLLAATAADGDDSVFPVAFSVVDAETDDNWHWFLLQLKSALSTSC PITFIADRQKGLRESISEIFKGSYHGYCLRYLTEQLIRDLKGQFSHEVKRLMIEDLYA AALAPRPEGFQRSIESIKSISLEAYNWIIQSEPQKWANSFFQGARYNHMTSNFGELFY SWASDAHELPITQMVDLIRGKIMELIYTRRADSDQWLTRLTPSMEEKLEKESLNVRPL QVLLTSGSIFEVRGESIEVVDMDRWDCSCKGWQLTGLPCCHAIAVISCIGRSPYDYCS RYFTTESYRLTYAETVQPIPDVDRALQKDSSQALVTVTPPPTRRPPGRPTTKKVGSQE VMKRQLQCSRCKGIRLRIKCIRFCTSNNYLEVVERHGGSSAVNINNEINC" mRNA complement(join(40240972..40243452,40243539..40243888, 40244564..40244733)) /locus_tag="TCM_026838" /product="MuDR family transposase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s00410.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG021500t3" /inference="similar to AA sequence:Phytozome:POPTR_0013s00410.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.62 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1291t3; alternateUTRof:Thecc1EG026838t2; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc1240t7; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g15322t1" CDS complement(join(40241502..40243452,40243539..40243885)) /locus_tag="TCM_026838" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG021500t3" /codon_start=1 /product="MuDR family transposase isoform 2" /protein_id="EOY11762.1" /db_xref="Phytozome:POPTR_0013s00410.1" /db_xref="TAIR:AT1G64260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BJU6" /translation="MASKKIIAICQSGGEFETDKDGSLSYRGGDAHAIDIDDQMKFND FRMEVAEMFNCNIETMSIKYFLPGNKKTLITVSNDKDLQRMIKFHGDSVTADVYIIME EIVAPDVSNMPASRSSRTTLSEAVPPLDPPLDVVDNIVDDTTQLHLPIGASLDVVDTN HIDAHIDLPPEISSILPLAVSVNEKHAKGAQQWQNTITGVGQRFSGVHEFRESLRKYA IAHQFAFRYKKNDSHRVTVKCKAEGCPWRIHASRLSTTQLICIKKMNPTHTCEGAVVT TGHQATRSWVASIIKEKLKVFPNYKPKDIVNDIKQEYGIQLNYFQAWRGKEIAKEQLQ GSYKEAYSQLPYFCERIMETNPGSFATFTTKEDSSFHRLFISFHASLCGFVQGCRPLL FLDSIPLKSKYQGTLLAATAADGDDSVFPVAFSVVDAETDDNWHWFLLQLKSALSTSC PITFIADRQKGLRESISEIFKGSYHGYCLRYLTEQLIRDLKGQFSHEVKRLMIEDLYA AALAPRPEGFQRSIESIKSISLEAYNWIIQSEPQKWANSFFQGARYNHMTSNFGELFY SWASDAHELPITQMVDLIRGKIMELIYTRRADSDQWLTRLTPSMEEKLEKESLNVRPL QVLLTSGSIFEVRGESIEVVDMDRWDCSCKGWQLTGLPCCHAIAVISCIGRSPYDYCS RYFTTESYRLTYAETVQPIPDVDRALQKDSSQALVTVTPPPTRRPPGRPTTKKVGSQE VMKRQLQCSRCKGLGHNKSTCKELL" CDS complement(join(40241502..40243452,40243539..40243885)) /locus_tag="TCM_026838" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG021500t3" /codon_start=1 /product="MuDR family transposase isoform 2" /protein_id="EOY11763.1" /db_xref="Phytozome:POPTR_0013s00410.1" /db_xref="TAIR:AT1G64260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BJU6" /translation="MASKKIIAICQSGGEFETDKDGSLSYRGGDAHAIDIDDQMKFND FRMEVAEMFNCNIETMSIKYFLPGNKKTLITVSNDKDLQRMIKFHGDSVTADVYIIME EIVAPDVSNMPASRSSRTTLSEAVPPLDPPLDVVDNIVDDTTQLHLPIGASLDVVDTN HIDAHIDLPPEISSILPLAVSVNEKHAKGAQQWQNTITGVGQRFSGVHEFRESLRKYA IAHQFAFRYKKNDSHRVTVKCKAEGCPWRIHASRLSTTQLICIKKMNPTHTCEGAVVT TGHQATRSWVASIIKEKLKVFPNYKPKDIVNDIKQEYGIQLNYFQAWRGKEIAKEQLQ GSYKEAYSQLPYFCERIMETNPGSFATFTTKEDSSFHRLFISFHASLCGFVQGCRPLL FLDSIPLKSKYQGTLLAATAADGDDSVFPVAFSVVDAETDDNWHWFLLQLKSALSTSC PITFIADRQKGLRESISEIFKGSYHGYCLRYLTEQLIRDLKGQFSHEVKRLMIEDLYA AALAPRPEGFQRSIESIKSISLEAYNWIIQSEPQKWANSFFQGARYNHMTSNFGELFY SWASDAHELPITQMVDLIRGKIMELIYTRRADSDQWLTRLTPSMEEKLEKESLNVRPL QVLLTSGSIFEVRGESIEVVDMDRWDCSCKGWQLTGLPCCHAIAVISCIGRSPYDYCS RYFTTESYRLTYAETVQPIPDVDRALQKDSSQALVTVTPPPTRRPPGRPTTKKVGSQE VMKRQLQCSRCKGLGHNKSTCKELL" CDS complement(join(40241502..40243452,40243539..40243885)) /locus_tag="TCM_026838" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG021500t3" /codon_start=1 /product="MuDR family transposase isoform 2" /protein_id="EOY11764.1" /db_xref="Phytozome:POPTR_0013s00410.1" /db_xref="TAIR:AT1G64260.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5BJU6" /translation="MASKKIIAICQSGGEFETDKDGSLSYRGGDAHAIDIDDQMKFND FRMEVAEMFNCNIETMSIKYFLPGNKKTLITVSNDKDLQRMIKFHGDSVTADVYIIME EIVAPDVSNMPASRSSRTTLSEAVPPLDPPLDVVDNIVDDTTQLHLPIGASLDVVDTN HIDAHIDLPPEISSILPLAVSVNEKHAKGAQQWQNTITGVGQRFSGVHEFRESLRKYA IAHQFAFRYKKNDSHRVTVKCKAEGCPWRIHASRLSTTQLICIKKMNPTHTCEGAVVT TGHQATRSWVASIIKEKLKVFPNYKPKDIVNDIKQEYGIQLNYFQAWRGKEIAKEQLQ GSYKEAYSQLPYFCERIMETNPGSFATFTTKEDSSFHRLFISFHASLCGFVQGCRPLL FLDSIPLKSKYQGTLLAATAADGDDSVFPVAFSVVDAETDDNWHWFLLQLKSALSTSC PITFIADRQKGLRESISEIFKGSYHGYCLRYLTEQLIRDLKGQFSHEVKRLMIEDLYA AALAPRPEGFQRSIESIKSISLEAYNWIIQSEPQKWANSFFQGARYNHMTSNFGELFY SWASDAHELPITQMVDLIRGKIMELIYTRRADSDQWLTRLTPSMEEKLEKESLNVRPL QVLLTSGSIFEVRGESIEVVDMDRWDCSCKGWQLTGLPCCHAIAVISCIGRSPYDYCS RYFTTESYRLTYAETVQPIPDVDRALQKDSSQALVTVTPPPTRRPPGRPTTKKVGSQE VMKRQLQCSRCKGLGHNKSTCKELL" gene complement(40245181..40248650) /locus_tag="TCM_026839" /note="dbxref CacaoGD:Thecc1EG026839" mRNA complement(join(40245181..40245696,40246697..40248650)) /locus_tag="TCM_026839" /product="Pyridoxal phosphate-dependent transferases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s00480.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004942t2" /inference="similar to AA sequence:Phytozome:Glyma03g38740.2" /note="transcript variant 6; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc956t1; alternateUTRof:Thecc1EG026839t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc956t6" mRNA complement(join(40245181..40245705,40246697..40248650)) /locus_tag="TCM_026839" /product="Pyridoxal phosphate-dependent transferases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s00480.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004942t2" /inference="similar to AA sequence:Phytozome:Glyma03g38740.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc956t6; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc956t6" mRNA complement(join(40245181..40245705,40246442..40246531, 40246697..40248650)) /locus_tag="TCM_026839" /product="Pyridoxal phosphate-dependent transferases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s00480.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004942t2" /inference="similar to AA sequence:Phytozome:Glyma03g38740.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:PASA:2:TSA:puevd3b025963t1a2; alternateUTRof:Thecc1EG026839t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc956t6" mRNA complement(join(40245181..40245705,40246442..40248650)) /locus_tag="TCM_026839" /product="Pyridoxal phosphate-dependent transferases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s00480.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004942t2" /inference="similar to AA sequence:Phytozome:Glyma03g38740.2" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc956t3; alternateUTRof:Thecc1EG026839t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc956t6" mRNA complement(join(40245678..40246531,40246697..40248650)) /locus_tag="TCM_026839" /product="Pyridoxal phosphate-dependent transferases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s00480.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004942t2" /inference="similar to AA sequence:Phytozome:Glyma03g38740.2" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 0.76 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc957t2; alternateUTRof:Thecc1EG026839t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc956t6" mRNA complement(join(40245696..40245723,40246697..40248650)) /locus_tag="TCM_026839" /product="Pyridoxal phosphate-dependent transferases superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s00480.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004942t2" /inference="similar to AA sequence:Phytozome:Glyma03g38740.2" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc957t1; alternateUTRof:Thecc1EG026839t1; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc956t6" CDS complement(40246701..40248329) /locus_tag="TCM_026839" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG004942t2" /codon_start=1 /product="Pyridoxal phosphate-dependent transferases superfamily protein isoform 1" /protein_id="EOY11765.1" /db_xref="Phytozome:Glyma03g38740.2" /db_xref="TAIR:AT5G26600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M1R1" /translation="MSGRVVASGLRAVVVGIANHSSFIRHQIKAFSAVRYCGTHLTKK LLLYNFLHMSLNHSFSHSSCLLSSSSILSPFLISMASSLHTQTQTNTNGTNGDSASDP KSHLCKKPRLQSHAPVLSQPFITPSDILSEFSHHDPSVARINNGSFGCCPSSVLSAQR QLQLQWLQQPDNFYFNQLQSRFLESRNIIKEIINADHVDEVSVVDNATTAVAIVLQQM AWGFAEGRFHPGDAAVMLHYAYGAVKKSIEAYVTRAGGYVIEVPLPFPVDSVDEIVQE FRKALERGKQNGRRVRLAVIDHVTSMPSVVIPVKELVKICREEGVDQVFVDAAHGIGC VDVDVKEIEADFYTSNLHKWFFCPPSVAFLYCRRSTKSSDLHHPVVSHEYGNGLAIES AWIGTRDYSAQLVVAKVLEFINRFEGGIHGIKKRNHEAVVEMGEMLVKAWGTHLGCLP EMCSSMVMVGLPACLGISSDQDTLKLRTYLRDKFRVEVPIYYRAPKDGEVGPVTGYAR ISYQVYNKVDDYYKFRDAIKQLVDNGFTCASLPN" CDS complement(40246701..40248329) /locus_tag="TCM_026839" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG004942t2" /codon_start=1 /product="Pyridoxal phosphate-dependent transferases superfamily protein isoform 1" /protein_id="EOY11766.1" /db_xref="Phytozome:Glyma03g38740.2" /db_xref="TAIR:AT5G26600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M1R1" /translation="MSGRVVASGLRAVVVGIANHSSFIRHQIKAFSAVRYCGTHLTKK LLLYNFLHMSLNHSFSHSSCLLSSSSILSPFLISMASSLHTQTQTNTNGTNGDSASDP KSHLCKKPRLQSHAPVLSQPFITPSDILSEFSHHDPSVARINNGSFGCCPSSVLSAQR QLQLQWLQQPDNFYFNQLQSRFLESRNIIKEIINADHVDEVSVVDNATTAVAIVLQQM AWGFAEGRFHPGDAAVMLHYAYGAVKKSIEAYVTRAGGYVIEVPLPFPVDSVDEIVQE FRKALERGKQNGRRVRLAVIDHVTSMPSVVIPVKELVKICREEGVDQVFVDAAHGIGC VDVDVKEIEADFYTSNLHKWFFCPPSVAFLYCRRSTKSSDLHHPVVSHEYGNGLAIES AWIGTRDYSAQLVVAKVLEFINRFEGGIHGIKKRNHEAVVEMGEMLVKAWGTHLGCLP EMCSSMVMVGLPACLGISSDQDTLKLRTYLRDKFRVEVPIYYRAPKDGEVGPVTGYAR ISYQVYNKVDDYYKFRDAIKQLVDNGFTCASLPN" CDS complement(40246701..40248329) /locus_tag="TCM_026839" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG004942t2" /codon_start=1 /product="Pyridoxal phosphate-dependent transferases superfamily protein isoform 1" /protein_id="EOY11767.1" /db_xref="Phytozome:Glyma03g38740.2" /db_xref="TAIR:AT5G26600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M1R1" /translation="MSGRVVASGLRAVVVGIANHSSFIRHQIKAFSAVRYCGTHLTKK LLLYNFLHMSLNHSFSHSSCLLSSSSILSPFLISMASSLHTQTQTNTNGTNGDSASDP KSHLCKKPRLQSHAPVLSQPFITPSDILSEFSHHDPSVARINNGSFGCCPSSVLSAQR QLQLQWLQQPDNFYFNQLQSRFLESRNIIKEIINADHVDEVSVVDNATTAVAIVLQQM AWGFAEGRFHPGDAAVMLHYAYGAVKKSIEAYVTRAGGYVIEVPLPFPVDSVDEIVQE FRKALERGKQNGRRVRLAVIDHVTSMPSVVIPVKELVKICREEGVDQVFVDAAHGIGC VDVDVKEIEADFYTSNLHKWFFCPPSVAFLYCRRSTKSSDLHHPVVSHEYGNGLAIES AWIGTRDYSAQLVVAKVLEFINRFEGGIHGIKKRNHEAVVEMGEMLVKAWGTHLGCLP EMCSSMVMVGLPACLGISSDQDTLKLRTYLRDKFRVEVPIYYRAPKDGEVGPVTGYAR ISYQVYNKVDDYYKFRDAIKQLVDNGFTCASLPN" CDS complement(40246701..40248329) /locus_tag="TCM_026839" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG004942t2" /codon_start=1 /product="Pyridoxal phosphate-dependent transferases superfamily protein isoform 1" /protein_id="EOY11768.1" /db_xref="Phytozome:Glyma03g38740.2" /db_xref="TAIR:AT5G26600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M1R1" /translation="MSGRVVASGLRAVVVGIANHSSFIRHQIKAFSAVRYCGTHLTKK LLLYNFLHMSLNHSFSHSSCLLSSSSILSPFLISMASSLHTQTQTNTNGTNGDSASDP KSHLCKKPRLQSHAPVLSQPFITPSDILSEFSHHDPSVARINNGSFGCCPSSVLSAQR QLQLQWLQQPDNFYFNQLQSRFLESRNIIKEIINADHVDEVSVVDNATTAVAIVLQQM AWGFAEGRFHPGDAAVMLHYAYGAVKKSIEAYVTRAGGYVIEVPLPFPVDSVDEIVQE FRKALERGKQNGRRVRLAVIDHVTSMPSVVIPVKELVKICREEGVDQVFVDAAHGIGC VDVDVKEIEADFYTSNLHKWFFCPPSVAFLYCRRSTKSSDLHHPVVSHEYGNGLAIES AWIGTRDYSAQLVVAKVLEFINRFEGGIHGIKKRNHEAVVEMGEMLVKAWGTHLGCLP EMCSSMVMVGLPACLGISSDQDTLKLRTYLRDKFRVEVPIYYRAPKDGEVGPVTGYAR ISYQVYNKVDDYYKFRDAIKQLVDNGFTCASLPN" CDS complement(40246701..40248329) /locus_tag="TCM_026839" /note="encoded by transcript variant 5; alternatively spliced; paralog of Thecc1EG004942t2" /codon_start=1 /product="Pyridoxal phosphate-dependent transferases superfamily protein isoform 1" /protein_id="EOY11769.1" /db_xref="Phytozome:Glyma03g38740.2" /db_xref="TAIR:AT5G26600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M1R1" /translation="MSGRVVASGLRAVVVGIANHSSFIRHQIKAFSAVRYCGTHLTKK LLLYNFLHMSLNHSFSHSSCLLSSSSILSPFLISMASSLHTQTQTNTNGTNGDSASDP KSHLCKKPRLQSHAPVLSQPFITPSDILSEFSHHDPSVARINNGSFGCCPSSVLSAQR QLQLQWLQQPDNFYFNQLQSRFLESRNIIKEIINADHVDEVSVVDNATTAVAIVLQQM AWGFAEGRFHPGDAAVMLHYAYGAVKKSIEAYVTRAGGYVIEVPLPFPVDSVDEIVQE FRKALERGKQNGRRVRLAVIDHVTSMPSVVIPVKELVKICREEGVDQVFVDAAHGIGC VDVDVKEIEADFYTSNLHKWFFCPPSVAFLYCRRSTKSSDLHHPVVSHEYGNGLAIES AWIGTRDYSAQLVVAKVLEFINRFEGGIHGIKKRNHEAVVEMGEMLVKAWGTHLGCLP EMCSSMVMVGLPACLGISSDQDTLKLRTYLRDKFRVEVPIYYRAPKDGEVGPVTGYAR ISYQVYNKVDDYYKFRDAIKQLVDNGFTCASLPN" CDS complement(40246701..40248329) /locus_tag="TCM_026839" /note="encoded by transcript variant 6; alternatively spliced; paralog of Thecc1EG004942t2" /codon_start=1 /product="Pyridoxal phosphate-dependent transferases superfamily protein isoform 1" /protein_id="EOY11770.1" /db_xref="Phytozome:Glyma03g38740.2" /db_xref="TAIR:AT5G26600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q9M1R1" /translation="MSGRVVASGLRAVVVGIANHSSFIRHQIKAFSAVRYCGTHLTKK LLLYNFLHMSLNHSFSHSSCLLSSSSILSPFLISMASSLHTQTQTNTNGTNGDSASDP KSHLCKKPRLQSHAPVLSQPFITPSDILSEFSHHDPSVARINNGSFGCCPSSVLSAQR QLQLQWLQQPDNFYFNQLQSRFLESRNIIKEIINADHVDEVSVVDNATTAVAIVLQQM AWGFAEGRFHPGDAAVMLHYAYGAVKKSIEAYVTRAGGYVIEVPLPFPVDSVDEIVQE FRKALERGKQNGRRVRLAVIDHVTSMPSVVIPVKELVKICREEGVDQVFVDAAHGIGC VDVDVKEIEADFYTSNLHKWFFCPPSVAFLYCRRSTKSSDLHHPVVSHEYGNGLAIES AWIGTRDYSAQLVVAKVLEFINRFEGGIHGIKKRNHEAVVEMGEMLVKAWGTHLGCLP EMCSSMVMVGLPACLGISSDQDTLKLRTYLRDKFRVEVPIYYRAPKDGEVGPVTGYAR ISYQVYNKVDDYYKFRDAIKQLVDNGFTCASLPN" gene 40249558..40253826 /locus_tag="TCM_026840" /note="dbxref CacaoGD:Thecc1EG026840" mRNA join(40249558..40250032,40250821..40251164, 40251246..40251306,40251425..40251519,40251625..40251737, 40251813..40251981,40252080..40252119,40252197..40252261, 40252400..40252513,40252595..40252659,40252878..40253034, 40253133..40253252,40253342..40253430,40253522..40253826) /locus_tag="TCM_026840" /product="Aspartic proteinase" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s00380.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG030837t1" /inference="similar to AA sequence:Phytozome:POPTR_0013s00380.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12414t3" CDS join(40250835..40251164,40251246..40251306, 40251425..40251519,40251625..40251737,40251813..40251981, 40252080..40252119,40252197..40252261,40252400..40252513, 40252595..40252659,40252878..40253034,40253133..40253252, 40253342..40253430,40253522..40253606) /locus_tag="TCM_026840" /note="paralog of Thecc1EG030837t1" /codon_start=1 /product="Aspartic proteinase" /protein_id="EOY11771.1" /db_xref="Phytozome:POPTR_0013s00380.1" /db_xref="TAIR:AT1G11910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_P42211" /translation="MGHKLLQMTFCLWAITCLLLPSPSVGLSRITLKKQRLDLQGIKA ARIAMHGEDMLHNFGSSDGEVMPLKNYLDAQYYGVIGIGSPPQNFTVIFDTGSSNLWV PSSKCYFSIACYFHSKYKSSRSSTYTKIGKSCEINYGSGSISGFLSQDNVKVGGLVVK DQVFIEATREGSLTFALAKFDGILGLGFQEISVGNATPVWYNMLNQDLVREDVFSFWL NRDPLAQVGGEIVFGGVDPKHYKGKHTYVPVSRKGYWQFDMGDFLIGNHSTGVCETGC AAIVDSGTSLLAGPTTVVAEINQAIGARGVVSAECKEVVSQYGDLIWQLLVSGVLPDK VCTQIGLCPLKGVQSMSTGIETVVDKKNMEGLSAGDKVLCTACEMTVIWIQSQLRQKE TKDRVLNYVNELCESLPSPMGESAIDCAKISEMPHITFTIGDKPFKLTPEQYVLKTGE DITTVCLSGFTALDVPPPRGPLWILGDVFMGVYHTVFDYGNLEIGFAEAA" gene complement(40253830..40257404) /locus_tag="TCM_026841" /note="dbxref CacaoGD:Thecc1EG026841" mRNA complement(join(40253830..40254070,40254334..40254481, 40254626..40254729,40254861..40255004,40255251..40255405, 40255787..40255982,40256272..40256353,40257158..40257404)) /locus_tag="TCM_026841" /product="D111/G-patch domain-containing protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s00370.1" /inference="similar to AA sequence:Phytozome:GSVIVT01031331001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaB_g09770t00001" CDS complement(join(40253993..40254070,40254334..40254481, 40254626..40254729,40254861..40255004,40255251..40255405, 40255787..40255982,40256272..40256343)) /locus_tag="TCM_026841" /codon_start=1 /product="D111/G-patch domain-containing protein" /protein_id="EOY11772.1" /db_xref="Phytozome:GSVIVT01031331001" /db_xref="TAIR:AT5G26610.3" /db_xref="UniProtKB/TrEMBL:UniRef50_F6I4I1" /translation="MDYRRYNSAQETNIRDKQQQQDDLAYQDSLIEDLAEDFRLPINH KPTENVDLENVEQATLDTRLNSSNIGFRLLQKMGWKGKGLGKDEQGITEPIRSGIRDP KLGIGKQEEDDFFTAEENIQRRKLDIEVEETEEHAKKREVLAEREQKIQTEVKEIRKV FYCELCNKQYKLAMEFEVHLSSYDHNHRKRFKEMREMHGGSSRDDRQKREQQRQEKEM AKFAQMAGARKQQQELPEESGPAIASAPVTATALADQDQRKALKFGFSSKTSTSKNAF GNAAKKPKFPVASVFGNDSDDE" gene complement(40257441..40267663) /locus_tag="TCM_026842" /note="dbxref CacaoGD:Thecc1EG026842" mRNA complement(join(40257441..40257564,40264750..40265732, 40267499..40267663)) /locus_tag="TCM_026842" /product="Agamous-like MADS-box protein A" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031333001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG042799t1" /inference="similar to AA sequence:Phytozome:GSVIVT01031333001" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.75 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g15334t00001_G2" gene 40259268..40259697 /locus_tag="TCM_026843" /note="dbxref CacaoGD:Thecc1EG026843" mRNA 40259268..40259697 /locus_tag="TCM_026843" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is paralog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.98 coverage" CDS 40259347..40259610 /locus_tag="TCM_026843" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11774.1" /translation="MGGNKQKKSFSFFGFFKGKKGRTRLDQDHYTYSGGEDVWSTRKV YPSDEDSTHRVVAEPGIDKKASDFIANFRASLVSEAVHPQHAV" CDS complement(join(40265007..40265732,40267499..40267594)) /locus_tag="TCM_026842" /note="paralog of Thecc1EG042799t1" /codon_start=1 /product="Agamous-like MADS-box protein A" /protein_id="EOY11773.1" /db_xref="Phytozome:GSVIVT01031333001" /db_xref="TAIR:AT5G48670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7UAA8" /translation="MDGGACVTTRDFSPKQTVGCACTNNPLAAHVYVAMTRKKVKLAY ITNDSARKATFKKRKKGLLKKVNELSTLCGIEACAIIYSPYDAQPEVWPSPAGAQRVL SDFKKMPEMEQSKKMVSQESFLRQRIAKANEQLKRQCRDNREKEITQVMFQCLVGKGL QNLNMMDLNDLGWLLEQNLKDIDKRIDTLNKASHSRGSATASSGTTMATLDARLKNGE KVQAESSDREVSMETAQRQQWIKDLMHPPEHVGLGSVLPFGDNNPTALWSNAFFP" mobile_element 40266628..40266682 /note="source:scaffold_10_CACTA_0140 6840 7307" /mobile_element_type="transposon:TIR/CACTA" mobile_element 40266683..40267100 /note="source:INTACT135F_F90_scaffold_2-int 13531 13998" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 40268068..40268264 /note="source:scaffold_8_CACTA_0863 355 553" /mobile_element_type="transposon:TIR/CACTA" mobile_element 40271205..40271680 /note="source:INTACT135F_F90_scaffold_2-int 13457 13998" /mobile_element_type="retrotransposon:LTR/Copia" gene complement(40281262..40281976) /locus_tag="TCM_026845" /note="dbxref CacaoGD:Thecc1EG026845" mRNA complement(40281262..40281976) /locus_tag="TCM_026845" /product="Agamous-like MADS-box protein A" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s01880.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG026842t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s00420.1" /note="quality class is strong, express is medium, homology is paralog strong, intron is none, protein is complete; similar to RNA sequence, EST 0.53 coverage; inference alignment:Newbler:10:TSA:cgbaP1_g15334t00001_G2" CDS complement(40281307..40281930) /locus_tag="TCM_026845" /note="paralog of Thecc1EG026842t1" /codon_start=1 /product="Agamous-like MADS-box protein A" /protein_id="EOY11775.1" /db_xref="Phytozome:POPTR_0005s00420.1" /db_xref="TAIR:AT5G48670.1" /db_xref="UniProtKB/TrEMBL:UniRef50_D7UAA8" /translation="MTRKKVQLAYIINDSARKAAFRKRTKGLLKKASELSTLCGIEAC VIIYSPYNAQPEVWPSSAGAQRVLSEFKKMPKMDQSQKMMSQENFLRQRIAKANQQLK RQCRDNREKEITQVMFQCLAEQGLENLNMMDLNDLEWLLEQNLKDIDKRIDMLTKASH SQGFATTSSTTIAMPEVMLKNGEKVQAESPNREVSLETVQRQQLIRT" mobile_element 40282955..40283012 /note="source:INTACT159_F2_scaffold_6-int 5291 5346" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 40284244..40286978 /note="source:CACAO_on_SS_E42_scaffold_2 19410 22106" /mobile_element_type="transposon:TIR/Mutator" gene complement(40288458..40289553) /locus_tag="TCM_026847" /note="dbxref CacaoGD:Thecc1EG026847" mRNA complement(join(40288458..40288531,40289095..40289202, 40289316..40289553)) /locus_tag="TCM_026847" /product="Stress-induced hydrophobic peptide" /inference="alignment:exonerate- protein:2:Phytozome:Glyma20g22290.1" /inference="similar to AA sequence:Phytozome:Glyma20g22290.1" /note="quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:11:TSA:cacao11r39cuf2_Gsc5g15333t1" CDS complement(join(40289116..40289202,40289316..40289405)) /locus_tag="TCM_026847" /codon_start=1 /product="Stress-induced hydrophobic peptide" /protein_id="EOY11776.1" /db_xref="Phytozome:Glyma20g22290.1" /translation="MADDSTATCVDILLAIILPPLGVFLKYGCEVEFWICLVLTLFGY IPGIIYAVYAITKK" mobile_element complement(40290323..40290400) /note="source:scaffold_5_CACTA_0606 7239 7315" /mobile_element_type="transposon:TIR/CACTA" gene 40290911..40293980 /locus_tag="TCM_026848" /note="dbxref CacaoGD:Thecc1EG026848" mRNA 40290911..40293980 /locus_tag="TCM_026848" /product="Tetratricopeptide repeat superfamily protein" /inference="alignment:exonerate- protein:2:Phytozome:Glyma03g38690.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG005409t1" /inference="similar to AA sequence:Phytozome:Glyma03g38690.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is none, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12420t1" CDS 40291271..40293397 /locus_tag="TCM_026848" /note="paralog of Thecc1EG005409t1" /codon_start=1 /product="Tetratricopeptide repeat superfamily protein" /protein_id="EOY11777.1" /db_xref="Phytozome:Glyma03g38690.1" /db_xref="TAIR:AT3G23330.1" /db_xref="UniProtKB/TrEMBL:UniRef50_A5AZT2" /translation="MRPMPFLQKCQTGGTAAPSLLTSKLFPSHTVTHLNNLLNTTART KSLRHAAQIHSQFVTNSFLSVPFLFNNLLSLYAKSGHISHSLLLFSTAHRVPKGVVSW TTLISHLSRFNTPFEALTLFNHMRSNGVYPNHYTFSAVLPACASTTILLHGQQMHCLI SKHGYDTDVFVGSALADMYTKCHNMGLAEKVFVALPERNLVSWNSMIVGCLLNSLHDK ALLLFREVIREDFVSPDQVSFSSVLSASANMGALEFGKQIHGMIVKHGLLALSYVKNS LMDMYFKCSLFDEGALLFNTVGARDVITWNVMSMGCVYNENFEEACNYFWVMRRAGIS PDEASCSTALHASAHLAALGQGTLIHNQIIKTGFSKNTCIASSLITMYAKCGSLDDAR RVFEEIKNRNVVCWTAMIAACQQHGNGNQVIDLFEKMLADGLKPDYITFVCVLSACSH TGRVEEGYAYFNSMEKVHGISPGHEHYACMVDLLGRAGQLDEAKKFIAQMRIKPDSSV WGALLGGCANYGNLELGIEVAGRLFELEPNNPGNYVLLSNMYAHKGKLREADQVRRLM GINRVRKEPGCSWIDVKNKTFVFTVHDKSHSRMDEIYEMLKKVEELVKDKGYVPQKQY AVNSADEDKEQSLWYHSEKIAFAFGLLALPAGAPIRIKKNLRTCGDCHMVMKFASEVF KREIILRDINRFHHFRNGLCSCSDYW" gene complement(40293850..40295174) /locus_tag="TCM_026849" /note="dbxref CacaoGD:Thecc1EG026849" mRNA complement(join(40293850..40294298,40294473..40295174)) /locus_tag="TCM_026849" /product="Uncharacterized protein" /note="quality class is medium-utrpoor, express is strong, homology is none, intron is medium, protein is utrpoor_complete; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc2922t1_C2" CDS complement(40294520..40294741) /locus_tag="TCM_026849" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11778.1" /translation="MRGGRLVDVKVERAWRWSSDFGKLMGWVEGEDKHWKDFFNVSVK RNKERKRCLSSLLHPSHPFPTFPPSPQVL" gene complement(40295542..40298543) /locus_tag="TCM_026850" /note="dbxref CacaoGD:Thecc1EG026850" mRNA complement(join(40295542..40296553,40297555..40297725, 40298277..40298543)) /locus_tag="TCM_026850" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is weak, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.20 coverage" CDS complement(join(40296404..40296553,40297555..40297725, 40298277..40298333)) /locus_tag="TCM_026850" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11779.1" /translation="MVTFQRDHRSFQFRLPLIKDAGGPQWPGKENGAMSTWTLADPVR DTALSKWTPSFLGHLSPLALSASQPQVHAQLQPTVTGSLPPCNLAHDQTNDLTIATCT DIFRRCESYIGLARRASRCIEPR" gene 40298915..40304574 /locus_tag="TCM_026851" /note="dbxref CacaoGD:Thecc1EG026851" mRNA join(40298915..40300147,40300275..40301505, 40301607..40301711,40301819..40301884,40302192..40302257, 40302372..40302869,40303400..40303523,40303612..40303955) /locus_tag="TCM_026851" /product="Phytochrome interacting factor 3, putative isoform 2" /inference="alignment:exonerate-protein:2:frave:gene22963" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s00360.1" /inference="similar to AA sequence:Phytozome:POPTR_0005s00360.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.96 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1011t6; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12465t4" mRNA join(40298915..40300147,40300275..40301505, 40301607..40301711,40301819..40301884,40302252..40302257, 40302372..40302872,40303402..40303523,40303612..40303955) /locus_tag="TCM_026851" /product="Phytochrome interacting factor 3, putative isoform 3" /inference="alignment:exonerate-protein:2:frave:gene22963" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s00360.1" /inference="similar to AA sequence:Phytozome:POPTR_0005s00360.1" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.97 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1011t5; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12465t4" mRNA join(40299868..40300147,40300275..40301505, 40301607..40301711,40301819..40301884,40302192..40302257, 40302372..40302872,40303402..40303523,40303612..40304574) /locus_tag="TCM_026851" /product="Phytochrome interacting factor 3, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s00360.1" /inference="similar to AA sequence:Phytozome:POPTR_0005s00360.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.81 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12465t4" mRNA join(40299895..40300147,40300275..40301505, 40301607..40301711,40301819..40301884,40302189..40302257, 40302372..40302872,40303402..40303523,40303612..40303947) /locus_tag="TCM_026851" /product="Phytochrome interacting factor 3, putative isoform 4" /inference="alignment:exonerate-protein:2:frave:gene22963" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s00360.1" /inference="similar to AA sequence:Phytozome:POPTR_0005s00360.1" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12465t2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12465t4" CDS join(40300056..40300147,40300275..40301505, 40301607..40301711,40301819..40301884,40302192..40302257, 40302372..40302869,40303400..40303523,40303612..40303625) /locus_tag="TCM_026851" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="Phytochrome interacting factor 3, putative isoform 2" /protein_id="EOY11781.1" /db_xref="Phytozome:POPTR_0005s00360.1" /db_xref="TAIR:AT1G09530.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N407" /translation="MPLSELYRMARGKLDSSQDKNPSCSTDLSFVPENDFVELVLENG QILMQGQSSKARRIPACNSLPSHCLPSHTPKTRDKDTGNGGTNTKMGKFGTIDSVLSE IPMSVPSAEMSLNQDDEVVPWLNYPVDQSLQSEYSDFLPELSGVAVNETSTHSNFASF DRRSQSIRDSCTVSLNNGAVFEQGNPSKVPTPADGEARPRSGTSQLSTLPSQLCQTSS PFLRSRILENIGNSLGHTSTHHAIGGDSIGVQASDGGLPGIKMQKQDQVAPCNNTVLM NFSHFSRPAALVKASLQNISAIASIERIGSKEKGSAASISDPADTTFIDSSIDLQKEK FSQCQPTIVLMKTDRKESKAKSLDEPVTAEPIDAICEENTPKNVKNPSQVTGESASKG LPDGDKTVEPVLAASSVCSGNSVERASDDPVYNLKRKSRDNEESECPSEDAEEESVGV KKAVPARGGSGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEA IEYLKTLQLQVQIMSMGAGLYMPPMMLPTGMQHMHAAHMAHFSPMGVGLGMGMGFGMP LPDMNAGSSARPMVQVPPIHGAPFSGPGPTALQGMAGSNLQLFGLPGQGLPMSMPHTP LIPISGGHLMKPAMGLSACGLVGPMDNMGSATASSSKDPVQNINSQVAQNTNVNSSMN QTPSSVQQQIKVLNSQLQCKRMVKHQKLLVVYLLDQPMEMKKYLIGHNW" CDS join(40300056..40300147,40300275..40301505, 40301607..40301711,40301819..40301884,40302189..40302257, 40302372..40302872,40303402..40303523,40303612..40303618) /locus_tag="TCM_026851" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="Phytochrome interacting factor 3, putative isoform 4" /protein_id="EOY11783.1" /db_xref="Phytozome:POPTR_0005s00360.1" /db_xref="TAIR:AT1G09530.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N407" /translation="MPLSELYRMARGKLDSSQDKNPSCSTDLSFVPENDFVELVLENG QILMQGQSSKARRIPACNSLPSHCLPSHTPKTRDKDTGNGGTNTKMGKFGTIDSVLSE IPMSVPSAEMSLNQDDEVVPWLNYPVDQSLQSEYSDFLPELSGVAVNETSTHSNFASF DRRSQSIRDSCTVSLNNGAVFEQGNPSKVPTPADGEARPRSGTSQLSTLPSQLCQTSS PFLRSRILENIGNSLGHTSTHHAIGGDSIGVQASDGGLPGIKMQKQDQVAPCNNTVLM NFSHFSRPAALVKASLQNISAIASIERIGSKEKGSAASISDPADTTFIDSSIDLQKEK FSQCQPTIVLMKTDRKESKAKSLDEPVTAEPIDAICEENTPKNVKNPSQVTGESASKG LPDGDKTVEPVLAASSVCSGNSVERASDDPVYNLKRKSRDNEESECPSEDAEEESVGV KKAVPARGGSGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKKVDKASMLDE AIEYLKTLQLQVQIMSMGAGLYMPPMMLPTGMQHMHAAHMAHFSPMGVGLGMGMGFGM PLPDMNAGSSARPMVQVPPIHGAPFSGPGPTALQGMAGSNLQLFGLPGQGLPMSMPHT PLIPISGGHLMKPAMGLSACGLVGPMDNMGSATASSSKDPVQNINSQVAQNTNVNSSM NQTPSQCPTTNQSFEQPAAVQENGQASEITGSVPFRSADGNEKVPDRS" CDS join(40300056..40300147,40300275..40301505, 40301607..40301711,40301819..40301884,40302192..40302257, 40302372..40302872,40303402..40303523,40303612..40303618) /locus_tag="TCM_026851" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="Phytochrome interacting factor 3, putative isoform 1" /protein_id="EOY11780.1" /db_xref="Phytozome:POPTR_0005s00360.1" /db_xref="TAIR:AT1G09530.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N407" /translation="MPLSELYRMARGKLDSSQDKNPSCSTDLSFVPENDFVELVLENG QILMQGQSSKARRIPACNSLPSHCLPSHTPKTRDKDTGNGGTNTKMGKFGTIDSVLSE IPMSVPSAEMSLNQDDEVVPWLNYPVDQSLQSEYSDFLPELSGVAVNETSTHSNFASF DRRSQSIRDSCTVSLNNGAVFEQGNPSKVPTPADGEARPRSGTSQLSTLPSQLCQTSS PFLRSRILENIGNSLGHTSTHHAIGGDSIGVQASDGGLPGIKMQKQDQVAPCNNTVLM NFSHFSRPAALVKASLQNISAIASIERIGSKEKGSAASISDPADTTFIDSSIDLQKEK FSQCQPTIVLMKTDRKESKAKSLDEPVTAEPIDAICEENTPKNVKNPSQVTGESASKG LPDGDKTVEPVLAASSVCSGNSVERASDDPVYNLKRKSRDNEESECPSEDAEEESVGV KKAVPARGGSGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEA IEYLKTLQLQVQIMSMGAGLYMPPMMLPTGMQHMHAAHMAHFSPMGVGLGMGMGFGMP LPDMNAGSSARPMVQVPPIHGAPFSGPGPTALQGMAGSNLQLFGLPGQGLPMSMPHTP LIPISGGHLMKPAMGLSACGLVGPMDNMGSATASSSKDPVQNINSQVAQNTNVNSSMN QTPSQCPTTNQSFEQPAAVQENGQASEITGSVPFRSADGNEKVPDRS" CDS join(40300056..40300147,40300275..40301505, 40301607..40301711,40301819..40301884,40302252..40302257, 40302372..40302872,40303402..40303523,40303612..40303618) /locus_tag="TCM_026851" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="Phytochrome interacting factor 3, putative isoform 3" /protein_id="EOY11782.1" /db_xref="Phytozome:POPTR_0005s00360.1" /db_xref="TAIR:AT1G09530.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N407" /translation="MPLSELYRMARGKLDSSQDKNPSCSTDLSFVPENDFVELVLENG QILMQGQSSKARRIPACNSLPSHCLPSHTPKTRDKDTGNGGTNTKMGKFGTIDSVLSE IPMSVPSAEMSLNQDDEVVPWLNYPVDQSLQSEYSDFLPELSGVAVNETSTHSNFASF DRRSQSIRDSCTVSLNNGAVFEQGNPSKVPTPADGEARPRSGTSQLSTLPSQLCQTSS PFLRSRILENIGNSLGHTSTHHAIGGDSIGVQASDGGLPGIKMQKQDQVAPCNNTVLM NFSHFSRPAALVKASLQNISAIASIERIGSKEKGSAASISDPADTTFIDSSIDLQKEK FSQCQPTIVLMKTDRKESKAKSLDEPVTAEPIDAICEENTPKNVKNPSQVTGESASKG LPDGDKTVEPVLAASSVCSGNSVERASDDPVYNLKRKSRDNEESECPSEDAEEESVGV KKAVPARGGSGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVQIMSMGAGL YMPPMMLPTGMQHMHAAHMAHFSPMGVGLGMGMGFGMPLPDMNAGSSARPMVQVPPIH GAPFSGPGPTALQGMAGSNLQLFGLPGQGLPMSMPHTPLIPISGGHLMKPAMGLSACG LVGPMDNMGSATASSSKDPVQNINSQVAQNTNVNSSMNQTPSQCPTTNQSFEQPAAVQ ENGQASEITGSVPFRSADGNEKVPDRS" mobile_element 40303959..40304008 /note="source:CACAO_PIF_E144_scaffold_10 6002 6051" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 40309119..40311083 /locus_tag="TCM_026852" /note="dbxref CacaoGD:Thecc1EG026852" mRNA join(40309119..40309489,40309558..40309620, 40310113..40311083) /locus_tag="TCM_026852" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is medium, homology is none, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.54 coverage" CDS 40310127..40310396 /locus_tag="TCM_026852" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11784.1" /translation="MLTQSNRGQLHYCDWCIYITKVHQFTSFYHLFGYCPAWRWNQHT KIQKTGDGHFRLIIWGLVEFECFFKGEGICPLIFKVVENTLVLNL" gene 40311200..40314292 /locus_tag="TCM_026853" /note="dbxref CacaoGD:Thecc1EG026853" mRNA join(40311200..40311535,40311649..40311778, 40311909..40313074,40313147..40313273,40314120..40314292) /locus_tag="TCM_026853" /product="Myb domain protein 61, putative isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s00290.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004965t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s00340.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12433t2" mRNA join(40311282..40311535,40311646..40311778, 40311909..40313413) /locus_tag="TCM_026853" /product="Myb domain protein 61, putative isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s00290.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004965t1" /inference="similar to AA sequence:Phytozome:POPTR_0005s00340.1" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is weak, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12433t1; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12433t2" CDS join(40311403..40311535,40311646..40311778, 40311909..40312971) /locus_tag="TCM_026853" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG004965t1" /codon_start=1 /product="Myb domain protein 61, putative isoform 2" /protein_id="EOY11786.1" /db_xref="Phytozome:POPTR_0005s00340.1" /db_xref="TAIR:AT1G09540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I6B7" /translation="MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLA AGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENLIIELHAVLGNRWSQIAAQLPGRTD NEIKNLWNSCIKKKLRRTGIDPNTHKPLSEVENDNKEKLPTSNKASAGSNELNLGEVM DSKSPSTVMEKYPLEVSSHSKMNNSGNCRNNNVNVTSTPHTQEFLLDRFATTHESNTT TSCRPSDLVSYFPFQKLDYAPNIGLSVSQSTSLCFNSSSSSSEVISEFNSSLRQTVLP TMSSSIFQTPIRVKPSVSLPCDNPSCDVNGVQNWEGSSYSNNASSSNGSSGSVELQSN SILFESNLFSWGLADCGKSGEGVPIRSLEGDPDDIKWSEYLNSPFLLGTPMLNQTSQA MYNEVKPQAQLITDGSSNTWPQNQHQQASRVSDMYAKDFQRLAVAFGQTL" CDS join(40311403..40311535,40311649..40311778, 40311909..40312971) /locus_tag="TCM_026853" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG004965t1" /codon_start=1 /product="Myb domain protein 61, putative isoform 1" /protein_id="EOY11785.1" /db_xref="Phytozome:POPTR_0005s00340.1" /db_xref="TAIR:AT1G09540.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9I6B7" /translation="MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLA GLQRCGKSCRLRWINYLRPDLKRGAFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDN EIKNLWNSCIKKKLRRTGIDPNTHKPLSEVENDNKEKLPTSNKASAGSNELNLGEVMD SKSPSTVMEKYPLEVSSHSKMNNSGNCRNNNVNVTSTPHTQEFLLDRFATTHESNTTT SCRPSDLVSYFPFQKLDYAPNIGLSVSQSTSLCFNSSSSSSEVISEFNSSLRQTVLPT MSSSIFQTPIRVKPSVSLPCDNPSCDVNGVQNWEGSSYSNNASSSNGSSGSVELQSNS ILFESNLFSWGLADCGKSGEGVPIRSLEGDPDDIKWSEYLNSPFLLGTPMLNQTSQAM YNEVKPQAQLITDGSSNTWPQNQHQQASRVSDMYAKDFQRLAVAFGQTL" mobile_element complement(40314303..40314379) /note="source:CACAO_PIF_E54_scaffold_3 949 1018" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(40315307..40320864) /locus_tag="TCM_026854" /note="dbxref CacaoGD:Thecc1EG026854" mRNA complement(join(40315307..40315907,40316267..40316412, 40316520..40316625,40316766..40316843,40316976..40317029, 40317276..40317336,40317440..40317564,40317770..40317856, 40318303..40318376,40318479..40318608,40318925..40319007, 40319750..40319990,40320690..40320864)) /locus_tag="TCM_026854" /product="Pectinacetylesterase family protein" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031342001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004967t1" /inference="similar to AA sequence:Phytozome:Glyma19g41240.1" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.95 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12475t4" CDS complement(join(40315800..40315907,40316267..40316412, 40316520..40316625,40316766..40316843,40316976..40317029, 40317276..40317336,40317440..40317564,40317770..40317856, 40318303..40318376,40318479..40318608,40318925..40319007, 40319750..40319990,40320690..40320716)) /locus_tag="TCM_026854" /note="paralog of Thecc1EG004967t1" /codon_start=1 /product="Pectinacetylesterase family protein" /protein_id="EOY11787.1" /db_xref="Phytozome:Glyma19g41240.1" /db_xref="TAIR:AT3G05910.1" /db_xref="UniProtKB/TrEMBL:UniRef50_F4I839" /translation="MRSIKLQFLIQALAFSLSRFGEQRKAKMKLFCVGVFAAFVFCKV VAGFLDFNETELSFIEAYEYGVSKLNYNPLMVGLTLIPSAGAQGAVCLDGTLPGYHWH RGYGSGANSWLIQLEGGGWCNNIRTCVYRKKTRRGSSTYMEKQIPFTGILSEKAEENP DFFNWNRVKLRYCDGASFTGDSENKAAQLQFRGQRIWLAAMEDLMSKGMRYAKQALLS GCSAGGLAAILHCDEFRNLFPRTTKVKCLSDAGLFLDAIDVSGGHTLRSLYSGVVGLQ GVQHNLPRICTNHLDPTSCFFPQNLISHIQTPLFILNAAYDSWQIQSSIAPPSADPHG YWHDCRLNHAKCSASQIRFLQGFRTQMLNAIKGFSMSRQNGLFINSCFAHCQTERQDT WFADDSPEIRNKPIAIAVGDWYFDRAGVRSIDCPYPCDKTCHNLVFR" gene complement(40322492..40325894) /locus_tag="TCM_026855" /note="dbxref CacaoGD:Thecc1EG026855" mRNA complement(join(40322492..40324112,40324203..40324327, 40324438..40324866,40324998..40325215,40325363..40325432, 40325497..40325894)) /locus_tag="TCM_026855" /product="Major facilitator superfamily protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031343001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040996t1" /inference="similar to AA sequence:Phytozome:GSVIVT01031343001" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.70 coverage; inference alignment:Newbler:10:TSA:cgbaB_g06640t00001" mRNA complement(join(40322942..40324112,40324203..40324327, 40324438..40324865,40325363..40325432,40325497..40325702)) /locus_tag="TCM_026855" /product="Major facilitator superfamily protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031343001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040996t1" /inference="similar to AA sequence:Phytozome:GSVIVT01031343001" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.91 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc3186t3; inference alignment:Newbler:10:TSA:cgbaB_g06640t00001" mRNA complement(join(40322942..40324112,40324203..40324327, 40324438..40324750,40325187..40325432,40325497..40325702)) /locus_tag="TCM_026855" /product="Major facilitator superfamily protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031343001.2" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG040996t1" /inference="similar to AA sequence:Phytozome:GSVIVT01031343001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc2343t2; inference alignment:Newbler:10:TSA:cgbaB_g06640t00001" CDS complement(join(40323182..40324112,40324203..40324327, 40324438..40324865,40325363..40325432,40325497..40325613)) /locus_tag="TCM_026855" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG040996t1" /codon_start=1 /product="Major facilitator superfamily protein isoform 3" /protein_id="EOY11790.1" /db_xref="Phytozome:GSVIVT01031343001" /db_xref="TAIR:AT1G27040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N403" /translation="MSVTNYVLWCYILSYSGPLLSALPLPFPPASTSLLISNMGPEEM TKSEYKEKGGFRASAFVFGLALVTIQAYSKDLHPTYCGKSSCIKGGMAVMLYASLALL ALGSGGVKGALPALGGDQFDQKDPKEAKALARFFNWLLLSTTLGACIGVTGIVWVSTE KDWYWGFFISTVATFIGFVVLALGKPYYRLREPTPSDSPIIRIAQVIAVAIKNRRLAL PENPDELFEMNEKEKVFREETISHTNQFRCLDKAAIVTNDSKLTPWTVCTVTQVEEVK ILTRMLPILGSTIIMNTCMAQLQTFSVQQGNIMDRHLGKKEVPAPSIPVIPLAFMSIL IPIYELFFVPFARKITHHPSGITQLQRIGVGLVLSAISMTVAGVVEVKRRNQALKDIT KPISLFWLSFQYGIFGIADMFTLVGLLEFFYKEAPVCMRSLSTSFTWLSLSFGYFLST LFVNIINSVTKRITPSKQGWLHGLDLNQNNLNLFYWFLAILSSLNFVNYLYWASWYKY TPEEPDPDTKPKDLSTGPPLAKEENTLDGGAKETNDAPSSVQTEDAKQ" CDS complement(join(40323182..40324112,40324203..40324327, 40324438..40324866,40324998..40325215,40325363..40325432, 40325497..40325613)) /locus_tag="TCM_026855" /note="encoded by transcript variant 1; alternatively spliced; paralog of Thecc1EG040996t1" /codon_start=1 /product="Major facilitator superfamily protein isoform 1" /protein_id="EOY11788.1" /db_xref="Phytozome:GSVIVT01031343001" /db_xref="TAIR:AT1G59740.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N403" /translation="MSVTNYVLWCYILSYSGPLLSALPLPFPPASTSLLISNMGPEEM TKSEYKEKGGFRASAFVFVLVALENMGFVANMVSLVLYFGYVMYFNISAAANTLTNFM GSTFLLSLLGGFISDTFLSRFTTSLLFGFFEVLGLALVTIQAYSKDLHPTYCGKSSCI KGGMAVMLYASLALLALGSGGVKGALPALGGDQFDQKDPKEAKALARFFNWLLLSTTL GACIGVTGIVWVSTEKDWYWGFFISTVATFIGFVVLALGKPYYRLREPTPSDSPIIRI AQVIAVAIKNRRLALPENPDELFEMNEKEKVFREETISHTNQFRCLDKAAIVTNDSKL TPWTVCTVTQVEEVKILTRMLPILGSTIIMNTCMAQLQTFSVQQGNIMDRHLGKKEVP APSIPVIPLAFMSILIPIYELFFVPFARKITHHPSGITQLQRIGVGLVLSAISMTVAG VVEVKRRNQALKDITKPISLFWLSFQYGIFGIADMFTLVGLLEFFYKEAPVCMRSLST SFTWLSLSFGYFLSTLFVNIINSVTKRITPSKQGWLHGLDLNQNNLNLFYWFLAILSS LNFVNYLYWASWYKYTPEEPDPDTKPKDLSTGPPLAKEENTLDGGAKETNDAPSSVQT EDAKQ" CDS complement(join(40323182..40324112,40324203..40324261)) /locus_tag="TCM_026855" /note="encoded by transcript variant 2; alternatively spliced; paralog of Thecc1EG040996t1" /codon_start=1 /product="Major facilitator superfamily protein isoform 2" /protein_id="EOY11789.1" /db_xref="Phytozome:GSVIVT01031343001" /db_xref="TAIR:AT1G27040.1" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N403" /translation="MNEKEKVFREETISHTNQFRCLDKAAIVTNDSKLTPWTVCTVTQ VEEVKILTRMLPILGSTIIMNTCMAQLQTFSVQQGNIMDRHLGKKEVPAPSIPVIPLA FMSILIPIYELFFVPFARKITHHPSGITQLQRIGVGLVLSAISMTVAGVVEVKRRNQA LKDITKPISLFWLSFQYGIFGIADMFTLVGLLEFFYKEAPVCMRSLSTSFTWLSLSFG YFLSTLFVNIINSVTKRITPSKQGWLHGLDLNQNNLNLFYWFLAILSSLNFVNYLYWA SWYKYTPEEPDPDTKPKDLSTGPPLAKEENTLDGGAKETNDAPSSVQTEDAKQ" mobile_element 40326652..40327789 /note="source:CACAO_on_E683_scaffold_9 1211 2307" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene 40327790..40334369 /locus_tag="TCM_026856" /note="dbxref CacaoGD:Thecc1EG026856" mRNA join(40327790..40328031,40328116..40328232, 40328375..40328433,40328585..40328644,40328792..40328845, 40328960..40329008,40329105..40329152,40329321..40329386, 40329479..40329533,40329683..40329705,40329801..40329926, 40330002..40330086,40330194..40330275,40330931..40331045, 40331143..40331199,40331297..40331343,40331426..40331480, 40333275..40333381,40334079..40334364) /locus_tag="TCM_026856" /product="5'-3' exonuclease family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s00270.1" /inference="similar to AA sequence:TAIR:AT5G26680.2" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.87 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g01709t00001" mRNA join(40327790..40328031,40328116..40328232, 40328375..40328433,40328585..40328644,40328792..40328845, 40328960..40329008,40329105..40329152,40329321..40329386, 40329479..40329529,40329807..40329926,40330002..40330086, 40330194..40330275,40330931..40331045,40331143..40331199, 40331297..40331343,40331426..40331480,40331917..40332047) /locus_tag="TCM_026856" /product="5'-3' exonuclease family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s00270.1" /inference="similar to AA sequence:Phytozome:GSVIVT01031344001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.89 coverage; inference alignment:PASA:2:TSA:puevd3b025979t1a3; inference alignment:Newbler:10:TSA:cgbaP2_g01709t00001" mRNA join(40327866..40328031,40328116..40328232, 40328375..40328433,40328585..40328644,40328792..40328845, 40328960..40329008,40329105..40329152,40329321..40329386, 40329479..40329529,40329801..40329926,40330002..40330086, 40330194..40330275,40330931..40331045,40331143..40331199, 40331297..40331343,40331426..40331480,40333275..40333381, 40334079..40334369) /locus_tag="TCM_026856" /product="5'-3' exonuclease family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s00270.1" /inference="similar to AA sequence:TAIR:AT5G26680.2" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12505t6; inference alignment:Newbler:10:TSA:cgbaP2_g01709t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12505t5" mRNA join(40327866..40328031,40328116..40328232, 40328375..40328433,40328585..40328644,40328792..40328845, 40328960..40329008,40329105..40329152,40329321..40329386, 40329479..40329529,40329807..40329926,40330002..40330086, 40330194..40330275,40330931..40331045,40331143..40331199, 40331297..40331343,40331426..40331480,40333275..40333381, 40334079..40334369) /locus_tag="TCM_026856" /product="5'-3' exonuclease family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s00270.1" /inference="similar to AA sequence:TAIR:AT5G26680.2" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12505t3; inference alignment:Newbler:10:TSA:cgbaP2_g01709t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12505t5" mRNA join(40327890..40328031,40328116..40328232, 40328375..40328433,40328585..40328644,40328792..40328845, 40328960..40329008,40329105..40329152,40329321..40329386, 40329479..40329529,40329807..40329926,40330002..40330086, 40330194..40330275,40330931..40331045,40331143..40331199, 40331297..40331343,40331426..40331480,40331958..>40332122) /locus_tag="TCM_026856" /product="5'-3' exonuclease family protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s00270.1" /inference="similar to AA sequence:Phytozome:GSVIVT01031344001" /note="transcript variant 5; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.90 coverage; inference alignment:Newbler:10:TSA:cgbaL_g00912t00003; inference alignment:Newbler:10:TSA:cgbaP2_g01709t00001; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12505t5" CDS join(40328020..40328031,40328116..40328232, 40328375..40328433,40328585..40328644,40328792..40328845, 40328960..40329008,40329105..40329152,40329321..40329386, 40329479..40329533,40329683..40329705,40329801..40329926, 40330002..40330086,40330194..40330275,40330931..40331045, 40331143..40331199,40331297..40331343,40331426..40331480, 40333275..40333349) /locus_tag="TCM_026856" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="5'-3' exonuclease family protein isoform 1" /protein_id="EOY11791.1" /db_xref="TAIR:AT5G26680.2" /db_xref="UniProtKB/TrEMBL:UniRef50_C5WU23" /translation="MGIKGLTKLLADNAPKAMKEQKFESFFGRKIAIDASMSIYQFLI VVGRSGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGIKPVYVFDGQPPDLKKQELAKRY SKRADATEDLQQAMEAGNKEDIEKFSKRTVKVTKQHNEDCKRLLRLMGVPVIEASSEA EAQCAALCKSGKAILSHHLFLFQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKVPVME FEVAKVLEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIEHILQNIN KERYSIPDDWPYQEARQLFQEPLVCTDDEQLEMKWNAPDDEGLITFLVNENGFNGDRV TKAIEKIKAAKNKSSQGRLESFFKPVGNTSIPIKRKETPQNIPKETTNKKLKAGGGKK KK" CDS join(40328020..40328031,40328116..40328232, 40328375..40328433,40328585..40328644,40328792..40328845, 40328960..40329008,40329105..40329152,40329321..40329386, 40329479..40329529,40329801..40329926,40330002..40330086, 40330194..40330275,40330931..40331045,40331143..40331199, 40331297..40331343,40331426..40331480,40333275..40333349) /locus_tag="TCM_026856" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="5'-3' exonuclease family protein isoform 2" /protein_id="EOY11792.1" /db_xref="TAIR:AT5G26680.2" /db_xref="UniProtKB/TrEMBL:UniRef50_C5WU23" /translation="MGIKGLTKLLADNAPKAMKEQKFESFFGRKIAIDASMSIYQFLI VVGRSGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGIKPVYVFDGQPPDLKKQELAKRY SKRADATEDLQQAMEAGNKEDIEKFSKRTVKVTKQHNEDCKRLLRLMGVPVIEASSEA EAQCAALCKSGKFQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKVPVMEFEVAKVLEE LNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIEHILQNINKERYSIPDD WPYQEARQLFQEPLVCTDDEQLEMKWNAPDDEGLITFLVNENGFNGDRVTKAIEKIKA AKNKSSQGRLESFFKPVGNTSIPIKRKETPQNIPKETTNKKLKAGGGKKKK" CDS join(40328020..40328031,40328116..40328232, 40328375..40328433,40328585..40328644,40328792..40328845, 40328960..40329008,40329105..40329152,40329321..40329386, 40329479..40329529,40329807..40329926,40330002..40330086, 40330194..40330275,40330931..40331045,40331143..40331199, 40331297..40331343,40331426..40331480,40333275..40333349) /locus_tag="TCM_026856" /note="encoded by transcript variant 3; alternatively spliced" /codon_start=1 /product="5'-3' exonuclease family protein isoform 3" /protein_id="EOY11793.1" /db_xref="TAIR:AT5G26680.2" /db_xref="UniProtKB/TrEMBL:UniRef50_C5WU23" /translation="MGIKGLTKLLADNAPKAMKEQKFESFFGRKIAIDASMSIYQFLI VVGRSGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGIKPVYVFDGQPPDLKKQELAKRY SKRADATEDLQQAMEAGNKEDIEKFSKRTVKVTKQHNEDCKRLLRLMGVPVIEASSEA EAQCAALCKSGKVYAVASEDMDSLTFGAPRFLRHLMDPSSRKVPVMEFEVAKVLEELN LTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIEHILQNINKERYSIPDDWP YQEARQLFQEPLVCTDDEQLEMKWNAPDDEGLITFLVNENGFNGDRVTKAIEKIKAAK NKSSQGRLESFFKPVGNTSIPIKRKETPQNIPKETTNKKLKAGGGKKKK" CDS join(40328020..40328031,40328116..40328232, 40328375..40328433,40328585..40328644,40328792..40328845, 40328960..40329008,40329105..40329152,40329321..40329386, 40329479..40329529,40329807..40329926,40330002..40330086, 40330194..40330275,40330931..40331045,40331143..40331199, 40331297..40331343,40331426..40331480,40331958..>40332122) /locus_tag="TCM_026856" /note="encoded by transcript variant 5; alternatively spliced" /codon_start=1 /product="5'-3' exonuclease family protein isoform 5" /protein_id="EOY11795.1" /db_xref="Phytozome:GSVIVT01031344001" /db_xref="TAIR:AT5G26680.2" /db_xref="UniProtKB/TrEMBL:UniRef50_C5WU23" /translation="MGIKGLTKLLADNAPKAMKEQKFESFFGRKIAIDASMSIYQFLI VVGRSGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGIKPVYVFDGQPPDLKKQELAKRY SKRADATEDLQQAMEAGNKEDIEKFSKRTVKVTKQHNEDCKRLLRLMGVPVIEASSEA EAQCAALCKSGKVYAVASEDMDSLTFGAPRFLRHLMDPSSRKVPVMEFEVAKVLEELN LTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIEHILQNINKERYSIPDDWP YQEARQLFQEPLVCTDDEQLEMKWNAPDDEGLITFLVNENGFNGDRVTKAIEKIKAAK NKSSQGRLESFFKPVGNTSIPIKRKGTKCMLQFPKPMLKSKILSPQVCKFSRPKGFGS MPTLGPDFKHSAAFSRGVCFGT" CDS join(40328020..40328031,40328116..40328232, 40328375..40328433,40328585..40328644,40328792..40328845, 40328960..40329008,40329105..40329152,40329321..40329386, 40329479..40329529,40329807..40329926,40330002..40330086, 40330194..40330275,40330931..40331045,40331143..40331199, 40331297..40331343,40331426..40331480,40331917..40331934) /locus_tag="TCM_026856" /note="encoded by transcript variant 4; alternatively spliced" /codon_start=1 /product="5'-3' exonuclease family protein isoform 4" /protein_id="EOY11794.1" /db_xref="Phytozome:GSVIVT01031344001" /db_xref="TAIR:AT5G26680.2" /db_xref="UniProtKB/TrEMBL:UniRef50_C5WU23" /translation="MGIKGLTKLLADNAPKAMKEQKFESFFGRKIAIDASMSIYQFLI VVGRSGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGIKPVYVFDGQPPDLKKQELAKRY SKRADATEDLQQAMEAGNKEDIEKFSKRTVKVTKQHNEDCKRLLRLMGVPVIEASSEA EAQCAALCKSGKVYAVASEDMDSLTFGAPRFLRHLMDPSSRKVPVMEFEVAKVLEELN LTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIEHILQNINKERYSIPDDWP YQEARQLFQEPLVCTDDEQLEMKWNAPDDEGLITFLVNENGFNGDRVTKAIEKIKAAK NKSSQGRLESFFKPVGNTSIPIKRKAYWLP" mobile_element 40334426..40334574 /note="source:CACAO_on_E745_scaffold_10 944 1133" /mobile_element_type="transposon:TIR/PIF-Harbinger" gene complement(40334507..40342427) /locus_tag="TCM_026859" /note="dbxref CacaoGD:Thecc1EG026859" mRNA complement(join(40334507..40334882,40335001..40335214, 40335974..40336051,40336726..40336807,40336904..40336996, 40337086..40337195,40337389..40337451,40338043..40338094, 40338197..40338321,40338984..40339097,40339188..40339247, 40339912..40339982,40340764..40340828,40340912..40341015, 40341148..40341196,40341289..40341470,40341659..40341717, 40341814..40342427)) /locus_tag="TCM_026859" /product="MBOAT (membrane bound O-acyl transferase) family protein isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g41940.1" /inference="similar to AA sequence:ricco:30128.m008994" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:PASA:2:TSA:puevd3b025981t1a2; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12511t4" mRNA complement(join(40334514..40334882,40335001..40335050, 40335139..40335214,40335974..40336051,40336726..40336807, 40336904..40336996,40337086..40337195,40337389..40337451, 40338043..40338094,40338197..40338321,40338984..40339097, 40339188..40339247,40339912..40339982,40340764..40340828, 40340912..40341015,40341148..40341196,40341289..40341470, 40341659..40341717,40341814..40342425)) /locus_tag="TCM_026859" /product="MBOAT (membrane bound O-acyl transferase) family protein isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g41940.1" /inference="similar to AA sequence:ricco:30128.m008994" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.79 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12511t4" mRNA complement(join(40334565..40334882,40335001..40335147, 40337085..40337195,40337389..40337451,40338043..40338094, 40338197..40338321,40338984..40339097,40339188..40339247, 40339912..40339982,40340764..40340828,40340912..40341015, 40341148..40341196,40341289..40341470,40341659..40341717, 40341814..40342399)) /locus_tag="TCM_026859" /product="MBOAT family protein isoform 5" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g41940.1" /inference="similar to AA sequence:ricco:30128.m008994" /note="transcript variant 5; alternatively spliced; quality class is strong, express is strong, homology is ortholog medium, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc968t12; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12511t4" CDS complement(join(40334841..40334882,40335001..40335050, 40335139..40335214,40335974..40336051,40336726..40336807, 40336904..40336996,40337086..40337195,40337389..40337451, 40338043..40338094,40338197..40338321,40338984..40339097, 40339188..40339247,40339912..40339982,40340764..40340828, 40340912..40341015,40341148..40341196,40341289..40341470, 40341659..40341717,40341814..40341946)) /locus_tag="TCM_026859" /note="encoded by transcript variant 1; alternatively spliced; dbxref ricco:30128.m008994" /codon_start=1 /product="MBOAT (membrane bound O-acyl transferase) family protein isoform 1" /protein_id="EOY11796.1" /db_xref="TAIR:AT1G57600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RY80" /translation="MNNNNNNSKGKLKQKQNKVELSLLILYAIGFYAFCIRRSLHLSR HHFSKLYGLRGGWLFPPRLNDVSDAQWRNFRANLPLLTLVFGVFTMLANISRQCFHFR ARGMSIVWLFLSLIYLSYLHGACVVFILLIASANFLLVKIFAKAKYFPLVLWTFNLFF LFCNRVYQGYSFSKFGQRWTYLDNFRGTFRWHICFNFVVLRMISFGYDYHWAHQDSRF DQEKHIQRCHVCKSGKICYQILQERNVHTNNFTFTIYLSYLVYAPFYISGPIISFNAF ASQLDVPQNHYSIKEVTWYGLRWVFVLSLMELMTHLFYFNAFAVSGSWQMLSPMDIFI IGYGVINFMWLKFFLIWRYFRFWSLIAGIEAPENMPKCVNNCYNLEGFWKSWHASFNK WIVRYMYIPLGGSRRKLLNIWVIFTFVAIWHDLEWKLLSWAWLTCLFFVPEMLVKSAT NALQAEGALGGFIFHELKAAAGAITITCLMVANLVGYVIGPSGINWLISRFLRKEGLS VLGFMLLSFYVGTKLMFQISDAKQRVQ" CDS complement(join(40334841..40334882,40335001..40335147, 40337085..40337195,40337389..40337451,40338043..40338094, 40338197..40338321,40338984..40339097,40339188..40339247, 40339912..40339982,40340764..40340828,40340912..40341015, 40341148..40341196,40341289..40341470,40341659..40341717, 40341814..40341946)) /locus_tag="TCM_026859" /note="encoded by transcript variant 5; alternatively spliced; dbxref ricco:30128.m008994" /codon_start=1 /product="MBOAT family protein isoform 5" /protein_id="EOY11800.1" /db_xref="TAIR:AT1G57600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RY80" /translation="MNNNNNNSKGKLKQKQNKVELSLLILYAIGFYAFCIRRSLHLSR HHFSKLYGLRGGWLFPPRLNDVSDAQWRNFRANLPLLTLVFGVFTMLANISRQCFHFR ARGMSIVWLFLSLIYLSYLHGACVVFILLIASANFLLVKIFAKAKYFPLVLWTFNLFF LFCNRVYQGYSFSKFGQRWTYLDNFRGTFRWHICFNFVVLRMISFGYDYHWAHQDSRF DQEKHIQRCHVCKSGKICYQILQERNVHTNNFTFTIYLSYLVYAPFYISGPIISFNAF ASQLDVPQNHYSIKEVTWYGLRWVFVLSLMELMTHLFYFNAFAVSGSWQMLSPMDIFI IGYGVINFMWLKFFLIWRYFRFWSLIAGIEAPENMPKCVNNCYNLEGFWKSWHASFNK WIVREKKVWDCDMPFTLIKLFPVYLIAAQLIQYVFSGLSVLGFMLLSFYVGTKLMFQI SDAKQRVQ" mRNA complement(join(40335085..40335214,40335974..40336051, 40337086..40337195,40337389..40337451,40338043..40338094, 40338197..40338321,40338984..40339097,40339188..40339247, 40339912..40339982,40340764..40340828,40340912..40341015, 40341148..40341196,40341289..40341470,40341659..40341717, 40341814..40342427)) /locus_tag="TCM_026859" /product="MBOAT family protein isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g41940.1" /inference="similar to AA sequence:ricco:30128.m008994" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:PASA:2:TSA:puevd3b025981t1a3; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12511t4" CDS complement(join(40335125..40335214,40335974..40336051, 40336726..40336807,40336904..40336996,40337086..40337195, 40337389..40337451,40338043..40338094,40338197..40338321, 40338984..40339097,40339188..40339247,40339912..40339982, 40340764..40340828,40340912..40341015,40341148..40341196, 40341289..40341470,40341659..40341717,40341814..40341946)) /locus_tag="TCM_026859" /note="encoded by transcript variant 2; alternatively spliced; dbxref ricco:30128.m008994" /codon_start=1 /product="MBOAT (membrane bound O-acyl transferase) family protein isoform 2" /protein_id="EOY11797.1" /db_xref="TAIR:AT1G57600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RY80" /translation="MNNNNNNSKGKLKQKQNKVELSLLILYAIGFYAFCIRRSLHLSR HHFSKLYGLRGGWLFPPRLNDVSDAQWRNFRANLPLLTLVFGVFTMLANISRQCFHFR ARGMSIVWLFLSLIYLSYLHGACVVFILLIASANFLLVKIFAKAKYFPLVLWTFNLFF LFCNRVYQGYSFSKFGQRWTYLDNFRGTFRWHICFNFVVLRMISFGYDYHWAHQDSRF DQEKHIQRCHVCKSGKICYQILQERNVHTNNFTFTIYLSYLVYAPFYISGPIISFNAF ASQLDVPQNHYSIKEVTWYGLRWVFVLSLMELMTHLFYFNAFAVSGSWQMLSPMDIFI IGYGVINFMWLKFFLIWRYFRFWSLIAGIEAPENMPKCVNNCYNLEGFWKSWHASFNK WIVRYMYIPLGGSRRKLLNIWVIFTFVAIWHDLEWKLLSWAWLTCLFFVPEMLVKSAT NALQAEGALGGFIFHELKAAAGAITITCLMVANLVGYVIGPSGINWLISRFLRKEGMG L" CDS complement(join(40335163..40335214,40335974..40336051, 40337086..40337195,40337389..40337451,40338043..40338094, 40338197..40338321,40338984..40339097,40339188..40339247, 40339912..40339982,40340764..40340828,40340912..40341015, 40341148..40341196,40341289..40341470,40341659..40341717, 40341814..40341946)) /locus_tag="TCM_026859" /note="encoded by transcript variant 4; alternatively spliced; dbxref ricco:30128.m008994" /codon_start=1 /product="MBOAT family protein isoform 4" /protein_id="EOY11799.1" /db_xref="TAIR:AT1G57600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RY80" /translation="MNNNNNNSKGKLKQKQNKVELSLLILYAIGFYAFCIRRSLHLSR HHFSKLYGLRGGWLFPPRLNDVSDAQWRNFRANLPLLTLVFGVFTMLANISRQCFHFR ARGMSIVWLFLSLIYLSYLHGACVVFILLIASANFLLVKIFAKAKYFPLVLWTFNLFF LFCNRVYQGYSFSKFGQRWTYLDNFRGTFRWHICFNFVVLRMISFGYDYHWAHQDSRF DQEKHIQRCHVCKSGKICYQILQERNVHTNNFTFTIYLSYLVYAPFYISGPIISFNAF ASQLDVPQNHYSIKEVTWYGLRWVFVLSLMELMTHLFYFNAFAVSGSWQMLSPMDIFI IGYGVINFMWLKFFLIWRYFRFWSLIAGIEAPENMPKCVNNCYNLEGFWKSWHASFNK WIVRLRVHWEDSFFMNLKQLLVLSQSLVSWLLTSLAMLLAHQALIG" mRNA complement(join(40336029..40336807,40336904..40336996, 40337086..40337195,40337389..40337451,40338043..40338094, 40338197..40338321,40338984..40339097,40339188..40339247, 40339912..40339982,40340764..40340828,40340912..40341015, 40341148..40341196,40341289..40341470,40341659..40341717, 40341814..40342399)) /locus_tag="TCM_026859" /product="MBOAT (membrane bound O-acyl transferase) family protein isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:Glyma10g41940.1" /inference="similar to AA sequence:ricco:30128.m008994" /note="transcript variant 3; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.72 coverage; inference alignment:Velvet:11:TSA:cacao3v3sc5Loc968t16; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12511t4" CDS complement(join(40336636..40336807,40336904..40336996, 40337086..40337195,40337389..40337451,40338043..40338094, 40338197..40338321,40338984..40339097,40339188..40339247, 40339912..40339982,40340764..40340828,40340912..40341015, 40341148..40341196,40341289..40341470,40341659..40341717, 40341814..40341946)) /locus_tag="TCM_026859" /note="encoded by transcript variant 3; alternatively spliced; dbxref ricco:30128.m008994" /codon_start=1 /product="MBOAT (membrane bound O-acyl transferase) family protein isoform 3" /protein_id="EOY11798.1" /db_xref="TAIR:AT1G57600.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q8RY80" /translation="MNNNNNNSKGKLKQKQNKVELSLLILYAIGFYAFCIRRSLHLSR HHFSKLYGLRGGWLFPPRLNDVSDAQWRNFRANLPLLTLVFGVFTMLANISRQCFHFR ARGMSIVWLFLSLIYLSYLHGACVVFILLIASANFLLVKIFAKAKYFPLVLWTFNLFF LFCNRVYQGYSFSKFGQRWTYLDNFRGTFRWHICFNFVVLRMISFGYDYHWAHQDSRF DQEKHIQRCHVCKSGKICYQILQERNVHTNNFTFTIYLSYLVYAPFYISGPIISFNAF ASQLDVPQNHYSIKEVTWYGLRWVFVLSLMELMTHLFYFNAFAVSGSWQMLSPMDIFI IGYGVINFMWLKFFLIWRYFRFWSLIAGIEAPENMPKCVNNCYNLEGFWKSWHASFNK WIVRYMYIPLGGSRRKLLNIWVIFTFVAIWHDLEWKLLSWAWLTCLFFVPEMLVKSAT NALQVKSMFSTSYYFGMIITTVMKILALFSLGS" mobile_element complement(40344641..40345007) /note="source:CACAO_M_E4063_F12_scaffold_2 5675 6040" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 40344777..40345905 /note="source:CACAO_M_E3969_F127_scaffold_1 1087 2160" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(40346109..40350489) /note="source:CACAO_M_S_E66639_F28_scaffold_5 1272 5662" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 40350491..40353295 /note="source:CACAO_M_E44261_F305_scaffold_5 1 2805" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 40353296..40354621 /note="source:CACAO_M_S_E98983_F28_scaffold_8 5608 6953" /mobile_element_type="retrotransposon:LTR/Gypsy" gene 40355024..40356650 /locus_tag="TCM_026861" /note="dbxref CacaoGD:Thecc1EG026861" mRNA join(40355024..40355264,40355840..40356650) /locus_tag="TCM_026861" /product="Germin-like protein 10" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031351001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG004977t1" /inference="similar to AA sequence:Phytozome:GSVIVT01031351001" /note="quality class is strong, express is strong, homology is ortholog strong, intron is medium, protein is complete; similar to RNA sequence, EST 0.82 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g10009t00001" CDS join(40355156..40355264,40355840..40356384) /locus_tag="TCM_026861" /note="paralog of Thecc1EG004977t1" /codon_start=1 /product="Germin-like protein 10" /protein_id="EOY11801.1" /db_xref="Phytozome:GSVIVT01031351001" /db_xref="TAIR:AT3G62020.1" /db_xref="UniProtKB/TrEMBL:UniRef50_C7S8D0" /translation="MEAFVALFLTTFALVLGAAVADPDLLQDICVADLSSGVKVNGFP CKNPSSVGADDFFFAGLAKPGFTNNTMGSLVTGANVEKIPGLNTLGVSLSRIDYAPGG LNPPHTHPRATEVVFVLEGELEVGFITTSNVLISKSIRKGEIFVFPKGLVHFQKNIGM MPASVIAAFNSQLPGTQSLAATLFAATPTVPDDVLSKAFQIGTKQVQKIKSRLAPKK" gene complement(40357485..40361222) /locus_tag="TCM_047055" /note="dbxref CacaoGD:Thecc1EG047055" mRNA complement(join(40357485..40357902,40358465..40358932, 40359051..40360153,40360447..40360600,40360728..40360824, 40360932..40361222)) /locus_tag="TCM_047055" /product="Glutamyl/glutaminyl-tRNA synthetase, class Ic" /inference="alignment:exonerate- protein:2:ricco:30128.m008996" /inference="similar to AA sequence:ricco:30128.m008996" /note="quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.85 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04362t00001" CDS complement(join(40357684..40357902,40358465..40358932, 40359051..40360153,40360447..40360600,40360728..40360824, 40360932..40361086)) /locus_tag="TCM_047055" /note="dbxref ricco:30128.m008996" /codon_start=1 /product="Glutamyl/glutaminyl-tRNA synthetase, class Ic" /protein_id="EOY11802.1" /db_xref="TAIR:AT5G26710.1" /translation="MEEQGSKQFSFPPDSPPLSVIAAAKIAGIDLPIQTSSSSSSSSS PTLSFSNGLKLHGTNVILRYVGRLATIRNFYGHDAFHAAQIDEWLEYAPILSFGSEFE NACGFLDTYLEKRTFLVSHYFSIADISIWSGLAGTGLRWESMRKSNKYPNLVRWYNSV SAEYSDTLKQVTAFYVGKKGLGKPVAAKQKEQKSVNGDISDKAKVASRPSAEVDLPDA EIGKVRLRFAPEPSGYLHIGHSKAALLNQYFAQRYQGEVILRFDDTNPTKESNEFVEN LIKDVETLGIKYQKITYTSDYFPKLMEMAEKLIQEGKAYVDDTPREEMQKERMDGIES KCRNNSVEENLKLWKEMIAGSERGLRCCLRGKLDMQDPNKSLRDPVYYRCNPVSHHRI GSKYKIYPTYDFACPFVDAEEGITHALRSSEYHDRNAQYYRIQEDMGMHKVLIYEFSR LNLVYTLLSKRKLLWFVQNGKVDGWDDPRFPTVQGIVRRGLKIEALIQFILEQGASKN LNLMEWDKLWTINKKIIDPVCPRHTAVIEERRVLLTLTNGPNEPFVRIIPRHKKYDGA GEKATTYTRRIWIDYADAECVSVDEEVTLMDWGNAIVKDIIKDQDGNITQLVGILHLE GSVKTTKLKLTWLAETSELVNLSLVEFDYLITKKKLEEGEDFLDVLNPCTKREIAAVG DSNMRNLKQGEILQLERKGYFRCDVPFVRASKPVVLIAIPDGRQQSVLK" gene complement(40361815..40367844) /locus_tag="TCM_047056" /note="dbxref CacaoGD:Thecc1EG047056" mRNA complement(join(40361815..40362336,40362596..40362886, 40363509..40364325,40364522..40366574,40367335..40367844)) /locus_tag="TCM_047056" /product="Phytochrome A" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0013s00220.1" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG002400t3" /inference="similar to AA sequence:Phytozome:GSVIVT01031354001" /note="quality class is strong-expertchoice, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.88 coverage; inference alignment:Velvet:11:TSA:cacao3vel4sc5Loc621t7" CDS complement(join(40362126..40362336,40362596..40362886, 40363509..40364325,40364522..40366568)) /locus_tag="TCM_047056" /note="paralog of Thecc1EG002400t3" /codon_start=1 /product="Phytochrome A" /protein_id="EOY11803.1" /db_xref="Phytozome:GSVIVT01031354001" /db_xref="TAIR:AT1G09570.1" /translation="MSSSRPSHSSSNSGRSRHSARIIAQTTVDAKLHANFEESGSSFD YSSSVRVSGDQQPRSDRVTTAYLHQIQKGKFIQPFGCLLALDEKTYKVIAYSENAPEM LTMVSHAVPSVGDHPVLGIGTDIKTIFTAPSSSALLKALGIGEVSLLNPILVHCKTSG KPFYAIIHRVTGSLIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERL CDTMVQEVFELTGYDRVMAYKFHDDDHGEVVSEITKPGLEPYLGLHYPATDIPQAARF LFMKNKVRMIVDCHAKHVKVFQDDKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLV MAVIVNDGDEEGDGPDSAQPQQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAI HVNKEIELENQIIEKNILRTQTLLCDMLLRDAPMGIISQSPNIMDLVKCDGAALLYKN KIWKLGVTPSDFQLHEIASWLSEYHMDSTGLSTDSLYDAGFPGALALGDVVCGMAAVR ITLKDMLFWFRSHTAAEIRWGGAKHEPGEKDNGRKMHPRSSFKAFLQVVKTRSMPWKD YEMDAIHSLQLILRNAFKDVETTDTNTSAIHSKLSDLKIEGMQELEAVTSEMVRLIET ATVPILAVDVDGLVNGWNMKIAELTGLPVDKAIGKHLLTLVEDSSVETVKQMLVLALQ GKEEKNIQFEIKTHGSRIEAGPISLVVNACANRDLHENVVGVCFVAQDITGQKIVMDK FTRIEGDYKAIVQNPNPLIPPIFGMDEFGWCSEWNPAMTKLTGWKRDEVVDKMLLGEV FGTHIACCRLKSQDSFVNLGVVLNNAMTGHEPEKVPFGFFARSGKYVECLLCVNKKLD REDAVTGVFCFLQLASHELQQALHVQRLSEQTAMKRLKALAYLKRQIRNPLSGIIFSR KMMEGTELGPEQKRLLQTSTLCQRQLSKILDDSDLDSIIDGYLDLEMIDFTLHEVLVA SISQVMMKSNGKGIRIVNDTEEEVMTETLYGDSVRLQQVLADFLLISVNFTPNGGQLV VVASLTKDQLGQSVHLAHLELRITHAGGGVPEALLSQMFGSDGDASEEGISLLISRKL VKLMNGDIQYLREAGRSTFIVTVELAAANRSRT" gene complement(40368205..40372141) /locus_tag="TCM_026863" /note="dbxref CacaoGD:Thecc1EG026863" mRNA complement(join(40368205..40369163,40371424..40372141)) /locus_tag="TCM_026863" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:PGSC0003DMP400031765" /note="quality class is medium-utrpoor, express is strong, homology is ortholog weak, intron is none, protein is utrpoor_complete; similar to RNA sequence, EST 0.98 coverage; inference alignment:Newbler:10:TSA:cgbaP2_g16489t00001" CDS complement(join(40369084..40369163,40371424..40371826)) /locus_tag="TCM_026863" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11804.1" /translation="MLTSEAERQISQVSGGVADDDDDQDTGGGASHSRRIDFDGCACK RDFIEEKVQQVVLFPFAKSKKKKQTKTRAKLSSFSSSGKRVDAGGGVCSGFCCTRPRT LESPADSKRSDPNDPTFTYEMLKALIESNHFYCTWMLYLAVNVKAVRTEQANLMDGII " mobile_element complement(40379464..40379560) /note="source:CACAO_M_E43428_F369_scaffold_5 1287 1339" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 40379662..40381133 /note="source:CACAO_M_S_E51162_F9_scaffold_4 10537 12007" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(40381133..40382253) /note="source:CACAO_on_E745_scaffold_10 1 1133" /mobile_element_type="transposon:TIR/PIF-Harbinger" mobile_element 40382250..40382354 /note="source:CACAO_M_E411_F9_scaffold_1 1328 1432" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(40382355..40382384) /note="source:CACAO_M_E42691_F9_scaffold_5 8958 8978" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 40383261..40384028 /note="source:CACAO_hAT_E2547_scaffold_5 1 768" /mobile_element_type="transposon:TIR/hAT" gene complement(40383418..40396116) /locus_tag="TCM_026865" /note="dbxref CacaoGD:Thecc1EG026865" mRNA complement(join(40383418..40383662,40384771..40384797, 40384942..40385379,40395958..40396116)) /locus_tag="TCM_026865" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s00270.1" /note="quality class is medium-expresste, express is medium, homology is ortholog weak, intron is none, protein is complete; similar to RNA sequence, EST 0.54 coverage" CDS complement(join(40383452..40383662,40384771..40384797, 40384942..40385249)) /locus_tag="TCM_026865" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11805.1" /translation="MLQIHFRHTLGGHPVPCRYEKLRNVGDARPRRRWVKKMSGGLKG LRLSRSRKLKTLCSVVFANRITRIYADIAHRLKMDGTLCPNIIFATHWGLPTLSHTGR LKTNRFSRSGLIRLVLTLLVFTTTEKRIFSSMKIMKIRLWNQINNEFLVDNLVVYIKK DITSFFSIKLIIDELKFRKYR" mobile_element complement(40386105..40386594) /note="source:scaffold_8_CACTA_0859 15975 16466" /mobile_element_type="transposon:TIR/CACTA" mobile_element 40387685..40389484 /note="source:CACAO_M_E4554_F15_scaffold_2 9358 10707" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 40389901..40391745 /note="source:CACAO_M_S_E66715_F4_scaffold_5 1 1845" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element 40395158..40395216 /note="source:CACAO_M_E49205_F4_scaffold_6 4189 4246" /mobile_element_type="retrotransposon:LTR/Copia" mobile_element complement(40397298..40397561) /note="source:CACAO_M_S_E66461_F76_scaffold_5 13893 14174" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 40398881..40399555 /note="source:CACAO_M_E84129_F15_scaffold_10 1 644" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 40399553..40399923 /note="source:CACAO_M_E44265_F33_scaffold_5 1 371" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 40401276..40404078 /note="source:CACAO_M_E44265_F33_scaffold_5 372 3174" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 40404179..40406831 /note="source:CACAO_M_E44265_F33_scaffold_5 3175 5827" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 40408960..40409345 /note="source:CACAO_M_E44265_F33_scaffold_5 6973 7358" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 40410411..40410598 /note="source:CACAO_M_E44265_F33_scaffold_5 7359 7546" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 40410599..40411485 /note="source:CACAO_M_E2978_F15_scaffold_1 637 1520" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 40411586..40412360 /note="source:CACAO_M_E59041_F15_scaffold_9 2332 3106" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element complement(40417865..40418016) /note="source:CACAO_M_S_E66461_F76_scaffold_5 11302 11460" /mobile_element_type="retrotransposon:LTR/Gypsy" mobile_element 40417879..40418010 /note="source:CACAO_M_S_E66657_F76_scaffold_5 4823 4954" /mobile_element_type="retrotransposon:LTR/Gypsy" gene complement(40422574..40423731) /locus_tag="TCM_026869" /note="dbxref CacaoGD:Thecc1EG026869" mRNA complement(join(40422574..40423167,40423703..40423731)) /locus_tag="TCM_026869" /product="UvrABC system protein C" /inference="alignment:exonerate- protein:2:Phytozome:POPTR_0005s00260.1" /note="quality class is strong, express is strong, homology is ortholog medium, intron is medium, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc1251t1_C2" CDS complement(40422879..40423157) /locus_tag="TCM_026869" /codon_start=1 /product="UvrABC system protein C" /protein_id="EOY11806.1" /translation="MLYGYMEHNYMIMEKRQLFLRSYQFCRKRSLAERIKRSLVRVKR VMWFRLRSAHKLRRSVLSRLRFALYRRRRFIRLRNNHHRHSGNSGCFW" gene complement(40424345..40430279) /locus_tag="TCM_026870" /note="dbxref CacaoGD:Thecc1EG026870" mRNA complement(join(40424345..40425466,40425580..40425813, 40427612..40427897,40429077..40429226,40429437..40429510, 40429639..40430065,40430187..40430279)) /locus_tag="TCM_026870" /product="Uncharacterized protein" /inference="alignment:exonerate- protein:2:ricco:30128.m009002" /inference="similar to AA sequence:ricco:30128.m009002" /note="quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 1.00 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc1088t5_C1" CDS complement(join(40425101..40425466,40425580..40425813, 40427612..40427897,40429077..40429226,40429437..40429510, 40429639..40429794)) /locus_tag="TCM_026870" /note="dbxref ricco:30128.m009002" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11807.1" /db_xref="TAIR:AT3G05940.1" /db_xref="UniProtKB/TrEMBL:UniRef50_Q949Z2" /translation="MGDSLPIYLNIVAFLCTAGAIALAILHIYRHLLNYTEPIFQRYI VRIIFMVPVYALMSFLSLVLPQSSIYFNSIREVYEAWVIYNFLSLCLAWVGGPGAVVL SLSGRVLKPSWYLMTCCFPPMPLDGRFIRRCKQGCLQFVILKPILVAVTLILYARGKY KDGNFSPRQAYLYLTIIYTISYTMALYALVLFYMACKDLLQPFNPVPKFIIIKSVVFL TYWQGVLVFLAAKSGFIKDAEAAAQFQNFIICVEMLIAAVGHLYAFPYKEYAGANIGG SRGLTGSLAHALKLNDFYHDTVHQFAPTYHDYVLYNHNDGDEGTRKYRSRTFVPTGPE MDAVRRNKLMFGNKLDDIQLSSLSSSGTSTPQNPGSVPDSARGDAIKSSLLVDPSNSY TVPYDMSLIDMDLSNYPQKVPAAKETETR" gene 40430498..40438701 /locus_tag="TCM_026871" /note="dbxref CacaoGD:Thecc1EG026871" mRNA join(40430498..40431208,40431584..40431723, 40431825..40432239,40433051..40433149,40434307..40434531, 40435342..40435719,40436218..40436391,40436655..40436966, 40437627..40437738,40437750..40438226) /locus_tag="TCM_026871" /product="DEAD box RNA helicase (RH3) isoform 4" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031360001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001895t3" /inference="similar to AA sequence:Phytozome:GSVIVT01031360001" /note="transcript variant 4; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.93 coverage; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc410t9; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc410t9; inference alignment:Newbler:10:TSA:cgbaB_g04282t00001" mRNA join(40430498..40431208,40431584..40431723, 40431825..40432239,40433051..40433149,40434307..40434531, 40435342..40435719,40436218..40436369,40436450..40436546, 40436719..>40436875) /locus_tag="TCM_026871" /product="DEAD box RNA helicase (RH3) isoform 3" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031360001" /inference="similar to AA sequence (same species):CacaoGD:Thecc1EG001895t3" /inference="similar to AA sequence:Phytozome:GSVIVT01031360001" /note="transcript variant 3; alternatively spliced; quality class is strongpartial, express is strong, homology is ortholog strong, intron is strong, protein is partial3; similar to RNA sequence, EST 0.90 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc427t18; inference alignment:Newbler:10:TSA:cgbaB_g04282t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc410t9" mRNA join(40430586..40431208,40431584..40431723, 40431825..40432239,40433051..40433149,40434307..40434531, 40435342..40435719,40436218..40436361,40436451..40436546, 40436719..40436966,40437627..40438701) /locus_tag="TCM_026871" /product="DEAD box RNA helicase isoform 1" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031360001" /inference="similar to AA sequence:Phytozome:POPTR_0005s00240.1" /note="transcript variant 1; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.80 coverage; inference alignment:Newbler:10:TSA:cgbaB_g04282t00001" mRNA join(40430705..40431208,40431584..40431723, 40431825..40432239,40433051..40433149,40434307..40434531, 40435342..40435719,40436218..40436361,40436451..40436546, 40436719..40436966,40437623..40438240) /locus_tag="TCM_026871" /product="DEAD box RNA helicase isoform 2" /inference="alignment:exonerate- protein:2:Phytozome:GSVIVT01031360001" /inference="similar to AA sequence:Phytozome:GSVIVT01031360001" /note="transcript variant 2; alternatively spliced; quality class is strong, express is strong, homology is ortholog strong, intron is strong, protein is complete; similar to RNA sequence, EST 0.92 coverage; inference alignment:Cufflinks:08:TSA:cacao11r39cuf8_Gsc5g12501t1; inference alignment:Newbler:10:TSA:cgbaB_g04282t00001; inference alignment:Velvet:11:TSA:cacao3vel5sc5Loc410t9" CDS join(40430804..40431208,40431584..40431723, 40431825..40432239,40433051..40433149,40434307..40434531, 40435342..40435719,40436218..40436361,40436451..40436546, 40436719..40436966,40437627..40437705) /locus_tag="TCM_026871" /note="encoded by transcript variant 1; alternatively spliced" /codon_start=1 /product="DEAD box RNA helicase isoform 1" /protein_id="EOY11808.1" /db_xref="Phytozome:POPTR_0005s00240.1" /db_xref="TAIR:AT5G26742.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N3Z4" /translation="MASLVGLSSSIHHTPSLDTFSISNRRITSFTAAASCLPLPFTDK AQFNALVVAGRPLLSFKHSFVPRAVATPNSVLSEQAFKGLSLHQDQDGQDVYEAAASS NHDDELDISKLGLPQRLVDSLLQRGITHLFPIQRAVFVPALQGRDIIARAKTGTGKTL AFGIPIIKRLTHDAPQQTSPRRMSGRLPRVLVLAPTRELAKQVEKEIKESAPYLNTVC VYGGVSYNTQRNALSRGVDVVVGTPGRIIDLIESSDLKLGEVEYLVLDEADQMLAVGF EEDVEEILENLPSKRQSMLFSATMPSWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKL YAISTTSTAKRTILSDLITVYAKGGKTIVFTQTKRDADDVSIALTNSIASEALHGDIS QHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVELVIHYELPNDAETFVHRSGRTGR AGKEGSAILMFTNSQRRTVRSLERDVGCKFEFISAPAIEEVLESSAEQIVATLNGVHP HSIEFFTPTAQRLIEEEGINALAAALAHLSGFSRPPSSRSLISHEQGLVTLQLTRDSS YSRGFLSARSVTGFLSDVYPVAADEVGKVYLIADERVQGAVFDLPEEIAKELLNKQTP PGNTISKITKLPPLQDDGPSSDYYGKFSSRDRSPRGISKDRRGFRGSRSWSSGRNSDD EVRGGRSSWSRTSKSSRDDWLIGSRRSKRSSSHDRSFGGSCFNCGRPGHRASDCPEKL DF" CDS join(40430804..40431208,40431584..40431723, 40431825..40432239,40433051..40433149,40434307..40434531, 40435342..40435719,40436218..40436361,40436451..40436546, 40436719..40436966,40437623..40437671) /locus_tag="TCM_026871" /note="encoded by transcript variant 2; alternatively spliced" /codon_start=1 /product="DEAD box RNA helicase isoform 2" /protein_id="EOY11809.1" /db_xref="Phytozome:GSVIVT01031360001" /db_xref="TAIR:AT5G26742.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N3Z4" /translation="MASLVGLSSSIHHTPSLDTFSISNRRITSFTAAASCLPLPFTDK AQFNALVVAGRPLLSFKHSFVPRAVATPNSVLSEQAFKGLSLHQDQDGQDVYEAAASS NHDDELDISKLGLPQRLVDSLLQRGITHLFPIQRAVFVPALQGRDIIARAKTGTGKTL AFGIPIIKRLTHDAPQQTSPRRMSGRLPRVLVLAPTRELAKQVEKEIKESAPYLNTVC VYGGVSYNTQRNALSRGVDVVVGTPGRIIDLIESSDLKLGEVEYLVLDEADQMLAVGF EEDVEEILENLPSKRQSMLFSATMPSWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKL YAISTTSTAKRTILSDLITVYAKGGKTIVFTQTKRDADDVSIALTNSIASEALHGDIS QHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVELVIHYELPNDAETFVHRSGRTGR AGKEGSAILMFTNSQRRTVRSLERDVGCKFEFISAPAIEEVLESSAEQIVATLNGVHP HSIEFFTPTAQRLIEEEGINALAAALAHLSGFSRPPSSRSLISHEQGLVTLQLTRDSS YSRGFLSARSVTGFLSDVYPVAADEVGKVYLIADERVQGAVFDLPEEIAKELLNKQTP PGNTISKITKLPPLQDDGPSSDYYGKFSSRDRSPRGISKDRRGFRGSRSWSSGRNSDD EVRGGRSSWSRTSKSSRDDWLIGSRRSKRSSSHDRQKLWRFMFQLWTSWA" CDS join(40430804..40431208,40431584..40431723, 40431825..40432239,40433051..40433149,40434307..40434531, 40435342..40435719,40436218..40436369,40436450..40436546, 40436719..>40436874) /locus_tag="TCM_026871" /note="encoded by transcript variant 3; alternatively spliced; paralog of Thecc1EG001895t3" /codon_start=1 /product="DEAD box RNA helicase (RH3) isoform 3" /protein_id="EOY11810.1" /db_xref="Phytozome:GSVIVT01031360001" /db_xref="TAIR:AT5G26742.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N3Z4" /translation="MASLVGLSSSIHHTPSLDTFSISNRRITSFTAAASCLPLPFTDK AQFNALVVAGRPLLSFKHSFVPRAVATPNSVLSEQAFKGLSLHQDQDGQDVYEAAASS NHDDELDISKLGLPQRLVDSLLQRGITHLFPIQRAVFVPALQGRDIIARAKTGTGKTL AFGIPIIKRLTHDAPQQTSPRRMSGRLPRVLVLAPTRELAKQVEKEIKESAPYLNTVC VYGGVSYNTQRNALSRGVDVVVGTPGRIIDLIESSDLKLGEVEYLVLDEADQMLAVGF EEDVEEILENLPSKRQSMLFSATMPSWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKL YAISTTSTAKRTILSDLITVYAKGGKTIVFTQTKRDADDVSIALTNSIASEALHGDIS QHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVELVIHYELPNDAETFVHRSGRTGR AGKEGSAILMFTNSQRRTVRSLERDVGCKFEFISAPAIEEVLESSAEQIVATLNGVHP HSIEFFTPTAQRLIEEEGINALAAALAHLSGFSRPPSSRSLISHEQGLVTLQLTRDSS YSRGFLSARSVTGFLSDVYPVAADEVGKVYLIADERVCVVQGAVFDLPEEIAKELLNK QTPPGNTISKITKLPPLQDDGPSSDYYGKFSSRDRSPRGISKDRRGFRGSRSWSSGRN SDDEVRG" CDS join(40430804..40431208,40431584..40431723, 40431825..40432239,40433051..40433149,40434307..40434531, 40435342..40435719,40436218..40436391,40436655..40436687) /locus_tag="TCM_026871" /note="encoded by transcript variant 4; alternatively spliced; paralog of Thecc1EG001895t3" /codon_start=1 /product="DEAD box RNA helicase (RH3) isoform 4" /protein_id="EOY11811.1" /db_xref="Phytozome:GSVIVT01031360001" /db_xref="TAIR:AT5G26742.2" /db_xref="UniProtKB/TrEMBL:UniRef50_B9N3Z4" /translation="MASLVGLSSSIHHTPSLDTFSISNRRITSFTAAASCLPLPFTDK AQFNALVVAGRPLLSFKHSFVPRAVATPNSVLSEQAFKGLSLHQDQDGQDVYEAAASS NHDDELDISKLGLPQRLVDSLLQRGITHLFPIQRAVFVPALQGRDIIARAKTGTGKTL AFGIPIIKRLTHDAPQQTSPRRMSGRLPRVLVLAPTRELAKQVEKEIKESAPYLNTVC VYGGVSYNTQRNALSRGVDVVVGTPGRIIDLIESSDLKLGEVEYLVLDEADQMLAVGF EEDVEEILENLPSKRQSMLFSATMPSWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKL YAISTTSTAKRTILSDLITVYAKGGKTIVFTQTKRDADDVSIALTNSIASEALHGDIS QHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVELVIHYELPNDAETFVHRSGRTGR AGKEGSAILMFTNSQRRTVRSLERDVGCKFEFISAPAIEEVLESSAEQIVATLNGVHP HSIEFFTPTAQRLIEEEGINALAAALAHLSGFSRPPSSRSLISHEQGLVTLQLTRDSS YSRGFLSARSVTGFLSDVYPVAADEVGKVYLIADERVCVQKISVHFPLKHCFDALN" gene 40431204..40431585 /locus_tag="TCM_026872" /note="dbxref CacaoGD:Thecc1EG026872" mRNA 40431204..40431585 /locus_tag="TCM_026872" /product="Uncharacterized protein" /note="quality class is strong, express is strong, homology is none, intron is none, protein is complete; similar to RNA sequence, EST 0.50 coverage; inference alignment:Velvet:11:TSA:cacao3v1Svsc5Loc6357t1" CDS 40431235..40431438 /locus_tag="TCM_026872" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11812.1" /translation="MTSYLDSFAFQSCAPLTPIPLFRLFCPRVDNDNSHVSNLLVLCY LIIISNAPVGCFYLTSLDYYTIS" gene 40439171..40440447 /locus_tag="TCM_026873" /note="dbxref CacaoGD:Thecc1EG026873" mRNA 40439171..40440447 /locus_tag="TCM_026873" /product="Uncharacterized protein" /note="quality class is weak-utrpoor, express is none, homology is none, intron is none, protein is utrpoor_complete" CDS 40439347..40439574 /locus_tag="TCM_026873" /codon_start=1 /product="Uncharacterized protein" /protein_id="EOY11813.1" /translation="MPYPKTVEASRTFTDLLGARRPPGQPFFLVPCPMIIGGLRPFLG PLRAYRPPKRPSSLGPYLTTFGARDLYLLLQ" CONTIG join(KE132921.1:1..4588264,gap(10000),KE132922.1:1..3581162, gap(10000),KE132923.1:1..777823,gap(10000),KE132924.1:1..6612708, gap(10000),KE132925.1:1..3276251,gap(10000),KE132926.1:1..10022412, gap(10000),KE132927.1:1..3030375,gap(10000),KE132928.1:1..2813591, gap(10000),KE132929.1:1..2812053,gap(10000),KE132930.1:1..2838257) //